Query 044579
Match_columns 1103
No_of_seqs 1099 out of 5950
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 04:42:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044579.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044579hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 1E-144 2E-149 1399.3 95.2 1027 1-1085 1-1099(1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 9.7E-55 2.1E-59 531.2 27.0 574 185-800 161-786 (889)
3 PLN03194 putative disease resi 100.0 3.1E-42 6.7E-47 332.0 16.4 159 2-174 19-179 (187)
4 PF00931 NB-ARC: NB-ARC domain 100.0 5.2E-34 1.1E-38 317.4 16.1 261 187-452 1-278 (287)
5 PLN00113 leucine-rich repeat r 100.0 4.1E-30 8.9E-35 334.4 21.2 381 518-912 70-485 (968)
6 PLN00113 leucine-rich repeat r 100.0 2.8E-28 6E-33 317.3 21.7 333 575-913 237-582 (968)
7 KOG4194 Membrane glycoprotein 99.9 1.5E-26 3.2E-31 253.0 5.3 365 520-902 81-463 (873)
8 KOG0444 Cytoskeletal regulator 99.9 2.8E-27 6.1E-32 259.3 -4.3 313 523-851 61-380 (1255)
9 KOG0444 Cytoskeletal regulator 99.9 1.5E-26 3.3E-31 253.6 -6.6 312 534-868 48-373 (1255)
10 KOG4194 Membrane glycoprotein 99.9 1.9E-24 4.1E-29 236.6 2.2 309 521-842 129-448 (873)
11 KOG0472 Leucine-rich repeat pr 99.9 1.6E-25 3.5E-30 235.0 -11.2 230 522-767 73-307 (565)
12 PLN03210 Resistant to P. syrin 99.9 2.7E-21 5.9E-26 251.5 24.0 290 535-850 582-910 (1153)
13 KOG0472 Leucine-rich repeat pr 99.9 1.1E-24 2.4E-29 228.9 -10.4 257 520-796 48-309 (565)
14 KOG0618 Serine/threonine phosp 99.8 7.8E-22 1.7E-26 228.1 -4.1 332 521-868 25-441 (1081)
15 PF01582 TIR: TIR domain; Int 99.8 2.5E-20 5.4E-25 182.3 5.3 130 12-141 1-140 (141)
16 PRK15387 E3 ubiquitin-protein 99.8 9.9E-19 2.1E-23 210.5 15.0 243 575-853 223-465 (788)
17 PRK15387 E3 ubiquitin-protein 99.8 1.9E-18 4.1E-23 208.0 16.4 269 575-882 202-470 (788)
18 smart00255 TIR Toll - interleu 99.8 2.9E-18 6.4E-23 168.3 10.5 135 9-145 1-139 (140)
19 KOG0618 Serine/threonine phosp 99.7 9.6E-19 2.1E-23 202.8 -2.9 314 521-864 182-507 (1081)
20 PRK15370 E3 ubiquitin-protein 99.7 6.6E-17 1.4E-21 196.4 11.8 226 573-846 198-428 (754)
21 PRK15370 E3 ubiquitin-protein 99.6 2.8E-16 6.1E-21 190.9 10.3 244 521-823 182-428 (754)
22 KOG4237 Extracellular matrix p 99.6 8.4E-17 1.8E-21 170.0 -5.7 243 518-769 68-358 (498)
23 PF13676 TIR_2: TIR domain; PD 99.4 3.7E-14 8E-19 130.5 3.3 87 12-105 1-87 (102)
24 KOG0617 Ras suppressor protein 99.4 2.3E-15 4.9E-20 141.2 -5.1 93 724-846 93-186 (264)
25 KOG4237 Extracellular matrix p 99.4 3.8E-15 8.1E-20 157.7 -4.3 132 568-700 61-199 (498)
26 KOG0617 Ras suppressor protein 99.4 6.8E-15 1.5E-19 138.0 -2.9 169 588-782 25-194 (264)
27 PRK04841 transcriptional regul 99.4 8E-12 1.7E-16 162.4 22.1 296 176-493 8-338 (903)
28 cd00116 LRR_RI Leucine-rich re 99.4 3.7E-14 8.1E-19 160.6 -1.8 255 579-848 3-293 (319)
29 cd00116 LRR_RI Leucine-rich re 99.4 4.6E-14 9.9E-19 159.9 -1.7 249 575-844 24-318 (319)
30 PRK00411 cdc6 cell division co 99.2 2.2E-09 4.8E-14 125.1 24.3 280 176-468 24-358 (394)
31 TIGR02928 orc1/cdc6 family rep 99.1 1.2E-08 2.6E-13 117.7 24.1 249 177-437 10-300 (365)
32 KOG4658 Apoptotic ATPase [Sign 99.0 1.4E-10 3.1E-15 143.7 5.2 123 575-698 524-651 (889)
33 TIGR00635 ruvB Holliday juncti 99.0 5.6E-09 1.2E-13 117.1 17.6 266 182-471 4-292 (305)
34 PF01637 Arch_ATPase: Archaeal 99.0 1.7E-09 3.7E-14 116.3 12.8 195 184-384 1-233 (234)
35 PRK00080 ruvB Holliday junctio 99.0 3.9E-09 8.5E-14 119.1 13.6 255 178-469 21-311 (328)
36 PF05729 NACHT: NACHT domain 99.0 5.1E-09 1.1E-13 106.0 12.6 143 206-354 1-163 (166)
37 TIGR03015 pepcterm_ATPase puta 98.9 4.3E-08 9.2E-13 107.9 19.9 179 205-389 43-242 (269)
38 COG3899 Predicted ATPase [Gene 98.9 8.7E-09 1.9E-13 128.6 15.7 321 183-512 1-406 (849)
39 COG2909 MalT ATP-dependent tra 98.9 2.2E-08 4.8E-13 117.7 16.6 294 176-491 13-342 (894)
40 KOG3207 Beta-tubulin folding c 98.9 3.8E-10 8.3E-15 122.0 0.3 116 730-847 219-340 (505)
41 KOG0532 Leucine-rich repeat (L 98.8 2.5E-10 5.5E-15 126.9 -3.0 79 712-796 168-246 (722)
42 KOG3678 SARM protein (with ste 98.8 2.6E-08 5.6E-13 107.5 11.3 143 7-176 610-760 (832)
43 KOG1259 Nischarin, modulator o 98.8 1.6E-09 3.5E-14 111.1 1.2 199 637-848 209-414 (490)
44 COG4886 Leucine-rich repeat (L 98.8 8.5E-09 1.9E-13 120.3 6.7 170 575-768 117-288 (394)
45 KOG0532 Leucine-rich repeat (L 98.8 7.8E-10 1.7E-14 123.1 -2.2 186 577-767 78-270 (722)
46 PRK06893 DNA replication initi 98.7 1.5E-07 3.3E-12 100.1 14.9 178 178-386 12-204 (229)
47 COG2256 MGS1 ATPase related to 98.7 9.3E-08 2E-12 103.6 12.5 171 181-380 23-207 (436)
48 COG4886 Leucine-rich repeat (L 98.7 1.3E-08 2.9E-13 118.7 5.8 184 536-752 111-296 (394)
49 KOG1259 Nischarin, modulator o 98.7 6.1E-09 1.3E-13 106.9 1.3 126 538-675 211-361 (490)
50 PF14580 LRR_9: Leucine-rich r 98.6 2.3E-08 5E-13 99.8 4.8 65 780-846 60-126 (175)
51 COG3903 Predicted ATPase [Gene 98.6 1.2E-08 2.5E-13 111.4 2.8 277 204-489 13-316 (414)
52 KOG3207 Beta-tubulin folding c 98.6 6.7E-09 1.4E-13 112.6 -1.1 105 575-679 147-259 (505)
53 PF14580 LRR_9: Leucine-rich r 98.6 3.5E-08 7.7E-13 98.4 4.0 90 584-676 7-98 (175)
54 PRK15386 type III secretion pr 98.6 1.5E-07 3.2E-12 104.9 9.2 31 833-863 156-186 (426)
55 PTZ00112 origin recognition co 98.6 9.5E-07 2.1E-11 104.9 15.9 246 177-435 750-1030(1164)
56 PRK13342 recombination factor 98.5 1.2E-06 2.6E-11 102.0 14.5 179 178-385 8-196 (413)
57 TIGR03420 DnaA_homol_Hda DnaA 98.5 2.5E-06 5.4E-11 91.2 15.5 174 181-387 14-203 (226)
58 KOG1909 Ran GTPase-activating 98.4 1E-08 2.3E-13 108.3 -3.9 245 594-845 28-310 (382)
59 KOG2120 SCF ubiquitin ligase, 98.4 6.2E-09 1.3E-13 107.1 -5.6 177 596-794 185-373 (419)
60 PLN03150 hypothetical protein; 98.4 3.6E-07 7.9E-12 111.7 8.6 111 735-850 420-532 (623)
61 PRK15386 type III secretion pr 98.4 1.2E-06 2.7E-11 97.8 11.0 140 662-843 48-187 (426)
62 KOG1909 Ran GTPase-activating 98.4 1.2E-08 2.5E-13 108.0 -5.8 252 536-823 25-311 (382)
63 PF05496 RuvB_N: Holliday junc 98.4 2.5E-06 5.4E-11 86.9 10.7 182 177-389 19-225 (233)
64 PRK12402 replication factor C 98.3 1E-05 2.2E-10 92.4 17.1 199 178-382 11-223 (337)
65 PRK08727 hypothetical protein; 98.3 1.6E-05 3.4E-10 84.9 16.4 169 181-381 18-200 (233)
66 PRK00440 rfc replication facto 98.3 3E-05 6.5E-10 87.7 19.7 184 178-381 13-199 (319)
67 PRK07003 DNA polymerase III su 98.3 2.5E-05 5.5E-10 93.0 18.8 185 177-384 11-220 (830)
68 PRK14961 DNA polymerase III su 98.3 4.5E-05 9.7E-10 87.2 20.5 192 178-381 12-216 (363)
69 PRK14960 DNA polymerase III su 98.3 3.3E-05 7.2E-10 91.1 19.5 181 178-381 11-215 (702)
70 PRK14963 DNA polymerase III su 98.3 3.7E-05 8E-10 90.7 20.2 196 177-382 9-214 (504)
71 PTZ00202 tuzin; Provisional 98.3 3.8E-05 8.2E-10 85.2 18.3 196 147-353 220-433 (550)
72 PLN03025 replication factor C 98.3 1E-05 2.2E-10 91.0 14.4 184 177-380 8-195 (319)
73 PRK04195 replication factor C 98.3 3E-05 6.5E-10 92.2 18.9 181 177-382 9-199 (482)
74 PRK14949 DNA polymerase III su 98.3 2.1E-05 4.5E-10 95.6 17.1 185 178-381 12-216 (944)
75 PLN03150 hypothetical protein; 98.2 1.9E-06 4.1E-11 105.5 8.4 107 712-822 420-527 (623)
76 KOG0531 Protein phosphatase 1, 98.2 2.4E-07 5.1E-12 108.4 0.3 56 595-651 71-127 (414)
77 PRK07471 DNA polymerase III su 98.2 4.6E-05 9.9E-10 86.2 18.6 202 177-386 14-239 (365)
78 KOG0531 Protein phosphatase 1, 98.2 2E-07 4.3E-12 109.0 -0.4 99 575-676 96-196 (414)
79 PF13191 AAA_16: AAA ATPase do 98.2 2.4E-06 5.3E-11 88.0 7.6 50 183-232 1-51 (185)
80 TIGR01242 26Sp45 26S proteasom 98.2 4.8E-06 1E-10 95.5 10.4 173 180-379 120-328 (364)
81 PRK08903 DnaA regulatory inact 98.2 2.4E-05 5.1E-10 83.6 14.7 175 180-389 16-203 (227)
82 PRK05642 DNA replication initi 98.2 3.5E-05 7.6E-10 82.2 15.8 150 206-385 46-208 (234)
83 PF13173 AAA_14: AAA domain 98.2 1.1E-05 2.3E-10 77.5 10.4 119 206-346 3-127 (128)
84 cd00009 AAA The AAA+ (ATPases 98.2 1.3E-05 2.9E-10 78.8 11.5 123 185-325 1-131 (151)
85 COG1474 CDC6 Cdc6-related prot 98.2 0.0001 2.3E-09 83.2 19.9 247 177-437 12-291 (366)
86 PRK12323 DNA polymerase III su 98.2 3.4E-05 7.4E-10 90.8 16.3 198 177-382 11-222 (700)
87 PRK08084 DNA replication initi 98.2 8.4E-05 1.8E-09 79.4 18.0 151 205-385 45-209 (235)
88 PRK09087 hypothetical protein; 98.2 2.5E-05 5.4E-10 82.5 13.7 141 205-384 44-194 (226)
89 PRK14957 DNA polymerase III su 98.2 4.3E-05 9.4E-10 90.2 17.0 185 178-385 12-221 (546)
90 PF13401 AAA_22: AAA domain; P 98.1 7.2E-06 1.6E-10 79.1 8.6 112 205-323 4-125 (131)
91 KOG2120 SCF ubiquitin ligase, 98.1 2.8E-08 6E-13 102.4 -8.8 63 619-681 185-249 (419)
92 KOG2982 Uncharacterized conser 98.1 9E-07 1.9E-11 91.5 2.1 210 576-851 47-267 (418)
93 PRK05564 DNA polymerase III su 98.1 6E-05 1.3E-09 84.6 16.8 178 182-385 4-190 (313)
94 PRK14962 DNA polymerase III su 98.1 0.00017 3.7E-09 84.4 20.9 188 177-387 9-221 (472)
95 PRK14956 DNA polymerase III su 98.1 4.8E-05 1E-09 87.4 15.5 189 177-380 13-217 (484)
96 PRK14964 DNA polymerase III su 98.1 0.00018 4E-09 83.7 20.2 181 178-381 9-213 (491)
97 TIGR02397 dnaX_nterm DNA polym 98.1 0.00012 2.6E-09 84.2 18.7 186 177-385 9-218 (355)
98 KOG2028 ATPase related to the 98.1 1.8E-05 3.9E-10 84.2 10.5 150 179-353 135-293 (554)
99 PRK13341 recombination factor 98.1 3.7E-05 7.9E-10 94.2 14.8 173 178-380 24-212 (725)
100 PF13855 LRR_8: Leucine rich r 98.1 4.5E-06 9.7E-11 68.2 4.7 58 711-768 2-60 (61)
101 PRK07940 DNA polymerase III su 98.1 7.1E-05 1.5E-09 85.4 15.6 178 182-385 5-213 (394)
102 PRK07994 DNA polymerase III su 98.1 8.1E-05 1.8E-09 89.3 16.6 194 177-382 11-217 (647)
103 PRK08691 DNA polymerase III su 98.1 5.8E-05 1.3E-09 90.0 15.1 183 177-382 11-217 (709)
104 PF00308 Bac_DnaA: Bacterial d 98.0 7.5E-05 1.6E-09 78.7 14.4 159 205-384 34-207 (219)
105 PRK06645 DNA polymerase III su 98.0 0.00015 3.3E-09 85.1 18.4 186 177-381 16-225 (507)
106 KOG4341 F-box protein containi 98.0 2E-07 4.4E-12 100.8 -5.2 116 731-847 292-415 (483)
107 PRK09112 DNA polymerase III su 98.0 9.9E-05 2.1E-09 83.1 15.6 198 177-386 18-241 (351)
108 PRK14951 DNA polymerase III su 98.0 0.00019 4.1E-09 86.0 18.3 194 178-382 12-222 (618)
109 PF14516 AAA_35: AAA-like doma 98.0 0.0011 2.3E-08 74.8 23.2 278 177-477 6-322 (331)
110 PRK03992 proteasome-activating 98.0 5.2E-05 1.1E-09 87.3 12.8 154 180-356 129-317 (389)
111 PRK14958 DNA polymerase III su 97.9 0.00035 7.6E-09 82.8 19.2 182 177-381 11-216 (509)
112 TIGR00678 holB DNA polymerase 97.9 0.00026 5.7E-09 73.0 16.1 90 284-381 95-187 (188)
113 COG2255 RuvB Holliday junction 97.9 0.00029 6.3E-09 73.4 15.8 260 178-473 22-316 (332)
114 KOG4341 F-box protein containi 97.9 2.4E-07 5.1E-12 100.3 -6.9 249 597-866 139-413 (483)
115 PRK05896 DNA polymerase III su 97.9 9.7E-05 2.1E-09 87.2 14.0 197 177-385 11-221 (605)
116 PRK14087 dnaA chromosomal repl 97.9 0.00018 3.9E-09 84.1 15.6 164 206-386 142-320 (450)
117 PRK14955 DNA polymerase III su 97.9 0.00028 6E-09 81.7 16.9 199 177-381 11-224 (397)
118 PF13855 LRR_8: Leucine rich r 97.9 1.3E-05 2.7E-10 65.6 3.7 60 733-795 1-60 (61)
119 KOG1859 Leucine-rich repeat pr 97.9 2.8E-07 6E-12 105.7 -8.3 125 711-845 165-291 (1096)
120 PRK09111 DNA polymerase III su 97.9 0.00072 1.6E-08 81.3 20.0 200 177-383 19-231 (598)
121 PRK14959 DNA polymerase III su 97.9 0.00039 8.4E-09 82.7 17.4 199 178-388 12-224 (624)
122 PRK14970 DNA polymerase III su 97.8 0.00029 6.3E-09 81.2 16.0 183 177-381 12-205 (367)
123 PRK14954 DNA polymerase III su 97.8 0.00083 1.8E-08 80.9 19.9 197 178-380 12-223 (620)
124 PRK07764 DNA polymerase III su 97.8 0.00063 1.4E-08 84.6 19.4 180 178-380 11-216 (824)
125 PRK14969 DNA polymerase III su 97.8 0.00028 6.2E-09 84.1 15.8 180 178-380 12-215 (527)
126 PRK14952 DNA polymerase III su 97.8 0.00092 2E-08 79.9 19.7 196 178-385 9-220 (584)
127 TIGR02881 spore_V_K stage V sp 97.8 0.00024 5.2E-09 77.4 13.8 153 183-355 7-192 (261)
128 PRK07133 DNA polymerase III su 97.8 0.00046 1E-08 83.4 16.7 195 177-385 13-220 (725)
129 PRK08451 DNA polymerase III su 97.8 0.00071 1.5E-08 79.6 17.8 185 178-382 10-215 (535)
130 PRK06620 hypothetical protein; 97.8 0.00014 3E-09 76.2 10.5 133 206-381 45-185 (214)
131 KOG1859 Leucine-rich repeat pr 97.8 1.4E-06 3E-11 100.2 -4.8 53 598-651 166-218 (1096)
132 PHA02544 44 clamp loader, smal 97.8 0.00029 6.3E-09 79.4 13.9 152 177-352 16-171 (316)
133 PRK14950 DNA polymerase III su 97.8 0.0012 2.5E-08 80.4 19.8 197 177-384 11-220 (585)
134 TIGR02639 ClpA ATP-dependent C 97.7 0.00044 9.6E-09 86.5 16.3 170 160-354 164-358 (731)
135 TIGR03345 VI_ClpV1 type VI sec 97.7 0.00042 9.1E-09 87.3 16.0 191 160-378 169-389 (852)
136 TIGR03689 pup_AAA proteasome A 97.7 0.00037 8E-09 81.5 13.6 162 180-354 180-378 (512)
137 TIGR00362 DnaA chromosomal rep 97.7 0.00077 1.7E-08 78.6 16.5 158 205-383 136-308 (405)
138 PRK06305 DNA polymerase III su 97.7 0.0014 2.9E-08 76.9 18.1 182 178-380 13-217 (451)
139 PRK14953 DNA polymerase III su 97.7 0.0017 3.7E-08 76.6 18.8 192 178-383 12-218 (486)
140 PRK00149 dnaA chromosomal repl 97.7 0.00066 1.4E-08 80.2 15.6 157 205-382 148-319 (450)
141 PRK14088 dnaA chromosomal repl 97.7 0.00065 1.4E-08 79.4 15.2 159 205-383 130-303 (440)
142 PTZ00454 26S protease regulato 97.7 0.00052 1.1E-08 78.6 13.9 155 179-355 142-330 (398)
143 KOG2982 Uncharacterized conser 97.7 3.6E-06 7.8E-11 87.2 -3.3 82 571-652 68-156 (418)
144 PRK06647 DNA polymerase III su 97.6 0.003 6.5E-08 75.8 20.5 192 177-382 11-217 (563)
145 PRK09376 rho transcription ter 97.6 8.4E-05 1.8E-09 82.5 6.8 89 205-295 169-266 (416)
146 TIGR02903 spore_lon_C ATP-depe 97.6 0.0005 1.1E-08 83.6 14.1 50 178-229 150-199 (615)
147 PRK10865 protein disaggregatio 97.6 0.0017 3.6E-08 82.3 18.6 66 160-231 160-225 (857)
148 PF08937 DUF1863: MTH538 TIR-l 97.6 0.00013 2.8E-09 70.0 6.8 89 10-103 1-106 (130)
149 PRK14948 DNA polymerase III su 97.6 0.002 4.3E-08 78.2 18.4 196 178-384 12-221 (620)
150 PRK14971 DNA polymerase III su 97.6 0.004 8.8E-08 75.6 21.0 179 178-380 13-217 (614)
151 KOG0989 Replication factor C, 97.6 0.0019 4.1E-08 68.3 15.3 192 177-385 31-231 (346)
152 TIGR03346 chaperone_ClpB ATP-d 97.6 0.0029 6.4E-08 80.5 20.3 169 160-354 155-349 (852)
153 CHL00095 clpC Clp protease ATP 97.6 0.00094 2E-08 84.6 15.5 171 159-353 160-353 (821)
154 cd01128 rho_factor Transcripti 97.5 0.00018 4E-09 76.7 7.6 89 205-295 16-113 (249)
155 PTZ00361 26 proteosome regulat 97.5 0.00023 4.9E-09 82.1 8.8 156 180-356 181-369 (438)
156 PRK12422 chromosomal replicati 97.5 0.0014 3E-08 76.5 15.4 153 206-379 142-307 (445)
157 PRK07399 DNA polymerase III su 97.5 0.0096 2.1E-07 66.2 20.9 193 182-385 4-221 (314)
158 PRK05707 DNA polymerase III su 97.5 0.0028 6.1E-08 70.8 16.6 94 286-385 107-203 (328)
159 PRK05563 DNA polymerase III su 97.5 0.0038 8.3E-08 75.1 18.9 193 177-381 11-216 (559)
160 CHL00181 cbbX CbbX; Provisiona 97.5 0.0022 4.7E-08 70.5 15.1 132 206-356 60-211 (287)
161 CHL00176 ftsH cell division pr 97.5 0.0023 5E-08 77.7 16.6 173 180-377 181-386 (638)
162 PF12799 LRR_4: Leucine Rich r 97.5 0.00011 2.3E-09 55.1 3.2 37 810-846 1-37 (44)
163 COG1222 RPT1 ATP-dependent 26S 97.5 0.0015 3.2E-08 70.6 12.9 169 182-379 151-357 (406)
164 TIGR02880 cbbX_cfxQ probable R 97.4 0.0029 6.4E-08 69.5 15.7 130 207-355 60-209 (284)
165 PRK14086 dnaA chromosomal repl 97.4 0.0025 5.4E-08 75.7 15.5 155 206-381 315-484 (617)
166 TIGR00767 rho transcription te 97.4 0.00031 6.8E-09 78.5 7.6 89 205-295 168-265 (415)
167 PF05673 DUF815: Protein of un 97.4 0.0068 1.5E-07 63.2 16.6 57 177-233 22-80 (249)
168 KOG2227 Pre-initiation complex 97.3 0.0028 6.1E-08 70.7 13.7 217 164-388 135-375 (529)
169 PRK14965 DNA polymerase III su 97.3 0.0031 6.6E-08 76.4 15.2 195 177-385 11-221 (576)
170 PF00004 AAA: ATPase family as 97.3 0.00099 2.1E-08 64.1 9.1 23 208-230 1-23 (132)
171 PRK08116 hypothetical protein; 97.3 0.0011 2.4E-08 72.1 10.0 103 206-324 115-221 (268)
172 TIGR01241 FtsH_fam ATP-depende 97.3 0.0021 4.5E-08 77.0 12.9 173 181-378 54-259 (495)
173 PF12799 LRR_4: Leucine Rich r 97.2 0.00013 2.7E-09 54.7 1.3 34 597-630 2-35 (44)
174 COG3267 ExeA Type II secretory 97.2 0.013 2.7E-07 60.9 15.9 197 184-387 30-247 (269)
175 PF08357 SEFIR: SEFIR domain; 97.2 0.00046 9.9E-09 68.3 5.0 65 11-75 2-70 (150)
176 PF05621 TniB: Bacterial TniB 97.2 0.0069 1.5E-07 65.2 14.1 199 182-385 34-261 (302)
177 PRK11034 clpA ATP-dependent Cl 97.2 0.0023 5E-08 79.1 11.8 65 160-230 168-232 (758)
178 KOG3665 ZYG-1-like serine/thre 97.1 0.00015 3.2E-09 88.6 0.8 109 732-846 147-263 (699)
179 PRK12377 putative replication 97.1 0.0052 1.1E-07 65.6 12.2 36 205-240 101-136 (248)
180 CHL00195 ycf46 Ycf46; Provisio 97.1 0.0046 1E-07 72.6 12.5 155 181-356 227-407 (489)
181 COG0593 DnaA ATPase involved i 97.0 0.0049 1.1E-07 69.6 12.1 134 205-356 113-259 (408)
182 TIGR00602 rad24 checkpoint pro 97.0 0.0077 1.7E-07 72.6 14.4 53 177-229 79-134 (637)
183 KOG2543 Origin recognition com 97.0 0.0029 6.3E-08 68.9 9.7 165 181-353 5-192 (438)
184 COG5238 RNA1 Ran GTPase-activa 97.0 5.2E-05 1.1E-09 77.8 -3.5 145 613-768 86-253 (388)
185 smart00382 AAA ATPases associa 97.0 0.0017 3.7E-08 63.1 7.0 34 206-239 3-36 (148)
186 KOG3665 ZYG-1-like serine/thre 97.0 0.00018 4E-09 87.8 0.0 80 687-767 146-230 (699)
187 TIGR01243 CDC48 AAA family ATP 97.0 0.0046 9.9E-08 77.8 12.3 175 181-379 177-381 (733)
188 PRK06921 hypothetical protein; 96.9 0.002 4.2E-08 70.0 7.2 36 205-240 117-153 (266)
189 PRK08769 DNA polymerase III su 96.9 0.017 3.7E-07 64.0 14.7 95 284-386 112-209 (319)
190 TIGR01243 CDC48 AAA family ATP 96.9 0.0083 1.8E-07 75.5 13.9 172 182-379 453-657 (733)
191 COG1373 Predicted ATPase (AAA+ 96.9 0.01 2.2E-07 68.4 13.2 148 207-385 39-192 (398)
192 PRK08181 transposase; Validate 96.9 0.0015 3.1E-08 70.7 5.7 35 206-240 107-141 (269)
193 PRK10536 hypothetical protein; 96.9 0.0041 8.8E-08 65.6 8.8 138 181-325 54-214 (262)
194 PRK11331 5-methylcytosine-spec 96.9 0.0018 4E-08 73.7 6.7 55 182-240 175-231 (459)
195 TIGR02639 ClpA ATP-dependent C 96.8 0.012 2.6E-07 73.8 14.6 49 182-230 454-509 (731)
196 PLN00020 ribulose bisphosphate 96.8 0.015 3.2E-07 64.2 12.9 31 203-233 146-176 (413)
197 KOG0991 Replication factor C, 96.8 0.0095 2.1E-07 60.3 10.4 52 177-230 22-73 (333)
198 PF01695 IstB_IS21: IstB-like 96.8 0.0016 3.6E-08 66.0 5.3 36 205-240 47-82 (178)
199 PRK08058 DNA polymerase III su 96.8 0.017 3.8E-07 65.0 13.8 146 183-353 6-181 (329)
200 PRK06090 DNA polymerase III su 96.8 0.073 1.6E-06 59.0 18.3 93 284-386 107-202 (319)
201 KOG1644 U2-associated snRNP A' 96.8 0.0025 5.4E-08 63.3 6.0 56 711-767 43-98 (233)
202 PRK07952 DNA replication prote 96.7 0.01 2.2E-07 63.2 11.0 36 205-240 99-134 (244)
203 PRK10865 protein disaggregatio 96.7 0.016 3.5E-07 73.6 14.4 50 182-231 568-624 (857)
204 PRK08118 topology modulation p 96.7 0.0042 9E-08 62.4 7.3 32 207-238 3-37 (167)
205 PRK06871 DNA polymerase III su 96.7 0.05 1.1E-06 60.4 16.4 92 284-382 106-200 (325)
206 COG1223 Predicted ATPase (AAA+ 96.7 0.013 2.7E-07 60.4 10.5 172 182-378 121-318 (368)
207 PF10443 RNA12: RNA12 protein; 96.7 0.12 2.7E-06 58.3 19.1 174 285-469 148-370 (431)
208 TIGR02640 gas_vesic_GvpN gas v 96.7 0.021 4.4E-07 62.2 13.0 24 207-230 23-46 (262)
209 COG0542 clpA ATP-binding subun 96.7 0.01 2.2E-07 72.1 11.3 119 182-309 491-618 (786)
210 KOG0731 AAA+-type ATPase conta 96.7 0.036 7.9E-07 66.9 15.7 180 179-381 308-520 (774)
211 PRK09183 transposase/IS protei 96.6 0.0055 1.2E-07 66.3 8.3 34 206-239 103-136 (259)
212 PRK07993 DNA polymerase III su 96.6 0.042 9.2E-07 61.7 15.3 93 284-383 107-202 (334)
213 PF02562 PhoH: PhoH-like prote 96.6 0.005 1.1E-07 63.2 7.0 119 204-325 18-157 (205)
214 COG2607 Predicted ATPase (AAA+ 96.5 0.03 6.5E-07 57.3 11.9 56 180-235 58-115 (287)
215 TIGR03345 VI_ClpV1 type VI sec 96.5 0.012 2.5E-07 74.6 11.2 50 182-231 566-622 (852)
216 TIGR03346 chaperone_ClpB ATP-d 96.5 0.01 2.3E-07 75.5 10.8 51 182-232 565-622 (852)
217 PRK06526 transposase; Provisio 96.5 0.0024 5.2E-08 68.6 4.2 34 205-238 98-131 (254)
218 PRK07261 topology modulation p 96.5 0.0087 1.9E-07 60.5 8.0 23 207-229 2-24 (171)
219 KOG4579 Leucine-rich repeat (L 96.5 0.00035 7.6E-09 64.6 -2.0 78 575-652 54-133 (177)
220 PRK11889 flhF flagellar biosyn 96.5 0.064 1.4E-06 60.1 15.1 37 204-240 240-276 (436)
221 KOG4579 Leucine-rich repeat (L 96.5 0.00016 3.4E-09 66.8 -4.2 38 807-844 97-134 (177)
222 COG5238 RNA1 Ran GTPase-activa 96.4 0.00022 4.9E-09 73.3 -4.0 244 594-844 28-314 (388)
223 TIGR00763 lon ATP-dependent pr 96.4 0.058 1.3E-06 68.2 16.4 79 154-233 282-375 (775)
224 PRK06964 DNA polymerase III su 96.4 0.15 3.2E-06 57.2 17.7 93 284-386 131-226 (342)
225 KOG0733 Nuclear AAA ATPase (VC 96.4 0.033 7.1E-07 64.3 12.4 154 181-355 189-375 (802)
226 KOG2228 Origin recognition com 96.4 0.041 8.8E-07 59.2 12.1 172 181-353 23-218 (408)
227 KOG2739 Leucine-rich acidic nu 96.3 0.0026 5.5E-08 66.1 3.1 108 755-869 41-158 (260)
228 KOG0741 AAA+-type ATPase [Post 96.3 0.028 6.1E-07 63.6 11.3 130 203-353 536-685 (744)
229 CHL00095 clpC Clp protease ATP 96.3 0.015 3.2E-07 73.9 10.6 133 182-323 509-661 (821)
230 cd01133 F1-ATPase_beta F1 ATP 96.3 0.013 2.9E-07 62.8 8.6 89 205-295 69-173 (274)
231 PF13207 AAA_17: AAA domain; P 96.3 0.0035 7.6E-08 59.3 3.7 23 207-229 1-23 (121)
232 cd01131 PilT Pilus retraction 96.3 0.013 2.8E-07 60.8 8.1 110 206-327 2-112 (198)
233 smart00763 AAA_PrkA PrkA AAA d 96.3 0.0046 1E-07 68.6 4.9 48 183-230 52-103 (361)
234 PRK04132 replication factor C 96.3 0.12 2.6E-06 64.4 17.6 151 211-381 570-727 (846)
235 PRK06835 DNA replication prote 96.3 0.0085 1.8E-07 66.9 7.0 35 206-240 184-218 (329)
236 PF04665 Pox_A32: Poxvirus A32 96.3 0.0052 1.1E-07 64.5 5.0 34 207-240 15-48 (241)
237 PRK12608 transcription termina 96.2 0.016 3.5E-07 64.6 9.0 88 206-295 134-230 (380)
238 COG0470 HolB ATPase involved i 96.2 0.03 6.5E-07 63.4 11.5 140 183-341 2-168 (325)
239 PRK10787 DNA-binding ATP-depen 96.2 0.069 1.5E-06 66.9 15.2 79 154-233 284-377 (784)
240 KOG1644 U2-associated snRNP A' 96.2 0.0053 1.1E-07 61.1 4.3 102 574-675 42-149 (233)
241 COG1618 Predicted nucleotide k 96.2 0.0054 1.2E-07 58.8 4.1 39 206-244 6-46 (179)
242 PRK00771 signal recognition pa 96.2 0.15 3.3E-06 59.1 16.8 29 204-232 94-122 (437)
243 PRK10733 hflB ATP-dependent me 96.1 0.041 8.9E-07 67.8 12.5 129 206-356 186-337 (644)
244 PF13177 DNA_pol3_delta2: DNA 96.1 0.074 1.6E-06 53.1 12.2 138 186-341 1-161 (162)
245 KOG0735 AAA+-type ATPase [Post 96.1 0.096 2.1E-06 61.7 14.3 161 205-385 431-616 (952)
246 PF00158 Sigma54_activat: Sigm 96.1 0.03 6.5E-07 56.2 9.1 45 184-228 1-45 (168)
247 cd00561 CobA_CobO_BtuR ATP:cor 96.0 0.017 3.8E-07 56.7 6.9 35 206-240 3-37 (159)
248 TIGR02902 spore_lonB ATP-depen 96.0 0.077 1.7E-06 63.8 13.8 49 179-229 62-110 (531)
249 PRK06696 uridine kinase; Valid 96.0 0.011 2.3E-07 62.8 5.9 46 187-232 3-49 (223)
250 KOG2739 Leucine-rich acidic nu 96.0 0.0036 7.8E-08 65.0 2.0 37 731-767 63-101 (260)
251 PHA00729 NTP-binding motif con 95.9 0.022 4.9E-07 59.2 7.8 27 204-230 16-42 (226)
252 KOG0744 AAA+-type ATPase [Post 95.9 0.034 7.4E-07 59.3 9.1 36 205-240 177-216 (423)
253 PF07728 AAA_5: AAA domain (dy 95.9 0.0044 9.6E-08 60.3 2.5 22 208-229 2-23 (139)
254 PRK05541 adenylylsulfate kinas 95.9 0.012 2.6E-07 59.9 5.8 36 205-240 7-42 (176)
255 PRK07667 uridine kinase; Provi 95.9 0.015 3.2E-07 60.2 6.4 42 191-232 3-44 (193)
256 cd01120 RecA-like_NTPases RecA 95.9 0.028 6.2E-07 56.1 8.4 34 207-240 1-34 (165)
257 PRK09361 radB DNA repair and r 95.9 0.03 6.4E-07 59.6 8.7 49 192-240 10-58 (225)
258 KOG0728 26S proteasome regulat 95.8 0.17 3.6E-06 51.9 13.1 146 186-356 151-333 (404)
259 KOG2123 Uncharacterized conser 95.8 0.001 2.2E-08 68.9 -2.5 100 538-648 16-123 (388)
260 PRK14974 cell division protein 95.8 0.091 2E-06 58.7 12.5 29 204-232 139-167 (336)
261 KOG0730 AAA+-type ATPase [Post 95.8 0.07 1.5E-06 62.6 11.7 152 186-358 438-619 (693)
262 COG2812 DnaX DNA polymerase II 95.8 0.053 1.1E-06 63.4 10.9 187 178-377 12-212 (515)
263 KOG0743 AAA+-type ATPase [Post 95.7 0.1 2.2E-06 58.8 12.4 150 205-388 235-412 (457)
264 KOG1947 Leucine rich repeat pr 95.7 0.0012 2.6E-08 79.4 -3.0 34 618-651 187-223 (482)
265 PRK11034 clpA ATP-dependent Cl 95.7 0.029 6.4E-07 69.6 9.0 49 182-230 458-513 (758)
266 PRK08939 primosomal protein Dn 95.7 0.017 3.7E-07 64.0 6.1 36 205-240 156-191 (306)
267 TIGR00064 ftsY signal recognit 95.7 0.048 1E-06 59.4 9.5 37 203-239 70-106 (272)
268 PF00406 ADK: Adenylate kinase 95.7 0.027 5.8E-07 55.7 7.0 89 210-306 1-94 (151)
269 TIGR02237 recomb_radB DNA repa 95.7 0.031 6.7E-07 58.7 7.8 44 197-240 4-47 (209)
270 COG0464 SpoVK ATPases of the A 95.7 0.11 2.4E-06 62.4 13.5 154 182-356 242-425 (494)
271 TIGR01359 UMP_CMP_kin_fam UMP- 95.6 0.045 9.8E-07 56.1 8.5 23 207-229 1-23 (183)
272 cd01394 radB RadB. The archaea 95.5 0.052 1.1E-06 57.4 9.0 50 191-240 5-54 (218)
273 TIGR01817 nifA Nif-specific re 95.5 0.24 5.3E-06 60.1 15.7 50 180-229 194-243 (534)
274 cd01121 Sms Sms (bacterial rad 95.5 0.041 8.9E-07 62.6 8.4 50 191-240 68-117 (372)
275 PRK12337 2-phosphoglycerate ki 95.5 0.026 5.7E-07 64.6 6.6 26 204-229 254-279 (475)
276 PRK04296 thymidine kinase; Pro 95.5 0.029 6.2E-07 57.8 6.4 110 206-325 3-117 (190)
277 PF14532 Sigma54_activ_2: Sigm 95.4 0.014 2.9E-07 56.8 3.7 45 185-229 1-45 (138)
278 COG1484 DnaC DNA replication p 95.4 0.032 7E-07 60.1 6.9 37 204-240 104-140 (254)
279 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.4 0.041 8.9E-07 53.8 7.0 104 205-329 26-132 (144)
280 PRK08699 DNA polymerase III su 95.4 0.14 3E-06 57.3 12.0 85 287-381 115-202 (325)
281 cd01393 recA_like RecA is a b 95.4 0.062 1.3E-06 57.2 9.0 49 192-240 6-60 (226)
282 KOG0733 Nuclear AAA ATPase (VC 95.4 0.071 1.5E-06 61.6 9.5 130 205-355 545-693 (802)
283 PF00448 SRP54: SRP54-type pro 95.3 0.035 7.5E-07 57.3 6.5 35 206-240 2-36 (196)
284 TIGR00959 ffh signal recogniti 95.3 0.3 6.4E-06 56.6 14.6 27 204-230 98-124 (428)
285 cd03228 ABCC_MRP_Like The MRP 95.3 0.068 1.5E-06 54.1 8.4 124 205-338 28-167 (171)
286 cd03247 ABCC_cytochrome_bd The 95.2 0.11 2.3E-06 53.0 9.8 125 205-339 28-170 (178)
287 PF13604 AAA_30: AAA domain; P 95.2 0.076 1.6E-06 55.0 8.6 46 191-239 7-52 (196)
288 PF01583 APS_kinase: Adenylyls 95.2 0.03 6.5E-07 54.8 5.3 35 206-240 3-37 (156)
289 PF13238 AAA_18: AAA domain; P 95.2 0.016 3.5E-07 55.3 3.5 22 208-229 1-22 (129)
290 COG0542 clpA ATP-binding subun 95.2 0.14 3.1E-06 62.4 11.9 156 180-354 168-346 (786)
291 KOG2123 Uncharacterized conser 95.2 0.00068 1.5E-08 70.1 -6.4 97 575-672 20-123 (388)
292 TIGR01420 pilT_fam pilus retra 95.1 0.047 1E-06 61.9 7.5 107 206-324 123-230 (343)
293 cd03214 ABC_Iron-Siderophores_ 95.1 0.088 1.9E-06 53.8 8.7 123 205-328 25-162 (180)
294 COG0466 Lon ATP-dependent Lon 95.1 0.086 1.9E-06 62.5 9.5 158 182-354 323-508 (782)
295 KOG1947 Leucine rich repeat pr 95.1 0.0027 5.8E-08 76.4 -2.9 108 595-702 187-308 (482)
296 COG1066 Sms Predicted ATP-depe 95.1 0.075 1.6E-06 59.0 8.4 49 191-240 79-127 (456)
297 TIGR03574 selen_PSTK L-seryl-t 95.1 0.047 1E-06 59.1 7.0 26 207-232 1-26 (249)
298 KOG1969 DNA replication checkp 95.1 0.059 1.3E-06 63.7 7.9 74 201-295 322-397 (877)
299 COG4608 AppF ABC-type oligopep 95.1 0.057 1.2E-06 57.1 7.2 123 205-330 39-176 (268)
300 COG0563 Adk Adenylate kinase a 95.1 0.059 1.3E-06 54.5 7.1 94 207-307 2-99 (178)
301 PF00485 PRK: Phosphoribulokin 95.0 0.021 4.5E-07 59.2 3.9 26 207-232 1-26 (194)
302 PRK15455 PrkA family serine pr 95.0 0.024 5.3E-07 66.2 4.6 50 182-231 76-129 (644)
303 cd03216 ABC_Carb_Monos_I This 95.0 0.051 1.1E-06 54.4 6.5 116 206-328 27-146 (163)
304 COG4088 Predicted nucleotide k 95.0 0.047 1E-06 54.5 5.8 31 206-236 2-32 (261)
305 cd03238 ABC_UvrA The excision 95.0 0.1 2.2E-06 52.7 8.6 127 205-339 21-162 (176)
306 PF07726 AAA_3: ATPase family 95.0 0.015 3.2E-07 54.3 2.2 29 208-236 2-30 (131)
307 cd03223 ABCD_peroxisomal_ALDP 94.9 0.057 1.2E-06 54.3 6.7 126 205-338 27-160 (166)
308 PRK11608 pspF phage shock prot 94.9 0.064 1.4E-06 60.4 7.7 47 182-228 6-52 (326)
309 PRK13531 regulatory ATPase Rav 94.9 0.04 8.7E-07 63.7 5.9 46 182-231 20-65 (498)
310 KOG1514 Origin recognition com 94.8 0.7 1.5E-05 54.9 15.7 200 180-387 394-623 (767)
311 TIGR01425 SRP54_euk signal rec 94.8 0.16 3.6E-06 58.3 10.6 29 204-232 99-127 (429)
312 PRK12726 flagellar biosynthesi 94.7 0.47 1E-05 53.3 13.5 37 204-240 205-241 (407)
313 KOG0729 26S proteasome regulat 94.7 0.065 1.4E-06 55.3 6.3 54 184-242 179-243 (435)
314 PRK00279 adk adenylate kinase; 94.7 0.07 1.5E-06 56.3 6.9 23 207-229 2-24 (215)
315 PTZ00088 adenylate kinase 1; P 94.7 0.095 2.1E-06 55.4 7.8 22 208-229 9-30 (229)
316 KOG0652 26S proteasome regulat 94.7 0.45 9.8E-06 49.2 12.1 141 205-370 205-372 (424)
317 TIGR02012 tigrfam_recA protein 94.7 0.1 2.2E-06 57.8 8.2 50 191-240 40-90 (321)
318 PTZ00301 uridine kinase; Provi 94.7 0.029 6.3E-07 58.4 3.8 29 205-233 3-31 (210)
319 PRK12724 flagellar biosynthesi 94.7 0.42 9.2E-06 54.5 13.2 25 205-229 223-247 (432)
320 PRK12723 flagellar biosynthesi 94.7 0.45 9.7E-06 54.4 13.6 27 204-230 173-199 (388)
321 cd03246 ABCC_Protease_Secretio 94.6 0.099 2.2E-06 53.0 7.6 125 205-338 28-168 (173)
322 COG0572 Udk Uridine kinase [Nu 94.6 0.039 8.5E-07 56.7 4.5 30 203-232 6-35 (218)
323 cd02019 NK Nucleoside/nucleoti 94.6 0.029 6.3E-07 46.9 2.9 23 207-229 1-23 (69)
324 PF08433 KTI12: Chromatin asso 94.6 0.085 1.8E-06 57.2 7.2 27 206-232 2-28 (270)
325 PRK10867 signal recognition pa 94.6 0.23 5E-06 57.5 11.1 29 204-232 99-127 (433)
326 PRK14528 adenylate kinase; Pro 94.5 0.1 2.2E-06 53.5 7.5 24 206-229 2-25 (186)
327 PF00910 RNA_helicase: RNA hel 94.5 0.023 5.1E-07 52.3 2.4 26 208-233 1-26 (107)
328 KOG0734 AAA+-type ATPase conta 94.5 0.2 4.2E-06 57.2 9.9 147 182-354 304-484 (752)
329 PRK15429 formate hydrogenlyase 94.5 0.12 2.6E-06 64.8 9.4 49 181-229 375-423 (686)
330 KOG2035 Replication factor C, 94.5 0.13 2.9E-06 53.8 7.9 209 181-405 12-259 (351)
331 TIGR01351 adk adenylate kinase 94.5 0.1 2.2E-06 54.8 7.5 22 208-229 2-23 (210)
332 cd02027 APSK Adenosine 5'-phos 94.5 0.25 5.3E-06 48.6 9.8 24 207-230 1-24 (149)
333 cd00983 recA RecA is a bacter 94.5 0.13 2.8E-06 57.0 8.5 51 190-240 39-90 (325)
334 PRK06762 hypothetical protein; 94.5 0.033 7.2E-07 56.0 3.6 24 206-229 3-26 (166)
335 PRK09270 nucleoside triphospha 94.4 0.05 1.1E-06 58.0 5.1 32 202-233 30-61 (229)
336 PRK03839 putative kinase; Prov 94.4 0.03 6.6E-07 57.2 3.3 24 207-230 2-25 (180)
337 PF10137 TIR-like: Predicted n 94.4 0.1 2.2E-06 49.0 6.3 62 11-75 1-62 (125)
338 cd03222 ABC_RNaseL_inhibitor T 94.4 0.13 2.7E-06 52.1 7.6 114 206-339 26-146 (177)
339 PRK05480 uridine/cytidine kina 94.4 0.038 8.1E-07 58.1 3.9 27 203-229 4-30 (209)
340 TIGR02974 phageshock_pspF psp 94.4 0.14 3.1E-06 57.6 8.7 45 184-228 1-45 (329)
341 PRK08233 hypothetical protein; 94.4 0.033 7E-07 57.0 3.3 26 205-230 3-28 (182)
342 PRK09354 recA recombinase A; P 94.3 0.14 3.1E-06 57.1 8.4 51 190-240 44-95 (349)
343 PF13671 AAA_33: AAA domain; P 94.3 0.037 8.1E-07 54.0 3.6 24 207-230 1-24 (143)
344 PRK11823 DNA repair protein Ra 94.3 0.13 2.8E-06 60.4 8.6 51 190-240 65-115 (446)
345 PRK00625 shikimate kinase; Pro 94.3 0.033 7.2E-07 56.1 3.2 24 207-230 2-25 (173)
346 PRK05022 anaerobic nitric oxid 94.3 0.12 2.7E-06 62.0 8.6 50 180-229 185-234 (509)
347 PRK04040 adenylate kinase; Pro 94.3 0.043 9.3E-07 56.3 4.0 25 206-230 3-27 (188)
348 TIGR00416 sms DNA repair prote 94.3 0.13 2.8E-06 60.5 8.3 53 188-240 77-129 (454)
349 KOG0651 26S proteasome regulat 94.3 0.096 2.1E-06 55.8 6.4 29 205-233 166-194 (388)
350 cd01122 GP4d_helicase GP4d_hel 94.2 0.17 3.7E-06 55.5 9.0 37 204-240 29-66 (271)
351 CHL00206 ycf2 Ycf2; Provisiona 94.2 0.46 1E-05 62.9 13.6 26 204-229 1629-1654(2281)
352 PRK14527 adenylate kinase; Pro 94.2 0.076 1.6E-06 54.8 5.7 26 204-229 5-30 (191)
353 PF00560 LRR_1: Leucine Rich R 94.2 0.017 3.8E-07 35.9 0.5 20 811-830 1-20 (22)
354 cd00267 ABC_ATPase ABC (ATP-bi 94.2 0.08 1.7E-06 52.7 5.6 124 206-338 26-153 (157)
355 PRK06217 hypothetical protein; 94.1 0.16 3.6E-06 51.9 8.0 23 207-229 3-25 (183)
356 TIGR00235 udk uridine kinase. 94.1 0.049 1.1E-06 57.0 4.2 28 203-230 4-31 (207)
357 PRK10416 signal recognition pa 94.1 0.14 2.9E-06 57.2 7.8 29 204-232 113-141 (318)
358 cd01129 PulE-GspE PulE/GspE Th 94.1 0.14 3E-06 55.7 7.7 97 191-302 69-165 (264)
359 PRK14722 flhF flagellar biosyn 94.1 0.2 4.4E-06 56.6 9.2 36 205-240 137-174 (374)
360 KOG2004 Mitochondrial ATP-depe 94.1 0.049 1.1E-06 64.1 4.3 53 182-234 411-467 (906)
361 COG5635 Predicted NTPase (NACH 94.0 0.48 1E-05 60.5 13.5 226 207-437 224-482 (824)
362 cd03229 ABC_Class3 This class 94.0 0.15 3.3E-06 51.8 7.4 34 205-239 26-59 (178)
363 COG0468 RecA RecA/RadA recombi 94.0 0.28 6E-06 53.1 9.5 48 193-240 48-95 (279)
364 PRK14529 adenylate kinase; Pro 94.0 0.14 3E-06 53.7 7.1 91 208-305 3-96 (223)
365 cd03230 ABC_DR_subfamily_A Thi 94.0 0.18 3.9E-06 51.0 7.8 127 205-338 26-168 (173)
366 PRK00131 aroK shikimate kinase 93.9 0.046 9.9E-07 55.5 3.4 25 205-229 4-28 (175)
367 PRK05703 flhF flagellar biosyn 93.9 0.39 8.4E-06 55.9 11.4 36 205-240 221-258 (424)
368 PRK12727 flagellar biosynthesi 93.9 0.59 1.3E-05 54.8 12.5 28 205-232 350-377 (559)
369 TIGR00150 HI0065_YjeE ATPase, 93.9 0.068 1.5E-06 50.9 4.1 25 205-229 22-46 (133)
370 PRK14530 adenylate kinase; Pro 93.9 0.2 4.2E-06 52.9 8.1 23 207-229 5-27 (215)
371 PRK10463 hydrogenase nickel in 93.8 0.063 1.4E-06 58.2 4.4 36 202-237 101-136 (290)
372 COG0465 HflB ATP-dependent Zn 93.8 0.25 5.4E-06 58.7 9.4 156 180-356 148-335 (596)
373 PRK14526 adenylate kinase; Pro 93.8 0.18 3.8E-06 52.7 7.5 22 208-229 3-24 (211)
374 TIGR01360 aden_kin_iso1 adenyl 93.8 0.051 1.1E-06 55.9 3.5 26 204-229 2-27 (188)
375 TIGR03600 phage_DnaB phage rep 93.8 1 2.2E-05 52.9 14.8 74 183-263 173-247 (421)
376 cd01428 ADK Adenylate kinase ( 93.8 0.27 5.8E-06 50.8 8.9 22 208-229 2-23 (194)
377 PRK00889 adenylylsulfate kinas 93.8 0.085 1.8E-06 53.6 5.0 27 205-231 4-30 (175)
378 PRK06547 hypothetical protein; 93.7 0.059 1.3E-06 54.3 3.7 27 203-229 13-39 (172)
379 PF06068 TIP49: TIP49 C-termin 93.7 0.099 2.2E-06 57.7 5.6 59 179-237 21-82 (398)
380 TIGR03499 FlhF flagellar biosy 93.7 0.27 5.8E-06 54.1 9.1 29 204-232 193-221 (282)
381 cd01858 NGP_1 NGP-1. Autoanti 93.7 0.41 8.8E-06 47.6 9.7 23 205-227 102-124 (157)
382 PRK13947 shikimate kinase; Pro 93.7 0.05 1.1E-06 55.0 3.1 26 207-232 3-28 (171)
383 TIGR03878 thermo_KaiC_2 KaiC d 93.7 0.1 2.2E-06 56.6 5.7 38 203-240 34-71 (259)
384 cd03278 ABC_SMC_barmotin Barmo 93.7 0.41 8.9E-06 49.5 9.9 21 207-227 24-44 (197)
385 COG1224 TIP49 DNA helicase TIP 93.6 0.15 3.3E-06 55.3 6.7 57 178-234 35-94 (450)
386 cd03232 ABC_PDR_domain2 The pl 93.6 0.23 5E-06 51.3 7.8 23 205-227 33-55 (192)
387 KOG0739 AAA+-type ATPase [Post 93.6 0.87 1.9E-05 48.3 11.7 49 182-230 133-191 (439)
388 PRK14532 adenylate kinase; Pro 93.5 0.2 4.3E-06 51.6 7.3 22 208-229 3-24 (188)
389 cd00227 CPT Chloramphenicol (C 93.5 0.061 1.3E-06 54.6 3.4 26 206-231 3-28 (175)
390 PRK07132 DNA polymerase III su 93.5 7 0.00015 43.2 19.6 155 205-385 18-185 (299)
391 COG2842 Uncharacterized ATPase 93.5 0.83 1.8E-05 49.0 11.8 121 176-307 66-188 (297)
392 cd02028 UMPK_like Uridine mono 93.5 0.083 1.8E-06 53.8 4.4 26 207-232 1-26 (179)
393 PRK14531 adenylate kinase; Pro 93.5 0.28 6.2E-06 50.1 8.3 23 207-229 4-26 (183)
394 PF03308 ArgK: ArgK protein; 93.4 0.18 4E-06 53.0 6.8 41 192-232 16-56 (266)
395 COG1428 Deoxynucleoside kinase 93.4 0.062 1.3E-06 54.5 3.1 26 205-230 4-29 (216)
396 PRK03846 adenylylsulfate kinas 93.4 0.11 2.4E-06 53.9 5.3 38 203-240 22-59 (198)
397 COG1875 NYN ribonuclease and A 93.4 0.45 9.7E-06 52.2 9.7 25 202-226 242-266 (436)
398 COG2884 FtsE Predicted ATPase 93.4 0.5 1.1E-05 47.0 9.2 52 277-331 147-204 (223)
399 KOG1051 Chaperone HSP104 and r 93.4 0.52 1.1E-05 58.6 11.5 101 183-295 563-670 (898)
400 PF10236 DAP3: Mitochondrial r 93.3 2.2 4.7E-05 47.6 15.6 48 335-382 258-306 (309)
401 cd03115 SRP The signal recogni 93.3 0.16 3.4E-06 51.5 6.1 26 207-232 2-27 (173)
402 PRK10923 glnG nitrogen regulat 93.3 2.4 5.2E-05 50.7 17.2 47 182-228 138-184 (469)
403 PF13306 LRR_5: Leucine rich r 93.2 0.21 4.6E-06 47.5 6.6 84 532-627 3-89 (129)
404 TIGR02858 spore_III_AA stage I 93.2 0.24 5.2E-06 53.7 7.6 117 204-327 110-232 (270)
405 PRK02496 adk adenylate kinase; 93.1 0.22 4.7E-06 51.1 6.9 23 207-229 3-25 (184)
406 cd01123 Rad51_DMC1_radA Rad51_ 93.1 0.2 4.4E-06 53.6 6.9 49 192-240 6-60 (235)
407 PRK11388 DNA-binding transcrip 93.1 1.9 4.1E-05 53.7 16.4 48 181-228 324-371 (638)
408 COG0003 ArsA Predicted ATPase 93.1 0.14 3.1E-06 56.6 5.6 35 205-239 2-36 (322)
409 COG3910 Predicted ATPase [Gene 93.0 0.58 1.3E-05 46.4 8.9 24 204-227 36-59 (233)
410 TIGR02655 circ_KaiC circadian 93.0 0.18 3.9E-06 60.1 6.9 52 189-240 247-298 (484)
411 COG0541 Ffh Signal recognition 93.0 4.8 0.0001 45.7 17.2 28 204-231 99-126 (451)
412 COG0467 RAD55 RecA-superfamily 93.0 0.15 3.3E-06 55.5 5.8 47 194-240 12-58 (260)
413 cd00544 CobU Adenosylcobinamid 92.9 0.38 8.3E-06 48.2 8.0 79 208-294 2-82 (169)
414 cd02024 NRK1 Nicotinamide ribo 92.9 0.071 1.5E-06 54.3 2.7 23 207-229 1-23 (187)
415 TIGR03877 thermo_KaiC_1 KaiC d 92.9 0.19 4.1E-06 53.9 6.1 50 191-240 7-56 (237)
416 PF03205 MobB: Molybdopterin g 92.9 0.16 3.5E-06 49.2 5.0 34 206-239 1-35 (140)
417 PRK13949 shikimate kinase; Pro 92.9 0.08 1.7E-06 53.3 3.1 24 207-230 3-26 (169)
418 KOG1970 Checkpoint RAD17-RFC c 92.8 0.36 7.9E-06 55.6 8.4 41 189-229 89-134 (634)
419 COG0529 CysC Adenylylsulfate k 92.8 0.24 5.2E-06 48.6 6.0 35 203-237 21-55 (197)
420 KOG0738 AAA+-type ATPase [Post 92.8 0.24 5.3E-06 54.4 6.7 74 155-232 189-272 (491)
421 TIGR00390 hslU ATP-dependent p 92.8 0.11 2.4E-06 58.8 4.3 51 183-233 13-75 (441)
422 TIGR02788 VirB11 P-type DNA tr 92.8 0.19 4E-06 56.2 6.1 109 205-325 144-254 (308)
423 cd02025 PanK Pantothenate kina 92.7 0.077 1.7E-06 55.9 2.9 24 207-230 1-24 (220)
424 COG1102 Cmk Cytidylate kinase 92.7 0.091 2E-06 50.7 3.0 24 207-230 2-25 (179)
425 PTZ00494 tuzin-like protein; P 92.7 9.9 0.00022 43.3 18.9 205 134-353 303-543 (664)
426 cd03240 ABC_Rad50 The catalyti 92.7 0.45 9.8E-06 49.6 8.6 60 278-339 132-196 (204)
427 cd02020 CMPK Cytidine monophos 92.7 0.083 1.8E-06 51.8 2.9 23 207-229 1-23 (147)
428 KOG1532 GTPase XAB1, interacts 92.7 0.13 2.9E-06 53.5 4.4 32 204-235 18-49 (366)
429 COG2274 SunT ABC-type bacterio 92.7 0.3 6.4E-06 60.4 8.2 23 205-227 499-521 (709)
430 cd03369 ABCC_NFT1 Domain 2 of 92.7 0.96 2.1E-05 47.3 11.1 24 205-228 34-57 (207)
431 PHA02244 ATPase-like protein 92.7 0.26 5.6E-06 55.1 6.9 48 181-232 95-146 (383)
432 cd00464 SK Shikimate kinase (S 92.7 0.092 2E-06 52.0 3.2 22 208-229 2-23 (154)
433 PRK13948 shikimate kinase; Pro 92.7 0.093 2E-06 53.3 3.2 28 204-231 9-36 (182)
434 PRK11174 cysteine/glutathione 92.7 0.26 5.7E-06 60.8 7.9 25 205-229 376-400 (588)
435 PF07724 AAA_2: AAA domain (Cd 92.7 0.24 5.2E-06 49.9 6.2 40 205-245 3-43 (171)
436 TIGR00708 cobA cob(I)alamin ad 92.7 0.55 1.2E-05 46.8 8.5 34 206-239 6-39 (173)
437 cd03217 ABC_FeS_Assembly ABC-t 92.7 0.39 8.5E-06 49.9 8.1 24 205-228 26-49 (200)
438 PRK05986 cob(I)alamin adenolsy 92.7 0.53 1.2E-05 47.7 8.5 36 205-240 22-57 (191)
439 PF13504 LRR_7: Leucine rich r 92.6 0.059 1.3E-06 31.1 1.0 16 811-826 2-17 (17)
440 PRK08506 replicative DNA helic 92.6 0.78 1.7E-05 54.4 11.3 74 183-263 171-244 (472)
441 cd02021 GntK Gluconate kinase 92.6 0.083 1.8E-06 52.1 2.7 23 207-229 1-23 (150)
442 PF03266 NTPase_1: NTPase; In 92.6 0.13 2.9E-06 51.5 4.2 24 208-231 2-25 (168)
443 cd00071 GMPK Guanosine monopho 92.6 0.077 1.7E-06 51.3 2.4 27 207-233 1-27 (137)
444 PRK05439 pantothenate kinase; 92.6 0.15 3.2E-06 56.2 4.8 30 202-231 83-112 (311)
445 cd02023 UMPK Uridine monophosp 92.6 0.079 1.7E-06 55.1 2.7 23 207-229 1-23 (198)
446 PRK13946 shikimate kinase; Pro 92.5 0.091 2E-06 53.8 3.0 25 206-230 11-35 (184)
447 TIGR02322 phosphon_PhnN phosph 92.5 0.097 2.1E-06 53.4 3.2 25 206-230 2-26 (179)
448 cd01130 VirB11-like_ATPase Typ 92.5 0.14 3.1E-06 52.5 4.5 91 205-304 25-118 (186)
449 COG0703 AroK Shikimate kinase 92.5 0.1 2.2E-06 51.6 3.1 28 206-233 3-30 (172)
450 PLN02674 adenylate kinase 92.4 0.46 9.9E-06 50.6 8.2 24 206-229 32-55 (244)
451 PLN02459 probable adenylate ki 92.3 0.41 9E-06 51.2 7.6 94 207-306 31-129 (261)
452 PRK13657 cyclic beta-1,2-gluca 92.3 0.39 8.5E-06 59.2 8.7 24 205-228 361-384 (588)
453 PF00560 LRR_1: Leucine Rich R 92.3 0.081 1.8E-06 32.9 1.4 19 712-730 2-20 (22)
454 PRK05201 hslU ATP-dependent pr 92.2 0.16 3.4E-06 57.7 4.6 51 183-233 16-78 (443)
455 TIGR03881 KaiC_arch_4 KaiC dom 92.2 0.25 5.5E-06 52.6 6.1 49 192-240 7-55 (229)
456 PRK06904 replicative DNA helic 92.2 3 6.5E-05 49.4 15.5 74 183-263 200-274 (472)
457 COG1419 FlhF Flagellar GTP-bin 92.2 0.64 1.4E-05 52.3 9.3 36 205-240 203-240 (407)
458 PF00625 Guanylate_kin: Guanyl 92.2 0.13 2.8E-06 52.6 3.7 35 205-239 2-36 (183)
459 cd01125 repA Hexameric Replica 92.2 0.87 1.9E-05 48.8 10.2 24 207-230 3-26 (239)
460 cd03213 ABCG_EPDR ABCG transpo 92.1 0.51 1.1E-05 48.8 8.1 25 205-229 35-59 (194)
461 KOG0727 26S proteasome regulat 92.1 0.15 3.2E-06 52.4 3.8 51 183-233 156-217 (408)
462 COG1121 ZnuC ABC-type Mn/Zn tr 92.1 0.35 7.5E-06 51.3 6.7 51 277-329 149-204 (254)
463 COG4618 ArpD ABC-type protease 92.1 0.51 1.1E-05 54.0 8.3 22 206-227 363-384 (580)
464 PRK10751 molybdopterin-guanine 92.1 0.21 4.6E-06 50.0 4.9 29 204-232 5-33 (173)
465 PF13245 AAA_19: Part of AAA d 92.1 0.24 5.3E-06 42.2 4.6 25 205-229 10-35 (76)
466 COG0488 Uup ATPase components 92.1 0.35 7.7E-06 57.6 7.5 57 277-339 163-224 (530)
467 PF00437 T2SE: Type II/IV secr 92.0 0.22 4.8E-06 54.6 5.6 126 182-324 104-232 (270)
468 cd03289 ABCC_CFTR2 The CFTR su 92.0 0.62 1.3E-05 51.0 8.9 32 206-239 31-62 (275)
469 cd01857 HSR1_MMR1 HSR1/MMR1. 92.0 1.2 2.6E-05 43.3 10.1 51 55-107 3-53 (141)
470 PF03796 DnaB_C: DnaB-like hel 92.0 0.71 1.5E-05 50.2 9.4 70 189-265 4-74 (259)
471 PRK12339 2-phosphoglycerate ki 92.0 0.14 3E-06 52.9 3.6 25 205-229 3-27 (197)
472 KOG0735 AAA+-type ATPase [Post 92.0 1.9 4.2E-05 51.3 13.0 151 183-354 668-848 (952)
473 KOG0736 Peroxisome assembly fa 92.0 1.2 2.6E-05 53.5 11.4 92 183-295 673-774 (953)
474 PRK13975 thymidylate kinase; P 92.0 0.14 2.9E-06 53.2 3.6 26 206-231 3-28 (196)
475 COG1936 Predicted nucleotide k 92.0 0.12 2.6E-06 50.7 2.8 20 207-226 2-21 (180)
476 cd03233 ABC_PDR_domain1 The pl 92.0 0.56 1.2E-05 48.8 8.2 26 205-230 33-58 (202)
477 COG1703 ArgK Putative periplas 92.0 0.27 5.8E-06 52.6 5.6 43 192-234 38-80 (323)
478 cd03281 ABC_MSH5_euk MutS5 hom 92.0 0.2 4.3E-06 52.6 4.8 23 205-227 29-51 (213)
479 PF03215 Rad17: Rad17 cell cyc 91.9 0.18 3.8E-06 60.0 4.8 57 181-239 18-77 (519)
480 PF12775 AAA_7: P-loop contain 91.9 0.18 3.8E-06 55.0 4.5 24 206-229 34-57 (272)
481 PRK08840 replicative DNA helic 91.9 3.4 7.4E-05 48.8 15.4 73 184-263 197-270 (464)
482 PRK05057 aroK shikimate kinase 91.9 0.12 2.7E-06 52.2 3.1 25 206-230 5-29 (172)
483 COG2401 ABC-type ATPase fused 91.9 0.4 8.7E-06 53.2 7.0 59 277-335 517-579 (593)
484 PF03029 ATP_bind_1: Conserved 91.9 0.17 3.7E-06 54.0 4.2 24 210-233 1-24 (238)
485 PRK14493 putative bifunctional 91.9 0.2 4.4E-06 54.4 4.8 34 206-240 2-35 (274)
486 PRK13768 GTPase; Provisional 91.8 0.21 4.6E-06 53.9 5.0 33 206-238 3-35 (253)
487 PRK12678 transcription termina 91.8 0.29 6.4E-06 57.3 6.2 89 205-295 416-513 (672)
488 cd01124 KaiC KaiC is a circadi 91.8 0.19 4E-06 51.6 4.4 33 208-240 2-34 (187)
489 PF13086 AAA_11: AAA domain; P 91.8 0.31 6.7E-06 51.9 6.3 36 190-229 6-41 (236)
490 PRK08006 replicative DNA helic 91.8 3.2 6.8E-05 49.2 15.0 72 184-262 204-276 (471)
491 COG0396 sufC Cysteine desulfur 91.8 0.65 1.4E-05 47.8 7.8 60 277-336 154-216 (251)
492 PRK06731 flhF flagellar biosyn 91.7 3.7 8.1E-05 44.5 14.3 36 205-240 75-110 (270)
493 TIGR00176 mobB molybdopterin-g 91.7 0.19 4.1E-06 49.7 4.1 26 207-232 1-26 (155)
494 PRK06067 flagellar accessory p 91.7 0.29 6.3E-06 52.4 5.8 50 191-240 11-60 (234)
495 COG3640 CooC CO dehydrogenase 91.6 0.25 5.5E-06 50.8 4.9 35 207-241 2-36 (255)
496 PRK15453 phosphoribulokinase; 91.6 0.26 5.6E-06 53.0 5.1 28 204-231 4-31 (290)
497 TIGR01069 mutS2 MutS2 family p 91.6 0.2 4.4E-06 62.7 5.1 25 204-228 321-345 (771)
498 TIGR02238 recomb_DMC1 meiotic 91.6 0.85 1.9E-05 50.7 9.5 50 191-240 82-137 (313)
499 cd01983 Fer4_NifH The Fer4_Nif 91.6 0.21 4.5E-06 44.6 3.9 25 207-231 1-25 (99)
500 PRK09280 F0F1 ATP synthase sub 91.5 0.63 1.4E-05 54.0 8.6 89 205-295 144-248 (463)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.1e-144 Score=1399.32 Aligned_cols=1027 Identities=37% Similarity=0.604 Sum_probs=876.1
Q ss_pred CCCCC---CCCcccEEEcCccccccCchHHHHHHHHHhCCCeEEeeCccccCCCcchHHHHHHHhhcceEEEEecCCccC
Q 044579 1 MVSSS---SQSKYEVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELKKGDEISPALSNAIESSDISIIIFSKGYAS 77 (1103)
Q Consensus 1 ~~s~~---~~~~~dvfis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~ 77 (1103)
||||| +.|+||||+||||+|+|++|++||+++|.++||.+|+|+ ++++|+.|.+++.+||++|+++|||||++||+
T Consensus 1 ~~~~~~~~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~-~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~ 79 (1153)
T PLN03210 1 MASSSSSSRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDN-EIERSQSLDPELKQAIRDSRIAVVVFSKNYAS 79 (1153)
T ss_pred CCCCCCCCCCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccC-CccCCCcccHHHHHHHHhCeEEEEEecCCccc
Confidence 66653 469999999999999999999999999999999999998 79999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHhhhcCCcEEEEEEeeeCCcccccccCchhhhhhhcccCCc-hhHHHHHHHHHHhccCCCccCCCCcc
Q 044579 78 SRWCLNELVKILDCKKMNAQIVIPVFYQVDPSDVRKQRGSFGEAFVNHDNNFP-GKVQKWRHALTEASNLSGYDSTESRN 156 (1103)
Q Consensus 78 s~wc~~El~~~~~~~~~~~~~v~pif~~v~p~~vr~~~g~~~~~~~~~~~~~~-~~~~~w~~al~~~~~~~g~~~~~~~~ 156 (1103)
|+||++||++|++|+++.+++|+||||+|||+|||+|+|+||++|++++++.. +++++||+||++||+++||++..+++
T Consensus 80 s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~~~ 159 (1153)
T PLN03210 80 SSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHSQNWPN 159 (1153)
T ss_pred chHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhCcCceecCCCCC
Confidence 99999999999999999999999999999999999999999999999988755 89999999999999999999998999
Q ss_pred hHHHHHHHHHHHHHhcccCCCCCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCce
Q 044579 157 DAELVEKIVEDISKKLEDMSESTDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGK 236 (1103)
Q Consensus 157 e~~~i~~iv~~i~~~l~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~ 236 (1103)
|+++|++||++|++++.. .++.+.+++|||+++++++..++..+.+++++|+||||||+||||||+++|+++..+|++.
T Consensus 160 E~~~i~~Iv~~v~~~l~~-~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~ 238 (1153)
T PLN03210 160 EAKMIEEIANDVLGKLNL-TPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSS 238 (1153)
T ss_pred HHHHHHHHHHHHHHhhcc-ccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeE
Confidence 999999999999999988 6777889999999999999999988888899999999999999999999999999999999
Q ss_pred EEEEec--hhh---hcc------cChHHHHHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCCCHhHHHHHh
Q 044579 237 CFMANV--REK---ANK------MGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVNDEFTQLESLA 305 (1103)
Q Consensus 237 ~~~~~~--~~~---~~~------~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~~l~~l~ 305 (1103)
+|+... +.. ... .....++++++.++....... ......++++++++|+|||||||| +..+++.+.
T Consensus 239 vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~--~~~~~~~~~~L~~krvLLVLDdv~-~~~~l~~L~ 315 (1153)
T PLN03210 239 VFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIK--IYHLGAMEERLKHRKVLIFIDDLD-DQDVLDALA 315 (1153)
T ss_pred EEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcc--cCCHHHHHHHHhCCeEEEEEeCCC-CHHHHHHHH
Confidence 998642 111 110 112345666777665433211 111236788899999999999999 889999999
Q ss_pred CCCCccCCCcEEEEEeCchhhHhhcCcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhHHHHH
Q 044579 306 GGVDRFSPGSRIVITTRDKQVLDKCGVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLALEVL 385 (1103)
Q Consensus 306 ~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l 385 (1103)
....|+++||+||||||+++++..++++++|+|+.|++++|++||+++||++..+.+++.+++++|+++|+|+||||+++
T Consensus 316 ~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vl 395 (1153)
T PLN03210 316 GQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVL 395 (1153)
T ss_pred hhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 88889999999999999999998888889999999999999999999999988777889999999999999999999999
Q ss_pred HhhcCCCCHHHHHHHHHHhhhcCCcchhhHHHhhhcCCCH-HHHHHHhhhhccCCCCCHHHHHHHhcC-----CCchHHH
Q 044579 386 GSSLYQKSKQQWKVKLQNLKLISEPNIYNVLKISYDDLNP-EEKKIFLDIACFFKGEDADFVTRIQDD-----PTSLDNI 459 (1103)
Q Consensus 386 g~~L~~~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~-~~k~~fl~~a~f~~~~~~~~~~~~~~~-----~~~l~~L 459 (1103)
|++|++++..+|+.++++++...+.+|.++|++||++|++ .+|.+|+++||||.+++.+.+..+++. ..+++.|
T Consensus 396 gs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L 475 (1153)
T PLN03210 396 GSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNL 475 (1153)
T ss_pred HHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHH
Confidence 9999999999999999999988888999999999999976 599999999999999999998887765 5679999
Q ss_pred hhccCeeEcCCCeEEechhHHHHHHHhhhccc--cCcceeecchhhHHHHhcccccccccccccccCCCCcceeechHhh
Q 044579 460 VDKSLITISDENRLQMHDLLQEMGQTIVRQKS--ISKRTRLWDHEDIYHVLKKNKGTEKIEGIFLDLSKTKDIHLSSQAF 537 (1103)
Q Consensus 460 ~~~sLi~~~~~~~~~mHdlv~~~~~~i~~~e~--~~~~~rl~~~~~i~~vl~~~~~~~~v~~i~L~l~~~~~~~~~~~~f 537 (1103)
++++||++. .+++.|||++|+||++++++++ |++|+++|+++|+++++.+++|++++++|++|++......+...+|
T Consensus 476 ~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF 554 (1153)
T PLN03210 476 VDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAF 554 (1153)
T ss_pred HhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHH
Confidence 999999987 6889999999999999999886 8999999999999999999999999999999999988899999999
Q ss_pred hcCcccceEEEecCCCCCccccCcceecCCCcccCCCceEEEEEcCCCCCCCCCcccccccccccccccccccccccccc
Q 044579 538 ANMSNLRLLKFYMPERGGVPIMSSKVHLDQGLEDLPEKLRYLHWHGYPLKTLPFDFELENLIELRLPYSKVEQIWEGKKE 617 (1103)
Q Consensus 538 ~~l~~Lr~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~ 617 (1103)
.+|++|++|+++.+.... ......++|+++..+|.+||+|+|.+|+++.+|..+.+.+|++|+|++|+++.+|.++..
T Consensus 555 ~~m~~L~~L~~~~~~~~~--~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~ 632 (1153)
T PLN03210 555 KGMRNLLFLKFYTKKWDQ--KKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHS 632 (1153)
T ss_pred hcCccccEEEEecccccc--cccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcccccccccccc
Confidence 999999999998765321 112456789999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEecCCCCCCCccCCCCCCCCCccEEEecCCCCCCcccccccCCCcccEEEccCCCCCcccCCCCCCCCCcEEEcc
Q 044579 618 ASKLKSIDLCHSQHLIRMPDLSEIPNLERTNFFNCTNLVLVPSSIQNFNNLSMLCFRGCESLRSFPRDIHFVSPVTIDFS 697 (1103)
Q Consensus 618 l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~ 697 (1103)
+++|+.|+|++|..+..+|+++.+++|+.|+|++|..+..+|.+++++++|+.|++++|+.++.+|..+++++|+.|+++
T Consensus 633 l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Ls 712 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLS 712 (1153)
T ss_pred CCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCC
Confidence 99999999999998999999999999999999999999999999999999999999999999999999899999999999
Q ss_pred CCcCCCcCCCcCCCccEEecCCccceecCcccc------------------------------CCCCCCEEecCCCcccc
Q 044579 698 FCVNLTEFPKISGKITELNLCDTAIEEVPSSVE------------------------------CLTNLKELYLSRCSTLN 747 (1103)
Q Consensus 698 ~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~------------------------------~l~~L~~L~L~~~~~~~ 747 (1103)
+|..+..+|....+|+.|++++|.+..+|..+. .+++|+.|+|++|....
T Consensus 713 gc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~ 792 (1153)
T PLN03210 713 GCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLV 792 (1153)
T ss_pred CCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCcc
Confidence 999999999999999999999999999886431 12478888899888888
Q ss_pred cccccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCccccCc
Q 044579 748 RLSTSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESLPS 827 (1103)
Q Consensus 748 ~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~lp~ 827 (1103)
.+|.+++++++|+.|+|++|..+.. +|..+ ++++|+.|+|++|..+..+|.. .++|+.|+|++|.++.+|.
T Consensus 793 ~lP~si~~L~~L~~L~Ls~C~~L~~---LP~~~-~L~sL~~L~Ls~c~~L~~~p~~-----~~nL~~L~Ls~n~i~~iP~ 863 (1153)
T PLN03210 793 ELPSSIQNLHKLEHLEIENCINLET---LPTGI-NLESLESLDLSGCSRLRTFPDI-----STNISDLNLSRTGIEEVPW 863 (1153)
T ss_pred ccChhhhCCCCCCEEECCCCCCcCe---eCCCC-CccccCEEECCCCCcccccccc-----ccccCEeECCCCCCccChH
Confidence 9999999999999999999977665 77766 7899999999999988777532 4789999999999999999
Q ss_pred cccCCCCCCEEeccCCcCCcccCcccc---ccccceecccccccccC--CCCchhhhhhhcccCCCCCCCCCccchhccc
Q 044579 828 SIKQLSQLRKLDLSNCNMLLSLPELPL---FLEDLEARNCKRLQFLP--EIPSCLEELDASMLEKPPKTSHVDEFWTEEM 902 (1103)
Q Consensus 828 ~i~~l~~L~~L~L~~n~~l~~lp~~~~---~L~~L~~~~c~~l~~~~--~~p~~l~~L~~~~~~~~~~~~~~~~~~~~~~ 902 (1103)
++..+++|+.|+|++|+.+..+|..+. +|+.|.+.+|.++...+ ..|.....+. .+.. ..++
T Consensus 864 si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~-----~n~~-~~~p------- 930 (1153)
T PLN03210 864 WIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMAT-----DNIH-SKLP------- 930 (1153)
T ss_pred HHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhhc-----cccc-ccCC-------
Confidence 999999999999999999999987654 45556777888876432 2222211111 1100 0111
Q ss_pred ccceeeecccccccHHHHHHHhhhhHHHHHHHHHhhhcccCcceEEEeccCCCCCCCCcccCCCceEE-EECCCCCC-CC
Q 044579 903 LSIKFKFTNCLKLNEKAYNKILADSKLTIQRMAIASLRLFDEKELSIFVPGSEIPDWFSNQSSGSSIT-LQLPQHSF-GN 980 (1103)
Q Consensus 903 ~~~~~~~~~C~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~iP~wf~~~~~g~sv~-~~lp~~~~-~~ 980 (1103)
....+.|.||++|++.+. +. . ......+++||.++|+||+||+.|++++ |.+|+.|+ ..
T Consensus 931 ~~~~l~f~nC~~L~~~a~--l~-----------~------~~~~~~~~l~g~evp~~f~hr~~g~sl~~i~l~~~~~~~~ 991 (1153)
T PLN03210 931 STVCINFINCFNLDQEAL--LQ-----------Q------QSIFKQLILSGEEVPSYFTHRTTGASLTNIPLLHISPCQP 991 (1153)
T ss_pred chhccccccccCCCchhh--hc-----------c------cccceEEECCCccCchhccCCcccceeeeeccCCcccCCC
Confidence 123457999999986542 11 0 1223467899999999999999999998 99999998 68
Q ss_pred ceeeEEEEEEeeccCCCCCCcceeeEEEEeeeecccceeeEEecCCccccCCCcEEEEEecCCC------------CCCC
Q 044579 981 LIGFALCAVIEFKQLSSNSWSYFNVGCRYSYEINKISAKDVYLAGIVDFIDSDHVILGFKPCGN------------DELL 1048 (1103)
Q Consensus 981 ~~g~~~c~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~dh~~~~~~~~~~------------~~~~ 1048 (1103)
|.||++|+|+++...... ...+.+.|.|.+....++... ....+|+|+.|..... +...
T Consensus 992 ~~~f~~c~v~~~~~~~~~-~~~~~~~~~c~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 1062 (1153)
T PLN03210 992 FFRFRACAVVDSESFFII-SVSFDIQVCCRFIDRLGNHFD--------SPYQPHVFSVTKKGSHLVIFDCCFPLNEDNAP 1062 (1153)
T ss_pred ccceEEEEEEecCccccC-CCceeEEEEEEEECCCCCccc--------cCCCceeEeeeccccceEEecccccccccccc
Confidence 999999999987765322 235677888877654333211 1234444444433211 0000
Q ss_pred CCCCCcceEEEEEEeccCCCceEEEEeeceEeecCCc
Q 044579 1049 PDANYHTDVSFQFFPDGYGSSYKVKCCGVCPVYADSK 1085 (1103)
Q Consensus 1049 ~~~~~~~~~~~~f~~~~~~~~~~vk~cG~~lvy~~~~ 1085 (1103)
.....++|++++|........++||+|||+++|+.+.
T Consensus 1063 ~~~~~~~~~~~~f~~~~~~~~~~~~~cg~~~~~~~~~ 1099 (1153)
T PLN03210 1063 LAELNYDHVDIQFRLTNKNSQLKLKGCGIRLSEDDSS 1099 (1153)
T ss_pred hhccCCceeeEEEEEecCCCCeEEEeeeEEEeccCCC
Confidence 1122467777777654444458999999999996654
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=9.7e-55 Score=531.21 Aligned_cols=574 Identities=24% Similarity=0.337 Sum_probs=399.4
Q ss_pred cccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHH---HhccCCceEEEEechhhhcccChHHHHHHHHHh
Q 044579 185 VGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQ---ISRHFQGKCFMANVREKANKMGVIHVRDEVISQ 261 (1103)
Q Consensus 185 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~---~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 261 (1103)
||.+..++++...|..++. ++++|+||||+||||||+.++++ +..+|+.++|+. +++.+....++.+++..
T Consensus 161 VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~----VSk~f~~~~iq~~Il~~ 234 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV----VSKEFTTRKIQQTILER 234 (889)
T ss_pred ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE----EcccccHHhHHHHHHHH
Confidence 9999999999999875443 89999999999999999999983 679999999998 67889999999999998
Q ss_pred hhCCCCccccc--cchH-HHHHhhcCCceEEEEeCCCCCHhHHHHHhCCCCccCCCcEEEEEeCchhhHhh-cCcceEEE
Q 044579 262 VLGENLKIGTL--IVPQ-NIKKRLQRVKVLIVLDDVNDEFTQLESLAGGVDRFSPGSRIVITTRDKQVLDK-CGVSYIYK 337 (1103)
Q Consensus 262 l~~~~~~~~~~--~~~~-~l~~~L~~k~~LlVLDdv~~~~~~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~-~~~~~~~~ 337 (1103)
+...+...... +..+ .+.+.|.++|++||||||| +...|+.+..+++....||+|++|||++.|+.. +++...++
T Consensus 235 l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW-~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~ 313 (889)
T KOG4658|consen 235 LGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIW-EEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIE 313 (889)
T ss_pred hccCCcccchhhHHHHHHHHHHHhccCceEEEEeccc-ccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCcccc
Confidence 76544332221 2333 8999999999999999999 777799999999888889999999999999988 78889999
Q ss_pred ccCCChhHHHHHHHHhhhccC-CCChhHHHHHHHHHHHhCCChhHHHHHHhhcCCC-CHHHHHHHHHHhhhc-------C
Q 044579 338 VKRLEHDNALELFCRKAIRQN-SRSQDLLELSKEIVGYAKGNPLALEVLGSSLYQK-SKQQWKVKLQNLKLI-------S 408 (1103)
Q Consensus 338 l~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~i~~~~~G~PLal~~lg~~L~~~-~~~~w~~~l~~l~~~-------~ 408 (1103)
++.|+.+|||.||++.||... ...+..+++|++++++|+|+|||+.++|+.|+.+ +..+|+.+...+... .
T Consensus 314 v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~ 393 (889)
T KOG4658|consen 314 VECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGM 393 (889)
T ss_pred ccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCch
Confidence 999999999999999998763 3335589999999999999999999999999884 677999999988654 1
Q ss_pred CcchhhHHHhhhcCCCHHHHHHHhhhhccCCCCCHHH--HHHHhcC-----------------CCchHHHhhccCeeEcC
Q 044579 409 EPNIYNVLKISYDDLNPEEKKIFLDIACFFKGEDADF--VTRIQDD-----------------PTSLDNIVDKSLITISD 469 (1103)
Q Consensus 409 ~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~~~~~--~~~~~~~-----------------~~~l~~L~~~sLi~~~~ 469 (1103)
.+.+..+++.|||.|+++.|.||+|||.||+++.++. +...|.+ ..++.+|++++|+...+
T Consensus 394 ~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~ 473 (889)
T KOG4658|consen 394 EESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEER 473 (889)
T ss_pred hhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcc
Confidence 3468899999999999999999999999999987643 3333322 56799999999998874
Q ss_pred C----CeEEechhHHHHHHHhhhccccCcceeecchh-hHHHHhcccccccccccccccCCCCcceeechHhhhcCcccc
Q 044579 470 E----NRLQMHDLLQEMGQTIVRQKSISKRTRLWDHE-DIYHVLKKNKGTEKIEGIFLDLSKTKDIHLSSQAFANMSNLR 544 (1103)
Q Consensus 470 ~----~~~~mHdlv~~~~~~i~~~e~~~~~~rl~~~~-~i~~vl~~~~~~~~v~~i~L~l~~~~~~~~~~~~f~~l~~Lr 544 (1103)
. .++.|||++||||..++++....+...+.... ...+ ..+......++.+.+.... ...+.. . ...++|+
T Consensus 474 ~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~-~~~~~~~~~~rr~s~~~~~--~~~~~~-~-~~~~~L~ 548 (889)
T KOG4658|consen 474 DEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSE-IPQVKSWNSVRRMSLMNNK--IEHIAG-S-SENPKLR 548 (889)
T ss_pred cccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccc-cccccchhheeEEEEeccc--hhhccC-C-CCCCccc
Confidence 2 67999999999999999854311111111110 0000 0111112233433332211 111111 1 2334688
Q ss_pred eEEEecCCCCCccccCcceecCCC-cccCCCceEEEEEcCCC-CCCCCCcc-ccccccccccccccccccccccccCCcc
Q 044579 545 LLKFYMPERGGVPIMSSKVHLDQG-LEDLPEKLRYLHWHGYP-LKTLPFDF-ELENLIELRLPYSKVEQIWEGKKEASKL 621 (1103)
Q Consensus 545 ~L~l~~n~~~~~~~~~~~~~l~~~-l~~l~~~Lr~L~l~~~~-l~~lp~~~-~l~~L~~L~L~~n~i~~l~~~~~~l~~L 621 (1103)
+|-+..|.. ....++.+ +..+| .||+|++++|. +..+|..+ .+-+|++|+|+++.++.+|.++++|.+|
T Consensus 549 tLll~~n~~-------~l~~is~~ff~~m~-~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L 620 (889)
T KOG4658|consen 549 TLLLQRNSD-------WLLEISGEFFRSLP-LLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKL 620 (889)
T ss_pred eEEEeecch-------hhhhcCHHHHhhCc-ceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhh
Confidence 888877631 12344444 33455 89999998664 78888888 6889999999999999999999999999
Q ss_pred eEecCCCCCCCccCCCCCC-CCCccEEEecCCC-C-CCcccccccCCCcccEEEccCCCCCcccCCCCCCCCCcEEEccC
Q 044579 622 KSIDLCHSQHLIRMPDLSE-IPNLERTNFFNCT-N-LVLVPSSIQNFNNLSMLCFRGCESLRSFPRDIHFVSPVTIDFSF 698 (1103)
Q Consensus 622 ~~L~L~~~~~~~~~p~l~~-l~~L~~L~L~~~~-~-l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~ 698 (1103)
.+||+..+..+..+|.+.. +++|++|.+..-. . ....-..+.+|.+|+.|....+.. ..+-....+..
T Consensus 621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~-------- 691 (889)
T KOG4658|consen 621 IYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTR-------- 691 (889)
T ss_pred heeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhhhhhhHH--------
Confidence 9999988877777776444 8888888887633 0 011112233444444443322111 00000001111
Q ss_pred CcCCCcCCCcCCCccEEecCCccceecCccccCCCCCCEEecCCCccccccccccc-----C-CCCCcEEeecCCCCCCc
Q 044579 699 CVNLTEFPKISGKITELNLCDTAIEEVPSSVECLTNLKELYLSRCSTLNRLSTSIC-----K-LKSLHELILSDCLSLET 772 (1103)
Q Consensus 699 c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~-----~-l~~L~~L~L~~~~~l~~ 772 (1103)
.....+.+.+.++.....+.++..+.+|+.|.+.+|........... . +++|..+.+.+|.....
T Consensus 692 ---------L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~ 762 (889)
T KOG4658|consen 692 ---------LRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRD 762 (889)
T ss_pred ---------HHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccc
Confidence 11112233333344456666777788888888888876543222111 1 33444444555543333
Q ss_pred cccCCccccCCCCCCeeeccCCCCCCCC
Q 044579 773 ITELPSSFANLEGLEKLVLVGCSKLNKL 800 (1103)
Q Consensus 773 i~~lp~~~~~l~~L~~L~L~~~~~~~~l 800 (1103)
+....-.++|+.|.+..|.....+
T Consensus 763 ----l~~~~f~~~L~~l~l~~~~~~e~~ 786 (889)
T KOG4658|consen 763 ----LTWLLFAPHLTSLSLVSCRLLEDI 786 (889)
T ss_pred ----cchhhccCcccEEEEecccccccC
Confidence 233334567777777777766554
No 3
>PLN03194 putative disease resistance protein; Provisional
Probab=100.00 E-value=3.1e-42 Score=332.03 Aligned_cols=159 Identities=31% Similarity=0.521 Sum_probs=146.6
Q ss_pred CCCCCCCcccEEEcCccccccCchHHHHHHHHHhCCCeEEeeCccccCCCcchHHHHHHHhhcceEEEEecCCccCchhh
Q 044579 2 VSSSSQSKYEVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELKKGDEISPALSNAIESSDISIIIFSKGYASSRWC 81 (1103)
Q Consensus 2 ~s~~~~~~~dvfis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~wc 81 (1103)
.||++..+|||||||||+|+|++|++||+++|+++||+||+|++++++|+.|.++|.+||++|+++|||||++|++|.||
T Consensus 19 ~~~~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WC 98 (187)
T PLN03194 19 SSSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFC 98 (187)
T ss_pred cCCCCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhH
Confidence 36777899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCcEEEEEEeeeCCcccccc-cCchhhhhhhcccCCchhHHHHHHHHHHhccCCCccCCC-CcchHH
Q 044579 82 LNELVKILDCKKMNAQIVIPVFYQVDPSDVRKQ-RGSFGEAFVNHDNNFPGKVQKWRHALTEASNLSGYDSTE-SRNDAE 159 (1103)
Q Consensus 82 ~~El~~~~~~~~~~~~~v~pif~~v~p~~vr~~-~g~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~-~~~e~~ 159 (1103)
++||++|++|+ +.|+||||+|+|+|||+| .|.+ ..+++++||.||++||+++||++.. .++|++
T Consensus 99 LdEL~~I~e~~----~~ViPIFY~VdPsdVr~q~~~~~----------~~e~v~~Wr~AL~~va~l~G~~~~~~~~~e~e 164 (187)
T PLN03194 99 LHELALIMESK----KRVIPIFCDVKPSQLRVVDNGTC----------PDEEIRRFNWALEEAKYTVGLTFDSLKGNWSE 164 (187)
T ss_pred HHHHHHHHHcC----CEEEEEEecCCHHHhhccccCCC----------CHHHHHHHHHHHHHHhccccccCCCCCCCHHH
Confidence 99999999974 479999999999999997 4431 2379999999999999999997764 578999
Q ss_pred HHHHHHHHHHHhccc
Q 044579 160 LVEKIVEDISKKLED 174 (1103)
Q Consensus 160 ~i~~iv~~i~~~l~~ 174 (1103)
+|++||+.|.++|..
T Consensus 165 ~i~~iv~~v~k~l~~ 179 (187)
T PLN03194 165 VVTMASDAVIKNLIE 179 (187)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999866
No 4
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=5.2e-34 Score=317.44 Aligned_cols=261 Identities=31% Similarity=0.501 Sum_probs=202.0
Q ss_pred cchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHH--HhccCCceEEEEechhhhcccChHHHHHHHHHhhhC
Q 044579 187 LNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQ--ISRHFQGKCFMANVREKANKMGVIHVRDEVISQVLG 264 (1103)
Q Consensus 187 r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~--~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 264 (1103)
||.++++|.+.|....++.++|+|+||||+||||||++++++ ++.+|+.++|+.. ........+...++.++..
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~----~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSL----SKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEE----ES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccccccccc----ccccccccccccccccccc
Confidence 788999999999876688999999999999999999999987 8899999999873 3444557788888888776
Q ss_pred CCCcc---ccccch-HHHHHhhcCCceEEEEeCCCCCHhHHHHHhCCCCccCCCcEEEEEeCchhhHhhcCc-ceEEEcc
Q 044579 265 ENLKI---GTLIVP-QNIKKRLQRVKVLIVLDDVNDEFTQLESLAGGVDRFSPGSRIVITTRDKQVLDKCGV-SYIYKVK 339 (1103)
Q Consensus 265 ~~~~~---~~~~~~-~~l~~~L~~k~~LlVLDdv~~~~~~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~-~~~~~l~ 339 (1103)
..... .+.... ..+.+.|+++++|||||||| +...|+.+...++.+..|++||||||+..++..... ...++++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~-~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~ 155 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVW-DEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELE 155 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE--SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECS
T ss_pred cccccccccccccccccchhhhccccceeeeeeec-cccccccccccccccccccccccccccccccccccccccccccc
Confidence 53322 222222 38889999999999999999 888888888777777789999999999988766554 6799999
Q ss_pred CCChhHHHHHHHHhhhccC-CCChhHHHHHHHHHHHhCCChhHHHHHHhhcCC-CCHHHHHHHHHHhhhcC------Ccc
Q 044579 340 RLEHDNALELFCRKAIRQN-SRSQDLLELSKEIVGYAKGNPLALEVLGSSLYQ-KSKQQWKVKLQNLKLIS------EPN 411 (1103)
Q Consensus 340 ~L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~i~~~~~G~PLal~~lg~~L~~-~~~~~w~~~l~~l~~~~------~~~ 411 (1103)
+|+.+||++||.+.++... .......+.+++|++.|+|+||||+++|++|+. .+..+|...++.+.... ...
T Consensus 156 ~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~ 235 (287)
T PF00931_consen 156 PLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRS 235 (287)
T ss_dssp S--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999997665 333445678999999999999999999999954 26678999888766432 356
Q ss_pred hhhHHHhhhcCCCHHHHHHHhhhhccCCCCC--HHHHHHHhcC
Q 044579 412 IYNVLKISYDDLNPEEKKIFLDIACFFKGED--ADFVTRIQDD 452 (1103)
Q Consensus 412 i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~~--~~~~~~~~~~ 452 (1103)
+..++..||+.|+++.|+||+++|+||.+.. .+.+..+|..
