Query 044579
Match_columns 1103
No_of_seqs 1099 out of 5950
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 07:47:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044579.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044579hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jrn_A AT1G72930 protein; TIR 100.0 2.1E-48 7.2E-53 381.6 11.4 170 3-174 2-172 (176)
2 3ozi_A L6TR; plant TIR domain, 100.0 1.6E-47 5.4E-52 380.3 12.5 169 6-174 32-202 (204)
3 2a5y_B CED-4; apoptosis; HET: 100.0 2.3E-38 8E-43 382.1 22.3 296 185-491 131-472 (549)
4 3sfz_A APAF-1, apoptotic pepti 100.0 8.3E-33 2.8E-37 370.5 23.6 302 176-490 118-452 (1249)
5 1vt4_I APAF-1 related killer D 100.0 1.9E-32 6.7E-37 331.2 18.9 274 182-483 128-436 (1221)
6 1z6t_A APAF-1, apoptotic prote 100.0 9.9E-32 3.4E-36 329.6 20.8 332 176-523 118-506 (591)
7 3rgz_A Protein brassinosteroid 100.0 4.4E-31 1.5E-35 333.2 23.9 344 521-879 204-560 (768)
8 3rgz_A Protein brassinosteroid 100.0 8.7E-31 3E-35 330.5 22.9 359 521-890 298-739 (768)
9 4eco_A Uncharacterized protein 100.0 2.4E-29 8.3E-34 309.9 23.0 380 520-913 84-598 (636)
10 3t6q_A CD180 antigen; protein- 100.0 5.5E-29 1.9E-33 306.8 25.8 359 520-890 36-461 (606)
11 4ecn_A Leucine-rich repeat pro 100.0 1.1E-28 3.8E-33 308.6 27.1 359 520-892 428-841 (876)
12 3vq2_A TLR4, TOLL-like recepto 100.0 1.8E-28 6.2E-33 302.2 28.4 221 663-891 304-534 (606)
13 3t6q_A CD180 antigen; protein- 100.0 3.6E-28 1.2E-32 299.5 30.7 377 522-912 86-557 (606)
14 4eco_A Uncharacterized protein 100.0 8.4E-29 2.9E-33 305.1 23.8 360 520-892 186-601 (636)
15 3vq2_A TLR4, TOLL-like recepto 100.0 3.2E-28 1.1E-32 299.9 27.0 250 638-896 303-563 (606)
16 4ecn_A Leucine-rich repeat pro 100.0 1.7E-28 5.7E-33 307.0 24.5 382 520-914 326-839 (876)
17 2z7x_B TOLL-like receptor 1, v 100.0 6.3E-28 2.1E-32 291.5 22.0 353 521-892 25-482 (520)
18 3v47_A TOLL-like receptor 5B a 100.0 1.7E-27 5.9E-32 282.6 24.6 340 521-874 34-412 (455)
19 3h16_A TIR protein; bacteria T 100.0 3.8E-29 1.3E-33 246.3 7.8 121 7-128 18-138 (154)
20 2z63_A TOLL-like receptor 4, v 100.0 2E-27 6.7E-32 290.8 23.7 138 521-668 32-175 (570)
21 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 4.1E-27 1.4E-31 286.9 24.5 353 521-892 56-511 (562)
22 2z81_A CD282 antigen, TOLL-lik 99.9 2.8E-27 9.7E-32 287.9 21.6 369 521-913 30-508 (549)
23 3j0a_A TOLL-like receptor 5; m 99.9 9.5E-27 3.3E-31 296.7 26.8 263 521-795 28-349 (844)
24 2z7x_B TOLL-like receptor 1, v 99.9 8.4E-27 2.9E-31 281.6 21.3 365 521-913 4-479 (520)
25 2z63_A TOLL-like receptor 4, v 99.9 4.3E-26 1.5E-30 278.9 25.1 356 521-893 56-533 (570)
26 3v47_A TOLL-like receptor 5B a 99.9 3.2E-26 1.1E-30 271.6 23.2 353 521-892 14-409 (455)
27 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 5.4E-26 1.9E-30 276.9 24.4 366 520-912 34-507 (562)
28 1ziw_A TOLL-like receptor 3; i 99.9 1.4E-25 4.9E-30 280.1 27.8 338 521-869 29-442 (680)
29 3bz5_A Internalin-J, INLJ; leu 99.9 1.8E-25 6.1E-30 263.4 26.6 294 521-847 46-353 (457)
30 4fmz_A Internalin; leucine ric 99.9 1.5E-25 5.1E-30 255.7 23.4 303 537-869 40-345 (347)
31 3o6n_A APL1; leucine-rich repe 99.9 2.1E-25 7.3E-30 258.7 24.4 258 575-846 70-331 (390)
32 1o6v_A Internalin A; bacterial 99.9 2.3E-25 7.9E-30 264.6 24.8 319 522-874 51-370 (466)
33 2z81_A CD282 antigen, TOLL-lik 99.9 6.7E-26 2.3E-30 275.8 19.5 345 521-891 54-510 (549)
34 4fmz_A Internalin; leucine ric 99.9 4.6E-25 1.6E-29 251.6 24.4 295 575-887 45-342 (347)
35 3j0a_A TOLL-like receptor 5; m 99.9 1.1E-24 3.9E-29 277.6 30.2 325 518-862 5-389 (844)
36 1o6v_A Internalin A; bacterial 99.9 3.8E-25 1.3E-29 262.8 24.0 316 521-871 72-389 (466)
37 1ziw_A TOLL-like receptor 3; i 99.9 1.7E-24 5.8E-29 270.5 30.9 94 777-871 398-494 (680)
38 3oja_B Anopheles plasmodium-re 99.9 4.1E-25 1.4E-29 270.6 24.5 299 522-847 56-359 (597)
39 2id5_A Lingo-1, leucine rich r 99.9 9.8E-25 3.3E-29 260.4 25.8 293 572-871 30-334 (477)
40 3o6n_A APL1; leucine-rich repe 99.9 6.8E-25 2.3E-29 254.4 23.5 300 521-847 49-353 (390)
41 2id5_A Lingo-1, leucine rich r 99.9 6.4E-25 2.2E-29 262.0 23.2 292 521-846 36-333 (477)
42 1jl5_A Outer protein YOPM; leu 99.9 7.5E-24 2.6E-28 249.3 29.3 311 521-890 95-408 (454)
43 4g8a_A TOLL-like receptor 4; l 99.9 2.7E-24 9.3E-29 266.5 25.4 358 520-891 55-580 (635)
44 3oja_B Anopheles plasmodium-re 99.9 2.1E-24 7.1E-29 264.4 23.5 305 539-870 49-358 (597)
45 3bz5_A Internalin-J, INLJ; leu 99.9 9.5E-24 3.3E-28 248.7 26.7 299 536-871 37-353 (457)
46 1jl5_A Outer protein YOPM; leu 99.9 9E-24 3.1E-28 248.7 24.5 277 573-880 90-382 (454)
47 2ft3_A Biglycan; proteoglycan, 99.9 2.7E-23 9.1E-28 235.3 23.7 282 541-844 33-331 (332)
48 1xku_A Decorin; proteoglycan, 99.9 5.6E-23 1.9E-27 232.4 26.1 283 540-844 30-330 (330)
49 2ft3_A Biglycan; proteoglycan, 99.9 4.1E-23 1.4E-27 233.7 22.1 280 575-867 34-330 (332)
50 1xku_A Decorin; proteoglycan, 99.9 1.1E-22 3.9E-27 229.9 24.5 280 575-867 32-329 (330)
51 3g06_A SSPH2 (leucine-rich rep 99.9 1.3E-22 4.5E-27 245.8 25.1 271 539-857 38-308 (622)
52 1ogq_A PGIP-2, polygalacturona 99.9 2.9E-23 9.9E-28 232.5 16.1 245 596-868 50-302 (313)
53 4fcg_A Uncharacterized protein 99.9 6.4E-23 2.2E-27 231.1 18.5 227 597-865 82-309 (328)
54 4fcg_A Uncharacterized protein 99.9 6.4E-23 2.2E-27 231.1 17.5 224 575-825 82-316 (328)
55 3g06_A SSPH2 (leucine-rich rep 99.9 3E-22 1E-26 242.7 24.2 268 575-881 41-308 (622)
56 3ub2_A TOLL/interleukin-1 rece 99.9 9.2E-25 3.2E-29 211.0 1.5 130 6-140 7-145 (146)
57 1ogq_A PGIP-2, polygalacturona 99.9 2.4E-23 8.1E-28 233.2 12.5 249 574-850 50-308 (313)
58 4g8a_A TOLL-like receptor 4; l 99.9 1.2E-21 4.2E-26 242.6 26.1 336 521-870 80-580 (635)
59 2z80_A TOLL-like receptor 2, v 99.9 8E-22 2.7E-26 225.2 15.3 266 579-849 36-317 (353)
60 3zyi_A Leucine-rich repeat-con 99.9 2.1E-20 7.3E-25 220.9 23.7 242 576-845 56-302 (452)
61 2z66_A Variable lymphocyte rec 99.9 2.4E-21 8.1E-26 216.6 14.6 245 578-848 11-263 (306)
62 3zyj_A Leucine-rich repeat-con 99.8 2.3E-20 7.9E-25 219.8 22.9 242 576-845 45-291 (440)
63 3o53_A Protein LRIM1, AGAP0063 99.8 1.7E-21 5.7E-26 218.7 8.7 237 595-868 33-273 (317)
64 1z7x_W Ribonuclease inhibitor; 99.8 3E-23 1E-27 246.5 -6.7 345 521-870 7-411 (461)
65 2z66_A Variable lymphocyte rec 99.8 3.4E-20 1.2E-24 207.1 18.4 247 599-872 10-263 (306)
66 1ozn_A Reticulon 4 receptor; N 99.8 3.9E-20 1.3E-24 204.3 17.1 221 577-847 14-239 (285)
67 1ozn_A Reticulon 4 receptor; N 99.8 7.9E-20 2.7E-24 201.9 18.9 225 599-873 14-241 (285)
68 1z7x_W Ribonuclease inhibitor; 99.8 1.1E-22 3.7E-27 241.6 -5.7 341 522-867 33-440 (461)
69 3oja_A Leucine-rich immune mol 99.8 1.4E-20 4.9E-25 223.6 12.0 234 595-865 33-270 (487)
70 3zyj_A Leucine-rich repeat-con 99.8 3.1E-19 1E-23 210.2 21.9 225 572-823 62-292 (440)
71 3zyi_A Leucine-rich repeat-con 99.8 2.9E-19 1E-23 211.1 21.6 225 572-823 73-303 (452)
72 2z80_A TOLL-like receptor 2, v 99.8 5E-20 1.7E-24 210.3 14.2 271 595-874 30-318 (353)
73 2js7_A Myeloid differentiation 99.8 5.1E-21 1.8E-25 188.1 4.3 103 4-108 11-117 (160)
74 1wwl_A Monocyte differentiatio 99.8 1.9E-20 6.5E-25 209.6 8.9 154 711-870 150-309 (312)
75 1fyx_A TOLL-like receptor 2; b 99.8 3.4E-21 1.2E-25 187.6 1.7 101 6-108 2-107 (149)
76 1wwl_A Monocyte differentiatio 99.8 2.4E-20 8.2E-25 208.8 8.4 240 575-847 44-310 (312)
77 2j67_A TOLL like receptor 10; 99.8 1.4E-20 4.7E-25 187.8 4.4 99 6-106 32-134 (178)
78 1t3g_A X-linked interleukin-1 99.8 5.7E-20 1.9E-24 180.4 6.9 102 8-109 1-115 (159)
79 3o53_A Protein LRIM1, AGAP0063 99.8 2.1E-19 7.3E-24 201.6 10.2 216 642-870 34-250 (317)
80 3oja_A Leucine-rich immune mol 99.8 8E-19 2.7E-23 208.5 13.5 217 617-870 32-250 (487)
81 3rfs_A Internalin B, repeat mo 99.8 3E-18 1E-22 187.6 14.2 231 595-860 18-249 (272)
82 1p9a_G Platelet glycoprotein I 99.8 2.8E-17 9.7E-22 181.3 21.0 201 616-846 7-208 (290)
83 4ay9_X Follicle-stimulating ho 99.7 1.2E-17 4.1E-22 190.0 17.9 189 577-767 12-212 (350)
84 2z62_A TOLL-like receptor 4, v 99.7 2.9E-17 9.9E-22 180.3 19.1 221 580-850 13-241 (276)
85 2xwt_C Thyrotropin receptor; s 99.7 1.5E-17 5.2E-22 178.3 16.1 205 586-844 23-237 (239)
86 2z62_A TOLL-like receptor 4, v 99.7 3.6E-17 1.2E-21 179.6 18.6 223 601-873 12-240 (276)
87 3rfs_A Internalin B, repeat mo 99.7 2.3E-17 7.9E-22 180.6 15.8 227 617-881 17-246 (272)
88 2o6q_A Variable lymphocyte rec 99.7 1.1E-16 3.8E-21 175.0 21.2 114 729-848 105-220 (270)
89 1h6u_A Internalin H; cell adhe 99.7 2.3E-17 8E-22 183.9 15.5 212 597-847 20-231 (308)
90 3ogk_B Coronatine-insensitive 99.7 2.3E-19 7.8E-24 220.2 -1.2 321 537-865 160-524 (592)
91 2ast_B S-phase kinase-associat 99.7 1.9E-18 6.4E-23 195.8 5.4 220 575-820 48-282 (336)
92 2o6q_A Variable lymphocyte rec 99.7 2.6E-16 8.8E-21 172.0 20.4 198 575-823 17-218 (270)
93 2ast_B S-phase kinase-associat 99.7 1.7E-18 5.7E-23 196.2 3.1 246 541-824 47-307 (336)
94 2ca6_A RAN GTPase-activating p 99.7 8.3E-19 2.8E-23 202.8 -0.2 246 586-850 21-320 (386)
95 4glp_A Monocyte differentiatio 99.7 3.6E-17 1.2E-21 182.8 12.9 108 730-847 194-308 (310)
96 1h6u_A Internalin H; cell adhe 99.7 1.4E-16 4.7E-21 177.6 15.6 195 575-829 42-236 (308)
97 3ogk_B Coronatine-insensitive 99.7 1.1E-18 3.9E-23 214.0 -2.6 333 521-862 168-543 (592)
98 2xwt_C Thyrotropin receptor; s 99.7 2.8E-16 9.5E-21 168.4 15.0 175 572-767 29-215 (239)
99 4ay9_X Follicle-stimulating ho 99.7 5.7E-16 1.9E-20 176.2 16.9 234 599-863 12-252 (350)
100 1p9a_G Platelet glycoprotein I 99.7 2.1E-15 7.2E-20 166.3 19.9 149 710-867 55-205 (290)
101 2p1m_B Transport inhibitor res 99.6 2.6E-18 8.8E-23 210.9 -7.6 111 732-845 371-493 (594)
102 3cvr_A Invasion plasmid antige 99.6 9.2E-16 3.1E-20 183.5 14.0 195 536-758 49-255 (571)
103 4glp_A Monocyte differentiatio 99.6 2.4E-16 8.1E-21 176.1 8.3 156 710-870 145-307 (310)
104 2ca6_A RAN GTPase-activating p 99.6 1.3E-17 4.5E-22 192.7 -2.7 242 565-826 24-319 (386)
105 3cvr_A Invasion plasmid antige 99.6 2.9E-15 9.9E-20 179.2 17.5 187 620-857 60-254 (571)
106 3goz_A Leucine-rich repeat-con 99.6 4.4E-17 1.5E-21 186.3 1.7 254 579-848 3-299 (362)
107 2p1m_B Transport inhibitor res 99.6 3.5E-18 1.2E-22 209.7 -9.0 129 537-676 101-245 (594)
108 1m9s_A Internalin B; cell inva 99.6 1.9E-15 6.4E-20 183.0 13.3 79 594-676 19-97 (605)
109 3m19_A Variable lymphocyte rec 99.6 1.6E-14 5.4E-19 155.9 18.8 158 710-872 35-194 (251)
110 3m19_A Variable lymphocyte rec 99.6 1.9E-14 6.7E-19 155.2 18.9 66 781-848 128-194 (251)
111 1h6t_A Internalin B; cell adhe 99.6 5.6E-15 1.9E-19 163.0 14.5 193 594-847 22-214 (291)
112 2qen_A Walker-type ATPase; unk 99.6 5.3E-14 1.8E-18 160.0 22.2 286 176-484 6-349 (350)
113 2fna_A Conserved hypothetical 99.6 5.6E-14 1.9E-18 160.3 20.2 284 177-483 8-356 (357)
114 1dce_A Protein (RAB geranylger 99.6 1.7E-17 5.9E-22 199.7 -10.8 201 594-850 347-550 (567)
115 3goz_A Leucine-rich repeat-con 99.6 2.1E-16 7.3E-21 180.6 -1.5 237 568-824 16-298 (362)
116 1m9s_A Internalin B; cell inva 99.5 2.7E-14 9.2E-19 172.8 14.7 182 581-796 28-209 (605)
117 2o6s_A Variable lymphocyte rec 99.5 6.9E-14 2.3E-18 146.2 15.7 160 709-881 27-189 (208)
118 1w5s_A Origin recognition comp 99.5 2.3E-13 7.7E-18 158.6 20.8 280 179-468 19-371 (412)
119 1h6t_A Internalin B; cell adhe 99.5 6.1E-14 2.1E-18 154.7 13.1 84 732-826 133-216 (291)
120 2o6s_A Variable lymphocyte rec 99.5 8E-14 2.7E-18 145.7 12.8 70 781-858 121-190 (208)
121 4ezg_A Putative uncharacterize 99.5 5.7E-14 2E-18 145.3 11.5 107 732-845 87-193 (197)
122 2qby_B CDC6 homolog 3, cell di 99.5 1.8E-12 6.2E-17 149.4 24.5 269 181-468 19-339 (384)
123 3e6j_A Variable lymphocyte rec 99.5 2.6E-13 8.8E-18 144.0 15.9 150 713-870 22-172 (229)
124 2v70_A SLIT-2, SLIT homolog 2 99.5 3.3E-13 1.1E-17 142.1 16.4 151 693-849 15-169 (220)
125 2v9t_B SLIT homolog 2 protein 99.5 5.4E-13 1.8E-17 140.5 16.7 140 701-846 22-165 (220)
126 1xeu_A Internalin C; cellular 99.5 5.5E-14 1.9E-18 152.5 8.6 171 593-798 16-186 (263)
127 4ezg_A Putative uncharacterize 99.5 9.2E-14 3.2E-18 143.8 9.6 147 575-768 45-192 (197)
128 1dce_A Protein (RAB geranylger 99.5 6E-16 2.1E-20 186.2 -8.2 191 638-874 345-550 (567)
129 2v9t_B SLIT homolog 2 protein 99.4 6.5E-13 2.2E-17 139.9 15.1 151 713-870 14-165 (220)
130 2xot_A Amphoterin-induced prot 99.4 4.7E-13 1.6E-17 152.6 14.5 151 701-856 29-186 (361)
131 2v70_A SLIT-2, SLIT homolog 2 99.4 8.7E-13 3E-17 138.9 15.3 154 712-872 13-168 (220)
132 3e6j_A Variable lymphocyte rec 99.4 1.9E-12 6.5E-17 137.3 16.8 151 692-850 22-176 (229)
133 2qby_A CDC6 homolog 1, cell di 99.4 7.5E-12 2.6E-16 144.2 21.8 302 179-510 17-376 (386)
134 4b8c_D Glucose-repressible alc 99.4 1.3E-13 4.3E-18 171.4 7.3 126 720-853 211-336 (727)
135 2v1u_A Cell division control p 99.4 7.7E-12 2.6E-16 144.2 21.6 301 180-514 17-383 (387)
136 2ell_A Acidic leucine-rich nuc 99.4 1E-12 3.5E-17 132.1 10.9 132 709-846 23-160 (168)
137 2xot_A Amphoterin-induced prot 99.4 1.2E-12 4E-17 149.4 12.5 99 577-676 21-122 (361)
138 1w8a_A SLIT protein; signaling 99.4 5.2E-12 1.8E-16 129.8 14.2 131 713-850 11-143 (192)
139 4b8c_D Glucose-repressible alc 99.3 2.9E-13 9.9E-18 168.1 3.9 131 603-755 208-338 (727)
140 2je0_A Acidic leucine-rich nuc 99.3 1.4E-12 4.9E-17 128.1 7.7 126 710-841 17-148 (149)
141 1xeu_A Internalin C; cellular 99.3 7.4E-12 2.5E-16 135.7 13.8 166 664-845 17-184 (263)
142 2wfh_A SLIT homolog 2 protein 99.3 2.3E-11 7.9E-16 125.0 13.7 126 713-846 13-139 (193)
143 2o6r_A Variable lymphocyte rec 99.2 4E-11 1.4E-15 121.5 13.5 131 712-850 9-141 (177)
144 1a9n_A U2A', U2A'; complex (nu 99.2 1.2E-11 4.1E-16 125.2 9.2 129 710-845 19-152 (176)
145 2ell_A Acidic leucine-rich nuc 99.2 1.9E-11 6.4E-16 122.7 9.9 132 730-868 21-158 (168)
146 1fnn_A CDC6P, cell division co 99.2 3.3E-10 1.1E-14 130.6 21.6 278 180-468 15-351 (389)
147 2je0_A Acidic leucine-rich nuc 99.2 1.5E-11 5.2E-16 120.7 8.1 127 731-864 15-147 (149)
148 1w8a_A SLIT protein; signaling 99.2 6.9E-11 2.3E-15 121.4 13.3 125 693-823 12-139 (192)
149 1njg_A DNA polymerase III subu 99.2 5.1E-10 1.7E-14 119.7 18.7 200 177-388 18-230 (250)
150 3sb4_A Hypothetical leucine ri 99.2 6.6E-11 2.3E-15 133.0 12.2 280 539-840 23-328 (329)
151 2wfh_A SLIT homolog 2 protein 99.2 1.8E-10 6.3E-15 118.2 14.0 117 702-823 22-139 (193)
152 3sb4_A Hypothetical leucine ri 99.1 2.4E-10 8.3E-15 128.4 11.4 261 536-817 43-328 (329)
153 1a9n_A U2A', U2A'; complex (nu 99.1 1.9E-10 6.4E-15 116.3 7.9 107 575-684 20-130 (176)
154 2chg_A Replication factor C sm 99.0 3.7E-09 1.3E-13 111.2 17.7 189 177-386 12-204 (226)
155 2o6r_A Variable lymphocyte rec 99.0 3E-09 1E-13 107.6 14.5 111 709-825 27-139 (177)
156 1ds9_A Outer arm dynein; leuci 99.0 5.5E-12 1.9E-16 130.4 -6.3 121 721-851 36-158 (198)
157 4fdw_A Leucine rich hypothetic 98.9 1.8E-08 6.2E-13 115.6 19.3 214 575-825 136-360 (401)
158 2r9u_A Variable lymphocyte rec 98.9 4.6E-09 1.6E-13 105.6 12.0 103 713-846 15-118 (174)
159 3g39_A Variable lymphocyte rec 98.9 4.7E-09 1.6E-13 105.2 11.9 105 712-847 11-116 (170)
160 1sxj_B Activator 1 37 kDa subu 98.9 1.1E-08 3.7E-13 114.5 14.8 187 178-386 17-210 (323)
161 4fdw_A Leucine rich hypothetic 98.8 7.8E-08 2.7E-12 110.3 20.1 130 711-848 227-360 (401)
162 2r9u_A Variable lymphocyte rec 98.8 1.3E-08 4.5E-13 102.3 11.9 104 760-871 15-119 (174)
163 3g39_A Variable lymphocyte rec 98.8 1.5E-08 5.2E-13 101.5 12.1 107 759-873 11-118 (170)
164 1ds9_A Outer arm dynein; leuci 98.8 6.5E-11 2.2E-15 122.3 -6.4 126 535-672 42-180 (198)
165 1iqp_A RFCS; clamp loader, ext 98.8 5.8E-08 2E-12 108.7 15.3 186 177-385 20-211 (327)
166 1hqc_A RUVB; extended AAA-ATPa 98.7 6.7E-07 2.3E-11 99.9 23.0 252 178-471 8-301 (324)
167 4fs7_A Uncharacterized protein 98.6 2E-06 6.7E-11 98.9 22.1 286 529-843 59-353 (394)
168 2chq_A Replication factor C sm 98.6 6.1E-07 2.1E-11 99.9 16.9 184 178-384 13-202 (319)
169 2ifg_A High affinity nerve gro 98.6 1.5E-07 5.1E-12 106.3 10.8 103 714-823 12-116 (347)
170 1jr3_A DNA polymerase III subu 98.6 6.9E-07 2.4E-11 102.0 16.4 197 178-386 12-221 (373)
171 2ifg_A High affinity nerve gro 98.5 1.8E-07 6E-12 105.8 10.5 105 736-847 11-117 (347)
172 2ra8_A Uncharacterized protein 98.5 2.9E-08 9.8E-13 111.8 3.8 116 732-847 192-321 (362)
173 3un9_A NLR family member X1; l 98.5 9.2E-09 3.1E-13 116.9 -0.5 138 711-848 102-254 (372)
174 3pfi_A Holliday junction ATP-d 98.5 8.6E-06 2.9E-10 91.4 22.8 254 178-475 25-320 (338)
175 4fs7_A Uncharacterized protein 98.5 6E-06 2.1E-10 94.8 21.1 285 529-843 82-376 (394)
176 3bos_A Putative DNA replicatio 98.5 3.3E-07 1.1E-11 97.4 9.5 177 179-387 25-218 (242)
177 1jbk_A CLPB protein; beta barr 98.4 1.8E-06 6E-11 88.0 14.0 50 180-231 20-69 (195)
178 3d8b_A Fidgetin-like protein 1 98.4 2.3E-06 8E-11 96.5 16.2 203 157-387 63-296 (357)
179 3te6_A Regulatory protein SIR3 98.4 1.4E-06 4.9E-11 95.1 13.5 163 183-355 21-212 (318)
180 1sxj_A Activator 1 95 kDa subu 98.4 3E-06 1E-10 100.6 17.3 191 177-385 34-252 (516)
181 3un9_A NLR family member X1; l 98.4 1.8E-08 6.1E-13 114.5 -3.0 93 732-824 154-253 (372)
182 3h4m_A Proteasome-activating n 98.4 1.3E-06 4.5E-11 95.5 11.6 183 178-385 13-230 (285)
183 4gt6_A Cell surface protein; l 98.4 5.2E-05 1.8E-09 86.9 25.2 289 529-844 51-368 (394)
184 1sxj_D Activator 1 41 kDa subu 98.3 5.4E-06 1.8E-10 93.7 15.9 198 177-385 32-234 (353)
185 2z4s_A Chromosomal replication 98.3 3E-06 1E-10 98.2 13.2 184 180-384 103-304 (440)
186 1d2n_A N-ethylmaleimide-sensit 98.3 8.4E-06 2.9E-10 88.3 15.6 169 182-378 33-229 (272)
187 3eie_A Vacuolar protein sortin 98.3 1.5E-05 5.2E-10 88.5 17.3 187 177-387 13-229 (322)
188 1sxj_E Activator 1 40 kDa subu 98.2 1.2E-05 4.2E-10 90.7 16.2 200 178-385 10-236 (354)
189 3b9p_A CG5977-PA, isoform A; A 98.2 1.2E-05 4.1E-10 88.3 15.1 199 164-387 3-234 (297)
190 2qp9_X Vacuolar protein sortin 98.2 2.3E-05 8E-10 88.1 17.7 185 178-387 47-262 (355)
191 3uk6_A RUVB-like 2; hexameric 98.2 1.9E-05 6.5E-10 89.7 17.2 202 181-386 43-303 (368)
192 2qz4_A Paraplegin; AAA+, SPG7, 98.2 1.6E-05 5.5E-10 85.5 15.8 182 181-385 5-221 (262)
193 2ra8_A Uncharacterized protein 98.2 5.3E-07 1.8E-11 101.4 4.0 138 611-768 164-318 (362)
194 4gt6_A Cell surface protein; l 98.2 6.6E-05 2.3E-09 86.1 20.9 290 529-844 75-389 (394)
195 1l8q_A Chromosomal replication 98.2 2.1E-05 7.3E-10 87.5 15.6 179 180-381 9-203 (324)
196 2zan_A Vacuolar protein sortin 98.1 6.5E-05 2.2E-09 87.1 18.9 188 177-387 129-346 (444)
197 2p65_A Hypothetical protein PF 98.1 1.2E-05 4E-10 81.3 11.0 50 180-231 20-69 (187)
198 1xwi_A SKD1 protein; VPS4B, AA 98.1 6.3E-05 2.1E-09 83.3 17.4 184 180-387 10-224 (322)
199 4h09_A Hypothetical leucine ri 98.1 0.00061 2.1E-08 77.5 26.0 105 729-841 213-318 (379)
200 3pvs_A Replication-associated 98.1 1.3E-05 4.4E-10 92.7 11.8 179 177-383 21-212 (447)
201 4h09_A Hypothetical leucine ri 98.0 0.0004 1.4E-08 79.0 23.9 122 711-842 218-342 (379)
202 3vfd_A Spastin; ATPase, microt 98.0 3.4E-05 1.2E-09 88.2 14.7 186 177-387 110-327 (389)
203 3u61_B DNA polymerase accessor 98.0 4.7E-05 1.6E-09 84.7 14.9 179 177-381 21-211 (324)
204 3syl_A Protein CBBX; photosynt 98.0 3.6E-05 1.2E-09 85.0 12.6 151 183-356 32-219 (309)
205 3cf0_A Transitional endoplasmi 97.9 0.0003 1E-08 77.1 17.5 154 180-355 13-200 (301)
206 1a5t_A Delta prime, HOLB; zinc 97.8 0.00028 9.7E-09 78.6 16.8 181 189-386 9-205 (334)
207 1sxj_C Activator 1 40 kDa subu 97.7 0.00027 9.1E-09 79.1 15.1 184 178-382 21-208 (340)
208 1in4_A RUVB, holliday junction 97.7 0.002 6.8E-08 71.6 21.6 258 178-478 21-320 (334)
209 3n70_A Transport activator; si 97.7 2.5E-05 8.5E-10 75.5 5.1 47 183-229 2-48 (145)
210 1io0_A Tropomodulin; LRR prote 97.7 7.7E-06 2.6E-10 82.8 1.0 118 728-845 31-163 (185)
211 4b4t_J 26S protease regulatory 97.7 0.00028 9.6E-09 78.9 13.3 172 181-379 147-354 (405)
212 3hu3_A Transitional endoplasmi 97.6 0.00018 6.1E-09 84.0 11.5 180 181-385 203-414 (489)
213 3pxg_A Negative regulator of g 97.6 0.00048 1.7E-08 80.4 15.0 150 178-354 176-338 (468)
214 4b4t_M 26S protease regulatory 97.6 0.00016 5.4E-09 82.2 10.3 172 180-378 179-386 (434)
215 4b4t_L 26S protease subunit RP 97.6 0.0003 1E-08 80.0 12.5 173 180-379 179-387 (437)
216 1lv7_A FTSH; alpha/beta domain 97.6 0.0003 1E-08 75.2 12.0 155 178-354 8-195 (257)
217 2bjv_A PSP operon transcriptio 97.6 0.0008 2.7E-08 72.2 15.4 49 182-230 6-54 (265)
218 1qvr_A CLPB protein; coiled co 97.6 0.00031 1.1E-08 88.7 13.5 51 179-231 167-217 (854)
219 2r62_A Cell division protease 97.6 6.5E-05 2.2E-09 81.0 6.4 154 179-354 8-196 (268)
220 4b4t_H 26S protease regulatory 97.5 0.001 3.4E-08 75.4 15.7 172 181-379 208-415 (467)
221 1ofh_A ATP-dependent HSL prote 97.5 0.00049 1.7E-08 75.8 13.1 48 183-230 16-75 (310)
222 4b4t_K 26S protease regulatory 97.5 0.00062 2.1E-08 77.3 13.2 53 181-233 171-234 (428)
223 2w58_A DNAI, primosome compone 97.5 0.00016 5.4E-09 74.2 7.7 61 180-240 23-89 (202)
224 3ec2_A DNA replication protein 97.5 0.00027 9.2E-09 71.0 9.2 26 205-230 38-63 (180)
225 4fcw_A Chaperone protein CLPB; 97.4 0.00049 1.7E-08 75.9 11.6 50 183-232 18-74 (311)
226 3e4g_A ATP synthase subunit S, 97.4 3.5E-05 1.2E-09 75.9 1.8 66 615-680 81-153 (176)
227 2gno_A DNA polymerase III, gam 97.4 0.00061 2.1E-08 74.4 11.5 147 186-354 1-152 (305)
228 4b4t_I 26S protease regulatory 97.4 0.00063 2.1E-08 76.3 11.3 172 180-378 180-387 (437)
229 3e4g_A ATP synthase subunit S, 97.4 4.4E-05 1.5E-09 75.2 1.8 37 811-848 115-154 (176)
230 1io0_A Tropomodulin; LRR prote 97.4 3.4E-05 1.2E-09 78.0 0.8 114 710-823 36-164 (185)
231 1r6b_X CLPA protein; AAA+, N-t 97.3 0.0013 4.5E-08 82.0 14.5 154 180-354 184-362 (758)
232 2ce7_A Cell division protein F 97.3 0.0017 5.7E-08 75.1 13.6 174 181-379 15-221 (476)
233 3rw6_A Nuclear RNA export fact 97.3 9.3E-05 3.2E-09 78.7 2.8 38 730-767 167-206 (267)
234 1ojl_A Transcriptional regulat 97.3 0.0012 4.3E-08 72.1 11.9 48 182-229 2-49 (304)
235 2c9o_A RUVB-like 1; hexameric 97.2 0.0027 9.2E-08 73.9 15.3 50 181-230 36-88 (456)
236 3pxi_A Negative regulator of g 97.2 0.0019 6.6E-08 80.4 14.6 150 178-354 176-338 (758)
237 3co5_A Putative two-component 97.2 8.9E-05 3.1E-09 71.3 1.7 48 182-229 4-51 (143)
238 3rw6_A Nuclear RNA export fact 97.2 0.00018 6.1E-09 76.5 3.7 42 808-850 194-237 (267)
239 3t15_A Ribulose bisphosphate c 97.1 0.002 6.9E-08 70.1 11.9 29 204-232 35-63 (293)
240 2kjq_A DNAA-related protein; s 97.0 0.0011 3.9E-08 63.9 7.2 36 205-240 36-71 (149)
241 3cf2_A TER ATPase, transitiona 96.9 0.0032 1.1E-07 77.1 12.1 173 182-379 204-407 (806)
242 1ixz_A ATP-dependent metallopr 96.9 0.0087 3E-07 63.5 14.3 153 180-354 14-199 (254)
243 3pxi_A Negative regulator of g 96.8 0.0037 1.3E-07 77.9 11.9 151 182-354 491-675 (758)
244 1eiw_A Hypothetical protein MT 96.8 0.0014 4.7E-08 58.8 5.6 72 8-103 3-74 (111)
245 1iy2_A ATP-dependent metallopr 96.8 0.0058 2E-07 65.9 11.8 154 179-354 37-223 (278)
246 1ypw_A Transitional endoplasmi 96.6 0.0052 1.8E-07 76.5 11.1 153 180-354 202-385 (806)
247 2dhr_A FTSH; AAA+ protein, hex 96.6 0.013 4.4E-07 68.2 13.5 150 180-354 29-214 (499)
248 2x8a_A Nuclear valosin-contain 96.6 0.019 6.5E-07 61.5 13.6 126 208-354 47-191 (274)
249 3m6a_A ATP-dependent protease 96.6 0.06 2.1E-06 63.7 19.1 50 184-233 83-136 (543)
250 1r6b_X CLPA protein; AAA+, N-t 96.4 0.0074 2.5E-07 75.3 10.1 48 182-229 458-512 (758)
251 2qgz_A Helicase loader, putati 96.0 0.016 5.4E-07 63.3 9.5 36 205-240 152-188 (308)
252 1g5t_A COB(I)alamin adenosyltr 95.5 0.01 3.6E-07 59.1 4.7 35 206-240 29-63 (196)
253 1qvr_A CLPB protein; coiled co 95.5 0.016 5.6E-07 72.9 7.6 49 183-231 559-614 (854)
254 3hyn_A Putative signal transdu 95.3 0.051 1.8E-06 52.2 8.6 92 9-105 5-118 (189)
255 1jr3_D DNA polymerase III, del 95.3 0.14 4.8E-06 56.8 13.9 156 204-384 17-183 (343)
256 2vhj_A Ntpase P4, P4; non- hyd 95.1 0.013 4.5E-07 63.2 4.4 24 205-228 123-146 (331)
257 2cvh_A DNA repair and recombin 95.0 0.05 1.7E-06 56.0 8.4 46 192-240 7-52 (220)
258 3tlx_A Adenylate kinase 2; str 94.9 0.065 2.2E-06 56.2 8.8 27 203-229 27-53 (243)
259 3cf2_A TER ATPase, transitiona 94.8 0.036 1.2E-06 67.9 7.4 152 182-354 477-661 (806)
260 3sr0_A Adenylate kinase; phosp 94.7 0.043 1.5E-06 55.8 6.7 89 207-305 2-94 (206)
261 3hr8_A Protein RECA; alpha and 94.7 0.16 5.5E-06 56.1 11.7 54 187-240 42-96 (356)
262 1qhx_A CPT, protein (chloramph 94.7 0.014 4.8E-07 57.9 3.0 25 206-230 4-28 (178)
263 4gp7_A Metallophosphoesterase; 94.6 0.018 6.2E-07 56.8 3.7 21 205-225 9-29 (171)
264 2r44_A Uncharacterized protein 94.6 0.032 1.1E-06 61.7 6.0 47 182-232 27-73 (331)
265 3c8u_A Fructokinase; YP_612366 94.6 0.033 1.1E-06 56.9 5.6 28 203-230 20-47 (208)
266 1u0j_A DNA replication protein 94.4 0.061 2.1E-06 56.5 7.2 38 192-229 91-128 (267)
267 2orw_A Thymidine kinase; TMTK, 94.4 0.026 9E-07 56.4 4.2 26 206-231 4-29 (184)
268 3umf_A Adenylate kinase; rossm 94.4 0.065 2.2E-06 54.8 7.1 27 203-229 27-53 (217)
269 3jvv_A Twitching mobility prot 94.4 0.017 5.8E-07 64.2 2.9 110 206-327 124-234 (356)
270 1rz3_A Hypothetical protein rb 94.3 0.052 1.8E-06 55.1 6.4 43 188-230 4-47 (201)
271 3hws_A ATP-dependent CLP prote 94.3 0.027 9.3E-07 63.2 4.5 47 184-230 17-76 (363)
272 3dm5_A SRP54, signal recogniti 94.3 0.55 1.9E-05 53.2 15.1 36 204-239 99-134 (443)
273 2b8t_A Thymidine kinase; deoxy 94.2 0.022 7.5E-07 58.6 3.3 110 205-325 12-127 (223)
274 3kb2_A SPBC2 prophage-derived 94.2 0.022 7.6E-07 56.0 3.3 25 206-230 2-26 (173)
275 3bh0_A DNAB-like replicative h 94.2 0.12 4E-06 56.6 9.2 70 185-261 49-118 (315)
276 2eyu_A Twitching motility prot 94.1 0.017 5.9E-07 61.3 2.1 109 205-326 25-135 (261)
277 2px0_A Flagellar biosynthesis 94.0 0.47 1.6E-05 51.1 13.4 28 204-231 104-131 (296)
278 3vaa_A Shikimate kinase, SK; s 94.0 0.028 9.5E-07 57.0 3.4 25 205-229 25-49 (199)
279 3e70_C DPA, signal recognition 94.0 0.2 7E-06 54.7 10.6 29 204-232 128-156 (328)
280 3trf_A Shikimate kinase, SK; a 94.0 0.027 9.3E-07 56.2 3.3 24 206-229 6-29 (185)
281 3rfe_A Platelet glycoprotein I 93.9 0.046 1.6E-06 51.0 4.5 53 578-631 12-67 (130)
282 3nbx_X ATPase RAVA; AAA+ ATPas 93.9 0.045 1.5E-06 63.6 5.3 44 182-229 22-65 (500)
283 2ga8_A Hypothetical 39.9 kDa p 93.9 0.039 1.3E-06 60.4 4.5 31 203-233 22-52 (359)
284 1j8m_F SRP54, signal recogniti 93.8 0.16 5.5E-06 54.8 9.1 35 205-239 98-132 (297)
285 3bgw_A DNAB-like replicative h 93.7 0.58 2E-05 53.6 14.3 56 184-240 177-232 (444)
286 1nks_A Adenylate kinase; therm 93.6 0.061 2.1E-06 53.9 5.3 26 206-231 2-27 (194)
287 1odf_A YGR205W, hypothetical 3 93.6 0.061 2.1E-06 57.9 5.5 29 203-231 29-57 (290)
288 3lw7_A Adenylate kinase relate 93.6 0.033 1.1E-06 54.9 3.0 20 206-225 2-21 (179)
289 1zuh_A Shikimate kinase; alpha 93.5 0.038 1.3E-06 54.2 3.4 26 205-230 7-32 (168)
290 3io5_A Recombination and repai 93.5 0.11 3.8E-06 55.7 7.0 49 191-240 11-65 (333)
291 1zu4_A FTSY; GTPase, signal re 93.4 0.13 4.6E-06 56.1 7.9 35 204-239 104-138 (320)
292 1ly1_A Polynucleotide kinase; 93.4 0.042 1.4E-06 54.5 3.5 22 206-227 3-24 (181)
293 3uie_A Adenylyl-sulfate kinase 93.3 0.077 2.6E-06 53.7 5.4 27 204-230 24-50 (200)
294 1pgv_A TMD-1, tropomodulin TMD 93.3 0.031 1.1E-06 56.0 2.3 38 730-767 38-80 (197)
295 1ex7_A Guanylate kinase; subst 93.3 0.027 9.2E-07 56.2 1.8 29 206-234 2-30 (186)
296 2rhm_A Putative kinase; P-loop 93.2 0.059 2E-06 54.1 4.4 25 205-229 5-29 (193)
297 2yvu_A Probable adenylyl-sulfa 93.2 0.078 2.7E-06 52.9 5.2 27 205-231 13-39 (186)
298 1xjc_A MOBB protein homolog; s 93.2 0.075 2.6E-06 51.8 4.8 28 205-232 4-31 (169)
299 3iij_A Coilin-interacting nucl 93.1 0.036 1.2E-06 55.1 2.5 25 205-229 11-35 (180)
300 2r6a_A DNAB helicase, replicat 93.1 0.57 1.9E-05 54.0 13.0 55 185-240 184-239 (454)
301 1um8_A ATP-dependent CLP prote 93.1 0.055 1.9E-06 61.0 4.3 25 206-230 73-97 (376)
302 1zp6_A Hypothetical protein AT 93.1 0.048 1.6E-06 54.7 3.4 24 205-228 9-32 (191)
303 1kag_A SKI, shikimate kinase I 93.1 0.036 1.2E-06 54.6 2.4 25 206-230 5-29 (173)
304 4a1f_A DNAB helicase, replicat 93.0 0.33 1.1E-05 53.1 10.2 73 184-263 26-98 (338)
305 1g8p_A Magnesium-chelatase 38 93.0 0.043 1.5E-06 61.1 3.2 52 177-230 19-70 (350)
306 2xxa_A Signal recognition part 93.0 0.55 1.9E-05 53.4 12.3 29 204-232 99-127 (433)
307 2ze6_A Isopentenyl transferase 92.9 0.056 1.9E-06 57.1 3.7 25 206-230 2-26 (253)
308 3kl4_A SRP54, signal recogniti 92.9 0.49 1.7E-05 53.7 11.6 36 204-239 96-131 (433)
309 1kht_A Adenylate kinase; phosp 92.9 0.054 1.8E-06 54.3 3.4 26 206-231 4-29 (192)
310 2q6t_A DNAB replication FORK h 92.9 0.28 9.5E-06 56.5 9.8 73 184-263 180-253 (444)
311 1via_A Shikimate kinase; struc 92.8 0.052 1.8E-06 53.6 3.2 24 207-230 6-29 (175)
312 2jaq_A Deoxyguanosine kinase; 92.7 0.055 1.9E-06 54.9 3.3 24 207-230 2-25 (205)
313 1v5w_A DMC1, meiotic recombina 92.7 0.28 9.4E-06 54.3 9.2 50 191-240 108-163 (343)
314 4eun_A Thermoresistant glucoki 92.7 0.078 2.7E-06 53.7 4.4 25 205-229 29-53 (200)
315 3ice_A Transcription terminati 92.7 0.16 5.5E-06 55.9 7.0 28 206-233 175-202 (422)
316 2pjz_A Hypothetical protein ST 92.7 0.34 1.2E-05 51.2 9.4 23 206-228 31-53 (263)
317 3t61_A Gluconokinase; PSI-biol 92.7 0.052 1.8E-06 55.1 3.0 24 206-229 19-42 (202)
318 2iyv_A Shikimate kinase, SK; t 92.7 0.047 1.6E-06 54.4 2.6 24 207-230 4-27 (184)
319 1kgd_A CASK, peripheral plasma 92.6 0.061 2.1E-06 53.5 3.4 26 205-230 5-30 (180)
320 1knq_A Gluconate kinase; ALFA/ 92.6 0.072 2.4E-06 52.6 3.8 25 205-229 8-32 (175)
321 2bdt_A BH3686; alpha-beta prot 92.5 0.095 3.3E-06 52.4 4.7 31 206-240 3-33 (189)
322 1tue_A Replication protein E1; 92.5 0.075 2.6E-06 53.2 3.8 41 190-231 44-84 (212)
323 3gmt_A Adenylate kinase; ssgci 92.5 0.13 4.4E-06 52.9 5.7 24 206-229 9-32 (230)
324 2c95_A Adenylate kinase 1; tra 92.5 0.064 2.2E-06 54.0 3.4 25 205-229 9-33 (196)
325 2plr_A DTMP kinase, probable t 92.5 0.11 3.8E-06 52.9 5.4 28 206-233 5-32 (213)
326 3rfe_A Platelet glycoprotein I 92.5 0.14 4.9E-06 47.6 5.5 52 714-767 12-65 (130)
327 1sky_E F1-ATPase, F1-ATP synth 92.5 0.22 7.5E-06 56.7 8.0 31 207-237 153-183 (473)
328 1tev_A UMP-CMP kinase; ploop, 92.5 0.074 2.5E-06 53.4 3.8 24 206-229 4-27 (196)
329 1y63_A LMAJ004144AAA protein; 92.4 0.074 2.5E-06 53.0 3.7 24 205-228 10-33 (184)
330 1vma_A Cell division protein F 92.4 0.16 5.3E-06 55.1 6.5 29 204-232 103-131 (306)
331 2vli_A Antibiotic resistance p 92.4 0.05 1.7E-06 54.1 2.3 25 206-230 6-30 (183)
332 1ukz_A Uridylate kinase; trans 92.3 0.084 2.9E-06 53.5 4.1 26 204-229 14-39 (203)
333 1e6c_A Shikimate kinase; phosp 92.3 0.056 1.9E-06 53.1 2.6 25 206-230 3-27 (173)
334 3cm0_A Adenylate kinase; ATP-b 92.3 0.077 2.6E-06 52.9 3.7 24 206-229 5-28 (186)
335 1nn5_A Similar to deoxythymidy 92.3 0.11 3.8E-06 53.1 4.9 29 205-233 9-37 (215)
336 3b9q_A Chloroplast SRP recepto 92.3 0.22 7.7E-06 53.8 7.6 35 204-239 99-133 (302)
337 2bwj_A Adenylate kinase 5; pho 92.3 0.07 2.4E-06 53.8 3.3 25 206-230 13-37 (199)
338 2pt5_A Shikimate kinase, SK; a 92.3 0.077 2.7E-06 51.8 3.6 24 207-230 2-25 (168)
339 1qf9_A UMP/CMP kinase, protein 92.1 0.089 3.1E-06 52.7 3.9 25 205-229 6-30 (194)
340 1uf9_A TT1252 protein; P-loop, 92.1 0.089 3E-06 53.2 3.9 26 203-228 6-31 (203)
341 3fwy_A Light-independent proto 92.0 0.13 4.5E-06 56.0 5.3 37 203-239 46-82 (314)
342 1uj2_A Uridine-cytidine kinase 91.9 0.087 3E-06 55.6 3.7 28 203-230 20-47 (252)
343 2cdn_A Adenylate kinase; phosp 91.9 0.088 3E-06 53.3 3.6 25 205-229 20-44 (201)
344 1g41_A Heat shock protein HSLU 91.9 0.091 3.1E-06 59.7 4.0 51 183-233 16-78 (444)
345 2qor_A Guanylate kinase; phosp 91.9 0.066 2.3E-06 54.4 2.7 26 205-230 12-37 (204)
346 3tau_A Guanylate kinase, GMP k 91.9 0.075 2.6E-06 54.2 3.1 26 205-230 8-33 (208)
347 1gvn_B Zeta; postsegregational 91.9 0.13 4.3E-06 55.4 4.9 26 204-229 32-57 (287)
348 3a00_A Guanylate kinase, GMP k 91.9 0.064 2.2E-06 53.6 2.4 28 206-233 2-29 (186)
349 1aky_A Adenylate kinase; ATP:A 91.8 0.082 2.8E-06 54.4 3.2 25 206-230 5-29 (220)
350 2ewv_A Twitching motility prot 91.8 0.073 2.5E-06 59.7 3.0 109 205-325 136-245 (372)
351 1u94_A RECA protein, recombina 91.8 0.28 9.7E-06 54.3 7.7 57 184-240 41-98 (356)
352 2dr3_A UPF0273 protein PH0284; 91.7 0.1 3.4E-06 54.7 4.0 36 205-240 23-58 (247)
353 3p32_A Probable GTPase RV1496/ 91.7 0.23 8E-06 55.2 7.1 40 193-232 67-106 (355)
354 1cke_A CK, MSSA, protein (cyti 91.7 0.094 3.2E-06 54.2 3.6 24 206-229 6-29 (227)
355 2if2_A Dephospho-COA kinase; a 91.7 0.09 3.1E-06 53.3 3.4 21 207-227 3-23 (204)
356 2og2_A Putative signal recogni 91.6 0.29 9.9E-06 54.2 7.6 35 204-239 156-190 (359)
357 2grj_A Dephospho-COA kinase; T 91.6 0.12 4.1E-06 51.9 4.1 26 204-229 11-36 (192)
358 2wwf_A Thymidilate kinase, put 91.6 0.096 3.3E-06 53.4 3.6 28 205-232 10-37 (212)
359 2pbr_A DTMP kinase, thymidylat 91.6 0.099 3.4E-06 52.4 3.6 25 207-231 2-26 (195)
360 3a4m_A L-seryl-tRNA(SEC) kinas 91.6 0.1 3.5E-06 55.3 3.8 26 205-230 4-29 (260)
361 3ney_A 55 kDa erythrocyte memb 91.5 0.088 3E-06 52.8 3.0 27 204-230 18-44 (197)
362 2zr9_A Protein RECA, recombina 91.5 0.26 9E-06 54.5 7.2 55 186-240 41-96 (349)
363 2w0m_A SSO2452; RECA, SSPF, un 91.5 0.13 4.4E-06 53.2 4.4 49 192-240 10-58 (235)
364 2qt1_A Nicotinamide riboside k 91.5 0.11 3.7E-06 52.9 3.7 25 204-228 20-44 (207)
365 4a74_A DNA repair and recombin 91.5 0.18 6E-06 52.1 5.4 38 192-229 12-49 (231)
366 3asz_A Uridine kinase; cytidin 91.3 0.13 4.4E-06 52.4 4.2 27 204-230 5-31 (211)
367 2j41_A Guanylate kinase; GMP, 91.2 0.11 3.6E-06 52.9 3.3 24 206-229 7-30 (207)
368 3tr0_A Guanylate kinase, GMP k 91.2 0.1 3.5E-06 52.9 3.3 24 206-229 8-31 (205)
369 2pez_A Bifunctional 3'-phospho 91.2 0.13 4.5E-06 50.9 4.0 27 205-231 5-31 (179)
370 2bbw_A Adenylate kinase 4, AK4 91.2 0.11 3.8E-06 54.5 3.6 25 205-229 27-51 (246)
371 1xp8_A RECA protein, recombina 91.2 0.4 1.4E-05 53.3 8.2 57 184-240 52-109 (366)
372 1n0w_A DNA repair protein RAD5 91.2 0.15 5.2E-06 53.2 4.6 50 191-240 10-65 (243)
373 1jjv_A Dephospho-COA kinase; P 91.2 0.11 3.7E-06 52.9 3.3 22 206-227 3-24 (206)
374 1ye8_A Protein THEP1, hypothet 91.1 0.13 4.3E-06 51.0 3.6 24 207-230 2-25 (178)
375 2j37_W Signal recognition part 91.1 0.96 3.3E-05 52.4 11.5 36 204-239 100-135 (504)
376 3tqc_A Pantothenate kinase; bi 91.1 0.16 5.6E-06 55.2 4.8 46 185-230 70-117 (321)
377 1pgv_A TMD-1, tropomodulin TMD 91.1 0.079 2.7E-06 53.0 2.1 93 752-844 36-137 (197)
378 3fb4_A Adenylate kinase; psych 91.0 0.12 4.3E-06 52.8 3.6 23 207-229 2-24 (216)
379 3nwj_A ATSK2; P loop, shikimat 90.9 0.095 3.2E-06 55.0 2.7 25 206-230 49-73 (250)
380 1zd8_A GTP:AMP phosphotransfer 90.9 0.12 4E-06 53.6 3.3 24 206-229 8-31 (227)
381 1zak_A Adenylate kinase; ATP:A 90.9 0.1 3.5E-06 53.8 2.9 25 206-230 6-30 (222)
382 2i1q_A DNA repair and recombin 90.8 0.33 1.1E-05 53.2 7.0 39 191-229 84-122 (322)
383 2z0h_A DTMP kinase, thymidylat 90.8 0.13 4.6E-06 51.6 3.6 25 207-231 2-26 (197)
384 2yhs_A FTSY, cell division pro 90.7 0.5 1.7E-05 54.2 8.4 36 204-240 292-327 (503)
385 1gtv_A TMK, thymidylate kinase 90.7 0.083 2.8E-06 54.0 2.0 25 207-231 2-26 (214)
386 1puj_A YLQF, conserved hypothe 90.7 1.3 4.3E-05 47.4 11.3 23 205-227 120-142 (282)
387 1ny5_A Transcriptional regulat 90.7 3.7 0.00013 46.0 15.7 47 182-228 137-183 (387)
388 3upu_A ATP-dependent DNA helic 90.6 0.52 1.8E-05 54.5 8.9 29 206-234 46-74 (459)
389 3dzd_A Transcriptional regulat 90.5 9.4 0.00032 42.3 18.8 48 182-229 129-176 (368)
390 4e22_A Cytidylate kinase; P-lo 90.5 0.13 4.3E-06 54.3 3.2 25 205-229 27-51 (252)
391 1m7g_A Adenylylsulfate kinase; 90.5 0.16 5.4E-06 51.9 3.8 26 205-230 25-50 (211)
392 3dl0_A Adenylate kinase; phosp 90.5 0.13 4.5E-06 52.7 3.2 23 207-229 2-24 (216)
393 2wsm_A Hydrogenase expression/ 90.4 0.25 8.4E-06 50.7 5.3 42 189-232 16-57 (221)
394 3be4_A Adenylate kinase; malar 90.3 0.13 4.6E-06 52.7 3.2 24 206-229 6-29 (217)
395 1rj9_A FTSY, signal recognitio 90.3 0.23 7.9E-06 53.7 5.1 36 204-240 101-136 (304)
396 2pt7_A CAG-ALFA; ATPase, prote 90.3 0.25 8.6E-06 54.2 5.4 103 206-324 172-275 (330)
397 2f6r_A COA synthase, bifunctio 90.3 0.16 5.5E-06 54.4 3.8 24 204-227 74-97 (281)
398 1lvg_A Guanylate kinase, GMP k 90.3 0.11 3.9E-06 52.4 2.5 25 206-230 5-29 (198)
399 3k1j_A LON protease, ATP-depen 90.2 0.13 4.6E-06 61.8 3.4 50 179-232 38-87 (604)
400 3ake_A Cytidylate kinase; CMP 90.1 0.16 5.6E-06 51.4 3.6 24 207-230 4-27 (208)
401 2zts_A Putative uncharacterize 90.1 0.18 6.1E-06 52.9 4.0 47 194-240 19-66 (251)
402 2j9r_A Thymidine kinase; TK1, 90.1 0.89 3E-05 45.9 8.8 111 205-325 28-139 (214)
403 2hf9_A Probable hydrogenase ni 90.1 0.35 1.2E-05 49.7 6.2 29 204-232 37-65 (226)
404 3d3q_A TRNA delta(2)-isopenten 90.1 0.16 5.5E-06 55.4 3.6 25 206-230 8-32 (340)
405 3r20_A Cytidylate kinase; stru 89.9 0.17 5.8E-06 52.3 3.5 24 206-229 10-33 (233)
406 2p5t_B PEZT; postsegregational 89.9 0.14 4.8E-06 54.0 2.9 26 205-230 32-57 (253)
407 3aez_A Pantothenate kinase; tr 89.9 0.17 5.7E-06 55.1 3.6 28 203-230 88-115 (312)
408 1fx0_B ATP synthase beta chain 89.9 0.37 1.3E-05 55.0 6.4 52 206-260 166-218 (498)
409 3e1s_A Exodeoxyribonuclease V, 89.9 0.58 2E-05 55.5 8.5 33 206-238 205-237 (574)
410 2jeo_A Uridine-cytidine kinase 89.9 0.2 6.8E-06 52.5 4.0 26 204-229 24-49 (245)
411 1e4v_A Adenylate kinase; trans 89.8 0.18 6.3E-06 51.5 3.7 23 207-229 2-24 (214)
412 1np6_A Molybdopterin-guanine d 89.8 0.28 9.5E-06 48.2 4.8 27 205-231 6-32 (174)
413 2v54_A DTMP kinase, thymidylat 89.8 0.16 5.4E-06 51.4 3.1 24 206-229 5-28 (204)
414 1vht_A Dephospho-COA kinase; s 89.7 0.19 6.7E-06 51.5 3.8 23 205-227 4-26 (218)
415 2xb4_A Adenylate kinase; ATP-b 89.7 0.19 6.3E-06 51.9 3.6 23 207-229 2-24 (223)
416 1htw_A HI0065; nucleotide-bind 89.6 0.19 6.6E-06 48.5 3.3 26 204-229 32-57 (158)
417 1ak2_A Adenylate kinase isoenz 89.6 0.18 6.2E-06 52.3 3.5 25 206-230 17-41 (233)
418 2ehv_A Hypothetical protein PH 89.6 0.26 8.8E-06 51.6 4.7 36 205-240 30-66 (251)
419 1znw_A Guanylate kinase, GMP k 89.5 0.17 5.8E-06 51.5 3.1 24 206-229 21-44 (207)
420 2ck3_D ATP synthase subunit be 89.5 0.81 2.8E-05 51.9 8.8 52 206-260 154-206 (482)
421 1cr0_A DNA primase/helicase; R 89.5 0.3 1E-05 52.7 5.3 36 205-240 35-71 (296)
422 1yrb_A ATP(GTP)binding protein 89.4 0.34 1.2E-05 51.1 5.5 27 204-230 13-39 (262)
423 3crm_A TRNA delta(2)-isopenten 89.3 0.19 6.6E-06 54.5 3.4 24 206-229 6-29 (323)
424 2f1r_A Molybdopterin-guanine d 89.1 0.15 5.1E-06 50.0 2.2 27 206-232 3-29 (171)
425 1z6g_A Guanylate kinase; struc 89.1 0.15 5.1E-06 52.4 2.3 25 205-229 23-47 (218)
426 1a7j_A Phosphoribulokinase; tr 89.0 0.14 4.9E-06 55.1 2.2 27 204-230 4-30 (290)
427 2r8r_A Sensor protein; KDPD, P 88.9 0.45 1.5E-05 48.5 5.6 27 206-232 7-33 (228)
428 1cp2_A CP2, nitrogenase iron p 88.8 0.39 1.3E-05 51.0 5.5 34 206-239 2-35 (269)
429 3end_A Light-independent proto 88.8 0.36 1.2E-05 52.5 5.3 36 204-239 40-75 (307)
430 1s96_A Guanylate kinase, GMP k 88.7 0.2 6.8E-06 51.4 2.9 26 205-230 16-41 (219)
431 2i3b_A HCR-ntpase, human cance 88.6 0.21 7.3E-06 49.8 3.0 24 207-230 3-26 (189)
432 2z43_A DNA repair and recombin 88.5 0.33 1.1E-05 53.3 4.7 50 191-240 93-148 (324)
433 3a8t_A Adenylate isopentenyltr 88.5 0.16 5.4E-06 55.3 2.1 25 205-229 40-64 (339)
434 1svm_A Large T antigen; AAA+ f 88.3 0.31 1.1E-05 54.3 4.3 27 203-229 167-193 (377)
435 3exa_A TRNA delta(2)-isopenten 88.2 0.23 7.9E-06 53.3 3.1 24 206-229 4-27 (322)
436 1ls1_A Signal recognition part 88.1 0.43 1.5E-05 51.4 5.3 36 204-240 97-132 (295)
437 1ltq_A Polynucleotide kinase; 88.1 0.26 8.9E-06 53.4 3.5 23 206-228 3-25 (301)
438 3foz_A TRNA delta(2)-isopenten 88.0 0.31 1.1E-05 52.2 3.9 25 205-229 10-34 (316)
439 1sq5_A Pantothenate kinase; P- 88.0 0.3 1E-05 53.1 3.9 28 203-230 78-105 (308)
440 1g8f_A Sulfate adenylyltransfe 87.9 0.39 1.3E-05 55.7 5.0 28 204-231 394-421 (511)
441 1nlf_A Regulatory protein REPA 87.9 0.46 1.6E-05 50.8 5.3 26 206-231 31-56 (279)
442 2afh_E Nitrogenase iron protei 87.8 0.48 1.7E-05 50.9 5.4 34 206-239 3-36 (289)
443 1q3t_A Cytidylate kinase; nucl 87.7 0.31 1E-05 50.7 3.7 26 204-229 15-40 (236)
444 2p67_A LAO/AO transport system 87.7 0.7 2.4E-05 51.0 6.8 31 202-232 53-83 (341)
445 3lnc_A Guanylate kinase, GMP k 87.7 0.18 6.1E-06 52.3 1.8 24 206-229 28-52 (231)
446 3b85_A Phosphate starvation-in 87.5 0.25 8.5E-06 50.2 2.7 23 206-228 23-45 (208)
447 4edh_A DTMP kinase, thymidylat 87.4 0.85 2.9E-05 46.4 6.7 28 205-232 6-33 (213)
448 4eaq_A DTMP kinase, thymidylat 87.3 0.36 1.2E-05 49.9 3.9 28 204-231 25-52 (229)
449 2qmh_A HPR kinase/phosphorylas 87.3 0.26 8.9E-06 49.0 2.6 23 206-228 35-57 (205)
450 2v3c_C SRP54, signal recogniti 87.2 0.27 9.1E-06 56.1 3.0 35 205-239 99-133 (432)
451 2onk_A Molybdate/tungstate ABC 87.1 0.29 1E-05 50.9 3.1 22 206-227 25-46 (240)
452 2axn_A 6-phosphofructo-2-kinas 87.1 0.52 1.8E-05 55.2 5.5 30 204-233 34-63 (520)
453 1pzn_A RAD51, DNA repair and r 86.9 0.34 1.2E-05 53.6 3.7 38 192-229 118-155 (349)
454 2pcj_A ABC transporter, lipopr 86.9 0.28 9.4E-06 50.6 2.7 22 206-227 31-52 (224)
455 3zvl_A Bifunctional polynucleo 86.6 0.25 8.6E-06 56.2 2.4 27 203-229 256-282 (416)
456 2ocp_A DGK, deoxyguanosine kin 86.6 0.38 1.3E-05 50.2 3.6 26 205-230 2-27 (241)
457 3tif_A Uncharacterized ABC tra 86.6 0.28 9.6E-06 50.9 2.6 22 206-227 32-53 (235)
458 1oix_A RAS-related protein RAB 86.6 0.36 1.2E-05 48.2 3.4 24 205-228 29-52 (191)
459 3fdi_A Uncharacterized protein 86.6 0.38 1.3E-05 48.6 3.5 25 206-230 7-31 (201)
460 3zq6_A Putative arsenical pump 86.4 0.73 2.5E-05 50.4 5.9 36 205-240 14-49 (324)
461 3eph_A TRNA isopentenyltransfe 86.3 0.42 1.4E-05 53.3 3.9 25 206-230 3-27 (409)
462 1c9k_A COBU, adenosylcobinamid 86.3 0.42 1.4E-05 47.0 3.5 29 208-240 2-30 (180)
463 4dzz_A Plasmid partitioning pr 86.2 0.62 2.1E-05 47.0 4.9 35 206-240 2-37 (206)
464 3cmu_A Protein RECA, recombina 86.1 1 3.5E-05 60.3 8.0 50 191-240 1412-1462(2050)
465 2dyk_A GTP-binding protein; GT 86.1 0.44 1.5E-05 45.6 3.5 23 206-228 2-24 (161)
466 1ypw_A Transitional endoplasmi 86.1 0.37 1.3E-05 59.8 3.7 52 182-233 477-539 (806)
467 2cbz_A Multidrug resistance-as 86.0 0.32 1.1E-05 50.6 2.6 23 206-228 32-54 (237)
468 4hlc_A DTMP kinase, thymidylat 86.0 0.65 2.2E-05 47.0 4.9 29 206-234 3-31 (205)
469 1q57_A DNA primase/helicase; d 85.9 1 3.5E-05 52.7 7.2 55 204-264 241-296 (503)
470 2d2e_A SUFC protein; ABC-ATPas 85.8 0.38 1.3E-05 50.5 3.1 22 206-227 30-51 (250)
471 2wji_A Ferrous iron transport 85.8 0.43 1.5E-05 46.2 3.3 22 206-227 4-25 (165)
472 3gfo_A Cobalt import ATP-bindi 85.8 0.33 1.1E-05 51.7 2.6 22 206-227 35-56 (275)
473 2qm8_A GTPase/ATPase; G protei 85.6 1.1 3.6E-05 49.3 6.7 29 203-231 53-81 (337)
474 3cr8_A Sulfate adenylyltranfer 85.6 0.56 1.9E-05 55.1 4.7 27 205-231 369-395 (552)
475 2ged_A SR-beta, signal recogni 85.6 0.62 2.1E-05 46.3 4.5 24 205-228 48-71 (193)
476 1b0u_A Histidine permease; ABC 85.5 0.34 1.2E-05 51.2 2.6 23 205-227 32-54 (262)
477 2zu0_C Probable ATP-dependent 85.5 0.4 1.4E-05 50.8 3.1 23 206-228 47-69 (267)
478 2f9l_A RAB11B, member RAS onco 85.5 0.4 1.4E-05 48.2 3.0 24 205-228 5-28 (199)
479 4g1u_C Hemin import ATP-bindin 85.4 0.35 1.2E-05 51.2 2.6 22 206-227 38-59 (266)
480 1ji0_A ABC transporter; ATP bi 85.4 0.35 1.2E-05 50.4 2.6 22 206-227 33-54 (240)
481 2ffh_A Protein (FFH); SRP54, s 85.3 0.78 2.7E-05 51.9 5.5 29 204-232 97-125 (425)
482 3ea0_A ATPase, para family; al 85.3 0.87 3E-05 47.3 5.7 35 205-239 4-40 (245)
483 1sgw_A Putative ABC transporte 85.3 0.31 1.1E-05 49.7 2.0 22 206-227 36-57 (214)
484 3v9p_A DTMP kinase, thymidylat 85.2 0.9 3.1E-05 46.7 5.5 28 205-232 25-52 (227)
485 2olj_A Amino acid ABC transpor 85.2 0.36 1.2E-05 50.9 2.6 23 205-227 50-72 (263)
486 1g6h_A High-affinity branched- 85.2 0.36 1.2E-05 50.9 2.6 22 206-227 34-55 (257)
487 3lda_A DNA repair protein RAD5 85.2 0.64 2.2E-05 52.3 4.7 51 190-240 163-219 (400)
488 1mv5_A LMRA, multidrug resista 85.2 0.39 1.3E-05 50.1 2.8 23 205-227 28-50 (243)
489 2pze_A Cystic fibrosis transme 85.1 0.37 1.3E-05 49.8 2.6 23 206-228 35-57 (229)
490 3lv8_A DTMP kinase, thymidylat 85.1 1 3.5E-05 46.5 6.0 35 205-239 27-62 (236)
491 2zej_A Dardarin, leucine-rich 85.1 0.35 1.2E-05 47.9 2.3 21 207-227 4-24 (184)
492 2ce2_X GTPase HRAS; signaling 85.1 0.46 1.6E-05 45.6 3.1 22 207-228 5-26 (166)
493 2v9p_A Replication protein E1; 85.0 0.42 1.5E-05 51.4 3.1 26 204-229 125-150 (305)
494 2ff7_A Alpha-hemolysin translo 85.0 0.38 1.3E-05 50.4 2.6 22 206-227 36-57 (247)
495 4tmk_A Protein (thymidylate ki 85.0 1.1 3.9E-05 45.4 6.1 34 206-239 4-38 (213)
496 3ld9_A DTMP kinase, thymidylat 84.9 1.1 3.7E-05 45.8 6.0 28 204-231 20-47 (223)
497 3hjn_A DTMP kinase, thymidylat 84.9 1.3 4.3E-05 44.5 6.4 34 207-240 2-35 (197)
498 1vpl_A ABC transporter, ATP-bi 84.9 0.39 1.3E-05 50.5 2.6 22 206-227 42-63 (256)
499 3kjh_A CO dehydrogenase/acetyl 84.8 0.65 2.2E-05 48.5 4.4 32 208-239 3-34 (254)
500 2ghi_A Transport protein; mult 84.6 0.4 1.4E-05 50.6 2.6 23 206-228 47-69 (260)
No 1
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=2.1e-48 Score=381.61 Aligned_cols=170 Identities=46% Similarity=0.756 Sum_probs=145.6
Q ss_pred CCCCCCcccEEEcCccccccCchHHHHHHHHHhCCCeEEeeCccccCCCcchHHHHHHHhhcceEEEEecCCccCchhhH
Q 044579 3 SSSSQSKYEVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELKKGDEISPALSNAIESSDISIIIFSKGYASSRWCL 82 (1103)
Q Consensus 3 s~~~~~~~dvfis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~wc~ 82 (1103)
|||.+++|||||||||+|+|++|++||+++|+++||++|+|++++++|+.|.++|.+||++|+++|||+|+||++|+||+
T Consensus 2 sss~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl 81 (176)
T 3jrn_A 2 SSHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCL 81 (176)
T ss_dssp -----CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHH
T ss_pred CCCCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHH
Confidence 44568999999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCcEEEEEEeeeCCcccccccCchhhhhhhcccCCc-hhHHHHHHHHHHhccCCCccCCCCcchHHHH
Q 044579 83 NELVKILDCKKMNAQIVIPVFYQVDPSDVRKQRGSFGEAFVNHDNNFP-GKVQKWRHALTEASNLSGYDSTESRNDAELV 161 (1103)
Q Consensus 83 ~El~~~~~~~~~~~~~v~pif~~v~p~~vr~~~g~~~~~~~~~~~~~~-~~~~~w~~al~~~~~~~g~~~~~~~~e~~~i 161 (1103)
+||++|++|.+.++++|+||||+|+|++||+|+|+||++|++|+++.. +++++||.||++||+++||++. ++|+++|
T Consensus 82 ~EL~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~~~~~~~~~Wr~AL~~va~~~G~~~~--~~e~~~i 159 (176)
T 3jrn_A 82 DELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASREDPEKVLKWRQALTNFAQLSGDCSG--DDDSKLV 159 (176)
T ss_dssp HHHHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSCCEECC--SCHHHHH
T ss_pred HHHHHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhccCHHHHHHHHHHHHHHhcccceecC--CCHHHHH
Confidence 999999999988999999999999999999999999999999998855 8999999999999999999984 6799999
Q ss_pred HHHHHHHHHhccc
Q 044579 162 EKIVEDISKKLED 174 (1103)
Q Consensus 162 ~~iv~~i~~~l~~ 174 (1103)
++||++|.++|+.
T Consensus 160 ~~Iv~~v~~~l~~ 172 (176)
T 3jrn_A 160 DKIANEISNKKTI 172 (176)
T ss_dssp HHHHHHHHTTCC-
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999987
No 2
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=1.6e-47 Score=380.29 Aligned_cols=169 Identities=43% Similarity=0.774 Sum_probs=161.6
Q ss_pred CCCcccEEEcCccccccCchHHHHHHHHHhCCCeEEeeCccccCCCcchHHHHHHHhhcceEEEEecCCccCchhhHHHH
Q 044579 6 SQSKYEVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELKKGDEISPALSNAIESSDISIIIFSKGYASSRWCLNEL 85 (1103)
Q Consensus 6 ~~~~~dvfis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~wc~~El 85 (1103)
+.++|||||||||+|+|++|++||+++|+++||++|+|++++++|+.|.++|.+||++|+++|||||+||++|.||++||
T Consensus 32 ~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~EL 111 (204)
T 3ozi_A 32 PSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMEL 111 (204)
T ss_dssp --CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHHHH
T ss_pred CCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHHHH
Confidence 46899999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred HHHHHhhhc-CCcEEEEEEeeeCCcccccccCchhhhhhhcccCCc-hhHHHHHHHHHHhccCCCccCCCCcchHHHHHH
Q 044579 86 VKILDCKKM-NAQIVIPVFYQVDPSDVRKQRGSFGEAFVNHDNNFP-GKVQKWRHALTEASNLSGYDSTESRNDAELVEK 163 (1103)
Q Consensus 86 ~~~~~~~~~-~~~~v~pif~~v~p~~vr~~~g~~~~~~~~~~~~~~-~~~~~w~~al~~~~~~~g~~~~~~~~e~~~i~~ 163 (1103)
++|++|++. .+++|+||||+|+|++||+|+|+||+||++|++++. +++++||.||++||+++||++.++..|+++|++
T Consensus 112 ~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~~~~v~~Wr~AL~~va~lsG~~~~~~~~e~~~i~~ 191 (204)
T 3ozi_A 112 AEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQTIQNWKDALKKVGDLKGWHIGKNDKQGAIADK 191 (204)
T ss_dssp HHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSCHHHHHHHHHHHHHHHTSCBEEECTTSCHHHHHHH
T ss_pred HHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhCHHHHHHHHHHHHHHhccCceecCCCCCHHHHHHH
Confidence 999999865 689999999999999999999999999999999887 899999999999999999999988999999999
Q ss_pred HHHHHHHhccc
Q 044579 164 IVEDISKKLED 174 (1103)
Q Consensus 164 iv~~i~~~l~~ 174 (1103)
||++|+++++.
T Consensus 192 Iv~di~~kl~~ 202 (204)
T 3ozi_A 192 VSADIWSHISK 202 (204)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcc
Confidence 99999999864
No 3
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=2.3e-38 Score=382.06 Aligned_cols=296 Identities=15% Similarity=0.156 Sum_probs=232.2
Q ss_pred cccchhHHHHHHhhccc-CCCeEEEEEeecCCChhHHHHHHHHH----HHhccCCceEEEEechhhhcccChHHHHHHHH
Q 044579 185 VGLNTRIEEMKSLLCLE-SHDVRIVGIWGMGGIGKTTIASVVFH----QISRHFQGKCFMANVREKANKMGVIHVRDEVI 259 (1103)
Q Consensus 185 vGr~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~----~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ll 259 (1103)
|||+.++++|.++|..+ ..++++|+|+||||+||||||+++|+ +++.+|+.++|+. +++... .++..++..++
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~-vs~~~~-~~~~~~~~~il 208 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK-DSGTAP-KSTFDLFTDIL 208 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE-CCCCST-THHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE-ECCCCC-CCHHHHHHHHH
Confidence 59999999999999754 34689999999999999999999997 6889999999994 433221 46788899999
Q ss_pred HhhhCCCC--ccccccc------hHHHHHhhcCC-ceEEEEeCCCCCHhHHHHHhCCCCccCCCcEEEEEeCchhhHhhc
Q 044579 260 SQVLGENL--KIGTLIV------PQNIKKRLQRV-KVLIVLDDVNDEFTQLESLAGGVDRFSPGSRIVITTRDKQVLDKC 330 (1103)
Q Consensus 260 ~~l~~~~~--~~~~~~~------~~~l~~~L~~k-~~LlVLDdv~~~~~~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~~ 330 (1103)
.++..... ...+... ...+++.|+++ |+|||||||| +.+++ .+.. .+||+||||||++.++..+
T Consensus 209 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~-~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~ 281 (549)
T 2a5y_B 209 LMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVV-QEETI-RWAQ-----ELRLRCLVTTRDVEISNAA 281 (549)
T ss_dssp HHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEEC-CHHHH-HHHH-----HTTCEEEEEESBGGGGGGC
T ss_pred HHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCC-Cchhh-cccc-----cCCCEEEEEcCCHHHHHHc
Confidence 98875432 1222111 23888899996 9999999999 76665 3322 2899999999999998877
Q ss_pred C-cceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhHHHHHHhhcCCCCHHHHHHHHHH-hhhcC
Q 044579 331 G-VSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLALEVLGSSLYQKSKQQWKVKLQN-LKLIS 408 (1103)
Q Consensus 331 ~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~lg~~L~~~~~~~w~~~l~~-l~~~~ 408 (1103)
+ ...+|+|++|+.+||++||.++||.... .+...+++++|+++|+|+||||+++|+.++.+.. +|...+.. +....
T Consensus 282 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~l~~~l~~~~ 359 (549)
T 2a5y_B 282 SQTCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQLNNKLESRG 359 (549)
T ss_dssp CSCEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHHHHHHHHHHC
T ss_pred CCCCeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccchH-HHHHHhHHHhhccc
Confidence 5 4578999999999999999999986543 3577889999999999999999999999987742 33333332 23325
Q ss_pred CcchhhHHHhhhcCCCHHHHHHHh-----------hhhccCCCCCHHHHHHHhc--C--------------CCchHHHhh
Q 044579 409 EPNIYNVLKISYDDLNPEEKKIFL-----------DIACFFKGEDADFVTRIQD--D--------------PTSLDNIVD 461 (1103)
Q Consensus 409 ~~~i~~~l~~sy~~L~~~~k~~fl-----------~~a~f~~~~~~~~~~~~~~--~--------------~~~l~~L~~ 461 (1103)
...+..++.+||+.||++.|.||+ +||+||+++.++....+.. + ..++++|++
T Consensus 360 ~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~~ 439 (549)
T 2a5y_B 360 LVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIPVKLWSCVIPVDICSNEEEQLDDEVADRLKRLSK 439 (549)
T ss_dssp SSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEEHHHHHHHSCC-------CCCTHHHHHHHHHTTT
T ss_pred HHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeeeeeeeeeeccceeccCCCCCCHHHHHHHHHHHHH
Confidence 667889999999999999999999 9999999988762212221 0 237999999
Q ss_pred ccCeeEcC---CCeEEechhHHHHHHHhhhccc
Q 044579 462 KSLITISD---ENRLQMHDLLQEMGQTIVRQKS 491 (1103)
Q Consensus 462 ~sLi~~~~---~~~~~mHdlv~~~~~~i~~~e~ 491 (1103)
+||++... ..+|.|||++|++|++++.+++
T Consensus 440 rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 440 RGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp BSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred cCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 99998764 3479999999999999987764
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=8.3e-33 Score=370.46 Aligned_cols=302 Identities=21% Similarity=0.300 Sum_probs=234.8
Q ss_pred CCCCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHH---HhccCCceEEEEechhhhcccChH
Q 044579 176 SESTDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQ---ISRHFQGKCFMANVREKANKMGVI 252 (1103)
Q Consensus 176 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~---~~~~F~~~~~~~~~~~~~~~~~~~ 252 (1103)
..|..+..||||++++++|.++|....+++++|+|+||||+||||||+++|++ ...+|...+||.++++.. .....
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~ 196 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQD-KSGLL 196 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCC-HHHHH
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcC-chHHH
Confidence 46667788999999999999999766678899999999999999999999985 466687777665554421 22334
Q ss_pred HHHHHHHHhhhCCCCcccc----ccch-HHHHHhhcCC--ceEEEEeCCCCCHhHHHHHhCCCCccCCCcEEEEEeCchh
Q 044579 253 HVRDEVISQVLGENLKIGT----LIVP-QNIKKRLQRV--KVLIVLDDVNDEFTQLESLAGGVDRFSPGSRIVITTRDKQ 325 (1103)
Q Consensus 253 ~~~~~ll~~l~~~~~~~~~----~~~~-~~l~~~L~~k--~~LlVLDdv~~~~~~l~~l~~~~~~~~~gs~IIiTTR~~~ 325 (1103)
.....++..+......... .... ..++..+.++ |+|||||||| +..+++.+ ++||+||||||++.
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~-~~~~~~~~-------~~~~~ilvTtR~~~ 268 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVW-DPWVLKAF-------DNQCQILLTTRDKS 268 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCC-CHHHHTTT-------CSSCEEEEEESSTT
T ss_pred HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCC-CHHHHHhh-------cCCCEEEEEcCCHH
Confidence 4455566665443321111 1111 2566667666 9999999999 77776653 68999999999999
Q ss_pred hHhh-cCcceEEEccC-CChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhHHHHHHhhcCCCCHHHHHHHHHH
Q 044579 326 VLDK-CGVSYIYKVKR-LEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLALEVLGSSLYQKSKQQWKVKLQN 403 (1103)
Q Consensus 326 v~~~-~~~~~~~~l~~-L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~lg~~L~~~~~~~w~~~l~~ 403 (1103)
++.. .+....++++. |+.+||++||...++.. .+.+.+.+++|+++|+|+||||+++|++|+.+. ..|...++.
T Consensus 269 ~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~---~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~ 344 (1249)
T 3sfz_A 269 VTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK---KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQ 344 (1249)
T ss_dssp TTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC---STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHH
T ss_pred HHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC---hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHH
Confidence 8754 45667899996 99999999999988443 233446789999999999999999999998765 578888888
Q ss_pred hhhcCC-----------cchhhHHHhhhcCCCHHHHHHHhhhhccCCCCCH--HHHHHHhcC-----CCchHHHhhccCe
Q 044579 404 LKLISE-----------PNIYNVLKISYDDLNPEEKKIFLDIACFFKGEDA--DFVTRIQDD-----PTSLDNIVDKSLI 465 (1103)
Q Consensus 404 l~~~~~-----------~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~~~--~~~~~~~~~-----~~~l~~L~~~sLi 465 (1103)
+..... ..+..+|.+||+.|++++|+||+++|+||.++.+ +.+..++.. ..++++|+++|||
T Consensus 345 l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~ 424 (1249)
T 3sfz_A 345 LQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLL 424 (1249)
T ss_dssp HHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSC
T ss_pred HhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccce
Confidence 765431 3488999999999999999999999999998754 455566654 6789999999999
Q ss_pred eEcCCCe---EEechhHHHHHHHhhhcc
Q 044579 466 TISDENR---LQMHDLLQEMGQTIVRQK 490 (1103)
Q Consensus 466 ~~~~~~~---~~mHdlv~~~~~~i~~~e 490 (1103)
+...++. |+||+++|+++++...++
T Consensus 425 ~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 425 FCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp EEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred EEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 9876554 999999999999987665
No 5
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.98 E-value=1.9e-32 Score=331.25 Aligned_cols=274 Identities=19% Similarity=0.219 Sum_probs=204.9
Q ss_pred CCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHH--HHhccCCceEEEEechhhhcccChHHHHHHHH
Q 044579 182 DGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFH--QISRHFQGKCFMANVREKANKMGVIHVRDEVI 259 (1103)
Q Consensus 182 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~--~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ll 259 (1103)
+..|||++++++|.++|... +++++|+|+||||+||||||+++|+ +++.+|+..+||.++++ ..+...+...++
T Consensus 128 k~~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~---~~d~~~IL~~Ll 203 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN---CNSPETVLEMLQ 203 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCC---SSSHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCC---CCCHHHHHHHHH
Confidence 44599999999999998742 3478999999999999999999997 57889998544444543 344555555544
Q ss_pred Hh---hhCCCC-ccc-------cccc-hHHHHHhh---cCCceEEEEeCCCCCHhHHHHHhCCCCccCCCcEEEEEeCch
Q 044579 260 SQ---VLGENL-KIG-------TLIV-PQNIKKRL---QRVKVLIVLDDVNDEFTQLESLAGGVDRFSPGSRIVITTRDK 324 (1103)
Q Consensus 260 ~~---l~~~~~-~~~-------~~~~-~~~l~~~L---~~k~~LlVLDdv~~~~~~l~~l~~~~~~~~~gs~IIiTTR~~ 324 (1103)
.. +..... ... +.+. ...+++.| +++|+|||||||| +.++|+.+ ++||+||||||++
T Consensus 204 ~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVw-d~eqLe~f-------~pGSRILVTTRd~ 275 (1221)
T 1vt4_I 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ-NAKAWNAF-------NLSCKILLTTRFK 275 (1221)
T ss_dssp HHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCC-CHHHHHHH-------HSSCCEEEECSCS
T ss_pred HHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcC-hHHHHHhh-------CCCeEEEEeccCh
Confidence 43 211100 000 0011 11555554 6899999999999 78888875 2799999999999
Q ss_pred hhHhhcCcceEEEcc------CCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhHHHHHHhhcCCC--CHHH
Q 044579 325 QVLDKCGVSYIYKVK------RLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLALEVLGSSLYQK--SKQQ 396 (1103)
Q Consensus 325 ~v~~~~~~~~~~~l~------~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~lg~~L~~~--~~~~ 396 (1103)
.++..+.....|+|+ +|+.+||++||+++. +.. . .++..++ |+|+||||+++|+.|+++ +.++
T Consensus 276 ~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~--~---eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~ee 346 (1221)
T 1vt4_I 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR--P---QDLPREV---LTTNPRRLSIIAESIRDGLATWDN 346 (1221)
T ss_dssp HHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC--T---TTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHH
T ss_pred HHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC--H---HHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHH
Confidence 987644433356666 999999999999984 322 1 1233333 999999999999999876 7788
Q ss_pred HHHHHHHhhhcCCcchhhHHHhhhcCCCHHH-HHHHhhhhccCCCCCH--HHHHHHhcC------CCchHHHhhccCeeE
Q 044579 397 WKVKLQNLKLISEPNIYNVLKISYDDLNPEE-KKIFLDIACFFKGEDA--DFVTRIQDD------PTSLDNIVDKSLITI 467 (1103)
Q Consensus 397 w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~-k~~fl~~a~f~~~~~~--~~~~~~~~~------~~~l~~L~~~sLi~~ 467 (1103)
|... ....+..+|+.||+.|++++ |+||+++|+||.+..+ +.+..+|.. ..++++|+++|||+.
T Consensus 347 W~~~-------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~ 419 (1221)
T 1vt4_I 347 WKHV-------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419 (1221)
T ss_dssp HHHC-------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSB
T ss_pred HhcC-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEE
Confidence 8753 34679999999999999999 9999999999998765 445566654 367899999999998
Q ss_pred cC-CCeEEechhHHHHH
Q 044579 468 SD-ENRLQMHDLLQEMG 483 (1103)
Q Consensus 468 ~~-~~~~~mHdlv~~~~ 483 (1103)
.. .++|+|||++++++
T Consensus 420 d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 420 QPKESTISIPSIYLELK 436 (1221)
T ss_dssp CSSSSEEBCCCHHHHHH
T ss_pred eCCCCEEEehHHHHHHh
Confidence 63 56899999998854
No 6
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.97 E-value=9.9e-32 Score=329.57 Aligned_cols=332 Identities=20% Similarity=0.285 Sum_probs=235.9
Q ss_pred CCCCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHH---hccCCc-eEEEEechhhhcccCh
Q 044579 176 SESTDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQI---SRHFQG-KCFMANVREKANKMGV 251 (1103)
Q Consensus 176 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~---~~~F~~-~~~~~~~~~~~~~~~~ 251 (1103)
..|..+..||||++++++|.++|....++.++|+|+||||+||||||++++++. +.+|+. ++|+. +.... ...+
T Consensus 118 ~~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~-~~~~~-~~~~ 195 (591)
T 1z6t_A 118 GVPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVS-VGKQD-KSGL 195 (591)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEE-EESCC-HHHH
T ss_pred CCCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEE-CCCCc-hHHH
Confidence 456677889999999999999997655678999999999999999999999743 778964 55554 43321 1112
Q ss_pred HHHHHHHHHhhhCCCC----ccccccchH-HHHHhhcC--CceEEEEeCCCCCHhHHHHHhCCCCccCCCcEEEEEeCch
Q 044579 252 IHVRDEVISQVLGENL----KIGTLIVPQ-NIKKRLQR--VKVLIVLDDVNDEFTQLESLAGGVDRFSPGSRIVITTRDK 324 (1103)
Q Consensus 252 ~~~~~~ll~~l~~~~~----~~~~~~~~~-~l~~~L~~--k~~LlVLDdv~~~~~~l~~l~~~~~~~~~gs~IIiTTR~~ 324 (1103)
......+...+..... ...+..... .++..+.+ +++|||||||| +..+++. +++|++||||||++
T Consensus 196 ~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~-~~~~l~~-------l~~~~~ilvTsR~~ 267 (591)
T 1z6t_A 196 LMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVW-DSWVLKA-------FDSQCQILLTTRDK 267 (591)
T ss_dssp HHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEEC-CHHHHHT-------TCSSCEEEEEESCG
T ss_pred HHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCC-CHHHHHH-------hcCCCeEEEECCCc
Confidence 2222223333321111 111111112 56666655 78999999999 7666654 36799999999999
Q ss_pred hhHhhcCcceEEEc---cCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhHHHHHHhhcCCCCHHHHHHHH
Q 044579 325 QVLDKCGVSYIYKV---KRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLALEVLGSSLYQKSKQQWKVKL 401 (1103)
Q Consensus 325 ~v~~~~~~~~~~~l---~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~lg~~L~~~~~~~w~~~l 401 (1103)
.++..+. ...+++ ++|+.+||++||...++.. .....+.+.+|+++|+|+||||+++|+.++... ..|...+
T Consensus 268 ~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l 342 (591)
T 1z6t_A 268 SVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYL 342 (591)
T ss_dssp GGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHH
T ss_pred HHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHH
Confidence 8876543 345565 4899999999999988642 222345789999999999999999999997653 3688888
Q ss_pred HHhhhcC-----------CcchhhHHHhhhcCCCHHHHHHHhhhhccCCCCCH--HHHHHHhcC-----CCchHHHhhcc
Q 044579 402 QNLKLIS-----------EPNIYNVLKISYDDLNPEEKKIFLDIACFFKGEDA--DFVTRIQDD-----PTSLDNIVDKS 463 (1103)
Q Consensus 402 ~~l~~~~-----------~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~~~--~~~~~~~~~-----~~~l~~L~~~s 463 (1103)
+.+.... ...+..++..||+.|+++.|.||+++|+||.+..+ +.+..++.. ...++.|+++|
T Consensus 343 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~ 422 (591)
T 1z6t_A 343 KQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKS 422 (591)
T ss_dssp HHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCc
Confidence 8776432 23588999999999999999999999999987654 455665544 56799999999
Q ss_pred CeeEcCC---CeEEechhHHHHHHHhhhccc----------------------cCcceeecchhhHHHHhcccccccccc
Q 044579 464 LITISDE---NRLQMHDLLQEMGQTIVRQKS----------------------ISKRTRLWDHEDIYHVLKKNKGTEKIE 518 (1103)
Q Consensus 464 Li~~~~~---~~~~mHdlv~~~~~~i~~~e~----------------------~~~~~rl~~~~~i~~vl~~~~~~~~v~ 518 (1103)
||....+ .+|.||+++|+++++....+. ++.+..+|..+.+.|++..+... .+.
T Consensus 423 Ll~~~~~~~~~~~~~H~lv~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~a~~~~-~~~ 501 (591)
T 1z6t_A 423 LLFCDRNGKSFRYYLHDLQVDFLTEKNCSQLQDLHKKIITQFQRYHQPHTLSPDQEDCMYWYNFLAYHMASAKMHK-ELC 501 (591)
T ss_dssp SSEEEEETTEEEEECCHHHHHHHHHHTGGGHHHHHHHHHHHHTTTCCGGGCCTTSTTHHHHHHHHHHHHHHTTCHH-HHH
T ss_pred CeEEecCCCccEEEEcHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCCCEEeehhhHHHHHHhcCCHH-HHH
Confidence 9986542 269999999999988732110 22344556677788877755443 344
Q ss_pred ccccc
Q 044579 519 GIFLD 523 (1103)
Q Consensus 519 ~i~L~ 523 (1103)
.+..+
T Consensus 502 ~l~~~ 506 (591)
T 1z6t_A 502 ALMFS 506 (591)
T ss_dssp HHHSC
T ss_pred HHHhC
Confidence 44443
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=4.4e-31 Score=333.18 Aligned_cols=344 Identities=20% Similarity=0.207 Sum_probs=214.7
Q ss_pred cccCCCCcceeechHhhhcCcccceEEEecCCCCCccccCcceecCCCcccCCCceEEEEEcCCCCCCCCCccccccccc
Q 044579 521 FLDLSKTKDIHLSSQAFANMSNLRLLKFYMPERGGVPIMSSKVHLDQGLEDLPEKLRYLHWHGYPLKTLPFDFELENLIE 600 (1103)
Q Consensus 521 ~L~l~~~~~~~~~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~ 600 (1103)
.|+++++......+. |.++++|++|++++|.+.+ .++..+..++ +|++|++++|.+........+++|++
T Consensus 204 ~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~--------~~~~~l~~l~-~L~~L~Ls~n~l~~~~~~~~l~~L~~ 273 (768)
T 3rgz_A 204 FLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSG--------DFSRAISTCT-ELKLLNISSNQFVGPIPPLPLKSLQY 273 (768)
T ss_dssp EEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCS--------CHHHHTTTCS-SCCEEECCSSCCEESCCCCCCTTCCE
T ss_pred EEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCC--------cccHHHhcCC-CCCEEECCCCcccCccCccccCCCCE
Confidence 345555544443333 6666666666666665431 1233344444 66666666666653322235666666
Q ss_pred ccccccccc-ccccccccC-CcceEecCCCCCCCccCCC-CCCCCCccEEEecCCCCCCccccc-ccCCCcccEEEccCC
Q 044579 601 LRLPYSKVE-QIWEGKKEA-SKLKSIDLCHSQHLIRMPD-LSEIPNLERTNFFNCTNLVLVPSS-IQNFNNLSMLCFRGC 676 (1103)
Q Consensus 601 L~L~~n~i~-~l~~~~~~l-~~L~~L~L~~~~~~~~~p~-l~~l~~L~~L~L~~~~~l~~~~~~-i~~l~~L~~L~L~~~ 676 (1103)
|+|++|.+. .+|..+..+ ++|++|+|++|.+...+|. ++.+++|++|++++|.....+|.. ++++++|++|++++|
T Consensus 274 L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n 353 (768)
T 3rgz_A 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353 (768)
T ss_dssp EECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSS
T ss_pred EECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCC
Confidence 666666666 556555543 6677777766665555553 666666777777666555555544 666667777777666
Q ss_pred CCCcccCCCC-CCC-CCcEEEccCCcCCCcCCCc-----CCCccEEecCCccce-ecCccccCCCCCCEEecCCCccccc
Q 044579 677 ESLRSFPRDI-HFV-SPVTIDFSFCVNLTEFPKI-----SGKITELNLCDTAIE-EVPSSVECLTNLKELYLSRCSTLNR 748 (1103)
Q Consensus 677 ~~l~~lp~~~-~l~-~L~~L~l~~c~~l~~~~~~-----~~~L~~L~L~~~~i~-~lp~~~~~l~~L~~L~L~~~~~~~~ 748 (1103)
.....+|..+ .+. +|+.|++++|.....+|.. ..+|++|++++|.+. .+|..+.++++|+.|+|++|.+.+.
T Consensus 354 ~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 433 (768)
T 3rgz_A 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT 433 (768)
T ss_dssp EEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESC
T ss_pred ccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCc
Confidence 5555566555 343 6677777666544444432 335667777777766 5666677777777777777776667
Q ss_pred ccccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCcc-ccCc
Q 044579 749 LSTSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFE-SLPS 827 (1103)
Q Consensus 749 lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~-~lp~ 827 (1103)
+|..++.+++|+.|++++|..... +|..+..+++|++|+|++|.+.+.+ +..+..+++|+.|+|++|.++ .+|.
T Consensus 434 ~p~~l~~l~~L~~L~L~~n~l~~~---~p~~~~~l~~L~~L~L~~N~l~~~~--p~~l~~l~~L~~L~L~~N~l~~~~p~ 508 (768)
T 3rgz_A 434 IPSSLGSLSKLRDLKLWLNMLEGE---IPQELMYVKTLETLILDFNDLTGEI--PSGLSNCTNLNWISLSNNRLTGEIPK 508 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSC---CCGGGGGCTTCCEEECCSSCCCSCC--CGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred ccHHHhcCCCCCEEECCCCcccCc---CCHHHcCCCCceEEEecCCcccCcC--CHHHhcCCCCCEEEccCCccCCcCCh
Confidence 777777777777777777654333 6666677777777777777766665 334566677777777777766 6666
Q ss_pred cccCCCCCCEEeccCCcCCcccCccccccccceecccccccccCCCCchhhh
Q 044579 828 SIKQLSQLRKLDLSNCNMLLSLPELPLFLEDLEARNCKRLQFLPEIPSCLEE 879 (1103)
Q Consensus 828 ~i~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~~~~c~~l~~~~~~p~~l~~ 879 (1103)
++..+++|+.|+|++|++.+.+|..+..++.|..+++.+|.+.+.+|.++..
T Consensus 509 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~ 560 (768)
T 3rgz_A 509 WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560 (768)
T ss_dssp GGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGT
T ss_pred HHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhc
Confidence 7777777777777777777777766666666666666677666666665443
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=8.7e-31 Score=330.49 Aligned_cols=359 Identities=21% Similarity=0.195 Sum_probs=244.7
Q ss_pred cccCCCCcceeechHhhhcCcccceEEEecCCCCCccccCcceecCCC-cccCCCceEEEEEcCCCCC-CCCCcc-ccc-
Q 044579 521 FLDLSKTKDIHLSSQAFANMSNLRLLKFYMPERGGVPIMSSKVHLDQG-LEDLPEKLRYLHWHGYPLK-TLPFDF-ELE- 596 (1103)
Q Consensus 521 ~L~l~~~~~~~~~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~l~~~-l~~l~~~Lr~L~l~~~~l~-~lp~~~-~l~- 596 (1103)
.|+++++......+..|.++++|+.|++++|.+. ..+|.. +..++ +|++|++++|.+. .+|..+ .+.
T Consensus 298 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~--------~~ip~~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~ 368 (768)
T 3rgz_A 298 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS--------GELPMDTLLKMR-GLKVLDLSFNEFSGELPESLTNLSA 368 (768)
T ss_dssp EEECCSSEEEECCCGGGGGCTTCCEEECCSSEEE--------EECCHHHHTTCT-TCCEEECCSSEEEECCCTTHHHHTT
T ss_pred EEECcCCcCCCccchHHhcCCCccEEECCCCccc--------CcCCHHHHhcCC-CCCEEeCcCCccCccccHHHHhhhc
Confidence 4566666666566667777777777777766431 133433 44444 6777777777766 666655 444
Q ss_pred ccccccccccccc-cccccccc--CCcceEecCCCCCCCccCCC-CCCCCCccEEEecCCCCCCcccccccCCCcccEEE
Q 044579 597 NLIELRLPYSKVE-QIWEGKKE--ASKLKSIDLCHSQHLIRMPD-LSEIPNLERTNFFNCTNLVLVPSSIQNFNNLSMLC 672 (1103)
Q Consensus 597 ~L~~L~L~~n~i~-~l~~~~~~--l~~L~~L~L~~~~~~~~~p~-l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~ 672 (1103)
+|++|+|++|.+. .+|..+.. +++|+.|+|++|.+...+|. +..+++|++|++++|.....+|..++.+++|+.|+
T Consensus 369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 448 (768)
T 3rgz_A 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448 (768)
T ss_dssp TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEE
Confidence 6777777777665 34444444 66677777777766655553 66777777777777666666677777777777777
Q ss_pred ccCCCCCcccCCCC-CCCCCcEEEccCCcCCCcCCCc---CCCccEEecCCccce-ecCccccCCCCCCEEecCCCcccc
Q 044579 673 FRGCESLRSFPRDI-HFVSPVTIDFSFCVNLTEFPKI---SGKITELNLCDTAIE-EVPSSVECLTNLKELYLSRCSTLN 747 (1103)
Q Consensus 673 L~~~~~l~~lp~~~-~l~~L~~L~l~~c~~l~~~~~~---~~~L~~L~L~~~~i~-~lp~~~~~l~~L~~L~L~~~~~~~ 747 (1103)
+++|.....+|..+ .+++|++|++++|.....+|.. ..+|+.|++++|.+. .+|.+++.+++|+.|+|++|.+.+
T Consensus 449 L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 528 (768)
T 3rgz_A 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred CCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccC
Confidence 77766665666655 5677777777776555555543 345667777777776 666677777777777777777777
Q ss_pred cccccccCCCCCcEEeecCCCCCCcc------------------------------------------------------
Q 044579 748 RLSTSICKLKSLHELILSDCLSLETI------------------------------------------------------ 773 (1103)
Q Consensus 748 ~lp~~l~~l~~L~~L~L~~~~~l~~i------------------------------------------------------ 773 (1103)
.+|..++.+++|+.|+|++|.....+
T Consensus 529 ~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 608 (768)
T 3rgz_A 529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 608 (768)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGG
T ss_pred cCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccc
Confidence 77777777777777777766432110
Q ss_pred -------------ccCCccccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCcc-ccCccccCCCCCCEEe
Q 044579 774 -------------TELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFE-SLPSSIKQLSQLRKLD 839 (1103)
Q Consensus 774 -------------~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~ 839 (1103)
+.+|..++.+++|+.|+|++|.+.+.+| ..++.+++|+.|+|++|.++ .+|..++.+++|+.|+
T Consensus 609 ~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip--~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~Ld 686 (768)
T 3rgz_A 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP--KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 686 (768)
T ss_dssp GTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCC--GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred cccccccccceecccCchhhhccccccEEECcCCcccccCC--HHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEE
Confidence 1134455667788888888888888874 45677888888888888888 7888888888888888
Q ss_pred ccCCcCCcccCccccccccceecccccccccCCCCch--hhhhhhcccCCCCC
Q 044579 840 LSNCNMLLSLPELPLFLEDLEARNCKRLQFLPEIPSC--LEELDASMLEKPPK 890 (1103)
Q Consensus 840 L~~n~~l~~lp~~~~~L~~L~~~~c~~l~~~~~~p~~--l~~L~~~~~~~~~~ 890 (1103)
|++|++.+.+|..+..|..|..++.++|++.|.+|.. +..+..+.+.+|+.
T Consensus 687 Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~ 739 (768)
T 3rgz_A 687 LSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPG 739 (768)
T ss_dssp CCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTE
T ss_pred CCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCch
Confidence 8888888888888888888888888888888888863 44444444444443
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=2.4e-29 Score=309.90 Aligned_cols=380 Identities=16% Similarity=0.163 Sum_probs=295.0
Q ss_pred ccccCCCCcceeechHhhhcCcccceEEEecCCCC------C-ccc----------------------------------
Q 044579 520 IFLDLSKTKDIHLSSQAFANMSNLRLLKFYMPERG------G-VPI---------------------------------- 558 (1103)
Q Consensus 520 i~L~l~~~~~~~~~~~~f~~l~~Lr~L~l~~n~~~------~-~~~---------------------------------- 558 (1103)
..++++++......+.+|.++++|++|++++|.+. + ...
T Consensus 84 ~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~ 163 (636)
T 4eco_A 84 TGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIK 163 (636)
T ss_dssp EEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHH
T ss_pred EEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHH
Confidence 35677777776666688999999999999988531 0 000
Q ss_pred ----------------------------cCcceecCCCcccCCCceEEEEEcCCCCCC------------------CCCc
Q 044579 559 ----------------------------MSSKVHLDQGLEDLPEKLRYLHWHGYPLKT------------------LPFD 592 (1103)
Q Consensus 559 ----------------------------~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~------------------lp~~ 592 (1103)
......+|..+..++ +|++|++++|.++. +|..
T Consensus 164 ~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~ 242 (636)
T 4eco_A 164 DCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLT-KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED 242 (636)
T ss_dssp HHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCT-TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC
T ss_pred HHhhcCccccccccccccchhhhhhccccCCCccCCHHHhccc-CCCEEECcCCccccccccccccccccchhcccCchh
Confidence 001223677777776 89999999999998 8987
Q ss_pred cc---ccccccccccccccc-ccccccccCCcceEecCCCCC-CCc-cCCC-CCCC------CCccEEEecCCCCCCccc
Q 044579 593 FE---LENLIELRLPYSKVE-QIWEGKKEASKLKSIDLCHSQ-HLI-RMPD-LSEI------PNLERTNFFNCTNLVLVP 659 (1103)
Q Consensus 593 ~~---l~~L~~L~L~~n~i~-~l~~~~~~l~~L~~L~L~~~~-~~~-~~p~-l~~l------~~L~~L~L~~~~~l~~~~ 659 (1103)
+. +++|++|+|++|++. .+|..+.++++|++|+|++|. +.. .+|. ++.+ ++|++|++++|... .+|
T Consensus 243 l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip 321 (636)
T 4eco_A 243 LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFP 321 (636)
T ss_dssp CCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCC
T ss_pred hhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccC
Confidence 64 899999999999865 788899999999999999998 655 5664 5554 99999999998665 889
Q ss_pred c--cccCCCcccEEEccCCCCCcccCCCC-CCCCCcEEEccCCcCCCcCCCcC---CC-ccEEecCCccceecCccccCC
Q 044579 660 S--SIQNFNNLSMLCFRGCESLRSFPRDI-HFVSPVTIDFSFCVNLTEFPKIS---GK-ITELNLCDTAIEEVPSSVECL 732 (1103)
Q Consensus 660 ~--~i~~l~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~l~~c~~l~~~~~~~---~~-L~~L~L~~~~i~~lp~~~~~l 732 (1103)
. .++++++|+.|++++|...+.+| .+ .+++|+.|++++|. +..+|..+ .+ |+.|++++|.+..+|..+..+
T Consensus 322 ~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~ 399 (636)
T 4eco_A 322 VETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAK 399 (636)
T ss_dssp CHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTT
T ss_pred chhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCcCcccchhhhhc
Confidence 8 89999999999999977666888 45 78899999999975 44677543 45 999999999999999988775
Q ss_pred C--CCCEEecCCCccccccccccc-------CCCCCcEEeecCCCCCCccccCCccc-cCCCCCCeeeccCCCCCCCCCC
Q 044579 733 T--NLKELYLSRCSTLNRLSTSIC-------KLKSLHELILSDCLSLETITELPSSF-ANLEGLEKLVLVGCSKLNKLPH 802 (1103)
Q Consensus 733 ~--~L~~L~L~~~~~~~~lp~~l~-------~l~~L~~L~L~~~~~l~~i~~lp~~~-~~l~~L~~L~L~~~~~~~~lp~ 802 (1103)
+ +|+.|++++|.+.+..|..+. .+++|++|+|++|... .+|..+ ..+++|+.|+|++|.+. .+|.
T Consensus 400 ~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~----~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~ 474 (636)
T 4eco_A 400 SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS----KFPKELFSTGSPLSSINLMGNMLT-EIPK 474 (636)
T ss_dssp CSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC----SCCTHHHHTTCCCSEEECCSSCCS-BCCS
T ss_pred ccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC----cCCHHHHccCCCCCEEECCCCCCC-CcCH
Confidence 5 899999999999998888888 8889999999997543 467654 46899999999999876 6753
Q ss_pred CcccC-------CCCCCCEEeCCCCCccccCcccc--CCCCCCEEeccCCcCCcccCccccccccceeccc------ccc
Q 044579 803 SIDFC-------CLSSLQWLDLSGNNFESLPSSIK--QLSQLRKLDLSNCNMLLSLPELPLFLEDLEARNC------KRL 867 (1103)
Q Consensus 803 ~~~~~-------~l~~L~~L~Ls~n~l~~lp~~i~--~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~~~~c------~~l 867 (1103)
.. +. ++++|+.|+|++|+++.+|..+. .+++|+.|+|++|++.+ +|..+..++.|+.+++ .++
T Consensus 475 ~~-~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N 552 (636)
T 4eco_A 475 NS-LKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGN 552 (636)
T ss_dssp SS-SEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCC
T ss_pred HH-hccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccC
Confidence 32 22 23389999999999999998887 99999999999999887 8887777777777666 456
Q ss_pred cccCCCCchhh---hhhhcccCCCCCCCCCccchhcccccceeeecccc
Q 044579 868 QFLPEIPSCLE---ELDASMLEKPPKTSHVDEFWTEEMLSIKFKFTNCL 913 (1103)
Q Consensus 868 ~~~~~~p~~l~---~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~ 913 (1103)
.+.+.+|..+. +|..+.+++|.. ..++.... ..+..+++++|.
T Consensus 553 ~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~ 598 (636)
T 4eco_A 553 RTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNP 598 (636)
T ss_dssp BCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCT
T ss_pred cccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCC
Confidence 67778887654 456667888877 44444332 234567777763
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=5.5e-29 Score=306.79 Aligned_cols=359 Identities=20% Similarity=0.157 Sum_probs=237.2
Q ss_pred ccccCCCCcceeechHhhhcCcccceEEEecCCCCCccccCcceecCCCcccCCCceEEEEEcCCCCCCCC-Ccc-cccc
Q 044579 520 IFLDLSKTKDIHLSSQAFANMSNLRLLKFYMPERGGVPIMSSKVHLDQGLEDLPEKLRYLHWHGYPLKTLP-FDF-ELEN 597 (1103)
Q Consensus 520 i~L~l~~~~~~~~~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp-~~~-~l~~ 597 (1103)
..||++++....+.+.+|.++++|++|++++|.+. ...|..+..++ +|++|++++|.+..++ ..+ .+++
T Consensus 36 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~--------~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~ 106 (606)
T 3t6q_A 36 ECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY--------WIHEDTFQSQH-RLDTLVLTANPLIFMAETALSGPKA 106 (606)
T ss_dssp CEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCC--------EECTTTTTTCT-TCCEEECTTCCCSEECTTTTSSCTT
T ss_pred cEEEccCCccCcCChhHhccCccceEEECCCCccc--------eeChhhccCcc-ccCeeeCCCCcccccChhhhccccc
Confidence 46889999999999999999999999999998653 23355677776 8999999999998774 455 8999
Q ss_pred cccccccccccccc-ccccccCCcceEecCCCCCCCc-cCCCCCCCCCccEEEecCCCCCCcccccccCCCccc--EEEc
Q 044579 598 LIELRLPYSKVEQI-WEGKKEASKLKSIDLCHSQHLI-RMPDLSEIPNLERTNFFNCTNLVLVPSSIQNFNNLS--MLCF 673 (1103)
Q Consensus 598 L~~L~L~~n~i~~l-~~~~~~l~~L~~L~L~~~~~~~-~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~--~L~L 673 (1103)
|++|+|++|.++.+ +..+.++++|++|+|++|.+.. ..|.+..+++|++|++++|......|..++.+++|+ .|++
T Consensus 107 L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l 186 (606)
T 3t6q_A 107 LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNL 186 (606)
T ss_dssp CCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEEC
T ss_pred ccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEec
Confidence 99999999999988 5778999999999999999766 447777799999999999877666677889999999 8999
Q ss_pred cCCCCCcccCCCCCCCCCcEEEccCCcC---------------------------------------------------C
Q 044579 674 RGCESLRSFPRDIHFVSPVTIDFSFCVN---------------------------------------------------L 702 (1103)
Q Consensus 674 ~~~~~l~~lp~~~~l~~L~~L~l~~c~~---------------------------------------------------l 702 (1103)
++|......|..+...+|+.|++++|.. +
T Consensus 187 ~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l 266 (606)
T 3t6q_A 187 NGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266 (606)
T ss_dssp TTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCC
T ss_pred CCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCcc
Confidence 9987666555555666666666665531 1
Q ss_pred CcCCC----cCCCccEEecCCccceecCccccCCCCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccccCCc
Q 044579 703 TEFPK----ISGKITELNLCDTAIEEVPSSVECLTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELPS 778 (1103)
Q Consensus 703 ~~~~~----~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~ 778 (1103)
..++. .+.+|++|++++|.++.+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|..... +|.
T Consensus 267 ~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~---~~~ 343 (606)
T 3t6q_A 267 FNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE---LGT 343 (606)
T ss_dssp SSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCB---CCS
T ss_pred CccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccc---cch
Confidence 11221 12345566666666666666666666666666666655555555556666666666665543222 222
Q ss_pred -cccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCcccc-CccccCCCCCCEEeccCCcCCcccCcc-ccc
Q 044579 779 -SFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESL-PSSIKQLSQLRKLDLSNCNMLLSLPEL-PLF 855 (1103)
Q Consensus 779 -~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~n~~l~~lp~~-~~~ 855 (1103)
.+..+++|++|++++|.+....+.+..+..+++|++|++++|.++.+ |..+..+++|+.|+|++|++.+..|.. +..
T Consensus 344 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 423 (606)
T 3t6q_A 344 GCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQN 423 (606)
T ss_dssp STTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTT
T ss_pred hhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhC
Confidence 25556666666666655443221122345566666666666666543 445556666666666666655544432 444
Q ss_pred cccceecccccccccCCCCch---hhhhhhcccCCCCC
Q 044579 856 LEDLEARNCKRLQFLPEIPSC---LEELDASMLEKPPK 890 (1103)
Q Consensus 856 L~~L~~~~c~~l~~~~~~p~~---l~~L~~~~~~~~~~ 890 (1103)
++.|..+++.++.+.+..|.. +.+|..+.+++|..
T Consensus 424 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 461 (606)
T 3t6q_A 424 LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF 461 (606)
T ss_dssp CTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBC
T ss_pred cccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCC
Confidence 555555555555544443332 33344444555443
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=1.1e-28 Score=308.61 Aligned_cols=359 Identities=17% Similarity=0.160 Sum_probs=279.8
Q ss_pred ccccCCCCcceeechHhhhcCcccceEEEecCCCCCccccCcce---------ecCCCcc--cCCCceEEEEEcCCC-CC
Q 044579 520 IFLDLSKTKDIHLSSQAFANMSNLRLLKFYMPERGGVPIMSSKV---------HLDQGLE--DLPEKLRYLHWHGYP-LK 587 (1103)
Q Consensus 520 i~L~l~~~~~~~~~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~---------~l~~~l~--~l~~~Lr~L~l~~~~-l~ 587 (1103)
+.+....+....+ |..|.++++|+.|++++|.+.+........ .+|..+. .++ +|++|++++|. ..
T Consensus 428 l~l~~~~N~L~~I-P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~-~L~~L~Ls~N~l~~ 505 (876)
T 4ecn_A 428 TQIGNLTNRITFI-SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLK-DLTDVELYNCPNMT 505 (876)
T ss_dssp TTTTCCSCEEEEE-CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCT-TCCEEEEESCTTCC
T ss_pred ceeccccCcccch-hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCC-CCCEEECcCCCCCc
Confidence 3344444556665 457999999999999999875411000001 2677766 776 89999999998 45
Q ss_pred CCCCcc-cccccccccccccc-ccc--cccccccCC-------cceEecCCCCCCCccCCC---CCCCCCccEEEecCCC
Q 044579 588 TLPFDF-ELENLIELRLPYSK-VEQ--IWEGKKEAS-------KLKSIDLCHSQHLIRMPD---LSEIPNLERTNFFNCT 653 (1103)
Q Consensus 588 ~lp~~~-~l~~L~~L~L~~n~-i~~--l~~~~~~l~-------~L~~L~L~~~~~~~~~p~---l~~l~~L~~L~L~~~~ 653 (1103)
.+|..+ .+++|++|+|++|+ ++. +|..+..++ +|++|+|++|.+. .+|. ++++++|+.|+|++|.
T Consensus 506 ~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~ 584 (876)
T 4ecn_A 506 QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNK 584 (876)
T ss_dssp SCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSC
T ss_pred cChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCC
Confidence 788777 89999999999998 874 887666665 9999999999977 7776 8999999999999987
Q ss_pred CCCcccccccCCCcccEEEccCCCCCcccCCCC-CCCC-CcEEEccCCcCCCcCCCcCC-----CccEEecCCccceecC
Q 044579 654 NLVLVPSSIQNFNNLSMLCFRGCESLRSFPRDI-HFVS-PVTIDFSFCVNLTEFPKISG-----KITELNLCDTAIEEVP 726 (1103)
Q Consensus 654 ~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~-~l~~-L~~L~l~~c~~l~~~~~~~~-----~L~~L~L~~~~i~~lp 726 (1103)
.. .+| .++.+++|+.|+|++|... .+|..+ .+++ |+.|++++|. +..+|..+. +|+.|+|++|.+...+
T Consensus 585 l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~i 660 (876)
T 4ecn_A 585 VR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKIGSEG 660 (876)
T ss_dssp CC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSSCTTTTS
T ss_pred cc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCC-CCcCchhhhccccCCCCEEECcCCcCCCcc
Confidence 55 888 8999999999999997644 888777 7788 9999999976 557886543 3889999999986443
Q ss_pred ----cccc--CCCCCCEEecCCCcccccccccc-cCCCCCcEEeecCCCCCCccccCCccccC--------CCCCCeeec
Q 044579 727 ----SSVE--CLTNLKELYLSRCSTLNRLSTSI-CKLKSLHELILSDCLSLETITELPSSFAN--------LEGLEKLVL 791 (1103)
Q Consensus 727 ----~~~~--~l~~L~~L~L~~~~~~~~lp~~l-~~l~~L~~L~L~~~~~l~~i~~lp~~~~~--------l~~L~~L~L 791 (1103)
..+. .+++|+.|+|++|.+. .+|..+ ..+++|+.|+|++|... .+|..+.. +++|+.|+|
T Consensus 661 p~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~----~ip~~~~~~~~~~l~nl~~L~~L~L 735 (876)
T 4ecn_A 661 RNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT----SIPENSLKPKDGNYKNTYLLTTIDL 735 (876)
T ss_dssp SSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS----CCCTTSSSCTTSCCTTGGGCCEEEC
T ss_pred ccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC----ccChHHhccccccccccCCccEEEC
Confidence 2333 4458999999999877 566654 48999999999997533 46665433 349999999
Q ss_pred cCCCCCCCCCCCcccCCCCCCCEEeCCCCCccccCccccCCCCCCEEeccC------CcCCcccCccccccccceecccc
Q 044579 792 VGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESLPSSIKQLSQLRKLDLSN------CNMLLSLPELPLFLEDLEARNCK 865 (1103)
Q Consensus 792 ~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~------n~~l~~lp~~~~~L~~L~~~~c~ 865 (1103)
++|.+. .+|.......+++|+.|+|++|.++.+|..+..+++|+.|+|++ |.+.+.+|..+..+..|..++++
T Consensus 736 s~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls 814 (876)
T 4ecn_A 736 RFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIG 814 (876)
T ss_dssp CSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECC
T ss_pred CCCCCc-cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECC
Confidence 999866 67533221379999999999999999999999999999999976 77888999888888888888888
Q ss_pred cccccCCCCchh-hhhhhcccCCCCCCC
Q 044579 866 RLQFLPEIPSCL-EELDASMLEKPPKTS 892 (1103)
Q Consensus 866 ~l~~~~~~p~~l-~~L~~~~~~~~~~~~ 892 (1103)
+|++ +.+|..+ .+|..+.+++|+...
T Consensus 815 ~N~L-~~Ip~~l~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 815 SNDI-RKVDEKLTPQLYILDIADNPNIS 841 (876)
T ss_dssp SSCC-CBCCSCCCSSSCEEECCSCTTCE
T ss_pred CCCC-CccCHhhcCCCCEEECCCCCCCc
Confidence 8887 6677642 456667778887654
No 12
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=1.8e-28 Score=302.18 Aligned_cols=221 Identities=20% Similarity=0.159 Sum_probs=148.0
Q ss_pred cCCCcccEEEccCCCCCcccCCCCCCCCCcEEEccCCcCCCcCC-CcCCCccEEecCCccceec---CccccCCCCCCEE
Q 044579 663 QNFNNLSMLCFRGCESLRSFPRDIHFVSPVTIDFSFCVNLTEFP-KISGKITELNLCDTAIEEV---PSSVECLTNLKEL 738 (1103)
Q Consensus 663 ~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~~-~~~~~L~~L~L~~~~i~~l---p~~~~~l~~L~~L 738 (1103)
..+++|+.|++++|.. +.+|.. .+++|+.|++++|..+..++ ....+|++|++++|.+..+ |..+..+++|+.|
T Consensus 304 ~~~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L 381 (606)
T 3vq2_A 304 PKHFKWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHL 381 (606)
T ss_dssp CTTCCCSEEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEE
T ss_pred cccccCCEEEcccccC-cccccC-CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEe
Confidence 3334444555555433 444432 55555555555554333322 1345677888888877765 6677778888888
Q ss_pred ecCCCcccccccccccCCCCCcEEeecCCCCCCccccCC-ccccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCEEeC
Q 044579 739 YLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELP-SSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDL 817 (1103)
Q Consensus 739 ~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp-~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~L 817 (1103)
++++|.+. .+|..+..+++|+.|++++|..... .| ..+..+++|+.|++++|.+.... +..+..+++|++|+|
T Consensus 382 ~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l 455 (606)
T 3vq2_A 382 DLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRV---TEFSAFLSLEKLLYLDISYTNTKIDF--DGIFLGLTSLNTLKM 455 (606)
T ss_dssp ECCSCSEE-EECCCCTTCTTCCEEECTTSEEEST---TTTTTTTTCTTCCEEECTTSCCEECC--TTTTTTCTTCCEEEC
T ss_pred ECCCCccc-cchhhccCCCCCCeeECCCCccCCc---cChhhhhccccCCEEECcCCCCCccc--hhhhcCCCCCCEEEC
Confidence 88887644 3566777888888888888643322 33 46777888888888888766655 344667788888888
Q ss_pred CCCCccc--cCccccCCCCCCEEeccCCcCCcccCccccccccceecccccccccCCCCchh---hhhhhcccCCCCCC
Q 044579 818 SGNNFES--LPSSIKQLSQLRKLDLSNCNMLLSLPELPLFLEDLEARNCKRLQFLPEIPSCL---EELDASMLEKPPKT 891 (1103)
Q Consensus 818 s~n~l~~--lp~~i~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~~~~c~~l~~~~~~p~~l---~~L~~~~~~~~~~~ 891 (1103)
++|.++. +|..+..+++|+.|+|++|++.+..|..+..++.|+.+++++|++.+..|..+ .+|..+.+++|...
T Consensus 456 ~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 456 AGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred CCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence 8888874 67778888888888888888877777777777777777777777766655543 34556667777654
No 13
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=3.6e-28 Score=299.49 Aligned_cols=377 Identities=18% Similarity=0.152 Sum_probs=229.1
Q ss_pred ccCCCCcceeechHhhhcCcccceEEEecCCCCCccccCcceecCCCcccCCCceEEEEEcCCCCCCC--CCcccccccc
Q 044579 522 LDLSKTKDIHLSSQAFANMSNLRLLKFYMPERGGVPIMSSKVHLDQGLEDLPEKLRYLHWHGYPLKTL--PFDFELENLI 599 (1103)
Q Consensus 522 L~l~~~~~~~~~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~l--p~~~~l~~L~ 599 (1103)
|+++++....+.+.+|.++++|++|++++|.+.+.. +..+..++ +|++|++++|.+..+ |..+.+++|+
T Consensus 86 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~--------~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~ 156 (606)
T 3t6q_A 86 LVLTANPLIFMAETALSGPKALKHLFFIQTGISSID--------FIPLHNQK-TLESLYLGSNHISSIKLPKGFPTEKLK 156 (606)
T ss_dssp EECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGG--------GSCCTTCT-TCCEEECCSSCCCCCCCCTTCCCTTCC
T ss_pred eeCCCCcccccChhhhcccccccEeeccccCcccCC--------cchhccCC-cccEEECCCCcccccCcccccCCcccC
Confidence 444555444555555555555555555555443210 12233333 677777777777665 4444666777
Q ss_pred ccccccccccccc-cccccCCcce--EecCCCCCC---------------------------------------------
Q 044579 600 ELRLPYSKVEQIW-EGKKEASKLK--SIDLCHSQH--------------------------------------------- 631 (1103)
Q Consensus 600 ~L~L~~n~i~~l~-~~~~~l~~L~--~L~L~~~~~--------------------------------------------- 631 (1103)
+|+|++|.++.++ ..+..+++|+ .|++++|.+
T Consensus 157 ~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~ 236 (606)
T 3t6q_A 157 VLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFE 236 (606)
T ss_dssp EEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCT
T ss_pred EEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhc
Confidence 7777777666553 3344444444 444444433
Q ss_pred ------------------------------CccCCC-CCCCCCccEEEecCCCCCCcccccccCCCcccEEEccCCCCCc
Q 044579 632 ------------------------------LIRMPD-LSEIPNLERTNFFNCTNLVLVPSSIQNFNNLSMLCFRGCESLR 680 (1103)
Q Consensus 632 ------------------------------~~~~p~-l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~~~~l~ 680 (1103)
....+. |..+++|++|++++|. +..+|..+..+++|++|++++|....
T Consensus 237 ~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~l~~ 315 (606)
T 3t6q_A 237 DMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFEN 315 (606)
T ss_dssp TSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTTCCCSB
T ss_pred cccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCc-cCCCChhhcccccCCEEECccCCcCc
Confidence 222222 5667777777777763 45677777777888888887765444
Q ss_pred ccCCCC-CCCCCcEEEccCCcCCCcCCC----cCCCccEEecCCccceec---CccccCCCCCCEEecCCCccccccccc
Q 044579 681 SFPRDI-HFVSPVTIDFSFCVNLTEFPK----ISGKITELNLCDTAIEEV---PSSVECLTNLKELYLSRCSTLNRLSTS 752 (1103)
Q Consensus 681 ~lp~~~-~l~~L~~L~l~~c~~l~~~~~----~~~~L~~L~L~~~~i~~l---p~~~~~l~~L~~L~L~~~~~~~~lp~~ 752 (1103)
..|..+ .+++|++|++++|.....+|. ...+|++|++++|.+..+ |..+..+++|+.|++++|.+.+..|..
T Consensus 316 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 395 (606)
T 3t6q_A 316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA 395 (606)
T ss_dssp GGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTT
T ss_pred CchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHH
Confidence 444444 677777888777755544443 345677888888887765 556778888888888888777777777
Q ss_pred ccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCccc--cC--cc
Q 044579 753 ICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFES--LP--SS 828 (1103)
Q Consensus 753 l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~--lp--~~ 828 (1103)
+..+++|++|++++|..... ..+..+..+++|+.|++++|.+.... +..+..+++|++|+|++|.++. +| ..
T Consensus 396 ~~~l~~L~~L~l~~n~l~~~--~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 471 (606)
T 3t6q_A 396 FKECPQLELLDLAFTRLKVK--DAQSPFQNLHLLKVLNLSHSLLDISS--EQLFDGLPALQHLNLQGNHFPKGNIQKTNS 471 (606)
T ss_dssp TTTCTTCSEEECTTCCEECC--TTCCTTTTCTTCCEEECTTCCCBTTC--TTTTTTCTTCCEEECTTCBCGGGEECSSCG
T ss_pred hcCCccCCeEECCCCcCCCc--ccchhhhCcccCCEEECCCCccCCcC--HHHHhCCCCCCEEECCCCCCCccccccchh
Confidence 78888888888887653322 01233667777777777777765544 3345667777777777777763 22 45
Q ss_pred ccCCCCCCEEeccCCcCCcccCccccccccceecccccccccCCCCchhhhhh--hcccCCCCCCCCCccchhcccccce
Q 044579 829 IKQLSQLRKLDLSNCNMLLSLPELPLFLEDLEARNCKRLQFLPEIPSCLEELD--ASMLEKPPKTSHVDEFWTEEMLSIK 906 (1103)
Q Consensus 829 i~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~~~~c~~l~~~~~~p~~l~~L~--~~~~~~~~~~~~~~~~~~~~~~~~~ 906 (1103)
+..+++|+.|+|++|++.+..|..+..++.|..+++++|++.+..|..+..+. .+.+++|......+...........
T Consensus 472 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~L~L~~N~l~~~~~~~~~~l~~L~~ 551 (606)
T 3t6q_A 472 LQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRT 551 (606)
T ss_dssp GGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSCEEECCSSCCCCCCGGGHHHHHTSSE
T ss_pred hccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCcccccEEECcCCcccccCHhhcccCCCCCE
Confidence 67777777777777777766666666667777777777776665555444433 3445555555443333222222344
Q ss_pred eeeccc
Q 044579 907 FKFTNC 912 (1103)
Q Consensus 907 ~~~~~C 912 (1103)
+.+.+|
T Consensus 552 L~l~~N 557 (606)
T 3t6q_A 552 INLRQN 557 (606)
T ss_dssp EECTTC
T ss_pred EeCCCC
Confidence 555543
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=8.4e-29 Score=305.08 Aligned_cols=360 Identities=15% Similarity=0.153 Sum_probs=286.1
Q ss_pred ccccCCCCcceeechHhhhcCcccceEEEecCCCCCccccCc---------ceecCCCcc--cCCCceEEEEEcCCCCC-
Q 044579 520 IFLDLSKTKDIHLSSQAFANMSNLRLLKFYMPERGGVPIMSS---------KVHLDQGLE--DLPEKLRYLHWHGYPLK- 587 (1103)
Q Consensus 520 i~L~l~~~~~~~~~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~---------~~~l~~~l~--~l~~~Lr~L~l~~~~l~- 587 (1103)
+.+....+....+ +..|.++++|++|++++|.+.+...... ...+|..+. .++ +|++|++++|.+.
T Consensus 186 l~l~~~~n~l~~i-p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~-~L~~L~L~~n~l~~ 263 (636)
T 4eco_A 186 TQIGQLSNNITFV-SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLK-DLTDVEVYNCPNLT 263 (636)
T ss_dssp TTTTCCSCEEEEE-CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCT-TCCEEEEECCTTCS
T ss_pred hhhccccCCCccC-CHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccC-CCCEEEecCCcCCc
Confidence 3444444556664 5579999999999999998754100000 001777777 777 8999999999855
Q ss_pred CCCCcc-cccccccccccccc-cc--ccccccccC------CcceEecCCCCCCCccCCC---CCCCCCccEEEecCCCC
Q 044579 588 TLPFDF-ELENLIELRLPYSK-VE--QIWEGKKEA------SKLKSIDLCHSQHLIRMPD---LSEIPNLERTNFFNCTN 654 (1103)
Q Consensus 588 ~lp~~~-~l~~L~~L~L~~n~-i~--~l~~~~~~l------~~L~~L~L~~~~~~~~~p~---l~~l~~L~~L~L~~~~~ 654 (1103)
.+|..+ .+++|++|+|++|+ ++ .+|..+..+ ++|++|+|++|.+. .+|. ++.+++|++|++++|..
T Consensus 264 ~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l 342 (636)
T 4eco_A 264 KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQL 342 (636)
T ss_dssp SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCC
T ss_pred cChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcC
Confidence 678777 79999999999998 87 488888776 99999999999977 7776 89999999999999877
Q ss_pred CCcccccccCCCcccEEEccCCCCCcccCCCC-CCCC-CcEEEccCCcCCCcCCCcCC-----CccEEecCCcccee-cC
Q 044579 655 LVLVPSSIQNFNNLSMLCFRGCESLRSFPRDI-HFVS-PVTIDFSFCVNLTEFPKISG-----KITELNLCDTAIEE-VP 726 (1103)
Q Consensus 655 l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~-~l~~-L~~L~l~~c~~l~~~~~~~~-----~L~~L~L~~~~i~~-lp 726 (1103)
.+.+| .++.+++|+.|++++|. +..+|..+ .+++ |+.|++++|. +..+|..+. +|+.|++++|.+.. +|
T Consensus 343 ~g~ip-~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p 419 (636)
T 4eco_A 343 EGKLP-AFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDG 419 (636)
T ss_dssp EEECC-CCEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSSCTTTTTT
T ss_pred ccchh-hhCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCCcCCCcch
Confidence 66888 89999999999999975 55888877 7888 9999999976 457886543 68899999999984 56
Q ss_pred cccc-------CCCCCCEEecCCCccccccccc-ccCCCCCcEEeecCCCCCCccccCCccccC--------CCCCCeee
Q 044579 727 SSVE-------CLTNLKELYLSRCSTLNRLSTS-ICKLKSLHELILSDCLSLETITELPSSFAN--------LEGLEKLV 790 (1103)
Q Consensus 727 ~~~~-------~l~~L~~L~L~~~~~~~~lp~~-l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~--------l~~L~~L~ 790 (1103)
..+. .+++|+.|+|++|.+. .+|.. +..+++|++|+|++|... .+|..... +++|+.|+
T Consensus 420 ~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~----~i~~~~~~~~~~~~~~l~~L~~L~ 494 (636)
T 4eco_A 420 KNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT----EIPKNSLKDENENFKNTYLLTSID 494 (636)
T ss_dssp CSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS----BCCSSSSEETTEECTTGGGCCEEE
T ss_pred hhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC----CcCHHHhccccccccccCCccEEE
Confidence 7777 7889999999999877 55554 556999999999997644 35654332 33999999
Q ss_pred ccCCCCCCCCCCCcccCCCCCCCEEeCCCCCccccCccccCCCCCCEEec------cCCcCCcccCccccccccceeccc
Q 044579 791 LVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESLPSSIKQLSQLRKLDL------SNCNMLLSLPELPLFLEDLEARNC 864 (1103)
Q Consensus 791 L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L------~~n~~l~~lp~~~~~L~~L~~~~c 864 (1103)
|++|.+. .+|.......+++|+.|+|++|.++.+|..+..+++|+.|+| ++|++.+.+|..+..+..|+.+++
T Consensus 495 Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~L 573 (636)
T 4eco_A 495 LRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQI 573 (636)
T ss_dssp CCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEEC
T ss_pred CcCCcCC-ccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEEC
Confidence 9999876 675332223899999999999999999999999999999999 567788899998888888888888
Q ss_pred ccccccCCCCch-hhhhhhcccCCCCCCC
Q 044579 865 KRLQFLPEIPSC-LEELDASMLEKPPKTS 892 (1103)
Q Consensus 865 ~~l~~~~~~p~~-l~~L~~~~~~~~~~~~ 892 (1103)
++|++ +.+|.. ..+|..+.+++|+...
T Consensus 574 s~N~l-~~ip~~~~~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 574 GSNDI-RKVNEKITPNISVLDIKDNPNIS 601 (636)
T ss_dssp CSSCC-CBCCSCCCTTCCEEECCSCTTCE
T ss_pred CCCcC-CccCHhHhCcCCEEECcCCCCcc
Confidence 88887 666653 2567777788887654
No 15
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=3.2e-28 Score=299.95 Aligned_cols=250 Identities=18% Similarity=0.164 Sum_probs=201.5
Q ss_pred CCCCCCccEEEecCCCCCCcccccccCCCcccEEEccCCCCCcccCCCCCCCCCcEEEccCCcCCCc--CCC---cCCCc
Q 044579 638 LSEIPNLERTNFFNCTNLVLVPSSIQNFNNLSMLCFRGCESLRSFPRDIHFVSPVTIDFSFCVNLTE--FPK---ISGKI 712 (1103)
Q Consensus 638 l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~--~~~---~~~~L 712 (1103)
+..+++|++|++++|.. ..+| .+ .+++|+.|++++|..+..+ ....+++|+.|++++|..... .|. ...+|
T Consensus 303 l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L 378 (606)
T 3vq2_A 303 VPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSL 378 (606)
T ss_dssp CCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCC
T ss_pred ccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch-hhccCCCCCEEECcCCccCCCcchhhhhccCCcc
Confidence 34445677777777665 6777 45 9999999999999777766 334899999999999753222 132 45689
Q ss_pred cEEecCCccceecCccccCCCCCCEEecCCCccccccc-ccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeec
Q 044579 713 TELNLCDTAIEEVPSSVECLTNLKELYLSRCSTLNRLS-TSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVL 791 (1103)
Q Consensus 713 ~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp-~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L 791 (1103)
++|++++|.+..+|..+..+++|+.|++++|.+.+..| ..+..+++|++|++++|..... .|..+.++++|++|++
T Consensus 379 ~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l 455 (606)
T 3vq2_A 379 RHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID---FDGIFLGLTSLNTLKM 455 (606)
T ss_dssp CEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEEC---CTTTTTTCTTCCEEEC
T ss_pred cEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCcc---chhhhcCCCCCCEEEC
Confidence 99999999999999999999999999999999888877 6799999999999999875443 6788999999999999
Q ss_pred cCCCCCCCCCCCcccCCCCCCCEEeCCCCCcccc-CccccCCCCCCEEeccCCcCCcccCccccccccceeccccccccc
Q 044579 792 VGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESL-PSSIKQLSQLRKLDLSNCNMLLSLPELPLFLEDLEARNCKRLQFL 870 (1103)
Q Consensus 792 ~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~~~~c~~l~~~ 870 (1103)
++|.+.+..+ +..+..+++|+.|+|++|.++.+ |..+..+++|+.|+|++|++.+..|..+..+..|..+++++|++.
T Consensus 456 ~~n~l~~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 456 AGNSFKDNTL-SNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp TTCEEGGGEE-CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred CCCcCCCcch-HHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence 9998776422 44578899999999999999966 567899999999999999999988998888888888888888866
Q ss_pred CCCCchhhh----hhhcccCCCCCCCCCcc
Q 044579 871 PEIPSCLEE----LDASMLEKPPKTSHVDE 896 (1103)
Q Consensus 871 ~~~p~~l~~----L~~~~~~~~~~~~~~~~ 896 (1103)
.+|..+.. |..+.+.+|+.....+.
T Consensus 535 -~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 535 -TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp -CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred -ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 56654433 55566777776554443
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=1.7e-28 Score=306.98 Aligned_cols=382 Identities=15% Similarity=0.141 Sum_probs=297.8
Q ss_pred ccccCCCCcceeechHhhhcCcccceEEE-ecCCCCCccc----------------------------------------
Q 044579 520 IFLDLSKTKDIHLSSQAFANMSNLRLLKF-YMPERGGVPI---------------------------------------- 558 (1103)
Q Consensus 520 i~L~l~~~~~~~~~~~~f~~l~~Lr~L~l-~~n~~~~~~~---------------------------------------- 558 (1103)
..|+++++......+..|.++++|++|+| ++|.+.+...
T Consensus 326 ~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~ 405 (876)
T 4ecn_A 326 TGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQ 405 (876)
T ss_dssp EEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHH
T ss_pred EEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHH
Confidence 45677887777666789999999999999 7764321100
Q ss_pred ----------------------------cCcceecCCCcccCCCceEEEEEcCCCCCC------------------CCCc
Q 044579 559 ----------------------------MSSKVHLDQGLEDLPEKLRYLHWHGYPLKT------------------LPFD 592 (1103)
Q Consensus 559 ----------------------------~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~------------------lp~~ 592 (1103)
......+|..+..++ +|++|++++|.++. +|..
T Consensus 406 ~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~-~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~ 484 (876)
T 4ecn_A 406 DAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLT-KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEE 484 (876)
T ss_dssp HHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCT-TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC
T ss_pred HHhhhCccccccccccccchhhceeccccCcccchhHHHhcCC-CCCEEECcCCcCCCCcccccccccccccccccCChh
Confidence 001112677777777 89999999999998 9988
Q ss_pred c---cccccccccccccccc-ccccccccCCcceEecCCCCC-CCc-cCCC--------CCCCCCccEEEecCCCCCCcc
Q 044579 593 F---ELENLIELRLPYSKVE-QIWEGKKEASKLKSIDLCHSQ-HLI-RMPD--------LSEIPNLERTNFFNCTNLVLV 658 (1103)
Q Consensus 593 ~---~l~~L~~L~L~~n~i~-~l~~~~~~l~~L~~L~L~~~~-~~~-~~p~--------l~~l~~L~~L~L~~~~~l~~~ 658 (1103)
+ .+++|++|+|++|++. .+|..+.++++|+.|+|++|+ +.. .+|. +..+++|++|+|++|... .+
T Consensus 485 l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~i 563 (876)
T 4ecn_A 485 LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EF 563 (876)
T ss_dssp CCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BC
T ss_pred hhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-cc
Confidence 6 6999999999999854 789999999999999999998 554 4553 345669999999998765 89
Q ss_pred cc--cccCCCcccEEEccCCCCCcccCCCCCCCCCcEEEccCCcCCCcCCCcC---CC-ccEEecCCccceecCccccCC
Q 044579 659 PS--SIQNFNNLSMLCFRGCESLRSFPRDIHFVSPVTIDFSFCVNLTEFPKIS---GK-ITELNLCDTAIEEVPSSVECL 732 (1103)
Q Consensus 659 ~~--~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~~~~~---~~-L~~L~L~~~~i~~lp~~~~~l 732 (1103)
|. .++++++|+.|+|++|... .+|....+++|+.|++++|... .+|..+ .+ |+.|+|++|.+..+|..+..+
T Consensus 564 p~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~ 641 (876)
T 4ecn_A 564 PASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAK 641 (876)
T ss_dssp CCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTT
T ss_pred CChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhcc
Confidence 98 9999999999999997644 8993338899999999997644 777544 45 999999999999999988877
Q ss_pred CC--CCEEecCCCccccccccc---cc--CCCCCcEEeecCCCCCCccccCCcccc-CCCCCCeeeccCCCCCCCCCCCc
Q 044579 733 TN--LKELYLSRCSTLNRLSTS---IC--KLKSLHELILSDCLSLETITELPSSFA-NLEGLEKLVLVGCSKLNKLPHSI 804 (1103)
Q Consensus 733 ~~--L~~L~L~~~~~~~~lp~~---l~--~l~~L~~L~L~~~~~l~~i~~lp~~~~-~l~~L~~L~L~~~~~~~~lp~~~ 804 (1103)
+. |+.|+|++|.+.+.+|.. +. .+++|+.|+|++|... .+|..+. .+++|+.|+|++|.+. .+|...