T Consensus 236 ~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~ 278 (287)
T PF00931_consen 236 VFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVA 278 (287)
T ss_dssp HHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT
T ss_pred ccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHH
Confidence 8999999999999999999999999999876 5666666654
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=4.1e-30 Score=334.44 Aligned_cols=381 Identities=18% Similarity=0.181 Sum_probs=240.7
Q ss_pred ccccccCCCCcceeechHhhhcCcccceEEEecCCCCCccccCcceecCCCcccCCCceEEEEEcCCCCCCCCCcccccc
Q 044579 518 EGIFLDLSKTKDIHLSSQAFANMSNLRLLKFYMPERGGVPIMSSKVHLDQGLEDLPEKLRYLHWHGYPLKTLPFDFELEN 597 (1103)
Q Consensus 518 ~~i~L~l~~~~~~~~~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~ 597 (1103)
+...+|++.+......+.+|.++++|++|++++|.+. ..+|.++.....+|++|++++|.+....+...+++
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~--------~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~ 141 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS--------GPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPN 141 (968)
T ss_pred cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccC--------CcCChHHhccCCCCCEEECcCCccccccCccccCC
Confidence 3445677776655556778889999999999888653 13455554333478888888887764333345677
Q ss_pred cccccccccccc-ccccccccCCcceEecCCCCCCCccCCC-CCCCCCccEEEecCCCCCCcccccccCCCcccEEEccC
Q 044579 598 LIELRLPYSKVE-QIWEGKKEASKLKSIDLCHSQHLIRMPD-LSEIPNLERTNFFNCTNLVLVPSSIQNFNNLSMLCFRG 675 (1103)
Q Consensus 598 L~~L~L~~n~i~-~l~~~~~~l~~L~~L~L~~~~~~~~~p~-l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~ 675 (1103)
|++|+|++|.+. .+|..+.++++|++|+|++|.+...+|. ++++++|++|++++|.....+|..++++++|+.|+|++
T Consensus 142 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 221 (968)
T PLN00113 142 LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGY 221 (968)
T ss_pred CCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcC
Confidence 888888887776 5667777778888888887776666664 77777788888877777667777777777777777777
Q ss_pred CCCCcccCCCC-CCCCCcEEEccCCcCCCcCCCc---CCCccEEecCCccce-ecCccccCCCCCCEEecCCCccccccc
Q 044579 676 CESLRSFPRDI-HFVSPVTIDFSFCVNLTEFPKI---SGKITELNLCDTAIE-EVPSSVECLTNLKELYLSRCSTLNRLS 750 (1103)
Q Consensus 676 ~~~l~~lp~~~-~l~~L~~L~l~~c~~l~~~~~~---~~~L~~L~L~~~~i~-~lp~~~~~l~~L~~L~L~~~~~~~~lp 750 (1103)
|.....+|..+ .+++|++|++++|.....+|.. +.+|++|++++|.+. .+|.++.++++|+.|+|++|.+.+.+|
T Consensus 222 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p 301 (968)
T PLN00113 222 NNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP 301 (968)
T ss_pred CccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCC
Confidence 76666666665 6777777777777655555543 345667777777665 466667777777777777777666677
Q ss_pred ccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCcc-------
Q 044579 751 TSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFE------- 823 (1103)
Q Consensus 751 ~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~------- 823 (1103)
..+.++++|+.|++++|..... +|..+..+++|+.|+|++|.+.+.+| ..+..+++|+.|+|++|+++
T Consensus 302 ~~~~~l~~L~~L~l~~n~~~~~---~~~~~~~l~~L~~L~L~~n~l~~~~p--~~l~~~~~L~~L~Ls~n~l~~~~p~~~ 376 (968)
T PLN00113 302 ELVIQLQNLEILHLFSNNFTGK---IPVALTSLPRLQVLQLWSNKFSGEIP--KNLGKHNNLTVLDLSTNNLTGEIPEGL 376 (968)
T ss_pred hhHcCCCCCcEEECCCCccCCc---CChhHhcCCCCCEEECcCCCCcCcCC--hHHhCCCCCcEEECCCCeeEeeCChhH
Confidence 6677777777777776644333 55556666666666666666555553 23344555555555555544
Q ss_pred ------------------ccCccccCCCCCCEEeccCCcCCcccCccccccccceecccccccccCCCCc---hhhhhhh
Q 044579 824 ------------------SLPSSIKQLSQLRKLDLSNCNMLLSLPELPLFLEDLEARNCKRLQFLPEIPS---CLEELDA 882 (1103)
Q Consensus 824 ------------------~lp~~i~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~~~~c~~l~~~~~~p~---~l~~L~~ 882 (1103)
.+|..+..+++|+.|+|++|++.+.+|..+..++.|..+++++|.+.+.+|. .+.+|..
T Consensus 377 ~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 456 (968)
T PLN00113 377 CSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQM 456 (968)
T ss_pred hCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcE
Confidence 3444445555555555555555555555555555555555555555555543 2334444
Q ss_pred cccCCCCCCCCCccchhcccccceeeeccc
Q 044579 883 SMLEKPPKTSHVDEFWTEEMLSIKFKFTNC 912 (1103)
Q Consensus 883 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C 912 (1103)
+.+++|......+..+.. .....+++++|
T Consensus 457 L~L~~n~~~~~~p~~~~~-~~L~~L~ls~n 485 (968)
T PLN00113 457 LSLARNKFFGGLPDSFGS-KRLENLDLSRN 485 (968)
T ss_pred EECcCceeeeecCccccc-ccceEEECcCC
Confidence 445555444333332222 12344556655
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=2.8e-28 Score=317.32 Aligned_cols=333 Identities=22% Similarity=0.249 Sum_probs=206.5
Q ss_pred ceEEEEEcCCCCC-CCCCcc-cccccccccccccccc-ccccccccCCcceEecCCCCCCCccCCC-CCCCCCccEEEec
Q 044579 575 KLRYLHWHGYPLK-TLPFDF-ELENLIELRLPYSKVE-QIWEGKKEASKLKSIDLCHSQHLIRMPD-LSEIPNLERTNFF 650 (1103)
Q Consensus 575 ~Lr~L~l~~~~l~-~lp~~~-~l~~L~~L~L~~n~i~-~l~~~~~~l~~L~~L~L~~~~~~~~~p~-l~~l~~L~~L~L~ 650 (1103)
+|++|++++|.+. .+|..+ .+++|++|+|++|++. .+|..+.++++|++|+|++|.+...+|. +.++++|+.|+++
T Consensus 237 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~ 316 (968)
T PLN00113 237 SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLF 316 (968)
T ss_pred CCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECC
Confidence 4555555555443 334333 4455555555555543 3444445555555555555554444443 4455555555555
Q ss_pred CCCCCCcccccccCCCcccEEEccCCCCCcccCCCC-CCCCCcEEEccCCcCCCcCCCc---CCCccEEecCCccce-ec
Q 044579 651 NCTNLVLVPSSIQNFNNLSMLCFRGCESLRSFPRDI-HFVSPVTIDFSFCVNLTEFPKI---SGKITELNLCDTAIE-EV 725 (1103)
Q Consensus 651 ~~~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~l~~c~~l~~~~~~---~~~L~~L~L~~~~i~-~l 725 (1103)
+|.....+|..+..+++|+.|++++|.....+|..+ .+.+|+.|++++|.....+|.. .++|+.|++++|.+. .+
T Consensus 317 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~ 396 (968)
T PLN00113 317 SNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEI 396 (968)
T ss_pred CCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccC
Confidence 555444555555555555555555554444444443 4455555555555443344432 234556666666555 45
Q ss_pred CccccCCCCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcc
Q 044579 726 PSSVECLTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSID 805 (1103)
Q Consensus 726 p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~ 805 (1103)
|.++..+++|+.|+|++|.+.+.+|..+..+++|+.|++++|..... +|..+..+++|+.|+|++|.+.+.+|..
T Consensus 397 p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~---~~~~~~~l~~L~~L~L~~n~~~~~~p~~-- 471 (968)
T PLN00113 397 PKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGR---INSRKWDMPSLQMLSLARNKFFGGLPDS-- 471 (968)
T ss_pred CHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCc---cChhhccCCCCcEEECcCceeeeecCcc--
Confidence 55666666777777777766666666677777777777776654333 5555667777777777777776666532
Q ss_pred cCCCCCCCEEeCCCCCcc-ccCccccCCCCCCEEeccCCcCCcccCccccccccceecccccccccCCCCchhh---hhh
Q 044579 806 FCCLSSLQWLDLSGNNFE-SLPSSIKQLSQLRKLDLSNCNMLLSLPELPLFLEDLEARNCKRLQFLPEIPSCLE---ELD 881 (1103)
Q Consensus 806 ~~~l~~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~~~~c~~l~~~~~~p~~l~---~L~ 881 (1103)
...++|+.|+|++|+++ .+|..+..+++|+.|+|++|.+.+.+|+.+..+..|..+++++|.+.+.+|..+. +|.
T Consensus 472 -~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 550 (968)
T PLN00113 472 -FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLS 550 (968)
T ss_pred -cccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCC
Confidence 23578888888888887 6777788888899999999988888888888888888888888888888877554 455
Q ss_pred hcccCCCCCCCCCccchhcccccceeeecccc
Q 044579 882 ASMLEKPPKTSHVDEFWTEEMLSIKFKFTNCL 913 (1103)
Q Consensus 882 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~ 913 (1103)
.+.+++|.....++........+..+++++|.
T Consensus 551 ~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~ 582 (968)
T PLN00113 551 QLDLSQNQLSGEIPKNLGNVESLVQVNISHNH 582 (968)
T ss_pred EEECCCCcccccCChhHhcCcccCEEeccCCc
Confidence 66677777766665554444445667777774
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.93 E-value=1.5e-26 Score=253.01 Aligned_cols=365 Identities=22% Similarity=0.203 Sum_probs=272.9
Q ss_pred ccccCCCCcceeechHhhhcCcccceEEEecCCCCCccccCcceecCCCcccCCCceEEEEEcCCCCCCCCCcc--cccc
Q 044579 520 IFLDLSKTKDIHLSSQAFANMSNLRLLKFYMPERGGVPIMSSKVHLDQGLEDLPEKLRYLHWHGYPLKTLPFDF--ELEN 597 (1103)
Q Consensus 520 i~L~l~~~~~~~~~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~--~l~~ 597 (1103)
-.||+++|...+++...|.+++||+.+++..|.+.. +|. +.....+|+.|+|.+|.|.++.+.- .++.
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~---------IP~-f~~~sghl~~L~L~~N~I~sv~se~L~~l~a 150 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTR---------IPR-FGHESGHLEKLDLRHNLISSVTSEELSALPA 150 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhhh---------ccc-ccccccceeEEeeeccccccccHHHHHhHhh
Confidence 358999999999999999999999999999986643 332 2333447999999999999887654 6889
Q ss_pred ccccccccccccccccc-cccCCcceEecCCCCCCCccCC-CCCCCCCccEEEecCCCCCCcccccccCCCcccEEEccC
Q 044579 598 LIELRLPYSKVEQIWEG-KKEASKLKSIDLCHSQHLIRMP-DLSEIPNLERTNFFNCTNLVLVPSSIQNFNNLSMLCFRG 675 (1103)
Q Consensus 598 L~~L~L~~n~i~~l~~~-~~~l~~L~~L~L~~~~~~~~~p-~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~ 675 (1103)
|+.|||+.|.|..++.. +..-.++++|+|++|++...-. .|.++.+|..|.|++|.....-+.+|.+|++|+.|+|..
T Consensus 151 lrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnr 230 (873)
T KOG4194|consen 151 LRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNR 230 (873)
T ss_pred hhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccc
Confidence 99999999999999854 6666899999999998754433 488999999999999766555556777899999999988
Q ss_pred CCCCcccC-CCC-CCCCCcEEEccCCcCCCcCCC----cCCCccEEecCCccceecCc-cccCCCCCCEEecCCCccccc
Q 044579 676 CESLRSFP-RDI-HFVSPVTIDFSFCVNLTEFPK----ISGKITELNLCDTAIEEVPS-SVECLTNLKELYLSRCSTLNR 748 (1103)
Q Consensus 676 ~~~l~~lp-~~~-~l~~L~~L~l~~c~~l~~~~~----~~~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~~ 748 (1103)
|. ++... ..+ .+++|+.|.|..+ .+..+.+ .+.+|++|+|..|.+..+.. |+.+|++|+.|+|++|.+...
T Consensus 231 N~-irive~ltFqgL~Sl~nlklqrN-~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~ri 308 (873)
T KOG4194|consen 231 NR-IRIVEGLTFQGLPSLQNLKLQRN-DISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRI 308 (873)
T ss_pred cc-eeeehhhhhcCchhhhhhhhhhc-CcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhhee
Confidence 54 33331 222 7888888888774 3444433 34678899999999887765 678899999999999988888
Q ss_pred ccccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCcc-cc--
Q 044579 749 LSTSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFE-SL-- 825 (1103)
Q Consensus 749 lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~-~l-- 825 (1103)
-+++....++|+.|+|++|..... -+.++..|..|++|.|+.|.+.. +. ...|.++++|++|||++|.+. .+
T Consensus 309 h~d~WsftqkL~~LdLs~N~i~~l---~~~sf~~L~~Le~LnLs~Nsi~~-l~-e~af~~lssL~~LdLr~N~ls~~IED 383 (873)
T KOG4194|consen 309 HIDSWSFTQKLKELDLSSNRITRL---DEGSFRVLSQLEELNLSHNSIDH-LA-EGAFVGLSSLHKLDLRSNELSWCIED 383 (873)
T ss_pred ecchhhhcccceeEeccccccccC---ChhHHHHHHHhhhhcccccchHH-HH-hhHHHHhhhhhhhcCcCCeEEEEEec
Confidence 888888889999999998653332 34567788888889998887543 22 455677888888888888877 22
Q ss_pred -CccccCCCCCCEEeccCCcCCcccC-ccccccccceecccccccccCCCCchhh--hhhhcccCCCCCCCCCccchhcc
Q 044579 826 -PSSIKQLSQLRKLDLSNCNMLLSLP-ELPLFLEDLEARNCKRLQFLPEIPSCLE--ELDASMLEKPPKTSHVDEFWTEE 901 (1103)
Q Consensus 826 -p~~i~~l~~L~~L~L~~n~~l~~lp-~~~~~L~~L~~~~c~~l~~~~~~p~~l~--~L~~~~~~~~~~~~~~~~~~~~~ 901 (1103)
...+..|++|+.|++.+|+ ++++| ..+..|+.|+.+|+.+|-+-..-|..++ +|+.+.++..+.+...+..|-..
T Consensus 384 aa~~f~gl~~LrkL~l~gNq-lk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl~q 462 (873)
T KOG4194|consen 384 AAVAFNGLPSLRKLRLTGNQ-LKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQLKWLAQ 462 (873)
T ss_pred chhhhccchhhhheeecCce-eeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEeccHHHHHH
Confidence 2345678888888888887 45565 4677788888888888876555444333 45556665555555555556554
Q ss_pred c
Q 044579 902 M 902 (1103)
Q Consensus 902 ~ 902 (1103)
+
T Consensus 463 W 463 (873)
T KOG4194|consen 463 W 463 (873)
T ss_pred H
Confidence 4
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=2.8e-27 Score=259.33 Aligned_cols=313 Identities=23% Similarity=0.314 Sum_probs=256.9
Q ss_pred cCCCCcceeechHhhhcCcccceEEEecCCCCCccccCcceecCCCcccCCCceEEEEEcCCCCCCCCCcc-cccccccc
Q 044579 523 DLSKTKDIHLSSQAFANMSNLRLLKFYMPERGGVPIMSSKVHLDQGLEDLPEKLRYLHWHGYPLKTLPFDF-ELENLIEL 601 (1103)
Q Consensus 523 ~l~~~~~~~~~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L 601 (1103)
.+++|....+. ..++.++.||.+.+..|.+ .+.-+|.+++.+- .|..|++++|.++..|... ..+++.+|
T Consensus 61 s~~HN~L~~vh-GELs~Lp~LRsv~~R~N~L-------KnsGiP~diF~l~-dLt~lDLShNqL~EvP~~LE~AKn~iVL 131 (1255)
T KOG0444|consen 61 SMAHNQLISVH-GELSDLPRLRSVIVRDNNL-------KNSGIPTDIFRLK-DLTILDLSHNQLREVPTNLEYAKNSIVL 131 (1255)
T ss_pred hhhhhhhHhhh-hhhccchhhHHHhhhcccc-------ccCCCCchhcccc-cceeeecchhhhhhcchhhhhhcCcEEE
Confidence 34445444443 2467788888888888877 4556778888876 8999999999999999888 78899999
Q ss_pred ccccccccccccc-cccCCcceEecCCCCCCCccCCCCCCCCCccEEEecCCCCCCcccccccCCCcccEEEccCCC-CC
Q 044579 602 RLPYSKVEQIWEG-KKEASKLKSIDLCHSQHLIRMPDLSEIPNLERTNFFNCTNLVLVPSSIQNFNNLSMLCFRGCE-SL 679 (1103)
Q Consensus 602 ~L~~n~i~~l~~~-~~~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~~~-~l 679 (1103)
+|++|+|+++|.. +.+|..|-+||||+|++-..+|.+..+.+|++|.|++|+....--.-+..+++|+.|.+++.+ -+
T Consensus 132 NLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl 211 (1255)
T KOG0444|consen 132 NLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTL 211 (1255)
T ss_pred EcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchh
Confidence 9999999999965 678899999999999977777778899999999999987543322334457788888888754 35
Q ss_pred cccCCCC-CCCCCcEEEccCCcCCCcCCCc---CCCccEEecCCccceecCccccCCCCCCEEecCCCcccccccccccC
Q 044579 680 RSFPRDI-HFVSPVTIDFSFCVNLTEFPKI---SGKITELNLCDTAIEEVPSSVECLTNLKELYLSRCSTLNRLSTSICK 755 (1103)
Q Consensus 680 ~~lp~~~-~l~~L~~L~l~~c~~l~~~~~~---~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~ 755 (1103)
..+|.++ .+.+|..+++|. +++..+|+. +.+|+.|+|++|.|+++....+...+|++|+|+.|+ +..+|..+++
T Consensus 212 ~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~avcK 289 (1255)
T KOG0444|consen 212 DNIPTSLDDLHNLRDVDLSE-NNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQ-LTVLPDAVCK 289 (1255)
T ss_pred hcCCCchhhhhhhhhccccc-cCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccch-hccchHHHhh
Confidence 6788888 788899999985 667778875 457889999999999999888889999999999986 5689999999
Q ss_pred CCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCccccCccccCCCCC
Q 044579 756 LKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESLPSSIKQLSQL 835 (1103)
Q Consensus 756 l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L 835 (1103)
|+.|+.|.+.+|... ...+|+.++.|.+|+.+..++|. ++-. |..++.+..|+.|.|+.|.+.++|+.|.-|+.|
T Consensus 290 L~kL~kLy~n~NkL~--FeGiPSGIGKL~~Levf~aanN~-LElV--PEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l 364 (1255)
T KOG0444|consen 290 LTKLTKLYANNNKLT--FEGIPSGIGKLIQLEVFHAANNK-LELV--PEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDL 364 (1255)
T ss_pred hHHHHHHHhccCccc--ccCCccchhhhhhhHHHHhhccc-cccC--chhhhhhHHHHHhcccccceeechhhhhhcCCc
Confidence 999999999887532 46799999999999999998876 5666 556788999999999999999999999999999
Q ss_pred CEEeccCCcCCcccCc
Q 044579 836 RKLDLSNCNMLLSLPE 851 (1103)
Q Consensus 836 ~~L~L~~n~~l~~lp~ 851 (1103)
+.|||.+|+.+.-.|.
T Consensus 365 ~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 365 KVLDLRENPNLVMPPK 380 (1255)
T ss_pred ceeeccCCcCccCCCC
Confidence 9999999998876554
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=1.5e-26 Score=253.59 Aligned_cols=312 Identities=22% Similarity=0.324 Sum_probs=246.7
Q ss_pred hHhhhcCcccceEEEecCCCCCccccCcceecCCCcccCCCceEEEEEcCCCCC--CCCCcc-ccccccccccccccccc
Q 044579 534 SQAFANMSNLRLLKFYMPERGGVPIMSSKVHLDQGLEDLPEKLRYLHWHGYPLK--TLPFDF-ELENLIELRLPYSKVEQ 610 (1103)
Q Consensus 534 ~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~--~lp~~~-~l~~L~~L~L~~n~i~~ 610 (1103)
|+.++.+.+|..|.+.+|.+ ..+...+..+| .||.+.+..|.++ .+|.++ .+..|..|||++|++++
T Consensus 48 PeEL~~lqkLEHLs~~HN~L---------~~vhGELs~Lp-~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~E 117 (1255)
T KOG0444|consen 48 PEELSRLQKLEHLSMAHNQL---------ISVHGELSDLP-RLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLRE 117 (1255)
T ss_pred hHHHHHHhhhhhhhhhhhhh---------Hhhhhhhccch-hhHHHhhhccccccCCCCchhcccccceeeecchhhhhh
Confidence 45566777777777776633 34556677777 7888888888877 567655 88999999999999999
Q ss_pred cccccccCCcceEecCCCCCCCccCCC--CCCCCCccEEEecCCCCCCcccccccCCCcccEEEccCCCC----CcccCC
Q 044579 611 IWEGKKEASKLKSIDLCHSQHLIRMPD--LSEIPNLERTNFFNCTNLVLVPSSIQNFNNLSMLCFRGCES----LRSFPR 684 (1103)
Q Consensus 611 l~~~~~~l~~L~~L~L~~~~~~~~~p~--l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~~~~----l~~lp~ 684 (1103)
.|.++...+++-.|+||+|++ ..+|. |.+++.|-.|+|++| .+..+|+-+..|.+|++|.|++|.. ++.+|
T Consensus 118 vP~~LE~AKn~iVLNLS~N~I-etIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLP- 194 (1255)
T KOG0444|consen 118 VPTNLEYAKNSIVLNLSYNNI-ETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLP- 194 (1255)
T ss_pred cchhhhhhcCcEEEEcccCcc-ccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCc-
Confidence 999998889999999999874 44554 778888889999884 6778888899999999999998763 33444
Q ss_pred CCCCCCCcEEEccCCcC-CCcCCCc---CCCccEEecCCccceecCccccCCCCCCEEecCCCcccccccccccCCCCCc
Q 044579 685 DIHFVSPVTIDFSFCVN-LTEFPKI---SGKITELNLCDTAIEEVPSSVECLTNLKELYLSRCSTLNRLSTSICKLKSLH 760 (1103)
Q Consensus 685 ~~~l~~L~~L~l~~c~~-l~~~~~~---~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~ 760 (1103)
.+++|+.|.+++... +..+|.. +.||..++++.|.+..+|+.+.++++|+.|+|++|.+. .+....+...+|+
T Consensus 195 --smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lE 271 (1255)
T KOG0444|consen 195 --SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLE 271 (1255)
T ss_pred --cchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhh
Confidence 477888888887543 4466654 45788889999999999999999999999999998754 4555567778899
Q ss_pred EEeecCCCCCCccccCCccccCCCCCCeeeccCCCCC-CCCCCCcccCCCCCCCEEeCCCCCccccCccccCCCCCCEEe
Q 044579 761 ELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKL-NKLPHSIDFCCLSSLQWLDLSGNNFESLPSSIKQLSQLRKLD 839 (1103)
Q Consensus 761 ~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~-~~lp~~~~~~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~ 839 (1103)
+|+||.|+ +..+|..+..|++|+.|.+.+|.+. ..+ |..++.+.+|+.+..++|+++-+|+++..|..|+.|.
T Consensus 272 tLNlSrNQ----Lt~LP~avcKL~kL~kLy~n~NkL~FeGi--PSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~ 345 (1255)
T KOG0444|consen 272 TLNLSRNQ----LTVLPDAVCKLTKLTKLYANNNKLTFEGI--PSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLK 345 (1255)
T ss_pred hhccccch----hccchHHHhhhHHHHHHHhccCcccccCC--ccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhc
Confidence 99999854 4558999999999999999888754 344 5667889999999999999999999999999999999
Q ss_pred ccCCcCCcccCccccccccceeccccccc
Q 044579 840 LSNCNMLLSLPELPLFLEDLEARNCKRLQ 868 (1103)
Q Consensus 840 L~~n~~l~~lp~~~~~L~~L~~~~c~~l~ 868 (1103)
|+.|+ +-.+|+.+.-|+.|.++++..|.
T Consensus 346 L~~Nr-LiTLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 346 LDHNR-LITLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred ccccc-eeechhhhhhcCCcceeeccCCc
Confidence 99887 45688877777777777777665
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.89 E-value=1.9e-24 Score=236.61 Aligned_cols=309 Identities=22% Similarity=0.293 Sum_probs=226.7
Q ss_pred cccCCCCcceeechHhhhcCcccceEEEecCCCCCccccCcceecCCCcccCCCceEEEEEcCCCCCCCCCcc--ccccc
Q 044579 521 FLDLSKTKDIHLSSQAFANMSNLRLLKFYMPERGGVPIMSSKVHLDQGLEDLPEKLRYLHWHGYPLKTLPFDF--ELENL 598 (1103)
Q Consensus 521 ~L~l~~~~~~~~~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~--~l~~L 598 (1103)
.|++.+|.+..+..+.++-++.||+|||+.|.+... +..-+.-..++++|+|++|.|+.+.... .+.+|
T Consensus 129 ~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i---------~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL 199 (873)
T KOG4194|consen 129 KLDLRHNLISSVTSEELSALPALRSLDLSRNLISEI---------PKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSL 199 (873)
T ss_pred EEeeeccccccccHHHHHhHhhhhhhhhhhchhhcc---------cCCCCCCCCCceEEeeccccccccccccccccchh
Confidence 567888888899999999999999999999976433 2222222237999999999999887654 78899
Q ss_pred ccccccccccccccc-ccccCCcceEecCCCCCCCcc-CCCCCCCCCccEEEecCCCCCCcccccccCCCcccEEEccCC
Q 044579 599 IELRLPYSKVEQIWE-GKKEASKLKSIDLCHSQHLIR-MPDLSEIPNLERTNFFNCTNLVLVPSSIQNFNNLSMLCFRGC 676 (1103)
Q Consensus 599 ~~L~L~~n~i~~l~~-~~~~l~~L~~L~L~~~~~~~~-~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~~ 676 (1103)
..|.|+.|+|+.+|. .|++|++|+.|+|..|++-.. --.|.++++|+.|.|..|..-..-...|..|.++++|+|..|
T Consensus 200 ~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N 279 (873)
T KOG4194|consen 200 LTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN 279 (873)
T ss_pred eeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccc
Confidence 999999999999985 578899999999999985332 335899999999999998766666677889999999999985
Q ss_pred CCCcccCCC-C-CCCCCcEEEccCCcCCCcCC---CcCCCccEEecCCccceecCc-cccCCCCCCEEecCCCccccccc
Q 044579 677 ESLRSFPRD-I-HFVSPVTIDFSFCVNLTEFP---KISGKITELNLCDTAIEEVPS-SVECLTNLKELYLSRCSTLNRLS 750 (1103)
Q Consensus 677 ~~l~~lp~~-~-~l~~L~~L~l~~c~~l~~~~---~~~~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~~lp 750 (1103)
+ +..+... + ++++|+.|+++++..-+--+ +...+|+.|+|+.|.|+.+++ ++..|..|++|+|++|++...--
T Consensus 280 ~-l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e 358 (873)
T KOG4194|consen 280 R-LQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAE 358 (873)
T ss_pred h-hhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHh
Confidence 4 4444333 2 78888888888754322211 234677888888888887765 46777788888888877665555
Q ss_pred ccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCcccc-Cccc
Q 044579 751 TSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESL-PSSI 829 (1103)
Q Consensus 751 ~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~l-p~~i 829 (1103)
..|..+++|++|+|+.|...-.++.-...+..|++|+.|.|.||+ +..+| ..+|.++++|++|+|.+|.|.++ |..+
T Consensus 359 ~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq-lk~I~-krAfsgl~~LE~LdL~~NaiaSIq~nAF 436 (873)
T KOG4194|consen 359 GAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ-LKSIP-KRAFSGLEALEHLDLGDNAIASIQPNAF 436 (873)
T ss_pred hHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce-eeecc-hhhhccCcccceecCCCCcceeeccccc
Confidence 567777888888887765544444444556677888888887776 44555 44567778888888888877765 4455
Q ss_pred cCCCCCCEEeccC
Q 044579 830 KQLSQLRKLDLSN 842 (1103)
Q Consensus 830 ~~l~~L~~L~L~~ 842 (1103)
..+ .|+.|.+..
T Consensus 437 e~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 437 EPM-ELKELVMNS 448 (873)
T ss_pred ccc-hhhhhhhcc
Confidence 555 677776543
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.87 E-value=1.6e-25 Score=235.02 Aligned_cols=230 Identities=21% Similarity=0.252 Sum_probs=107.1
Q ss_pred ccCCCCcceeechHhhhcCcccceEEEecCCCCCccccCcceecCCCcccCCCceEEEEEcCCCCCCCCCcc-ccccccc
Q 044579 522 LDLSKTKDIHLSSQAFANMSNLRLLKFYMPERGGVPIMSSKVHLDQGLEDLPEKLRYLHWHGYPLKTLPFDF-ELENLIE 600 (1103)
Q Consensus 522 L~l~~~~~~~~~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~ 600 (1103)
++...+....++ .+...+..++.|++++|. ...+|+.+..++ +|+.|+.+.|.++.+|+.+ .+..|..
T Consensus 73 l~~~~n~l~~lp-~aig~l~~l~~l~vs~n~---------ls~lp~~i~s~~-~l~~l~~s~n~~~el~~~i~~~~~l~d 141 (565)
T KOG0472|consen 73 LNVHDNKLSQLP-AAIGELEALKSLNVSHNK---------LSELPEQIGSLI-SLVKLDCSSNELKELPDSIGRLLDLED 141 (565)
T ss_pred EEeccchhhhCC-HHHHHHHHHHHhhcccch---------HhhccHHHhhhh-hhhhhhccccceeecCchHHHHhhhhh
Confidence 334444333333 234455555555555552 233444444444 4555555555555555554 4555555
Q ss_pred cccccccccccccccccCCcceEecCCCCCCCccCCCCCCCCCccEEEecCCCCCCcccccccCCCcccEEEccCCCCCc
Q 044579 601 LRLPYSKVEQIWEGKKEASKLKSIDLCHSQHLIRMPDLSEIPNLERTNFFNCTNLVLVPSSIQNFNNLSMLCFRGCESLR 680 (1103)
Q Consensus 601 L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~~~~l~ 680 (1103)
|+..+|++.++|+++.++.+|..|++.+|+.....|+.-+++.|++|+... +.++.+|+.++.+.+|..|+|.. +++.
T Consensus 142 l~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~-Nki~ 219 (565)
T KOG0472|consen 142 LDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNS-NLLETLPPELGGLESLELLYLRR-NKIR 219 (565)
T ss_pred hhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccch-hhhhcCChhhcchhhhHHHHhhh-cccc
Confidence 555555555555555555555555555555444444444455555555444 24445555555555555555555 2344
Q ss_pred ccCCCCCCCCCcEEEccCCcCCCcCCC----cCCCccEEecCCccceecCccccCCCCCCEEecCCCcccccccccccCC
Q 044579 681 SFPRDIHFVSPVTIDFSFCVNLTEFPK----ISGKITELNLCDTAIEEVPSSVECLTNLKELYLSRCSTLNRLSTSICKL 756 (1103)
Q Consensus 681 ~lp~~~~l~~L~~L~l~~c~~l~~~~~----~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l 756 (1103)
.+|..-.+..|.++.++. +.++.+|. .+.++..|+|..|+++++|..+..+.+|.+||+++|.+ ..+|.+++++
T Consensus 220 ~lPef~gcs~L~Elh~g~-N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~i-s~Lp~sLgnl 297 (565)
T KOG0472|consen 220 FLPEFPGCSLLKELHVGE-NQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDI-SSLPYSLGNL 297 (565)
T ss_pred cCCCCCccHHHHHHHhcc-cHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCcc-ccCCcccccc
Confidence 444322333344443333 22222221 12233444444444444444444444444444444432 2233344444
Q ss_pred CCCcEEeecCC
Q 044579 757 KSLHELILSDC 767 (1103)
Q Consensus 757 ~~L~~L~L~~~ 767 (1103)
.|+.|-+.||
T Consensus 298 -hL~~L~leGN 307 (565)
T KOG0472|consen 298 -HLKFLALEGN 307 (565)
T ss_pred -eeeehhhcCC
Confidence 4444444443
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=2.7e-21 Score=251.46 Aligned_cols=290 Identities=30% Similarity=0.481 Sum_probs=225.5
Q ss_pred HhhhcC-cccceEEEecCCCCCccccCcceecCCCcccCCCceEEEEEcCCCCCCCCCcc-cccccccccccccc-cccc
Q 044579 535 QAFANM-SNLRLLKFYMPERGGVPIMSSKVHLDQGLEDLPEKLRYLHWHGYPLKTLPFDF-ELENLIELRLPYSK-VEQI 611 (1103)
Q Consensus 535 ~~f~~l-~~Lr~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~-i~~l 611 (1103)
..|..+ .+||.|.+.++.+. .+|..+. +.+|+.|++.++.++.+|..+ .+++|+.|+|+++. ++.+
T Consensus 582 ~~~~~lp~~Lr~L~~~~~~l~---------~lP~~f~--~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~i 650 (1153)
T PLN03210 582 EGFDYLPPKLRLLRWDKYPLR---------CMPSNFR--PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEI 650 (1153)
T ss_pred cchhhcCcccEEEEecCCCCC---------CCCCcCC--ccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcC
Confidence 345555 46899998877443 3444442 458888888888888888766 68888888888764 5666
Q ss_pred ccccccCCcceEecCCCCCCCccCCC-CCCCCCccEEEecCCCCCCcccccccCCCcccEEEccCCCCCcccCCCCCCCC
Q 044579 612 WEGKKEASKLKSIDLCHSQHLIRMPD-LSEIPNLERTNFFNCTNLVLVPSSIQNFNNLSMLCFRGCESLRSFPRDIHFVS 690 (1103)
Q Consensus 612 ~~~~~~l~~L~~L~L~~~~~~~~~p~-l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~ 690 (1103)
|. +..+++|+.|+|++|..+..+|. +..+++|+.|++++|+.+..+|..+ ++++|+.|++++|..+..+|.. ..+
T Consensus 651 p~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~--~~n 726 (1153)
T PLN03210 651 PD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI--STN 726 (1153)
T ss_pred Cc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc--cCC
Confidence 64 67788888888888887777775 7888888888888888888888766 7888888888888877777643 345
Q ss_pred CcEEEccCCcCCCcCCCc---------------------------------CCCccEEecCCcc-ceecCccccCCCCCC
Q 044579 691 PVTIDFSFCVNLTEFPKI---------------------------------SGKITELNLCDTA-IEEVPSSVECLTNLK 736 (1103)
Q Consensus 691 L~~L~l~~c~~l~~~~~~---------------------------------~~~L~~L~L~~~~-i~~lp~~~~~l~~L~ 736 (1103)
|+.|+++++. +..+|.. ..+|+.|+|++|. +.++|.+++++++|+
T Consensus 727 L~~L~L~~n~-i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~ 805 (1153)
T PLN03210 727 ISWLDLDETA-IEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLE 805 (1153)
T ss_pred cCeeecCCCc-cccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCC
Confidence 6666666543 3333321 2467888888874 558999999999999
Q ss_pred EEecCCCcccccccccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCEEe
Q 044579 737 ELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLD 816 (1103)
Q Consensus 737 ~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~ 816 (1103)
.|+|++|..++.+|..+ ++++|+.|+|++|..+.. +|.. .++|+.|+|++|.+ ..+| ..+..+++|+.|+
T Consensus 806 ~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~---~p~~---~~nL~~L~Ls~n~i-~~iP--~si~~l~~L~~L~ 875 (1153)
T PLN03210 806 HLEIENCINLETLPTGI-NLESLESLDLSGCSRLRT---FPDI---STNISDLNLSRTGI-EEVP--WWIEKFSNLSFLD 875 (1153)
T ss_pred EEECCCCCCcCeeCCCC-CccccCEEECCCCCcccc---cccc---ccccCEeECCCCCC-ccCh--HHHhcCCCCCEEE
Confidence 99999999999999876 799999999999987665 4542 46899999999875 4664 4567899999999
Q ss_pred CCCC-CccccCccccCCCCCCEEeccCCcCCcccC
Q 044579 817 LSGN-NFESLPSSIKQLSQLRKLDLSNCNMLLSLP 850 (1103)
Q Consensus 817 Ls~n-~l~~lp~~i~~l~~L~~L~L~~n~~l~~lp 850 (1103)
|++| +++.+|..+..+++|+.|++++|..+..++
T Consensus 876 L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 876 MNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred CCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence 9995 888999999999999999999999877554
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.86 E-value=1.1e-24 Score=228.88 Aligned_cols=257 Identities=23% Similarity=0.295 Sum_probs=196.2
Q ss_pred ccccCCCCcceeechHhhhcCcccceEEEecCCCCCccccCcceecCCCcccCCCceEEEEEcCCCCCCCCCcc-ccccc
Q 044579 520 IFLDLSKTKDIHLSSQAFANMSNLRLLKFYMPERGGVPIMSSKVHLDQGLEDLPEKLRYLHWHGYPLKTLPFDF-ELENL 598 (1103)
Q Consensus 520 i~L~l~~~~~~~~~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~l~~L 598 (1103)
..++++.|....+. ....++..|.+|++.+|. ...+|..+..+- ++..|+.++|.+..+|... .+.+|
T Consensus 48 ~~lils~N~l~~l~-~dl~nL~~l~vl~~~~n~---------l~~lp~aig~l~-~l~~l~vs~n~ls~lp~~i~s~~~l 116 (565)
T KOG0472|consen 48 QKLILSHNDLEVLR-EDLKNLACLTVLNVHDNK---------LSQLPAAIGELE-ALKSLNVSHNKLSELPEQIGSLISL 116 (565)
T ss_pred hhhhhccCchhhcc-HhhhcccceeEEEeccch---------hhhCCHHHHHHH-HHHHhhcccchHhhccHHHhhhhhh
Confidence 34455555444433 345677777777777773 345565555554 6677778888888887766 67788
Q ss_pred cccccccccccccccccccCCcceEecCCCCCCCccCCCCCCCCCccEEEecCCCCCCcccccccCCCcccEEEccCCCC
Q 044579 599 IELRLPYSKVEQIWEGKKEASKLKSIDLCHSQHLIRMPDLSEIPNLERTNFFNCTNLVLVPSSIQNFNNLSMLCFRGCES 678 (1103)
Q Consensus 599 ~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~~~~ 678 (1103)
+.|+.++|.+..++++++.+..|..|+..+|++...++++..+.+|..|++.+|. +..+|+..-+++.|++|+... +.
T Consensus 117 ~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~-N~ 194 (565)
T KOG0472|consen 117 VKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNS-NL 194 (565)
T ss_pred hhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccch-hh
Confidence 8888888888888888888888888888888777777777778888888888754 444454444588888888766 57
Q ss_pred CcccCCCC-CCCCCcEEEccCCcCCCcCCCcCC--CccEEecCCccceecCcccc-CCCCCCEEecCCCccccccccccc
Q 044579 679 LRSFPRDI-HFVSPVTIDFSFCVNLTEFPKISG--KITELNLCDTAIEEVPSSVE-CLTNLKELYLSRCSTLNRLSTSIC 754 (1103)
Q Consensus 679 l~~lp~~~-~l~~L~~L~l~~c~~l~~~~~~~~--~L~~L~L~~~~i~~lp~~~~-~l~~L~~L~L~~~~~~~~lp~~l~ 754 (1103)
++.+|..+ .+.+|+.|++.. +++..+|++.+ .|++|+++.|.|+.+|.... ++++|..|||.+|+ +++.|..++
T Consensus 195 L~tlP~~lg~l~~L~~LyL~~-Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNk-lke~Pde~c 272 (565)
T KOG0472|consen 195 LETLPPELGGLESLELLYLRR-NKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNK-LKEVPDEIC 272 (565)
T ss_pred hhcCChhhcchhhhHHHHhhh-cccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccc-cccCchHHH
Confidence 78888877 677788888877 56777776554 48899999999999998765 89999999999986 578899999
Q ss_pred CCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCC
Q 044579 755 KLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSK 796 (1103)
Q Consensus 755 ~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~ 796 (1103)
.+.+|.+||+|+| .+..+|.+++++ .|+.|.+.||++
T Consensus 273 lLrsL~rLDlSNN----~is~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 273 LLRSLERLDLSNN----DISSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred HhhhhhhhcccCC----ccccCCcccccc-eeeehhhcCCch
Confidence 9999999999995 566799999999 999999999864
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.81 E-value=7.8e-22 Score=228.07 Aligned_cols=332 Identities=19% Similarity=0.157 Sum_probs=199.6
Q ss_pred cccCCCCcceeechHhhhcCcccceEEEecCCCCCccccCcceecCCCcccCCCceEEEEEcCCCCCCCCCcc-cccccc
Q 044579 521 FLDLSKTKDIHLSSQAFANMSNLRLLKFYMPERGGVPIMSSKVHLDQGLEDLPEKLRYLHWHGYPLKTLPFDF-ELENLI 599 (1103)
Q Consensus 521 ~L~l~~~~~~~~~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~l~~L~ 599 (1103)
.+++..|-....+-+...+.-+|+.|++++|.+ ..+|..+..++ .|+.|+++.|-+.+.|... ++.+|+
T Consensus 25 ~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~---------~~fp~~it~l~-~L~~ln~s~n~i~~vp~s~~~~~~l~ 94 (1081)
T KOG0618|consen 25 ILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQI---------SSFPIQITLLS-HLRQLNLSRNYIRSVPSSCSNMRNLQ 94 (1081)
T ss_pred hhhccccccccCchHHhhheeeeEEeecccccc---------ccCCchhhhHH-HHhhcccchhhHhhCchhhhhhhcch
Confidence 445555555554555566666699999998855 34555566665 7888888888888888666 788888
Q ss_pred ccccccccccccccccccCCcceEecCCCCCCCccCCCCCCCCCccEEEec-------------------CCCCCCcccc
Q 044579 600 ELRLPYSKVEQIWEGKKEASKLKSIDLCHSQHLIRMPDLSEIPNLERTNFF-------------------NCTNLVLVPS 660 (1103)
Q Consensus 600 ~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~-------------------~~~~l~~~~~ 660 (1103)
+|+|.+|.+..+|.++..+++|++|+++.|.+...++.+..+..++.+..+ .+.....++.
T Consensus 95 ~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~ 174 (1081)
T KOG0618|consen 95 YLNLKNNRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLI 174 (1081)
T ss_pred hheeccchhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhc
Confidence 888888888888888888888888888888765544444444444444444 4444444555
Q ss_pred cccCCCcccEEEccCCCCC----------cccCCC--------CCCCCCcEEEccCCcCCCcCCC-cCCCccEEecCCcc
Q 044579 661 SIQNFNNLSMLCFRGCESL----------RSFPRD--------IHFVSPVTIDFSFCVNLTEFPK-ISGKITELNLCDTA 721 (1103)
Q Consensus 661 ~i~~l~~L~~L~L~~~~~l----------~~lp~~--------~~l~~L~~L~l~~c~~l~~~~~-~~~~L~~L~L~~~~ 721 (1103)
.+.+++. .|+|++|... +.+-.. +..++|+.|+.+.|...+..+. ...+|++++++.|.
T Consensus 175 ~i~~l~~--~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~ 252 (1081)
T KOG0618|consen 175 DIYNLTH--QLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNN 252 (1081)
T ss_pred chhhhhe--eeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhh
Confidence 5555555 4666665433 111100 1335566666666665544443 34579999999999
Q ss_pred ceecCccccCCCCCCEEecCCCccccccc-----------------------ccccCCCCCcEEeecCCCCCCc------
Q 044579 722 IEEVPSSVECLTNLKELYLSRCSTLNRLS-----------------------TSICKLKSLHELILSDCLSLET------ 772 (1103)
Q Consensus 722 i~~lp~~~~~l~~L~~L~L~~~~~~~~lp-----------------------~~l~~l~~L~~L~L~~~~~l~~------ 772 (1103)
+..+|+|++.+.+|+.|+..+|.+ ..+| .....+++|++|+|..|.....
T Consensus 253 l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~ 331 (1081)
T KOG0618|consen 253 LSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLA 331 (1081)
T ss_pred hhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHh
Confidence 999999999999999999998876 4444 3344455666666655422111
Q ss_pred ---------------cccCCcc-ccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCccccCc-cccCCCCC
Q 044579 773 ---------------ITELPSS-FANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESLPS-SIKQLSQL 835 (1103)
Q Consensus 773 ---------------i~~lp~~-~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L 835 (1103)
+..+|.. -..++.|+.|.+.+|.+.+.. ...+.++.+|+.|+|++|.+.++|. .+.++..|
T Consensus 332 v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c--~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~L 409 (1081)
T KOG0618|consen 332 VLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSC--FPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEEL 409 (1081)
T ss_pred hhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccc--hhhhccccceeeeeecccccccCCHHHHhchHHh
Confidence 0000100 001122233333333322222 1123445666666666666666663 34566666
Q ss_pred CEEeccCCcCCcccCccccccccceeccccccc
Q 044579 836 RKLDLSNCNMLLSLPELPLFLEDLEARNCKRLQ 868 (1103)
Q Consensus 836 ~~L~L~~n~~l~~lp~~~~~L~~L~~~~c~~l~ 868 (1103)
+.|+||+|+ ++.+|.....+..|..+.|.+|+
T Consensus 410 eeL~LSGNk-L~~Lp~tva~~~~L~tL~ahsN~ 441 (1081)
T KOG0618|consen 410 EELNLSGNK-LTTLPDTVANLGRLHTLRAHSNQ 441 (1081)
T ss_pred HHHhcccch-hhhhhHHHHhhhhhHHHhhcCCc
Confidence 666666665 34455444444444444444444
No 15
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.80 E-value=2.5e-20 Score=182.33 Aligned_cols=130 Identities=33% Similarity=0.577 Sum_probs=113.8
Q ss_pred EEEcCccccccCchHHHHHHHHHhC--CCeEEeeCccccCCCcchHHHHHHHhhcceEEEEecCCccCchhhHHHHHHHH
Q 044579 12 VFLSFRGEDTRNGFTSHLAAALHRK--QIQFFIDDEELKKGDEISPALSNAIESSDISIIIFSKGYASSRWCLNELVKIL 89 (1103)
Q Consensus 12 vfis~~~~d~~~~~~~~l~~~L~~~--g~~~~~d~~~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~wc~~El~~~~ 89 (1103)
|||||++.|.+..|+++|..+|++. |+++|++++|+.+|..+.++|.++|++|+++|+|+|++|++|.||+.|+..++
T Consensus 1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~ 80 (141)
T PF01582_consen 1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL 80 (141)
T ss_dssp EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence 8999999444557999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCC--cEEEEEEeeeCCcccc-cccCchhhhhhhcccCCc-----hhHHHHHHHHH
Q 044579 90 DCKKMNA--QIVIPVFYQVDPSDVR-KQRGSFGEAFVNHDNNFP-----GKVQKWRHALT 141 (1103)
Q Consensus 90 ~~~~~~~--~~v~pif~~v~p~~vr-~~~g~~~~~~~~~~~~~~-----~~~~~w~~al~ 141 (1103)
++....+ ++|+|+||+|.+++++ .+.+.|+..+..+..-.. .+...|++++.
T Consensus 81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY 140 (141)
T ss_dssp HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred hhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence 9986654 8999999999999999 799999999888765433 36788988764
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.78 E-value=9.9e-19 Score=210.48 Aligned_cols=243 Identities=21% Similarity=0.216 Sum_probs=145.8
Q ss_pred ceEEEEEcCCCCCCCCCccccccccccccccccccccccccccCCcceEecCCCCCCCccCCCCCCCCCccEEEecCCCC
Q 044579 575 KLRYLHWHGYPLKTLPFDFELENLIELRLPYSKVEQIWEGKKEASKLKSIDLCHSQHLIRMPDLSEIPNLERTNFFNCTN 654 (1103)
Q Consensus 575 ~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~~~~ 654 (1103)
+|+.|.+.+|.++.+|.. +++|++|+|++|+++.+|.. .++|+.|+|++|.+ ..+|. ..++|+.|++++| .
T Consensus 223 ~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L-~~Lp~--lp~~L~~L~Ls~N-~ 293 (788)
T PRK15387 223 HITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPL-THLPA--LPSGLCKLWIFGN-Q 293 (788)
T ss_pred CCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc---ccccceeeccCCch-hhhhh--chhhcCEEECcCC-c
Confidence 344444444444444432 34444555555544444432 23444555554442 22222 1134445555543 2
Q ss_pred CCcccccccCCCcccEEEccCCCCCcccCCCCCCCCCcEEEccCCcCCCcCCCcCCCccEEecCCccceecCccccCCCC
Q 044579 655 LVLVPSSIQNFNNLSMLCFRGCESLRSFPRDIHFVSPVTIDFSFCVNLTEFPKISGKITELNLCDTAIEEVPSSVECLTN 734 (1103)
Q Consensus 655 l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~ 734 (1103)
+..+|.. +++|+.|++++| .+..+|.. ..+|+.|++++| .+..+|....+|+.|+|++|.++.+|.. .++
T Consensus 294 Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~l--p~~L~~L~Ls~N-~L~~LP~lp~~Lq~LdLS~N~Ls~LP~l---p~~ 363 (788)
T PRK15387 294 LTSLPVL---PPGLQELSVSDN-QLASLPAL--PSELCKLWAYNN-QLTSLPTLPSGLQELSVSDNQLASLPTL---PSE 363 (788)
T ss_pred ccccccc---ccccceeECCCC-ccccCCCC--cccccccccccC-ccccccccccccceEecCCCccCCCCCC---Ccc
Confidence 3333331 245555555553 33344431 224555555553 3455666566788888888888887763 356
Q ss_pred CCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCE
Q 044579 735 LKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQW 814 (1103)
Q Consensus 735 L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~ 814 (1103)
|+.|++++|.+. .+|.. ..+|+.|+|++|. +..+|.. .++|+.|++++|.+. .+|. .+.+|+.
T Consensus 364 L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~----Lt~LP~l---~s~L~~LdLS~N~Ls-sIP~-----l~~~L~~ 426 (788)
T PRK15387 364 LYKLWAYNNRLT-SLPAL---PSGLKELIVSGNR----LTSLPVL---PSELKELMVSGNRLT-SLPM-----LPSGLLS 426 (788)
T ss_pred cceehhhccccc-cCccc---ccccceEEecCCc----ccCCCCc---ccCCCEEEccCCcCC-CCCc-----chhhhhh
Confidence 777888887655 46643 3578888888864 2335543 357889999998854 4652 1357889
Q ss_pred EeCCCCCccccCccccCCCCCCEEeccCCcCCcccCccc
Q 044579 815 LDLSGNNFESLPSSIKQLSQLRKLDLSNCNMLLSLPELP 853 (1103)
Q Consensus 815 L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~l~~lp~~~ 853 (1103)
|++++|+|+.+|..+..+++|+.|+|++|++.+..|..+
T Consensus 427 L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 427 LSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred hhhccCcccccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 999999999999999999999999999999888766544
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.78 E-value=1.9e-18 Score=208.02 Aligned_cols=269 Identities=23% Similarity=0.279 Sum_probs=215.9
Q ss_pred ceEEEEEcCCCCCCCCCccccccccccccccccccccccccccCCcceEecCCCCCCCccCCCCCCCCCccEEEecCCCC
Q 044579 575 KLRYLHWHGYPLKTLPFDFELENLIELRLPYSKVEQIWEGKKEASKLKSIDLCHSQHLIRMPDLSEIPNLERTNFFNCTN 654 (1103)
Q Consensus 575 ~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~~~~ 654 (1103)
.-..|+++.+.++++|..+. .+|+.|++.+|+++.+|.. +++|++|+|++|++. .+|.+ .++|+.|++++|.
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~Lt-sLP~l--p~sL~~L~Ls~N~- 273 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLT-SLPVL--PPGLLELSIFSNP- 273 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccC-cccCc--ccccceeeccCCc-
Confidence 45678999999999998763 5899999999999999864 589999999999755 55643 5789999999975
Q ss_pred CCcccccccCCCcccEEEccCCCCCcccCCCCCCCCCcEEEccCCcCCCcCCCcCCCccEEecCCccceecCccccCCCC
Q 044579 655 LVLVPSSIQNFNNLSMLCFRGCESLRSFPRDIHFVSPVTIDFSFCVNLTEFPKISGKITELNLCDTAIEEVPSSVECLTN 734 (1103)
Q Consensus 655 l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~ 734 (1103)
+..+|.. ..+|+.|++++| .+..+|. ..++|+.|++++| .+..+|..+.+|+.|++++|.+..+|.. ..+
T Consensus 274 L~~Lp~l---p~~L~~L~Ls~N-~Lt~LP~--~p~~L~~LdLS~N-~L~~Lp~lp~~L~~L~Ls~N~L~~LP~l---p~~ 343 (788)
T PRK15387 274 LTHLPAL---PSGLCKLWIFGN-QLTSLPV--LPPGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTSLPTL---PSG 343 (788)
T ss_pred hhhhhhc---hhhcCEEECcCC-ccccccc--cccccceeECCCC-ccccCCCCcccccccccccCcccccccc---ccc
Confidence 5666653 357889999996 5777876 3578999999996 6778888888999999999999998863 358
Q ss_pred CCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCE
Q 044579 735 LKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQW 814 (1103)
Q Consensus 735 L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~ 814 (1103)
|+.|+|++|++. .+|.. ..+|+.|++++|. +..+|.. ..+|+.|+|++|.+. .+|. ..++|+.
T Consensus 344 Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~----L~~LP~l---~~~L~~LdLs~N~Lt-~LP~-----l~s~L~~ 406 (788)
T PRK15387 344 LQELSVSDNQLA-SLPTL---PSELYKLWAYNNR----LTSLPAL---PSGLKELIVSGNRLT-SLPV-----LPSELKE 406 (788)
T ss_pred cceEecCCCccC-CCCCC---Ccccceehhhccc----cccCccc---ccccceEEecCCccc-CCCC-----cccCCCE
Confidence 999999999766 46653 3578889999864 3336653 357999999999855 4652 2478999
Q ss_pred EeCCCCCccccCccccCCCCCCEEeccCCcCCcccCccccccccceecccccccccCCCCchhhhhhh
Q 044579 815 LDLSGNNFESLPSSIKQLSQLRKLDLSNCNMLLSLPELPLFLEDLEARNCKRLQFLPEIPSCLEELDA 882 (1103)
Q Consensus 815 L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~~~~c~~l~~~~~~p~~l~~L~~ 882 (1103)
|++++|.|+++|.. +.+|+.|++++|++. .+|..+..+..|...+..+|.+.+..|..+..+..
T Consensus 407 LdLS~N~LssIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l~s 470 (788)
T PRK15387 407 LMVSGNRLTSLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITS 470 (788)
T ss_pred EEccCCcCCCCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHHhc
Confidence 99999999999964 357889999999864 78988888999999999999999988887766643
No 18
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.75 E-value=2.9e-18 Score=168.33 Aligned_cols=135 Identities=41% Similarity=0.724 Sum_probs=114.3
Q ss_pred cccEEEcCcc-ccccCchHHHHHHHHHhCCCeEEeeCccccCCCcchHHHHHHHhhcceEEEEecCCccCchhhHHHHHH
Q 044579 9 KYEVFLSFRG-EDTRNGFTSHLAAALHRKQIQFFIDDEELKKGDEISPALSNAIESSDISIIIFSKGYASSRWCLNELVK 87 (1103)
Q Consensus 9 ~~dvfis~~~-~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~wc~~El~~ 87 (1103)
+|||||||++ +|.++.|+.+|..+|...|+.+|.|++. ..|... .+|.++|++|++.|+|+|++|+.|.||..|+..
T Consensus 1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~-~~~~~~-~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~ 78 (140)
T smart00255 1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFE-PGGGDL-EEIDEAIEKSRIAIVVLSPNYAESEWCLDELVA 78 (140)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcc-cccchH-HHHHHHHHHCcEEEEEECcccccChhHHHHHHH
Confidence 5999999999 5666789999999999999999999743 333333 399999999999999999999999999999999
Q ss_pred HHHhhhc-CCcEEEEEEeeeCCcccccccCchhhhhhhcccCCchhH--HHHHHHHHHhcc
Q 044579 88 ILDCKKM-NAQIVIPVFYQVDPSDVRKQRGSFGEAFVNHDNNFPGKV--QKWRHALTEASN 145 (1103)
Q Consensus 88 ~~~~~~~-~~~~v~pif~~v~p~~vr~~~g~~~~~~~~~~~~~~~~~--~~w~~al~~~~~ 145 (1103)
++++... ..++|+||+|+..|+++..+.+.+..++..+..++.+.. +.|+.++..+++
T Consensus 79 a~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~~fW~~~~~~l~~ 139 (140)
T smart00255 79 ALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKERFWKKALYAVPS 139 (140)
T ss_pred HHHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhHHHHHHHHHHhcc
Confidence 9987654 667999999999999999999999999988755555333 589998877653
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.69 E-value=9.6e-19 Score=202.79 Aligned_cols=314 Identities=25% Similarity=0.303 Sum_probs=232.7
Q ss_pred cccCCCCcceeechHhhhcCcccceEEEecCCCCCccccCcceecCCCcccCCCceEEEEEcCCCCCCCCCccccccccc
Q 044579 521 FLDLSKTKDIHLSSQAFANMSNLRLLKFYMPERGGVPIMSSKVHLDQGLEDLPEKLRYLHWHGYPLKTLPFDFELENLIE 600 (1103)
Q Consensus 521 ~L~l~~~~~~~~~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~ 600 (1103)
.+|+.+|... .-....+.+|+.|....|.+.. ..+ --.+|+.|..+.|++..+-..+.+.+|++
T Consensus 182 ~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~-------l~~------~g~~l~~L~a~~n~l~~~~~~p~p~nl~~ 245 (1081)
T KOG0618|consen 182 QLDLRYNEME---VLDLSNLANLEVLHCERNQLSE-------LEI------SGPSLTALYADHNPLTTLDVHPVPLNLQY 245 (1081)
T ss_pred eeecccchhh---hhhhhhccchhhhhhhhcccce-------EEe------cCcchheeeeccCcceeecccccccccee
Confidence 4667666554 2335667778888777765421 111 11378999999999997777778899999
Q ss_pred cccccccccccccccccCCcceEecCCCCCCCccCC-CCCCCCCccEEEecCCCCCCcccccccCCCcccEEEccCCCCC
Q 044579 601 LRLPYSKVEQIWEGKKEASKLKSIDLCHSQHLIRMP-DLSEIPNLERTNFFNCTNLVLVPSSIQNFNNLSMLCFRGCESL 679 (1103)
Q Consensus 601 L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~p-~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~~~~l 679 (1103)
+++++|+++.+|+.+..+.+|+.|+..+|.+ ..+| .+...++|+.|....| .+..+|+....++.|++|+|.. +.+
T Consensus 246 ~dis~n~l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~-N~L 322 (1081)
T KOG0618|consen 246 LDISHNNLSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQS-NNL 322 (1081)
T ss_pred eecchhhhhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehh-ccc
Confidence 9999999999998899999999999999987 4455 4888899999988885 6778888888999999999998 567
Q ss_pred cccCCCC---CCCCCcEEEccCCcCCCcCCCc----CCCccEEecCCccce-ecCccccCCCCCCEEecCCCccccccc-
Q 044579 680 RSFPRDI---HFVSPVTIDFSFCVNLTEFPKI----SGKITELNLCDTAIE-EVPSSVECLTNLKELYLSRCSTLNRLS- 750 (1103)
Q Consensus 680 ~~lp~~~---~l~~L~~L~l~~c~~l~~~~~~----~~~L~~L~L~~~~i~-~lp~~~~~l~~L~~L~L~~~~~~~~lp- 750 (1103)
.++|..+ -..+|..|+.+. ..+...|.. ...|+.|++.+|.++ ..-+-+.+..+|+.|+|++|.+ +.+|
T Consensus 323 ~~lp~~~l~v~~~~l~~ln~s~-n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL-~~fpa 400 (1081)
T KOG0618|consen 323 PSLPDNFLAVLNASLNTLNVSS-NKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRL-NSFPA 400 (1081)
T ss_pred cccchHHHhhhhHHHHHHhhhh-ccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccc-ccCCH
Confidence 7888754 222344444443 344455532 335889999999988 3334578899999999999875 4455
Q ss_pred ccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCcc--ccCcc
Q 044579 751 TSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFE--SLPSS 828 (1103)
Q Consensus 751 ~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~--~lp~~ 828 (1103)
..+.++..|++|+|||| .++.+|..+.++..|++|...+|.+ ..+| .+..++.|+.+|+|.|+++ .+|..
T Consensus 401 s~~~kle~LeeL~LSGN----kL~~Lp~tva~~~~L~tL~ahsN~l-~~fP---e~~~l~qL~~lDlS~N~L~~~~l~~~ 472 (1081)
T KOG0618|consen 401 SKLRKLEELEELNLSGN----KLTTLPDTVANLGRLHTLRAHSNQL-LSFP---ELAQLPQLKVLDLSCNNLSEVTLPEA 472 (1081)
T ss_pred HHHhchHHhHHHhcccc----hhhhhhHHHHhhhhhHHHhhcCCce-eech---hhhhcCcceEEecccchhhhhhhhhh
Confidence 44789999999999995 4555899999999999999988874 4554 4567899999999999998 45544
Q ss_pred ccCCCCCCEEeccCCcCCcccCccccccccceeccc
Q 044579 829 IKQLSQLRKLDLSNCNMLLSLPELPLFLEDLEARNC 864 (1103)
Q Consensus 829 i~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~~~~c 864 (1103)
... ++|++|||++|..+..--..+..++.+...+.
T Consensus 473 ~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i 507 (1081)
T KOG0618|consen 473 LPS-PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDI 507 (1081)
T ss_pred CCC-cccceeeccCCcccccchhhhHHhhhhhheec
Confidence 433 89999999999865444444444444444333
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.69 E-value=6.6e-17 Score=196.41 Aligned_cols=226 Identities=19% Similarity=0.258 Sum_probs=134.9
Q ss_pred CCceEEEEEcCCCCCCCCCccccccccccccccccccccccccccCCcceEecCCCCCCCccCCCCCCCCCccEEEecCC
Q 044579 573 PEKLRYLHWHGYPLKTLPFDFELENLIELRLPYSKVEQIWEGKKEASKLKSIDLCHSQHLIRMPDLSEIPNLERTNFFNC 652 (1103)
Q Consensus 573 ~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~~ 652 (1103)
|.+|+.|++++|.++.+|..+. .+|++|+|++|+++.+|..+. .+|+.|+|++|.+.
T Consensus 198 p~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~-------------------- 254 (754)
T PRK15370 198 PEQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRIT-------------------- 254 (754)
T ss_pred ccCCcEEEecCCCCCcCChhhc-cCCCEEECCCCccccCChhhh--ccccEEECcCCccC--------------------
Confidence 3456666666666666665442 356666666666655554432 34555555555533
Q ss_pred CCCCcccccccCCCcccEEEccCCCCCcccCCCCCCCCCcEEEccCCcCCCcCCCc-CCCccEEecCCccceecCccccC
Q 044579 653 TNLVLVPSSIQNFNNLSMLCFRGCESLRSFPRDIHFVSPVTIDFSFCVNLTEFPKI-SGKITELNLCDTAIEEVPSSVEC 731 (1103)
Q Consensus 653 ~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~~~~-~~~L~~L~L~~~~i~~lp~~~~~ 731 (1103)
.+|..+. ++|+.|++++| .+..+|..+. .+|+.|++++| .++.+|.. ..+|+.|++++|.+..+|..+.
T Consensus 255 ----~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~-~sL~~L~Ls~N-~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~- 324 (754)
T PRK15370 255 ----ELPERLP--SALQSLDLFHN-KISCLPENLP-EELRYLSVYDN-SIRTLPAHLPSGITHLNVQSNSLTALPETLP- 324 (754)
T ss_pred ----cCChhHh--CCCCEEECcCC-ccCccccccC-CCCcEEECCCC-ccccCcccchhhHHHHHhcCCccccCCcccc-
Confidence 3333322 24444444432 3334443321 24555555443 33444432 2357778888888877776543
Q ss_pred CCCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcccCCCCC
Q 044579 732 LTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSS 811 (1103)
Q Consensus 732 l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~ 811 (1103)
++|+.|++++|.+.+ +|..+. ++|+.|+|++|.. ..+|..+ .++|+.|+|++|.+. .+|.. + ..+
T Consensus 325 -~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L----~~LP~~l--p~~L~~LdLs~N~Lt-~LP~~--l--~~s 389 (754)
T PRK15370 325 -PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQI----TVLPETL--PPTITTLDVSRNALT-NLPEN--L--PAA 389 (754)
T ss_pred -ccceeccccCCcccc-CChhhc--CcccEEECCCCCC----CcCChhh--cCCcCEEECCCCcCC-CCCHh--H--HHH
Confidence 578888888886543 665553 6888888888742 2356544 367888888888754 55432 2 247
Q ss_pred CCEEeCCCCCccccCccc----cCCCCCCEEeccCCcCC
Q 044579 812 LQWLDLSGNNFESLPSSI----KQLSQLRKLDLSNCNML 846 (1103)
Q Consensus 812 L~~L~Ls~n~l~~lp~~i----~~l~~L~~L~L~~n~~l 846 (1103)
|+.|++++|+++.+|..+ ..++++..|+|.+|++.
T Consensus 390 L~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 390 LQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 888889999888877655 34578888999988865
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.64 E-value=2.8e-16 Score=190.94 Aligned_cols=244 Identities=18% Similarity=0.260 Sum_probs=147.9
Q ss_pred cccCCCCcceeechHhhhcCcccceEEEecCCCCCccccCcceecCCCcccCCCceEEEEEcCCCCCCCCCccccccccc
Q 044579 521 FLDLSKTKDIHLSSQAFANMSNLRLLKFYMPERGGVPIMSSKVHLDQGLEDLPEKLRYLHWHGYPLKTLPFDFELENLIE 600 (1103)
Q Consensus 521 ~L~l~~~~~~~~~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~ 600 (1103)
.|++++.....++.. + .++|+.|++++|.+. .+|..+ +.+|++|++++|.++.+|..+ +.+|+.
T Consensus 182 ~L~L~~~~LtsLP~~-I--p~~L~~L~Ls~N~Lt---------sLP~~l---~~nL~~L~Ls~N~LtsLP~~l-~~~L~~ 245 (754)
T PRK15370 182 ELRLKILGLTTIPAC-I--PEQITTLILDNNELK---------SLPENL---QGNIKTLYANSNQLTSIPATL-PDTIQE 245 (754)
T ss_pred EEEeCCCCcCcCCcc-c--ccCCcEEEecCCCCC---------cCChhh---ccCCCEEECCCCccccCChhh-hccccE
Confidence 355665555555432 2 257999999999664 344433 248999999999999999765 458999
Q ss_pred cccccccccccccccccCCcceEecCCCCCCCccCCC-CCCCCCccEEEecCCCCCCcccccccCCCcccEEEccCCCCC
Q 044579 601 LRLPYSKVEQIWEGKKEASKLKSIDLCHSQHLIRMPD-LSEIPNLERTNFFNCTNLVLVPSSIQNFNNLSMLCFRGCESL 679 (1103)
Q Consensus 601 L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~p~-l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~~~~l 679 (1103)
|+|++|++..+|..+. .+|+.|+|++|++. .+|. +. ++|+.|++++| .+..+|..+. ++|+.|++++| .+
T Consensus 246 L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~lp--~sL~~L~Ls~N-~L 316 (754)
T PRK15370 246 MELSINRITELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDN-SIRTLPAHLP--SGITHLNVQSN-SL 316 (754)
T ss_pred EECcCCccCcCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCC-ccccCcccch--hhHHHHHhcCC-cc
Confidence 9999999999987764 58999999988755 4554 32 47888888886 4455665443 36777777764 33
Q ss_pred cccCCCCCCCCCcEEEccCCcCCCcCCCcCCCccEEecCCccceecCccccCCCCCCEEecCCCcccccccccccCCCCC
Q 044579 680 RSFPRDIHFVSPVTIDFSFCVNLTEFPKISGKITELNLCDTAIEEVPSSVECLTNLKELYLSRCSTLNRLSTSICKLKSL 759 (1103)
Q Consensus 680 ~~lp~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L 759 (1103)
..+|..+ ..+|+.|++++|.++.+|..+. ++|+.|+|++|++. .+|..+ .++|
T Consensus 317 t~LP~~l----------------------~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L 369 (754)
T PRK15370 317 TALPETL----------------------PPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQIT-VLPETL--PPTI 369 (754)
T ss_pred ccCCccc----------------------cccceeccccCCccccCChhhc--CcccEEECCCCCCC-cCChhh--cCCc
Confidence 4444322 2245555555555555554442 45666666655443 344433 2456
Q ss_pred cEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCC--cccCCCCCCCEEeCCCCCcc
Q 044579 760 HELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHS--IDFCCLSSLQWLDLSGNNFE 823 (1103)
Q Consensus 760 ~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~--~~~~~l~~L~~L~Ls~n~l~ 823 (1103)
+.|+|++|.. ..+|..+. .+|+.|++++|++. .+|.. .....++++..|+|.+|.++
T Consensus 370 ~~LdLs~N~L----t~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 370 TTLDVSRNAL----TNLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CEEECCCCcC----CCCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 6666665432 22444332 24666666665543 34321 11223456666666666654
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.55 E-value=8.4e-17 Score=170.02 Aligned_cols=243 Identities=16% Similarity=0.145 Sum_probs=169.5
Q ss_pred ccccccCCCCcceeechHhhhcCcccceEEEecCCCCCccccCcceecCCCcccCCCceEEEEEcCCCCCCCCCcc--cc
Q 044579 518 EGIFLDLSKTKDIHLSSQAFANMSNLRLLKFYMPERGGVPIMSSKVHLDQGLEDLPEKLRYLHWHGYPLKTLPFDF--EL 595 (1103)
Q Consensus 518 ~~i~L~l~~~~~~~~~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~--~l 595 (1103)
+.+.+++..|.+..+++.+|+.+++||.|+|++|.+.. .-|+.|..++.-++.+..++|+|+++|... .+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~--------I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL 139 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISF--------IAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGL 139 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhh--------cChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhH
Confidence 34457788889999999999999999999999997642 335677777744555555559999999876 89
Q ss_pred ccccccccccccccccc-cccccCCcceEecCCCCCCCccCC-CCCCCCCccEEEecCCCCCC------------ccccc
Q 044579 596 ENLIELRLPYSKVEQIW-EGKKEASKLKSIDLCHSQHLIRMP-DLSEIPNLERTNFFNCTNLV------------LVPSS 661 (1103)
Q Consensus 596 ~~L~~L~L~~n~i~~l~-~~~~~l~~L~~L~L~~~~~~~~~p-~l~~l~~L~~L~L~~~~~l~------------~~~~~ 661 (1103)
..|+.|.+.-|++.-++ +.+..|++|..|.|.+|.+..... .|..+.+++++.+..|.... ..|..
T Consensus 140 ~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ie 219 (498)
T KOG4237|consen 140 SSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIE 219 (498)
T ss_pred HHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhh
Confidence 99999999999998665 558889999999999987544333 37788888888887765221 12222
Q ss_pred ccCCCcccEEEc-------------------------cCCCCCcccCCCC--CCCCCcEEEccCCcCCCcCC----CcCC
Q 044579 662 IQNFNNLSMLCF-------------------------RGCESLRSFPRDI--HFVSPVTIDFSFCVNLTEFP----KISG 710 (1103)
Q Consensus 662 i~~l~~L~~L~L-------------------------~~~~~l~~lp~~~--~l~~L~~L~l~~c~~l~~~~----~~~~ 710 (1103)
++......-..+ +.|......|..- .+++|++|+|+++. ++.+. +...
T Consensus 220 tsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~-i~~i~~~aFe~~a 298 (498)
T KOG4237|consen 220 TSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK-ITRIEDGAFEGAA 298 (498)
T ss_pred cccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc-cchhhhhhhcchh
Confidence 222221111111 1111111222111 57888888888753 43332 2345
Q ss_pred CccEEecCCccceecCc-cccCCCCCCEEecCCCcccccccccccCCCCCcEEeecCCCC
Q 044579 711 KITELNLCDTAIEEVPS-SVECLTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLS 769 (1103)
Q Consensus 711 ~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~ 769 (1103)
.+++|+|..|.++.+.. .|.++.+|+.|+|.+|+++..-|..|..+.+|.+|+|-.|+.
T Consensus 299 ~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 299 ELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred hhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 67888888888887755 367888888888888888888888888888888888876553
No 23
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=99.44 E-value=3.7e-14 Score=130.49 Aligned_cols=87 Identities=33% Similarity=0.607 Sum_probs=75.0
Q ss_pred EEEcCccccccCchHHHHHHHHHhCCCeEEeeCccccCCCcchHHHHHHHhhcceEEEEecCCccCchhhHHHHHHHHHh
Q 044579 12 VFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELKKGDEISPALSNAIESSDISIIIFSKGYASSRWCLNELVKILDC 91 (1103)
Q Consensus 12 vfis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~wc~~El~~~~~~ 91 (1103)
|||||+++|.. |+++|++.|++.|+++|.|. ++.+|+.+.+.|.++|++|+..|+++|++|..|.||..|+..+.+
T Consensus 1 VFIS~~~~D~~--~a~~l~~~L~~~g~~v~~d~-~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~- 76 (102)
T PF13676_consen 1 VFISYSSEDRE--FAERLAERLESAGIRVFLDR-DIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK- 76 (102)
T ss_dssp EEEEEEGGGCC--CHHHHHHHHHHTT--EE-GG-EE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC-
T ss_pred eEEEecCCcHH--HHHHHHHHHhhcCCEEEEEE-eCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH-
Confidence 89999999944 99999999999999999997 999999999999999999999999999999999999999988843
Q ss_pred hhcCCcEEEEEEee
Q 044579 92 KKMNAQIVIPVFYQ 105 (1103)
Q Consensus 92 ~~~~~~~v~pif~~ 105 (1103)
.++.|+||..+
T Consensus 77 ---~~~~iipv~~~ 87 (102)
T PF13676_consen 77 ---RGKPIIPVRLD 87 (102)
T ss_dssp ---TSESEEEEECS
T ss_pred ---CCCEEEEEEEC
Confidence 44579999844
No 24
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.44 E-value=2.3e-15 Score=141.21 Aligned_cols=93 Identities=28% Similarity=0.418 Sum_probs=55.9
Q ss_pred ecCccccCCCCCCEEecCCCccc-ccccccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCC
Q 044579 724 EVPSSVECLTNLKELYLSRCSTL-NRLSTSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPH 802 (1103)
Q Consensus 724 ~lp~~~~~l~~L~~L~L~~~~~~-~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~ 802 (1103)
.+|..|+.++.|+.|+|.+|++. ..+|..|..++.|+.|+|++| ....+|..+++
T Consensus 93 ~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dn----dfe~lp~dvg~-------------------- 148 (264)
T KOG0617|consen 93 ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN----DFEILPPDVGK-------------------- 148 (264)
T ss_pred cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCC----CcccCChhhhh--------------------
Confidence 34556666777777777766544 345666666666666666663 23334444444
Q ss_pred CcccCCCCCCCEEeCCCCCccccCccccCCCCCCEEeccCCcCC
Q 044579 803 SIDFCCLSSLQWLDLSGNNFESLPSSIKQLSQLRKLDLSNCNML 846 (1103)
Q Consensus 803 ~~~~~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~l 846 (1103)
+++|+.|.+.+|++-++|..++.|..|+.|.+.+|++.
T Consensus 149 ------lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 149 ------LTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred ------hcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceee
Confidence 45555555555566666666777777777777776643
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.44 E-value=3.8e-15 Score=157.70 Aligned_cols=132 Identities=15% Similarity=0.214 Sum_probs=104.6
Q ss_pred CcccCCCceEEEEEcCCCCCCCCCcc--cccccccccccccccccc-ccccccCCcceEecCCCCCCCccCCC--CCCCC
Q 044579 568 GLEDLPEKLRYLHWHGYPLKTLPFDF--ELENLIELRLPYSKVEQI-WEGKKEASKLKSIDLCHSQHLIRMPD--LSEIP 642 (1103)
Q Consensus 568 ~l~~l~~~Lr~L~l~~~~l~~lp~~~--~l~~L~~L~L~~n~i~~l-~~~~~~l~~L~~L~L~~~~~~~~~p~--l~~l~ 642 (1103)
....+|.+-..+.|..|.|++||... .+++|+.|||++|+|+.| |..|+.+..|-.|-+.+++.++.+|. |.++.
T Consensus 61 VP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~ 140 (498)
T KOG4237|consen 61 VPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLS 140 (498)
T ss_pred CcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHH
Confidence 33556778889999999999999765 799999999999999977 56789999998888888656777774 89999
Q ss_pred CccEEEecCCCCCCcccccccCCCcccEEEccCCCCCcccCCCC--CCCCCcEEEccCCc
Q 044579 643 NLERTNFFNCTNLVLVPSSIQNFNNLSMLCFRGCESLRSFPRDI--HFVSPVTIDFSFCV 700 (1103)
Q Consensus 643 ~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~--~l~~L~~L~l~~c~ 700 (1103)
.|+.|.+.-|.........+..|++|..|.+.+ +.+..++... .+.+++++.+..+.
T Consensus 141 slqrLllNan~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 141 SLQRLLLNANHINCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred HHHHHhcChhhhcchhHHHHHHhhhcchhcccc-hhhhhhccccccchhccchHhhhcCc
Confidence 999999988776666677888999999999988 4566666532 66677777665543
No 26
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.43 E-value=6.8e-15 Score=138.03 Aligned_cols=169 Identities=27% Similarity=0.313 Sum_probs=107.4
Q ss_pred CCCCccccccccccccccccccccccccccCCcceEecCCCCCCCccCCCCCCCCCccEEEecCCCCCCcccccccCCCc
Q 044579 588 TLPFDFELENLIELRLPYSKVEQIWEGKKEASKLKSIDLCHSQHLIRMPDLSEIPNLERTNFFNCTNLVLVPSSIQNFNN 667 (1103)
Q Consensus 588 ~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~ 667 (1103)
.+|..|.+.+...|-|++|+++.+|..+..+.+|+.|++++|++....+.++.+++|+.|++.- +.+..+|..++.++.
T Consensus 25 ~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~ 103 (264)
T KOG0617|consen 25 ELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPA 103 (264)
T ss_pred hcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecch-hhhhcCccccCCCch
Confidence 4455556666666667777777666666667777777776666544444566666666666653 345566677777777
Q ss_pred ccEEEccCCCCCc-ccCCCCCCCCCcEEEccCCcCCCcCCCcCCCccEEecCCccceecCccccCCCCCCEEecCCCccc
Q 044579 668 LSMLCFRGCESLR-SFPRDIHFVSPVTIDFSFCVNLTEFPKISGKITELNLCDTAIEEVPSSVECLTNLKELYLSRCSTL 746 (1103)
Q Consensus 668 L~~L~L~~~~~l~-~lp~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~ 746 (1103)
|+.|+|.+|+.-. .+|..+ -.+..|+.|+|++|.++-+|..++++++|+.|.+.+|.+
T Consensus 104 levldltynnl~e~~lpgnf--------------------f~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndl- 162 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNF--------------------FYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDL- 162 (264)
T ss_pred hhhhhccccccccccCCcch--------------------hHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCch-
Confidence 7777776654221 222211 011235567777788888888888888888888888754
Q ss_pred ccccccccCCCCCcEEeecCCCCCCccccCCccccC
Q 044579 747 NRLSTSICKLKSLHELILSDCLSLETITELPSSFAN 782 (1103)
Q Consensus 747 ~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~ 782 (1103)
-.+|..++.|+.|++|++.+|. +..+|+.+++
T Consensus 163 l~lpkeig~lt~lrelhiqgnr----l~vlppel~~ 194 (264)
T KOG0617|consen 163 LSLPKEIGDLTRLRELHIQGNR----LTVLPPELAN 194 (264)
T ss_pred hhCcHHHHHHHHHHHHhcccce----eeecChhhhh
Confidence 3567777777777777777753 3335554443
No 27
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.40 E-value=8e-12 Score=162.42 Aligned_cols=296 Identities=14% Similarity=0.161 Sum_probs=184.7
Q ss_pred CCCCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHH
Q 044579 176 SESTDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVR 255 (1103)
Q Consensus 176 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~ 255 (1103)
.+|.....+|-|++-++.+.. ....+++.|.|++|.||||++..+..+ ++.++|+. +.. ...+...+.
T Consensus 8 ~~p~~~~~~~~R~rl~~~l~~-----~~~~~~~~v~apaG~GKTtl~~~~~~~----~~~~~w~~-l~~--~d~~~~~f~ 75 (903)
T PRK04841 8 SRPVRLHNTVVRERLLAKLSG-----ANNYRLVLVTSPAGYGKTTLISQWAAG----KNNLGWYS-LDE--SDNQPERFA 75 (903)
T ss_pred CCCCCccccCcchHHHHHHhc-----ccCCCeEEEECCCCCCHHHHHHHHHHh----CCCeEEEe-cCc--ccCCHHHHH
Confidence 466677889999877766653 235789999999999999999998854 23678885 322 122333444
Q ss_pred HHHHHhhhCCCCc-----------cccccchH---HHHHhhc--CCceEEEEeCCCCC--H---hHHHHHhCCCCccCCC
Q 044579 256 DEVISQVLGENLK-----------IGTLIVPQ---NIKKRLQ--RVKVLIVLDDVNDE--F---TQLESLAGGVDRFSPG 314 (1103)
Q Consensus 256 ~~ll~~l~~~~~~-----------~~~~~~~~---~l~~~L~--~k~~LlVLDdv~~~--~---~~l~~l~~~~~~~~~g 314 (1103)
..++..+...... ........ .+...+. +.+++|||||+..- . +.+..+... ..++
T Consensus 76 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~---~~~~ 152 (903)
T PRK04841 76 SYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRH---QPEN 152 (903)
T ss_pred HHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHh---CCCC
Confidence 4444444211100 00011111 1222232 67899999999521 1 233333333 3467
Q ss_pred cEEEEEeCchhhHh--hc-CcceEEEcc----CCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhHHHHHHh
Q 044579 315 SRIVITTRDKQVLD--KC-GVSYIYKVK----RLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLALEVLGS 387 (1103)
Q Consensus 315 s~IIiTTR~~~v~~--~~-~~~~~~~l~----~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~lg~ 387 (1103)
.++|||||...... .. ......++. +|+.+|+.++|...... .. ..+.+.++++.++|+|+++..++.
T Consensus 153 ~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~-~~----~~~~~~~l~~~t~Gwp~~l~l~~~ 227 (903)
T PRK04841 153 LTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSS-PI----EAAESSRLCDDVEGWATALQLIAL 227 (903)
T ss_pred eEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCC-CC----CHHHHHHHHHHhCChHHHHHHHHH
Confidence 78999999853221 11 112345555 89999999999765421 11 224568899999999999999987
Q ss_pred hcCCCCHHHHHHHHHHhhhcCCcchhhHHHhh-hcCCCHHHHHHHhhhhccCCCCCHHHHHHHhcC---CCchHHHhhcc
Q 044579 388 SLYQKSKQQWKVKLQNLKLISEPNIYNVLKIS-YDDLNPEEKKIFLDIACFFKGEDADFVTRIQDD---PTSLDNIVDKS 463 (1103)
Q Consensus 388 ~L~~~~~~~w~~~l~~l~~~~~~~i~~~l~~s-y~~L~~~~k~~fl~~a~f~~~~~~~~~~~~~~~---~~~l~~L~~~s 463 (1103)
.+...... .......+...+...+.+.+.-. ++.||++.++++..+|++. .++.+....+.+. ...++.|.+.+
T Consensus 228 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~~~~~~~~L~~l~~~~ 305 (903)
T PRK04841 228 SARQNNSS-LHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTGEENGQMRLEELERQG 305 (903)
T ss_pred HHhhCCCc-hhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcCCCcHHHHHHHHHHCC
Confidence 76543210 01111222111234466554443 7999999999999999986 6666666666554 55788999999
Q ss_pred CeeE-cC--CCeEEechhHHHHHHHhhhccccC
Q 044579 464 LITI-SD--ENRLQMHDLLQEMGQTIVRQKSIS 493 (1103)
Q Consensus 464 Li~~-~~--~~~~~mHdlv~~~~~~i~~~e~~~ 493 (1103)
++.. .+ ...|.+|++++++.+.....+.+.
T Consensus 306 l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~~~~ 338 (903)
T PRK04841 306 LFIQRMDDSGEWFRYHPLFASFLRHRCQWELAQ 338 (903)
T ss_pred CeeEeecCCCCEEehhHHHHHHHHHHHHhcCch
Confidence 9653 22 237999999999999887554433
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.38 E-value=3.7e-14 Score=160.63 Aligned_cols=255 Identities=18% Similarity=0.109 Sum_probs=142.5
Q ss_pred EEEcCCCCC--CCCCcc-cccccccccccccccc-----ccccccccCCcceEecCCCCCCCccC-------CCCCCCCC
Q 044579 579 LHWHGYPLK--TLPFDF-ELENLIELRLPYSKVE-----QIWEGKKEASKLKSIDLCHSQHLIRM-------PDLSEIPN 643 (1103)
Q Consensus 579 L~l~~~~l~--~lp~~~-~l~~L~~L~L~~n~i~-----~l~~~~~~l~~L~~L~L~~~~~~~~~-------p~l~~l~~ 643 (1103)
|++.++.++ .++..+ .+.+|++|+++++.++ .++..+...++|++|+++++...... ..+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 455555554 233333 5666888888888773 45556667777888888777543100 11445666
Q ss_pred ccEEEecCCCCCCcccccccCCCc---ccEEEccCCCCCcccCCCCCCCCCcEEEccCCcCCCcCCCcCCCccEEecCCc
Q 044579 644 LERTNFFNCTNLVLVPSSIQNFNN---LSMLCFRGCESLRSFPRDIHFVSPVTIDFSFCVNLTEFPKISGKITELNLCDT 720 (1103)
Q Consensus 644 L~~L~L~~~~~l~~~~~~i~~l~~---L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~L~~~ 720 (1103)
|+.|++++|......+..+..+.+ |++|++++|.....-...+ ...++....+|+.|++++|
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l---------------~~~l~~~~~~L~~L~L~~n 147 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLL---------------AKGLKDLPPALEKLVLGRN 147 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHH---------------HHHHHhCCCCceEEEcCCC
Confidence 677777666554444433333333 6666666654221000000 0001111245666666666
Q ss_pred cce-----ecCccccCCCCCCEEecCCCcccc----cccccccCCCCCcEEeecCCCCCCc-cccCCccccCCCCCCeee
Q 044579 721 AIE-----EVPSSVECLTNLKELYLSRCSTLN----RLSTSICKLKSLHELILSDCLSLET-ITELPSSFANLEGLEKLV 790 (1103)
Q Consensus 721 ~i~-----~lp~~~~~l~~L~~L~L~~~~~~~----~lp~~l~~l~~L~~L~L~~~~~l~~-i~~lp~~~~~l~~L~~L~ 790 (1103)
.+. .++..+..+++|++|+|++|.+.+ .++..+..+++|+.|++++|..... ...++..+..+++|++|+
T Consensus 148 ~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ 227 (319)
T cd00116 148 RLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLN 227 (319)
T ss_pred cCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEe
Confidence 655 344456666778888888877653 2334455566888888887753211 122344556677888888
Q ss_pred ccCCCCCCCCCCCc---ccCCCCCCCEEeCCCCCcc-----ccCccccCCCCCCEEeccCCcCCcc
Q 044579 791 LVGCSKLNKLPHSI---DFCCLSSLQWLDLSGNNFE-----SLPSSIKQLSQLRKLDLSNCNMLLS 848 (1103)
Q Consensus 791 L~~~~~~~~lp~~~---~~~~l~~L~~L~Ls~n~l~-----~lp~~i~~l~~L~~L~L~~n~~l~~ 848 (1103)
+++|.+........ .....+.|+.|++++|.++ .+...+..+++|+.|++++|.+...
T Consensus 228 ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 228 LGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred cCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 88876543110000 0012367888888888775 3445556667888888888876543
No 29
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.37 E-value=4.6e-14 Score=159.92 Aligned_cols=249 Identities=21% Similarity=0.210 Sum_probs=161.6
Q ss_pred ceEEEEEcCCCCCC-----CCCcc-ccccccccccccccccc-------cccccccCCcceEecCCCCCCCccCCC-CCC
Q 044579 575 KLRYLHWHGYPLKT-----LPFDF-ELENLIELRLPYSKVEQ-------IWEGKKEASKLKSIDLCHSQHLIRMPD-LSE 640 (1103)
Q Consensus 575 ~Lr~L~l~~~~l~~-----lp~~~-~l~~L~~L~L~~n~i~~-------l~~~~~~l~~L~~L~L~~~~~~~~~p~-l~~ 640 (1103)
.|+.|+++++.+.. ++... ..++|++|+++++.+.. ++..+..+++|+.|+|++|.+....+. +..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 59999999998853 33333 56779999999887763 334567789999999999987644432 333
Q ss_pred C---CCccEEEecCCCCCC----cccccccCC-CcccEEEccCCCCCcc----cCCCC-CCCCCcEEEccCCcCCCcCCC
Q 044579 641 I---PNLERTNFFNCTNLV----LVPSSIQNF-NNLSMLCFRGCESLRS----FPRDI-HFVSPVTIDFSFCVNLTEFPK 707 (1103)
Q Consensus 641 l---~~L~~L~L~~~~~l~----~~~~~i~~l-~~L~~L~L~~~~~l~~----lp~~~-~l~~L~~L~l~~c~~l~~~~~ 707 (1103)
+ ++|++|++++|.... .+..++..+ ++|+.|++++|..... ++..+ .+.+|+
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~--------------- 168 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLK--------------- 168 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcC---------------
Confidence 3 559999999987542 233456667 8899999999864421 11111 233444
Q ss_pred cCCCccEEecCCccce-----ecCccccCCCCCCEEecCCCcccc----cccccccCCCCCcEEeecCCCCCCc-cccCC
Q 044579 708 ISGKITELNLCDTAIE-----EVPSSVECLTNLKELYLSRCSTLN----RLSTSICKLKSLHELILSDCLSLET-ITELP 777 (1103)
Q Consensus 708 ~~~~L~~L~L~~~~i~-----~lp~~~~~l~~L~~L~L~~~~~~~----~lp~~l~~l~~L~~L~L~~~~~l~~-i~~lp 777 (1103)
+|++++|.+. .++..+..+++|+.|+|++|.+.+ .++..+..+++|++|++++|..... +..+.
T Consensus 169 ------~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~ 242 (319)
T cd00116 169 ------ELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALA 242 (319)
T ss_pred ------EEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHH
Confidence 4555554444 344445566788888888887653 2344566788899999988753321 11111
Q ss_pred ccc-cCCCCCCeeeccCCCCCCC--CCCCcccCCCCCCCEEeCCCCCcccc-----CccccCC-CCCCEEeccCCc
Q 044579 778 SSF-ANLEGLEKLVLVGCSKLNK--LPHSIDFCCLSSLQWLDLSGNNFESL-----PSSIKQL-SQLRKLDLSNCN 844 (1103)
Q Consensus 778 ~~~-~~l~~L~~L~L~~~~~~~~--lp~~~~~~~l~~L~~L~Ls~n~l~~l-----p~~i~~l-~~L~~L~L~~n~ 844 (1103)
..+ ...+.|+.|++++|.+... .+....+..+++|+.|++++|.++.- ...+... +.|+.|++.+|+
T Consensus 243 ~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 243 SALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 111 1247899999999876521 10012234458899999999998833 3344455 789999998876
No 30
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.19 E-value=2.2e-09 Score=125.12 Aligned_cols=280 Identities=16% Similarity=0.139 Sum_probs=160.6
Q ss_pred CCCCCCCCccccchhHHHHHHhhccc--CCCeEEEEEeecCCChhHHHHHHHHHHHhccCC--ceEEEEechhhhcccCh
Q 044579 176 SESTDLDGLVGLNTRIEEMKSLLCLE--SHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQ--GKCFMANVREKANKMGV 251 (1103)
Q Consensus 176 ~~~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~--~~~~~~~~~~~~~~~~~ 251 (1103)
.+...++.++||+.++++|...+... ......+.|+|++|+|||++++.+++++..... ..+++. . ....+.
T Consensus 24 ~~~~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in-~---~~~~~~ 99 (394)
T PRK00411 24 EPDYVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYIN-C---QIDRTR 99 (394)
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEE-C---CcCCCH
Confidence 34456788999999999999888532 233456789999999999999999998766542 233443 2 222345
Q ss_pred HHHHHHHHHhhhCCCCccccc---cchHHHHHhhc--CCceEEEEeCCCCCH------hHHHHHhCCCCccCCCcE--EE
Q 044579 252 IHVRDEVISQVLGENLKIGTL---IVPQNIKKRLQ--RVKVLIVLDDVNDEF------TQLESLAGGVDRFSPGSR--IV 318 (1103)
Q Consensus 252 ~~~~~~ll~~l~~~~~~~~~~---~~~~~l~~~L~--~k~~LlVLDdv~~~~------~~l~~l~~~~~~~~~gs~--II 318 (1103)
..+...++.++.+........ .....+.+.+. +++++||||+++ .. +.+..+....... ++++ +|
T Consensus 100 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d-~l~~~~~~~~l~~l~~~~~~~-~~~~v~vI 177 (394)
T PRK00411 100 YAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDIN-YLFEKEGNDVLYSLLRAHEEY-PGARIGVI 177 (394)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHh-HhhccCCchHHHHHHHhhhcc-CCCeEEEE
Confidence 566777777776532111111 11124445553 456899999997 32 2344443322211 2333 56
Q ss_pred EEeCchhhHhhc-------CcceEEEccCCChhHHHHHHHHhhhcc---CCCChh-HHHHHHHHHHHhCCChhHHHHHHh
Q 044579 319 ITTRDKQVLDKC-------GVSYIYKVKRLEHDNALELFCRKAIRQ---NSRSQD-LLELSKEIVGYAKGNPLALEVLGS 387 (1103)
Q Consensus 319 iTTR~~~v~~~~-------~~~~~~~l~~L~~~ea~~Lf~~~a~~~---~~~~~~-~~~~~~~i~~~~~G~PLal~~lg~ 387 (1103)
.++.+..+.... -....+.+++++.++..+++..++-.. ....++ .+.+++......|..+.|+.++-.
T Consensus 178 ~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~ 257 (394)
T PRK00411 178 GISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRR 257 (394)
T ss_pred EEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 666655433221 112467899999999999998876321 122222 222233332224556677766543
Q ss_pred hc-----CC---CCHHHHHHHHHHhhhcCCcchhhHHHhhhcCCCHHHHHHHhhhhccCC----CCCHHHHH----HHh-
Q 044579 388 SL-----YQ---KSKQQWKVKLQNLKLISEPNIYNVLKISYDDLNPEEKKIFLDIACFFK----GEDADFVT----RIQ- 450 (1103)
Q Consensus 388 ~L-----~~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~----~~~~~~~~----~~~- 450 (1103)
+. .+ .+.+....+++... .....-.+..||.++|.++..++.... ......+. .+.
T Consensus 258 a~~~a~~~~~~~I~~~~v~~a~~~~~-------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~ 330 (394)
T PRK00411 258 AGLIAEREGSRKVTEEDVRKAYEKSE-------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCE 330 (394)
T ss_pred HHHHHHHcCCCCcCHHHHHHHHHHHH-------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Confidence 21 11 24556666655542 223445678999999998887764432 11221111 111
Q ss_pred --cC--------CCchHHHhhccCeeEc
Q 044579 451 --DD--------PTSLDNIVDKSLITIS 468 (1103)
Q Consensus 451 --~~--------~~~l~~L~~~sLi~~~ 468 (1103)
+. ..++..|.+.|+|...
T Consensus 331 ~~~~~~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 331 ELGYEPRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred HcCCCcCcHHHHHHHHHHHHhcCCeEEE
Confidence 11 3467788888888754
No 31
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.09 E-value=1.2e-08 Score=117.68 Aligned_cols=249 Identities=16% Similarity=0.193 Sum_probs=142.8
Q ss_pred CCCCCCCccccchhHHHHHHhhcc--cCCCeEEEEEeecCCChhHHHHHHHHHHHhccCC------ceEEEEechhhhcc
Q 044579 177 ESTDLDGLVGLNTRIEEMKSLLCL--ESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQ------GKCFMANVREKANK 248 (1103)
Q Consensus 177 ~~~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~------~~~~~~~~~~~~~~ 248 (1103)
+...++.++||++++++|...+.. .......+.|+|++|+|||++++++++.+....+ ..+++.. ...