T Consensus 642 ~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~----~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~ 716 (876)
T 4ecn_A 642 SVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ----KFPTELFATGSPISTIILSNNLMT-SIPENS 716 (876)
T ss_dssp CSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC----SCCHHHHHTTCCCSEEECCSCCCS-CCCTTS
T ss_pred ccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC----ccCHHHHccCCCCCEEECCCCcCC-ccChHH
Confidence 65 999999999988876632 23 3458999999997543 4777664 8999999999999866 675432
Q ss_pred c------cCCCCCCCEEeCCCCCccccCcccc--CCCCCCEEeccCCcCCcccCccccccccceeccccc------cccc
Q 044579 805 D------FCCLSSLQWLDLSGNNFESLPSSIK--QLSQLRKLDLSNCNMLLSLPELPLFLEDLEARNCKR------LQFL 870 (1103)
Q Consensus 805 ~------~~~l~~L~~L~Ls~n~l~~lp~~i~--~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~~~~c~~------l~~~ 870 (1103)
. ..++++|+.|+|++|+++.+|..+. .+++|+.|+|++|++.+ +|..+..++.|..+++++ +.+.
T Consensus 717 ~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~ 795 (876)
T 4ecn_A 717 LKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRIL 795 (876)
T ss_dssp SSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCC
T ss_pred hccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCccccccc
Confidence 1 1133499999999999999999987 99999999999999877 787777777777776654 6677
Q ss_pred CCCCchhh---hhhhcccCCCCCCCCCccchhcccccceeeeccccc
Q 044579 871 PEIPSCLE---ELDASMLEKPPKTSHVDEFWTEEMLSIKFKFTNCLK 914 (1103)
Q Consensus 871 ~~~p~~l~---~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~ 914 (1103)
+.+|..+. +|..+.+++|.. ..++....+ .+..+++++|.-
T Consensus 796 ~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~--~L~~LdLs~N~l 839 (876)
T 4ecn_A 796 RQWPTGITTCPSLIQLQIGSNDI-RKVDEKLTP--QLYILDIADNPN 839 (876)
T ss_dssp CCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCS--SSCEEECCSCTT
T ss_pred ccChHHHhcCCCCCEEECCCCCC-CccCHhhcC--CCCEEECCCCCC
Confidence 88887654 456677888887 445544332 446778888753
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=6.3e-28 Score=291.48 Aligned_cols=353 Identities=17% Similarity=0.159 Sum_probs=249.8
Q ss_pred cccCCCCcceeechHhhhcCcccceEEEecCCCCCccccCcceecCCCcccCCCceEEEEEcCCCCCCCCCccccccccc
Q 044579 521 FLDLSKTKDIHLSSQAFANMSNLRLLKFYMPERGGVPIMSSKVHLDQGLEDLPEKLRYLHWHGYPLKTLPFDFELENLIE 600 (1103)
Q Consensus 521 ~L~l~~~~~~~~~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~ 600 (1103)
.|+++++....+.+.+|.++++|++|++++|.+.+ ..|..+..++ +|++|++++|.++.+|.. .+++|++
T Consensus 25 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~--------~~~~~~~~l~-~L~~L~Ls~N~l~~lp~~-~l~~L~~ 94 (520)
T 2z7x_B 25 ILNISQNYISELWTSDILSLSKLRILIISHNRIQY--------LDISVFKFNQ-ELEYLDLSHNKLVKISCH-PTVNLKH 94 (520)
T ss_dssp EEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCE--------EEGGGGTTCT-TCCEEECCSSCCCEEECC-CCCCCSE
T ss_pred EEECCCCcccccChhhccccccccEEecCCCccCC--------cChHHhhccc-CCCEEecCCCceeecCcc-ccCCccE
Confidence 57888888888888999999999999999986632 2345666666 899999999999999988 8999999
Q ss_pred cccccccccc--cccccccCCcceEecCCCCCCCccCCCCCCCCCc--cEEEecCCCC--CCcccccccC----------
Q 044579 601 LRLPYSKVEQ--IWEGKKEASKLKSIDLCHSQHLIRMPDLSEIPNL--ERTNFFNCTN--LVLVPSSIQN---------- 664 (1103)
Q Consensus 601 L~L~~n~i~~--l~~~~~~l~~L~~L~L~~~~~~~~~p~l~~l~~L--~~L~L~~~~~--l~~~~~~i~~---------- 664 (1103)
|+|++|.++. +|..++.+++|++|+|++|.+.. ..+..+++| ++|++++|.. ....|..+..
T Consensus 95 L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l 172 (520)
T 2z7x_B 95 LDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF 172 (520)
T ss_dssp EECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEEC
T ss_pred EeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEe
Confidence 9999999986 56889999999999999998654 346677777 8899888876 4444544443
Q ss_pred ----------------CCcccEEEccCCC-------CCcccC------C---------------------CCCCCCCcEE
Q 044579 665 ----------------FNNLSMLCFRGCE-------SLRSFP------R---------------------DIHFVSPVTI 694 (1103)
Q Consensus 665 ----------------l~~L~~L~L~~~~-------~l~~lp------~---------------------~~~l~~L~~L 694 (1103)
+++|+.|++++|. ..+.+| . ....++|+.|
T Consensus 173 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L 252 (520)
T 2z7x_B 173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF 252 (520)
T ss_dssp CSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEE
T ss_pred ccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEE
Confidence 4445555554442 000000 0 0012245555
Q ss_pred EccCCcCCCcCCCcC----------------------------------CCccEEecCCccceecCccccCCCCCCEEec
Q 044579 695 DFSFCVNLTEFPKIS----------------------------------GKITELNLCDTAIEEVPSSVECLTNLKELYL 740 (1103)
Q Consensus 695 ~l~~c~~l~~~~~~~----------------------------------~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L 740 (1103)
++++|.....+|... .+|+.|++++|.+..++. ...+++|++|++
T Consensus 253 ~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L 331 (520)
T 2z7x_B 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC-PSKISPFLHLDF 331 (520)
T ss_dssp EEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCCCCEEEC
T ss_pred EeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccc-hhhCCcccEEEe
Confidence 555543322333322 235555555555544331 267889999999
Q ss_pred CCCcccccccccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCC
Q 044579 741 SRCSTLNRLSTSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGN 820 (1103)
Q Consensus 741 ~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n 820 (1103)
++|.+.+.+|..++.+++|++|++++|... .+..+|..+..+++|++|+|++|.+...+|. ..+..+++|+.|+|++|
T Consensus 332 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~-~~~~~l~~L~~L~Ls~N 409 (520)
T 2z7x_B 332 SNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKK-GDCSWTKSLLSLNMSSN 409 (520)
T ss_dssp CSSCCCTTTTTTCCCCSSCCEEECCSSCCC-BHHHHHHHHTTCTTCCEEECCSSCCBCCGGG-CSCCCCTTCCEEECCSS
T ss_pred ECCccChhhhhhhccCCCCCEEEccCCccC-ccccchHHHhhCCCCCEEECCCCcCCccccc-chhccCccCCEEECcCC
Confidence 999888888888999999999999987543 2234567788899999999999987765653 23567889999999999
Q ss_pred Ccc-ccCccccCCCCCCEEeccCCcCCcccCccccccccceecccccccccCCCCch----hhhhhhcccCCCCCCC
Q 044579 821 NFE-SLPSSIKQLSQLRKLDLSNCNMLLSLPELPLFLEDLEARNCKRLQFLPEIPSC----LEELDASMLEKPPKTS 892 (1103)
Q Consensus 821 ~l~-~lp~~i~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~~~~c~~l~~~~~~p~~----l~~L~~~~~~~~~~~~ 892 (1103)
.++ .+|..+. ++|+.|+|++|++. .+|..+..+..|..+++.+|++. .+|.. +.+|..+.+++|+...
T Consensus 410 ~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 410 ILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp CCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcc
Confidence 886 5555443 78999999999866 78876667777777788777766 34442 4556666677776544
No 18
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=1.7e-27 Score=282.59 Aligned_cols=340 Identities=20% Similarity=0.163 Sum_probs=245.6
Q ss_pred cccCCCCcceeechHhhhcCcccceEEEecCCCCCccccCcceecCCCcccCCCceEEEEEcCCCCCCC-CCcc-ccccc
Q 044579 521 FLDLSKTKDIHLSSQAFANMSNLRLLKFYMPERGGVPIMSSKVHLDQGLEDLPEKLRYLHWHGYPLKTL-PFDF-ELENL 598 (1103)
Q Consensus 521 ~L~l~~~~~~~~~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~l-p~~~-~l~~L 598 (1103)
.||++++....+.+..|.++++|++|++++|.+.+ ..-+..+..++ +|++|++++|.+..+ |..+ .+++|
T Consensus 34 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~-------~i~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L 105 (455)
T 3v47_A 34 YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGL-------VIRNNTFRGLS-SLIILKLDYNQFLQLETGAFNGLANL 105 (455)
T ss_dssp EEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTC-------EECTTTTTTCT-TCCEEECTTCTTCEECTTTTTTCTTC
T ss_pred EEEecCCccCcCChhHhccCccccEEECcCCcccc-------eECcccccccc-cCCEEeCCCCccCccChhhccCcccC
Confidence 57778887777878888888888888888875421 11234455555 788888888888876 4445 68888
Q ss_pred cccccccccccc-cccc--cccCCcceEecCCCCCCCccCCC--CCCCCCccEEEecCCCCCCcccccccCC--CcccEE
Q 044579 599 IELRLPYSKVEQ-IWEG--KKEASKLKSIDLCHSQHLIRMPD--LSEIPNLERTNFFNCTNLVLVPSSIQNF--NNLSML 671 (1103)
Q Consensus 599 ~~L~L~~n~i~~-l~~~--~~~l~~L~~L~L~~~~~~~~~p~--l~~l~~L~~L~L~~~~~l~~~~~~i~~l--~~L~~L 671 (1103)
++|+|++|+++. ++.. +..+++|++|+|++|.+....|. +.++++|++|++++|......+..+..+ .+|+.|
T Consensus 106 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L 185 (455)
T 3v47_A 106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL 185 (455)
T ss_dssp CEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEE
T ss_pred CEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccc
Confidence 888888888874 3433 77888888888888887766665 7788888888888887766667777666 678888
Q ss_pred EccCCCCCcccCCC----------CCCCCCcEEEccCCcCCCcCCCc------CCCccEEecCCccceecC---------
Q 044579 672 CFRGCESLRSFPRD----------IHFVSPVTIDFSFCVNLTEFPKI------SGKITELNLCDTAIEEVP--------- 726 (1103)
Q Consensus 672 ~L~~~~~l~~lp~~----------~~l~~L~~L~l~~c~~l~~~~~~------~~~L~~L~L~~~~i~~lp--------- 726 (1103)
++++|... .++.. ..+++|++|++++|......|.. ..+|+.|++++|.+....
T Consensus 186 ~l~~n~l~-~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 264 (455)
T 3v47_A 186 RLSSITLQ-DMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDP 264 (455)
T ss_dssp ECTTCBCT-TCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCC
T ss_pred ccccCccc-ccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccC
Confidence 88886533 33221 14567888888887544433322 256777887776433211
Q ss_pred --cccc--CCCCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCC
Q 044579 727 --SSVE--CLTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPH 802 (1103)
Q Consensus 727 --~~~~--~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~ 802 (1103)
..+. ..++|+.|++++|.+.+..|..++.+++|++|+|++|..... .|..+.++++|++|+|++|.+.+..
T Consensus 265 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~-- 339 (455)
T 3v47_A 265 DNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI---DDNAFWGLTHLLKLNLSQNFLGSID-- 339 (455)
T ss_dssp CTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE---CTTTTTTCTTCCEEECCSSCCCEEC--
T ss_pred cccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccccc---ChhHhcCcccCCEEECCCCccCCcC--
Confidence 1121 236788888888888888888888888888888888754432 4667888888888888888765443
Q ss_pred CcccCCCCCCCEEeCCCCCcccc-CccccCCCCCCEEeccCCcCCcccCccccccccceecccccccccCCCC
Q 044579 803 SIDFCCLSSLQWLDLSGNNFESL-PSSIKQLSQLRKLDLSNCNMLLSLPELPLFLEDLEARNCKRLQFLPEIP 874 (1103)
Q Consensus 803 ~~~~~~l~~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~~~~c~~l~~~~~~p 874 (1103)
+..+..+++|++|+|++|.++.+ |..+..+++|++|+|++|++.+..+..+..++.|+.+++.+|.+.+..|
T Consensus 340 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 340 SRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp GGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred hhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 44567788888888888888866 6678888888888888888776555566777778888888888777666
No 19
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.95 E-value=3.8e-29 Score=246.30 Aligned_cols=121 Identities=19% Similarity=0.394 Sum_probs=114.8
Q ss_pred CCcccEEEcCccccccCchHHHHHHHHHhCCCeEEeeCccccCCCcchHHHHHHHhhcceEEEEecCCccCchhhHHHHH
Q 044579 7 QSKYEVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELKKGDEISPALSNAIESSDISIIIFSKGYASSRWCLNELV 86 (1103)
Q Consensus 7 ~~~~dvfis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~wc~~El~ 86 (1103)
.++|||||||+|+| +..|++||+++|+++||++|+|++++.+|+.|.++|.+||++|+++|+|+|++|++|.||++||.
T Consensus 18 ~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~El~ 96 (154)
T 3h16_A 18 APPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKELD 96 (154)
T ss_dssp CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHHHH
T ss_pred CCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHHHH
Confidence 48999999999999 55799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCcEEEEEEeeeCCcccccccCchhhhhhhcccC
Q 044579 87 KILDCKKMNAQIVIPVFYQVDPSDVRKQRGSFGEAFVNHDNN 128 (1103)
Q Consensus 87 ~~~~~~~~~~~~v~pif~~v~p~~vr~~~g~~~~~~~~~~~~ 128 (1103)
.+++|...++++|+||||+|+|++||+|.|.|+++|+.....
T Consensus 97 ~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~~~ 138 (154)
T 3h16_A 97 GLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNTST 138 (154)
T ss_dssp HHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEETTT
T ss_pred HHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhhcCc
Confidence 999998778889999999999999999999999998877554
No 20
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=2e-27 Score=290.77 Aligned_cols=138 Identities=21% Similarity=0.320 Sum_probs=91.9
Q ss_pred cccCCCCcceeechHhhhcCcccceEEEecCCCCCccccCcceecC-CCcccCCCceEEEEEcCCCCCCCCC-cc-cccc
Q 044579 521 FLDLSKTKDIHLSSQAFANMSNLRLLKFYMPERGGVPIMSSKVHLD-QGLEDLPEKLRYLHWHGYPLKTLPF-DF-ELEN 597 (1103)
Q Consensus 521 ~L~l~~~~~~~~~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~l~-~~l~~l~~~Lr~L~l~~~~l~~lp~-~~-~l~~ 597 (1103)
.||++++....+.+.+|.++++|++|++++|.+. .++ ..+..++ +|++|++++|.++.+|. .+ .+++
T Consensus 32 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~---------~i~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (570)
T 2z63_A 32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ---------TIEDGAYQSLS-HLSTLILTGNPIQSLALGAFSGLSS 101 (570)
T ss_dssp EEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC---------EECTTTTTTCT-TCCEEECTTCCCCEECTTTTTTCTT
T ss_pred EEEccCCccCccChhHhhCCCCceEEECCCCcCC---------ccCcccccCch-hCCEEeCcCCcCCccCHhhhcCccc
Confidence 4677777777777778888888888888877543 222 3344444 77777777777777663 33 6777
Q ss_pred cccccccccccccccc-ccccCCcceEecCCCCCCCc-cCCC-CCCCCCccEEEecCCCCCCcccccccCCCcc
Q 044579 598 LIELRLPYSKVEQIWE-GKKEASKLKSIDLCHSQHLI-RMPD-LSEIPNLERTNFFNCTNLVLVPSSIQNFNNL 668 (1103)
Q Consensus 598 L~~L~L~~n~i~~l~~-~~~~l~~L~~L~L~~~~~~~-~~p~-l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L 668 (1103)
|++|++++|+++.++. .+..+++|++|+|++|.+.. .+|. ++++++|++|++++|......+..++.+++|
T Consensus 102 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 175 (570)
T 2z63_A 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (570)
T ss_dssp CCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred cccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhcc
Confidence 7777777777777664 46777777777777776554 3343 6777777777777765444334444444444
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=4.1e-27 Score=286.87 Aligned_cols=353 Identities=17% Similarity=0.127 Sum_probs=252.0
Q ss_pred cccCCCCcceeechHhhhcCcccceEEEecCCCCCccccCcceecCCCcccCCCceEEEEEcCCCCCCCCCccccccccc
Q 044579 521 FLDLSKTKDIHLSSQAFANMSNLRLLKFYMPERGGVPIMSSKVHLDQGLEDLPEKLRYLHWHGYPLKTLPFDFELENLIE 600 (1103)
Q Consensus 521 ~L~l~~~~~~~~~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~ 600 (1103)
.|+++++....+.+.+|.++++|++|++++|.+.+ ..+..+..++ +|++|++++|.++.+|.. .+++|++
T Consensus 56 ~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~--------~~~~~~~~l~-~L~~L~Ls~N~l~~lp~~-~l~~L~~ 125 (562)
T 3a79_B 56 ALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS--------LDFHVFLFNQ-DLEYLDVSHNRLQNISCC-PMASLRH 125 (562)
T ss_dssp EEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCE--------ECTTTTTTCT-TCCEEECTTSCCCEECSC-CCTTCSE
T ss_pred EEECCCCCccccChhhhccCCCccEEECCCCCCCc--------CCHHHhCCCC-CCCEEECCCCcCCccCcc-ccccCCE
Confidence 57888888888999999999999999999996532 2245566666 899999999999999988 8999999
Q ss_pred cccccccccccc--cccccCCcceEecCCCCCCCccCCCCCCCCCc--cEEEecCCCC--CCcccccccC----------
Q 044579 601 LRLPYSKVEQIW--EGKKEASKLKSIDLCHSQHLIRMPDLSEIPNL--ERTNFFNCTN--LVLVPSSIQN---------- 664 (1103)
Q Consensus 601 L~L~~n~i~~l~--~~~~~l~~L~~L~L~~~~~~~~~p~l~~l~~L--~~L~L~~~~~--l~~~~~~i~~---------- 664 (1103)
|+|++|+++.++ ..+.++++|++|+|++|.+.. ..+..+++| ++|++++|.. ....|.++..
T Consensus 126 L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l 203 (562)
T 3a79_B 126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVF 203 (562)
T ss_dssp EECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEE
T ss_pred EECCCCCccccCchHhhcccCcccEEecCCCcccc--CchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEe
Confidence 999999999765 689999999999999998654 356666666 9999999876 4444444433
Q ss_pred ----------------CCcccEEEccCCCC--------------------------------CcccCCCCCCCCCcEEEc
Q 044579 665 ----------------FNNLSMLCFRGCES--------------------------------LRSFPRDIHFVSPVTIDF 696 (1103)
Q Consensus 665 ----------------l~~L~~L~L~~~~~--------------------------------l~~lp~~~~l~~L~~L~l 696 (1103)
+++|+.|++++|.. +..++......+|++|++
T Consensus 204 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l 283 (562)
T 3a79_B 204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI 283 (562)
T ss_dssp CSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEE
T ss_pred cCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEE
Confidence 44566666665420 000011112235666666
Q ss_pred cCCcCCCcCCCcC----------------------------------CCccEEecCCccceecCccccCCCCCCEEecCC
Q 044579 697 SFCVNLTEFPKIS----------------------------------GKITELNLCDTAIEEVPSSVECLTNLKELYLSR 742 (1103)
Q Consensus 697 ~~c~~l~~~~~~~----------------------------------~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~ 742 (1103)
++|.....+|... .+|+.|++++|.+..++. ...+++|+.|++++
T Consensus 284 ~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~l~~ 362 (562)
T 3a79_B 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVC-PPSPSSFTFLNFTQ 362 (562)
T ss_dssp EEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCCCCEEECCS
T ss_pred eccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccC-ccCCCCceEEECCC
Confidence 6654433444332 246677777776654431 26788889999998
Q ss_pred CcccccccccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCc
Q 044579 743 CSTLNRLSTSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNF 822 (1103)
Q Consensus 743 ~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l 822 (1103)
|.+.+..|..++++++|+.|++++|.. ..+..+|..+.++++|+.|+|++|.+...+|. ..+..+++|+.|+|++|.+
T Consensus 363 n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~~l~~L~~L~l~~n~l 440 (562)
T 3a79_B 363 NVFTDSVFQGCSTLKRLQTLILQRNGL-KNFFKVALMTKNMSSLETLDVSLNSLNSHAYD-RTCAWAESILVLNLSSNML 440 (562)
T ss_dssp SCCCTTTTTTCCSCSSCCEEECCSSCC-CBTTHHHHTTTTCTTCCEEECTTSCCBSCCSS-CCCCCCTTCCEEECCSSCC
T ss_pred CccccchhhhhcccCCCCEEECCCCCc-CCcccchhhhcCCCCCCEEECCCCcCCCccCh-hhhcCcccCCEEECCCCCC
Confidence 888888888888888999999988743 23233456678888899999988887765653 3466788888999988888
Q ss_pred c-ccCccccCCCCCCEEeccCCcCCcccCccccccccceecccccccccCCCCch----hhhhhhcccCCCCCCC
Q 044579 823 E-SLPSSIKQLSQLRKLDLSNCNMLLSLPELPLFLEDLEARNCKRLQFLPEIPSC----LEELDASMLEKPPKTS 892 (1103)
Q Consensus 823 ~-~lp~~i~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~~~~c~~l~~~~~~p~~----l~~L~~~~~~~~~~~~ 892 (1103)
+ .+|..+. ++|+.|+|++|++. .+|.....+..|..+++.+|++. .+|.. +.+|..+.+.+|+...
T Consensus 441 ~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 441 TGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp CGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred Ccchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCC
Confidence 6 4454433 68888889888754 67766667777777788777766 34443 4455566677776544
No 22
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=2.8e-27 Score=287.87 Aligned_cols=369 Identities=18% Similarity=0.174 Sum_probs=243.8
Q ss_pred cccCCCCcceeechHhhhcCcccceEEEecCCCCCccccCcceecCCCcccCCCceEEEEEcCCCCCCCCCc-c-ccccc
Q 044579 521 FLDLSKTKDIHLSSQAFANMSNLRLLKFYMPERGGVPIMSSKVHLDQGLEDLPEKLRYLHWHGYPLKTLPFD-F-ELENL 598 (1103)
Q Consensus 521 ~L~l~~~~~~~~~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~l~~L 598 (1103)
.|+++++....+.+..|.++++|++|++++|.+.+ ..+..+..++ +|++|++++|.++.+|.. + .+++|
T Consensus 30 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~--------~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L 100 (549)
T 2z81_A 30 SLDLSFNKITYIGHGDLRACANLQVLILKSSRINT--------IEGDAFYSLG-SLEHLDLSDNHLSSLSSSWFGPLSSL 100 (549)
T ss_dssp EEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE--------ECTTTTTTCT-TCCEEECTTSCCCSCCHHHHTTCTTC
T ss_pred EEECcCCccCccChhhhhcCCcccEEECCCCCcCc--------cChhhccccc-cCCEEECCCCccCccCHHHhccCCCC
Confidence 57888888888888899999999999999886532 2234566666 899999999999988876 4 78999
Q ss_pred ccccccccccccc--ccccccCCcceEecCCCCCCCccCC--CCCCCCCccEEEecCCCCCCcccccccCCCcccEEEcc
Q 044579 599 IELRLPYSKVEQI--WEGKKEASKLKSIDLCHSQHLIRMP--DLSEIPNLERTNFFNCTNLVLVPSSIQNFNNLSMLCFR 674 (1103)
Q Consensus 599 ~~L~L~~n~i~~l--~~~~~~l~~L~~L~L~~~~~~~~~p--~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~ 674 (1103)
++|+|++|.++.+ |..+.++++|++|++++|.....+| .+.++++|++|++++|......|..++.+++|+.|+++
T Consensus 101 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 180 (549)
T 2z81_A 101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180 (549)
T ss_dssp CEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred cEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecc
Confidence 9999999999854 6778899999999999998666665 48899999999999988777777777766666666555
Q ss_pred CCCCCcccCCCC--CCCCCcEEEccCCcCCC-------------------------------------------------
Q 044579 675 GCESLRSFPRDI--HFVSPVTIDFSFCVNLT------------------------------------------------- 703 (1103)
Q Consensus 675 ~~~~l~~lp~~~--~l~~L~~L~l~~c~~l~------------------------------------------------- 703 (1103)
+|.. ..+|..+ .+++|+.|++++|....
T Consensus 181 ~n~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~ 259 (549)
T 2z81_A 181 LSES-AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFD 259 (549)
T ss_dssp CSBS-TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEE
T ss_pred cCcc-cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccc
Confidence 5431 1111111 22333333333221100
Q ss_pred --------cC------------------------C------------CcCCCccEEecCCccceecCccc-cCCCCCCEE
Q 044579 704 --------EF------------------------P------------KISGKITELNLCDTAIEEVPSSV-ECLTNLKEL 738 (1103)
Q Consensus 704 --------~~------------------------~------------~~~~~L~~L~L~~~~i~~lp~~~-~~l~~L~~L 738 (1103)
.+ | ...++|+.|++++|.+..+|..+ ..+++|+.|
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L 339 (549)
T 2z81_A 260 DCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFL 339 (549)
T ss_dssp SCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEE
T ss_pred cccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEE
Confidence 00 0 01245677777777777788766 468888888
Q ss_pred ecCCCcccccccc---cccCCCCCcEEeecCCCCCCccccCC---ccccCCCCCCeeeccCCCCCCCCCCCcccCCCCCC
Q 044579 739 YLSRCSTLNRLST---SICKLKSLHELILSDCLSLETITELP---SSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSL 812 (1103)
Q Consensus 739 ~L~~~~~~~~lp~---~l~~l~~L~~L~L~~~~~l~~i~~lp---~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L 812 (1103)
+|++|.+.+.+|. .++.+++|++|+|++|... .+| ..+..+++|++|+|++|.+. .+| ..+..+++|
T Consensus 340 ~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~----~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp--~~~~~~~~L 412 (549)
T 2z81_A 340 DLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR----SMQKTGEILLTLKNLTSLDISRNTFH-PMP--DSCQWPEKM 412 (549)
T ss_dssp ECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCC----CHHHHHHHGGGCTTCCEEECTTCCCC-CCC--SCCCCCTTC
T ss_pred EccCCccccccccchhhhhccccCcEEEccCCccc----ccccchhhhhcCCCCCEEECCCCCCc-cCC--hhhcccccc
Confidence 8888888776643 3677888888888887432 233 34677888888888888754 564 345667888
Q ss_pred CEEeCCCCCccccCccccCCCCCCEEeccCCcCCcccCccccccccceecccccccccCCCCc--hhhhhhhcccCCCCC
Q 044579 813 QWLDLSGNNFESLPSSIKQLSQLRKLDLSNCNMLLSLPELPLFLEDLEARNCKRLQFLPEIPS--CLEELDASMLEKPPK 890 (1103)
Q Consensus 813 ~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~~~~c~~l~~~~~~p~--~l~~L~~~~~~~~~~ 890 (1103)
+.|+|++|.++.+|..+. ++|+.|+|++|++.+.+ ..++.|+.+++++|++. .+|. .+.+|..+.+++|..
T Consensus 413 ~~L~Ls~N~l~~l~~~~~--~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~~~~l~~L~~L~Ls~N~l 485 (549)
T 2z81_A 413 RFLNLSSTGIRVVKTCIP--QTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPDASLFPVLLVMKISRNQL 485 (549)
T ss_dssp CEEECTTSCCSCCCTTSC--TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCCGGGCTTCCEEECCSSCC
T ss_pred cEEECCCCCcccccchhc--CCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCCcccCccCCEEecCCCcc
Confidence 888888888877775542 46777777777654432 23333444444444443 3333 244555556666655
Q ss_pred CCCCccchhcccccceeeecccc
Q 044579 891 TSHVDEFWTEEMLSIKFKFTNCL 913 (1103)
Q Consensus 891 ~~~~~~~~~~~~~~~~~~~~~C~ 913 (1103)
....+...........+++.+|.
T Consensus 486 ~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 486 KSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp CCCCTTGGGGCTTCCEEECCSSC
T ss_pred CCcCHHHHhcCcccCEEEecCCC
Confidence 54443333333333455665553
No 23
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=9.5e-27 Score=296.72 Aligned_cols=263 Identities=19% Similarity=0.214 Sum_probs=166.0
Q ss_pred cccCCCCcceeechHhhhcCcccceEEEecCCCCCccccCcceec-CCCcccCCCceEEEEEcCCCCCCC-CCcc-cccc
Q 044579 521 FLDLSKTKDIHLSSQAFANMSNLRLLKFYMPERGGVPIMSSKVHL-DQGLEDLPEKLRYLHWHGYPLKTL-PFDF-ELEN 597 (1103)
Q Consensus 521 ~L~l~~~~~~~~~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~l-~~~l~~l~~~Lr~L~l~~~~l~~l-p~~~-~l~~ 597 (1103)
.||++++....+.+..|.++++|++|++++|.. ...+ +..+..++ +|++|++++|.+..+ |..+ .+++
T Consensus 28 ~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~--------~~~i~~~~f~~L~-~L~~L~Ls~N~l~~~~p~~~~~l~~ 98 (844)
T 3j0a_A 28 RLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT--------PLTIDKEAFRNLP-NLRILDLGSSKIYFLHPDAFQGLFH 98 (844)
T ss_dssp EEEEESCCCCEECSSSCSSCCSCSEEEECTTCC--------CCEECTTTTSSCT-TCCEEECTTCCCCEECTTSSCSCSS
T ss_pred EEECCCCcCCccChhHCcccccCeEEeCCCCCC--------ccccCHHHhcCCC-CCCEEECCCCcCcccCHhHccCCcc
Confidence 577888888888888999999999999988743 2233 55667776 899999999999877 5556 7899
Q ss_pred ccccccccccccc-cccc--cccCCcceEecCCCCCCCccCC--CCCCCCCccEEEecCCCCCCcccccccCC--CcccE
Q 044579 598 LIELRLPYSKVEQ-IWEG--KKEASKLKSIDLCHSQHLIRMP--DLSEIPNLERTNFFNCTNLVLVPSSIQNF--NNLSM 670 (1103)
Q Consensus 598 L~~L~L~~n~i~~-l~~~--~~~l~~L~~L~L~~~~~~~~~p--~l~~l~~L~~L~L~~~~~l~~~~~~i~~l--~~L~~ 670 (1103)
|++|+|++|.+.. ++.. +.++++|++|+|++|.+....+ .|+++++|++|++++|......+..+..+ ++|+.
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~ 178 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCC
T ss_pred cCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccce
Confidence 9999999999885 4544 8889999999999998766554 38899999999999987666666666655 66666
Q ss_pred EEccCCCCCcccCCCC-CC------CCCcEEEccCCcCCCcCCC------------------------------------
Q 044579 671 LCFRGCESLRSFPRDI-HF------VSPVTIDFSFCVNLTEFPK------------------------------------ 707 (1103)
Q Consensus 671 L~L~~~~~l~~lp~~~-~l------~~L~~L~l~~c~~l~~~~~------------------------------------ 707 (1103)
|++++|......|..+ .+ .+|+.|++++|......+.
T Consensus 179 L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~ 258 (844)
T 3j0a_A 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN 258 (844)
T ss_dssp CEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGT
T ss_pred EECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChh
Confidence 6666665444444332 11 1355666655421110000
Q ss_pred -----cCCCccEEecCCccceec-CccccCCCCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccccCCcccc
Q 044579 708 -----ISGKITELNLCDTAIEEV-PSSVECLTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELPSSFA 781 (1103)
Q Consensus 708 -----~~~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~ 781 (1103)
...+|+.|++++|.+..+ |..+..+++|+.|+|++|.+.+..|..+.++++|++|+|++|..... .|..+.
T Consensus 259 ~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~~~~~~ 335 (844)
T 3j0a_A 259 TFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL---YSSNFY 335 (844)
T ss_dssp TTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCC---CSCSCS
T ss_pred hhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCcc---CHHHhc
Confidence 012455555555555433 23345555555555555555444444555555555555555432211 233444
Q ss_pred CCCCCCeeeccCCC
Q 044579 782 NLEGLEKLVLVGCS 795 (1103)
Q Consensus 782 ~l~~L~~L~L~~~~ 795 (1103)
.+++|+.|+|++|.
T Consensus 336 ~l~~L~~L~L~~N~ 349 (844)
T 3j0a_A 336 GLPKVAYIDLQKNH 349 (844)
T ss_dssp SCTTCCEEECCSCC
T ss_pred CCCCCCEEECCCCC
Confidence 44444444444443
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=8.4e-27 Score=281.61 Aligned_cols=365 Identities=18% Similarity=0.130 Sum_probs=263.8
Q ss_pred cccCCCCcceeechHhhhcCcccceEEEecCCCCCccccCcceecCCCcccCCCceEEEEEcCCCCCCC-CCcc-ccccc
Q 044579 521 FLDLSKTKDIHLSSQAFANMSNLRLLKFYMPERGGVPIMSSKVHLDQGLEDLPEKLRYLHWHGYPLKTL-PFDF-ELENL 598 (1103)
Q Consensus 521 ~L~l~~~~~~~~~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~l-p~~~-~l~~L 598 (1103)
.+|++++....++...+ ++|+.|++++|.+.+. .+..+..++ +|++|++++|.++.+ |..+ .+++|
T Consensus 4 ~l~ls~n~l~~ip~~~~---~~L~~L~Ls~n~i~~~--------~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L 71 (520)
T 2z7x_B 4 LVDRSKNGLIHVPKDLS---QKTTILNISQNYISEL--------WTSDILSLS-KLRILIISHNRIQYLDISVFKFNQEL 71 (520)
T ss_dssp EEECTTSCCSSCCCSCC---TTCSEEECCSSCCCCC--------CHHHHTTCT-TCCEEECCSSCCCEEEGGGGTTCTTC
T ss_pred eEecCCCCccccccccc---ccccEEECCCCccccc--------Chhhccccc-cccEEecCCCccCCcChHHhhcccCC
Confidence 57788887777765443 8999999999976432 123455565 899999999999988 4455 89999
Q ss_pred cccccccccccccccccccCCcceEecCCCCCCCc-cCC-CCCCCCCccEEEecCCCCCCcccccccCCCcc--cEEEcc
Q 044579 599 IELRLPYSKVEQIWEGKKEASKLKSIDLCHSQHLI-RMP-DLSEIPNLERTNFFNCTNLVLVPSSIQNFNNL--SMLCFR 674 (1103)
Q Consensus 599 ~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~-~~p-~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L--~~L~L~ 674 (1103)
++|+|++|+++.+|.. .+++|++|+|++|.+.. .+| .++++++|++|++++|.... ..+..+++| +.|+++
T Consensus 72 ~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~ 146 (520)
T 2z7x_B 72 EYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLV 146 (520)
T ss_dssp CEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEE
T ss_pred CEEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEee
Confidence 9999999999999987 89999999999999766 355 58999999999999986543 457777888 999999
Q ss_pred CCCC--CcccCCCC---------------------------CCCCCcEEEccCCc-------------CCCcCCC-----
Q 044579 675 GCES--LRSFPRDI---------------------------HFVSPVTIDFSFCV-------------NLTEFPK----- 707 (1103)
Q Consensus 675 ~~~~--l~~lp~~~---------------------------~l~~L~~L~l~~c~-------------~l~~~~~----- 707 (1103)
+|.. ....|..+ .+++|+.|++++|. .+..++.
T Consensus 147 ~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~ 226 (520)
T 2z7x_B 147 LGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLT 226 (520)
T ss_dssp ECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEE
T ss_pred cccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhcc
Confidence 9876 44444433 24566666666653 0011110
Q ss_pred ------------------cCCCccEEecCCccce-ecCccc-----cCCCCCCEEec-----------------------
Q 044579 708 ------------------ISGKITELNLCDTAIE-EVPSSV-----ECLTNLKELYL----------------------- 740 (1103)
Q Consensus 708 ------------------~~~~L~~L~L~~~~i~-~lp~~~-----~~l~~L~~L~L----------------------- 740 (1103)
...+|++|++++|.+. .+|..+ +.+++|+.+++
T Consensus 227 l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~ 306 (520)
T 2z7x_B 227 LNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKN 306 (520)
T ss_dssp EEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSE
T ss_pred ccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeE
Confidence 0137889999999988 888877 66655555554
Q ss_pred ---CCCcccccccccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCC--CCCCCcccCCCCCCCEE
Q 044579 741 ---SRCSTLNRLSTSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLN--KLPHSIDFCCLSSLQWL 815 (1103)
Q Consensus 741 ---~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~--~lp~~~~~~~l~~L~~L 815 (1103)
++|.+... + ....+++|++|++++|..... +|..++.+++|+.|+|++|.+.+ .+ +..+..+++|+.|
T Consensus 307 L~l~~n~l~~~-~-~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~L~~N~l~~l~~~--~~~~~~l~~L~~L 379 (520)
T 2z7x_B 307 FTVSGTRMVHM-L-CPSKISPFLHLDFSNNLLTDT---VFENCGHLTELETLILQMNQLKELSKI--AEMTTQMKSLQQL 379 (520)
T ss_dssp EEEESSCCCCC-C-CCSSCCCCCEEECCSSCCCTT---TTTTCCCCSSCCEEECCSSCCCBHHHH--HHHHTTCTTCCEE
T ss_pred EEcCCCccccc-c-chhhCCcccEEEeECCccChh---hhhhhccCCCCCEEEccCCccCccccc--hHHHhhCCCCCEE
Confidence 44443221 1 126899999999999865543 78889999999999999998764 33 3446789999999
Q ss_pred eCCCCCccc-cCcc-ccCCCCCCEEeccCCcCCcccCccc-cccccceecccccccccCCCCch---hhhhhhcccCCCC
Q 044579 816 DLSGNNFES-LPSS-IKQLSQLRKLDLSNCNMLLSLPELP-LFLEDLEARNCKRLQFLPEIPSC---LEELDASMLEKPP 889 (1103)
Q Consensus 816 ~Ls~n~l~~-lp~~-i~~l~~L~~L~L~~n~~l~~lp~~~-~~L~~L~~~~c~~l~~~~~~p~~---l~~L~~~~~~~~~ 889 (1103)
+|++|.++. +|.. +..+++|+.|+|++|++.+.+|..+ .+|+.|+ +++|++. .+|.. +.+|..+.+++|.
T Consensus 380 ~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~---Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~ 455 (520)
T 2z7x_B 380 DISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLD---LHSNKIK-SIPKQVVKLEALQELNVASNQ 455 (520)
T ss_dssp ECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEE---CCSSCCC-CCCGGGGGCTTCCEEECCSSC
T ss_pred ECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEE---CCCCccc-ccchhhhcCCCCCEEECCCCc
Confidence 999999997 8875 7889999999999999988888655 3555555 4555554 56654 4566777788887
Q ss_pred CCCCCccchhcccccceeeecccc
Q 044579 890 KTSHVDEFWTEEMLSIKFKFTNCL 913 (1103)
Q Consensus 890 ~~~~~~~~~~~~~~~~~~~~~~C~ 913 (1103)
.................+.+.++.
T Consensus 456 l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 456 LKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCHHHhccCCcccEEECcCCC
Confidence 664322212222334566777653
No 25
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=4.3e-26 Score=278.90 Aligned_cols=356 Identities=21% Similarity=0.170 Sum_probs=244.6
Q ss_pred cccCCCCcceeechHhhhcCcccceEEEecCCCCCccccCcceecC-CCcccCCCceEEEEEcCCCCCCCCCc-c-cccc
Q 044579 521 FLDLSKTKDIHLSSQAFANMSNLRLLKFYMPERGGVPIMSSKVHLD-QGLEDLPEKLRYLHWHGYPLKTLPFD-F-ELEN 597 (1103)
Q Consensus 521 ~L~l~~~~~~~~~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~l~-~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~l~~ 597 (1103)
.||++++....+.+.+|.++++|++|++++|.+. .++ ..+..++ +|++|++++|.++.+|.. + .+++
T Consensus 56 ~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~---------~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~ 125 (570)
T 2z63_A 56 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ---------SLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKT 125 (570)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC---------EECTTTTTTCT-TCCEEECTTSCCCCSTTCSCTTCTT
T ss_pred EEECCCCcCCccCcccccCchhCCEEeCcCCcCC---------ccCHhhhcCcc-ccccccccccccccCCCcccccccc
Confidence 4677777777777778888888888888877543 222 3444444 677777777777766652 2 6677
Q ss_pred ccccccccccccc--cccccccCCcceEecCCCCCCCccCCC-CCCCC---------------------------CccEE
Q 044579 598 LIELRLPYSKVEQ--IWEGKKEASKLKSIDLCHSQHLIRMPD-LSEIP---------------------------NLERT 647 (1103)
Q Consensus 598 L~~L~L~~n~i~~--l~~~~~~l~~L~~L~L~~~~~~~~~p~-l~~l~---------------------------~L~~L 647 (1103)
|++|+|++|.++. +|..+.++++|++|++++|.+....+. +..++ +|+.|
T Consensus 126 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L 205 (570)
T 2z63_A 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKL 205 (570)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEE
T ss_pred ccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeE
Confidence 7777777777664 566677777777777776654332221 22222 23333
Q ss_pred EecCCC----------------------------------------------------------CCCcccccccCCCccc
Q 044579 648 NFFNCT----------------------------------------------------------NLVLVPSSIQNFNNLS 669 (1103)
Q Consensus 648 ~L~~~~----------------------------------------------------------~l~~~~~~i~~l~~L~ 669 (1103)
++.+|. ....+|..+..+++|+
T Consensus 206 ~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~ 285 (570)
T 2z63_A 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS 285 (570)
T ss_dssp EEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCS
T ss_pred ecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCccc
Confidence 333320 0011223344455555
Q ss_pred EEEccCCCCCcccCCCC---------------------CCCCCcEEEccCCcCCCcCC-CcCCCccEEecCCccceec--
Q 044579 670 MLCFRGCESLRSFPRDI---------------------HFVSPVTIDFSFCVNLTEFP-KISGKITELNLCDTAIEEV-- 725 (1103)
Q Consensus 670 ~L~L~~~~~l~~lp~~~---------------------~l~~L~~L~l~~c~~l~~~~-~~~~~L~~L~L~~~~i~~l-- 725 (1103)
.|++++|. +..+|..+ .+++|+.|++++|.....++ ..+.+|+.|++++|.+..+
T Consensus 286 ~L~l~~~~-l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 364 (570)
T 2z63_A 286 SFSLVSVT-IERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGC 364 (570)
T ss_dssp EEEEESCE-ECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEE
T ss_pred EEEecCcc-chhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCcccc
Confidence 55555542 23344433 34455555555544333333 3456899999999998866
Q ss_pred -CccccCCCCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccccCC-ccccCCCCCCeeeccCCCCCCCCCCC
Q 044579 726 -PSSVECLTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELP-SSFANLEGLEKLVLVGCSKLNKLPHS 803 (1103)
Q Consensus 726 -p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp-~~~~~l~~L~~L~L~~~~~~~~lp~~ 803 (1103)
|..+..+++|+.|++++|.+.+..+. +..+++|++|++++|..... .| ..+.++++|++|++++|.+.... +
T Consensus 365 ~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~---~~~~~~~~l~~L~~L~l~~n~l~~~~--~ 438 (570)
T 2z63_A 365 CSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQM---SEFSVFLSLRNLIYLDISHTHTRVAF--N 438 (570)
T ss_dssp EEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESC---TTSCTTTTCTTCCEEECTTSCCEECC--T
T ss_pred ccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccc---cchhhhhcCCCCCEEeCcCCcccccc--h
Confidence 67789999999999999987665444 99999999999999754322 23 46789999999999999877666 4
Q ss_pred cccCCCCCCCEEeCCCCCcc--ccCccccCCCCCCEEeccCCcCCcccCccccccccceecccccccccCCCCch---hh
Q 044579 804 IDFCCLSSLQWLDLSGNNFE--SLPSSIKQLSQLRKLDLSNCNMLLSLPELPLFLEDLEARNCKRLQFLPEIPSC---LE 878 (1103)
Q Consensus 804 ~~~~~l~~L~~L~Ls~n~l~--~lp~~i~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~~~~c~~l~~~~~~p~~---l~ 878 (1103)
..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|++.+..|..+..+..|..++++++++.+..|.. +.
T Consensus 439 ~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 518 (570)
T 2z63_A 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLT 518 (570)
T ss_dssp TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred hhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhccc
Confidence 55778999999999999997 69999999999999999999999888988888888888888888877666544 45
Q ss_pred hhhhcccCCCCCCCC
Q 044579 879 ELDASMLEKPPKTSH 893 (1103)
Q Consensus 879 ~L~~~~~~~~~~~~~ 893 (1103)
+|..+.+.+|+....
T Consensus 519 ~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 519 SLQKIWLHTNPWDCS 533 (570)
T ss_dssp TCCEEECCSSCBCCC
T ss_pred CCcEEEecCCcccCC
Confidence 566677777775543
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=3.2e-26 Score=271.60 Aligned_cols=353 Identities=17% Similarity=0.127 Sum_probs=265.2
Q ss_pred cccCCCCcceeechHhhhcCcccceEEEecCCCCCccccCcceecCCCcccCCCceEEEEEcCCCCC-CCCC-cc-cccc
Q 044579 521 FLDLSKTKDIHLSSQAFANMSNLRLLKFYMPERGGVPIMSSKVHLDQGLEDLPEKLRYLHWHGYPLK-TLPF-DF-ELEN 597 (1103)
Q Consensus 521 ~L~l~~~~~~~~~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~-~lp~-~~-~l~~ 597 (1103)
.+++++.....++. -.++|++|++++|.+.+ ..+..+..++ +|++|++++|.+. .+|. .+ .+++
T Consensus 14 ~~~c~~~~l~~lp~----l~~~l~~L~Ls~n~i~~--------~~~~~~~~l~-~L~~L~L~~n~~~~~i~~~~~~~l~~ 80 (455)
T 3v47_A 14 NAICINRGLHQVPE----LPAHVNYVDLSLNSIAE--------LNETSFSRLQ-DLQFLKVEQQTPGLVIRNNTFRGLSS 80 (455)
T ss_dssp EEECCSSCCSSCCC----CCTTCCEEECCSSCCCE--------ECTTTTSSCT-TCCEEECCCCSTTCEECTTTTTTCTT
T ss_pred ccCcCCCCcccCCC----CCCccCEEEecCCccCc--------CChhHhccCc-cccEEECcCCcccceECccccccccc
Confidence 45566655555554 22789999999886531 2355666666 8999999999886 5543 34 7899
Q ss_pred cccccccccccccc-ccccccCCcceEecCCCCCCCccCC-C--CCCCCCccEEEecCCCCCCccccc-ccCCCcccEEE
Q 044579 598 LIELRLPYSKVEQI-WEGKKEASKLKSIDLCHSQHLIRMP-D--LSEIPNLERTNFFNCTNLVLVPSS-IQNFNNLSMLC 672 (1103)
Q Consensus 598 L~~L~L~~n~i~~l-~~~~~~l~~L~~L~L~~~~~~~~~p-~--l~~l~~L~~L~L~~~~~l~~~~~~-i~~l~~L~~L~ 672 (1103)
|++|+|++|++..+ |..+..+++|++|+|++|.+....+ . +..+++|++|++++|......|.. +.++++|++|+
T Consensus 81 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 160 (455)
T 3v47_A 81 LIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLD 160 (455)
T ss_dssp CCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEE
T ss_pred CCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEe
Confidence 99999999999876 6778999999999999998765433 2 888999999999998776666765 78999999999
Q ss_pred ccCCCCCcccCCCC---CCCCCcEEEccCCcCCCcCCC------------cCCCccEEecCCccce-ecCccccC---CC
Q 044579 673 FRGCESLRSFPRDI---HFVSPVTIDFSFCVNLTEFPK------------ISGKITELNLCDTAIE-EVPSSVEC---LT 733 (1103)
Q Consensus 673 L~~~~~l~~lp~~~---~l~~L~~L~l~~c~~l~~~~~------------~~~~L~~L~L~~~~i~-~lp~~~~~---l~ 733 (1103)
+++|......|..+ ...+|+.|++++|.... ++. ...+|++|++++|.+. .+|..+.. .+
T Consensus 161 L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~-~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~ 239 (455)
T 3v47_A 161 LTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQD-MNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGT 239 (455)
T ss_dssp CTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTT-CSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTC
T ss_pred CCCCcccccChhhhhccccccccccccccCcccc-cchhhccccccccccccceeeeEecCCCcccccchhhhhcccccc
Confidence 99987665555555 33788899998865433 322 1246889999999887 44555543 38
Q ss_pred CCCEEecCCCcccccc----------ccccc--CCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCC
Q 044579 734 NLKELYLSRCSTLNRL----------STSIC--KLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLP 801 (1103)
Q Consensus 734 ~L~~L~L~~~~~~~~l----------p~~l~--~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp 801 (1103)
+|+.|++++|...+.. +..+. ..++|+.|++++|..... .|..++.+++|+.|+|++|.+.+..
T Consensus 240 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~- 315 (455)
T 3v47_A 240 KIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL---LKSVFSHFTDLEQLTLAQNEINKID- 315 (455)
T ss_dssp CEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEE---CTTTTTTCTTCCEEECTTSCCCEEC-
T ss_pred ceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcccccc---chhhcccCCCCCEEECCCCcccccC-
Confidence 8999999988654321 11122 236899999999865543 6788999999999999999977655
Q ss_pred CCcccCCCCCCCEEeCCCCCcccc-CccccCCCCCCEEeccCCcCCcccCccccccccceecccccccccCCCCc---hh
Q 044579 802 HSIDFCCLSSLQWLDLSGNNFESL-PSSIKQLSQLRKLDLSNCNMLLSLPELPLFLEDLEARNCKRLQFLPEIPS---CL 877 (1103)
Q Consensus 802 ~~~~~~~l~~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~~~~c~~l~~~~~~p~---~l 877 (1103)
+..+..+++|+.|+|++|.++.+ |..+..+++|+.|+|++|++.+..|..+..+..|..+++.+|++.+..+. .+
T Consensus 316 -~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 394 (455)
T 3v47_A 316 -DNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRL 394 (455)
T ss_dssp -TTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred -hhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccC
Confidence 44577899999999999999977 56789999999999999999888888888888888888888887654443 34
Q ss_pred hhhhhcccCCCCCCC
Q 044579 878 EELDASMLEKPPKTS 892 (1103)
Q Consensus 878 ~~L~~~~~~~~~~~~ 892 (1103)
.+|..+.+++|+...
T Consensus 395 ~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 395 TSLQKIWLHTNPWDC 409 (455)
T ss_dssp TTCCEEECCSSCBCC
T ss_pred CcccEEEccCCCccc
Confidence 556666666666543
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=5.4e-26 Score=276.91 Aligned_cols=366 Identities=15% Similarity=0.114 Sum_probs=260.0
Q ss_pred ccccCCCCcceeechHhhhcCcccceEEEecCCCCCccccCcceecCCCcccCCCceEEEEEcCCCCCCCCC-cc-cccc
Q 044579 520 IFLDLSKTKDIHLSSQAFANMSNLRLLKFYMPERGGVPIMSSKVHLDQGLEDLPEKLRYLHWHGYPLKTLPF-DF-ELEN 597 (1103)
Q Consensus 520 i~L~l~~~~~~~~~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~-~~-~l~~ 597 (1103)
..+|++++....++...+ ++|+.|++++|.+.+. .+..+..++ +|++|++++|.++.++. .+ .+++
T Consensus 34 ~~l~ls~~~L~~ip~~~~---~~L~~L~Ls~N~i~~~--------~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~ 101 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDLP---PRTKALSLSQNSISEL--------RMPDISFLS-ELRVLRLSHNRIRSLDFHVFLFNQD 101 (562)
T ss_dssp CEEECTTSCCCSCCTTSC---TTCCEEECCSSCCCCC--------CGGGTTTCT-TCCEEECCSCCCCEECTTTTTTCTT
T ss_pred cEEEcCCCCCccCCCCCC---CCcCEEECCCCCcccc--------ChhhhccCC-CccEEECCCCCCCcCCHHHhCCCCC
Confidence 457888877777765443 7899999999976432 124566666 89999999999998854 45 7899
Q ss_pred ccccccccccccccccccccCCcceEecCCCCCCCcc-CC-CCCCCCCccEEEecCCCCCCcccccccCCCcc--cEEEc
Q 044579 598 LIELRLPYSKVEQIWEGKKEASKLKSIDLCHSQHLIR-MP-DLSEIPNLERTNFFNCTNLVLVPSSIQNFNNL--SMLCF 673 (1103)
Q Consensus 598 L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~-~p-~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L--~~L~L 673 (1103)
|++|+|++|+++.+|.. .+++|++|+|++|.+... +| .+.++++|++|++++|.... ..+..+++| +.|++
T Consensus 102 L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~L 176 (562)
T 3a79_B 102 LEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILL 176 (562)
T ss_dssp CCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEEEE
T ss_pred CCEEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeEEEe
Confidence 99999999999999987 899999999999987653 33 48999999999999976543 245556666 99999
Q ss_pred cCCCC--CcccCCCC---------------------------CCCCCcEEEccCCcC-----------CCcC--------
Q 044579 674 RGCES--LRSFPRDI---------------------------HFVSPVTIDFSFCVN-----------LTEF-------- 705 (1103)
Q Consensus 674 ~~~~~--l~~lp~~~---------------------------~l~~L~~L~l~~c~~-----------l~~~-------- 705 (1103)
++|.. ....|..+ .+.+|+.++++++.. +...
T Consensus 177 ~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L 256 (562)
T 3a79_B 177 DLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTL 256 (562)
T ss_dssp EESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEE
T ss_pred ecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEe
Confidence 99866 33333332 234566666665420 0000
Q ss_pred -------------CC--cCCCccEEecCCccce-ecCccc-----cCC--------------------------CCCCEE
Q 044579 706 -------------PK--ISGKITELNLCDTAIE-EVPSSV-----ECL--------------------------TNLKEL 738 (1103)
Q Consensus 706 -------------~~--~~~~L~~L~L~~~~i~-~lp~~~-----~~l--------------------------~~L~~L 738 (1103)
+. ...+|++|++++|.+. .+|..+ .++ .+|+.|
T Consensus 257 ~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L 336 (562)
T 3a79_B 257 QHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKML 336 (562)
T ss_dssp EEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEE
T ss_pred cCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEE
Confidence 00 1127889999999887 788765 333 347777
Q ss_pred ecCCCcccccccccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCC-CCcccCCCCCCCEEeC
Q 044579 739 YLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLP-HSIDFCCLSSLQWLDL 817 (1103)
Q Consensus 739 ~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp-~~~~~~~l~~L~~L~L 817 (1103)
++++|.+.... ....+++|++|++++|..... .|..+.++++|+.|+|++|.+.+ ++ .+..+..+++|+.|+|
T Consensus 337 ~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~~~l~~L~~L~l 410 (562)
T 3a79_B 337 SISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDS---VFQGCSTLKRLQTLILQRNGLKN-FFKVALMTKNMSSLETLDV 410 (562)
T ss_dssp EEESSCCCCCC--CCSSCCCCCEEECCSSCCCTT---TTTTCCSCSSCCEEECCSSCCCB-TTHHHHTTTTCTTCCEEEC
T ss_pred EccCCCccccc--CccCCCCceEEECCCCccccc---hhhhhcccCCCCEEECCCCCcCC-cccchhhhcCCCCCCEEEC
Confidence 77777653221 126899999999999865543 78889999999999999998654 32 1345778999999999
Q ss_pred CCCCccc-cCcc-ccCCCCCCEEeccCCcCCcccCccc-cccccceecccccccccCCCCc---hhhhhhhcccCCCCCC
Q 044579 818 SGNNFES-LPSS-IKQLSQLRKLDLSNCNMLLSLPELP-LFLEDLEARNCKRLQFLPEIPS---CLEELDASMLEKPPKT 891 (1103)
Q Consensus 818 s~n~l~~-lp~~-i~~l~~L~~L~L~~n~~l~~lp~~~-~~L~~L~~~~c~~l~~~~~~p~---~l~~L~~~~~~~~~~~ 891 (1103)
++|.++. +|.. +..+++|+.|+|++|++.+.+|..+ .+|+.|++. +|++. .+|. .+.+|..+.+++|...
T Consensus 411 ~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~---~N~l~-~ip~~~~~l~~L~~L~L~~N~l~ 486 (562)
T 3a79_B 411 SLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLH---NNRIM-SIPKDVTHLQALQELNVASNQLK 486 (562)
T ss_dssp TTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECC---SSCCC-CCCTTTTSSCCCSEEECCSSCCC
T ss_pred CCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECC---CCcCc-ccChhhcCCCCCCEEECCCCCCC
Confidence 9999997 8865 7889999999999999988888765 456655554 44443 4444 3456777778888766
Q ss_pred CCCccchhcccccceeeeccc
Q 044579 892 SHVDEFWTEEMLSIKFKFTNC 912 (1103)
Q Consensus 892 ~~~~~~~~~~~~~~~~~~~~C 912 (1103)
...............+.+.++
T Consensus 487 ~l~~~~~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 487 SVPDGVFDRLTSLQYIWLHDN 507 (562)
T ss_dssp CCCTTSTTTCTTCCCEECCSC
T ss_pred CCCHHHHhcCCCCCEEEecCC
Confidence 432221222223345666654
No 28
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=1.4e-25 Score=280.15 Aligned_cols=338 Identities=21% Similarity=0.187 Sum_probs=237.8
Q ss_pred cccCCCCcceeechHhhhcCcccceEEEecCCCCCccccCcceecCCCcccCCCceEEEEEcCCCCCCCCCc-c-ccccc
Q 044579 521 FLDLSKTKDIHLSSQAFANMSNLRLLKFYMPERGGVPIMSSKVHLDQGLEDLPEKLRYLHWHGYPLKTLPFD-F-ELENL 598 (1103)
Q Consensus 521 ~L~l~~~~~~~~~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~l~~L 598 (1103)
.|+++++....+.+..|.++++|++|++++|.+.+. .+..+..++ +|++|++++|.++.+|.. + .+++|
T Consensus 29 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--------~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L 99 (680)
T 1ziw_A 29 VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL--------EPELCQKLP-MLKVLNLQHNELSQLSDKTFAFCTNL 99 (680)
T ss_dssp EEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCC--------CTTHHHHCT-TCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred EEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCcc--------CHHHHhccc-CcCEEECCCCccCccChhhhccCCCC
Confidence 578888888888888999999999999998866421 234455565 899999999999999974 4 79999
Q ss_pred cccccccccccccc-cccccCCcceEecCCCCCCCccCCC-CCCCCCccEEEecCCCCCCccccccc--CCCcccEEEcc
Q 044579 599 IELRLPYSKVEQIW-EGKKEASKLKSIDLCHSQHLIRMPD-LSEIPNLERTNFFNCTNLVLVPSSIQ--NFNNLSMLCFR 674 (1103)
Q Consensus 599 ~~L~L~~n~i~~l~-~~~~~l~~L~~L~L~~~~~~~~~p~-l~~l~~L~~L~L~~~~~l~~~~~~i~--~l~~L~~L~L~ 674 (1103)
++|+|++|+++.++ ..+.++++|++|+|++|.+....|. +..+++|++|++++|......+..+. .+++|+.|+++
T Consensus 100 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~ 179 (680)
T 1ziw_A 100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS 179 (680)
T ss_dssp SEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECT
T ss_pred CEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECC
Confidence 99999999999887 5689999999999999987766664 78899999999999865554444443 56899999999
Q ss_pred CCCCCcccCCCC-C---------------------------CCCCcEEEccCCcCCCcCCCcC-----CCccEEecCCcc
Q 044579 675 GCESLRSFPRDI-H---------------------------FVSPVTIDFSFCVNLTEFPKIS-----GKITELNLCDTA 721 (1103)
Q Consensus 675 ~~~~l~~lp~~~-~---------------------------l~~L~~L~l~~c~~l~~~~~~~-----~~L~~L~L~~~~ 721 (1103)
+|......|..+ . .++|+.|++++|......|..+ .+|+.|++++|.
T Consensus 180 ~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~ 259 (680)
T 1ziw_A 180 SNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259 (680)
T ss_dssp TCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSC
T ss_pred CCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCC
Confidence 975443333322 1 2567778887765444444333 348899999999
Q ss_pred ceecC-ccccCCCCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccc--cCCc----cccCCCCCCeeeccCC
Q 044579 722 IEEVP-SSVECLTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETIT--ELPS----SFANLEGLEKLVLVGC 794 (1103)
Q Consensus 722 i~~lp-~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~--~lp~----~~~~l~~L~~L~L~~~ 794 (1103)
+..++ ..++.+++|+.|+|++|.+.+..|..+.++++|+.|++++|.....+. .+|. .+..+++|++|++++|
T Consensus 260 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n 339 (680)
T 1ziw_A 260 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN 339 (680)
T ss_dssp CCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSC
T ss_pred cCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCC
Confidence 88765 568889999999999998888888888888888888888764332111 2332 5667777777777777
Q ss_pred CCCCCCCCCcccCCCCCCCEEeCCCC----------------------------Ccccc-CccccCCCCCCEEeccCCcC
Q 044579 795 SKLNKLPHSIDFCCLSSLQWLDLSGN----------------------------NFESL-PSSIKQLSQLRKLDLSNCNM 845 (1103)
Q Consensus 795 ~~~~~lp~~~~~~~l~~L~~L~Ls~n----------------------------~l~~l-p~~i~~l~~L~~L~L~~n~~ 845 (1103)
.+.+.. +..+..+++|++|++++| +++.+ |..+..+++|+.|+|++|++
T Consensus 340 ~l~~~~--~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 417 (680)
T 1ziw_A 340 DIPGIK--SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEI 417 (680)
T ss_dssp CBCCCC--TTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ccCCCC--hhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcC
Confidence 655433 233455555555555554 44433 34455566666666666665
Q ss_pred CcccC-ccccccccceecccccccc
Q 044579 846 LLSLP-ELPLFLEDLEARNCKRLQF 869 (1103)
Q Consensus 846 l~~lp-~~~~~L~~L~~~~c~~l~~ 869 (1103)
.+.+| ..+..+..|..++++++++
T Consensus 418 ~~~~~~~~~~~l~~L~~L~Ls~n~l 442 (680)
T 1ziw_A 418 GQELTGQEWRGLENIFEIYLSYNKY 442 (680)
T ss_dssp EEECCSGGGTTCTTCCEEECCSCSE
T ss_pred ccccCcccccCcccccEEecCCCCc
Confidence 55554 3344444444444554443
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=1.8e-25 Score=263.43 Aligned_cols=294 Identities=16% Similarity=0.148 Sum_probs=229.5
Q ss_pred cccCCCCcceeechHhhhcCcccceEEEecCCCCCccccCcceecCCCcccCCCceEEEEEcCCCCCCCCCccccccccc
Q 044579 521 FLDLSKTKDIHLSSQAFANMSNLRLLKFYMPERGGVPIMSSKVHLDQGLEDLPEKLRYLHWHGYPLKTLPFDFELENLIE 600 (1103)
Q Consensus 521 ~L~l~~~~~~~~~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~ 600 (1103)
.++++++....++ .|.++++|++|++++|.+.+. + +..++ +|++|++++|.++.+| ...+++|++
T Consensus 46 ~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~---------~--~~~l~-~L~~L~Ls~N~l~~~~-~~~l~~L~~ 110 (457)
T 3bz5_A 46 SLDCHNSSITDMT--GIEKLTGLTKLICTSNNITTL---------D--LSQNT-NLTYLACDSNKLTNLD-VTPLTKLTY 110 (457)
T ss_dssp EEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSCC---------C--CTTCT-TCSEEECCSSCCSCCC-CTTCTTCCE
T ss_pred EEEccCCCcccCh--hhcccCCCCEEEccCCcCCeE---------c--cccCC-CCCEEECcCCCCceee-cCCCCcCCE
Confidence 5677777666664 689999999999999876532 2 44454 8999999999999986 337899999
Q ss_pred cccccccccccccccccCCcceEecCCCCCCCccCCCCCCCCCccEEEecCCCCCCcccccccCCCcccEEEccCCCCCc
Q 044579 601 LRLPYSKVEQIWEGKKEASKLKSIDLCHSQHLIRMPDLSEIPNLERTNFFNCTNLVLVPSSIQNFNNLSMLCFRGCESLR 680 (1103)
Q Consensus 601 L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~~~~l~ 680 (1103)
|++++|+++.++ +..+++|++|++++|.+.. + +++.+++|++|++++|..+..+ .++.+++|+.|++++| .++
T Consensus 111 L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~-l-~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n-~l~ 183 (457)
T 3bz5_A 111 LNCDTNKLTKLD--VSQNPLLTYLNCARNTLTE-I-DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN-KIT 183 (457)
T ss_dssp EECCSSCCSCCC--CTTCTTCCEEECTTSCCSC-C-CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS-CCC
T ss_pred EECCCCcCCeec--CCCCCcCCEEECCCCccce-e-ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC-ccc
Confidence 999999999886 8889999999999998655 3 4889999999999998777777 4888999999999996 455
Q ss_pred ccCCCCCCCCCcEEEccCCcCCCcCC-CcCCCccEEecCCccceecCccccCCCCCCEEecCCCcccccccccccCCC--
Q 044579 681 SFPRDIHFVSPVTIDFSFCVNLTEFP-KISGKITELNLCDTAIEEVPSSVECLTNLKELYLSRCSTLNRLSTSICKLK-- 757 (1103)
Q Consensus 681 ~lp~~~~l~~L~~L~l~~c~~l~~~~-~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~-- 757 (1103)
.+| ...+++|+.|++++|. +..++ ....+|+.|++++|.++.+| +..+++|+.|++++|.+.+..+..+.+|+
T Consensus 184 ~l~-l~~l~~L~~L~l~~N~-l~~~~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L 259 (457)
T 3bz5_A 184 ELD-VSQNKLLNRLNCDTNN-ITKLDLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTL 259 (457)
T ss_dssp CCC-CTTCTTCCEEECCSSC-CSCCCCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEE
T ss_pred eec-cccCCCCCEEECcCCc-CCeeccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEE
Confidence 566 3478899999999875 33332 34567899999999999988 88899999999999988775444343333
Q ss_pred -----CCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCC------CcccCCCCCCCEEeCCCCCccccC
Q 044579 758 -----SLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPH------SIDFCCLSSLQWLDLSGNNFESLP 826 (1103)
Q Consensus 758 -----~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~------~~~~~~l~~L~~L~Ls~n~l~~lp 826 (1103)
+|+.|++++|..... +| ++.+++|+.|+|++|..++.+|. ...+..+++|+.|++++|+++.++
T Consensus 260 ~l~~n~L~~L~l~~n~~~~~---~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~ 334 (457)
T 3bz5_A 260 HCIQTDLLEIDLTHNTQLIY---FQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD 334 (457)
T ss_dssp ECTTCCCSCCCCTTCTTCCE---EE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC
T ss_pred eccCCCCCEEECCCCccCCc---cc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccc
Confidence 445555555543333 44 46789999999999987765542 123567789999999999999985
Q ss_pred ccccCCCCCCEEeccCCcCCc
Q 044579 827 SSIKQLSQLRKLDLSNCNMLL 847 (1103)
Q Consensus 827 ~~i~~l~~L~~L~L~~n~~l~ 847 (1103)
+..+++|+.|++++|++.+
T Consensus 335 --l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 335 --VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp --CTTCTTCSEEECCSSCCCB
T ss_pred --cccCCcCcEEECCCCCCCC
Confidence 8899999999999999765
No 30
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=1.5e-25 Score=255.70 Aligned_cols=303 Identities=16% Similarity=0.198 Sum_probs=221.5
Q ss_pred hhcCcccceEEEecCCCCCccccCcceecCCCcccCCCceEEEEEcCCCCCCCCCccccccccccccccccccccccccc
Q 044579 537 FANMSNLRLLKFYMPERGGVPIMSSKVHLDQGLEDLPEKLRYLHWHGYPLKTLPFDFELENLIELRLPYSKVEQIWEGKK 616 (1103)
Q Consensus 537 f~~l~~Lr~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~ 616 (1103)
+..+++|+.|+++++.+.. ++ ++..++ +|++|++++|.++.+|....+++|++|+|++|.++.++ .+.
T Consensus 40 ~~~l~~L~~L~l~~~~i~~---------~~-~~~~~~-~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~ 107 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS---------IQ-GIEYLT-NLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS-ALQ 107 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC---------CT-TGGGCT-TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGT
T ss_pred chhcccccEEEEeCCcccc---------ch-hhhhcC-CccEEEccCCccccchhhhcCCcCCEEEccCCcccCch-HHc
Confidence 4577888888888775532 22 344554 78888888888888877447888888888888888775 577
Q ss_pred cCCcceEecCCCCCCCccCCCCCCCCCccEEEecCCCCCCcccccccCCCcccEEEccCCCCCcccCCCCCCCCCcEEEc
Q 044579 617 EASKLKSIDLCHSQHLIRMPDLSEIPNLERTNFFNCTNLVLVPSSIQNFNNLSMLCFRGCESLRSFPRDIHFVSPVTIDF 696 (1103)
Q Consensus 617 ~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l 696 (1103)
.+++|++|+|++|.+. .++.+..+++|++|++++|.....++. +..+++|++|++++|. +..++....+++|+.|++
T Consensus 108 ~l~~L~~L~l~~n~i~-~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~l 184 (347)
T 4fmz_A 108 NLTNLRELYLNEDNIS-DISPLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESK-VKDVTPIANLTDLYSLSL 184 (347)
T ss_dssp TCTTCSEEECTTSCCC-CCGGGTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSC-CCCCGGGGGCTTCSEEEC
T ss_pred CCCcCCEEECcCCccc-CchhhccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCC-cCCchhhccCCCCCEEEc
Confidence 8888888888888754 444588888888888888877666554 7888888888888865 344444347788888888
Q ss_pred cCCcCCCcCCC--cCCCccEEecCCccceecCccccCCCCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccc
Q 044579 697 SFCVNLTEFPK--ISGKITELNLCDTAIEEVPSSVECLTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETIT 774 (1103)
Q Consensus 697 ~~c~~l~~~~~--~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~ 774 (1103)
++|. +..++. ...+|+.|++++|.+..++. +..+++|+.|++++|.+....+ +..+++|++|++++|...