T Consensus 10 ~~~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~----~~~ 85 (365)
T TIGR02928 10 PDYVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNC----QIL 85 (365)
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEEC----CCC
Confidence 445567899999999999988863 1233457899999999999999999987654322 2344432 222
Q ss_pred cChHHHHHHHHHhhhC--CCCcccccc---chHHHHHhh--cCCceEEEEeCCCCCH-----hHHHHHhCCC--Ccc-CC
Q 044579 249 MGVIHVRDEVISQVLG--ENLKIGTLI---VPQNIKKRL--QRVKVLIVLDDVNDEF-----TQLESLAGGV--DRF-SP 313 (1103)
Q Consensus 249 ~~~~~~~~~ll~~l~~--~~~~~~~~~---~~~~l~~~L--~~k~~LlVLDdv~~~~-----~~l~~l~~~~--~~~-~~ 313 (1103)
.+...+...++.++.+ ......... ....+.+.+ .+++++||||+++ .. +.+..+.... ... +.
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d-~L~~~~~~~L~~l~~~~~~~~~~~~ 164 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEID-YLVGDDDDLLYQLSRARSNGDLDNA 164 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchh-hhccCCcHHHHhHhccccccCCCCC
Confidence 3445667777777642 211111111 112344444 3567899999997 33 1133332221 111 12
Q ss_pred CcEEEEEeCchhhHhhc-------CcceEEEccCCChhHHHHHHHHhhh---ccCCCChhHHHHHHHHHHHhCCChh-HH
Q 044579 314 GSRIVITTRDKQVLDKC-------GVSYIYKVKRLEHDNALELFCRKAI---RQNSRSQDLLELSKEIVGYAKGNPL-AL 382 (1103)
Q Consensus 314 gs~IIiTTR~~~v~~~~-------~~~~~~~l~~L~~~ea~~Lf~~~a~---~~~~~~~~~~~~~~~i~~~~~G~PL-al 382 (1103)
...+|.+|.+....... -....+.+++++.+|..+++..++- ....-.++..+.+.+++....|.|- |+
T Consensus 165 ~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al 244 (365)
T TIGR02928 165 KVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAI 244 (365)
T ss_pred eEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHH
Confidence 33455555544332211 1124678999999999999998763 1222233334455667777778884 33
Q ss_pred HHHHhhc-----CC---CCHHHHHHHHHHhhhcCCcchhhHHHhhhcCCCHHHHHHHhhhhcc
Q 044579 383 EVLGSSL-----YQ---KSKQQWKVKLQNLKLISEPNIYNVLKISYDDLNPEEKKIFLDIACF 437 (1103)
Q Consensus 383 ~~lg~~L-----~~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f 437 (1103)
..+-... .+ .+.+....+.+.+. .....-++..||.+++.++..++..
T Consensus 245 ~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~-------~~~~~~~i~~l~~~~~~~l~ai~~~ 300 (365)
T TIGR02928 245 DLLRVAGEIAEREGAERVTEDHVEKAQEKIE-------KDRLLELIRGLPTHSKLVLLAIANL 300 (365)
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3322111 11 24455555544432 2233456678999998887776643
No 32
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.03 E-value=1.4e-10 Score=143.74 Aligned_cols=123 Identities=19% Similarity=0.253 Sum_probs=92.6
Q ss_pred ceEEEEEcCCCCCCCCCcccccccccccccccc--ccccccc-cccCCcceEecCCCCCCCccCCC-CCCCCCccEEEec
Q 044579 575 KLRYLHWHGYPLKTLPFDFELENLIELRLPYSK--VEQIWEG-KKEASKLKSIDLCHSQHLIRMPD-LSEIPNLERTNFF 650 (1103)
Q Consensus 575 ~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~--i~~l~~~-~~~l~~L~~L~L~~~~~~~~~p~-l~~l~~L~~L~L~ 650 (1103)
..|...+.+|.+..++.....++|++|-+..|. +..++.. +..++.|++|||++|.....+|. ++++-+|++|+++
T Consensus 524 ~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~ 603 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLS 603 (889)
T ss_pred heeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccccc
Confidence 567777777777777777766677777777775 5555543 67788888888888877777776 7778888888888
Q ss_pred CCCCCCcccccccCCCcccEEEccCCCCCcccCCCC-CCCCCcEEEccC
Q 044579 651 NCTNLVLVPSSIQNFNNLSMLCFRGCESLRSFPRDI-HFVSPVTIDFSF 698 (1103)
Q Consensus 651 ~~~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~l~~ 698 (1103)
+ +.+..+|.++++|++|.+||+..+..+..+|... .+.+|++|.+..
T Consensus 604 ~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 604 D-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred C-CCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 7 4567888888888888888888877777776555 477888777755
No 33
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.03 E-value=5.6e-09 Score=117.09 Aligned_cols=266 Identities=14% Similarity=0.173 Sum_probs=143.1
Q ss_pred CCccccchhHHHHHHhhccc---CCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHHHH
Q 044579 182 DGLVGLNTRIEEMKSLLCLE---SHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRDEV 258 (1103)
Q Consensus 182 ~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~l 258 (1103)
.+|||+++.+++|..++... ......+.++|++|+|||+||+.+++.+...+. +... ........ ....
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~----~~~~---~~~~~~~~-l~~~ 75 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK----ITSG---PALEKPGD-LAAI 75 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE----Eecc---chhcCchh-HHHH
Confidence 46999999999998888631 233456889999999999999999998754331 1110 00001111 1111
Q ss_pred HHhhhCCCC-cccc-----ccchHHHHHhhcCCceEEEEeCCCCCHhHHHHHhCCCCccCCCcEEEEEeCchhhHhhc--
Q 044579 259 ISQVLGENL-KIGT-----LIVPQNIKKRLQRVKVLIVLDDVNDEFTQLESLAGGVDRFSPGSRIVITTRDKQVLDKC-- 330 (1103)
Q Consensus 259 l~~l~~~~~-~~~~-----~~~~~~l~~~L~~k~~LlVLDdv~~~~~~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~~-- 330 (1103)
+..+..... -.++ ......+...+.+.+..+|+|+.. ...++.. ...+.+-|..|||...+....
T Consensus 76 l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~-~~~~~~~------~~~~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 76 LTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGP-SARSVRL------DLPPFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCc-cccceee------cCCCeEEEEecCCccccCHHHHh
Confidence 111110000 0000 000002222233333334444332 1111111 012345566677765443221
Q ss_pred CcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhHHHHHHhhcCCCCHHHHHHHH-HHhhhcCC
Q 044579 331 GVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLALEVLGSSLYQKSKQQWKVKL-QNLKLISE 409 (1103)
Q Consensus 331 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~lg~~L~~~~~~~w~~~l-~~l~~~~~ 409 (1103)
.....+++++++.++..+++.+.+...... -..+....|++.|+|.|-.+..++..+ |..+. ..-.....
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~~--~~~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a~~~~~~~it~ 219 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNVE--IEPEAALEIARRSRGTPRIANRLLRRV-------RDFAQVRGQKIINR 219 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCCC--cCHHHHHHHHHHhCCCcchHHHHHHHH-------HHHHHHcCCCCcCH
Confidence 223568999999999999999887533222 224567889999999997665554432 11100 00000000
Q ss_pred ---cchhhHHHhhhcCCCHHHHHHHh-hhhccCCC-CCHHHHHHHhcC-----CCchH-HHhhccCeeEcCCC
Q 044579 410 ---PNIYNVLKISYDDLNPEEKKIFL-DIACFFKG-EDADFVTRIQDD-----PTSLD-NIVDKSLITISDEN 471 (1103)
Q Consensus 410 ---~~i~~~l~~sy~~L~~~~k~~fl-~~a~f~~~-~~~~~~~~~~~~-----~~~l~-~L~~~sLi~~~~~~ 471 (1103)
......+...|.++++.++..+. .++.+..+ ...+.+...++. ...++ .|++++||.....+
T Consensus 220 ~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~~~g 292 (305)
T TIGR00635 220 DIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRTPRG 292 (305)
T ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcccCCch
Confidence 11222256678899999888776 44555432 455666666655 44466 69999999755433
No 34
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.03 E-value=1.7e-09 Score=116.34 Aligned_cols=195 Identities=20% Similarity=0.259 Sum_probs=97.8
Q ss_pred ccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHH------HHH
Q 044579 184 LVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHV------RDE 257 (1103)
Q Consensus 184 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~------~~~ 257 (1103)
|+||++++++|.+++..+ ..+.+.|+|+.|+|||+|++.+.+.....-..++|+........ ...... ...
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~-~~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNE-SSLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHH-HHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhh-hHHHHHHHHHHHHHH
Confidence 799999999999998743 34689999999999999999999987443334444432211110 011111 011
Q ss_pred H---HHhhhCC-CC-------ccccccchHHHHHhh--cCCceEEEEeCCCCCHh-----------HHHHHhCCCCccCC
Q 044579 258 V---ISQVLGE-NL-------KIGTLIVPQNIKKRL--QRVKVLIVLDDVNDEFT-----------QLESLAGGVDRFSP 313 (1103)
Q Consensus 258 l---l~~l~~~-~~-------~~~~~~~~~~l~~~L--~~k~~LlVLDdv~~~~~-----------~l~~l~~~~~~~~~ 313 (1103)
+ +...... .. ..........+.+.+ .+++++||+||++ ... .+..+....... .
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~-~~~~~~~~~~~~~~~l~~~~~~~~~~-~ 155 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQ-YLAIASEEDKDFLKSLRSLLDSLLSQ-Q 155 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGG-GGGBCTTTTHHHHHHHHHHHHH-----T
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHH-HHhhcccchHHHHHHHHHHHhhcccc-C
Confidence 1 1111111 10 000011112333333 2345999999996 322 122222221112 3
Q ss_pred CcEEEEEeCchhhHhh--------cCcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhHHHH
Q 044579 314 GSRIVITTRDKQVLDK--------CGVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLALEV 384 (1103)
Q Consensus 314 gs~IIiTTR~~~v~~~--------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 384 (1103)
...+|+++-...+... .+....+.+++|+.+++.+++...+-.. ..-+...+..++|+..+||+|..|..
T Consensus 156 ~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 156 NVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp TEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred CceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 3344444444433322 2333459999999999999998865332 11112345668999999999998864
No 35
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.98 E-value=3.9e-09 Score=119.05 Aligned_cols=255 Identities=15% Similarity=0.180 Sum_probs=146.0
Q ss_pred CCCCCCccccchhHHHHHHhhcc---cCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHH
Q 044579 178 STDLDGLVGLNTRIEEMKSLLCL---ESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHV 254 (1103)
Q Consensus 178 ~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~ 254 (1103)
|....+|||+++.++.+..++.. .....+.+.|+|++|+||||+|+.+++.+...+. +.. ..... . ...
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~---~~~-~~~~~---~-~~~ 92 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR---ITS-GPALE---K-PGD 92 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE---EEe-ccccc---C-hHH
Confidence 44667899999999999887763 2334567889999999999999999998754331 111 00000 0 011
Q ss_pred HHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCCCH-hHHHHHhCCCC-------------------ccCCC
Q 044579 255 RDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVNDEF-TQLESLAGGVD-------------------RFSPG 314 (1103)
Q Consensus 255 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~-~~l~~l~~~~~-------------------~~~~g 314 (1103)
...++..+ ++.-+|++|+++.-. ...+.+...+. ...+.
T Consensus 93 l~~~l~~l---------------------~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~ 151 (328)
T PRK00080 93 LAAILTNL---------------------EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPF 151 (328)
T ss_pred HHHHHHhc---------------------ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCc
Confidence 11111111 123355566664111 11111110000 01234
Q ss_pred cEEEEEeCchhhHhhc--CcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhHHHHHHhhcCCC
Q 044579 315 SRIVITTRDKQVLDKC--GVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLALEVLGSSLYQK 392 (1103)
Q Consensus 315 s~IIiTTR~~~v~~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~lg~~L~~~ 392 (1103)
+-|..|+|...+.... .....+++++++.++..+++...+...... -..+.+..|++.|+|.|-.+..+...+
T Consensus 152 ~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~--~~~~~~~~ia~~~~G~pR~a~~~l~~~--- 226 (328)
T PRK00080 152 TLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVE--IDEEGALEIARRSRGTPRIANRLLRRV--- 226 (328)
T ss_pred eEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHcCCCchHHHHHHHHH---
Confidence 5566677755443221 123568999999999999999887543322 233678899999999996555554432
Q ss_pred CHHHHHHHHHHhhhcCC---cchhhHHHhhhcCCCHHHHHHHh-hhhccCCC-CCHHHHHHHhcC-----CCchH-HHhh
Q 044579 393 SKQQWKVKLQNLKLISE---PNIYNVLKISYDDLNPEEKKIFL-DIACFFKG-EDADFVTRIQDD-----PTSLD-NIVD 461 (1103)
Q Consensus 393 ~~~~w~~~l~~l~~~~~---~~i~~~l~~sy~~L~~~~k~~fl-~~a~f~~~-~~~~~~~~~~~~-----~~~l~-~L~~ 461 (1103)
..|.... .-..... ....+.+...+.+|++..+..+. .+..|..+ ...+.+...+.. +..++ .|++
T Consensus 227 --~~~a~~~-~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~ 303 (328)
T PRK00080 227 --RDFAQVK-GDGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQ 303 (328)
T ss_pred --HHHHHHc-CCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHH
Confidence 1121110 0000111 11234456677889999888886 55555543 466677766665 33455 8999
Q ss_pred ccCeeEcC
Q 044579 462 KSLITISD 469 (1103)
Q Consensus 462 ~sLi~~~~ 469 (1103)
.+||+...
T Consensus 304 ~~li~~~~ 311 (328)
T PRK00080 304 QGFIQRTP 311 (328)
T ss_pred cCCcccCC
Confidence 99997553
No 36
>PF05729 NACHT: NACHT domain
Probab=98.97 E-value=5.1e-09 Score=105.99 Aligned_cols=143 Identities=18% Similarity=0.255 Sum_probs=85.3
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHhccCC-----ceEEEEechhhhcccChHHHHHHHHHhhhCCCCccccccchHHHHH
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQISRHFQ-----GKCFMANVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKK 280 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~-----~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~ 280 (1103)
|++.|+|.+|+||||+++.++.++..... ...++...+..........+...+..+.......... .....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~----~~~~~ 76 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEE----LLQEL 76 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHH----HHHHH
Confidence 57999999999999999999997765542 2333444444333322222333333332211111100 11111
Q ss_pred hhcCCceEEEEeCCCCCHhH------------HHHHhCCCCccCCCcEEEEEeCchhh---HhhcCcceEEEccCCChhH
Q 044579 281 RLQRVKVLIVLDDVNDEFTQ------------LESLAGGVDRFSPGSRIVITTRDKQV---LDKCGVSYIYKVKRLEHDN 345 (1103)
Q Consensus 281 ~L~~k~~LlVLDdv~~~~~~------------l~~l~~~~~~~~~gs~IIiTTR~~~v---~~~~~~~~~~~l~~L~~~e 345 (1103)
..+.+++++|+|++|+-... +..+... ...++.++|||+|.... .........+++.+|++++
T Consensus 77 ~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 77 LEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQ--ALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhh--ccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 22578999999999732111 1222221 12578999999998766 2233444689999999999
Q ss_pred HHHHHHHhh
Q 044579 346 ALELFCRKA 354 (1103)
Q Consensus 346 a~~Lf~~~a 354 (1103)
..+++.++.
T Consensus 155 ~~~~~~~~f 163 (166)
T PF05729_consen 155 IKQYLRKYF 163 (166)
T ss_pred HHHHHHHHh
Confidence 999997754
No 37
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.94 E-value=4.3e-08 Score=107.94 Aligned_cols=179 Identities=13% Similarity=0.109 Sum_probs=104.2
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHHHHHHhhhCCCCccccccchHHHHHh---
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKR--- 281 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~--- 281 (1103)
..++.|+|++|+||||+++.+++.....--..+++. ....+..++...+...+...............+.+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~-----~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLV-----NTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIE 117 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeee-----CCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHH
Confidence 458999999999999999999987653211122222 112344556666665543221111111111122222
Q ss_pred --hcCCceEEEEeCCCCC-HhHHHHHhC---CCCccCCCcEEEEEeCchhhHhhc----------CcceEEEccCCChhH
Q 044579 282 --LQRVKVLIVLDDVNDE-FTQLESLAG---GVDRFSPGSRIVITTRDKQVLDKC----------GVSYIYKVKRLEHDN 345 (1103)
Q Consensus 282 --L~~k~~LlVLDdv~~~-~~~l~~l~~---~~~~~~~gs~IIiTTR~~~v~~~~----------~~~~~~~l~~L~~~e 345 (1103)
..+++.++|+||++.- ...++.+.. ..........|++|.... ..... .....+++++++.+|
T Consensus 118 ~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 2677899999999732 223444322 111112233456665533 11111 123467899999999
Q ss_pred HHHHHHHhhhccCC--CChhHHHHHHHHHHHhCCChhHHHHHHhhc
Q 044579 346 ALELFCRKAIRQNS--RSQDLLELSKEIVGYAKGNPLALEVLGSSL 389 (1103)
Q Consensus 346 a~~Lf~~~a~~~~~--~~~~~~~~~~~i~~~~~G~PLal~~lg~~L 389 (1103)
..+++...+..... ...-..+..+.|++.++|.|..+..++..+
T Consensus 197 ~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 197 TREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99999877643221 112234788999999999999999988765
No 38
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.93 E-value=8.7e-09 Score=128.63 Aligned_cols=321 Identities=17% Similarity=0.232 Sum_probs=186.3
Q ss_pred CccccchhHHHHHHhhccc-CCCeEEEEEeecCCChhHHHHHHHHHHHhccCCce---------------EEEEechhhh
Q 044579 183 GLVGLNTRIEEMKSLLCLE-SHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGK---------------CFMANVREKA 246 (1103)
Q Consensus 183 ~~vGr~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~---------------~~~~~~~~~~ 246 (1103)
.++||+.+++.|...+... .....++.+.|..|||||+|+++|...+.+++... .|+..+++..
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~ 80 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLM 80 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHH
Confidence 3789999999998888743 33467999999999999999999999776552111 1111111111
Q ss_pred cc------cChHHHHHHHHHhhhCC-----------------CCccccc--cchH---------HHHHhh-cCCceEEEE
Q 044579 247 NK------MGVIHVRDEVISQVLGE-----------------NLKIGTL--IVPQ---------NIKKRL-QRVKVLIVL 291 (1103)
Q Consensus 247 ~~------~~~~~~~~~ll~~l~~~-----------------~~~~~~~--~~~~---------~l~~~L-~~k~~LlVL 291 (1103)
.. ........+++..+... ....... ...+ .+.... +.++.++|+
T Consensus 81 ~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~l 160 (849)
T COG3899 81 GQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVL 160 (849)
T ss_pred HHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEE
Confidence 10 00011111111111100 0000000 0000 122222 456999999
Q ss_pred eCC-CCCHhHH---HHHhCCCC---ccCCCcEEEEEeCch--hhHhhcCcceEEEccCCChhHHHHHHHHhhhccCCCCh
Q 044579 292 DDV-NDEFTQL---ESLAGGVD---RFSPGSRIVITTRDK--QVLDKCGVSYIYKVKRLEHDNALELFCRKAIRQNSRSQ 362 (1103)
Q Consensus 292 Ddv-~~~~~~l---~~l~~~~~---~~~~gs~IIiTTR~~--~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~ 362 (1103)
||+ |.+...+ +.+..... ......-.+.|.+.. .+.........+.+.+|+..+..++..........
T Consensus 161 eDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~--- 237 (849)
T COG3899 161 EDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKL--- 237 (849)
T ss_pred ecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccc---
Confidence 999 5443333 33333321 001122233333333 11222234468999999999999999877633222
Q ss_pred hHHHHHHHHHHHhCCChhHHHHHHhhcCCC-------CHHHHHHHHHHhhhcC-CcchhhHHHhhhcCCCHHHHHHHhhh
Q 044579 363 DLLELSKEIVGYAKGNPLALEVLGSSLYQK-------SKQQWKVKLQNLKLIS-EPNIYNVLKISYDDLNPEEKKIFLDI 434 (1103)
Q Consensus 363 ~~~~~~~~i~~~~~G~PLal~~lg~~L~~~-------~~~~w~~~l~~l~~~~-~~~i~~~l~~sy~~L~~~~k~~fl~~ 434 (1103)
...+....|+++..|+|+.+..+-..+... +...|..-...+.... .+.+.+.+....+.||...++++...
T Consensus 238 ~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~~A 317 (849)
T COG3899 238 LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLKAA 317 (849)
T ss_pred ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 223567899999999999999999888653 3345555444443322 12255568888999999999999999
Q ss_pred hccCCCCCHHHHHHHhcC------CCchHHHhhccCeeEcC--------CC---eEEechhHHHHHHHhhhccccCccee
Q 044579 435 ACFFKGEDADFVTRIQDD------PTSLDNIVDKSLITISD--------EN---RLQMHDLLQEMGQTIVRQKSISKRTR 497 (1103)
Q Consensus 435 a~f~~~~~~~~~~~~~~~------~~~l~~L~~~sLi~~~~--------~~---~~~mHdlv~~~~~~i~~~e~~~~~~r 497 (1103)
||+.+.++.+.+..+... ...++.| ..++|.+.. .. +-..||.+|+.+.....+. .|
T Consensus 318 A~iG~~F~l~~La~l~~~~~~~~a~~l~~al-~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~~~-----~r 391 (849)
T COG3899 318 ACIGNRFDLDTLAALAEDSPALEAAALLDAL-QEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIPES-----QR 391 (849)
T ss_pred HHhCccCCHHHHHHHHhhchHHHHHHHHHHh-HhhceeccccccccccccchhhHHhhHHHHHHHHhccCchh-----hH
Confidence 999999999988877764 2223333 344444321 11 2267999999887776544 23
Q ss_pred ecchhhHHHHhcccc
Q 044579 498 LWDHEDIYHVLKKNK 512 (1103)
Q Consensus 498 l~~~~~i~~vl~~~~ 512 (1103)
...|-.+...+..+.
T Consensus 392 q~~H~~i~~lL~~~~ 406 (849)
T COG3899 392 QYLHLRIGQLLEQNI 406 (849)
T ss_pred HHHHHHHHHHHHHhC
Confidence 334445555555443
No 39
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.91 E-value=2.2e-08 Score=117.74 Aligned_cols=294 Identities=15% Similarity=0.217 Sum_probs=184.4
Q ss_pred CCCCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHH
Q 044579 176 SESTDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVR 255 (1103)
Q Consensus 176 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~ 255 (1103)
.+|..+...|-|.+-+..+.. ..+.|.+.|..++|.|||||+.++.. ....-..+.|+..- ....+...+.
T Consensus 13 ~~P~~~~~~v~R~rL~~~L~~-----~~~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlsld---e~dndp~rF~ 83 (894)
T COG2909 13 VRPVRPDNYVVRPRLLDRLRR-----ANDYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSLD---ESDNDPARFL 83 (894)
T ss_pred CCCCCcccccccHHHHHHHhc-----CCCceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEeecC---CccCCHHHHH
Confidence 456667788888876666654 34689999999999999999999988 44455668888632 2234555666
Q ss_pred HHHHHhhhCCCCcccccc----------chH----HHHHhh--cCCceEEEEeCCCC--C---HhHHHHHhCCCCccCCC
Q 044579 256 DEVISQVLGENLKIGTLI----------VPQ----NIKKRL--QRVKVLIVLDDVND--E---FTQLESLAGGVDRFSPG 314 (1103)
Q Consensus 256 ~~ll~~l~~~~~~~~~~~----------~~~----~l~~~L--~~k~~LlVLDdv~~--~---~~~l~~l~~~~~~~~~g 314 (1103)
..++..+........+.. ... .+...+ ..++..+||||..- + ...++.+.... .++
T Consensus 84 ~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~---P~~ 160 (894)
T COG2909 84 SYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHA---PEN 160 (894)
T ss_pred HHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhC---CCC
Confidence 666665542221111100 011 222222 24689999999841 1 22355555553 478
Q ss_pred cEEEEEeCchhhHhhc--C-cceEEEcc----CCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhHHHHHHh
Q 044579 315 SRIVITTRDKQVLDKC--G-VSYIYKVK----RLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLALEVLGS 387 (1103)
Q Consensus 315 s~IIiTTR~~~v~~~~--~-~~~~~~l~----~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~lg~ 387 (1103)
-..|||||...-+... . .+...++. .|+.+|+.++|..... .+- ...-++.+.+..+|-+-|+..++=
T Consensus 161 l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~---l~L--d~~~~~~L~~~teGW~~al~L~aL 235 (894)
T COG2909 161 LTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGS---LPL--DAADLKALYDRTEGWAAALQLIAL 235 (894)
T ss_pred eEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCC---CCC--ChHHHHHHHhhcccHHHHHHHHHH
Confidence 8999999987543211 1 12233333 5899999999977541 111 124468899999999999999988
Q ss_pred hcCC-CCHHHHHHHHHHhhhcCCcchhh-HHHhhhcCCCHHHHHHHhhhhccCCCCCHHHHHHHh---cCCCchHHHhhc
Q 044579 388 SLYQ-KSKQQWKVKLQNLKLISEPNIYN-VLKISYDDLNPEEKKIFLDIACFFKGEDADFVTRIQ---DDPTSLDNIVDK 462 (1103)
Q Consensus 388 ~L~~-~~~~~w~~~l~~l~~~~~~~i~~-~l~~sy~~L~~~~k~~fl~~a~f~~~~~~~~~~~~~---~~~~~l~~L~~~ 462 (1103)
.+++ .+.+.-...+.. . ...|.+ ...--+|.||++.|..++.+|++.. +.-+....+. ++..-++.|..+
T Consensus 236 a~~~~~~~~q~~~~LsG---~-~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~-f~~eL~~~Ltg~~ng~amLe~L~~~ 310 (894)
T COG2909 236 ALRNNTSAEQSLRGLSG---A-ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSR-FNDELCNALTGEENGQAMLEELERR 310 (894)
T ss_pred HccCCCcHHHHhhhccc---h-HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH-hhHHHHHHHhcCCcHHHHHHHHHhC
Confidence 8773 333322221111 1 111222 2233468999999999999998843 2223333333 334558899999
Q ss_pred cCee--EcC-CCeEEechhHHHHHHHhhhccc
Q 044579 463 SLIT--ISD-ENRLQMHDLLQEMGQTIVRQKS 491 (1103)
Q Consensus 463 sLi~--~~~-~~~~~mHdlv~~~~~~i~~~e~ 491 (1103)
+|+- .++ ++.|+.|.+..++.+.....+.
T Consensus 311 gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~~ 342 (894)
T COG2909 311 GLFLQRLDDEGQWFRYHHLFAEFLRQRLQREL 342 (894)
T ss_pred CCceeeecCCCceeehhHHHHHHHHhhhcccc
Confidence 9875 332 5679999999999998887754
No 40
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=3.8e-10 Score=122.02 Aligned_cols=116 Identities=22% Similarity=0.278 Sum_probs=62.0
Q ss_pred cCCCCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCC-CCCCC---cc
Q 044579 730 ECLTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLN-KLPHS---ID 805 (1103)
Q Consensus 730 ~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~-~lp~~---~~ 805 (1103)
..+|+|+.|+|..|.....-......+..|++|+|++|..+.. .. -...+.|+.|..|+++.|.+.. .+|+. ..
T Consensus 219 ~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~-~~-~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~k 296 (505)
T KOG3207|consen 219 LTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDF-DQ-GYKVGTLPGLNQLNLSSTGIASIAEPDVESLDK 296 (505)
T ss_pred HhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccc-cc-ccccccccchhhhhccccCcchhcCCCccchhh
Confidence 4456666666666643332223334456666666666543322 00 1334566666666666665432 11111 01
Q ss_pred cCCCCCCCEEeCCCCCccccC--ccccCCCCCCEEeccCCcCCc
Q 044579 806 FCCLSSLQWLDLSGNNFESLP--SSIKQLSQLRKLDLSNCNMLL 847 (1103)
Q Consensus 806 ~~~l~~L~~L~Ls~n~l~~lp--~~i~~l~~L~~L~L~~n~~l~ 847 (1103)
...+++|+.|+++.|++..++ ..+..+++|+.|.+..|.+..
T Consensus 297 t~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 297 THTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred hcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 234677777777777776555 234556666776666666543
No 41
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.83 E-value=2.5e-10 Score=126.92 Aligned_cols=79 Identities=28% Similarity=0.439 Sum_probs=47.4
Q ss_pred ccEEecCCccceecCccccCCCCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeec
Q 044579 712 ITELNLCDTAIEEVPSSVECLTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVL 791 (1103)
Q Consensus 712 L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L 791 (1103)
|..|+.+.|.+..+|+.++.+.+|+.|++..|+.. .+|..++.| .|..||++.| .+..+|-.|.+|..|++|.|
T Consensus 168 l~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScN----kis~iPv~fr~m~~Lq~l~L 241 (722)
T KOG0532|consen 168 LAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCN----KISYLPVDFRKMRHLQVLQL 241 (722)
T ss_pred HHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccC----ceeecchhhhhhhhheeeee
Confidence 33445555566667777777777777777776543 445445533 3566666653 23446666666666666666
Q ss_pred cCCCC
Q 044579 792 VGCSK 796 (1103)
Q Consensus 792 ~~~~~ 796 (1103)
.+|++
T Consensus 242 enNPL 246 (722)
T KOG0532|consen 242 ENNPL 246 (722)
T ss_pred ccCCC
Confidence 66653
No 42
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.80 E-value=2.6e-08 Score=107.53 Aligned_cols=143 Identities=22% Similarity=0.383 Sum_probs=99.4
Q ss_pred CCcccEEEcCccccccCchHHHHHHHHHhCCCeEEeeCccccCCCcchHHHHHHHhhcceEEEEecCCccCc--------
Q 044579 7 QSKYEVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELKKGDEISPALSNAIESSDISIIIFSKGYASS-------- 78 (1103)
Q Consensus 7 ~~~~dvfis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s-------- 78 (1103)
..+.|||||||.. +.+..++-+.-.|+-+|++||+|.+.+..|..-+ .+.+.|..++.+|.|++||....
T Consensus 610 skq~DVFISYRRs-tGnQLASLiKV~LQL~GyrVFIDVdKL~AGKFds-sLlkni~aAkhFiLVLtP~sLDr~lnD~nCe 687 (832)
T KOG3678|consen 610 SKQIDVFISYRRS-TGNQLASLIKVLLQLRGYRVFIDVDKLYAGKFDS-SLLKNIQAAKHFILVLTPNSLDRLLNDDNCE 687 (832)
T ss_pred cCCcceEEEeecc-ccHHHHHHHHHHHHhcCceEEEehhhhhcccccH-HHHHHHHhhheeEEEeCcchHHHHhccccHH
Confidence 4678999999775 4456999999999999999999998999998655 88999999999999999998764
Q ss_pred hhhHHHHHHHHHhhhcCCcEEEEEEeeeCCcccccccCchhhhhhhcccCCchhHHHHHHHHHHhccCCCccCCCCcchH
Q 044579 79 RWCLNELVKILDCKKMNAQIVIPVFYQVDPSDVRKQRGSFGEAFVNHDNNFPGKVQKWRHALTEASNLSGYDSTESRNDA 158 (1103)
Q Consensus 79 ~wc~~El~~~~~~~~~~~~~v~pif~~v~p~~vr~~~g~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~~~e~ 158 (1103)
.|...|++.+++|. ..|+|||-. .|+ |+++-...-+-+..+....|.... ..++.
T Consensus 688 DWVHKEl~~Afe~~----KNIiPI~D~-----------aFE---------~Pt~ed~iPnDirmi~kyNGvKWv-HdYQd 742 (832)
T KOG3678|consen 688 DWVHKELKCAFEHQ----KNIIPIFDT-----------AFE---------FPTKEDQIPNDIRMITKYNGVKWV-HDYQD 742 (832)
T ss_pred HHHHHHHHHHHHhc----CCeeeeecc-----------ccc---------CCCchhcCcHHHHHHHhccCeeee-hhhHH
Confidence 45555555555554 459999832 111 111111111222334444553222 23556
Q ss_pred HHHHHHHHHHHHhcccCC
Q 044579 159 ELVEKIVEDISKKLEDMS 176 (1103)
Q Consensus 159 ~~i~~iv~~i~~~l~~~~ 176 (1103)
..+++||.-|...++..+
T Consensus 743 A~maKvvRFitGe~nRtt 760 (832)
T KOG3678|consen 743 ACMAKVVRFITGELNRTT 760 (832)
T ss_pred HHHHHHHHHHhccccCCC
Confidence 778889888888887733
No 43
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.78 E-value=1.6e-09 Score=111.12 Aligned_cols=199 Identities=24% Similarity=0.221 Sum_probs=131.8
Q ss_pred CCCCCCCccEEEecCCCCCCcccccccCCCcccEEEccCCCCCcccCCCCCCCCCcEEEccCC-----cCCCcCCCcCCC
Q 044579 637 DLSEIPNLERTNFFNCTNLVLVPSSIQNFNNLSMLCFRGCESLRSFPRDIHFVSPVTIDFSFC-----VNLTEFPKISGK 711 (1103)
Q Consensus 637 ~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c-----~~l~~~~~~~~~ 711 (1103)
+++.+.+|..+.++.|.-- .+-.-...-+.|+++...+ .-....|..+....+.-+....- +-...+ +....
T Consensus 209 ~l~~f~~l~~~~~s~~~~~-~i~~~~~~kptl~t~~v~~-s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~-dTWq~ 285 (490)
T KOG1259|consen 209 NLNAFRNLKTLKFSALSTE-NIVDIELLKPTLQTICVHN-TTIQDVPSLLPETILADPSGSEPSTSNGSALVSA-DTWQE 285 (490)
T ss_pred chHHhhhhheeeeeccchh-heeceeecCchhheeeeec-ccccccccccchhhhcCccCCCCCccCCceEEec-chHhh
Confidence 3566788888888887532 1211122335677777655 33333333222221111111000 000011 12235
Q ss_pred ccEEecCCccceecCccccCCCCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeec
Q 044579 712 ITELNLCDTAIEEVPSSVECLTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVL 791 (1103)
Q Consensus 712 L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L 791 (1103)
|++|+|++|.|+.+..++.-+|.++.|+++.|.+...- .+..|++|+.|+||+|. +..+-.+-..+-+.++|.|
T Consensus 286 LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~----Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 286 LTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNL----LAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhccccccchhhhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccch----hHhhhhhHhhhcCEeeeeh
Confidence 88999999999999999999999999999999876542 37889999999999964 3334444556788999999
Q ss_pred cCCCCCCCCCCCcccCCCCCCCEEeCCCCCccccC--ccccCCCCCCEEeccCCcCCcc
Q 044579 792 VGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESLP--SSIKQLSQLRKLDLSNCNMLLS 848 (1103)
Q Consensus 792 ~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~lp--~~i~~l~~L~~L~L~~n~~l~~ 848 (1103)
++|.+ +.+ ..++.+-+|..||+++|+|..+. ..|++||.|+.|.|.+|++.+.
T Consensus 360 a~N~i-E~L---SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 360 AQNKI-ETL---SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhhhH-hhh---hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 99863 333 34667889999999999998664 5789999999999999986543
No 44
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.76 E-value=8.5e-09 Score=120.34 Aligned_cols=170 Identities=24% Similarity=0.289 Sum_probs=97.7
Q ss_pred ceEEEEEcCCCCCCCCCccccc--cccccccccccccccccccccCCcceEecCCCCCCCccCCCCCCCCCccEEEecCC
Q 044579 575 KLRYLHWHGYPLKTLPFDFELE--NLIELRLPYSKVEQIWEGKKEASKLKSIDLCHSQHLIRMPDLSEIPNLERTNFFNC 652 (1103)
Q Consensus 575 ~Lr~L~l~~~~l~~lp~~~~l~--~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~~ 652 (1103)
.+..|++.++++..+|....+. +|++|++++|++..+|..+..+++|+.|++++|++....+..+.+++|+.|++++|
T Consensus 117 ~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N 196 (394)
T COG4886 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGN 196 (394)
T ss_pred ceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCC
Confidence 5777777777777777766443 77777777777777776677777777777777764333333336667777777663
Q ss_pred CCCCcccccccCCCcccEEEccCCCCCcccCCCCCCCCCcEEEccCCcCCCcCCCcCCCccEEecCCccceecCccccCC
Q 044579 653 TNLVLVPSSIQNFNNLSMLCFRGCESLRSFPRDIHFVSPVTIDFSFCVNLTEFPKISGKITELNLCDTAIEEVPSSVECL 732 (1103)
Q Consensus 653 ~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l 732 (1103)
.+..+|..+..+..|+.|.+++|..+..+...-.+ .++..|.+.+|.+..++..++.+
T Consensus 197 -~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~---------------------~~l~~l~l~~n~~~~~~~~~~~l 254 (394)
T COG4886 197 -KISDLPPEIELLSALEELDLSNNSIIELLSSLSNL---------------------KNLSGLELSNNKLEDLPESIGNL 254 (394)
T ss_pred -ccccCchhhhhhhhhhhhhhcCCcceecchhhhhc---------------------ccccccccCCceeeeccchhccc
Confidence 44555555555555666666654322111111111 22333444455555555555666
Q ss_pred CCCCEEecCCCcccccccccccCCCCCcEEeecCCC
Q 044579 733 TNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCL 768 (1103)
Q Consensus 733 ~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~ 768 (1103)
++|+.|++++|.+... +. ++.+.+|+.|+++++.
T Consensus 255 ~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 255 SNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNS 288 (394)
T ss_pred cccceecccccccccc-cc-ccccCccCEEeccCcc
Confidence 6666666666544332 22 5555666666665543
No 45
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.75 E-value=7.8e-10 Score=123.14 Aligned_cols=186 Identities=19% Similarity=0.238 Sum_probs=142.9
Q ss_pred EEEEEcCCCCCCCCCcc-ccccccccccccccccccccccccCCcceEecCCCCCCCccCCCCCCCCCccEEEecCCCCC
Q 044579 577 RYLHWHGYPLKTLPFDF-ELENLIELRLPYSKVEQIWEGKKEASKLKSIDLCHSQHLIRMPDLSEIPNLERTNFFNCTNL 655 (1103)
Q Consensus 577 r~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~~~~l 655 (1103)
...+++.|++..+|..+ .+..|+.|.|.+|.+..+|..+.++..|.+|||+.|++....+.+..|+ |+.|.+++ +.+
T Consensus 78 ~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN-Nkl 155 (722)
T KOG0532|consen 78 VFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN-NKL 155 (722)
T ss_pred hhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec-Ccc
Confidence 45678889999999887 6788999999999999999999999999999999998665555566665 88888887 567
Q ss_pred CcccccccCCCcccEEEccCCCCCcccCCCC-CCCCCcEEEccCCcCCCcCCCcCCC--ccEEecCCccceecCccccCC
Q 044579 656 VLVPSSIQNFNNLSMLCFRGCESLRSFPRDI-HFVSPVTIDFSFCVNLTEFPKISGK--ITELNLCDTAIEEVPSSVECL 732 (1103)
Q Consensus 656 ~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~l~~c~~l~~~~~~~~~--L~~L~L~~~~i~~lp~~~~~l 732 (1103)
+.+|..++.+..|..|+.+.| .+.++|..+ .+.+|+.|++..+ .+..+|+.+.. |..|++++|++..||-.|.+|
T Consensus 156 ~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrRn-~l~~lp~El~~LpLi~lDfScNkis~iPv~fr~m 233 (722)
T KOG0532|consen 156 TSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRRN-HLEDLPEELCSLPLIRLDFSCNKISYLPVDFRKM 233 (722)
T ss_pred ccCCcccccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhhh-hhhhCCHHHhCCceeeeecccCceeecchhhhhh
Confidence 888989998899999999885 455666655 7888888888773 45566655444 558888999999999999999
Q ss_pred CCCCEEecCCCcccccccccccC---CCCCcEEeecCC
Q 044579 733 TNLKELYLSRCSTLNRLSTSICK---LKSLHELILSDC 767 (1103)
Q Consensus 733 ~~L~~L~L~~~~~~~~lp~~l~~---l~~L~~L~L~~~ 767 (1103)
+.|++|-|.+|.+. ..|..++. ..=.++|+..-|
T Consensus 234 ~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 234 RHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 99999999888743 44544432 233456666665
No 46
>PRK06893 DNA replication initiation factor; Validated
Probab=98.74 E-value=1.5e-07 Score=100.07 Aligned_cols=178 Identities=15% Similarity=0.174 Sum_probs=102.0
Q ss_pred CCCCCCccccchhHHHHHHhhc-ccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHH
Q 044579 178 STDLDGLVGLNTRIEEMKSLLC-LESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRD 256 (1103)
Q Consensus 178 ~~~~~~~vGr~~~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~ 256 (1103)
+...++|+|-+... .+..+.. ......+.+.|||.+|+|||+||+++++....+...+.|+... . ......
T Consensus 12 ~~~fd~f~~~~~~~-~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~-~------~~~~~~ 83 (229)
T PRK06893 12 DETLDNFYADNNLL-LLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS-K------SQYFSP 83 (229)
T ss_pred cccccccccCChHH-HHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH-H------hhhhhH
Confidence 34456777554322 2221111 1122335789999999999999999999876666666776521 0 000000
Q ss_pred HHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCCC--HhHHH-HHhCCCCcc-CCCcEEEEE-eCc--------
Q 044579 257 EVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVNDE--FTQLE-SLAGGVDRF-SPGSRIVIT-TRD-------- 323 (1103)
Q Consensus 257 ~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~l~-~l~~~~~~~-~~gs~IIiT-TR~-------- 323 (1103)
.+.+.++ +.-+||+||++.. ..+|+ .+...++.. ..|.++||+ ++.
T Consensus 84 --------------------~~~~~~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~ 142 (229)
T PRK06893 84 --------------------AVLENLE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIK 142 (229)
T ss_pred --------------------HHHhhcc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHcccc
Confidence 1111122 2348999999731 22333 222222211 246666554 443
Q ss_pred -hhhHhhcCcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhHHHHHH
Q 044579 324 -KQVLDKCGVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLALEVLG 386 (1103)
Q Consensus 324 -~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~lg 386 (1103)
+.+...+.....+++++++.++.++++.+.+....... .++...-|++++.|..-++..+-
T Consensus 143 ~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l--~~~v~~~L~~~~~~d~r~l~~~l 204 (229)
T PRK06893 143 LPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIEL--SDEVANFLLKRLDRDMHTLFDAL 204 (229)
T ss_pred chhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHhccCCHHHHHHHH
Confidence 24444445566889999999999999999887543322 23566778888777665554443
No 47
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.72 E-value=9.3e-08 Score=103.61 Aligned_cols=171 Identities=22% Similarity=0.345 Sum_probs=104.6
Q ss_pred CCCccccchhH---HHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHHH
Q 044579 181 LDGLVGLNTRI---EEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRDE 257 (1103)
Q Consensus 181 ~~~~vGr~~~~---~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ 257 (1103)
.+++||.+.-+ .-|..++. .+.+..+.+||++|+||||||+.++......|...--+ ..++.++. +
T Consensus 23 lde~vGQ~HLlg~~~~lrr~v~--~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv--------~~gvkdlr-~ 91 (436)
T COG2256 23 LDEVVGQEHLLGEGKPLRRAVE--AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV--------TSGVKDLR-E 91 (436)
T ss_pred HHHhcChHhhhCCCchHHHHHh--cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc--------cccHHHHH-H
Confidence 34455554433 22333332 34567788999999999999999999877776532111 12222222 2
Q ss_pred HHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCC-CHhHHHHHhCCCCccCCCcEEEE--EeCchhhH---hhcC
Q 044579 258 VISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVND-EFTQLESLAGGVDRFSPGSRIVI--TTRDKQVL---DKCG 331 (1103)
Q Consensus 258 ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~-~~~~l~~l~~~~~~~~~gs~IIi--TTR~~~v~---~~~~ 331 (1103)
++.+ .-+.+..+++++|++|.|.. +..|.+.|++.. ..|.-|+| ||.++... .-..
T Consensus 92 i~e~---------------a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPsF~ln~ALlS 153 (436)
T COG2256 92 IIEE---------------ARKNRLLGRRTILFLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPSFELNPALLS 153 (436)
T ss_pred HHHH---------------HHHHHhcCCceEEEEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCCeeecHHHhh
Confidence 2211 11233458899999999953 566777777764 46777777 66665321 1113
Q ss_pred cceEEEccCCChhHHHHHHHHhhhccCCCCh-----hHHHHHHHHHHHhCCChh
Q 044579 332 VSYIYKVKRLEHDNALELFCRKAIRQNSRSQ-----DLLELSKEIVGYAKGNPL 380 (1103)
Q Consensus 332 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~-----~~~~~~~~i~~~~~G~PL 380 (1103)
...++++++|+.++-.+++.+.+......-. -.++....+++.++|---
T Consensus 154 R~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 154 RARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred hhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHH
Confidence 4579999999999999999884422211111 123456677888888653
No 48
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.70 E-value=1.3e-08 Score=118.71 Aligned_cols=184 Identities=24% Similarity=0.325 Sum_probs=140.2
Q ss_pred hhhcCcccceEEEecCCCCCccccCcceecCCCcccCCCceEEEEEcCCCCCCCCCcc-ccccccccccccccccccccc
Q 044579 536 AFANMSNLRLLKFYMPERGGVPIMSSKVHLDQGLEDLPEKLRYLHWHGYPLKTLPFDF-ELENLIELRLPYSKVEQIWEG 614 (1103)
Q Consensus 536 ~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~i~~l~~~ 614 (1103)
.....++++.|++.+|.+.. ++.....+..+|+.|++++|.+..+|... .+++|+.|++++|++..++..
T Consensus 111 ~~~~~~~l~~L~l~~n~i~~---------i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~ 181 (394)
T COG4886 111 ELLELTNLTSLDLDNNNITD---------IPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKL 181 (394)
T ss_pred hhhcccceeEEecCCccccc---------CccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhh
Confidence 44556889999998886543 33333222138999999999999998554 899999999999999999988
Q ss_pred cccCCcceEecCCCCCCCccCCC-CCCCCCccEEEecCCCCCCcccccccCCCcccEEEccCCCCCcccCCCCCCCCCcE
Q 044579 615 KKEASKLKSIDLCHSQHLIRMPD-LSEIPNLERTNFFNCTNLVLVPSSIQNFNNLSMLCFRGCESLRSFPRDIHFVSPVT 693 (1103)
Q Consensus 615 ~~~l~~L~~L~L~~~~~~~~~p~-l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~ 693 (1103)
...+++|+.|++++|++ ..+|. ......|++|.+.+|. ....+..+.++.++..|.+.++. +..++.
T Consensus 182 ~~~~~~L~~L~ls~N~i-~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~--------- 249 (394)
T COG4886 182 LSNLSNLNNLDLSGNKI-SDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNK-LEDLPE--------- 249 (394)
T ss_pred hhhhhhhhheeccCCcc-ccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCce-eeeccc---------
Confidence 87899999999999985 45555 4566779999999975 45556678888999888866643 222221
Q ss_pred EEccCCcCCCcCCCcCCCccEEecCCccceecCccccCCCCCCEEecCCCccccccccc
Q 044579 694 IDFSFCVNLTEFPKISGKITELNLCDTAIEEVPSSVECLTNLKELYLSRCSTLNRLSTS 752 (1103)
Q Consensus 694 L~l~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~ 752 (1103)
....+.++++|++++|.+..++. ++.+.+|+.|+++++.....+|..
T Consensus 250 -----------~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 250 -----------SIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred -----------hhccccccceecccccccccccc-ccccCccCEEeccCccccccchhh
Confidence 11223357788888889998888 899999999999999887776654
No 49
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.66 E-value=6.1e-09 Score=106.94 Aligned_cols=126 Identities=23% Similarity=0.277 Sum_probs=70.8
Q ss_pred hcCcccceEEEecCCCCCccccCcceecCCCcccCCCceEEEEEcCCCCCCCCCcc------------------------
Q 044579 538 ANMSNLRLLKFYMPERGGVPIMSSKVHLDQGLEDLPEKLRYLHWHGYPLKTLPFDF------------------------ 593 (1103)
Q Consensus 538 ~~l~~Lr~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~------------------------ 593 (1103)
.-+++|+.+.++.+... ++ .++..+.+.|.++..+...++..|...
T Consensus 211 ~~f~~l~~~~~s~~~~~---------~i-~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~ 280 (490)
T KOG1259|consen 211 NAFRNLKTLKFSALSTE---------NI-VDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSA 280 (490)
T ss_pred HHhhhhheeeeeccchh---------he-eceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEec
Confidence 34456677777765332 11 133333446777777776655444221
Q ss_pred -ccccccccccccccccccccccccCCcceEecCCCCCCCccCCCCCCCCCccEEEecCCCCCCcccccccCCCcccEEE
Q 044579 594 -ELENLIELRLPYSKVEQIWEGKKEASKLKSIDLCHSQHLIRMPDLSEIPNLERTNFFNCTNLVLVPSSIQNFNNLSMLC 672 (1103)
Q Consensus 594 -~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~ 672 (1103)
.-+.|++|||++|.|+.+-++.+-+++++.|++|+|.+. .+.++..+++|++|+|++|. +..+..+-.+|.+.++|+
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~-~v~nLa~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIR-TVQNLAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLK 358 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEecccccee-eehhhhhcccceEeecccch-hHhhhhhHhhhcCEeeee
Confidence 134577777777777777777777777777777777633 33345556666666666642 333333333344444444
Q ss_pred ccC
Q 044579 673 FRG 675 (1103)
Q Consensus 673 L~~ 675 (1103)
|++
T Consensus 359 La~ 361 (490)
T KOG1259|consen 359 LAQ 361 (490)
T ss_pred hhh
Confidence 444
No 50
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.64 E-value=2.3e-08 Score=99.75 Aligned_cols=65 Identities=26% Similarity=0.225 Sum_probs=19.6
Q ss_pred ccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCccccC--ccccCCCCCCEEeccCCcCC
Q 044579 780 FANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESLP--SSIKQLSQLRKLDLSNCNML 846 (1103)
Q Consensus 780 ~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~lp--~~i~~l~~L~~L~L~~n~~l 846 (1103)
+..+++|++|++++|.+.. ++ ......+++|++|+|++|+|..+. ..+..+++|+.|+|.+|+..
T Consensus 60 l~~L~~L~~L~L~~N~I~~-i~-~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 60 LPGLPRLKTLDLSNNRISS-IS-EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp ----TT--EEE--SS---S--C-HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred ccChhhhhhcccCCCCCCc-cc-cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 3345555555555555332 21 000123556666666666555433 23455666666666666654
No 51
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.64 E-value=1.2e-08 Score=111.39 Aligned_cols=277 Identities=22% Similarity=0.291 Sum_probs=179.5
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHHHHHHhhhCCCCccccccchHHHHHhhc
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQ 283 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 283 (1103)
..|.+.++|.|||||||++-.+.. ++..|...+++.+.+...+..-+. -++....+-....++ .....+..+..
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~~~v~----~~~ag~~gl~~~~g~-~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDPALVF----PTLAGALGLHVQPGD-SAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCchhHhH----HHHHhhcccccccch-HHHHHHHHHHh
Confidence 457899999999999999999999 888898888777665544432222 222221211111111 11125667778
Q ss_pred CCceEEEEeCCCCCHhHHHHHhCCCCccCCCcEEEEEeCchhhHhhcCcceEEEccCCChh-HHHHHHHHhhhccCC---
Q 044579 284 RVKVLIVLDDVNDEFTQLESLAGGVDRFSPGSRIVITTRDKQVLDKCGVSYIYKVKRLEHD-NALELFCRKAIRQNS--- 359 (1103)
Q Consensus 284 ~k~~LlVLDdv~~~~~~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~~l~~L~~~-ea~~Lf~~~a~~~~~--- 359 (1103)
+++.++|+||-..-.++-..+...+....+.-+|+.|+|..... ..+..+.++.|+.. ++.++|...+..-..
T Consensus 87 ~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~ 163 (414)
T COG3903 87 DRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSFW 163 (414)
T ss_pred hhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhcccee
Confidence 89999999998622333333433333335666889999976432 34567788888765 788998877632111
Q ss_pred CChhHHHHHHHHHHHhCCChhHHHHHHhhcCCCCHHHHHHHHHH----hhhc------CCcchhhHHHhhhcCCCHHHHH
Q 044579 360 RSQDLLELSKEIVGYAKGNPLALEVLGSSLYQKSKQQWKVKLQN----LKLI------SEPNIYNVLKISYDDLNPEEKK 429 (1103)
Q Consensus 360 ~~~~~~~~~~~i~~~~~G~PLal~~lg~~L~~~~~~~w~~~l~~----l~~~------~~~~i~~~l~~sy~~L~~~~k~ 429 (1103)
-..........|.+..+|.|++|...++..+.....+-...+.. ++.. ........+..||.-|...++-
T Consensus 164 l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~~ 243 (414)
T COG3903 164 LTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWERA 243 (414)
T ss_pred ecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHHH
Confidence 12233456789999999999999999998887666554443332 2221 1234677899999999999999
Q ss_pred HHhhhhccCCCCCHHHHHHHhcC----------CCchHHHhhccCeeEcC---CCeEEechhHHHHHHHhhhc
Q 044579 430 IFLDIACFFKGEDADFVTRIQDD----------PTSLDNIVDKSLITISD---ENRLQMHDLLQEMGQTIVRQ 489 (1103)
Q Consensus 430 ~fl~~a~f~~~~~~~~~~~~~~~----------~~~l~~L~~~sLi~~~~---~~~~~mHdlv~~~~~~i~~~ 489 (1103)
.|..++.|...+..+........ ...+..+++++++...+ .-+|+.-+-.+.|+.+...+
T Consensus 244 ~~~rLa~~~g~f~~~l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~r 316 (414)
T COG3903 244 LFGRLAVFVGGFDLGLALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELHR 316 (414)
T ss_pred HhcchhhhhhhhcccHHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 99999999888887644433222 23456678888876543 22355555556665555543
No 52
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=6.7e-09 Score=112.62 Aligned_cols=105 Identities=16% Similarity=0.114 Sum_probs=59.7
Q ss_pred ceEEEEEcCCCCCCCCCcc----ccccccccccccccccccccc--cccCCcceEecCCCCCCCccCC--CCCCCCCccE
Q 044579 575 KLRYLHWHGYPLKTLPFDF----ELENLIELRLPYSKVEQIWEG--KKEASKLKSIDLCHSQHLIRMP--DLSEIPNLER 646 (1103)
Q Consensus 575 ~Lr~L~l~~~~l~~lp~~~----~l~~L~~L~L~~n~i~~l~~~--~~~l~~L~~L~L~~~~~~~~~p--~l~~l~~L~~ 646 (1103)
+++.|++++|-+..+-... .+++|+.|+|+.|++...+.. ...+++|+.|.|+.|.+...-- -+..+|+|+.
T Consensus 147 ~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~ 226 (505)
T KOG3207|consen 147 NVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEV 226 (505)
T ss_pred cceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHH
Confidence 4555555555444332221 566777777777766655433 2356677777777776541111 1445677777
Q ss_pred EEecCCCCCCcccccccCCCcccEEEccCCCCC
Q 044579 647 TNFFNCTNLVLVPSSIQNFNNLSMLCFRGCESL 679 (1103)
Q Consensus 647 L~L~~~~~l~~~~~~i~~l~~L~~L~L~~~~~l 679 (1103)
|+|.+|..+..-..+...+..|+.|+|++|+.+
T Consensus 227 L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li 259 (505)
T KOG3207|consen 227 LYLEANEIILIKATSTKILQTLQELDLSNNNLI 259 (505)
T ss_pred hhhhcccccceecchhhhhhHHhhccccCCccc
Confidence 777776544333344555667777777775443
No 53
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.58 E-value=3.5e-08 Score=98.43 Aligned_cols=90 Identities=20% Similarity=0.290 Sum_probs=22.4
Q ss_pred CCCCCCCCccccccccccccccccccccccccc-cCCcceEecCCCCCCCccCCCCCCCCCccEEEecCCCCCCcccccc
Q 044579 584 YPLKTLPFDFELENLIELRLPYSKVEQIWEGKK-EASKLKSIDLCHSQHLIRMPDLSEIPNLERTNFFNCTNLVLVPSSI 662 (1103)
Q Consensus 584 ~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~-~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i 662 (1103)
+.+...|...++.++++|+|++|.|+.+. .+. .+.+|+.|+|++|. +..++.+..+++|++|++++|. +..++..+
T Consensus 7 ~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~-I~~l~~l~~L~~L~~L~L~~N~-I~~i~~~l 83 (175)
T PF14580_consen 7 NMIEQIAQYNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQ-ITKLEGLPGLPRLKTLDLSNNR-ISSISEGL 83 (175)
T ss_dssp ------------------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS----S-CHHH
T ss_pred ccccccccccccccccccccccccccccc-chhhhhcCCCEEECCCCC-CccccCccChhhhhhcccCCCC-CCccccch
Confidence 34455555556667777888888777763 344 56778888888877 3455667777777777777754 33443333
Q ss_pred -cCCCcccEEEccCC
Q 044579 663 -QNFNNLSMLCFRGC 676 (1103)
Q Consensus 663 -~~l~~L~~L~L~~~ 676 (1103)
..+++|+.|++++|
T Consensus 84 ~~~lp~L~~L~L~~N 98 (175)
T PF14580_consen 84 DKNLPNLQELYLSNN 98 (175)
T ss_dssp HHH-TT--EEE-TTS
T ss_pred HHhCCcCCEEECcCC
Confidence 35677777777664
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.57 E-value=1.5e-07 Score=104.94 Aligned_cols=31 Identities=23% Similarity=0.446 Sum_probs=17.0
Q ss_pred CCCCEEeccCCcCCcccCccccccccceecc
Q 044579 833 SQLRKLDLSNCNMLLSLPELPLFLEDLEARN 863 (1103)
Q Consensus 833 ~~L~~L~L~~n~~l~~lp~~~~~L~~L~~~~ 863 (1103)
++|+.|++++|..+...+.+|.+|+.|.+.+
T Consensus 156 sSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~ 186 (426)
T PRK15386 156 PSLKTLSLTGCSNIILPEKLPESLQSITLHI 186 (426)
T ss_pred CcccEEEecCCCcccCcccccccCcEEEecc
Confidence 4566666666665433333555666666543
No 55
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.57 E-value=9.5e-07 Score=104.92 Aligned_cols=246 Identities=12% Similarity=0.065 Sum_probs=128.6
Q ss_pred CCCCCCCccccchhHHHHHHhhcc---cCCCeEEEEEeecCCChhHHHHHHHHHHHhcc-----CC--ceEEEEechhhh
Q 044579 177 ESTDLDGLVGLNTRIEEMKSLLCL---ESHDVRIVGIWGMGGIGKTTIASVVFHQISRH-----FQ--GKCFMANVREKA 246 (1103)
Q Consensus 177 ~~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----F~--~~~~~~~~~~~~ 246 (1103)
+...++.++||++++++|...|.. ++....++.|+|++|.|||+.++.|.+++... .+ ..+++.+ .
T Consensus 750 ~DYVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINC----m 825 (1164)
T PTZ00112 750 LDVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEING----M 825 (1164)
T ss_pred cccCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeC----C
Confidence 445568899999999999888762 23334677899999999999999999876432 11 1334432 1
Q ss_pred cccChHHHHHHHHHhhhCCCCccccc--cchHHHHHhh-c--CCceEEEEeCCCCCHh--HHHHHhCCCCcc-CCCcEEE
Q 044579 247 NKMGVIHVRDEVISQVLGENLKIGTL--IVPQNIKKRL-Q--RVKVLIVLDDVNDEFT--QLESLAGGVDRF-SPGSRIV 318 (1103)
Q Consensus 247 ~~~~~~~~~~~ll~~l~~~~~~~~~~--~~~~~l~~~L-~--~k~~LlVLDdv~~~~~--~l~~l~~~~~~~-~~gs~II 318 (1103)
.......+...+..++.+.....+.. .....+...+ . +...+||||+|+ ... .-+.|...+.|. ..+++|+
T Consensus 826 ~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID-~L~kK~QDVLYnLFR~~~~s~SKLi 904 (1164)
T PTZ00112 826 NVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEID-YLITKTQKVLFTLFDWPTKINSKLV 904 (1164)
T ss_pred ccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHh-hhCccHHHHHHHHHHHhhccCCeEE
Confidence 12334455566666664433221110 1111233333 1 224699999997 321 112222111111 2355554
Q ss_pred E--EeCchhh--------HhhcCcceEEEccCCChhHHHHHHHHhhhcc-CCCChh-HHHHHHHHHHHhCCChhHHHHHH
Q 044579 319 I--TTRDKQV--------LDKCGVSYIYKVKRLEHDNALELFCRKAIRQ-NSRSQD-LLELSKEIVGYAKGNPLALEVLG 386 (1103)
Q Consensus 319 i--TTR~~~v--------~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~-~~~~~~-~~~~~~~i~~~~~G~PLal~~lg 386 (1103)
| +|.+... ...++ ...+..++++.++..+++..++-.. ..-.++ .+-+|+.++...|-.-.||.++-
T Consensus 905 LIGISNdlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILR 983 (1164)
T PTZ00112 905 LIAISNTMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICR 983 (1164)
T ss_pred EEEecCchhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHH
Confidence 4 3332211 11222 2235679999999999999987432 111222 33333434333344556666554
Q ss_pred hhcCC-----CCHHHHHHHHHHhhhcCCcchhhHHHhhhcCCCHHHHHHHhhhh
Q 044579 387 SSLYQ-----KSKQQWKVKLQNLKLISEPNIYNVLKISYDDLNPEEKKIFLDIA 435 (1103)
Q Consensus 387 ~~L~~-----~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a 435 (1103)
.+... ...+....+...+.. ..+.-....||.+.|-++..++
T Consensus 984 rAgEikegskVT~eHVrkAleeiE~-------srI~e~IktLPlHqKLVLlALI 1030 (1164)
T PTZ00112 984 KAFENKRGQKIVPRDITEATNQLFD-------SPLTNAINYLPWPFKMFLTCLI 1030 (1164)
T ss_pred HHHhhcCCCccCHHHHHHHHHHHHh-------hhHHHHHHcCCHHHHHHHHHHH
Confidence 44321 122333333332211 1223334678888877666444
No 56
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.50 E-value=1.2e-06 Score=101.99 Aligned_cols=179 Identities=20% Similarity=0.310 Sum_probs=106.2
Q ss_pred CCCCCCccccchhHHH---HHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHH
Q 044579 178 STDLDGLVGLNTRIEE---MKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHV 254 (1103)
Q Consensus 178 ~~~~~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~ 254 (1103)
|...+++||.+..+.. +..++.. .....+.++|++|+||||+|+.+++.....|.. +... ..+...
T Consensus 8 P~~l~d~vGq~~~v~~~~~L~~~i~~--~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~---l~a~-----~~~~~~- 76 (413)
T PRK13342 8 PKTLDEVVGQEHLLGPGKPLRRMIEA--GRLSSMILWGPPGTGKTTLARIIAGATDAPFEA---LSAV-----TSGVKD- 76 (413)
T ss_pred CCCHHHhcCcHHHhCcchHHHHHHHc--CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE---Eecc-----cccHHH-
Confidence 3445678999887666 7777653 345578899999999999999999876554421 1110 111111
Q ss_pred HHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCC-CHhHHHHHhCCCCccCCCcEEEEE--eCchh--hHhh
Q 044579 255 RDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVND-EFTQLESLAGGVDRFSPGSRIVIT--TRDKQ--VLDK 329 (1103)
Q Consensus 255 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~-~~~~l~~l~~~~~~~~~gs~IIiT--TR~~~--v~~~ 329 (1103)
.++++.... .....+++.+|++|+++. ...+.+.+...+. .|..++|. |.+.. +...
T Consensus 77 ir~ii~~~~---------------~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~a 138 (413)
T PRK13342 77 LREVIEEAR---------------QRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPA 138 (413)
T ss_pred HHHHHHHHH---------------HhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHH
Confidence 112221111 011135788999999973 2344555555433 35555553 34332 1111
Q ss_pred -cCcceEEEccCCChhHHHHHHHHhhhccCCCC-hhHHHHHHHHHHHhCCChhHHHHH
Q 044579 330 -CGVSYIYKVKRLEHDNALELFCRKAIRQNSRS-QDLLELSKEIVGYAKGNPLALEVL 385 (1103)
Q Consensus 330 -~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~G~PLal~~l 385 (1103)
......+++.+++.++..+++.+.+....... .-..+....+++.++|.+..+..+
T Consensus 139 L~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~ 196 (413)
T PRK13342 139 LLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNL 196 (413)
T ss_pred HhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHH
Confidence 12236889999999999999988653211111 122456778899999999765433
No 57
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.48 E-value=2.5e-06 Score=91.17 Aligned_cols=174 Identities=18% Similarity=0.285 Sum_probs=102.1
Q ss_pred CCCccc--cchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHHHH
Q 044579 181 LDGLVG--LNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRDEV 258 (1103)
Q Consensus 181 ~~~~vG--r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~l 258 (1103)
.++|++ .+..++++.+++. ....+.+.|+|.+|+|||++|+.++++........+++. ..+.... ...+
T Consensus 14 ~~~~~~~~~~~~~~~l~~~~~--~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~-~~~~~~~------~~~~ 84 (226)
T TIGR03420 14 FDNFYAGGNAELLAALRQLAA--GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP-LAELAQA------DPEV 84 (226)
T ss_pred hcCcCcCCcHHHHHHHHHHHh--cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEe-HHHHHHh------HHHH
Confidence 455663 3345667777654 233568999999999999999999987655544455554 2221100 0011
Q ss_pred HHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCCCHh----HHHHHhCCCCc-cCCCcEEEEEeCchh--------
Q 044579 259 ISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVNDEFT----QLESLAGGVDR-FSPGSRIVITTRDKQ-------- 325 (1103)
Q Consensus 259 l~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~----~l~~l~~~~~~-~~~gs~IIiTTR~~~-------- 325 (1103)
+ ..+.+ .-+||+||++ ... +.+.+...+.. ...+.++|+||+...
T Consensus 85 ~--------------------~~~~~-~~lLvIDdi~-~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~ 142 (226)
T TIGR03420 85 L--------------------EGLEQ-ADLVCLDDVE-AIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLP 142 (226)
T ss_pred H--------------------hhccc-CCEEEEeChh-hhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccH
Confidence 1 11122 2389999996 221 12333322211 123458899887432
Q ss_pred -hHhhcCcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhHHHHHHh
Q 044579 326 -VLDKCGVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLALEVLGS 387 (1103)
Q Consensus 326 -v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~lg~ 387 (1103)
+...+.....+++++++.++...++...+-..... -..+..+.+++.+.|+|..+..+..
T Consensus 143 ~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~--~~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 143 DLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQ--LPDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred HHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhccCCHHHHHHHHH
Confidence 11122224578999999999999988765322221 1235667788889999987766644
No 58
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.45 E-value=1e-08 Score=108.34 Aligned_cols=245 Identities=17% Similarity=0.152 Sum_probs=139.3
Q ss_pred cccccccccccccccc-----ccccccccCCcceEecCCCCC---CCccCCC--------CCCCCCccEEEecCCCCCCc
Q 044579 594 ELENLIELRLPYSKVE-----QIWEGKKEASKLKSIDLCHSQ---HLIRMPD--------LSEIPNLERTNFFNCTNLVL 657 (1103)
Q Consensus 594 ~l~~L~~L~L~~n~i~-----~l~~~~~~l~~L~~L~L~~~~---~~~~~p~--------l~~l~~L~~L~L~~~~~l~~ 657 (1103)
.+..++.|+|++|.+. .+...+.+.++|+..++++-- ....+|+ +-.++.|+.|+|+.|-.-..
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 4677888889988875 344556777788888887642 1222332 45566777777777654332
Q ss_pred cc----ccccCCCcccEEEccCCCCCcccCCCCCCCCCcEEEccCCcCCCcCCCcCCCccEEecCCccceecCc-----c
Q 044579 658 VP----SSIQNFNNLSMLCFRGCESLRSFPRDIHFVSPVTIDFSFCVNLTEFPKISGKITELNLCDTAIEEVPS-----S 728 (1103)
Q Consensus 658 ~~----~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~-----~ 728 (1103)
.+ .-+.++..|++|.|.+|..-..-...+ -..|..| ... +......+|+.+...+|.+..-+. .
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l-~~al~~l-----~~~-kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~ 180 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRL-GRALFEL-----AVN-KKAASKPKLRVFICGRNRLENGGATALAEA 180 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHH-HHHHHHH-----HHH-hccCCCcceEEEEeeccccccccHHHHHHH
Confidence 22 234456677777777664221100000 0000000 000 111223456777777777664433 3
Q ss_pred ccCCCCCCEEecCCCcccc----cccccccCCCCCcEEeecCCCCCCcc-ccCCccccCCCCCCeeeccCCCCCCCCCCC
Q 044579 729 VECLTNLKELYLSRCSTLN----RLSTSICKLKSLHELILSDCLSLETI-TELPSSFANLEGLEKLVLVGCSKLNKLPHS 803 (1103)
Q Consensus 729 ~~~l~~L~~L~L~~~~~~~----~lp~~l~~l~~L~~L~L~~~~~l~~i-~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~ 803 (1103)
+...+.|+.+.+..|.+.. .+-..+..+++|+.|+|.+|.....- ..+...+..+++|+.|++++|.+...-...
T Consensus 181 ~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a 260 (382)
T KOG1909|consen 181 FQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIA 260 (382)
T ss_pred HHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHH
Confidence 5666777888777776532 23345667778888888776432210 012334556777888888888754422100
Q ss_pred ---cccCCCCCCCEEeCCCCCcc-----ccCccccCCCCCCEEeccCCcC
Q 044579 804 ---IDFCCLSSLQWLDLSGNNFE-----SLPSSIKQLSQLRKLDLSNCNM 845 (1103)
Q Consensus 804 ---~~~~~l~~L~~L~Ls~n~l~-----~lp~~i~~l~~L~~L~L~~n~~ 845 (1103)
..-...|+|+.|.+.+|.++ .+-..+...+.|..|+|++|.+
T Consensus 261 ~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 261 FVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 01123678888888888877 2334556678888888888875
No 59
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=6.2e-09 Score=107.10 Aligned_cols=177 Identities=20% Similarity=0.209 Sum_probs=108.6
Q ss_pred cccccccccccccc--ccccccccCCcceEecCCCCCCCccCCC-CCCCCCccEEEecCCCCCCccc--ccccCCCcccE
Q 044579 596 ENLIELRLPYSKVE--QIWEGKKEASKLKSIDLCHSQHLIRMPD-LSEIPNLERTNFFNCTNLVLVP--SSIQNFNNLSM 670 (1103)
Q Consensus 596 ~~L~~L~L~~n~i~--~l~~~~~~l~~L~~L~L~~~~~~~~~p~-l~~l~~L~~L~L~~~~~l~~~~--~~i~~l~~L~~ 670 (1103)
..|++|||+++.|+ ++-.-++.+.+|+.|.|.++++...+-. +.+-.+|+.|+|+.|+.+++.. --+.+++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 45888999988887 5555577888999999998876544432 6777889999999888776533 23567788888
Q ss_pred EEccCCCCCcccCCCC---CCCCCcEEEccCCcCCCcCCCcCCCccEEecCCccceecCccccCCCCCCEEecCCCcccc
Q 044579 671 LCFRGCESLRSFPRDI---HFVSPVTIDFSFCVNLTEFPKISGKITELNLCDTAIEEVPSSVECLTNLKELYLSRCSTLN 747 (1103)
Q Consensus 671 L~L~~~~~l~~lp~~~---~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~ 747 (1103)
|+|++|......-..+ -.+.|..|+++||...- ....+..-...+++|..|||++|..+.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl-----------------~~sh~~tL~~rcp~l~~LDLSD~v~l~ 327 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNL-----------------QKSHLSTLVRRCPNLVHLDLSDSVMLK 327 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhh-----------------hhhHHHHHHHhCCceeeeccccccccC
Confidence 8888876544321111 12334444444432100 001111123567888888888875443
Q ss_pred -cccccccCCCCCcEEeecCCCCCCccccCCc---cccCCCCCCeeeccCC
Q 044579 748 -RLSTSICKLKSLHELILSDCLSLETITELPS---SFANLEGLEKLVLVGC 794 (1103)
Q Consensus 748 -~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~---~~~~l~~L~~L~L~~~ 794 (1103)
..-..|.+++.|++|.++.|..+ .|. .+...|+|.+|++.+|
T Consensus 328 ~~~~~~~~kf~~L~~lSlsRCY~i-----~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 328 NDCFQEFFKFNYLQHLSLSRCYDI-----IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred chHHHHHHhcchheeeehhhhcCC-----ChHHeeeeccCcceEEEEeccc
Confidence 22334567777777777777543 222 2445566666666655
No 60
>PLN03150 hypothetical protein; Provisional
Probab=98.44 E-value=3.6e-07 Score=111.66 Aligned_cols=111 Identities=23% Similarity=0.321 Sum_probs=66.7
Q ss_pred CCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCE
Q 044579 735 LKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQW 814 (1103)
Q Consensus 735 L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~ 814 (1103)
++.|+|++|.+.+.+|..++.+++|+.|+|++|..... +|..++.+++|+.|+|++|.+.+.+| ..++.+++|+.
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~---iP~~~~~l~~L~~LdLs~N~lsg~iP--~~l~~L~~L~~ 494 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN---IPPSLGSITSLEVLDLSYNSFNGSIP--ESLGQLTSLRI 494 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCc---CChHHhCCCCCCEEECCCCCCCCCCc--hHHhcCCCCCE
Confidence 45566666666666666666666666666666543322 56566666666666666666665553 33455666666
Q ss_pred EeCCCCCcc-ccCccccCC-CCCCEEeccCCcCCcccC
Q 044579 815 LDLSGNNFE-SLPSSIKQL-SQLRKLDLSNCNMLLSLP 850 (1103)
Q Consensus 815 L~Ls~n~l~-~lp~~i~~l-~~L~~L~L~~n~~l~~lp 850 (1103)
|+|++|+++ .+|..+..+ .++..+++.+|+.+...|
T Consensus 495 L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 495 LNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred EECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 666666666 566655442 355667777776554444
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.41 E-value=1.2e-06 Score=97.77 Aligned_cols=140 Identities=23% Similarity=0.341 Sum_probs=71.9
Q ss_pred ccCCCcccEEEccCCCCCcccCCCCCCCCCcEEEccCCcCCCcCCCcCCCccEEecCCccceecCccccCCCCCCEEecC
Q 044579 662 IQNFNNLSMLCFRGCESLRSFPRDIHFVSPVTIDFSFCVNLTEFPKISGKITELNLCDTAIEEVPSSVECLTNLKELYLS 741 (1103)
Q Consensus 662 i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~ 741 (1103)
+..++++..|++++| .++.+|. -..+|+.|.+++|..+..+|..+ .++|+.|+++
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~--LP~sLtsL~Lsnc~nLtsLP~~L----------------------P~nLe~L~Ls 102 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV--LPNELTEITIENCNNLTTLPGSI----------------------PEGLEKLTVC 102 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC--CCCCCcEEEccCCCCcccCCchh----------------------hhhhhheEcc
Confidence 444678888888887 6777772 23468888888887776666422 1245555555
Q ss_pred CCcccccccccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCC
Q 044579 742 RCSTLNRLSTSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNN 821 (1103)
Q Consensus 742 ~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~ 821 (1103)
+|..+..+|. +|+.|+++++. ...+..+|. +|+.|.+.+++.....+.+. .-.++|++|++++|.
T Consensus 103 ~Cs~L~sLP~------sLe~L~L~~n~-~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~ 167 (426)
T PRK15386 103 HCPEISGLPE------SVRSLEIKGSA-TDSIKNVPN------GLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCS 167 (426)
T ss_pred Cccccccccc------ccceEEeCCCC-CcccccCcc------hHhheecccccccccccccc--ccCCcccEEEecCCC
Confidence 5543333443 24444444321 122333443 24444443322111110010 113566777776666
Q ss_pred ccccCccccCCCCCCEEeccCC
Q 044579 822 FESLPSSIKQLSQLRKLDLSNC 843 (1103)
Q Consensus 822 l~~lp~~i~~l~~L~~L~L~~n 843 (1103)
...+|..+. .+|+.|+++.|
T Consensus 168 ~i~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 168 NIILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred cccCccccc--ccCcEEEeccc
Confidence 555554433 46677776654
No 62
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.37 E-value=1.2e-08 Score=107.98 Aligned_cols=252 Identities=19% Similarity=0.171 Sum_probs=145.7
Q ss_pred hhhcCcccceEEEecCCCCCccccCcceecCCCcccCCCceEEEEEcCCC----CCCCCCcccccccccccccccccccc
Q 044579 536 AFANMSNLRLLKFYMPERGGVPIMSSKVHLDQGLEDLPEKLRYLHWHGYP----LKTLPFDFELENLIELRLPYSKVEQI 611 (1103)
Q Consensus 536 ~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~----l~~lp~~~~l~~L~~L~L~~n~i~~l 611 (1103)
....+..+..++|++|.++... .-.+...+...+ +|+.-+|+..- ...+|.. | ..+
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EA----a~~i~~~L~~~~-~L~~v~~sd~ftGR~~~Ei~e~-----L----------~~l 84 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEA----ARAIAKVLASKK-ELREVNLSDMFTGRLKDEIPEA-----L----------KML 84 (382)
T ss_pred HhcccCceEEEeccCCchhHHH----HHHHHHHHhhcc-cceeeehHhhhcCCcHHHHHHH-----H----------HHH
Confidence 3456777888888887664210 011222333333 56666665431 1122211 1 112
Q ss_pred ccccccCCcceEecCCCCCCCccCCC-----CCCCCCccEEEecCCCCCCccc-------------ccccCCCcccEEEc
Q 044579 612 WEGKKEASKLKSIDLCHSQHLIRMPD-----LSEIPNLERTNFFNCTNLVLVP-------------SSIQNFNNLSMLCF 673 (1103)
Q Consensus 612 ~~~~~~l~~L~~L~L~~~~~~~~~p~-----l~~l~~L~~L~L~~~~~l~~~~-------------~~i~~l~~L~~L~L 673 (1103)
.+.+...++|++||||+|-+-..-+. ++.+.+|++|.|.+|..-..-. .-+++-++|+.+..
T Consensus 85 ~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~ 164 (382)
T KOG1909|consen 85 SKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFIC 164 (382)
T ss_pred HHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEe
Confidence 23445566888888888876443332 5678888999988875432211 12333445555555
Q ss_pred cCCCCCcccCCCCCCCCCcEEEccCCcCCCcCCCcCCCccEEecCCccce-----ecCccccCCCCCCEEecCCCcccc-
Q 044579 674 RGCESLRSFPRDIHFVSPVTIDFSFCVNLTEFPKISGKITELNLCDTAIE-----EVPSSVECLTNLKELYLSRCSTLN- 747 (1103)
Q Consensus 674 ~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~L~~~~i~-----~lp~~~~~l~~L~~L~L~~~~~~~- 747 (1103)
..| .+...+... +...-...+.|+.+.+..|.|. -+-..+..+++|+.|+|.+|.+..
T Consensus 165 ~rN-rlen~ga~~---------------~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~e 228 (382)
T KOG1909|consen 165 GRN-RLENGGATA---------------LAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLE 228 (382)
T ss_pred ecc-ccccccHHH---------------HHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhH
Confidence 442 222211100 0011123356777888877775 233467889999999999997763
Q ss_pred ---cccccccCCCCCcEEeecCCCCCCcc-ccCCcc-ccCCCCCCeeeccCCCCCCCCCC--CcccCCCCCCCEEeCCCC
Q 044579 748 ---RLSTSICKLKSLHELILSDCLSLETI-TELPSS-FANLEGLEKLVLVGCSKLNKLPH--SIDFCCLSSLQWLDLSGN 820 (1103)
Q Consensus 748 ---~lp~~l~~l~~L~~L~L~~~~~l~~i-~~lp~~-~~~l~~L~~L~L~~~~~~~~lp~--~~~~~~l~~L~~L~Ls~n 820 (1103)
.+...++.+++|++|++++|..-+.= ..+-.. -...|+|+.|.|.+|.+...-.. .......+.|..|+|++|
T Consensus 229 gs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 229 GSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred HHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 34556778999999999999644320 001111 23478999999999987642100 112234799999999999
Q ss_pred Ccc
Q 044579 821 NFE 823 (1103)
Q Consensus 821 ~l~ 823 (1103)
.+.
T Consensus 309 ~l~ 311 (382)
T KOG1909|consen 309 RLG 311 (382)
T ss_pred ccc
Confidence 983
No 63
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.35 E-value=2.5e-06 Score=86.86 Aligned_cols=182 Identities=18% Similarity=0.244 Sum_probs=99.6
Q ss_pred CCCCCCCccccchhHHHHHHhhcc---cCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHH
Q 044579 177 ESTDLDGLVGLNTRIEEMKSLLCL---ESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIH 253 (1103)
Q Consensus 177 ~~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~ 253 (1103)
.|...++|||.++-++.+.-++.. ..+....+.+||++|+||||||..+++.....|. +... .... ...+
T Consensus 19 RP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~---~~sg-~~i~---k~~d 91 (233)
T PF05496_consen 19 RPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK---ITSG-PAIE---KAGD 91 (233)
T ss_dssp S-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE---EEEC-CC-----SCHH
T ss_pred CCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE---eccc-hhhh---hHHH
Confidence 455678999999999887766542 2345678999999999999999999998877763 1110 0000 0011
Q ss_pred HHHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCC-CHhHHHHHhCCCCc--------cCCC----------
Q 044579 254 VRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVND-EFTQLESLAGGVDR--------FSPG---------- 314 (1103)
Q Consensus 254 ~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~-~~~~l~~l~~~~~~--------~~~g---------- 314 (1103)
+ . .+...++ ++.+|.+|.+.. +..+-+.|.+.... .+++
T Consensus 92 l-~--------------------~il~~l~-~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~ 149 (233)
T PF05496_consen 92 L-A--------------------AILTNLK-EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPP 149 (233)
T ss_dssp H-H--------------------HHHHT---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE---
T ss_pred H-H--------------------HHHHhcC-CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCC
Confidence 1 1 1111222 355778899963 23333443322211 1222
Q ss_pred -cEEEEEeCchhhHhhc--CcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhHHHHHHhhc
Q 044579 315 -SRIVITTRDKQVLDKC--GVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLALEVLGSSL 389 (1103)
Q Consensus 315 -s~IIiTTR~~~v~~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~lg~~L 389 (1103)
+-|=-|||...+.... ......+++..+.+|-.++..+.+..-+. +-..+.+.+|++++.|-|--..-+-...
T Consensus 150 FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i--~i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 150 FTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI--EIDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp -EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT---EE-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred ceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC--CcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 2344578865443332 22345689999999999999887743322 2245788999999999996555444433
No 64
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.35 E-value=1e-05 Score=92.37 Aligned_cols=199 Identities=14% Similarity=0.132 Sum_probs=107.0
Q ss_pred CCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccC-Cc-eEEEEechhhhcccChHHHH
Q 044579 178 STDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHF-QG-KCFMANVREKANKMGVIHVR 255 (1103)
Q Consensus 178 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~-~~~~~~~~~~~~~~~~~~~~ 255 (1103)
|...++++|++..++.+..++..+ ..+.+.++|++|+||||+|+++++.+.... .. .+++. ..+..... ...+.
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~-~~~~~~~~-~~~~~ 86 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFN-VADFFDQG-KKYLV 86 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEec-hhhhhhcc-hhhhh
Confidence 444577999999999999988643 334678999999999999999998764332 22 22332 21111000 00000
Q ss_pred HH-HHHhhhCCCC--ccccccchH-HHHHh-----hcCCceEEEEeCCCCC-HhHHHHHhCCCCccCCCcEEEEEeCch-
Q 044579 256 DE-VISQVLGENL--KIGTLIVPQ-NIKKR-----LQRVKVLIVLDDVNDE-FTQLESLAGGVDRFSPGSRIVITTRDK- 324 (1103)
Q Consensus 256 ~~-ll~~l~~~~~--~~~~~~~~~-~l~~~-----L~~k~~LlVLDdv~~~-~~~l~~l~~~~~~~~~gs~IIiTTR~~- 324 (1103)
.. ......+... ........+ .++.. ....+-+||+||++.- ....+.+...+......+++|+||...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~ 166 (337)
T PRK12402 87 EDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPS 166 (337)
T ss_pred cCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChh
Confidence 00 0000000000 000000111 11111 1133458999999722 122333433333334567788877543
Q ss_pred hhHhhc-CcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhHH
Q 044579 325 QVLDKC-GVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLAL 382 (1103)
Q Consensus 325 ~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal 382 (1103)
.+.... .....+++.+++.++..+++...+-..... -..+....++++++|.+-.+
T Consensus 167 ~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~--~~~~al~~l~~~~~gdlr~l 223 (337)
T PRK12402 167 KLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD--YDDDGLELIAYYAGGDLRKA 223 (337)
T ss_pred hCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 222221 223578899999999999998876433322 12456778888888876544
No 65
>PRK08727 hypothetical protein; Validated
Probab=98.31 E-value=1.6e-05 Score=84.86 Aligned_cols=169 Identities=12% Similarity=0.134 Sum_probs=96.0
Q ss_pred CCCccccchh-HHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHHHHH
Q 044579 181 LDGLVGLNTR-IEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRDEVI 259 (1103)
Q Consensus 181 ~~~~vGr~~~-~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ll 259 (1103)
.++||+.... +..+..+.. + .....+.|+|..|+|||+||+++++....+...+.|+. ..+ ....+.
T Consensus 18 f~~f~~~~~n~~~~~~~~~~-~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~-~~~---------~~~~~~ 85 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAA-G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP-LQA---------AAGRLR 85 (233)
T ss_pred hhhccCCcHHHHHHHHHHHh-c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe-HHH---------hhhhHH
Confidence 4556655543 333333322 1 22346999999999999999999998766655566665 111 000000
Q ss_pred HhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCCC--HhHH-HHHhCCCCc-cCCCcEEEEEeCchh---------h
Q 044579 260 SQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVNDE--FTQL-ESLAGGVDR-FSPGSRIVITTRDKQ---------V 326 (1103)
Q Consensus 260 ~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~l-~~l~~~~~~-~~~gs~IIiTTR~~~---------v 326 (1103)
...+.+ .+.-+||+||++.. ...+ +.+...++. ...|..||+|++... +
T Consensus 86 -----------------~~~~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL 147 (233)
T PRK08727 86 -----------------DALEAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDL 147 (233)
T ss_pred -----------------HHHHHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHH
Confidence 011111 12358999999621 1112 222221111 134677999998532 2
Q ss_pred HhhcCcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhH
Q 044579 327 LDKCGVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLA 381 (1103)
Q Consensus 327 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLa 381 (1103)
...+.....+++++++.++-.+++.+++...... -..+....+++++.|-.-.
T Consensus 148 ~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~--l~~e~~~~La~~~~rd~r~ 200 (233)
T PRK08727 148 RSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLA--LDEAAIDWLLTHGERELAG 200 (233)
T ss_pred HHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhCCCCHHH
Confidence 2222335688999999999999999877543221 1235566777777655443
No 66
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.31 E-value=3e-05 Score=87.69 Aligned_cols=184 Identities=16% Similarity=0.200 Sum_probs=105.9
Q ss_pred CCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHHH
Q 044579 178 STDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRDE 257 (1103)
Q Consensus 178 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ 257 (1103)
|...++++|++..++.+..++..+ ..+.+.|+|.+|+||||+|+.+++.+........++. +. .+...+.. ...+
T Consensus 13 P~~~~~~~g~~~~~~~l~~~i~~~--~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~-~~-~~~~~~~~-~~~~ 87 (319)
T PRK00440 13 PRTLDEIVGQEEIVERLKSYVKEK--NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLE-LN-ASDERGID-VIRN 87 (319)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEE-ec-cccccchH-HHHH
Confidence 344567899999999999988643 3345799999999999999999987643221111221 10 01111111 1111
Q ss_pred HHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCCC-HhHHHHHhCCCCccCCCcEEEEEeCch-hhHhhc-Ccce
Q 044579 258 VISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVNDE-FTQLESLAGGVDRFSPGSRIVITTRDK-QVLDKC-GVSY 334 (1103)
Q Consensus 258 ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~-~~~l~~l~~~~~~~~~gs~IIiTTR~~-~v~~~~-~~~~ 334 (1103)
.+.+...... .-...+-++++|+++.- ....+.+...+....+.+++|+++... .+.... ....
T Consensus 88 ~i~~~~~~~~-------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~ 154 (319)
T PRK00440 88 KIKEFARTAP-------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCA 154 (319)
T ss_pred HHHHHHhcCC-------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhh
Confidence 1111111000 00123568999998621 223344444444445567777777432 221111 1234
Q ss_pred EEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhH
Q 044579 335 IYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLA 381 (1103)
Q Consensus 335 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLa 381 (1103)
.+++.+++.++....+...+-..+..- ..+....+++.++|.+.-
T Consensus 155 ~~~~~~l~~~ei~~~l~~~~~~~~~~i--~~~al~~l~~~~~gd~r~ 199 (319)
T PRK00440 155 VFRFSPLKKEAVAERLRYIAENEGIEI--TDDALEAIYYVSEGDMRK 199 (319)
T ss_pred eeeeCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHH
Confidence 689999999999999888775433221 235677888999998754
No 67
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.29 E-value=2.5e-05 Score=92.97 Aligned_cols=185 Identities=15% Similarity=0.177 Sum_probs=111.7
Q ss_pred CCCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhcc---------------------CCc
Q 044579 177 ESTDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRH---------------------FQG 235 (1103)
Q Consensus 177 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~ 235 (1103)
.|...+++||.+.-++.|..++..+. -.+.+.++|..|+||||+|+.+++.+-.. |..
T Consensus 11 RPqtFdEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~D 89 (830)
T PRK07003 11 RPKDFASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVD 89 (830)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCce
Confidence 34456789999999999999886432 24566799999999999999999865321 111
Q ss_pred eEEEEechhhhcccChHHHHHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCC-CHhHHHHHhCCCCccCCC
Q 044579 236 KCFMANVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVND-EFTQLESLAGGVDRFSPG 314 (1103)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~-~~~~l~~l~~~~~~~~~g 314 (1103)
.+.+. .....++.. .++++.... ..-..++.-++|||+++. ....++.|+..+......
T Consensus 90 viEID----Aas~rgVDd-IReLIe~a~---------------~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~ 149 (830)
T PRK07003 90 YVEMD----AASNRGVDE-MAALLERAV---------------YAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPH 149 (830)
T ss_pred EEEec----ccccccHHH-HHHHHHHHH---------------hccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCC
Confidence 11111 000011111 111111110 000123455888999973 223466666655555567
Q ss_pred cEEEEEeCchhhH-hh-cCcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCCh-hHHHH
Q 044579 315 SRIVITTRDKQVL-DK-CGVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNP-LALEV 384 (1103)
Q Consensus 315 s~IIiTTR~~~v~-~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P-Lal~~ 384 (1103)
.++|+||.+.+-. .. ......+.++.++.++..+.+.+.+-..+.. -..+....|++.++|.. -|+..
T Consensus 150 v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~--id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIA--FEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred eEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 8888888766432 22 1334689999999999999998876433222 12356778888888865 45544
No 68
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=4.5e-05 Score=87.18 Aligned_cols=192 Identities=14% Similarity=0.138 Sum_probs=109.5
Q ss_pred CCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHHH
Q 044579 178 STDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRDE 257 (1103)
Q Consensus 178 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ 257 (1103)
|...+++||.+.-++.+...+..+. -.+.+.++|+.|+||||+|+.+++.+....... ....+.-....+
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~---------~~pc~~c~~c~~ 81 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT---------SNPCRKCIICKE 81 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC---------CCCCCCCHHHHH
Confidence 4456789999999999988886432 346778999999999999999998764211100 000000000001
Q ss_pred HHHhhhCCCCcc-----ccccchHHHHHhh-----cCCceEEEEeCCCCC-HhHHHHHhCCCCccCCCcEEEEEeCchh-
Q 044579 258 VISQVLGENLKI-----GTLIVPQNIKKRL-----QRVKVLIVLDDVNDE-FTQLESLAGGVDRFSPGSRIVITTRDKQ- 325 (1103)
Q Consensus 258 ll~~l~~~~~~~-----~~~~~~~~l~~~L-----~~k~~LlVLDdv~~~-~~~l~~l~~~~~~~~~gs~IIiTTR~~~- 325 (1103)
+.......-... ...+....+.+.+ .+++-++|+|+++.- ...++.+...+....+..++|++|.+..
T Consensus 82 ~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~ 161 (363)
T PRK14961 82 IEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEK 161 (363)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHh
Confidence 100000000000 0000001111111 234569999999732 2245666666655556777777765443
Q ss_pred hHhh-cCcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhH
Q 044579 326 VLDK-CGVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLA 381 (1103)
Q Consensus 326 v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLa 381 (1103)
+... ......+++++++.++..+.+...+-..+... ..+.+..|++.++|.|-.
T Consensus 162 l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i--~~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 162 IPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDT--DEYALKLIAYHAHGSMRD 216 (363)
T ss_pred hhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHH
Confidence 3322 12346899999999999998887664433211 235667888999998853
No 69
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=3.3e-05 Score=91.09 Aligned_cols=181 Identities=17% Similarity=0.131 Sum_probs=110.5
Q ss_pred CCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccC---------------------Cce
Q 044579 178 STDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHF---------------------QGK 236 (1103)
Q Consensus 178 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F---------------------~~~ 236 (1103)
|...+++||.+.-.+.|..++..+. -.+.+.++|+.|+||||+|+.+++.+-... ...
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDv 89 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDL 89 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCce
Confidence 4456789999999999999886432 246789999999999999999998753211 111
Q ss_pred EEEEechhhhcccChHHHHHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCC-CHhHHHHHhCCCCccCCCc
Q 044579 237 CFMANVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVND-EFTQLESLAGGVDRFSPGS 315 (1103)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~-~~~~l~~l~~~~~~~~~gs 315 (1103)
+.+. .+...++..+ ++++.... .....+++-++|+|+|+. +......+...+.....+.
T Consensus 90 iEID----AAs~~~VddI-Reli~~~~---------------y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v 149 (702)
T PRK14960 90 IEID----AASRTKVEDT-RELLDNVP---------------YAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHV 149 (702)
T ss_pred EEec----ccccCCHHHH-HHHHHHHh---------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCc
Confidence 1111 0000111111 11111100 001135567899999973 2345566665555555667
Q ss_pred EEEEEeCchhh-Hhh-cCcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhH
Q 044579 316 RIVITTRDKQV-LDK-CGVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLA 381 (1103)
Q Consensus 316 ~IIiTTR~~~v-~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLa 381 (1103)
++|++|.+..- ... ......+++++++.++..+.+...+-..+.. -..+....|++.++|.+..
T Consensus 150 ~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~--id~eAL~~IA~~S~GdLRd 215 (702)
T PRK14960 150 KFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIA--ADQDAIWQIAESAQGSLRD 215 (702)
T ss_pred EEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 78877766432 211 2334688999999999999988776443322 2235667888999997743
No 70
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=3.7e-05 Score=90.67 Aligned_cols=196 Identities=13% Similarity=0.120 Sum_probs=112.1
Q ss_pred CCCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhc--cCCceEEEEechhhhcccChHHH
Q 044579 177 ESTDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISR--HFQGKCFMANVREKANKMGVIHV 254 (1103)
Q Consensus 177 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~F~~~~~~~~~~~~~~~~~~~~~ 254 (1103)
.|...+++||.+.-.+.|..++..+. -.+.+.++|++|+||||+|+.+++.+.. .+...|+.+..... +...
T Consensus 9 RP~~~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~-----i~~~ 82 (504)
T PRK14963 9 RPITFDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA-----VRRG 82 (504)
T ss_pred CCCCHHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH-----HhcC
Confidence 34455778999988888888886432 2456799999999999999999987642 22223332210000 0000
Q ss_pred HHHHHHhhhCCCCccccccchHHHHHh-----hcCCceEEEEeCCCCC-HhHHHHHhCCCCccCCCcEEEEEeCc-hhhH
Q 044579 255 RDEVISQVLGENLKIGTLIVPQNIKKR-----LQRVKVLIVLDDVNDE-FTQLESLAGGVDRFSPGSRIVITTRD-KQVL 327 (1103)
Q Consensus 255 ~~~ll~~l~~~~~~~~~~~~~~~l~~~-----L~~k~~LlVLDdv~~~-~~~l~~l~~~~~~~~~gs~IIiTTR~-~~v~ 327 (1103)
...-+..+.... ....+....+++. ..+++-++|+|+++.. ...++.+...+....+...+|++|.. ..+.
T Consensus 83 ~h~dv~el~~~~--~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~ 160 (504)
T PRK14963 83 AHPDVLEIDAAS--NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMP 160 (504)
T ss_pred CCCceEEecccc--cCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCC
Confidence 000000000000 0000011112221 1245668999999732 34466666665554555666655543 3332
Q ss_pred hhc-CcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhHH
Q 044579 328 DKC-GVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLAL 382 (1103)
Q Consensus 328 ~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal 382 (1103)
... .....+++.+++.++..+.+.+.+-..+... ..+....|++.++|.+--+
T Consensus 161 ~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i--~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 161 PTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREA--EPEALQLVARLADGAMRDA 214 (504)
T ss_pred hHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 222 2346899999999999999998775443322 2356788999999988543
No 71
>PTZ00202 tuzin; Provisional
Probab=98.28 E-value=3.8e-05 Score=85.23 Aligned_cols=196 Identities=14% Similarity=0.118 Sum_probs=114.1
Q ss_pred CCccCCCCcchHHH--HHHHHHHHHHhccc-----CCCCCCCCCccccchhHHHHHHhhccc-CCCeEEEEEeecCCChh
Q 044579 147 SGYDSTESRNDAEL--VEKIVEDISKKLED-----MSESTDLDGLVGLNTRIEEMKSLLCLE-SHDVRIVGIWGMGGIGK 218 (1103)
Q Consensus 147 ~g~~~~~~~~e~~~--i~~iv~~i~~~l~~-----~~~~~~~~~~vGr~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGK 218 (1103)
.||.++++..+..- .+--++...+..++ +..|.+...|+||+.++.+|...|... ....+++.|.|++|+||
T Consensus 220 F~wn~r~y~rqQR~~Ql~~Av~tL~~~~~~~~~~~~~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GK 299 (550)
T PTZ00202 220 FGWNFKNYRTQQRSYQLKVAVSTLTQPLNPRPSTLQSAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGK 299 (550)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHhhcccCCCcccccCCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCH
Confidence 35666655443322 22334444444322 245677899999999999999999733 33456999999999999
Q ss_pred HHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHHHHHHhhhCCCCccccccchHHHHHhh-----c-CCceEEEEe
Q 044579 219 TTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRL-----Q-RVKVLIVLD 292 (1103)
Q Consensus 219 TtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L-----~-~k~~LlVLD 292 (1103)
|||++.+..... ...++.+.+ +..+++..++.++....... ..+....|.+.+ . +++.+||+-
T Consensus 300 TTLlR~~~~~l~----~~qL~vNpr------g~eElLr~LL~ALGV~p~~~-k~dLLrqIqeaLl~~~~e~GrtPVLII~ 368 (550)
T PTZ00202 300 SSLCRSAVRKEG----MPAVFVDVR------GTEDTLRSVVKALGVPNVEA-CGDLLDFISEACRRAKKMNGETPLLVLK 368 (550)
T ss_pred HHHHHHHHhcCC----ceEEEECCC------CHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 999999997653 235555432 55788888888877422211 111222333322 3 677777774
Q ss_pred CCC-CCHhHHHHHhCCCCccCCCcEEEEEeCchhhHhh---cCcceEEEccCCChhHHHHHHHHh
Q 044579 293 DVN-DEFTQLESLAGGVDRFSPGSRIVITTRDKQVLDK---CGVSYIYKVKRLEHDNALELFCRK 353 (1103)
Q Consensus 293 dv~-~~~~~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~ 353 (1103)
==+ ++..-.-.-...+.....-|+|++----+.+-.. ...-..|.++.++.++|.++-...
T Consensus 369 lreg~~l~rvyne~v~la~drr~ch~v~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 369 LREGSSLQRVYNEVVALACDRRLCHVVIEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred ecCCCcHHHHHHHHHHHHccchhheeeeeehHhhcchhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 221 0111110000111112356778876554433111 122357899999999998887654
No 72
>PLN03025 replication factor C subunit; Provisional
Probab=98.27 E-value=1e-05 Score=91.03 Aligned_cols=184 Identities=16% Similarity=0.226 Sum_probs=106.6
Q ss_pred CCCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHh-ccCCceEEEEechhhhcccChHHHH
Q 044579 177 ESTDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQIS-RHFQGKCFMANVREKANKMGVIHVR 255 (1103)
Q Consensus 177 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~~~~~~~~~~~~~~~~~~ 255 (1103)
.|...++++|.+.-++.|..++..+ ..+.+.++|++|+||||+|+.+++.+. ..|...+.-.+ .++..+.. ..
T Consensus 8 rP~~l~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln---~sd~~~~~-~v 81 (319)
T PLN03025 8 RPTKLDDIVGNEDAVSRLQVIARDG--NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELN---ASDDRGID-VV 81 (319)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeec---ccccccHH-HH
Confidence 3445577899998888888877533 344577999999999999999999763 33332211111 11112222 12
Q ss_pred HHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCCC-HhHHHHHhCCCCccCCCcEEEEEeCch-hhHhhc-Cc
Q 044579 256 DEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVNDE-FTQLESLAGGVDRFSPGSRIVITTRDK-QVLDKC-GV 332 (1103)
Q Consensus 256 ~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~-~~~l~~l~~~~~~~~~gs~IIiTTR~~-~v~~~~-~~ 332 (1103)
++.+.......... -.++.-++|+|+++.- ....+.+...+......+++|+++... .+.... ..
T Consensus 82 r~~i~~~~~~~~~~------------~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SR 149 (319)
T PLN03025 82 RNKIKMFAQKKVTL------------PPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSR 149 (319)
T ss_pred HHHHHHHHhccccC------------CCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHh
Confidence 22222211100000 0134668999999732 223344444344445667777777543 222211 12
Q ss_pred ceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChh
Q 044579 333 SYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPL 380 (1103)
Q Consensus 333 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL 380 (1103)
...+++++++.++..+.+...+-..+..-. .+....+++.++|..-
T Consensus 150 c~~i~f~~l~~~~l~~~L~~i~~~egi~i~--~~~l~~i~~~~~gDlR 195 (319)
T PLN03025 150 CAIVRFSRLSDQEILGRLMKVVEAEKVPYV--PEGLEAIIFTADGDMR 195 (319)
T ss_pred hhcccCCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHH
Confidence 357899999999999998887744332221 3567788888888663
No 73
>PRK04195 replication factor C large subunit; Provisional
Probab=98.26 E-value=3e-05 Score=92.22 Aligned_cols=181 Identities=16% Similarity=0.211 Sum_probs=106.6
Q ss_pred CCCCCCCccccchhHHHHHHhhccc--CCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHH
Q 044579 177 ESTDLDGLVGLNTRIEEMKSLLCLE--SHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHV 254 (1103)
Q Consensus 177 ~~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~ 254 (1103)
.|...++++|.+..++++..++..- ....+.+.|+|++|+||||+|+++++++. |+. +-+. . +.... ...
T Consensus 9 rP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~~-ieln-a---sd~r~-~~~ 80 (482)
T PRK04195 9 RPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WEV-IELN-A---SDQRT-ADV 80 (482)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCE-EEEc-c---ccccc-HHH
Confidence 3445677999999999999988632 12267899999999999999999999863 221 1121 1 11111 112
Q ss_pred HHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCCCH-----hHHHHHhCCCCccCCCcEEEEEeCchh-hHh
Q 044579 255 RDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVNDEF-----TQLESLAGGVDRFSPGSRIVITTRDKQ-VLD 328 (1103)
Q Consensus 255 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~-----~~l~~l~~~~~~~~~gs~IIiTTR~~~-v~~ 328 (1103)
...++....... .....++-+||+|+++.-. ..++.+...+. ..+..||+|+.+.. ...
T Consensus 81 i~~~i~~~~~~~-------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~ 145 (482)
T PRK04195 81 IERVAGEAATSG-------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSL 145 (482)
T ss_pred HHHHHHHhhccC-------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccch
Confidence 222222211100 0011357799999997311 22344433322 23445666664432 111
Q ss_pred -h-cCcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhHH
Q 044579 329 -K-CGVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLAL 382 (1103)
Q Consensus 329 -~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal 382 (1103)
. ......+++.+++.++....+...+....... ..+....|++.++|..-.+
T Consensus 146 k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i--~~eaL~~Ia~~s~GDlR~a 199 (482)
T PRK04195 146 RELRNACLMIEFKRLSTRSIVPVLKRICRKEGIEC--DDEALKEIAERSGGDLRSA 199 (482)
T ss_pred hhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 1 12346789999999999998887775433322 2366788889998876544
No 74
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=2.1e-05 Score=95.62 Aligned_cols=185 Identities=14% Similarity=0.157 Sum_probs=112.2
Q ss_pred CCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhcc-C-Cc-eEEEEec-h----------
Q 044579 178 STDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRH-F-QG-KCFMANV-R---------- 243 (1103)
Q Consensus 178 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F-~~-~~~~~~~-~---------- 243 (1103)
|....++||.+.-++.|..++..+. -.+.+.++|..|+||||+|+.+++.+-.. . .. -|..+.. .
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 4456789999999999998886332 23556899999999999999999876432 1 00 0100000 0
Q ss_pred ---hhhcccChHHHHHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCC-CHhHHHHHhCCCCccCCCcEEEE
Q 044579 244 ---EKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVND-EFTQLESLAGGVDRFSPGSRIVI 319 (1103)
Q Consensus 244 ---~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~-~~~~l~~l~~~~~~~~~gs~IIi 319 (1103)
......++.. .++++..+. .....+++-++|+|+++. .....+.|+..+.......++|+
T Consensus 91 iEidAas~~kVDd-IReLie~v~---------------~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFIL 154 (944)
T PRK14949 91 IEVDAASRTKVDD-TRELLDNVQ---------------YRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLL 154 (944)
T ss_pred EEeccccccCHHH-HHHHHHHHH---------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEE
Confidence 0000011111 111211110 011245678999999973 34566777766665556677666
Q ss_pred EeCch-hhHhh-cCcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhH
Q 044579 320 TTRDK-QVLDK-CGVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLA 381 (1103)
Q Consensus 320 TTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLa 381 (1103)
+|.+. .+... ......|++++|+.++..+.+.+.+-.... .-..+....|++.++|.|--
T Consensus 155 aTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI--~~edeAL~lIA~~S~Gd~R~ 216 (944)
T PRK14949 155 ATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL--PFEAEALTLLAKAANGSMRD 216 (944)
T ss_pred ECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHH
Confidence 66544 34322 223478999999999999999876633221 12235678899999998853
No 75
>PLN03150 hypothetical protein; Provisional
Probab=98.24 E-value=1.9e-06 Score=105.49 Aligned_cols=107 Identities=24% Similarity=0.281 Sum_probs=91.2
Q ss_pred ccEEecCCccce-ecCccccCCCCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeee
Q 044579 712 ITELNLCDTAIE-EVPSSVECLTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLV 790 (1103)
Q Consensus 712 L~~L~L~~~~i~-~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~ 790 (1103)
++.|+|++|.+. .+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|..... +|..++++++|+.|+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~---iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS---IPESLGQLTSLRILN 496 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC---CchHHhcCCCCCEEE
Confidence 677888888887 7888999999999999999999999999999999999999999865544 899999999999999
Q ss_pred ccCCCCCCCCCCCcccCCCCCCCEEeCCCCCc
Q 044579 791 LVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNF 822 (1103)
Q Consensus 791 L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l 822 (1103)
|++|.+.+.+|.... ..+.++..+++.+|..
T Consensus 497 Ls~N~l~g~iP~~l~-~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 497 LNGNSLSGRVPAALG-GRLLHRASFNFTDNAG 527 (623)
T ss_pred CcCCcccccCChHHh-hccccCceEEecCCcc
Confidence 999999988864321 1235677899998854
No 76
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.23 E-value=2.4e-07 Score=108.35 Aligned_cols=56 Identities=23% Similarity=0.325 Sum_probs=24.7
Q ss_pred cccccccccccccccccccccccCCcceEecCCCCCCCccCCC-CCCCCCccEEEecC
Q 044579 595 LENLIELRLPYSKVEQIWEGKKEASKLKSIDLCHSQHLIRMPD-LSEIPNLERTNFFN 651 (1103)
Q Consensus 595 l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~p~-l~~l~~L~~L~L~~ 651 (1103)
+..+..+++..|.+..+-..+..+.+|+.|++.+|.+ ..+.+ +..+++|++|++++
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i-~~i~~~l~~~~~L~~L~ls~ 127 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKI-EKIENLLSSLVNLQVLDLSF 127 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccch-hhcccchhhhhcchheeccc
Confidence 3344444444444444333344444555555554442 22223 44444444444444
No 77
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.23 E-value=4.6e-05 Score=86.25 Aligned_cols=202 Identities=12% Similarity=0.061 Sum_probs=112.9
Q ss_pred CCCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhc-cC-CceEEEEechhhhcccChHHH
Q 044579 177 ESTDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISR-HF-QGKCFMANVREKANKMGVIHV 254 (1103)
Q Consensus 177 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F-~~~~~~~~~~~~~~~~~~~~~ 254 (1103)
.|...++++|.+.-.+.+.+.+..+. -...+.++|+.|+||+|+|..+++.+-. .- .....-.... .....+....
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~-~l~~~~~c~~ 91 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT-SLAIDPDHPV 91 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc-cccCCCCChH
Confidence 45556789999999899988886432 2456889999999999999999986532 11 1000000000 0000000001
Q ss_pred HHHHHHhhhCC--------CCcc----c--cccchHHHHHhh-----cCCceEEEEeCCCC-CHhHHHHHhCCCCccCCC
Q 044579 255 RDEVISQVLGE--------NLKI----G--TLIVPQNIKKRL-----QRVKVLIVLDDVND-EFTQLESLAGGVDRFSPG 314 (1103)
Q Consensus 255 ~~~ll~~l~~~--------~~~~----~--~~~~~~~l~~~L-----~~k~~LlVLDdv~~-~~~~l~~l~~~~~~~~~g 314 (1103)
.+.+......+ +... . ..+....+.+.+ .+.+-++|+|+++. +......|...+....++
T Consensus 92 c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~ 171 (365)
T PRK07471 92 ARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPAR 171 (365)
T ss_pred HHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 11111110000 0000 0 001111233332 24567899999963 344555665555544566
Q ss_pred cEEEEEeCchh-hHhh-cCcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhHHHHHH
Q 044579 315 SRIVITTRDKQ-VLDK-CGVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLALEVLG 386 (1103)
Q Consensus 315 s~IIiTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~lg 386 (1103)
+.+|++|.+.. +... ......+.+.+++.++..+++...... .. .+....+++.++|.|+....+.
T Consensus 172 ~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~---~~---~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 172 SLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD---LP---DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred eEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc---CC---HHHHHHHHHHcCCCHHHHHHHh
Confidence 77777776653 3322 233568999999999999999875411 11 1222678999999998665553
No 78
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.23 E-value=2e-07 Score=108.98 Aligned_cols=99 Identities=17% Similarity=0.211 Sum_probs=66.1
Q ss_pred ceEEEEEcCCCCCCCCC-ccccccccccccccccccccccccccCCcceEecCCCCCCCccCCCCCCCCCccEEEecCCC
Q 044579 575 KLRYLHWHGYPLKTLPF-DFELENLIELRLPYSKVEQIWEGKKEASKLKSIDLCHSQHLIRMPDLSEIPNLERTNFFNCT 653 (1103)
Q Consensus 575 ~Lr~L~l~~~~l~~lp~-~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~~~ 653 (1103)
+|..|++.+|.++.+.. .-.+.+|++|+|++|.|+++. ++..++.|+.|++++|. +..++.+..+++|+.+++++|.
T Consensus 96 ~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~-i~~~~~~~~l~~L~~l~l~~n~ 173 (414)
T KOG0531|consen 96 SLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNL-ISDISGLESLKSLKLLDLSYNR 173 (414)
T ss_pred ceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCc-chhccCCccchhhhcccCCcch
Confidence 67777777777777776 346777777777777777763 45566667777777776 4555666667777777777765
Q ss_pred CCCccc-ccccCCCcccEEEccCC
Q 044579 654 NLVLVP-SSIQNFNNLSMLCFRGC 676 (1103)
Q Consensus 654 ~l~~~~-~~i~~l~~L~~L~L~~~ 676 (1103)
....-+ . +..+.+|+.+.+.+|
T Consensus 174 i~~ie~~~-~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 174 IVDIENDE-LSELISLEELDLGGN 196 (414)
T ss_pred hhhhhhhh-hhhccchHHHhccCC
Confidence 433322 1 456666666666664
No 79
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.22 E-value=2.4e-06 Score=88.05 Aligned_cols=50 Identities=26% Similarity=0.422 Sum_probs=35.8
Q ss_pred CccccchhHHHHHHhhc-ccCCCeEEEEEeecCCChhHHHHHHHHHHHhcc
Q 044579 183 GLVGLNTRIEEMKSLLC-LESHDVRIVGIWGMGGIGKTTIASVVFHQISRH 232 (1103)
Q Consensus 183 ~~vGr~~~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (1103)
.||||+++++++...+. ......+.+.|+|.+|+|||+|+++++.++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 48999999999999995 234456899999999999999999999988776
No 80
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.21 E-value=4.8e-06 Score=95.47 Aligned_cols=173 Identities=19% Similarity=0.310 Sum_probs=99.4
Q ss_pred CCCCccccchhHHHHHHhhccc-----------CCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcc
Q 044579 180 DLDGLVGLNTRIEEMKSLLCLE-----------SHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANK 248 (1103)
Q Consensus 180 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~ 248 (1103)
..+++.|++..++++.+.+... -...+-+.|+|++|+|||++|+++++.....|-.. ..
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v-----~~----- 189 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRV-----VG----- 189 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEec-----ch-----
Confidence 3457889999999988766411 12245689999999999999999999876554211 00
Q ss_pred cChHHHHHHHHHhhhCCCCccccccchH-HHHHhhcCCceEEEEeCCCCCH----------------hHHHHHhCCCCcc
Q 044579 249 MGVIHVRDEVISQVLGENLKIGTLIVPQ-NIKKRLQRVKVLIVLDDVNDEF----------------TQLESLAGGVDRF 311 (1103)
Q Consensus 249 ~~~~~~~~~ll~~l~~~~~~~~~~~~~~-~l~~~L~~k~~LlVLDdv~~~~----------------~~l~~l~~~~~~~ 311 (1103)
.. +.....+.. ..... .+...-...+.+|++|+++ .. ..+..+...+..+
T Consensus 190 ---~~----l~~~~~g~~-----~~~i~~~f~~a~~~~p~il~iDEiD-~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~ 256 (364)
T TIGR01242 190 ---SE----LVRKYIGEG-----ARLVREIFELAKEKAPSIIFIDEID-AIAAKRTDSGTSGDREVQRTLMQLLAELDGF 256 (364)
T ss_pred ---HH----HHHHhhhHH-----HHHHHHHHHHHHhcCCcEEEhhhhh-hhccccccCCCCccHHHHHHHHHHHHHhhCC
Confidence 01 111111100 00001 1111123457899999986 22 1122232222211
Q ss_pred --CCCcEEEEEeCchhh-----HhhcCcceEEEccCCChhHHHHHHHHhhhccCCCC-hhHHHHHHHHHHHhCCCh
Q 044579 312 --SPGSRIVITTRDKQV-----LDKCGVSYIYKVKRLEHDNALELFCRKAIRQNSRS-QDLLELSKEIVGYAKGNP 379 (1103)
Q Consensus 312 --~~gs~IIiTTR~~~v-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~G~P 379 (1103)
..+.+||.||..... ......+..++++..+.++..++|..++.+..... .+ ...+++.+.|..
T Consensus 257 ~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 257 DPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 246678888875432 22223467899999999999999998875543222 12 345666666654
No 81
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.20 E-value=2.4e-05 Score=83.59 Aligned_cols=175 Identities=16% Similarity=0.229 Sum_probs=96.8
Q ss_pred CCCCcc-ccchhH-HHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHHH
Q 044579 180 DLDGLV-GLNTRI-EEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRDE 257 (1103)
Q Consensus 180 ~~~~~v-Gr~~~~-~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ 257 (1103)
..++|+ |..... ..+.++.. .....+.+.|+|..|+|||+||+++++.....-....++.. ... ...
T Consensus 16 ~~d~f~~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~-~~~---------~~~ 84 (227)
T PRK08903 16 TFDNFVAGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDA-ASP---------LLA 84 (227)
T ss_pred hhcccccCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeh-HHh---------HHH
Confidence 345555 544443 33444433 22334678999999999999999999876433233444441 110 000
Q ss_pred HHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCC-CHhHHHHHhCCCCcc-CCCc-EEEEEeCchhhHh------
Q 044579 258 VISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVND-EFTQLESLAGGVDRF-SPGS-RIVITTRDKQVLD------ 328 (1103)
Q Consensus 258 ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~-~~~~l~~l~~~~~~~-~~gs-~IIiTTR~~~v~~------ 328 (1103)
+ .. ....-+||+||++. +..+.+.+...+... ..+. .+|+|++......
T Consensus 85 -~--------------------~~-~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L 142 (227)
T PRK08903 85 -F--------------------DF-DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDL 142 (227)
T ss_pred -H--------------------hh-cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHH
Confidence 0 00 11234788999962 112222332222111 2344 4666666432111
Q ss_pred --hcCcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhHHHHHHhhc
Q 044579 329 --KCGVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLALEVLGSSL 389 (1103)
Q Consensus 329 --~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~lg~~L 389 (1103)
.+.....++++++++++-.+++.+.+-..... -.++....+++...|++..+..+...+
T Consensus 143 ~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~--l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 143 RTRLGWGLVYELKPLSDADKIAALKAAAAERGLQ--LADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 22224688999999988777776654222222 123567788888999998877666544
No 82
>PRK05642 DNA replication initiation factor; Validated
Probab=98.19 E-value=3.5e-05 Score=82.17 Aligned_cols=150 Identities=17% Similarity=0.313 Sum_probs=88.7
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHHHHHHhhhCCCCccccccchHHHHHhhcCC
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRV 285 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k 285 (1103)
..+.|||..|+|||.||+++++.+..+-..++|+. ..+ +... ...+.+.+++-
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~-~~~---------~~~~-----------------~~~~~~~~~~~ 98 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP-LAE---------LLDR-----------------GPELLDNLEQY 98 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee-HHH---------HHhh-----------------hHHHHHhhhhC
Confidence 57899999999999999999987765544566665 111 1110 01223333332
Q ss_pred ceEEEEeCCCC--CHhHHH-HHhCCCCc-cCCCcEEEEEeCchhh---------HhhcCcceEEEccCCChhHHHHHHHH
Q 044579 286 KVLIVLDDVND--EFTQLE-SLAGGVDR-FSPGSRIVITTRDKQV---------LDKCGVSYIYKVKRLEHDNALELFCR 352 (1103)
Q Consensus 286 ~~LlVLDdv~~--~~~~l~-~l~~~~~~-~~~gs~IIiTTR~~~v---------~~~~~~~~~~~l~~L~~~ea~~Lf~~ 352 (1103)
. +||+||+.. ...+++ .+...++. ...|.+||+|++...- ...+.....+++++++.++-.+++..
T Consensus 99 d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ 177 (234)
T PRK05642 99 E-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQL 177 (234)
T ss_pred C-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 3 678899952 112322 23322221 2357789999875321 11223346789999999999999987
Q ss_pred hhhccCCCChhHHHHHHHHHHHhCCChhHHHHH
Q 044579 353 KAIRQNSRSQDLLELSKEIVGYAKGNPLALEVL 385 (1103)
Q Consensus 353 ~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l 385 (1103)
++....... .+++..-+++++.|..-++..+
T Consensus 178 ka~~~~~~l--~~ev~~~L~~~~~~d~r~l~~~ 208 (234)
T PRK05642 178 RASRRGLHL--TDEVGHFILTRGTRSMSALFDL 208 (234)
T ss_pred HHHHcCCCC--CHHHHHHHHHhcCCCHHHHHHH
Confidence 764432211 2356667777776665554433
No 83
>PF13173 AAA_14: AAA domain
Probab=98.18 E-value=1.1e-05 Score=77.51 Aligned_cols=119 Identities=16% Similarity=0.201 Sum_probs=72.5
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHHHHHHhhhCCCCccccccchHHHHHhhcCC
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRV 285 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k 285 (1103)
+++.|.|+.|+||||++++++.+.. .-...+++. ..+. ....... . +..+.+.+....+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~-~~~~----~~~~~~~---~------------~~~~~~~~~~~~~ 61 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYIN-FDDP----RDRRLAD---P------------DLLEYFLELIKPG 61 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-ccccceeec-cCCH----HHHHHhh---h------------hhHHHHHHhhccC
Confidence 6899999999999999999998765 223344443 1111 0000000 0 0111233333346
Q ss_pred ceEEEEeCCCCCHhHHHHHhCCCCccCCCcEEEEEeCchhhHhhc------CcceEEEccCCChhHH
Q 044579 286 KVLIVLDDVNDEFTQLESLAGGVDRFSPGSRIVITTRDKQVLDKC------GVSYIYKVKRLEHDNA 346 (1103)
Q Consensus 286 ~~LlVLDdv~~~~~~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~~------~~~~~~~l~~L~~~ea 346 (1103)
+.+++||++. ....|......+-..++..+|++|+........- +....+++.+|+..|-
T Consensus 62 ~~~i~iDEiq-~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEIQ-YLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CcEEEEehhh-hhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 8899999997 5555555444433334678999999987665321 2335788999987763
No 84
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.18 E-value=1.3e-05 Score=78.80 Aligned_cols=123 Identities=17% Similarity=0.263 Sum_probs=69.2
Q ss_pred cccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHHHHHHhhhC
Q 044579 185 VGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRDEVISQVLG 264 (1103)
Q Consensus 185 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 264 (1103)
+|++..+.++...+... ..+.+.|+|.+|+||||+|+++++.+...-...+++. ..+.... ... .......
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~-~~~~~~~---~~~-~~~~~~~-- 71 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN-ASDLLEG---LVV-AELFGHF-- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe-hhhhhhh---hHH-HHHhhhh--
Confidence 47788888888877532 3468899999999999999999998754333344443 2221111 000 0000000
Q ss_pred CCCccccccchHHHHHhhcCCceEEEEeCCCCCH-----hHHHHHhCCCCcc---CCCcEEEEEeCchh
Q 044579 265 ENLKIGTLIVPQNIKKRLQRVKVLIVLDDVNDEF-----TQLESLAGGVDRF---SPGSRIVITTRDKQ 325 (1103)
Q Consensus 265 ~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~-----~~l~~l~~~~~~~---~~gs~IIiTTR~~~ 325 (1103)
............++.++|+||++ .. ..+.......... ..+.+||+||....
T Consensus 72 --------~~~~~~~~~~~~~~~~lilDe~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 --------LVRLLFELAEKAKPGVLFIDEID-SLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred --------hHhHHHHhhccCCCeEEEEeChh-hhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 00011222234567899999997 32 1222222222221 36788888888653
No 85
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=0.0001 Score=83.19 Aligned_cols=247 Identities=17% Similarity=0.228 Sum_probs=140.4
Q ss_pred CCCCCCCccccchhHHHHHHhhcc--cCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCc--eEEEEechhhhcccChH
Q 044579 177 ESTDLDGLVGLNTRIEEMKSLLCL--ESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQG--KCFMANVREKANKMGVI 252 (1103)
Q Consensus 177 ~~~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~~~~~~~~~~~~~~~ 252 (1103)
+...++.+.+|+.+++++...|.. ......-+.|+|..|.|||+.++.+++++...... .+++.+ .......
T Consensus 12 ~~~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc----~~~~t~~ 87 (366)
T COG1474 12 EDYIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINC----LELRTPY 87 (366)
T ss_pred CCCCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEee----eeCCCHH
Confidence 344556699999999999888762 12223348999999999999999999987666443 355552 3344566
Q ss_pred HHHHHHHHhhhCCCC-ccccccchHHHHHhh--cCCceEEEEeCCCC----CHhHHHHHhCCCCccCCCcEE--EEEeCc
Q 044579 253 HVRDEVISQVLGENL-KIGTLIVPQNIKKRL--QRVKVLIVLDDVND----EFTQLESLAGGVDRFSPGSRI--VITTRD 323 (1103)
Q Consensus 253 ~~~~~ll~~l~~~~~-~~~~~~~~~~l~~~L--~~k~~LlVLDdv~~----~~~~l~~l~~~~~~~~~gs~I--IiTTR~ 323 (1103)
++..+++.++..... .....+....+.+.+ .++.+++|||+++. +.+.+-.|....... .++| |..+-+
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~ 165 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSND 165 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEecc
Confidence 777777777652221 111112222555555 35789999999962 112233333322222 3443 334444
Q ss_pred hhhHhh--------cCcceEEEccCCChhHHHHHHHHhh---hccCCCChhHHHHHHHHHHHhCC-ChhHHHHHHhhc--
Q 044579 324 KQVLDK--------CGVSYIYKVKRLEHDNALELFCRKA---IRQNSRSQDLLELSKEIVGYAKG-NPLALEVLGSSL-- 389 (1103)
Q Consensus 324 ~~v~~~--------~~~~~~~~l~~L~~~ea~~Lf~~~a---~~~~~~~~~~~~~~~~i~~~~~G-~PLal~~lg~~L-- 389 (1103)
...... .+. ..+..++-+.+|-.+.+..++ |......++..+++..++.+.+| --.|+..+-.+.
T Consensus 166 ~~~~~~ld~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~ei 244 (366)
T COG1474 166 DKFLDYLDPRVKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEI 244 (366)
T ss_pred HHHHHHhhhhhhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHH
Confidence 433221 222 336788889999999998876 34444455556666666666665 334444443221
Q ss_pred CC------CCHHHHHHHHHHhhhcCCcchhhHHHhhhcCCCHHHHHHHhhhhcc
Q 044579 390 YQ------KSKQQWKVKLQNLKLISEPNIYNVLKISYDDLNPEEKKIFLDIACF 437 (1103)
Q Consensus 390 ~~------~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f 437 (1103)
.. .+.+.-..+..... .....-....|+.++|..+..++..
T Consensus 245 Ae~~~~~~v~~~~v~~a~~~~~-------~~~~~~~~~~L~~~~ki~L~~i~~~ 291 (366)
T COG1474 245 AEREGSRKVSEDHVREAQEEIE-------RDVLEEVLKTLPLHQKIVLLAIVEL 291 (366)
T ss_pred HHhhCCCCcCHHHHHHHHHHhh-------HHHHHHHHHcCCHhHHHHHHHHHHh
Confidence 11 01111111111111 1233344678888888777666554
No 86
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=3.4e-05 Score=90.75 Aligned_cols=198 Identities=11% Similarity=0.133 Sum_probs=111.4
Q ss_pred CCCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccC-CceEEEEechhhhcccChHHHH
Q 044579 177 ESTDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHF-QGKCFMANVREKANKMGVIHVR 255 (1103)
Q Consensus 177 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~~~~~~~~~~~ 255 (1103)
.|...+++||-+.-++.|...+..+. -.+.+.++|..|+||||+|+.+++.+-..- +..--+. ....+.-...
T Consensus 11 RPqtFddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~-----~~PCG~C~sC 84 (700)
T PRK12323 11 RPRDFTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT-----AQPCGQCRAC 84 (700)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC-----CCCCcccHHH
Confidence 34456789999999999998886432 245678999999999999999998763210 0000000 0000000000
Q ss_pred HHHHHhhhCCCCcc-----ccccchHHHHHh-----hcCCceEEEEeCCCC-CHhHHHHHhCCCCccCCCcEEEEEeCc-
Q 044579 256 DEVISQVLGENLKI-----GTLIVPQNIKKR-----LQRVKVLIVLDDVND-EFTQLESLAGGVDRFSPGSRIVITTRD- 323 (1103)
Q Consensus 256 ~~ll~~l~~~~~~~-----~~~~~~~~l~~~-----L~~k~~LlVLDdv~~-~~~~l~~l~~~~~~~~~gs~IIiTTR~- 323 (1103)
..+...-..+-..+ ...+....+.+. ..++.-++|+|+++. +....+.|+..+.......++|++|.+
T Consensus 85 ~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep 164 (700)
T PRK12323 85 TEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDP 164 (700)
T ss_pred HHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCCh
Confidence 01100000000000 000111111111 134566899999973 234567777777665566665555554
Q ss_pred hhhHhhc-CcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhHH
Q 044579 324 KQVLDKC-GVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLAL 382 (1103)
Q Consensus 324 ~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal 382 (1103)
..+.... .....+.++.++.++..+.+.+.+-...... ..+..+.|++.++|.|.-.
T Consensus 165 ~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~--d~eAL~~IA~~A~Gs~RdA 222 (700)
T PRK12323 165 QKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAH--EVNALRLLAQAAQGSMRDA 222 (700)
T ss_pred HhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 4443322 2346889999999999998887664332221 2345678899999998543
No 87
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.16 E-value=8.4e-05 Score=79.41 Aligned_cols=151 Identities=13% Similarity=0.215 Sum_probs=87.4
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHHHHHHhhhCCCCccccccchHHHHHhhcC
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQR 284 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~ 284 (1103)
.+.+.|+|+.|+|||+||+++++.....-..+.|+. +... ..... .+.+.+..
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~-~~~~------~~~~~--------------------~~~~~~~~ 97 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP-LDKR------AWFVP--------------------EVLEGMEQ 97 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE-HHHH------hhhhH--------------------HHHHHhhh
Confidence 457899999999999999999997765544455554 2110 00000 11111111
Q ss_pred CceEEEEeCCCCC--HhHHHH-HhCCCCc-cCCC-cEEEEEeCchh---------hHhhcCcceEEEccCCChhHHHHHH
Q 044579 285 VKVLIVLDDVNDE--FTQLES-LAGGVDR-FSPG-SRIVITTRDKQ---------VLDKCGVSYIYKVKRLEHDNALELF 350 (1103)
Q Consensus 285 k~~LlVLDdv~~~--~~~l~~-l~~~~~~-~~~g-s~IIiTTR~~~---------v~~~~~~~~~~~l~~L~~~ea~~Lf 350 (1103)
--+|++||++.- ..+|+. +...++. ...| .++|+||+... +...+....+++++++++++-.+++
T Consensus 98 -~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l 176 (235)
T PRK08084 98 -LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQAL 176 (235)
T ss_pred -CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHH
Confidence 237899999621 122321 2111111 1233 47999998542 2233344578999999999999999
Q ss_pred HHhhhccCCCChhHHHHHHHHHHHhCCChhHHHHH
Q 044579 351 CRKAIRQNSRSQDLLELSKEIVGYAKGNPLALEVL 385 (1103)
Q Consensus 351 ~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l 385 (1103)
.+++...... -.+++..-+++++.|..-++..+
T Consensus 177 ~~~a~~~~~~--l~~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 177 QLRARLRGFE--LPEDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred HHHHHHcCCC--CCHHHHHHHHHhhcCCHHHHHHH
Confidence 8866433221 22356677777777665554433
No 88
>PRK09087 hypothetical protein; Validated
Probab=98.16 E-value=2.5e-05 Score=82.54 Aligned_cols=141 Identities=11% Similarity=0.104 Sum_probs=84.1
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHHHHHHhhhCCCCccccccchHHHHHhhcC
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQR 284 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~ 284 (1103)
.+.+.|||..|+|||+|++.++.... ..++.. ..+..+.+.. +.+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~~----------~~~~~~~~~~--------------------~~~ 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-----ALLIHP----------NEIGSDAANA--------------------AAE 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-----CEEecH----------HHcchHHHHh--------------------hhc
Confidence 45689999999999999999887532 224431 0111111111 111
Q ss_pred CceEEEEeCCCCCHhHHHHHhCCCCc-cCCCcEEEEEeCc---------hhhHhhcCcceEEEccCCChhHHHHHHHHhh
Q 044579 285 VKVLIVLDDVNDEFTQLESLAGGVDR-FSPGSRIVITTRD---------KQVLDKCGVSYIYKVKRLEHDNALELFCRKA 354 (1103)
Q Consensus 285 k~~LlVLDdv~~~~~~l~~l~~~~~~-~~~gs~IIiTTR~---------~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 354 (1103)
-+|++||++.....-+.+...++. ...|..||+|++. +++...+.....+++++++.++-.+++.+.+
T Consensus 89 --~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~ 166 (226)
T PRK09087 89 --GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLF 166 (226)
T ss_pred --CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHH
Confidence 278889996211111222222211 1357789999973 2233344556789999999999999999887
Q ss_pred hccCCCChhHHHHHHHHHHHhCCChhHHHH
Q 044579 355 IRQNSRSQDLLELSKEIVGYAKGNPLALEV 384 (1103)
Q Consensus 355 ~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 384 (1103)
-...-. -.+++..-|++++.|..-++..
T Consensus 167 ~~~~~~--l~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 167 ADRQLY--VDPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHcCCC--CCHHHHHHHHHHhhhhHHHHHH
Confidence 432211 2245667777777776665554
No 89
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=4.3e-05 Score=90.19 Aligned_cols=185 Identities=15% Similarity=0.170 Sum_probs=109.5
Q ss_pred CCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhcc---------------------CCce
Q 044579 178 STDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRH---------------------FQGK 236 (1103)
Q Consensus 178 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~ 236 (1103)
|...+++||-+.-++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+... |...
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALETQ-KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 445678999999999999888633 234567899999999999999999865321 1111
Q ss_pred EEEEechhhhcccChHHHHHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCC-CHhHHHHHhCCCCccCCCc
Q 044579 237 CFMANVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVND-EFTQLESLAGGVDRFSPGS 315 (1103)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~-~~~~l~~l~~~~~~~~~gs 315 (1103)
+.+. .....++..+ ++++..+. .....+++-++|+|+++. .....+.|...+......+
T Consensus 91 ieid----aas~~gvd~i-r~ii~~~~---------------~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v 150 (546)
T PRK14957 91 IEID----AASRTGVEET-KEILDNIQ---------------YMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYV 150 (546)
T ss_pred EEee----cccccCHHHH-HHHHHHHH---------------hhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCc
Confidence 1111 0011111111 11111110 001235667999999973 2345666666665555566
Q ss_pred EEEEEeCc-hhhHhh-cCcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChh-HHHHH
Q 044579 316 RIVITTRD-KQVLDK-CGVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPL-ALEVL 385 (1103)
Q Consensus 316 ~IIiTTR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~l 385 (1103)
.+|++|-+ ..+... ......+++.+++.++..+.+...+-..+. .-..+....|++.++|.+- |+..+
T Consensus 151 ~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi--~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 151 KFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI--NSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred eEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 66654443 334323 233478999999999988888775533222 1223556778888888663 44444
No 90
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.15 E-value=7.2e-06 Score=79.14 Aligned_cols=112 Identities=19% Similarity=0.224 Sum_probs=67.9
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhcc-----CCceEEEEechhhhcccChHHHHHHHHHhhhCCCCc-cccccchHHH
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISRH-----FQGKCFMANVREKANKMGVIHVRDEVISQVLGENLK-IGTLIVPQNI 278 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----F~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-~~~~~~~~~l 278 (1103)
.+++.|+|.+|+|||++++.+++....+ -...+|+. . ........+..+++..+...... .........+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~ 79 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN-C---PSSRTPRDFAQEILEALGLPLKSRQTSDELRSLL 79 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE-H---HHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE-e---CCCCCHHHHHHHHHHHhCccccccCCHHHHHHHH
Confidence 4689999999999999999999976543 23344554 2 22336778888888887655444 1111222355
Q ss_pred HHhhcCCc-eEEEEeCCCCCH---hHHHHHhCCCCccCCCcEEEEEeCc
Q 044579 279 KKRLQRVK-VLIVLDDVNDEF---TQLESLAGGVDRFSPGSRIVITTRD 323 (1103)
Q Consensus 279 ~~~L~~k~-~LlVLDdv~~~~---~~l~~l~~~~~~~~~gs~IIiTTR~ 323 (1103)
.+.+...+ .+||+|+++ .. ..++.+....+ ..+.++|+..+.
T Consensus 80 ~~~l~~~~~~~lviDe~~-~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 80 IDALDRRRVVLLVIDEAD-HLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHCTEEEEEEETTH-HHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHhcCCeEEEEeChH-hcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 55555444 599999997 44 23444433322 567788887775
No 91
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=2.8e-08 Score=102.41 Aligned_cols=63 Identities=21% Similarity=0.213 Sum_probs=41.4
Q ss_pred CcceEecCCCCCCCccCC--CCCCCCCccEEEecCCCCCCcccccccCCCcccEEEccCCCCCcc
Q 044579 619 SKLKSIDLCHSQHLIRMP--DLSEIPNLERTNFFNCTNLVLVPSSIQNFNNLSMLCFRGCESLRS 681 (1103)
Q Consensus 619 ~~L~~L~L~~~~~~~~~p--~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~~~~l~~ 681 (1103)
..|++|||++..+....- -++.+.+|+.|.|.|+..-..+-..+.+-.+|+.|+|++|+.++.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~ 249 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTE 249 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccch
Confidence 468889998876433221 156677788888887665555556666667777777777655543
No 92
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.14 E-value=9e-07 Score=91.51 Aligned_cols=210 Identities=18% Similarity=0.166 Sum_probs=117.4
Q ss_pred eEEEEEcCCCCCCCCCcc----ccccccccccccccccc---cccccccCCcceEecCCCCCCCccCCCC-CCCCCccEE
Q 044579 576 LRYLHWHGYPLKTLPFDF----ELENLIELRLPYSKVEQ---IWEGKKEASKLKSIDLCHSQHLIRMPDL-SEIPNLERT 647 (1103)
Q Consensus 576 Lr~L~l~~~~l~~lp~~~----~l~~L~~L~L~~n~i~~---l~~~~~~l~~L~~L~L~~~~~~~~~p~l-~~l~~L~~L 647 (1103)
+..|-+.++.+.+..... ..+.+++|||.+|.|.. +..-+.+|+.|++|+|++|++...+..+ ..+.||+.|
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l 126 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL 126 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence 345556666665554322 46788999999998874 3344688999999999999876555444 355677777
Q ss_pred EecCCCCC-CcccccccCCCcccEEEccCCCCCcccCCCCCCCCCcEEEccCCcCCCcCCCcCCCccEEecCCccceecC
Q 044579 648 NFFNCTNL-VLVPSSIQNFNNLSMLCFRGCESLRSFPRDIHFVSPVTIDFSFCVNLTEFPKISGKITELNLCDTAIEEVP 726 (1103)
Q Consensus 648 ~L~~~~~l-~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp 726 (1103)
.|.|...- .....++..+++++.|.++.| +++.+++..+.++...
T Consensus 127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N----------------------------------~~rq~n~Dd~c~e~~s 172 (418)
T KOG2982|consen 127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDN----------------------------------SLRQLNLDDNCIEDWS 172 (418)
T ss_pred EEcCCCCChhhhhhhhhcchhhhhhhhccc----------------------------------hhhhhccccccccccc
Confidence 77663211 122334455555555555543 2333333333333211
Q ss_pred ccccCCCCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCccc
Q 044579 727 SSVECLTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDF 806 (1103)
Q Consensus 727 ~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~ 806 (1103)
+.+.+|++-.|... +.++-|. --.-+|++..+.+..|++-. ......+
T Consensus 173 ------~~v~tlh~~~c~~~---------------~w~~~~~----------l~r~Fpnv~sv~v~e~PlK~-~s~ek~s 220 (418)
T KOG2982|consen 173 ------TEVLTLHQLPCLEQ---------------LWLNKNK----------LSRIFPNVNSVFVCEGPLKT-ESSEKGS 220 (418)
T ss_pred ------hhhhhhhcCCcHHH---------------HHHHHHh----------HHhhcccchheeeecCcccc-hhhcccC
Confidence 12233333222110 0111110 00123445555555554221 1112233
Q ss_pred CCCCCCCEEeCCCCCccccC--ccccCCCCCCEEeccCCcCCcccCc
Q 044579 807 CCLSSLQWLDLSGNNFESLP--SSIKQLSQLRKLDLSNCNMLLSLPE 851 (1103)
Q Consensus 807 ~~l~~L~~L~Ls~n~l~~lp--~~i~~l~~L~~L~L~~n~~l~~lp~ 851 (1103)
..+|.+..|+|+.|+|.++. ..+..++.|..|.++++++...+..
T Consensus 221 e~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~ 267 (418)
T KOG2982|consen 221 EPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG 267 (418)
T ss_pred CCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccC
Confidence 44567778888888888654 3568889999999999998877654
No 93
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.13 E-value=6e-05 Score=84.57 Aligned_cols=178 Identities=17% Similarity=0.226 Sum_probs=110.4
Q ss_pred CCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhc------cCCceEEEEechhhhcccChHHHH
Q 044579 182 DGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISR------HFQGKCFMANVREKANKMGVIHVR 255 (1103)
Q Consensus 182 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~F~~~~~~~~~~~~~~~~~~~~~~ 255 (1103)
++++|.+.-++.+...+..+ .-.+...++|+.|+||||+|+.++..+-. +.+...|.. . ......+.+ .
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~-~--~~~~i~v~~-i 78 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKP-I--NKKSIGVDD-I 78 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecc-c--cCCCCCHHH-H
Confidence 46789888888898888633 23467789999999999999999987522 223222221 0 011112222 1
Q ss_pred HHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCC-CHhHHHHHhCCCCccCCCcEEEEEeCchhhH-hh-cCc
Q 044579 256 DEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVND-EFTQLESLAGGVDRFSPGSRIVITTRDKQVL-DK-CGV 332 (1103)
Q Consensus 256 ~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~-~~~~l~~l~~~~~~~~~gs~IIiTTR~~~v~-~~-~~~ 332 (1103)
+++...+... -..+++=++|+|+++. +...++.+...+....+++.+|++|.+.+.+ .. ...
T Consensus 79 r~~~~~~~~~---------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SR 143 (313)
T PRK05564 79 RNIIEEVNKK---------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSR 143 (313)
T ss_pred HHHHHHHhcC---------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhh
Confidence 2222221110 0123455667777752 4556778888877777889999888765432 22 123
Q ss_pred ceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhHHHHH
Q 044579 333 SYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLALEVL 385 (1103)
Q Consensus 333 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l 385 (1103)
...+++.+++.++..+.+.+.. .+ . ..+.+..++.+++|.|..+...
T Consensus 144 c~~~~~~~~~~~~~~~~l~~~~-~~--~---~~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 144 CQIYKLNRLSKEEIEKFISYKY-ND--I---KEEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred ceeeeCCCcCHHHHHHHHHHHh-cC--C---CHHHHHHHHHHcCCCHHHHHHH
Confidence 4689999999999988886543 11 1 1234678899999998765443
No 94
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=0.00017 Score=84.38 Aligned_cols=188 Identities=15% Similarity=0.145 Sum_probs=107.0
Q ss_pred CCCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhcc----CC-----------------c
Q 044579 177 ESTDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRH----FQ-----------------G 235 (1103)
Q Consensus 177 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----F~-----------------~ 235 (1103)
.|...+++||.+.-.+.|...+..+. -.+.+.++|++|+||||+|+.+++.+... +. .
T Consensus 9 RP~~~~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~d 87 (472)
T PRK14962 9 RPKTFSEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMD 87 (472)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCc
Confidence 34556789999888888887775332 23567899999999999999999865321 10 0
Q ss_pred eEEEEechhhhcccChHHHHHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCC-CHhHHHHHhCCCCccCCC
Q 044579 236 KCFMANVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVND-EFTQLESLAGGVDRFSPG 314 (1103)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~-~~~~l~~l~~~~~~~~~g 314 (1103)
...+. .+...++..+ +++..... .....+++-++|+|+++. ...+.+.+...+......
T Consensus 88 v~el~----aa~~~gid~i-R~i~~~~~---------------~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~ 147 (472)
T PRK14962 88 VIELD----AASNRGIDEI-RKIRDAVG---------------YRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSH 147 (472)
T ss_pred cEEEe----CcccCCHHHH-HHHHHHHh---------------hChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCc
Confidence 11111 0011111111 11111100 001234567999999972 123455565555443444
Q ss_pred cEEEEEeCc-hhhHhhc-CcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCC-hhHHHHHHh
Q 044579 315 SRIVITTRD-KQVLDKC-GVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGN-PLALEVLGS 387 (1103)
Q Consensus 315 s~IIiTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~lg~ 387 (1103)
..+|++|.+ ..+.... .....+++.+++.++....+...+...+..- ..+....|+++++|- +.|+..+-.
T Consensus 148 vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i--~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 148 VVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEI--DREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred EEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 554444443 3333222 2346889999999999988888774433221 235667788877654 566665544
No 95
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=4.8e-05 Score=87.39 Aligned_cols=189 Identities=13% Similarity=0.113 Sum_probs=109.4
Q ss_pred CCCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCC-c--eEEEEechhhhcccChHH
Q 044579 177 ESTDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQ-G--KCFMANVREKANKMGVIH 253 (1103)
Q Consensus 177 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~-~--~~~~~~~~~~~~~~~~~~ 253 (1103)
.|...+++||.+.-++.|..++..+. -.+.+.++|+.|+||||+|+.+++.+-..-. . .|..+. .
T Consensus 13 RP~~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~--------s--- 80 (484)
T PRK14956 13 RPQFFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECT--------S--- 80 (484)
T ss_pred CCCCHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCc--------H---
Confidence 34556789999999999988886433 2346889999999999999999987543211 0 010000 0
Q ss_pred HHHHHHHhhhCCCCccc-----cccchHHHHHh-----hcCCceEEEEeCCCC-CHhHHHHHhCCCCccCCCcEEEEEeC
Q 044579 254 VRDEVISQVLGENLKIG-----TLIVPQNIKKR-----LQRVKVLIVLDDVND-EFTQLESLAGGVDRFSPGSRIVITTR 322 (1103)
Q Consensus 254 ~~~~ll~~l~~~~~~~~-----~~~~~~~l~~~-----L~~k~~LlVLDdv~~-~~~~l~~l~~~~~~~~~gs~IIiTTR 322 (1103)
...+.......-.... ..+....+.+. ..++.-++|+|+++. ..+.+++|+..+........+|.+|.
T Consensus 81 -C~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTt 159 (484)
T PRK14956 81 -CLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATT 159 (484)
T ss_pred -HHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecC
Confidence 0011100000000000 00011111111 235667999999973 34457777766655444555554554
Q ss_pred -chhhHhhc-CcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChh
Q 044579 323 -DKQVLDKC-GVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPL 380 (1103)
Q Consensus 323 -~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL 380 (1103)
...+.... .....|.+.+++.++..+.+.+.+-..+.. -..+....|++.++|.+.
T Consensus 160 e~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~--~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 160 EFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQ--YDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred ChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCChHH
Confidence 34443322 234679999999999998888776433221 123567889999999883
No 96
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=0.00018 Score=83.69 Aligned_cols=181 Identities=15% Similarity=0.210 Sum_probs=110.7
Q ss_pred CCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhcc---------------------CCce
Q 044579 178 STDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRH---------------------FQGK 236 (1103)
Q Consensus 178 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~ 236 (1103)
|...+++||.+.-++.|...+..+. -.+.+.++|+.|+||||+|+.++..+-.. +..+
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 4456789999998888888876432 24578899999999999999998754211 1112
Q ss_pred EEEEechhhhcccChHHHHHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCC-CHhHHHHHhCCCCccCCCc
Q 044579 237 CFMANVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVND-EFTQLESLAGGVDRFSPGS 315 (1103)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~-~~~~l~~l~~~~~~~~~gs 315 (1103)
+.+. .+...++.++ ++++..... .-..+++-++|+|+++. .....+.|...+....+.+
T Consensus 88 ~eid----aas~~~vddI-R~Iie~~~~---------------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v 147 (491)
T PRK14964 88 IEID----AASNTSVDDI-KVILENSCY---------------LPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHV 147 (491)
T ss_pred EEEe----cccCCCHHHH-HHHHHHHHh---------------ccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCe
Confidence 2221 1111122221 112211110 00124566899999973 2344666666666556677
Q ss_pred EEEEEeCc-hhhHhhc-CcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhH
Q 044579 316 RIVITTRD-KQVLDKC-GVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLA 381 (1103)
Q Consensus 316 ~IIiTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLa 381 (1103)
++|++|.+ ..+.... .....+++.+++.++..+.+.+.+...+..- ..+....|++.++|.+..
T Consensus 148 ~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i--~~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 148 KFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEH--DEESLKLIAENSSGSMRN 213 (491)
T ss_pred EEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHH
Confidence 76666643 3443322 3346889999999999999988775433322 235667889999988753
No 97
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.09 E-value=0.00012 Score=84.16 Aligned_cols=186 Identities=14% Similarity=0.142 Sum_probs=110.7
Q ss_pred CCCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhcc----CC-----------------c
Q 044579 177 ESTDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRH----FQ-----------------G 235 (1103)
Q Consensus 177 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----F~-----------------~ 235 (1103)
.|...+.+||.+..++.+.+.+..+. -.+.+.++|++|+||||+|+.++..+... +. .
T Consensus 9 rp~~~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~ 87 (355)
T TIGR02397 9 RPQTFEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD 87 (355)
T ss_pred CCCcHhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 34455778999999999998886432 24578899999999999999999876422 11 0
Q ss_pred eEEEEechhhhcccChHHHHHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCC-CHhHHHHHhCCCCccCCC
Q 044579 236 KCFMANVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVND-EFTQLESLAGGVDRFSPG 314 (1103)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~-~~~~l~~l~~~~~~~~~g 314 (1103)
..++.. ....+. ...++++..+.. .-..+++-++|+|+++. .......+...+....+.
T Consensus 88 ~~~~~~----~~~~~~-~~~~~l~~~~~~---------------~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~ 147 (355)
T TIGR02397 88 VIEIDA----ASNNGV-DDIREILDNVKY---------------APSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEH 147 (355)
T ss_pred EEEeec----cccCCH-HHHHHHHHHHhc---------------CcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccc
Confidence 111110 000010 011111111110 00123455889999862 123455565555544566
Q ss_pred cEEEEEeCchh-hHhhc-CcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhHHHHH
Q 044579 315 SRIVITTRDKQ-VLDKC-GVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLALEVL 385 (1103)
Q Consensus 315 s~IIiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l 385 (1103)
+.+|++|.+.. +.... .....+++++++.++..+.+...+-..+... ..+.+..+++.++|.|..+...
T Consensus 148 ~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i--~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 148 VVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKI--EDEALELIARAADGSLRDALSL 218 (355)
T ss_pred eeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCChHHHHHH
Confidence 77777765543 33222 2345788999999999999988774433222 1366788899999988655443
No 98
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.09 E-value=1.8e-05 Score=84.20 Aligned_cols=150 Identities=20% Similarity=0.355 Sum_probs=90.5
Q ss_pred CCCCCccccchhHHH---HHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHH
Q 044579 179 TDLDGLVGLNTRIEE---MKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVR 255 (1103)
Q Consensus 179 ~~~~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~ 255 (1103)
...+++||.+.-+.+ |.+++ +.+....+.+||++|.||||||+.++..-+.+- ..|+.- +....-..-.
T Consensus 135 ktL~dyvGQ~hlv~q~gllrs~i--eq~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfvel----SAt~a~t~dv 206 (554)
T KOG2028|consen 135 KTLDDYVGQSHLVGQDGLLRSLI--EQNRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVEL----SATNAKTNDV 206 (554)
T ss_pred chHHHhcchhhhcCcchHHHHHH--HcCCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEEE----eccccchHHH
Confidence 334566776655543 33333 345567788999999999999999998544331 334442 2211111222
Q ss_pred HHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCC-CHhHHHHHhCCCCccCCCcEEEE--EeCchhh---Hhh
Q 044579 256 DEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVND-EFTQLESLAGGVDRFSPGSRIVI--TTRDKQV---LDK 329 (1103)
Q Consensus 256 ~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~-~~~~l~~l~~~~~~~~~gs~IIi--TTR~~~v---~~~ 329 (1103)
+.++.+.. -...+.++|.+|.+|.|.. +..|.+.+++.. ..|.-++| ||.++.. ...
T Consensus 207 R~ife~aq--------------~~~~l~krkTilFiDEiHRFNksQQD~fLP~V---E~G~I~lIGATTENPSFqln~aL 269 (554)
T KOG2028|consen 207 RDIFEQAQ--------------NEKSLTKRKTILFIDEIHRFNKSQQDTFLPHV---ENGDITLIGATTENPSFQLNAAL 269 (554)
T ss_pred HHHHHHHH--------------HHHhhhcceeEEEeHHhhhhhhhhhhccccee---ccCceEEEecccCCCccchhHHH
Confidence 23332221 1123467899999999952 345555565553 46777766 6666643 111
Q ss_pred cCcceEEEccCCChhHHHHHHHHh
Q 044579 330 CGVSYIYKVKRLEHDNALELFCRK 353 (1103)
Q Consensus 330 ~~~~~~~~l~~L~~~ea~~Lf~~~ 353 (1103)
.....++.+++|+.++...++.+.
T Consensus 270 lSRC~VfvLekL~~n~v~~iL~ra 293 (554)
T KOG2028|consen 270 LSRCRVFVLEKLPVNAVVTILMRA 293 (554)
T ss_pred HhccceeEeccCCHHHHHHHHHHH
Confidence 234568899999999998888873
No 99
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.08 E-value=3.7e-05 Score=94.20 Aligned_cols=173 Identities=22% Similarity=0.345 Sum_probs=99.8
Q ss_pred CCCCCCccccchhHH---HHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHH
Q 044579 178 STDLDGLVGLNTRIE---EMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHV 254 (1103)
Q Consensus 178 ~~~~~~~vGr~~~~~---~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~ 254 (1103)
|...+++||.+..+. .+...+.. .....+.++|++|+||||+|+.+++.....|. .+..+ ..++..+
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~--~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~lna~-----~~~i~di 93 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKA--DRVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLNAV-----LAGVKDL 93 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHhcCcce---eehhh-----hhhhHHH
Confidence 344567899888774 45555543 34557789999999999999999988765552 12110 0111111
Q ss_pred HHHHHHhhhCCCCccccccchHHHHHhh--cCCceEEEEeCCCC-CHhHHHHHhCCCCccCCCcEEEEE--eCchh--hH
Q 044579 255 RDEVISQVLGENLKIGTLIVPQNIKKRL--QRVKVLIVLDDVND-EFTQLESLAGGVDRFSPGSRIVIT--TRDKQ--VL 327 (1103)
Q Consensus 255 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L--~~k~~LlVLDdv~~-~~~~l~~l~~~~~~~~~gs~IIiT--TR~~~--v~ 327 (1103)
++.+. ...+.+ .+++.+|||||++. +..+.+.+...+ ..|..++|+ |++.. +.
T Consensus 94 -r~~i~----------------~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~ 153 (725)
T PRK13341 94 -RAEVD----------------RAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVN 153 (725)
T ss_pred -HHHHH----------------HHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhh
Confidence 11111 111111 24578999999963 234555665443 245555553 34331 11
Q ss_pred hhc-CcceEEEccCCChhHHHHHHHHhhhcc-----CCCChhHHHHHHHHHHHhCCChh
Q 044579 328 DKC-GVSYIYKVKRLEHDNALELFCRKAIRQ-----NSRSQDLLELSKEIVGYAKGNPL 380 (1103)
Q Consensus 328 ~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~-----~~~~~~~~~~~~~i~~~~~G~PL 380 (1103)
... .....+++++|+.++..+++.+.+-.. .....-..+....|++++.|..-
T Consensus 154 ~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 154 KALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred hHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 111 123578999999999999988765310 11111224566778888888653
No 100
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.08 E-value=4.5e-06 Score=68.24 Aligned_cols=58 Identities=28% Similarity=0.353 Sum_probs=45.4
Q ss_pred CccEEecCCccceecCc-cccCCCCCCEEecCCCcccccccccccCCCCCcEEeecCCC
Q 044579 711 KITELNLCDTAIEEVPS-SVECLTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCL 768 (1103)
Q Consensus 711 ~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~ 768 (1103)
+|++|++++|.+..+|. +|.++++|++|+|++|.+....|..|.++++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 57788888888888875 66788888888888888776666777888888888888764
No 101
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.06 E-value=7.1e-05 Score=85.44 Aligned_cols=178 Identities=14% Similarity=0.136 Sum_probs=105.6
Q ss_pred CCccccchhHHHHHHhhcccCC--------CeEEEEEeecCCChhHHHHHHHHHHHhccC--------------------
Q 044579 182 DGLVGLNTRIEEMKSLLCLESH--------DVRIVGIWGMGGIGKTTIASVVFHQISRHF-------------------- 233 (1103)
Q Consensus 182 ~~~vGr~~~~~~l~~~L~~~~~--------~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-------------------- 233 (1103)
++++|-+.-++.|...+..+.. -.+.+.++|+.|+||||+|+.++..+-...
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 4678988888888888874431 246788999999999999999998653321
Q ss_pred CceEEEEechhhhcccChHHHHHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCC-CHhHHHHHhCCCCccC
Q 044579 234 QGKCFMANVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVND-EFTQLESLAGGVDRFS 312 (1103)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~-~~~~l~~l~~~~~~~~ 312 (1103)
+...++.. .....++.+ .+++...... .-..+++-++|+|+++. +......|...+....
T Consensus 85 pD~~~i~~---~~~~i~i~~-iR~l~~~~~~---------------~p~~~~~kViiIDead~m~~~aanaLLk~LEep~ 145 (394)
T PRK07940 85 PDVRVVAP---EGLSIGVDE-VRELVTIAAR---------------RPSTGRWRIVVIEDADRLTERAANALLKAVEEPP 145 (394)
T ss_pred CCEEEecc---ccccCCHHH-HHHHHHHHHh---------------CcccCCcEEEEEechhhcCHHHHHHHHHHhhcCC
Confidence 11111110 000011111 1111111110 00123455788899973 2333455655555555
Q ss_pred CCcEEEEEeCch-hhHhhc-CcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhHHHHH
Q 044579 313 PGSRIVITTRDK-QVLDKC-GVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLALEVL 385 (1103)
Q Consensus 313 ~gs~IIiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l 385 (1103)
++..+|++|.+. .+.... .....+.+++++.++..+.+.... .. ..+.+..++..++|.|.....+
T Consensus 146 ~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~---~~----~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 146 PRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD---GV----DPETARRAARASQGHIGRARRL 213 (394)
T ss_pred CCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc---CC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 677777766654 333332 234789999999999998887432 11 1345678899999999755444
No 102
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.05 E-value=8.1e-05 Score=89.26 Aligned_cols=194 Identities=13% Similarity=0.103 Sum_probs=110.6
Q ss_pred CCCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHH
Q 044579 177 ESTDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRD 256 (1103)
Q Consensus 177 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~ 256 (1103)
.|...+++||.+.-++.|...+..+. -.+.+.++|..|+||||+|+.+++.+-..... . ....+.-....
T Consensus 11 RP~~f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~----~-----~~pCg~C~~C~ 80 (647)
T PRK07994 11 RPQTFAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGI----T-----ATPCGECDNCR 80 (647)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCC----C-----CCCCCCCHHHH
Confidence 34556789999999999998886432 23557899999999999999999865332100 0 00000001111
Q ss_pred HHHHhhhCCCCcc-----ccccchHHHHHh-----hcCCceEEEEeCCCC-CHhHHHHHhCCCCccCCCcEEEEEeCch-
Q 044579 257 EVISQVLGENLKI-----GTLIVPQNIKKR-----LQRVKVLIVLDDVND-EFTQLESLAGGVDRFSPGSRIVITTRDK- 324 (1103)
Q Consensus 257 ~ll~~l~~~~~~~-----~~~~~~~~l~~~-----L~~k~~LlVLDdv~~-~~~~l~~l~~~~~~~~~gs~IIiTTR~~- 324 (1103)
++...-..+-... ...+....+.+. ..+++-++|+|+++. .....+.|+..+.......++|.+|.+.
T Consensus 81 ~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~ 160 (647)
T PRK07994 81 EIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160 (647)
T ss_pred HHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCcc
Confidence 1110000000000 000001111111 245667999999973 2345666766655555566666655544
Q ss_pred hhHhh-cCcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhHH
Q 044579 325 QVLDK-CGVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLAL 382 (1103)
Q Consensus 325 ~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal 382 (1103)
.+... ......+.+++++.++..+.+.+.+-..+.. ...+....|++.++|.+--+
T Consensus 161 kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~--~e~~aL~~Ia~~s~Gs~R~A 217 (647)
T PRK07994 161 KLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIP--FEPRALQLLARAADGSMRDA 217 (647)
T ss_pred ccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 34322 2235789999999999999998766332221 12355678899999988533
No 103
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.05 E-value=5.8e-05 Score=89.98 Aligned_cols=183 Identities=13% Similarity=0.121 Sum_probs=107.4
Q ss_pred CCCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCC---------------------c
Q 044579 177 ESTDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQ---------------------G 235 (1103)
Q Consensus 177 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~---------------------~ 235 (1103)
.|...+++||.+.-++.|..++..+. -.+.+.++|..|+||||+|+.+++.+-..-. .
T Consensus 11 RP~tFddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~D 89 (709)
T PRK08691 11 RPKTFADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVD 89 (709)
T ss_pred CCCCHHHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccc
Confidence 34556789999999999999887432 2467899999999999999999986532110 0
Q ss_pred eEEEEechhhhcccChHHHHHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCC-CHhHHHHHhCCCCccCCC
Q 044579 236 KCFMANVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVND-EFTQLESLAGGVDRFSPG 314 (1103)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~-~~~~l~~l~~~~~~~~~g 314 (1103)
.+.+. .....++. ..++++.... . .-..+++-++|+|+++. .....+.|+..+......
T Consensus 90 vlEid----aAs~~gVd-~IRelle~a~--------------~-~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~ 149 (709)
T PRK08691 90 LLEID----AASNTGID-NIREVLENAQ--------------Y-APTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEH 149 (709)
T ss_pred eEEEe----ccccCCHH-HHHHHHHHHH--------------h-hhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCC
Confidence 01110 00001110 0111111000 0 00124567899999973 122344555554444456
Q ss_pred cEEEEEeCchh-hHhh-cCcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhHH
Q 044579 315 SRIVITTRDKQ-VLDK-CGVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLAL 382 (1103)
Q Consensus 315 s~IIiTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal 382 (1103)
+++|++|.+.. +... ......+++..++.++..+.+.+.+-..+... ..+....|++.++|.+.-+
T Consensus 150 v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i--d~eAL~~Ia~~A~GslRdA 217 (709)
T PRK08691 150 VKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAY--EPPALQLLGRAAAGSMRDA 217 (709)
T ss_pred cEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc--CHHHHHHHHHHhCCCHHHH
Confidence 67777775543 2211 12335678889999999999887764433221 2356788999999988443
No 104
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.05 E-value=7.5e-05 Score=78.67 Aligned_cols=159 Identities=14% Similarity=0.240 Sum_probs=88.9
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhccCCc--eEEEEechhhhcccChHHHHHHHHHhhhCCCCccccccchHHHHHhh
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISRHFQG--KCFMANVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRL 282 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L 282 (1103)
...+.|||..|.|||.|.+++++.+....+. ++++. . ..+...+...+... ....+++.+
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~-~---------~~f~~~~~~~~~~~--------~~~~~~~~~ 95 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS-A---------EEFIREFADALRDG--------EIEEFKDRL 95 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE-H---------HHHHHHHHHHHHTT--------SHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec-H---------HHHHHHHHHHHHcc--------cchhhhhhh
Confidence 4568899999999999999999987665432 34443 1 22333333333221 112455555
Q ss_pred cCCceEEEEeCCCC--CHhHH-HHHhCCCCc-cCCCcEEEEEeCchh---------hHhhcCcceEEEccCCChhHHHHH
Q 044579 283 QRVKVLIVLDDVND--EFTQL-ESLAGGVDR-FSPGSRIVITTRDKQ---------VLDKCGVSYIYKVKRLEHDNALEL 349 (1103)
Q Consensus 283 ~~k~~LlVLDdv~~--~~~~l-~~l~~~~~~-~~~gs~IIiTTR~~~---------v~~~~~~~~~~~l~~L~~~ea~~L 349 (1103)
+. -=+|++||++. ....+ +.+...++. ...|.+||+|++... +...+...-.+++++++.++..++
T Consensus 96 ~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~i 174 (219)
T PF00308_consen 96 RS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRI 174 (219)
T ss_dssp CT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHH
T ss_pred hc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHH
Confidence 53 44788999962 11212 222221111 135779999996442 122234456899999999999999
Q ss_pred HHHhhhccCCCChhHHHHHHHHHHHhCCChhHHHH
Q 044579 350 FCRKAIRQNSRSQDLLELSKEIVGYAKGNPLALEV 384 (1103)
Q Consensus 350 f~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 384 (1103)
+.+.+-...-. -.++++.-+++.+.+..-.|..
T Consensus 175 l~~~a~~~~~~--l~~~v~~~l~~~~~~~~r~L~~ 207 (219)
T PF00308_consen 175 LQKKAKERGIE--LPEEVIEYLARRFRRDVRELEG 207 (219)
T ss_dssp HHHHHHHTT----S-HHHHHHHHHHTTSSHHHHHH
T ss_pred HHHHHHHhCCC--CcHHHHHHHHHhhcCCHHHHHH
Confidence 99988543332 2235666666666655544443
No 105
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.04 E-value=0.00015 Score=85.07 Aligned_cols=186 Identities=17% Similarity=0.220 Sum_probs=109.7
Q ss_pred CCCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCC--c-----eEEEEe-chh----
Q 044579 177 ESTDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQ--G-----KCFMAN-VRE---- 244 (1103)
Q Consensus 177 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~--~-----~~~~~~-~~~---- 244 (1103)
.|....++||-+.-++.|...+..+. -.+.+.++|+.|+||||+|+.+++.+-..-. . .|..+. ...
T Consensus 16 RP~~f~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~ 94 (507)
T PRK06645 16 RPSNFAELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNH 94 (507)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcC
Confidence 34456788999999998888765332 2467889999999999999999987632110 0 000000 000
Q ss_pred ---------hhcccChHHHHHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCC-CHhHHHHHhCCCCccCCC
Q 044579 245 ---------KANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVND-EFTQLESLAGGVDRFSPG 314 (1103)
Q Consensus 245 ---------~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~-~~~~l~~l~~~~~~~~~g 314 (1103)
.....++.++ ++++.... ..-..+++-++|+|+++. ....++.|...+....+.
T Consensus 95 ~h~Dv~eidaas~~~vd~I-r~iie~a~---------------~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~ 158 (507)
T PRK06645 95 NHPDIIEIDAASKTSVDDI-RRIIESAE---------------YKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPH 158 (507)
T ss_pred CCCcEEEeeccCCCCHHHH-HHHHHHHH---------------hccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCC
Confidence 0000111111 11111100 001235667899999983 234566776666555556
Q ss_pred cEEEE-EeCchhhHhhc-CcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhH
Q 044579 315 SRIVI-TTRDKQVLDKC-GVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLA 381 (1103)
Q Consensus 315 s~IIi-TTR~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLa 381 (1103)
+.+|+ ||+...+.... .....+++.+++.++..+.+...+-..+... ..+....|++.++|.+--
T Consensus 159 ~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~i--e~eAL~~Ia~~s~GslR~ 225 (507)
T PRK06645 159 IIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKT--DIEALRIIAYKSEGSARD 225 (507)
T ss_pred EEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHH
Confidence 66554 54544444332 2346789999999999999988875433221 235567788899997743
No 106
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.03 E-value=2e-07 Score=100.84 Aligned_cols=116 Identities=24% Similarity=0.238 Sum_probs=65.9
Q ss_pred CCCCCCEEecCCCcccccccc-c-ccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcccCC
Q 044579 731 CLTNLKELYLSRCSTLNRLST-S-ICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCC 808 (1103)
Q Consensus 731 ~l~~L~~L~L~~~~~~~~lp~-~-l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~ 808 (1103)
.+..|+.|+.++|...+..+- . ..+..+|+.|-+++|+.+.... +..--.+.+.|+.|++..|.....-.-.....+
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~-ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~ 370 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRG-FTMLGRNCPHLERLDLEECGLITDGTLASLSRN 370 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhh-hhhhhcCChhhhhhcccccceehhhhHhhhccC
Confidence 466777777777765443221 1 2355777777777776554422 111224566777777777764432211222345
Q ss_pred CCCCCEEeCCCCCcc-c-----cCccccCCCCCCEEeccCCcCCc
Q 044579 809 LSSLQWLDLSGNNFE-S-----LPSSIKQLSQLRKLDLSNCNMLL 847 (1103)
Q Consensus 809 l~~L~~L~Ls~n~l~-~-----lp~~i~~l~~L~~L~L~~n~~l~ 847 (1103)
++.|+.|.|++|.+. . +...-..+..|..|.|++|+.+.
T Consensus 371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~ 415 (483)
T KOG4341|consen 371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLIT 415 (483)
T ss_pred CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCch
Confidence 677777777776432 1 23333556677777888777543
No 107
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.02 E-value=9.9e-05 Score=83.09 Aligned_cols=198 Identities=13% Similarity=0.110 Sum_probs=114.0
Q ss_pred CCCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhcc----CCceEEEEechhhhcccChH
Q 044579 177 ESTDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRH----FQGKCFMANVREKANKMGVI 252 (1103)
Q Consensus 177 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----F~~~~~~~~~~~~~~~~~~~ 252 (1103)
.|.....++|-+.-.+.+...+..+. -...+.|+|..|+||||+|+.+++.+-.. +...... ...+-.
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~-------~~~~~c 89 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLA-------DPDPAS 89 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccC-------CCCCCC
Confidence 45567889999999999999886442 34578899999999999999999876442 1111000 000011
Q ss_pred HHHHHHHHh-------hhCC-CCcc---cc---ccchHHHHHhh-----cCCceEEEEeCCCC-CHhHHHHHhCCCCccC
Q 044579 253 HVRDEVISQ-------VLGE-NLKI---GT---LIVPQNIKKRL-----QRVKVLIVLDDVND-EFTQLESLAGGVDRFS 312 (1103)
Q Consensus 253 ~~~~~ll~~-------l~~~-~~~~---~~---~~~~~~l~~~L-----~~k~~LlVLDdv~~-~~~~l~~l~~~~~~~~ 312 (1103)
...+.+... +... +... .. .+....+.+.+ .+++-++|+|+++. +....+.+...+....
T Consensus 90 ~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp 169 (351)
T PRK09112 90 PVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPP 169 (351)
T ss_pred HHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCC
Confidence 111222111 0000 0000 00 11111333333 34567899999973 3344555655555444
Q ss_pred CCcEEEEEe-CchhhHhhc-CcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhHHHHHH
Q 044579 313 PGSRIVITT-RDKQVLDKC-GVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLALEVLG 386 (1103)
Q Consensus 313 ~gs~IIiTT-R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~lg 386 (1103)
....+|++| +...+.... .....+.+.+++.++..+++...+.... -..+....+++.++|.|.....+.
T Consensus 170 ~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~----~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 170 ARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG----SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred CCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 555555544 433333222 2346899999999999999987432211 113456789999999998655443
No 108
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=0.00019 Score=86.00 Aligned_cols=194 Identities=14% Similarity=0.183 Sum_probs=108.7
Q ss_pred CCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccC----CceEEEEechhhhcccChHH
Q 044579 178 STDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHF----QGKCFMANVREKANKMGVIH 253 (1103)
Q Consensus 178 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F----~~~~~~~~~~~~~~~~~~~~ 253 (1103)
|...+++||-+.-++.|..++..+. -.+.+.++|..|+||||+|+.+++.+-..- .+.. ....+.-.
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~--------~~pCg~C~ 82 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGIT--------ATPCGVCQ 82 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCC--------CCCCCccH
Confidence 4456789998888888988886432 346778999999999999999988653210 0000 00000001
Q ss_pred HHHHHHHhhhCCCCcc-----ccccchHHHHHh-----hcCCceEEEEeCCCC-CHhHHHHHhCCCCccCCCcEEEEEeC
Q 044579 254 VRDEVISQVLGENLKI-----GTLIVPQNIKKR-----LQRVKVLIVLDDVND-EFTQLESLAGGVDRFSPGSRIVITTR 322 (1103)
Q Consensus 254 ~~~~ll~~l~~~~~~~-----~~~~~~~~l~~~-----L~~k~~LlVLDdv~~-~~~~l~~l~~~~~~~~~gs~IIiTTR 322 (1103)
....+-..-..+-... ...+....+.+. ..++.-++|+|+|+. .....+.+...+.......++|++|.
T Consensus 83 ~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Tt 162 (618)
T PRK14951 83 ACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATT 162 (618)
T ss_pred HHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEEC
Confidence 1111100000000000 000001111111 123455889999973 23456667766665555666665554
Q ss_pred c-hhhHhh-cCcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhHH
Q 044579 323 D-KQVLDK-CGVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLAL 382 (1103)
Q Consensus 323 ~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal 382 (1103)
+ ..+... ......++++.++.++..+.+.+.+-..+... ..+....|++.++|.+.-+
T Consensus 163 d~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~i--e~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 163 DPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPA--EPQALRLLARAARGSMRDA 222 (618)
T ss_pred CchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 4 333322 23347899999999999999987764433222 2356678888898877443
No 109
>PF14516 AAA_35: AAA-like domain
Probab=97.99 E-value=0.0011 Score=74.81 Aligned_cols=278 Identities=14% Similarity=0.166 Sum_probs=142.7
Q ss_pred CCCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhc--ccChHHH
Q 044579 177 ESTDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKAN--KMGVIHV 254 (1103)
Q Consensus 177 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~--~~~~~~~ 254 (1103)
.+.+.+..|.|...-+++.+.+.. ....+.|.|+-.+|||+|..++.+.....=-.++++ ++..... ..+....
T Consensus 6 ~~~~~~~Yi~R~~~e~~~~~~i~~---~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~i-d~~~~~~~~~~~~~~f 81 (331)
T PF14516_consen 6 LPLDSPFYIERPPAEQECYQEIVQ---PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYI-DLQQLGSAIFSDLEQF 81 (331)
T ss_pred CCCCCCcccCchHHHHHHHHHHhc---CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEE-EeecCCCcccCCHHHH
Confidence 455667788998444555444432 124899999999999999999998876542223344 3443222 1244444
Q ss_pred HHHHHHhhhCC---CCc--------cccccchH-HHHHhh---cCCceEEEEeCCCCCHh--H-HHHHhCCCC-ccC---
Q 044579 255 RDEVISQVLGE---NLK--------IGTLIVPQ-NIKKRL---QRVKVLIVLDDVNDEFT--Q-LESLAGGVD-RFS--- 312 (1103)
Q Consensus 255 ~~~ll~~l~~~---~~~--------~~~~~~~~-~l~~~L---~~k~~LlVLDdv~~~~~--~-l~~l~~~~~-~~~--- 312 (1103)
.+.+...+... ... .+...... .+.+.+ .+++++|++|+|+.-.+ . ...+.+.+. |..
T Consensus 82 ~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~ 161 (331)
T PF14516_consen 82 LRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRK 161 (331)
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcc
Confidence 44444333211 110 11111111 344332 26899999999973111 1 112211110 000
Q ss_pred ----CCc--EEEEEeCchhhH-h----hcCcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhH
Q 044579 313 ----PGS--RIVITTRDKQVL-D----KCGVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLA 381 (1103)
Q Consensus 313 ----~gs--~IIiTTR~~~v~-~----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLa 381 (1103)
... -|++.+...... . .+.+...+++++++.+|...|...+... . . ....+++...++|+|.-
T Consensus 162 ~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~-~---~~~~~~l~~~tgGhP~L 235 (331)
T PF14516_consen 162 NNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE--F-S---QEQLEQLMDWTGGHPYL 235 (331)
T ss_pred cCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc--C-C---HHHHHHHHHHHCCCHHH
Confidence 111 122222111111 1 1234457899999999999999876422 1 1 12388999999999999
Q ss_pred HHHHHhhcCCC--CHHHHHHHHHHhhhcCCcchhhHHHhhhcCC--CHHHHHHHhhhhccCCCCCHHHHHHHhcCCCchH
Q 044579 382 LEVLGSSLYQK--SKQQWKVKLQNLKLISEPNIYNVLKISYDDL--NPEEKKIFLDIACFFKGEDADFVTRIQDDPTSLD 457 (1103)
Q Consensus 382 l~~lg~~L~~~--~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L--~~~~k~~fl~~a~f~~~~~~~~~~~~~~~~~~l~ 457 (1103)
+..++..+... +.++ .++.-.... .....-++.-.+.| .++.++++..+-.-......+ .....
T Consensus 236 v~~~~~~l~~~~~~~~~---l~~~a~~~~-~~~~~hL~~l~~~L~~~~~L~~~~~~il~~~~~~~~~--------~~~~~ 303 (331)
T PF14516_consen 236 VQKACYLLVEEQITLEQ---LLEEAITDN-GIYNDHLDRLLDRLQQNPELLEAYQQILFSGEPVDLD--------SDDIY 303 (331)
T ss_pred HHHHHHHHHHccCcHHH---HHHHHHHhc-ccHHHHHHHHHHHHccCHHHHHHHHHHHhCCCCcccC--------hHHHH
Confidence 99999988552 2222 222111100 11111222222333 334445554432211111111 23456
Q ss_pred HHhhccCeeEcCCCeEEech
Q 044579 458 NIVDKSLITISDENRLQMHD 477 (1103)
Q Consensus 458 ~L~~~sLi~~~~~~~~~mHd 477 (1103)
.|...|||... ++.+....
T Consensus 304 ~L~~~GLV~~~-~~~~~~~n 322 (331)
T PF14516_consen 304 KLESLGLVKRD-GNQLEVRN 322 (331)
T ss_pred HHHHCCeEEEe-CCEEEEEc
Confidence 78899999988 66665543
No 110
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.98 E-value=5.2e-05 Score=87.27 Aligned_cols=154 Identities=21% Similarity=0.331 Sum_probs=89.6
Q ss_pred CCCCccccchhHHHHHHhhcc-----------cCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcc
Q 044579 180 DLDGLVGLNTRIEEMKSLLCL-----------ESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANK 248 (1103)
Q Consensus 180 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~ 248 (1103)
..+++.|+++.++++.+.+.. +-...+-|.++|++|+|||++|++++++....|- .+. ..
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i---~v~-~~----- 199 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFI---RVV-GS----- 199 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEE---Eee-hH-----
Confidence 345788999999999876531 1133567899999999999999999987654321 111 10
Q ss_pred cChHHHHHHHHHhhhCCCCccccccchH-HHHHhhcCCceEEEEeCCCCCH-------------hH---HHHHhCCCCcc
Q 044579 249 MGVIHVRDEVISQVLGENLKIGTLIVPQ-NIKKRLQRVKVLIVLDDVNDEF-------------TQ---LESLAGGVDRF 311 (1103)
Q Consensus 249 ~~~~~~~~~ll~~l~~~~~~~~~~~~~~-~l~~~L~~k~~LlVLDdv~~~~-------------~~---l~~l~~~~~~~ 311 (1103)
++.....+... .... .+...-...+.+|++||++ .. +. +..+...+..+
T Consensus 200 --------~l~~~~~g~~~-----~~i~~~f~~a~~~~p~IlfiDEiD-~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~ 265 (389)
T PRK03992 200 --------ELVQKFIGEGA-----RLVRELFELAREKAPSIIFIDEID-AIAAKRTDSGTSGDREVQRTLMQLLAEMDGF 265 (389)
T ss_pred --------HHhHhhccchH-----HHHHHHHHHHHhcCCeEEEEechh-hhhcccccCCCCccHHHHHHHHHHHHhcccc
Confidence 11111111100 0001 1111123457899999997 32 11 22222222211
Q ss_pred --CCCcEEEEEeCchhhHhh-----cCcceEEEccCCChhHHHHHHHHhhhc
Q 044579 312 --SPGSRIVITTRDKQVLDK-----CGVSYIYKVKRLEHDNALELFCRKAIR 356 (1103)
Q Consensus 312 --~~gs~IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 356 (1103)
..+.+||.||.....+.. ...+..++++..+.++..++|..+..+
T Consensus 266 ~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~ 317 (389)
T PRK03992 266 DPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRK 317 (389)
T ss_pred CCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhcc
Confidence 235677778765433221 134568999999999999999987744
No 111
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.95 E-value=0.00035 Score=82.76 Aligned_cols=182 Identities=12% Similarity=0.108 Sum_probs=108.3
Q ss_pred CCCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhcc---------------------CCc
Q 044579 177 ESTDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRH---------------------FQG 235 (1103)
Q Consensus 177 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~ 235 (1103)
.|...+++||-+.-++.|..++..+. -.+.+.++|+.|+||||+|+.+++.+-.. |..
T Consensus 11 RP~~f~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d 89 (509)
T PRK14958 11 RPRCFQEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPD 89 (509)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCce
Confidence 34556789999999999999986432 24567899999999999999999865221 111
Q ss_pred eEEEEechhhhcccChHHHHHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCC-CHhHHHHHhCCCCccCCC
Q 044579 236 KCFMANVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVND-EFTQLESLAGGVDRFSPG 314 (1103)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~-~~~~l~~l~~~~~~~~~g 314 (1103)
...+. .....++..+ ++++..+.. .-..++.-++|+|+|+. .....+.+...+....+.
T Consensus 90 ~~eid----aas~~~v~~i-R~l~~~~~~---------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~ 149 (509)
T PRK14958 90 LFEVD----AASRTKVEDT-RELLDNIPY---------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSH 149 (509)
T ss_pred EEEEc----ccccCCHHHH-HHHHHHHhh---------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCC
Confidence 11111 0111122221 122221110 01124556889999973 234566666666555567
Q ss_pred cEEEEEeCch-hhHhhc-CcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhH
Q 044579 315 SRIVITTRDK-QVLDKC-GVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLA 381 (1103)
Q Consensus 315 s~IIiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLa 381 (1103)
+++|++|.+. .+.... .....+++++++.++..+.+...+-..+... ..+....|++.++|.+.-
T Consensus 150 ~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~--~~~al~~ia~~s~GslR~ 216 (509)
T PRK14958 150 VKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEF--ENAALDLLARAANGSVRD 216 (509)
T ss_pred eEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHHH
Confidence 7777666544 333221 2235788999999988877766653332221 224567788888888743
No 112
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.94 E-value=0.00026 Score=73.00 Aligned_cols=90 Identities=14% Similarity=0.254 Sum_probs=61.6
Q ss_pred CCceEEEEeCCCC-CHhHHHHHhCCCCccCCCcEEEEEeCch-hhHhhc-CcceEEEccCCChhHHHHHHHHhhhccCCC
Q 044579 284 RVKVLIVLDDVND-EFTQLESLAGGVDRFSPGSRIVITTRDK-QVLDKC-GVSYIYKVKRLEHDNALELFCRKAIRQNSR 360 (1103)
Q Consensus 284 ~k~~LlVLDdv~~-~~~~l~~l~~~~~~~~~gs~IIiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 360 (1103)
+.+-++|+||++. ..+..+.+...+....+.+.+|++|++. .+.... .....+++.+++.++..+.+.+.. .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~g----i- 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQG----I- 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHcC----C-
Confidence 4566899999973 2334566666666556677777777654 232222 234689999999999999987761 1
Q ss_pred ChhHHHHHHHHHHHhCCChhH
Q 044579 361 SQDLLELSKEIVGYAKGNPLA 381 (1103)
Q Consensus 361 ~~~~~~~~~~i~~~~~G~PLa 381 (1103)
..+.+..+++.++|.|..
T Consensus 170 ---~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 170 ---SEEAAELLLALAGGSPGA 187 (188)
T ss_pred ---CHHHHHHHHHHcCCCccc
Confidence 135688999999998853
No 113
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.94 E-value=0.00029 Score=73.41 Aligned_cols=260 Identities=15% Similarity=0.228 Sum_probs=141.5
Q ss_pred CCCCCCccccchhHHHHHHhhcc---cCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHH
Q 044579 178 STDLDGLVGLNTRIEEMKSLLCL---ESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHV 254 (1103)
Q Consensus 178 ~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~ 254 (1103)
|....+|||.++-.++|.-.+.. .....-.|.++|++|.||||||.-+++.+...+... + . ....-
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~t---------s-G-p~leK 90 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKIT---------S-G-PALEK 90 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEec---------c-c-ccccC
Confidence 45567899999888888766652 233466899999999999999999999876554311 0 0 00000
Q ss_pred HHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCCCHhHHHHHh-CCCCc--------cCCCcE---------
Q 044579 255 RDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVNDEFTQLESLA-GGVDR--------FSPGSR--------- 316 (1103)
Q Consensus 255 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~~l~~l~-~~~~~--------~~~gs~--------- 316 (1103)
..+++ .+-.-|.... ++.+|.+..-....+.++ +.... .++++|
T Consensus 91 ~gDla-----------------aiLt~Le~~D-VLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppF 152 (332)
T COG2255 91 PGDLA-----------------AILTNLEEGD-VLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPF 152 (332)
T ss_pred hhhHH-----------------HHHhcCCcCC-eEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCe
Confidence 01111 1111122222 345566642112222211 11111 134444
Q ss_pred --EEEEeCchhhHhhc--CcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhHHHHHHhhcCCC
Q 044579 317 --IVITTRDKQVLDKC--GVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLALEVLGSSLYQK 392 (1103)
Q Consensus 317 --IIiTTR~~~v~~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~lg~~L~~~ 392 (1103)
|=-|||.-.+.... ...-+.+++-.+.+|-.+...+.|..-+.. -.++.+.+|+++..|-|--..-+-+..+
T Consensus 153 TLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~--i~~~~a~eIA~rSRGTPRIAnRLLrRVR-- 228 (332)
T COG2255 153 TLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIE--IDEEAALEIARRSRGTPRIANRLLRRVR-- 228 (332)
T ss_pred eEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCC--CChHHHHHHHHhccCCcHHHHHHHHHHH--
Confidence 34588865443221 223467888899999999998887332221 2236788999999999965443333221
Q ss_pred CHHHHHHHHHH--hhhcCCcchhhHHHhhhcCCCHHHHHHHhhhhccCCCC--CHHHHHHHhcC-CCch-----HHHhhc
Q 044579 393 SKQQWKVKLQN--LKLISEPNIYNVLKISYDDLNPEEKKIFLDIACFFKGE--DADFVTRIQDD-PTSL-----DNIVDK 462 (1103)
Q Consensus 393 ~~~~w~~~l~~--l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~--~~~~~~~~~~~-~~~l-----~~L~~~ 462 (1103)
++..+... +...........|.+-=.+|+...++.+..+.-.+.|. ..+.+...+.. ...+ --|++.
T Consensus 229 ---Dfa~V~~~~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~EPyLiq~ 305 (332)
T COG2255 229 ---DFAQVKGDGDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIEPYLIQQ 305 (332)
T ss_pred ---HHHHHhcCCcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHHHHHhHHHHHh
Confidence 11111100 00000111233444444577888888887776666443 34555444443 2222 237888
Q ss_pred cCeeEcCCCeE
Q 044579 463 SLITISDENRL 473 (1103)
Q Consensus 463 sLi~~~~~~~~ 473 (1103)
++|+....++.
T Consensus 306 gfi~RTpRGR~ 316 (332)
T COG2255 306 GFIQRTPRGRI 316 (332)
T ss_pred chhhhCCCcce
Confidence 88887765554
No 114
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.93 E-value=2.4e-07 Score=100.33 Aligned_cols=249 Identities=20% Similarity=0.267 Sum_probs=145.8
Q ss_pred cccccccccccc---cccccccccCCcceEecCCCCCCCccCCC--C-CCCCCccEEEecCCCCCCccc--ccccCCCcc
Q 044579 597 NLIELRLPYSKV---EQIWEGKKEASKLKSIDLCHSQHLIRMPD--L-SEIPNLERTNFFNCTNLVLVP--SSIQNFNNL 668 (1103)
Q Consensus 597 ~L~~L~L~~n~i---~~l~~~~~~l~~L~~L~L~~~~~~~~~p~--l-~~l~~L~~L~L~~~~~l~~~~--~~i~~l~~L 668 (1103)
.|+.|.++++.- ..+-....+.+++++|++.+|..+++..- + ..+++|++|++..|..++... .-...+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 466666666542 23334456677777777777764433221 2 346777777777776665432 112356677
Q ss_pred cEEEccCCCCCcccCCCC-----CCCCCcEEEccCCcCCCcCCCcCCCccEEecCCccceecCccccCCCCCCEEecCCC
Q 044579 669 SMLCFRGCESLRSFPRDI-----HFVSPVTIDFSFCVNLTEFPKISGKITELNLCDTAIEEVPSSVECLTNLKELYLSRC 743 (1103)
Q Consensus 669 ~~L~L~~~~~l~~lp~~~-----~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~ 743 (1103)
++|++++|..+.. .++ +...++.+.+.||..++ ++.+-..-..+.-+..+++..|
T Consensus 219 ~~lNlSwc~qi~~--~gv~~~~rG~~~l~~~~~kGC~e~~------------------le~l~~~~~~~~~i~~lnl~~c 278 (483)
T KOG4341|consen 219 KYLNLSWCPQISG--NGVQALQRGCKELEKLSLKGCLELE------------------LEALLKAAAYCLEILKLNLQHC 278 (483)
T ss_pred HHhhhccCchhhc--CcchHHhccchhhhhhhhccccccc------------------HHHHHHHhccChHhhccchhhh
Confidence 7777777765554 111 22223333333432221 0011111134455677777788
Q ss_pred ccccccc--ccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCC
Q 044579 744 STLNRLS--TSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNN 821 (1103)
Q Consensus 744 ~~~~~lp--~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~ 821 (1103)
...+... ..-..+..|+.|..++|...... .+-.-..+..+|+.|-+++|+.....-...--.+.+.|+.|++.++.
T Consensus 279 ~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~-~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~ 357 (483)
T KOG4341|consen 279 NQLTDEDLWLIACGCHALQVLCYSSCTDITDE-VLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECG 357 (483)
T ss_pred ccccchHHHHHhhhhhHhhhhcccCCCCCchH-HHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccc
Confidence 6554332 11235788999999999764431 11122356789999999999876544323334568899999999985
Q ss_pred cc---ccCccccCCCCCCEEeccCCcCCccc--------Cccccccccceeccccc
Q 044579 822 FE---SLPSSIKQLSQLRKLDLSNCNMLLSL--------PELPLFLEDLEARNCKR 866 (1103)
Q Consensus 822 l~---~lp~~i~~l~~L~~L~L~~n~~l~~l--------p~~~~~L~~L~~~~c~~ 866 (1103)
.. ++-.--.+++.|+.|.|++|...... ......|..|.+.+|+.
T Consensus 358 ~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~ 413 (483)
T KOG4341|consen 358 LITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPL 413 (483)
T ss_pred eehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCC
Confidence 54 34444578899999999999876554 12233455555556544
No 115
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.93 E-value=9.7e-05 Score=87.25 Aligned_cols=197 Identities=14% Similarity=0.117 Sum_probs=107.0
Q ss_pred CCCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHH
Q 044579 177 ESTDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRD 256 (1103)
Q Consensus 177 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~ 256 (1103)
.|....+++|.+.-++.+...+..+. -.+.+.++|+.|+||||+|+.+++.+...- |.. ....+-....+
T Consensus 11 RP~~F~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~----~~~-----~~~Cg~C~sCr 80 (605)
T PRK05896 11 RPHNFKQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAKAINCLN----PKD-----GDCCNSCSVCE 80 (605)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCCC----CCC-----CCCCcccHHHH
Confidence 45556789999999999998886432 246788999999999999999998763211 000 00000000011
Q ss_pred HHHHhhhCCCCccc-----cccchHHHHHh-----hcCCceEEEEeCCCC-CHhHHHHHhCCCCccCCCcEEEEEe-Cch
Q 044579 257 EVISQVLGENLKIG-----TLIVPQNIKKR-----LQRVKVLIVLDDVND-EFTQLESLAGGVDRFSPGSRIVITT-RDK 324 (1103)
Q Consensus 257 ~ll~~l~~~~~~~~-----~~~~~~~l~~~-----L~~k~~LlVLDdv~~-~~~~l~~l~~~~~~~~~gs~IIiTT-R~~ 324 (1103)
.+.......-.... ..+....+.+. ..+++=++|+|+++. .......|...+....+...+|++| ...