T Consensus 185 ~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~---- 256 (347)
T 4fmz_A 185 NYNQ-IEDISPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQIS---- 256 (347)
T ss_dssp TTSC-CCCCGGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC----
T ss_pred cCCc-ccccccccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccC----
Confidence 8864 344442 34678888888888887766 7888899999999887665443 788889999999887432
Q ss_pred cCCccccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCcccc-CccccCCCCCCEEeccCCcCCcccCccc
Q 044579 775 ELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESL-PSSIKQLSQLRKLDLSNCNMLLSLPELP 853 (1103)
Q Consensus 775 ~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~n~~l~~lp~~~ 853 (1103)
.+ ..+..+++|+.|++++|.+.. ++ .+..+++|+.|++++|.++.. |..+..+++|+.|+|++|++.+..| +
T Consensus 257 ~~-~~~~~l~~L~~L~l~~n~l~~-~~---~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~ 329 (347)
T 4fmz_A 257 DI-NAVKDLTKLKMLNVGSNQISD-IS---VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--L 329 (347)
T ss_dssp CC-GGGTTCTTCCEEECCSSCCCC-CG---GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--G
T ss_pred CC-hhHhcCCCcCEEEccCCccCC-Ch---hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--h
Confidence 23 457788899999998887543 32 356788999999999988844 4667888999999999998776655 4
Q ss_pred cccccceecccccccc
Q 044579 854 LFLEDLEARNCKRLQF 869 (1103)
Q Consensus 854 ~~L~~L~~~~c~~l~~ 869 (1103)
..+..|...+..+|.+
T Consensus 330 ~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 330 ASLSKMDSADFANQVI 345 (347)
T ss_dssp GGCTTCSEESSSCC--
T ss_pred hhhhccceeehhhhcc
Confidence 5555555555555543
No 31
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=2.1e-25 Score=258.66 Aligned_cols=258 Identities=17% Similarity=0.172 Sum_probs=124.4
Q ss_pred ceEEEEEcCCCCCCCCC-cc-cccccccccccccccccccc-ccccCCcceEecCCCCCCCccCCC-CCCCCCccEEEec
Q 044579 575 KLRYLHWHGYPLKTLPF-DF-ELENLIELRLPYSKVEQIWE-GKKEASKLKSIDLCHSQHLIRMPD-LSEIPNLERTNFF 650 (1103)
Q Consensus 575 ~Lr~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~n~i~~l~~-~~~~l~~L~~L~L~~~~~~~~~p~-l~~l~~L~~L~L~ 650 (1103)
+|++|++++|.++.+|. .+ .+++|++|+|++|.++.++. .+..+++|++|+|++|.+....+. +..+++|++|+++
T Consensus 70 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~ 149 (390)
T 3o6n_A 70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS 149 (390)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECC
Confidence 45555555555544443 22 44555555555555554432 244555555555555543322222 3445555555555
Q ss_pred CCCCCCcccccccCCCcccEEEccCCCCCcccCCCCCCCCCcEEEccCCcCCCcCCCcCCCccEEecCCccceecCcccc
Q 044579 651 NCTNLVLVPSSIQNFNNLSMLCFRGCESLRSFPRDIHFVSPVTIDFSFCVNLTEFPKISGKITELNLCDTAIEEVPSSVE 730 (1103)
Q Consensus 651 ~~~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~ 730 (1103)
+|......|..+..+++|+.|++++|. +..++ .-.+++|+.|+++++. +..++ ...+|++|++++|.+..+|...
T Consensus 150 ~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~l~~L~~L~l~~n~-l~~~~-~~~~L~~L~l~~n~l~~~~~~~- 224 (390)
T 3o6n_A 150 NNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD-LSLIPSLFHANVSYNL-LSTLA-IPIAVEELDASHNSINVVRGPV- 224 (390)
T ss_dssp SSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCC-GGGCTTCSEEECCSSC-CSEEE-CCSSCSEEECCSSCCCEEECCC-
T ss_pred CCccCccChhhccCCCCCCEEECCCCc-CCccc-cccccccceeeccccc-ccccC-CCCcceEEECCCCeeeeccccc-
Confidence 544333333445555555555555532 22221 1134455555555432 22221 1234555555555555554432
Q ss_pred CCCCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcccCCCC
Q 044579 731 CLTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLS 810 (1103)
Q Consensus 731 ~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~ 810 (1103)
+++|+.|++++|.+.+. ..+..+++|++|+|++|..... .|..+..+++|+.|+|++|.+.. +| ..+..++
T Consensus 225 -~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~-~~--~~~~~l~ 295 (390)
T 3o6n_A 225 -NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKI---MYHPFVKMQRLERLYISNNRLVA-LN--LYGQPIP 295 (390)
T ss_dssp -CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEE---ESGGGTTCSSCCEEECCSSCCCE-EE--CSSSCCT
T ss_pred -cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCc---ChhHccccccCCEEECCCCcCcc-cC--cccCCCC
Confidence 34566666665554432 3455556666666665532222 34555555666666666555332 21 2223455
Q ss_pred CCCEEeCCCCCccccCccccCCCCCCEEeccCCcCC
Q 044579 811 SLQWLDLSGNNFESLPSSIKQLSQLRKLDLSNCNML 846 (1103)
Q Consensus 811 ~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~l 846 (1103)
+|+.|+|++|.++.+|..+..+++|+.|+|++|++.
T Consensus 296 ~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~ 331 (390)
T 3o6n_A 296 TLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV 331 (390)
T ss_dssp TCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCC
T ss_pred CCCEEECCCCcceecCccccccCcCCEEECCCCccc
Confidence 666666666666655555555566666666666543
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=2.3e-25 Score=264.64 Aligned_cols=319 Identities=19% Similarity=0.213 Sum_probs=226.7
Q ss_pred ccCCCCcceeechHhhhcCcccceEEEecCCCCCccccCcceecCCCcccCCCceEEEEEcCCCCCCCCCcccccccccc
Q 044579 522 LDLSKTKDIHLSSQAFANMSNLRLLKFYMPERGGVPIMSSKVHLDQGLEDLPEKLRYLHWHGYPLKTLPFDFELENLIEL 601 (1103)
Q Consensus 522 L~l~~~~~~~~~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L 601 (1103)
+++.++....++ .|..+++|++|++++|.+.+. +. +..++ +|++|++++|.+..++....+++|++|
T Consensus 51 L~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l~~~---------~~-~~~l~-~L~~L~l~~n~l~~~~~~~~l~~L~~L 117 (466)
T 1o6v_A 51 LQADRLGIKSID--GVEYLNNLTQINFSNNQLTDI---------TP-LKNLT-KLVDILMNNNQIADITPLANLTNLTGL 117 (466)
T ss_dssp EECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCC---------GG-GTTCT-TCCEEECCSSCCCCCGGGTTCTTCCEE
T ss_pred EecCCCCCccCc--chhhhcCCCEEECCCCccCCc---------hh-hhccc-cCCEEECCCCccccChhhcCCCCCCEE
Confidence 444555444444 377888888888888865432 22 44554 788888888888888774478888888
Q ss_pred ccccccccccccccccCCcceEecCCCCCCCccCCCCCCCCCccEEEecCCCCCCcccccccCCCcccEEEccCCCCCcc
Q 044579 602 RLPYSKVEQIWEGKKEASKLKSIDLCHSQHLIRMPDLSEIPNLERTNFFNCTNLVLVPSSIQNFNNLSMLCFRGCESLRS 681 (1103)
Q Consensus 602 ~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~~~~l~~ 681 (1103)
+|++|.++.++. +..+++|++|++++|.+ ..++.+..+++|++|++.+ .+..++. +.++++|+.|++++|. +..
T Consensus 118 ~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~l~~--~~~~~~~-~~~l~~L~~L~l~~n~-l~~ 191 (466)
T 1o6v_A 118 TLFNNQITDIDP-LKNLTNLNRLELSSNTI-SDISALSGLTSLQQLSFGN--QVTDLKP-LANLTTLERLDISSNK-VSD 191 (466)
T ss_dssp ECCSSCCCCCGG-GTTCTTCSEEEEEEEEE-CCCGGGTTCTTCSEEEEEE--SCCCCGG-GTTCTTCCEEECCSSC-CCC
T ss_pred ECCCCCCCCChH-HcCCCCCCEEECCCCcc-CCChhhccCCcccEeecCC--cccCchh-hccCCCCCEEECcCCc-CCC
Confidence 888888888765 78888888888888874 3456688888888888863 2333333 7888888888888865 455
Q ss_pred cCCCCCCCCCcEEEccCCcCCCcCC-CcCCCccEEecCCccceecCccccCCCCCCEEecCCCcccccccccccCCCCCc
Q 044579 682 FPRDIHFVSPVTIDFSFCVNLTEFP-KISGKITELNLCDTAIEEVPSSVECLTNLKELYLSRCSTLNRLSTSICKLKSLH 760 (1103)
Q Consensus 682 lp~~~~l~~L~~L~l~~c~~l~~~~-~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~ 760 (1103)
++....+++|+.|++++|......| ..+.+|+.|++++|.+..++ .+..+++|+.|++++|.+.+..| +..+++|+
T Consensus 192 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~ 268 (466)
T 1o6v_A 192 ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP--LSGLTKLT 268 (466)
T ss_dssp CGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCS
T ss_pred ChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh--hhcCCCCC
Confidence 5544477888888888875333222 23567888888888888775 47788888888888887766544 77888888
Q ss_pred EEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCccccCccccCCCCCCEEec
Q 044579 761 ELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESLPSSIKQLSQLRKLDL 840 (1103)
Q Consensus 761 ~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L 840 (1103)
.|++++|... .+|. +..+++|+.|++++|.+.+ ++ .+..+++|+.|+|++|.++.++. +..+++|+.|++
T Consensus 269 ~L~l~~n~l~----~~~~-~~~l~~L~~L~L~~n~l~~-~~---~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l 338 (466)
T 1o6v_A 269 ELKLGANQIS----NISP-LAGLTALTNLELNENQLED-IS---PISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFF 338 (466)
T ss_dssp EEECCSSCCC----CCGG-GTTCTTCSEEECCSSCCSC-CG---GGGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEEC
T ss_pred EEECCCCccC----cccc-ccCCCccCeEEcCCCcccC-ch---hhcCCCCCCEEECcCCcCCCchh-hccCccCCEeEC
Confidence 8888886432 2344 7778888888888887554 32 15677888888888888887664 678888888888
Q ss_pred cCCcCCcccCccccccccceecccccccccCCCC
Q 044579 841 SNCNMLLSLPELPLFLEDLEARNCKRLQFLPEIP 874 (1103)
Q Consensus 841 ~~n~~l~~lp~~~~~L~~L~~~~c~~l~~~~~~p 874 (1103)
++|++.+. + .+..+..|..+++.++++.+..|
T Consensus 339 ~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 339 YNNKVSDV-S-SLANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp CSSCCCCC-G-GGTTCTTCCEEECCSSCCCBCGG
T ss_pred CCCccCCc-h-hhccCCCCCEEeCCCCccCccch
Confidence 88876553 3 35566666666666666655544
No 33
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.93 E-value=6.7e-26 Score=275.76 Aligned_cols=345 Identities=19% Similarity=0.201 Sum_probs=235.8
Q ss_pred cccCCCCcceeechHhhhcCcccceEEEecCCCCCccccCcceecCC-CcccCCCceEEEEEcCCCCCCC--CCcc-ccc
Q 044579 521 FLDLSKTKDIHLSSQAFANMSNLRLLKFYMPERGGVPIMSSKVHLDQ-GLEDLPEKLRYLHWHGYPLKTL--PFDF-ELE 596 (1103)
Q Consensus 521 ~L~l~~~~~~~~~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~l~~-~l~~l~~~Lr~L~l~~~~l~~l--p~~~-~l~ 596 (1103)
.|+++++....+.+.+|.++++|++|++++|.+.+ ++. .+..++ +|++|++++|.++.+ |..+ .++
T Consensus 54 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~---------~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~l~ 123 (549)
T 2z81_A 54 VLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS---------LSSSWFGPLS-SLKYLNLMGNPYQTLGVTSLFPNLT 123 (549)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCS---------CCHHHHTTCT-TCCEEECTTCCCSSSCSSCSCTTCT
T ss_pred EEECCCCCcCccChhhccccccCCEEECCCCccCc---------cCHHHhccCC-CCcEEECCCCcccccchhhhhhccC
Confidence 56777777777777788888888888888776542 222 244444 778888888877744 3444 677
Q ss_pred ccccccccccc-ccccc-cccccCCcceEecCCCCCCCccCCC-CCCCCCccEEEecCCCCCCccccc-ccCCCcccEEE
Q 044579 597 NLIELRLPYSK-VEQIW-EGKKEASKLKSIDLCHSQHLIRMPD-LSEIPNLERTNFFNCTNLVLVPSS-IQNFNNLSMLC 672 (1103)
Q Consensus 597 ~L~~L~L~~n~-i~~l~-~~~~~l~~L~~L~L~~~~~~~~~p~-l~~l~~L~~L~L~~~~~l~~~~~~-i~~l~~L~~L~ 672 (1103)
+|++|++++|. +..++ ..+..+++|++|++++|.+....|. +..+++|++|++++|.. ..+|.. +..+++|++|+
T Consensus 124 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~-~~~~~~~~~~l~~L~~L~ 202 (549)
T 2z81_A 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES-AFLLEIFADILSSVRYLE 202 (549)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS-TTHHHHHHHSTTTBSEEE
T ss_pred CccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc-cccchhhHhhcccccEEE
Confidence 78888887776 55665 4577777788888777776655543 55555555555554432 122211 12233444444
Q ss_pred ccCCCCCcc---------------------------------------------------------cC------------
Q 044579 673 FRGCESLRS---------------------------------------------------------FP------------ 683 (1103)
Q Consensus 673 L~~~~~l~~---------------------------------------------------------lp------------ 683 (1103)
+++|..... ++
T Consensus 203 L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~ 282 (549)
T 2z81_A 203 LRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGK 282 (549)
T ss_dssp EESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTT
T ss_pred ccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcc
Confidence 433321110 00
Q ss_pred ------------CC----------CCCCCCcEEEccCCcCCCcCCC----cCCCccEEecCCcccee-cC---ccccCCC
Q 044579 684 ------------RD----------IHFVSPVTIDFSFCVNLTEFPK----ISGKITELNLCDTAIEE-VP---SSVECLT 733 (1103)
Q Consensus 684 ------------~~----------~~l~~L~~L~l~~c~~l~~~~~----~~~~L~~L~L~~~~i~~-lp---~~~~~l~ 733 (1103)
.. ....+|+.|++++|. +..+|. ...+|+.|++++|.+.. +| ..++.++
T Consensus 283 L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~ 361 (549)
T 2z81_A 283 VETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWP 361 (549)
T ss_dssp CCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSST
T ss_pred cccccccccccchhhhcccchhhhhhcccceEEEeccCc-cccCCHHHHhcCccccEEEccCCccccccccchhhhhccc
Confidence 00 012457777777754 567774 35789999999999985 33 3478899
Q ss_pred CCCEEecCCCccccccc--ccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcccCCCCC
Q 044579 734 NLKELYLSRCSTLNRLS--TSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSS 811 (1103)
Q Consensus 734 ~L~~L~L~~~~~~~~lp--~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~ 811 (1103)
+|+.|+|++|.+.+..+ ..+..+++|++|++++|. +..+|..+..+++|++|++++|.+. .+|.. ..++
T Consensus 362 ~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~----l~~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~----~~~~ 432 (549)
T 2z81_A 362 SLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT----FHPMPDSCQWPEKMRFLNLSSTGIR-VVKTC----IPQT 432 (549)
T ss_dssp TCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCC----CCCCCSCCCCCTTCCEEECTTSCCS-CCCTT----SCTT
T ss_pred cCcEEEccCCcccccccchhhhhcCCCCCEEECCCCC----CccCChhhcccccccEEECCCCCcc-cccch----hcCC
Confidence 99999999998765432 458899999999999974 3358999999999999999999854 45322 1479
Q ss_pred CCEEeCCCCCccccCccccCCCCCCEEeccCCcCCcccCccccccccceecccccccccCCCCchh---hhhhhcccCCC
Q 044579 812 LQWLDLSGNNFESLPSSIKQLSQLRKLDLSNCNMLLSLPELPLFLEDLEARNCKRLQFLPEIPSCL---EELDASMLEKP 888 (1103)
Q Consensus 812 L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~~~~c~~l~~~~~~p~~l---~~L~~~~~~~~ 888 (1103)
|+.|+|++|+++.++ ..+++|+.|+|++|++. .+|. ...+..|..+++++|++.+..|..+ .+|..+.+++|
T Consensus 433 L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 507 (549)
T 2z81_A 433 LEVLDVSNNNLDSFS---LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507 (549)
T ss_dssp CSEEECCSSCCSCCC---CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSS
T ss_pred ceEEECCCCChhhhc---ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCC
Confidence 999999999999876 57899999999999865 7886 3567778888888888887777544 45566667777
Q ss_pred CCC
Q 044579 889 PKT 891 (1103)
Q Consensus 889 ~~~ 891 (1103)
+..
T Consensus 508 ~~~ 510 (549)
T 2z81_A 508 PWD 510 (549)
T ss_dssp CBC
T ss_pred Ccc
Confidence 753
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=4.6e-25 Score=251.62 Aligned_cols=295 Identities=16% Similarity=0.144 Sum_probs=245.8
Q ss_pred ceEEEEEcCCCCCCCCCccccccccccccccccccccccccccCCcceEecCCCCCCCccCCCCCCCCCccEEEecCCCC
Q 044579 575 KLRYLHWHGYPLKTLPFDFELENLIELRLPYSKVEQIWEGKKEASKLKSIDLCHSQHLIRMPDLSEIPNLERTNFFNCTN 654 (1103)
Q Consensus 575 ~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~~~~ 654 (1103)
+|+.|+++++.+..+|....+++|++|++++|+++.++. +..+++|++|+|++|.+ ..++.+..+++|++|++++|..
T Consensus 45 ~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i-~~~~~~~~l~~L~~L~l~~n~i 122 (347)
T 4fmz_A 45 SITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKI-TDISALQNLTNLRELYLNEDNI 122 (347)
T ss_dssp TCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-CCCGGGTTCTTCSEEECTTSCC
T ss_pred cccEEEEeCCccccchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcc-cCchHHcCCCcCCEEECcCCcc
Confidence 899999999999999976689999999999999999887 89999999999999974 4567899999999999999764
Q ss_pred CCcccccccCCCcccEEEccCCCCCcccCCCCCCCCCcEEEccCCcCCCcCC--CcCCCccEEecCCccceecCccccCC
Q 044579 655 LVLVPSSIQNFNNLSMLCFRGCESLRSFPRDIHFVSPVTIDFSFCVNLTEFP--KISGKITELNLCDTAIEEVPSSVECL 732 (1103)
Q Consensus 655 l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~~--~~~~~L~~L~L~~~~i~~lp~~~~~l 732 (1103)
..++. +..+++|+.|++++|..+..++....+++|++|++++|.. ..++ ....+|+.|++++|.+..++. +..+
T Consensus 123 -~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l 198 (347)
T 4fmz_A 123 -SDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKV-KDVTPIANLTDLYSLSLNYNQIEDISP-LASL 198 (347)
T ss_dssp -CCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCC-CCCGGGGGCTTCSEEECTTSCCCCCGG-GGGC
T ss_pred -cCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCc-CCchhhccCCCCCEEEccCCccccccc-ccCC
Confidence 45554 8999999999999998888877756899999999999753 3333 245689999999999998887 8899
Q ss_pred CCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcccCCCCCC
Q 044579 733 TNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSL 812 (1103)
Q Consensus 733 ~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L 812 (1103)
++|+.|++++|.+.+..+ +..+++|++|++++|... .++. +..+++|++|++++|.+.. + ..+..+++|
T Consensus 199 ~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~----~~~~-~~~l~~L~~L~l~~n~l~~-~---~~~~~l~~L 267 (347)
T 4fmz_A 199 TSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKIT----DLSP-LANLSQLTWLEIGTNQISD-I---NAVKDLTKL 267 (347)
T ss_dssp TTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC----CCGG-GTTCTTCCEEECCSSCCCC-C---GGGTTCTTC
T ss_pred CccceeecccCCCCCCch--hhcCCcCCEEEccCCccC----CCcc-hhcCCCCCEEECCCCccCC-C---hhHhcCCCc
Confidence 999999999998776544 889999999999997533 3454 8899999999999997654 3 246789999
Q ss_pred CEEeCCCCCccccCccccCCCCCCEEeccCCcCCcccCccccccccceecccccccccCCCC-chhhhhhhcccCC
Q 044579 813 QWLDLSGNNFESLPSSIKQLSQLRKLDLSNCNMLLSLPELPLFLEDLEARNCKRLQFLPEIP-SCLEELDASMLEK 887 (1103)
Q Consensus 813 ~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~~~~c~~l~~~~~~p-~~l~~L~~~~~~~ 887 (1103)
+.|++++|.++.+| .+..+++|+.|+|++|++.+..|..+..+..|..+++.++.+.+..| ..+.+|..+.+++
T Consensus 268 ~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~ 342 (347)
T 4fmz_A 268 KMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFAN 342 (347)
T ss_dssp CEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGGGGGCTTCSEESSSC
T ss_pred CEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccChhhhhccceeehhh
Confidence 99999999999986 58899999999999999988888877777778777888887766544 2233444333333
No 35
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.93 E-value=1.1e-24 Score=277.56 Aligned_cols=325 Identities=16% Similarity=0.113 Sum_probs=253.7
Q ss_pred ccccccCCCCcceeechHhhhcCcccceEEEecCCCCCccccCcceecCCCcccCCCceEEEEEcCCC-CCCC-CCcc-c
Q 044579 518 EGIFLDLSKTKDIHLSSQAFANMSNLRLLKFYMPERGGVPIMSSKVHLDQGLEDLPEKLRYLHWHGYP-LKTL-PFDF-E 594 (1103)
Q Consensus 518 ~~i~L~l~~~~~~~~~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~-l~~l-p~~~-~ 594 (1103)
.+...|++......++. -.++|+.|++++|.+.. ..+..+..++ +|++|++++|. +..+ |..+ +
T Consensus 5 ~~~~~dcs~~~L~~vP~----lp~~l~~LdLs~N~i~~--------i~~~~~~~l~-~L~~LdLs~n~~~~~i~~~~f~~ 71 (844)
T 3j0a_A 5 DGRIAFYRFCNLTQVPQ----VLNTTERLLLSFNYIRT--------VTASSFPFLE-QLQLLELGSQYTPLTIDKEAFRN 71 (844)
T ss_dssp TTEEEEESCCCSSCCCS----SCTTCCEEEEESCCCCE--------ECSSSCSSCC-SCSEEEECTTCCCCEECTTTTSS
T ss_pred eceEEEccCCCCCCCCC----CCCCcCEEECCCCcCCc--------cChhHCcccc-cCeEEeCCCCCCccccCHHHhcC
Confidence 34556777666666664 45799999999997632 2355667776 89999999994 5566 5555 8
Q ss_pred ccccccccccccccccc-ccccccCCcceEecCCCCCCCccCCC---CCCCCCccEEEecCCCCCCccc-ccccCCCccc
Q 044579 595 LENLIELRLPYSKVEQI-WEGKKEASKLKSIDLCHSQHLIRMPD---LSEIPNLERTNFFNCTNLVLVP-SSIQNFNNLS 669 (1103)
Q Consensus 595 l~~L~~L~L~~n~i~~l-~~~~~~l~~L~~L~L~~~~~~~~~p~---l~~l~~L~~L~L~~~~~l~~~~-~~i~~l~~L~ 669 (1103)
+++|++|+|++|.+..+ |..+.++++|++|+|++|.+...+|. +.++++|++|+|++|......+ ..++++++|+
T Consensus 72 L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~ 151 (844)
T 3j0a_A 72 LPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLK 151 (844)
T ss_dssp CTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCC
T ss_pred CCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCC
Confidence 99999999999999977 77899999999999999998765554 8999999999999987766544 5799999999
Q ss_pred EEEccCCCCCcccCCCC-CC--CCCcEEEccCCcCCCcCCCcCC---------CccEEecCCccce-ecCccc-------
Q 044579 670 MLCFRGCESLRSFPRDI-HF--VSPVTIDFSFCVNLTEFPKISG---------KITELNLCDTAIE-EVPSSV------- 729 (1103)
Q Consensus 670 ~L~L~~~~~l~~lp~~~-~l--~~L~~L~l~~c~~l~~~~~~~~---------~L~~L~L~~~~i~-~lp~~~------- 729 (1103)
+|+|++|......|..+ .+ ++|+.|++++|......|...+ +|+.|++++|.+. .+|..+
T Consensus 152 ~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~ 231 (844)
T 3j0a_A 152 SIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKS 231 (844)
T ss_dssp EEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSC
T ss_pred EEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcc
Confidence 99999987655555555 33 8999999999876655544322 3899999998654 222221
Q ss_pred -----------------------------cC--CCCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccccCCc
Q 044579 730 -----------------------------EC--LTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELPS 778 (1103)
Q Consensus 730 -----------------------------~~--l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~ 778 (1103)
.. .++|+.|+|++|.+.+..|..+..+++|+.|+|++|..... .|.
T Consensus 232 ~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~---~~~ 308 (844)
T 3j0a_A 232 QAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKI---ADE 308 (844)
T ss_dssp CBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEE---CTT
T ss_pred cccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCC---ChH
Confidence 11 26899999999999888889999999999999999864433 567
Q ss_pred cccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCccccCc-cccCCCCCCEEeccCCcCCcccCccccccc
Q 044579 779 SFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESLPS-SIKQLSQLRKLDLSNCNMLLSLPELPLFLE 857 (1103)
Q Consensus 779 ~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~n~~l~~lp~~~~~L~ 857 (1103)
.+.++++|++|+|++|.+.... +..+..+++|+.|+|++|.++.++. .+..+++|+.|+|++|.+.+ ++. +++|+
T Consensus 309 ~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~-~~~L~ 384 (844)
T 3j0a_A 309 AFYGLDNLQVLNLSYNLLGELY--SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-IHF-IPSIP 384 (844)
T ss_dssp TTTTCSSCCEEEEESCCCSCCC--SCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-CSS-CCSCS
T ss_pred HhcCCCCCCEEECCCCCCCccC--HHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-ccC-CCCcc
Confidence 8899999999999999876554 4567889999999999999998764 57889999999999998653 333 33444
Q ss_pred cceec
Q 044579 858 DLEAR 862 (1103)
Q Consensus 858 ~L~~~ 862 (1103)
.|.+.
T Consensus 385 ~L~l~ 389 (844)
T 3j0a_A 385 DIFLS 389 (844)
T ss_dssp EEEEE
T ss_pred hhccC
Confidence 44443
No 36
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=3.8e-25 Score=262.80 Aligned_cols=316 Identities=17% Similarity=0.196 Sum_probs=257.1
Q ss_pred cccCCCCcceeechHhhhcCcccceEEEecCCCCCccccCcceecCCCcccCCCceEEEEEcCCCCCCCCCccccccccc
Q 044579 521 FLDLSKTKDIHLSSQAFANMSNLRLLKFYMPERGGVPIMSSKVHLDQGLEDLPEKLRYLHWHGYPLKTLPFDFELENLIE 600 (1103)
Q Consensus 521 ~L~l~~~~~~~~~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~ 600 (1103)
.|+++++....+.+ |.++++|++|++++|.+.+. +. +..++ +|++|++++|.++.+|....+++|++
T Consensus 72 ~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~---------~~-~~~l~-~L~~L~L~~n~l~~~~~~~~l~~L~~ 138 (466)
T 1o6v_A 72 QINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI---------TP-LANLT-NLTGLTLFNNQITDIDPLKNLTNLNR 138 (466)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC---------GG-GTTCT-TCCEEECCSSCCCCCGGGTTCTTCSE
T ss_pred EEECCCCccCCchh--hhccccCCEEECCCCccccC---------hh-hcCCC-CCCEEECCCCCCCCChHHcCCCCCCE
Confidence 57888887777765 99999999999999876432 22 55555 89999999999999988558999999
Q ss_pred cccccccccccccccccCCcceEecCCCCCCCccCCCCCCCCCccEEEecCCCCCCcccccccCCCcccEEEccCCCCCc
Q 044579 601 LRLPYSKVEQIWEGKKEASKLKSIDLCHSQHLIRMPDLSEIPNLERTNFFNCTNLVLVPSSIQNFNNLSMLCFRGCESLR 680 (1103)
Q Consensus 601 L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~~~~l~ 680 (1103)
|++++|.+..++ .+..+++|+.|+++++ ...++.+..+++|++|++++|. +..++ .+..+++|+.|++++|....
T Consensus 139 L~l~~n~l~~~~-~~~~l~~L~~L~l~~~--~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~l~~ 213 (466)
T 1o6v_A 139 LELSSNTISDIS-ALSGLTSLQQLSFGNQ--VTDLKPLANLTTLERLDISSNK-VSDIS-VLAKLTNLESLIATNNQISD 213 (466)
T ss_dssp EEEEEEEECCCG-GGTTCTTCSEEEEEES--CCCCGGGTTCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCCCC
T ss_pred EECCCCccCCCh-hhccCCcccEeecCCc--ccCchhhccCCCCCEEECcCCc-CCCCh-hhccCCCCCEEEecCCcccc
Confidence 999999999886 4889999999999743 3445569999999999999986 44444 48899999999999976443
Q ss_pred ccCCCCCCCCCcEEEccCCcCCCcCCC--cCCCccEEecCCccceecCccccCCCCCCEEecCCCcccccccccccCCCC
Q 044579 681 SFPRDIHFVSPVTIDFSFCVNLTEFPK--ISGKITELNLCDTAIEEVPSSVECLTNLKELYLSRCSTLNRLSTSICKLKS 758 (1103)
Q Consensus 681 ~lp~~~~l~~L~~L~l~~c~~l~~~~~--~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~ 758 (1103)
++....+++|+.|++++|. +..++. ...+|+.|++++|.+..++. +..+++|+.|++++|.+.+..+ +..+++
T Consensus 214 -~~~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~ 288 (466)
T 1o6v_A 214 -ITPLGILTNLDELSLNGNQ-LKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP--LAGLTA 288 (466)
T ss_dssp -CGGGGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG--GTTCTT
T ss_pred -cccccccCCCCEEECCCCC-cccchhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc--ccCCCc
Confidence 3333478999999999974 444443 35689999999999998876 8899999999999998776544 889999
Q ss_pred CcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCccccCccccCCCCCCEE
Q 044579 759 LHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESLPSSIKQLSQLRKL 838 (1103)
Q Consensus 759 L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L 838 (1103)
|+.|++++|... .++. +..+++|+.|+|++|.+.+..| +..+++|+.|++++|.++.++ .+..+++|+.|
T Consensus 289 L~~L~L~~n~l~----~~~~-~~~l~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L 358 (466)
T 1o6v_A 289 LTNLELNENQLE----DISP-ISNLKNLTYLTLYFNNISDISP----VSSLTKLQRLFFYNNKVSDVS-SLANLTNINWL 358 (466)
T ss_dssp CSEEECCSSCCS----CCGG-GGGCTTCSEEECCSSCCSCCGG----GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEE
T ss_pred cCeEEcCCCccc----Cchh-hcCCCCCCEEECcCCcCCCchh----hccCccCCEeECCCCccCCch-hhccCCCCCEE
Confidence 999999997543 2443 7899999999999998765442 567899999999999999885 78999999999
Q ss_pred eccCCcCCcccCccccccccceecccccccccC
Q 044579 839 DLSNCNMLLSLPELPLFLEDLEARNCKRLQFLP 871 (1103)
Q Consensus 839 ~L~~n~~l~~lp~~~~~L~~L~~~~c~~l~~~~ 871 (1103)
++++|++.+..| +..+..|..+++.++.+.+
T Consensus 359 ~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 359 SAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp ECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred eCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 999999888777 6667777777777776655
No 37
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.93 E-value=1.7e-24 Score=270.46 Aligned_cols=94 Identities=21% Similarity=0.145 Sum_probs=49.6
Q ss_pred CccccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCccccC-ccccCCCCCCEEeccCCcCC--cccCccc
Q 044579 777 PSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESLP-SSIKQLSQLRKLDLSNCNML--LSLPELP 853 (1103)
Q Consensus 777 p~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~lp-~~i~~l~~L~~L~L~~n~~l--~~lp~~~ 853 (1103)
|..+..+++|+.|+|++|.+.+.+| ...+.++++|++|++++|.++.++ ..+..+++|+.|++++|.+. +.+|..+
T Consensus 398 ~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~ 476 (680)
T 1ziw_A 398 SDAFSWLGHLEVLDLGLNEIGQELT-GQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF 476 (680)
T ss_dssp TTTTTTCTTCCEEECCSSCCEEECC-SGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTT
T ss_pred hhhhhCCCCCCEEeCCCCcCccccC-cccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccc
Confidence 4455666666666666666554443 233455566666666666555332 33444555555555555432 3444444
Q ss_pred cccccceecccccccccC
Q 044579 854 LFLEDLEARNCKRLQFLP 871 (1103)
Q Consensus 854 ~~L~~L~~~~c~~l~~~~ 871 (1103)
..+..|..++++++++.+
T Consensus 477 ~~l~~L~~L~Ls~N~l~~ 494 (680)
T 1ziw_A 477 QPLRNLTILDLSNNNIAN 494 (680)
T ss_dssp TTCTTCCEEECCSSCCCC
T ss_pred ccCCCCCEEECCCCCCCc
Confidence 455555555555555443
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=4.1e-25 Score=270.61 Aligned_cols=299 Identities=15% Similarity=0.109 Sum_probs=188.5
Q ss_pred ccCCCCcceeechHhhhcCcccceEEEecCCCCCccccCcceecC-CCcccCCCceEEEEEcCCCCCCCCCcc--ccccc
Q 044579 522 LDLSKTKDIHLSSQAFANMSNLRLLKFYMPERGGVPIMSSKVHLD-QGLEDLPEKLRYLHWHGYPLKTLPFDF--ELENL 598 (1103)
Q Consensus 522 L~l~~~~~~~~~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~l~-~~l~~l~~~Lr~L~l~~~~l~~lp~~~--~l~~L 598 (1103)
++++++....+++..|.++++|++|++++|.+. .++ ..+..++ +|++|++++|.++.+|... .+++|
T Consensus 56 l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~---------~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 56 VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE---------EIDTYAFAYAH-TIQKLYMGFNAIRYLPPHVFQNVPLL 125 (597)
T ss_dssp EEESSCEESEECTHHHHHCCCCSEEECTTSCCC---------EECTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred EEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC---------CCChHHhcCCC-CCCEEECCCCcCCCCCHHHHcCCCCC
Confidence 455556666677777777777777777776542 222 2444444 6777777777777776543 67777
Q ss_pred cccccccccccccccc-cccCCcceEecCCCCCCCccCCC-CCCCCCccEEEecCCCCCCcccccccCCCcccEEEccCC
Q 044579 599 IELRLPYSKVEQIWEG-KKEASKLKSIDLCHSQHLIRMPD-LSEIPNLERTNFFNCTNLVLVPSSIQNFNNLSMLCFRGC 676 (1103)
Q Consensus 599 ~~L~L~~n~i~~l~~~-~~~l~~L~~L~L~~~~~~~~~p~-l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~~ 676 (1103)
++|+|++|.++.+|.. +.++++|++|+|++|.+....|. +..+++|++|++++|... .++ ++.+++|+.|++++|
T Consensus 126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~--~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYN 202 (597)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS-BCC--GGGCTTCSEEECCSS
T ss_pred CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC-CcC--hhhhhhhhhhhcccC
Confidence 7777777777777665 46777777777777776555553 677777777777776433 232 556677777777775
Q ss_pred CCCcccCCCCCCCCCcEEEccCCcCCCcCCCcCCCccEEecCCccceecCccccCCCCCCEEecCCCcccccccccccCC
Q 044579 677 ESLRSFPRDIHFVSPVTIDFSFCVNLTEFPKISGKITELNLCDTAIEEVPSSVECLTNLKELYLSRCSTLNRLSTSICKL 756 (1103)
Q Consensus 677 ~~l~~lp~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l 756 (1103)
. +..++ ...+|+.|++++|..-...+....+|+.|+|++|.+... .++..+++|+.|+|++|.+.+..|..++.+
T Consensus 203 ~-l~~l~---~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 277 (597)
T 3oja_B 203 L-LSTLA---IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKM 277 (597)
T ss_dssp C-CSEEE---CCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred c-ccccc---CCchhheeeccCCcccccccccCCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCc
Confidence 3 33222 234566777776543222223345677777777766653 456667777777777777666666667777
Q ss_pred CCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCccccCccccCCCCCC
Q 044579 757 KSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESLPSSIKQLSQLR 836 (1103)
Q Consensus 757 ~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~ 836 (1103)
++|+.|+|++|. +..+|..+..+++|+.|+|++|.+. .+| ..+..+++|+.|+|++|.++.+| +..+++|+
T Consensus 278 ~~L~~L~Ls~N~----l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~--~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~ 348 (597)
T 3oja_B 278 QRLERLYISNNR----LVALNLYGQPIPTLKVLDLSHNHLL-HVE--RNQPQFDRLENLYLDHNSIVTLK--LSTHHTLK 348 (597)
T ss_dssp SSCCEEECTTSC----CCEEECSSSCCTTCCEEECCSSCCC-CCG--GGHHHHTTCSEEECCSSCCCCCC--CCTTCCCS
T ss_pred cCCCEEECCCCC----CCCCCcccccCCCCcEEECCCCCCC-ccC--cccccCCCCCEEECCCCCCCCcC--hhhcCCCC
Confidence 777777777653 2234555566677777777776644 442 23455667777777777776664 55666777
Q ss_pred EEeccCCcCCc
Q 044579 837 KLDLSNCNMLL 847 (1103)
Q Consensus 837 ~L~L~~n~~l~ 847 (1103)
.|+|++|++..
T Consensus 349 ~L~l~~N~~~~ 359 (597)
T 3oja_B 349 NLTLSHNDWDC 359 (597)
T ss_dssp EEECCSSCEEH
T ss_pred EEEeeCCCCCC
Confidence 77777776543
No 39
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=9.8e-25 Score=260.40 Aligned_cols=293 Identities=20% Similarity=0.197 Sum_probs=214.4
Q ss_pred CCCceEEEEEcCCCCCCCCC-cc-cccccccccccccccccc-ccccccCCcceEecCCCCCCCccCCC-CCCCCCccEE
Q 044579 572 LPEKLRYLHWHGYPLKTLPF-DF-ELENLIELRLPYSKVEQI-WEGKKEASKLKSIDLCHSQHLIRMPD-LSEIPNLERT 647 (1103)
Q Consensus 572 l~~~Lr~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~n~i~~l-~~~~~~l~~L~~L~L~~~~~~~~~p~-l~~l~~L~~L 647 (1103)
++.+|+.|++++|.++.++. .+ .+++|++|+|++|.++.+ |..+.++++|++|+|++|.+....+. |.++++|++|
T Consensus 30 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 109 (477)
T 2id5_A 30 IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL 109 (477)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEE
T ss_pred CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEE
Confidence 34577888888888877754 34 678888888888888766 56677888888888888875544333 6778888888
Q ss_pred EecCCCCCCcccccccCCCcccEEEccCCCCCcccCCCC-CCCCCcEEEccCCcCCCcCCC----cCCCccEEecCCccc
Q 044579 648 NFFNCTNLVLVPSSIQNFNNLSMLCFRGCESLRSFPRDI-HFVSPVTIDFSFCVNLTEFPK----ISGKITELNLCDTAI 722 (1103)
Q Consensus 648 ~L~~~~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~l~~c~~l~~~~~----~~~~L~~L~L~~~~i 722 (1103)
+|++|......+..+..+++|+.|++++|......|..+ .+++|+.|++++|. +..++. .+.+|+.|++++|.+
T Consensus 110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~i 188 (477)
T 2id5_A 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLNI 188 (477)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEESCCC
T ss_pred ECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhcccCCCcEEeCCCCcC
Confidence 888877666667778888888888888865444444444 67778888887763 444442 346788888888888
Q ss_pred eecCc-cccCCCCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccccCC-ccccCCCCCCeeeccCCCCCCCC
Q 044579 723 EEVPS-SVECLTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELP-SSFANLEGLEKLVLVGCSKLNKL 800 (1103)
Q Consensus 723 ~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp-~~~~~l~~L~~L~L~~~~~~~~l 800 (1103)
..++. .+..+++|+.|+|++|...+.+|..+....+|++|+|++|.. ..+| ..+..+++|+.|+|++|.+....
T Consensus 189 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 264 (477)
T 2id5_A 189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL----TAVPYLAVRHLVYLRFLNLSYNPISTIE 264 (477)
T ss_dssp CEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCC----CSCCHHHHTTCTTCCEEECCSSCCCEEC
T ss_pred cEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcc----cccCHHHhcCccccCeeECCCCcCCccC
Confidence 87665 678888888888888888888887777777888888888643 3355 35778888888888888765433
Q ss_pred CCCcccCCCCCCCEEeCCCCCcccc-CccccCCCCCCEEeccCCcCCcccCccccccccceecccccccccC
Q 044579 801 PHSIDFCCLSSLQWLDLSGNNFESL-PSSIKQLSQLRKLDLSNCNMLLSLPELPLFLEDLEARNCKRLQFLP 871 (1103)
Q Consensus 801 p~~~~~~~l~~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~~~~c~~l~~~~ 871 (1103)
+..+..+++|+.|+|++|.++.+ |..+..+++|+.|+|++|++.+..+..+..+..|..+++.+|.+..
T Consensus 265 --~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 265 --GSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp --TTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred --hhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 34467788888888888888865 5677888888888888888766555566667777777777666543
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=6.8e-25 Score=254.41 Aligned_cols=300 Identities=15% Similarity=0.119 Sum_probs=243.9
Q ss_pred cccCCCCcceeechHhhhcCcccceEEEecCCCCCccccCcceecC-CCcccCCCceEEEEEcCCCCCCCCCc-c-cccc
Q 044579 521 FLDLSKTKDIHLSSQAFANMSNLRLLKFYMPERGGVPIMSSKVHLD-QGLEDLPEKLRYLHWHGYPLKTLPFD-F-ELEN 597 (1103)
Q Consensus 521 ~L~l~~~~~~~~~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~l~-~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~l~~ 597 (1103)
.++++++....+++..|.++++|++|++++|.+. .++ ..+..++ +|++|++++|.++.+|.. + .+++
T Consensus 49 ~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~---------~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~ 118 (390)
T 3o6n_A 49 IVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE---------EIDTYAFAYAH-TIQKLYMGFNAIRYLPPHVFQNVPL 118 (390)
T ss_dssp EEEEESCEESEECTHHHHHCCCCSEEECTTSCCC---------EECTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred EEEecCCchhhCChhHhcccccCcEEECCCCccc---------ccChhhccCCC-CcCEEECCCCCCCcCCHHHhcCCCC
Confidence 4667777777888889999999999999988653 233 3555555 899999999999998765 3 7999
Q ss_pred ccccccccccccccccc-cccCCcceEecCCCCCCCccCCC-CCCCCCccEEEecCCCCCCcccccccCCCcccEEEccC
Q 044579 598 LIELRLPYSKVEQIWEG-KKEASKLKSIDLCHSQHLIRMPD-LSEIPNLERTNFFNCTNLVLVPSSIQNFNNLSMLCFRG 675 (1103)
Q Consensus 598 L~~L~L~~n~i~~l~~~-~~~l~~L~~L~L~~~~~~~~~p~-l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~ 675 (1103)
|++|+|++|.++.+|.. +..+++|++|+|++|.+....|. +..+++|++|++++|... .+ .++.+++|+.|++++
T Consensus 119 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~--~~~~l~~L~~L~l~~ 195 (390)
T 3o6n_A 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HV--DLSLIPSLFHANVSY 195 (390)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS-BC--CGGGCTTCSEEECCS
T ss_pred CCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC-cc--ccccccccceeeccc
Confidence 99999999999999877 58899999999999987766564 889999999999997543 33 367789999999998
Q ss_pred CCCCcccCCCCCCCCCcEEEccCCcCCCcCCCcCCCccEEecCCccceecCccccCCCCCCEEecCCCcccccccccccC
Q 044579 676 CESLRSFPRDIHFVSPVTIDFSFCVNLTEFPKISGKITELNLCDTAIEEVPSSVECLTNLKELYLSRCSTLNRLSTSICK 755 (1103)
Q Consensus 676 ~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~ 755 (1103)
|. +..++ ...+|+.|++++|.....-.....+|+.|++++|.+..+ .++..+++|+.|+|++|.+.+..|..+..
T Consensus 196 n~-l~~~~---~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (390)
T 3o6n_A 196 NL-LSTLA---IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVK 270 (390)
T ss_dssp SC-CSEEE---CCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred cc-ccccC---CCCcceEEECCCCeeeeccccccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccc
Confidence 64 44333 345789999998754333223456899999999999886 46889999999999999988888999999
Q ss_pred CCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCccccCccccCCCCC
Q 044579 756 LKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESLPSSIKQLSQL 835 (1103)
Q Consensus 756 l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L 835 (1103)
+++|++|+|++|. +..+|..+..+++|+.|+|++|.+. .+| ..+..+++|+.|+|++|.++.+| +..+++|
T Consensus 271 l~~L~~L~L~~n~----l~~~~~~~~~l~~L~~L~L~~n~l~-~~~--~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L 341 (390)
T 3o6n_A 271 MQRLERLYISNNR----LVALNLYGQPIPTLKVLDLSHNHLL-HVE--RNQPQFDRLENLYLDHNSIVTLK--LSTHHTL 341 (390)
T ss_dssp CSSCCEEECCSSC----CCEEECSSSCCTTCCEEECCSSCCC-CCG--GGHHHHTTCSEEECCSSCCCCCC--CCTTCCC
T ss_pred cccCCEEECCCCc----CcccCcccCCCCCCCEEECCCCcce-ecC--ccccccCcCCEEECCCCccceeC--chhhccC
Confidence 9999999999974 3446777788999999999999755 553 34567899999999999999886 7889999
Q ss_pred CEEeccCCcCCc
Q 044579 836 RKLDLSNCNMLL 847 (1103)
Q Consensus 836 ~~L~L~~n~~l~ 847 (1103)
+.|+|++|++..
T Consensus 342 ~~L~l~~N~~~~ 353 (390)
T 3o6n_A 342 KNLTLSHNDWDC 353 (390)
T ss_dssp SEEECCSSCEEH
T ss_pred CEEEcCCCCccc
Confidence 999999998654
No 41
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=6.4e-25 Score=262.00 Aligned_cols=292 Identities=20% Similarity=0.219 Sum_probs=169.1
Q ss_pred cccCCCCcceeechHhhhcCcccceEEEecCCCCCccccCcceecCCCcccCCCceEEEEEcCCCCCCCCCcc--ccccc
Q 044579 521 FLDLSKTKDIHLSSQAFANMSNLRLLKFYMPERGGVPIMSSKVHLDQGLEDLPEKLRYLHWHGYPLKTLPFDF--ELENL 598 (1103)
Q Consensus 521 ~L~l~~~~~~~~~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~--~l~~L 598 (1103)
.||++++....+.+..|.++++|++|++++|.+.+ ..+..+..++ +|++|++++|.++.+|... .+++|
T Consensus 36 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~--------~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L 106 (477)
T 2id5_A 36 LLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA--------VEPGAFNNLF-NLRTLGLRSNRLKLIPLGVFTGLSNL 106 (477)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE--------ECTTTTTTCT-TCCEEECCSSCCCSCCTTSSTTCTTC
T ss_pred EEECCCCccceECHhHccCCCCCCEEECCCCccCE--------eChhhhhCCc-cCCEEECCCCcCCccCcccccCCCCC
Confidence 45666666666666677777777777777664421 1234455554 6777777777777776542 56777
Q ss_pred cccccccccccccc-cccccCCcceEecCCCCCCCccCC-CCCCCCCccEEEecCCCCCCcccccccCCCcccEEEccCC
Q 044579 599 IELRLPYSKVEQIW-EGKKEASKLKSIDLCHSQHLIRMP-DLSEIPNLERTNFFNCTNLVLVPSSIQNFNNLSMLCFRGC 676 (1103)
Q Consensus 599 ~~L~L~~n~i~~l~-~~~~~l~~L~~L~L~~~~~~~~~p-~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~~ 676 (1103)
++|+|++|++..++ ..+..+++|+.|+|++|.+....+ .|.++++|++|++++|......+..+.++++|+.|++++|
T Consensus 107 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 186 (477)
T 2id5_A 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL 186 (477)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESC
T ss_pred CEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCC
Confidence 77777777776553 456667777777777776554444 3666777777777776544333345667777777777765
Q ss_pred CCCcccCCCC-CCCCCcEEEccCCcCCCcCCCcCCCccEEecCCccceecCccccCCCCCCEEecCCCcccccccccccC
Q 044579 677 ESLRSFPRDI-HFVSPVTIDFSFCVNLTEFPKISGKITELNLCDTAIEEVPSSVECLTNLKELYLSRCSTLNRLSTSICK 755 (1103)
Q Consensus 677 ~~l~~lp~~~-~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~ 755 (1103)
......+..+ .+++|+.|++++|..+..+ |..+....+|+.|+|++|.+....+..+..
T Consensus 187 ~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~--------------------~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 246 (477)
T 2id5_A 187 NINAIRDYSFKRLYRLKVLEISHWPYLDTM--------------------TPNCLYGLNLTSLSITHCNLTAVPYLAVRH 246 (477)
T ss_dssp CCCEECTTCSCSCTTCCEEEEECCTTCCEE--------------------CTTTTTTCCCSEEEEESSCCCSCCHHHHTT
T ss_pred cCcEeChhhcccCcccceeeCCCCcccccc--------------------CcccccCccccEEECcCCcccccCHHHhcC
Confidence 4333222223 5556666666665544443 333333445555555555544333334555
Q ss_pred CCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCccccCc-cccCCCC
Q 044579 756 LKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESLPS-SIKQLSQ 834 (1103)
Q Consensus 756 l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~ 834 (1103)
+++|+.|+|++|..... .+..+..+++|+.|+|++|.+.... +..+..+++|+.|+|++|.++.+|. .+..+++
T Consensus 247 l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 321 (477)
T 2id5_A 247 LVYLRFLNLSYNPISTI---EGSMLHELLRLQEIQLVGGQLAVVE--PYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGN 321 (477)
T ss_dssp CTTCCEEECCSSCCCEE---CTTSCTTCTTCCEEECCSSCCSEEC--TTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGG
T ss_pred ccccCeeECCCCcCCcc---ChhhccccccCCEEECCCCccceEC--HHHhcCcccCCEEECCCCcCceeCHhHcCCCcc
Confidence 55555555555432211 2334555566666666665544433 2344556666666666666666654 3456666
Q ss_pred CCEEeccCCcCC
Q 044579 835 LRKLDLSNCNML 846 (1103)
Q Consensus 835 L~~L~L~~n~~l 846 (1103)
|+.|+|++|++.
T Consensus 322 L~~L~l~~N~l~ 333 (477)
T 2id5_A 322 LETLILDSNPLA 333 (477)
T ss_dssp CCEEECCSSCEE
T ss_pred cCEEEccCCCcc
Confidence 666666666654
No 42
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=7.5e-24 Score=249.35 Aligned_cols=311 Identities=22% Similarity=0.171 Sum_probs=217.1
Q ss_pred cccCCCCcceeechHhhhcCcccceEEEecCCCCCccccCcceecCCCcccCCCceEEEEEcCCCCCCCCCccccccccc
Q 044579 521 FLDLSKTKDIHLSSQAFANMSNLRLLKFYMPERGGVPIMSSKVHLDQGLEDLPEKLRYLHWHGYPLKTLPFDFELENLIE 600 (1103)
Q Consensus 521 ~L~l~~~~~~~~~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~ 600 (1103)
.++++++....++. .+++|+.|++++|.+.+ +..++.+|++|++++|.++.+|....+++|++
T Consensus 95 ~L~l~~n~l~~lp~----~~~~L~~L~l~~n~l~~-------------l~~~~~~L~~L~L~~n~l~~lp~~~~l~~L~~ 157 (454)
T 1jl5_A 95 SLVASCNSLTELPE----LPQSLKSLLVDNNNLKA-------------LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKI 157 (454)
T ss_dssp EEECCSSCCSSCCC----CCTTCCEEECCSSCCSC-------------CCSCCTTCCEEECCSSCCSSCCCCTTCTTCCE
T ss_pred EEEccCCcCCcccc----ccCCCcEEECCCCccCc-------------ccCCCCCCCEEECcCCCCCCCcccCCCCCCCE
Confidence 34555555544432 24678888887775532 12234589999999999999985448899999
Q ss_pred cccccccccccccccccCCcceEecCCCCCCCccCCCCCCCCCccEEEecCCCCCCcccccccCCCcccEEEccCCCCCc
Q 044579 601 LRLPYSKVEQIWEGKKEASKLKSIDLCHSQHLIRMPDLSEIPNLERTNFFNCTNLVLVPSSIQNFNNLSMLCFRGCESLR 680 (1103)
Q Consensus 601 L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~~~~l~ 680 (1103)
|++++|+++.+|... .+|++|++++|.+.. +|.++.+++|++|++++|.. ..+|... ++|+.|++++| .+.
T Consensus 158 L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~-l~~~~~l~~L~~L~l~~N~l-~~l~~~~---~~L~~L~l~~n-~l~ 228 (454)
T 1jl5_A 158 IDVDNNSLKKLPDLP---PSLEFIAAGNNQLEE-LPELQNLPFLTAIYADNNSL-KKLPDLP---LSLESIVAGNN-ILE 228 (454)
T ss_dssp EECCSSCCSCCCCCC---TTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCC-SSCCCCC---TTCCEEECCSS-CCS
T ss_pred EECCCCcCcccCCCc---ccccEEECcCCcCCc-CccccCCCCCCEEECCCCcC-CcCCCCc---CcccEEECcCC-cCC
Confidence 999999998887654 589999999997554 77899999999999998754 3455433 58999999997 455
Q ss_pred ccCCCCCCCCCcEEEccCCcCCCcCCCcCCCccEEecCCccceecCccccCCCCCCEEecCCCcccccccccccCCCCCc
Q 044579 681 SFPRDIHFVSPVTIDFSFCVNLTEFPKISGKITELNLCDTAIEEVPSSVECLTNLKELYLSRCSTLNRLSTSICKLKSLH 760 (1103)
Q Consensus 681 ~lp~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~ 760 (1103)
.+|....+++|++|++++| .+..+|..+.+|+.|++++|.+..+|.. +++|+.|++++|.+.+ +|.. .++|+
T Consensus 229 ~lp~~~~l~~L~~L~l~~N-~l~~l~~~~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~-l~~~---~~~L~ 300 (454)
T 1jl5_A 229 ELPELQNLPFLTTIYADNN-LLKTLPDLPPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSG-LSEL---PPNLY 300 (454)
T ss_dssp SCCCCTTCTTCCEEECCSS-CCSSCCSCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSE-ESCC---CTTCC
T ss_pred cccccCCCCCCCEEECCCC-cCCcccccccccCEEECCCCcccccCcc---cCcCCEEECcCCccCc-ccCc---CCcCC
Confidence 8886448899999999986 5667888888999999999999988875 4789999999998665 2221 26899
Q ss_pred EEeecCCCCCCccccCCccccCC-CCCCeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCccccCccccCCCCCCEEe
Q 044579 761 ELILSDCLSLETITELPSSFANL-EGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESLPSSIKQLSQLRKLD 839 (1103)
Q Consensus 761 ~L~L~~~~~l~~i~~lp~~~~~l-~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~ 839 (1103)
.|++++|... .++ .+ ++|+.|++++|.+.+ +|. .+++|+.|++++|.++.+|. .+++|+.|+
T Consensus 301 ~L~l~~N~l~----~i~----~~~~~L~~L~Ls~N~l~~-lp~-----~~~~L~~L~L~~N~l~~lp~---~l~~L~~L~ 363 (454)
T 1jl5_A 301 YLNASSNEIR----SLC----DLPPSLEELNVSNNKLIE-LPA-----LPPRLERLIASFNHLAEVPE---LPQNLKQLH 363 (454)
T ss_dssp EEECCSSCCS----EEC----CCCTTCCEEECCSSCCSC-CCC-----CCTTCCEEECCSSCCSCCCC---CCTTCCEEE
T ss_pred EEECcCCcCC----ccc----CCcCcCCEEECCCCcccc-ccc-----cCCcCCEEECCCCccccccc---hhhhccEEE
Confidence 9999987532 232 23 589999999998654 643 26899999999999999997 578999999
Q ss_pred ccCCcCCc--ccCccccccccceecccccccccCCCCchhhhhhhcccCCCCC
Q 044579 840 LSNCNMLL--SLPELPLFLEDLEARNCKRLQFLPEIPSCLEELDASMLEKPPK 890 (1103)
Q Consensus 840 L~~n~~l~--~lp~~~~~L~~L~~~~c~~l~~~~~~p~~l~~L~~~~~~~~~~ 890 (1103)
|++|++.+ .+|..+..| . .+...+.+|..+.+|..+.+++|+.
T Consensus 364 L~~N~l~~l~~ip~~l~~L---~-----~n~~~~~i~~~~~~L~~L~ls~N~l 408 (454)
T 1jl5_A 364 VEYNPLREFPDIPESVEDL---R-----MNSHLAEVPELPQNLKQLHVETNPL 408 (454)
T ss_dssp CCSSCCSSCCCCCTTCCEE---E-----CCC----------------------
T ss_pred CCCCCCCcCCCChHHHHhh---h-----hcccccccccccCcCCEEECCCCcC
Confidence 99999877 566554443 1 1233344444344444444444443
No 43
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.92 E-value=2.7e-24 Score=266.51 Aligned_cols=358 Identities=20% Similarity=0.203 Sum_probs=238.5
Q ss_pred ccccCCCCcceeechHhhhcCcccceEEEecCCCCCccccCcceecCC-CcccCCCceEEEEEcCCCCCCCCCc-c-ccc
Q 044579 520 IFLDLSKTKDIHLSSQAFANMSNLRLLKFYMPERGGVPIMSSKVHLDQ-GLEDLPEKLRYLHWHGYPLKTLPFD-F-ELE 596 (1103)
Q Consensus 520 i~L~l~~~~~~~~~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~l~~-~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~l~ 596 (1103)
-.||+++|.+..+++.+|.++++|++|++++|.+. .++. .+..++ +|++|++++|+++.+|.. | +++
T Consensus 55 ~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~---------~i~~~~f~~L~-~L~~L~Ls~N~l~~l~~~~f~~L~ 124 (635)
T 4g8a_A 55 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ---------TIEDGAYQSLS-HLSTLILTGNPIQSLALGAFSGLS 124 (635)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC---------EECTTTTTTCT-TCCEEECTTCCCCEECGGGGTTCT
T ss_pred CEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC---------CcChhHhcCCC-CCCEEEccCCcCCCCCHHHhcCCC
Confidence 36899999999999999999999999999998653 3444 456666 899999999999999865 4 799
Q ss_pred cccccccccccccccccc-cccCCcceEecCCCCCCCc-cCCC-CCCCCCccEEEecCCCCCCcccccccCCCc------
Q 044579 597 NLIELRLPYSKVEQIWEG-KKEASKLKSIDLCHSQHLI-RMPD-LSEIPNLERTNFFNCTNLVLVPSSIQNFNN------ 667 (1103)
Q Consensus 597 ~L~~L~L~~n~i~~l~~~-~~~l~~L~~L~L~~~~~~~-~~p~-l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~------ 667 (1103)
+|++|+|++|+++.++.. ++++++|++|+|++|.+.. ..|. ++.+++|++|++++|......+..+..+.+
T Consensus 125 ~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~ 204 (635)
T 4g8a_A 125 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 204 (635)
T ss_dssp TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCC
T ss_pred CCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhh
Confidence 999999999999998864 8999999999999998654 3344 788999999999987654333333222211
Q ss_pred ---------------------ccEEEccCCCCC------------------------------c----------------
Q 044579 668 ---------------------LSMLCFRGCESL------------------------------R---------------- 680 (1103)
Q Consensus 668 ---------------------L~~L~L~~~~~l------------------------------~---------------- 680 (1103)
+..|++.++... .
T Consensus 205 ~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 284 (635)
T 4g8a_A 205 SLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 284 (635)
T ss_dssp EEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEE
T ss_pred hhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhh
Confidence 112222221000 0
Q ss_pred -----------------------------------ccCCCCCCCCCcEEEccCCcCCCc--------------------C
Q 044579 681 -----------------------------------SFPRDIHFVSPVTIDFSFCVNLTE--------------------F 705 (1103)
Q Consensus 681 -----------------------------------~lp~~~~l~~L~~L~l~~c~~l~~--------------------~ 705 (1103)
.++......+++.|++.+|..... .
T Consensus 285 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~ 364 (635)
T 4g8a_A 285 EFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA 364 (635)
T ss_dssp EEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCB
T ss_pred hhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCC
Confidence 000000123445555554421100 0
Q ss_pred C--CcCCCccEEecCCccce--------------------------ecCccccCCCCCCEEecCCCccccccc-ccccCC
Q 044579 706 P--KISGKITELNLCDTAIE--------------------------EVPSSVECLTNLKELYLSRCSTLNRLS-TSICKL 756 (1103)
Q Consensus 706 ~--~~~~~L~~L~L~~~~i~--------------------------~lp~~~~~l~~L~~L~L~~~~~~~~lp-~~l~~l 756 (1103)
+ ....+|+.|+++.|.+. .++..+..+++|+.+++.+|......+ ..+..+
T Consensus 365 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l 444 (635)
T 4g8a_A 365 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 444 (635)
T ss_dssp CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTC
T ss_pred cccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccc
Confidence 0 01345666666666554 333334445555555555554443333 335566
Q ss_pred CCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCcccc-CccccCCCCC
Q 044579 757 KSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESL-PSSIKQLSQL 835 (1103)
Q Consensus 757 ~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~l-p~~i~~l~~L 835 (1103)
++|+.++++.|..... .|..+..+++|+.|+|++|.....++ +..+..+++|+.|+|++|+++.+ |..+..+++|
T Consensus 445 ~~l~~l~ls~n~l~~~---~~~~~~~~~~L~~L~Ls~N~~~~~~~-~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L 520 (635)
T 4g8a_A 445 RNLIYLDISHTHTRVA---FNGIFNGLSSLEVLKMAGNSFQENFL-PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 520 (635)
T ss_dssp TTCCEEECTTSCCEEC---CTTTTTTCTTCCEEECTTCEEGGGEE-CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred cccccccccccccccc---cccccccchhhhhhhhhhcccccccC-chhhhhccccCEEECCCCccCCcChHHHcCCCCC
Confidence 6777777766543322 45566778888888888887554432 34567788899999999988876 5667888999
Q ss_pred CEEeccCCcCCcccCccccccccceecccccccccCCCCchhh----hhhhcccCCCCCC
Q 044579 836 RKLDLSNCNMLLSLPELPLFLEDLEARNCKRLQFLPEIPSCLE----ELDASMLEKPPKT 891 (1103)
Q Consensus 836 ~~L~L~~n~~l~~lp~~~~~L~~L~~~~c~~l~~~~~~p~~l~----~L~~~~~~~~~~~ 891 (1103)
+.|+|++|++.+..|..+..++.|+.+++++|++.+..|..+. +|..+.+++||..
T Consensus 521 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 521 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp CEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred CEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 9999999887777777778888888888888888777776543 3445556666643
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=2.1e-24 Score=264.41 Aligned_cols=305 Identities=16% Similarity=0.161 Sum_probs=243.3
Q ss_pred cCcccceEEEecCCCCCccccCcceecCCCcc-cCCCceEEEEEcCCCCCCCCC-cc-ccccccccccccccccccccc-
Q 044579 539 NMSNLRLLKFYMPERGGVPIMSSKVHLDQGLE-DLPEKLRYLHWHGYPLKTLPF-DF-ELENLIELRLPYSKVEQIWEG- 614 (1103)
Q Consensus 539 ~l~~Lr~L~l~~n~~~~~~~~~~~~~l~~~l~-~l~~~Lr~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~n~i~~l~~~- 614 (1103)
.+++++.|++++|.+ ..+|..+. .++ +|++|++++|.+..+|. .+ .+++|++|+|++|.++.++..
T Consensus 49 ~l~~l~~l~l~~~~l---------~~lp~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 118 (597)
T 3oja_B 49 TLNNQKIVTFKNSTM---------RKLPAALLDSFR-QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV 118 (597)
T ss_dssp GGCCCSEEEESSCEE---------SEECTHHHHHCC-CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred cCCCceEEEeeCCCC---------CCcCHHHHccCC-CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHH
Confidence 478899999988743 34565543 344 89999999999998876 44 899999999999999988754
Q ss_pred cccCCcceEecCCCCCCCccCCC-CCCCCCccEEEecCCCCCCcccccccCCCcccEEEccCCCCCcccCCCCCCCCCcE
Q 044579 615 KKEASKLKSIDLCHSQHLIRMPD-LSEIPNLERTNFFNCTNLVLVPSSIQNFNNLSMLCFRGCESLRSFPRDIHFVSPVT 693 (1103)
Q Consensus 615 ~~~l~~L~~L~L~~~~~~~~~p~-l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~ 693 (1103)
+.++++|++|+|++|.+....+. |+.+++|++|+|++|......|..++.+++|+.|++++|. +..++ .-.+++|+.
T Consensus 119 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~-~~~l~~L~~ 196 (597)
T 3oja_B 119 FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD-LSLIPSLFH 196 (597)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCC-GGGCTTCSE
T ss_pred HcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcC-hhhhhhhhh
Confidence 68999999999999987655554 6899999999999988777777789999999999999975 44443 236789999
Q ss_pred EEccCCcCCCcCCCcCCCccEEecCCccceecCccccCCCCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCcc
Q 044579 694 IDFSFCVNLTEFPKISGKITELNLCDTAIEEVPSSVECLTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETI 773 (1103)
Q Consensus 694 L~l~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i 773 (1103)
|++++|. +..++ ...+|+.|++++|.+..+|..+ .++|+.|+|++|.+.+ +..++.+++|+.|+|++|.....
T Consensus 197 L~l~~n~-l~~l~-~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~- 269 (597)
T 3oja_B 197 ANVSYNL-LSTLA-IPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKI- 269 (597)
T ss_dssp EECCSSC-CSEEE-CCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEE-
T ss_pred hhcccCc-ccccc-CCchhheeeccCCccccccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCC-
Confidence 9999863 44333 3457999999999999888755 3789999999998876 36789999999999999865443
Q ss_pred ccCCccccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCccccCccccCCCCCCEEeccCCcCCcccCccc
Q 044579 774 TELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESLPSSIKQLSQLRKLDLSNCNMLLSLPELP 853 (1103)
Q Consensus 774 ~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~l~~lp~~~ 853 (1103)
.|..++.+++|+.|+|++|.+.+ + +..+..+++|+.|+|++|.++.+|..+..+++|+.|+|++|++.+..+..+
T Consensus 270 --~~~~~~~l~~L~~L~Ls~N~l~~-l--~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 344 (597)
T 3oja_B 270 --MYHPFVKMQRLERLYISNNRLVA-L--NLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTH 344 (597)
T ss_dssp --ESGGGTTCSSCCEEECTTSCCCE-E--ECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCCCTT
T ss_pred --CHHHhcCccCCCEEECCCCCCCC-C--CcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcChhhc
Confidence 67889999999999999998654 4 334466899999999999999999999999999999999999766543334
Q ss_pred cccccceeccccccccc
Q 044579 854 LFLEDLEARNCKRLQFL 870 (1103)
Q Consensus 854 ~~L~~L~~~~c~~l~~~ 870 (1103)
+ .|..+++.+|.+.
T Consensus 345 ~---~L~~L~l~~N~~~ 358 (597)
T 3oja_B 345 H---TLKNLTLSHNDWD 358 (597)
T ss_dssp C---CCSEEECCSSCEE
T ss_pred C---CCCEEEeeCCCCC
Confidence 4 4444445555543
No 45
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=9.5e-24 Score=248.68 Aligned_cols=299 Identities=19% Similarity=0.130 Sum_probs=234.1
Q ss_pred hhhcCcccceEEEecCCCCCccccCcceecCCCcccCCCceEEEEEcCCCCCCCCCcccccccccccccccccccccccc
Q 044579 536 AFANMSNLRLLKFYMPERGGVPIMSSKVHLDQGLEDLPEKLRYLHWHGYPLKTLPFDFELENLIELRLPYSKVEQIWEGK 615 (1103)
Q Consensus 536 ~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~ 615 (1103)
.+.++++|+.|++++|.+.+ +| ++..++ +|++|++++|.++.+| ...+++|++|+|++|.++.++ +
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~---------~~-~l~~l~-~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~--~ 102 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITD---------MT-GIEKLT-GLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD--V 102 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCC---------CT-TGGGCT-TCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC--C
T ss_pred ChhHcCCCCEEEccCCCccc---------Ch-hhcccC-CCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee--c
Confidence 57889999999999997643 23 456665 8999999999999997 348999999999999999885 8
Q ss_pred ccCCcceEecCCCCCCCccCCCCCCCCCccEEEecCCCCCCcccccccCCCcccEEEccCCCCCcccCCCCCCCCCcEEE
Q 044579 616 KEASKLKSIDLCHSQHLIRMPDLSEIPNLERTNFFNCTNLVLVPSSIQNFNNLSMLCFRGCESLRSFPRDIHFVSPVTID 695 (1103)
Q Consensus 616 ~~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~ 695 (1103)
..+++|++|+|++|.+.. +| ++.+++|++|++++|.... ++ ++.+++|+.|++++|..++.++ ...+++|+.|+
T Consensus 103 ~~l~~L~~L~L~~N~l~~-l~-~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~ 176 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLTK-LD-VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKLD-VTPQTQLTTLD 176 (457)
T ss_dssp TTCTTCCEEECCSSCCSC-CC-CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCCC-CTTCTTCCEEE
T ss_pred CCCCcCCEEECCCCcCCe-ec-CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCcccccc-cccCCcCCEEE
Confidence 899999999999998655 54 9999999999999976444 53 8899999999999998887773 33789999999
Q ss_pred ccCCcCCCcCC-CcCCCccEEecCCccceecCccccCCCCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccc
Q 044579 696 FSFCVNLTEFP-KISGKITELNLCDTAIEEVPSSVECLTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETIT 774 (1103)
Q Consensus 696 l~~c~~l~~~~-~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~ 774 (1103)
+++|. ++.+| ....+|+.|++++|.++.++ ++.+++|+.|++++|.+.+ +| ++.+++|+.|++++|....
T Consensus 177 ls~n~-l~~l~l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~--- 247 (457)
T 3bz5_A 177 CSFNK-ITELDVSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE--- 247 (457)
T ss_dssp CCSSC-CCCCCCTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC---
T ss_pred CCCCc-cceeccccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC---
Confidence 99974 55555 23467899999999999874 8889999999999998877 56 8899999999999975433
Q ss_pred cCC-ccccCCC-------CCCeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCc-cccCc--------cccCCCCCCE
Q 044579 775 ELP-SSFANLE-------GLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNF-ESLPS--------SIKQLSQLRK 837 (1103)
Q Consensus 775 ~lp-~~~~~l~-------~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l-~~lp~--------~i~~l~~L~~ 837 (1103)
+| ..+.++. +|+.|++++|...+.+| ...+++|+.|+|++|.+ ..+|. .+..+++|+.
T Consensus 248 -~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~----~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~ 322 (457)
T 3bz5_A 248 -LDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ----AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVY 322 (457)
T ss_dssp -CCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE----CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCE
T ss_pred -cCHHHCCCCCEEeccCCCCCEEECCCCccCCccc----ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCE
Confidence 33 2233332 45566666666555553 35678999999999853 34442 2566788899
Q ss_pred EeccCCcCCcccCccccccccceecccccccccC
Q 044579 838 LDLSNCNMLLSLPELPLFLEDLEARNCKRLQFLP 871 (1103)
Q Consensus 838 L~L~~n~~l~~lp~~~~~L~~L~~~~c~~l~~~~ 871 (1103)
|++++|++.+ ++ +..++.|..+++.+|++.+
T Consensus 323 L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 323 LYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp EECTTCCCSC-CC--CTTCTTCSEEECCSSCCCB
T ss_pred EECCCCcccc-cc--cccCCcCcEEECCCCCCCC
Confidence 9999888776 43 6677788888888888765
No 46
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=9e-24 Score=248.67 Aligned_cols=277 Identities=22% Similarity=0.264 Sum_probs=156.0
Q ss_pred CCceEEEEEcCCCCCCCCCccccccccccccccccccccccccccCCcceEecCCCCCCCccCCCCCCCCCccEEEecCC
Q 044579 573 PEKLRYLHWHGYPLKTLPFDFELENLIELRLPYSKVEQIWEGKKEASKLKSIDLCHSQHLIRMPDLSEIPNLERTNFFNC 652 (1103)
Q Consensus 573 ~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~~ 652 (1103)
+.+|++|++++|.++.+|.. +.+|++|++++|+++.++... ++|++|++++|.+.. +|+++.+++|++|++++|
T Consensus 90 ~~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~l~~~~---~~L~~L~L~~n~l~~-lp~~~~l~~L~~L~l~~N 163 (454)
T 1jl5_A 90 PPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDLP---PLLEYLGVSNNQLEK-LPELQNSSFLKIIDVDNN 163 (454)
T ss_dssp CTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSCC---TTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSS
T ss_pred cCCCCEEEccCCcCCccccc--cCCCcEEECCCCccCcccCCC---CCCCEEECcCCCCCC-CcccCCCCCCCEEECCCC
Confidence 34667777777776666643 356677777777666654321 567777777776443 566777777777777775
Q ss_pred CCCCcccccccCCCcccEEEccCCCCCcccCCCCCCCCCcEEEccCCcCCCcCCCcCCCccEEecCCccceecCccccCC
Q 044579 653 TNLVLVPSSIQNFNNLSMLCFRGCESLRSFPRDIHFVSPVTIDFSFCVNLTEFPKISGKITELNLCDTAIEEVPSSVECL 732 (1103)
Q Consensus 653 ~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l 732 (1103)
. +..+|..+ .+|++|++++| .+..+|....+++|+.|++++|. +..+|....+|++|++++|.+..+|. ++.+
T Consensus 164 ~-l~~lp~~~---~~L~~L~L~~n-~l~~l~~~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~n~l~~lp~-~~~l 236 (454)
T 1jl5_A 164 S-LKKLPDLP---PSLEFIAAGNN-QLEELPELQNLPFLTAIYADNNS-LKKLPDLPLSLESIVAGNNILEELPE-LQNL 236 (454)
T ss_dssp C-CSCCCCCC---TTCCEEECCSS-CCSSCCCCTTCTTCCEEECCSSC-CSSCCCCCTTCCEEECCSSCCSSCCC-CTTC
T ss_pred c-CcccCCCc---ccccEEECcCC-cCCcCccccCCCCCCEEECCCCc-CCcCCCCcCcccEEECcCCcCCcccc-cCCC
Confidence 4 33455433 46777777765 34446643366777777777653 44566666677777777777776663 6677
Q ss_pred CCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCC--CCCCC-------
Q 044579 733 TNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLN--KLPHS------- 803 (1103)
Q Consensus 733 ~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~--~lp~~------- 803 (1103)
++|+.|++++|.+.+ +|.. +++|+.|++++|.. ..+|.. +++|+.|++++|.+.+ .+|..
T Consensus 237 ~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l----~~l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~ 305 (454)
T 1jl5_A 237 PFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYL----TDLPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNAS 305 (454)
T ss_dssp TTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCC----SCCCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECC
T ss_pred CCCCEEECCCCcCCc-cccc---ccccCEEECCCCcc----cccCcc---cCcCCEEECcCCccCcccCcCCcCCEEECc
Confidence 777777777766543 3432 35666777766532 223332 2456666666655433 11100
Q ss_pred ----cccCCC-CCCCEEeCCCCCccccCccccCCCCCCEEeccCCcCCcccCccccccccceecccccccccC--CCCch
Q 044579 804 ----IDFCCL-SSLQWLDLSGNNFESLPSSIKQLSQLRKLDLSNCNMLLSLPELPLFLEDLEARNCKRLQFLP--EIPSC 876 (1103)
Q Consensus 804 ----~~~~~l-~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~~~~c~~l~~~~--~~p~~ 876 (1103)
..+..+ ++|+.|++++|+++.+|.. +++|+.|++++|.+. .+|.. +..|+.+++.+|.+.+ .+|.+
T Consensus 306 ~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~l~-~lp~~---l~~L~~L~L~~N~l~~l~~ip~~ 378 (454)
T 1jl5_A 306 SNEIRSLCDLPPSLEELNVSNNKLIELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLREFPDIPES 378 (454)
T ss_dssp SSCCSEECCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSSCCCCCTT
T ss_pred CCcCCcccCCcCcCCEEECCCCcccccccc---CCcCCEEECCCCccc-cccch---hhhccEEECCCCCCCcCCCChHH
Confidence 000111 3566666666666655543 355666666666543 34442 2333333444444444 55555
Q ss_pred hhhh
Q 044579 877 LEEL 880 (1103)
Q Consensus 877 l~~L 880 (1103)
+..|
T Consensus 379 l~~L 382 (454)
T 1jl5_A 379 VEDL 382 (454)
T ss_dssp CCEE
T ss_pred HHhh
Confidence 4444
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.91 E-value=2.7e-23 Score=235.28 Aligned_cols=282 Identities=17% Similarity=0.209 Sum_probs=168.0
Q ss_pred cccceEEEecCCCCCccccCcceecCCCcccCCCceEEEEEcCCCCCCCCC-cc-cccccccccccccccccc-cccccc
Q 044579 541 SNLRLLKFYMPERGGVPIMSSKVHLDQGLEDLPEKLRYLHWHGYPLKTLPF-DF-ELENLIELRLPYSKVEQI-WEGKKE 617 (1103)
Q Consensus 541 ~~Lr~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~n~i~~l-~~~~~~ 617 (1103)
.+|+.++++++.+. .+|..+ +++|++|++++|.++.++. .+ .+++|++|+|++|+++.+ |..+..
T Consensus 33 c~l~~l~~~~~~l~---------~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 100 (332)
T 2ft3_A 33 CHLRVVQCSDLGLK---------AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSP 100 (332)
T ss_dssp EETTEEECCSSCCS---------SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTT
T ss_pred ccCCEEECCCCCcc---------ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhC
Confidence 46778887776442 233322 3478888888888887754 34 678888888888888766 566778
Q ss_pred CCcceEecCCCCCCCccCCC-CCCCCCccEEEecCCCCCCcccccccCCCcccEEEccCCCCC--cccCCCCCCCCCcEE
Q 044579 618 ASKLKSIDLCHSQHLIRMPD-LSEIPNLERTNFFNCTNLVLVPSSIQNFNNLSMLCFRGCESL--RSFPRDIHFVSPVTI 694 (1103)
Q Consensus 618 l~~L~~L~L~~~~~~~~~p~-l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~~~~l--~~lp~~~~l~~L~~L 694 (1103)
+++|++|+|++|.+. .+|. +. ++|++|++++|......+..+..+++|+.|++++|..- ...|..+...+|+.|
T Consensus 101 l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L 177 (332)
T 2ft3_A 101 LRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYL 177 (332)
T ss_dssp CTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCC
T ss_pred cCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEE
Confidence 888888888888754 3443 33 77888888876554444445778888888888876542 133333322266666
Q ss_pred EccCCcCCCcCCCc-CCCccEEecCCccceecC-ccccCCCCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCc
Q 044579 695 DFSFCVNLTEFPKI-SGKITELNLCDTAIEEVP-SSVECLTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLET 772 (1103)
Q Consensus 695 ~l~~c~~l~~~~~~-~~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~ 772 (1103)
++++|. +..+|.. ..+|++|++++|.+..++ ..+..+++|+.|+|++|.+.+..+..+..+++|++|+|++|.
T Consensus 178 ~l~~n~-l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~---- 252 (332)
T 2ft3_A 178 RISEAK-LTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK---- 252 (332)
T ss_dssp BCCSSB-CSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC----
T ss_pred ECcCCC-CCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc----
Confidence 666643 3334432 245666666666666554 456666666666666666655555556666666666666653
Q ss_pred cccCCccccCCCCCCeeeccCCCCCCCCCCCcccCC------CCCCCEEeCCCCCcc--c-cCccccCCCCCCEEeccCC
Q 044579 773 ITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCC------LSSLQWLDLSGNNFE--S-LPSSIKQLSQLRKLDLSNC 843 (1103)
Q Consensus 773 i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~------l~~L~~L~Ls~n~l~--~-lp~~i~~l~~L~~L~L~~n 843 (1103)
+..+|..+..+++|+.|++++|.+.. ++. ..+.. .++|+.|++++|.+. . .|..+..+++|+.|+|++|
T Consensus 253 l~~lp~~l~~l~~L~~L~l~~N~l~~-~~~-~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 253 LSRVPAGLPDLKLLQVVYLHTNNITK-VGV-NDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CCBCCTTGGGCTTCCEEECCSSCCCB-CCT-TSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred CeecChhhhcCccCCEEECCCCCCCc-cCh-hHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 22356666666666666666665432 221 11111 345566666666554 2 2344555666666666655
Q ss_pred c
Q 044579 844 N 844 (1103)
Q Consensus 844 ~ 844 (1103)
+
T Consensus 331 ~ 331 (332)
T 2ft3_A 331 K 331 (332)
T ss_dssp -
T ss_pred c
Confidence 4
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.91 E-value=5.6e-23 Score=232.45 Aligned_cols=283 Identities=20% Similarity=0.218 Sum_probs=176.2
Q ss_pred CcccceEEEecCCCCCccccCcceecCCCcccCCCceEEEEEcCCCCCCCCCc-c-cccccccccccccccccc-ccccc
Q 044579 540 MSNLRLLKFYMPERGGVPIMSSKVHLDQGLEDLPEKLRYLHWHGYPLKTLPFD-F-ELENLIELRLPYSKVEQI-WEGKK 616 (1103)
Q Consensus 540 l~~Lr~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~i~~l-~~~~~ 616 (1103)
..+|+.++++++.+. .+|.. ++.+|++|++++|.++.+|.. + .+++|++|+|++|.++.+ |..+.
T Consensus 30 ~c~l~~l~~~~~~l~---------~lp~~---~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 97 (330)
T 1xku_A 30 QCHLRVVQCSDLGLE---------KVPKD---LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA 97 (330)
T ss_dssp EEETTEEECTTSCCC---------SCCCS---CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTT
T ss_pred cCCCeEEEecCCCcc---------ccCcc---CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhc
Confidence 346777877666442 23322 335788888888888888763 3 678888888888888876 66788
Q ss_pred cCCcceEecCCCCCCCccCCC-CCCCCCccEEEecCCCCCCcccccccCCCcccEEEccCCCCCc--ccCCCC-CCCCCc
Q 044579 617 EASKLKSIDLCHSQHLIRMPD-LSEIPNLERTNFFNCTNLVLVPSSIQNFNNLSMLCFRGCESLR--SFPRDI-HFVSPV 692 (1103)
Q Consensus 617 ~l~~L~~L~L~~~~~~~~~p~-l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~~~~l~--~lp~~~-~l~~L~ 692 (1103)
.+++|++|+|++|.+. .+|. +. ++|++|++++|......+..+.++++|+.|++++|.... ..+..+ .+++|+
T Consensus 98 ~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~ 174 (330)
T 1xku_A 98 PLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 174 (330)
T ss_dssp TCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCC
T ss_pred CCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcC
Confidence 8888888888888754 3443 32 688888888876555555567888888888888865432 333333 566777
Q ss_pred EEEccCCcCCCcCCC-cCCCccEEecCCccceec-CccccCCCCCCEEecCCCcccccccccccCCCCCcEEeecCCCCC
Q 044579 693 TIDFSFCVNLTEFPK-ISGKITELNLCDTAIEEV-PSSVECLTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSL 770 (1103)
Q Consensus 693 ~L~l~~c~~l~~~~~-~~~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l 770 (1103)
.|++++|. +..+|. ...+|++|++++|.+..+ |..+..+++|+.|+|++|.+.+..+..+..+++|++|+|++|.
T Consensus 175 ~L~l~~n~-l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-- 251 (330)
T 1xku_A 175 YIRIADTN-ITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-- 251 (330)
T ss_dssp EEECCSSC-CCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC--
T ss_pred EEECCCCc-cccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc--
Confidence 77777653 334443 235666777777666655 4456666677777777666665555566666667777776653
Q ss_pred CccccCCccccCCCCCCeeeccCCCCCCCCCCCcccC------CCCCCCEEeCCCCCccc---cCccccCCCCCCEEecc
Q 044579 771 ETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFC------CLSSLQWLDLSGNNFES---LPSSIKQLSQLRKLDLS 841 (1103)
Q Consensus 771 ~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~------~l~~L~~L~Ls~n~l~~---lp~~i~~l~~L~~L~L~ 841 (1103)
+..+|..+..+++|++|+|++|.+.. ++. ..++ ..++|+.|++++|.+.. .|..+..+++|+.++|+
T Consensus 252 --l~~lp~~l~~l~~L~~L~l~~N~i~~-~~~-~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~ 327 (330)
T 1xku_A 252 --LVKVPGGLADHKYIQVVYLHNNNISA-IGS-NDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLG 327 (330)
T ss_dssp --CSSCCTTTTTCSSCCEEECCSSCCCC-CCT-TSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC-
T ss_pred --CccCChhhccCCCcCEEECCCCcCCc-cCh-hhcCCcccccccccccceEeecCcccccccCccccccccceeEEEec
Confidence 22356666666666666666666432 221 1121 23556666666665542 23455556666666666
Q ss_pred CCc
Q 044579 842 NCN 844 (1103)
Q Consensus 842 ~n~ 844 (1103)
+|+
T Consensus 328 ~N~ 330 (330)
T 1xku_A 328 NYK 330 (330)
T ss_dssp ---
T ss_pred ccC
Confidence 653
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.90 E-value=4.1e-23 Score=233.75 Aligned_cols=280 Identities=17% Similarity=0.155 Sum_probs=218.8
Q ss_pred ceEEEEEcCCCCCCCCCccccccccccccccccccccc-cccccCCcceEecCCCCCCCccCCC-CCCCCCccEEEecCC
Q 044579 575 KLRYLHWHGYPLKTLPFDFELENLIELRLPYSKVEQIW-EGKKEASKLKSIDLCHSQHLIRMPD-LSEIPNLERTNFFNC 652 (1103)
Q Consensus 575 ~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~-~~~~~l~~L~~L~L~~~~~~~~~p~-l~~l~~L~~L~L~~~ 652 (1103)
+|+.++++++.++.+|..+ .++|++|+|++|.++.++ ..+.++++|++|+|++|.+....|. +.++++|++|++++|
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 6889999999999999876 478999999999999886 4789999999999999987766554 899999999999997
Q ss_pred CCCCcccccccCCCcccEEEccCCCCCcccCCC-C-CCCCCcEEEccCCcCCC--cCCCcCC--CccEEecCCccceecC
Q 044579 653 TNLVLVPSSIQNFNNLSMLCFRGCESLRSFPRD-I-HFVSPVTIDFSFCVNLT--EFPKISG--KITELNLCDTAIEEVP 726 (1103)
Q Consensus 653 ~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~-~-~l~~L~~L~l~~c~~l~--~~~~~~~--~L~~L~L~~~~i~~lp 726 (1103)
. +..+|..+. ++|++|++++|. +..+|.. + .+++|+.|++++|..-. ..+..+. +|+.|++++|.+..+|
T Consensus 113 ~-l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~ 188 (332)
T 2ft3_A 113 H-LVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIP 188 (332)
T ss_dssp C-CCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCC
T ss_pred c-CCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccC
Confidence 5 557777666 899999999964 5566654 3 78999999999875421 2333222 7889999999999988
Q ss_pred ccccCCCCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCccc
Q 044579 727 SSVECLTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDF 806 (1103)
Q Consensus 727 ~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~ 806 (1103)
..+. ++|+.|+|++|.+.+..|..+..+++|+.|+|++|..... .+..+..+++|+.|+|++|.+. .+| ..+
T Consensus 189 ~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~---~~~~~~~l~~L~~L~L~~N~l~-~lp--~~l 260 (332)
T 2ft3_A 189 KDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI---ENGSLSFLPTLRELHLDNNKLS-RVP--AGL 260 (332)
T ss_dssp SSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCC---CTTGGGGCTTCCEEECCSSCCC-BCC--TTG
T ss_pred cccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcC---ChhHhhCCCCCCEEECCCCcCe-ecC--hhh
Confidence 8765 7899999999988888778899999999999999754332 3457888999999999998865 664 346
Q ss_pred CCCCCCCEEeCCCCCccccCcc-ccC------CCCCCEEeccCCcCC--cccCccccccccceecccccc
Q 044579 807 CCLSSLQWLDLSGNNFESLPSS-IKQ------LSQLRKLDLSNCNML--LSLPELPLFLEDLEARNCKRL 867 (1103)
Q Consensus 807 ~~l~~L~~L~Ls~n~l~~lp~~-i~~------l~~L~~L~L~~n~~l--~~lp~~~~~L~~L~~~~c~~l 867 (1103)
..+++|+.|+|++|.++.+|.. +.. .++|+.|++++|++. ...|..+..++.|...++.++
T Consensus 261 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 261 PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp GGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred hcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 7789999999999999987643 222 467899999999876 445555666666666655544
No 50
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.90 E-value=1.1e-22 Score=229.92 Aligned_cols=280 Identities=19% Similarity=0.159 Sum_probs=213.4
Q ss_pred ceEEEEEcCCCCCCCCCcccccccccccccccccccccc-ccccCCcceEecCCCCCCCccCC-CCCCCCCccEEEecCC
Q 044579 575 KLRYLHWHGYPLKTLPFDFELENLIELRLPYSKVEQIWE-GKKEASKLKSIDLCHSQHLIRMP-DLSEIPNLERTNFFNC 652 (1103)
Q Consensus 575 ~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~-~~~~l~~L~~L~L~~~~~~~~~p-~l~~l~~L~~L~L~~~ 652 (1103)
+|+.++++++.++.+|..+ .++|++|+|++|+++.++. .+.++++|++|+|++|.+....| .+..+++|++|++++|
T Consensus 32 ~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred CCeEEEecCCCccccCccC-CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence 6889999999999999766 3689999999999998876 68999999999999998776656 4899999999999997
Q ss_pred CCCCcccccccCCCcccEEEccCCCCCcccCCC-C-CCCCCcEEEccCCcCCC--cCCC---cCCCccEEecCCccceec
Q 044579 653 TNLVLVPSSIQNFNNLSMLCFRGCESLRSFPRD-I-HFVSPVTIDFSFCVNLT--EFPK---ISGKITELNLCDTAIEEV 725 (1103)
Q Consensus 653 ~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~-~-~l~~L~~L~l~~c~~l~--~~~~---~~~~L~~L~L~~~~i~~l 725 (1103)
. +..+|..+. ++|+.|++++|. +..++.. + .+++|+.|++++|.... ..+. ...+|++|++++|.+..+
T Consensus 111 ~-l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l 186 (330)
T 1xku_A 111 Q-LKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI 186 (330)
T ss_dssp C-CSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred c-CCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC
Confidence 5 557777665 799999999965 4455443 3 78899999999875432 2222 346788999999999888
Q ss_pred CccccCCCCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcc
Q 044579 726 PSSVECLTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSID 805 (1103)
Q Consensus 726 p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~ 805 (1103)
|..+. ++|+.|++++|.+.+..|..+..+++|++|+|++|..... .+..+..+++|+.|+|++|.+. .+| ..
T Consensus 187 ~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~L~~N~l~-~lp--~~ 258 (330)
T 1xku_A 187 PQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV---DNGSLANTPHLRELHLNNNKLV-KVP--GG 258 (330)
T ss_dssp CSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEE---CTTTGGGSTTCCEEECCSSCCS-SCC--TT
T ss_pred Ccccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCcee---ChhhccCCCCCCEEECCCCcCc-cCC--hh
Confidence 87664 7899999999988877788888999999999998754332 3446788889999999988755 664 34
Q ss_pred cCCCCCCCEEeCCCCCccccCccc-c------CCCCCCEEeccCCcCCc--ccCccccccccceecccccc
Q 044579 806 FCCLSSLQWLDLSGNNFESLPSSI-K------QLSQLRKLDLSNCNMLL--SLPELPLFLEDLEARNCKRL 867 (1103)
Q Consensus 806 ~~~l~~L~~L~Ls~n~l~~lp~~i-~------~l~~L~~L~L~~n~~l~--~lp~~~~~L~~L~~~~c~~l 867 (1103)
+..+++|++|+|++|.++.+|... . ..++|+.|++++|++.. ..|..+..+..|...++++|
T Consensus 259 l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 259 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp TTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred hccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 677889999999999888876432 1 24778889999888653 33445555555555555444
No 51
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.90 E-value=1.3e-22 Score=245.82 Aligned_cols=271 Identities=20% Similarity=0.183 Sum_probs=214.5
Q ss_pred cCcccceEEEecCCCCCccccCcceecCCCcccCCCceEEEEEcCCCCCCCCCccccccccccccccccccccccccccC
Q 044579 539 NMSNLRLLKFYMPERGGVPIMSSKVHLDQGLEDLPEKLRYLHWHGYPLKTLPFDFELENLIELRLPYSKVEQIWEGKKEA 618 (1103)
Q Consensus 539 ~l~~Lr~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l 618 (1103)
...+++.|++++|.+. .+|..+. .+|++|++++|.++.+|. .+++|++|+|++|+++.+|. .+
T Consensus 38 ~~~~l~~L~ls~n~L~---------~lp~~l~---~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l 100 (622)
T 3g06_A 38 LNNGNAVLNVGESGLT---------TLPDCLP---AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV---LP 100 (622)
T ss_dssp HHHCCCEEECCSSCCS---------CCCSCCC---TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC---CC
T ss_pred cCCCCcEEEecCCCcC---------ccChhhC---CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC---CC
Confidence 3457999999988653 3444332 589999999999999998 67899999999999999987 67
Q ss_pred CcceEecCCCCCCCccCCCCCCCCCccEEEecCCCCCCcccccccCCCcccEEEccCCCCCcccCCCCCCCCCcEEEccC
Q 044579 619 SKLKSIDLCHSQHLIRMPDLSEIPNLERTNFFNCTNLVLVPSSIQNFNNLSMLCFRGCESLRSFPRDIHFVSPVTIDFSF 698 (1103)
Q Consensus 619 ~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~ 698 (1103)
++|++|+|++|.+.. +|. .+++|+.|++++|. +..+|.. +++|++|++++| .+..+|. .+.+|+.|++++
T Consensus 101 ~~L~~L~Ls~N~l~~-l~~--~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N-~l~~l~~--~~~~L~~L~L~~ 170 (622)
T 3g06_A 101 PGLLELSIFSNPLTH-LPA--LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDN-QLASLPA--LPSELCKLWAYN 170 (622)
T ss_dssp TTCCEEEECSCCCCC-CCC--CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSS-CCSCCCC--CCTTCCEEECCS
T ss_pred CCCCEEECcCCcCCC-CCC--CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCC-cCCCcCC--ccCCCCEEECCC
Confidence 899999999997544 555 67899999999875 5567764 488999999996 5566665 357889999988
Q ss_pred CcCCCcCCCcCCCccEEecCCccceecCccccCCCCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccccCCc
Q 044579 699 CVNLTEFPKISGKITELNLCDTAIEEVPSSVECLTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELPS 778 (1103)
Q Consensus 699 c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~ 778 (1103)
| .+..+|..+.+|+.|++++|.+..+|.. +++|+.|++++|.+. .+|. .+++|+.|+|++|. +..+|
T Consensus 171 N-~l~~l~~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~----L~~lp- 237 (622)
T 3g06_A 171 N-QLTSLPMLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNR----LTSLP- 237 (622)
T ss_dssp S-CCSCCCCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSC----CSCCC-
T ss_pred C-CCCCCcccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCccc-ccCC---CCCCCCEEEccCCc----cCcCC-
Confidence 5 5667887788899999999999888864 478999999998765 4554 35789999999874 33356
Q ss_pred cccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCccccCccccCCCCCCEEeccCCcCCcccCccccccc
Q 044579 779 SFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESLPSSIKQLSQLRKLDLSNCNMLLSLPELPLFLE 857 (1103)
Q Consensus 779 ~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~l~~lp~~~~~L~ 857 (1103)
..+++|+.|+|++|.+. .+|. .+++|+.|+|++|+|+.+|..+..+++|+.|+|++|++.+..|..+..+.
T Consensus 238 --~~l~~L~~L~Ls~N~L~-~lp~-----~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 238 --VLPSELKELMVSGNRLT-SLPM-----LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp --CCCTTCCEEECCSSCCS-CCCC-----CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred --CCCCcCcEEECCCCCCC-cCCc-----ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 45688999999998754 5653 46889999999999999998899999999999999998887776555444
No 52
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=2.9e-23 Score=232.49 Aligned_cols=245 Identities=17% Similarity=0.175 Sum_probs=192.5
Q ss_pred cccccccccccccc---ccccccccCCcceEecCCC-CCCCccCCC-CCCCCCccEEEecCCCCCCcccccccCCCcccE
Q 044579 596 ENLIELRLPYSKVE---QIWEGKKEASKLKSIDLCH-SQHLIRMPD-LSEIPNLERTNFFNCTNLVLVPSSIQNFNNLSM 670 (1103)
Q Consensus 596 ~~L~~L~L~~n~i~---~l~~~~~~l~~L~~L~L~~-~~~~~~~p~-l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~ 670 (1103)
.+++.|+|++|.+. .+|..+.++++|++|+|++ |.+...+|. +.++++|++|++++|.....+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 57888888888887 4777788888888888884 666656664 777888888888887666677777888888888
Q ss_pred EEccCCCCCcccCCCCCCCCCcEEEccCCcCCCcCCCcCCCccEEecCCccce-ecCccccCCC-CCCEEecCCCccccc
Q 044579 671 LCFRGCESLRSFPRDIHFVSPVTIDFSFCVNLTEFPKISGKITELNLCDTAIE-EVPSSVECLT-NLKELYLSRCSTLNR 748 (1103)
Q Consensus 671 L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~L~~~~i~-~lp~~~~~l~-~L~~L~L~~~~~~~~ 748 (1103)
|++++|.....+|..+ ..+.+|++|++++|.+. .+|..+..++ +|+.|+|++|.+.+.
T Consensus 130 L~Ls~N~l~~~~p~~~--------------------~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~ 189 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSI--------------------SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK 189 (313)
T ss_dssp EECCSSEEESCCCGGG--------------------GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEE
T ss_pred EeCCCCccCCcCChHH--------------------hcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeecc
Confidence 8887765444444433 11245667777777777 7888888888 899999999998888
Q ss_pred ccccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCcc-ccCc
Q 044579 749 LSTSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFE-SLPS 827 (1103)
Q Consensus 749 lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~-~lp~ 827 (1103)
+|..+..++ |+.|++++|..... .|..+..+++|+.|+|++|.+...+|. +..+++|++|+|++|.++ .+|.
T Consensus 190 ~~~~~~~l~-L~~L~Ls~N~l~~~---~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~l~~L~~L~Ls~N~l~~~~p~ 262 (313)
T 1ogq_A 190 IPPTFANLN-LAFVDLSRNMLEGD---ASVLFGSDKNTQKIHLAKNSLAFDLGK---VGLSKNLNGLDLRNNRIYGTLPQ 262 (313)
T ss_dssp CCGGGGGCC-CSEEECCSSEEEEC---CGGGCCTTSCCSEEECCSSEECCBGGG---CCCCTTCCEEECCSSCCEECCCG
T ss_pred CChHHhCCc-ccEEECcCCcccCc---CCHHHhcCCCCCEEECCCCceeeecCc---ccccCCCCEEECcCCcccCcCCh
Confidence 898888887 99999999754333 677888999999999999987665532 567899999999999998 8899
Q ss_pred cccCCCCCCEEeccCCcCCcccCccccccccceeccccccc
Q 044579 828 SIKQLSQLRKLDLSNCNMLLSLPELPLFLEDLEARNCKRLQ 868 (1103)
Q Consensus 828 ~i~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~~~~c~~l~ 868 (1103)
.+..+++|+.|+|++|++.+.+|.. ..++.|...++.+|.
T Consensus 263 ~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 263 GLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp GGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred HHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 9999999999999999999999986 677778777777776
No 53
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=6.4e-23 Score=231.09 Aligned_cols=227 Identities=29% Similarity=0.382 Sum_probs=108.3
Q ss_pred cccccccccccccccccccccCCcceEecCCCCCCCccCCC-CCCCCCccEEEecCCCCCCcccccccCCCcccEEEccC
Q 044579 597 NLIELRLPYSKVEQIWEGKKEASKLKSIDLCHSQHLIRMPD-LSEIPNLERTNFFNCTNLVLVPSSIQNFNNLSMLCFRG 675 (1103)
Q Consensus 597 ~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~p~-l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~ 675 (1103)
++++|+|++|.++.+|..+..+++|++|+|++|.+. .+|. ++.+++|++|++++|... .+|..++++++|++|++++
T Consensus 82 ~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 82 GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRA 159 (328)
T ss_dssp TCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEE
T ss_pred ceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCC
Confidence 334444444444444444444555555555555443 3332 455555555555554332 5566666666777777766
Q ss_pred CCCCcccCCCCCCCCCcEEEccCCcCCCcCCCcCCCccEEecCCccceecCccccCCCCCCEEecCCCcccccccccccC
Q 044579 676 CESLRSFPRDIHFVSPVTIDFSFCVNLTEFPKISGKITELNLCDTAIEEVPSSVECLTNLKELYLSRCSTLNRLSTSICK 755 (1103)
Q Consensus 676 ~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~ 755 (1103)
|+.++.+|..+.. ..+.+ ....+.+|+.|++++|.++.+|.+++++++|+.|+|++|.+.+ +|..++.
T Consensus 160 n~~~~~~p~~~~~-----~~~~~------~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~ 227 (328)
T 4fcg_A 160 CPELTELPEPLAS-----TDASG------EHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPAIHH 227 (328)
T ss_dssp ETTCCCCCSCSEE-----EC-CC------CEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC-CCGGGGG
T ss_pred CCCccccChhHhh-----ccchh------hhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc-Cchhhcc
Confidence 6666665543310 00000 0011223444444444444555555555555555555554432 3334444
Q ss_pred CCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCccccCccccCCCCC
Q 044579 756 LKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESLPSSIKQLSQL 835 (1103)
Q Consensus 756 l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L 835 (1103)
+++|++|+|++|..... +|..++.+++|+.|+|++|...+ .+|..+..+++|
T Consensus 228 l~~L~~L~Ls~n~~~~~---~p~~~~~l~~L~~L~L~~n~~~~-------------------------~~p~~~~~l~~L 279 (328)
T 4fcg_A 228 LPKLEELDLRGCTALRN---YPPIFGGRAPLKRLILKDCSNLL-------------------------TLPLDIHRLTQL 279 (328)
T ss_dssp CTTCCEEECTTCTTCCB---CCCCTTCCCCCCEEECTTCTTCC-------------------------BCCTTGGGCTTC
T ss_pred CCCCCEEECcCCcchhh---hHHHhcCCCCCCEEECCCCCchh-------------------------hcchhhhcCCCC
Confidence 55555555554433322 44444444444444444444444 444455555555
Q ss_pred CEEeccCCcCCcccCccccccccceecccc
Q 044579 836 RKLDLSNCNMLLSLPELPLFLEDLEARNCK 865 (1103)
Q Consensus 836 ~~L~L~~n~~l~~lp~~~~~L~~L~~~~c~ 865 (1103)
+.|+|++|++++.+|..+..|..|....++
T Consensus 280 ~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 280 EKLDLRGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp CEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred CEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence 555555555555555555555544444443
No 54
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=6.4e-23 Score=231.08 Aligned_cols=224 Identities=23% Similarity=0.362 Sum_probs=153.1
Q ss_pred ceEEEEEcCCCCCCCCCcc-ccccccccccccccccccccccccCCcceEecCCCCCCCccCC-CCCCCCCccEEEecCC
Q 044579 575 KLRYLHWHGYPLKTLPFDF-ELENLIELRLPYSKVEQIWEGKKEASKLKSIDLCHSQHLIRMP-DLSEIPNLERTNFFNC 652 (1103)
Q Consensus 575 ~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~p-~l~~l~~L~~L~L~~~ 652 (1103)
.++.|++++|.++.+|..+ .+++|++|+|++|.++.+|..+..+++|++|+|++|.+. .+| .+..+++|++|++++|
T Consensus 82 ~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n 160 (328)
T 4fcg_A 82 GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRAC 160 (328)
T ss_dssp TCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEE
T ss_pred ceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCC
Confidence 4555555555555555544 455666666666666666665666666666666666544 333 3566666666666666
Q ss_pred CCCCcccccccC---------CCcccEEEccCCCCCcccCCCCCCCCCcEEEccCCcCCCcCCCcCCCccEEecCCccce
Q 044579 653 TNLVLVPSSIQN---------FNNLSMLCFRGCESLRSFPRDIHFVSPVTIDFSFCVNLTEFPKISGKITELNLCDTAIE 723 (1103)
Q Consensus 653 ~~l~~~~~~i~~---------l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~L~~~~i~ 723 (1103)
+.+..+|..++. +++|++|++++|. +..+|..+ ..+.+|++|++++|.+.
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l--------------------~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 161 PELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASI--------------------ANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp TTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGG--------------------GGCTTCCEEEEESSCCC
T ss_pred CCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhh--------------------cCCCCCCEEEccCCCCC
Confidence 666666655443 6667777766643 33444322 01234566666666777
Q ss_pred ecCccccCCCCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCC
Q 044579 724 EVPSSVECLTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHS 803 (1103)
Q Consensus 724 ~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~ 803 (1103)
.+|..+..+++|+.|+|++|.+.+.+|..++.+++|++|+|++|..... +|..+.++++|+.|+|++|++++.+|
T Consensus 220 ~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~---~p~~~~~l~~L~~L~L~~n~~~~~iP-- 294 (328)
T 4fcg_A 220 ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT---LPLDIHRLTQLEKLDLRGCVNLSRLP-- 294 (328)
T ss_dssp CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCB---CCTTGGGCTTCCEEECTTCTTCCCCC--
T ss_pred cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhh---cchhhhcCCCCCEEeCCCCCchhhcc--
Confidence 7888888999999999999999999999999999999999999876554 88888899999999999988888884
Q ss_pred cccCCCCCCCEEeCCCCCcccc
Q 044579 804 IDFCCLSSLQWLDLSGNNFESL 825 (1103)
Q Consensus 804 ~~~~~l~~L~~L~Ls~n~l~~l 825 (1103)
..+..+++|+.+++..+.+..+
T Consensus 295 ~~l~~L~~L~~l~l~~~~~~~l 316 (328)
T 4fcg_A 295 SLIAQLPANCIILVPPHLQAQL 316 (328)
T ss_dssp GGGGGSCTTCEEECCGGGSCC-
T ss_pred HHHhhccCceEEeCCHHHHHHH
Confidence 4567788888887776655443
No 55
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.89 E-value=3e-22 Score=242.69 Aligned_cols=268 Identities=23% Similarity=0.264 Sum_probs=158.5
Q ss_pred ceEEEEEcCCCCCCCCCccccccccccccccccccccccccccCCcceEecCCCCCCCccCCCCCCCCCccEEEecCCCC
Q 044579 575 KLRYLHWHGYPLKTLPFDFELENLIELRLPYSKVEQIWEGKKEASKLKSIDLCHSQHLIRMPDLSEIPNLERTNFFNCTN 654 (1103)
Q Consensus 575 ~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~~~~ 654 (1103)
+++.|++++|.++.+|..+. ++|++|+|++|+++.+|. .+++|++|+|++|.+. .+|. .+++|++|++++|.
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~-~lp~--~l~~L~~L~Ls~N~- 112 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLT-SLPV--LPPGLLELSIFSNP- 112 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCS-CCCC--CCTTCCEEEECSCC-
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCC-cCCC--CCCCCCEEECcCCc-
Confidence 46666666666666666554 566666666666666665 4566666666666633 3444 55666666666643
Q ss_pred CCcccccccCCCcccEEEccCCCCCcccCCCCCCCCCcEEEccCCcCCCcCCCcCCCccEEecCCccceecCccccCCCC
Q 044579 655 LVLVPSSIQNFNNLSMLCFRGCESLRSFPRDIHFVSPVTIDFSFCVNLTEFPKISGKITELNLCDTAIEEVPSSVECLTN 734 (1103)
Q Consensus 655 l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~ 734 (1103)
+..+|. .+++|+.|++++| .+..+|.. +++|++|++++| .+..+|..+++|+.|++++|.++.+| ..+++
T Consensus 113 l~~l~~---~l~~L~~L~L~~N-~l~~lp~~--l~~L~~L~Ls~N-~l~~l~~~~~~L~~L~L~~N~l~~l~---~~~~~ 182 (622)
T 3g06_A 113 LTHLPA---LPSGLCKLWIFGN-QLTSLPVL--PPGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTSLP---MLPSG 182 (622)
T ss_dssp CCCCCC---CCTTCCEEECCSS-CCSCCCCC--CTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCC---CCCTT
T ss_pred CCCCCC---CCCCcCEEECCCC-CCCcCCCC--CCCCCEEECcCC-cCCCcCCccCCCCEEECCCCCCCCCc---ccCCC
Confidence 334444 4566666666664 34455543 366666666665 45556666666666666666666666 34566
Q ss_pred CCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCE
Q 044579 735 LKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQW 814 (1103)
Q Consensus 735 L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~ 814 (1103)
|+.|+|++|.+.+ +|. .+++|+.|++++|.. ..+|.. +++|+.|+|++|.+. .+| ..+++|+.
T Consensus 183 L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l----~~l~~~---~~~L~~L~Ls~N~L~-~lp-----~~l~~L~~ 245 (622)
T 3g06_A 183 LQELSVSDNQLAS-LPT---LPSELYKLWAYNNRL----TSLPAL---PSGLKELIVSGNRLT-SLP-----VLPSELKE 245 (622)
T ss_dssp CCEEECCSSCCSC-CCC---CCTTCCEEECCSSCC----SSCCCC---CTTCCEEECCSSCCS-CCC-----CCCTTCCE
T ss_pred CcEEECCCCCCCC-CCC---ccchhhEEECcCCcc----cccCCC---CCCCCEEEccCCccC-cCC-----CCCCcCcE
Confidence 6666666665443 333 235666666666532 224432 356666666666543 243 23466666
Q ss_pred EeCCCCCccccCccccCCCCCCEEeccCCcCCcccCccccccccceecccccccccCCCCchhhhhh
Q 044579 815 LDLSGNNFESLPSSIKQLSQLRKLDLSNCNMLLSLPELPLFLEDLEARNCKRLQFLPEIPSCLEELD 881 (1103)
Q Consensus 815 L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~~~~c~~l~~~~~~p~~l~~L~ 881 (1103)
|+|++|.|+.+|. .+++|+.|+|++|++. .+|..+..+..|..+++.+|.+.+..|..+..|.
T Consensus 246 L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 246 LMVSGNRLTSLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp EECCSSCCSCCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred EECCCCCCCcCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 6666666666665 4566666666666544 5566566666666666666666666665555554
No 56
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.89 E-value=9.2e-25 Score=210.95 Aligned_cols=130 Identities=18% Similarity=0.314 Sum_probs=90.8
Q ss_pred CCCcccEEEcCccccccCchHHHHHHHHHh--CCCeEEeeCccccCCCcchHHHHHHHhhcceEEEEecCCccCchhhHH
Q 044579 6 SQSKYEVFLSFRGEDTRNGFTSHLAAALHR--KQIQFFIDDEELKKGDEISPALSNAIESSDISIIIFSKGYASSRWCLN 83 (1103)
Q Consensus 6 ~~~~~dvfis~~~~d~~~~~~~~l~~~L~~--~g~~~~~d~~~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~wc~~ 83 (1103)
..++|||||||+++|++ ||+||+++|++ +|+++|+|++|+.+|+.+.++|.+||++|+++|+|+|++|++|.||..
T Consensus 7 ~~k~YDvFISy~~~D~~--~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc~~ 84 (146)
T 3ub2_A 7 WSKDYDVCVCHSEEDLV--AAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKY 84 (146)
T ss_dssp TSSSEEEEEECCGGGHH--HHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHHHH
T ss_pred CCCcceEEEeCChhhHH--HHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHHHH
Confidence 45689999999999987 99999999998 699999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEEEeeeCCcc----cccccCchhhhhhhcccCCc---hhHHHHHHHH
Q 044579 84 ELVKILDCKKMNAQIVIPVFYQVDPSD----VRKQRGSFGEAFVNHDNNFP---GKVQKWRHAL 140 (1103)
Q Consensus 84 El~~~~~~~~~~~~~v~pif~~v~p~~----vr~~~g~~~~~~~~~~~~~~---~~~~~w~~al 140 (1103)
|+..++.+......+||||||+|++.+ +|....-. +..++..|. +.|.+|++|+
T Consensus 85 El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id---~~~~d~~f~~l~~~v~~~~~~~ 145 (146)
T 3ub2_A 85 QMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVD---GRGPDGGFRQVKEAVMRYLQTL 145 (146)
T ss_dssp HHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEE---TTSGGGGHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeee---ccChHhhHHHHHHHHHHHHHhc
Confidence 999999986433447889999998554 44443211 122333333 6677777654
No 57
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=2.4e-23 Score=233.20 Aligned_cols=249 Identities=21% Similarity=0.218 Sum_probs=210.7
Q ss_pred CceEEEEEcCCCCC---CCCCcc-cccccccccccc-cccc-ccccccccCCcceEecCCCCCCCccCCC-CCCCCCccE
Q 044579 574 EKLRYLHWHGYPLK---TLPFDF-ELENLIELRLPY-SKVE-QIWEGKKEASKLKSIDLCHSQHLIRMPD-LSEIPNLER 646 (1103)
Q Consensus 574 ~~Lr~L~l~~~~l~---~lp~~~-~l~~L~~L~L~~-n~i~-~l~~~~~~l~~L~~L~L~~~~~~~~~p~-l~~l~~L~~ 646 (1103)
.+++.|++++|.+. .+|..+ .+++|++|+|++ |.+. .+|..+.++++|++|+|++|.+...+|. +..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 48999999999998 488877 899999999995 8887 7888999999999999999998867775 999999999
Q ss_pred EEecCCCCCCcccccccCCCcccEEEccCCCCCcccCCCC-CCCCCcEEEccCCcCCCcCCCcCCCccEEecCCccce-e
Q 044579 647 TNFFNCTNLVLVPSSIQNFNNLSMLCFRGCESLRSFPRDI-HFVSPVTIDFSFCVNLTEFPKISGKITELNLCDTAIE-E 724 (1103)
Q Consensus 647 L~L~~~~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~L~~~~i~-~ 724 (1103)
|++++|.....+|..+..+++|++|++++|.....+|..+ .+. .+|+.|++++|.+. .
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~--------------------~~L~~L~L~~N~l~~~ 189 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS--------------------KLFTSMTISRNRLTGK 189 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCC--------------------TTCCEEECCSSEEEEE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhh--------------------hcCcEEECcCCeeecc
Confidence 9999998877899999999999999999986555666544 222 25677777777777 6
Q ss_pred cCccccCCCCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCc
Q 044579 725 VPSSVECLTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSI 804 (1103)
Q Consensus 725 lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~ 804 (1103)
+|..+..++ |+.|+|++|.+.+..|..+..+++|+.|+|++|.... .+..+..+++|++|+|++|.+.+.+| .
T Consensus 190 ~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p--~ 262 (313)
T 1ogq_A 190 IPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF----DLGKVGLSKNLNGLDLRNNRIYGTLP--Q 262 (313)
T ss_dssp CCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC----BGGGCCCCTTCCEEECCSSCCEECCC--G
T ss_pred CChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceee----ecCcccccCCCCEEECcCCcccCcCC--h
Confidence 788888887 9999999999988899999999999999999975432 34447889999999999999887774 4
Q ss_pred ccCCCCCCCEEeCCCCCcc-ccCccccCCCCCCEEeccCCcCCcccC
Q 044579 805 DFCCLSSLQWLDLSGNNFE-SLPSSIKQLSQLRKLDLSNCNMLLSLP 850 (1103)
Q Consensus 805 ~~~~l~~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~n~~l~~lp 850 (1103)
.+..+++|+.|+|++|.++ .+|.. ..+++|+.|++++|+.+-..|
T Consensus 263 ~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 263 GLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp GGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred HHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 5778999999999999998 67765 889999999999998554433
No 58
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.88 E-value=1.2e-21 Score=242.61 Aligned_cols=336 Identities=22% Similarity=0.179 Sum_probs=240.5
Q ss_pred cccCCCCcceeechHhhhcCcccceEEEecCCCCCccccCcceecCCC-cccCCCceEEEEEcCCCCCCCCCc-c-cccc
Q 044579 521 FLDLSKTKDIHLSSQAFANMSNLRLLKFYMPERGGVPIMSSKVHLDQG-LEDLPEKLRYLHWHGYPLKTLPFD-F-ELEN 597 (1103)
Q Consensus 521 ~L~l~~~~~~~~~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~l~~~-l~~l~~~Lr~L~l~~~~l~~lp~~-~-~l~~ 597 (1103)
+||++++.+..+++.+|.++++|++|+|++|.+. .++.+ +..++ +|++|++++|.++.+|.. + .+++
T Consensus 80 ~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~---------~l~~~~f~~L~-~L~~L~Ls~N~l~~l~~~~~~~L~~ 149 (635)
T 4g8a_A 80 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ---------SLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKT 149 (635)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC---------EECGGGGTTCT-TCCEEECTTSCCCCSTTCCCTTCTT
T ss_pred EEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC---------CCCHHHhcCCC-CCCEEECCCCcCCCCChhhhhcCcc
Confidence 6788999888999999999999999999998653 34443 45555 899999999999999875 4 7899
Q ss_pred ccccccccccccc--cccccccCCcceEecCCCCCCCccCCC-CCC---------------------------CCCccEE
Q 044579 598 LIELRLPYSKVEQ--IWEGKKEASKLKSIDLCHSQHLIRMPD-LSE---------------------------IPNLERT 647 (1103)
Q Consensus 598 L~~L~L~~n~i~~--l~~~~~~l~~L~~L~L~~~~~~~~~p~-l~~---------------------------l~~L~~L 647 (1103)
|++|+|++|.++. +|..+..+++|++|+|++|++....+. +.. ...++.+
T Consensus 150 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l 229 (635)
T 4g8a_A 150 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKL 229 (635)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEE
T ss_pred cCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhh
Confidence 9999999999874 467788899999999999875433221 111 1112222
Q ss_pred EecCCCCCC------------------------------c----------------------------c-----------
Q 044579 648 NFFNCTNLV------------------------------L----------------------------V----------- 658 (1103)
Q Consensus 648 ~L~~~~~l~------------------------------~----------------------------~----------- 658 (1103)
++.++.... . .
T Consensus 230 ~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 309 (635)
T 4g8a_A 230 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVS 309 (635)
T ss_dssp EEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCS
T ss_pred hhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccc
Confidence 322221000 0 0
Q ss_pred -----------cccccCCCcccEEEccCCCCC--------------------cccCCCCCCCCCcEEEccCCcCCC----
Q 044579 659 -----------PSSIQNFNNLSMLCFRGCESL--------------------RSFPRDIHFVSPVTIDFSFCVNLT---- 703 (1103)
Q Consensus 659 -----------~~~i~~l~~L~~L~L~~~~~l--------------------~~lp~~~~l~~L~~L~l~~c~~l~---- 703 (1103)
...+....+|+.|++.+|... ...+....+++|+.|+++.+....
T Consensus 310 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~ 389 (635)
T 4g8a_A 310 SFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCC 389 (635)
T ss_dssp EEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEEC
T ss_pred cccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhcccccccccc
Confidence 001222334555555554211 112222356677777776643211
Q ss_pred ---------------------cCC---CcCCCccEEecCCccceecC--ccccCCCCCCEEecCCCcccccccccccCCC
Q 044579 704 ---------------------EFP---KISGKITELNLCDTAIEEVP--SSVECLTNLKELYLSRCSTLNRLSTSICKLK 757 (1103)
Q Consensus 704 ---------------------~~~---~~~~~L~~L~L~~~~i~~lp--~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~ 757 (1103)
..+ ....+|+.+++..+.....+ ..+..+++|+.++++.|.+....|..+..++
T Consensus 390 ~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~ 469 (635)
T 4g8a_A 390 SQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 469 (635)
T ss_dssp CHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred ccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccch
Confidence 001 12346778888887776543 3578899999999999999998899999999
Q ss_pred CCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCccccC-ccccCCCCCC
Q 044579 758 SLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESLP-SSIKQLSQLR 836 (1103)
Q Consensus 758 ~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~lp-~~i~~l~~L~ 836 (1103)
+|+.|+|++|..... ..|..+..+++|++|+|++|.+.+.. +..+.++++|++|+|++|+|+.+| ..+..+++|+
T Consensus 470 ~L~~L~Ls~N~~~~~--~~~~~~~~l~~L~~L~Ls~N~L~~l~--~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~ 545 (635)
T 4g8a_A 470 SLEVLKMAGNSFQEN--FLPDIFTELRNLTFLDLSQCQLEQLS--PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 545 (635)
T ss_dssp TCCEEECTTCEEGGG--EECSCCTTCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCC
T ss_pred hhhhhhhhhcccccc--cCchhhhhccccCEEECCCCccCCcC--hHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCC
Confidence 999999999864433 26788999999999999999876555 456788999999999999999886 4579999999
Q ss_pred EEeccCCcCCcccCcccccc-ccceeccccccccc
Q 044579 837 KLDLSNCNMLLSLPELPLFL-EDLEARNCKRLQFL 870 (1103)
Q Consensus 837 ~L~L~~n~~l~~lp~~~~~L-~~L~~~~c~~l~~~ 870 (1103)
.|+|++|++.+..|..+..+ ..|..++..+|.+.
T Consensus 546 ~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 546 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp EEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred EEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 99999999999988877666 56777777777654
No 59
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.86 E-value=8e-22 Score=225.17 Aligned_cols=266 Identities=17% Similarity=0.148 Sum_probs=156.1
Q ss_pred EEEcCCCCCCCCCcccccccccccccccccccccc-ccccCCcceEecCCCCCCCccCCC-CCCCCCccEEEecCCCCCC
Q 044579 579 LHWHGYPLKTLPFDFELENLIELRLPYSKVEQIWE-GKKEASKLKSIDLCHSQHLIRMPD-LSEIPNLERTNFFNCTNLV 656 (1103)
Q Consensus 579 L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~-~~~~l~~L~~L~L~~~~~~~~~p~-l~~l~~L~~L~L~~~~~l~ 656 (1103)
.+.+++.++.+|..+. ++|++|+|++|+++.++. .+..+++|++|+|++|.+....|. +.++++|++|++++|...
T Consensus 36 c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~- 113 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLT-EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS- 113 (353)
T ss_dssp EECCSTTCSSCCTTCC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-
T ss_pred eeCCCCCccccccccc-ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-
Confidence 5566677777776543 477777777777777765 577777777777777776555443 777777777777776443
Q ss_pred cccc-cccCCCcccEEEccCCCCCcccCC--CC-CCCCCcEEEccCCcCCCcCCC----cCCCccEEecCCccceec-Cc
Q 044579 657 LVPS-SIQNFNNLSMLCFRGCESLRSFPR--DI-HFVSPVTIDFSFCVNLTEFPK----ISGKITELNLCDTAIEEV-PS 727 (1103)
Q Consensus 657 ~~~~-~i~~l~~L~~L~L~~~~~l~~lp~--~~-~l~~L~~L~l~~c~~l~~~~~----~~~~L~~L~L~~~~i~~l-p~ 727 (1103)
.+|. .++++++|++|++++| .+..+|. .+ .+++|++|++++|..+..++. ...+|++|++++|.+..+ |.
T Consensus 114 ~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 192 (353)
T 2z80_A 114 NLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK 192 (353)
T ss_dssp SCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred cCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHH
Confidence 3443 3677777777777775 3445554 22 566666666666644444321 123455666666666654 55
Q ss_pred cccCCCCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCC----CCCCC
Q 044579 728 SVECLTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLN----KLPHS 803 (1103)
Q Consensus 728 ~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~----~lp~~ 803 (1103)
.+..+++|++|++++|.+....+..+..+++|+.|++++|........-.......+.|+.++|+++.+.+ .+ +
T Consensus 193 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l--~ 270 (353)
T 2z80_A 193 SLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV--M 270 (353)
T ss_dssp TTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHH--H
T ss_pred HHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhh--H
Confidence 66666777777777666433222223456677777776654322100000112234556666666655432 12 1
Q ss_pred cccCCCCCCCEEeCCCCCccccCccc-cCCCCCCEEeccCCcCCccc
Q 044579 804 IDFCCLSSLQWLDLSGNNFESLPSSI-KQLSQLRKLDLSNCNMLLSL 849 (1103)
Q Consensus 804 ~~~~~l~~L~~L~Ls~n~l~~lp~~i-~~l~~L~~L~L~~n~~l~~l 849 (1103)
..+..+++|+.|+|++|+++.+|..+ ..+++|++|+|++|++....
T Consensus 271 ~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 271 KLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp HHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred HHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 22445666666666666666666553 56666666666666655443
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.85 E-value=2.1e-20 Score=220.88 Aligned_cols=242 Identities=23% Similarity=0.243 Sum_probs=141.6
Q ss_pred eEEEEEcCCCCCCCCCccccccccccccccccccccc-cccccCCcceEecCCCCCCCccCC-CCCCCCCccEEEecCCC
Q 044579 576 LRYLHWHGYPLKTLPFDFELENLIELRLPYSKVEQIW-EGKKEASKLKSIDLCHSQHLIRMP-DLSEIPNLERTNFFNCT 653 (1103)
Q Consensus 576 Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~-~~~~~l~~L~~L~L~~~~~~~~~p-~l~~l~~L~~L~L~~~~ 653 (1103)
.+.++..+..++.+|..+ .++|++|+|++|+++.++ ..+.++++|++|+|++|.+....+ .|.++++|++|+|++|.
T Consensus 56 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGI-PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp SCEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CcEEEECCCCcCccCCCC-CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 445666666777777654 357777777777777663 457777777777777777655544 37777777777777765
Q ss_pred CCCcccccccCCCcccEEEccCCCCCcccCCCC--CCCCCcEEEccCCcCCCcCCCcCCCccEEecCCccceecCccccC
Q 044579 654 NLVLVPSSIQNFNNLSMLCFRGCESLRSFPRDI--HFVSPVTIDFSFCVNLTEFPKISGKITELNLCDTAIEEVPSSVEC 731 (1103)
Q Consensus 654 ~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~--~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~~ 731 (1103)
.....+..+..+++|++|+|++|. +..+|... .+++|+.|++++|+.+..++.. .+..
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~-------------------~~~~ 194 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEG-------------------AFEG 194 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTT-------------------TTTT
T ss_pred CCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChh-------------------hccC
Confidence 444344457777778888877754 44555422 5666666666666555444321 2344
Q ss_pred CCCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcccCCCCC
Q 044579 732 LTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSS 811 (1103)
Q Consensus 732 l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~ 811 (1103)
+++|+.|+|++|.+.+ +| .+..+++|++|+|++|..... .|..+.++++|+.|+|++|.+.... +..+..+++
T Consensus 195 l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~---~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~ 267 (452)
T 3zyi_A 195 LFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEI---RPGSFHGLSSLKKLWVMNSQVSLIE--RNAFDGLAS 267 (452)
T ss_dssp CTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEE---CGGGGTTCTTCCEEECTTSCCCEEC--TTTTTTCTT
T ss_pred CCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCccc---CcccccCccCCCEEEeCCCcCceEC--HHHhcCCCC
Confidence 4455555555544332 22 244455555555555432221 2444555555555555555544333 233455666
Q ss_pred CCEEeCCCCCccccCcc-ccCCCCCCEEeccCCcC
Q 044579 812 LQWLDLSGNNFESLPSS-IKQLSQLRKLDLSNCNM 845 (1103)
Q Consensus 812 L~~L~Ls~n~l~~lp~~-i~~l~~L~~L~L~~n~~ 845 (1103)
|+.|+|++|+++.+|.. +..+++|+.|+|++|++
T Consensus 268 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 268 LVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp CCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred CCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 66666666666666533 45666777777776654
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.85 E-value=2.4e-21 Score=216.58 Aligned_cols=245 Identities=18% Similarity=0.220 Sum_probs=148.1
Q ss_pred EEEEcCCCCCCCCCccccccccccccccccccccccc-cccCCcceEecCCCCCCCcc---CCCCCCCCCccEEEecCCC
Q 044579 578 YLHWHGYPLKTLPFDFELENLIELRLPYSKVEQIWEG-KKEASKLKSIDLCHSQHLIR---MPDLSEIPNLERTNFFNCT 653 (1103)
Q Consensus 578 ~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~-~~~l~~L~~L~L~~~~~~~~---~p~l~~l~~L~~L~L~~~~ 653 (1103)
.++++++.++.+|..+ .++|++|+|++|+++.+|.. +..+++|++|+|++|.+... .+.+..+++|++|++++|.
T Consensus 11 ~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~ 89 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89 (306)
T ss_dssp EEECCSSCCSSCCSCC-CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred EEEcCCCCcccCCCCC-CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc
Confidence 4455555566666543 24566666666666666544 45666666666666654322 1224455666666666653
Q ss_pred CCCcccccccCCCcccEEEccCCCCCcccCCCCCCCCCcEEEccCCcCCCcCCCcCCCccEEecCCccceec-CccccCC
Q 044579 654 NLVLVPSSIQNFNNLSMLCFRGCESLRSFPRDIHFVSPVTIDFSFCVNLTEFPKISGKITELNLCDTAIEEV-PSSVECL 732 (1103)
Q Consensus 654 ~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~L~~~~i~~l-p~~~~~l 732 (1103)
+..+|..+..+++|++|++++|. +..++... ......+|++|++++|.+..+ |..+..+
T Consensus 90 -i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~------------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 149 (306)
T 2z66_A 90 -VITMSSNFLGLEQLEHLDFQHSN-LKQMSEFS------------------VFLSLRNLIYLDISHTHTRVAFNGIFNGL 149 (306)
T ss_dssp -EEEEEEEEETCTTCCEEECTTSE-EESSTTTT------------------TTTTCTTCCEEECTTSCCEECSTTTTTTC
T ss_pred -cccChhhcCCCCCCCEEECCCCc-ccccccch------------------hhhhccCCCEEECCCCcCCccchhhcccC
Confidence 33455556666666666666643 22222100 001123445555555555533 3456677
Q ss_pred CCCCEEecCCCcccc-cccccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcccCCCCC
Q 044579 733 TNLKELYLSRCSTLN-RLSTSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSS 811 (1103)
Q Consensus 733 ~~L~~L~L~~~~~~~-~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~ 811 (1103)
++|+.|+|++|.+.+ .+|..+..+++|++|+|++|..... .|..+..+++|+.|+|++|.+.... +..+..+++
T Consensus 150 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~ 224 (306)
T 2z66_A 150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL---SPTAFNSLSSLQVLNMSHNNFFSLD--TFPYKCLNS 224 (306)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE---CTTTTTTCTTCCEEECTTSCCSBCC--SGGGTTCTT
T ss_pred cCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCc---CHHHhcCCCCCCEEECCCCccCccC--hhhccCccc
Confidence 777777777777665 5677777777888888877643322 3566777788888888887755433 334566788
Q ss_pred CCEEeCCCCCccc-cCccccCCC-CCCEEeccCCcCCcc
Q 044579 812 LQWLDLSGNNFES-LPSSIKQLS-QLRKLDLSNCNMLLS 848 (1103)
Q Consensus 812 L~~L~Ls~n~l~~-lp~~i~~l~-~L~~L~L~~n~~l~~ 848 (1103)
|+.|+|++|.++. .|..+..++ +|+.|+|++|++...
T Consensus 225 L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 225 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred CCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 8888888888874 455667774 788888888887654
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.85 E-value=2.3e-20 Score=219.76 Aligned_cols=242 Identities=21% Similarity=0.249 Sum_probs=145.9
Q ss_pred eEEEEEcCCCCCCCCCccccccccccccccccccccc-cccccCCcceEecCCCCCCCccCC-CCCCCCCccEEEecCCC
Q 044579 576 LRYLHWHGYPLKTLPFDFELENLIELRLPYSKVEQIW-EGKKEASKLKSIDLCHSQHLIRMP-DLSEIPNLERTNFFNCT 653 (1103)
Q Consensus 576 Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~-~~~~~l~~L~~L~L~~~~~~~~~p-~l~~l~~L~~L~L~~~~ 653 (1103)
.+.++..+..++.+|..+. ++++.|+|++|+++.++ ..+.++++|++|+|++|.+....+ .|.++++|++|+|++|.
T Consensus 45 ~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS-TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC-TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred CCEEEeCCCCcCcCCCCCC-CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 4556666677777776553 56777777777777665 457777777777777776554443 36777777777777764
Q ss_pred CCCcccccccCCCcccEEEccCCCCCcccCCC-C-CCCCCcEEEccCCcCCCcCCCcCCCccEEecCCccceecCccccC
Q 044579 654 NLVLVPSSIQNFNNLSMLCFRGCESLRSFPRD-I-HFVSPVTIDFSFCVNLTEFPKISGKITELNLCDTAIEEVPSSVEC 731 (1103)
Q Consensus 654 ~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~-~-~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~~ 731 (1103)
.....+..+..+++|++|+|++|. +..+|.. + .+++|+.|++++|+.+..++. ..+.+
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~-------------------~~~~~ 183 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISE-------------------GAFEG 183 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECT-------------------TTTTT
T ss_pred CCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCc-------------------chhhc
Confidence 443333467777777777777754 4444442 2 556666666665544443332 13445
Q ss_pred CCCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcccCCCCC
Q 044579 732 LTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSS 811 (1103)
Q Consensus 732 l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~ 811 (1103)
+++|+.|+|++|.+. .+| .+..+++|++|+|++|..... .|..+.++++|+.|+|++|.+.... +..+..+++
T Consensus 184 l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~---~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~ 256 (440)
T 3zyj_A 184 LSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAI---RPGSFQGLMHLQKLWMIQSQIQVIE--RNAFDNLQS 256 (440)
T ss_dssp CSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEE---CTTTTTTCTTCCEEECTTCCCCEEC--TTSSTTCTT
T ss_pred ccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCcc---ChhhhccCccCCEEECCCCceeEEC--hhhhcCCCC
Confidence 555555555555433 333 255555666666665532221 3455566666666666666544333 334556677
Q ss_pred CCEEeCCCCCccccCcc-ccCCCCCCEEeccCCcC
Q 044579 812 LQWLDLSGNNFESLPSS-IKQLSQLRKLDLSNCNM 845 (1103)
Q Consensus 812 L~~L~Ls~n~l~~lp~~-i~~l~~L~~L~L~~n~~ 845 (1103)
|+.|+|++|+++.+|.. +..+++|+.|+|++|++
T Consensus 257 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 257 LVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred CCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 77777777777766643 46677777777777764
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.84 E-value=1.7e-21 Score=218.73 Aligned_cols=237 Identities=14% Similarity=0.108 Sum_probs=164.5
Q ss_pred cccccccccccccccccc-cccccCCcceEecCCCCCCCccCCCCCCCCCccEEEecCCCCCCcccccccCCCcccEEEc
Q 044579 595 LENLIELRLPYSKVEQIW-EGKKEASKLKSIDLCHSQHLIRMPDLSEIPNLERTNFFNCTNLVLVPSSIQNFNNLSMLCF 673 (1103)
Q Consensus 595 l~~L~~L~L~~n~i~~l~-~~~~~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L 673 (1103)
+++|++|+|++|+++.++ ..+..+++|++|+|++|.+....+ +..+++|++|++++|.
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-------------------- 91 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-------------------- 91 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE--------------------
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc--------------------
Confidence 445555666655555443 345555555555555555433222 5555555555555543
Q ss_pred cCCCCCcccCCCCCCCCCcEEEccCCcCCCcCCCcCCCccEEecCCccceecCc-cccCCCCCCEEecCCCccccccccc
Q 044579 674 RGCESLRSFPRDIHFVSPVTIDFSFCVNLTEFPKISGKITELNLCDTAIEEVPS-SVECLTNLKELYLSRCSTLNRLSTS 752 (1103)
Q Consensus 674 ~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~~ 752 (1103)
+..+| ..++|++|++++|......+..+.+|++|++++|.+..++. .+..+++|+.|+|++|.+.+..|..
T Consensus 92 -----l~~l~---~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 163 (317)
T 3o53_A 92 -----VQELL---VGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163 (317)
T ss_dssp -----EEEEE---ECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGG
T ss_pred -----ccccc---CCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHH
Confidence 22222 12444444444443222223345678999999999998755 7888999999999999988877777
Q ss_pred c-cCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCccccCccccC
Q 044579 753 I-CKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESLPSSIKQ 831 (1103)
Q Consensus 753 l-~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~lp~~i~~ 831 (1103)
+ ..+++|++|+|++|... .+|. ...+++|++|+|++|.+. .+| ..+..+++|+.|+|++|.++.+|..+..
T Consensus 164 ~~~~l~~L~~L~L~~N~l~----~~~~-~~~l~~L~~L~Ls~N~l~-~l~--~~~~~l~~L~~L~L~~N~l~~l~~~~~~ 235 (317)
T 3o53_A 164 LAASSDTLEHLNLQYNFIY----DVKG-QVVFAKLKTLDLSSNKLA-FMG--PEFQSAAGVTWISLRNNKLVLIEKALRF 235 (317)
T ss_dssp GGGGTTTCCEEECTTSCCC----EEEC-CCCCTTCCEEECCSSCCC-EEC--GGGGGGTTCSEEECTTSCCCEECTTCCC
T ss_pred HhhccCcCCEEECCCCcCc----cccc-ccccccCCEEECCCCcCC-cch--hhhcccCcccEEECcCCcccchhhHhhc
Confidence 6 47999999999997532 2433 335899999999999865 443 2367899999999999999999999999
Q ss_pred CCCCCEEeccCCcCC-cccCccccccccceeccccccc
Q 044579 832 LSQLRKLDLSNCNML-LSLPELPLFLEDLEARNCKRLQ 868 (1103)
Q Consensus 832 l~~L~~L~L~~n~~l-~~lp~~~~~L~~L~~~~c~~l~ 868 (1103)
+++|+.|+|++|++. +.+|..+..+..|...++..+.
T Consensus 236 l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273 (317)
T ss_dssp CTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCCCEEEccCCCccCcCHHHHHhccccceEEECCCch
Confidence 999999999999988 6777777777777766666443
No 64
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.84 E-value=3e-23 Score=246.50 Aligned_cols=345 Identities=17% Similarity=0.123 Sum_probs=234.2
Q ss_pred cccCCCCcceeechH-hhhcCcccceEEEecCCCCCccccCcceecCCCcccCCCceEEEEEcCCCCCCCCC-cc--ccc
Q 044579 521 FLDLSKTKDIHLSSQ-AFANMSNLRLLKFYMPERGGVPIMSSKVHLDQGLEDLPEKLRYLHWHGYPLKTLPF-DF--ELE 596 (1103)
Q Consensus 521 ~L~l~~~~~~~~~~~-~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~-~~--~l~ 596 (1103)
.||++.+........ .|..+++|+.|++++|.+.+. ....++..+..++ +|++|++++|.+..... .+ .+.
T Consensus 7 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~----~~~~l~~~l~~~~-~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 7 SLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEA----RCKDISSALRVNP-ALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHH----HHHHHHHHHHTCT-TCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHH----HHHHHHHHHHhCC-CcCEEeCCCCcCChHHHHHHHHHHh
Confidence 456666554444333 388899999999999876421 1113344455555 79999999998765321 11 244
Q ss_pred ----ccccccccccccc-----ccccccccCCcceEecCCCCCCCccCCC------CCCCCCccEEEecCCCCCCc----
Q 044579 597 ----NLIELRLPYSKVE-----QIWEGKKEASKLKSIDLCHSQHLIRMPD------LSEIPNLERTNFFNCTNLVL---- 657 (1103)
Q Consensus 597 ----~L~~L~L~~n~i~-----~l~~~~~~l~~L~~L~L~~~~~~~~~p~------l~~l~~L~~L~L~~~~~l~~---- 657 (1103)
+|++|+|++|.+. .++..+..+++|++|+|++|.+....+. ....++|++|++++|.....
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 7999999999988 4677888999999999999985432221 33467899999999865542
Q ss_pred ccccccCCCcccEEEccCCCCCcccCCCC------CCCCCcEEEccCCcCCCc----CCC---cCCCccEEecCCcccee
Q 044579 658 VPSSIQNFNNLSMLCFRGCESLRSFPRDI------HFVSPVTIDFSFCVNLTE----FPK---ISGKITELNLCDTAIEE 724 (1103)
Q Consensus 658 ~~~~i~~l~~L~~L~L~~~~~l~~lp~~~------~l~~L~~L~l~~c~~l~~----~~~---~~~~L~~L~L~~~~i~~ 724 (1103)
++..+..+++|++|++++|......+..+ ..++|+.|++++|..-.. ++. ...+|++|++++|.+..
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 45667788999999999976322212111 356899999999853321 233 34689999999998874
Q ss_pred c------CccccCCCCCCEEecCCCccccc----ccccccCCCCCcEEeecCCCCCCc-cccCCccc-cCCCCCCeeecc
Q 044579 725 V------PSSVECLTNLKELYLSRCSTLNR----LSTSICKLKSLHELILSDCLSLET-ITELPSSF-ANLEGLEKLVLV 792 (1103)
Q Consensus 725 l------p~~~~~l~~L~~L~L~~~~~~~~----lp~~l~~l~~L~~L~L~~~~~l~~-i~~lp~~~-~~l~~L~~L~L~ 792 (1103)
. +..+..+++|++|+|++|.+... ++..+..+++|++|+|++|..... ...+...+ ...++|+.|+|+
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 321 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence 3 22334688999999999977654 677788899999999999753211 00111112 223689999999
Q ss_pred CCCCCCCCC--CCcccCCCCCCCEEeCCCCCcccc-C----ccccC-CCCCCEEeccCCcCCc----ccCccccccccce
Q 044579 793 GCSKLNKLP--HSIDFCCLSSLQWLDLSGNNFESL-P----SSIKQ-LSQLRKLDLSNCNMLL----SLPELPLFLEDLE 860 (1103)
Q Consensus 793 ~~~~~~~lp--~~~~~~~l~~L~~L~Ls~n~l~~l-p----~~i~~-l~~L~~L~L~~n~~l~----~lp~~~~~L~~L~ 860 (1103)
+|.+..... -+..+..+++|++|+|++|.++.. + ..+.. .++|+.|+|++|.+.. .+|..+..++.|.