T Consensus 81 ~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~ 160 (605)
T PRK05896 81 SINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQ 160 (605)
T ss_pred HHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChH
Confidence 11000000000000 00000111111 112334699999973 2344556655544444556665555 433
Q ss_pred hhHhh-cCcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChh-HHHHH
Q 044579 325 QVLDK-CGVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPL-ALEVL 385 (1103)
Q Consensus 325 ~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~l 385 (1103)
.+... ......+++.+++.++....+...+-..+... ..+.+..+++.++|.+. |+..+
T Consensus 161 KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~I--s~eal~~La~lS~GdlR~AlnlL 221 (605)
T PRK05896 161 KIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKI--EDNAIDKIADLADGSLRDGLSIL 221 (605)
T ss_pred hhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHHHHHHHH
Confidence 33322 22346789999999999988887664332211 13456788888988664 44433
No 116
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.91 E-value=0.00018 Score=84.11 Aligned_cols=164 Identities=13% Similarity=0.186 Sum_probs=97.2
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHhccCC--ceEEEEechhhhcccChHHHHHHHHHhhhCCCCccccccchHHHHHhhc
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQISRHFQ--GKCFMANVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQ 283 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~--~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 283 (1103)
..+.|+|..|.|||+|++++++.+..... .++++. ...+...+...+.... .....+++.++
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~----------~~~f~~~~~~~l~~~~------~~~~~~~~~~~ 205 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS----------GDEFARKAVDILQKTH------KEIEQFKNEIC 205 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHHHHHHHhh------hHHHHHHHHhc
Confidence 46889999999999999999997654332 233443 1233344433332110 01123444444
Q ss_pred CCceEEEEeCCCCC---HhHHHHHhCCCCc-cCCCcEEEEEeCch-h--------hHhhcCcceEEEccCCChhHHHHHH
Q 044579 284 RVKVLIVLDDVNDE---FTQLESLAGGVDR-FSPGSRIVITTRDK-Q--------VLDKCGVSYIYKVKRLEHDNALELF 350 (1103)
Q Consensus 284 ~k~~LlVLDdv~~~---~~~l~~l~~~~~~-~~~gs~IIiTTR~~-~--------v~~~~~~~~~~~l~~L~~~ea~~Lf 350 (1103)
. .-+||+||+..- ....+.+...++. ...|..||+|+... . +...+...-.+++++++.++..+++
T Consensus 206 ~-~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL 284 (450)
T PRK14087 206 Q-NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAII 284 (450)
T ss_pred c-CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHH
Confidence 3 457889999521 1122333222221 13455788887633 1 2222334457889999999999999
Q ss_pred HHhhhccCCCChhHHHHHHHHHHHhCCChhHHHHHH
Q 044579 351 CRKAIRQNSRSQDLLELSKEIVGYAKGNPLALEVLG 386 (1103)
Q Consensus 351 ~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~lg 386 (1103)
.+++-.......-.++...-|++.+.|.|-.+.-+.
T Consensus 285 ~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 285 KKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 988743221112235778889999999997766554
No 117
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.90 E-value=0.00028 Score=81.73 Aligned_cols=199 Identities=10% Similarity=0.097 Sum_probs=108.7
Q ss_pred CCCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhcc--CCceEEEEechhhhcccChHHH
Q 044579 177 ESTDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRH--FQGKCFMANVREKANKMGVIHV 254 (1103)
Q Consensus 177 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--F~~~~~~~~~~~~~~~~~~~~~ 254 (1103)
.|...++++|.+.-++.|..++..+. -...+.++|+.|+||||+|+.+++.+... +....|..... ...+.-..
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~---~~c~~c~~ 86 (397)
T PRK14955 11 RPKKFADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVT---EPCGECES 86 (397)
T ss_pred CCCcHhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCC---CCCCCCHH
Confidence 34456789999988888888886332 23458899999999999999999876431 11000110000 00000001
Q ss_pred HHHHHHhhhCC-----CCccccccchHHHHHhh-----cCCceEEEEeCCCC-CHhHHHHHhCCCCccCCCcEEEEEe-C
Q 044579 255 RDEVISQVLGE-----NLKIGTLIVPQNIKKRL-----QRVKVLIVLDDVND-EFTQLESLAGGVDRFSPGSRIVITT-R 322 (1103)
Q Consensus 255 ~~~ll~~l~~~-----~~~~~~~~~~~~l~~~L-----~~k~~LlVLDdv~~-~~~~l~~l~~~~~~~~~gs~IIiTT-R 322 (1103)
-+.+....... .......+....+.+.+ .+++-++|+|+++. ....++.+...+....+.+.+|++| +
T Consensus 87 c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~ 166 (397)
T PRK14955 87 CRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTE 166 (397)
T ss_pred HHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 11111100000 00000001111222222 24456889999973 2235666666555555667766555 4
Q ss_pred chhhHhhc-CcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhH
Q 044579 323 DKQVLDKC-GVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLA 381 (1103)
Q Consensus 323 ~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLa 381 (1103)
...+.... .....+++.+++.++..+.+...+-..... -..+.+..+++.++|.+--
T Consensus 167 ~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~--i~~~al~~l~~~s~g~lr~ 224 (397)
T PRK14955 167 LHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGIS--VDADALQLIGRKAQGSMRD 224 (397)
T ss_pred hHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 34443322 223578899999999988887766332211 2236678899999998853
No 118
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.87 E-value=1.3e-05 Score=65.57 Aligned_cols=60 Identities=30% Similarity=0.283 Sum_probs=33.4
Q ss_pred CCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCC
Q 044579 733 TNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCS 795 (1103)
Q Consensus 733 ~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~ 795 (1103)
++|++|++++|++....+..|.++++|++|++++|..... -|..+.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i---~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSI---PPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEE---ETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCcc---CHHHHcCCCCCCEEeCcCCc
Confidence 4566777777655544445566666666666666432211 23345555555555555554
No 119
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.86 E-value=2.8e-07 Score=105.71 Aligned_cols=125 Identities=24% Similarity=0.137 Sum_probs=91.2
Q ss_pred CccEEecCCccceecCccccCCCCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeee
Q 044579 711 KITELNLCDTAIEEVPSSVECLTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLV 790 (1103)
Q Consensus 711 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~ 790 (1103)
.|...+.+.|.+..+..++.-++.|+.|+|++|++...- .+..++.|++|||+.|.. ..+|..-..-..|+.|.
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L----~~vp~l~~~gc~L~~L~ 238 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCL----RHVPQLSMVGCKLQLLN 238 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchh----ccccccchhhhhheeee
Confidence 466777788888888888888999999999999876543 577889999999998643 22443222223488999
Q ss_pred ccCCCCCCCCCCCcccCCCCCCCEEeCCCCCccccC--ccccCCCCCCEEeccCCcC
Q 044579 791 LVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESLP--SSIKQLSQLRKLDLSNCNM 845 (1103)
Q Consensus 791 L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~lp--~~i~~l~~L~~L~L~~n~~ 845 (1103)
|+||.+.. + .++.+|.+|+.||+++|-|.... ..+..|..|+.|+|.+|++
T Consensus 239 lrnN~l~t-L---~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 239 LRNNALTT-L---RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ecccHHHh-h---hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 98887443 2 34567889999999998666332 2356678888999999885
No 120
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.86 E-value=0.00072 Score=81.33 Aligned_cols=200 Identities=15% Similarity=0.146 Sum_probs=111.6
Q ss_pred CCCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHH
Q 044579 177 ESTDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRD 256 (1103)
Q Consensus 177 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~ 256 (1103)
.|....++||.+.-++.|...+..+. -...+.++|+.|+||||+|+.+++.+-......- ........+.-.-.+
T Consensus 19 RP~~f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~----~~~~~~~cg~c~~C~ 93 (598)
T PRK09111 19 RPQTFDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGD----GGPTIDLCGVGEHCQ 93 (598)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCcccc----CCCccccCcccHHHH
Confidence 34556789999999999999886432 2457889999999999999999987643221000 000000000000001
Q ss_pred HHHHhhhCCCCcc-----ccccchHHHHHhh-----cCCceEEEEeCCCC-CHhHHHHHhCCCCccCCCcEEEEEe-Cch
Q 044579 257 EVISQVLGENLKI-----GTLIVPQNIKKRL-----QRVKVLIVLDDVND-EFTQLESLAGGVDRFSPGSRIVITT-RDK 324 (1103)
Q Consensus 257 ~ll~~l~~~~~~~-----~~~~~~~~l~~~L-----~~k~~LlVLDdv~~-~~~~l~~l~~~~~~~~~gs~IIiTT-R~~ 324 (1103)
.+......+-... ...+....+.+.+ .+++-++|+|+++. .....+.|...+....+.+.+|++| ...
T Consensus 94 ~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~ 173 (598)
T PRK09111 94 AIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIR 173 (598)
T ss_pred HHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChh
Confidence 1111100000000 0000111111111 23455789999973 2234666666655555667666555 444
Q ss_pred hhHhhc-CcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhHHH
Q 044579 325 QVLDKC-GVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLALE 383 (1103)
Q Consensus 325 ~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 383 (1103)
.+.... .....+++..++.++..+.+.+.+-...... ..+....|++.++|.+.-+.
T Consensus 174 kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i--~~eAl~lIa~~a~Gdlr~al 231 (598)
T PRK09111 174 KVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEV--EDEALALIARAAEGSVRDGL 231 (598)
T ss_pred hhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHH
Confidence 443332 2346889999999999999988764433222 23567888999999885443
No 121
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.86 E-value=0.00039 Score=82.74 Aligned_cols=199 Identities=13% Similarity=0.114 Sum_probs=111.2
Q ss_pred CCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHHH
Q 044579 178 STDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRDE 257 (1103)
Q Consensus 178 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ 257 (1103)
|...+++||-+.-++.|...+..+ .-...+.++|+.|+||||+|+.+++.+-...... ....+.-...+.
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~---------~~pCg~C~sC~~ 81 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQEN-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPT---------GEPCNTCEQCRK 81 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCC---------CCCCcccHHHHH
Confidence 445577899888888888887633 2246788999999999999999998763211000 000000000011
Q ss_pred HHHhhhCCCCcc-----ccccchHHHHHh-----hcCCceEEEEeCCCC-CHhHHHHHhCCCCccCCCcEEEEEeCc-hh
Q 044579 258 VISQVLGENLKI-----GTLIVPQNIKKR-----LQRVKVLIVLDDVND-EFTQLESLAGGVDRFSPGSRIVITTRD-KQ 325 (1103)
Q Consensus 258 ll~~l~~~~~~~-----~~~~~~~~l~~~-----L~~k~~LlVLDdv~~-~~~~l~~l~~~~~~~~~gs~IIiTTR~-~~ 325 (1103)
+.......-... ...+..+.+++. ..+++-++|+|+++. .....+.|...+........+|++|.+ ..
T Consensus 82 i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~k 161 (624)
T PRK14959 82 VTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHK 161 (624)
T ss_pred HhcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhh
Confidence 110000000000 000000111111 234567899999973 234456666665544455666665654 33
Q ss_pred hHhhc-CcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCCh-hHHHHHHhh
Q 044579 326 VLDKC-GVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNP-LALEVLGSS 388 (1103)
Q Consensus 326 v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P-Lal~~lg~~ 388 (1103)
+.... .....++++.++.++..+.+...+......- ..+.+..|++.++|.+ .|+..+...
T Consensus 162 ll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~i--d~eal~lIA~~s~GdlR~Al~lLeql 224 (624)
T PRK14959 162 FPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDY--DPAAVRLIARRAAGSVRDSMSLLGQV 224 (624)
T ss_pred hhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 33221 2235789999999999999887664433211 2356778888999865 677666543
No 122
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.85 E-value=0.00029 Score=81.16 Aligned_cols=183 Identities=16% Similarity=0.204 Sum_probs=106.4
Q ss_pred CCCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhcc--------CCceEEEEechhhhcc
Q 044579 177 ESTDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRH--------FQGKCFMANVREKANK 248 (1103)
Q Consensus 177 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--------F~~~~~~~~~~~~~~~ 248 (1103)
.|...++++|.+..++.+...+..+ .-.+.+.++|++|+||||+|+.+++.+... |...++- +.. ...
T Consensus 12 rP~~~~~iig~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~--l~~-~~~ 87 (367)
T PRK14970 12 RPQTFDDVVGQSHITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFE--LDA-ASN 87 (367)
T ss_pred CCCcHHhcCCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEE--ecc-ccC
Confidence 3455678899999999999888643 234688899999999999999998876431 2211111 100 011
Q ss_pred cChHHHHHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCC-CHhHHHHHhCCCCccCCCcEEEEEeC-chhh
Q 044579 249 MGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVND-EFTQLESLAGGVDRFSPGSRIVITTR-DKQV 326 (1103)
Q Consensus 249 ~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~-~~~~l~~l~~~~~~~~~gs~IIiTTR-~~~v 326 (1103)
.++.. ..+++.+... ....+++-++|+|+++. ....++.+...+......+.+|++|. ...+
T Consensus 88 ~~~~~-i~~l~~~~~~---------------~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl 151 (367)
T PRK14970 88 NSVDD-IRNLIDQVRI---------------PPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKI 151 (367)
T ss_pred CCHHH-HHHHHHHHhh---------------ccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccC
Confidence 11111 1122221110 00123455799999962 12335555444433344556665553 3333
Q ss_pred Hhh-cCcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhH
Q 044579 327 LDK-CGVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLA 381 (1103)
Q Consensus 327 ~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLa 381 (1103)
... ......++.++++.++....+...+...+..- ..+.+..+++.++|.+-.
T Consensus 152 ~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i--~~~al~~l~~~~~gdlr~ 205 (367)
T PRK14970 152 IPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKF--EDDALHIIAQKADGALRD 205 (367)
T ss_pred CHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHhCCCCHHH
Confidence 222 12345789999999999999888775433221 235677888888887653
No 123
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.83 E-value=0.00083 Score=80.90 Aligned_cols=197 Identities=11% Similarity=0.131 Sum_probs=107.2
Q ss_pred CCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhcc--CCceEEEEechhhhcccChHHHH
Q 044579 178 STDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRH--FQGKCFMANVREKANKMGVIHVR 255 (1103)
Q Consensus 178 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--F~~~~~~~~~~~~~~~~~~~~~~ 255 (1103)
|...+++||-+.-++.|...+..+ .-...+.++|+.|+||||+|+.+++.+-.. .+...|...+.+ ..+.-...
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~---~Cg~C~sC 87 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRMD-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTE---PCGECESC 87 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCC---CCccCHHH
Confidence 445678999998889898887632 223568899999999999999999876321 110111110000 00100111
Q ss_pred HHHHHhhhCC-----CCccccccchHHHHHhh-----cCCceEEEEeCCCC-CHhHHHHHhCCCCccCCCcEEEEEe-Cc
Q 044579 256 DEVISQVLGE-----NLKIGTLIVPQNIKKRL-----QRVKVLIVLDDVND-EFTQLESLAGGVDRFSPGSRIVITT-RD 323 (1103)
Q Consensus 256 ~~ll~~l~~~-----~~~~~~~~~~~~l~~~L-----~~k~~LlVLDdv~~-~~~~l~~l~~~~~~~~~gs~IIiTT-R~ 323 (1103)
+.+...-... .......+....+.+.+ .+++-++|+|+++. .....+.|...+....+.+.+|++| +.
T Consensus 88 ~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~ 167 (620)
T PRK14954 88 RDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTEL 167 (620)
T ss_pred HHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCCh
Confidence 1111000000 00000001111122222 23455789999973 2334566666655545556655555 43
Q ss_pred hhhHhh-cCcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChh
Q 044579 324 KQVLDK-CGVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPL 380 (1103)
Q Consensus 324 ~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL 380 (1103)
..+... ......+++.+++.++....+.+.+-...... ..+.+..+++.++|..-
T Consensus 168 ~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I--~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 168 HKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQI--DADALQLIARKAQGSMR 223 (620)
T ss_pred hhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHhCCCHH
Confidence 444333 23457899999999998888877654322211 23567788999999664
No 124
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.83 E-value=0.00063 Score=84.60 Aligned_cols=180 Identities=12% Similarity=0.093 Sum_probs=107.1
Q ss_pred CCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCC-----------------------
Q 044579 178 STDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQ----------------------- 234 (1103)
Q Consensus 178 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~----------------------- 234 (1103)
|....++||.+..++.|...+..+. -.+.+.++|..|+||||+|+.+++.+-....
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~ 89 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSL 89 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCC
Confidence 4455789999998999998886432 2356789999999999999999987632110
Q ss_pred ceEEEEechhhhcccChHHHHHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCC-CHhHHHHHhCCCCccCC
Q 044579 235 GKCFMANVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVND-EFTQLESLAGGVDRFSP 313 (1103)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~-~~~~l~~l~~~~~~~~~ 313 (1103)
.++++. .....++..+ +++...+ ...-..++.-++|||+++. .....+.|+..+.....
T Consensus 90 dv~eid----aas~~~Vd~i-R~l~~~~---------------~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~ 149 (824)
T PRK07764 90 DVTEID----AASHGGVDDA-RELRERA---------------FFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPE 149 (824)
T ss_pred cEEEec----ccccCCHHHH-HHHHHHH---------------HhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCC
Confidence 001110 0000111111 1111110 0011234555788999973 23445666666665556
Q ss_pred CcEEEEEeCc-hhhHhhc-CcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChh
Q 044579 314 GSRIVITTRD-KQVLDKC-GVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPL 380 (1103)
Q Consensus 314 gs~IIiTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL 380 (1103)
.+.+|++|.+ ..+.... .....|++..++.++..+++.+.+-..+... ..+....|++.++|.+.
T Consensus 150 ~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~i--d~eal~lLa~~sgGdlR 216 (824)
T PRK07764 150 HLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPV--EPGVLPLVIRAGGGSVR 216 (824)
T ss_pred CeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHH
Confidence 6666655543 3444332 3357899999999999888877653332221 22456778899999884
No 125
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.83 E-value=0.00028 Score=84.11 Aligned_cols=180 Identities=12% Similarity=0.100 Sum_probs=105.8
Q ss_pred CCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccC---------------------Cce
Q 044579 178 STDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHF---------------------QGK 236 (1103)
Q Consensus 178 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F---------------------~~~ 236 (1103)
|....++||-+.-++.+..++..+. -.+.+.++|..|+||||+|+.++..+-... ...
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 4455789999999999988886332 235678999999999999999998763211 111
Q ss_pred EEEEechhhhcccChHHHHHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCCC-HhHHHHHhCCCCccCCCc
Q 044579 237 CFMANVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVNDE-FTQLESLAGGVDRFSPGS 315 (1103)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~-~~~l~~l~~~~~~~~~gs 315 (1103)
+.+. .....++.. .++++..... .-..+++-++|+|+++.- ....+.+...+......+
T Consensus 91 ~ei~----~~~~~~vd~-ir~l~~~~~~---------------~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~ 150 (527)
T PRK14969 91 IEVD----AASNTQVDA-MRELLDNAQY---------------APTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHV 150 (527)
T ss_pred eEee----ccccCCHHH-HHHHHHHHhh---------------CcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCE
Confidence 1111 000011111 1111111100 001345678999999732 234556666555545566
Q ss_pred EEEEEeCch-hhHhh-cCcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChh
Q 044579 316 RIVITTRDK-QVLDK-CGVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPL 380 (1103)
Q Consensus 316 ~IIiTTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL 380 (1103)
.+|++|.+. .+... ......++++.++.++..+.+.+.+-..+.. -..+....|++.++|.+-
T Consensus 151 ~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~--~~~~al~~la~~s~Gslr 215 (527)
T PRK14969 151 KFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP--FDATALQLLARAAAGSMR 215 (527)
T ss_pred EEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 666666443 33222 1223578899999999998887765333221 123456778889999774
No 126
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.81 E-value=0.00092 Score=79.93 Aligned_cols=196 Identities=16% Similarity=0.146 Sum_probs=109.4
Q ss_pred CCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHHH
Q 044579 178 STDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRDE 257 (1103)
Q Consensus 178 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ 257 (1103)
|...+++||.+.-++.|...+..+. -.+.+.++|+.|+||||+|+.++..+-...... . ...+.-.....
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-~--------~pCg~C~~C~~ 78 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILARSLNCAQGPT-A--------TPCGVCESCVA 78 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC-C--------CcccccHHHHH
Confidence 4456789999999999999886432 245678999999999999999998654211000 0 00000000000
Q ss_pred HHHhhhC-------CCCccccccchHHHHHh-----hcCCceEEEEeCCCC-CHhHHHHHhCCCCccCCCcEEEEEeC-c
Q 044579 258 VISQVLG-------ENLKIGTLIVPQNIKKR-----LQRVKVLIVLDDVND-EFTQLESLAGGVDRFSPGSRIVITTR-D 323 (1103)
Q Consensus 258 ll~~l~~-------~~~~~~~~~~~~~l~~~-----L~~k~~LlVLDdv~~-~~~~l~~l~~~~~~~~~gs~IIiTTR-~ 323 (1103)
+...-.+ +.......+....+++. ..+++-++|+|+++. .....+.|+..+........+|++|. .
T Consensus 79 i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~ 158 (584)
T PRK14952 79 LAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEP 158 (584)
T ss_pred hhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCCh
Confidence 0000000 00000000011111111 124556889999973 23456666666665556666665554 4
Q ss_pred hhhHhhc-CcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChh-HHHHH
Q 044579 324 KQVLDKC-GVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPL-ALEVL 385 (1103)
Q Consensus 324 ~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~l 385 (1103)
..+.... .....+++..++.++..+.+.+.+-..+... ..+....|++.++|.+- |+..+
T Consensus 159 ~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i--~~~al~~Ia~~s~GdlR~aln~L 220 (584)
T PRK14952 159 EKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVV--DDAVYPLVIRAGGGSPRDTLSVL 220 (584)
T ss_pred HhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHH
Confidence 4444332 2357899999999999988887664433222 13456778888899774 44444
No 127
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.81 E-value=0.00024 Score=77.40 Aligned_cols=153 Identities=14% Similarity=0.208 Sum_probs=80.0
Q ss_pred CccccchhHHHHHHhhc-------------ccCCCeEEEEEeecCCChhHHHHHHHHHHHhccC--CceEEEEechhhhc
Q 044579 183 GLVGLNTRIEEMKSLLC-------------LESHDVRIVGIWGMGGIGKTTIASVVFHQISRHF--QGKCFMANVREKAN 247 (1103)
Q Consensus 183 ~~vGr~~~~~~l~~~L~-------------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F--~~~~~~~~~~~~~~ 247 (1103)
.+||.+.-.++|.++.. ...+....+.++|++|+||||+|+.+++.+...- ....++. +..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~-~~~--- 82 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIE-VER--- 82 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEE-ecH---
Confidence 36776666655543322 0123456788999999999999999998653211 1112221 100
Q ss_pred ccChHHHHHHHHHhhhCCCCccccccchHHHHHhhc-CCceEEEEeCCCC---------CHhHHHHHhCCCCccCCCcEE
Q 044579 248 KMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQ-RVKVLIVLDDVND---------EFTQLESLAGGVDRFSPGSRI 317 (1103)
Q Consensus 248 ~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~-~k~~LlVLDdv~~---------~~~~l~~l~~~~~~~~~gs~I 317 (1103)
. ++.....++. ...+++.+. ...-+|++|+++. ..+.++.+............+
T Consensus 83 ----~----~l~~~~~g~~--------~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~v 146 (261)
T TIGR02881 83 ----A----DLVGEYIGHT--------AQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVL 146 (261)
T ss_pred ----H----Hhhhhhccch--------HHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEE
Confidence 0 1111111110 111222221 1234889999962 123455555544433333455
Q ss_pred EEEeCchhhHh------h--cCcceEEEccCCChhHHHHHHHHhhh
Q 044579 318 VITTRDKQVLD------K--CGVSYIYKVKRLEHDNALELFCRKAI 355 (1103)
Q Consensus 318 IiTTR~~~v~~------~--~~~~~~~~l~~L~~~ea~~Lf~~~a~ 355 (1103)
|+++.....-. . -.....++++.++.+|-.+++.+.+-
T Consensus 147 ila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 147 ILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred EecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 56554332210 1 12235688999999999999987764
No 128
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.79 E-value=0.00046 Score=83.39 Aligned_cols=195 Identities=13% Similarity=0.147 Sum_probs=108.7
Q ss_pred CCCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHH
Q 044579 177 ESTDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRD 256 (1103)
Q Consensus 177 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~ 256 (1103)
.|....++||.+.-++.|...+..+. -.+.+.++|+.|+||||+|+.++..+-..-....+-. .... .
T Consensus 13 RP~~f~dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~p-C~~C----------~ 80 (725)
T PRK07133 13 RPKTFDDIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEP-CQEC----------I 80 (725)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCc-hhHH----------H
Confidence 34456778999999999998886432 3466789999999999999999986532110000000 0000 0
Q ss_pred HHHHh----hhCCCCccccccchHHHHHhh-----cCCceEEEEeCCCC-CHhHHHHHhCCCCccCCCcEEEEEe-Cchh
Q 044579 257 EVISQ----VLGENLKIGTLIVPQNIKKRL-----QRVKVLIVLDDVND-EFTQLESLAGGVDRFSPGSRIVITT-RDKQ 325 (1103)
Q Consensus 257 ~ll~~----l~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVLDdv~~-~~~~l~~l~~~~~~~~~gs~IIiTT-R~~~ 325 (1103)
..... +..........+..+.+.+.+ .+++-++|+|+++. ....+.+|+..+....+...+|++| +...
T Consensus 81 ~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~K 160 (725)
T PRK07133 81 ENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHK 160 (725)
T ss_pred HhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhh
Confidence 00000 000000000000011122221 35566889999973 2345666766665545555555444 4444
Q ss_pred hHhh-cCcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChh-HHHHH
Q 044579 326 VLDK-CGVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPL-ALEVL 385 (1103)
Q Consensus 326 v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~l 385 (1103)
+... ......+++.+++.++..+.+...+-..+... ..+.+..+++.++|.+. |+..+
T Consensus 161 Ll~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~i--d~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 161 IPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISY--EKNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred hhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHH
Confidence 4433 23346899999999999988887653322211 23457788999988764 44433
No 129
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.79 E-value=0.00071 Score=79.63 Aligned_cols=185 Identities=14% Similarity=0.160 Sum_probs=109.5
Q ss_pred CCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhc-cCCc--eEEEE--------------
Q 044579 178 STDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISR-HFQG--KCFMA-------------- 240 (1103)
Q Consensus 178 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~--~~~~~-------------- 240 (1103)
|...+++||-+.-.+.|...+..+. -.++..++|..|+||||+|+.+++.+-. .... -|...
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv 88 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDI 88 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeE
Confidence 4456789999988899998886432 3456789999999999999999987521 1100 00000
Q ss_pred -echhhhcccChHHHHHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCC-CHhHHHHHhCCCCccCCCcEEE
Q 044579 241 -NVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVND-EFTQLESLAGGVDRFSPGSRIV 318 (1103)
Q Consensus 241 -~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~-~~~~l~~l~~~~~~~~~gs~II 318 (1103)
... .....++..+. +++..... .-..+++-++|+|+++. ..+..++|+..+....+.+++|
T Consensus 89 ~eld-aas~~gId~IR-elie~~~~---------------~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FI 151 (535)
T PRK08451 89 IEMD-AASNRGIDDIR-ELIEQTKY---------------KPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFI 151 (535)
T ss_pred EEec-cccccCHHHHH-HHHHHHhh---------------CcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEE
Confidence 000 00011111111 11111000 00113456889999973 2344666666665555677777
Q ss_pred EEeCchh-hHhh-cCcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhHH
Q 044579 319 ITTRDKQ-VLDK-CGVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLAL 382 (1103)
Q Consensus 319 iTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal 382 (1103)
++|.+.. +... ......+++.+++.++..+.+...+-..+... ..+.+..|++.++|.+.-+
T Consensus 152 L~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i--~~~Al~~Ia~~s~GdlR~a 215 (535)
T PRK08451 152 LATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSY--EPEALEILARSGNGSLRDT 215 (535)
T ss_pred EEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHHHH
Confidence 7776642 2211 12346889999999999998877664333221 2356788999999988443
No 130
>PRK06620 hypothetical protein; Validated
Probab=97.77 E-value=0.00014 Score=76.24 Aligned_cols=133 Identities=9% Similarity=0.054 Sum_probs=76.1
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHHHHHHhhhCCCCccccccchHHHHHhhcCC
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRV 285 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k 285 (1103)
+.+.|||++|+|||+|++++++.... .++... .. .. +..+ .
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~~~-----~~-----~~-----------------------~~~~-~ 85 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-----YIIKDI-----FF-----NE-----------------------EILE-K 85 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-----EEcchh-----hh-----ch-----------------------hHHh-c
Confidence 56899999999999999997765421 222200 00 00 0011 2
Q ss_pred ceEEEEeCCCCCHhHHHHHhCCCCc-cCCCcEEEEEeCchhh-------HhhcCcceEEEccCCChhHHHHHHHHhhhcc
Q 044579 286 KVLIVLDDVNDEFTQLESLAGGVDR-FSPGSRIVITTRDKQV-------LDKCGVSYIYKVKRLEHDNALELFCRKAIRQ 357 (1103)
Q Consensus 286 ~~LlVLDdv~~~~~~l~~l~~~~~~-~~~gs~IIiTTR~~~v-------~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~ 357 (1103)
.-++++||++ ...+ ..+...++. ...|..||+|++.... ...+...-++++++++.++-.+++.+.+-..
T Consensus 86 ~d~lliDdi~-~~~~-~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~ 163 (214)
T PRK06620 86 YNAFIIEDIE-NWQE-PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS 163 (214)
T ss_pred CCEEEEeccc-cchH-HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc
Confidence 3478889997 4322 122211111 1356789999984422 2223344589999999999888887776422
Q ss_pred CCCChhHHHHHHHHHHHhCCChhH
Q 044579 358 NSRSQDLLELSKEIVGYAKGNPLA 381 (1103)
Q Consensus 358 ~~~~~~~~~~~~~i~~~~~G~PLa 381 (1103)
.-. -.+++..-|++++.|.--.
T Consensus 164 ~l~--l~~ev~~~L~~~~~~d~r~ 185 (214)
T PRK06620 164 SVT--ISRQIIDFLLVNLPREYSK 185 (214)
T ss_pred CCC--CCHHHHHHHHHHccCCHHH
Confidence 111 1235566666666555433
No 131
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.76 E-value=1.4e-06 Score=100.18 Aligned_cols=53 Identities=19% Similarity=0.377 Sum_probs=25.4
Q ss_pred ccccccccccccccccccccCCcceEecCCCCCCCccCCCCCCCCCccEEEecC
Q 044579 598 LIELRLPYSKVEQIWEGKKEASKLKSIDLCHSQHLIRMPDLSEIPNLERTNFFN 651 (1103)
Q Consensus 598 L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~ 651 (1103)
|...+.++|.+..+-.++.-++.|+.|||++|++. ....+..++.|++|+|+.
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~-~v~~Lr~l~~LkhLDlsy 218 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFT-KVDNLRRLPKLKHLDLSY 218 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhh-hhHHHHhccccccccccc
Confidence 34444455555444444555555555555555532 222344444455555444
No 132
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.76 E-value=0.00029 Score=79.44 Aligned_cols=152 Identities=13% Similarity=0.178 Sum_probs=87.5
Q ss_pred CCCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHH
Q 044579 177 ESTDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRD 256 (1103)
Q Consensus 177 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~ 256 (1103)
.|...++++|.+...+.+..++..+ .-..++.++|++|+||||+|+++++.....+ ..+. . .. .... ..+
T Consensus 16 rP~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~---~~i~-~---~~-~~~~-~i~ 85 (316)
T PHA02544 16 RPSTIDECILPAADKETFKSIVKKG-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEV---LFVN-G---SD-CRID-FVR 85 (316)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccc---eEec-c---Cc-ccHH-HHH
Confidence 3445678999999999999888632 2346777899999999999999998764322 2222 1 11 1111 111
Q ss_pred HHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCCC--HhHHHHHhCCCCccCCCcEEEEEeCchhhH-hhc-Cc
Q 044579 257 EVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVNDE--FTQLESLAGGVDRFSPGSRIVITTRDKQVL-DKC-GV 332 (1103)
Q Consensus 257 ~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~l~~l~~~~~~~~~gs~IIiTTR~~~v~-~~~-~~ 332 (1103)
..+...... ..+.+.+-++|+||++.. .+..+.+...+.....++++|+||...... ... ..
T Consensus 86 ~~l~~~~~~--------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR 151 (316)
T PHA02544 86 NRLTRFAST--------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSR 151 (316)
T ss_pred HHHHHHHHh--------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhh
Confidence 111111100 001134557899999732 122233333333345678899988754321 111 22
Q ss_pred ceEEEccCCChhHHHHHHHH
Q 044579 333 SYIYKVKRLEHDNALELFCR 352 (1103)
Q Consensus 333 ~~~~~l~~L~~~ea~~Lf~~ 352 (1103)
...+.++..+.++..+++..
T Consensus 152 ~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 152 CRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred ceEEEeCCCCHHHHHHHHHH
Confidence 24677778888888776654
No 133
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.76 E-value=0.0012 Score=80.37 Aligned_cols=197 Identities=13% Similarity=0.135 Sum_probs=110.6
Q ss_pred CCCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHH
Q 044579 177 ESTDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRD 256 (1103)
Q Consensus 177 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~ 256 (1103)
.|...+++||.+.-++.|..++..+. -.+.+.++|..|+||||+|+.+++.+.......- ....+.....+
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~--------~~~c~~c~~c~ 81 (585)
T PRK14950 11 RSQTFAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPK--------GRPCGTCEMCR 81 (585)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC--------CCCCccCHHHH
Confidence 34456789999999999988886432 2456789999999999999999987632111000 00001111111
Q ss_pred HHHHhhhCCCCc-----cccccchHHHHHhh-----cCCceEEEEeCCCC-CHhHHHHHhCCCCccCCCcEEEEEeCch-
Q 044579 257 EVISQVLGENLK-----IGTLIVPQNIKKRL-----QRVKVLIVLDDVND-EFTQLESLAGGVDRFSPGSRIVITTRDK- 324 (1103)
Q Consensus 257 ~ll~~l~~~~~~-----~~~~~~~~~l~~~L-----~~k~~LlVLDdv~~-~~~~l~~l~~~~~~~~~gs~IIiTTR~~- 324 (1103)
.+......+-.. ....+....+.+.+ .+++-++|+|+++. ..+..+.|...+....+.+.+|++|.+.
T Consensus 82 ~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~ 161 (585)
T PRK14950 82 AIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVH 161 (585)
T ss_pred HHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChh
Confidence 111111000000 00000111122211 24466899999962 2244566665555445566766666443
Q ss_pred hhHhhc-CcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhHHHH
Q 044579 325 QVLDKC-GVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLALEV 384 (1103)
Q Consensus 325 ~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 384 (1103)
.+.... .....+++..++.++..+.+.+.+...+... ..+.+..+++.++|.+..+..
T Consensus 162 kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i--~~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 162 KVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINL--EPGALEAIARAATGSMRDAEN 220 (585)
T ss_pred hhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHH
Confidence 333221 2235788999999999988887764433221 235678899999998865443
No 134
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.74 E-value=0.00044 Score=86.52 Aligned_cols=170 Identities=15% Similarity=0.184 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHhcccCCCCCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccC------
Q 044579 160 LVEKIVEDISKKLEDMSESTDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHF------ 233 (1103)
Q Consensus 160 ~i~~iv~~i~~~l~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------ 233 (1103)
.+++...+...+.. +...+.+|||+++++++.+.|... ...-+.++|.+|+|||++|+.++.++...-
T Consensus 164 ~l~~~~~~l~~~~r----~~~l~~~igr~~ei~~~~~~L~~~--~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~ 237 (731)
T TIGR02639 164 ALEKYTVDLTEKAK----NGKIDPLIGREDELERTIQVLCRR--KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLK 237 (731)
T ss_pred HHHHHhhhHHHHHh----cCCCCcccCcHHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhc
Confidence 45555555544432 344567999999999999888643 234567999999999999999999874421
Q ss_pred CceEEEEechhhhcccChHHHHHHHHHhhhCCCCccccccchHHHHHhh-cCCceEEEEeCCCCC----------HhHHH
Q 044579 234 QGKCFMANVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRL-QRVKVLIVLDDVNDE----------FTQLE 302 (1103)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~~----------~~~l~ 302 (1103)
...+|..+............-.. .....+.+.+ ..++++|++|+++.- .+..+
T Consensus 238 ~~~~~~~~~~~l~a~~~~~g~~e----------------~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~ 301 (731)
T TIGR02639 238 NAKIYSLDMGSLLAGTKYRGDFE----------------ERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASN 301 (731)
T ss_pred CCeEEEecHHHHhhhccccchHH----------------HHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHH
Confidence 23444433221110000000000 0011122222 245789999998610 11122
Q ss_pred HHhCCCCccCCC-cEEEEEeCchhhHh------hc-CcceEEEccCCChhHHHHHHHHhh
Q 044579 303 SLAGGVDRFSPG-SRIVITTRDKQVLD------KC-GVSYIYKVKRLEHDNALELFCRKA 354 (1103)
Q Consensus 303 ~l~~~~~~~~~g-s~IIiTTR~~~v~~------~~-~~~~~~~l~~L~~~ea~~Lf~~~a 354 (1103)
.+.+.+. .| -++|-+|...+... .. .....++++.++.++..+++....
T Consensus 302 ~L~~~l~---~g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 302 LLKPALS---SGKLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHh---CCCeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 3333322 33 34444444322110 00 123478999999999999998654
No 135
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.74 E-value=0.00042 Score=87.31 Aligned_cols=191 Identities=15% Similarity=0.162 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHhcccCCCCCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccC------
Q 044579 160 LVEKIVEDISKKLEDMSESTDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHF------ 233 (1103)
Q Consensus 160 ~i~~iv~~i~~~l~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------ 233 (1103)
.+++...+...+. .+...+.+|||+.++.++.+.|.... ..-+.++|.+|+||||+|+.+++++....
T Consensus 169 ~l~~~~~~L~~~~----r~~~ld~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~ 242 (852)
T TIGR03345 169 ALDQYTTDLTAQA----REGKIDPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALR 242 (852)
T ss_pred hHHHHhhhHHHHh----cCCCCCcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHHHHhhCCCCcccc
Confidence 4555554544443 34455789999999999998886432 33567999999999999999999875432
Q ss_pred CceEEEEechhhhccc----ChHHHHHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCCCH-------hHHH
Q 044579 234 QGKCFMANVREKANKM----GVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVNDEF-------TQLE 302 (1103)
Q Consensus 234 ~~~~~~~~~~~~~~~~----~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~-------~~l~ 302 (1103)
...+|..++....... ....-.++++..+ ++ .+++++|++|+++ .. .+.+
T Consensus 243 ~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~----------------~~--~~~~~ILfIDEih-~l~~~g~~~~~~d 303 (852)
T TIGR03345 243 NVRLLSLDLGLLQAGASVKGEFENRLKSVIDEV----------------KA--SPQPIILFIDEAH-TLIGAGGQAGQGD 303 (852)
T ss_pred CCeEEEeehhhhhcccccchHHHHHHHHHHHHH----------------Hh--cCCCeEEEEeChH-HhccCCCcccccc
Confidence 1233433322211000 0111111111111 10 2468999999986 22 1111
Q ss_pred ---HHhCCCCccCCC-cEEEEEeCchhhHhh-------cCcceEEEccCCChhHHHHHHHHhhhc--cCCCChhHHHHHH
Q 044579 303 ---SLAGGVDRFSPG-SRIVITTRDKQVLDK-------CGVSYIYKVKRLEHDNALELFCRKAIR--QNSRSQDLLELSK 369 (1103)
Q Consensus 303 ---~l~~~~~~~~~g-s~IIiTTR~~~v~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~a~~--~~~~~~~~~~~~~ 369 (1103)
.|.+.+ ..| -++|-||...+.-.. ......+.|++++.+++.+++....-. ......-..+...
T Consensus 304 ~~n~Lkp~l---~~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~ 380 (852)
T TIGR03345 304 AANLLKPAL---ARGELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVV 380 (852)
T ss_pred HHHHhhHHh---hCCCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHH
Confidence 233332 233 455656654322110 122358999999999999998544311 1111111234455
Q ss_pred HHHHHhCCC
Q 044579 370 EIVGYAKGN 378 (1103)
Q Consensus 370 ~i~~~~~G~ 378 (1103)
.+++.+.+.
T Consensus 381 ~~~~ls~ry 389 (852)
T TIGR03345 381 AAVELSHRY 389 (852)
T ss_pred HHHHHcccc
Confidence 566655543
No 136
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.70 E-value=0.00037 Score=81.52 Aligned_cols=162 Identities=17% Similarity=0.356 Sum_probs=89.2
Q ss_pred CCCCccccchhHHHHHHhhcc-----------cCCCeEEEEEeecCCChhHHHHHHHHHHHhccC-----CceEEEEech
Q 044579 180 DLDGLVGLNTRIEEMKSLLCL-----------ESHDVRIVGIWGMGGIGKTTIASVVFHQISRHF-----QGKCFMANVR 243 (1103)
Q Consensus 180 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-----~~~~~~~~~~ 243 (1103)
...++.|.+..++++.+.+.. +-...+-+.++|++|.|||++|+++++.+...+ ....|+. +.
T Consensus 180 ~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~-v~ 258 (512)
T TIGR03689 180 TYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN-IK 258 (512)
T ss_pred CHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe-cc
Confidence 346678899999888776531 112345689999999999999999999876542 2233432 21
Q ss_pred hhhcccChHHHHHHHHHhhhCCCCccccccchHHHHHh-hcCCceEEEEeCCCCCH--------h-----HHHHHhCCCC
Q 044579 244 EKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKR-LQRVKVLIVLDDVNDEF--------T-----QLESLAGGVD 309 (1103)
Q Consensus 244 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~-L~~k~~LlVLDdv~~~~--------~-----~l~~l~~~~~ 309 (1103)
.. +++....++....- .......+.. ..+++++|+||+++.-. . .+..+...++
T Consensus 259 ~~-----------eLl~kyvGete~~i-r~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LD 326 (512)
T TIGR03689 259 GP-----------ELLNKYVGETERQI-RLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELD 326 (512)
T ss_pred ch-----------hhcccccchHHHHH-HHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhc
Confidence 10 11111111000000 0000011111 13468999999997210 0 1223333333
Q ss_pred ccC--CCcEEEEEeCchhhHh-----hcCcceEEEccCCChhHHHHHHHHhh
Q 044579 310 RFS--PGSRIVITTRDKQVLD-----KCGVSYIYKVKRLEHDNALELFCRKA 354 (1103)
Q Consensus 310 ~~~--~gs~IIiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a 354 (1103)
... .+..||.||...+.+. ....+..++++..+.++..++|..+.
T Consensus 327 gl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 327 GVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred ccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 222 3445566665443322 12446679999999999999998876
No 137
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.70 E-value=0.00077 Score=78.62 Aligned_cols=158 Identities=16% Similarity=0.216 Sum_probs=89.8
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhccCC--ceEEEEechhhhcccChHHHHHHHHHhhhCCCCccccccchHHHHHhh
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISRHFQ--GKCFMANVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRL 282 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~--~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L 282 (1103)
...+.|+|..|+|||+||+++++.+..+.. .++++. . ..+..++...+... ....+.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~-~---------~~~~~~~~~~~~~~--------~~~~~~~~~ 197 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS-S---------EKFTNDFVNALRNN--------KMEEFKEKY 197 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE-H---------HHHHHHHHHHHHcC--------CHHHHHHHH
Confidence 346889999999999999999998766543 234443 1 12222333333211 112334444
Q ss_pred cCCceEEEEeCCCCC--H-hHHHHHhCCCCc-cCCCcEEEEEeCch-hhH--------hhcCcceEEEccCCChhHHHHH
Q 044579 283 QRVKVLIVLDDVNDE--F-TQLESLAGGVDR-FSPGSRIVITTRDK-QVL--------DKCGVSYIYKVKRLEHDNALEL 349 (1103)
Q Consensus 283 ~~k~~LlVLDdv~~~--~-~~l~~l~~~~~~-~~~gs~IIiTTR~~-~v~--------~~~~~~~~~~l~~L~~~ea~~L 349 (1103)
++ .-+|||||++.- . ...+.+...++. ...|..+|+|+... ..+ ..+.....+++++.+.++-.++
T Consensus 198 ~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~i 276 (405)
T TIGR00362 198 RS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAI 276 (405)
T ss_pred Hh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHH
Confidence 33 347889999621 1 111222222111 12456688887632 211 1223335789999999999999
Q ss_pred HHHhhhccCCCChhHHHHHHHHHHHhCCChhHHH
Q 044579 350 FCRKAIRQNSRSQDLLELSKEIVGYAKGNPLALE 383 (1103)
Q Consensus 350 f~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 383 (1103)
+.+.+-...... .+++...|++.+.|..-.|.
T Consensus 277 l~~~~~~~~~~l--~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 277 LQKKAEEEGLEL--PDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHHcCCCC--CHHHHHHHHHhcCCCHHHHH
Confidence 998874432221 23566777777777665443
No 138
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.68 E-value=0.0014 Score=76.87 Aligned_cols=182 Identities=14% Similarity=0.230 Sum_probs=105.5
Q ss_pred CCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccC---C---c-eE-------------
Q 044579 178 STDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHF---Q---G-KC------------- 237 (1103)
Q Consensus 178 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F---~---~-~~------------- 237 (1103)
|...++++|.+.-++.+...+..+. -.+.+.++|..|+||||+|+.+++.+-..- + + .|
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 4456789999999999998886332 236688999999999999999998753210 0 0 00
Q ss_pred EEEechhhhcccChHHHHHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCC-CHhHHHHHhCCCCccCCCcE
Q 044579 238 FMANVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVND-EFTQLESLAGGVDRFSPGSR 316 (1103)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~-~~~~l~~l~~~~~~~~~gs~ 316 (1103)
|+. +. .....++..+ +++...+ -.....+++-++|+|+++. .....+.|...+....+...
T Consensus 92 ~~~-i~-g~~~~gid~i-r~i~~~l---------------~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~ 153 (451)
T PRK06305 92 VLE-ID-GASHRGIEDI-RQINETV---------------LFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVK 153 (451)
T ss_pred eEE-ee-ccccCCHHHH-HHHHHHH---------------HhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCce
Confidence 000 00 0000011111 0111000 0001124567889999962 12345555555554445666
Q ss_pred EEEEeCc-hhhHhhc-CcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChh
Q 044579 317 IVITTRD-KQVLDKC-GVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPL 380 (1103)
Q Consensus 317 IIiTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL 380 (1103)
+|++|.. ..+.... .....+++.++++++..+.+...+-..+.. -..+.+..++++++|.+.
T Consensus 154 ~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~--i~~~al~~L~~~s~gdlr 217 (451)
T PRK06305 154 FFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE--TSREALLPIARAAQGSLR 217 (451)
T ss_pred EEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 6666643 3333221 234678999999999998888766432221 123567889999999764
No 139
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.67 E-value=0.0017 Score=76.56 Aligned_cols=192 Identities=11% Similarity=0.081 Sum_probs=106.2
Q ss_pred CCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhcc---C-C-ceEEEEechhhhc--ccC
Q 044579 178 STDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRH---F-Q-GKCFMANVREKAN--KMG 250 (1103)
Q Consensus 178 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---F-~-~~~~~~~~~~~~~--~~~ 250 (1103)
|....+++|-+.-++.+...+..+. -.+...++|+.|+||||+|+.++..+-.. . + +.. -.+...... ..+
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~-c~nc~~i~~g~~~d 89 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGK-CENCVEIDKGSFPD 89 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCc-cHHHHHHhcCCCCc
Confidence 4455778999999999998886432 34567789999999999999999875321 0 0 000 000000000 000
Q ss_pred hHHHHHHHHHhhhCCCCccccccchHHHHHh-----hcCCceEEEEeCCCCC-HhHHHHHhCCCCccCCCcEEEEEe-Cc
Q 044579 251 VIHVRDEVISQVLGENLKIGTLIVPQNIKKR-----LQRVKVLIVLDDVNDE-FTQLESLAGGVDRFSPGSRIVITT-RD 323 (1103)
Q Consensus 251 ~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~-----L~~k~~LlVLDdv~~~-~~~l~~l~~~~~~~~~gs~IIiTT-R~ 323 (1103)
+. .+.. . .....+....+.+. ..+++-++|+|+++.- ....+.+...+....+...+|++| +.
T Consensus 90 ~~--------eida-a-s~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~ 159 (486)
T PRK14953 90 LI--------EIDA-A-SNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEY 159 (486)
T ss_pred EE--------EEeC-c-cCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCH
Confidence 00 0000 0 00000001112222 1345679999999732 234556655555444555655555 43
Q ss_pred hhhHhh-cCcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhHHH
Q 044579 324 KQVLDK-CGVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLALE 383 (1103)
Q Consensus 324 ~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 383 (1103)
..+... ......+++.+++.++..+.+...+-..+... ..+.+..+++.++|.+..+.
T Consensus 160 ~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~i--d~~al~~La~~s~G~lr~al 218 (486)
T PRK14953 160 DKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEY--EEKALDLLAQASEGGMRDAA 218 (486)
T ss_pred HHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHH
Confidence 333322 12345789999999999988887764333221 23556778888999775443
No 140
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.67 E-value=0.00066 Score=80.21 Aligned_cols=157 Identities=13% Similarity=0.180 Sum_probs=91.5
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhccCCc--eEEEEechhhhcccChHHHHHHHHHhhhCCCCccccccchHHHHHhh
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISRHFQG--KCFMANVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRL 282 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L 282 (1103)
...+.|+|..|+|||+||+++++.+..++.. +.++. . ..+..++...+... ....+++.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~-~---------~~~~~~~~~~~~~~--------~~~~~~~~~ 209 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT-S---------EKFTNDFVNALRNN--------TMEEFKEKY 209 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE-H---------HHHHHHHHHHHHcC--------cHHHHHHHH
Confidence 3568999999999999999999988776533 33443 1 12222233332211 112344444
Q ss_pred cCCceEEEEeCCCC---CHhHHHHHhCCCCc-cCCCcEEEEEeCchh---------hHhhcCcceEEEccCCChhHHHHH
Q 044579 283 QRVKVLIVLDDVND---EFTQLESLAGGVDR-FSPGSRIVITTRDKQ---------VLDKCGVSYIYKVKRLEHDNALEL 349 (1103)
Q Consensus 283 ~~k~~LlVLDdv~~---~~~~l~~l~~~~~~-~~~gs~IIiTTR~~~---------v~~~~~~~~~~~l~~L~~~ea~~L 349 (1103)
+ +.-+|||||++. .....+.+...++. ...|..||+||.... +...+.....+++++++.++-.++
T Consensus 210 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~i 288 (450)
T PRK00149 210 R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAI 288 (450)
T ss_pred h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHH
Confidence 4 345889999962 11112222221111 124556888886431 122233445789999999999999
Q ss_pred HHHhhhccCCCChhHHHHHHHHHHHhCCChhHH
Q 044579 350 FCRKAIRQNSRSQDLLELSKEIVGYAKGNPLAL 382 (1103)
Q Consensus 350 f~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal 382 (1103)
+...+-..... -.+++...|++.+.|..-.|
T Consensus 289 l~~~~~~~~~~--l~~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 289 LKKKAEEEGID--LPDEVLEFIAKNITSNVREL 319 (450)
T ss_pred HHHHHHHcCCC--CCHHHHHHHHcCcCCCHHHH
Confidence 99887442221 12356777888888776543
No 141
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.67 E-value=0.00065 Score=79.43 Aligned_cols=159 Identities=13% Similarity=0.174 Sum_probs=91.4
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhccCC-c-eEEEEechhhhcccChHHHHHHHHHhhhCCCCccccccchHHHHHhh
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISRHFQ-G-KCFMANVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRL 282 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~-~-~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L 282 (1103)
...+.|||.+|+|||+||+++++.+....+ . +.|+. . .++..++...+... ....+++..
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~-~---------~~f~~~~~~~~~~~--------~~~~f~~~~ 191 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-S---------EKFLNDLVDSMKEG--------KLNEFREKY 191 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-H---------HHHHHHHHHHHhcc--------cHHHHHHHH
Confidence 345899999999999999999998766543 2 34443 1 12333333333211 111334444
Q ss_pred cCCceEEEEeCCCCCH--hH-HHHHhCCCCc-cCCCcEEEEEeC-chhhHh--------hcCcceEEEccCCChhHHHHH
Q 044579 283 QRVKVLIVLDDVNDEF--TQ-LESLAGGVDR-FSPGSRIVITTR-DKQVLD--------KCGVSYIYKVKRLEHDNALEL 349 (1103)
Q Consensus 283 ~~k~~LlVLDdv~~~~--~~-l~~l~~~~~~-~~~gs~IIiTTR-~~~v~~--------~~~~~~~~~l~~L~~~ea~~L 349 (1103)
+.+.-+|++||++.-. .. -+.+...++. ...|..||+||. .+.-+. .+...-.+++++.+.+.-.++
T Consensus 192 ~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~I 271 (440)
T PRK14088 192 RKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKI 271 (440)
T ss_pred HhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHH
Confidence 4445689999996211 11 1222221111 123557888884 332221 223345789999999999999
Q ss_pred HHHhhhccCCCChhHHHHHHHHHHHhCCChhHHH
Q 044579 350 FCRKAIRQNSRSQDLLELSKEIVGYAKGNPLALE 383 (1103)
Q Consensus 350 f~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 383 (1103)
+.+.+-.....- ..++...|++++.|.--.|.
T Consensus 272 L~~~~~~~~~~l--~~ev~~~Ia~~~~~~~R~L~ 303 (440)
T PRK14088 272 ARKMLEIEHGEL--PEEVLNFVAENVDDNLRRLR 303 (440)
T ss_pred HHHHHHhcCCCC--CHHHHHHHHhccccCHHHHH
Confidence 988874322221 23567777777777654443
No 142
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.66 E-value=0.00052 Score=78.65 Aligned_cols=155 Identities=20% Similarity=0.292 Sum_probs=89.6
Q ss_pred CCCCCccccchhHHHHHHhhcc-----------cCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhc
Q 044579 179 TDLDGLVGLNTRIEEMKSLLCL-----------ESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKAN 247 (1103)
Q Consensus 179 ~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~ 247 (1103)
....++.|.+...+++.+.+.. +-...+-+.++|++|.|||++|+++++.....|- .+. ..
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi---~i~-~s---- 213 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFI---RVV-GS---- 213 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEE---EEe-hH----
Confidence 3346788999998888776531 1123567999999999999999999987654431 111 00
Q ss_pred ccChHHHHHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCCCH-------------h---HHHHHhCCCCcc
Q 044579 248 KMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVNDEF-------------T---QLESLAGGVDRF 311 (1103)
Q Consensus 248 ~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~-------------~---~l~~l~~~~~~~ 311 (1103)
.+.....++.. ......+.......+.+|++|+++ .. . .+..+...+..+
T Consensus 214 ---------~l~~k~~ge~~----~~lr~lf~~A~~~~P~ILfIDEID-~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~ 279 (398)
T PTZ00454 214 ---------EFVQKYLGEGP----RMVRDVFRLARENAPSIIFIDEVD-SIATKRFDAQTGADREVQRILLELLNQMDGF 279 (398)
T ss_pred ---------HHHHHhcchhH----HHHHHHHHHHHhcCCeEEEEECHh-hhccccccccCCccHHHHHHHHHHHHHhhcc
Confidence 11111111100 000012222234568999999986 21 0 122222222221
Q ss_pred --CCCcEEEEEeCchhhHhh-----cCcceEEEccCCChhHHHHHHHHhhh
Q 044579 312 --SPGSRIVITTRDKQVLDK-----CGVSYIYKVKRLEHDNALELFCRKAI 355 (1103)
Q Consensus 312 --~~gs~IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~ 355 (1103)
..+..||.||...+.+.. ...+..++++..+.++..++|..+.-
T Consensus 280 ~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~ 330 (398)
T PTZ00454 280 DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITS 330 (398)
T ss_pred CCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHh
Confidence 235678888875543321 24567789999999998888886653
No 143
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=3.6e-06 Score=87.16 Aligned_cols=82 Identities=12% Similarity=0.107 Sum_probs=56.7
Q ss_pred cCCCceEEEEEcCCCCCCCCCcc----cccccccccccccccccccccc-ccCCcceEecCCCCCCCccC--CCCCCCCC
Q 044579 571 DLPEKLRYLHWHGYPLKTLPFDF----ELENLIELRLPYSKVEQIWEGK-KEASKLKSIDLCHSQHLIRM--PDLSEIPN 643 (1103)
Q Consensus 571 ~l~~~Lr~L~l~~~~l~~lp~~~----~l~~L~~L~L~~n~i~~l~~~~-~~l~~L~~L~L~~~~~~~~~--p~l~~l~~ 643 (1103)
.....++.|++.+|.++.....+ +++.|+.|+|+.|.+...-... ..+.+|++|-|.+..+.-.. ..+..+|.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 33446788888888888766544 7888888888888876433333 35678888888887643221 23667888
Q ss_pred ccEEEecCC
Q 044579 644 LERTNFFNC 652 (1103)
Q Consensus 644 L~~L~L~~~ 652 (1103)
++.|+++.|
T Consensus 148 vtelHmS~N 156 (418)
T KOG2982|consen 148 VTELHMSDN 156 (418)
T ss_pred hhhhhhccc
Confidence 888888775
No 144
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.64 E-value=0.003 Score=75.76 Aligned_cols=192 Identities=14% Similarity=0.158 Sum_probs=110.1
Q ss_pred CCCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhcc-----CCceEEEEechhhhcc--c
Q 044579 177 ESTDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRH-----FQGKCFMANVREKANK--M 249 (1103)
Q Consensus 177 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----F~~~~~~~~~~~~~~~--~ 249 (1103)
.|....++||-+.-++.|...+..+. -.+.+.++|+.|+||||+|+.+++.+-.. .++.. ..+.++.... .
T Consensus 11 RP~~f~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~-C~~C~~i~~~~~~ 88 (563)
T PRK06647 11 RPRDFNSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGE-CSSCKSIDNDNSL 88 (563)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCcc-chHHHHHHcCCCC
Confidence 34556789999999999999886432 34678899999999999999999875321 01000 0000000000 0
Q ss_pred ChHHHHHHHHHhhhCCCCccccccchHHHHH-----hhcCCceEEEEeCCCC-CHhHHHHHhCCCCccCCCcEEEEEeCc
Q 044579 250 GVIHVRDEVISQVLGENLKIGTLIVPQNIKK-----RLQRVKVLIVLDDVND-EFTQLESLAGGVDRFSPGSRIVITTRD 323 (1103)
Q Consensus 250 ~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~-----~L~~k~~LlVLDdv~~-~~~~l~~l~~~~~~~~~gs~IIiTTR~ 323 (1103)
++. .+.+.. ....+....+.+ -..+++-++|+|+++. ....++.|...+....+...+|.+|.+
T Consensus 89 dv~--------~idgas--~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte 158 (563)
T PRK06647 89 DVI--------EIDGAS--NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTE 158 (563)
T ss_pred CeE--------EecCcc--cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCC
Confidence 000 000000 000000011111 1234566899999973 234466777766655566666666544
Q ss_pred -hhhHhhc-CcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhHH
Q 044579 324 -KQVLDKC-GVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLAL 382 (1103)
Q Consensus 324 -~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal 382 (1103)
..+.... .....++..+++.++..+.+...+...+... ..+.+..|++.++|.+..+
T Consensus 159 ~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~i--d~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 159 VHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKY--EDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred hHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 3333222 2345789999999999888887764433221 2356777888999987543
No 145
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.64 E-value=8.4e-05 Score=82.45 Aligned_cols=89 Identities=18% Similarity=0.156 Sum_probs=57.5
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhc-cCCceEEEEechhhhcccChHHHHHHHHHhhhCCCCcccccc------chHH
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISR-HFQGKCFMANVREKANKMGVIHVRDEVISQVLGENLKIGTLI------VPQN 277 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~------~~~~ 277 (1103)
-+-.+|+|++|+||||||+++|+.+.. +|+..+|+..+++. ...+.+++++++..+........... ....
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER--~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie 246 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDER--PEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIE 246 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCc--hhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHH
Confidence 356889999999999999999997654 79999999866552 23566677776643322211111100 0011
Q ss_pred HHHh--hcCCceEEEEeCCC
Q 044579 278 IKKR--LQRVKVLIVLDDVN 295 (1103)
Q Consensus 278 l~~~--L~~k~~LlVLDdv~ 295 (1103)
..++ -.+++++|++|++.
T Consensus 247 ~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 247 KAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred HHHHHHHcCCCEEEEEEChH
Confidence 1111 36799999999996
No 146
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.64 E-value=0.0005 Score=83.64 Aligned_cols=50 Identities=20% Similarity=0.329 Sum_probs=40.2
Q ss_pred CCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHH
Q 044579 178 STDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 178 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
|...+.++|++..++.+.+.+.. .....+.|+|++|+||||+|+.+++..
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~--~~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS--PFPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 44557899999999988776642 334579999999999999999998754
No 147
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.61 E-value=0.0017 Score=82.33 Aligned_cols=66 Identities=23% Similarity=0.324 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhcccCCCCCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhc
Q 044579 160 LVEKIVEDISKKLEDMSESTDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISR 231 (1103)
Q Consensus 160 ~i~~iv~~i~~~l~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (1103)
.+++...+...+. .+...+.+|||+.+++++.+.|.... ...+.++|.+|+|||+||+.++.++..
T Consensus 160 ~l~~~~~~l~~~~----r~~~l~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 160 ALKKYTIDLTERA----EQGKLDPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred HHHHHhhhHHHHH----hcCCCCcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 4555555554443 23445679999999999999887432 335669999999999999999998754
No 148
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=97.60 E-value=0.00013 Score=70.02 Aligned_cols=89 Identities=21% Similarity=0.417 Sum_probs=47.2
Q ss_pred ccEEEcCccccccCchHHHHHHHHHhC-------CCeE----------EeeCccccCCCcchHHHHHHHhhcceEEEEec
Q 044579 10 YEVFLSFRGEDTRNGFTSHLAAALHRK-------QIQF----------FIDDEELKKGDEISPALSNAIESSDISIIIFS 72 (1103)
Q Consensus 10 ~dvfis~~~~d~~~~~~~~l~~~L~~~-------g~~~----------~~d~~~~~~g~~~~~~~~~~i~~s~~~i~v~S 72 (1103)
|.|||||++.|.. ..+..|...+... .+.. +.+..+....+.|...|.++|.+|.+.||++|
T Consensus 1 ~~vFIS~~~~d~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig 79 (130)
T PF08937_consen 1 YKVFISYSHDDDD-WYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG 79 (130)
T ss_dssp ----------THH--HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred CCccccccccCcH-HHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence 6799999999865 3677777777763 2211 11222223345789999999999999999999
Q ss_pred CCccCchhhHHHHHHHHHhhhcCCcEEEEEE
Q 044579 73 KGYASSRWCLNELVKILDCKKMNAQIVIPVF 103 (1103)
Q Consensus 73 ~~y~~s~wc~~El~~~~~~~~~~~~~v~pif 103 (1103)
++-..|+|+-.|+..+++. +..|+-|.
T Consensus 80 ~~T~~s~wV~~EI~~A~~~----~~~Ii~V~ 106 (130)
T PF08937_consen 80 PNTAKSKWVNWEIEYALKK----GKPIIGVY 106 (130)
T ss_dssp TT----HHHHHHHHHHTTT-------EEEEE
T ss_pred CCcccCcHHHHHHHHHHHC----CCCEEEEE
Confidence 9999999999999988763 33466654
No 149
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.60 E-value=0.002 Score=78.20 Aligned_cols=196 Identities=15% Similarity=0.150 Sum_probs=108.2
Q ss_pred CCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccC-CceEEEEechhhhcccChHHHHH
Q 044579 178 STDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHF-QGKCFMANVREKANKMGVIHVRD 256 (1103)
Q Consensus 178 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~~~~~~~~~~~~ 256 (1103)
|.....++|.+.-++.|..++..+. -.+.+.++|..|+||||+|+.+++.+-... .... ....+.-...+
T Consensus 12 P~~f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~--------~~~Cg~C~~C~ 82 (620)
T PRK14948 12 PQRFDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPT--------PEPCGKCELCR 82 (620)
T ss_pred CCcHhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCC--------CCCCcccHHHH
Confidence 3455778999999999998887432 235678999999999999999998763321 1000 00001111111
Q ss_pred HHHHhhhCCCCcc-----ccccchHHHHHhh-----cCCceEEEEeCCCC-CHhHHHHHhCCCCccCCCcEEEEEeCch-
Q 044579 257 EVISQVLGENLKI-----GTLIVPQNIKKRL-----QRVKVLIVLDDVND-EFTQLESLAGGVDRFSPGSRIVITTRDK- 324 (1103)
Q Consensus 257 ~ll~~l~~~~~~~-----~~~~~~~~l~~~L-----~~k~~LlVLDdv~~-~~~~l~~l~~~~~~~~~gs~IIiTTR~~- 324 (1103)
.+......+-... ...+..+.+.+.+ .+++-++|+|+++. ..+..+.|+..+........+|++|.+.
T Consensus 83 ~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~ 162 (620)
T PRK14948 83 AIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQ 162 (620)
T ss_pred HHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChh
Confidence 1111100000000 0000111111111 24456889999973 2344666666555444555555555443
Q ss_pred hhHhhc-CcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhHHHH
Q 044579 325 QVLDKC-GVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLALEV 384 (1103)
Q Consensus 325 ~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 384 (1103)
.+.... .....+++..++.++..+.+.+.+-..+... ..+.+..+++.++|.+..+..
T Consensus 163 ~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~i--s~~al~~La~~s~G~lr~A~~ 221 (620)
T PRK14948 163 RVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEI--EPEALTLVAQRSQGGLRDAES 221 (620)
T ss_pred hhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHcCCCHHHHHH
Confidence 333322 2346788899999998888877664322221 124577889999998854433
No 150
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.60 E-value=0.004 Score=75.56 Aligned_cols=179 Identities=15% Similarity=0.176 Sum_probs=107.2
Q ss_pred CCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhcc-----------------------CC
Q 044579 178 STDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRH-----------------------FQ 234 (1103)
Q Consensus 178 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----------------------F~ 234 (1103)
|...+++||.+.-++.|...+..+. -.+.+.++|+.|+||||+|+.++..+-.. |+
T Consensus 13 P~~f~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 3455789999999999998886332 34568899999999999999999876311 11
Q ss_pred ceEEEEechhhhcccChHHHHHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCC-CHhHHHHHhCCCCccCC
Q 044579 235 GKCFMANVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVND-EFTQLESLAGGVDRFSP 313 (1103)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~-~~~~l~~l~~~~~~~~~ 313 (1103)
.. .+. .....++.. .++++.++... -..+++=++|+|+++. .....+.|...+.....
T Consensus 92 ~~-~ld----~~~~~~vd~-Ir~li~~~~~~---------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~ 150 (614)
T PRK14971 92 IH-ELD----AASNNSVDD-IRNLIEQVRIP---------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPS 150 (614)
T ss_pred eE-Eec----ccccCCHHH-HHHHHHHHhhC---------------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCCC
Confidence 10 010 000111111 11111111000 0123455789999973 23446666666555556
Q ss_pred CcEEEEEe-CchhhHhhc-CcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChh
Q 044579 314 GSRIVITT-RDKQVLDKC-GVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPL 380 (1103)
Q Consensus 314 gs~IIiTT-R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL 380 (1103)
.+.+|++| +...+.... ....++++.+++.++..+.+...+-..+... ..+.+..|++.++|..-
T Consensus 151 ~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i--~~~al~~La~~s~gdlr 217 (614)
T PRK14971 151 YAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITA--EPEALNVIAQKADGGMR 217 (614)
T ss_pred CeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHH
Confidence 66665554 444444332 3356899999999999998887664433221 22467788889998764
No 151
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.58 E-value=0.0019 Score=68.30 Aligned_cols=192 Identities=17% Similarity=0.243 Sum_probs=112.8
Q ss_pred CCCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHh--ccCCceEEEEechhhhcccChHHH
Q 044579 177 ESTDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQIS--RHFQGKCFMANVREKANKMGVIHV 254 (1103)
Q Consensus 177 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~--~~F~~~~~~~~~~~~~~~~~~~~~ 254 (1103)
.|...++++|.+..+..|...+.. ........||++|.|||+-|++++..+- +-|+.++.=.++ +...|..-.
T Consensus 31 rPkt~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lna---SderGisvv 105 (346)
T KOG0989|consen 31 RPKTFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNA---SDERGISVV 105 (346)
T ss_pred CCCcHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcc---cccccccch
Confidence 345567899999999998888763 5677889999999999999999998652 345544332222 222222210
Q ss_pred HH--HHHHhhhCCCCccccccchHHHHHhhcCCc-eEEEEeCCCC-CHhHHHHHhCCCCccCCCcEEE-EEeCchhhHhh
Q 044579 255 RD--EVISQVLGENLKIGTLIVPQNIKKRLQRVK-VLIVLDDVND-EFTQLESLAGGVDRFSPGSRIV-ITTRDKQVLDK 329 (1103)
Q Consensus 255 ~~--~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~-~LlVLDdv~~-~~~~l~~l~~~~~~~~~gs~II-iTTR~~~v~~~ 329 (1103)
.. .-++++....... ... ..++ =.+|||+++. ..+.|.++......+...+|.| ||+--..+...
T Consensus 106 r~Kik~fakl~~~~~~~---------~~~-~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~p 175 (346)
T KOG0989|consen 106 REKIKNFAKLTVLLKRS---------DGY-PCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRP 175 (346)
T ss_pred hhhhcCHHHHhhccccc---------cCC-CCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChH
Confidence 00 1111111110000 000 0112 4789999973 2455777777666666666654 44432222211
Q ss_pred c-CcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCCh-hHHHHH
Q 044579 330 C-GVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNP-LALEVL 385 (1103)
Q Consensus 330 ~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P-Lal~~l 385 (1103)
. ....-+..++|.+++..+-+...|-.++.+.+ .+..+.|++.++|-- -|+.++
T Consensus 176 i~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d--~~al~~I~~~S~GdLR~Ait~L 231 (346)
T KOG0989|consen 176 LVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDID--DDALKLIAKISDGDLRRAITTL 231 (346)
T ss_pred HHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHcCCcHHHHHHHH
Confidence 1 22346788999999998888887755544432 366788888888843 444443
No 152
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.57 E-value=0.0029 Score=80.47 Aligned_cols=169 Identities=12% Similarity=0.146 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHhcccCCCCCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccC------
Q 044579 160 LVEKIVEDISKKLEDMSESTDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHF------ 233 (1103)
Q Consensus 160 ~i~~iv~~i~~~l~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------ 233 (1103)
.+++...+...+. .+...+.+|||+.+++++...|.... ...+.++|.+|+|||++|+.++.++...+
T Consensus 155 ~l~~~~~~l~~~~----~~~~~~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~ 228 (852)
T TIGR03346 155 ALEKYARDLTERA----REGKLDPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLK 228 (852)
T ss_pred HHHHHhhhHHHHh----hCCCCCcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhc
Confidence 4444444444332 33445679999999999999886433 34556899999999999999999875432
Q ss_pred CceEEEEechhhhcccChHHHHHHHHHhhhCCCCccccccchHHHHHhh--cCCceEEEEeCCCCCHh----------HH
Q 044579 234 QGKCFMANVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRL--QRVKVLIVLDDVNDEFT----------QL 301 (1103)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L--~~k~~LlVLDdv~~~~~----------~l 301 (1103)
...+|..++..... +.............+.+.+ .+++++|++|+++ ... ..
T Consensus 229 ~~~~~~l~~~~l~a----------------~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih-~l~~~g~~~~~~d~~ 291 (852)
T TIGR03346 229 NKRLLALDMGALIA----------------GAKYRGEFEERLKAVLNEVTKSEGQIILFIDELH-TLVGAGKAEGAMDAG 291 (852)
T ss_pred CCeEEEeeHHHHhh----------------cchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHH-HhhcCCCCcchhHHH
Confidence 23344433221100 0000000000111122222 2468999999996 221 12
Q ss_pred HHHhCCCCccCCC-cEEEEEeCchhhHh-------hcCcceEEEccCCChhHHHHHHHHhh
Q 044579 302 ESLAGGVDRFSPG-SRIVITTRDKQVLD-------KCGVSYIYKVKRLEHDNALELFCRKA 354 (1103)
Q Consensus 302 ~~l~~~~~~~~~g-s~IIiTTR~~~v~~-------~~~~~~~~~l~~L~~~ea~~Lf~~~a 354 (1103)
+.+.+.+ ..| -++|-+|...+.-. .......+.++..+.++..+++....
T Consensus 292 ~~Lk~~l---~~g~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 292 NMLKPAL---ARGELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHhchhh---hcCceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 2233222 223 34454444332211 01122467899999999999887653
No 153
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.55 E-value=0.00094 Score=84.65 Aligned_cols=171 Identities=15% Similarity=0.146 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhcc-----C
Q 044579 159 ELVEKIVEDISKKLEDMSESTDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRH-----F 233 (1103)
Q Consensus 159 ~~i~~iv~~i~~~l~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----F 233 (1103)
..+++...++...-.. ...+.++||+++++++.+.|.... ..-+.++|.+|+|||++|+.++.++... .
T Consensus 160 ~~l~~~~~~l~~~a~~----~~~~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l 233 (821)
T CHL00095 160 PTLEEFGTNLTKEAID----GNLDPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDIL 233 (821)
T ss_pred hHHHHHHHHHHHHHHc----CCCCCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhh
Confidence 3555555555544222 234568999999999999997433 3356799999999999999999986532 1
Q ss_pred -CceEEEEechhhhcccChHHHHHHHHHhhhCCCCccccccchH-HHHHhhcCCceEEEEeCCCC---------CHhHHH
Q 044579 234 -QGKCFMANVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQ-NIKKRLQRVKVLIVLDDVND---------EFTQLE 302 (1103)
Q Consensus 234 -~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~-~l~~~L~~k~~LlVLDdv~~---------~~~~l~ 302 (1103)
...+|..+...... +............ .+.+.-..++++|++|+++. ..+..+
T Consensus 234 ~~~~i~~l~~~~l~a----------------g~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~ 297 (821)
T CHL00095 234 EDKLVITLDIGLLLA----------------GTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAAN 297 (821)
T ss_pred cCCeEEEeeHHHHhc----------------cCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHH
Confidence 23444443321110 1000000000011 22222235689999999851 001112
Q ss_pred HHhCCCCccCCCcEEEEEeCchhhHh------h-cCcceEEEccCCChhHHHHHHHHh
Q 044579 303 SLAGGVDRFSPGSRIVITTRDKQVLD------K-CGVSYIYKVKRLEHDNALELFCRK 353 (1103)
Q Consensus 303 ~l~~~~~~~~~gs~IIiTTR~~~v~~------~-~~~~~~~~l~~L~~~ea~~Lf~~~ 353 (1103)
.|.+.+. ...-++|.+|...+... . ......++++..+.++...++...
T Consensus 298 lLkp~l~--rg~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 298 ILKPALA--RGELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HhHHHHh--CCCcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 2222211 12245555555443211 1 122356788889999988887653
No 154
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.54 E-value=0.00018 Score=76.69 Aligned_cols=89 Identities=18% Similarity=0.163 Sum_probs=57.8
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhc-cCCceEEEEechhhhcccChHHHHHHHHHhhhCCCCcccccc------chH-
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISR-HFQGKCFMANVREKANKMGVIHVRDEVISQVLGENLKIGTLI------VPQ- 276 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~------~~~- 276 (1103)
...++|.|++|+|||||++.+++.+.. +|+..+|+..+++. ..++.++++.+...+........... ...
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er--~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDER--PEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCC--CccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999997644 68888898755332 24677777777444322221111111 011
Q ss_pred HHHH-hhcCCceEEEEeCCC
Q 044579 277 NIKK-RLQRVKVLIVLDDVN 295 (1103)
Q Consensus 277 ~l~~-~L~~k~~LlVLDdv~ 295 (1103)
.... +-.++++++++|++.
T Consensus 94 ~a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHHCCCCEEEEEECHH
Confidence 1111 135789999999996
No 155
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.54 E-value=0.00023 Score=82.11 Aligned_cols=156 Identities=18% Similarity=0.287 Sum_probs=90.2
Q ss_pred CCCCccccchhHHHHHHhhcc-----------cCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcc
Q 044579 180 DLDGLVGLNTRIEEMKSLLCL-----------ESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANK 248 (1103)
Q Consensus 180 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~ 248 (1103)
...++.|.+..++++.+.+.. +-...+-|.++|++|.|||++|+++++.....|- .+.. +
T Consensus 181 ~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi---~V~~----s-- 251 (438)
T PTZ00361 181 SYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFL---RVVG----S-- 251 (438)
T ss_pred CHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEE---EEec----c--
Confidence 346678999999998877641 1123456889999999999999999998765541 1110 0
Q ss_pred cChHHHHHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCCC------------Hh---HHHHHhCCCCcc--
Q 044579 249 MGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVNDE------------FT---QLESLAGGVDRF-- 311 (1103)
Q Consensus 249 ~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~------------~~---~l~~l~~~~~~~-- 311 (1103)
. +.....+... ......+.......+.+|+||+++.- .+ .+..+...++.+
T Consensus 252 -e-------L~~k~~Ge~~----~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~ 319 (438)
T PTZ00361 252 -E-------LIQKYLGDGP----KLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS 319 (438)
T ss_pred -h-------hhhhhcchHH----HHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc
Confidence 0 0111111000 00000222222456789999987510 00 111222222211
Q ss_pred CCCcEEEEEeCchhhHhh-----cCcceEEEccCCChhHHHHHHHHhhhc
Q 044579 312 SPGSRIVITTRDKQVLDK-----CGVSYIYKVKRLEHDNALELFCRKAIR 356 (1103)
Q Consensus 312 ~~gs~IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 356 (1103)
..+.+||+||.....+.. ...+..++++..+.++..++|..+..+
T Consensus 320 ~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 320 RGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK 369 (438)
T ss_pred cCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 235678888875544332 134678899999999999999987643
No 156
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.54 E-value=0.0014 Score=76.46 Aligned_cols=153 Identities=14% Similarity=0.141 Sum_probs=85.5
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHHHHHHhhhCCCCccccccchHHHHHhhcCC
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRV 285 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k 285 (1103)
..+.|+|..|+|||+||+++++.+......++++.. ..+...+...+... ....++...+ +
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~----------~~f~~~~~~~l~~~--------~~~~f~~~~~-~ 202 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRS----------ELFTEHLVSAIRSG--------EMQRFRQFYR-N 202 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeH----------HHHHHHHHHHHhcc--------hHHHHHHHcc-c
Confidence 568899999999999999999987655444555541 12222333332211 1113444333 3
Q ss_pred ceEEEEeCCCCC---HhHHHHHhCCCCc-cCCCcEEEEEeCch-h--------hHhhcCcceEEEccCCChhHHHHHHHH
Q 044579 286 KVLIVLDDVNDE---FTQLESLAGGVDR-FSPGSRIVITTRDK-Q--------VLDKCGVSYIYKVKRLEHDNALELFCR 352 (1103)
Q Consensus 286 ~~LlVLDdv~~~---~~~l~~l~~~~~~-~~~gs~IIiTTR~~-~--------v~~~~~~~~~~~l~~L~~~ea~~Lf~~ 352 (1103)
.-+|++||+..- ....+.+...++. ...|..||+||... . +...+.....+++.+++.++..+++.+
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 457888998521 1112222222111 12456788888542 1 122233446889999999999999988
Q ss_pred hhhccCCCChhHHHHHHHHHHHhCCCh
Q 044579 353 KAIRQNSRSQDLLELSKEIVGYAKGNP 379 (1103)
Q Consensus 353 ~a~~~~~~~~~~~~~~~~i~~~~~G~P 379 (1103)
++-.....- .+++..-|++.+.|.-
T Consensus 283 k~~~~~~~l--~~evl~~la~~~~~di 307 (445)
T PRK12422 283 KAEALSIRI--EETALDFLIEALSSNV 307 (445)
T ss_pred HHHHcCCCC--CHHHHHHHHHhcCCCH
Confidence 874332111 1244555555555443
No 157
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.51 E-value=0.0096 Score=66.23 Aligned_cols=193 Identities=13% Similarity=0.114 Sum_probs=107.8
Q ss_pred CCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhc---------------cCCceEEEEechhhh
Q 044579 182 DGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISR---------------HFQGKCFMANVREKA 246 (1103)
Q Consensus 182 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~---------------~F~~~~~~~~~~~~~ 246 (1103)
++++|.+.-.+.+...+..+. -.+...++|..|+||+++|.++++.+-. .++...|+......
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~- 81 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH- 81 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc-
Confidence 467899999999998886432 2478899999999999999999986522 12333444321000
Q ss_pred cccChHHHHHHHHHhhh--CCCCccccccchHHHHHhh-----cCCceEEEEeCCCC-CHhHHHHHhCCCCccCCCcEEE
Q 044579 247 NKMGVIHVRDEVISQVL--GENLKIGTLIVPQNIKKRL-----QRVKVLIVLDDVND-EFTQLESLAGGVDRFSPGSRIV 318 (1103)
Q Consensus 247 ~~~~~~~~~~~ll~~l~--~~~~~~~~~~~~~~l~~~L-----~~k~~LlVLDdv~~-~~~~l~~l~~~~~~~~~gs~II 318 (1103)
+..... ...+.... ......-..+....+.+.+ .+++-++|+|+++. +.....+|+..+.... .+.+|
T Consensus 82 ~g~~~~---~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fI 157 (314)
T PRK07399 82 QGKLIT---ASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLI 157 (314)
T ss_pred cccccc---hhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEE
Confidence 000000 00000000 0000000001111333333 34567889999863 2344555655555444 44555
Q ss_pred EEe-CchhhHhhc-CcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhHHHHH
Q 044579 319 ITT-RDKQVLDKC-GVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLALEVL 385 (1103)
Q Consensus 319 iTT-R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l 385 (1103)
++| +...++... .....+++.+++.++..+.+...+..... ......++..++|.|..+..+
T Consensus 158 Li~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~-----~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 158 LIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEIL-----NINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccc-----hhHHHHHHHHcCCCHHHHHHH
Confidence 554 444444433 34578999999999999999876421110 111357889999999665443
No 158
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.50 E-value=0.0028 Score=70.81 Aligned_cols=94 Identities=12% Similarity=0.156 Sum_probs=62.2
Q ss_pred ceEEEEeCCCC-CHhHHHHHhCCCCccCCCcEEEEEeCchh-hHhhc-CcceEEEccCCChhHHHHHHHHhhhccCCCCh
Q 044579 286 KVLIVLDDVND-EFTQLESLAGGVDRFSPGSRIVITTRDKQ-VLDKC-GVSYIYKVKRLEHDNALELFCRKAIRQNSRSQ 362 (1103)
Q Consensus 286 ~~LlVLDdv~~-~~~~l~~l~~~~~~~~~gs~IIiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~ 362 (1103)
+=++|+|+++. +......+...+....+++.+|+||.+.. ++... .....+.+.+++.+++.+.+.... . ..
T Consensus 107 ~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~-~~--- 181 (328)
T PRK05707 107 RKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-P-ES--- 181 (328)
T ss_pred CeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-c-cC---
Confidence 33446799973 34556667666665567788888887653 33332 334678999999999999997653 1 11
Q ss_pred hHHHHHHHHHHHhCCChhHHHHH
Q 044579 363 DLLELSKEIVGYAKGNPLALEVL 385 (1103)
Q Consensus 363 ~~~~~~~~i~~~~~G~PLal~~l 385 (1103)
..+.+..++..++|.|+....+
T Consensus 182 -~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 -DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -ChHHHHHHHHHcCCCHHHHHHH
Confidence 1234567788999999765544
No 159
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.50 E-value=0.0038 Score=75.14 Aligned_cols=193 Identities=12% Similarity=0.125 Sum_probs=106.9
Q ss_pred CCCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHH
Q 044579 177 ESTDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRD 256 (1103)
Q Consensus 177 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~ 256 (1103)
.|...+++||.+.-++.|...+..+. -.+.+.++|+.|+||||+|+.++..+-..-... ....+.-....
T Consensus 11 rP~~f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~---------~~pC~~C~~C~ 80 (559)
T PRK05563 11 RPQTFEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD---------GEPCNECEICK 80 (559)
T ss_pred CCCcHHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC---------CCCCCccHHHH
Confidence 44566789999999999999887433 346677899999999999999998653210000 00000000011
Q ss_pred HHHHhhhCCCCcc-----ccccchHHHHHh-----hcCCceEEEEeCCCCC-HhHHHHHhCCCCccCCCcEEEEEe-Cch
Q 044579 257 EVISQVLGENLKI-----GTLIVPQNIKKR-----LQRVKVLIVLDDVNDE-FTQLESLAGGVDRFSPGSRIVITT-RDK 324 (1103)
Q Consensus 257 ~ll~~l~~~~~~~-----~~~~~~~~l~~~-----L~~k~~LlVLDdv~~~-~~~l~~l~~~~~~~~~gs~IIiTT-R~~ 324 (1103)
.+......+-... ...+....+.+. ..+++-++|+|+++.- ......|...+........+|++| ...
T Consensus 81 ~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ 160 (559)
T PRK05563 81 AITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPH 160 (559)
T ss_pred HHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChh
Confidence 1110000000000 000011122222 1345668899999732 334666665555444455555544 433
Q ss_pred hhHhhc-CcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhH
Q 044579 325 QVLDKC-GVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLA 381 (1103)
Q Consensus 325 ~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLa 381 (1103)
.+.... .....++..+++.++..+.+...+-..+...+ .+.+..|++.++|.+..
T Consensus 161 ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~--~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 161 KIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE--DEALRLIARAAEGGMRD 216 (559)
T ss_pred hCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHH
Confidence 333222 23467889999999998888877643332221 35567788888887753
No 160
>CHL00181 cbbX CbbX; Provisional
Probab=97.48 E-value=0.0022 Score=70.50 Aligned_cols=132 Identities=12% Similarity=0.152 Sum_probs=72.3
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHhcc-C-CceEEEEechhhhcccChHHHHHHHHHhhhCCCCccccccchHHHHHhhc
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQISRH-F-QGKCFMANVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQ 283 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-F-~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 283 (1103)
..+.++|.+|+||||+|+.+++..... + ...-|+.. + . ..+.....+.... .....+..
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v----~----~----~~l~~~~~g~~~~----~~~~~l~~--- 120 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTV----T----R----DDLVGQYIGHTAP----KTKEVLKK--- 120 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEe----c----H----HHHHHHHhccchH----HHHHHHHH---
Confidence 458899999999999999998864321 1 11112221 1 0 1122222221100 00112222
Q ss_pred CCceEEEEeCCCC----------CHhHHHHHhCCCCccCCCcEEEEEeCchhhHh--------hcCcceEEEccCCChhH
Q 044579 284 RVKVLIVLDDVND----------EFTQLESLAGGVDRFSPGSRIVITTRDKQVLD--------KCGVSYIYKVKRLEHDN 345 (1103)
Q Consensus 284 ~k~~LlVLDdv~~----------~~~~l~~l~~~~~~~~~gs~IIiTTR~~~v~~--------~~~~~~~~~l~~L~~~e 345 (1103)
...-+|++|+++. ..+..+.+...+.......+||.++....+.. .-.....+++++++.+|
T Consensus 121 a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~e 200 (287)
T CHL00181 121 AMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEE 200 (287)
T ss_pred ccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHH
Confidence 1234899999962 12234444444443345567777775433211 11345688999999999
Q ss_pred HHHHHHHhhhc
Q 044579 346 ALELFCRKAIR 356 (1103)
Q Consensus 346 a~~Lf~~~a~~ 356 (1103)
..+++...+-.
T Consensus 201 l~~I~~~~l~~ 211 (287)
T CHL00181 201 LLQIAKIMLEE 211 (287)
T ss_pred HHHHHHHHHHH
Confidence 99998887743
No 161
>CHL00176 ftsH cell division protein; Validated
Probab=97.47 E-value=0.0023 Score=77.68 Aligned_cols=173 Identities=17% Similarity=0.244 Sum_probs=96.9
Q ss_pred CCCCccccchhHHHHHHhhc---c-------cCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhccc
Q 044579 180 DLDGLVGLNTRIEEMKSLLC---L-------ESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKM 249 (1103)
Q Consensus 180 ~~~~~vGr~~~~~~l~~~L~---~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 249 (1103)
..++++|.++..+++.+.+. . +....+-|.++|++|.|||++|++++......| +. + +
T Consensus 181 ~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~-----i~-i---s--- 248 (638)
T CHL00176 181 TFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPF-----FS-I---S--- 248 (638)
T ss_pred CHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe-----ee-c---c---
Confidence 34678898888777766543 1 112245689999999999999999998653322 21 0 0
Q ss_pred ChHHHHHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCCCH----------------hHHHHHhCCCCcc--
Q 044579 250 GVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVNDEF----------------TQLESLAGGVDRF-- 311 (1103)
Q Consensus 250 ~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~----------------~~l~~l~~~~~~~-- 311 (1103)
...+.. ...+. ........+.......+.+|++||++ .. ..+..+...++.+
T Consensus 249 -~s~f~~----~~~g~----~~~~vr~lF~~A~~~~P~ILfIDEID-~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~ 318 (638)
T CHL00176 249 -GSEFVE----MFVGV----GAARVRDLFKKAKENSPCIVFIDEID-AVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG 318 (638)
T ss_pred -HHHHHH----Hhhhh----hHHHHHHHHHHHhcCCCcEEEEecch-hhhhcccCCCCCCcHHHHHHHHHHHhhhccccC
Confidence 000000 00000 00001113344445678999999996 22 1133343333222
Q ss_pred CCCcEEEEEeCchhhHhh-----cCcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCC
Q 044579 312 SPGSRIVITTRDKQVLDK-----CGVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKG 377 (1103)
Q Consensus 312 ~~gs~IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G 377 (1103)
..+..||.||...+.... -..+..+.++..+.++-.+++..++-..... .......+++.+.|
T Consensus 319 ~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~---~d~~l~~lA~~t~G 386 (638)
T CHL00176 319 NKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLS---PDVSLELIARRTPG 386 (638)
T ss_pred CCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccc---hhHHHHHHHhcCCC
Confidence 245567777765443321 1345788999999999999998877432211 12234556666666
No 162
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.46 E-value=0.00011 Score=55.11 Aligned_cols=37 Identities=38% Similarity=0.567 Sum_probs=30.2
Q ss_pred CCCCEEeCCCCCccccCccccCCCCCCEEeccCCcCC
Q 044579 810 SSLQWLDLSGNNFESLPSSIKQLSQLRKLDLSNCNML 846 (1103)
Q Consensus 810 ~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~l 846 (1103)
++|++|+|++|+|+.+|..+.+|++|+.|++++|++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 4788999999999999887899999999999999754
No 163
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.0015 Score=70.59 Aligned_cols=169 Identities=19% Similarity=0.349 Sum_probs=99.3
Q ss_pred CCccccchhHHHHHHhhcc-----------cCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccC
Q 044579 182 DGLVGLNTRIEEMKSLLCL-----------ESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMG 250 (1103)
Q Consensus 182 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 250 (1103)
..+=|.++++++|.+.... +=...+=|.+||++|.|||-||++|+++....| +..++
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtF-----Irvvg------- 218 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATF-----IRVVG------- 218 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceE-----EEecc-------
Confidence 3445677777777665431 112356688999999999999999999876554 43221
Q ss_pred hHHHHHHHHHhhhCCCCccccccchHHHHHhh----cCCceEEEEeCCCC------------CHh---HHHHHhCCCCcc
Q 044579 251 VIHVRDEVISQVLGENLKIGTLIVPQNIKKRL----QRVKVLIVLDDVND------------EFT---QLESLAGGVDRF 311 (1103)
Q Consensus 251 ~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L----~~k~~LlVLDdv~~------------~~~---~l~~l~~~~~~~ 311 (1103)
.++.....|+.. ..+++.. .+.+..|.+|.+|. +.+ .+-.|+..++.|
T Consensus 219 -----SElVqKYiGEGa--------RlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGF 285 (406)
T COG1222 219 -----SELVQKYIGEGA--------RLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGF 285 (406)
T ss_pred -----HHHHHHHhccch--------HHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCC
Confidence 123333333221 1222221 35689999999862 111 122344455555
Q ss_pred CC--CcEEEEEeCchhh-----HhhcCcceEEEccCCChhHHHHHHHHhhhccCCC-ChhHHHHHHHHHHHhCCCh
Q 044579 312 SP--GSRIVITTRDKQV-----LDKCGVSYIYKVKRLEHDNALELFCRKAIRQNSR-SQDLLELSKEIVGYAKGNP 379 (1103)
Q Consensus 312 ~~--gs~IIiTTR~~~v-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~G~P 379 (1103)
.+ ..+||..|-..++ +..-..++.++++.-+.+.-.++|.-|+-+.... .-+++ .+++.+.|.-
T Consensus 286 D~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e----~la~~~~g~s 357 (406)
T COG1222 286 DPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLE----LLARLTEGFS 357 (406)
T ss_pred CCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHH----HHHHhcCCCc
Confidence 44 4578887764443 3333567889999777777788888887554432 22333 4555566554
No 164
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.45 E-value=0.0029 Score=69.51 Aligned_cols=130 Identities=13% Similarity=0.112 Sum_probs=70.4
Q ss_pred EEEEeecCCChhHHHHHHHHHHHhccC--CceEEEEechhhhcccChHHHHHHHHHhhhCCCCccccccchHHHHHhhcC
Q 044579 207 IVGIWGMGGIGKTTIASVVFHQISRHF--QGKCFMANVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQR 284 (1103)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~~~F--~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~ 284 (1103)
-+.++|.+|.||||+|+.++..+...- ....|+.. . . .+++..+.+... ......+.+ .
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v----~----~----~~l~~~~~g~~~----~~~~~~~~~---a 120 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSV----T----R----DDLVGQYIGHTA----PKTKEILKR---A 120 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEe----c----H----HHHhHhhcccch----HHHHHHHHH---c
Confidence 588999999999999999888654321 11123321 1 0 122222222110 001112222 1
Q ss_pred CceEEEEeCCCCC----------HhHHHHHhCCCCccCCCcEEEEEeCchhhHhhc--------CcceEEEccCCChhHH
Q 044579 285 VKVLIVLDDVNDE----------FTQLESLAGGVDRFSPGSRIVITTRDKQVLDKC--------GVSYIYKVKRLEHDNA 346 (1103)
Q Consensus 285 k~~LlVLDdv~~~----------~~~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~~--------~~~~~~~l~~L~~~ea 346 (1103)
..-+|+||+++.- .+..+.+...+.....+.+||.++-....-... .....+++++++.+|.
T Consensus 121 ~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl 200 (284)
T TIGR02880 121 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAEL 200 (284)
T ss_pred cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHH
Confidence 3358889999611 122344444444334556777776533221110 2245789999999999
Q ss_pred HHHHHHhhh
Q 044579 347 LELFCRKAI 355 (1103)
Q Consensus 347 ~~Lf~~~a~ 355 (1103)
.+++...+-
T Consensus 201 ~~I~~~~l~ 209 (284)
T TIGR02880 201 LVIAGLMLK 209 (284)
T ss_pred HHHHHHHHH
Confidence 999888763
No 165
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.42 E-value=0.0025 Score=75.67 Aligned_cols=155 Identities=15% Similarity=0.244 Sum_probs=88.9
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHhccCC--ceEEEEechhhhcccChHHHHHHHHHhhhCCCCccccccchHHHHHhhc
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQISRHFQ--GKCFMANVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQ 283 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~--~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 283 (1103)
..+.|||..|.|||.|++++++.....+. .+.|+. . ..+..++...+... ....++++++
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit-a---------eef~~el~~al~~~--------~~~~f~~~y~ 376 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS-S---------EEFTNEFINSIRDG--------KGDSFRRRYR 376 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-H---------HHHHHHHHHHHHhc--------cHHHHHHHhh
Confidence 35899999999999999999998765432 234443 1 22223333322211 1113444444
Q ss_pred CCceEEEEeCCCCC--HhHH-HHHhCCCCc-cCCCcEEEEEeCch---------hhHhhcCcceEEEccCCChhHHHHHH
Q 044579 284 RVKVLIVLDDVNDE--FTQL-ESLAGGVDR-FSPGSRIVITTRDK---------QVLDKCGVSYIYKVKRLEHDNALELF 350 (1103)
Q Consensus 284 ~k~~LlVLDdv~~~--~~~l-~~l~~~~~~-~~~gs~IIiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf 350 (1103)
. .=+|||||++.- .+.+ +.+...++. ...|..|||||+.. .+...+...-+++|...+.+.-.+++
T Consensus 377 ~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL 455 (617)
T PRK14086 377 E-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAIL 455 (617)
T ss_pred c-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHH
Confidence 3 347888999521 1111 222222211 13466788888753 22233445568899999999999999
Q ss_pred HHhhhccCCCChhHHHHHHHHHHHhCCChhH
Q 044579 351 CRKAIRQNSRSQDLLELSKEIVGYAKGNPLA 381 (1103)
Q Consensus 351 ~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLa 381 (1103)
.+++-...... ..++..-|++.+.+..-.