T Consensus 322 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~ 401 (461)
T 1z7x_W 322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR 401 (461)
T ss_dssp TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred CCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCcc
Confidence 998654310 022345578999999999988743 2 22322 6799999999998775 6777666666677
Q ss_pred eccccccccc
Q 044579 861 ARNCKRLQFL 870 (1103)
Q Consensus 861 ~~~c~~l~~~ 870 (1103)
.+++++|.+.
T Consensus 402 ~L~l~~N~i~ 411 (461)
T 1z7x_W 402 ELDLSNNCLG 411 (461)
T ss_dssp EEECCSSSCC
T ss_pred EEECCCCCCC
Confidence 7777777654
No 65
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.83 E-value=3.4e-20 Score=207.13 Aligned_cols=247 Identities=21% Similarity=0.179 Sum_probs=197.1
Q ss_pred cccccccccccccccccccCCcceEecCCCCCCCccCCC-CCCCCCccEEEecCCCCCC--cccccccCCCcccEEEccC
Q 044579 599 IELRLPYSKVEQIWEGKKEASKLKSIDLCHSQHLIRMPD-LSEIPNLERTNFFNCTNLV--LVPSSIQNFNNLSMLCFRG 675 (1103)
Q Consensus 599 ~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~p~-l~~l~~L~~L~L~~~~~l~--~~~~~i~~l~~L~~L~L~~ 675 (1103)
+.++++++.++.+|..+. ++|++|+|++|.+....+. |.++++|++|++++|.... ..+..+..+++|++|++++
T Consensus 10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred CEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 567888899999998664 6899999999986543333 7899999999999875432 2356677789999999988
Q ss_pred CCCCcccCCCCCCCCCcEEEccCCcCCCcCCCcCCCccEEecCCccceecCc--cccCCCCCCEEecCCCcccccccccc
Q 044579 676 CESLRSFPRDIHFVSPVTIDFSFCVNLTEFPKISGKITELNLCDTAIEEVPS--SVECLTNLKELYLSRCSTLNRLSTSI 753 (1103)
Q Consensus 676 ~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~--~~~~l~~L~~L~L~~~~~~~~lp~~l 753 (1103)
|. +..+|..+ ....+|++|++++|.+..++. .+..+++|+.|++++|.+.+..|..+
T Consensus 88 n~-i~~l~~~~--------------------~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 146 (306)
T 2z66_A 88 NG-VITMSSNF--------------------LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146 (306)
T ss_dssp CS-EEEEEEEE--------------------ETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTT
T ss_pred Cc-cccChhhc--------------------CCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhc
Confidence 64 33344322 113467777788888887764 68999999999999999988888889
Q ss_pred cCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCccccCc-cccCC
Q 044579 754 CKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESLPS-SIKQL 832 (1103)
Q Consensus 754 ~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~lp~-~i~~l 832 (1103)
..+++|++|++++|..... .+|..+..+++|++|+|++|.+.... +..+..+++|+.|+|++|.++.++. .+..+
T Consensus 147 ~~l~~L~~L~l~~n~l~~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 222 (306)
T 2z66_A 147 NGLSSLEVLKMAGNSFQEN--FLPDIFTELRNLTFLDLSQCQLEQLS--PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 222 (306)
T ss_dssp TTCTTCCEEECTTCEEGGG--EECSCCTTCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTTSCCSBCCSGGGTTC
T ss_pred ccCcCCCEEECCCCccccc--cchhHHhhCcCCCEEECCCCCcCCcC--HHHhcCCCCCCEEECCCCccCccChhhccCc
Confidence 9999999999999754321 26888999999999999999876654 3456789999999999999998875 67899
Q ss_pred CCCCEEeccCCcCCcccCcccccc-ccceecccccccccCC
Q 044579 833 SQLRKLDLSNCNMLLSLPELPLFL-EDLEARNCKRLQFLPE 872 (1103)
Q Consensus 833 ~~L~~L~L~~n~~l~~lp~~~~~L-~~L~~~~c~~l~~~~~ 872 (1103)
++|+.|+|++|++.+..|..+..+ ..|..+++.+|.+.+.
T Consensus 223 ~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 223 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp TTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred ccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 999999999999999888877666 4777778888887654
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.83 E-value=3.9e-20 Score=204.33 Aligned_cols=221 Identities=19% Similarity=0.222 Sum_probs=122.0
Q ss_pred EEEEEcCCCCCCCCCcccccccccccccccccccccc-ccccCCcceEecCCCCCCCccCC-CCCCCCCccEEEecCCCC
Q 044579 577 RYLHWHGYPLKTLPFDFELENLIELRLPYSKVEQIWE-GKKEASKLKSIDLCHSQHLIRMP-DLSEIPNLERTNFFNCTN 654 (1103)
Q Consensus 577 r~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~-~~~~l~~L~~L~L~~~~~~~~~p-~l~~l~~L~~L~L~~~~~ 654 (1103)
+.++.+++.++.+|..+ +++|++|+|++|.++.++. .+..+++|++|+|++|.+....| .+..+++|++|++++|..
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp CEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred eEEEcCcCCcccCCcCC-CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 56677777777777654 4677777777777777663 46777777777777776554434 366677777777777654
Q ss_pred CCcc-cccccCCCcccEEEccCCCCCcccCCCCCCCCCcEEEccCCcCCCcCCCcCCCccEEecCCccceecCccccCCC
Q 044579 655 LVLV-PSSIQNFNNLSMLCFRGCESLRSFPRDIHFVSPVTIDFSFCVNLTEFPKISGKITELNLCDTAIEEVPSSVECLT 733 (1103)
Q Consensus 655 l~~~-~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~ 733 (1103)
+..+ |..+..+++|++|++++|...... |..+..++
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------------------------------------------~~~~~~l~ 129 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCGLQELG-------------------------------------------PGLFRGLA 129 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCC-------------------------------------------TTTTTTCT
T ss_pred ccccCHHHhcCCcCCCEEECCCCcCCEEC-------------------------------------------HhHhhCCc
Confidence 4444 455666666666666664322111 22234444
Q ss_pred CCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccccCCc-cccCCCCCCeeeccCCCCCCCCCCCcccCCCCCC
Q 044579 734 NLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELPS-SFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSL 812 (1103)
Q Consensus 734 ~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L 812 (1103)
+|++|+|++|.+.+..+..+..+++|++|+|++|.. ..+|. .+..+++|+.|+|++|.+.... +..+..+++|
T Consensus 130 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l----~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L 203 (285)
T 1ozn_A 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI----SSVPERAFRGLHSLDRLLLHQNRVAHVH--PHAFRDLGRL 203 (285)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC----CEECTTTTTTCTTCCEEECCSSCCCEEC--TTTTTTCTTC
T ss_pred CCCEEECCCCcccccCHhHhccCCCccEEECCCCcc----cccCHHHhcCccccCEEECCCCcccccC--HhHccCcccc
Confidence 444444444444433333344445555555544321 11222 2444555555555555544333 2234445556
Q ss_pred CEEeCCCCCccccCc-cccCCCCCCEEeccCCcCCc
Q 044579 813 QWLDLSGNNFESLPS-SIKQLSQLRKLDLSNCNMLL 847 (1103)
Q Consensus 813 ~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~n~~l~ 847 (1103)
+.|+|++|.++.+|. .+..+++|+.|+|++|++..
T Consensus 204 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 204 MTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred cEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 666666665555553 35555666666666665543
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.83 E-value=7.9e-20 Score=201.89 Aligned_cols=225 Identities=21% Similarity=0.207 Sum_probs=171.2
Q ss_pred cccccccccccccccccccCCcceEecCCCCCCCccCCC-CCCCCCccEEEecCCCCCCcccccccCCCcccEEEccCCC
Q 044579 599 IELRLPYSKVEQIWEGKKEASKLKSIDLCHSQHLIRMPD-LSEIPNLERTNFFNCTNLVLVPSSIQNFNNLSMLCFRGCE 677 (1103)
Q Consensus 599 ~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~p~-l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~~~ 677 (1103)
++++.+++.++.+|.++ .++|++|+|++|.+....+. +..+++|++|++++|......|..+..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 56777778888777654 46788888888776554443 6777777777777765444445666666666666666653
Q ss_pred CCcccCCCCCCCCCcEEEccCCcCCCcCCCcCCCccEEecCCccceecCccccCCCCCCEEecCCCcccccccccccCCC
Q 044579 678 SLRSFPRDIHFVSPVTIDFSFCVNLTEFPKISGKITELNLCDTAIEEVPSSVECLTNLKELYLSRCSTLNRLSTSICKLK 757 (1103)
Q Consensus 678 ~l~~lp~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~ 757 (1103)
.+..++ |..+..+++|++|+|++|.+.+..|..+.+++
T Consensus 92 ~l~~~~------------------------------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 129 (285)
T 1ozn_A 92 QLRSVD------------------------------------------PATFHGLGRLHTLHLDRCGLQELGPGLFRGLA 129 (285)
T ss_dssp TCCCCC------------------------------------------TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred CccccC------------------------------------------HHHhcCCcCCCEEECCCCcCCEECHhHhhCCc
Confidence 232221 34577789999999999998888888899999
Q ss_pred CCcEEeecCCCCCCccccCC-ccccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCcccc-CccccCCCCC
Q 044579 758 SLHELILSDCLSLETITELP-SSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESL-PSSIKQLSQL 835 (1103)
Q Consensus 758 ~L~~L~L~~~~~l~~i~~lp-~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~l-p~~i~~l~~L 835 (1103)
+|++|++++|... .+| ..+..+++|+.|+|++|.+.. ++ +..+..+++|+.|+|++|.++.+ |..+..+++|
T Consensus 130 ~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~-~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 203 (285)
T 1ozn_A 130 ALQYLYLQDNALQ----ALPDDTFRDLGNLTHLFLHGNRISS-VP-ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203 (285)
T ss_dssp TCCEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCCE-EC-TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred CCCEEECCCCccc----ccCHhHhccCCCccEEECCCCcccc-cC-HHHhcCccccCEEECCCCcccccCHhHccCcccc
Confidence 9999999997543 344 458899999999999998653 43 34467899999999999999976 7889999999
Q ss_pred CEEeccCCcCCcccCccccccccceecccccccccCCC
Q 044579 836 RKLDLSNCNMLLSLPELPLFLEDLEARNCKRLQFLPEI 873 (1103)
Q Consensus 836 ~~L~L~~n~~l~~lp~~~~~L~~L~~~~c~~l~~~~~~ 873 (1103)
+.|+|++|++.+..+..+..+..|..+++.+|.+....
T Consensus 204 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~ 241 (285)
T 1ozn_A 204 MTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC 241 (285)
T ss_dssp CEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred cEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCC
Confidence 99999999988766666777888888888888876543
No 68
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.82 E-value=1.1e-22 Score=241.64 Aligned_cols=341 Identities=19% Similarity=0.131 Sum_probs=239.9
Q ss_pred ccCCCCcceee----chHhhhcCcccceEEEecCCCCCccccCcceecCCCcccCCCceEEEEEcCCCCCC-----CCCc
Q 044579 522 LDLSKTKDIHL----SSQAFANMSNLRLLKFYMPERGGVPIMSSKVHLDQGLEDLPEKLRYLHWHGYPLKT-----LPFD 592 (1103)
Q Consensus 522 L~l~~~~~~~~----~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~-----lp~~ 592 (1103)
++++++..... -+.+|..+++|++|++++|.+.+. ....+...+.....+|++|++++|.+.. +|..
T Consensus 33 L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~----~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~ 108 (461)
T 1z7x_W 33 VRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDV----GVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST 108 (461)
T ss_dssp EEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHH----HHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred EEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChH----HHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHH
Confidence 45555543322 245688899999999999866321 0111122222222379999999999884 4555
Q ss_pred c-cccccccccccccccccc-----ccc-cccCCcceEecCCCCCCCccC----C-CCCCCCCccEEEecCCCCCCcccc
Q 044579 593 F-ELENLIELRLPYSKVEQI-----WEG-KKEASKLKSIDLCHSQHLIRM----P-DLSEIPNLERTNFFNCTNLVLVPS 660 (1103)
Q Consensus 593 ~-~l~~L~~L~L~~n~i~~l-----~~~-~~~l~~L~~L~L~~~~~~~~~----p-~l~~l~~L~~L~L~~~~~l~~~~~ 660 (1103)
+ .+++|++|+|++|.+... ... ....++|++|+|++|.+.... + .+..+++|++|++++|......+.
T Consensus 109 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 188 (461)
T 1z7x_W 109 LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVR 188 (461)
T ss_dssp TTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHH
Confidence 5 788999999999998742 222 233678999999999865432 2 256789999999999874333233
Q ss_pred ccc-----CCCcccEEEccCCCCCcc----cCCCC-CCCCCcEEEccCCcCCCc-----C----CCcCCCccEEecCCcc
Q 044579 661 SIQ-----NFNNLSMLCFRGCESLRS----FPRDI-HFVSPVTIDFSFCVNLTE-----F----PKISGKITELNLCDTA 721 (1103)
Q Consensus 661 ~i~-----~l~~L~~L~L~~~~~l~~----lp~~~-~l~~L~~L~l~~c~~l~~-----~----~~~~~~L~~L~L~~~~ 721 (1103)
.+. .+++|+.|++++|..-.. ++..+ .+++|++|++++|. +.. + .....+|++|++++|.
T Consensus 189 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n~ 267 (461)
T 1z7x_W 189 VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWECG 267 (461)
T ss_dssp HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECcCCC
Confidence 332 366999999999854332 34434 67899999999984 322 1 1235689999999999
Q ss_pred cee-----cCccccCCCCCCEEecCCCcccccccccccC-----CCCCcEEeecCCCCCCc-cccCCccccCCCCCCeee
Q 044579 722 IEE-----VPSSVECLTNLKELYLSRCSTLNRLSTSICK-----LKSLHELILSDCLSLET-ITELPSSFANLEGLEKLV 790 (1103)
Q Consensus 722 i~~-----lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~-----l~~L~~L~L~~~~~l~~-i~~lp~~~~~l~~L~~L~ 790 (1103)
++. ++..+..+++|++|+|++|.+....+..+.. .++|++|+|++|..... ...++..+..+++|+.|+
T Consensus 268 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 347 (461)
T 1z7x_W 268 ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQ 347 (461)
T ss_dssp CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEE
T ss_pred CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEE
Confidence 986 7888889999999999999876554444432 37999999999864322 122566778889999999
Q ss_pred ccCCCCCCCCCCC--cccC-CCCCCCEEeCCCCCcc-----ccCccccCCCCCCEEeccCCcCCcc--------cCcccc
Q 044579 791 LVGCSKLNKLPHS--IDFC-CLSSLQWLDLSGNNFE-----SLPSSIKQLSQLRKLDLSNCNMLLS--------LPELPL 854 (1103)
Q Consensus 791 L~~~~~~~~lp~~--~~~~-~l~~L~~L~Ls~n~l~-----~lp~~i~~l~~L~~L~L~~n~~l~~--------lp~~~~ 854 (1103)
|++|.+....+.. ..+. ..++|++|+|++|.++ .+|..+..+++|++|+|++|++... +|....
T Consensus 348 Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~ 427 (461)
T 1z7x_W 348 ISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 427 (461)
T ss_dssp CCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTC
T ss_pred ccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCc
Confidence 9999765432110 1111 2679999999999999 6888899999999999999997654 444445
Q ss_pred ccccceecccccc
Q 044579 855 FLEDLEARNCKRL 867 (1103)
Q Consensus 855 ~L~~L~~~~c~~l 867 (1103)
.|+.|.+.++..+
T Consensus 428 ~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 428 LLEQLVLYDIYWS 440 (461)
T ss_dssp CCCEEECTTCCCC
T ss_pred chhheeecccccC
Confidence 6777777666544
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.82 E-value=1.4e-20 Score=223.62 Aligned_cols=234 Identities=14% Similarity=0.100 Sum_probs=165.6
Q ss_pred cccccccccccccccccc-cccccCCcceEecCCCCCCCccCCCCCCCCCccEEEecCCCCCCcccccccCCCcccEEEc
Q 044579 595 LENLIELRLPYSKVEQIW-EGKKEASKLKSIDLCHSQHLIRMPDLSEIPNLERTNFFNCTNLVLVPSSIQNFNNLSMLCF 673 (1103)
Q Consensus 595 l~~L~~L~L~~n~i~~l~-~~~~~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L 673 (1103)
+++|++|+|++|.+..++ ..+..+++|++|+|++|.+....| +..+++|++|+|++|. +..+| ..++|+.|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~----~~~~L~~L~L 106 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL----VGPSIETLHA 106 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEE----ECTTCCEEEC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCC----CCCCcCEEEC
Confidence 336666666666666554 356666666666666665443333 5566666666666543 22222 1245555555
Q ss_pred cCCCCCcccCCCCCCCCCcEEEccCCcCCCcCCCcCCCccEEecCCccceec-CccccCCCCCCEEecCCCccccccccc
Q 044579 674 RGCESLRSFPRDIHFVSPVTIDFSFCVNLTEFPKISGKITELNLCDTAIEEV-PSSVECLTNLKELYLSRCSTLNRLSTS 752 (1103)
Q Consensus 674 ~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~~lp~~ 752 (1103)
++| ......+..+.+|+.|+|++|.+..+ |..++++++|+.|+|++|.+.+..|..
T Consensus 107 ~~N-----------------------~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 163 (487)
T 3oja_A 107 ANN-----------------------NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163 (487)
T ss_dssp CSS-----------------------CCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGG
T ss_pred cCC-----------------------cCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHH
Confidence 554 32222233456788899999999876 557889999999999999999888888
Q ss_pred cc-CCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCccccCccccC
Q 044579 753 IC-KLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESLPSSIKQ 831 (1103)
Q Consensus 753 l~-~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~lp~~i~~ 831 (1103)
+. .+++|+.|+|++|... .+|. ...+++|+.|+|++|.+.+ +| ..+..+++|+.|+|++|.++.+|..+..
T Consensus 164 l~~~l~~L~~L~Ls~N~l~----~~~~-~~~l~~L~~L~Ls~N~l~~-~~--~~~~~l~~L~~L~Ls~N~l~~lp~~l~~ 235 (487)
T 3oja_A 164 LAASSDTLEHLNLQYNFIY----DVKG-QVVFAKLKTLDLSSNKLAF-MG--PEFQSAAGVTWISLRNNKLVLIEKALRF 235 (487)
T ss_dssp GGGGTTTCCEEECTTSCCC----EEEC-CCCCTTCCEEECCSSCCCE-EC--GGGGGGTTCSEEECTTSCCCEECTTCCC
T ss_pred HhhhCCcccEEecCCCccc----cccc-cccCCCCCEEECCCCCCCC-CC--HhHcCCCCccEEEecCCcCcccchhhcc
Confidence 76 7999999999997633 2333 3468999999999998664 43 2367889999999999999999999999
Q ss_pred CCCCCEEeccCCcCC-cccCccccccccceecccc
Q 044579 832 LSQLRKLDLSNCNML-LSLPELPLFLEDLEARNCK 865 (1103)
Q Consensus 832 l~~L~~L~L~~n~~l-~~lp~~~~~L~~L~~~~c~ 865 (1103)
+++|+.|++++|++. +.+|..+..+..|...++.
T Consensus 236 l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 999999999999987 6677666666666555553
No 70
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.82 E-value=3.1e-19 Score=210.17 Aligned_cols=225 Identities=19% Similarity=0.211 Sum_probs=177.7
Q ss_pred CCCceEEEEEcCCCCCCCCCc-c-ccccccccccccccccccc-cccccCCcceEecCCCCCCCccCCC-CCCCCCccEE
Q 044579 572 LPEKLRYLHWHGYPLKTLPFD-F-ELENLIELRLPYSKVEQIW-EGKKEASKLKSIDLCHSQHLIRMPD-LSEIPNLERT 647 (1103)
Q Consensus 572 l~~~Lr~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~i~~l~-~~~~~l~~L~~L~L~~~~~~~~~p~-l~~l~~L~~L 647 (1103)
++.+++.|++++|.++.++.. + .+++|++|+|++|.++.++ ..+..+++|++|+|++|.+....+. |..+++|++|
T Consensus 62 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 141 (440)
T 3zyj_A 62 ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKEL 141 (440)
T ss_dssp CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEE
T ss_pred CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCcee
Confidence 346899999999999988743 4 7899999999999999886 5688999999999999986655443 8999999999
Q ss_pred EecCCCCCCcccccccCCCcccEEEccCCCCCcccCCCC--CCCCCcEEEccCCcCCCcCCCcCCCccEEecCCccceec
Q 044579 648 NFFNCTNLVLVPSSIQNFNNLSMLCFRGCESLRSFPRDI--HFVSPVTIDFSFCVNLTEFPKISGKITELNLCDTAIEEV 725 (1103)
Q Consensus 648 ~L~~~~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~--~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~L~~~~i~~l 725 (1103)
+|++|......+..+.++++|+.|++++|+.+..++... .++ +|++|+|++|.++.+
T Consensus 142 ~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~---------------------~L~~L~L~~n~l~~~ 200 (440)
T 3zyj_A 142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS---------------------NLRYLNLAMCNLREI 200 (440)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCS---------------------SCCEEECTTSCCSSC
T ss_pred eCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccc---------------------ccCeecCCCCcCccc
Confidence 999987555555688999999999999998888877632 344 455555555666666
Q ss_pred CccccCCCCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcc
Q 044579 726 PSSVECLTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSID 805 (1103)
Q Consensus 726 p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~ 805 (1103)
|. +..+++|+.|+|++|.+.+..|..|.++++|+.|+|++|..... .+..+.++++|+.|+|++|.+. .+| +..
T Consensus 201 ~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~~N~l~-~~~-~~~ 274 (440)
T 3zyj_A 201 PN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI---ERNAFDNLQSLVEINLAHNNLT-LLP-HDL 274 (440)
T ss_dssp CC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE---CTTSSTTCTTCCEEECTTSCCC-CCC-TTT
T ss_pred cc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEE---ChhhhcCCCCCCEEECCCCCCC-ccC-hhH
Confidence 63 67788888888888888877788888888999999988754333 4567788889999999988765 343 344
Q ss_pred cCCCCCCCEEeCCCCCcc
Q 044579 806 FCCLSSLQWLDLSGNNFE 823 (1103)
Q Consensus 806 ~~~l~~L~~L~Ls~n~l~ 823 (1103)
+..+++|+.|+|++|.+.
T Consensus 275 ~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 275 FTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TSSCTTCCEEECCSSCEE
T ss_pred hccccCCCEEEcCCCCcc
Confidence 677899999999998775
No 71
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.82 E-value=2.9e-19 Score=211.10 Aligned_cols=225 Identities=21% Similarity=0.215 Sum_probs=179.2
Q ss_pred CCCceEEEEEcCCCCCCCCCc-c-ccccccccccccccccccc-cccccCCcceEecCCCCCCCccCCC-CCCCCCccEE
Q 044579 572 LPEKLRYLHWHGYPLKTLPFD-F-ELENLIELRLPYSKVEQIW-EGKKEASKLKSIDLCHSQHLIRMPD-LSEIPNLERT 647 (1103)
Q Consensus 572 l~~~Lr~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~i~~l~-~~~~~l~~L~~L~L~~~~~~~~~p~-l~~l~~L~~L 647 (1103)
++.+|++|++++|.++.++.. + .+++|++|+|++|+++.++ ..+..+++|++|+|++|.+....+. |..+++|++|
T Consensus 73 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 152 (452)
T 3zyi_A 73 IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLREL 152 (452)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEE
T ss_pred CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEE
Confidence 456899999999999988543 4 7999999999999999876 5688999999999999987655554 8899999999
Q ss_pred EecCCCCCCcccccccCCCcccEEEccCCCCCcccCCCC--CCCCCcEEEccCCcCCCcCCCcCCCccEEecCCccceec
Q 044579 648 NFFNCTNLVLVPSSIQNFNNLSMLCFRGCESLRSFPRDI--HFVSPVTIDFSFCVNLTEFPKISGKITELNLCDTAIEEV 725 (1103)
Q Consensus 648 ~L~~~~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~--~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~L~~~~i~~l 725 (1103)
+|++|......+..+.++++|+.|++++|+.+..+|... .++ +|++|+|++|.+..+
T Consensus 153 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~---------------------~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 153 WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF---------------------NLKYLNLGMCNIKDM 211 (452)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCT---------------------TCCEEECTTSCCSSC
T ss_pred ECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCC---------------------CCCEEECCCCccccc
Confidence 999987554445578999999999999998888887642 344 455555555666666
Q ss_pred CccccCCCCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcc
Q 044579 726 PSSVECLTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSID 805 (1103)
Q Consensus 726 p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~ 805 (1103)
|. +..+++|+.|+|++|.+.+..|..|.++++|+.|+|++|..... .|..+..+++|+.|+|++|.+. .+| +..
T Consensus 212 ~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~~N~l~-~~~-~~~ 285 (452)
T 3zyi_A 212 PN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLI---ERNAFDGLASLVELNLAHNNLS-SLP-HDL 285 (452)
T ss_dssp CC-CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEE---CTTTTTTCTTCCEEECCSSCCS-CCC-TTS
T ss_pred cc-ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceE---CHHHhcCCCCCCEEECCCCcCC-ccC-hHH
Confidence 53 67788899999999888888888888999999999988754433 4667888899999999998765 443 344
Q ss_pred cCCCCCCCEEeCCCCCcc
Q 044579 806 FCCLSSLQWLDLSGNNFE 823 (1103)
Q Consensus 806 ~~~l~~L~~L~Ls~n~l~ 823 (1103)
+..+++|+.|+|++|.+.
T Consensus 286 ~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 286 FTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp STTCTTCCEEECCSSCEE
T ss_pred hccccCCCEEEccCCCcC
Confidence 677899999999998776
No 72
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.81 E-value=5e-20 Score=210.26 Aligned_cols=271 Identities=15% Similarity=0.075 Sum_probs=214.0
Q ss_pred cccccccccccccccccccccccCCcceEecCCCCCCCccCC-CCCCCCCccEEEecCCCCCCcccccccCCCcccEEEc
Q 044579 595 LENLIELRLPYSKVEQIWEGKKEASKLKSIDLCHSQHLIRMP-DLSEIPNLERTNFFNCTNLVLVPSSIQNFNNLSMLCF 673 (1103)
Q Consensus 595 l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~p-~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L 673 (1103)
++.....+++++.++.+|..+. ++|++|+|++|.+....+ .+.++++|++|++++|......|..+.++++|++|++
T Consensus 30 C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107 (353)
T ss_dssp ECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEEC
Confidence 4444557889999999998765 599999999999766555 4999999999999998666556778999999999999
Q ss_pred cCCCCCcccCCC-C-CCCCCcEEEccCCcCCCcCCC-----cCCCccEEecCCc-cceecC-ccccCCCCCCEEecCCCc
Q 044579 674 RGCESLRSFPRD-I-HFVSPVTIDFSFCVNLTEFPK-----ISGKITELNLCDT-AIEEVP-SSVECLTNLKELYLSRCS 744 (1103)
Q Consensus 674 ~~~~~l~~lp~~-~-~l~~L~~L~l~~c~~l~~~~~-----~~~~L~~L~L~~~-~i~~lp-~~~~~l~~L~~L~L~~~~ 744 (1103)
++| .+..+|.. + .+++|++|++++| .+..+|. ...+|++|++++| .+..++ ..+..+++|+.|++++|.
T Consensus 108 s~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 108 SYN-YLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp CSS-CCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred CCC-cCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 996 45567665 3 7899999999996 4555655 3568999999998 577774 578999999999999999
Q ss_pred ccccccccccCCCCCcEEeecCCCCCCccccCCcc-ccCCCCCCeeeccCCCCCCCCCCCc-ccCCCCCCCEEeCCCCCc
Q 044579 745 TLNRLSTSICKLKSLHELILSDCLSLETITELPSS-FANLEGLEKLVLVGCSKLNKLPHSI-DFCCLSSLQWLDLSGNNF 822 (1103)
Q Consensus 745 ~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~-~~~l~~L~~L~L~~~~~~~~lp~~~-~~~~l~~L~~L~Ls~n~l 822 (1103)
+.+..|..+..+++|++|++++|.. ..+|.. +..+++|+.|++++|.+....+... .....+.++.++|+++.+
T Consensus 186 l~~~~~~~l~~l~~L~~L~l~~n~l----~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l 261 (353)
T 2z80_A 186 LQSYEPKSLKSIQNVSHLILHMKQH----ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI 261 (353)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSCS----TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBC
T ss_pred cCccCHHHHhccccCCeecCCCCcc----ccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccc
Confidence 9888899999999999999999763 334544 4468999999999998765332111 123356788888888776
Q ss_pred c-----ccCccccCCCCCCEEeccCCcCCcccCcc-ccccccceecccccccccCCCC
Q 044579 823 E-----SLPSSIKQLSQLRKLDLSNCNMLLSLPEL-PLFLEDLEARNCKRLQFLPEIP 874 (1103)
Q Consensus 823 ~-----~lp~~i~~l~~L~~L~L~~n~~l~~lp~~-~~~L~~L~~~~c~~l~~~~~~p 874 (1103)
. .+|..+..+++|+.|+|++|++. .+|.. +..++.|...++.+|.+.+..|
T Consensus 262 ~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 262 TDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 6 57888999999999999999876 66654 5778888888888887776544
No 73
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.81 E-value=5.1e-21 Score=188.07 Aligned_cols=103 Identities=17% Similarity=0.332 Sum_probs=92.7
Q ss_pred CCCCCcccEEEcCccccccCchHHHHHHHHHhC--CCeEEeeCccccCCCcchHHHHHHHh-hcceEEEEecCCccCchh
Q 044579 4 SSSQSKYEVFLSFRGEDTRNGFTSHLAAALHRK--QIQFFIDDEELKKGDEISPALSNAIE-SSDISIIIFSKGYASSRW 80 (1103)
Q Consensus 4 ~~~~~~~dvfis~~~~d~~~~~~~~l~~~L~~~--g~~~~~d~~~~~~g~~~~~~~~~~i~-~s~~~i~v~S~~y~~s~w 80 (1103)
++..+.|||||||+++|. +||.+|+++|+++ |+++|+|++++.+|+.+.++|.+||+ +|+++|+|+|++|++|.|
T Consensus 11 ~~~~~~yDvFISys~~D~--~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~w 88 (160)
T 2js7_A 11 GHMPERFDAFICYCPSDI--QFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKE 88 (160)
T ss_dssp SCCTTCEEEEEECCGGGH--HHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHH
T ss_pred CCCCcceEEEEEcccccH--HHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHH
Confidence 344689999999999995 4999999999985 69999999999999999999999999 799999999999999999
Q ss_pred hHHHHHHHHHhh-hcCCcEEEEEEeeeCC
Q 044579 81 CLNELVKILDCK-KMNAQIVIPVFYQVDP 108 (1103)
Q Consensus 81 c~~El~~~~~~~-~~~~~~v~pif~~v~p 108 (1103)
|..|+..++.+. +..+++||||+|+.-+
T Consensus 89 c~~El~~a~~~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 89 CDFQTKFALSLSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp HHHHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred HHHHHHHHHHHHHccCCCEEEEEEEcccc
Confidence 999999999875 4445689999998753
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.81 E-value=1.9e-20 Score=209.62 Aligned_cols=154 Identities=23% Similarity=0.197 Sum_probs=80.5
Q ss_pred CccEEecCCccceecC-ccccCCCCCCEEecCCCccccc--ccccc--cCCCCCcEEeecCCCCCCccccCCc-cccCCC
Q 044579 711 KITELNLCDTAIEEVP-SSVECLTNLKELYLSRCSTLNR--LSTSI--CKLKSLHELILSDCLSLETITELPS-SFANLE 784 (1103)
Q Consensus 711 ~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~~~~~--lp~~l--~~l~~L~~L~L~~~~~l~~i~~lp~-~~~~l~ 784 (1103)
+|++|++++|.+..++ ..++.+++|+.|+|++|.+.+. +|..+ ..+++|++|+|++|... .+..++. .+.+++
T Consensus 150 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~~~~l~ 228 (312)
T 1wwl_A 150 GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME-TPSGVCSALAAARV 228 (312)
T ss_dssp TCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCC-CHHHHHHHHHHTTC
T ss_pred CCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCc-chHHHHHHHHhcCC
Confidence 3444444444444444 4555666666666666655443 22233 55666666666665322 1111221 223556
Q ss_pred CCCeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCccccCccccCCCCCCEEeccCCcCCcccCccccccccceeccc
Q 044579 785 GLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESLPSSIKQLSQLRKLDLSNCNMLLSLPELPLFLEDLEARNC 864 (1103)
Q Consensus 785 ~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~~~~c 864 (1103)
+|+.|+|++|.+.+..|. ..+..+++|+.|+|++|.++.+|..+. ++|+.|+|++|++.+. |. +..+..|..+++
T Consensus 229 ~L~~L~Ls~N~l~~~~~~-~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L 303 (312)
T 1wwl_A 229 QLQGLDLSHNSLRDAAGA-PSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSL 303 (312)
T ss_dssp CCSEEECTTSCCCSSCCC-SCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEEC
T ss_pred CCCEEECCCCcCCcccch-hhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEec
Confidence 666666666665444321 223345666666666666666665554 5666666666665443 44 555555555555
Q ss_pred cccccc
Q 044579 865 KRLQFL 870 (1103)
Q Consensus 865 ~~l~~~ 870 (1103)
.+|.+.
T Consensus 304 ~~N~l~ 309 (312)
T 1wwl_A 304 KGNPFL 309 (312)
T ss_dssp TTCTTT
T ss_pred cCCCCC
Confidence 555543
No 75
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.81 E-value=3.4e-21 Score=187.59 Aligned_cols=101 Identities=17% Similarity=0.337 Sum_probs=91.5
Q ss_pred CCCcccEEEcCccccccCchHHH-HHHHHHhC--CCeEEeeCccccCCCcchHHHHHHHhhcceEEEEecCCccCchhhH
Q 044579 6 SQSKYEVFLSFRGEDTRNGFTSH-LAAALHRK--QIQFFIDDEELKKGDEISPALSNAIESSDISIIIFSKGYASSRWCL 82 (1103)
Q Consensus 6 ~~~~~dvfis~~~~d~~~~~~~~-l~~~L~~~--g~~~~~d~~~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~wc~ 82 (1103)
..+.|||||||+++|+. ||.+ |+++|+++ |+++|+|++|+.+|+.+.++|.+||++|+++|+|+|++|++|.||+
T Consensus 2 ~~~~yDvFiSy~~~D~~--~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 2 RNIXYDAFVSYSERDAY--WVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp CSCCEEEEEECCGGGHH--HHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCccceEEEECCcccHH--HHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 35789999999999975 9997 99999987 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-hhcCCcEEEEEEee-eCC
Q 044579 83 NELVKILDC-KKMNAQIVIPVFYQ-VDP 108 (1103)
Q Consensus 83 ~El~~~~~~-~~~~~~~v~pif~~-v~p 108 (1103)
.|+..++.+ .+..+++||||||+ +++
T Consensus 80 ~El~~a~~~~~~~~~~~vIpv~~~~i~~ 107 (149)
T 1fyx_A 80 YELDFSHFRLFDENNDAAILILLEPIEK 107 (149)
T ss_dssp HHSCCSCCTTCGGGTTCCEEEESSCCCT
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecCCCh
Confidence 999998853 45567789999996 443
No 76
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.80 E-value=2.4e-20 Score=208.80 Aligned_cols=240 Identities=21% Similarity=0.160 Sum_probs=170.0
Q ss_pred ceEEEEEcCCCCCCCCCccccccccccccccccccc--cccccc-------cCCcceEecCCCCCCCccCCC-C--CCCC
Q 044579 575 KLRYLHWHGYPLKTLPFDFELENLIELRLPYSKVEQ--IWEGKK-------EASKLKSIDLCHSQHLIRMPD-L--SEIP 642 (1103)
Q Consensus 575 ~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~--l~~~~~-------~l~~L~~L~L~~~~~~~~~p~-l--~~l~ 642 (1103)
+|+.|++++|.+ .+|..+. ..|+.|+|++|.++. ++..+. ++++|++|+|++|.+...+|. + ..++
T Consensus 44 ~L~~l~l~~n~l-~~p~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~ 121 (312)
T 1wwl_A 44 SLEYLLKRVDTE-ADLGQFT-DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGP 121 (312)
T ss_dssp ECTTHHHHCCTT-CCCHHHH-HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSC
T ss_pred CceeEeeccccc-ccHHHHH-HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCC
Confidence 566667777777 6776542 238888888888864 454444 688888888888887766665 3 7888
Q ss_pred CccEEEecCCCCCCcccccccCC-----CcccEEEccCCCCCcccCCCC-CCCCCcEEEccCCcCCCcCCCcCCCccEEe
Q 044579 643 NLERTNFFNCTNLVLVPSSIQNF-----NNLSMLCFRGCESLRSFPRDI-HFVSPVTIDFSFCVNLTEFPKISGKITELN 716 (1103)
Q Consensus 643 ~L~~L~L~~~~~l~~~~~~i~~l-----~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~ 716 (1103)
+|++|++++|..... |..++.+ ++|++|++++|......|..+ .+++ |++|+
T Consensus 122 ~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~---------------------L~~L~ 179 (312)
T 1wwl_A 122 DLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA---------------------LSTLD 179 (312)
T ss_dssp CCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSS---------------------CCEEE
T ss_pred CccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCC---------------------CCEEE
Confidence 888888888765444 7777766 788888888865433332333 3444 45555
Q ss_pred cCCcccee---cCccc--cCCCCCCEEecCCCcccc--ccc-ccccCCCCCcEEeecCCCCCCccccCC-ccccCCCCCC
Q 044579 717 LCDTAIEE---VPSSV--ECLTNLKELYLSRCSTLN--RLS-TSICKLKSLHELILSDCLSLETITELP-SSFANLEGLE 787 (1103)
Q Consensus 717 L~~~~i~~---lp~~~--~~l~~L~~L~L~~~~~~~--~lp-~~l~~l~~L~~L~L~~~~~l~~i~~lp-~~~~~l~~L~ 787 (1103)
+++|.+.. +|..+ ..+++|++|+|++|.+.+ .++ ..+.++++|++|+|++|..... .| ..+..+++|+
T Consensus 180 Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~~~~~~~~l~~L~ 256 (312)
T 1wwl_A 180 LSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA---AGAPSCDWPSQLN 256 (312)
T ss_dssp CCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSS---CCCSCCCCCTTCC
T ss_pred CCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcc---cchhhhhhcCCCC
Confidence 55555432 33344 778889999999887763 233 3345788999999998754433 22 4456688999
Q ss_pred eeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCccccCccccCCCCCCEEeccCCcCCc
Q 044579 788 KLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESLPSSIKQLSQLRKLDLSNCNMLL 847 (1103)
Q Consensus 788 ~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~l~ 847 (1103)
+|+|++|.+. .+|... . ++|+.|+|++|+++.+|. +..+++|+.|+|++|++.+
T Consensus 257 ~L~Ls~N~l~-~ip~~~--~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 257 SLNLSFTGLK-QVPKGL--P--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EEECTTSCCS-SCCSSC--C--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTTC
T ss_pred EEECCCCccC-hhhhhc--c--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCCC
Confidence 9999999866 675432 2 899999999999999987 8999999999999998764
No 77
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.80 E-value=1.4e-20 Score=187.84 Aligned_cols=99 Identities=20% Similarity=0.391 Sum_probs=86.7
Q ss_pred CCCcccEEEcCccccccCchHHH-HHHHHHh--CCCeEEeeCccccCCCcchHHHHHHHhhcceEEEEecCCccCchhhH
Q 044579 6 SQSKYEVFLSFRGEDTRNGFTSH-LAAALHR--KQIQFFIDDEELKKGDEISPALSNAIESSDISIIIFSKGYASSRWCL 82 (1103)
Q Consensus 6 ~~~~~dvfis~~~~d~~~~~~~~-l~~~L~~--~g~~~~~d~~~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~wc~ 82 (1103)
..+.|||||||+++|+. ||.+ |+++|++ +|+++|+|++|+.+|+.+.++|.+||++|+++|+|+|++|++|.||+
T Consensus 32 ~~~~yDvFISys~~D~~--fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc~ 109 (178)
T 2j67_A 32 RNVRFHAFISYSEHDSL--WVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWCH 109 (178)
T ss_dssp CSCCEEEEEECCGGGHH--HHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTGGG
T ss_pred CCccceEEEECCCCCHH--HHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccchHH
Confidence 46799999999999975 9985 9999998 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh-hcCCcEEEEEEeee
Q 044579 83 NELVKILDCK-KMNAQIVIPVFYQV 106 (1103)
Q Consensus 83 ~El~~~~~~~-~~~~~~v~pif~~v 106 (1103)
.|+..++.+. +..+++||||||+-
T Consensus 110 ~El~~a~~~~~~~~~~~vIpV~~~~ 134 (178)
T 2j67_A 110 YEFYFAHHNLFHENSDHIILILLEP 134 (178)
T ss_dssp THHHHTTCC-------CEEEEESSC
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecC
Confidence 9999999654 55677899999974
No 78
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.79 E-value=5.7e-20 Score=180.44 Aligned_cols=102 Identities=20% Similarity=0.310 Sum_probs=90.3
Q ss_pred CcccEEEcCccccc---------cCchHHHHHH-HHH-hCCCeEEeeCccccCCCcchHHHHHHHhhcceEEEEecCCcc
Q 044579 8 SKYEVFLSFRGEDT---------RNGFTSHLAA-ALH-RKQIQFFIDDEELKKGDEISPALSNAIESSDISIIIFSKGYA 76 (1103)
Q Consensus 8 ~~~dvfis~~~~d~---------~~~~~~~l~~-~L~-~~g~~~~~d~~~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~ 76 (1103)
+.|||||||+++|+ +.+||.++.. +|+ ++|+++|+|++|+.+|+.+.++|.+||++||++|+|+|++|+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 47999999999997 3568888665 699 799999999999999999999999999999999999999997
Q ss_pred -CchhhHHHHHHHHHhh-hcCCcEEEEEEeeeCCc
Q 044579 77 -SSRWCLNELVKILDCK-KMNAQIVIPVFYQVDPS 109 (1103)
Q Consensus 77 -~s~wc~~El~~~~~~~-~~~~~~v~pif~~v~p~ 109 (1103)
+|.||..|+..++.+. +.+++.||||+|.-.+.
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~ 115 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELRG 115 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCS
T ss_pred hcChHHHHHHHHHHHHHHhcCCCEEEEEEeccccc
Confidence 9999999999999876 56678999999875543
No 79
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.78 E-value=2.1e-19 Score=201.55 Aligned_cols=216 Identities=16% Similarity=0.090 Sum_probs=160.5
Q ss_pred CCccEEEecCCCCCCcccccccCCCcccEEEccCCCCCcccCCCCCCCCCcEEEccCCcCCCcCCCcCCCccEEecCCcc
Q 044579 642 PNLERTNFFNCTNLVLVPSSIQNFNNLSMLCFRGCESLRSFPRDIHFVSPVTIDFSFCVNLTEFPKISGKITELNLCDTA 721 (1103)
Q Consensus 642 ~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~L~~~~ 721 (1103)
++|++|++++|......|..+..+++|++|++++|.... .+....+++|++|++++|. +..++.. .+|++|++++|.
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~l~~L~~L~Ls~n~-l~~l~~~-~~L~~L~l~~n~ 110 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-TLDLESLSTLRTLDLNNNY-VQELLVG-PSIETLHAANNN 110 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE-EEEETTCTTCCEEECCSSE-EEEEEEC-TTCCEEECCSSC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc-chhhhhcCCCCEEECcCCc-cccccCC-CCcCEEECCCCc
Confidence 344444444443333333455555666666665543322 2222366778888888864 4555533 789999999999
Q ss_pred ceecCccccCCCCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccccCCccc-cCCCCCCeeeccCCCCCCCC
Q 044579 722 IEEVPSSVECLTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELPSSF-ANLEGLEKLVLVGCSKLNKL 800 (1103)
Q Consensus 722 i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~-~~l~~L~~L~L~~~~~~~~l 800 (1103)
+..++.. .+++|+.|++++|.+.+..|..++.+++|++|+|++|..... .|..+ ..+++|++|+|++|.+...
T Consensus 111 l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~~~~~~~~l~~L~~L~L~~N~l~~~- 184 (317)
T 3o53_A 111 ISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV---NFAELAASSDTLEHLNLQYNFIYDV- 184 (317)
T ss_dssp CSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE---EGGGGGGGTTTCCEEECTTSCCCEE-
T ss_pred cCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc---cHHHHhhccCcCCEEECCCCcCccc-
Confidence 9988754 478999999999999888888899999999999999864432 34444 4789999999999986543
Q ss_pred CCCcccCCCCCCCEEeCCCCCccccCccccCCCCCCEEeccCCcCCcccCccccccccceeccccccccc
Q 044579 801 PHSIDFCCLSSLQWLDLSGNNFESLPSSIKQLSQLRKLDLSNCNMLLSLPELPLFLEDLEARNCKRLQFL 870 (1103)
Q Consensus 801 p~~~~~~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~~~~c~~l~~~ 870 (1103)
+. ...+++|++|+|++|.++.+|..+..+++|+.|+|++|++. .+|..+..++.|...++.+|.+.
T Consensus 185 ~~---~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 185 KG---QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp EC---CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred cc---ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence 21 23489999999999999999989999999999999999866 67877778888888888888766
No 80
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=8e-19 Score=208.54 Aligned_cols=217 Identities=18% Similarity=0.131 Sum_probs=173.2
Q ss_pred cCCcceEecCCCCCCCccCC-CCCCCCCccEEEecCCCCCCcccccccCCCcccEEEccCCCCCcccCCCCCCCCCcEEE
Q 044579 617 EASKLKSIDLCHSQHLIRMP-DLSEIPNLERTNFFNCTNLVLVPSSIQNFNNLSMLCFRGCESLRSFPRDIHFVSPVTID 695 (1103)
Q Consensus 617 ~l~~L~~L~L~~~~~~~~~p-~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~ 695 (1103)
.+++|+.|+|++|.+....| .|..+++|++|+|++|......| ++.+++|++|+|++|. +..+|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~-l~~l~------------ 96 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY-VQELL------------ 96 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSE-EEEEE------------
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCc-CCCCC------------
Confidence 44588899998888666554 47888888888888876544443 7788888888888753 32222
Q ss_pred ccCCcCCCcCCCcCCCccEEecCCccceecCccccCCCCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCcccc
Q 044579 696 FSFCVNLTEFPKISGKITELNLCDTAIEEVPSSVECLTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITE 775 (1103)
Q Consensus 696 l~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~ 775 (1103)
. ..+|+.|++++|.+..+|.. .+++|+.|+|++|.+.+..|..++.+++|+.|+|++|.....
T Consensus 97 -----------~-~~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--- 159 (487)
T 3oja_A 97 -----------V-GPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV--- 159 (487)
T ss_dssp -----------E-CTTCCEEECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEE---
T ss_pred -----------C-CCCcCEEECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCc---
Confidence 1 15899999999999988764 578999999999999998899999999999999999865443
Q ss_pred CCcccc-CCCCCCeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCccccCccccCCCCCCEEeccCCcCCcccCcccc
Q 044579 776 LPSSFA-NLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESLPSSIKQLSQLRKLDLSNCNMLLSLPELPL 854 (1103)
Q Consensus 776 lp~~~~-~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~l~~lp~~~~ 854 (1103)
.|..+. .+++|+.|+|++|.+.+. | + ...+++|+.|+|++|.++.+|..+..+++|+.|+|++|.+. .+|..+.
T Consensus 160 ~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~--~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~ 234 (487)
T 3oja_A 160 NFAELAASSDTLEHLNLQYNFIYDV-K-G--QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALR 234 (487)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEE-E-C--CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCC
T ss_pred ChHHHhhhCCcccEEecCCCccccc-c-c--cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCc-ccchhhc
Confidence 566665 799999999999996644 2 1 23589999999999999999999999999999999999976 4787777
Q ss_pred ccccceeccccccccc
Q 044579 855 FLEDLEARNCKRLQFL 870 (1103)
Q Consensus 855 ~L~~L~~~~c~~l~~~ 870 (1103)
.+..|..+++.+|.+.
T Consensus 235 ~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 235 FSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CCTTCCEEECTTCCBC
T ss_pred cCCCCCEEEcCCCCCc
Confidence 7777877777777765
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.76 E-value=3e-18 Score=187.63 Aligned_cols=231 Identities=20% Similarity=0.182 Sum_probs=129.0
Q ss_pred cccccccccccccccccccccccCCcceEecCCCCCCCccCCCCCCCCCccEEEecCCCCCCcccccccCCCcccEEEcc
Q 044579 595 LENLIELRLPYSKVEQIWEGKKEASKLKSIDLCHSQHLIRMPDLSEIPNLERTNFFNCTNLVLVPSSIQNFNNLSMLCFR 674 (1103)
Q Consensus 595 l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~ 674 (1103)
+.++..+++..+.+..+ .....+++|+.|++++|. ...++.+..+++|++|++++|.. ..+ +.+..+++|++|+++
T Consensus 18 ~~~l~~l~l~~~~~~~~-~~~~~l~~L~~L~l~~~~-i~~~~~l~~l~~L~~L~l~~n~l-~~~-~~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 18 FAETIKANLKKKSVTDA-VTQNELNSIDQIIANNSD-IKSVQGIQYLPNVRYLALGGNKL-HDI-SALKELTNLTYLILT 93 (272)
T ss_dssp HHHHHHHHHTCSCTTSE-ECHHHHTTCCEEECTTSC-CCCCTTGGGCTTCCEEECTTSCC-CCC-GGGTTCTTCCEEECT
T ss_pred HHHHHHHHhcCcccccc-cccccccceeeeeeCCCC-cccccccccCCCCcEEECCCCCC-CCc-hhhcCCCCCCEEECC
Confidence 34455555555555443 224456666666666665 33455566666677777766543 223 256666666666666
Q ss_pred CCCCCcccCCCCCCCCCcEEEccCCcCCCcCCCcCCCccEEecCCccceecCcc-ccCCCCCCEEecCCCcccccccccc
Q 044579 675 GCESLRSFPRDIHFVSPVTIDFSFCVNLTEFPKISGKITELNLCDTAIEEVPSS-VECLTNLKELYLSRCSTLNRLSTSI 753 (1103)
Q Consensus 675 ~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~L~~~~~~~~lp~~l 753 (1103)
+|. +..+|... ...+.+|++|++++|.+..+|.. +..+++|+.|+|++|.+.+..+..+
T Consensus 94 ~n~-l~~~~~~~-------------------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 153 (272)
T 3rfs_A 94 GNQ-LQSLPNGV-------------------FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVF 153 (272)
T ss_dssp TSC-CCCCCTTT-------------------TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCc-cCccChhH-------------------hcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHh
Confidence 653 22222211 00112333444444444444432 5666677777777776655555556
Q ss_pred cCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCccccCccccCCC
Q 044579 754 CKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESLPSSIKQLS 833 (1103)
Q Consensus 754 ~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~lp~~i~~l~ 833 (1103)
+.+++|++|++++|..... .+..++.+++|+.|+|++|.+.+.. +..+..+++|+.|+|++|.+. ..++
T Consensus 154 ~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~l~~N~~~------~~~~ 222 (272)
T 3rfs_A 154 DKLTNLTELDLSYNQLQSL---PEGVFDKLTQLKDLRLYQNQLKSVP--DGVFDRLTSLQYIWLHDNPWD------CTCP 222 (272)
T ss_dssp TTCTTCCEEECCSSCCCCC---CTTTTTTCTTCCEEECCSSCCSCCC--TTTTTTCTTCCEEECCSSCBC------CCTT
T ss_pred ccCccCCEEECCCCCcCcc---CHHHhcCCccCCEEECCCCcCCccC--HHHHhCCcCCCEEEccCCCcc------ccCc
Confidence 6677777777776642211 2333566677777777776654433 233556677777777777554 2345
Q ss_pred CCCEEeccCCcCCcccCccccccccce
Q 044579 834 QLRKLDLSNCNMLLSLPELPLFLEDLE 860 (1103)
Q Consensus 834 ~L~~L~L~~n~~l~~lp~~~~~L~~L~ 860 (1103)
+|+.|+++.|.+.+.+|..++.+....
T Consensus 223 ~l~~l~~~~n~~~g~ip~~~~~~~~~~ 249 (272)
T 3rfs_A 223 GIRYLSEWINKHSGVVRNSAGSVAPDS 249 (272)
T ss_dssp TTHHHHHHHHHTGGGBBCTTSCBCGGG
T ss_pred HHHHHHHHHHhCCCcccCcccccCCCC
Confidence 677777777777777777666555433
No 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.75 E-value=2.8e-17 Score=181.32 Aligned_cols=201 Identities=19% Similarity=0.157 Sum_probs=142.9
Q ss_pred ccCCcceEecCCCCCCCccCCCCCCCCCccEEEecCCCCCCcccccccCCCcccEEEccCCCCCcccCCCCCCCCCcEEE
Q 044579 616 KEASKLKSIDLCHSQHLIRMPDLSEIPNLERTNFFNCTNLVLVPSSIQNFNNLSMLCFRGCESLRSFPRDIHFVSPVTID 695 (1103)
Q Consensus 616 ~~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~ 695 (1103)
.++++|+.++++++.+....+.+. ++|+.|++++|......+..+..+++|+.|+|++|. +..++..
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~---------- 73 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD---------- 73 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC----------
T ss_pred cccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC----------
Confidence 444555555555554332222222 456666666655444445567777777777777743 3333321
Q ss_pred ccCCcCCCcCCCcCCCccEEecCCccceecCccccCCCCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCcccc
Q 044579 696 FSFCVNLTEFPKISGKITELNLCDTAIEEVPSSVECLTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITE 775 (1103)
Q Consensus 696 l~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~ 775 (1103)
..+.+|+.|++++|.+..+|..+..+++|+.|+|++|.+.+..|..|.++++|++|+|++|... .
T Consensus 74 -----------~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~----~ 138 (290)
T 1p9a_G 74 -----------GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK----T 138 (290)
T ss_dssp -----------SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC----C
T ss_pred -----------CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC----c
Confidence 1234566777777777788888888999999999999887777778899999999999997543 2
Q ss_pred CC-ccccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCccccCccccCCCCCCEEeccCCcCC
Q 044579 776 LP-SSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESLPSSIKQLSQLRKLDLSNCNML 846 (1103)
Q Consensus 776 lp-~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~l 846 (1103)
+| ..+..+++|+.|+|++|.+. .+| ...+..+++|+.|+|++|.++.+|..+..+++|+.|+|++|++.
T Consensus 139 ~~~~~~~~l~~L~~L~L~~N~l~-~l~-~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 139 LPPGLLTPTPKLEKLSLANNNLT-ELP-AGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCS-CCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred cChhhcccccCCCEEECCCCcCC-ccC-HHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 44 44678899999999998865 554 34467789999999999999999999999999999999999853
No 83
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.75 E-value=1.2e-17 Score=189.98 Aligned_cols=189 Identities=24% Similarity=0.298 Sum_probs=134.0
Q ss_pred EEEEEcCCCCCCCCCcccccccccccccccccccccc-ccccCCcceEecCCCCCCCccCCC--CCCCCCccEEEecCCC
Q 044579 577 RYLHWHGYPLKTLPFDFELENLIELRLPYSKVEQIWE-GKKEASKLKSIDLCHSQHLIRMPD--LSEIPNLERTNFFNCT 653 (1103)
Q Consensus 577 r~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~-~~~~l~~L~~L~L~~~~~~~~~p~--l~~l~~L~~L~L~~~~ 653 (1103)
+.++.+++.++++|..+ +++|++|+|++|+|+.+|. .+.++++|++|+|++|++...+|. |.++++|+++.+.+++
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 45677888899999876 5789999999999999986 489999999999999998777764 7899998876666656
Q ss_pred CCCcc-cccccCCCcccEEEccCCCCCcccCCCC--CCCCCcEEEccCCcCCCcCCCc-----CCCccEEecCCccceec
Q 044579 654 NLVLV-PSSIQNFNNLSMLCFRGCESLRSFPRDI--HFVSPVTIDFSFCVNLTEFPKI-----SGKITELNLCDTAIEEV 725 (1103)
Q Consensus 654 ~l~~~-~~~i~~l~~L~~L~L~~~~~l~~lp~~~--~l~~L~~L~l~~c~~l~~~~~~-----~~~L~~L~L~~~~i~~l 725 (1103)
.+..+ |..+..+++|++|++++|. +..+|... ...++..|++.++..+..++.. ...++.|+|++|.|+.+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred cccccCchhhhhccccccccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence 66666 5678999999999999964 55555433 5566777777777666655532 23455666666666666
Q ss_pred CccccCCCCCCEEecCCCcccccccc-cccCCCCCcEEeecCC
Q 044579 726 PSSVECLTNLKELYLSRCSTLNRLST-SICKLKSLHELILSDC 767 (1103)
Q Consensus 726 p~~~~~l~~L~~L~L~~~~~~~~lp~-~l~~l~~L~~L~L~~~ 767 (1103)
|......++|+.|++.+|+..+.+|. .|.++++|++|+|++|
T Consensus 170 ~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N 212 (350)
T 4ay9_X 170 HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT 212 (350)
T ss_dssp CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS
T ss_pred ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC
Confidence 66555555666666665544444443 3455555555555553
No 84
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.74 E-value=2.9e-17 Score=180.32 Aligned_cols=221 Identities=17% Similarity=0.136 Sum_probs=126.2
Q ss_pred EEcCCCCCCCCCcccccccccccccccccccccc-ccccCCcceEecCCCCCCCccCC-CCCCCCCccEEEecCCCCCCc
Q 044579 580 HWHGYPLKTLPFDFELENLIELRLPYSKVEQIWE-GKKEASKLKSIDLCHSQHLIRMP-DLSEIPNLERTNFFNCTNLVL 657 (1103)
Q Consensus 580 ~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~-~~~~l~~L~~L~L~~~~~~~~~p-~l~~l~~L~~L~L~~~~~l~~ 657 (1103)
+..+..+..+|..+ .++|++|+|++|+++.++. .+..+++|++|+|++|.+....+ .+..+++|++|++++|.....
T Consensus 13 ~c~~~~l~~ip~~l-~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 91 (276)
T 2z62_A 13 QCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91 (276)
T ss_dssp ECTTSCCSSCCSSS-CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred EecCCCccccCCCC-CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc
Confidence 33444555666544 2466777777777776654 56667777777777776544433 266667777777776654444
Q ss_pred ccccccCCCcccEEEccCCCCCcccCCCCCCCCCcEEEccCCcCCCcCCCcCCCccEEecCCccceecCccccCCCCCCE
Q 044579 658 VPSSIQNFNNLSMLCFRGCESLRSFPRDIHFVSPVTIDFSFCVNLTEFPKISGKITELNLCDTAIEEVPSSVECLTNLKE 737 (1103)
Q Consensus 658 ~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~ 737 (1103)
.+..+.++++|++|++++|.. ..++. ..+..+++|++
T Consensus 92 ~~~~~~~l~~L~~L~l~~n~l-~~~~~------------------------------------------~~~~~l~~L~~ 128 (276)
T 2z62_A 92 ALGAFSGLSSLQKLVAVETNL-ASLEN------------------------------------------FPIGHLKTLKE 128 (276)
T ss_dssp CTTTTTTCTTCCEEECTTSCC-CCSTT------------------------------------------CCCTTCTTCCE
T ss_pred ChhhhcCCccccEEECCCCCc-cccCc------------------------------------------hhcccCCCCCE
Confidence 445566666666666666422 11111 12344445555
Q ss_pred EecCCCcccc-cccccccCCCCCcEEeecCCCCCCccccCCccccCCCCCC----eeeccCCCCCCCCCCCcccCCCCCC
Q 044579 738 LYLSRCSTLN-RLSTSICKLKSLHELILSDCLSLETITELPSSFANLEGLE----KLVLVGCSKLNKLPHSIDFCCLSSL 812 (1103)
Q Consensus 738 L~L~~~~~~~-~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~----~L~L~~~~~~~~lp~~~~~~~l~~L 812 (1103)
|++++|.+.+ .+|..+..+++|++|+|++|..... .+..+..+++|+ .|++++|.+....+ . .....+|
T Consensus 129 L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~---~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~--~-~~~~~~L 202 (276)
T 2z62_A 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI---YCTDLRVLHQMPLLNLSLDLSLNPMNFIQP--G-AFKEIRL 202 (276)
T ss_dssp EECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE---CGGGGHHHHTCTTCCEEEECCSSCCCEECT--T-SSCSCCE
T ss_pred EECcCCccceecCchhhccCCCCCEEECCCCCCCcC---CHHHhhhhhhccccceeeecCCCcccccCc--c-ccCCCcc
Confidence 5555554433 2344555555555555555432211 122333344444 66666666443221 1 1223478
Q ss_pred CEEeCCCCCccccCcc-ccCCCCCCEEeccCCcCCcccC
Q 044579 813 QWLDLSGNNFESLPSS-IKQLSQLRKLDLSNCNMLLSLP 850 (1103)
Q Consensus 813 ~~L~Ls~n~l~~lp~~-i~~l~~L~~L~L~~n~~l~~lp 850 (1103)
+.|+|++|.++.+|.. +..+++|+.|+|++|++....|
T Consensus 203 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 203 KELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp EEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred cEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 8888988888888765 4788999999999998765443
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.74 E-value=1.5e-17 Score=178.26 Aligned_cols=205 Identities=17% Similarity=0.154 Sum_probs=103.6
Q ss_pred CCCCCCcccccccccccccccccccccc-ccccCCcceEecCCCCCCCccCC--CCCCCCCccEEEecCCCCCCccc-cc
Q 044579 586 LKTLPFDFELENLIELRLPYSKVEQIWE-GKKEASKLKSIDLCHSQHLIRMP--DLSEIPNLERTNFFNCTNLVLVP-SS 661 (1103)
Q Consensus 586 l~~lp~~~~l~~L~~L~L~~n~i~~l~~-~~~~l~~L~~L~L~~~~~~~~~p--~l~~l~~L~~L~L~~~~~l~~~~-~~ 661 (1103)
++.+|. -..+|++|+|++|+++.++. .+..+++|++|+|++|..+..++ .|.++++|++|++++|+.+..++ ..
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 555555 23356666666666655554 34555555555555554222222 24444555555554433333332 23
Q ss_pred ccCCCcccEEEccCCCCCcccCCCCCCCCCcEEEccCCcCCCcCCCcCCCccEEecCCccceecCccccCCCCCC---EE
Q 044579 662 IQNFNNLSMLCFRGCESLRSFPRDIHFVSPVTIDFSFCVNLTEFPKISGKITELNLCDTAIEEVPSSVECLTNLK---EL 738 (1103)
Q Consensus 662 i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~---~L 738 (1103)
+..+++|+.|++++ |.++.+|. +..+++|+ .|
T Consensus 101 f~~l~~L~~L~l~~--------------------------------------------n~l~~lp~-~~~l~~L~~L~~L 135 (239)
T 2xwt_C 101 LKELPLLKFLGIFN--------------------------------------------TGLKMFPD-LTKVYSTDIFFIL 135 (239)
T ss_dssp EECCTTCCEEEEEE--------------------------------------------ECCCSCCC-CTTCCBCCSEEEE
T ss_pred hCCCCCCCEEeCCC--------------------------------------------CCCccccc-cccccccccccEE
Confidence 44444444444444 33333333 34444444 55
Q ss_pred ecCCC-cccccccccccCCCCCc-EEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcccCCC-CCCCEE
Q 044579 739 YLSRC-STLNRLSTSICKLKSLH-ELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCL-SSLQWL 815 (1103)
Q Consensus 739 ~L~~~-~~~~~lp~~l~~l~~L~-~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l-~~L~~L 815 (1103)
++++| .+.+..+..+.++++|+ +|++++|.. ..+|......++|+.|+|++|..+..+| +..+..+ ++|+.|
T Consensus 136 ~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l----~~i~~~~~~~~~L~~L~L~~n~~l~~i~-~~~~~~l~~~L~~L 210 (239)
T 2xwt_C 136 EITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF----TSVQGYAFNGTKLDAVYLNKNKYLTVID-KDAFGGVYSGPSLL 210 (239)
T ss_dssp EEESCTTCCEECTTTTTTTBSSEEEEECCSCCC----CEECTTTTTTCEEEEEECTTCTTCCEEC-TTTTTTCSBCCSEE
T ss_pred ECCCCcchhhcCcccccchhcceeEEEcCCCCC----cccCHhhcCCCCCCEEEcCCCCCcccCC-HHHhhccccCCcEE
Confidence 55555 43333333455566666 666655432 2244433333566666666664233333 2335556 777777
Q ss_pred eCCCCCccccCccccCCCCCCEEeccCCc
Q 044579 816 DLSGNNFESLPSSIKQLSQLRKLDLSNCN 844 (1103)
Q Consensus 816 ~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~ 844 (1103)
+|++|+++.+|.. .+++|+.|++++|.
T Consensus 211 ~l~~N~l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 211 DVSQTSVTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp ECTTCCCCCCCCT--TCTTCSEEECTTC-
T ss_pred ECCCCccccCChh--HhccCceeeccCcc
Confidence 7777777777654 56777777777664
No 86
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.73 E-value=3.6e-17 Score=179.55 Aligned_cols=223 Identities=19% Similarity=0.176 Sum_probs=155.0
Q ss_pred cccccccccccccccccCCcceEecCCCCCCCccCC-CCCCCCCccEEEecCCCCCCcccccccCCCcccEEEccCCCCC
Q 044579 601 LRLPYSKVEQIWEGKKEASKLKSIDLCHSQHLIRMP-DLSEIPNLERTNFFNCTNLVLVPSSIQNFNNLSMLCFRGCESL 679 (1103)
Q Consensus 601 L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~p-~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~~~~l 679 (1103)
.+..+..+..+|..+. ++|++|+|++|.+....+ .+.++++|++|++++|......+..+.++++|++|+++
T Consensus 12 ~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~----- 84 (276)
T 2z62_A 12 YQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT----- 84 (276)
T ss_dssp EECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECT-----
T ss_pred EEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECC-----
Confidence 3444455556665443 456666666666444333 35555556666555553322222344444444444444
Q ss_pred cccCCCCCCCCCcEEEccCCcCCCcCCCcCCCccEEecCCccceecC-ccccCCCCCCEEecCCCcccccccccccCCCC
Q 044579 680 RSFPRDIHFVSPVTIDFSFCVNLTEFPKISGKITELNLCDTAIEEVP-SSVECLTNLKELYLSRCSTLNRLSTSICKLKS 758 (1103)
Q Consensus 680 ~~lp~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~ 758 (1103)
+|.+..++ ..+..+++|+.|++++|.+.+..+..++.+++
T Consensus 85 ---------------------------------------~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 125 (276)
T 2z62_A 85 ---------------------------------------GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125 (276)
T ss_dssp ---------------------------------------TCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTT
T ss_pred ---------------------------------------CCccCccChhhhcCCccccEEECCCCCccccCchhcccCCC
Confidence 44444444 46788999999999999888777777999999
Q ss_pred CcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCC----EEeCCCCCccccCccccCCCC
Q 044579 759 LHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQ----WLDLSGNNFESLPSSIKQLSQ 834 (1103)
Q Consensus 759 L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~----~L~Ls~n~l~~lp~~i~~l~~ 834 (1103)
|++|++++|..... .+|..+.++++|++|+|++|.+.... +..+..+++|+ .|++++|.++.+|.......+
T Consensus 126 L~~L~l~~n~l~~~--~l~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~ 201 (276)
T 2z62_A 126 LKELNVAHNLIQSF--KLPEYFSNLTNLEHLDLSSNKIQSIY--CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 201 (276)
T ss_dssp CCEEECCSSCCCCC--CCCGGGGGCTTCCEEECCSSCCCEEC--GGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCC
T ss_pred CCEEECcCCcccee--cCchhhccCCCCCEEECCCCCCCcCC--HHHhhhhhhccccceeeecCCCcccccCccccCCCc
Confidence 99999999754321 26889999999999999999866543 33455566666 899999999999888777789
Q ss_pred CCEEeccCCcCCcccCccccccccceecccccccccCCC
Q 044579 835 LRKLDLSNCNMLLSLPELPLFLEDLEARNCKRLQFLPEI 873 (1103)
Q Consensus 835 L~~L~L~~n~~l~~lp~~~~~L~~L~~~~c~~l~~~~~~ 873 (1103)
|+.|+|++|.+.+..+..+..+..|...++.+|.+.+..
T Consensus 202 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 202 LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp EEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred ccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 999999999977665566677888888888887766543
No 87
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.73 E-value=2.3e-17 Score=180.55 Aligned_cols=227 Identities=21% Similarity=0.191 Sum_probs=171.5
Q ss_pred cCCcceEecCCCCCCCccCCCCCCCCCccEEEecCCCCCCcccccccCCCcccEEEccCCCCCcccCCCCCCCCCcEEEc
Q 044579 617 EASKLKSIDLCHSQHLIRMPDLSEIPNLERTNFFNCTNLVLVPSSIQNFNNLSMLCFRGCESLRSFPRDIHFVSPVTIDF 696 (1103)
Q Consensus 617 ~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l 696 (1103)
.+.++..+++..+.. .....+..+++|+.|++.+|. +..++ .+..+++|++|++++|. +..++....
T Consensus 17 ~~~~l~~l~l~~~~~-~~~~~~~~l~~L~~L~l~~~~-i~~~~-~l~~l~~L~~L~l~~n~-l~~~~~l~~--------- 83 (272)
T 3rfs_A 17 AFAETIKANLKKKSV-TDAVTQNELNSIDQIIANNSD-IKSVQ-GIQYLPNVRYLALGGNK-LHDISALKE--------- 83 (272)
T ss_dssp HHHHHHHHHHTCSCT-TSEECHHHHTTCCEEECTTSC-CCCCT-TGGGCTTCCEEECTTSC-CCCCGGGTT---------
T ss_pred hHHHHHHHHhcCccc-ccccccccccceeeeeeCCCC-ccccc-ccccCCCCcEEECCCCC-CCCchhhcC---------
Confidence 345666777777653 334457788999999999975 44444 58899999999999975 333321112
Q ss_pred cCCcCCCcCCCcCCCccEEecCCccceecCcc-ccCCCCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCcccc
Q 044579 697 SFCVNLTEFPKISGKITELNLCDTAIEEVPSS-VECLTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITE 775 (1103)
Q Consensus 697 ~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~ 775 (1103)
+.+|++|++++|.++.+|.. +..+++|++|+|++|.+.+..+..++.+++|++|++++|... .
T Consensus 84 ------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~----~ 147 (272)
T 3rfs_A 84 ------------LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ----S 147 (272)
T ss_dssp ------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC----C
T ss_pred ------------CCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccC----c
Confidence 23567777777777777654 689999999999999988777777899999999999998533 3
Q ss_pred CC-ccccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCccccCcc-ccCCCCCCEEeccCCcCCcccCccc
Q 044579 776 LP-SSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESLPSS-IKQLSQLRKLDLSNCNMLLSLPELP 853 (1103)
Q Consensus 776 lp-~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~lp~~-i~~l~~L~~L~L~~n~~l~~lp~~~ 853 (1103)
+| ..+..+++|+.|++++|.+.. ++ +..+..+++|+.|+|++|.++.+|.. +..+++|+.|+|++|++.+..|
T Consensus 148 ~~~~~~~~l~~L~~L~l~~n~l~~-~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~--- 222 (272)
T 3rfs_A 148 LPKGVFDKLTNLTELDLSYNQLQS-LP-EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP--- 222 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCC-CC-TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT---
T ss_pred cCHHHhccCccCCEEECCCCCcCc-cC-HHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc---
Confidence 44 456899999999999998664 43 34467899999999999999988754 6899999999999999876655
Q ss_pred cccccceecccccccccCCCCchhhhhh
Q 044579 854 LFLEDLEARNCKRLQFLPEIPSCLEELD 881 (1103)
Q Consensus 854 ~~L~~L~~~~c~~l~~~~~~p~~l~~L~ 881 (1103)
. |...+...+.+.|.+|.++..+.
T Consensus 223 -~---l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 223 -G---IRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp -T---THHHHHHHHHTGGGBBCTTSCBC
T ss_pred -H---HHHHHHHHHhCCCcccCcccccC
Confidence 2 33344455677888887766553
No 88
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.73 E-value=1.1e-16 Score=174.97 Aligned_cols=114 Identities=26% Similarity=0.299 Sum_probs=73.7
Q ss_pred ccCCCCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccccCCc-cccCCCCCCeeeccCCCCCCCCCCCcccC
Q 044579 729 VECLTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELPS-SFANLEGLEKLVLVGCSKLNKLPHSIDFC 807 (1103)
Q Consensus 729 ~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~~~~~~ 807 (1103)
+..+++|+.|+|++|.+.+..+..+..+++|++|+|++|.. ..+|. .+..+++|+.|+|++|.+.. ++ +..+.
T Consensus 105 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l----~~~~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~~ 178 (270)
T 2o6q_A 105 FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL----QSLPKGVFDKLTSLKELRLYNNQLKR-VP-EGAFD 178 (270)
T ss_dssp TTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC----CCCCTTTTTTCTTCCEEECCSSCCSC-CC-TTTTT
T ss_pred cccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcC----CccCHhHccCCcccceeEecCCcCcE-eC-hhHhc
Confidence 34555666666666655555555566666666666666532 22333 35667777777777776443 32 33456
Q ss_pred CCCCCCEEeCCCCCccccCcc-ccCCCCCCEEeccCCcCCcc
Q 044579 808 CLSSLQWLDLSGNNFESLPSS-IKQLSQLRKLDLSNCNMLLS 848 (1103)
Q Consensus 808 ~l~~L~~L~Ls~n~l~~lp~~-i~~l~~L~~L~L~~n~~l~~ 848 (1103)
.+++|+.|+|++|.++.+|.. +..+++|+.|+|++|++...
T Consensus 179 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 179 KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred cCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 678888888888888877754 67788888888888875443
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.73 E-value=2.3e-17 Score=183.87 Aligned_cols=212 Identities=19% Similarity=0.255 Sum_probs=130.7
Q ss_pred cccccccccccccccccccccCCcceEecCCCCCCCccCCCCCCCCCccEEEecCCCCCCcccccccCCCcccEEEccCC
Q 044579 597 NLIELRLPYSKVEQIWEGKKEASKLKSIDLCHSQHLIRMPDLSEIPNLERTNFFNCTNLVLVPSSIQNFNNLSMLCFRGC 676 (1103)
Q Consensus 597 ~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~~ 676 (1103)
++..+.+..+.+..+. ....+++|+.|++++|.+ ..+|.+..+++|++|++++|. +..++. +..+++|++|++++|
T Consensus 20 ~~~~~~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i-~~l~~~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n 95 (308)
T 1h6u_A 20 NAIKIAAGKSNVTDTV-TQADLDGITTLSAFGTGV-TTIEGVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGN 95 (308)
T ss_dssp HHHHHHTTCSSTTSEE-CHHHHHTCCEEECTTSCC-CCCTTGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSC
T ss_pred HHHHHHhCCCCcCcee-cHHHcCCcCEEEeeCCCc-cCchhhhccCCCCEEEccCCc-CCCChh-HccCCCCCEEEccCC
Confidence 3334444444443321 123455555555555542 234455555666666665543 333333 566666666666664
Q ss_pred CCCcccCCCCCCCCCcEEEccCCcCCCcCCCcCCCccEEecCCccceecCccccCCCCCCEEecCCCcccccccccccCC
Q 044579 677 ESLRSFPRDIHFVSPVTIDFSFCVNLTEFPKISGKITELNLCDTAIEEVPSSVECLTNLKELYLSRCSTLNRLSTSICKL 756 (1103)
Q Consensus 677 ~~l~~lp~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l 756 (1103)
. +..++....+ .+|+.|++++|.+..+|. +..+++|+.|++++|.+.+..+ +..+
T Consensus 96 ~-l~~~~~~~~l---------------------~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l 150 (308)
T 1h6u_A 96 P-LKNVSAIAGL---------------------QSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP--LAGL 150 (308)
T ss_dssp C-CSCCGGGTTC---------------------TTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGC
T ss_pred c-CCCchhhcCC---------------------CCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc--ccCC
Confidence 3 2222211112 234445555555555554 6777888888888877655433 7788
Q ss_pred CCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCccccCccccCCCCCC
Q 044579 757 KSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESLPSSIKQLSQLR 836 (1103)
Q Consensus 757 ~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~ 836 (1103)
++|+.|++++|.. ..++. +..+++|+.|++++|.+.. ++ .+..+++|+.|+|++|.++.++ .+..+++|+
T Consensus 151 ~~L~~L~l~~n~l----~~~~~-l~~l~~L~~L~l~~n~l~~-~~---~l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~ 220 (308)
T 1h6u_A 151 TNLQYLSIGNAQV----SDLTP-LANLSKLTTLKADDNKISD-IS---PLASLPNLIEVHLKNNQISDVS-PLANTSNLF 220 (308)
T ss_dssp TTCCEEECCSSCC----CCCGG-GTTCTTCCEEECCSSCCCC-CG---GGGGCTTCCEEECTTSCCCBCG-GGTTCTTCC
T ss_pred CCccEEEccCCcC----CCChh-hcCCCCCCEEECCCCccCc-Ch---hhcCCCCCCEEEccCCccCccc-cccCCCCCC
Confidence 8888888888643 22444 7788888888888887543 32 1567899999999999999888 488899999
Q ss_pred EEeccCCcCCc
Q 044579 837 KLDLSNCNMLL 847 (1103)
Q Consensus 837 ~L~L~~n~~l~ 847 (1103)
.|+|++|++.+
T Consensus 221 ~L~l~~N~i~~ 231 (308)
T 1h6u_A 221 IVTLTNQTITN 231 (308)
T ss_dssp EEEEEEEEEEC
T ss_pred EEEccCCeeec
Confidence 99999998643
No 90
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.72 E-value=2.3e-19 Score=220.22 Aligned_cols=321 Identities=12% Similarity=0.028 Sum_probs=222.5
Q ss_pred hhcCcccceEEEecCCCCCccccCcceecCCCcccCCCceEEEEEcCCCCCCCCC-----cc-ccccccccccccccccc
Q 044579 537 FANMSNLRLLKFYMPERGGVPIMSSKVHLDQGLEDLPEKLRYLHWHGYPLKTLPF-----DF-ELENLIELRLPYSKVEQ 610 (1103)
Q Consensus 537 f~~l~~Lr~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~-----~~-~l~~L~~L~L~~n~i~~ 610 (1103)
..++++|+.|++++|.+.+.. ...++..+..++ +|++|++++|.+..+.. .+ .+++|++|+|++|.+..
T Consensus 160 ~~~~~~L~~L~L~~~~~~~~~----~~~l~~~~~~~~-~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~ 234 (592)
T 3ogk_B 160 VTHCRKIKTLLMEESSFSEKD----GKWLHELAQHNT-SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE 234 (592)
T ss_dssp HHHCTTCSEEECTTCEEECCC----SHHHHHHHHHCC-CCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG
T ss_pred HhhCCCCCEEECccccccCcc----hhHHHHHHhcCC-CccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH
Confidence 347899999999887542110 000111222334 89999999998874432 22 67899999999999999
Q ss_pred cccccccCCcceEecCCCCCCCcc----CCCCCCCCCccEEEecCCCCCCcccccccCCCcccEEEccCCCCCcc-cC-C
Q 044579 611 IWEGKKEASKLKSIDLCHSQHLIR----MPDLSEIPNLERTNFFNCTNLVLVPSSIQNFNNLSMLCFRGCESLRS-FP-R 684 (1103)
Q Consensus 611 l~~~~~~l~~L~~L~L~~~~~~~~----~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~~~~l~~-lp-~ 684 (1103)
++..+..+++|+.|+++++..... ...+..+++|+.|++.++ ....+|..+..+++|++|++++|. +.. .. .
T Consensus 235 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~ 312 (592)
T 3ogk_B 235 LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYAL-LETEDHCT 312 (592)
T ss_dssp GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHH
T ss_pred HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCc-CCHHHHHH
Confidence 998899999999999986433211 224778899999999884 456678888899999999999987 332 11 1
Q ss_pred C-CCCCCCcEEEccCCcCCCcCC---CcCCCccEEecC-----------Cccce--ecCccccCCCCCCEEecCCCcccc
Q 044579 685 D-IHFVSPVTIDFSFCVNLTEFP---KISGKITELNLC-----------DTAIE--EVPSSVECLTNLKELYLSRCSTLN 747 (1103)
Q Consensus 685 ~-~~l~~L~~L~l~~c~~l~~~~---~~~~~L~~L~L~-----------~~~i~--~lp~~~~~l~~L~~L~L~~~~~~~ 747 (1103)
. ..+++|+.|+++++..-..++ ....+|++|+++ .+.++ .++.....+++|++|+++.+.+.+
T Consensus 313 ~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~ 392 (592)
T 3ogk_B 313 LIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITN 392 (592)
T ss_dssp HHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCH
T ss_pred HHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccH
Confidence 1 278899999998542222222 345689999999 35555 244445678999999998877777
Q ss_pred cccccccC-CCCCcEEeecCCCCCCccccC------CccccCCCCCCeeeccCCCC--CCCCCCCcccCCCCCCCEEeCC
Q 044579 748 RLSTSICK-LKSLHELILSDCLSLETITEL------PSSFANLEGLEKLVLVGCSK--LNKLPHSIDFCCLSSLQWLDLS 818 (1103)
Q Consensus 748 ~lp~~l~~-l~~L~~L~L~~~~~l~~i~~l------p~~~~~l~~L~~L~L~~~~~--~~~lp~~~~~~~l~~L~~L~Ls 818 (1103)
..+..++. +++|+.|++++|..-+.++.. +..+.++++|+.|+|+.|.. ....+ ......+++|+.|+|+
T Consensus 393 ~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~-~~~~~~~~~L~~L~L~ 471 (592)
T 3ogk_B 393 ESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL-SYIGQYSPNVRWMLLG 471 (592)
T ss_dssp HHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH-HHHHHSCTTCCEEEEC
T ss_pred HHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH-HHHHHhCccceEeecc
Confidence 76666665 999999999854322333333 33367799999999987652 22111 1112347899999999
Q ss_pred CCCcc--ccCccccCCCCCCEEeccCCcCCcc-cCcc---ccccccceecccc
Q 044579 819 GNNFE--SLPSSIKQLSQLRKLDLSNCNMLLS-LPEL---PLFLEDLEARNCK 865 (1103)
Q Consensus 819 ~n~l~--~lp~~i~~l~~L~~L~L~~n~~l~~-lp~~---~~~L~~L~~~~c~ 865 (1103)
+|.++ .++..+..+++|++|+|++|++... ++.. +++|+.|.+.+|.
T Consensus 472 ~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 472 YVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp SCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred CCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 99987 4677778899999999999996543 3333 3455555555554
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.72 E-value=1.9e-18 Score=195.84 Aligned_cols=220 Identities=22% Similarity=0.278 Sum_probs=110.6
Q ss_pred ceEEEEEcCCCCCCCCCcc-cc--ccccccccccccccccccccccCCcceEecCCCCCCCcc-CCC-CCCCCCccEEEe
Q 044579 575 KLRYLHWHGYPLKTLPFDF-EL--ENLIELRLPYSKVEQIWEGKKEASKLKSIDLCHSQHLIR-MPD-LSEIPNLERTNF 649 (1103)
Q Consensus 575 ~Lr~L~l~~~~l~~lp~~~-~l--~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~-~p~-l~~l~~L~~L~L 649 (1103)
.++.|+++++.+. |..+ .+ ++++.|++++|.+...+..+..+++|++|+|++|.+... ++. +..+++|++|++
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 4667777776655 2222 33 666777777777666655555666667777666654332 332 556666666666
Q ss_pred cCCCCCCcccccccCCCcccEEEccCCCCCcc--cCCCC-CCCCCcEEEccCCcCCCcCCCcCCCccEEecCCc-ccee-
Q 044579 650 FNCTNLVLVPSSIQNFNNLSMLCFRGCESLRS--FPRDI-HFVSPVTIDFSFCVNLTEFPKISGKITELNLCDT-AIEE- 724 (1103)
Q Consensus 650 ~~~~~l~~~~~~i~~l~~L~~L~L~~~~~l~~--lp~~~-~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~L~~~-~i~~- 724 (1103)
++|......+..++.+++|++|++++|..++. ++..+ .++ +|++|++++| .++.
T Consensus 126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~---------------------~L~~L~l~~~~~l~~~ 184 (336)
T 2ast_B 126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS---------------------RLDELNLSWCFDFTEK 184 (336)
T ss_dssp TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT---------------------TCCEEECCCCTTCCHH
T ss_pred cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCC---------------------CCCEEcCCCCCCcChH
Confidence 66654444555566666666666666533331 22211 222 3333333333 3331
Q ss_pred -cCccccCCC-CCCEEecCCCc--cc-ccccccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCC
Q 044579 725 -VPSSVECLT-NLKELYLSRCS--TL-NRLSTSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNK 799 (1103)
Q Consensus 725 -lp~~~~~l~-~L~~L~L~~~~--~~-~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~ 799 (1103)
++..+..++ +|++|+|++|. +. +.+|..+..+++|++|++++|..+.. ..+..+..+++|+.|+|++|.....
T Consensus 185 ~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~--~~~~~l~~l~~L~~L~l~~~~~~~~ 262 (336)
T 2ast_B 185 HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN--DCFQEFFQLNYLQHLSLSRCYDIIP 262 (336)
T ss_dssp HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCG--GGGGGGGGCTTCCEEECTTCTTCCG
T ss_pred HHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCH--HHHHHHhCCCCCCEeeCCCCCCCCH
Confidence 344455555 55555555552 22 33444455555555555555542221 1333445555555555555531110
Q ss_pred CCCCcccCCCCCCCEEeCCCC
Q 044579 800 LPHSIDFCCLSSLQWLDLSGN 820 (1103)
Q Consensus 800 lp~~~~~~~l~~L~~L~Ls~n 820 (1103)
.. ...+..+++|+.|+|++|
T Consensus 263 ~~-~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 263 ET-LLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GG-GGGGGGCTTCCEEECTTS
T ss_pred HH-HHHHhcCCCCCEEeccCc
Confidence 00 012334555555555555
No 92
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.71 E-value=2.6e-16 Score=172.02 Aligned_cols=198 Identities=21% Similarity=0.235 Sum_probs=114.4
Q ss_pred ceEEEEEcCCCCCCCCCcccccccccccccccccccccc-ccccCCcceEecCCCCCCCccCCC-CCCCCCccEEEecCC
Q 044579 575 KLRYLHWHGYPLKTLPFDFELENLIELRLPYSKVEQIWE-GKKEASKLKSIDLCHSQHLIRMPD-LSEIPNLERTNFFNC 652 (1103)
Q Consensus 575 ~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~-~~~~l~~L~~L~L~~~~~~~~~p~-l~~l~~L~~L~L~~~ 652 (1103)
.++.++++++.++.+|..+. .+|++|+|++|+++.++. .+..+++|++|+|++|.+....+. |..+++|++|++++|
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCCEEEccCCCCCccCCCCC-CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 45566777777777765442 566666677666666653 466666666666666654432222 455566666666554
Q ss_pred CCCCcccccccCCCcccEEEccCCCCCcccCCCCCCCCCcEEEccCCcCCCcCCCcCCCccEEecCCccceecCc-cccC
Q 044579 653 TNLVLVPSSIQNFNNLSMLCFRGCESLRSFPRDIHFVSPVTIDFSFCVNLTEFPKISGKITELNLCDTAIEEVPS-SVEC 731 (1103)
Q Consensus 653 ~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~-~~~~ 731 (1103)
......+..+..+++|++|++++ |.+..+|. .+..
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~--------------------------------------------n~l~~~~~~~~~~ 131 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDR--------------------------------------------NQLKSLPPRVFDS 131 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCS--------------------------------------------SCCCCCCTTTTTT
T ss_pred cCCcCCHhHcccccCCCEEECCC--------------------------------------------CccCeeCHHHhCc
Confidence 43322223344455555555544 33333332 3456
Q ss_pred CCCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccccCC-ccccCCCCCCeeeccCCCCCCCCCCCcccCCCC
Q 044579 732 LTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELP-SSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLS 810 (1103)
Q Consensus 732 l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp-~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~ 810 (1103)
+++|++|+|++|.+.+..+..+..+++|++|+|++|... .+| ..+..+++|++|+|++|.+. .+| +..+..++
T Consensus 132 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~N~l~-~~~-~~~~~~l~ 205 (270)
T 2o6q_A 132 LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK----RVPEGAFDKLTELKTLKLDNNQLK-RVP-EGAFDSLE 205 (270)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS----CCCTTTTTTCTTCCEEECCSSCCS-CCC-TTTTTTCT
T ss_pred CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc----EeChhHhccCCCcCEEECCCCcCC-cCC-HHHhcccc
Confidence 666666666666655544444666677777777665322 233 34666777777777777644 343 23456677
Q ss_pred CCCEEeCCCCCcc
Q 044579 811 SLQWLDLSGNNFE 823 (1103)
Q Consensus 811 ~L~~L~Ls~n~l~ 823 (1103)
+|+.|+|++|.+.
T Consensus 206 ~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 206 KLKMLQLQENPWD 218 (270)
T ss_dssp TCCEEECCSSCBC
T ss_pred CCCEEEecCCCee
Confidence 8888888887765
No 93
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.71 E-value=1.7e-18 Score=196.22 Aligned_cols=246 Identities=17% Similarity=0.193 Sum_probs=177.6
Q ss_pred cccceEEEecCCCCCccccCcceecCCCcccC-CCceEEEEEcCCCCCCCCCcc-ccccccccccccccccc--cccccc
Q 044579 541 SNLRLLKFYMPERGGVPIMSSKVHLDQGLEDL-PEKLRYLHWHGYPLKTLPFDF-ELENLIELRLPYSKVEQ--IWEGKK 616 (1103)
Q Consensus 541 ~~Lr~L~l~~n~~~~~~~~~~~~~l~~~l~~l-~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~i~~--l~~~~~ 616 (1103)
..++.++++++.+. +..+..+ ..+++.|++++|.+...+..+ .+++|++|+|++|.+.. ++..+.
T Consensus 47 ~~~~~l~l~~~~~~-----------~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~ 115 (336)
T 2ast_B 47 SLWQTLDLTGKNLH-----------PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILS 115 (336)
T ss_dssp TTSSEEECTTCBCC-----------HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHT
T ss_pred hhheeeccccccCC-----------HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHh
Confidence 45889999877542 1122222 248999999999988765544 89999999999999873 778889
Q ss_pred cCCcceEecCCCCCCCccCC-CCCCCCCccEEEecCCCCCCc--ccccccCCCcccEEEccCCCCCcc--cCCCC-CCC-
Q 044579 617 EASKLKSIDLCHSQHLIRMP-DLSEIPNLERTNFFNCTNLVL--VPSSIQNFNNLSMLCFRGCESLRS--FPRDI-HFV- 689 (1103)
Q Consensus 617 ~l~~L~~L~L~~~~~~~~~p-~l~~l~~L~~L~L~~~~~l~~--~~~~i~~l~~L~~L~L~~~~~l~~--lp~~~-~l~- 689 (1103)
.+++|++|+|++|.+....+ .++.+++|++|++++|..+.. ++..+.++++|++|++++|..+.. ++..+ .++
T Consensus 116 ~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~ 195 (336)
T 2ast_B 116 QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE 195 (336)
T ss_dssp TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCT
T ss_pred hCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhccc
Confidence 99999999999998665554 378899999999999966663 677788999999999999855543 33322 344
Q ss_pred CCcEEEccCCcCCCcCCCcCCCccEEecCCccc--eecCccccCCCCCCEEecCCCc-ccccccccccCCCCCcEEeecC
Q 044579 690 SPVTIDFSFCVNLTEFPKISGKITELNLCDTAI--EEVPSSVECLTNLKELYLSRCS-TLNRLSTSICKLKSLHELILSD 766 (1103)
Q Consensus 690 ~L~~L~l~~c~~l~~~~~~~~~L~~L~L~~~~i--~~lp~~~~~l~~L~~L~L~~~~-~~~~lp~~l~~l~~L~~L~L~~ 766 (1103)
+|++|++++|.. .+ ..+|..+..+++|+.|+|++|. +....+..+..+++|++|++++
T Consensus 196 ~L~~L~l~~~~~-------------------~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~ 256 (336)
T 2ast_B 196 TITQLNLSGYRK-------------------NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSR 256 (336)
T ss_dssp TCCEEECCSCGG-------------------GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred CCCEEEeCCCcc-------------------cCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCC
Confidence 455555544420 22 3567777889999999999998 5667777899999999999999
Q ss_pred CCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcccCCC-CCCCEEeCCCCCccc
Q 044579 767 CLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCL-SSLQWLDLSGNNFES 824 (1103)
Q Consensus 767 ~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l-~~L~~L~Ls~n~l~~ 824 (1103)
|..... .....+.++++|+.|+|++| ++. ..+..+ .+|..|++++|+++.
T Consensus 257 ~~~~~~--~~~~~l~~~~~L~~L~l~~~-----i~~-~~~~~l~~~l~~L~l~~n~l~~ 307 (336)
T 2ast_B 257 CYDIIP--ETLLELGEIPTLKTLQVFGI-----VPD-GTLQLLKEALPHLQINCSHFTT 307 (336)
T ss_dssp CTTCCG--GGGGGGGGCTTCCEEECTTS-----SCT-TCHHHHHHHSTTSEESCCCSCC
T ss_pred CCCCCH--HHHHHHhcCCCCCEEeccCc-----cCH-HHHHHHHhhCcceEEecccCcc
Confidence 863221 11235778999999999998 221 112222 235556667777763
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.70 E-value=8.3e-19 Score=202.76 Aligned_cols=246 Identities=14% Similarity=0.097 Sum_probs=147.8
Q ss_pred CCCCCCcc-ccccccccccccccccc-----cccccccCCcceEecCCCCCCC---ccCCC--------CCCCCCccEEE
Q 044579 586 LKTLPFDF-ELENLIELRLPYSKVEQ-----IWEGKKEASKLKSIDLCHSQHL---IRMPD--------LSEIPNLERTN 648 (1103)
Q Consensus 586 l~~lp~~~-~l~~L~~L~L~~n~i~~-----l~~~~~~l~~L~~L~L~~~~~~---~~~p~--------l~~l~~L~~L~ 648 (1103)
+..++..+ .+++|++|+|++|.+.. ++..+..+++|++|+|++|... ..+|. +..+++|++|+
T Consensus 21 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 21 EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp HHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence 33444433 45566666666666553 2334555666666666665321 12221 24555666666
Q ss_pred ecCCCCCC----cccccccCCCcccEEEccCCCCCcccCCCCCCCCCcEEEccCCcCCCcCCCcC------------CCc
Q 044579 649 FFNCTNLV----LVPSSIQNFNNLSMLCFRGCESLRSFPRDIHFVSPVTIDFSFCVNLTEFPKIS------------GKI 712 (1103)
Q Consensus 649 L~~~~~l~----~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~~~~~------------~~L 712 (1103)
|++|.... .+|..+..+++|++|+|++|..-...+. .++..+ .+|
T Consensus 101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~-------------------~l~~~l~~l~~~~~~~~~~~L 161 (386)
T 2ca6_A 101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGA-------------------KIARALQELAVNKKAKNAPPL 161 (386)
T ss_dssp CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHH-------------------HHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHH-------------------HHHHHHHHHhhhhhcccCCCC
Confidence 66554433 2444555555666666655432111010 011111 466
Q ss_pred cEEecCCccce--ecC---ccccCCCCCCEEecCCCcccc-----cccccccCCCCCcEEeecCCCCCCc-cccCCcccc
Q 044579 713 TELNLCDTAIE--EVP---SSVECLTNLKELYLSRCSTLN-----RLSTSICKLKSLHELILSDCLSLET-ITELPSSFA 781 (1103)
Q Consensus 713 ~~L~L~~~~i~--~lp---~~~~~l~~L~~L~L~~~~~~~-----~lp~~l~~l~~L~~L~L~~~~~l~~-i~~lp~~~~ 781 (1103)
++|++++|.+. .+| ..+..+++|++|+|++|.+.. ..|..+..+++|+.|+|++|..... ...+|..+.
T Consensus 162 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~ 241 (386)
T 2ca6_A 162 RSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK 241 (386)
T ss_dssp CEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG
T ss_pred cEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHc
Confidence 77777777664 344 456778888888888887652 3444778888888888888753200 133677778
Q ss_pred CCCCCCeeeccCCCCCCC----CCCCcccCCCCCCCEEeCCCCCccc-----cCccc-cCCCCCCEEeccCCcCCcccC
Q 044579 782 NLEGLEKLVLVGCSKLNK----LPHSIDFCCLSSLQWLDLSGNNFES-----LPSSI-KQLSQLRKLDLSNCNMLLSLP 850 (1103)
Q Consensus 782 ~l~~L~~L~L~~~~~~~~----lp~~~~~~~l~~L~~L~Ls~n~l~~-----lp~~i-~~l~~L~~L~L~~n~~l~~lp 850 (1103)
.+++|+.|+|++|.+... ++.....+.+++|+.|+|++|.++. +|..+ .++++|+.|+|++|++.+..|
T Consensus 242 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 242 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred cCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 888888888888886543 2111111347889999999998886 88777 668889999999888776553
No 95
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.70 E-value=3.6e-17 Score=182.77 Aligned_cols=108 Identities=21% Similarity=0.217 Sum_probs=67.4
Q ss_pred cCCCCCCEEecCCCcccccccc----cccCCCCCcEEeecCCCCCCccccCCccccCC---CCCCeeeccCCCCCCCCCC
Q 044579 730 ECLTNLKELYLSRCSTLNRLST----SICKLKSLHELILSDCLSLETITELPSSFANL---EGLEKLVLVGCSKLNKLPH 802 (1103)
Q Consensus 730 ~~l~~L~~L~L~~~~~~~~lp~----~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l---~~L~~L~L~~~~~~~~lp~ 802 (1103)
..+++|++|+|++|.+. .++. .+..+++|++|+|++|..... .|..+..+ ++|++|+|++|.+. .+|.
T Consensus 194 ~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~---~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~ 268 (310)
T 4glp_A 194 HKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRAT---VNPSAPRCMWSSALNSLNLSFAGLE-QVPK 268 (310)
T ss_dssp TSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCC---CCSCCSSCCCCTTCCCEECCSSCCC-SCCS
T ss_pred hcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCcc---chhhHHhccCcCcCCEEECCCCCCC-chhh
Confidence 45556666666666543 1221 134556666666666543222 24444444 57777777777755 5543
Q ss_pred CcccCCCCCCCEEeCCCCCccccCccccCCCCCCEEeccCCcCCc
Q 044579 803 SIDFCCLSSLQWLDLSGNNFESLPSSIKQLSQLRKLDLSNCNMLL 847 (1103)
Q Consensus 803 ~~~~~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~l~ 847 (1103)
.. .++|+.|+|++|+++.+|. +..+++|+.|+|++|++..
T Consensus 269 ~~----~~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 269 GL----PAKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CC----CSCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTSC
T ss_pred hh----cCCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCCCC
Confidence 22 2788888888888887765 6778888888888887653
No 96
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.69 E-value=1.4e-16 Score=177.59 Aligned_cols=195 Identities=17% Similarity=0.235 Sum_probs=116.9
Q ss_pred ceEEEEEcCCCCCCCCCccccccccccccccccccccccccccCCcceEecCCCCCCCccCCCCCCCCCccEEEecCCCC
Q 044579 575 KLRYLHWHGYPLKTLPFDFELENLIELRLPYSKVEQIWEGKKEASKLKSIDLCHSQHLIRMPDLSEIPNLERTNFFNCTN 654 (1103)
Q Consensus 575 ~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~~~~ 654 (1103)
+|+.|++++|.++.+|....+++|++|+|++|.++.++. +..+++|++|+|++|.+ ..++.+..+++|++|++++|..
T Consensus 42 ~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l-~~~~~~~~l~~L~~L~l~~n~l 119 (308)
T 1h6u_A 42 GITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPL-KNVSAIAGLQSIKTLDLTSTQI 119 (308)
T ss_dssp TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCC-SCCGGGTTCTTCCEEECTTSCC
T ss_pred CcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcC-CCchhhcCCCCCCEEECCCCCC
Confidence 455555555555555543355666666666666666555 56666666666666653 2334455555555555555432
Q ss_pred CCcccccccCCCcccEEEccCCCCCcccCCCCCCCCCcEEEccCCcCCCcCCCcCCCccEEecCCccceecCccccCCCC
Q 044579 655 LVLVPSSIQNFNNLSMLCFRGCESLRSFPRDIHFVSPVTIDFSFCVNLTEFPKISGKITELNLCDTAIEEVPSSVECLTN 734 (1103)
Q Consensus 655 l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~ 734 (1103)
..++. +..+++|+.|++++ |.+..++. +..+++
T Consensus 120 -~~~~~-l~~l~~L~~L~l~~--------------------------------------------n~l~~~~~-l~~l~~ 152 (308)
T 1h6u_A 120 -TDVTP-LAGLSNLQVLYLDL--------------------------------------------NQITNISP-LAGLTN 152 (308)
T ss_dssp -CCCGG-GTTCTTCCEEECCS--------------------------------------------SCCCCCGG-GGGCTT
T ss_pred -CCchh-hcCCCCCCEEECCC--------------------------------------------CccCcCcc-ccCCCC
Confidence 22222 44444444444444 33444433 566777
Q ss_pred CCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCE
Q 044579 735 LKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQW 814 (1103)
Q Consensus 735 L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~ 814 (1103)
|+.|+|++|.+.+. +. +..+++|+.|++++|.. ..++. +..+++|+.|+|++|.+.+ ++ .+..+++|+.
T Consensus 153 L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l----~~~~~-l~~l~~L~~L~L~~N~l~~-~~---~l~~l~~L~~ 221 (308)
T 1h6u_A 153 LQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKI----SDISP-LASLPNLIEVHLKNNQISD-VS---PLANTSNLFI 221 (308)
T ss_dssp CCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCC----CCCGG-GGGCTTCCEEECTTSCCCB-CG---GGTTCTTCCE
T ss_pred ccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCcc----CcChh-hcCCCCCCEEEccCCccCc-cc---cccCCCCCCE
Confidence 77777777765543 33 67777777777777643 22333 6778888888888887543 32 2567889999
Q ss_pred EeCCCCCccccCccc
Q 044579 815 LDLSGNNFESLPSSI 829 (1103)
Q Consensus 815 L~Ls~n~l~~lp~~i 829 (1103)
|+|++|.++..|..+
T Consensus 222 L~l~~N~i~~~~~~~ 236 (308)
T 1h6u_A 222 VTLTNQTITNQPVFY 236 (308)
T ss_dssp EEEEEEEEECCCEEC
T ss_pred EEccCCeeecCCeee
Confidence 999999888777543
No 97
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.68 E-value=1.1e-18 Score=214.00 Aligned_cols=333 Identities=14% Similarity=0.060 Sum_probs=225.7
Q ss_pred cccCCCCcceee----chHhhhcCcccceEEEecCCCCCccccCcceecCCCcccCCCceEEEEEcCCCCCCCCCcc-cc
Q 044579 521 FLDLSKTKDIHL----SSQAFANMSNLRLLKFYMPERGGVPIMSSKVHLDQGLEDLPEKLRYLHWHGYPLKTLPFDF-EL 595 (1103)
Q Consensus 521 ~L~l~~~~~~~~----~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~l 595 (1103)
.|+++++..... -...+.++++|+.|++++|.+.+.. ...++..+..++ +|+.|++++|.+..+|..+ .+
T Consensus 168 ~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~----~~~l~~~~~~~~-~L~~L~L~~~~~~~l~~~~~~~ 242 (592)
T 3ogk_B 168 TLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKIS----PKDLETIARNCR-SLVSVKVGDFEILELVGFFKAA 242 (592)
T ss_dssp EEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCC----HHHHHHHHHHCT-TCCEEECSSCBGGGGHHHHHHC
T ss_pred EEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccC----HHHHHHHHhhCC-CCcEEeccCccHHHHHHHHhhh
Confidence 456666654333 2345678999999999988764211 112222233344 8999999999998888666 78
Q ss_pred ccccccccccccc----cccccccccCCcceEecCCCCCCCccCCC-CCCCCCccEEEecCCCCCCc-ccccccCCCccc
Q 044579 596 ENLIELRLPYSKV----EQIWEGKKEASKLKSIDLCHSQHLIRMPD-LSEIPNLERTNFFNCTNLVL-VPSSIQNFNNLS 669 (1103)
Q Consensus 596 ~~L~~L~L~~n~i----~~l~~~~~~l~~L~~L~L~~~~~~~~~p~-l~~l~~L~~L~L~~~~~l~~-~~~~i~~l~~L~ 669 (1103)
++|++|+++.... ...+..+..+++|+.|+++++. ...+|. +..+++|++|++++|..... ++..+..+++|+
T Consensus 243 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~ 321 (592)
T 3ogk_B 243 ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLE 321 (592)
T ss_dssp TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCC
T ss_pred hHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCC
Confidence 9999999985332 2344567888999999998864 333443 67899999999999883222 224468899999
Q ss_pred EEEccCCCCCcccCCCC-CCCCCcEEEccC----------CcCCCcC-----CCcCCCccEEecCCccce-ecCccccC-
Q 044579 670 MLCFRGCESLRSFPRDI-HFVSPVTIDFSF----------CVNLTEF-----PKISGKITELNLCDTAIE-EVPSSVEC- 731 (1103)
Q Consensus 670 ~L~L~~~~~l~~lp~~~-~l~~L~~L~l~~----------c~~l~~~-----~~~~~~L~~L~L~~~~i~-~lp~~~~~- 731 (1103)
.|+++++..-..++... .+++|++|++++ |+.+... ....++|++|++..+.++ ..+..+..
T Consensus 322 ~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~ 401 (592)
T 3ogk_B 322 VLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTY 401 (592)
T ss_dssp EEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHH
T ss_pred EEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhh
Confidence 99998542222233222 578899999995 7666531 234678999999888776 33344544
Q ss_pred CCCCCEEecCC---Cccccc------ccccccCCCCCcEEeecCCCC-CCccccCCccc-cCCCCCCeeeccCCCCCCCC
Q 044579 732 LTNLKELYLSR---CSTLNR------LSTSICKLKSLHELILSDCLS-LETITELPSSF-ANLEGLEKLVLVGCSKLNKL 800 (1103)
Q Consensus 732 l~~L~~L~L~~---~~~~~~------lp~~l~~l~~L~~L~L~~~~~-l~~i~~lp~~~-~~l~~L~~L~L~~~~~~~~l 800 (1103)
+++|+.|++++ |+..+. ++..+.++++|++|+|+.|.. +.. ..+..+ ..+++|+.|+|++|.+.+..
T Consensus 402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~--~~~~~~~~~~~~L~~L~L~~n~l~~~~ 479 (592)
T 3ogk_B 402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTD--LGLSYIGQYSPNVRWMLLGYVGESDEG 479 (592)
T ss_dssp CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCH--HHHHHHHHSCTTCCEEEECSCCSSHHH
T ss_pred CCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccH--HHHHHHHHhCccceEeeccCCCCCHHH
Confidence 89999999973 333333 344467899999999987653 111 112222 45889999999999855311
Q ss_pred CCCcccCCCCCCCEEeCCCCCcc--ccCccccCCCCCCEEeccCCcCCcccCc-cccccccceec
Q 044579 801 PHSIDFCCLSSLQWLDLSGNNFE--SLPSSIKQLSQLRKLDLSNCNMLLSLPE-LPLFLEDLEAR 862 (1103)
Q Consensus 801 p~~~~~~~l~~L~~L~Ls~n~l~--~lp~~i~~l~~L~~L~L~~n~~l~~lp~-~~~~L~~L~~~ 862 (1103)
. +..+..+++|+.|+|++|.++ .++..+..+++|+.|+|++|++...-.. +...++.|.+.
T Consensus 480 ~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~ 543 (592)
T 3ogk_B 480 L-MEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIE 543 (592)
T ss_dssp H-HHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEE
T ss_pred H-HHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEE
Confidence 0 223466899999999999987 3566667899999999999996654222 22344444443
No 98
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.67 E-value=2.8e-16 Score=168.40 Aligned_cols=175 Identities=20% Similarity=0.227 Sum_probs=118.4
Q ss_pred CCCceEEEEEcCCCCCCCCCc-c-cccccccccccccc-cccccc-ccccCCcceEecCCC-CCCCccCC-CCCCCCCcc
Q 044579 572 LPEKLRYLHWHGYPLKTLPFD-F-ELENLIELRLPYSK-VEQIWE-GKKEASKLKSIDLCH-SQHLIRMP-DLSEIPNLE 645 (1103)
Q Consensus 572 l~~~Lr~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~-i~~l~~-~~~~l~~L~~L~L~~-~~~~~~~p-~l~~l~~L~ 645 (1103)
++.+|++|++++|.++.+|.. + .+++|++|+|++|. ++.++. .+..+++|++|+|++ |.+....+ .|.++++|+
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 566899999999999999874 4 79999999999997 998886 688999999999998 77554444 378999999
Q ss_pred EEEecCCCCCCcccccccCCCccc---EEEccCCCCCcccCCCCCCCCCcEEEccCCcCCCcCCCcCCCcc-EEecCCcc
Q 044579 646 RTNFFNCTNLVLVPSSIQNFNNLS---MLCFRGCESLRSFPRDIHFVSPVTIDFSFCVNLTEFPKISGKIT-ELNLCDTA 721 (1103)
Q Consensus 646 ~L~L~~~~~l~~~~~~i~~l~~L~---~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~-~L~L~~~~ 721 (1103)
+|++++|. +..+|. +..+++|+ .|++++|..+..+|... -....+|+ .|++++|.
T Consensus 109 ~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~-------------------~~~l~~L~~~L~l~~n~ 167 (239)
T 2xwt_C 109 FLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNA-------------------FQGLCNETLTLKLYNNG 167 (239)
T ss_dssp EEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTT-------------------TTTTBSSEEEEECCSCC
T ss_pred EEeCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCccc-------------------ccchhcceeEEEcCCCC
Confidence 99999976 445776 77777777 78887764555544321 00112344 45555555
Q ss_pred ceecCccccCCCCCCEEecCCCc-ccccccccccCC-CCCcEEeecCC
Q 044579 722 IEEVPSSVECLTNLKELYLSRCS-TLNRLSTSICKL-KSLHELILSDC 767 (1103)
Q Consensus 722 i~~lp~~~~~l~~L~~L~L~~~~-~~~~lp~~l~~l-~~L~~L~L~~~ 767 (1103)
++.+|......++|+.|+|++|. +....+..+..+ ++|+.|++++|
T Consensus 168 l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N 215 (239)
T 2xwt_C 168 FTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT 215 (239)
T ss_dssp CCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC
T ss_pred CcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC
Confidence 55555543333555555555553 333223344444 55555555543
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.66 E-value=5.7e-16 Score=176.15 Aligned_cols=234 Identities=20% Similarity=0.171 Sum_probs=151.1
Q ss_pred cccccccccccccccccccCCcceEecCCCCCCCccCCC-CCCCCCccEEEecCCCCCCcccc-cccCCCcccEEEccCC
Q 044579 599 IELRLPYSKVEQIWEGKKEASKLKSIDLCHSQHLIRMPD-LSEIPNLERTNFFNCTNLVLVPS-SIQNFNNLSMLCFRGC 676 (1103)
Q Consensus 599 ~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~p~-l~~l~~L~~L~L~~~~~l~~~~~-~i~~l~~L~~L~L~~~ 676 (1103)
++++.++++++.+|..+ .++++.|+|++|++....+. |.++++|++|+|++|..+..+|. .+.++++|..+.+.++
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 46777888899998876 36889999999986544443 88899999999999887776664 5678888877666555
Q ss_pred CCCcccCCCC--CCCCCcEEEccCCcCCCcCCCcCCCccEEecCCccceecCc-cccCCCCCCEEecCCCcccccccc-c
Q 044579 677 ESLRSFPRDI--HFVSPVTIDFSFCVNLTEFPKISGKITELNLCDTAIEEVPS-SVECLTNLKELYLSRCSTLNRLST-S 752 (1103)
Q Consensus 677 ~~l~~lp~~~--~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~-~ 752 (1103)
+.+..+|... .+++|++|++ ++|.+..+|. .+....++..|++.++.....+|. .
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l---------------------~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~ 148 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLI---------------------SNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS 148 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEE---------------------EEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTS
T ss_pred CcccccCchhhhhccccccccc---------------------cccccccCCchhhcccchhhhhhhccccccccccccc
Confidence 6666665432 4445554444 4444544443 233445566666665544444443 3
Q ss_pred ccCCC-CCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCccccCccccC
Q 044579 753 ICKLK-SLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESLPSSIKQ 831 (1103)
Q Consensus 753 l~~l~-~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~lp~~i~~ 831 (1103)
+..+. .|+.|+|++|. +..+|.......+|+.|++.+|+.++.+| ...+..+++|+.|+|++|+|+.+|.. .
T Consensus 149 f~~~~~~l~~L~L~~N~----i~~i~~~~f~~~~L~~l~l~~~n~l~~i~-~~~f~~l~~L~~LdLs~N~l~~lp~~--~ 221 (350)
T 4ay9_X 149 FVGLSFESVILWLNKNG----IQEIHNSAFNGTQLDELNLSDNNNLEELP-NDVFHGASGPVILDISRTRIHSLPSY--G 221 (350)
T ss_dssp STTSBSSCEEEECCSSC----CCEECTTSSTTEEEEEEECTTCTTCCCCC-TTTTTTEECCSEEECTTSCCCCCCSS--S
T ss_pred hhhcchhhhhhcccccc----ccCCChhhccccchhHHhhccCCcccCCC-HHHhccCcccchhhcCCCCcCccChh--h
Confidence 44443 56677777743 33456665566677777777766666775 34466777788888888887777753 3
Q ss_pred CCCCCEEeccCCcCCcccCccccccccceecc
Q 044579 832 LSQLRKLDLSNCNMLLSLPELPLFLEDLEARN 863 (1103)
Q Consensus 832 l~~L~~L~L~~n~~l~~lp~~~~~L~~L~~~~ 863 (1103)
+.+|+.|.+.+|..++.+|. +.+|..|...+
T Consensus 222 ~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~ 252 (350)
T 4ay9_X 222 LENLKKLRARSTYNLKKLPT-LEKLVALMEAS 252 (350)
T ss_dssp CTTCCEEECTTCTTCCCCCC-TTTCCSCCEEE
T ss_pred hccchHhhhccCCCcCcCCC-chhCcChhhCc
Confidence 56677777777777777774 33344444433
No 100
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.66 E-value=2.1e-15 Score=166.30 Aligned_cols=149 Identities=24% Similarity=0.215 Sum_probs=104.9
Q ss_pred CCccEEecCCccceecCccccCCCCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccccCC-ccccCCCCCCe
Q 044579 710 GKITELNLCDTAIEEVPSSVECLTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELP-SSFANLEGLEK 788 (1103)
Q Consensus 710 ~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp-~~~~~l~~L~~ 788 (1103)
.+|+.|+|++|.++.+|.. +.+++|+.|+|++|.+. .+|..+..+++|++|+|++|... .+| ..+..+++|++
T Consensus 55 ~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~----~l~~~~~~~l~~L~~ 128 (290)
T 1p9a_G 55 TRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT----SLPLGALRGLGELQE 128 (290)
T ss_dssp TTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCC----CCCSSTTTTCTTCCE
T ss_pred CCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCc----ccCHHHHcCCCCCCE
Confidence 4566777777777777664 77888888888888654 67777888888888888886433 344 56788888888
Q ss_pred eeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCccccCccc-cCCCCCCEEeccCCcCCcccCccccccccceecccccc
Q 044579 789 LVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESLPSSI-KQLSQLRKLDLSNCNMLLSLPELPLFLEDLEARNCKRL 867 (1103)
Q Consensus 789 L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~lp~~i-~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~~~~c~~l 867 (1103)
|+|++|.+. .+| +..+..+++|+.|+|++|+++.+|..+ ..+++|+.|+|++|++. .+|..+..+..|...++.+|
T Consensus 129 L~L~~N~l~-~~~-~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 129 LYLKGNELK-TLP-PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp EECTTSCCC-CCC-TTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSC
T ss_pred EECCCCCCC-ccC-hhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCC
Confidence 888888755 343 344567788888888888888887654 67888888888888754 56655444444444443333
No 101
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.63 E-value=2.6e-18 Score=210.92 Aligned_cols=111 Identities=14% Similarity=0.147 Sum_probs=50.0
Q ss_pred CCCCCEEecCCCccccccccccc-CCCCCcEEeec-----CCCCCCcc---ccCCccccCCCCCCeeeccCCCCCCCCCC
Q 044579 732 LTNLKELYLSRCSTLNRLSTSIC-KLKSLHELILS-----DCLSLETI---TELPSSFANLEGLEKLVLVGCSKLNKLPH 802 (1103)
Q Consensus 732 l~~L~~L~L~~~~~~~~lp~~l~-~l~~L~~L~L~-----~~~~l~~i---~~lp~~~~~l~~L~~L~L~~~~~~~~lp~ 802 (1103)
+++|+.|.+..|.+....+..+. .+++|+.|+++ +|..++.. ..++..+..+++|+.|+|++ .+....
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~-- 447 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKV-- 447 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHH--
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHH--
Confidence 55555555544444433333333 35666666665 23222210 01111244555666666644 211111
Q ss_pred CcccC-CCCCCCEEeCCCCCccc--cCccccCCCCCCEEeccCCcC
Q 044579 803 SIDFC-CLSSLQWLDLSGNNFES--LPSSIKQLSQLRKLDLSNCNM 845 (1103)
Q Consensus 803 ~~~~~-~l~~L~~L~Ls~n~l~~--lp~~i~~l~~L~~L~L~~n~~ 845 (1103)
...+. .+++|+.|+|++|.++. ++.....+++|+.|+|++|++
T Consensus 448 ~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 448 FEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp HHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred HHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 00111 24566666666666541 222224456666666666665
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.63 E-value=9.2e-16 Score=183.49 Aligned_cols=195 Identities=19% Similarity=0.222 Sum_probs=145.1
Q ss_pred hhhcCc-----ccceEEEecCCCCCccccCcceecCCCcccCCCceEEEEEcCCCCCCCCCccccccccccccccccccc
Q 044579 536 AFANMS-----NLRLLKFYMPERGGVPIMSSKVHLDQGLEDLPEKLRYLHWHGYPLKTLPFDFELENLIELRLPYSKVEQ 610 (1103)
Q Consensus 536 ~f~~l~-----~Lr~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~ 610 (1103)
+|.+++ +|+.|++++|.+.+ +|..+ +.+|++|++++|.++.+| ..+++|++|+|++|+++.
T Consensus 49 ~~~~l~~C~~~~L~~L~Ls~n~L~~---------lp~~l---~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ 114 (571)
T 3cvr_A 49 AVSLLKECLINQFSELQLNRLNLSS---------LPDNL---PPQITVLEITQNALISLP--ELPASLEYLDACDNRLST 114 (571)
T ss_dssp HHHHHHHHHHTTCSEEECCSSCCSC---------CCSCC---CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC
T ss_pred hhhhccccccCCccEEEeCCCCCCc---------cCHhH---cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC
Confidence 455555 89999999886642 44433 247999999999999999 447899999999999998
Q ss_pred cccccccCCcceEecCCCCCCCccCCCCCCCCCccEEEecCCCCCCcccccccCCCcccEEEccCCCCCcccCCCCCCCC
Q 044579 611 IWEGKKEASKLKSIDLCHSQHLIRMPDLSEIPNLERTNFFNCTNLVLVPSSIQNFNNLSMLCFRGCESLRSFPRDIHFVS 690 (1103)
Q Consensus 611 l~~~~~~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~ 690 (1103)
+|. +.. +|++|+|++|.+.. +|. .+++|+.|++++|.. ..+|. .+++|+.|+|++|. ++.+|. +. ++
T Consensus 115 ip~-l~~--~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~l-~~lp~---~l~~L~~L~Ls~N~-L~~lp~-l~-~~ 181 (571)
T 3cvr_A 115 LPE-LPA--SLKHLDVDNNQLTM-LPE--LPALLEYINADNNQL-TMLPE---LPTSLEVLSVRNNQ-LTFLPE-LP-ES 181 (571)
T ss_dssp CCC-CCT--TCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCC-SCCCC---CCTTCCEEECCSSC-CSCCCC-CC-TT
T ss_pred cch-hhc--CCCEEECCCCcCCC-CCC--cCccccEEeCCCCcc-CcCCC---cCCCcCEEECCCCC-CCCcch-hh-CC
Confidence 887 554 89999999998655 666 788999999998754 44766 57889999998864 555777 54 78
Q ss_pred CcEEEccCCcCCCcCCCcCCCc-------cEEecCCccceecCccccCCCCCCEEecCCCcccccccccccCCCC
Q 044579 691 PVTIDFSFCVNLTEFPKISGKI-------TELNLCDTAIEEVPSSVECLTNLKELYLSRCSTLNRLSTSICKLKS 758 (1103)
Q Consensus 691 L~~L~l~~c~~l~~~~~~~~~L-------~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~ 758 (1103)
|+.|++++| .++.+|....+| +.|+|++|.|+.+|..+..+++|+.|+|++|.+.+.+|..++.+++
T Consensus 182 L~~L~Ls~N-~L~~lp~~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 182 LEALDVSTN-LLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CCEEECCSS-CCSSCCCCC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred CCEEECcCC-CCCchhhHHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 888888875 455666644466 7778888888777777777778888888887777777776665443
No 103
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.63 E-value=2.4e-16 Score=176.10 Aligned_cols=156 Identities=24% Similarity=0.217 Sum_probs=112.6
Q ss_pred CCccEEecCCccceecC-ccccCCCCCCEEecCCCccccc--cc--ccccCCCCCcEEeecCCCCCCccccCCc-cccCC
Q 044579 710 GKITELNLCDTAIEEVP-SSVECLTNLKELYLSRCSTLNR--LS--TSICKLKSLHELILSDCLSLETITELPS-SFANL 783 (1103)
Q Consensus 710 ~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~~~~~--lp--~~l~~l~~L~~L~L~~~~~l~~i~~lp~-~~~~l 783 (1103)
.+|++|+|++|.+..+| ..+..+++|++|+|++|.+.+. ++ ..+..+++|++|+|++|.. ..+...+. .++.+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHHHHhcC
Confidence 34555666666666554 4678899999999999987653 32 3347899999999999854 22222222 25788
Q ss_pred CCCCeeeccCCCCCCCCCCCc-ccCCCCCCCEEeCCCCCccccCccccCCCCCCEEeccCCcCCcccCccccccccceec
Q 044579 784 EGLEKLVLVGCSKLNKLPHSI-DFCCLSSLQWLDLSGNNFESLPSSIKQLSQLRKLDLSNCNMLLSLPELPLFLEDLEAR 862 (1103)
Q Consensus 784 ~~L~~L~L~~~~~~~~lp~~~-~~~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~~~ 862 (1103)
++|++|+|++|.+....|... .+..+++|++|+|++|.++.+|..+. ++|+.|+|++|++.+. |. +..+..|..+
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L 299 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNL 299 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCE
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEE
Confidence 999999999999877665322 12224799999999999999998775 8999999999997753 43 4556666666
Q ss_pred cccccccc
Q 044579 863 NCKRLQFL 870 (1103)
Q Consensus 863 ~c~~l~~~ 870 (1103)
++.+|.+.
T Consensus 300 ~L~~N~l~ 307 (310)
T 4glp_A 300 TLDGNPFL 307 (310)
T ss_dssp ECSSTTTS
T ss_pred ECcCCCCC
Confidence 66776654
No 104
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.62 E-value=1.3e-17 Score=192.66 Aligned_cols=242 Identities=17% Similarity=0.122 Sum_probs=168.9
Q ss_pred cCCCcccCCCceEEEEEcCCCCCCC-----CCcc-ccccccccccccccccc----ccccc-------ccCCcceEecCC
Q 044579 565 LDQGLEDLPEKLRYLHWHGYPLKTL-----PFDF-ELENLIELRLPYSKVEQ----IWEGK-------KEASKLKSIDLC 627 (1103)
Q Consensus 565 l~~~l~~l~~~Lr~L~l~~~~l~~l-----p~~~-~l~~L~~L~L~~n~i~~----l~~~~-------~~l~~L~~L~L~ 627 (1103)
++..+..++ +|++|++++|.+... +..+ .+++|++|+|++|.+.. +|.++ ..+++|++|+|+
T Consensus 24 l~~~l~~~~-~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 24 VFAVLLEDD-SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TSHHHHHCS-CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHhcCC-CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 444455555 799999999988753 2223 68899999999986553 34443 688999999999
Q ss_pred CCCCCc----cCC-CCCCCCCccEEEecCCCCCCc----ccccccCC---------CcccEEEccCCCCC-cccCCCCCC
Q 044579 628 HSQHLI----RMP-DLSEIPNLERTNFFNCTNLVL----VPSSIQNF---------NNLSMLCFRGCESL-RSFPRDIHF 688 (1103)
Q Consensus 628 ~~~~~~----~~p-~l~~l~~L~~L~L~~~~~l~~----~~~~i~~l---------~~L~~L~L~~~~~l-~~lp~~~~l 688 (1103)
+|.+.. .+| .+..+++|++|+|++|..... ++..+..+ ++|++|++++|..- ..+|...
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~-- 180 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA-- 180 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH--
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH--
Confidence 998765 234 378899999999999876432 33334444 88888888887533 2222100
Q ss_pred CCCcEEEccCCcCCCcCCCcCCCccEEecCCccce------ecCccccCCCCCCEEecCCCccc----ccccccccCCCC
Q 044579 689 VSPVTIDFSFCVNLTEFPKISGKITELNLCDTAIE------EVPSSVECLTNLKELYLSRCSTL----NRLSTSICKLKS 758 (1103)
Q Consensus 689 ~~L~~L~l~~c~~l~~~~~~~~~L~~L~L~~~~i~------~lp~~~~~l~~L~~L~L~~~~~~----~~lp~~l~~l~~ 758 (1103)
..-....+|++|++++|.+. -+|..+..+++|+.|+|++|.+. ..+|..+..+++
T Consensus 181 ---------------~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~ 245 (386)
T 2ca6_A 181 ---------------KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 245 (386)
T ss_dssp ---------------HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTT
T ss_pred ---------------HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCC
Confidence 00001235666666666666 23447888999999999999875 677888899999
Q ss_pred CcEEeecCCCCCCc-cccCCccc--cCCCCCCeeeccCCCCCC----CCCCCccc-CCCCCCCEEeCCCCCccccC
Q 044579 759 LHELILSDCLSLET-ITELPSSF--ANLEGLEKLVLVGCSKLN----KLPHSIDF-CCLSSLQWLDLSGNNFESLP 826 (1103)
Q Consensus 759 L~~L~L~~~~~l~~-i~~lp~~~--~~l~~L~~L~L~~~~~~~----~lp~~~~~-~~l~~L~~L~Ls~n~l~~lp 826 (1103)
|++|+|++|..... ...+|..+ +.+++|+.|+|++|.+.. .+| ..+ .++++|+.|+|++|.++...
T Consensus 246 L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~--~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 246 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK--TVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHH--HHHHHHCTTCCEEECTTSBSCTTS
T ss_pred cCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHH--HHHHhcCCCceEEEccCCcCCcch
Confidence 99999999863321 11245555 348999999999998765 353 223 45799999999999988554
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.62 E-value=2.9e-15 Score=179.16 Aligned_cols=187 Identities=18% Similarity=0.205 Sum_probs=132.1
Q ss_pred cceEecCCCCCCCccCCC-CCCCCCccEEEecCCCCCCcccccccCCCcccEEEccCCCCCcccCCCCCCCCCcEEEccC
Q 044579 620 KLKSIDLCHSQHLIRMPD-LSEIPNLERTNFFNCTNLVLVPSSIQNFNNLSMLCFRGCESLRSFPRDIHFVSPVTIDFSF 698 (1103)
Q Consensus 620 ~L~~L~L~~~~~~~~~p~-l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~ 698 (1103)
+|+.|+|++|.+.. +|. + .++|++|+|++|. +..+| ..+++|+.|++++|. +..+|
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N~-l~~ip--------------- 116 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNA-LISLP---ELPASLEYLDACDNR-LSTLP--------------- 116 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSC-CSCCC---CCCTTCCEEECCSSC-CSCCC---------------
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCC-Ccccc---cccCCCCEEEccCCC-CCCcc---------------
Confidence 77788888777544 443 3 3667777777754 33555 345666666666642 33343
Q ss_pred CcCCCcCCCcCCCccEEecCCccceecCccccCCCCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccccCCc
Q 044579 699 CVNLTEFPKISGKITELNLCDTAIEEVPSSVECLTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELPS 778 (1103)
Q Consensus 699 c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~ 778 (1103)
....+|+.|+|++|.++.+|. .+++|+.|+|++|.+.+ +|. .+++|++|+|++|. +..+|.
T Consensus 117 --------~l~~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~----L~~lp~ 177 (571)
T 3cvr_A 117 --------ELPASLKHLDVDNNQLTMLPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQ----LTFLPE 177 (571)
T ss_dssp --------CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSC----CSCCCC
T ss_pred --------hhhcCCCEEECCCCcCCCCCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCC----CCCcch
Confidence 322267777777787777777 57888888888887665 565 57788888888864 333666
Q ss_pred cccCCCCCCeeeccCCCCCCCCCCCcccCCCCCC-------CEEeCCCCCccccCccccCCCCCCEEeccCCcCCcccCc
Q 044579 779 SFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSL-------QWLDLSGNNFESLPSSIKQLSQLRKLDLSNCNMLLSLPE 851 (1103)
Q Consensus 779 ~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L-------~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~l~~lp~ 851 (1103)
+. ++|+.|+|++|.+. .+|. +.. +| +.|+|++|.|+.+|..+..+++|+.|+|++|++.+.+|.
T Consensus 178 -l~--~~L~~L~Ls~N~L~-~lp~---~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 178 -LP--ESLEALDVSTNLLE-SLPA---VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp -CC--TTCCEEECCSSCCS-SCCC---CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred -hh--CCCCEEECcCCCCC-chhh---HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 54 88889999888755 6653 322 66 999999999999999998899999999999999988887
Q ss_pred cccccc
Q 044579 852 LPLFLE 857 (1103)
Q Consensus 852 ~~~~L~ 857 (1103)
.+..+.
T Consensus 249 ~l~~l~ 254 (571)
T 3cvr_A 249 SLSQQT 254 (571)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 655443
No 106
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.62 E-value=4.4e-17 Score=186.31 Aligned_cols=254 Identities=16% Similarity=0.143 Sum_probs=132.6
Q ss_pred EEEcCCCCCCCCCcc--ccccccccccccccccccc-----cccccCC-cceEecCCCCCCCccCCC-CCCC-----CCc
Q 044579 579 LHWHGYPLKTLPFDF--ELENLIELRLPYSKVEQIW-----EGKKEAS-KLKSIDLCHSQHLIRMPD-LSEI-----PNL 644 (1103)
Q Consensus 579 L~l~~~~l~~lp~~~--~l~~L~~L~L~~n~i~~l~-----~~~~~l~-~L~~L~L~~~~~~~~~p~-l~~l-----~~L 644 (1103)
++++.|.+......+ .+++|++|+|++|.++..+ ..+..++ +|++|+|++|.+....+. +..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 455666665443333 3344777777777766554 4455666 677777777664433221 3332 666
Q ss_pred cEEEecCCCCCCccccc----ccCC-CcccEEEccCCCCCcccCCCCCCCCCcEEEccCCcCCCc-CCCcCCCccEEecC
Q 044579 645 ERTNFFNCTNLVLVPSS----IQNF-NNLSMLCFRGCESLRSFPRDIHFVSPVTIDFSFCVNLTE-FPKISGKITELNLC 718 (1103)
Q Consensus 645 ~~L~L~~~~~l~~~~~~----i~~l-~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~-~~~~~~~L~~L~L~ 718 (1103)
++|+|++|......+.. +..+ ++|+.|++++|. ++..+... +.. +.....+|++|+|+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~---------------l~~~l~~~~~~L~~L~Ls 146 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSE---------------FKQAFSNLPASITSLNLR 146 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHH---------------HHHHHTTSCTTCCEEECT
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHH---------------HHHHHHhCCCceeEEEcc
Confidence 66666666533333332 2223 556666666543 22211100 000 00001345566666
Q ss_pred Cccce-----ecCccccCCC-CCCEEecCCCccccccccccc----CC-CCCcEEeecCCCCCCc-cccCCccccCC-CC
Q 044579 719 DTAIE-----EVPSSVECLT-NLKELYLSRCSTLNRLSTSIC----KL-KSLHELILSDCLSLET-ITELPSSFANL-EG 785 (1103)
Q Consensus 719 ~~~i~-----~lp~~~~~l~-~L~~L~L~~~~~~~~lp~~l~----~l-~~L~~L~L~~~~~l~~-i~~lp~~~~~l-~~ 785 (1103)
+|.+. .++..+..++ +|++|+|++|.+.+..+..+. .+ ++|++|+|++|..... ...++..+..+ ++
T Consensus 147 ~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~ 226 (362)
T 3goz_A 147 GNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNH 226 (362)
T ss_dssp TSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTT
T ss_pred CCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCC
Confidence 66555 4444555554 777777777776655543333 33 4777777777642211 01134444443 47
Q ss_pred CCeeeccCCCCCCCCCC--CcccCCCCCCCEEeCCCCCcc--------ccCccccCCCCCCEEeccCCcCCcc
Q 044579 786 LEKLVLVGCSKLNKLPH--SIDFCCLSSLQWLDLSGNNFE--------SLPSSIKQLSQLRKLDLSNCNMLLS 848 (1103)
Q Consensus 786 L~~L~L~~~~~~~~lp~--~~~~~~l~~L~~L~Ls~n~l~--------~lp~~i~~l~~L~~L~L~~n~~l~~ 848 (1103)
|++|+|++|.+...-+. ...+..+++|+.|+|++|.+. .++..+..+++|+.|+|++|++...
T Consensus 227 L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 227 VVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred ceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 77777777765432210 122345667777777777632 3344556667777777777765544
No 107
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.62 E-value=3.5e-18 Score=209.74 Aligned_cols=129 Identities=16% Similarity=0.123 Sum_probs=74.2
Q ss_pred hhcCcccceEEEecCCCCCccccCcceecCCCcc-cCCCceEEEEEcCC-CCCC--CCCcc-ccccccccccccccccc-
Q 044579 537 FANMSNLRLLKFYMPERGGVPIMSSKVHLDQGLE-DLPEKLRYLHWHGY-PLKT--LPFDF-ELENLIELRLPYSKVEQ- 610 (1103)
Q Consensus 537 f~~l~~Lr~L~l~~n~~~~~~~~~~~~~l~~~l~-~l~~~Lr~L~l~~~-~l~~--lp~~~-~l~~L~~L~L~~n~i~~- 610 (1103)
+..+++|+.|+++++.+.+. .+..+. .++ +|++|++.+| .+.. ++... .+++|++|+|++|.++.
T Consensus 101 ~~~~~~L~~L~L~~~~~~~~--------~~~~l~~~~~-~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~ 171 (594)
T 2p1m_B 101 SSSYTWLEEIRLKRMVVTDD--------CLELIAKSFK-NFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDV 171 (594)
T ss_dssp HHHCTTCCEEEEESCBCCHH--------HHHHHHHHCT-TCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECC
T ss_pred HHhCCCCCeEEeeCcEEcHH--------HHHHHHHhCC-CCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCc
Confidence 45667777777776644211 001111 223 6777777776 3332 33333 56777777777776543
Q ss_pred ----cccccccCCcceEecCCCCCCCccCC-----C-CCCCCCccEEEecCCCCCCcccccccCCCcccEEEccCC
Q 044579 611 ----IWEGKKEASKLKSIDLCHSQHLIRMP-----D-LSEIPNLERTNFFNCTNLVLVPSSIQNFNNLSMLCFRGC 676 (1103)
Q Consensus 611 ----l~~~~~~l~~L~~L~L~~~~~~~~~p-----~-l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~~ 676 (1103)
++.....+++|+.|+|++|. ..+. . +..+++|++|++++|..+..++..+..+++|+.|+++.|
T Consensus 172 ~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 172 SGHWLSHFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp CGGGGGGSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred chHHHHHHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence 23333456677777777765 1111 1 234577777777777655556666667777777765544
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.60 E-value=1.9e-15 Score=182.99 Aligned_cols=79 Identities=15% Similarity=0.186 Sum_probs=57.0
Q ss_pred ccccccccccccccccccccccccCCcceEecCCCCCCCccCCCCCCCCCccEEEecCCCCCCcccccccCCCcccEEEc
Q 044579 594 ELENLIELRLPYSKVEQIWEGKKEASKLKSIDLCHSQHLIRMPDLSEIPNLERTNFFNCTNLVLVPSSIQNFNNLSMLCF 673 (1103)
Q Consensus 594 ~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L 673 (1103)
.+.++..+.+..+.+..+.. ...+++|+.|+|++|. +..++.+..+++|+.|+|++|... .++. +..+++|+.|+|
T Consensus 19 ~l~~l~~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~Ls~N~l~-~~~~-l~~l~~L~~L~L 94 (605)
T 1m9s_A 19 AFAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSD-IKSVQGIQYLPNVTKLFLNGNKLT-DIKP-LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHHHHTTCSCTTSEEC-HHHHTTCCCCBCTTCC-CCCCTTGGGCTTCCEEECTTSCCC-CCGG-GGGCTTCCEEEC
T ss_pred HHHHHHHHhccCCCcccccc-hhcCCCCCEEECcCCC-CCCChHHccCCCCCEEEeeCCCCC-CChh-hccCCCCCEEEC
Confidence 56677778888877776543 4678888888888887 445667888888888888886543 3443 777777777777
Q ss_pred cCC
Q 044579 674 RGC 676 (1103)
Q Consensus 674 ~~~ 676 (1103)
++|
T Consensus 95 s~N 97 (605)
T 1m9s_A 95 DEN 97 (605)
T ss_dssp CSS
T ss_pred cCC
Confidence 775
No 109
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.60 E-value=1.6e-14 Score=155.92 Aligned_cols=158 Identities=25% Similarity=0.212 Sum_probs=108.2
Q ss_pred CCccEEecCCccceecCc-cccCCCCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCe
Q 044579 710 GKITELNLCDTAIEEVPS-SVECLTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELPSSFANLEGLEK 788 (1103)
Q Consensus 710 ~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~ 788 (1103)
.+++.|+|++|.+..++. .+..+++|++|+|++|.+.+..|..+..+++|++|+|++|..... .+..+..+++|++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~ 111 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL---PLGVFDHLTQLDK 111 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC---CTTTTTTCTTCCE
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccccc---ChhHhcccCCCCE
Confidence 456677777777776554 567777888888887777776666677777888888877643322 2345677778888
Q ss_pred eeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCccccCc-cccCCCCCCEEeccCCcCCcccCccccccccceecccccc
Q 044579 789 LVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESLPS-SIKQLSQLRKLDLSNCNMLLSLPELPLFLEDLEARNCKRL 867 (1103)
Q Consensus 789 L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~~~~c~~l 867 (1103)
|+|++|.+. .+| +..+..+++|+.|+|++|.++.+|. .+..+++|+.|+|++|++.+..+..+..+..|..+++.+|
T Consensus 112 L~L~~N~l~-~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 112 LYLGGNQLK-SLP-SGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp EECCSSCCC-CCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred EEcCCCcCC-CcC-hhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 888777654 333 3335667788888888887777765 4677778888888887776655556666666666666666
Q ss_pred cccCC
Q 044579 868 QFLPE 872 (1103)
Q Consensus 868 ~~~~~ 872 (1103)
.+...
T Consensus 190 ~~~c~ 194 (251)
T 3m19_A 190 QFDCS 194 (251)
T ss_dssp CBCTT
T ss_pred ceeCC
Confidence 65543
No 110
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.59 E-value=1.9e-14 Score=155.19 Aligned_cols=66 Identities=29% Similarity=0.357 Sum_probs=33.0
Q ss_pred cCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCccccCc-cccCCCCCCEEeccCCcCCcc
Q 044579 781 ANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESLPS-SIKQLSQLRKLDLSNCNMLLS 848 (1103)
Q Consensus 781 ~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~n~~l~~ 848 (1103)
..+++|+.|+|++|.+. .+| +..+..+++|+.|+|++|.++.+|. .+..+++|+.|+|++|++...