T Consensus 456 ~kka~~r~l~l--~~eVi~yLa~r~~rnvR~ 484 (617)
T PRK14086 456 RKKAVQEQLNA--PPEVLEFIASRISRNIRE 484 (617)
T ss_pred HHHHHhcCCCC--CHHHHHHHHHhccCCHHH
Confidence 98874432222 235566666666555433
No 166
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.42 E-value=0.00031 Score=78.47 Aligned_cols=89 Identities=16% Similarity=0.133 Sum_probs=60.3
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhcc-CCceEEEEechhhhcccChHHHHHHHHHhhhCCCCccccccch------H-
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISRH-FQGKCFMANVREKANKMGVIHVRDEVISQVLGENLKIGTLIVP------Q- 276 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~------~- 276 (1103)
-+.++|+|.+|.|||||++.+++.+... |+..+|+..+++. ...+.++++.++..+............. .
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER--~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDER--PEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCC--CccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 4579999999999999999999987655 9989998865332 3467788888765544333222111110 0
Q ss_pred HH-HHhhcCCceEEEEeCCC
Q 044579 277 NI-KKRLQRVKVLIVLDDVN 295 (1103)
Q Consensus 277 ~l-~~~L~~k~~LlVLDdv~ 295 (1103)
.. ..+-++++++|++|.+.
T Consensus 246 ~Ae~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHHHHcCCCeEEEEEChh
Confidence 11 11236899999999996
No 167
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.40 E-value=0.0068 Score=63.18 Aligned_cols=57 Identities=21% Similarity=0.419 Sum_probs=41.9
Q ss_pred CCCCCCCccccchhHHHHHHhhc--ccCCCeEEEEEeecCCChhHHHHHHHHHHHhccC
Q 044579 177 ESTDLDGLVGLNTRIEEMKSLLC--LESHDVRIVGIWGMGGIGKTTIASVVFHQISRHF 233 (1103)
Q Consensus 177 ~~~~~~~~vGr~~~~~~l~~~L~--~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 233 (1103)
.+...+.++|.+.+.+.|.+-.. .......-|.+||..|.|||++++++.+.+..+-
T Consensus 22 ~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G 80 (249)
T PF05673_consen 22 DPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG 80 (249)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC
Confidence 34455789999999988754322 1122345678899999999999999999876553
No 168
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.34 E-value=0.0028 Score=70.73 Aligned_cols=217 Identities=17% Similarity=0.220 Sum_probs=120.2
Q ss_pred HHHHHHHhcccCCCCCCCCCccccchhHHHHHHhhcc--cCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCc--eEEE
Q 044579 164 IVEDISKKLEDMSESTDLDGLVGLNTRIEEMKSLLCL--ESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQG--KCFM 239 (1103)
Q Consensus 164 iv~~i~~~l~~~~~~~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~~ 239 (1103)
+-......+.. ...+..++||+.++..+.+++.. +.+..+.+-|.|-+|.|||.+...++.+....... ++++
T Consensus 135 ~~~~~~~~l~~---t~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~i 211 (529)
T KOG2227|consen 135 ISEQRSESLLN---TAPPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYI 211 (529)
T ss_pred HHHHHHHHHHh---cCCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEE
Confidence 44444444433 23456899999999999998873 34456789999999999999999999877655444 3455
Q ss_pred EechhhhcccChHHHHHHHHHhhhCCCCccccc-cchHHHHHhhcCC--ceEEEEeCCCCCHhH--HHHHhCCCCcc-CC
Q 044579 240 ANVREKANKMGVIHVRDEVISQVLGENLKIGTL-IVPQNIKKRLQRV--KVLIVLDDVNDEFTQ--LESLAGGVDRF-SP 313 (1103)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~-~~~~~l~~~L~~k--~~LlVLDdv~~~~~~--l~~l~~~~~~~-~~ 313 (1103)
.+. .-.....+...+...+.......+.. +....+.....+. .+|+|+|.+| .... -..+...+.|. -+
T Consensus 212 nc~----sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD-~L~tr~~~vLy~lFewp~lp 286 (529)
T KOG2227|consen 212 NCT----SLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMD-HLITRSQTVLYTLFEWPKLP 286 (529)
T ss_pred eec----cccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhh-HHhhcccceeeeehhcccCC
Confidence 422 11233455556665553222211111 1122444444333 5899999987 2221 11122222222 25
Q ss_pred CcEEEEEe---------CchhhHhh--cCcceEEEccCCChhHHHHHHHHhhhccCCC---ChhHHHHHHHHHHHhCCCh
Q 044579 314 GSRIVITT---------RDKQVLDK--CGVSYIYKVKRLEHDNALELFCRKAIRQNSR---SQDLLELSKEIVGYAKGNP 379 (1103)
Q Consensus 314 gs~IIiTT---------R~~~v~~~--~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~---~~~~~~~~~~i~~~~~G~P 379 (1103)
++|+|+.- |.-.-+.. .-....+..++.+.++-.+++..+.-..... ....+-.|++++.-.|.+-
T Consensus 287 ~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlR 366 (529)
T KOG2227|consen 287 NSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLR 366 (529)
T ss_pred cceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHH
Confidence 66655432 21111111 1224577788999999999999876322111 1233344455554455555
Q ss_pred hHHHHHHhh
Q 044579 380 LALEVLGSS 388 (1103)
Q Consensus 380 Lal~~lg~~ 388 (1103)
-|+.+.-+.
T Consensus 367 kaLdv~R~a 375 (529)
T KOG2227|consen 367 KALDVCRRA 375 (529)
T ss_pred HHHHHHHHH
Confidence 555555433
No 169
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.32 E-value=0.0031 Score=76.37 Aligned_cols=195 Identities=11% Similarity=0.123 Sum_probs=106.4
Q ss_pred CCCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhcc-C-CceEEEEechhhhcccChHHH
Q 044579 177 ESTDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRH-F-QGKCFMANVREKANKMGVIHV 254 (1103)
Q Consensus 177 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F-~~~~~~~~~~~~~~~~~~~~~ 254 (1103)
.|...+++||.+.-++.|...+..+ .-.+.+.++|..|+||||+|+.+++.+-.. . ... ..+....
T Consensus 11 RP~~f~~iiGq~~v~~~L~~~i~~~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~-----------~c~~c~~ 78 (576)
T PRK14965 11 RPQTFSDLTGQEHVSRTLQNAIDTG-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAE-----------PCNVCPP 78 (576)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCC-----------CCCccHH
Confidence 3455678999998889998888643 224567899999999999999999875321 1 000 0000000
Q ss_pred HHHHHHhhhCCCCcc-----ccccchHHHHHhh-----cCCceEEEEeCCCC-CHhHHHHHhCCCCccCCCcEEEEEe-C
Q 044579 255 RDEVISQVLGENLKI-----GTLIVPQNIKKRL-----QRVKVLIVLDDVND-EFTQLESLAGGVDRFSPGSRIVITT-R 322 (1103)
Q Consensus 255 ~~~ll~~l~~~~~~~-----~~~~~~~~l~~~L-----~~k~~LlVLDdv~~-~~~~l~~l~~~~~~~~~gs~IIiTT-R 322 (1103)
..++...-...-... ...+....+.+.+ .+++-++|+|+++. .....+.|...+....+.+.+|++| .
T Consensus 79 c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~ 158 (576)
T PRK14965 79 CVEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTE 158 (576)
T ss_pred HHHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCC
Confidence 000000000000000 0000011122211 23455788999973 2334566665555545566666555 4
Q ss_pred chhhHhhc-CcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCCh-hHHHHH
Q 044579 323 DKQVLDKC-GVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNP-LALEVL 385 (1103)
Q Consensus 323 ~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P-Lal~~l 385 (1103)
...+.... .....+++..++.++..+.+...+-..+... ..+....+++.++|.. .|+..+
T Consensus 159 ~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i--~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 159 PHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISI--SDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred hhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHcCCCHHHHHHHH
Confidence 44444332 2345788999999998888876653332221 2355677888888866 444443
No 170
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.32 E-value=0.00099 Score=64.12 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=21.1
Q ss_pred EEEeecCCChhHHHHHHHHHHHh
Q 044579 208 VGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 208 v~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
|.|+|++|+||||+|+.+++.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999874
No 171
>PRK08116 hypothetical protein; Validated
Probab=97.30 E-value=0.0011 Score=72.10 Aligned_cols=103 Identities=20% Similarity=0.271 Sum_probs=56.8
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHHHHHHhhhCCCCccccccchHHHHHhhcCC
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRV 285 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k 285 (1103)
..+.++|.+|+|||.||.++++.+..+...++|+. + ..+...+........ ......+.+.+.+-
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~-~---------~~ll~~i~~~~~~~~-----~~~~~~~~~~l~~~ 179 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN-F---------PQLLNRIKSTYKSSG-----KEDENEIIRSLVNA 179 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-H---------HHHHHHHHHHHhccc-----cccHHHHHHHhcCC
Confidence 45889999999999999999998876644455554 1 222233322221110 01112344445544
Q ss_pred ceEEEEeCCCC-CHhH--HHHHhCCCCc-cCCCcEEEEEeCch
Q 044579 286 KVLIVLDDVND-EFTQ--LESLAGGVDR-FSPGSRIVITTRDK 324 (1103)
Q Consensus 286 ~~LlVLDdv~~-~~~~--l~~l~~~~~~-~~~gs~IIiTTR~~ 324 (1103)
. ||||||+.. .... .+.+...++. ...|..+||||...
T Consensus 180 d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 180 D-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred C-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 4 899999931 1111 1222222221 23566799999744
No 172
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.27 E-value=0.0021 Score=76.97 Aligned_cols=173 Identities=17% Similarity=0.204 Sum_probs=92.0
Q ss_pred CCCccccchhHHHHHHhhc---c-------cCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccC
Q 044579 181 LDGLVGLNTRIEEMKSLLC---L-------ESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMG 250 (1103)
Q Consensus 181 ~~~~vGr~~~~~~l~~~L~---~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 250 (1103)
.++++|.+...+++.+++. . +....+-+.++|++|.|||++|++++......| +. + +
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~-----~~-i---~---- 120 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF-----FS-I---S---- 120 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCe-----ee-c---c----
Confidence 4567888777666655443 0 122245688999999999999999998653332 11 0 0
Q ss_pred hHHHHHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCCCH----------------hHHHHHhCCCCcc--C
Q 044579 251 VIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVNDEF----------------TQLESLAGGVDRF--S 312 (1103)
Q Consensus 251 ~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~----------------~~l~~l~~~~~~~--~ 312 (1103)
... +.....+.. .......+.......+.+|++|+++ .. ..+..+...++.+ .
T Consensus 121 ~~~----~~~~~~g~~----~~~l~~~f~~a~~~~p~Il~iDEid-~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~ 191 (495)
T TIGR01241 121 GSD----FVEMFVGVG----ASRVRDLFEQAKKNAPCIIFIDEID-AVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN 191 (495)
T ss_pred HHH----HHHHHhccc----HHHHHHHHHHHHhcCCCEEEEechh-hhhhccccCcCCccHHHHHHHHHHHhhhccccCC
Confidence 000 111111100 0001112333334567899999996 21 0122233222222 2
Q ss_pred CCcEEEEEeCchhh-----HhhcCcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCC
Q 044579 313 PGSRIVITTRDKQV-----LDKCGVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGN 378 (1103)
Q Consensus 313 ~gs~IIiTTR~~~v-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~ 378 (1103)
.+..||.||..... ......+..++++..+.++-.++|..+.-....... .....+++.+.|.
T Consensus 192 ~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~---~~l~~la~~t~G~ 259 (495)
T TIGR01241 192 TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPD---VDLKAVARRTPGF 259 (495)
T ss_pred CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcc---hhHHHHHHhCCCC
Confidence 34456666654432 211245678899999999999999877633222111 1234667777663
No 173
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.23 E-value=0.00013 Score=54.70 Aligned_cols=34 Identities=21% Similarity=0.343 Sum_probs=19.9
Q ss_pred cccccccccccccccccccccCCcceEecCCCCC
Q 044579 597 NLIELRLPYSKVEQIWEGKKEASKLKSIDLCHSQ 630 (1103)
Q Consensus 597 ~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~ 630 (1103)
+|++|++++|+|+.+|..+.+|++|+.|++++|+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 4566666666666665556666666666666665
No 174
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.22 E-value=0.013 Score=60.91 Aligned_cols=197 Identities=14% Similarity=0.129 Sum_probs=105.6
Q ss_pred ccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHHHHHHhhh
Q 044579 184 LVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRDEVISQVL 263 (1103)
Q Consensus 184 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~ 263 (1103)
+++..++-+.+..+-..-+.+-+++.++|.-|.|||.++|++...+.+.=-..+.+. ....+...+...+...+.
T Consensus 30 ~~~~a~h~e~l~~l~~~i~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~-----~~~~s~~~~~~ai~~~l~ 104 (269)
T COG3267 30 DYWAADHNEALLMLHAAIADGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVID-----KPTLSDATLLEAIVADLE 104 (269)
T ss_pred hhhhhhhhHHHHHHHHHHhcCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEec-----CcchhHHHHHHHHHHHhc
Confidence 344444444444333223445569999999999999999966654432222222222 223344555666666665
Q ss_pred CCCCcccccc-chHHHHHh----h-cCCc-eEEEEeCCCC-CHhHHHHH---hCCCCccCCCcEEEEEeCch-------h
Q 044579 264 GENLKIGTLI-VPQNIKKR----L-QRVK-VLIVLDDVND-EFTQLESL---AGGVDRFSPGSRIVITTRDK-------Q 325 (1103)
Q Consensus 264 ~~~~~~~~~~-~~~~l~~~----L-~~k~-~LlVLDdv~~-~~~~l~~l---~~~~~~~~~gs~IIiTTR~~-------~ 325 (1103)
... ..... ....+.+. . ++++ +.+++|+... ..+.++.+ ...-......-+|+..-..+ .
T Consensus 105 ~~p--~~~~~~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~ 182 (269)
T COG3267 105 SQP--KVNVNAVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLP 182 (269)
T ss_pred cCc--cchhHHHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchH
Confidence 522 11111 11122222 2 5667 9999999852 22333333 22211111112233332211 1
Q ss_pred hHhhc--CcceEEEccCCChhHHHHHHHHhhhccCCCCh-hHHHHHHHHHHHhCCChhHHHHHHh
Q 044579 326 VLDKC--GVSYIYKVKRLEHDNALELFCRKAIRQNSRSQ-DLLELSKEIVGYAKGNPLALEVLGS 387 (1103)
Q Consensus 326 v~~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~-~~~~~~~~i~~~~~G~PLal~~lg~ 387 (1103)
+.... .+.-.|++.+++.++...++..+.-+...+.+ -..+....|.....|.|.++..++.
T Consensus 183 ~l~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 183 VLRELEQRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHhhhheEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 11111 22223999999999999998887644322222 2345677888899999999987764
No 175
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=97.17 E-value=0.00046 Score=68.28 Aligned_cols=65 Identities=25% Similarity=0.423 Sum_probs=56.9
Q ss_pred cEEEcCccccccC-chHHHHHHHHHhC-CCeEEeeCccccC--CCcchHHHHHHHhhcceEEEEecCCc
Q 044579 11 EVFLSFRGEDTRN-GFTSHLAAALHRK-QIQFFIDDEELKK--GDEISPALSNAIESSDISIIIFSKGY 75 (1103)
Q Consensus 11 dvfis~~~~d~~~-~~~~~l~~~L~~~-g~~~~~d~~~~~~--g~~~~~~~~~~i~~s~~~i~v~S~~y 75 (1103)
-|||||+..+..+ .+|..|++.|++. |+.|.+|.++... +..+...+.++++++...|+|.|+.|
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~ 70 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY 70 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence 4999998865543 6899999999999 9999999988854 77899999999999999999999654
No 176
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.17 E-value=0.0069 Score=65.23 Aligned_cols=199 Identities=14% Similarity=0.139 Sum_probs=109.1
Q ss_pred CCccccchh---HHHHHHhhccc-CCCeEEEEEeecCCChhHHHHHHHHHHHhccCCc------eEEEEechhhhcccCh
Q 044579 182 DGLVGLNTR---IEEMKSLLCLE-SHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQG------KCFMANVREKANKMGV 251 (1103)
Q Consensus 182 ~~~vGr~~~---~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~------~~~~~~~~~~~~~~~~ 251 (1103)
+.+||-..- ++.|++++... ....+-+.|+|.+|+|||++++++.+.+...++. ++.+. .....+.
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq----~P~~p~~ 109 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQ----MPPEPDE 109 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEe----cCCCCCh
Confidence 344554333 45566666533 3345679999999999999999999876544432 22332 3456678
Q ss_pred HHHHHHHHHhhhCCCCccccccchH-HHHHhhcC-CceEEEEeCCCC----CHhHHHHHhCCCCcc---CCCcEEEEEeC
Q 044579 252 IHVRDEVISQVLGENLKIGTLIVPQ-NIKKRLQR-VKVLIVLDDVND----EFTQLESLAGGVDRF---SPGSRIVITTR 322 (1103)
Q Consensus 252 ~~~~~~ll~~l~~~~~~~~~~~~~~-~l~~~L~~-k~~LlVLDdv~~----~~~~l~~l~~~~~~~---~~gs~IIiTTR 322 (1103)
..+...++..+.............. .+.+.++. +-=+||+|.+.+ ...+-..+...+... -.=+-|.+-|+
T Consensus 110 ~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 110 RRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 8899999999875543333322222 34444443 344889999963 111122222111111 22345666666
Q ss_pred chhhHhhc-----CcceEEEccCCChh-HHHHHHHHhhh----ccCCCChhHHHHHHHHHHHhCCChhHHHHH
Q 044579 323 DKQVLDKC-----GVSYIYKVKRLEHD-NALELFCRKAI----RQNSRSQDLLELSKEIVGYAKGNPLALEVL 385 (1103)
Q Consensus 323 ~~~v~~~~-----~~~~~~~l~~L~~~-ea~~Lf~~~a~----~~~~~~~~~~~~~~~i~~~~~G~PLal~~l 385 (1103)
+---+-.. .....+.++....+ |..+|+..... +.... -...++++.|...++|+.--+..+
T Consensus 190 ~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~-l~~~~la~~i~~~s~G~iG~l~~l 261 (302)
T PF05621_consen 190 EAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSN-LASPELARRIHERSEGLIGELSRL 261 (302)
T ss_pred HHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHHHHcCCchHHHHHH
Confidence 43211110 11235566666644 44555533221 12222 234678999999999987554433
No 177
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.15 E-value=0.0023 Score=79.14 Aligned_cols=65 Identities=23% Similarity=0.357 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhcccCCCCCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHh
Q 044579 160 LVEKIVEDISKKLEDMSESTDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 160 ~i~~iv~~i~~~l~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
.+++...++...-. ....+.++||+.+++++.+.|.... ..-+.++|.+|+|||++|+.++.++.
T Consensus 168 ~l~~~~~~l~~~a~----~g~~~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~i~ 232 (758)
T PRK11034 168 RMENFTTNLNQLAR----VGGIDPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_pred HHHHHHHhHHHHHH----cCCCCcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 44554444443322 2234569999999999999887532 23456899999999999999998753
No 178
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.10 E-value=0.00015 Score=88.61 Aligned_cols=109 Identities=26% Similarity=0.265 Sum_probs=47.2
Q ss_pred CCCCCEEecCCCcccc-cccccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcccCCCC
Q 044579 732 LTNLKELYLSRCSTLN-RLSTSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLS 810 (1103)
Q Consensus 732 l~~L~~L~L~~~~~~~-~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~ 810 (1103)
||+|++|.+++-.+.. ....-..++++|..||+|++. +..+ ..+++|++|+.|.+.+-.+.. -.....+.+|+
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn----I~nl-~GIS~LknLq~L~mrnLe~e~-~~~l~~LF~L~ 220 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN----ISNL-SGISRLKNLQVLSMRNLEFES-YQDLIDLFNLK 220 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCC----ccCc-HHHhccccHHHHhccCCCCCc-hhhHHHHhccc
Confidence 4555555555432211 112223345555555555532 1112 344555555555554433221 11122334455
Q ss_pred CCCEEeCCCCCccccC-------ccccCCCCCCEEeccCCcCC
Q 044579 811 SLQWLDLSGNNFESLP-------SSIKQLSQLRKLDLSNCNML 846 (1103)
Q Consensus 811 ~L~~L~Ls~n~l~~lp-------~~i~~l~~L~~L~L~~n~~l 846 (1103)
+|+.||+|......-+ +.-..||+|+.||.|+..+.
T Consensus 221 ~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 221 KLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred CCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 6666666554332221 11233566666666655443
No 179
>PRK12377 putative replication protein; Provisional
Probab=97.08 E-value=0.0052 Score=65.57 Aligned_cols=36 Identities=14% Similarity=0.141 Sum_probs=29.8
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEE
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMA 240 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 240 (1103)
...+.++|.+|+|||+||.++++.+..+...+.|+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 357899999999999999999998876655566664
No 180
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.05 E-value=0.0046 Score=72.60 Aligned_cols=155 Identities=15% Similarity=0.196 Sum_probs=83.4
Q ss_pred CCCccccchhHHHHHHhhc--------ccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChH
Q 044579 181 LDGLVGLNTRIEEMKSLLC--------LESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVI 252 (1103)
Q Consensus 181 ~~~~vGr~~~~~~l~~~L~--------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~ 252 (1103)
..++.|.+...+.+.+... .+-...+-|.++|++|.|||.+|++++..+...| +..+...
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~----~~l~~~~-------- 294 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPL----LRLDVGK-------- 294 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEEEhHH--------
Confidence 3567787766655544211 1123356789999999999999999998764332 1111111
Q ss_pred HHHHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCCCHh-------------HHHHHhCCCCccCCCcEEEE
Q 044579 253 HVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVNDEFT-------------QLESLAGGVDRFSPGSRIVI 319 (1103)
Q Consensus 253 ~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~-------------~l~~l~~~~~~~~~gs~IIi 319 (1103)
+.....++. .....+.++..-...+++|++|+++.-.. .+..+...+.....+.-||.
T Consensus 295 -----l~~~~vGes----e~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIa 365 (489)
T CHL00195 295 -----LFGGIVGES----ESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVA 365 (489)
T ss_pred -----hcccccChH----HHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEE
Confidence 111111100 00001122222235689999999962100 01111111111223445666
Q ss_pred EeCchhh-----HhhcCcceEEEccCCChhHHHHHHHHhhhc
Q 044579 320 TTRDKQV-----LDKCGVSYIYKVKRLEHDNALELFCRKAIR 356 (1103)
Q Consensus 320 TTR~~~v-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 356 (1103)
||..... ......+..+.++..+.++-.++|..+..+
T Consensus 366 TTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 366 TANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred ecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 7765432 222245678899999999999999887744
No 181
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.05 E-value=0.0049 Score=69.64 Aligned_cols=134 Identities=13% Similarity=0.198 Sum_probs=80.8
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHHHHHHhhhCCCCccccccchHHHHHhhcC
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQR 284 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~ 284 (1103)
...+.|||..|.|||.|++++.+......+....+.. .......++...+... .....++..
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~--------~se~f~~~~v~a~~~~--------~~~~Fk~~y-- 174 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYL--------TSEDFTNDFVKALRDN--------EMEKFKEKY-- 174 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEec--------cHHHHHHHHHHHHHhh--------hHHHHHHhh--
Confidence 5679999999999999999999988777663322221 1122223333333221 112455544
Q ss_pred CceEEEEeCCCC--CHhH-HHHHhCCCCc-cCCCcEEEEEeCch---------hhHhhcCcceEEEccCCChhHHHHHHH
Q 044579 285 VKVLIVLDDVND--EFTQ-LESLAGGVDR-FSPGSRIVITTRDK---------QVLDKCGVSYIYKVKRLEHDNALELFC 351 (1103)
Q Consensus 285 k~~LlVLDdv~~--~~~~-l~~l~~~~~~-~~~gs~IIiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~ 351 (1103)
.-=++++||++. ..+. .+.+...++. ...|-.||+|++.. .+...+...-++++.+++.+.....+.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~ 254 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILR 254 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHH
Confidence 334888999952 1111 2222222221 13455899999643 223334556789999999999999999
Q ss_pred Hhhhc
Q 044579 352 RKAIR 356 (1103)
Q Consensus 352 ~~a~~ 356 (1103)
+.+-.
T Consensus 255 kka~~ 259 (408)
T COG0593 255 KKAED 259 (408)
T ss_pred HHHHh
Confidence 87743
No 182
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.04 E-value=0.0077 Score=72.65 Aligned_cols=53 Identities=25% Similarity=0.320 Sum_probs=43.3
Q ss_pred CCCCCCCccccchhHHHHHHhhcccC---CCeEEEEEeecCCChhHHHHHHHHHHH
Q 044579 177 ESTDLDGLVGLNTRIEEMKSLLCLES---HDVRIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 177 ~~~~~~~~vGr~~~~~~l~~~L~~~~---~~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
.|...++++|-++.++++..++.... ...++++|+|++|+||||+++.++..+
T Consensus 79 rP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 79 KPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45566789999999999998887432 334689999999999999999999764
No 183
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.04 E-value=0.0029 Score=68.85 Aligned_cols=165 Identities=15% Similarity=0.217 Sum_probs=97.2
Q ss_pred CCCccccchhHHHHHHhhcccCCC-eEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHHHHH
Q 044579 181 LDGLVGLNTRIEEMKSLLCLESHD-VRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRDEVI 259 (1103)
Q Consensus 181 ~~~~vGr~~~~~~l~~~L~~~~~~-~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ll 259 (1103)
.+.+-+|+.++..+..++...+.. ...|.|+|-+|.|||.+.+++++.... ..+|+..+ +.+....+...++
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~---~~vw~n~~----ecft~~~lle~IL 77 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL---ENVWLNCV----ECFTYAILLEKIL 77 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC---cceeeehH----HhccHHHHHHHHH
Confidence 467889999999999999865553 455699999999999999999987632 35687733 3456667777777
Q ss_pred Hhhh-CCCCcccccc---c-hH---HHHH--hh--cCCceEEEEeCCCCCHhH-----HHHHhCCCCccCCCcEEEEEeC
Q 044579 260 SQVL-GENLKIGTLI---V-PQ---NIKK--RL--QRVKVLIVLDDVNDEFTQ-----LESLAGGVDRFSPGSRIVITTR 322 (1103)
Q Consensus 260 ~~l~-~~~~~~~~~~---~-~~---~l~~--~L--~~k~~LlVLDdv~~~~~~-----l~~l~~~~~~~~~gs~IIiTTR 322 (1103)
.+.. ...+...... . .. .+.+ .. +++.++||||+++ ...+ +..+.....-......+|+++-
T Consensus 78 ~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad-~lrD~~a~ll~~l~~L~el~~~~~i~iils~ 156 (438)
T KOG2543|consen 78 NKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNAD-ALRDMDAILLQCLFRLYELLNEPTIVIILSA 156 (438)
T ss_pred HHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHH-hhhccchHHHHHHHHHHHHhCCCceEEEEec
Confidence 7774 2221111100 0 00 2222 12 2468999999997 3322 1111111000112234455544
Q ss_pred chhh---HhhcCc--ceEEEccCCChhHHHHHHHHh
Q 044579 323 DKQV---LDKCGV--SYIYKVKRLEHDNALELFCRK 353 (1103)
Q Consensus 323 ~~~v---~~~~~~--~~~~~l~~L~~~ea~~Lf~~~ 353 (1103)
.... ...++. ..++..+..+.+|..+++.+.
T Consensus 157 ~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 157 PSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred cccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 3321 111222 245667888999999988653
No 184
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.01 E-value=5.2e-05 Score=77.80 Aligned_cols=145 Identities=17% Similarity=0.162 Sum_probs=78.2
Q ss_pred cccccCCcceEecCCCCCCCccCCC-----CCCCCCccEEEecCCCCCCcccccccCCCcccEEEccCCCCCcccCCCCC
Q 044579 613 EGKKEASKLKSIDLCHSQHLIRMPD-----LSEIPNLERTNFFNCTNLVLVPSSIQNFNNLSMLCFRGCESLRSFPRDIH 687 (1103)
Q Consensus 613 ~~~~~l~~L~~L~L~~~~~~~~~p~-----l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~ 687 (1103)
+.+-.+++|+..+||+|.+....|. ++..++|++|.+++|..-..-..-|++ .|.+ |..|++.. +
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~~--la~nKKaa------~ 155 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALFH--LAYNKKAA------D 155 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHHH--HHHHhhhc------c
Confidence 4456788999999999987766664 677888999998887432111111110 0111 11111111 1
Q ss_pred CCCCcEEEccCCcCCCcCCC--------cCCCccEEecCCccceec------CccccCCCCCCEEecCCCcccc----cc
Q 044579 688 FVSPVTIDFSFCVNLTEFPK--------ISGKITELNLCDTAIEEV------PSSVECLTNLKELYLSRCSTLN----RL 749 (1103)
Q Consensus 688 l~~L~~L~l~~c~~l~~~~~--------~~~~L~~L~L~~~~i~~l------p~~~~~l~~L~~L~L~~~~~~~----~l 749 (1103)
-+.|++..... +.+...+. .-.+|+.+.+..|.|+.= -..+..+.+|+.|+|.+|.++. .+
T Consensus 156 kp~Le~vicgr-NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~L 234 (388)
T COG5238 156 KPKLEVVICGR-NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYL 234 (388)
T ss_pred CCCceEEEecc-chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHH
Confidence 22233333322 22333321 224677777777777621 1124567788888888876542 22
Q ss_pred cccccCCCCCcEEeecCCC
Q 044579 750 STSICKLKSLHELILSDCL 768 (1103)
Q Consensus 750 p~~l~~l~~L~~L~L~~~~ 768 (1103)
...++..+.|++|.+.+|-
T Consensus 235 a~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 235 ADALCEWNLLRELRLNDCL 253 (388)
T ss_pred HHHhcccchhhhccccchh
Confidence 3344555667777777664
No 185
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.98 E-value=0.0017 Score=63.10 Aligned_cols=34 Identities=26% Similarity=0.385 Sum_probs=26.9
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHhccCCceEEE
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFM 239 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 239 (1103)
+.+.|+|.+|+||||+|+.++..+.......+++
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~ 36 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYI 36 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEE
Confidence 4789999999999999999998776654334444
No 186
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.97 E-value=0.00018 Score=87.80 Aligned_cols=80 Identities=19% Similarity=0.163 Sum_probs=42.7
Q ss_pred CCCCCcEEEccCCc----CCCcCCCcCCCccEEecCCccceecCccccCCCCCCEEecCCCcccc-cccccccCCCCCcE
Q 044579 687 HFVSPVTIDFSFCV----NLTEFPKISGKITELNLCDTAIEEVPSSVECLTNLKELYLSRCSTLN-RLSTSICKLKSLHE 761 (1103)
Q Consensus 687 ~l~~L~~L~l~~c~----~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~-~lp~~l~~l~~L~~ 761 (1103)
.+|+|+.|.+++-. ....+-..++||..||+++++++.+ ..+++|++|+.|.+.+-.+.. ..-..+.+|++|+.
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 34555555554421 1122333455666677777666666 556667777777666543332 11123455666666
Q ss_pred EeecCC
Q 044579 762 LILSDC 767 (1103)
Q Consensus 762 L~L~~~ 767 (1103)
||+|.-
T Consensus 225 LDIS~~ 230 (699)
T KOG3665|consen 225 LDISRD 230 (699)
T ss_pred eecccc
Confidence 666653
No 187
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.97 E-value=0.0046 Score=77.83 Aligned_cols=175 Identities=17% Similarity=0.181 Sum_probs=90.4
Q ss_pred CCCccccchhHHHHHHhhcc-----------cCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhccc
Q 044579 181 LDGLVGLNTRIEEMKSLLCL-----------ESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKM 249 (1103)
Q Consensus 181 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 249 (1103)
.+++.|.+..++++.+.+.. +-...+.+.++|.+|+|||+||+++++.....| +.+. ..+.
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~---i~i~-~~~i---- 248 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF---ISIN-GPEI---- 248 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE---EEEe-cHHH----
Confidence 35578999888888776531 112345788999999999999999998764433 1221 1111
Q ss_pred ChHHHHHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCCC------------HhHHHHHhCCCCcc-CCCcE
Q 044579 250 GVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVNDE------------FTQLESLAGGVDRF-SPGSR 316 (1103)
Q Consensus 250 ~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~------------~~~l~~l~~~~~~~-~~gs~ 316 (1103)
.....+. ........+.......+.+|++|+++.- ......+...+... ..+..
T Consensus 249 ---------~~~~~g~----~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~v 315 (733)
T TIGR01243 249 ---------MSKYYGE----SEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRV 315 (733)
T ss_pred ---------hcccccH----HHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCE
Confidence 0000000 0000001222233456789999998520 01122232222211 23334
Q ss_pred EEE-EeCchhhH-hh----cCcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCCh
Q 044579 317 IVI-TTRDKQVL-DK----CGVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNP 379 (1103)
Q Consensus 317 IIi-TTR~~~v~-~~----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 379 (1103)
+|| ||....-. .. ...+..+.+...+.++..+++..+.-...... ......+++.+.|.-
T Consensus 316 ivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~---d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 316 IVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAE---DVDLDKLAEVTHGFV 381 (733)
T ss_pred EEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcc---ccCHHHHHHhCCCCC
Confidence 444 55433211 11 12346778888888888888875542211111 112355666666654
No 188
>PRK06921 hypothetical protein; Provisional
Probab=96.91 E-value=0.002 Score=69.99 Aligned_cols=36 Identities=17% Similarity=0.274 Sum_probs=29.4
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhcc-CCceEEEE
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISRH-FQGKCFMA 240 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~ 240 (1103)
...+.++|..|+|||+||.++++.+..+ ...++|+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 4578999999999999999999987665 44556665
No 189
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.90 E-value=0.017 Score=63.98 Aligned_cols=95 Identities=13% Similarity=0.154 Sum_probs=63.7
Q ss_pred CCceEEEEeCCCC-CHhHHHHHhCCCCccCCCcEEEEEeCch-hhHhhc-CcceEEEccCCChhHHHHHHHHhhhccCCC
Q 044579 284 RVKVLIVLDDVND-EFTQLESLAGGVDRFSPGSRIVITTRDK-QVLDKC-GVSYIYKVKRLEHDNALELFCRKAIRQNSR 360 (1103)
Q Consensus 284 ~k~~LlVLDdv~~-~~~~l~~l~~~~~~~~~gs~IIiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 360 (1103)
+++=++|+|+++. +.....+|+..+....+++.+|++|... .++... .....+.+.+++.+++.+.+.... .+
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~----~~ 187 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG----VS 187 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC----CC
Confidence 4456889999973 2344566666666666788777777654 344333 335678999999999998886531 11
Q ss_pred ChhHHHHHHHHHHHhCCChhHHHHHH
Q 044579 361 SQDLLELSKEIVGYAKGNPLALEVLG 386 (1103)
Q Consensus 361 ~~~~~~~~~~i~~~~~G~PLal~~lg 386 (1103)
.+.+..++..++|.|+....+.
T Consensus 188 ----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 188 ----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred ----hHHHHHHHHHcCCCHHHHHHHh
Confidence 1235678999999998765544
No 190
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.90 E-value=0.0083 Score=75.49 Aligned_cols=172 Identities=18% Similarity=0.254 Sum_probs=93.5
Q ss_pred CCccccchhHHHHHHhhcc-----------cCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccC
Q 044579 182 DGLVGLNTRIEEMKSLLCL-----------ESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMG 250 (1103)
Q Consensus 182 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 250 (1103)
.++.|.+...++|.+.+.. +-...+-+.++|++|.|||++|+++++.....|- .+. .
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi---~v~-~-------- 520 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFI---AVR-G-------- 520 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEE---EEe-h--------
Confidence 5577888777777665531 1123456889999999999999999997654431 111 0
Q ss_pred hHHHHHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCCCH--------------hHHHHHhCCCCcc--CCC
Q 044579 251 VIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVNDEF--------------TQLESLAGGVDRF--SPG 314 (1103)
Q Consensus 251 ~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~--------------~~l~~l~~~~~~~--~~g 314 (1103)
.+++....++. .......+...-+..+.+|++|+++ .. .....+...++.. ..+
T Consensus 521 -----~~l~~~~vGes----e~~i~~~f~~A~~~~p~iifiDEid-~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~ 590 (733)
T TIGR01243 521 -----PEILSKWVGES----EKAIREIFRKARQAAPAIIFFDEID-AIAPARGARFDTSVTDRIVNQLLTEMDGIQELSN 590 (733)
T ss_pred -----HHHhhcccCcH----HHHHHHHHHHHHhcCCEEEEEEChh-hhhccCCCCCCccHHHHHHHHHHHHhhcccCCCC
Confidence 01122111111 0000112222224567899999986 21 1122233333221 234
Q ss_pred cEEEEEeCchhhHhh-----cCcceEEEccCCChhHHHHHHHHhhhccCCC-ChhHHHHHHHHHHHhCCCh
Q 044579 315 SRIVITTRDKQVLDK-----CGVSYIYKVKRLEHDNALELFCRKAIRQNSR-SQDLLELSKEIVGYAKGNP 379 (1103)
Q Consensus 315 s~IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~G~P 379 (1103)
..||.||...+.+.. -..+..+.++..+.++-.++|..+.-+.... ..+ ...+++.+.|.-
T Consensus 591 v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 591 VVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred EEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCCC
Confidence 456667765543321 1356788999999999999997665332211 112 244555666543
No 191
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.88 E-value=0.01 Score=68.44 Aligned_cols=148 Identities=18% Similarity=0.189 Sum_probs=83.8
Q ss_pred EEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHHHHHHhhhCCCCccccccchHHHHHhhcCCc
Q 044579 207 IVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVK 286 (1103)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~ 286 (1103)
++.|.|+-++||||+++.+.....+. .+++...........+ .+.+.... .+. ..++
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~~~l----~d~~~~~~-------------~~~---~~~~ 95 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDRIEL----LDLLRAYI-------------ELK---EREK 95 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcchhhH----HHHHHHHH-------------Hhh---ccCC
Confidence 99999999999999997666655444 4444421111111111 11111111 111 1178
Q ss_pred eEEEEeCCCCCHhHHHHHhCCCCccCCCcEEEEEeCchhhHhh------cCcceEEEccCCChhHHHHHHHHhhhccCCC
Q 044579 287 VLIVLDDVNDEFTQLESLAGGVDRFSPGSRIVITTRDKQVLDK------CGVSYIYKVKRLEHDNALELFCRKAIRQNSR 360 (1103)
Q Consensus 287 ~LlVLDdv~~~~~~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 360 (1103)
..++||.|. ....|+.....+-..++. +|+||+-....... .|....+++.+|+..|-..+-...+.
T Consensus 96 ~yifLDEIq-~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~~~~~----- 168 (398)
T COG1373 96 SYIFLDEIQ-NVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKGEEIE----- 168 (398)
T ss_pred ceEEEeccc-CchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhcccccc-----
Confidence 899999998 666666655554444455 88888876654322 14457889999999988765431010
Q ss_pred ChhHHHHHHHHHHHhCCChhHHHHH
Q 044579 361 SQDLLELSKEIVGYAKGNPLALEVL 385 (1103)
Q Consensus 361 ~~~~~~~~~~i~~~~~G~PLal~~l 385 (1103)
...... .-+-.-..||.|-++..-
T Consensus 169 ~~~~~~-~f~~Yl~~GGfP~~v~~~ 192 (398)
T COG1373 169 PSKLEL-LFEKYLETGGFPESVKAD 192 (398)
T ss_pred hhHHHH-HHHHHHHhCCCcHHHhCc
Confidence 001111 122223468999886543
No 192
>PRK08181 transposase; Validated
Probab=96.86 E-value=0.0015 Score=70.67 Aligned_cols=35 Identities=17% Similarity=0.141 Sum_probs=28.4
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHhccCCceEEEE
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMA 240 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 240 (1103)
..+.++|.+|+|||.||.++++....+...+.|+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~ 141 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR 141 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee
Confidence 45899999999999999999998766554556654
No 193
>PRK10536 hypothetical protein; Provisional
Probab=96.85 E-value=0.0041 Score=65.62 Aligned_cols=138 Identities=11% Similarity=0.131 Sum_probs=75.2
Q ss_pred CCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHH-H-hccCCceEEEEechhhhc-----ccChHH
Q 044579 181 LDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQ-I-SRHFQGKCFMANVREKAN-----KMGVIH 253 (1103)
Q Consensus 181 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~-~-~~~F~~~~~~~~~~~~~~-----~~~~~~ 253 (1103)
...+.++......+..++.. ..+|.+.|.+|.|||+||.+++.+ + ...|+..+.....-+..+ +.++.+
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~e 129 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAE 129 (262)
T ss_pred CccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHH
Confidence 35567788888887777753 248999999999999999999884 3 445554443321111111 111211
Q ss_pred HHH-------HHHHhhhCCCC-c-cccccch--H-HHHHhhcCCc---eEEEEeCCCC-CHhHHHHHhCCCCccCCCcEE
Q 044579 254 VRD-------EVISQVLGENL-K-IGTLIVP--Q-NIKKRLQRVK---VLIVLDDVND-EFTQLESLAGGVDRFSPGSRI 317 (1103)
Q Consensus 254 ~~~-------~ll~~l~~~~~-~-~~~~~~~--~-~l~~~L~~k~---~LlVLDdv~~-~~~~l~~l~~~~~~~~~gs~I 317 (1103)
... +.+..+.+... . ....+.+ . .--..++++. -+||+|.+.+ +..+...+... .+.+|++
T Consensus 130 K~~p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR---~g~~sk~ 206 (262)
T PRK10536 130 KFAPYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTR---LGENVTV 206 (262)
T ss_pred HHHHHHHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhh---cCCCCEE
Confidence 111 11222221100 0 0000000 0 1223455554 4999999963 34556665544 5799999
Q ss_pred EEEeCchh
Q 044579 318 VITTRDKQ 325 (1103)
Q Consensus 318 IiTTR~~~ 325 (1103)
|+|--..+
T Consensus 207 v~~GD~~Q 214 (262)
T PRK10536 207 IVNGDITQ 214 (262)
T ss_pred EEeCChhh
Confidence 99876543
No 194
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.85 E-value=0.0018 Score=73.70 Aligned_cols=55 Identities=22% Similarity=0.220 Sum_probs=41.7
Q ss_pred CCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhc--cCCceEEEE
Q 044579 182 DGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISR--HFQGKCFMA 240 (1103)
Q Consensus 182 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~F~~~~~~~ 240 (1103)
.++++.+..++.+...+..+ +.+.++|++|+|||++|+++++.+.. .+..+.|+.
T Consensus 175 ~d~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~Vt 231 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQ 231 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEe
Confidence 45777888888888877633 46888999999999999999987643 344455554
No 195
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.85 E-value=0.012 Score=73.82 Aligned_cols=49 Identities=20% Similarity=0.273 Sum_probs=38.0
Q ss_pred CCccccchhHHHHHHhhccc------C-CCeEEEEEeecCCChhHHHHHHHHHHHh
Q 044579 182 DGLVGLNTRIEEMKSLLCLE------S-HDVRIVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 182 ~~~vGr~~~~~~l~~~L~~~------~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
..++|.+..++.+...+... + ....++.++|+.|+|||+||+.++..+.
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~ 509 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG 509 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc
Confidence 56789998888887776521 1 1234688999999999999999998763
No 196
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.81 E-value=0.015 Score=64.15 Aligned_cols=31 Identities=32% Similarity=0.542 Sum_probs=26.5
Q ss_pred CCeEEEEEeecCCChhHHHHHHHHHHHhccC
Q 044579 203 HDVRIVGIWGMGGIGKTTIASVVFHQISRHF 233 (1103)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 233 (1103)
...+.++|||++|.|||.+|++++.++...|
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~ 176 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEP 176 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCe
Confidence 3468999999999999999999999875543
No 197
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.80 E-value=0.0095 Score=60.26 Aligned_cols=52 Identities=21% Similarity=0.263 Sum_probs=41.9
Q ss_pred CCCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHh
Q 044579 177 ESTDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 177 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
.|....++||-++-++.+.-... +++..-+.|.||+|+||||-+..+++.+-
T Consensus 22 rP~~l~dIVGNe~tv~rl~via~--~gnmP~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 22 RPSVLQDIVGNEDTVERLSVIAK--EGNMPNLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred CchHHHHhhCCHHHHHHHHHHHH--cCCCCceEeeCCCCCchhhHHHHHHHHHh
Confidence 34455678999999988876654 45677899999999999999999998753
No 198
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.80 E-value=0.0016 Score=65.98 Aligned_cols=36 Identities=22% Similarity=0.281 Sum_probs=26.6
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEE
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMA 240 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 240 (1103)
..-+.++|..|+|||.||.++++....+-..+.|+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 356999999999999999999987655444456664
No 199
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.78 E-value=0.017 Score=64.99 Aligned_cols=146 Identities=12% Similarity=0.136 Sum_probs=85.8
Q ss_pred Cccc-cchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhcc---------------------CCceEEEE
Q 044579 183 GLVG-LNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRH---------------------FQGKCFMA 240 (1103)
Q Consensus 183 ~~vG-r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~~~~~ 240 (1103)
.++| -+.-++.+...+..+ .-.+...++|+.|+||||+|+.+++.+-.. ++...++.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~ 84 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVA 84 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEec
Confidence 3566 455566677666422 234677899999999999999999875321 11111111
Q ss_pred echhhhcccChHHHHHHHHHhhhCCCCccccccchHHHHHh-----hcCCceEEEEeCCCC-CHhHHHHHhCCCCccCCC
Q 044579 241 NVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKR-----LQRVKVLIVLDDVND-EFTQLESLAGGVDRFSPG 314 (1103)
Q Consensus 241 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~-----L~~k~~LlVLDdv~~-~~~~l~~l~~~~~~~~~g 314 (1103)
.- .....+. ....+.+. ..+.+=++|+|+++. +....+.|...+....++
T Consensus 85 ~~---~~~i~id---------------------~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~ 140 (329)
T PRK08058 85 PD---GQSIKKD---------------------QIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGG 140 (329)
T ss_pred cc---cccCCHH---------------------HHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCC
Confidence 00 0000000 11111211 223455788999863 234466677777666678
Q ss_pred cEEEEEeCchh-hHhhc-CcceEEEccCCChhHHHHHHHHh
Q 044579 315 SRIVITTRDKQ-VLDKC-GVSYIYKVKRLEHDNALELFCRK 353 (1103)
Q Consensus 315 s~IIiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~ 353 (1103)
+.+|++|.+.. +.... .....+++.+++.++..+.+...
T Consensus 141 ~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 141 TTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred ceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 88887776543 33332 33568999999999998888653
No 200
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.77 E-value=0.073 Score=59.00 Aligned_cols=93 Identities=12% Similarity=0.169 Sum_probs=63.5
Q ss_pred CCceEEEEeCCCC-CHhHHHHHhCCCCccCCCcEEEEEeCch-hhHhhc-CcceEEEccCCChhHHHHHHHHhhhccCCC
Q 044579 284 RVKVLIVLDDVND-EFTQLESLAGGVDRFSPGSRIVITTRDK-QVLDKC-GVSYIYKVKRLEHDNALELFCRKAIRQNSR 360 (1103)
Q Consensus 284 ~k~~LlVLDdv~~-~~~~l~~l~~~~~~~~~gs~IIiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 360 (1103)
+++=++|+|+++. +.....+|...+....+++.+|++|.+. .++... .....+.+.+++.+++.+.+.... ..
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~----~~ 182 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG----IT 182 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC----Cc
Confidence 3345788899973 2345667777776667778777776654 444443 345688999999999999886532 11
Q ss_pred ChhHHHHHHHHHHHhCCChhHHHHHH
Q 044579 361 SQDLLELSKEIVGYAKGNPLALEVLG 386 (1103)
Q Consensus 361 ~~~~~~~~~~i~~~~~G~PLal~~lg 386 (1103)
.+..+++.++|.|+....+.
T Consensus 183 ------~~~~~l~l~~G~p~~A~~~~ 202 (319)
T PRK06090 183 ------VPAYALKLNMGSPLKTLAMM 202 (319)
T ss_pred ------hHHHHHHHcCCCHHHHHHHh
Confidence 13567889999998765553
No 201
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.77 E-value=0.0025 Score=63.31 Aligned_cols=56 Identities=20% Similarity=0.262 Sum_probs=28.1
Q ss_pred CccEEecCCccceecCccccCCCCCCEEecCCCcccccccccccCCCCCcEEeecCC
Q 044579 711 KITELNLCDTAIEEVPSSVECLTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDC 767 (1103)
Q Consensus 711 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~ 767 (1103)
+...++|++|.+..++. +..+++|.+|.|.+|.++..-|.--..+++|+.|.|.+|
T Consensus 43 ~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred ccceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence 34455555555554433 444555555555555554444433333444555555543
No 202
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.75 E-value=0.01 Score=63.22 Aligned_cols=36 Identities=14% Similarity=0.204 Sum_probs=29.0
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEE
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMA 240 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 240 (1103)
...+.++|.+|+|||+||.++++.+..+-..++++.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it 134 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT 134 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 457899999999999999999998766555555553
No 203
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.72 E-value=0.016 Score=73.57 Aligned_cols=50 Identities=16% Similarity=0.283 Sum_probs=38.4
Q ss_pred CCccccchhHHHHHHhhccc-------CCCeEEEEEeecCCChhHHHHHHHHHHHhc
Q 044579 182 DGLVGLNTRIEEMKSLLCLE-------SHDVRIVGIWGMGGIGKTTIASVVFHQISR 231 (1103)
Q Consensus 182 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (1103)
..++|.+.-++.+...+... .....++.++|+.|+|||++|+.+++....
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~ 624 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFD 624 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhc
Confidence 46889999988887776521 112347889999999999999999986643
No 204
>PRK08118 topology modulation protein; Reviewed
Probab=96.70 E-value=0.0042 Score=62.44 Aligned_cols=32 Identities=25% Similarity=0.431 Sum_probs=25.4
Q ss_pred EEEEeecCCChhHHHHHHHHHHHhc---cCCceEE
Q 044579 207 IVGIWGMGGIGKTTIASVVFHQISR---HFQGKCF 238 (1103)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~~---~F~~~~~ 238 (1103)
.|.|+|++|+||||||+.+++...- +|+...|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 5889999999999999999997543 3554544
No 205
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.70 E-value=0.05 Score=60.45 Aligned_cols=92 Identities=10% Similarity=0.142 Sum_probs=62.8
Q ss_pred CCceEEEEeCCCC-CHhHHHHHhCCCCccCCCcEEEEEeCch-hhHhhc-CcceEEEccCCChhHHHHHHHHhhhccCCC
Q 044579 284 RVKVLIVLDDVND-EFTQLESLAGGVDRFSPGSRIVITTRDK-QVLDKC-GVSYIYKVKRLEHDNALELFCRKAIRQNSR 360 (1103)
Q Consensus 284 ~k~~LlVLDdv~~-~~~~l~~l~~~~~~~~~gs~IIiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 360 (1103)
+++=++|+|+++. +.....+|+..+....+++.+|++|.+. .++... .....+.+.+++.+++.+.+..... ..
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~---~~ 182 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSS---AE 182 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhc---cC
Confidence 4456788999973 2345667777777667788888777765 444332 3357889999999999999877541 11
Q ss_pred ChhHHHHHHHHHHHhCCChhHH
Q 044579 361 SQDLLELSKEIVGYAKGNPLAL 382 (1103)
Q Consensus 361 ~~~~~~~~~~i~~~~~G~PLal 382 (1103)
...+..+++.++|.|+..
T Consensus 183 ----~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 183 ----ISEILTALRINYGRPLLA 200 (325)
T ss_pred ----hHHHHHHHHHcCCCHHHH
Confidence 123556788899999643
No 206
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.69 E-value=0.013 Score=60.42 Aligned_cols=172 Identities=15% Similarity=0.208 Sum_probs=94.8
Q ss_pred CCccccchhHHH---HHHhhcc----cCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHH
Q 044579 182 DGLVGLNTRIEE---MKSLLCL----ESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHV 254 (1103)
Q Consensus 182 ~~~vGr~~~~~~---l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~ 254 (1103)
++.||.+....+ |.+.|.. +.-..+-|..+|++|.|||.+|+++++..+-.|- -+.
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l---~vk-------------- 183 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLL---LVK-------------- 183 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceE---Eec--------------
Confidence 567887766544 3444442 2234788999999999999999999987543331 111
Q ss_pred HHHHHHhhhCCCCccccccchHHHH-HhhcCCceEEEEeCCCC-------------CHhHHHHHhCCCCcc--CCCcEEE
Q 044579 255 RDEVISQVLGENLKIGTLIVPQNIK-KRLQRVKVLIVLDDVND-------------EFTQLESLAGGVDRF--SPGSRIV 318 (1103)
Q Consensus 255 ~~~ll~~l~~~~~~~~~~~~~~~l~-~~L~~k~~LlVLDdv~~-------------~~~~l~~l~~~~~~~--~~gs~II 318 (1103)
..+++.+..++. .. ....+- +.-+.-++++.+|.++. -.+...+|+..++.. +.|...|
T Consensus 184 at~liGehVGdg----ar-~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtI 258 (368)
T COG1223 184 ATELIGEHVGDG----AR-RIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTI 258 (368)
T ss_pred hHHHHHHHhhhH----HH-HHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEE
Confidence 012222222211 00 000111 22234589999998862 112244455444432 3455566
Q ss_pred EEeCchhhHhhc---CcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCC
Q 044579 319 ITTRDKQVLDKC---GVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGN 378 (1103)
Q Consensus 319 iTTR~~~v~~~~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~ 378 (1103)
-.|....++... .....++..--+++|-.+++..++-.-..+.... .+.++++.+|.
T Consensus 259 aaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~---~~~~~~~t~g~ 318 (368)
T COG1223 259 AATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD---LRYLAAKTKGM 318 (368)
T ss_pred eecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC---HHHHHHHhCCC
Confidence 666656554321 3345677777889999999998884433332211 34455555554
No 207
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.67 E-value=0.12 Score=58.29 Aligned_cols=174 Identities=13% Similarity=0.127 Sum_probs=95.2
Q ss_pred CceEEEEeCCCC----------CHhHHHHHhCCCCccCCCcEEEEEeCchhhHh----hc--CcceEEEccCCChhHHHH
Q 044579 285 VKVLIVLDDVND----------EFTQLESLAGGVDRFSPGSRIVITTRDKQVLD----KC--GVSYIYKVKRLEHDNALE 348 (1103)
Q Consensus 285 k~~LlVLDdv~~----------~~~~l~~l~~~~~~~~~gs~IIiTTR~~~v~~----~~--~~~~~~~l~~L~~~ea~~ 348 (1103)
++-+||+||... ...+|.+.+.. .+=.+||++|-+..... .+ .+.+.+.+.-.+.+.|.+
T Consensus 148 ~~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~----~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~ 223 (431)
T PF10443_consen 148 RRPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ----NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQ 223 (431)
T ss_pred cCCEEEEcchhccCcccchHHHHHHHHHHHHHh----cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHH
Confidence 367999999842 11223333222 35568999998765433 22 345678889999999999
Q ss_pred HHHHhhhccCCC-------------C-----hhHHHHHHHHHHHhCCChhHHHHHHhhcCC-CCHHH-HHHHHHHhhhcC
Q 044579 349 LFCRKAIRQNSR-------------S-----QDLLELSKEIVGYAKGNPLALEVLGSSLYQ-KSKQQ-WKVKLQNLKLIS 408 (1103)
Q Consensus 349 Lf~~~a~~~~~~-------------~-----~~~~~~~~~i~~~~~G~PLal~~lg~~L~~-~~~~~-w~~~l~~l~~~~ 408 (1103)
+...+.-..... . ..........++.+||--.=|..+++.++. .++.+ ...++.+
T Consensus 224 yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~q----- 298 (431)
T PF10443_consen 224 YVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIISQ----- 298 (431)
T ss_pred HHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHHH-----
Confidence 999887432110 0 123344556777888888888888888764 33332 2222221
Q ss_pred CcchhhHHHhhhc-------CCCHHHHHHHhhhhccCCCCCHHHHHHHhc----C--CCchHHHhhccCeeEcC
Q 044579 409 EPNIYNVLKISYD-------DLNPEEKKIFLDIACFFKGEDADFVTRIQD----D--PTSLDNIVDKSLITISD 469 (1103)
Q Consensus 409 ~~~i~~~l~~sy~-------~L~~~~k~~fl~~a~f~~~~~~~~~~~~~~----~--~~~l~~L~~~sLi~~~~ 469 (1103)
.+..+.+.-+. ..+-...+.+..+-.+-+.....+-..++. + +..+..|.+..||++..
T Consensus 299 --sa~eI~k~fl~~~~~~~~~~~Wt~~QaW~LIk~Ls~~~~v~Y~~ll~~~lFk~~~E~~L~aLe~aeLItv~~ 370 (431)
T PF10443_consen 299 --SASEIRKMFLLDDSDDAKSLKWTREQAWYLIKLLSKNDEVPYNELLLSPLFKGNDETALRALEQAELITVTT 370 (431)
T ss_pred --HHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHhccCCcCcHHHHHcccccCCCChHHHHHHHHCCcEEEEe
Confidence 11122222111 111112233333333333333333332222 2 56899999999999875
No 208
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.67 E-value=0.021 Score=62.23 Aligned_cols=24 Identities=38% Similarity=0.407 Sum_probs=21.0
Q ss_pred EEEEeecCCChhHHHHHHHHHHHh
Q 044579 207 IVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
.|.|.|.+|+|||++|++++....
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~lg 46 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKRD 46 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 567999999999999999998653
No 209
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.01 Score=72.10 Aligned_cols=119 Identities=15% Similarity=0.226 Sum_probs=77.0
Q ss_pred CCccccchhHHHHHHhhcc-------cCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHH
Q 044579 182 DGLVGLNTRIEEMKSLLCL-------ESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHV 254 (1103)
Q Consensus 182 ~~~vGr~~~~~~l~~~L~~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~ 254 (1103)
..++|.+.-++.+.+.+.. .+....+....|+.|+|||.||++++..+-..=+..+-+ +.++. .
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~-DMSEy--------~ 561 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRI-DMSEY--------M 561 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceee-chHHH--------H
Confidence 4689999999888777651 223356788899999999999999998764322333322 22222 2
Q ss_pred HHHHHHhhhCCCCccccccchHHHHHhhcCCce-EEEEeCCCC-CHhHHHHHhCCCC
Q 044579 255 RDEVISQVLGENLKIGTLIVPQNIKKRLQRVKV-LIVLDDVND-EFTQLESLAGGVD 309 (1103)
Q Consensus 255 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~-LlVLDdv~~-~~~~l~~l~~~~~ 309 (1103)
.+...+.+.|.....-.-+.+-.+-+..++++| +|.||.|+- ..+.++-|.+.++
T Consensus 562 EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlD 618 (786)
T COG0542 562 EKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLD 618 (786)
T ss_pred HHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhc
Confidence 344566677766554333444477777888887 788899962 3444555555443
No 210
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.036 Score=66.89 Aligned_cols=180 Identities=17% Similarity=0.235 Sum_probs=104.3
Q ss_pred CCCCCccccchhHHHHHHhhc----------ccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcc
Q 044579 179 TDLDGLVGLNTRIEEMKSLLC----------LESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANK 248 (1103)
Q Consensus 179 ~~~~~~vGr~~~~~~l~~~L~----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~ 248 (1103)
...+++.|.++-.++|.+... .+..-++=|.++|++|.|||-||++++-.- .+-|+....
T Consensus 308 V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-----gVPF~svSG----- 377 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSVSG----- 377 (774)
T ss_pred CccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-----CCceeeech-----
Confidence 345778898887777766544 122235678999999999999999999753 233343111
Q ss_pred cChHHHHHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCC---------------C-HhHHHHHhCCCCccC
Q 044579 249 MGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVND---------------E-FTQLESLAGGVDRFS 312 (1103)
Q Consensus 249 ~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~---------------~-~~~l~~l~~~~~~~~ 312 (1103)
.+++....+.. ...........-...+.++.+|+++. + ...+..+....+.+.
T Consensus 378 -------SEFvE~~~g~~----asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~ 446 (774)
T KOG0731|consen 378 -------SEFVEMFVGVG----ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFE 446 (774)
T ss_pred -------HHHHHHhcccc----hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCc
Confidence 11111111110 00000011112234577888887752 0 112455555555554
Q ss_pred CCcEE--EEEeCchhhHhh-----cCcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhH
Q 044579 313 PGSRI--VITTRDKQVLDK-----CGVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLA 381 (1103)
Q Consensus 313 ~gs~I--IiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLa 381 (1103)
....| +-+|...+++.. -..++.+.++.-+.....++|.-|+-....+ .+..++++ ++...-|.+=|
T Consensus 447 ~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 447 TSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred CCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHH
Confidence 44433 335554444332 2456788899999999999999988544433 34456666 88888888754
No 211
>PRK09183 transposase/IS protein; Provisional
Probab=96.65 E-value=0.0055 Score=66.35 Aligned_cols=34 Identities=24% Similarity=0.215 Sum_probs=25.5
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHhccCCceEEE
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFM 239 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 239 (1103)
..+.|+|.+|+|||+||.+++......-..+.|+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~ 136 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT 136 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 4688999999999999999988654433334444
No 212
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.61 E-value=0.042 Score=61.68 Aligned_cols=93 Identities=13% Similarity=0.092 Sum_probs=62.7
Q ss_pred CCceEEEEeCCCC-CHhHHHHHhCCCCccCCCcEEEEEeCchh-hHhhc-CcceEEEccCCChhHHHHHHHHhhhccCCC
Q 044579 284 RVKVLIVLDDVND-EFTQLESLAGGVDRFSPGSRIVITTRDKQ-VLDKC-GVSYIYKVKRLEHDNALELFCRKAIRQNSR 360 (1103)
Q Consensus 284 ~k~~LlVLDdv~~-~~~~l~~l~~~~~~~~~gs~IIiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 360 (1103)
+++=++|+|+++. +.....+|+..+....+++.+|.+|.+.+ ++... .....+.+.+++.+++.+.+.... ..
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~---~~- 182 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREV---TM- 182 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHcc---CC-
Confidence 4556888999873 23456677777776677887777776643 44442 334578999999999998886532 11
Q ss_pred ChhHHHHHHHHHHHhCCChhHHH
Q 044579 361 SQDLLELSKEIVGYAKGNPLALE 383 (1103)
Q Consensus 361 ~~~~~~~~~~i~~~~~G~PLal~ 383 (1103)
. .+.+..+++.++|.|....
T Consensus 183 ~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 183 S---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred C---HHHHHHHHHHcCCCHHHHH
Confidence 1 2336688999999996443
No 213
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.58 E-value=0.005 Score=63.22 Aligned_cols=119 Identities=16% Similarity=0.232 Sum_probs=54.3
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHHH--hccCCceEEEEechhhhcccC-----hHH-------HHHHHHHhhhCCCCcc
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQI--SRHFQGKCFMANVREKANKMG-----VIH-------VRDEVISQVLGENLKI 269 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~--~~~F~~~~~~~~~~~~~~~~~-----~~~-------~~~~ll~~l~~~~~~~ 269 (1103)
+..+|.+.|++|.|||.||.+.+-+. ..+|+..++....-+..+.-+ ..+ -..+.+..+.+...-.
T Consensus 18 ~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~~d~l~~~~~~~~~~ 97 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPIYDALEELFGKEKLE 97 (205)
T ss_dssp H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHHHHHHTTTS-TTCHH
T ss_pred hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHHHHHHHHHhChHhHH
Confidence 34589999999999999999988642 467777777754432222111 111 1111222222111000
Q ss_pred ccccch--H-HHHHhhcCC---ceEEEEeCCCC-CHhHHHHHhCCCCccCCCcEEEEEeCchh
Q 044579 270 GTLIVP--Q-NIKKRLQRV---KVLIVLDDVND-EFTQLESLAGGVDRFSPGSRIVITTRDKQ 325 (1103)
Q Consensus 270 ~~~~~~--~-~l~~~L~~k---~~LlVLDdv~~-~~~~l~~l~~~~~~~~~gs~IIiTTR~~~ 325 (1103)
.-...+ . .--..++++ ..++|+|++.+ ...++..+... .+.||+||++--..+
T Consensus 98 ~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~~GD~~Q 157 (205)
T PF02562_consen 98 ELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKIIITGDPSQ 157 (205)
T ss_dssp HHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEEEE----
T ss_pred HHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEEEecCcee
Confidence 000000 0 001223443 47999999963 45567777655 579999999876553
No 214
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.54 E-value=0.03 Score=57.34 Aligned_cols=56 Identities=23% Similarity=0.376 Sum_probs=42.1
Q ss_pred CCCCccccchhHHHHHHhhc--ccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCc
Q 044579 180 DLDGLVGLNTRIEEMKSLLC--LESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQG 235 (1103)
Q Consensus 180 ~~~~~vGr~~~~~~l~~~L~--~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~ 235 (1103)
+...++|.+...+.|.+--. ......--|.+||.-|+|||.|++++.+.+....-.
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glr 115 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLR 115 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCe
Confidence 34678999999888754322 122234568899999999999999999998877665
No 215
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.52 E-value=0.012 Score=74.58 Aligned_cols=50 Identities=16% Similarity=0.283 Sum_probs=38.5
Q ss_pred CCccccchhHHHHHHhhcc-------cCCCeEEEEEeecCCChhHHHHHHHHHHHhc
Q 044579 182 DGLVGLNTRIEEMKSLLCL-------ESHDVRIVGIWGMGGIGKTTIASVVFHQISR 231 (1103)
Q Consensus 182 ~~~vGr~~~~~~l~~~L~~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (1103)
..++|.+.-++.+.+.+.. ......++.++|+.|+|||.+|++++..+-.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~ 622 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYG 622 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhC
Confidence 4678999888888777642 1223457899999999999999999987643
No 216
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.51 E-value=0.01 Score=75.54 Aligned_cols=51 Identities=18% Similarity=0.294 Sum_probs=39.5
Q ss_pred CCccccchhHHHHHHhhccc------CC-CeEEEEEeecCCChhHHHHHHHHHHHhcc
Q 044579 182 DGLVGLNTRIEEMKSLLCLE------SH-DVRIVGIWGMGGIGKTTIASVVFHQISRH 232 (1103)
Q Consensus 182 ~~~vGr~~~~~~l~~~L~~~------~~-~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (1103)
..++|.+..++.+...+... +. ...++.+.|+.|+|||++|+.++......
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~ 622 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD 622 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 46899999999988777631 11 24578899999999999999999876443
No 217
>PRK06526 transposase; Provisional
Probab=96.49 E-value=0.0024 Score=68.65 Aligned_cols=34 Identities=24% Similarity=0.117 Sum_probs=25.9
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhccCCceEE
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCF 238 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~ 238 (1103)
...+.|+|.+|+|||+||.++......+-..+.|
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f 131 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLF 131 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhh
Confidence 3468999999999999999999876544333344
No 218
>PRK07261 topology modulation protein; Provisional
Probab=96.49 E-value=0.0087 Score=60.45 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.6
Q ss_pred EEEEeecCCChhHHHHHHHHHHH
Q 044579 207 IVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
.|+|+|++|+||||||+++....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998764
No 219
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.47 E-value=0.00035 Score=64.63 Aligned_cols=78 Identities=14% Similarity=0.177 Sum_probs=55.3
Q ss_pred ceEEEEEcCCCCCCCCCcc--ccccccccccccccccccccccccCCcceEecCCCCCCCccCCCCCCCCCccEEEecCC
Q 044579 575 KLRYLHWHGYPLKTLPFDF--ELENLIELRLPYSKVEQIWEGKKEASKLKSIDLCHSQHLIRMPDLSEIPNLERTNFFNC 652 (1103)
Q Consensus 575 ~Lr~L~l~~~~l~~lp~~~--~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~~ 652 (1103)
.|...++++|.++++|..| .++.++.|+|.+|.|..+|..+..++.|+.|+++.|.+...+..+..+.+|-.|+..++
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCC
Confidence 4666777777777777776 45577888888888888887788888888888888776555444555666666665553
No 220
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.47 E-value=0.064 Score=60.13 Aligned_cols=37 Identities=24% Similarity=0.379 Sum_probs=28.3
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEE
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMA 240 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 240 (1103)
..++|+++|.+|+||||++..++..+..+-..+.++.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~ 276 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFIT 276 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEe
Confidence 3579999999999999999999987654433344443
No 221
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.47 E-value=0.00016 Score=66.85 Aligned_cols=38 Identities=26% Similarity=0.335 Sum_probs=18.2
Q ss_pred CCCCCCCEEeCCCCCccccCccccCCCCCCEEeccCCc
Q 044579 807 CCLSSLQWLDLSGNNFESLPSSIKQLSQLRKLDLSNCN 844 (1103)
Q Consensus 807 ~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~ 844 (1103)
..++.|+.|+++.|.+...|.-+..|.+|-.|+..+|.
T Consensus 97 Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 97 AAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred hhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCc
Confidence 33444445555555444444444444444444444444
No 222
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.40 E-value=0.00022 Score=73.27 Aligned_cols=244 Identities=15% Similarity=0.099 Sum_probs=116.2
Q ss_pred cccccccccccccccc-----ccccccccCCcceEecCCCCCCC---cc--------CCCCCCCCCccEEEecCCCCCCc
Q 044579 594 ELENLIELRLPYSKVE-----QIWEGKKEASKLKSIDLCHSQHL---IR--------MPDLSEIPNLERTNFFNCTNLVL 657 (1103)
Q Consensus 594 ~l~~L~~L~L~~n~i~-----~l~~~~~~l~~L~~L~L~~~~~~---~~--------~p~l~~l~~L~~L~L~~~~~l~~ 657 (1103)
.+..+++++|++|.|. .+...+.+-.+|+..+++.-... .. +|.+-++|.|+..+|+.|..-..
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 3667788888888875 34455666777777777664211 11 12355667777777777655444
Q ss_pred ccc----cccCCCcccEEEccCCCCCcccCCCCCCCCCcEEEccCCcCCCcCCCcCCCccEEecCCccceecCcc-----
Q 044579 658 VPS----SIQNFNNLSMLCFRGCESLRSFPRDIHFVSPVTIDFSFCVNLTEFPKISGKITELNLCDTAIEEVPSS----- 728 (1103)
Q Consensus 658 ~~~----~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~----- 728 (1103)
.|+ -|++-+.|.+|.|++|. ++.+...---..|.+ |..+.+. ..-+.|+......|++..-|..
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~--la~nKKa----a~kp~Le~vicgrNRlengs~~~~a~~ 180 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFH--LAYNKKA----ADKPKLEVVICGRNRLENGSKELSAAL 180 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHH--HHHHhhh----ccCCCceEEEeccchhccCcHHHHHHH
Confidence 433 34455666666666642 211111000000000 0001111 1123566777777777655442
Q ss_pred ccCCCCCCEEecCCCccccc-----ccccccCCCCCcEEeecCCCCCCcc-ccCCccccCCCCCCeeeccCCCCCCCCCC
Q 044579 729 VECLTNLKELYLSRCSTLNR-----LSTSICKLKSLHELILSDCLSLETI-TELPSSFANLEGLEKLVLVGCSKLNKLPH 802 (1103)
Q Consensus 729 ~~~l~~L~~L~L~~~~~~~~-----lp~~l~~l~~L~~L~L~~~~~l~~i-~~lp~~~~~l~~L~~L~L~~~~~~~~lp~ 802 (1103)
+..-.+|+.+.+..|.+--. +-..+..+.+|+.|+|.+|.....- ..+...+...+.|+.|.+.+|-+...-..
T Consensus 181 l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~ 260 (388)
T COG5238 181 LESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVK 260 (388)
T ss_pred HHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHH
Confidence 23335677777776654321 1112334567777777765322110 00112233445566666666654432110
Q ss_pred ----CcccCCCCCCCEEeCCCCCcc-------ccCccc-cCCCCCCEEeccCCc
Q 044579 803 ----SIDFCCLSSLQWLDLSGNNFE-------SLPSSI-KQLSQLRKLDLSNCN 844 (1103)
Q Consensus 803 ----~~~~~~l~~L~~L~Ls~n~l~-------~lp~~i-~~l~~L~~L~L~~n~ 844 (1103)
...-...|+|..|-..+|.+. ++|... ..+|-|..|.+.+|+
T Consensus 261 ~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr 314 (388)
T COG5238 261 SVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNR 314 (388)
T ss_pred HHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCc
Confidence 001112455666666655332 122211 334555555555554
No 223
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.39 E-value=0.058 Score=68.17 Aligned_cols=79 Identities=18% Similarity=0.261 Sum_probs=52.2
Q ss_pred CcchHHHHHHHHHHHHHhcccCCCCCC-----------CCCccccchhHHHHHHhhcc----cCCCeEEEEEeecCCChh
Q 044579 154 SRNDAELVEKIVEDISKKLEDMSESTD-----------LDGLVGLNTRIEEMKSLLCL----ESHDVRIVGIWGMGGIGK 218 (1103)
Q Consensus 154 ~~~e~~~i~~iv~~i~~~l~~~~~~~~-----------~~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGK 218 (1103)
...|+..+...++.+...... ..... ....+|.+.-.+++.+++.. +.....++.++|++|+||
T Consensus 282 ~~~~~~~~~~yl~~~~~ip~~-~~~~~~~~~~~~~~~l~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GK 360 (775)
T TIGR00763 282 SSSEFTVTRNYLDWLTDLPWG-KYSKENLDLKRAKEILDEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGK 360 (775)
T ss_pred CCchHHHHHHHHHHHHCCCCc-ccccchhhHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCH
Confidence 456777777777666443211 11111 23478888888888776541 222345799999999999
Q ss_pred HHHHHHHHHHHhccC
Q 044579 219 TTIASVVFHQISRHF 233 (1103)
Q Consensus 219 TtLA~~v~~~~~~~F 233 (1103)
|++|+.+++.+...|
T Consensus 361 T~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 361 TSLGKSIAKALNRKF 375 (775)
T ss_pred HHHHHHHHHHhcCCe
Confidence 999999999875554
No 224
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.39 E-value=0.15 Score=57.21 Aligned_cols=93 Identities=15% Similarity=0.234 Sum_probs=61.2
Q ss_pred CCceEEEEeCCCC-CHhHHHHHhCCCCccCCCcEEEEEeCc-hhhHhhc-CcceEEEccCCChhHHHHHHHHhhhccCCC
Q 044579 284 RVKVLIVLDDVND-EFTQLESLAGGVDRFSPGSRIVITTRD-KQVLDKC-GVSYIYKVKRLEHDNALELFCRKAIRQNSR 360 (1103)
Q Consensus 284 ~k~~LlVLDdv~~-~~~~l~~l~~~~~~~~~gs~IIiTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 360 (1103)
+++=++|+|+++. +......|+..+....+++.+|.+|.+ ..++... .....+.+.+++.++..+.+.... .+
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~~ 206 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----VA 206 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----CC
Confidence 3445788899973 345567777777766778876666655 4444442 334788999999999999997642 11
Q ss_pred ChhHHHHHHHHHHHhCCChhHHHHHH
Q 044579 361 SQDLLELSKEIVGYAKGNPLALEVLG 386 (1103)
Q Consensus 361 ~~~~~~~~~~i~~~~~G~PLal~~lg 386 (1103)
. ...++..++|.|+....+.
T Consensus 207 --~----~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 207 --D----ADALLAEAGGAPLAALALA 226 (342)
T ss_pred --h----HHHHHHHcCCCHHHHHHHH
Confidence 1 1235778899997554443
No 225
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.033 Score=64.28 Aligned_cols=154 Identities=18% Similarity=0.217 Sum_probs=84.5
Q ss_pred CCCccccchhHHHHHHhhcc----------cCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccC
Q 044579 181 LDGLVGLNTRIEEMKSLLCL----------ESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMG 250 (1103)
Q Consensus 181 ~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 250 (1103)
..++=|++..+.+|.+++.. +-...|=|.++|++|.|||.||++++.+..-.| +. ++.
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf-----~~----isA--- 256 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPF-----LS----ISA--- 256 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCce-----Ee----ecc---
Confidence 46678999999998877652 112356789999999999999999998764443 22 111
Q ss_pred hHHHHHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCC-----CHhH-------HHHHhCCCC---c---cC
Q 044579 251 VIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVND-----EFTQ-------LESLAGGVD---R---FS 312 (1103)
Q Consensus 251 ~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~-----~~~~-------l~~l~~~~~---~---~~ 312 (1103)
-++++...|+..+ .......+.-..-++++++|++|. +..| ...|....+ . .+
T Consensus 257 -----peivSGvSGESEk----kiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g 327 (802)
T KOG0733|consen 257 -----PEIVSGVSGESEK----KIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKG 327 (802)
T ss_pred -----hhhhcccCcccHH----HHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCC
Confidence 1333333332210 000122333356689999999963 0111 122222221 1 12
Q ss_pred CCcEEEE-EeCchhhHhhc----CcceEEEccCCChhHHHHHHHHhhh
Q 044579 313 PGSRIVI-TTRDKQVLDKC----GVSYIYKVKRLEHDNALELFCRKAI 355 (1103)
Q Consensus 313 ~gs~IIi-TTR~~~v~~~~----~~~~~~~l~~L~~~ea~~Lf~~~a~ 355 (1103)
.+.-||- |+|...+-... ..++.+.+.--++..-.+++...+-
T Consensus 328 ~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~ 375 (802)
T KOG0733|consen 328 DPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICR 375 (802)
T ss_pred CCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHh
Confidence 3333333 44533332221 3456677777777766666666553
No 226
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.35 E-value=0.041 Score=59.21 Aligned_cols=172 Identities=17% Similarity=0.180 Sum_probs=90.5
Q ss_pred CCCccccchhHHHHHHhhccc--CCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhc--ccChHHHHH
Q 044579 181 LDGLVGLNTRIEEMKSLLCLE--SHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKAN--KMGVIHVRD 256 (1103)
Q Consensus 181 ~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~--~~~~~~~~~ 256 (1103)
-..++|-.++.+++..++... -++..-|.|+|+.|.|||+|......+ .+.|.....+..+..... +..+..+..
T Consensus 23 ~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~r 101 (408)
T KOG2228|consen 23 HINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGITR 101 (408)
T ss_pred CcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHHH
Confidence 356899999999998888721 223346889999999999998877766 344444444443322211 112233333
Q ss_pred HHHHhhhCCCCcccc-ccchHHHHHhhc------CCceEEEEeCCCCC---HhH--HHHHhCC-CCccCCCcEEEEEeCc
Q 044579 257 EVISQVLGENLKIGT-LIVPQNIKKRLQ------RVKVLIVLDDVNDE---FTQ--LESLAGG-VDRFSPGSRIVITTRD 323 (1103)
Q Consensus 257 ~ll~~l~~~~~~~~~-~~~~~~l~~~L~------~k~~LlVLDdv~~~---~~~--l~~l~~~-~~~~~~gs~IIiTTR~ 323 (1103)
++..++.......+. .+....+-..|+ +-++++|+|.+|-- ..| +-.+... -....|-+-|-+|||-
T Consensus 102 ql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrl 181 (408)
T KOG2228|consen 102 QLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRL 181 (408)
T ss_pred HHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccc
Confidence 333333222111111 122224444443 23699999988621 111 2222111 1123567788899995
Q ss_pred hh-------hHhhcCcceEEEccCCChhHHHHHHHHh
Q 044579 324 KQ-------VLDKCGVSYIYKVKRLEHDNALELFCRK 353 (1103)
Q Consensus 324 ~~-------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 353 (1103)
.- |-..+.-..++-++.++-++-.++++..
T Consensus 182 d~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~l 218 (408)
T KOG2228|consen 182 DILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKL 218 (408)
T ss_pred cHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHH
Confidence 42 2222222235555666666655555443
No 227
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.34 E-value=0.0026 Score=66.09 Aligned_cols=108 Identities=27% Similarity=0.287 Sum_probs=65.8
Q ss_pred CCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCC--CCCCCCCCCcccCCCCCCCEEeCCCCCccccC--cccc
Q 044579 755 KLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGC--SKLNKLPHSIDFCCLSSLQWLDLSGNNFESLP--SSIK 830 (1103)
Q Consensus 755 ~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~--~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~lp--~~i~ 830 (1103)
.+..|+.|.+.++... .+..+| .|++|+.|.++.| .....++ .....+|+|++|+|++|++..+. ..+.
T Consensus 41 ~~~~le~ls~~n~glt-t~~~~P----~Lp~LkkL~lsdn~~~~~~~l~--vl~e~~P~l~~l~ls~Nki~~lstl~pl~ 113 (260)
T KOG2739|consen 41 EFVELELLSVINVGLT-TLTNFP----KLPKLKKLELSDNYRRVSGGLE--VLAEKAPNLKVLNLSGNKIKDLSTLRPLK 113 (260)
T ss_pred cccchhhhhhhcccee-ecccCC----CcchhhhhcccCCcccccccce--ehhhhCCceeEEeecCCccccccccchhh
Confidence 3444555555543322 222233 4677888888887 4444443 22344589999999999777321 2457
Q ss_pred CCCCCCEEeccCCcCCcccC------ccccccccceecccccccc
Q 044579 831 QLSQLRKLDLSNCNMLLSLP------ELPLFLEDLEARNCKRLQF 869 (1103)
Q Consensus 831 ~l~~L~~L~L~~n~~l~~lp------~~~~~L~~L~~~~c~~l~~ 869 (1103)
.+.+|..|++.+|.-++.-- .++++|+.|+-.++....-
T Consensus 114 ~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~Ea 158 (260)
T KOG2739|consen 114 ELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGEEA 158 (260)
T ss_pred hhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCCccc
Confidence 78889999999998766221 2456667777666666654
No 228
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.028 Score=63.64 Aligned_cols=130 Identities=20% Similarity=0.236 Sum_probs=75.0
Q ss_pred CCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHHHHHHhhhCCCCccccccchHHHHHhh
Q 044579 203 HDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRL 282 (1103)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L 282 (1103)
.....+.+.|++|+|||+||..++.. ..|+.+-.+. ...--++.+-.+-. .......+.-
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~--S~FPFvKiiS----pe~miG~sEsaKc~--------------~i~k~F~DAY 595 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS--SDFPFVKIIS----PEDMIGLSESAKCA--------------HIKKIFEDAY 595 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh--cCCCeEEEeC----hHHccCccHHHHHH--------------HHHHHHHHhh
Confidence 45677889999999999999999864 6787554332 00111111100000 0000222333
Q ss_pred cCCceEEEEeCCCCCHhH------------HHHHhCCCCcc---CCCcEEEEEeCchhhHhhcCc----ceEEEccCCCh
Q 044579 283 QRVKVLIVLDDVNDEFTQ------------LESLAGGVDRF---SPGSRIVITTRDKQVLDKCGV----SYIYKVKRLEH 343 (1103)
Q Consensus 283 ~~k~~LlVLDdv~~~~~~------------l~~l~~~~~~~---~~gs~IIiTTR~~~v~~~~~~----~~~~~l~~L~~ 343 (1103)
+..--.||+||++ ..-. ++.|...+... +..--|+-||-.+.++..++. ...+.|+.++.
T Consensus 596 kS~lsiivvDdiE-rLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 596 KSPLSIIVVDDIE-RLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTT 674 (744)
T ss_pred cCcceEEEEcchh-hhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCc
Confidence 4555789999996 2222 33333222222 223345668888888888753 45789999987
Q ss_pred -hHHHHHHHHh
Q 044579 344 -DNALELFCRK 353 (1103)
Q Consensus 344 -~ea~~Lf~~~ 353 (1103)
++..+.++..
T Consensus 675 ~~~~~~vl~~~ 685 (744)
T KOG0741|consen 675 GEQLLEVLEEL 685 (744)
T ss_pred hHHHHHHHHHc
Confidence 6777777654
No 229
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.32 E-value=0.015 Score=73.94 Aligned_cols=133 Identities=12% Similarity=0.154 Sum_probs=72.0
Q ss_pred CCccccchhHHHHHHhhcc-------cCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHH
Q 044579 182 DGLVGLNTRIEEMKSLLCL-------ESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHV 254 (1103)
Q Consensus 182 ~~~vGr~~~~~~l~~~L~~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~ 254 (1103)
..++|.+.-++.+...+.. .......+.++|+.|+|||+||+.+++.+-..-...+-+ +..+......+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~-d~s~~~~~~~~--- 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRL-DMSEYMEKHTV--- 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEE-EchhccccccH---
Confidence 5688998888888776651 111234677899999999999999998763322222222 22222222221
Q ss_pred HHHHHHhhhCCCCccccccchHHHHHhhcCCc-eEEEEeCCCC-CHhHHHHHhCCCCcc-----------CCCcEEEEEe
Q 044579 255 RDEVISQVLGENLKIGTLIVPQNIKKRLQRVK-VLIVLDDVND-EFTQLESLAGGVDRF-----------SPGSRIVITT 321 (1103)
Q Consensus 255 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~-~LlVLDdv~~-~~~~l~~l~~~~~~~-----------~~gs~IIiTT 321 (1103)
..+.+.............+.+.++.++ -+++||+++. +.+.++.|...+... -..+.||+||
T Consensus 585 -----~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Ts 659 (821)
T CHL00095 585 -----SKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTS 659 (821)
T ss_pred -----HHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeC
Confidence 222232211111112224555665555 5889999973 233344444443321 1345567777
Q ss_pred Cc
Q 044579 322 RD 323 (1103)
Q Consensus 322 R~ 323 (1103)
..
T Consensus 660 n~ 661 (821)
T CHL00095 660 NL 661 (821)
T ss_pred Cc
Confidence 64
No 230
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.32 E-value=0.013 Score=62.77 Aligned_cols=89 Identities=18% Similarity=0.262 Sum_probs=55.1
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHHHHHHhh-hCCCC---cccccc-------
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRDEVISQV-LGENL---KIGTLI------- 273 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ll~~l-~~~~~---~~~~~~------- 273 (1103)
-+-++|.|.+|.||||||+.+++.++.+|+..+++.-+.+.. ..+.++.+++...- ..... ...+..
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer~--~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERT--REGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCc--HHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 356899999999999999999999988888888887665432 22333444433221 00000 001100
Q ss_pred --chHHHHHhh--c-CCceEEEEeCCC
Q 044579 274 --VPQNIKKRL--Q-RVKVLIVLDDVN 295 (1103)
Q Consensus 274 --~~~~l~~~L--~-~k~~LlVLDdv~ 295 (1103)
.+..+-+++ + ++.+|+++||+-
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dslt 173 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNIF 173 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeChh
Confidence 011334444 3 889999999995
No 231
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.30 E-value=0.0035 Score=59.34 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=21.4
Q ss_pred EEEEeecCCChhHHHHHHHHHHH
Q 044579 207 IVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
+|+|.|++|+||||+|+.+++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999876
No 232
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.28 E-value=0.013 Score=60.85 Aligned_cols=110 Identities=15% Similarity=0.241 Sum_probs=61.0
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHhccCCceEEEE-echhhhcccChHHHHHHHHHhhhCCCCccccccchHHHHHhhcC
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMA-NVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQR 284 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~-~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~ 284 (1103)
.++.|.|..|.||||++..+...+.......++.. +-.+.... . ...++.+ .........-...++..++.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~-~----~~~~i~q---~~vg~~~~~~~~~i~~aLr~ 73 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHE-S----KRSLINQ---REVGLDTLSFENALKAALRQ 73 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcccccc-C----ccceeee---cccCCCccCHHHHHHHHhcC
Confidence 37899999999999999998887765555444432 11110000 0 0001100 00111111122367777877
Q ss_pred CceEEEEeCCCCCHhHHHHHhCCCCccCCCcEEEEEeCchhhH
Q 044579 285 VKVLIVLDDVNDEFTQLESLAGGVDRFSPGSRIVITTRDKQVL 327 (1103)
Q Consensus 285 k~~LlVLDdv~~~~~~l~~l~~~~~~~~~gs~IIiTTR~~~v~ 327 (1103)
.+=++++|.+. +.+.+...... ...|..++.|+-...+.
T Consensus 74 ~pd~ii~gEir-d~e~~~~~l~~---a~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 74 DPDVILVGEMR-DLETIRLALTA---AETGHLVMSTLHTNSAA 112 (198)
T ss_pred CcCEEEEcCCC-CHHHHHHHHHH---HHcCCEEEEEecCCcHH
Confidence 78899999997 55544443322 13456677777655443
No 233
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.27 E-value=0.0046 Score=68.64 Aligned_cols=48 Identities=17% Similarity=0.291 Sum_probs=40.6
Q ss_pred CccccchhHHHHHHhhccc----CCCeEEEEEeecCCChhHHHHHHHHHHHh
Q 044579 183 GLVGLNTRIEEMKSLLCLE----SHDVRIVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 183 ~~vGr~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
+++|.++.++++.+++... ....++++++|++|.||||||+++++.+.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 7999999999998887632 23468999999999999999999998653
No 234
>PRK04132 replication factor C small subunit; Provisional
Probab=96.27 E-value=0.12 Score=64.35 Aligned_cols=151 Identities=14% Similarity=0.154 Sum_probs=90.2
Q ss_pred ee--cCCChhHHHHHHHHHHH-hccCCc-eEEEEechhhhcccChHHHHHHHHHhhhCCCCccccccchHHHHHhhcCCc
Q 044579 211 WG--MGGIGKTTIASVVFHQI-SRHFQG-KCFMANVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVK 286 (1103)
Q Consensus 211 ~G--~gGiGKTtLA~~v~~~~-~~~F~~-~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~ 286 (1103)
.| +.++||||+|.++++++ .+.+.. .+-+. .++..++.. .++++........ . -..+.
T Consensus 570 ~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElN----ASd~rgid~-IR~iIk~~a~~~~-~------------~~~~~ 631 (846)
T PRK04132 570 GGNLPTVLHNTTAALALARELFGENWRHNFLELN----ASDERGINV-IREKVKEFARTKP-I------------GGASF 631 (846)
T ss_pred cCCCCCcccHHHHHHHHHHhhhcccccCeEEEEe----CCCcccHHH-HHHHHHHHHhcCC-c------------CCCCC
Confidence 36 78899999999999986 323322 23332 222233332 2333333221100 0 01245
Q ss_pred eEEEEeCCCC-CHhHHHHHhCCCCccCCCcEEEEEeCchh-hHhhc-CcceEEEccCCChhHHHHHHHHhhhccCCCChh
Q 044579 287 VLIVLDDVND-EFTQLESLAGGVDRFSPGSRIVITTRDKQ-VLDKC-GVSYIYKVKRLEHDNALELFCRKAIRQNSRSQD 363 (1103)
Q Consensus 287 ~LlVLDdv~~-~~~~l~~l~~~~~~~~~gs~IIiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~ 363 (1103)
-++|+|+++. +.++..+|...+......+++|.++.+.. +.... .....+++.+++.++..+.+...+-..+...
T Consensus 632 KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i-- 709 (846)
T PRK04132 632 KIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL-- 709 (846)
T ss_pred EEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCC--
Confidence 7999999983 23456667666665566777777666543 33222 3357899999999998888877653322211
Q ss_pred HHHHHHHHHHHhCCChhH
Q 044579 364 LLELSKEIVGYAKGNPLA 381 (1103)
Q Consensus 364 ~~~~~~~i~~~~~G~PLa 381 (1103)
..+....|++.++|.+..
T Consensus 710 ~~e~L~~Ia~~s~GDlR~ 727 (846)
T PRK04132 710 TEEGLQAILYIAEGDMRR 727 (846)
T ss_pred CHHHHHHHHHHcCCCHHH
Confidence 235678899999998844
No 235
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.27 E-value=0.0085 Score=66.85 Aligned_cols=35 Identities=14% Similarity=0.252 Sum_probs=29.1
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHhccCCceEEEE
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMA 240 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 240 (1103)
..+.++|..|+|||+||.++++.+..+-..++|+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 56999999999999999999998766555566665
No 236
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.25 E-value=0.0052 Score=64.54 Aligned_cols=34 Identities=24% Similarity=0.362 Sum_probs=29.2
Q ss_pred EEEEeecCCChhHHHHHHHHHHHhccCCceEEEE
Q 044579 207 IVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMA 240 (1103)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 240 (1103)
.++|.|..|.||||++..+.......|+.+..+.
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 5779999999999999999999999996665554
No 237
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.24 E-value=0.016 Score=64.63 Aligned_cols=88 Identities=19% Similarity=0.166 Sum_probs=53.4
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHhccCC-ceEEEEechhhhcccChHHHHHHHHHhhhCCCCcccccc------chHHH
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQISRHFQ-GKCFMANVREKANKMGVIHVRDEVISQVLGENLKIGTLI------VPQNI 278 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~-~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~------~~~~l 278 (1103)
+-++|+|.+|+|||||++.+++.+..+.+ ..+++.-+.+ ....+.++.+.+...+........... ....+
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgE--R~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~ 211 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDE--RPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLER 211 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecC--CCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHH
Confidence 45689999999999999999998766543 3334433433 234556666766665443221111111 11112
Q ss_pred HHhh--cCCceEEEEeCCC
Q 044579 279 KKRL--QRVKVLIVLDDVN 295 (1103)
Q Consensus 279 ~~~L--~~k~~LlVLDdv~ 295 (1103)
-+++ ++++++||+|++.
T Consensus 212 Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 212 AKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred HHHHHHcCCCEEEEEeCcH
Confidence 2222 6889999999995
No 238
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.22 E-value=0.03 Score=63.40 Aligned_cols=140 Identities=13% Similarity=0.141 Sum_probs=77.4
Q ss_pred CccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccC---------------------CceEEEEe
Q 044579 183 GLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHF---------------------QGKCFMAN 241 (1103)
Q Consensus 183 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F---------------------~~~~~~~~ 241 (1103)
.++|-+....++..+..........+.++|++|+||||+|.++++.+-... +....+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~- 80 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN- 80 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec-
Confidence 356667777777776653333344699999999999999999999765322 1122221
Q ss_pred chhhhcccC---hHHHHHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCC-CHhHHHHHhCCCCccCCCcEE
Q 044579 242 VREKANKMG---VIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVND-EFTQLESLAGGVDRFSPGSRI 317 (1103)
Q Consensus 242 ~~~~~~~~~---~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~-~~~~l~~l~~~~~~~~~gs~I 317 (1103)
.+.... ..+..+++........ ..++.-++|+|+++. ..+...++...+......+++
T Consensus 81 ---~s~~~~~~i~~~~vr~~~~~~~~~~---------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~ 142 (325)
T COG0470 81 ---PSDLRKIDIIVEQVRELAEFLSESP---------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRF 142 (325)
T ss_pred ---ccccCCCcchHHHHHHHHHHhccCC---------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEE
Confidence 111111 1112222222111000 025577899999973 223345555555555678888
Q ss_pred EEEeCch-hhHhhc-CcceEEEccCC
Q 044579 318 VITTRDK-QVLDKC-GVSYIYKVKRL 341 (1103)
Q Consensus 318 IiTTR~~-~v~~~~-~~~~~~~l~~L 341 (1103)
|++|.+. .+.... .....+++.+.
T Consensus 143 il~~n~~~~il~tI~SRc~~i~f~~~ 168 (325)
T COG0470 143 ILITNDPSKILPTIRSRCQRIRFKPP 168 (325)
T ss_pred EEEcCChhhccchhhhcceeeecCCc
Confidence 8888744 333322 22345666663
No 239
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.20 E-value=0.069 Score=66.93 Aligned_cols=79 Identities=16% Similarity=0.233 Sum_probs=55.7
Q ss_pred CcchHHHHHHHHHHHHHhcccCCCCCC-----------CCCccccchhHHHHHHhhcc----cCCCeEEEEEeecCCChh
Q 044579 154 SRNDAELVEKIVEDISKKLEDMSESTD-----------LDGLVGLNTRIEEMKSLLCL----ESHDVRIVGIWGMGGIGK 218 (1103)
Q Consensus 154 ~~~e~~~i~~iv~~i~~~l~~~~~~~~-----------~~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGK 218 (1103)
..+|+.++....+-+.+-... ....+ ..+.+|.++-.+++.+++.. ......++.++|++|+||
T Consensus 284 ~~~e~~~~~~yl~~~~~~pw~-~~~~~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GK 362 (784)
T PRK10787 284 MSAEATVVRGYIDWMVQVPWN-ARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGK 362 (784)
T ss_pred CCchHHHHHHHHHHHHhCCCC-CCCcccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCH
Confidence 566788888877777664322 11111 24578999888888877762 122346899999999999
Q ss_pred HHHHHHHHHHHhccC
Q 044579 219 TTIASVVFHQISRHF 233 (1103)
Q Consensus 219 TtLA~~v~~~~~~~F 233 (1103)
||+|+.++..+...|
T Consensus 363 Ttl~~~ia~~l~~~~ 377 (784)
T PRK10787 363 TSLGQSIAKATGRKY 377 (784)
T ss_pred HHHHHHHHHHhCCCE
Confidence 999999998765444
No 240
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.20 E-value=0.0053 Score=61.06 Aligned_cols=102 Identities=17% Similarity=0.131 Sum_probs=58.9
Q ss_pred CceEEEEEcCCCCCCCCCccccccccccccccccccccccccc-cCCcceEecCCCCCCC--ccCCCCCCCCCccEEEec
Q 044579 574 EKLRYLHWHGYPLKTLPFDFELENLIELRLPYSKVEQIWEGKK-EASKLKSIDLCHSQHL--IRMPDLSEIPNLERTNFF 650 (1103)
Q Consensus 574 ~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~-~l~~L~~L~L~~~~~~--~~~p~l~~l~~L~~L~L~ 650 (1103)
+....++++.|.+..++..-.++.|.+|.|.+|+|+.+-..+. .+++|+.|.|.+|.+. .++..+..+|.|++|.+-
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred cccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 3555666777766666654466777777777777776655543 3456777777776532 233345666677777766
Q ss_pred CCCCCCcc---cccccCCCcccEEEccC
Q 044579 651 NCTNLVLV---PSSIQNFNNLSMLCFRG 675 (1103)
Q Consensus 651 ~~~~l~~~---~~~i~~l~~L~~L~L~~ 675 (1103)
+|+....- --.+..+++|+.|++.+
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhh
Confidence 65432211 01244555666665544
No 241
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.17 E-value=0.0054 Score=58.78 Aligned_cols=39 Identities=26% Similarity=0.365 Sum_probs=30.2
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHhcc-CCce-EEEEechh
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQISRH-FQGK-CFMANVRE 244 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~-~~~~~~~~ 244 (1103)
.-|+|.||+|+||||+++.+++.+++. |... +|...+++
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~ 46 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVRE 46 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeec
Confidence 458999999999999999999988766 6554 44444443
No 242
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.16 E-value=0.15 Score=59.07 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=25.5
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHHHhcc
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQISRH 232 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (1103)
...+|.++|.+|+||||+|..++..++.+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 46799999999999999999999877654
No 243
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.10 E-value=0.041 Score=67.78 Aligned_cols=129 Identities=17% Similarity=0.205 Sum_probs=71.1
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHHHHHHhhhCCCCccccccchHHHHHhhcCC
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRV 285 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k 285 (1103)
+-|.|+|++|.|||++|+.++.+....|- .+. ..+ +.. ...+.. .......+.......
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~f~---~is-~~~---------~~~----~~~g~~----~~~~~~~f~~a~~~~ 244 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVPFF---TIS-GSD---------FVE----MFVGVG----ASRVRDMFEQAKKAA 244 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCEE---EEe-hHH---------hHH----hhhccc----HHHHHHHHHHHHhcC
Confidence 34899999999999999999987654431 111 110 000 000100 000011222223456
Q ss_pred ceEEEEeCCCCCHh----------------HHHHHhCCCCccC--CCcEEEEEeCchhhHhh-----cCcceEEEccCCC
Q 044579 286 KVLIVLDDVNDEFT----------------QLESLAGGVDRFS--PGSRIVITTRDKQVLDK-----CGVSYIYKVKRLE 342 (1103)
Q Consensus 286 ~~LlVLDdv~~~~~----------------~l~~l~~~~~~~~--~gs~IIiTTR~~~v~~~-----~~~~~~~~l~~L~ 342 (1103)
+.+|++|+++ ... .+..+...++.+. .+.-+|.||...+.+.. -..+..+.++..+
T Consensus 245 P~IifIDEiD-~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd 323 (644)
T PRK10733 245 PCIIFIDEID-AVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPD 323 (644)
T ss_pred CcEEEehhHh-hhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCC
Confidence 7899999986 321 1233333333222 34455557766554321 1346788899999
Q ss_pred hhHHHHHHHHhhhc
Q 044579 343 HDNALELFCRKAIR 356 (1103)
Q Consensus 343 ~~ea~~Lf~~~a~~ 356 (1103)
.++-.+++..+...
T Consensus 324 ~~~R~~Il~~~~~~ 337 (644)
T PRK10733 324 VRGREQILKVHMRR 337 (644)
T ss_pred HHHHHHHHHHHhhc
Confidence 88888888877643
No 244
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.10 E-value=0.074 Score=53.14 Aligned_cols=138 Identities=15% Similarity=0.196 Sum_probs=70.9
Q ss_pred ccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhc--------------------cCCceEEEEechhh
Q 044579 186 GLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISR--------------------HFQGKCFMANVREK 245 (1103)
Q Consensus 186 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--------------------~F~~~~~~~~~~~~ 245 (1103)
|-+...+.|...+..+ .-...+.++|..|+||+|+|..+++.+-. ..+...++... +.
T Consensus 1 gq~~~~~~L~~~~~~~-~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~-~~ 78 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPD-KK 78 (162)
T ss_dssp S-HHHHHHHHHHHHCT-C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETT-TS
T ss_pred CcHHHHHHHHHHHHcC-CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecc-cc
Confidence 3445566666666432 22456889999999999999999986522 12223333210 00
Q ss_pred hcccChHHHHHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCC-CHhHHHHHhCCCCccCCCcEEEEEeCch
Q 044579 246 ANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVND-EFTQLESLAGGVDRFSPGSRIVITTRDK 324 (1103)
Q Consensus 246 ~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~-~~~~l~~l~~~~~~~~~gs~IIiTTR~~ 324 (1103)
.....+.++. ++...+.... ..+++=++|+||++. ..+...+|+..+.....++++|++|++.
T Consensus 79 ~~~i~i~~ir-~i~~~~~~~~---------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 79 KKSIKIDQIR-EIIEFLSLSP---------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp SSSBSHHHHH-HHHHHCTSS----------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred cchhhHHHHH-HHHHHHHHHH---------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECCh
Confidence 0011121111 2222211100 123456889999974 3455666666666567889999998876
Q ss_pred h-hHhhc-CcceEEEccCC
Q 044579 325 Q-VLDKC-GVSYIYKVKRL 341 (1103)
Q Consensus 325 ~-v~~~~-~~~~~~~l~~L 341 (1103)
. ++... .....+.+.++
T Consensus 143 ~~il~TI~SRc~~i~~~~l 161 (162)
T PF13177_consen 143 SKILPTIRSRCQVIRFRPL 161 (162)
T ss_dssp GGS-HHHHTTSEEEEE---
T ss_pred HHChHHHHhhceEEecCCC
Confidence 5 33322 33455666654
No 245
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.096 Score=61.67 Aligned_cols=161 Identities=16% Similarity=0.156 Sum_probs=80.6
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhh-hcccChHHHHHHHHHhhhCCCCccccccchHHHHHhhc
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREK-ANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQ 283 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~-~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 283 (1103)
...|.|.|..|+|||+||+++++.+...- .+++.-+... .....+..+++.+ .. .+...+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~--~~hv~~v~Cs~l~~~~~e~iQk~l-~~---------------vfse~~~ 492 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDL--IAHVEIVSCSTLDGSSLEKIQKFL-NN---------------VFSEALW 492 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhcccc--ceEEEEEechhccchhHHHHHHHH-HH---------------HHHHHHh
Confidence 35688999999999999999999876433 3333322111 1112233333322 11 3344556
Q ss_pred CCceEEEEeCCCC-------CHhHH----HHHhCC----CCc-cCCCcE--EEEEeCchhhHh-----hcCcceEEEccC
Q 044579 284 RVKVLIVLDDVND-------EFTQL----ESLAGG----VDR-FSPGSR--IVITTRDKQVLD-----KCGVSYIYKVKR 340 (1103)
Q Consensus 284 ~k~~LlVLDdv~~-------~~~~l----~~l~~~----~~~-~~~gs~--IIiTTR~~~v~~-----~~~~~~~~~l~~ 340 (1103)
..+-+|||||++. +..|+ +.+... ... ...+.+ +|-|.....-.. ..-......++.
T Consensus 493 ~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~a 572 (952)
T KOG0735|consen 493 YAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPA 572 (952)
T ss_pred hCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCC
Confidence 7799999999962 00111 111111 011 123333 344444332221 112345677888
Q ss_pred CChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCC-hhHHHHH
Q 044579 341 LEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGN-PLALEVL 385 (1103)
Q Consensus 341 L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~l 385 (1103)
+..++-.++++... ...... ...+...-+..+|+|. |.-+.++
T Consensus 573 p~~~~R~~IL~~~~-s~~~~~-~~~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 573 PAVTRRKEILTTIF-SKNLSD-ITMDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred cchhHHHHHHHHHH-Hhhhhh-hhhHHHHHHHHhcCCccchhHHHH
Confidence 88887777776543 222211 1122222366667663 4444443
No 246
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.06 E-value=0.03 Score=56.18 Aligned_cols=45 Identities=20% Similarity=0.257 Sum_probs=32.1
Q ss_pred ccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHH
Q 044579 184 LVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQ 228 (1103)
Q Consensus 184 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (1103)
+||.+..++++.+.+..-......|.|+|..|.||+.+|+.+.+.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 477888888877766633333356779999999999999999883
No 247
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.00 E-value=0.017 Score=56.69 Aligned_cols=35 Identities=20% Similarity=0.131 Sum_probs=27.2
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHhccCCceEEEE
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMA 240 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 240 (1103)
.+|-|++-.|-||||+|...+-+...+=..+.++.
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQ 37 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQ 37 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 46888888899999999999987666544555544
No 248
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.00 E-value=0.077 Score=63.81 Aligned_cols=49 Identities=31% Similarity=0.550 Sum_probs=38.5
Q ss_pred CCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHH
Q 044579 179 TDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 179 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
...++++|.+..++.+...+... ....|.|+|.+|+|||++|+.+++..
T Consensus 62 ~~f~~iiGqs~~i~~l~~al~~~--~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAALCGP--NPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34467999999999998776432 33467899999999999999998743
No 249
>PRK06696 uridine kinase; Validated
Probab=95.98 E-value=0.011 Score=62.79 Aligned_cols=46 Identities=24% Similarity=0.240 Sum_probs=33.5
Q ss_pred cchhHHHHHHhhcc-cCCCeEEEEEeecCCChhHHHHHHHHHHHhcc
Q 044579 187 LNTRIEEMKSLLCL-ESHDVRIVGIWGMGGIGKTTIASVVFHQISRH 232 (1103)
Q Consensus 187 r~~~~~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (1103)
|.+.+++|.+.+.. ......+|+|.|.+|+||||+|+++++.+...
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 34445555544432 34457899999999999999999999887544
No 250
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.95 E-value=0.0036 Score=65.01 Aligned_cols=37 Identities=32% Similarity=0.200 Sum_probs=18.4
Q ss_pred CCCCCCEEecCCC--cccccccccccCCCCCcEEeecCC
Q 044579 731 CLTNLKELYLSRC--STLNRLSTSICKLKSLHELILSDC 767 (1103)
Q Consensus 731 ~l~~L~~L~L~~~--~~~~~lp~~l~~l~~L~~L~L~~~ 767 (1103)
.|++|+.|.++.| +..+.++.....+++|++|++++|
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N 101 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN 101 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCC
Confidence 3555555555555 334444433344455555555554
No 251
>PHA00729 NTP-binding motif containing protein
Probab=95.95 E-value=0.022 Score=59.16 Aligned_cols=27 Identities=33% Similarity=0.315 Sum_probs=23.4
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHHHh
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
+...|.|.|.+|+||||||.++++++.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345789999999999999999998754
No 252
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.034 Score=59.25 Aligned_cols=36 Identities=17% Similarity=0.385 Sum_probs=28.6
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHH----hccCCceEEEE
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQI----SRHFQGKCFMA 240 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~----~~~F~~~~~~~ 240 (1103)
.|+|.++|++|.|||+|++++++++ ..+|.....+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE 216 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE 216 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE
Confidence 5899999999999999999999964 34555555443
No 253
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.93 E-value=0.0044 Score=60.32 Aligned_cols=22 Identities=36% Similarity=0.389 Sum_probs=20.7
Q ss_pred EEEeecCCChhHHHHHHHHHHH
Q 044579 208 VGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 208 v~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
|.|+|.+|+|||+||+.+++.+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999987
No 254
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.93 E-value=0.012 Score=59.92 Aligned_cols=36 Identities=25% Similarity=0.504 Sum_probs=31.5
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEE
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMA 240 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 240 (1103)
..+|.+.|+.|+||||+|+.++.++..++...+++.
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 458999999999999999999999887777777764
No 255
>PRK07667 uridine kinase; Provisional
Probab=95.92 E-value=0.015 Score=60.15 Aligned_cols=42 Identities=21% Similarity=0.328 Sum_probs=32.2
Q ss_pred HHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhcc
Q 044579 191 IEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRH 232 (1103)
Q Consensus 191 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (1103)
++.+.+.+....+...+|+|.|.+|.||||+|+.+...+...
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 344555555445556899999999999999999999877543
No 256
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.90 E-value=0.028 Score=56.08 Aligned_cols=34 Identities=24% Similarity=0.332 Sum_probs=27.2
Q ss_pred EEEEeecCCChhHHHHHHHHHHHhccCCceEEEE
Q 044579 207 IVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMA 240 (1103)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 240 (1103)
++.|+|.+|+||||+|..++.....+-..++|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3689999999999999999988766545556654
No 257
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.86 E-value=0.03 Score=59.61 Aligned_cols=49 Identities=20% Similarity=0.224 Sum_probs=38.5
Q ss_pred HHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEE
Q 044579 192 EEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMA 240 (1103)
Q Consensus 192 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 240 (1103)
..|.++|..+-..-.++.|+|.+|+|||++|.+++......-..++|+.
T Consensus 10 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 10 KMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4456666544455679999999999999999999987766666778876
No 258
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.17 Score=51.91 Aligned_cols=146 Identities=20% Similarity=0.379 Sum_probs=80.2
Q ss_pred ccchhHHHHHHhhcc-----------cCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHH
Q 044579 186 GLNTRIEEMKSLLCL-----------ESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHV 254 (1103)
Q Consensus 186 Gr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~ 254 (1103)
|.+..++++.+.+.. +-...+-|.++|++|.|||-||+++++.. .+.|+. ++. .
T Consensus 151 gLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht-----~c~fir-vsg-------s-- 215 (404)
T KOG0728|consen 151 GLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----DCTFIR-VSG-------S-- 215 (404)
T ss_pred cHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc-----ceEEEE-ech-------H--
Confidence 445566666655441 11235668899999999999999999753 233343 321 1
Q ss_pred HHHHHHhhhCCCCccccccchHHHHHhh----cCCceEEEEeCCCC------------CHhH---HHHHhCCCCcc--CC
Q 044579 255 RDEVISQVLGENLKIGTLIVPQNIKKRL----QRVKVLIVLDDVND------------EFTQ---LESLAGGVDRF--SP 313 (1103)
Q Consensus 255 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L----~~k~~LlVLDdv~~------------~~~~---l~~l~~~~~~~--~~ 313 (1103)
++.....++.. .++++.. .+.+-+|.+|.++. +.+. .-.++..++.| .+
T Consensus 216 --elvqk~igegs--------rmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatk 285 (404)
T KOG0728|consen 216 --ELVQKYIGEGS--------RMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATK 285 (404)
T ss_pred --HHHHHHhhhhH--------HHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccccc
Confidence 12222222111 0122111 34577888888762 1110 11233334333 34
Q ss_pred CcEEEEEeCchhhHh-----hcCcceEEEccCCChhHHHHHHHHhhhc
Q 044579 314 GSRIVITTRDKQVLD-----KCGVSYIYKVKRLEHDNALELFCRKAIR 356 (1103)
Q Consensus 314 gs~IIiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 356 (1103)
.-+||..|..-+++. .-..++.++.++-+++.-.+++.-+..+
T Consensus 286 nikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrk 333 (404)
T KOG0728|consen 286 NIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRK 333 (404)
T ss_pred ceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhh
Confidence 567887775444432 2345677888888888778887766533
No 259
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.84 E-value=0.001 Score=68.87 Aligned_cols=100 Identities=21% Similarity=0.216 Sum_probs=72.4
Q ss_pred hcCcccceEEEecCCCCCccccCcceecCCCcccCCCceEEEEEcCCCCCCCCCcccccccccccccccccccccc--cc
Q 044579 538 ANMSNLRLLKFYMPERGGVPIMSSKVHLDQGLEDLPEKLRYLHWHGYPLKTLPFDFELENLIELRLPYSKVEQIWE--GK 615 (1103)
Q Consensus 538 ~~l~~Lr~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~--~~ 615 (1103)
+.+.+.+.|++.++.+.++.. ...+| .|++|.|+-|.|+++.+...+++|++|.|..|.|..+-+ -+
T Consensus 16 sdl~~vkKLNcwg~~L~DIsi----------c~kMp-~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YL 84 (388)
T KOG2123|consen 16 SDLENVKKLNCWGCGLDDISI----------CEKMP-LLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYL 84 (388)
T ss_pred hHHHHhhhhcccCCCccHHHH----------HHhcc-cceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 345667788888876654321 12333 789999999999999888889999999999999987753 46
Q ss_pred ccCCcceEecCCCCCCCccCCC------CCCCCCccEEE
Q 044579 616 KEASKLKSIDLCHSQHLIRMPD------LSEIPNLERTN 648 (1103)
Q Consensus 616 ~~l~~L~~L~L~~~~~~~~~p~------l~~l~~L~~L~ 648 (1103)
+++++|+.|.|..|.-...-+. +..||||+.|+
T Consensus 85 knlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 85 KNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 8888889888888875544432 44566666665
No 260
>PRK14974 cell division protein FtsY; Provisional
Probab=95.82 E-value=0.091 Score=58.72 Aligned_cols=29 Identities=21% Similarity=0.321 Sum_probs=25.0
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHHHhcc
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQISRH 232 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (1103)
...+++++|++|+||||++..++..+..+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 36899999999999999999998876554
No 261
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.07 Score=62.58 Aligned_cols=152 Identities=19% Similarity=0.242 Sum_probs=84.1
Q ss_pred ccchhHHHHHHhhc-----------ccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHH
Q 044579 186 GLNTRIEEMKSLLC-----------LESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHV 254 (1103)
Q Consensus 186 Gr~~~~~~l~~~L~-----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~ 254 (1103)
|.++-..+|.+... .+-...+-|..+|++|.|||++|+++++.-...|-.+ .
T Consensus 438 GlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsv---k-------------- 500 (693)
T KOG0730|consen 438 GLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSV---K-------------- 500 (693)
T ss_pred CHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeec---c--------------
Confidence 46655556654332 2224567789999999999999999999876666322 0
Q ss_pred HHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCC------------CHhHHHHHhCCCCccCCCcEEEE---
Q 044579 255 RDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVND------------EFTQLESLAGGVDRFSPGSRIVI--- 319 (1103)
Q Consensus 255 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~------------~~~~l~~l~~~~~~~~~gs~IIi--- 319 (1103)
..++++...++.. .......++.-+-.+.++.||.+|. ....+..|+..++.......|+|
T Consensus 501 gpEL~sk~vGeSE----r~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAA 576 (693)
T KOG0730|consen 501 GPELFSKYVGESE----RAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAA 576 (693)
T ss_pred CHHHHHHhcCchH----HHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEec
Confidence 0122222222110 0011122222233468888888762 01123444455554444444444
Q ss_pred EeCchhhHhh----cCcceEEEccCCChhHHHHHHHHhhhccC
Q 044579 320 TTRDKQVLDK----CGVSYIYKVKRLEHDNALELFCRKAIRQN 358 (1103)
Q Consensus 320 TTR~~~v~~~----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 358 (1103)
|-|...+-.. -..+..+.|+.-+.+.-.++|..++-+..
T Consensus 577 TNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp 619 (693)
T KOG0730|consen 577 TNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMP 619 (693)
T ss_pred cCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCC
Confidence 2343322211 13567888888888888999999885543
No 262
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=95.81 E-value=0.053 Score=63.41 Aligned_cols=187 Identities=15% Similarity=0.173 Sum_probs=105.1
Q ss_pred CCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhc----cCCc--eEEEEechhhhcccCh
Q 044579 178 STDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISR----HFQG--KCFMANVREKANKMGV 251 (1103)
Q Consensus 178 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~----~F~~--~~~~~~~~~~~~~~~~ 251 (1103)
|...+++||-+.-.+.|...+..+. -..--...|.-|+||||+||.++..+-. ..+. .|..+ ++......+
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C--k~I~~g~~~ 88 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC--KEINEGSLI 88 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhh--HhhhcCCcc
Confidence 4455678999999999998886433 2345668999999999999999985411 1111 11110 000000000
Q ss_pred HHHHHHHHHhhhCCCCccccccchHHHHHhh-----cCCceEEEEeCCCC-CHhHHHHHhCCCCccCCCcEEEEEeCchh
Q 044579 252 IHVRDEVISQVLGENLKIGTLIVPQNIKKRL-----QRVKVLIVLDDVND-EFTQLESLAGGVDRFSPGSRIVITTRDKQ 325 (1103)
Q Consensus 252 ~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVLDdv~~-~~~~l~~l~~~~~~~~~gs~IIiTTR~~~ 325 (1103)
.-+.-+.++ ....+..+.|.+.. +++.=+.|+|.|.. ....+.+|+..+....+....|..|.+.+
T Consensus 89 DviEiDaAS--------n~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~ 160 (515)
T COG2812 89 DVIEIDAAS--------NTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQ 160 (515)
T ss_pred cchhhhhhh--------ccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcC
Confidence 000000000 00111112333333 34455889999973 24457888887776666666666666543
Q ss_pred -hHh-hcCcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCC
Q 044579 326 -VLD-KCGVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKG 377 (1103)
Q Consensus 326 -v~~-~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G 377 (1103)
+.. .....+.|..+.++.++-...+...+-...-.. ..+....|++..+|
T Consensus 161 Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~--e~~aL~~ia~~a~G 212 (515)
T COG2812 161 KIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINI--EEDALSLIARAAEG 212 (515)
T ss_pred cCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCcc--CHHHHHHHHHHcCC
Confidence 322 234457899999999988888877663333222 22444555555555
No 263
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=0.1 Score=58.78 Aligned_cols=150 Identities=16% Similarity=0.170 Sum_probs=77.4
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHHHHHHhhhCCCCccccccchHHHHHhhcC
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQR 284 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~ 284 (1103)
-|=-.++|++|.|||++..++++.+. |+ ++--.+.++..... ++.++.. ..
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L~--yd--IydLeLt~v~~n~d----Lr~LL~~---------------------t~ 285 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYLN--YD--IYDLELTEVKLDSD----LRHLLLA---------------------TP 285 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhcC--Cc--eEEeeeccccCcHH----HHHHHHh---------------------CC
Confidence 45677999999999999999998652 32 33333322221111 1222211 23
Q ss_pred CceEEEEeCCCCCHhH-------------------HHHHhCCCC--ccCC-CcEE-EEEeCchhhH-----hhcCcceEE
Q 044579 285 VKVLIVLDDVNDEFTQ-------------------LESLAGGVD--RFSP-GSRI-VITTRDKQVL-----DKCGVSYIY 336 (1103)
Q Consensus 285 k~~LlVLDdv~~~~~~-------------------l~~l~~~~~--~~~~-gs~I-IiTTR~~~v~-----~~~~~~~~~ 336 (1103)
.+-+||+.|+|...+. +.-|+..++ |... +-|| |.||-..+-+ ..-..+..+
T Consensus 286 ~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI 365 (457)
T KOG0743|consen 286 NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHI 365 (457)
T ss_pred CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEE
Confidence 4667777777632110 111111111 1112 2355 5566644432 222455677
Q ss_pred EccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhHHHHHHhh
Q 044579 337 KVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLALEVLGSS 388 (1103)
Q Consensus 337 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~lg~~ 388 (1103)
.+.-=+.+.-..|+..+..... +. .++.+|.+...|.-+.=..++..
T Consensus 366 ~mgyCtf~~fK~La~nYL~~~~-~h----~L~~eie~l~~~~~~tPA~V~e~ 412 (457)
T KOG0743|consen 366 YMGYCTFEAFKTLASNYLGIEE-DH----RLFDEIERLIEETEVTPAQVAEE 412 (457)
T ss_pred EcCCCCHHHHHHHHHHhcCCCC-Cc----chhHHHHHHhhcCccCHHHHHHH
Confidence 8888888888888887763322 22 34455555555554443444433
No 264
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.74 E-value=0.0012 Score=79.36 Aligned_cols=34 Identities=21% Similarity=0.243 Sum_probs=18.5
Q ss_pred CCcceEecCCCCCCCcc---CCCCCCCCCccEEEecC
Q 044579 618 ASKLKSIDLCHSQHLIR---MPDLSEIPNLERTNFFN 651 (1103)
Q Consensus 618 l~~L~~L~L~~~~~~~~---~p~l~~l~~L~~L~L~~ 651 (1103)
.++|+.|.+..+..... .+....+++|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 45666666666544433 12345556666666665
No 265
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.73 E-value=0.029 Score=69.56 Aligned_cols=49 Identities=18% Similarity=0.246 Sum_probs=38.5
Q ss_pred CCccccchhHHHHHHhhccc-------CCCeEEEEEeecCCChhHHHHHHHHHHHh
Q 044579 182 DGLVGLNTRIEEMKSLLCLE-------SHDVRIVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 182 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
..++|.+.-++.|...+... ......+.++|+.|+|||++|+.++..+.
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999888777621 12245788999999999999999998773
No 266
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.70 E-value=0.017 Score=63.97 Aligned_cols=36 Identities=14% Similarity=0.324 Sum_probs=29.1
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEE
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMA 240 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 240 (1103)
.+-+.|+|..|+|||.||.++++.+..+-..+.|+.
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~ 191 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH 191 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 457899999999999999999998765544455654
No 267
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.70 E-value=0.048 Score=59.43 Aligned_cols=37 Identities=16% Similarity=0.319 Sum_probs=28.5
Q ss_pred CCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEE
Q 044579 203 HDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFM 239 (1103)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 239 (1103)
...++++++|++|+||||++..++..++..-..+.++
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li 106 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLA 106 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 3468999999999999999999998776553334444
No 268
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.70 E-value=0.027 Score=55.72 Aligned_cols=89 Identities=22% Similarity=0.282 Sum_probs=45.8
Q ss_pred EeecCCChhHHHHHHHHHHHhccCCceEEEE---echhhhcccChHHHHHHHHHhhhCCCCccccccchHHHHHhhcC--
Q 044579 210 IWGMGGIGKTTIASVVFHQISRHFQGKCFMA---NVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQR-- 284 (1103)
Q Consensus 210 I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~---~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~-- 284 (1103)
|.|++|+||||+|+.++.++ .| ..+. -+++.....+ ... ..+.+........++......++.++..
T Consensus 1 i~G~PgsGK~t~~~~la~~~--~~---~~is~~~llr~~~~~~s--~~g-~~i~~~l~~g~~vp~~~v~~ll~~~l~~~~ 72 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY--GL---VHISVGDLLREEIKSDS--ELG-KQIQEYLDNGELVPDELVIELLKERLEQPP 72 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH--TS---EEEEHHHHHHHHHHTTS--HHH-HHHHHHHHTTSS--HHHHHHHHHHHHHSGG
T ss_pred CcCCCCCChHHHHHHHHHhc--Cc---ceechHHHHHHHHhhhh--HHH-HHHHHHHHhhccchHHHHHHHHHHHHhhhc
Confidence 68999999999999999875 23 2222 1111111111 111 1122222222222222223355555532
Q ss_pred CceEEEEeCCCCCHhHHHHHhC
Q 044579 285 VKVLIVLDDVNDEFTQLESLAG 306 (1103)
Q Consensus 285 k~~LlVLDdv~~~~~~l~~l~~ 306 (1103)
..--+|||+.-.+..|.+.+..
T Consensus 73 ~~~g~ildGfPrt~~Qa~~l~~ 94 (151)
T PF00406_consen 73 CNRGFILDGFPRTLEQAEALEE 94 (151)
T ss_dssp TTTEEEEESB-SSHHHHHHHHH
T ss_pred ccceeeeeeccccHHHHHHHHH
Confidence 2456889999777888777654
No 269
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.68 E-value=0.031 Score=58.73 Aligned_cols=44 Identities=25% Similarity=0.298 Sum_probs=35.0
Q ss_pred hhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEE
Q 044579 197 LLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMA 240 (1103)
Q Consensus 197 ~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 240 (1103)
+|..+-..-+++.|+|.+|+|||++|.+++......-..++|+.
T Consensus 4 ~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 4 LLGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred hhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 34434445689999999999999999999987766666788887
No 270
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=0.11 Score=62.44 Aligned_cols=154 Identities=21% Similarity=0.240 Sum_probs=85.8
Q ss_pred CCccccchhHHHHHHhhc---c--------cCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccC
Q 044579 182 DGLVGLNTRIEEMKSLLC---L--------ESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMG 250 (1103)
Q Consensus 182 ~~~vGr~~~~~~l~~~L~---~--------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 250 (1103)
....|.+...+.+.+... . +-...+.+.++|++|.|||.||++++......|-.+..-
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~----------- 310 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS----------- 310 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH-----------
Confidence 445555555555544332 0 223456899999999999999999999665555322110
Q ss_pred hHHHHHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCC-------C-----HhHHHHHhCCCCccCC--CcE
Q 044579 251 VIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVND-------E-----FTQLESLAGGVDRFSP--GSR 316 (1103)
Q Consensus 251 ~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~-------~-----~~~l~~l~~~~~~~~~--gs~ 316 (1103)
+++....++. ............+..+..|.+|.++. . ......+...++.... +..
T Consensus 311 ------~l~sk~vGes----ek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~ 380 (494)
T COG0464 311 ------ELLSKWVGES----EKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVL 380 (494)
T ss_pred ------HHhccccchH----HHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceE
Confidence 1122111111 00011123333357789999999852 0 0123333333332223 333
Q ss_pred EEEEeCchhhHhh-----cCcceEEEccCCChhHHHHHHHHhhhc
Q 044579 317 IVITTRDKQVLDK-----CGVSYIYKVKRLEHDNALELFCRKAIR 356 (1103)
Q Consensus 317 IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 356 (1103)
||-||-.+..... ...+..+.++.-+.++..+.|..+.-.
T Consensus 381 vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~ 425 (494)
T COG0464 381 VIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRD 425 (494)
T ss_pred EEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcc
Confidence 4555544433321 144678899999999999999988743
No 271
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.58 E-value=0.045 Score=56.08 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.9
Q ss_pred EEEEeecCCChhHHHHHHHHHHH
Q 044579 207 IVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
+|.|.|++|+||||+|+.++.++
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999998865
No 272
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.53 E-value=0.052 Score=57.40 Aligned_cols=50 Identities=18% Similarity=0.230 Sum_probs=37.8
Q ss_pred HHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEE
Q 044579 191 IEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMA 240 (1103)
Q Consensus 191 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 240 (1103)
+..|..+|..+-..-+++.|.|.+|+||||+|.+++.....+-..++|+.
T Consensus 5 i~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 5 CKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred hhHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 34566666544455689999999999999999999987765555567775
No 273
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.51 E-value=0.24 Score=60.06 Aligned_cols=50 Identities=20% Similarity=0.285 Sum_probs=39.9
Q ss_pred CCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHH
Q 044579 180 DLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 180 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
....++|....++++.+.+..-......|.|+|..|+|||++|+.+.+.-
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 45689999999999887776333334467899999999999999998753
No 274
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.49 E-value=0.041 Score=62.58 Aligned_cols=50 Identities=24% Similarity=0.249 Sum_probs=37.6
Q ss_pred HHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEE
Q 044579 191 IEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMA 240 (1103)
Q Consensus 191 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 240 (1103)
+.++.+.|..+-..-.++.|.|.+|+|||||+.+++......-..++|+.
T Consensus 68 i~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 68 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred CHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 45566666544344579999999999999999999988766555666765
No 275
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=95.47 E-value=0.026 Score=64.61 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=23.7
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHHH
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
...+|.+.|.+|+||||+|.+++.+.
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~l 279 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRL 279 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999999999875
No 276
>PRK04296 thymidine kinase; Provisional
Probab=95.46 E-value=0.029 Score=57.80 Aligned_cols=110 Identities=14% Similarity=0.065 Sum_probs=58.4
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHHHHHHhhhCCCCccccccchH----HHHHh
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQ----NIKKR 281 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~----~l~~~ 281 (1103)
.++.|+|..|.||||+|..++.+...+...++++... .....+ ...+.+++. ............ .+++
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~--~d~~~~----~~~i~~~lg-~~~~~~~~~~~~~~~~~~~~- 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPA--IDDRYG----EGKVVSRIG-LSREAIPVSSDTDIFELIEE- 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEecc--cccccc----CCcEecCCC-CcccceEeCChHHHHHHHHh-
Confidence 4788999999999999999999876665444444210 000111 111222221 110000001111 2222
Q ss_pred hcCCceEEEEeCCCC-CHhHHHHHhCCCCccCCCcEEEEEeCchh
Q 044579 282 LQRVKVLIVLDDVND-EFTQLESLAGGVDRFSPGSRIVITTRDKQ 325 (1103)
Q Consensus 282 L~~k~~LlVLDdv~~-~~~~l~~l~~~~~~~~~gs~IIiTTR~~~ 325 (1103)
..++.-+||+|.+.. +.+++..+...+ ...|..||+|.++..
T Consensus 75 ~~~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 75 EGEKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred hCCCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 223456899999862 134344443332 146889999999853
No 277
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.42 E-value=0.014 Score=56.79 Aligned_cols=45 Identities=22% Similarity=0.240 Sum_probs=31.8
Q ss_pred cccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHH
Q 044579 185 VGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 185 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
||....++++.+.+..-......|.|+|..|+||+++|+.++..-
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 566777777776665333344568899999999999999888743
No 278
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.42 E-value=0.032 Score=60.07 Aligned_cols=37 Identities=19% Similarity=0.236 Sum_probs=28.9
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEE
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMA 240 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 240 (1103)
...-+.++|.+|+|||.||.++.+++...--.+.|+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~ 140 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT 140 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEE
Confidence 3456899999999999999999999884334455554
No 279
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.40 E-value=0.041 Score=53.80 Aligned_cols=104 Identities=16% Similarity=0.279 Sum_probs=56.5
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHHHHHHhhhCCCCccccccchH-HHHHhhc
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQ-NIKKRLQ 283 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~-~l~~~L~ 283 (1103)
-.+++|.|..|.|||||++.++.... ...+.+++.......--+. .+.....+ .+-+.+.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~~~~~i~~~~~------------------lS~G~~~rv~laral~ 86 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELE-PDEGIVTWGSTVKIGYFEQ------------------LSGGEKMRLALAKLLL 86 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCC-CCceEEEECCeEEEEEEcc------------------CCHHHHHHHHHHHHHh
Confidence 35899999999999999999886432 2345555532100000000 11111112 5566667
Q ss_pred CCceEEEEeCCCCC--HhHHHHHhCCCCccCCCcEEEEEeCchhhHhh
Q 044579 284 RVKVLIVLDDVNDE--FTQLESLAGGVDRFSPGSRIVITTRDKQVLDK 329 (1103)
Q Consensus 284 ~k~~LlVLDdv~~~--~~~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~ 329 (1103)
.++-++++|+.... ....+.+...+... +..||++|.+.+....
T Consensus 87 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 87 ENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 77889999987422 22222222222111 3478888887665533
No 280
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.39 E-value=0.14 Score=57.34 Aligned_cols=85 Identities=15% Similarity=0.255 Sum_probs=48.6
Q ss_pred eEEEEeCCCC-CHhHHHHHhCCCCccCCCcEEEEEeCchh-hHhhc-CcceEEEccCCChhHHHHHHHHhhhccCCCChh
Q 044579 287 VLIVLDDVND-EFTQLESLAGGVDRFSPGSRIVITTRDKQ-VLDKC-GVSYIYKVKRLEHDNALELFCRKAIRQNSRSQD 363 (1103)
Q Consensus 287 ~LlVLDdv~~-~~~~l~~l~~~~~~~~~gs~IIiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~ 363 (1103)
=++|+|+++. +......+...+.....+..+|++|.+.. +.... .....+.+.+++.+++.+.+.... ... .
T Consensus 115 kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~~~-~ 189 (325)
T PRK08699 115 RVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG----VAE-P 189 (325)
T ss_pred eEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC----CCc-H
Confidence 3445688762 23334444444333345676777777654 33332 234678899999999998886542 111 1
Q ss_pred HHHHHHHHHHHhCCChhH
Q 044579 364 LLELSKEIVGYAKGNPLA 381 (1103)
Q Consensus 364 ~~~~~~~i~~~~~G~PLa 381 (1103)
...+..++|-|+.
T Consensus 190 -----~~~l~~~~g~p~~ 202 (325)
T PRK08699 190 -----EERLAFHSGAPLF 202 (325)
T ss_pred -----HHHHHHhCCChhh
Confidence 1123568898864
No 281
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.37 E-value=0.062 Score=57.19 Aligned_cols=49 Identities=20% Similarity=0.169 Sum_probs=36.6
Q ss_pred HHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccC------CceEEEE
Q 044579 192 EEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHF------QGKCFMA 240 (1103)
Q Consensus 192 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~ 240 (1103)
..|.++|..+-..-.++.|+|.+|+|||++|..++....... ..++|+.
T Consensus 6 ~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 6 KALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred HHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 445556654445567999999999999999999987665444 5567776
No 282
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=0.071 Score=61.64 Aligned_cols=130 Identities=18% Similarity=0.296 Sum_probs=78.1
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHHHHHHhhhCCCCccccccchHHHHHhhcC
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQR 284 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~ 284 (1103)
..=|.+||++|.|||-||++|++.-...|- . +. + -+++....|+... ...+...+.-..
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NFi-----s-VK------G-----PELlNkYVGESEr----AVR~vFqRAR~s 603 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANFI-----S-VK------G-----PELLNKYVGESER----AVRQVFQRARAS 603 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCceE-----e-ec------C-----HHHHHHHhhhHHH----HHHHHHHHhhcC
Confidence 345889999999999999999998776662 2 11 1 1333333332110 111122333346
Q ss_pred CceEEEEeCCCC------------CHhHHHHHhCCCCcc--CCCcEEEEEeCchhhHh-----hcCcceEEEccCCChhH
Q 044579 285 VKVLIVLDDVND------------EFTQLESLAGGVDRF--SPGSRIVITTRDKQVLD-----KCGVSYIYKVKRLEHDN 345 (1103)
Q Consensus 285 k~~LlVLDdv~~------------~~~~l~~l~~~~~~~--~~gs~IIiTTR~~~v~~-----~~~~~~~~~l~~L~~~e 345 (1103)
.+++|.+|.+|. ....+..|+..++.. ..|.-||-.|-.+++.. --..+..+-|+.-+.+|
T Consensus 604 aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~e 683 (802)
T KOG0733|consen 604 APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEE 683 (802)
T ss_pred CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHH
Confidence 689999999862 011234454444432 24556666665444322 22446778888889999
Q ss_pred HHHHHHHhhh
Q 044579 346 ALELFCRKAI 355 (1103)
Q Consensus 346 a~~Lf~~~a~ 355 (1103)
-.+++....-
T Consensus 684 R~~ILK~~tk 693 (802)
T KOG0733|consen 684 RVAILKTITK 693 (802)
T ss_pred HHHHHHHHhc
Confidence 9999988774
No 283
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.32 E-value=0.035 Score=57.27 Aligned_cols=35 Identities=17% Similarity=0.347 Sum_probs=27.0
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHhccCCceEEEE
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMA 240 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 240 (1103)
+++.++|+.|+||||.+.+++.+.+.+-..+..+.
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis 36 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALIS 36 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeec
Confidence 68999999999999999999987766633344443
No 284
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.29 E-value=0.3 Score=56.59 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=23.9
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHHHh
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
...++.++|.+|+||||.|..++..+.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 367999999999999999999998764
No 285
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.27 E-value=0.068 Score=54.08 Aligned_cols=124 Identities=15% Similarity=0.238 Sum_probs=63.9
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHHHHHHhhhCCCCc----------cccccc
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRDEVISQVLGENLK----------IGTLIV 274 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~----------~~~~~~ 274 (1103)
-.+++|.|..|.|||||.+.++-... ...+.+++.... .. ....... +..+.-+ .+... .+..+.
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~-~~~G~i~~~g~~-~~-~~~~~~~-~~~i~~~-~~~~~~~~~t~~e~lLS~G~~ 102 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYD-PTSGEILIDGVD-LR-DLDLESL-RKNIAYV-PQDPFLFSGTIRENILSGGQR 102 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC-CCCCEEEECCEE-hh-hcCHHHH-HhhEEEE-cCCchhccchHHHHhhCHHHH
Confidence 35899999999999999999987543 334555553210 00 0000000 0000000 00000 000111
Q ss_pred hH-HHHHhhcCCceEEEEeCCCCCH-----hHHHHHhCCCCccCCCcEEEEEeCchhhHhhcCcceEEEc
Q 044579 275 PQ-NIKKRLQRVKVLIVLDDVNDEF-----TQLESLAGGVDRFSPGSRIVITTRDKQVLDKCGVSYIYKV 338 (1103)
Q Consensus 275 ~~-~l~~~L~~k~~LlVLDdv~~~~-----~~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~~l 338 (1103)
.+ .+.+.+..++-+++||+-.... ..+..+...+ ..+..||++|.+...... .++++.+
T Consensus 103 ~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~---~~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 103 QRIAIARALLRDPPILILDEATSALDPETEALILEALRAL---AKGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred HHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHh---cCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 11 4566677788899999874222 2222333222 235778889988876643 4555544
No 286
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.22 E-value=0.11 Score=52.98 Aligned_cols=125 Identities=14% Similarity=0.166 Sum_probs=63.7
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHHHHHHhh--hCCCCc----------cccc
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRDEVISQV--LGENLK----------IGTL 272 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ll~~l--~~~~~~----------~~~~ 272 (1103)
-.+++|.|..|.|||||++.++-... ...+.+++... .+.......-..+ ..+... ....
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~-------~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~L 99 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLK-PQQGEITLDGV-------PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRF 99 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC-CCCCEEEECCE-------EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccC
Confidence 35899999999999999999986432 23444554321 0000000000000 000000 1111
Q ss_pred cch---H-HHHHhhcCCceEEEEeCCCCCHh--HHHHHhCCCCccCCCcEEEEEeCchhhHhhcCcceEEEcc
Q 044579 273 IVP---Q-NIKKRLQRVKVLIVLDDVNDEFT--QLESLAGGVDRFSPGSRIVITTRDKQVLDKCGVSYIYKVK 339 (1103)
Q Consensus 273 ~~~---~-~l~~~L~~k~~LlVLDdv~~~~~--~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~~l~ 339 (1103)
..+ + .+.+.+..++=++++|+.....+ ..+.+...+.....+..||++|.+...... .++++.+.
T Consensus 100 S~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l~ 170 (178)
T cd03247 100 SGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH--MDKILFLE 170 (178)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh--CCEEEEEE
Confidence 112 1 55666677888999998743222 222222221111246788899988876642 45555543
No 287
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.20 E-value=0.076 Score=54.96 Aligned_cols=46 Identities=20% Similarity=0.235 Sum_probs=30.9
Q ss_pred HHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEE
Q 044579 191 IEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFM 239 (1103)
Q Consensus 191 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 239 (1103)
.+.+...+. ++-+++.|.|.+|.||||+++.+...+...-..++++
T Consensus 7 ~~a~~~~l~---~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~ 52 (196)
T PF13604_consen 7 REAVRAILT---SGDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGL 52 (196)
T ss_dssp HHHHHHHHH---CTCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEE
T ss_pred HHHHHHHHh---cCCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 344555554 2336888999999999999999888766653333443
No 288
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.20 E-value=0.03 Score=54.78 Aligned_cols=35 Identities=20% Similarity=0.258 Sum_probs=29.7
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHhccCCceEEEE
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMA 240 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 240 (1103)
.+|-|.|.+|.||||||+++.+++...-..+.++.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 58899999999999999999999888766666664
No 289
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.19 E-value=0.016 Score=55.27 Aligned_cols=22 Identities=45% Similarity=0.702 Sum_probs=20.5
Q ss_pred EEEeecCCChhHHHHHHHHHHH
Q 044579 208 VGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 208 v~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
|+|.|.+|+||||+|+++..+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999885
No 290
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.18 E-value=0.14 Score=62.44 Aligned_cols=156 Identities=15% Similarity=0.161 Sum_probs=84.5
Q ss_pred CCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhcc-CC-----ceEEEEechhhhcccChHH
Q 044579 180 DLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRH-FQ-----GKCFMANVREKANKMGVIH 253 (1103)
Q Consensus 180 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~-----~~~~~~~~~~~~~~~~~~~ 253 (1103)
..+.++||+++++++.+.|.....+. -.++|.+|+|||++|.-++.++... -+ ..++--++...
T Consensus 168 klDPvIGRd~EI~r~iqIL~RR~KNN--PvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~L-------- 237 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSRRTKNN--PVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSL-------- 237 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhccCCCC--CeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHH--------
Confidence 45678999999999999998544333 2468999999999999999986432 11 12222222111
Q ss_pred HHHHHHHhhhCCCCccccccchHH-HHHhhcCCceEEEEeCCCC------C----HhHHHHHhCCCCccCCCcEEEEEeC
Q 044579 254 VRDEVISQVLGENLKIGTLIVPQN-IKKRLQRVKVLIVLDDVND------E----FTQLESLAGGVDRFSPGSRIVITTR 322 (1103)
Q Consensus 254 ~~~~ll~~l~~~~~~~~~~~~~~~-l~~~L~~k~~LlVLDdv~~------~----~~~l~~l~~~~~~~~~gs~IIiTTR 322 (1103)
..+....-.-.+..+. +++.-+.++++|++|.+.. . .+.-.-|.+.+. .|.--.|=.||=
T Consensus 238 --------vAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLA-RGeL~~IGATT~ 308 (786)
T COG0542 238 --------VAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALA-RGELRCIGATTL 308 (786)
T ss_pred --------hccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHh-cCCeEEEEeccH
Confidence 1111111111111122 2222234489999999852 0 112222222222 122223444554
Q ss_pred chhh--Hh----hcCcceEEEccCCChhHHHHHHHHhh
Q 044579 323 DKQV--LD----KCGVSYIYKVKRLEHDNALELFCRKA 354 (1103)
Q Consensus 323 ~~~v--~~----~~~~~~~~~l~~L~~~ea~~Lf~~~a 354 (1103)
++-- .. --...+.+.|...+.+++.+.+....
T Consensus 309 ~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 309 DEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 3311 10 11334678899999999999987543
No 291
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.18 E-value=0.00068 Score=70.10 Aligned_cols=97 Identities=16% Similarity=0.151 Sum_probs=74.6
Q ss_pred ceEEEEEcCCCCCCCCCccccccccccccccccccccccccccCCcceEecCCCCCCC--ccCCCCCCCCCccEEEecCC
Q 044579 575 KLRYLHWHGYPLKTLPFDFELENLIELRLPYSKVEQIWEGKKEASKLKSIDLCHSQHL--IRMPDLSEIPNLERTNFFNC 652 (1103)
Q Consensus 575 ~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~--~~~p~l~~l~~L~~L~L~~~ 652 (1103)
+.+.|+.-||.+..+.-...++.|++|.|+-|+|+++ ..+..+++|+.|.|..|.+. .++.-+.++|+|+.|.|..|
T Consensus 20 ~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred HhhhhcccCCCccHHHHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence 5677888999999888777899999999999999988 45778899999999998742 12223678888888888888
Q ss_pred CCCCcccc-----cccCCCcccEEE
Q 044579 653 TNLVLVPS-----SIQNFNNLSMLC 672 (1103)
Q Consensus 653 ~~l~~~~~-----~i~~l~~L~~L~ 672 (1103)
+....-+. .+.-|++|+.|+
T Consensus 99 PCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 99 PCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred CcccccchhHHHHHHHHcccchhcc
Confidence 76665443 355667777764
No 292
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.15 E-value=0.047 Score=61.89 Aligned_cols=107 Identities=16% Similarity=0.223 Sum_probs=60.5
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHhccCCceEEEE-echhhhcccChHHHHHHHHHhhhCCCCccccccchHHHHHhhcC
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMA-NVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQR 284 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~-~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~ 284 (1103)
..+.|.|..|.||||+++.+...+......+++.. +..+. ........+...........-...++..|+.
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~--------~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~ 194 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEY--------VHRNKRSLINQREVGLDTLSFANALRAALRE 194 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhh--------hccCccceEEccccCCCCcCHHHHHHHhhcc
Confidence 58999999999999999999987766555555442 11111 0000000000011111111223378888889
Q ss_pred CceEEEEeCCCCCHhHHHHHhCCCCccCCCcEEEEEeCch
Q 044579 285 VKVLIVLDDVNDEFTQLESLAGGVDRFSPGSRIVITTRDK 324 (1103)
Q Consensus 285 k~~LlVLDdv~~~~~~l~~l~~~~~~~~~gs~IIiTTR~~ 324 (1103)
.+=.|++|.+. +.+........ ...|..|+.|.-..
T Consensus 195 ~pd~i~vgEir-d~~~~~~~l~a---a~tGh~v~~T~Ha~ 230 (343)
T TIGR01420 195 DPDVILIGEMR-DLETVELALTA---AETGHLVFGTLHTN 230 (343)
T ss_pred CCCEEEEeCCC-CHHHHHHHHHH---HHcCCcEEEEEcCC
Confidence 99999999997 55554432221 13455556555544
No 293
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.11 E-value=0.088 Score=53.75 Aligned_cols=123 Identities=17% Similarity=0.228 Sum_probs=62.9
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEec--hhhhcc--cChHHHHHHHHHhhhCCC---CccccccchH-
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANV--REKANK--MGVIHVRDEVISQVLGEN---LKIGTLIVPQ- 276 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~--~~~~~~--~~~~~~~~~ll~~l~~~~---~~~~~~~~~~- 276 (1103)
-.+++|.|..|.|||||++.++-.. ....+.+++... ...... ........+++..+.-.. ........++
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~-~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~ 103 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLL-KPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGER 103 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHH
Confidence 3589999999999999999988643 234555555321 110000 000011111233221110 1111122222
Q ss_pred ---HHHHhhcCCceEEEEeCCCCC--HhHHHHHhCCCCcc-CC-CcEEEEEeCchhhHh
Q 044579 277 ---NIKKRLQRVKVLIVLDDVNDE--FTQLESLAGGVDRF-SP-GSRIVITTRDKQVLD 328 (1103)
Q Consensus 277 ---~l~~~L~~k~~LlVLDdv~~~--~~~l~~l~~~~~~~-~~-gs~IIiTTR~~~v~~ 328 (1103)
.+.+.+...+-++++|+.-.. ....+.+...+... .. +..||++|.+.....
T Consensus 104 qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~ 162 (180)
T cd03214 104 QRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAA 162 (180)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 566667788899999987422 22222222222211 22 678888888876543
No 294
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=95.11 E-value=0.086 Score=62.52 Aligned_cols=158 Identities=20% Similarity=0.286 Sum_probs=87.8
Q ss_pred CCccccchhHHHHHHhhcc----cCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHHH
Q 044579 182 DGLVGLNTRIEEMKSLLCL----ESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRDE 257 (1103)
Q Consensus 182 ~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ 257 (1103)
.+-+|.++-.+++.+.|.. ..-.-.+++++|++|+|||.|++.+++.+...|-... +--++..+
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~s-LGGvrDEA----------- 390 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRIS-LGGVRDEA----------- 390 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEe-cCccccHH-----------
Confidence 4568999999999888872 2223479999999999999999999998877774221 22122111
Q ss_pred HHHhhhCCCCccccccchHHHH--HhhcCCceEEEEeCCCC-----CHh----HHHHHhCCCC-ccC--------CCcE-
Q 044579 258 VISQVLGENLKIGTLIVPQNIK--KRLQRVKVLIVLDDVND-----EFT----QLESLAGGVD-RFS--------PGSR- 316 (1103)
Q Consensus 258 ll~~l~~~~~~~~~~~~~~~l~--~~L~~k~~LlVLDdv~~-----~~~----~l~~l~~~~~-~~~--------~gs~- 316 (1103)
++.|.....-....+..++ ...+-+.-+++||.+|- .-+ .++.|-+..+ .|. .=|.
T Consensus 391 ---EIRGHRRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~V 467 (782)
T COG0466 391 ---EIRGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKV 467 (782)
T ss_pred ---HhccccccccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhhe
Confidence 1111111111111222222 22345677999999862 011 1222222111 000 1133
Q ss_pred EEEEeCch-h-h-HhhcCcceEEEccCCChhHHHHHHHHhh
Q 044579 317 IVITTRDK-Q-V-LDKCGVSYIYKVKRLEHDNALELFCRKA 354 (1103)
Q Consensus 317 IIiTTR~~-~-v-~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 354 (1103)
+.|||-+. + + ........++++.+.+++|-.++-.++.
T Consensus 468 mFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 468 MFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 34555433 2 1 1223445688999999999888777665
No 295
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.10 E-value=0.0027 Score=76.35 Aligned_cols=108 Identities=21% Similarity=0.218 Sum_probs=66.2
Q ss_pred cccccccccccc-cccc--cccccccCCcceEecCCCC-CCCccCC-----CCCCCCCccEEEecCCCCCCccc-cccc-
Q 044579 595 LENLIELRLPYS-KVEQ--IWEGKKEASKLKSIDLCHS-QHLIRMP-----DLSEIPNLERTNFFNCTNLVLVP-SSIQ- 663 (1103)
Q Consensus 595 l~~L~~L~L~~n-~i~~--l~~~~~~l~~L~~L~L~~~-~~~~~~p-----~l~~l~~L~~L~L~~~~~l~~~~-~~i~- 663 (1103)
.++|+.|.+..+ .+.. +-......++|+.|+++++ ......+ ....+++|+.|+++.|..+...- ..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 577888888766 3333 3345677899999999883 3222222 24556888888888887544321 1222
Q ss_pred CCCcccEEEccCCCCCcccCCCC---CCCCCcEEEccCCcCC
Q 044579 664 NFNNLSMLCFRGCESLRSFPRDI---HFVSPVTIDFSFCVNL 702 (1103)
Q Consensus 664 ~l~~L~~L~L~~~~~l~~lp~~~---~l~~L~~L~l~~c~~l 702 (1103)
.+++|+.|.+.+|..++...-.. .+++|++|++++|..+
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 26788888877776533221111 4566777777777654
No 296
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.10 E-value=0.075 Score=59.01 Aligned_cols=49 Identities=24% Similarity=0.261 Sum_probs=37.8
Q ss_pred HHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEE
Q 044579 191 IEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMA 240 (1103)
Q Consensus 191 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 240 (1103)
+.++...|-.+--.-.++.|-|-+|||||||..+++.++..+- .+.++.
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVs 127 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVS 127 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEe
Confidence 4566666643323346899999999999999999999998777 677775
No 297
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.09 E-value=0.047 Score=59.06 Aligned_cols=26 Identities=23% Similarity=0.512 Sum_probs=22.6
Q ss_pred EEEEeecCCChhHHHHHHHHHHHhcc
Q 044579 207 IVGIWGMGGIGKTTIASVVFHQISRH 232 (1103)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (1103)
.|.+.|++|+||||+|++++..+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 37899999999999999999877544
No 298
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.07 E-value=0.059 Score=63.70 Aligned_cols=74 Identities=22% Similarity=0.350 Sum_probs=44.8
Q ss_pred cCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHHHHHHhhhCCCCccccccchHHHHH
Q 044579 201 ESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKK 280 (1103)
Q Consensus 201 ~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~ 280 (1103)
+.+.-+++.++|++|+||||||..++++- .|. ++=+. .++......+-..+...+... .
T Consensus 322 ~RP~kKilLL~GppGlGKTTLAHViAkqa--GYs-VvEIN----ASDeRt~~~v~~kI~~avq~~--------------s 380 (877)
T KOG1969|consen 322 KRPPKKILLLCGPPGLGKTTLAHVIAKQA--GYS-VVEIN----ASDERTAPMVKEKIENAVQNH--------------S 380 (877)
T ss_pred CCCccceEEeecCCCCChhHHHHHHHHhc--Cce-EEEec----ccccccHHHHHHHHHHHHhhc--------------c
Confidence 34567899999999999999999999752 232 11121 233333333333333332211 1
Q ss_pred hh--cCCceEEEEeCCC
Q 044579 281 RL--QRVKVLIVLDDVN 295 (1103)
Q Consensus 281 ~L--~~k~~LlVLDdv~ 295 (1103)
.+ .+++.-||+|.+|
T Consensus 381 ~l~adsrP~CLViDEID 397 (877)
T KOG1969|consen 381 VLDADSRPVCLVIDEID 397 (877)
T ss_pred ccccCCCcceEEEeccc
Confidence 12 2568889999997
No 299
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.07 E-value=0.057 Score=57.08 Aligned_cols=123 Identities=17% Similarity=0.170 Sum_probs=67.8
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEec--hhhhcccChHHHHHHHHHhhhCCC-------Cccccccch
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANV--REKANKMGVIHVRDEVISQVLGEN-------LKIGTLIVP 275 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~--~~~~~~~~~~~~~~~ll~~l~~~~-------~~~~~~~~~ 275 (1103)
..++||+|..|.||||+|+.+..-.... .+.+++..- .... .....+...+++..+.... .+.......
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~pt-~G~i~f~g~~i~~~~-~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ 116 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEEPT-SGEILFEGKDITKLS-KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ 116 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcCCC-CceEEEcCcchhhcc-hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence 3589999999999999999998644333 344444311 0000 1122233444444432111 112222222
Q ss_pred H-HHHHhhcCCceEEEEeCCCC-----CHhHHHHHhCCCCccCCCcEEEEEeCchhhHhhc
Q 044579 276 Q-NIKKRLQRVKVLIVLDDVND-----EFTQLESLAGGVDRFSPGSRIVITTRDKQVLDKC 330 (1103)
Q Consensus 276 ~-~l~~~L~~k~~LlVLDdv~~-----~~~~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~~ 330 (1103)
. .+.+.|.-++-++|.|..-. ...|.-.+...+.. ..|-..+..|-|-.+...+
T Consensus 117 Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 117 RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhCCeEEEEEEEHHhhhhh
Confidence 2 77888899999999998632 12333333333221 2466677777777666544
No 300
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.07 E-value=0.059 Score=54.52 Aligned_cols=94 Identities=22% Similarity=0.288 Sum_probs=48.4
Q ss_pred EEEEeecCCChhHHHHHHHHHHHh-ccCCce-EEEEechhhhcccChHHHHHHHHHhhhCCCCccccccchHHHHHhhcC
Q 044579 207 IVGIWGMGGIGKTTIASVVFHQIS-RHFQGK-CFMANVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQR 284 (1103)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~-~~F~~~-~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~ 284 (1103)
.|.|.|.+|.||||+|+.+++++. .|.+.. .|...+ ... ..+..++-.-+.... -..+......+..++..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~---~~~---t~lg~~~k~~i~~g~-lv~d~i~~~~v~~rl~~ 74 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAI---AER---TELGEEIKKYIDKGE-LVPDEIVNGLVKERLDE 74 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhh---ccC---ChHHHHHHHHHHcCC-ccchHHHHHHHHHHHHh
Confidence 378999999999999999998731 122211 111111 011 112222222122222 11111122255555533
Q ss_pred C--ceEEEEeCCCCCHhHHHHHhCC
Q 044579 285 V--KVLIVLDDVNDEFTQLESLAGG 307 (1103)
Q Consensus 285 k--~~LlVLDdv~~~~~~l~~l~~~ 307 (1103)
. +-.+|+|+.-....|.+.+...
T Consensus 75 ~d~~~~~I~dg~PR~~~qa~~l~r~ 99 (178)
T COG0563 75 ADCKAGFILDGFPRTLCQARALKRL 99 (178)
T ss_pred hcccCeEEEeCCCCcHHHHHHHHHH
Confidence 2 2289999997667777766543
No 301
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.05 E-value=0.021 Score=59.21 Aligned_cols=26 Identities=38% Similarity=0.608 Sum_probs=23.5
Q ss_pred EEEEeecCCChhHHHHHHHHHHHhcc
Q 044579 207 IVGIWGMGGIGKTTIASVVFHQISRH 232 (1103)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (1103)
+|+|.|.+|+||||+|+++...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 69999999999999999999987643
No 302
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.00 E-value=0.024 Score=66.17 Aligned_cols=50 Identities=22% Similarity=0.304 Sum_probs=41.3
Q ss_pred CCccccchhHHHHHHhhc----ccCCCeEEEEEeecCCChhHHHHHHHHHHHhc
Q 044579 182 DGLVGLNTRIEEMKSLLC----LESHDVRIVGIWGMGGIGKTTIASVVFHQISR 231 (1103)
Q Consensus 182 ~~~vGr~~~~~~l~~~L~----~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (1103)
.+++|+++.++++.+.|. ......+++.++|++|+||||||+.+++-+..
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 468999999999988873 22345689999999999999999999986543
No 303
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.99 E-value=0.051 Score=54.44 Aligned_cols=116 Identities=14% Similarity=0.187 Sum_probs=60.2
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHHHHHHhhhCCCCccccccchH-HHHHhhcC
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQ-NIKKRLQR 284 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~-~l~~~L~~ 284 (1103)
.+++|.|..|.|||||.+.++-.. ....+.+++.... .. ...... ......+-....+..+..+ .+.+.+..
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~v~~~g~~-~~-~~~~~~----~~~~~i~~~~qLS~G~~qrl~laral~~ 99 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY-KPDSGEILVDGKE-VS-FASPRD----ARRAGIAMVYQLSVGERQMVEIARALAR 99 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEE-CC-cCCHHH----HHhcCeEEEEecCHHHHHHHHHHHHHhc
Confidence 589999999999999999988643 2345556554210 00 001111 1111000000011111222 56666777
Q ss_pred CceEEEEeCCCCC--HhHHHHHhCCCCcc-CCCcEEEEEeCchhhHh
Q 044579 285 VKVLIVLDDVNDE--FTQLESLAGGVDRF-SPGSRIVITTRDKQVLD 328 (1103)
Q Consensus 285 k~~LlVLDdv~~~--~~~l~~l~~~~~~~-~~gs~IIiTTR~~~v~~ 328 (1103)
++-++++|+.-.. ....+.+...+... ..|..||++|.+...+.
T Consensus 100 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 100 NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 8889999987422 22222222222111 24678889998876443
No 304
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.99 E-value=0.047 Score=54.54 Aligned_cols=31 Identities=23% Similarity=0.299 Sum_probs=25.0
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHhccCCce
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQISRHFQGK 236 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~ 236 (1103)
+.|.+.|.+|+||||+|++++..+++.-..+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~v 32 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRV 32 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhc
Confidence 4678899999999999999998776554433
No 305
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.98 E-value=0.1 Score=52.75 Aligned_cols=127 Identities=17% Similarity=0.233 Sum_probs=61.8
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEec-hhhhcc-cChHHHHHHHHHhhhCCC----CccccccchH--
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANV-REKANK-MGVIHVRDEVISQVLGEN----LKIGTLIVPQ-- 276 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~-~~~~~~-~~~~~~~~~ll~~l~~~~----~~~~~~~~~~-- 276 (1103)
-.+++|.|..|+|||||.+.+... .+.+.+... ...... .... .+.+.+..+.-.. ........++
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~-----~G~v~~~~~~~~~~~~~~~~~-~q~~~l~~~~L~~~~~~~~~~~LSgGq~q 94 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYA-----SGKARLISFLPKFSRNKLIFI-DQLQFLIDVGLGYLTLGQKLSTLSGGELQ 94 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhc-----CCcEEECCcccccccccEEEE-hHHHHHHHcCCCccccCCCcCcCCHHHHH
Confidence 358999999999999999988631 111111100 000000 0000 0123444432111 1112222222
Q ss_pred --HHHHhhcCC--ceEEEEeCCCCC--HhHHHHHhCCCCc-cCCCcEEEEEeCchhhHhhcCcceEEEcc
Q 044579 277 --NIKKRLQRV--KVLIVLDDVNDE--FTQLESLAGGVDR-FSPGSRIVITTRDKQVLDKCGVSYIYKVK 339 (1103)
Q Consensus 277 --~l~~~L~~k--~~LlVLDdv~~~--~~~l~~l~~~~~~-~~~gs~IIiTTR~~~v~~~~~~~~~~~l~ 339 (1103)
.+.+.+..+ +=++++|+.-.. ....+.+...+.. ...|..||++|.+.+... ..+.++.+.
T Consensus 95 rl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~--~~d~i~~l~ 162 (176)
T cd03238 95 RVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS--SADWIIDFG 162 (176)
T ss_pred HHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH--hCCEEEEEC
Confidence 455566667 788899987422 2222222222211 124778889998887653 245555553
No 306
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.95 E-value=0.015 Score=54.27 Aligned_cols=29 Identities=31% Similarity=0.467 Sum_probs=21.1
Q ss_pred EEEeecCCChhHHHHHHHHHHHhccCCce
Q 044579 208 VGIWGMGGIGKTTIASVVFHQISRHFQGK 236 (1103)
Q Consensus 208 v~I~G~gGiGKTtLA~~v~~~~~~~F~~~ 236 (1103)
|.|+|.+|+||||+|++++..+...|..+
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RI 30 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRI 30 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEE
Confidence 67999999999999999999988887643
No 307
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.94 E-value=0.057 Score=54.27 Aligned_cols=126 Identities=11% Similarity=0.079 Sum_probs=62.0
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechh---hhcccChH--HHHHHHHHhhhCCCCccccccchH-HH
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVRE---KANKMGVI--HVRDEVISQVLGENLKIGTLIVPQ-NI 278 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~---~~~~~~~~--~~~~~ll~~l~~~~~~~~~~~~~~-~l 278 (1103)
-.+++|.|..|.|||||++.++-.... ..+.+++...+. ..+...+. .+.+.+... .....+.....+ .+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~l 102 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPW-GSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLAF 102 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCCceEEEECCCCccccccHHHHhhcc---CCCCCCHHHHHHHHH
Confidence 358999999999999999999864322 233333321000 01111110 111111100 111111112222 56
Q ss_pred HHhhcCCceEEEEeCCCCC--HhHHHHHhCCCCccCCCcEEEEEeCchhhHhhcCcceEEEc
Q 044579 279 KKRLQRVKVLIVLDDVNDE--FTQLESLAGGVDRFSPGSRIVITTRDKQVLDKCGVSYIYKV 338 (1103)
Q Consensus 279 ~~~L~~k~~LlVLDdv~~~--~~~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~~l 338 (1103)
.+.+..++=++++|+--.. ....+.+...+... +..||++|.+..... ..++++.+
T Consensus 103 aral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~--~~d~i~~l 160 (166)
T cd03223 103 ARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK--FHDRVLDL 160 (166)
T ss_pred HHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh--hCCEEEEE
Confidence 6667778889999986322 22222222222112 467888888776543 34455544
No 308
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=94.93 E-value=0.064 Score=60.38 Aligned_cols=47 Identities=28% Similarity=0.203 Sum_probs=37.3
Q ss_pred CCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHH
Q 044579 182 DGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQ 228 (1103)
Q Consensus 182 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (1103)
+.++|....++++.+.+..-...-.-|.|+|..|+||+++|+.+...
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 46899999998887776643333456889999999999999998853
No 309
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.87 E-value=0.04 Score=63.66 Aligned_cols=46 Identities=22% Similarity=0.121 Sum_probs=38.3
Q ss_pred CCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhc
Q 044579 182 DGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISR 231 (1103)
Q Consensus 182 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (1103)
..++||++.++.+...+..+. .|.|.|++|+|||++|+.+......
T Consensus 20 ~~i~gre~vI~lll~aalag~----hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC----CEEEECCCChhHHHHHHHHHHHhcc
Confidence 468999999999887775443 5889999999999999999986543
No 310
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=94.83 E-value=0.7 Score=54.93 Aligned_cols=200 Identities=13% Similarity=0.181 Sum_probs=113.1
Q ss_pred CCCCccccchhHHHHHHhhcc--cC-CCeEEEEEeecCCChhHHHHHHHHHHHh--------ccCCceEEEEechhhhcc
Q 044579 180 DLDGLVGLNTRIEEMKSLLCL--ES-HDVRIVGIWGMGGIGKTTIASVVFHQIS--------RHFQGKCFMANVREKANK 248 (1103)
Q Consensus 180 ~~~~~vGr~~~~~~l~~~L~~--~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~--------~~F~~~~~~~~~~~~~~~ 248 (1103)
.+..+-+|+.+..+|...+.. .. .....+-|.|.+|.|||..+..|.+.++ ..|+ .+.+. .-.-
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveIN----gm~l 468 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEIN----GLRL 468 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEc----ceee
Confidence 567788999999999888762 22 3345899999999999999999998543 2343 23333 1223
Q ss_pred cChHHHHHHHHHhhhCCCCccccccchHHHHHhh-----cCCceEEEEeCCCCCHhH-HHHHhCCCCcc-CCCcEEEEEe
Q 044579 249 MGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRL-----QRVKVLIVLDDVNDEFTQ-LESLAGGVDRF-SPGSRIVITT 321 (1103)
Q Consensus 249 ~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVLDdv~~~~~~-l~~l~~~~~~~-~~gs~IIiTT 321 (1103)
....++...|...+.+....-.. ....+..+. +.+.+++++|++|.-... .+.+-..++|. .++|+++|-+
T Consensus 469 ~~~~~~Y~~I~~~lsg~~~~~~~--al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~ 546 (767)
T KOG1514|consen 469 ASPREIYEKIWEALSGERVTWDA--ALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIA 546 (767)
T ss_pred cCHHHHHHHHHHhcccCcccHHH--HHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEE
Confidence 45677888888888776533211 111333333 345689999998621110 11222223443 4677766644
Q ss_pred C--chhhHh---------hcCcceEEEccCCChhHHHHHHHHhhhccCC-CChhHHHHHHHHHHHhCCChhHHHHHHh
Q 044579 322 R--DKQVLD---------KCGVSYIYKVKRLEHDNALELFCRKAIRQNS-RSQDLLELSKEIVGYAKGNPLALEVLGS 387 (1103)
Q Consensus 322 R--~~~v~~---------~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~i~~~~~G~PLal~~lg~ 387 (1103)
= ..++.. .++ -..+...+.++++-.+....+.-+-.. .....+-++++|+.-.|..-.|+.+.-+
T Consensus 547 IaNTmdlPEr~l~nrvsSRlg-~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~R 623 (767)
T KOG1514|consen 547 IANTMDLPERLLMNRVSSRLG-LTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRR 623 (767)
T ss_pred ecccccCHHHHhccchhhhcc-ceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHH
Confidence 2 111111 112 235567777777777777665432211 1122333455555555555555554443
No 311
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.80 E-value=0.16 Score=58.30 Aligned_cols=29 Identities=24% Similarity=0.329 Sum_probs=25.1
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHHHhcc
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQISRH 232 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (1103)
...+|.++|..|+||||+|..++..++.+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~ 127 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRK 127 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 36899999999999999999999876554
No 312
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.75 E-value=0.47 Score=53.29 Aligned_cols=37 Identities=27% Similarity=0.404 Sum_probs=28.7
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEE
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMA 240 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 240 (1103)
..++++++|+.|+||||++..++.....+-..+.++.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4689999999999999999999987654433455554
No 313
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.73 E-value=0.065 Score=55.31 Aligned_cols=54 Identities=26% Similarity=0.429 Sum_probs=36.2
Q ss_pred ccccchhHHHHHHhhc-----------ccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEec
Q 044579 184 LVGLNTRIEEMKSLLC-----------LESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANV 242 (1103)
Q Consensus 184 ~vGr~~~~~~l~~~L~-----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~ 242 (1103)
+=|-.++++++.+... .+-+..+-|.++|++|.|||-+|++|+++. ..||+..+
T Consensus 179 vggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt-----dacfirvi 243 (435)
T KOG0729|consen 179 VGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT-----DACFIRVI 243 (435)
T ss_pred ccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc-----CceEEeeh
Confidence 3455556666554432 122345668899999999999999999875 34566543
No 314
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.69 E-value=0.07 Score=56.27 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=20.5
Q ss_pred EEEEeecCCChhHHHHHHHHHHH
Q 044579 207 IVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
.|.|.|++|+||||+|+.++.++
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998765
No 315
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.68 E-value=0.095 Score=55.43 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=20.4
Q ss_pred EEEeecCCChhHHHHHHHHHHH
Q 044579 208 VGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 208 v~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
|.|.|++|+||||+|+.+++++
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999998875
No 316
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.67 E-value=0.45 Score=49.18 Aligned_cols=141 Identities=16% Similarity=0.303 Sum_probs=76.5
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHHHHHHhhhCCCCccccccchHHHHHhh--
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRL-- 282 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L-- 282 (1103)
.+-|..||++|.|||-+|++.+.+....|-..+ + -++.....++. +..+++..
T Consensus 205 PKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLA------------g-----PQLVQMfIGdG--------AkLVRDAFaL 259 (424)
T KOG0652|consen 205 PKGVLMYGPPGTGKTLMARACAAQTNATFLKLA------------G-----PQLVQMFIGDG--------AKLVRDAFAL 259 (424)
T ss_pred CCceEeeCCCCCcHHHHHHHHHHhccchHHHhc------------c-----hHHHhhhhcch--------HHHHHHHHHH
Confidence 456889999999999999999887655442110 0 01111111111 11222221
Q ss_pred --cCCceEEEEeCCCC------------CHhH---HHHHhCCCCccCC--CcEEEEEeCchh-----hHhhcCcceEEEc
Q 044579 283 --QRVKVLIVLDDVND------------EFTQ---LESLAGGVDRFSP--GSRIVITTRDKQ-----VLDKCGVSYIYKV 338 (1103)
Q Consensus 283 --~~k~~LlVLDdv~~------------~~~~---l~~l~~~~~~~~~--gs~IIiTTR~~~-----v~~~~~~~~~~~l 338 (1103)
...+.+|.+|.++. +.+. .-.++..++.|.+ ..+||-.|..-+ ++.+-..++.++.
T Consensus 260 AKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEf 339 (424)
T KOG0652|consen 260 AKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEF 339 (424)
T ss_pred hhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccCHHHhhcccccccccC
Confidence 34578889998752 1110 1223444554544 345666664333 3334345667777
Q ss_pred cCCChhHHHHHHHHhhhccC-CCChhHHHHHHH
Q 044579 339 KRLEHDNALELFCRKAIRQN-SRSQDLLELSKE 370 (1103)
Q Consensus 339 ~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~ 370 (1103)
+.-+++.-.+++.-+..+.+ .+.-+++++++.
T Consensus 340 P~Pne~aRarIlQIHsRKMnv~~DvNfeELaRs 372 (424)
T KOG0652|consen 340 PHPNEEARARILQIHSRKMNVSDDVNFEELARS 372 (424)
T ss_pred CCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhc
Confidence 77666666677776665543 344466666653
No 317
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=94.66 E-value=0.1 Score=57.76 Aligned_cols=50 Identities=22% Similarity=0.188 Sum_probs=38.0
Q ss_pred HHHHHHhhc-ccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEE
Q 044579 191 IEEMKSLLC-LESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMA 240 (1103)
Q Consensus 191 ~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 240 (1103)
...|..+|. .+-+.-+++-|+|.+|+||||||.+++......-..++|+.
T Consensus 40 i~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId 90 (321)
T TIGR02012 40 SLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 90 (321)
T ss_pred CHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence 455666665 44455689999999999999999999887766655667775
No 318
>PTZ00301 uridine kinase; Provisional
Probab=94.66 E-value=0.029 Score=58.42 Aligned_cols=29 Identities=24% Similarity=0.588 Sum_probs=24.9
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhccC
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISRHF 233 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 233 (1103)
..+|||.|.+|+||||||+.+.+++...+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~ 31 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHC 31 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhc
Confidence 46899999999999999999998775444
No 319
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.66 E-value=0.42 Score=54.51 Aligned_cols=25 Identities=28% Similarity=0.260 Sum_probs=22.4
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHH
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
..+++++|.+|+||||+|..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999754
No 320
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.65 E-value=0.45 Score=54.38 Aligned_cols=27 Identities=26% Similarity=0.304 Sum_probs=23.8
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHHHh
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
..++|.++|..|+||||.+..++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999998664
No 321
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.65 E-value=0.099 Score=52.97 Aligned_cols=125 Identities=14% Similarity=0.251 Sum_probs=63.5
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHHHHHHhhhCCCCc----------cccccc
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRDEVISQVLGENLK----------IGTLIV 274 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~----------~~~~~~ 274 (1103)
-.+++|.|..|.|||||++.++-... ...+.+.+.... .. .......... +..+ .++.. .+..+.
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~-~~-~~~~~~~~~~-i~~~-~q~~~~~~~tv~~~lLS~G~~ 102 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLR-PTSGRVRLDGAD-IS-QWDPNELGDH-VGYL-PQDDELFSGSIAENILSGGQR 102 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC-CCCCeEEECCEE-cc-cCCHHHHHhh-eEEE-CCCCccccCcHHHHCcCHHHH
Confidence 34899999999999999999986432 334455543210 00 0011111110 0000 01100 011111
Q ss_pred hH-HHHHhhcCCceEEEEeCCCCCHh-----HHHHHhCCCCccCCCcEEEEEeCchhhHhhcCcceEEEc
Q 044579 275 PQ-NIKKRLQRVKVLIVLDDVNDEFT-----QLESLAGGVDRFSPGSRIVITTRDKQVLDKCGVSYIYKV 338 (1103)
Q Consensus 275 ~~-~l~~~L~~k~~LlVLDdv~~~~~-----~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~~l 338 (1103)
.+ .+-+.+..++=+++||+.....+ .+..+...+. ..|..||++|.+..... . .++++.+
T Consensus 103 qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~-~-~d~v~~l 168 (173)
T cd03246 103 QRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALK--AAGATRIVIAHRPETLA-S-ADRILVL 168 (173)
T ss_pred HHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHH-h-CCEEEEE
Confidence 12 55566677788999998742221 2222222221 24678888888877653 2 4555554
No 322
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.61 E-value=0.039 Score=56.67 Aligned_cols=30 Identities=40% Similarity=0.517 Sum_probs=26.8
Q ss_pred CCeEEEEEeecCCChhHHHHHHHHHHHhcc
Q 044579 203 HDVRIVGIWGMGGIGKTTIASVVFHQISRH 232 (1103)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (1103)
..+.+|||.|.+|.||||+|+.++..+...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 456899999999999999999999988765
No 323
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.59 E-value=0.029 Score=46.91 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=21.0
Q ss_pred EEEEeecCCChhHHHHHHHHHHH
Q 044579 207 IVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
+++|.|..|+||||+|+++.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999886
No 324
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.57 E-value=0.085 Score=57.24 Aligned_cols=27 Identities=22% Similarity=0.257 Sum_probs=21.2
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHhcc
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQISRH 232 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (1103)
..|.|+|.+|+||||+|+++...+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~ 28 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEK 28 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhc
Confidence 368999999999999999999877653
No 325
>PRK10867 signal recognition particle protein; Provisional
Probab=94.56 E-value=0.23 Score=57.51 Aligned_cols=29 Identities=24% Similarity=0.392 Sum_probs=25.2
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHHHhcc
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQISRH 232 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (1103)
...+|.++|.+|+||||+|..++..++.+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 36799999999999999999998877655
No 326
>PRK14528 adenylate kinase; Provisional
Probab=94.53 E-value=0.1 Score=53.48 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.1
Q ss_pred EEEEEeecCCChhHHHHHHHHHHH
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
+.|.|.|++|+||||+|+.++..+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999998765
No 327
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.52 E-value=0.023 Score=52.31 Aligned_cols=26 Identities=35% Similarity=0.629 Sum_probs=22.0
Q ss_pred EEEeecCCChhHHHHHHHHHHHhccC
Q 044579 208 VGIWGMGGIGKTTIASVVFHQISRHF 233 (1103)
Q Consensus 208 v~I~G~gGiGKTtLA~~v~~~~~~~F 233 (1103)
|-|+|.+|+|||++|+.++..+.+.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 46899999999999999998766543
No 328
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.52 E-value=0.2 Score=57.20 Aligned_cols=147 Identities=20% Similarity=0.247 Sum_probs=77.3
Q ss_pred CCccccchhHHHH---HHhhccc-------CCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccCh
Q 044579 182 DGLVGLNTRIEEM---KSLLCLE-------SHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGV 251 (1103)
Q Consensus 182 ~~~vGr~~~~~~l---~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~ 251 (1103)
++.-|.|+..++| .+.|... ..=.+=|.++|++|.|||-||++++-+-.-. |+...+. .+
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP-----FF~~sGS---EF-- 373 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP-----FFYASGS---EF-- 373 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC-----eEecccc---ch--
Confidence 4566777665555 4555421 1224668899999999999999998653222 2221110 00
Q ss_pred HHHHHHHHHhhhCCCCccccccchH-HHHHhh----cCCceEEEEeCCCC------CH------hHHHHHhCCCCccCCC
Q 044579 252 IHVRDEVISQVLGENLKIGTLIVPQ-NIKKRL----QRVKVLIVLDDVND------EF------TQLESLAGGVDRFSPG 314 (1103)
Q Consensus 252 ~~~~~~ll~~l~~~~~~~~~~~~~~-~l~~~L----~~k~~LlVLDdv~~------~~------~~l~~l~~~~~~~~~g 314 (1103)
. +++ .+ .+. ++++.. +.-+++|.+|.+|. .. ..+..++..++.|.+.
T Consensus 374 d----Em~---VG---------vGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qN 437 (752)
T KOG0734|consen 374 D----EMF---VG---------VGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQN 437 (752)
T ss_pred h----hhh---hc---------ccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcC
Confidence 0 000 00 111 222222 34589999999862 11 1245566666666554
Q ss_pred cEEEE--EeCchhhHhh-c----CcceEEEccCCChhHHHHHHHHhh
Q 044579 315 SRIVI--TTRDKQVLDK-C----GVSYIYKVKRLEHDNALELFCRKA 354 (1103)
Q Consensus 315 s~IIi--TTR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~a 354 (1103)
.-||| .|-.++.+.. . ..+..+.|+.-+..--.++|..+.
T Consensus 438 eGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl 484 (752)
T KOG0734|consen 438 EGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYL 484 (752)
T ss_pred CceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHH
Confidence 33333 4443333322 1 345566677666665566666554
No 329
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=94.51 E-value=0.12 Score=64.78 Aligned_cols=49 Identities=18% Similarity=0.246 Sum_probs=38.3
Q ss_pred CCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHH
Q 044579 181 LDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 181 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
...++|....++++.+.+..-...-..|.|+|..|+|||++|+.+++.-
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 4579999999888876665333334578899999999999999998753
No 330
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.50 E-value=0.13 Score=53.82 Aligned_cols=209 Identities=16% Similarity=0.293 Sum_probs=113.5
Q ss_pred CCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhc------cCCceEEEEechh------hhc-
Q 044579 181 LDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISR------HFQGKCFMANVRE------KAN- 247 (1103)
Q Consensus 181 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~F~~~~~~~~~~~------~~~- 247 (1103)
.+.+.++++.-..+.++.. .++.....++|+.|.||-|.+..+.+++-+ +-+...|...... ++.
T Consensus 12 l~~l~~~~e~~~~Lksl~~--~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~ 89 (351)
T KOG2035|consen 12 LDELIYHEELANLLKSLSS--TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSN 89 (351)
T ss_pred hhhcccHHHHHHHHHHhcc--cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEeccc
Confidence 3446677777777776654 345678889999999999999998886422 2223333321111 000
Q ss_pred --------ccC--hHHHHHHHHHhhhCCCCccccccchHHHHHhhcCCce-EEEEeCCCC-CHhHHHHHhCCCCccCCCc
Q 044579 248 --------KMG--VIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKV-LIVLDDVND-EFTQLESLAGGVDRFSPGS 315 (1103)
Q Consensus 248 --------~~~--~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~-LlVLDdv~~-~~~~l~~l~~~~~~~~~gs 315 (1103)
+.| -.-+.++++.+...... +.. -..+.+ ++|+-.++. ..+...+|..........+
T Consensus 90 yHlEitPSDaG~~DRvViQellKevAQt~q----------ie~-~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~ 158 (351)
T KOG2035|consen 90 YHLEITPSDAGNYDRVVIQELLKEVAQTQQ----------IET-QGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNC 158 (351)
T ss_pred ceEEeChhhcCcccHHHHHHHHHHHHhhcc----------hhh-ccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCc
Confidence 000 12233444444322110 000 012233 555665652 1223334433333345677
Q ss_pred EEEEEeCch-hhHhhc-CcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChh-HHHHHHhhcC--
Q 044579 316 RIVITTRDK-QVLDKC-GVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPL-ALEVLGSSLY-- 390 (1103)
Q Consensus 316 ~IIiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~lg~~L~-- 390 (1103)
|+|+.--.. .+.... ...-.+.++..+++|....++..+-++....+ .+++.+|+++++|+-- ||-++ ...+
T Consensus 159 RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllml-E~~~~~ 235 (351)
T KOG2035|consen 159 RLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLML-EAVRVN 235 (351)
T ss_pred eEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHH-HHHHhc
Confidence 887743321 111111 22346789999999999999988755554433 5889999999999753 22222 1111
Q ss_pred C---------CCHHHHHHHHHHhh
Q 044579 391 Q---------KSKQQWKVKLQNLK 405 (1103)
Q Consensus 391 ~---------~~~~~w~~~l~~l~ 405 (1103)
+ ...-+|+-.+....
T Consensus 236 n~~~~a~~~~i~~~dWe~~i~e~a 259 (351)
T KOG2035|consen 236 NEPFTANSQVIPKPDWEIYIQEIA 259 (351)
T ss_pred cccccccCCCCCCccHHHHHHHHH
Confidence 1 24568988877654
No 331
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=94.50 E-value=0.1 Score=54.79 Aligned_cols=22 Identities=27% Similarity=0.302 Sum_probs=19.8
Q ss_pred EEEeecCCChhHHHHHHHHHHH
Q 044579 208 VGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 208 v~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
|.|.|++|+||||+|+.++.++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6789999999999999998764
No 332
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.49 E-value=0.25 Score=48.63 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=21.6
Q ss_pred EEEEeecCCChhHHHHHHHHHHHh
Q 044579 207 IVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
+|.|+|.+|+||||+|+.+...+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999998764
No 333
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=94.48 E-value=0.13 Score=56.97 Aligned_cols=51 Identities=22% Similarity=0.171 Sum_probs=38.7
Q ss_pred hHHHHHHhhc-ccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEE
Q 044579 190 RIEEMKSLLC-LESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMA 240 (1103)
Q Consensus 190 ~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 240 (1103)
-...|..+|. .+=+.-+++-|+|++|+||||||..++......-..++|+.
T Consensus 39 Gi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId 90 (325)
T cd00983 39 GSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFID 90 (325)
T ss_pred CCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 3455666665 34455689999999999999999999887766656677775
No 334
>PRK06762 hypothetical protein; Provisional
Probab=94.46 E-value=0.033 Score=56.04 Aligned_cols=24 Identities=38% Similarity=0.513 Sum_probs=22.3
Q ss_pred EEEEEeecCCChhHHHHHHHHHHH
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
++|.|.|++|+||||+|+.+++.+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999999876
No 335
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.45 E-value=0.05 Score=58.00 Aligned_cols=32 Identities=31% Similarity=0.380 Sum_probs=27.0
Q ss_pred CCCeEEEEEeecCCChhHHHHHHHHHHHhccC
Q 044579 202 SHDVRIVGIWGMGGIGKTTIASVVFHQISRHF 233 (1103)
Q Consensus 202 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 233 (1103)
.....+++|.|..|.|||||++.+...+....
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~ 61 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDG 61 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhcc
Confidence 34578999999999999999999998766543
No 336
>PRK03839 putative kinase; Provisional
Probab=94.44 E-value=0.03 Score=57.18 Aligned_cols=24 Identities=33% Similarity=0.663 Sum_probs=21.7
Q ss_pred EEEEeecCCChhHHHHHHHHHHHh
Q 044579 207 IVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
.|.|.|++|+||||+|+.+++++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998864
No 337
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=94.40 E-value=0.1 Score=48.98 Aligned_cols=62 Identities=23% Similarity=0.324 Sum_probs=54.3
Q ss_pred cEEEcCccccccCchHHHHHHHHHhCCCeEEeeCccccCCCcchHHHHHHHhhcceEEEEecCCc
Q 044579 11 EVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELKKGDEISPALSNAIESSDISIIIFSKGY 75 (1103)
Q Consensus 11 dvfis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y 75 (1103)
.|||.|. +|.. +++.+...|+..|+.+.+-.+....|..+.+.+.+++.++..+||+++|+=
T Consensus 1 kVFIvhg-~~~~--~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpDD 62 (125)
T PF10137_consen 1 KVFIVHG-RDLA--AAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPDD 62 (125)
T ss_pred CEEEEeC-CCHH--HHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEcccc
Confidence 3899996 7754 999999999988998877766778999999999999999999999999843
No 338
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.38 E-value=0.13 Score=52.15 Aligned_cols=114 Identities=19% Similarity=0.214 Sum_probs=59.7
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEec--hhhhcccChHHHHHHHHHhhhCCCCccccccchH-HHHHhh
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANV--REKANKMGVIHVRDEVISQVLGENLKIGTLIVPQ-NIKKRL 282 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~--~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~-~l~~~L 282 (1103)
.+++|.|..|.|||||++.++--.. ...+.+.+... .-..+... .+...... .+.+.+
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~laral 86 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLI-PNGDNDEWDGITPVYKPQYID------------------LSGGELQRVAIAAAL 86 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC-CCCcEEEECCEEEEEEcccCC------------------CCHHHHHHHHHHHHH
Confidence 4899999999999999998886432 23444444311 00000000 11111112 556667
Q ss_pred cCCceEEEEeCCCCCH--hHHHHHhCCCCcc-CC-CcEEEEEeCchhhHhhcCcceEEEcc
Q 044579 283 QRVKVLIVLDDVNDEF--TQLESLAGGVDRF-SP-GSRIVITTRDKQVLDKCGVSYIYKVK 339 (1103)
Q Consensus 283 ~~k~~LlVLDdv~~~~--~~l~~l~~~~~~~-~~-gs~IIiTTR~~~v~~~~~~~~~~~l~ 339 (1103)
..++-++++|.--... ...+.+...+... .. +..||++|.+....... .++++.+.
T Consensus 87 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~-~d~i~~l~ 146 (177)
T cd03222 87 LRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYL-SDRIHVFE 146 (177)
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHh-CCEEEEEc
Confidence 7788899999874222 2222221111111 12 36788888877655432 23444444
No 339
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.38 E-value=0.038 Score=58.06 Aligned_cols=27 Identities=41% Similarity=0.678 Sum_probs=24.2
Q ss_pred CCeEEEEEeecCCChhHHHHHHHHHHH
Q 044579 203 HDVRIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
....+|+|.|.+|+||||||+.++..+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 346799999999999999999999876
No 340
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=94.36 E-value=0.14 Score=57.55 Aligned_cols=45 Identities=27% Similarity=0.197 Sum_probs=33.3
Q ss_pred ccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHH
Q 044579 184 LVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQ 228 (1103)
Q Consensus 184 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (1103)
+||....++++.+.+..-...-.-|.|+|..|+||+++|+.+...
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHh
Confidence 467777777766665533333456889999999999999998864
No 341
>PRK08233 hypothetical protein; Provisional
Probab=94.35 E-value=0.033 Score=57.03 Aligned_cols=26 Identities=31% Similarity=0.515 Sum_probs=23.1
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHh
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
..+|+|.|.+|+||||+|+.++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 36899999999999999999998753
No 342
>PRK09354 recA recombinase A; Provisional
Probab=94.34 E-value=0.14 Score=57.13 Aligned_cols=51 Identities=24% Similarity=0.180 Sum_probs=39.4
Q ss_pred hHHHHHHhhc-ccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEE
Q 044579 190 RIEEMKSLLC-LESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMA 240 (1103)
Q Consensus 190 ~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 240 (1103)
-...|..+|. .+-+.-+++-|+|++|+||||||.+++......-..++|+.
T Consensus 44 Gi~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId 95 (349)
T PRK09354 44 GSLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 95 (349)
T ss_pred CcHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 3455666675 44455689999999999999999999887766666677776
No 343
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.33 E-value=0.037 Score=53.99 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=21.0
Q ss_pred EEEEeecCCChhHHHHHHHHHHHh
Q 044579 207 IVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
+|.+.|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999987643
No 344
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.32 E-value=0.13 Score=60.38 Aligned_cols=51 Identities=24% Similarity=0.180 Sum_probs=38.0
Q ss_pred hHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEE
Q 044579 190 RIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMA 240 (1103)
Q Consensus 190 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 240 (1103)
-+.++.++|..+-..-.++.|.|.+|+|||||+.+++.....+-..++|+.
T Consensus 65 Gi~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 65 GIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred CcHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 345666777544444579999999999999999999987764444566765
No 345
>PRK00625 shikimate kinase; Provisional
Probab=94.32 E-value=0.033 Score=56.11 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=21.5
Q ss_pred EEEEeecCCChhHHHHHHHHHHHh
Q 044579 207 IVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
.|.|+||+|+||||+|+.+++++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998764
No 346
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=94.32 E-value=0.12 Score=62.05 Aligned_cols=50 Identities=18% Similarity=0.266 Sum_probs=41.0
Q ss_pred CCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHH
Q 044579 180 DLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 180 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
....++|....++++.+.+..-...-..|.|+|..|+|||++|+.+.+.-
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s 234 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAAS 234 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 45679999999998888776444445578899999999999999998753
No 347
>PRK04040 adenylate kinase; Provisional
Probab=94.30 E-value=0.043 Score=56.25 Aligned_cols=25 Identities=28% Similarity=0.595 Sum_probs=23.0
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHh
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
.+|+|+|++|+||||+++.+..++.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999998874
No 348
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.26 E-value=0.13 Score=60.46 Aligned_cols=53 Identities=21% Similarity=0.222 Sum_probs=39.3
Q ss_pred chhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEE
Q 044579 188 NTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMA 240 (1103)
Q Consensus 188 ~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 240 (1103)
..-+.++.++|..+-..-.++.|.|.+|+|||||+.+++.....+-..++|+.
T Consensus 77 ~TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 77 SSGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred ccCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 34456677777544445679999999999999999999887665544566765
No 349
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=94.26 E-value=0.096 Score=55.76 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=25.9
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhccC
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISRHF 233 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 233 (1103)
...++|||.+|.|||-+|++|+..+.-.|
T Consensus 166 Pkg~ll~GppGtGKTlla~~Vaa~mg~nf 194 (388)
T KOG0651|consen 166 PKGLLLYGPPGTGKTLLARAVAATMGVNF 194 (388)
T ss_pred CceeEEeCCCCCchhHHHHHHHHhcCCce
Confidence 56899999999999999999999876665
No 350
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.25 E-value=0.17 Score=55.53 Aligned_cols=37 Identities=14% Similarity=0.039 Sum_probs=29.0
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHHHhcc-CCceEEEE
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQISRH-FQGKCFMA 240 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~ 240 (1103)
...++.|.|.+|+||||+|.+++.....+ -..++|+.
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS 66 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS 66 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE
Confidence 34588999999999999999998876544 34566664
No 351
>CHL00206 ycf2 Ycf2; Provisional
Probab=94.22 E-value=0.46 Score=62.89 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=22.8
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHHH
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
..+=|.++|++|.|||.||+++|...
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhc
Confidence 35678899999999999999999864
No 352
>PRK14527 adenylate kinase; Provisional
Probab=94.22 E-value=0.076 Score=54.84 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=22.9
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHHH
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
...+|.|.|.+|+||||+|+.+++++
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998765
No 353
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.19 E-value=0.017 Score=35.92 Aligned_cols=20 Identities=60% Similarity=0.996 Sum_probs=11.6
Q ss_pred CCCEEeCCCCCccccCcccc
Q 044579 811 SLQWLDLSGNNFESLPSSIK 830 (1103)
Q Consensus 811 ~L~~L~Ls~n~l~~lp~~i~ 830 (1103)
+|++|+|++|+|+.+|.+++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 35566666666666665543
No 354
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.19 E-value=0.08 Score=52.69 Aligned_cols=124 Identities=16% Similarity=0.215 Sum_probs=63.9
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHHHHHHhhhCCCCccccccchH-HHHHhhcC
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQ-NIKKRLQR 284 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~-~l~~~L~~ 284 (1103)
.+++|.|..|.|||||++.++..+. ...+.+++.... .. ...... ....+. -..+....+... .+...+..
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~-~~~G~i~~~~~~-~~-~~~~~~----~~~~i~-~~~qlS~G~~~r~~l~~~l~~ 97 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK-PTSGEILIDGKD-IA-KLPLEE----LRRRIG-YVPQLSGGQRQRVALARALLL 97 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCEE-cc-cCCHHH----HHhceE-EEeeCCHHHHHHHHHHHHHhc
Confidence 5899999999999999999987543 345556554210 00 000011 000000 000011111122 55666667
Q ss_pred CceEEEEeCCCCCH--hHHHHHhCCCCc-cCCCcEEEEEeCchhhHhhcCcceEEEc
Q 044579 285 VKVLIVLDDVNDEF--TQLESLAGGVDR-FSPGSRIVITTRDKQVLDKCGVSYIYKV 338 (1103)
Q Consensus 285 k~~LlVLDdv~~~~--~~l~~l~~~~~~-~~~gs~IIiTTR~~~v~~~~~~~~~~~l 338 (1103)
.+-++++|+..... .....+...+.. ...+..+|++|.+....... .++++.+
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~-~d~i~~l 153 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA-ADRVIVL 153 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 78899999984322 222222222211 12356788888887665543 2344444
No 355
>PRK06217 hypothetical protein; Validated
Probab=94.15 E-value=0.16 Score=51.89 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=21.2
Q ss_pred EEEEeecCCChhHHHHHHHHHHH
Q 044579 207 IVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
.|.|.|.+|.||||+|+++..++
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999875
No 356
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.13 E-value=0.049 Score=57.04 Aligned_cols=28 Identities=39% Similarity=0.579 Sum_probs=24.4
Q ss_pred CCeEEEEEeecCCChhHHHHHHHHHHHh
Q 044579 203 HDVRIVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
+...+|+|.|.+|+||||||+.++..+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457999999999999999999998654
No 357
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.11 E-value=0.14 Score=57.17 Aligned_cols=29 Identities=24% Similarity=0.406 Sum_probs=25.7
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHHHhcc
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQISRH 232 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (1103)
...+++++|++|+||||++..++..++.+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46899999999999999999999877654
No 358
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.10 E-value=0.14 Score=55.67 Aligned_cols=97 Identities=19% Similarity=0.223 Sum_probs=55.2
Q ss_pred HHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHHHHHHhhhCCCCccc
Q 044579 191 IEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRDEVISQVLGENLKIG 270 (1103)
Q Consensus 191 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 270 (1103)
++.+..++. ....+|.|.|..|.||||+++++...+...-...+.+.+..+..- .++ .+..-. ...
T Consensus 69 ~~~l~~~~~---~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~-~~~--------~q~~v~--~~~ 134 (264)
T cd01129 69 LEIFRKLLE---KPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI-PGI--------NQVQVN--EKA 134 (264)
T ss_pred HHHHHHHHh---cCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC-CCc--------eEEEeC--CcC
Confidence 344555543 223589999999999999999998876542223444443222110 010 010000 001
Q ss_pred cccchHHHHHhhcCCceEEEEeCCCCCHhHHH
Q 044579 271 TLIVPQNIKKRLQRVKVLIVLDDVNDEFTQLE 302 (1103)
Q Consensus 271 ~~~~~~~l~~~L~~k~~LlVLDdv~~~~~~l~ 302 (1103)
.......++..|+..+=.++++++. +.+...
T Consensus 135 ~~~~~~~l~~~lR~~PD~i~vgEiR-~~e~a~ 165 (264)
T cd01129 135 GLTFARGLRAILRQDPDIIMVGEIR-DAETAE 165 (264)
T ss_pred CcCHHHHHHHHhccCCCEEEeccCC-CHHHHH
Confidence 1122237888888889999999998 555443
No 359
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.10 E-value=0.2 Score=56.60 Aligned_cols=36 Identities=19% Similarity=0.319 Sum_probs=27.8
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhccCC--ceEEEE
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISRHFQ--GKCFMA 240 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~--~~~~~~ 240 (1103)
..+++++|+.|+||||++.+++.+...++. .+.++.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit 174 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLT 174 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 468999999999999999999987654442 344443
No 360
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=94.09 E-value=0.049 Score=64.15 Aligned_cols=53 Identities=25% Similarity=0.390 Sum_probs=43.3
Q ss_pred CCccccchhHHHHHHhhc----ccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCC
Q 044579 182 DGLVGLNTRIEEMKSLLC----LESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQ 234 (1103)
Q Consensus 182 ~~~vGr~~~~~~l~~~L~----~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 234 (1103)
.+-+|+++-.+++.+.+. .++..-++++.+|++|+|||.+|+.++..+-..|-
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFf 467 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFF 467 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceE
Confidence 346899998888888876 23445689999999999999999999998766663
No 361
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=94.04 E-value=0.48 Score=60.49 Aligned_cols=226 Identities=12% Similarity=0.101 Sum_probs=107.0
Q ss_pred EEEEeecCCChhHHHHHHHHHHHhccC----CceEEEEe--chhhhcccChHHHHHHHHHhhhCCCCccccccchHHHHH
Q 044579 207 IVGIWGMGGIGKTTIASVVFHQISRHF----QGKCFMAN--VREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKK 280 (1103)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~~~F----~~~~~~~~--~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~ 280 (1103)
-+.|+|.+|.||||....++-....+. +..+++.. .... ....-.......+............ ......+
T Consensus 224 ~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~-~~~~~q~~~~~~l~~~~~~~~~~~~--~~~~~~e 300 (824)
T COG5635 224 KLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALA-RKFEKQLSLIDYLAEELFSQGIAKQ--LIEAHQE 300 (824)
T ss_pred heeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHh-hhhHhhccHHHHHHHHHhccCCcch--hhHHHHH
Confidence 688999999999999999987543322 12233321 1110 0000000111222222211111111 0112246
Q ss_pred hhcCCceEEEEeCCCCCHhH------HHHHhCCCCccCCCcEEEEEeCchhhHhhcCcceEEEccCCChhHHHHHHH---
Q 044579 281 RLQRVKVLIVLDDVNDEFTQ------LESLAGGVDRFSPGSRIVITTRDKQVLDKCGVSYIYKVKRLEHDNALELFC--- 351 (1103)
Q Consensus 281 ~L~~k~~LlVLDdv~~~~~~------l~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~~l~~L~~~ea~~Lf~--- 351 (1103)
.+...++++.+|.++. ... ...+...+++ -+.+++|+|+|....-.........++..+.++.-.+...
T Consensus 301 ~l~~g~~llLlDGlDe-~~~~~~~~~~~~i~~f~~~-~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~~~~~ 378 (824)
T COG5635 301 LLKTGKLLLLLDGLDE-LEPKNQRALIREINKFLQE-YPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFILYQW 378 (824)
T ss_pred HHhccchhhHhhccch-hhhhhHHHHHHHHHHHhhh-ccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHHHHHH
Confidence 7888999999999973 221 1121111222 3688999999976543333334455666665554332222
Q ss_pred --Hh---hhccCCCC-hhH----HHHHHHHHHHhCCChhHHHHHHhhcC------CCCHHHHHHHHHHhhhcCCcchhhH
Q 044579 352 --RK---AIRQNSRS-QDL----LELSKEIVGYAKGNPLALEVLGSSLY------QKSKQQWKVKLQNLKLISEPNIYNV 415 (1103)
Q Consensus 352 --~~---a~~~~~~~-~~~----~~~~~~i~~~~~G~PLal~~lg~~L~------~~~~~~w~~~l~~l~~~~~~~i~~~ 415 (1103)
.. .++..... ..+ ..-..+.++.....|++|.+.+..-. ....+-++.+++.+-...+..=...
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~~~~~d~~~~~~ 458 (824)
T COG5635 379 LDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDALLGREDETRGIK 458 (824)
T ss_pred HHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHHHhccchhhhhc
Confidence 11 11111111 001 11122344445788999888874332 2345556666665544332221222
Q ss_pred HHhhhcCCC-HHHHH-HHhhhhcc
Q 044579 416 LKISYDDLN-PEEKK-IFLDIACF 437 (1103)
Q Consensus 416 l~~sy~~L~-~~~k~-~fl~~a~f 437 (1103)
+...|+.+. ++..+ ++..+|.+
T Consensus 459 ~~~~~~~~~~~~~~~~l~~~la~~ 482 (824)
T COG5635 459 WSKTYAKLTTDQQDKWLLQLLAAL 482 (824)
T ss_pred chhhhcccchHHHHHHHHHHHHHH
Confidence 344455543 33333 55555543
No 362
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.99 E-value=0.15 Score=51.85 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=25.5
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhccCCceEEE
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFM 239 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 239 (1103)
-.+++|.|..|.|||||++.++-.. ....+.+.+
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~ 59 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGLE-EPDSGSILI 59 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEE
Confidence 3589999999999999999998533 233455554
No 363
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=93.98 E-value=0.28 Score=53.07 Aligned_cols=48 Identities=23% Similarity=0.221 Sum_probs=38.1
Q ss_pred HHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEE
Q 044579 193 EMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMA 240 (1103)
Q Consensus 193 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 240 (1103)
.|..+|..+-+.-+++-|+|+.|.||||+|.+++-.....-..++|+.
T Consensus 48 ~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fID 95 (279)
T COG0468 48 ALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFID 95 (279)
T ss_pred hHHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEe
Confidence 344555444455789999999999999999999987777777888987
No 364
>PRK14529 adenylate kinase; Provisional
Probab=93.97 E-value=0.14 Score=53.68 Aligned_cols=91 Identities=20% Similarity=0.158 Sum_probs=49.2
Q ss_pred EEEeecCCChhHHHHHHHHHHHhccC-CceEEEEechhh-hcccChHHHHHHHHHhhhCCCCccccccchHHHHHhhcCC
Q 044579 208 VGIWGMGGIGKTTIASVVFHQISRHF-QGKCFMANVREK-ANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRV 285 (1103)
Q Consensus 208 v~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~-~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k 285 (1103)
|.|.|++|+||||+|+.++.++.-.+ ...-. +++. .....+....+ +......-..+......+.+++.+.
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~is~gdl---lr~~i~~~t~lg~~i~----~~i~~G~lvpdei~~~lv~~~l~~~ 75 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHIESGAI---FREHIGGGTELGKKAK----EYIDRGDLVPDDITIPMILETLKQD 75 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCcccchh---hhhhccCCChHHHHHH----HHHhccCcchHHHHHHHHHHHHhcc
Confidence 77899999999999999998764222 11111 1111 11111222222 2222222222222333566666432
Q ss_pred -ceEEEEeCCCCCHhHHHHHh
Q 044579 286 -KVLIVLDDVNDEFTQLESLA 305 (1103)
Q Consensus 286 -~~LlVLDdv~~~~~~l~~l~ 305 (1103)
.-=+|||+.-.+..|.+.|.
T Consensus 76 ~~~g~iLDGfPRt~~Qa~~l~ 96 (223)
T PRK14529 76 GKNGWLLDGFPRNKVQAEKLW 96 (223)
T ss_pred CCCcEEEeCCCCCHHHHHHHH
Confidence 34589999976778877653
No 365
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.96 E-value=0.18 Score=51.05 Aligned_cols=127 Identities=15% Similarity=0.204 Sum_probs=62.8
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHHHHHHhhhCCCCc------------cccc
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRDEVISQVLGENLK------------IGTL 272 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~------------~~~~ 272 (1103)
-.+++|.|..|.|||||++.++-... ...+.+++.... ... .. ....+ -+. ...++.. .+..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~-~~~-~~-~~~~~-~i~-~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLK-PDSGEIKVLGKD-IKK-EP-EEVKR-RIG-YLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEE-ccc-ch-Hhhhc-cEE-EEecCCccccCCcHHHHhhcCHH
Confidence 35899999999999999999886432 234455543210 000 00 00000 000 0000000 0111
Q ss_pred cchH-HHHHhhcCCceEEEEeCCCCCH--hHHHHHhCCCCcc-CCCcEEEEEeCchhhHhhcCcceEEEc
Q 044579 273 IVPQ-NIKKRLQRVKVLIVLDDVNDEF--TQLESLAGGVDRF-SPGSRIVITTRDKQVLDKCGVSYIYKV 338 (1103)
Q Consensus 273 ~~~~-~l~~~L~~k~~LlVLDdv~~~~--~~l~~l~~~~~~~-~~gs~IIiTTR~~~v~~~~~~~~~~~l 338 (1103)
+... .+.+.+..++=++++|+..... ...+.+...+... ..|..||++|.+....... .++++.+
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~-~d~i~~l 168 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERL-CDRVAIL 168 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHh-CCEEEEE
Confidence 1112 5666677888999999974322 1122222211111 2367889999887765432 2344443
No 366
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.93 E-value=0.046 Score=55.46 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=22.7
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHH
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
...|.|+|++|+||||+|++++.++
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999886
No 367
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.93 E-value=0.39 Score=55.91 Aligned_cols=36 Identities=19% Similarity=0.247 Sum_probs=27.1
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHh--ccCCceEEEE
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQIS--RHFQGKCFMA 240 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~--~~F~~~~~~~ 240 (1103)
.++++++|++|+||||++..++.... ..-..+.++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALIT 258 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 46899999999999999999988765 3333445554
No 368
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.89 E-value=0.59 Score=54.83 Aligned_cols=28 Identities=21% Similarity=0.349 Sum_probs=24.2
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhcc
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISRH 232 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (1103)
..+++|+|.+|+||||++..++..+..+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 5799999999999999999998876544
No 369
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.88 E-value=0.068 Score=50.86 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=22.6
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHH
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
..+|.+.|.-|.||||+++.++..+
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4589999999999999999999865
No 370
>PRK14530 adenylate kinase; Provisional
Probab=93.86 E-value=0.2 Score=52.87 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=21.1
Q ss_pred EEEEeecCCChhHHHHHHHHHHH
Q 044579 207 IVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
.|.|.|++|+||||+|+.++..+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998875
No 371
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.85 E-value=0.063 Score=58.15 Aligned_cols=36 Identities=14% Similarity=0.227 Sum_probs=29.8
Q ss_pred CCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceE
Q 044579 202 SHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKC 237 (1103)
Q Consensus 202 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~ 237 (1103)
..++.+|.|.|.+|.|||||+..+...+.......+
T Consensus 101 ~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~V 136 (290)
T PRK10463 101 ARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAV 136 (290)
T ss_pred hcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEE
Confidence 346889999999999999999999998876654333
No 372
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.80 E-value=0.25 Score=58.72 Aligned_cols=156 Identities=19% Similarity=0.240 Sum_probs=86.6
Q ss_pred CCCCccccchhHHHHHHhhc---c-------cCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhccc
Q 044579 180 DLDGLVGLNTRIEEMKSLLC---L-------ESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKM 249 (1103)
Q Consensus 180 ~~~~~vGr~~~~~~l~~~L~---~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 249 (1103)
...+.-|.++..+++.+.+. . +..-++=|.++|++|.|||.||++++-...-.|-.. |.
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~i---------SG-- 216 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSI---------SG-- 216 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceec---------cc--
Confidence 34567788888777766654 1 112356789999999999999999997643333111 00
Q ss_pred ChHHHHHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCC--------------CHh-HHHHHhCCCCccCCC
Q 044579 250 GVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVND--------------EFT-QLESLAGGVDRFSPG 314 (1103)
Q Consensus 250 ~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~--------------~~~-~l~~l~~~~~~~~~g 314 (1103)
.+......+ .+.........+..++-++++++|.+|. +.+ .+..+....+.++..
T Consensus 217 ------S~FVemfVG----vGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~ 286 (596)
T COG0465 217 ------SDFVEMFVG----VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGN 286 (596)
T ss_pred ------hhhhhhhcC----CCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCC
Confidence 001111111 1111111133344455678999998752 111 255566666666533
Q ss_pred c--EEEEEeCchhhHh-----hcCcceEEEccCCChhHHHHHHHHhhhc
Q 044579 315 S--RIVITTRDKQVLD-----KCGVSYIYKVKRLEHDNALELFCRKAIR 356 (1103)
Q Consensus 315 s--~IIiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 356 (1103)
. .|+-.|-.++|+. .-+.++.+.|+..+...-.+.+.-|+-.
T Consensus 287 ~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~ 335 (596)
T COG0465 287 EGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKN 335 (596)
T ss_pred CceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhc
Confidence 3 3333333333332 2245667778887777788888766633
No 373
>PRK14526 adenylate kinase; Provisional
Probab=93.79 E-value=0.18 Score=52.75 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=19.7
Q ss_pred EEEeecCCChhHHHHHHHHHHH
Q 044579 208 VGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 208 v~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
++|.|++|+||||+|+.++..+
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNEL 24 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999988764
No 374
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.79 E-value=0.051 Score=55.92 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=23.2
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHHH
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
++.+|+|.|++|+||||+|+.++..+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999999764
No 375
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=93.79 E-value=1 Score=52.89 Aligned_cols=74 Identities=19% Similarity=0.245 Sum_probs=49.9
Q ss_pred CccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHh-ccCCceEEEEechhhhcccChHHHHHHHHHh
Q 044579 183 GLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQIS-RHFQGKCFMANVREKANKMGVIHVRDEVISQ 261 (1103)
Q Consensus 183 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 261 (1103)
...|...-...|.+++. +-..-.++.|.|.+|+|||++|..++..+. .+-..++|+. -.....++...++..
T Consensus 173 ~~~gi~tG~~~LD~~~~-G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fS------lEm~~~~l~~Rl~~~ 245 (421)
T TIGR03600 173 ELTGLSTGLPKLDRLTN-GLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFS------LEMSAEQLGERLLAS 245 (421)
T ss_pred CCcceeCCChhHHHHhc-CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEE------CCCCHHHHHHHHHHH
Confidence 35667777777777765 434456899999999999999999997664 3333455553 234555666666655
Q ss_pred hh
Q 044579 262 VL 263 (1103)
Q Consensus 262 l~ 263 (1103)
..
T Consensus 246 ~~ 247 (421)
T TIGR03600 246 KS 247 (421)
T ss_pred Hc
Confidence 43
No 376
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=93.78 E-value=0.27 Score=50.84 Aligned_cols=22 Identities=27% Similarity=0.289 Sum_probs=20.0
Q ss_pred EEEeecCCChhHHHHHHHHHHH
Q 044579 208 VGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 208 v~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
|.|.|++|+||||+|+.++.++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998764
No 377
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.76 E-value=0.085 Score=53.60 Aligned_cols=27 Identities=33% Similarity=0.398 Sum_probs=24.0
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhc
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISR 231 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (1103)
..+++|.|++|+||||+|+.++.....
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 458999999999999999999987754
No 378
>PRK06547 hypothetical protein; Provisional
Probab=93.74 E-value=0.059 Score=54.27 Aligned_cols=27 Identities=33% Similarity=0.314 Sum_probs=23.9
Q ss_pred CCeEEEEEeecCCChhHHHHHHHHHHH
Q 044579 203 HDVRIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
....+|+|.|.+|+||||+|+.++...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999999864
No 379
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=93.73 E-value=0.099 Score=57.73 Aligned_cols=59 Identities=24% Similarity=0.220 Sum_probs=41.5
Q ss_pred CCCCCccccchhHHHH---HHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceE
Q 044579 179 TDLDGLVGLNTRIEEM---KSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKC 237 (1103)
Q Consensus 179 ~~~~~~vGr~~~~~~l---~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~ 237 (1103)
....++||.....+.. .+++..+.-.-+.+.+.|++|.|||+||..++..+..+.+.+.
T Consensus 21 ~~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~ 82 (398)
T PF06068_consen 21 YIADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVS 82 (398)
T ss_dssp SEETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEE
T ss_pred eccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeE
Confidence 3467899998887763 4555544444689999999999999999999999887766443
No 380
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.72 E-value=0.27 Score=54.11 Aligned_cols=29 Identities=21% Similarity=0.313 Sum_probs=24.9
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHHHhcc
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQISRH 232 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (1103)
..++++|+|.+|+||||++..++..+..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 35799999999999999999999876543
No 381
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=93.69 E-value=0.41 Score=47.59 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.0
Q ss_pred eEEEEEeecCCChhHHHHHHHHH
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFH 227 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~ 227 (1103)
...|+++|++|+|||||...+..
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~ 124 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRS 124 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhc
Confidence 34678999999999999999875
No 382
>PRK13947 shikimate kinase; Provisional
Probab=93.68 E-value=0.05 Score=55.01 Aligned_cols=26 Identities=31% Similarity=0.340 Sum_probs=22.5
Q ss_pred EEEEeecCCChhHHHHHHHHHHHhcc
Q 044579 207 IVGIWGMGGIGKTTIASVVFHQISRH 232 (1103)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (1103)
.|.|+|++|+||||+|+.+++++.-.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~ 28 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFG 28 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 48899999999999999999887443
No 383
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.66 E-value=0.1 Score=56.58 Aligned_cols=38 Identities=13% Similarity=0.170 Sum_probs=30.3
Q ss_pred CCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEE
Q 044579 203 HDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMA 240 (1103)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 240 (1103)
..-.++.|.|.+|+||||+|.+++.....+-..++|+.
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 34578999999999999999998876544555677776
No 384
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=93.66 E-value=0.41 Score=49.54 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=19.5
Q ss_pred EEEEeecCCChhHHHHHHHHH
Q 044579 207 IVGIWGMGGIGKTTIASVVFH 227 (1103)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~ 227 (1103)
+++|+|..|.|||||+++++-
T Consensus 24 ~~~i~G~nGsGKStll~al~~ 44 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRW 44 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 889999999999999999874
No 385
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=93.64 E-value=0.15 Score=55.31 Aligned_cols=57 Identities=25% Similarity=0.239 Sum_probs=45.1
Q ss_pred CCCCCCccccchhHHH---HHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCC
Q 044579 178 STDLDGLVGLNTRIEE---MKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQ 234 (1103)
Q Consensus 178 ~~~~~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 234 (1103)
-...+.+||..+..+. +.++...+.-.-+.|.|.|++|.|||+||..+++.+...-+
T Consensus 35 k~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvP 94 (450)
T COG1224 35 KFIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVP 94 (450)
T ss_pred eEcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCC
Confidence 3456789998877765 46666666556789999999999999999999998876544
No 386
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.55 E-value=0.23 Score=51.29 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=21.0
Q ss_pred eEEEEEeecCCChhHHHHHHHHH
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFH 227 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~ 227 (1103)
-.+++|.|..|.|||||++.++-
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999885
No 387
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.55 E-value=0.87 Score=48.32 Aligned_cols=49 Identities=22% Similarity=0.309 Sum_probs=36.4
Q ss_pred CCccccchhHHHHHHhhc----------ccCCCeEEEEEeecCCChhHHHHHHHHHHHh
Q 044579 182 DGLVGLNTRIEEMKSLLC----------LESHDVRIVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 182 ~~~vGr~~~~~~l~~~L~----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
.++-|.+...+.|.+..- ......+-|.++|++|.||+.||++|+...-
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn 191 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN 191 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC
Confidence 456677777777766432 2233467899999999999999999997643
No 388
>PRK14532 adenylate kinase; Provisional
Probab=93.53 E-value=0.2 Score=51.58 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=19.8
Q ss_pred EEEeecCCChhHHHHHHHHHHH
Q 044579 208 VGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 208 v~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
|.|.|++|+||||+|+.++.+.
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7789999999999999998764
No 389
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.52 E-value=0.061 Score=54.64 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=22.8
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHhc
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQISR 231 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (1103)
++|.+.|++|+||||+|+++......
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~ 28 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAE 28 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 58999999999999999999887543
No 390
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=93.51 E-value=7 Score=43.18 Aligned_cols=155 Identities=10% Similarity=0.088 Sum_probs=86.4
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhcc---------CC-ceEEEEechhhhcccChHHHHHHHHHhhhCCCCccccccc
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISRH---------FQ-GKCFMANVREKANKMGVIHVRDEVISQVLGENLKIGTLIV 274 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------F~-~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~ 274 (1103)
.++..++|..|+||+++|+.+.+.+-.. .+ ...++. ..+ ....+.++. ++...+.-..
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d-~~g--~~i~vd~Ir-~l~~~~~~~~-------- 85 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFD-IFD--KDLSKSEFL-SAINKLYFSS-------- 85 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEec-cCC--CcCCHHHHH-HHHHHhccCC--------
Confidence 4677799999999999999999986211 11 111111 000 111111111 2222211100
Q ss_pred hHHHHHhhcCCceEEEEeCCCCC-HhHHHHHhCCCCccCCCcEEEEEeC-chhhHhh-cCcceEEEccCCChhHHHHHHH
Q 044579 275 PQNIKKRLQRVKVLIVLDDVNDE-FTQLESLAGGVDRFSPGSRIVITTR-DKQVLDK-CGVSYIYKVKRLEHDNALELFC 351 (1103)
Q Consensus 275 ~~~l~~~L~~k~~LlVLDdv~~~-~~~l~~l~~~~~~~~~gs~IIiTTR-~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~ 351 (1103)
.-.+++=++|+|+++.. .....++...+...++.+.+|++|. ...+... ......+++.+++.++..+.+.
T Consensus 86 ------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~ 159 (299)
T PRK07132 86 ------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLL 159 (299)
T ss_pred ------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHH
Confidence 00135668888988632 2345667666666677787776664 4444443 3446789999999999988876
Q ss_pred HhhhccCCCChhHHHHHHHHHHHhCCChhHHHHH
Q 044579 352 RKAIRQNSRSQDLLELSKEIVGYAKGNPLALEVL 385 (1103)
Q Consensus 352 ~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l 385 (1103)
... . . .+.+..++..++|.=-|++.+
T Consensus 160 ~~~----~-~---~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 160 SKN----K-E---KEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred HcC----C-C---hhHHHHHHHHcCCHHHHHHHH
Confidence 531 1 1 133555566666532455543
No 391
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=93.51 E-value=0.83 Score=49.01 Aligned_cols=121 Identities=15% Similarity=0.121 Sum_probs=67.1
Q ss_pred CCCCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHH
Q 044579 176 SESTDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVR 255 (1103)
Q Consensus 176 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~ 255 (1103)
.+....+.|+|-..-.+ +..++.......+.+.++|+.|+|||+-++.+++.. ...|+.. .+..+....++
T Consensus 66 ~~~~~~~~~l~tkt~r~-~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s~-----p~~~l~~---~~p~~~a~~~i 136 (297)
T COG2842 66 ALEKLAPDFLETKTVRR-IFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPSN-----PNALLIE---ADPSYTALVLI 136 (297)
T ss_pred ccccccccccccchhHh-HhhhhhhhhhcCceEEEeccccchhHHHHHhhcccC-----ccceeec---CChhhHHHHHH
Confidence 34446678888765422 223333222233489999999999999999988753 2333331 23333444444
Q ss_pred HHHHHhhhCCCCccccccchH-HHHHhhcCCceEEEEeCCCC-CHhHHHHHhCC
Q 044579 256 DEVISQVLGENLKIGTLIVPQ-NIKKRLQRVKVLIVLDDVND-EFTQLESLAGG 307 (1103)
Q Consensus 256 ~~ll~~l~~~~~~~~~~~~~~-~l~~~L~~k~~LlVLDdv~~-~~~~l~~l~~~ 307 (1103)
..+............. ... .+..++++..-+++.|+.+. ....++.+...
T Consensus 137 ~~i~~~~~~~~~~~~~--d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i 188 (297)
T COG2842 137 LIICAAAFGATDGTIN--DLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRI 188 (297)
T ss_pred HHHHHHHhcccchhHH--HHHHHHHHHHccCcceeeeehhhccChHHHHHHHHH
Confidence 4444444433222211 122 55566678888899998762 23345544433
No 392
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.51 E-value=0.083 Score=53.76 Aligned_cols=26 Identities=42% Similarity=0.567 Sum_probs=22.8
Q ss_pred EEEEeecCCChhHHHHHHHHHHHhcc
Q 044579 207 IVGIWGMGGIGKTTIASVVFHQISRH 232 (1103)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (1103)
+|+|.|.+|+||||+|+.+...+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~ 26 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVN 26 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 58999999999999999999877543
No 393
>PRK14531 adenylate kinase; Provisional
Probab=93.45 E-value=0.28 Score=50.13 Aligned_cols=23 Identities=26% Similarity=0.180 Sum_probs=21.0
Q ss_pred EEEEeecCCChhHHHHHHHHHHH
Q 044579 207 IVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
.|.|.|++|+||||+|+.++.++
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999875
No 394
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.44 E-value=0.18 Score=53.04 Aligned_cols=41 Identities=22% Similarity=0.420 Sum_probs=29.3
Q ss_pred HHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhcc
Q 044579 192 EEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRH 232 (1103)
Q Consensus 192 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (1103)
.++.+.+.....+..+|||.|.||.|||||..++...+..+
T Consensus 16 ~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 16 RELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp HHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 33444444444567899999999999999999999877654
No 395
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.42 E-value=0.062 Score=54.47 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=23.4
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHh
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
..+|+|-||=|+||||||+.+++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 36899999999999999999998765
No 396
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.42 E-value=0.11 Score=53.90 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=29.2
Q ss_pred CCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEE
Q 044579 203 HDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMA 240 (1103)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 240 (1103)
+...+|+|.|++|+||||||+.+...+...-...+++.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld 59 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLD 59 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 34579999999999999999999987754433455553
No 397
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=93.41 E-value=0.45 Score=52.16 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=21.8
Q ss_pred CCCeEEEEEeecCCChhHHHHHHHH
Q 044579 202 SHDVRIVGIWGMGGIGKTTIASVVF 226 (1103)
Q Consensus 202 ~~~~~vv~I~G~gGiGKTtLA~~v~ 226 (1103)
.+++..|.+.|.+|.|||.||.+..
T Consensus 242 d~dI~lV~L~G~AGtGKTlLALaAg 266 (436)
T COG1875 242 DDDIDLVSLGGKAGTGKTLLALAAG 266 (436)
T ss_pred CCCCCeEEeeccCCccHhHHHHHHH
Confidence 4678999999999999999987755
No 398
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=93.41 E-value=0.5 Score=47.04 Aligned_cols=52 Identities=13% Similarity=0.318 Sum_probs=36.0
Q ss_pred HHHHhhcCCceEEEEeC----CCCCHhHHHH--HhCCCCccCCCcEEEEEeCchhhHhhcC
Q 044579 277 NIKKRLQRVKVLIVLDD----VNDEFTQLES--LAGGVDRFSPGSRIVITTRDKQVLDKCG 331 (1103)
Q Consensus 277 ~l~~~L~~k~~LlVLDd----v~~~~~~l~~--l~~~~~~~~~gs~IIiTTR~~~v~~~~~ 331 (1103)
.|.+.+-+++-+|+-|. +| ....|+- +...++ ..|..||++|-+.++...+.
T Consensus 147 aIARAiV~~P~vLlADEPTGNLD-p~~s~~im~lfeein--r~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 147 AIARAIVNQPAVLLADEPTGNLD-PDLSWEIMRLFEEIN--RLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHccCCCeEeecCCCCCCC-hHHHHHHHHHHHHHh--hcCcEEEEEeccHHHHHhcc
Confidence 67777888999999995 44 3333332 233332 46999999999999877654
No 399
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.36 E-value=0.52 Score=58.61 Aligned_cols=101 Identities=10% Similarity=0.195 Sum_probs=65.2
Q ss_pred CccccchhHHHHHHhhccc-----C-CCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHH
Q 044579 183 GLVGLNTRIEEMKSLLCLE-----S-HDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRD 256 (1103)
Q Consensus 183 ~~vGr~~~~~~l~~~L~~~-----~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~ 256 (1103)
.++|.++-+..|.+.+... . ...-.+.+.|+.|+|||-||++++..+-+..+..+-+. +...++
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriD----------mse~~e 632 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLD----------MSEFQE 632 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEec----------hhhhhh
Confidence 4667777777776665521 1 13557789999999999999999998855555444332 222222
Q ss_pred HHHHhhhCCCCccccccchHHHHHhhcCCce-EEEEeCCC
Q 044579 257 EVISQVLGENLKIGTLIVPQNIKKRLQRVKV-LIVLDDVN 295 (1103)
Q Consensus 257 ~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~-LlVLDdv~ 295 (1103)
.+++.+..........+..+-+.++++++ +|.||||+
T Consensus 633 --vskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIE 670 (898)
T KOG1051|consen 633 --VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIE 670 (898)
T ss_pred --hhhccCCCcccccchhHHHHHHHHhcCCceEEEEechh
Confidence 44555554444333444477888887775 66789997
No 400
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=93.34 E-value=2.2 Score=47.61 Aligned_cols=48 Identities=27% Similarity=0.190 Sum_probs=32.7
Q ss_pred EEEccCCChhHHHHHHHHhhhccCCCC-hhHHHHHHHHHHHhCCChhHH
Q 044579 335 IYKVKRLEHDNALELFCRKAIRQNSRS-QDLLELSKEIVGYAKGNPLAL 382 (1103)
Q Consensus 335 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~G~PLal 382 (1103)
.++|++++.+|+..++..++-.+-... ...+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999988774332222 222334555555669999654
No 401
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=93.34 E-value=0.16 Score=51.54 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=23.2
Q ss_pred EEEEeecCCChhHHHHHHHHHHHhcc
Q 044579 207 IVGIWGMGGIGKTTIASVVFHQISRH 232 (1103)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (1103)
++.+.|++|+||||+++.++..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 67899999999999999999887665
No 402
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=93.30 E-value=2.4 Score=50.67 Aligned_cols=47 Identities=19% Similarity=0.274 Sum_probs=37.5
Q ss_pred CCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHH
Q 044579 182 DGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQ 228 (1103)
Q Consensus 182 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (1103)
..++|....+.++.+.+..-...-..|.|.|.+|+|||++|+.+...
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 56899998888887766543344456889999999999999998874
No 403
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.25 E-value=0.21 Score=47.52 Aligned_cols=84 Identities=19% Similarity=0.277 Sum_probs=32.7
Q ss_pred echHhhhcCcccceEEEecCCCCCccccCcceecCCCcccCCCceEEEEEcCCCCCCCCCcc--cccccccccccccccc
Q 044579 532 LSSQAFANMSNLRLLKFYMPERGGVPIMSSKVHLDQGLEDLPEKLRYLHWHGYPLKTLPFDF--ELENLIELRLPYSKVE 609 (1103)
Q Consensus 532 ~~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~--~l~~L~~L~L~~n~i~ 609 (1103)
+...+|.++++|+.+.+..+ ...+....+....+|+.+.+.++ +..++... ...+|+.+.+.. .+.
T Consensus 3 i~~~~F~~~~~l~~i~~~~~----------~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~ 70 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPNT----------IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK 70 (129)
T ss_dssp E-TTTTTT-TT--EEEETST------------EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-
T ss_pred ECHHHHhCCCCCCEEEECCC----------eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc
Confidence 45567778878887777421 22333333333335666665553 45444332 333444444433 333
Q ss_pred cccc-ccccCCcceEecCC
Q 044579 610 QIWE-GKKEASKLKSIDLC 627 (1103)
Q Consensus 610 ~l~~-~~~~l~~L~~L~L~ 627 (1103)
.++. .+..+++|+.+++.
T Consensus 71 ~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 71 SIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp EE-TTTTTT-TTECEEEET
T ss_pred ccccccccccccccccccC
Confidence 3322 23334444444443
No 404
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=93.24 E-value=0.24 Score=53.70 Aligned_cols=117 Identities=15% Similarity=0.114 Sum_probs=61.5
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHHHHHHhhhCCCCc-----cccccchHHH
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRDEVISQVLGENLK-----IGTLIVPQNI 278 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-----~~~~~~~~~l 278 (1103)
+...++|.|..|.|||||.+.++..+... .+.+++... .+.......++.. ....+...... ..+......+
T Consensus 110 ~~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g~-~v~~~d~~~ei~~-~~~~~~q~~~~~r~~v~~~~~k~~~~ 186 (270)
T TIGR02858 110 RVLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRGK-KVGIVDERSEIAG-CVNGVPQHDVGIRTDVLDGCPKAEGM 186 (270)
T ss_pred CeeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECCE-EeecchhHHHHHH-HhcccccccccccccccccchHHHHH
Confidence 35789999999999999999999766543 333443210 0000000011111 11111111100 0010111122
Q ss_pred HHhh-cCCceEEEEeCCCCCHhHHHHHhCCCCccCCCcEEEEEeCchhhH
Q 044579 279 KKRL-QRVKVLIVLDDVNDEFTQLESLAGGVDRFSPGSRIVITTRDKQVL 327 (1103)
Q Consensus 279 ~~~L-~~k~~LlVLDdv~~~~~~l~~l~~~~~~~~~gs~IIiTTR~~~v~ 327 (1103)
...+ ...+=++++|.+- ..+.+..+.... ..|..||+||-+..+.
T Consensus 187 ~~~i~~~~P~villDE~~-~~e~~~~l~~~~---~~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 187 MMLIRSMSPDVIVVDEIG-REEDVEALLEAL---HAGVSIIATAHGRDVE 232 (270)
T ss_pred HHHHHhCCCCEEEEeCCC-cHHHHHHHHHHH---hCCCEEEEEechhHHH
Confidence 2232 3578899999997 555565555443 2578899999976653
No 405
>PRK02496 adk adenylate kinase; Provisional
Probab=93.15 E-value=0.22 Score=51.06 Aligned_cols=23 Identities=30% Similarity=0.314 Sum_probs=20.6
Q ss_pred EEEEeecCCChhHHHHHHHHHHH
Q 044579 207 IVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
.+.|.|++|.||||+|+.++..+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998765
No 406
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=93.13 E-value=0.2 Score=53.62 Aligned_cols=49 Identities=18% Similarity=0.192 Sum_probs=34.8
Q ss_pred HHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhcc------CCceEEEE
Q 044579 192 EEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRH------FQGKCFMA 240 (1103)
Q Consensus 192 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------F~~~~~~~ 240 (1103)
..|.++|..+-..-.++.|+|.+|+|||++|..++...... -..++|+.
T Consensus 6 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~ 60 (235)
T cd01123 6 KALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID 60 (235)
T ss_pred hhhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence 34555555444456799999999999999999998653222 25677776
No 407
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=93.11 E-value=1.9 Score=53.72 Aligned_cols=48 Identities=15% Similarity=0.221 Sum_probs=36.7
Q ss_pred CCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHH
Q 044579 181 LDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQ 228 (1103)
Q Consensus 181 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (1103)
.+.++|....++++.+....-......|.|+|..|+||+++|+++.+.
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~ 371 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNE 371 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHh
Confidence 467899998888776665532223345789999999999999999875
No 408
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.08 E-value=0.14 Score=56.63 Aligned_cols=35 Identities=34% Similarity=0.432 Sum_probs=28.8
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhccCCceEEE
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFM 239 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 239 (1103)
.+++...|.||+||||+|.+.+-+.......+.-+
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlv 36 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLV 36 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEE
Confidence 47899999999999999999888877776554444
No 409
>COG3910 Predicted ATPase [General function prediction only]
Probab=93.04 E-value=0.58 Score=46.43 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=21.3
Q ss_pred CeEEEEEeecCCChhHHHHHHHHH
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFH 227 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~ 227 (1103)
..++..|+|..|+||+||..+++.
T Consensus 36 ~apIT~i~GENGsGKSTLLEaiA~ 59 (233)
T COG3910 36 RAPITFITGENGSGKSTLLEAIAA 59 (233)
T ss_pred cCceEEEEcCCCccHHHHHHHHHh
Confidence 346889999999999999999885
No 410
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.03 E-value=0.18 Score=60.13 Aligned_cols=52 Identities=15% Similarity=0.148 Sum_probs=40.9
Q ss_pred hhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEE
Q 044579 189 TRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMA 240 (1103)
Q Consensus 189 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 240 (1103)
.-+.++.++|..+-..-.++.|.|.+|+||||||.+++.....+-+.++++.
T Consensus 247 tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s 298 (484)
T TIGR02655 247 SGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA 298 (484)
T ss_pred CChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3456777777655556679999999999999999999998766656667765
No 411
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.01 E-value=4.8 Score=45.72 Aligned_cols=28 Identities=25% Similarity=0.376 Sum_probs=25.1
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHHHhc
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQISR 231 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (1103)
...+|..+|.-|.||||.|-.+++.++.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk 126 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKK 126 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHH
Confidence 3678999999999999999999998776
No 412
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.00 E-value=0.15 Score=55.47 Aligned_cols=47 Identities=21% Similarity=0.155 Sum_probs=38.4
Q ss_pred HHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEE
Q 044579 194 MKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMA 240 (1103)
Q Consensus 194 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 240 (1103)
+.+++..+-+.-+++.|+|.+|+|||++|.++..+.......++|+.
T Consensus 12 lD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 12 LDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred hHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 33444444456789999999999999999999998888888888886
No 413
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=92.91 E-value=0.38 Score=48.23 Aligned_cols=79 Identities=13% Similarity=0.165 Sum_probs=43.7
Q ss_pred EEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHHHHHHhhhCCCCccccccchHHHHHhhcC--C
Q 044579 208 VGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQR--V 285 (1103)
Q Consensus 208 v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~--k 285 (1103)
+.|.|.+|+|||++|.+++.. ....+.++.. ....+. +.++.+..........-...+....+.+.+.. +
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at----~~~~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~ 73 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYIAT----AEAFDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKELDP 73 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEEEc----cCcCCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCC
Confidence 678999999999999999865 2345666652 222232 23333322222222222222333355555532 2
Q ss_pred ceEEEEeCC
Q 044579 286 KVLIVLDDV 294 (1103)
Q Consensus 286 ~~LlVLDdv 294 (1103)
.-.+++|.+
T Consensus 74 ~~~VLIDcl 82 (169)
T cd00544 74 GDVVLIDCL 82 (169)
T ss_pred CCEEEEEcH
Confidence 347999987
No 414
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=92.89 E-value=0.071 Score=54.31 Aligned_cols=23 Identities=43% Similarity=0.624 Sum_probs=21.1
Q ss_pred EEEEeecCCChhHHHHHHHHHHH
Q 044579 207 IVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
+|+|.|.+|+||||+|+.++..+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 415
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=92.86 E-value=0.19 Score=53.89 Aligned_cols=50 Identities=18% Similarity=0.163 Sum_probs=37.7
Q ss_pred HHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEE
Q 044579 191 IEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMA 240 (1103)
Q Consensus 191 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 240 (1103)
+..|.++|..+=..-.++.|.|.+|.|||++|.++......+-+.++|+.
T Consensus 7 i~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 7 IPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred cHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 34556666555456689999999999999999998876545556677776
No 416
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=92.86 E-value=0.16 Score=49.22 Aligned_cols=34 Identities=21% Similarity=0.375 Sum_probs=25.6
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHhcc-CCceEEE
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQISRH-FQGKCFM 239 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~ 239 (1103)
++|.|+|..|+|||||++.+.+.+..+ +...++.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik 35 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIK 35 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEE
Confidence 479999999999999999999987644 4433333
No 417
>PRK13949 shikimate kinase; Provisional
Probab=92.86 E-value=0.08 Score=53.32 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=21.7
Q ss_pred EEEEeecCCChhHHHHHHHHHHHh
Q 044579 207 IVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
-|.|+|+.|.||||+|+.++..+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999998764
No 418
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.84 E-value=0.36 Score=55.57 Aligned_cols=41 Identities=29% Similarity=0.392 Sum_probs=32.9
Q ss_pred hhHHHHHHhhc-----ccCCCeEEEEEeecCCChhHHHHHHHHHHH
Q 044579 189 TRIEEMKSLLC-----LESHDVRIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 189 ~~~~~l~~~L~-----~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
+-++++..||. ...-+.+++.|.|++|+||||.++.++..+
T Consensus 89 kKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 89 KKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred HhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh
Confidence 44667777776 444567899999999999999999998754
No 419
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=92.83 E-value=0.24 Score=48.63 Aligned_cols=35 Identities=20% Similarity=0.217 Sum_probs=28.4
Q ss_pred CCeEEEEEeecCCChhHHHHHHHHHHHhccCCceE
Q 044579 203 HDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKC 237 (1103)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~ 237 (1103)
+...+|-+.|.+|.||||||.+++.++..+.-.+.
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y 55 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVY 55 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 34568999999999999999999998876654433
No 420
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.81 E-value=0.24 Score=54.40 Aligned_cols=74 Identities=26% Similarity=0.281 Sum_probs=49.7
Q ss_pred cchHHHHHHHHHHHHHhcccCCCCCCCCCccccchhHHHHHHhhc----------ccCCCeEEEEEeecCCChhHHHHHH
Q 044579 155 RNDAELVEKIVEDISKKLEDMSESTDLDGLVGLNTRIEEMKSLLC----------LESHDVRIVGIWGMGGIGKTTIASV 224 (1103)
Q Consensus 155 ~~e~~~i~~iv~~i~~~l~~~~~~~~~~~~vGr~~~~~~l~~~L~----------~~~~~~~vv~I~G~gGiGKTtLA~~ 224 (1103)
.+++.+++..-.+|..+- +-..=+++.|.++-.+-|++..- .....-+-|.++|++|.|||-||++
T Consensus 189 ~~d~~Lve~lerdIl~~n----p~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKA 264 (491)
T KOG0738|consen 189 GYDADLVEALERDILQRN----PNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKA 264 (491)
T ss_pred cchHHHHHHHHHHHhccC----CCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHH
Confidence 345566666666666553 22333567888777766665432 1123356788999999999999999
Q ss_pred HHHHHhcc
Q 044579 225 VFHQISRH 232 (1103)
Q Consensus 225 v~~~~~~~ 232 (1103)
||..-..-
T Consensus 265 vATEc~tT 272 (491)
T KOG0738|consen 265 VATECGTT 272 (491)
T ss_pred HHHhhcCe
Confidence 99876533
No 421
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=92.77 E-value=0.11 Score=58.84 Aligned_cols=51 Identities=20% Similarity=0.227 Sum_probs=35.5
Q ss_pred CccccchhHHHHHHhhccc------------CCCeEEEEEeecCCChhHHHHHHHHHHHhccC
Q 044579 183 GLVGLNTRIEEMKSLLCLE------------SHDVRIVGIWGMGGIGKTTIASVVFHQISRHF 233 (1103)
Q Consensus 183 ~~vGr~~~~~~l~~~L~~~------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 233 (1103)
.+||.++..+.+...+... ....+.|.++|++|+|||++|++++..+...|
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~f 75 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 75 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 4677777666664433311 11236788999999999999999998875444
No 422
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=92.76 E-value=0.19 Score=56.18 Aligned_cols=109 Identities=14% Similarity=0.129 Sum_probs=58.7
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHHHHHHhhhCC-CCccccccchHHHHHhhc
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRDEVISQVLGE-NLKIGTLIVPQNIKKRLQ 283 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-~~~~~~~~~~~~l~~~L~ 283 (1103)
...++|.|..|.||||+++++...+.... ..+.+.+..+..-.. .....-.... ............+...|+
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~~-~iv~ied~~El~~~~------~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr 216 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKDE-RIITIEDTREIFLPH------PNYVHLFYSKGGQGLAKVTPKDLLQSCLR 216 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCccc-cEEEEcCccccCCCC------CCEEEEEecCCCCCcCccCHHHHHHHHhc
Confidence 35899999999999999999987664432 344444333321110 0000000000 011111222336777788
Q ss_pred CCceEEEEeCCCCCHhHHHHHhCCCCccCCCcE-EEEEeCchh
Q 044579 284 RVKVLIVLDDVNDEFTQLESLAGGVDRFSPGSR-IVITTRDKQ 325 (1103)
Q Consensus 284 ~k~~LlVLDdv~~~~~~l~~l~~~~~~~~~gs~-IIiTTR~~~ 325 (1103)
..+=.+|+|.+. ..+.++.+... . .|.. ++.|+-...
T Consensus 217 ~~pd~ii~gE~r-~~e~~~~l~a~-~---~g~~~~i~T~Ha~~ 254 (308)
T TIGR02788 217 MRPDRIILGELR-GDEAFDFIRAV-N---TGHPGSITTLHAGS 254 (308)
T ss_pred CCCCeEEEeccC-CHHHHHHHHHH-h---cCCCeEEEEEeCCC
Confidence 888899999997 55554433322 1 2332 456665443
No 423
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=92.73 E-value=0.077 Score=55.94 Aligned_cols=24 Identities=42% Similarity=0.559 Sum_probs=22.0
Q ss_pred EEEEeecCCChhHHHHHHHHHHHh
Q 044579 207 IVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
+|||.|..|+||||+|+.+...+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998775
No 424
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=92.73 E-value=0.091 Score=50.65 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=21.7
Q ss_pred EEEEeecCCChhHHHHHHHHHHHh
Q 044579 207 IVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
+|.|.|.+|.||||+|+.+++.+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC
Confidence 688999999999999999998764
No 425
>PTZ00494 tuzin-like protein; Provisional
Probab=92.71 E-value=9.9 Score=43.30 Aligned_cols=205 Identities=14% Similarity=0.090 Sum_probs=112.0
Q ss_pred HHHHHHHHHhcc-------------CCCccCCCCcchHH--HHHHHHHHHHHhccc-----CCCCCCCCCccccchhHHH
Q 044579 134 QKWRHALTEASN-------------LSGYDSTESRNDAE--LVEKIVEDISKKLED-----MSESTDLDGLVGLNTRIEE 193 (1103)
Q Consensus 134 ~~w~~al~~~~~-------------~~g~~~~~~~~e~~--~i~~iv~~i~~~l~~-----~~~~~~~~~~vGr~~~~~~ 193 (1103)
+.||-++++-+. ..||.++++..+.. -++--++...+..++ +..+.....+|.|+.+-..
T Consensus 303 Rd~RY~l~KYsG~vSa~~a~Lgv~svFgwN~knYr~qQRs~Ql~~Av~TLsk~~~~~~~~~~~a~a~~~~~V~R~~eE~~ 382 (664)
T PTZ00494 303 TNFRYALAKYKGTMSCIAGVLVVAYVFTANLRAYRRQQRGHQLRTAIETLSKAARPRKEEGMLAAAAEAFEVRREDEEAL 382 (664)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccccccccccccccchhhHHHH
Confidence 467777655433 23566655443322 222334444444322 1234456789999999888
Q ss_pred HHHhhcc-cCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHHHHHHhhhCCCCccccc
Q 044579 194 MKSLLCL-ESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRDEVISQVLGENLKIGTL 272 (1103)
Q Consensus 194 l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 272 (1103)
+.+.|.. +....|++++.|.-|.||++|.+....+ .--..+|+. ++. .++-++.+.+.+.-...+.-..
T Consensus 383 vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrk---E~~paV~VD-VRg------~EDtLrsVVKALgV~nve~CGD 452 (664)
T PTZ00494 383 VRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRV---EGVALVHVD-VGG------TEDTLRSVVRALGVSNVEVCGD 452 (664)
T ss_pred HHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHH---cCCCeEEEE-ecC------CcchHHHHHHHhCCCChhhhcc
Confidence 8888873 3456899999999999999999987654 223455664 332 2333444555544333222111
Q ss_pred cchH-------HHHHhhcCCceEEEEeCCC-CCHhH----HHHHhCCCCccCCCcEEEEEeCchhhHhh---cCcceEEE
Q 044579 273 IVPQ-------NIKKRLQRVKVLIVLDDVN-DEFTQ----LESLAGGVDRFSPGSRIVITTRDKQVLDK---CGVSYIYK 337 (1103)
Q Consensus 273 ~~~~-------~l~~~L~~k~~LlVLDdv~-~~~~~----l~~l~~~~~~~~~gs~IIiTTR~~~v~~~---~~~~~~~~ 337 (1103)
... .-+....++.-+||+-==+ ++..- .-.|+. .-.-|+|++----+.+-.. ...-..|.
T Consensus 453 -lLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~vaLac----DrRlCHvv~EVplESLT~~n~~LPRLDFy~ 527 (664)
T PTZ00494 453 -LLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVVSLVS----DCQACHIVLAVPMKALTPLNVSSRRLDFYC 527 (664)
T ss_pred -HHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHHHHHc----cchhheeeeechHhhhchhhccCccceeEe
Confidence 111 2222345566666664211 01111 111222 1345777775544433111 12235789
Q ss_pred ccCCChhHHHHHHHHh
Q 044579 338 VKRLEHDNALELFCRK 353 (1103)
Q Consensus 338 l~~L~~~ea~~Lf~~~ 353 (1103)
++.++.++|.++-.+.
T Consensus 528 VPnFSr~QAf~YtqH~ 543 (664)
T PTZ00494 528 IPPFSRRQAFAYAEHT 543 (664)
T ss_pred cCCcCHHHHHHHHhcc
Confidence 9999999999887654
No 426
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=92.71 E-value=0.45 Score=49.58 Aligned_cols=60 Identities=20% Similarity=0.398 Sum_probs=34.5
Q ss_pred HHHhhcCCceEEEEeCCCCCH--hHHH-HHhCCCCccC-C-CcEEEEEeCchhhHhhcCcceEEEcc
Q 044579 278 IKKRLQRVKVLIVLDDVNDEF--TQLE-SLAGGVDRFS-P-GSRIVITTRDKQVLDKCGVSYIYKVK 339 (1103)
Q Consensus 278 l~~~L~~k~~LlVLDdv~~~~--~~l~-~l~~~~~~~~-~-gs~IIiTTR~~~v~~~~~~~~~~~l~ 339 (1103)
+.+.+..++-++++|+..... ...+ .+...+.... . |..||++|.+.+.... .+.++.++
T Consensus 132 la~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~--~d~i~~l~ 196 (204)
T cd03240 132 LAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA--ADHIYRVE 196 (204)
T ss_pred HHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh--CCEEEEEe
Confidence 344566788999999984322 2222 3322222222 2 6678888888876543 45666654
No 427
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=92.70 E-value=0.083 Score=51.77 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=21.1
Q ss_pred EEEEeecCCChhHHHHHHHHHHH
Q 044579 207 IVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
+|.|.|.+|+||||+|+.++.+.
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999875
No 428
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=92.70 E-value=0.13 Score=53.55 Aligned_cols=32 Identities=25% Similarity=0.272 Sum_probs=26.8
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHHHhccCCc
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQISRHFQG 235 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~ 235 (1103)
....+.++||+|.||||..++++..+..++..
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~p 49 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTP 49 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCC
Confidence 35678899999999999999999887776653
No 429
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=92.70 E-value=0.3 Score=60.35 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.5
Q ss_pred eEEEEEeecCCChhHHHHHHHHH
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFH 227 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~ 227 (1103)
-..|+|+|..|+||||||+.+..
T Consensus 499 Ge~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 499 GEKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35799999999999999998874
No 430
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=92.68 E-value=0.96 Score=47.30 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=21.2
Q ss_pred eEEEEEeecCCChhHHHHHHHHHH
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQ 228 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~ 228 (1103)
-.+++|.|..|.|||||++.++--
T Consensus 34 G~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 34 GEKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 358999999999999999998853
No 431
>PHA02244 ATPase-like protein
Probab=92.67 E-value=0.26 Score=55.11 Aligned_cols=48 Identities=17% Similarity=0.140 Sum_probs=32.6
Q ss_pred CCCccccchhHHH----HHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhcc
Q 044579 181 LDGLVGLNTRIEE----MKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRH 232 (1103)
Q Consensus 181 ~~~~vGr~~~~~~----l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (1103)
...++|....+.. +..++..+ .-|.|+|.+|+|||+||+++++.....
T Consensus 95 d~~~ig~sp~~~~~~~ri~r~l~~~----~PVLL~GppGtGKTtLA~aLA~~lg~p 146 (383)
T PHA02244 95 DTTKIASNPTFHYETADIAKIVNAN----IPVFLKGGAGSGKNHIAEQIAEALDLD 146 (383)
T ss_pred CCcccCCCHHHHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3456776655543 33444322 247789999999999999999875433
No 432
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=92.66 E-value=0.092 Score=51.97 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=20.4
Q ss_pred EEEeecCCChhHHHHHHHHHHH
Q 044579 208 VGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 208 v~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
|.|+|++|.||||+|+.++..+
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999876
No 433
>PRK13948 shikimate kinase; Provisional
Probab=92.66 E-value=0.093 Score=53.32 Aligned_cols=28 Identities=25% Similarity=0.281 Sum_probs=24.1
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHHHhc
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQISR 231 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (1103)
..+.|.++|+.|+||||+++.++.++..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~ 36 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALML 36 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3568999999999999999999987643
No 434
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=92.66 E-value=0.26 Score=60.79 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=22.0
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHH
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
-..++|+|..|.|||||++.+...+
T Consensus 376 G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 376 GQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999988654
No 435
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=92.66 E-value=0.24 Score=49.85 Aligned_cols=40 Identities=18% Similarity=0.111 Sum_probs=29.3
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHh-ccCCceEEEEechhh
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQIS-RHFQGKCFMANVREK 245 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~~~~~~~~ 245 (1103)
..++.+.|+.|+|||.||+++++.+. ......+- .+..+.
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~-~d~s~~ 43 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIR-IDMSEY 43 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEE-EEGGGH
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHH-Hhhhcc
Confidence 35788999999999999999999876 44444433 344443
No 436
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=92.66 E-value=0.55 Score=46.85 Aligned_cols=34 Identities=24% Similarity=0.096 Sum_probs=25.7
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHhccCCceEEE
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFM 239 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 239 (1103)
.+|-|++-.|-||||.|..++-+...+=-.++.+
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~iv 39 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVI 39 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEE
Confidence 5788888899999999999998765554444333
No 437
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=92.66 E-value=0.39 Score=49.90 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=21.3
Q ss_pred eEEEEEeecCCChhHHHHHHHHHH
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQ 228 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~ 228 (1103)
-.+++|.|..|.|||||.+.++-.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999998864
No 438
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=92.66 E-value=0.53 Score=47.70 Aligned_cols=36 Identities=17% Similarity=0.043 Sum_probs=27.8
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEE
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMA 240 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 240 (1103)
...|.|+|-.|-||||.|..++-+...+=-.+.++.
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQ 57 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQ 57 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 358999999999999999999987655544444444
No 439
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.65 E-value=0.059 Score=31.13 Aligned_cols=16 Identities=56% Similarity=0.792 Sum_probs=5.9
Q ss_pred CCCEEeCCCCCccccC
Q 044579 811 SLQWLDLSGNNFESLP 826 (1103)
Q Consensus 811 ~L~~L~Ls~n~l~~lp 826 (1103)
+|+.|+|++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4445555555544443
No 440
>PRK08506 replicative DNA helicase; Provisional
Probab=92.60 E-value=0.78 Score=54.41 Aligned_cols=74 Identities=18% Similarity=0.203 Sum_probs=50.0
Q ss_pred CccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHHHHHHhh
Q 044579 183 GLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRDEVISQV 262 (1103)
Q Consensus 183 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ll~~l 262 (1103)
...|...-+..|.+++. +-....++.|-|.+|+|||++|..++.....+-..++|+. -.....++...+++..
T Consensus 171 ~~~Gi~TG~~~LD~~~~-G~~~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fS------lEMs~~ql~~Rlla~~ 243 (472)
T PRK08506 171 DIIGLDTGFVELNKMTK-GFNKGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFS------LEMPAEQLMLRMLSAK 243 (472)
T ss_pred CCCcccCChHHHHhhcC-CCCCCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEe------CcCCHHHHHHHHHHHh
Confidence 35567777777777652 3344568999999999999999999987654433455543 2445566666666654
Q ss_pred h
Q 044579 263 L 263 (1103)
Q Consensus 263 ~ 263 (1103)
.
T Consensus 244 s 244 (472)
T PRK08506 244 T 244 (472)
T ss_pred c
Confidence 3
No 441
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=92.57 E-value=0.083 Score=52.09 Aligned_cols=23 Identities=26% Similarity=0.596 Sum_probs=20.2
Q ss_pred EEEEeecCCChhHHHHHHHHHHH
Q 044579 207 IVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
++.|.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 37899999999999999998763
No 442
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=92.57 E-value=0.13 Score=51.46 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=20.8
Q ss_pred EEEeecCCChhHHHHHHHHHHHhc
Q 044579 208 VGIWGMGGIGKTTIASVVFHQISR 231 (1103)
Q Consensus 208 v~I~G~gGiGKTtLA~~v~~~~~~ 231 (1103)
+.|.|.+|+|||||++.+++.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 679999999999999999998754
No 443
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=92.56 E-value=0.077 Score=51.34 Aligned_cols=27 Identities=22% Similarity=0.551 Sum_probs=22.4
Q ss_pred EEEEeecCCChhHHHHHHHHHHHhccC
Q 044579 207 IVGIWGMGGIGKTTIASVVFHQISRHF 233 (1103)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~~~F 233 (1103)
.++|+|+.|+|||||++.++......|
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~~ 27 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNF 27 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCccc
Confidence 378999999999999999998654443
No 444
>PRK05439 pantothenate kinase; Provisional
Probab=92.56 E-value=0.15 Score=56.22 Aligned_cols=30 Identities=33% Similarity=0.403 Sum_probs=25.5
Q ss_pred CCCeEEEEEeecCCChhHHHHHHHHHHHhc
Q 044579 202 SHDVRIVGIWGMGGIGKTTIASVVFHQISR 231 (1103)
Q Consensus 202 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (1103)
.....+|||.|.+|+||||+|+.+...+..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 345789999999999999999999886643
No 445
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.56 E-value=0.079 Score=55.08 Aligned_cols=23 Identities=48% Similarity=0.739 Sum_probs=21.1
Q ss_pred EEEEeecCCChhHHHHHHHHHHH
Q 044579 207 IVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
+|+|.|..|+||||+|+.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998866
No 446
>PRK13946 shikimate kinase; Provisional
Probab=92.53 E-value=0.091 Score=53.82 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=22.7
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHh
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
+.|.+.|+.|+||||+|+.+++++.
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5799999999999999999998873
No 447
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=92.51 E-value=0.097 Score=53.38 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=22.1
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHh
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
.+++|.|+.|+||||+|+.++..+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988653
No 448
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=92.51 E-value=0.14 Score=52.45 Aligned_cols=91 Identities=16% Similarity=0.199 Sum_probs=49.4
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHHHHHHhhh-CCC-Cc-cccccchHHHHHh
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRDEVISQVL-GEN-LK-IGTLIVPQNIKKR 281 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~-~~~-~~-~~~~~~~~~l~~~ 281 (1103)
...++|.|..|.||||+++.+...+... ...+.+.+..+..... .... ++. ... .. .........++..
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~-~~~i~ied~~E~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~l~~~ 96 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPD-ERIITIEDTAELQLPH------PNWV-RLVTRPGNVEGSGEVTMADLLRSA 96 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEECCccccCCCC------CCEE-EEEEecCCCCCCCccCHHHHHHHH
Confidence 3589999999999999999998866533 2333333222211000 0000 000 000 00 1111222366667
Q ss_pred hcCCceEEEEeCCCCCHhHHHHH
Q 044579 282 LQRVKVLIVLDDVNDEFTQLESL 304 (1103)
Q Consensus 282 L~~k~~LlVLDdv~~~~~~l~~l 304 (1103)
++..+=.++++.+. +.+.++.+
T Consensus 97 lR~~pd~i~igEir-~~ea~~~~ 118 (186)
T cd01130 97 LRMRPDRIIVGEVR-GGEALDLL 118 (186)
T ss_pred hccCCCEEEEEccC-cHHHHHHH
Confidence 77778888899997 55555443
No 449
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=92.46 E-value=0.1 Score=51.61 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=23.7
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHhccC
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQISRHF 233 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F 233 (1103)
+-|.++||.|.||||+.++++..+.-.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 3578999999999999999998765554
No 450
>PLN02674 adenylate kinase
Probab=92.44 E-value=0.46 Score=50.55 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=20.8
Q ss_pred EEEEEeecCCChhHHHHHHHHHHH
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
..|.|.|++|+||||+|+.++.++
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~ 55 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEY 55 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Confidence 357799999999999999988764
No 451
>PLN02459 probable adenylate kinase
Probab=92.28 E-value=0.41 Score=51.17 Aligned_cols=94 Identities=21% Similarity=0.186 Sum_probs=49.1
Q ss_pred EEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhh-hcccChHHHHHHHHHhhhCCCCccccccchHHHHHhhcC-
Q 044579 207 IVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREK-ANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQR- 284 (1103)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~-~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~- 284 (1103)
.+.|.|++|+||||+|+.++..+. |....-=.-+++. .....+-. .+........-..+......+++++..
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~~--~~~is~gdllR~ei~~~t~lg~----~i~~~~~~G~lVPdeiv~~ll~~~l~~~ 104 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLLG--VPHIATGDLVREEIKSSGPLGA----QLKEIVNQGKLVPDEIIFSLLSKRLEAG 104 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcEEeCcHHHHHHHhccchhHH----HHHHHHHcCCccCHHHHHHHHHHHHhcc
Confidence 366789999999999999988652 2211100111111 11111111 122222222112222222355666542
Q ss_pred ---CceEEEEeCCCCCHhHHHHHhC
Q 044579 285 ---VKVLIVLDDVNDEFTQLESLAG 306 (1103)
Q Consensus 285 ---k~~LlVLDdv~~~~~~l~~l~~ 306 (1103)
..--+|||+.-.+..|.+.|..
T Consensus 105 ~~~~~~g~iLDGFPRt~~Qa~~Le~ 129 (261)
T PLN02459 105 EEEGESGFILDGFPRTVRQAEILEG 129 (261)
T ss_pred cccCCceEEEeCCCCCHHHHHHHHh
Confidence 3457999999778888877754
No 452
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=92.28 E-value=0.39 Score=59.20 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.0
Q ss_pred eEEEEEeecCCChhHHHHHHHHHH
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQ 228 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~ 228 (1103)
-..++|+|..|.|||||++.+...
T Consensus 361 G~~v~IvG~sGsGKSTLl~lL~gl 384 (588)
T PRK13657 361 GQTVAIVGPTGAGKSTLINLLQRV 384 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999998853
No 453
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.27 E-value=0.081 Score=32.90 Aligned_cols=19 Identities=26% Similarity=0.508 Sum_probs=9.4
Q ss_pred ccEEecCCccceecCcccc
Q 044579 712 ITELNLCDTAIEEVPSSVE 730 (1103)
Q Consensus 712 L~~L~L~~~~i~~lp~~~~ 730 (1103)
|++|+|++|.++.+|++|+
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4455555555555555443
No 454
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=92.24 E-value=0.16 Score=57.75 Aligned_cols=51 Identities=22% Similarity=0.238 Sum_probs=36.5
Q ss_pred CccccchhHHHHHHhhcc---------c---CCCeEEEEEeecCCChhHHHHHHHHHHHhccC
Q 044579 183 GLVGLNTRIEEMKSLLCL---------E---SHDVRIVGIWGMGGIGKTTIASVVFHQISRHF 233 (1103)
Q Consensus 183 ~~vGr~~~~~~l~~~L~~---------~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 233 (1103)
.++|.+...+.+...+.. + ....+.+.++|++|+|||+||+.++..+...|
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~f 78 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 78 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChh
Confidence 477777777777655532 0 01136789999999999999999998765443
No 455
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=92.24 E-value=0.25 Score=52.63 Aligned_cols=49 Identities=20% Similarity=0.091 Sum_probs=35.3
Q ss_pred HHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEE
Q 044579 192 EEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMA 240 (1103)
Q Consensus 192 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 240 (1103)
..|.+++..+=..-.++.|.|.+|.||||+|.+++.....+-..++|+.
T Consensus 7 ~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 7 EGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred hhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 4455555434344579999999999999999998765444555677775
No 456
>PRK06904 replicative DNA helicase; Validated
Probab=92.22 E-value=3 Score=49.40 Aligned_cols=74 Identities=12% Similarity=0.155 Sum_probs=49.1
Q ss_pred CccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhcc-CCceEEEEechhhhcccChHHHHHHHHHh
Q 044579 183 GLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRH-FQGKCFMANVREKANKMGVIHVRDEVISQ 261 (1103)
Q Consensus 183 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 261 (1103)
...|...-...|.+++. +-..-.++.|-|.+|+|||++|..++.....+ -..++|+. -.....++...+++.
T Consensus 200 ~~~Gi~TG~~~LD~~t~-Gl~~G~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fS------lEMs~~ql~~Rlla~ 272 (472)
T PRK06904 200 GVTGVTTGFTDLDKKTA-GLQPSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFS------LEMPAEQIMMRMLAS 272 (472)
T ss_pred CCCCccCChHHHHHHHh-ccCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEe------ccCCHHHHHHHHHHh
Confidence 45666666777766653 33445689999999999999999988766432 23344543 345566677776666
Q ss_pred hh
Q 044579 262 VL 263 (1103)
Q Consensus 262 l~ 263 (1103)
..
T Consensus 273 ~s 274 (472)
T PRK06904 273 LS 274 (472)
T ss_pred hC
Confidence 43
No 457
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=92.22 E-value=0.64 Score=52.33 Aligned_cols=36 Identities=19% Similarity=0.343 Sum_probs=24.8
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHh--ccCCceEEEE
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQIS--RHFQGKCFMA 240 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~--~~F~~~~~~~ 240 (1103)
.++|.++|+.|+||||-..+++.++. ..=..+.++.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiIT 240 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIIT 240 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEE
Confidence 68999999999999965555555443 3333455554
No 458
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=92.21 E-value=0.13 Score=52.64 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=29.5
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhccCCceEEE
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFM 239 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 239 (1103)
.|++.|+|+.|+|||||++.+......+|...+..
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~ 36 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSH 36 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceee
Confidence 36899999999999999999999888888544443
No 459
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=92.18 E-value=0.87 Score=48.84 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=21.0
Q ss_pred EEEEeecCCChhHHHHHHHHHHHh
Q 044579 207 IVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
+..|+|++|+|||+||..++..+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 567899999999999999998654
No 460
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=92.14 E-value=0.51 Score=48.77 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=21.8
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHH
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
-.+++|.|..|.|||||.+.++.-.
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999988643
No 461
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=92.12 E-value=0.15 Score=52.38 Aligned_cols=51 Identities=25% Similarity=0.393 Sum_probs=36.2
Q ss_pred CccccchhHHHHHHhhc-----------ccCCCeEEEEEeecCCChhHHHHHHHHHHHhccC
Q 044579 183 GLVGLNTRIEEMKSLLC-----------LESHDVRIVGIWGMGGIGKTTIASVVFHQISRHF 233 (1103)
Q Consensus 183 ~~vGr~~~~~~l~~~L~-----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 233 (1103)
++=|.+-..+++.+... .+-+..+-|.++|++|.|||.||+++++.....|
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~f 217 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAF 217 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchhe
Confidence 34466666666655433 1224467789999999999999999998766555
No 462
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=92.12 E-value=0.35 Score=51.27 Aligned_cols=51 Identities=16% Similarity=0.253 Sum_probs=34.1
Q ss_pred HHHHhhcCCceEEEEeCC----CC-CHhHHHHHhCCCCccCCCcEEEEEeCchhhHhh
Q 044579 277 NIKKRLQRVKVLIVLDDV----ND-EFTQLESLAGGVDRFSPGSRIVITTRDKQVLDK 329 (1103)
Q Consensus 277 ~l~~~L~~k~~LlVLDdv----~~-~~~~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~ 329 (1103)
.+.+.|..++=|++||.- |. ....+-.+...+. ..|..||++|-|-.....
T Consensus 149 ~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~--~eg~tIl~vtHDL~~v~~ 204 (254)
T COG1121 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELR--QEGKTVLMVTHDLGLVMA 204 (254)
T ss_pred HHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCcHHhHh
Confidence 677888999999999964 31 1222334444433 238999999998866544
No 463
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=92.12 E-value=0.51 Score=54.03 Aligned_cols=22 Identities=36% Similarity=0.617 Sum_probs=19.8
Q ss_pred EEEEEeecCCChhHHHHHHHHH
Q 044579 206 RIVGIWGMGGIGKTTIASVVFH 227 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~ 227 (1103)
-.++|+|+.|.|||||||.+.-
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 4799999999999999998873
No 464
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=92.11 E-value=0.21 Score=49.97 Aligned_cols=29 Identities=21% Similarity=0.344 Sum_probs=25.1
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHHHhcc
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQISRH 232 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (1103)
...+++|+|..|+|||||++.+...+..+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 35689999999999999999999877653
No 465
>PF13245 AAA_19: Part of AAA domain
Probab=92.09 E-value=0.24 Score=42.16 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=17.9
Q ss_pred eEEEEEeecCCChhHHHHH-HHHHHH
Q 044579 205 VRIVGIWGMGGIGKTTIAS-VVFHQI 229 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~-~v~~~~ 229 (1103)
.+++.|.|.+|.|||+++. .+.+-+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578889999999995554 444444
No 466
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=92.06 E-value=0.35 Score=57.55 Aligned_cols=57 Identities=21% Similarity=0.421 Sum_probs=36.8
Q ss_pred HHHHhhcCCceEEEEeCCCC-----CHhHHHHHhCCCCccCCCcEEEEEeCchhhHhhcCcceEEEcc
Q 044579 277 NIKKRLQRVKVLIVLDDVND-----EFTQLESLAGGVDRFSPGSRIVITTRDKQVLDKCGVSYIYKVK 339 (1103)
Q Consensus 277 ~l~~~L~~k~~LlVLDdv~~-----~~~~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~~l~ 339 (1103)
.+.+.|-.++=+|+||.--+ ....++.++.. -+| .+||.|-|+..+..+. ..++++.
T Consensus 163 ~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~----~~g-tviiVSHDR~FLd~V~-t~I~~ld 224 (530)
T COG0488 163 ALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKR----YPG-TVIVVSHDRYFLDNVA-THILELD 224 (530)
T ss_pred HHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh----CCC-cEEEEeCCHHHHHHHh-hheEEec
Confidence 55566677888999997532 23345555543 245 8999999998887643 2344443
No 467
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=92.05 E-value=0.22 Score=54.58 Aligned_cols=126 Identities=15% Similarity=0.144 Sum_probs=66.2
Q ss_pred CCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHHHHHHh
Q 044579 182 DGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRDEVISQ 261 (1103)
Q Consensus 182 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 261 (1103)
+.+.-.....+++.++|...-...+.|.|.|..|.||||+++++...+...-...+-+.+..+..- ..
T Consensus 104 e~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l------------~~ 171 (270)
T PF00437_consen 104 EDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRL------------PG 171 (270)
T ss_dssp CCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--------------SC
T ss_pred hhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceee------------cc
Confidence 334333334455555554332235789999999999999999999877665233333443222110 00
Q ss_pred hhCCCCc--cccccchHHHHHhhcCCceEEEEeCCCCCHhHHHHHhCCCCccCCCcEE-EEEeCch
Q 044579 262 VLGENLK--IGTLIVPQNIKKRLQRVKVLIVLDDVNDEFTQLESLAGGVDRFSPGSRI-VITTRDK 324 (1103)
Q Consensus 262 l~~~~~~--~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~~l~~l~~~~~~~~~gs~I-IiTTR~~ 324 (1103)
....... .........++..|+..+=.+|++.+. +.+..+.+... ..|..+ +-|..-.
T Consensus 172 ~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR-~~e~~~~~~a~----~tGh~~~~tT~Ha~ 232 (270)
T PF00437_consen 172 PNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIR-DPEAAEAIQAA----NTGHLGSLTTLHAN 232 (270)
T ss_dssp SSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE--SCHHHHHHHHH----HTT-EEEEEEEE-S
T ss_pred cceEEEEeecCcccHHHHHHHHhcCCCCcccccccC-CHhHHHHHHhh----ccCCceeeeeeecC
Confidence 0000000 111222337888888888899999997 55555553322 356666 4454433
No 468
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=92.03 E-value=0.62 Score=51.01 Aligned_cols=32 Identities=28% Similarity=0.498 Sum_probs=24.9
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHhccCCceEEE
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFM 239 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 239 (1103)
.+++|+|..|.|||||++.++.-+. ..+.+++
T Consensus 31 e~~~IvG~nGsGKSTLl~~L~gl~~--~~G~I~i 62 (275)
T cd03289 31 QRVGLLGRTGSGKSTLLSAFLRLLN--TEGDIQI 62 (275)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhcC--CCcEEEE
Confidence 4899999999999999999986543 2344444
No 469
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=92.02 E-value=1.2 Score=43.25 Aligned_cols=51 Identities=18% Similarity=0.118 Sum_probs=32.4
Q ss_pred HHHHHHHhhcceEEEEecCCccCchhhHHHHHHHHHhhhcCCcEEEEEEeeeC
Q 044579 55 PALSNAIESSDISIIIFSKGYASSRWCLNELVKILDCKKMNAQIVIPVFYQVD 107 (1103)
Q Consensus 55 ~~~~~~i~~s~~~i~v~S~~y~~s~wc~~El~~~~~~~~~~~~~v~pif~~v~ 107 (1103)
.++.++|++++..++|+......+.+. .++.+.+.... .+..++-|+=+.|
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~-~~l~~~l~~~~-~~k~~iivlNK~D 53 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRP-PDLERYVKEVD-PRKKNILLLNKAD 53 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCC-HHHHHHHHhcc-CCCcEEEEEechh
Confidence 367899999999999998765555442 24555554321 2345666665555
No 470
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=92.02 E-value=0.71 Score=50.23 Aligned_cols=70 Identities=16% Similarity=0.151 Sum_probs=44.7
Q ss_pred hhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccC-CceEEEEechhhhcccChHHHHHHHHHhhhCC
Q 044579 189 TRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHF-QGKCFMANVREKANKMGVIHVRDEVISQVLGE 265 (1103)
Q Consensus 189 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 265 (1103)
.-...|.+.+. +-..-.++.|-|.+|+|||++|..++..+..+- ..+.|+. -.....++...+++...+-
T Consensus 4 TG~~~LD~~lg-G~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~S------lEm~~~~l~~R~la~~s~v 74 (259)
T PF03796_consen 4 TGFPALDRLLG-GLRPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFS------LEMSEEELAARLLARLSGV 74 (259)
T ss_dssp SSTHHHHHHHS-SB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEE------SSS-HHHHHHHHHHHHHTS
T ss_pred CChHHHHHHhc-CCCcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEc------CCCCHHHHHHHHHHHhhcc
Confidence 33455555553 222335888999999999999999999876553 5566654 2445556666776666543
No 471
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=92.01 E-value=0.14 Score=52.88 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=22.5
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHH
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
..+|.|.|.+|+||||+|+.++.+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999874
No 472
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.01 E-value=1.9 Score=51.30 Aligned_cols=151 Identities=18% Similarity=0.243 Sum_probs=79.5
Q ss_pred CccccchhHHHHHHhhcccC-----------CCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccCh
Q 044579 183 GLVGLNTRIEEMKSLLCLES-----------HDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGV 251 (1103)
Q Consensus 183 ~~vGr~~~~~~l~~~L~~~~-----------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~ 251 (1103)
++=|+.+..+.+++.+.... .-..-|.++|++|.|||-||-+++....-+ |+. |. +
T Consensus 668 digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~-----fis-vK------G- 734 (952)
T KOG0735|consen 668 DIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLR-----FIS-VK------G- 734 (952)
T ss_pred ecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCee-----EEE-ec------C-
Confidence 34456555555666554221 123358899999999999999988754333 233 21 1
Q ss_pred HHHHHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCC------------CHhHHHHHhCCCCcc--CCCcEE
Q 044579 252 IHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVND------------EFTQLESLAGGVDRF--SPGSRI 317 (1103)
Q Consensus 252 ~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~------------~~~~l~~l~~~~~~~--~~gs~I 317 (1103)
-+++....|...+ .......+.-..+++++.+|.++. .......++..++.. -.|.-|
T Consensus 735 ----PElL~KyIGaSEq----~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i 806 (952)
T KOG0735|consen 735 ----PELLSKYIGASEQ----NVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYI 806 (952)
T ss_pred ----HHHHHHHhcccHH----HHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEE
Confidence 1344444442211 111133344467899999999863 011234444444321 235555
Q ss_pred EE-EeCchh----hHhhcCcceEEEccCCChhHHHHHHHHhh
Q 044579 318 VI-TTRDKQ----VLDKCGVSYIYKVKRLEHDNALELFCRKA 354 (1103)
Q Consensus 318 Ii-TTR~~~----v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 354 (1103)
+- |||..- ++..-+.++.+.-+.-++.|-+++|...+
T Consensus 807 ~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls 848 (952)
T KOG0735|consen 807 LAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLS 848 (952)
T ss_pred EEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHh
Confidence 54 555332 22222334444445556667777776554
No 473
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.00 E-value=1.2 Score=53.54 Aligned_cols=92 Identities=21% Similarity=0.326 Sum_probs=52.8
Q ss_pred CccccchhHHHHHHhhc----------ccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChH
Q 044579 183 GLVGLNTRIEEMKSLLC----------LESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVI 252 (1103)
Q Consensus 183 ~~vGr~~~~~~l~~~L~----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~ 252 (1103)
++=|.++-..+|.+-+. .+-....=|.+||++|.|||-+|++|+...+=.| +. |. +
T Consensus 673 DVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~F-----lS-VK------G-- 738 (953)
T KOG0736|consen 673 DVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNF-----LS-VK------G-- 738 (953)
T ss_pred cccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeE-----Ee-ec------C--
Confidence 44456655556655443 2222244688999999999999999998754443 33 11 1
Q ss_pred HHHHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCC
Q 044579 253 HVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVN 295 (1103)
Q Consensus 253 ~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~ 295 (1103)
-+++..-.|+. +........+.-..++++|.+|.+|
T Consensus 739 ---PELLNMYVGqS----E~NVR~VFerAR~A~PCVIFFDELD 774 (953)
T KOG0736|consen 739 ---PELLNMYVGQS----EENVREVFERARSAAPCVIFFDELD 774 (953)
T ss_pred ---HHHHHHHhcch----HHHHHHHHHHhhccCCeEEEecccc
Confidence 12333333322 1111123333335679999999987
No 474
>PRK13975 thymidylate kinase; Provisional
Probab=91.98 E-value=0.14 Score=53.17 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=23.5
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHhc
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQISR 231 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (1103)
.+|+|.|+.|+||||+|+.+++++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47999999999999999999998754
No 475
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=91.97 E-value=0.12 Score=50.66 Aligned_cols=20 Identities=35% Similarity=0.665 Sum_probs=18.7
Q ss_pred EEEEeecCCChhHHHHHHHH
Q 044579 207 IVGIWGMGGIGKTTIASVVF 226 (1103)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~ 226 (1103)
.|+|.|.+|+||||+|+.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999887
No 476
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.96 E-value=0.56 Score=48.81 Aligned_cols=26 Identities=19% Similarity=0.265 Sum_probs=22.4
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHh
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
-.+++|.|..|.|||||++.++-...
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CcEEEEECCCCCCHHHHHHHhcccCC
Confidence 35899999999999999999886543
No 477
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=91.96 E-value=0.27 Score=52.55 Aligned_cols=43 Identities=21% Similarity=0.375 Sum_probs=33.1
Q ss_pred HHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCC
Q 044579 192 EEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQ 234 (1103)
Q Consensus 192 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 234 (1103)
.++...+....++..+|||.|.||+|||||.-++...+..+=.
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~ 80 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGH 80 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCc
Confidence 3444455555667889999999999999999999987755543
No 478
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=91.96 E-value=0.2 Score=52.57 Aligned_cols=23 Identities=26% Similarity=0.164 Sum_probs=21.0
Q ss_pred eEEEEEeecCCChhHHHHHHHHH
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFH 227 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~ 227 (1103)
.+.+.|+|..|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999999884
No 479
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=91.92 E-value=0.18 Score=59.98 Aligned_cols=57 Identities=32% Similarity=0.411 Sum_probs=41.2
Q ss_pred CCCccccchhHHHHHHhhcc---cCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEE
Q 044579 181 LDGLVGLNTRIEEMKSLLCL---ESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFM 239 (1103)
Q Consensus 181 ~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 239 (1103)
..+++--.+.++++..||.. +....+++.+.|++|+||||.++.+++.+ .|+..-|.
T Consensus 18 ~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el--g~~v~Ew~ 77 (519)
T PF03215_consen 18 LDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL--GFEVQEWI 77 (519)
T ss_pred HHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh--CCeeEEec
Confidence 34455555677888888763 23346799999999999999999999875 34445554
No 480
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=91.92 E-value=0.18 Score=55.01 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.0
Q ss_pred EEEEEeecCCChhHHHHHHHHHHH
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
+-|.++|+.|+|||++++.+....
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l 57 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSL 57 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCS
T ss_pred CcEEEECCCCCchhHHHHhhhccC
Confidence 567899999999999999988654
No 481
>PRK08840 replicative DNA helicase; Provisional
Probab=91.91 E-value=3.4 Score=48.79 Aligned_cols=73 Identities=11% Similarity=0.145 Sum_probs=47.9
Q ss_pred ccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhc-cCCceEEEEechhhhcccChHHHHHHHHHhh
Q 044579 184 LVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISR-HFQGKCFMANVREKANKMGVIHVRDEVISQV 262 (1103)
Q Consensus 184 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~~~~~~~~~~~~~ll~~l 262 (1103)
..|...-...|..++. +-....++.|-|.+|+|||++|..++..... +-..+.|+. -.....++...+++..
T Consensus 197 ~~gi~TG~~~LD~~~~-G~~~g~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fS------lEMs~~ql~~Rlla~~ 269 (464)
T PRK08840 197 VTGVDTGFTDLNKKTA-GLQGSDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFS------LEMPAEQLMMRMLASL 269 (464)
T ss_pred CCCcCCCcHHHHHhhc-CCCCCceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEe------ccCCHHHHHHHHHHhh
Confidence 5666766666666553 3344568899999999999999988877642 222344443 2455566666666664
Q ss_pred h
Q 044579 263 L 263 (1103)
Q Consensus 263 ~ 263 (1103)
.
T Consensus 270 s 270 (464)
T PRK08840 270 S 270 (464)
T ss_pred C
Confidence 3
No 482
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=91.91 E-value=0.12 Score=52.17 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=22.1
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHh
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
+.|.|+|+.|.||||+|+.++....
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcC
Confidence 4689999999999999999998753
No 483
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=91.89 E-value=0.4 Score=53.20 Aligned_cols=59 Identities=14% Similarity=0.292 Sum_probs=36.0
Q ss_pred HHHHhhcCCceEEEEeCCCCCHhHHH--HHhCCCCcc--CCCcEEEEEeCchhhHhhcCcceE
Q 044579 277 NIKKRLQRVKVLIVLDDVNDEFTQLE--SLAGGVDRF--SPGSRIVITTRDKQVLDKCGVSYI 335 (1103)
Q Consensus 277 ~l~~~L~~k~~LlVLDdv~~~~~~l~--~l~~~~~~~--~~gs~IIiTTR~~~v~~~~~~~~~ 335 (1103)
.|...++.+.-+++.|.+....+..- .++..+... ..|+.+++.|+.+++..+...+..
T Consensus 517 KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~l 579 (593)
T COG2401 517 KLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTL 579 (593)
T ss_pred HHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCcee
Confidence 66677788888999998753222221 122222111 267788888888888877765543
No 484
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=91.87 E-value=0.17 Score=53.98 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=19.8
Q ss_pred EeecCCChhHHHHHHHHHHHhccC
Q 044579 210 IWGMGGIGKTTIASVVFHQISRHF 233 (1103)
Q Consensus 210 I~G~gGiGKTtLA~~v~~~~~~~F 233 (1103)
|.|++|+||||+++.+.+.+..+-
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~ 24 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNG 24 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcc
Confidence 689999999999999998776553
No 485
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=91.85 E-value=0.2 Score=54.38 Aligned_cols=34 Identities=21% Similarity=0.276 Sum_probs=29.3
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHhccCCceEEEE
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMA 240 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 240 (1103)
++++|+|.+|+|||||+..+...++.+. .++.+.
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IK 35 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVK 35 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEE
Confidence 5799999999999999999999988876 555554
No 486
>PRK13768 GTPase; Provisional
Probab=91.85 E-value=0.21 Score=53.93 Aligned_cols=33 Identities=24% Similarity=0.251 Sum_probs=25.5
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHhccCCceEE
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQISRHFQGKCF 238 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~ 238 (1103)
.++.|.|.||+||||++..+....+.+-..++.
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~ 35 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAI 35 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhcCCceEE
Confidence 578999999999999999998876554333333
No 487
>PRK12678 transcription termination factor Rho; Provisional
Probab=91.83 E-value=0.29 Score=57.27 Aligned_cols=89 Identities=20% Similarity=0.203 Sum_probs=48.4
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhccC-CceEEEEechhhhcccChHHHHHHHHHhhhCCCCccccc------cchHH
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISRHF-QGKCFMANVREKANKMGVIHVRDEVISQVLGENLKIGTL------IVPQN 277 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~------~~~~~ 277 (1103)
-+-.+|+|.+|.|||||++.+++.+.... +..+++.-+.+-.. .+..+.+.+-.++.......... ..+..
T Consensus 416 GQR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgERpe--EVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~ 493 (672)
T PRK12678 416 GQRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDERPE--EVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIE 493 (672)
T ss_pred CCEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCchh--hHHHHHHhccceEEEECCCCCHHHHHHHHHHHHH
Confidence 35688999999999999999999775433 44455554443221 12222222211111111110000 01113
Q ss_pred HHHhh--cCCceEEEEeCCC
Q 044579 278 IKKRL--QRVKVLIVLDDVN 295 (1103)
Q Consensus 278 l~~~L--~~k~~LlVLDdv~ 295 (1103)
+-+++ .++.|||++|++-
T Consensus 494 ~Ae~fre~G~dVlillDSlT 513 (672)
T PRK12678 494 RAKRLVELGKDVVVLLDSIT 513 (672)
T ss_pred HHHHHHHcCCCEEEEEeCch
Confidence 33344 6889999999995
No 488
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=91.81 E-value=0.19 Score=51.64 Aligned_cols=33 Identities=21% Similarity=0.102 Sum_probs=26.8
Q ss_pred EEEeecCCChhHHHHHHHHHHHhccCCceEEEE
Q 044579 208 VGIWGMGGIGKTTIASVVFHQISRHFQGKCFMA 240 (1103)
Q Consensus 208 v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 240 (1103)
+.|.|.+|+|||++|.+++......=..++|+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 679999999999999999887655545667765
No 489
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=91.81 E-value=0.31 Score=51.93 Aligned_cols=36 Identities=33% Similarity=0.381 Sum_probs=24.1
Q ss_pred hHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHH
Q 044579 190 RIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 190 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
..+.+...+... .+..|+|++|.||||++..+...+
T Consensus 6 Q~~Ai~~~~~~~----~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 6 QREAIQSALSSN----GITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHHCTSS----E-EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC----CCEEEECCCCCChHHHHHHHHHHh
Confidence 345555555321 278999999999998887777766
No 490
>PRK08006 replicative DNA helicase; Provisional
Probab=91.79 E-value=3.2 Score=49.15 Aligned_cols=72 Identities=13% Similarity=0.155 Sum_probs=47.2
Q ss_pred ccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhc-cCCceEEEEechhhhcccChHHHHHHHHHhh
Q 044579 184 LVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISR-HFQGKCFMANVREKANKMGVIHVRDEVISQV 262 (1103)
Q Consensus 184 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~~~~~~~~~~~~~ll~~l 262 (1103)
..|...-...|..... +-..-.++.|-|.+|+|||++|..++..+.. +-..++|+. -.....++...+++..
T Consensus 204 ~~Gi~TG~~~LD~~~~-Gl~~G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fS------lEM~~~ql~~Rlla~~ 276 (471)
T PRK08006 204 VTGVNTGYDDLNKKTA-GLQPSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFS------LEMPGEQIMMRMLASL 276 (471)
T ss_pred CCcccCCCHHHHHhhc-CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEe------ccCCHHHHHHHHHHHh
Confidence 4566666666666542 3334568899999999999999999887642 222344443 2445566666666654
No 491
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.75 E-value=0.65 Score=47.84 Aligned_cols=60 Identities=22% Similarity=0.310 Sum_probs=35.8
Q ss_pred HHHHhhcCCceEEEEeCCCC--CHhHHHHHhCCCCc-cCCCcEEEEEeCchhhHhhcCcceEE
Q 044579 277 NIKKRLQRVKVLIVLDDVND--EFTQLESLAGGVDR-FSPGSRIVITTRDKQVLDKCGVSYIY 336 (1103)
Q Consensus 277 ~l~~~L~~k~~LlVLDdv~~--~~~~l~~l~~~~~~-~~~gs~IIiTTR~~~v~~~~~~~~~~ 336 (1103)
.+.+.+--++-+.|||..|+ +.+.++.+....+. ..+|+-++|.|-...++.....+.++
T Consensus 154 EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 154 EILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred HHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEE
Confidence 56666667788999998874 23333333222211 13566777777777777766555544
No 492
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.75 E-value=3.7 Score=44.53 Aligned_cols=36 Identities=25% Similarity=0.364 Sum_probs=27.2
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEE
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMA 240 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 240 (1103)
...++++|.+|+||||+++.+...+..+-..+.++.
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~ 110 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFIT 110 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEe
Confidence 469999999999999999999887654323344443
No 493
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=91.71 E-value=0.19 Score=49.67 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=23.4
Q ss_pred EEEEeecCCChhHHHHHHHHHHHhcc
Q 044579 207 IVGIWGMGGIGKTTIASVVFHQISRH 232 (1103)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (1103)
+++|+|+.|+||||++.++...++.+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~ 26 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR 26 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 57899999999999999999987665
No 494
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=91.70 E-value=0.29 Score=52.37 Aligned_cols=50 Identities=16% Similarity=0.071 Sum_probs=36.7
Q ss_pred HHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEE
Q 044579 191 IEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMA 240 (1103)
Q Consensus 191 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 240 (1103)
+..|.++|..+-+.-.++.|+|.+|+|||++|.+++.....+=..++|+.
T Consensus 11 i~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 11 NEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred CHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 44566666555455679999999999999999999775444445566665
No 495
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=91.64 E-value=0.25 Score=50.80 Aligned_cols=35 Identities=29% Similarity=0.488 Sum_probs=26.1
Q ss_pred EEEEeecCCChhHHHHHHHHHHHhccCCceEEEEe
Q 044579 207 IVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMAN 241 (1103)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~ 241 (1103)
.|+|+|-||+||||+|..++.++..+-...+.+.+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVD 36 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVD 36 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEe
Confidence 58999999999999999977766555333444443
No 496
>PRK15453 phosphoribulokinase; Provisional
Probab=91.61 E-value=0.26 Score=53.02 Aligned_cols=28 Identities=25% Similarity=0.369 Sum_probs=24.1
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHHHhc
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQISR 231 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (1103)
...+|+|.|.+|+||||+|+++.+.+..
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~ 31 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRR 31 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4579999999999999999999976643
No 497
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=91.59 E-value=0.2 Score=62.67 Aligned_cols=25 Identities=24% Similarity=0.193 Sum_probs=21.8
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHH
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQ 228 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (1103)
+.++++|.|+.|.||||+.+.+.-.
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHH
Confidence 3478999999999999999998764
No 498
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=91.57 E-value=0.85 Score=50.75 Aligned_cols=50 Identities=12% Similarity=0.161 Sum_probs=34.6
Q ss_pred HHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHh------ccCCceEEEE
Q 044579 191 IEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQIS------RHFQGKCFMA 240 (1103)
Q Consensus 191 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~------~~F~~~~~~~ 240 (1103)
...|.++|..+=..-+++-|+|.+|+|||+||..++-... ..=..++|+.
T Consensus 82 ~~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYId 137 (313)
T TIGR02238 82 SQALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYID 137 (313)
T ss_pred CHHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEE
Confidence 4556666764445567999999999999999998775322 1123567776
No 499
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=91.56 E-value=0.21 Score=44.62 Aligned_cols=25 Identities=32% Similarity=0.640 Sum_probs=22.2
Q ss_pred EEEEeecCCChhHHHHHHHHHHHhc
Q 044579 207 IVGIWGMGGIGKTTIASVVFHQISR 231 (1103)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (1103)
++.+.|.+|+||||++..++..+++
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAK 25 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999998765
No 500
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=91.55 E-value=0.63 Score=53.95 Aligned_cols=89 Identities=17% Similarity=0.281 Sum_probs=50.5
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHHHHHHhhh-CCCC---ccccc--------
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRDEVISQVL-GENL---KIGTL-------- 272 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~-~~~~---~~~~~-------- 272 (1103)
-+-++|.|.+|+|||||+..++.....+...++-+.-+++. ...+.++.++++..-. .... ...+.
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGER--~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGER--TREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccC--cHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 35799999999999999999988766554444444444332 2233444444443211 0000 00111
Q ss_pred -cchHHHHHhh---cCCceEEEEeCCC
Q 044579 273 -IVPQNIKKRL---QRVKVLIVLDDVN 295 (1103)
Q Consensus 273 -~~~~~l~~~L---~~k~~LlVLDdv~ 295 (1103)
..+..+-+++ +++++||++||+-
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~DslT 248 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNIF 248 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecchH
Confidence 0111344544 6789999999995
Done!