T Consensus 128 ~~l~~L~~L~Ls~N~l~-~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 128 DRLTKLKELRLNTNQLQ-SIP-AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTCTTCCEEECCSSCCC-CCC-TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred ccCCcccEEECcCCcCC-ccC-HHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 33444444444444322 221 1224445556666666666555543 455566666666666665443
No 111
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.59 E-value=5.6e-15 Score=163.01 Aligned_cols=193 Identities=21% Similarity=0.257 Sum_probs=129.0
Q ss_pred ccccccccccccccccccccccccCCcceEecCCCCCCCccCCCCCCCCCccEEEecCCCCCCcccccccCCCcccEEEc
Q 044579 594 ELENLIELRLPYSKVEQIWEGKKEASKLKSIDLCHSQHLIRMPDLSEIPNLERTNFFNCTNLVLVPSSIQNFNNLSMLCF 673 (1103)
Q Consensus 594 ~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L 673 (1103)
.+.++..+.+..+.+..+. ....+++|+.|++++|.+ ..++.+..+++|++|++++|.. ..++. +..+++|+.|++
T Consensus 22 ~l~~~~~~~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i-~~~~~~~~l~~L~~L~L~~n~l-~~~~~-l~~l~~L~~L~l 97 (291)
T 1h6t_A 22 AFAETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDI-KSVQGIQYLPNVTKLFLNGNKL-TDIKP-LANLKNLGWLFL 97 (291)
T ss_dssp HHHHHHHHHTTCSCTTSEE-CHHHHHTCCEEECTTSCC-CCCTTGGGCTTCCEEECCSSCC-CCCGG-GTTCTTCCEEEC
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcccEEEccCCCc-ccChhHhcCCCCCEEEccCCcc-CCCcc-cccCCCCCEEEC
Confidence 4555666666666665442 234567777777777753 3445666677777777776543 33333 556666666665
Q ss_pred cCCCCCcccCCCCCCCCCcEEEccCCcCCCcCCCcCCCccEEecCCccceecCccccCCCCCCEEecCCCcccccccccc
Q 044579 674 RGCESLRSFPRDIHFVSPVTIDFSFCVNLTEFPKISGKITELNLCDTAIEEVPSSVECLTNLKELYLSRCSTLNRLSTSI 753 (1103)
Q Consensus 674 ~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l 753 (1103)
++| .+..+|. +..+++|+.|+|++|.+.+. ..+
T Consensus 98 ~~n--------------------------------------------~l~~~~~-l~~l~~L~~L~L~~n~i~~~--~~l 130 (291)
T 1h6t_A 98 DEN--------------------------------------------KVKDLSS-LKDLKKLKSLSLEHNGISDI--NGL 130 (291)
T ss_dssp CSS--------------------------------------------CCCCGGG-GTTCTTCCEEECTTSCCCCC--GGG
T ss_pred CCC--------------------------------------------cCCCChh-hccCCCCCEEECCCCcCCCC--hhh
Confidence 554 2333332 56667777777777765542 346
Q ss_pred cCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCccccCccccCCC
Q 044579 754 CKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESLPSSIKQLS 833 (1103)
Q Consensus 754 ~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~lp~~i~~l~ 833 (1103)
..+++|+.|++++|.. ..+ ..+..+++|+.|+|++|.+.. ++ + +..+++|+.|+|++|.++.+|. +..++
T Consensus 131 ~~l~~L~~L~l~~n~l----~~~-~~l~~l~~L~~L~L~~N~l~~-~~-~--l~~l~~L~~L~L~~N~i~~l~~-l~~l~ 200 (291)
T 1h6t_A 131 VHLPQLESLYLGNNKI----TDI-TVLSRLTKLDTLSLEDNQISD-IV-P--LAGLTKLQNLYLSKNHISDLRA-LAGLK 200 (291)
T ss_dssp GGCTTCCEEECCSSCC----CCC-GGGGGCTTCSEEECCSSCCCC-CG-G--GTTCTTCCEEECCSSCCCBCGG-GTTCT
T ss_pred cCCCCCCEEEccCCcC----Ccc-hhhccCCCCCEEEccCCcccc-ch-h--hcCCCccCEEECCCCcCCCChh-hccCC
Confidence 7777777777777642 223 457778888888888887554 32 2 6778999999999999999874 88999
Q ss_pred CCCEEeccCCcCCc
Q 044579 834 QLRKLDLSNCNMLL 847 (1103)
Q Consensus 834 ~L~~L~L~~n~~l~ 847 (1103)
+|+.|+|++|++..
T Consensus 201 ~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 201 NLDVLELFSQECLN 214 (291)
T ss_dssp TCSEEEEEEEEEEC
T ss_pred CCCEEECcCCcccC
Confidence 99999999998655
No 112
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.58 E-value=5.3e-14 Score=160.03 Aligned_cols=286 Identities=14% Similarity=0.132 Sum_probs=167.8
Q ss_pred CCCCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhh---cccChH
Q 044579 176 SESTDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKA---NKMGVI 252 (1103)
Q Consensus 176 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~---~~~~~~ 252 (1103)
.++..+..||||++++++|.+++..+ +++.|+|++|+|||||+++++++. . .+|+. ..... ......
T Consensus 6 ~~~~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~----~-~~~~~-~~~~~~~~~~~~~~ 75 (350)
T 2qen_A 6 RPKTRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNER----P-GILID-CRELYAERGHITRE 75 (350)
T ss_dssp SCCCSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHS----S-EEEEE-HHHHHHTTTCBCHH
T ss_pred CCCCChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHc----C-cEEEE-eecccccccCCCHH
Confidence 34556678999999999999988642 689999999999999999999875 1 55554 32221 011233
Q ss_pred HHHHHHHHhhhCC--------------CCccc-cccchH----HHHHhhcC-CceEEEEeCCCCC--------HhHHHHH
Q 044579 253 HVRDEVISQVLGE--------------NLKIG-TLIVPQ----NIKKRLQR-VKVLIVLDDVNDE--------FTQLESL 304 (1103)
Q Consensus 253 ~~~~~ll~~l~~~--------------~~~~~-~~~~~~----~l~~~L~~-k~~LlVLDdv~~~--------~~~l~~l 304 (1103)
.+...+...+... ..... ...... .+.+.... ++++||+||++.- ...+..+
T Consensus 76 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L 155 (350)
T 2qen_A 76 ELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALF 155 (350)
T ss_dssp HHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHH
Confidence 3333333322110 00000 001111 23333322 4899999999621 1122322
Q ss_pred hCCCCccCCCcEEEEEeCchhhHhh-----------c-CcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHH
Q 044579 305 AGGVDRFSPGSRIVITTRDKQVLDK-----------C-GVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIV 372 (1103)
Q Consensus 305 ~~~~~~~~~gs~IIiTTR~~~v~~~-----------~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~ 372 (1103)
...... .++.++|+|++...+... . .....+++.+|+.+|+.+++....-...... ..+.+.+++
T Consensus 156 ~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~--~~~~~~~i~ 232 (350)
T 2qen_A 156 AYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV--PENEIEEAV 232 (350)
T ss_dssp HHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCC--CHHHHHHHH
T ss_pred HHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHH
Confidence 221111 257889999987643221 1 1235789999999999999987542211111 135678999
Q ss_pred HHhCCChhHHHHHHhhcCC-CCHHHHHHHHHHhhhcCCcchhhHHHhhhcCC---CHHHHHHHhhhhccCCCCCHHHHHH
Q 044579 373 GYAKGNPLALEVLGSSLYQ-KSKQQWKVKLQNLKLISEPNIYNVLKISYDDL---NPEEKKIFLDIACFFKGEDADFVTR 448 (1103)
Q Consensus 373 ~~~~G~PLal~~lg~~L~~-~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L---~~~~k~~fl~~a~f~~~~~~~~~~~ 448 (1103)
+.++|+|+++..++..+.. .+...+.. .+.. .+...+...+..+ ++..+.++..+|+ .......+..
T Consensus 233 ~~tgG~P~~l~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~l~~l~~~~~~~~~~l~~la~--g~~~~~~l~~ 303 (350)
T 2qen_A 233 ELLDGIPGWLVVFGVEYLRNGDFGRAMK---RTLE----VAKGLIMGELEELRRRSPRYVDILRAIAL--GYNRWSLIRD 303 (350)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCHHHHHH---HHHH----HHHHHHHHHHHHHHHHCHHHHHHHHHHHT--TCCSHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHhccccHhHHHH---HHHH----HHHHHHHHHHHHHHhCChhHHHHHHHHHh--CCCCHHHHHH
Confidence 9999999999999875422 22222211 1110 0111111122222 7888999999998 3344444444
Q ss_pred Hh-----cC-----CCchHHHhhccCeeEcCCCeEEe-chhHHHHHH
Q 044579 449 IQ-----DD-----PTSLDNIVDKSLITISDENRLQM-HDLLQEMGQ 484 (1103)
Q Consensus 449 ~~-----~~-----~~~l~~L~~~sLi~~~~~~~~~m-Hdlv~~~~~ 484 (1103)
.+ .. ..+++.|.+.+||... ++.|.+ |++++++.+
T Consensus 304 ~~~~~~~~~~~~~~~~~l~~L~~~gli~~~-~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 304 YLAVKGTKIPEPRLYALLENLKKMNWIVEE-DNTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHTTSEEEE-TTEEEESSHHHHHHHT
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhCCCEEec-CCEEEEecHHHHHHHc
Confidence 33 21 4678999999999886 466655 777777653
No 113
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.57 E-value=5.6e-14 Score=160.29 Aligned_cols=284 Identities=17% Similarity=0.173 Sum_probs=165.0
Q ss_pred CCCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhh--cccChHHH
Q 044579 177 ESTDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKA--NKMGVIHV 254 (1103)
Q Consensus 177 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~--~~~~~~~~ 254 (1103)
++..+..||||+++++.|.+ +.. +++.|+|++|+|||||+++++++.... .+|+. ..... ........
T Consensus 8 ~~~~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~ 77 (357)
T 2fna_A 8 PKDNRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNLP---YIYLD-LRKFEERNYISYKDF 77 (357)
T ss_dssp CCCSGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEEE-GGGGTTCSCCCHHHH
T ss_pred CCCCHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEEE-chhhccccCCCHHHH
Confidence 44566789999999999999 753 599999999999999999999886532 45554 32210 00111222
Q ss_pred HHHHHHhh-------------hCCCC---------ccc----cccchHHHHHhhcC---CceEEEEeCCCCC-----HhH
Q 044579 255 RDEVISQV-------------LGENL---------KIG----TLIVPQNIKKRLQR---VKVLIVLDDVNDE-----FTQ 300 (1103)
Q Consensus 255 ~~~ll~~l-------------~~~~~---------~~~----~~~~~~~l~~~L~~---k~~LlVLDdv~~~-----~~~ 300 (1103)
...+...+ ..... ... .......+.+.+.. ++++|||||++.- .+.
T Consensus 78 ~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~ 157 (357)
T 2fna_A 78 LLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNL 157 (357)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCC
T ss_pred HHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhH
Confidence 22221111 11100 000 01111223333321 4999999999621 111
Q ss_pred HHHHhCCCCccCCCcEEEEEeCchhhHhh----------c-C-cceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHH
Q 044579 301 LESLAGGVDRFSPGSRIVITTRDKQVLDK----------C-G-VSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELS 368 (1103)
Q Consensus 301 l~~l~~~~~~~~~gs~IIiTTR~~~v~~~----------~-~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~ 368 (1103)
+..+..... ..++.++|+|+|....... . + ....+++.+|+.+|+.+++...+-.........
T Consensus 158 ~~~l~~~~~-~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~---- 232 (357)
T 2fna_A 158 LPALAYAYD-NLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY---- 232 (357)
T ss_dssp HHHHHHHHH-HCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCH----
T ss_pred HHHHHHHHH-cCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcH----
Confidence 122211111 1247899999997653221 1 1 136889999999999999987542212122221
Q ss_pred HHHHHHhCCChhHHHHHHhhcCC-CCHHHHHHH-HHHhhhcCCcchhhHHH-hhh--cCCCHHHHHHHhhhhccCCCCCH
Q 044579 369 KEIVGYAKGNPLALEVLGSSLYQ-KSKQQWKVK-LQNLKLISEPNIYNVLK-ISY--DDLNPEEKKIFLDIACFFKGEDA 443 (1103)
Q Consensus 369 ~~i~~~~~G~PLal~~lg~~L~~-~~~~~w~~~-l~~l~~~~~~~i~~~l~-~sy--~~L~~~~k~~fl~~a~f~~~~~~ 443 (1103)
.++++.++|+|+++..++..+.. .+...|... .+... ..+...+. ..+ ..|++..+.++..+|+ .. +.
T Consensus 233 ~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~l~~~~~~~l~~la~--g~-~~ 305 (357)
T 2fna_A 233 EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAK----KLILKEFENFLHGREIARKRYLNIMRTLSK--CG-KW 305 (357)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH----HHHHHHHHHHHTTCGGGHHHHHHHHHHHTT--CB-CH
T ss_pred HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHc--CC-CH
Confidence 78999999999999999876532 233333221 11110 01111121 111 1678899999999998 23 55
Q ss_pred HHHHH----Hhc---C----CCchHHHhhccCeeEcCCCeEE-echhHHHHH
Q 044579 444 DFVTR----IQD---D----PTSLDNIVDKSLITISDENRLQ-MHDLLQEMG 483 (1103)
Q Consensus 444 ~~~~~----~~~---~----~~~l~~L~~~sLi~~~~~~~~~-mHdlv~~~~ 483 (1103)
..+.. ..+ . ..+++.|.+.+||.... +.|. .|++++++.
T Consensus 306 ~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~-~~y~f~~~~~~~~l 356 (357)
T 2fna_A 306 SDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEG-EKYCPSEPLISLAF 356 (357)
T ss_dssp HHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESS-SCEEESSHHHHHHT
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecC-CEEEecCHHHHHhh
Confidence 55442 222 1 46789999999998873 5565 578888764
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.56 E-value=1.7e-17 Score=199.68 Aligned_cols=201 Identities=18% Similarity=0.178 Sum_probs=120.2
Q ss_pred ccccccccccccccccccccccccCCcceEecCCCCCCCccCCCCCCCCCccEEEecCCCCCCcccccccCCCcccEEE-
Q 044579 594 ELENLIELRLPYSKVEQIWEGKKEASKLKSIDLCHSQHLIRMPDLSEIPNLERTNFFNCTNLVLVPSSIQNFNNLSMLC- 672 (1103)
Q Consensus 594 ~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~- 672 (1103)
..++|+.|+|++|+++.+|..++++++|+.|++++|..+...|. .+..+......|..++.+++|+.|+
T Consensus 347 ~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~----------ll~~~~~~~~~~~~l~~l~~L~~L~~ 416 (567)
T 1dce_A 347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIIL----------LMRALDPLLYEKETLQYFSTLKAVDP 416 (567)
T ss_dssp TTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH----------HHHHHCTGGGHHHHHHHHHHHHHHCG
T ss_pred cCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHH----------HHHhcccccCCHHHHHHHHhcccCcc
Confidence 46789999999999999999999999999999977643222221 0112234455677788888888887
Q ss_pred ccCCCCCcccCCCCCCCCCcEEEccCCcCCCcCCCcCCCccEEecCCccceecCccccCCCCCCEEecCCCccccccccc
Q 044579 673 FRGCESLRSFPRDIHFVSPVTIDFSFCVNLTEFPKISGKITELNLCDTAIEEVPSSVECLTNLKELYLSRCSTLNRLSTS 752 (1103)
Q Consensus 673 L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~ 752 (1103)
++.+ .+. +|..+.+.+|.+..+|.. .|+.|+|++|.+.+ +|.
T Consensus 417 l~~n-~~~------------------------------~L~~l~l~~n~i~~l~~~-----~L~~L~Ls~n~l~~-lp~- 458 (567)
T 1dce_A 417 MRAA-YLD------------------------------DLRSKFLLENSVLKMEYA-----DVRVLHLAHKDLTV-LCH- 458 (567)
T ss_dssp GGHH-HHH------------------------------HHHHHHHHHHHHHHHHHT-----TCSEEECTTSCCSS-CCC-
T ss_pred hhhc-ccc------------------------------hhhhhhhhcccccccCcc-----CceEEEecCCCCCC-CcC-
Confidence 4432 111 233334444444444331 35555555554433 444
Q ss_pred ccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCcccc--Ccccc
Q 044579 753 ICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESL--PSSIK 830 (1103)
Q Consensus 753 l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~l--p~~i~ 830 (1103)
++.+++|+.|+|++|. +..+|..++++++|+.|+|++|.+.+ +| .++.+++|+.|+|++|.|+.+ |..+.
T Consensus 459 ~~~l~~L~~L~Ls~N~----l~~lp~~~~~l~~L~~L~Ls~N~l~~-lp---~l~~l~~L~~L~Ls~N~l~~~~~p~~l~ 530 (567)
T 1dce_A 459 LEQLLLVTHLDLSHNR----LRALPPALAALRCLEVLQASDNALEN-VD---GVANLPRLQELLLCNNRLQQSAAIQPLV 530 (567)
T ss_dssp GGGGTTCCEEECCSSC----CCCCCGGGGGCTTCCEEECCSSCCCC-CG---GGTTCSSCCEEECCSSCCCSSSTTGGGG
T ss_pred ccccccCcEeecCccc----ccccchhhhcCCCCCEEECCCCCCCC-Cc---ccCCCCCCcEEECCCCCCCCCCCcHHHh
Confidence 5555566666665543 22355566666666666666665443 42 355566666666666666655 56666
Q ss_pred CCCCCCEEeccCCcCCcccC
Q 044579 831 QLSQLRKLDLSNCNMLLSLP 850 (1103)
Q Consensus 831 ~l~~L~~L~L~~n~~l~~lp 850 (1103)
.+++|+.|+|++|++.+..|
T Consensus 531 ~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 531 SCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp GCTTCCEEECTTSGGGGSSS
T ss_pred cCCCCCEEEecCCcCCCCcc
Confidence 66666666666666554433
No 115
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.55 E-value=2.1e-16 Score=180.63 Aligned_cols=237 Identities=14% Similarity=0.092 Sum_probs=153.6
Q ss_pred CcccCCCceEEEEEcCCCCCCCCC-----cc-ccc-ccccccccccccccc-ccccccC-----CcceEecCCCCCCCcc
Q 044579 568 GLEDLPEKLRYLHWHGYPLKTLPF-----DF-ELE-NLIELRLPYSKVEQI-WEGKKEA-----SKLKSIDLCHSQHLIR 634 (1103)
Q Consensus 568 ~l~~l~~~Lr~L~l~~~~l~~lp~-----~~-~l~-~L~~L~L~~n~i~~l-~~~~~~l-----~~L~~L~L~~~~~~~~ 634 (1103)
.+...+.+|++|++++|.+...+. .+ .++ +|++|+|++|.+... +..+..+ ++|++|+|++|.+...
T Consensus 16 ~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 95 (362)
T 3goz_A 16 EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYK 95 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred HHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChH
Confidence 345566689999999999998884 23 566 899999999999865 3445444 9999999999996655
Q ss_pred CCC-----CCCC-CCccEEEecCCCCCCccccc----ccC-CCcccEEEccCCCCCc----ccCCCC-CCCCCcEEEccC
Q 044579 635 MPD-----LSEI-PNLERTNFFNCTNLVLVPSS----IQN-FNNLSMLCFRGCESLR----SFPRDI-HFVSPVTIDFSF 698 (1103)
Q Consensus 635 ~p~-----l~~l-~~L~~L~L~~~~~l~~~~~~----i~~-l~~L~~L~L~~~~~l~----~lp~~~-~l~~L~~L~l~~ 698 (1103)
.+. +..+ ++|++|++++|......+.. +.. .++|++|+|++|..-. .++..+ ..+
T Consensus 96 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~--------- 166 (362)
T 3goz_A 96 SSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIP--------- 166 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSC---------
T ss_pred HHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCC---------
Confidence 543 4455 89999999998754443333 334 3689999999874332 111111 111
Q ss_pred CcCCCcCCCcCCCccEEecCCccceecCc-----cccCC-CCCCEEecCCCcccc----cccccccCC-CCCcEEeecCC
Q 044579 699 CVNLTEFPKISGKITELNLCDTAIEEVPS-----SVECL-TNLKELYLSRCSTLN----RLSTSICKL-KSLHELILSDC 767 (1103)
Q Consensus 699 c~~l~~~~~~~~~L~~L~L~~~~i~~lp~-----~~~~l-~~L~~L~L~~~~~~~----~lp~~l~~l-~~L~~L~L~~~ 767 (1103)
.+|++|+|++|.+...+. .+..+ ++|+.|+|++|.+.. .++..+..+ ++|++|+|++|
T Consensus 167 -----------~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N 235 (362)
T 3goz_A 167 -----------ANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN 235 (362)
T ss_dssp -----------TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS
T ss_pred -----------ccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCC
Confidence 255566666666653322 34445 478888888887654 245555553 47888888887
Q ss_pred CCCCcc-ccCCccccCCCCCCeeeccCCCCCCCCCC-----CcccCCCCCCCEEeCCCCCccc
Q 044579 768 LSLETI-TELPSSFANLEGLEKLVLVGCSKLNKLPH-----SIDFCCLSSLQWLDLSGNNFES 824 (1103)
Q Consensus 768 ~~l~~i-~~lp~~~~~l~~L~~L~L~~~~~~~~lp~-----~~~~~~l~~L~~L~Ls~n~l~~ 824 (1103)
...... ..+...+..+++|+.|+|++|.+....+. ...+..+++|+.|++++|.+..
T Consensus 236 ~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 236 CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 533210 11223456678888888888762211100 1234567888999999998773
No 116
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.54 E-value=2.7e-14 Score=172.84 Aligned_cols=182 Identities=17% Similarity=0.218 Sum_probs=99.8
Q ss_pred EcCCCCCCCCCccccccccccccccccccccccccccCCcceEecCCCCCCCccCCCCCCCCCccEEEecCCCCCCcccc
Q 044579 581 WHGYPLKTLPFDFELENLIELRLPYSKVEQIWEGKKEASKLKSIDLCHSQHLIRMPDLSEIPNLERTNFFNCTNLVLVPS 660 (1103)
Q Consensus 581 l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~~~~l~~~~~ 660 (1103)
+..+.+..++....+++|+.|+|++|.+..++ .+..+++|+.|+|++|.+.. ++.+..+++|+.|+|++|. +..+|
T Consensus 28 l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~-~~~l~~l~~L~~L~Ls~N~-l~~l~- 103 (605)
T 1m9s_A 28 LKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTD-IKPLTNLKNLGWLFLDENK-IKDLS- 103 (605)
T ss_dssp TTCSCTTSEECHHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCC-CGGGGGCTTCCEEECCSSC-CCCCT-
T ss_pred ccCCCcccccchhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCC-ChhhccCCCCCEEECcCCC-CCCCh-
Confidence 33444444444346677777777777777765 46777777777777776544 3347777777788777764 33333
Q ss_pred cccCCCcccEEEccCCCCCcccCCCCCCCCCcEEEccCCcCCCcCCCcCCCccEEecCCccceecCccccCCCCCCEEec
Q 044579 661 SIQNFNNLSMLCFRGCESLRSFPRDIHFVSPVTIDFSFCVNLTEFPKISGKITELNLCDTAIEEVPSSVECLTNLKELYL 740 (1103)
Q Consensus 661 ~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L 740 (1103)
.+..+++|+.|+|++|. +..++....+ .+|+.|+|++|.+..+ ..+..+++|+.|+|
T Consensus 104 ~l~~l~~L~~L~Ls~N~-l~~l~~l~~l---------------------~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~L 160 (605)
T 1m9s_A 104 SLKDLKKLKSLSLEHNG-ISDINGLVHL---------------------PQLESLYLGNNKITDI-TVLSRLTKLDTLSL 160 (605)
T ss_dssp TSTTCTTCCEEECTTSC-CCCCGGGGGC---------------------TTCSEEECCSSCCCCC-GGGGSCTTCSEEEC
T ss_pred hhccCCCCCEEEecCCC-CCCCccccCC---------------------CccCEEECCCCccCCc-hhhcccCCCCEEEC
Confidence 56667777777776653 2222110111 2333333344444443 33555666666666
Q ss_pred CCCcccccccccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCC
Q 044579 741 SRCSTLNRLSTSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSK 796 (1103)
Q Consensus 741 ~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~ 796 (1103)
++|.+.+..| +..+++|+.|+|++|.. ..+ +.+..+++|+.|+|++|++
T Consensus 161 s~N~l~~~~~--l~~l~~L~~L~Ls~N~i----~~l-~~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 161 EDNQISDIVP--LAGLTKLQNLYLSKNHI----SDL-RALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp CSSCCCCCGG--GTTCTTCCEEECCSSCC----CBC-GGGTTCTTCSEEECCSEEE
T ss_pred cCCcCCCchh--hccCCCCCEEECcCCCC----CCC-hHHccCCCCCEEEccCCcC
Confidence 6665544433 55556666666655432 112 2344555555555555543
No 117
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.53 E-value=6.9e-14 Score=146.19 Aligned_cols=160 Identities=24% Similarity=0.253 Sum_probs=123.4
Q ss_pred CCCccEEecCCccceecCcc-ccCCCCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccccCCc-cccCCCCC
Q 044579 709 SGKITELNLCDTAIEEVPSS-VECLTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELPS-SFANLEGL 786 (1103)
Q Consensus 709 ~~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~-~~~~l~~L 786 (1103)
..+|++|++++|.++.+|.. +..+++|++|+|++|.+.+..+..+..+++|++|+|++|... .+|. .+..+++|
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L 102 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ----SLPNGVFDKLTQL 102 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC----CCCTTTTTTCTTC
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC----ccCHhHhcCccCC
Confidence 45688888888888887764 688999999999999877666666788999999999987533 3444 46889999
Q ss_pred CeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCccccCcc-ccCCCCCCEEeccCCcCCcccCccccccccceecccc
Q 044579 787 EKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESLPSS-IKQLSQLRKLDLSNCNMLLSLPELPLFLEDLEARNCK 865 (1103)
Q Consensus 787 ~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~lp~~-i~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~~~~c~ 865 (1103)
++|+|++|.+.. ++ +..+..+++|+.|+|++|.++.+|.. +..+++|+.|+|++|++.+..| .|..++..
T Consensus 103 ~~L~L~~N~l~~-~~-~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~-------~l~~L~~~ 173 (208)
T 2o6s_A 103 KELALNTNQLQS-LP-DGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP-------GIRYLSEW 173 (208)
T ss_dssp CEEECCSSCCCC-CC-TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT-------TTHHHHHH
T ss_pred CEEEcCCCcCcc-cC-HhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCC-------CHHHHHHH
Confidence 999999988654 43 33467789999999999999988765 6889999999999998765543 34444556
Q ss_pred cccccCCCCchhhhhh
Q 044579 866 RLQFLPEIPSCLEELD 881 (1103)
Q Consensus 866 ~l~~~~~~p~~l~~L~ 881 (1103)
.+++.|.+|..++.+.
T Consensus 174 ~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 174 INKHSGVVRNSAGSVA 189 (208)
T ss_dssp HHHCTTTBBCTTSSBC
T ss_pred HHhCCceeeccCcccc
Confidence 6778888887766653
No 118
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.52 E-value=2.3e-13 Score=158.60 Aligned_cols=280 Identities=13% Similarity=0.063 Sum_probs=163.4
Q ss_pred CCCCCccccchhHHHHHHhh-cc--cC--CCeEEEEE--eecCCChhHHHHHHHHHHHhcc-----CCc-eEEEEechhh
Q 044579 179 TDLDGLVGLNTRIEEMKSLL-CL--ES--HDVRIVGI--WGMGGIGKTTIASVVFHQISRH-----FQG-KCFMANVREK 245 (1103)
Q Consensus 179 ~~~~~~vGr~~~~~~l~~~L-~~--~~--~~~~vv~I--~G~gGiGKTtLA~~v~~~~~~~-----F~~-~~~~~~~~~~ 245 (1103)
..+..|+||+.+++++.+.+ .. .. ...+.+.| +|++|+||||||+++++..... +.. .+|+. .
T Consensus 19 ~~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~-~--- 94 (412)
T 1w5s_A 19 YIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN-A--- 94 (412)
T ss_dssp CCCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE-G---
T ss_pred cCCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE-C---
Confidence 34578999999999999888 42 11 23456666 9999999999999999877553 232 34444 2
Q ss_pred hcccChHHHHHHHHHhhhCCCCcccc--ccchHHHHHhhc--CCceEEEEeCCCC-------CHhHHHHHhCCCCcc---
Q 044579 246 ANKMGVIHVRDEVISQVLGENLKIGT--LIVPQNIKKRLQ--RVKVLIVLDDVND-------EFTQLESLAGGVDRF--- 311 (1103)
Q Consensus 246 ~~~~~~~~~~~~ll~~l~~~~~~~~~--~~~~~~l~~~L~--~k~~LlVLDdv~~-------~~~~l~~l~~~~~~~--- 311 (1103)
........+..+++.++......... ......+.+.+. +++++|||||++. ..+.+..+...+...
T Consensus 95 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~ 174 (412)
T 1w5s_A 95 FNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSR 174 (412)
T ss_dssp GGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCT
T ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccC
Confidence 23345667777777776432111110 111124555553 6799999999972 123343333222111
Q ss_pred C--CCcEEEEEeCchhhHhhc---------CcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhC----
Q 044579 312 S--PGSRIVITTRDKQVLDKC---------GVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAK---- 376 (1103)
Q Consensus 312 ~--~gs~IIiTTR~~~v~~~~---------~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~---- 376 (1103)
+ ....+|+|||...+.... .....+++++|+.+++.++|...+........-..+....+++.++
T Consensus 175 ~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 254 (412)
T 1w5s_A 175 DGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKG 254 (412)
T ss_dssp TSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGT
T ss_pred CCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhcc
Confidence 2 344588888765532111 1123499999999999999976642111111112356788999999
Q ss_pred --CChhHHHHHHhhc------CC---CCHHHHHHHHHHhhhcCCcchhhHHHhhhcCCCHHHHHHHhhhhccCC----CC
Q 044579 377 --GNPLALEVLGSSL------YQ---KSKQQWKVKLQNLKLISEPNIYNVLKISYDDLNPEEKKIFLDIACFFK----GE 441 (1103)
Q Consensus 377 --G~PLal~~lg~~L------~~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~----~~ 441 (1103)
|+|..+..++... .+ .+.+.+..++..... ...+..+++.|++..+.++..+|.+.. ..
T Consensus 255 ~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~ 328 (412)
T 1w5s_A 255 GDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------ASIQTHELEALSIHELIILRLIAEATLGGMEWI 328 (412)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSB
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCc
Confidence 9997655544321 11 133444433332210 234555678999999999999997641 12
Q ss_pred CHHH-------HH-HHhcC--------CCchHHHhhccCeeEc
Q 044579 442 DADF-------VT-RIQDD--------PTSLDNIVDKSLITIS 468 (1103)
Q Consensus 442 ~~~~-------~~-~~~~~--------~~~l~~L~~~sLi~~~ 468 (1103)
.... +. ...+. ..+++.|.+.+||...
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 329 NAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp CHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEee
Confidence 2211 11 22111 3568899999999775
No 119
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.50 E-value=6.1e-14 Score=154.70 Aligned_cols=84 Identities=26% Similarity=0.345 Sum_probs=40.8
Q ss_pred CCCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcccCCCCC
Q 044579 732 LTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSS 811 (1103)
Q Consensus 732 l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~ 811 (1103)
+++|+.|++++|.+.+. ..+..+++|+.|++++|.. ..++. +..+++|+.|+|++|.+. .++ .+..+++
T Consensus 133 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l----~~~~~-l~~l~~L~~L~L~~N~i~-~l~---~l~~l~~ 201 (291)
T 1h6t_A 133 LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQI----SDIVP-LAGLTKLQNLYLSKNHIS-DLR---ALAGLKN 201 (291)
T ss_dssp CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC----CCCGG-GTTCTTCCEEECCSSCCC-BCG---GGTTCTT
T ss_pred CCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcc----ccchh-hcCCCccCEEECCCCcCC-CCh---hhccCCC
Confidence 34444444444433322 2344444555555544421 11222 455555555555555433 232 2455677
Q ss_pred CCEEeCCCCCccccC
Q 044579 812 LQWLDLSGNNFESLP 826 (1103)
Q Consensus 812 L~~L~Ls~n~l~~lp 826 (1103)
|+.|++++|.++..|
T Consensus 202 L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 202 LDVLELFSQECLNKP 216 (291)
T ss_dssp CSEEEEEEEEEECCC
T ss_pred CCEEECcCCcccCCc
Confidence 777777777766554
No 120
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.50 E-value=8e-14 Score=145.66 Aligned_cols=70 Identities=20% Similarity=0.101 Sum_probs=35.5
Q ss_pred cCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCccccCccccCCCCCCEEeccCCcCCcccCcccccccc
Q 044579 781 ANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESLPSSIKQLSQLRKLDLSNCNMLLSLPELPLFLED 858 (1103)
Q Consensus 781 ~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~l~~lp~~~~~L~~ 858 (1103)
..+++|+.|+|++|.+. .++ +..+..+++|+.|+|++|.+. ..+++|+.|+++.|.+.+.+|..++.+..
T Consensus 121 ~~l~~L~~L~l~~N~l~-~~~-~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 121 DKLTQLKDLRLYQNQLK-SVP-DGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TTCTTCCEEECCSSCCS-CCC-TTTTTTCTTCCEEECCSCCBC------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ccCCcCCEEECCCCccc-eeC-HHHhccCCCccEEEecCCCee------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 33444444444444332 221 122344555666666655433 23456666666666666666665555543
No 121
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.50 E-value=5.7e-14 Score=145.34 Aligned_cols=107 Identities=16% Similarity=0.193 Sum_probs=51.9
Q ss_pred CCCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcccCCCCC
Q 044579 732 LTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSS 811 (1103)
Q Consensus 732 l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~ 811 (1103)
+++|++|++++|.+.+..|..++.+++|++|++++|..... .|..+..+++|++|+|++|.....+| .+..+++
T Consensus 87 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~---~~~~l~~l~~L~~L~L~~n~~i~~~~---~l~~l~~ 160 (197)
T 4ezg_A 87 LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDS---ILTKINTLPKVNSIDLSYNGAITDIM---PLKTLPE 160 (197)
T ss_dssp CTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGG---GHHHHTTCSSCCEEECCSCTBCCCCG---GGGGCSS
T ss_pred CCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcH---hHHHHhhCCCCCEEEccCCCCccccH---hhcCCCC
Confidence 34444444444443333334444444444444444322211 23334444455555555544333332 2445566
Q ss_pred CCEEeCCCCCccccCccccCCCCCCEEeccCCcC
Q 044579 812 LQWLDLSGNNFESLPSSIKQLSQLRKLDLSNCNM 845 (1103)
Q Consensus 812 L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~ 845 (1103)
|+.|++++|.++.++ .+..+++|+.|++++|++
T Consensus 161 L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 161 LKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CCEEECTTBCCCCCT-TGGGCSSCCEEEECBC--
T ss_pred CCEEECCCCCCcChH-HhccCCCCCEEEeeCccc
Confidence 666666666666665 566667777777777664
No 122
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.49 E-value=1.8e-12 Score=149.38 Aligned_cols=269 Identities=13% Similarity=0.127 Sum_probs=167.5
Q ss_pred CCCccccchhHHHHHHhhcc--cCCCeEEEEEeecCCChhHHHHHHHHHHHhcc------C-C-ceEEEEechhhhccc-
Q 044579 181 LDGLVGLNTRIEEMKSLLCL--ESHDVRIVGIWGMGGIGKTTIASVVFHQISRH------F-Q-GKCFMANVREKANKM- 249 (1103)
Q Consensus 181 ~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------F-~-~~~~~~~~~~~~~~~- 249 (1103)
++.++||+.+++++..++.. .....+.+.|+|++|+||||+|+++++..... + . ..+++. . ....
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~-~---~~~~~ 94 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN-C---REVGG 94 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE-H---HHHCS
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE-C---ccCCC
Confidence 37899999999999887763 23345689999999999999999999976443 2 2 234443 2 2223
Q ss_pred ChHHHHHHHHHhhhCCCCcccccc---chHHHHHhhcCCceEEEEeCCCCCHh------H-HHHHhCCCCccCCCcEEEE
Q 044579 250 GVIHVRDEVISQVLGENLKIGTLI---VPQNIKKRLQRVKVLIVLDDVNDEFT------Q-LESLAGGVDRFSPGSRIVI 319 (1103)
Q Consensus 250 ~~~~~~~~ll~~l~~~~~~~~~~~---~~~~l~~~L~~k~~LlVLDdv~~~~~------~-l~~l~~~~~~~~~gs~IIi 319 (1103)
....+..+++.++.+......... ....+.+.+..++.+|||||++ ... . +..+.... .+.+||+
T Consensus 95 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~-~l~~~~~~~~~l~~l~~~~----~~~~iI~ 169 (384)
T 2qby_B 95 TPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVD-TLVKRRGGDIVLYQLLRSD----ANISVIM 169 (384)
T ss_dssp CHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTH-HHHHSTTSHHHHHHHHTSS----SCEEEEE
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHH-HhccCCCCceeHHHHhcCC----cceEEEE
Confidence 455666777777654332211111 1225666676666699999996 322 2 33443332 6788999
Q ss_pred EeCchhhHh----hc--CcceEEEccCCChhHHHHHHHHhhhc---cCCCChhHHHHHHHHHHHhC---CChh-HHHHHH
Q 044579 320 TTRDKQVLD----KC--GVSYIYKVKRLEHDNALELFCRKAIR---QNSRSQDLLELSKEIVGYAK---GNPL-ALEVLG 386 (1103)
Q Consensus 320 TTR~~~v~~----~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~---~~~~~~~~~~~~~~i~~~~~---G~PL-al~~lg 386 (1103)
||+...... .. .....+++++++.++..+++...+.. ..... .+..+.++++++ |.|. |+..+-
T Consensus 170 ~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~ 246 (384)
T 2qby_B 170 ISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLF 246 (384)
T ss_dssp ECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred EECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 998753211 11 22238999999999999999987532 12222 245667777887 9886 444333
Q ss_pred hhc------CCCCHHHHHHHHHHhhhcCCcchhhHHHhhhcCCCHHHHHHHhhhhccCCCCCH-HHHHHHhc---C----
Q 044579 387 SSL------YQKSKQQWKVKLQNLKLISEPNIYNVLKISYDDLNPEEKKIFLDIACFFKGEDA-DFVTRIQD---D---- 452 (1103)
Q Consensus 387 ~~L------~~~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~~~-~~~~~~~~---~---- 452 (1103)
... ...+.+.+..+++.... ..+..+++.|++.++.++..++....+.+. +....+.. .
T Consensus 247 ~a~~~a~~~~~i~~~~v~~~~~~~~~-------~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~ 319 (384)
T 2qby_B 247 RAAQLASGGGIIRKEHVDKAIVDYEQ-------ERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLS 319 (384)
T ss_dssp HHHHHTTSSSCCCHHHHHHHHHHHHH-------HHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHhcCCCccCHHHHHHHHHHHhc-------chHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCC
Confidence 222 12467777777665432 346667789999999988888761110111 11222211 1
Q ss_pred ----CCchHHHhhccCeeEc
Q 044579 453 ----PTSLDNIVDKSLITIS 468 (1103)
Q Consensus 453 ----~~~l~~L~~~sLi~~~ 468 (1103)
..++..|.++++|...
T Consensus 320 ~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 320 YRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEE
Confidence 4567788889998764
No 123
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.49 E-value=2.6e-13 Score=143.98 Aligned_cols=150 Identities=25% Similarity=0.204 Sum_probs=88.6
Q ss_pred cEEecCCccceecCccccCCCCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccccCC-ccccCCCCCCeeec
Q 044579 713 TELNLCDTAIEEVPSSVECLTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELP-SSFANLEGLEKLVL 791 (1103)
Q Consensus 713 ~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp-~~~~~l~~L~~L~L 791 (1103)
+.++.+++.+..+|..+. ++|+.|+|++|.+.+..|..+..+++|++|+|++|.. ..+| ..+..+++|+.|+|
T Consensus 22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l----~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL----GALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC----CCCCTTTTTTCTTCCEEEC
T ss_pred CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC----CCcChhhcccCCCcCEEEC
Confidence 355566666666665443 5666666666666666566666666666666666542 2233 33466666666666
Q ss_pred cCCCCCCCCCCCcccCCCCCCCEEeCCCCCccccCccccCCCCCCEEeccCCcCCcccCccccccccceeccccccccc
Q 044579 792 VGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESLPSSIKQLSQLRKLDLSNCNMLLSLPELPLFLEDLEARNCKRLQFL 870 (1103)
Q Consensus 792 ~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~~~~c~~l~~~ 870 (1103)
++|.+. .++ +..+..+++|+.|+|++|+++.+|..+..+++|+.|+|++|++.+..+..+..+..|..+++.+|.+.
T Consensus 96 s~N~l~-~l~-~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 96 GTNQLT-VLP-SAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CSSCCC-CCC-TTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCCcCC-ccC-hhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 666544 232 23345566666666666666666666666666667776666655444444555555555555555443
No 124
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.49 E-value=3.3e-13 Score=142.13 Aligned_cols=151 Identities=21% Similarity=0.238 Sum_probs=114.4
Q ss_pred EEEccCCcCCCcCCCc-CCCccEEecCCccceecCc--cccCCCCCCEEecCCCcccccccccccCCCCCcEEeecCCCC
Q 044579 693 TIDFSFCVNLTEFPKI-SGKITELNLCDTAIEEVPS--SVECLTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLS 769 (1103)
Q Consensus 693 ~L~l~~c~~l~~~~~~-~~~L~~L~L~~~~i~~lp~--~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~ 769 (1103)
.+++++ +.++.+|.. ...++.|+|++|.++.++. .+..+++|+.|+|++|.+.+..+..|.++++|++|+|++|..
T Consensus 15 ~l~~s~-n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 93 (220)
T 2v70_A 15 TVDCSN-QKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL 93 (220)
T ss_dssp EEECCS-SCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EeEeCC-CCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCcc
Confidence 344443 234445543 3356788888888888743 478899999999999988877777889999999999998754
Q ss_pred CCccccCCccccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCcccc-CccccCCCCCCEEeccCCcCCcc
Q 044579 770 LETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESL-PSSIKQLSQLRKLDLSNCNMLLS 848 (1103)
Q Consensus 770 l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~n~~l~~ 848 (1103)
... .|..+..+++|++|+|++|.+.... +..+..+++|+.|+|++|+++.+ |..+..+++|+.|+|++|++...
T Consensus 94 ~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 94 ENV---QHKMFKGLESLKTLMLRSNRITCVG--NDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CCC---CGGGGTTCSSCCEEECTTSCCCCBC--TTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred Ccc---CHhHhcCCcCCCEEECCCCcCCeEC--HhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 322 3445788999999999998876555 34567789999999999999877 67888899999999999987654
Q ss_pred c
Q 044579 849 L 849 (1103)
Q Consensus 849 l 849 (1103)
.
T Consensus 169 c 169 (220)
T 2v70_A 169 C 169 (220)
T ss_dssp G
T ss_pred C
Confidence 3
No 125
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.47 E-value=5.4e-13 Score=140.51 Aligned_cols=140 Identities=26% Similarity=0.353 Sum_probs=112.8
Q ss_pred CCCcCCC-cCCCccEEecCCccceecCc-cccCCCCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccccCCc
Q 044579 701 NLTEFPK-ISGKITELNLCDTAIEEVPS-SVECLTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELPS 778 (1103)
Q Consensus 701 ~l~~~~~-~~~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~ 778 (1103)
.++.+|. ...+|+.|++++|.++.+|. .+..+++|+.|+|++|.+.+..|..|.++++|++|+|++|.. ..+|.
T Consensus 22 ~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l----~~l~~ 97 (220)
T 2v9t_B 22 GLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI----TELPK 97 (220)
T ss_dssp CCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC----CCCCT
T ss_pred CcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC----CccCH
Confidence 3444554 23578889999999998876 688899999999999998888888899999999999999753 33555
Q ss_pred c-ccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCccccCc-cccCCCCCCEEeccCCcCC
Q 044579 779 S-FANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESLPS-SIKQLSQLRKLDLSNCNML 846 (1103)
Q Consensus 779 ~-~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~n~~l 846 (1103)
. +..+++|+.|+|++|.+.... +..+..+++|+.|+|++|.++.+|. .+..+++|+.|+|++|++.
T Consensus 98 ~~f~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 98 SLFEGLFSLQLLLLNANKINCLR--VDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred hHccCCCCCCEEECCCCCCCEeC--HHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 4 678999999999999866544 4457788999999999999998875 4788999999999999854
No 126
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.46 E-value=5.5e-14 Score=152.49 Aligned_cols=171 Identities=16% Similarity=0.161 Sum_probs=132.4
Q ss_pred cccccccccccccccccccccccccCCcceEecCCCCCCCccCCCCCCCCCccEEEecCCCCCCcccccccCCCcccEEE
Q 044579 593 FELENLIELRLPYSKVEQIWEGKKEASKLKSIDLCHSQHLIRMPDLSEIPNLERTNFFNCTNLVLVPSSIQNFNNLSMLC 672 (1103)
Q Consensus 593 ~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~ 672 (1103)
..+.+++.++++++.++.++ .+..+++|+.|++++|.+ ..++.+..+++|++|++++|. +..++. +..+++|+.|+
T Consensus 16 ~~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i-~~l~~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 16 PGLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNI-QSLAGMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCC-CCCTTGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEE
T ss_pred HHHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCc-ccchHHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEE
Confidence 36788899999999999887 678899999999999974 466788899999999999875 455555 88999999999
Q ss_pred ccCCCCCcccCCCCCCCCCcEEEccCCcCCCcCCCcCCCccEEecCCccceecCccccCCCCCCEEecCCCccccccccc
Q 044579 673 FRGCESLRSFPRDIHFVSPVTIDFSFCVNLTEFPKISGKITELNLCDTAIEEVPSSVECLTNLKELYLSRCSTLNRLSTS 752 (1103)
Q Consensus 673 L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~ 752 (1103)
+++|. +..+|.... .+|+.|++++|.++.+| .+..+++|+.|+|++|.+.+. + .
T Consensus 92 L~~N~-l~~l~~~~~----------------------~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~-~-~ 145 (263)
T 1xeu_A 92 VNRNR-LKNLNGIPS----------------------ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSI-V-M 145 (263)
T ss_dssp CCSSC-CSCCTTCCC----------------------SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBC-G-G
T ss_pred CCCCc-cCCcCcccc----------------------CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCC-h-H
Confidence 99863 444433111 46777777777777765 488889999999999886654 4 5
Q ss_pred ccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCC
Q 044579 753 ICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLN 798 (1103)
Q Consensus 753 l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~ 798 (1103)
+..+++|+.|+|++|... .+ ..+..+++|+.|++++|.+..
T Consensus 146 l~~l~~L~~L~L~~N~i~----~~-~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 146 LGFLSKLEVLDLHGNEIT----NT-GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp GGGCTTCCEEECTTSCCC----BC-TTSTTCCCCCEEEEEEEEEEC
T ss_pred HccCCCCCEEECCCCcCc----ch-HHhccCCCCCEEeCCCCcccC
Confidence 888899999999987532 23 567888999999999887554
No 127
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.46 E-value=9.2e-14 Score=143.76 Aligned_cols=147 Identities=14% Similarity=0.139 Sum_probs=74.8
Q ss_pred ceEEEEEcCCCCCCCCCccccccccccccccccccccccccccCCcceEecCCCCCCCcc-CCCCCCCCCccEEEecCCC
Q 044579 575 KLRYLHWHGYPLKTLPFDFELENLIELRLPYSKVEQIWEGKKEASKLKSIDLCHSQHLIR-MPDLSEIPNLERTNFFNCT 653 (1103)
Q Consensus 575 ~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~-~p~l~~l~~L~~L~L~~~~ 653 (1103)
+|++|++++|.++.+|....+++|++|++++|.++.++ .+..+++|++|++++|.+... ++.++.+++|++|++++|.
T Consensus 45 ~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 123 (197)
T 4ezg_A 45 SLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA 123 (197)
T ss_dssp TCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSB
T ss_pred CccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCc
Confidence 45666666666665553335555555555555444432 344455555555555544332 2234555555555555544
Q ss_pred CCCcccccccCCCcccEEEccCCCCCcccCCCCCCCCCcEEEccCCcCCCcCCCcCCCccEEecCCccceecCccccCCC
Q 044579 654 NLVLVPSSIQNFNNLSMLCFRGCESLRSFPRDIHFVSPVTIDFSFCVNLTEFPKISGKITELNLCDTAIEEVPSSVECLT 733 (1103)
Q Consensus 654 ~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~ 733 (1103)
.....|..++.+++|++|++++|.. +..+| .+..++
T Consensus 124 i~~~~~~~l~~l~~L~~L~L~~n~~-------------------------------------------i~~~~-~l~~l~ 159 (197)
T 4ezg_A 124 HDDSILTKINTLPKVNSIDLSYNGA-------------------------------------------ITDIM-PLKTLP 159 (197)
T ss_dssp CBGGGHHHHTTCSSCCEEECCSCTB-------------------------------------------CCCCG-GGGGCS
T ss_pred cCcHhHHHHhhCCCCCEEEccCCCC-------------------------------------------ccccH-hhcCCC
Confidence 4333444444444444444444432 33333 355566
Q ss_pred CCCEEecCCCcccccccccccCCCCCcEEeecCCC
Q 044579 734 NLKELYLSRCSTLNRLSTSICKLKSLHELILSDCL 768 (1103)
Q Consensus 734 ~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~ 768 (1103)
+|+.|++++|.+.+ ++ .+..+++|+.|++++|.
T Consensus 160 ~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 160 ELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp SCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC-
T ss_pred CCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcc
Confidence 66666666665443 23 45666666666666653
No 128
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.46 E-value=6e-16 Score=186.21 Aligned_cols=191 Identities=18% Similarity=0.105 Sum_probs=137.2
Q ss_pred CCCCCCccEEEecCCCCCCcccccccCCCcccEEEccCCCCCcccCCCCCCCCCcEEEccCCcCCCcCCCcCCCccEEec
Q 044579 638 LSEIPNLERTNFFNCTNLVLVPSSIQNFNNLSMLCFRGCESLRSFPRDIHFVSPVTIDFSFCVNLTEFPKISGKITELNL 717 (1103)
Q Consensus 638 l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~L 717 (1103)
+..+++|+.|+|++| .+..+|.+++++++|+.|++++|..+..+|... ..+..
T Consensus 345 ~~~~~~L~~L~Ls~n-~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll----------~~~~~---------------- 397 (567)
T 1dce_A 345 SATDEQLFRCELSVE-KSTVLQSELESCKELQELEPENKWCLLTIILLM----------RALDP---------------- 397 (567)
T ss_dssp CSTTTTSSSCCCCHH-HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH----------HHHCT----------------
T ss_pred cccCccceeccCChh-hHHhhHHHHHHHHHHHHhccccchhhhhHHHHH----------Hhccc----------------
Confidence 355677777777775 356788888888888888886643222222100 00011
Q ss_pred CCccceecCccccCCCCCCEEe--------------cCCCcccccccccccCCCCCcEEeecCCCCCCccccCCccccCC
Q 044579 718 CDTAIEEVPSSVECLTNLKELY--------------LSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELPSSFANL 783 (1103)
Q Consensus 718 ~~~~i~~lp~~~~~l~~L~~L~--------------L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l 783 (1103)
...+|..++.+++|+.|+ +++|.+.. +|. ..|+.|+|++|. +..+|. ++.+
T Consensus 398 ----~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~-l~~-----~~L~~L~Ls~n~----l~~lp~-~~~l 462 (567)
T 1dce_A 398 ----LLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLK-MEY-----ADVRVLHLAHKD----LTVLCH-LEQL 462 (567)
T ss_dssp ----GGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH-HHH-----TTCSEEECTTSC----CSSCCC-GGGG
T ss_pred ----ccCCHHHHHHHHhcccCcchhhcccchhhhhhhhcccccc-cCc-----cCceEEEecCCC----CCCCcC-cccc
Confidence 112334444445555554 33333222 221 259999999974 344776 9999
Q ss_pred CCCCeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCccccCccccCCCCCCEEeccCCcCCccc-Cccccccccceec
Q 044579 784 EGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESLPSSIKQLSQLRKLDLSNCNMLLSL-PELPLFLEDLEAR 862 (1103)
Q Consensus 784 ~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~l~~l-p~~~~~L~~L~~~ 862 (1103)
++|+.|+|++|.+. .+| ..++.+++|+.|+|++|.|+.+| .+..+++|+.|+|++|++.+.. |..+..|+.|..+
T Consensus 463 ~~L~~L~Ls~N~l~-~lp--~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L 538 (567)
T 1dce_A 463 LLVTHLDLSHNRLR-ALP--PALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 538 (567)
T ss_dssp TTCCEEECCSSCCC-CCC--GGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred ccCcEeecCccccc-ccc--hhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEE
Confidence 99999999999866 775 46788999999999999999999 8999999999999999988876 8889999999999
Q ss_pred ccccccccCCCC
Q 044579 863 NCKRLQFLPEIP 874 (1103)
Q Consensus 863 ~c~~l~~~~~~p 874 (1103)
++++|.+.+..|
T Consensus 539 ~L~~N~l~~~~~ 550 (567)
T 1dce_A 539 NLQGNSLCQEEG 550 (567)
T ss_dssp ECTTSGGGGSSS
T ss_pred EecCCcCCCCcc
Confidence 999999876554
No 129
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.45 E-value=6.5e-13 Score=139.86 Aligned_cols=151 Identities=23% Similarity=0.274 Sum_probs=127.7
Q ss_pred cEEecCCccceecCccccCCCCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeecc
Q 044579 713 TELNLCDTAIEEVPSSVECLTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLV 792 (1103)
Q Consensus 713 ~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~ 792 (1103)
+.++++++.++.+|..+. ++|+.|+|++|.+.+..+..|..+++|+.|+|++|..... .|..+.++++|++|+|+
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~---~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL---APDAFQGLRSLNSLVLY 88 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE---CTTTTTTCSSCCEEECC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc---CHHHhhCCcCCCEEECC
Confidence 578899999999998765 7999999999998877777899999999999999864432 47889999999999999
Q ss_pred CCCCCCCCCCCcccCCCCCCCEEeCCCCCcccc-CccccCCCCCCEEeccCCcCCcccCccccccccceeccccccccc
Q 044579 793 GCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESL-PSSIKQLSQLRKLDLSNCNMLLSLPELPLFLEDLEARNCKRLQFL 870 (1103)
Q Consensus 793 ~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~~~~c~~l~~~ 870 (1103)
+|.+. .+| +..+..+++|+.|+|++|.++.+ |..+..+++|+.|+|++|++.+..+..+..+..|..+++.+|.+.
T Consensus 89 ~N~l~-~l~-~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 89 GNKIT-ELP-KSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp SSCCC-CCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCcCC-ccC-HhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 99865 554 34467899999999999999977 467899999999999999988777777777777777777777654
No 130
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.44 E-value=4.7e-13 Score=152.63 Aligned_cols=151 Identities=25% Similarity=0.207 Sum_probs=108.6
Q ss_pred CCCcCCC-cCCCccEEecCCccceecCcc-cc-CCCCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccccCC
Q 044579 701 NLTEFPK-ISGKITELNLCDTAIEEVPSS-VE-CLTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELP 777 (1103)
Q Consensus 701 ~l~~~~~-~~~~L~~L~L~~~~i~~lp~~-~~-~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp 777 (1103)
.++.+|. ....++.|+|++|.++.++.. +. .+++|+.|+|++|.+.+..+..|.++++|++|+|++|..... .+
T Consensus 29 ~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~---~~ 105 (361)
T 2xot_A 29 QLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL---DE 105 (361)
T ss_dssp CCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE---CT
T ss_pred CcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcC---CH
Confidence 3444553 234577888888888887764 44 788889999988888777777788888899999888753221 23
Q ss_pred ccccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCccccCccc----cCCCCCCEEeccCCcCCcccCccc
Q 044579 778 SSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESLPSSI----KQLSQLRKLDLSNCNMLLSLPELP 853 (1103)
Q Consensus 778 ~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~lp~~i----~~l~~L~~L~L~~n~~l~~lp~~~ 853 (1103)
..+.++++|+.|+|++|.+.... +..+..+++|+.|+|++|.|+.+|..+ ..+++|+.|+|++|++....+..+
T Consensus 106 ~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~ 183 (361)
T 2xot_A 106 FLFSDLQALEVLLLYNNHIVVVD--RNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDL 183 (361)
T ss_dssp TTTTTCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHH
T ss_pred HHhCCCcCCCEEECCCCcccEEC--HHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHh
Confidence 45788888899999888866544 445677888999999999888888765 568888999998888654333333
Q ss_pred ccc
Q 044579 854 LFL 856 (1103)
Q Consensus 854 ~~L 856 (1103)
..+
T Consensus 184 ~~l 186 (361)
T 2xot_A 184 QKL 186 (361)
T ss_dssp HHS
T ss_pred hhc
Confidence 333
No 131
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.44 E-value=8.7e-13 Score=138.89 Aligned_cols=154 Identities=20% Similarity=0.173 Sum_probs=129.0
Q ss_pred ccEEecCCccceecCccccCCCCCCEEecCCCccccccc-ccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeee
Q 044579 712 ITELNLCDTAIEEVPSSVECLTNLKELYLSRCSTLNRLS-TSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLV 790 (1103)
Q Consensus 712 L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp-~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~ 790 (1103)
-+.+++++|.++.+|..+. +.++.|+|++|.+.+..| ..+..+++|+.|+|++|..... .+..+.++++|++|+
T Consensus 13 ~~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i---~~~~~~~l~~L~~L~ 87 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI---EEGAFEGASGVNEIL 87 (220)
T ss_dssp TTEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEE---CTTTTTTCTTCCEEE
T ss_pred CCEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEE---CHHHhCCCCCCCEEE
Confidence 3589999999999998764 467899999999877755 4589999999999999753322 344789999999999
Q ss_pred ccCCCCCCCCCCCcccCCCCCCCEEeCCCCCcccc-CccccCCCCCCEEeccCCcCCcccCccccccccceecccccccc
Q 044579 791 LVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESL-PSSIKQLSQLRKLDLSNCNMLLSLPELPLFLEDLEARNCKRLQF 869 (1103)
Q Consensus 791 L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~~~~c~~l~~ 869 (1103)
|++|.+.... +..+..+++|++|+|++|.++.+ |..+..+++|+.|+|++|.+.+..|..+..+..|..+++.+|.+
T Consensus 88 Ls~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 88 LTSNRLENVQ--HKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp CCSSCCCCCC--GGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred CCCCccCccC--HhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 9999975544 45578899999999999999977 67889999999999999999888898888888888888888876
Q ss_pred cCC
Q 044579 870 LPE 872 (1103)
Q Consensus 870 ~~~ 872 (1103)
...
T Consensus 166 ~c~ 168 (220)
T 2v70_A 166 NCN 168 (220)
T ss_dssp ECS
T ss_pred cCC
Confidence 643
No 132
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.42 E-value=1.9e-12 Score=137.26 Aligned_cols=151 Identities=27% Similarity=0.283 Sum_probs=119.4
Q ss_pred cEEEccCCcCCCcCCC-cCCCccEEecCCccceec-CccccCCCCCCEEecCCCcccccccccccCCCCCcEEeecCCCC
Q 044579 692 VTIDFSFCVNLTEFPK-ISGKITELNLCDTAIEEV-PSSVECLTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLS 769 (1103)
Q Consensus 692 ~~L~l~~c~~l~~~~~-~~~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~ 769 (1103)
..++.++ ..+..+|. ...+|+.|+|++|.+..+ |..+..+++|+.|+|++|.+....+..+..+++|+.|+|++|..
T Consensus 22 ~~v~c~~-~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 100 (229)
T 3e6j_A 22 TTVDCRS-KRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL 100 (229)
T ss_dssp TEEECTT-SCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEeEccC-CCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcC
Confidence 3444443 33455554 346788999999999977 56789999999999999988665556689999999999999753
Q ss_pred CCccccCCc-cccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCccccCc-cccCCCCCCEEeccCCcCCc
Q 044579 770 LETITELPS-SFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESLPS-SIKQLSQLRKLDLSNCNMLL 847 (1103)
Q Consensus 770 l~~i~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~n~~l~ 847 (1103)
. .+|. .+..+++|+.|+|++|.+. .+| ..+..+++|+.|+|++|+++.+|. .+..+++|+.|+|++|++..
T Consensus 101 ~----~l~~~~~~~l~~L~~L~Ls~N~l~-~lp--~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 101 T----VLPSAVFDRLVHLKELFMCCNKLT-ELP--RGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp C----CCCTTTTTTCTTCCEEECCSSCCC-SCC--TTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred C----ccChhHhCcchhhCeEeccCCccc-ccC--cccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 3 3444 4688999999999999865 674 445789999999999999998884 57889999999999999765
Q ss_pred ccC
Q 044579 848 SLP 850 (1103)
Q Consensus 848 ~lp 850 (1103)
..+
T Consensus 174 ~c~ 176 (229)
T 3e6j_A 174 ECR 176 (229)
T ss_dssp TBG
T ss_pred Ccc
Confidence 543
No 133
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.41 E-value=7.5e-12 Score=144.20 Aligned_cols=302 Identities=13% Similarity=0.094 Sum_probs=173.8
Q ss_pred CCCCCccccchhHHHHHHhhccc--CCCeEEEEEeecCCChhHHHHHHHHHHHhccCC---ceEEEEechhhhcccChHH
Q 044579 179 TDLDGLVGLNTRIEEMKSLLCLE--SHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQ---GKCFMANVREKANKMGVIH 253 (1103)
Q Consensus 179 ~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~---~~~~~~~~~~~~~~~~~~~ 253 (1103)
..++.|+||+.+++++.+++... ....+.+.|+|++|+||||||+++++.....+. ..+|+. . ........
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~-~---~~~~~~~~ 92 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN-T---RQIDTPYR 92 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE-H---HHHCSHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE-C---CCCCCHHH
Confidence 44578999999999999988742 344678999999999999999999998766542 234444 2 22223444
Q ss_pred HHHHHHHhhhCCCCcccc-ccc-hHHHHHhhc--CCceEEEEeCCCC-----CHhHHHHHhCCCCc-cCCCcEEEEEeCc
Q 044579 254 VRDEVISQVLGENLKIGT-LIV-PQNIKKRLQ--RVKVLIVLDDVND-----EFTQLESLAGGVDR-FSPGSRIVITTRD 323 (1103)
Q Consensus 254 ~~~~ll~~l~~~~~~~~~-~~~-~~~l~~~L~--~k~~LlVLDdv~~-----~~~~l~~l~~~~~~-~~~gs~IIiTTR~ 323 (1103)
+...++..+......... ... ...+.+.+. +++.+||||+++. +.+.+..+...... ...+..+|+||+.
T Consensus 93 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~ 172 (386)
T 2qby_A 93 VLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITND 172 (386)
T ss_dssp HHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESC
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECC
Confidence 555555444221111110 011 113444443 4589999999962 12233333222111 1345677888886
Q ss_pred hhhHhhcC-------cceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhC---CChhHHHHHH-hhc---
Q 044579 324 KQVLDKCG-------VSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAK---GNPLALEVLG-SSL--- 389 (1103)
Q Consensus 324 ~~v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~---G~PLal~~lg-~~L--- 389 (1103)
........ ....+.+++++.++..+++...+........-..+..+.++++++ |.|..+..+. ...
T Consensus 173 ~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a 252 (386)
T 2qby_A 173 VKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIA 252 (386)
T ss_dssp GGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 64322211 125899999999999999988653211111112345667777777 9998443332 221
Q ss_pred --C---CCCHHHHHHHHHHhhhcCCcchhhHHHhhhcCCCHHHHHHHhhhhccCC-CCC---HHHH----HHH---hcC-
Q 044579 390 --Y---QKSKQQWKVKLQNLKLISEPNIYNVLKISYDDLNPEEKKIFLDIACFFK-GED---ADFV----TRI---QDD- 452 (1103)
Q Consensus 390 --~---~~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~-~~~---~~~~----~~~---~~~- 452 (1103)
. ..+.+.+..++.... ...+...+.++++.++.++..++.+.. +.. ...+ ..+ .+.
T Consensus 253 ~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~~ 325 (386)
T 2qby_A 253 ERMKDTKVKEEYVYMAKEEIE-------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGVE 325 (386)
T ss_dssp HHTTCSSCCHHHHHHHHHHHH-------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTCC
T ss_pred HhcCCCccCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCCC
Confidence 1 134555555555432 235666778899999999988886433 211 2111 111 111
Q ss_pred -------CCchHHHhhccCeeEcC-----CCeEEechhHHHHHHHhhhccccCcceeecchhhHHHHhcc
Q 044579 453 -------PTSLDNIVDKSLITISD-----ENRLQMHDLLQEMGQTIVRQKSISKRTRLWDHEDIYHVLKK 510 (1103)
Q Consensus 453 -------~~~l~~L~~~sLi~~~~-----~~~~~mHdlv~~~~~~i~~~e~~~~~~rl~~~~~i~~vl~~ 510 (1103)
..+++.|.+.++|.... .++|. ..+..|+++++..++.+
T Consensus 326 ~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~y~-------------------~~~l~~~~~~v~~~l~~ 376 (386)
T 2qby_A 326 AVTQRRVSDIINELDMVGILTAKVVNRGRYGKTK-------------------EIGLAVDKNIIVRSLIE 376 (386)
T ss_dssp CCCHHHHHHHHHHHHHHTSEEEEECCCTTSCCCE-------------------EEEESSCSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCEEEEeecCCCCCCeE-------------------EEEeCCCHHHHHHHHhc
Confidence 35677888889887641 11222 22345788888888875
No 134
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.41 E-value=1.3e-13 Score=171.37 Aligned_cols=126 Identities=22% Similarity=0.207 Sum_probs=55.0
Q ss_pred ccceecCccccCCCCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCC
Q 044579 720 TAIEEVPSSVECLTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNK 799 (1103)
Q Consensus 720 ~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~ 799 (1103)
|.+...|..+..+++|+.|+|++|.+. .+|..+.++++|++|+|++|.. ..+|..+++|++|++|+|++|.+. .
T Consensus 211 n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l----~~lp~~~~~l~~L~~L~Ls~N~l~-~ 284 (727)
T 4b8c_D 211 NRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSL----TELPAEIKNLSNLRVLDLSHNRLT-S 284 (727)
T ss_dssp -----------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCC----SCCCGGGGGGTTCCEEECTTSCCS-S
T ss_pred cceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcC----cccChhhhCCCCCCEEeCcCCcCC-c
Confidence 333333444444455555555554433 3444444455555555554421 124444555555555555555433 3
Q ss_pred CCCCcccCCCCCCCEEeCCCCCccccCccccCCCCCCEEeccCCcCCcccCccc
Q 044579 800 LPHSIDFCCLSSLQWLDLSGNNFESLPSSIKQLSQLRKLDLSNCNMLLSLPELP 853 (1103)
Q Consensus 800 lp~~~~~~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~l~~lp~~~ 853 (1103)
+| ..+..+++|++|+|++|.|+.+|..+..|++|+.|+|++|++.+.+|..+
T Consensus 285 lp--~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 285 LP--AELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp CC--SSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred cC--hhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 32 22344555555555555555555555555555555555555544444433
No 135
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.40 E-value=7.7e-12 Score=144.23 Aligned_cols=301 Identities=12% Similarity=0.100 Sum_probs=176.4
Q ss_pred CCCCccccchhHHHHHHhhccc--CCCeEEEEEeecCCChhHHHHHHHHHHHhccC-----Cc-eEEEEechhhhcccCh
Q 044579 180 DLDGLVGLNTRIEEMKSLLCLE--SHDVRIVGIWGMGGIGKTTIASVVFHQISRHF-----QG-KCFMANVREKANKMGV 251 (1103)
Q Consensus 180 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-----~~-~~~~~~~~~~~~~~~~ 251 (1103)
.++.++||+.+++++..++... ....+.+.|+|++|+||||+|+++++.....+ .. .+++. .....+.
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~----~~~~~~~ 92 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN----ARHRETP 92 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE----TTTSCSH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE----CCcCCCH
Confidence 4578999999999999988532 34467899999999999999999998764432 22 33443 2233445
Q ss_pred HHHHHHHHHhhhCCCCcccc-c-cchHHHHHhh--cCCceEEEEeCCCCCHh----H---HHHHhCCCCcc--CCCcEEE
Q 044579 252 IHVRDEVISQVLGENLKIGT-L-IVPQNIKKRL--QRVKVLIVLDDVNDEFT----Q---LESLAGGVDRF--SPGSRIV 318 (1103)
Q Consensus 252 ~~~~~~ll~~l~~~~~~~~~-~-~~~~~l~~~L--~~k~~LlVLDdv~~~~~----~---l~~l~~~~~~~--~~gs~II 318 (1103)
..+...++.++......... . .....+.+.+ .+++.+||||+++ ... . +..+....... ..+..+|
T Consensus 93 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~-~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I 171 (387)
T 2v1u_A 93 YRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEID-FLPKRPGGQDLLYRITRINQELGDRVWVSLV 171 (387)
T ss_dssp HHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTT-HHHHSTTHHHHHHHHHHGGGCC-----CEEE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHh-hhcccCCCChHHHhHhhchhhcCCCceEEEE
Confidence 56666777666332111111 0 1112444444 3568999999997 322 2 22222211111 3466788
Q ss_pred EEeCchhhHhhc------Cc-ceEEEccCCChhHHHHHHHHhhhc---cCCCChhHHHHHHHHHHHhC---CChhH-HHH
Q 044579 319 ITTRDKQVLDKC------GV-SYIYKVKRLEHDNALELFCRKAIR---QNSRSQDLLELSKEIVGYAK---GNPLA-LEV 384 (1103)
Q Consensus 319 iTTR~~~v~~~~------~~-~~~~~l~~L~~~ea~~Lf~~~a~~---~~~~~~~~~~~~~~i~~~~~---G~PLa-l~~ 384 (1103)
.||+........ .. ...+.+++++.++..+++...+.. ..... .+..+.++++++ |.|.. +..
T Consensus 172 ~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~~ 248 (387)
T 2v1u_A 172 GITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD---PDVVPLCAALAAREHGDARRALDL 248 (387)
T ss_dssp EECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC---SSHHHHHHHHHHSSSCCHHHHHHH
T ss_pred EEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhccCHHHHHHH
Confidence 888765321111 11 257899999999999999887532 11212 235677888888 99943 333
Q ss_pred HHhhcC-----C---CCHHHHHHHHHHhhhcCCcchhhHHHhhhcCCCHHHHHHHhhhhccCCCCC---HH----HHHHH
Q 044579 385 LGSSLY-----Q---KSKQQWKVKLQNLKLISEPNIYNVLKISYDDLNPEEKKIFLDIACFFKGED---AD----FVTRI 449 (1103)
Q Consensus 385 lg~~L~-----~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~~---~~----~~~~~ 449 (1103)
+..... + .+.+.+..++.... ...+..++..|++.++..+..++....+.. .. ....+
T Consensus 249 l~~a~~~a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~ 321 (387)
T 2v1u_A 249 LRVAGEIAERRREERVRREHVYSARAEIE-------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKEL 321 (387)
T ss_dssp HHHHHHHHHHTTCSCBCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 222210 1 35666666665542 234566778999999999888885544432 11 11111
Q ss_pred hc---C--------CCchHHHhhccCeeEcC-----CCeEEechhHHHHHHHhhhccccCcceeecchhhHHHHhccccc
Q 044579 450 QD---D--------PTSLDNIVDKSLITISD-----ENRLQMHDLLQEMGQTIVRQKSISKRTRLWDHEDIYHVLKKNKG 513 (1103)
Q Consensus 450 ~~---~--------~~~l~~L~~~sLi~~~~-----~~~~~mHdlv~~~~~~i~~~e~~~~~~rl~~~~~i~~vl~~~~~ 513 (1103)
.. . ...++.|...|++.... .+++ .+.+..|+++++..++.++..
T Consensus 322 ~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~g~~g~~-------------------~~~~l~~~~~~i~~~l~~~~~ 382 (387)
T 2v1u_A 322 TSTLGLEHVTLRRVSGIISELDMLGIVKSRVVSRGRYGKT-------------------REVSLDADRLAVENALSEDPF 382 (387)
T ss_dssp HHHTTCCCCCHHHHHHHHHHHHHTTSEEEEEEECGGGCEE-------------------EEEEECSCHHHHHHHHHHSTT
T ss_pred HHhcCCCCCCHHHHHHHHHHHHhCCCeEEEeecCCCCCce-------------------eEEEecCCHHHHHHHHhccHh
Confidence 10 0 34567777778777631 1112 123456888899888876654
Q ss_pred c
Q 044579 514 T 514 (1103)
Q Consensus 514 ~ 514 (1103)
.
T Consensus 383 ~ 383 (387)
T 2v1u_A 383 V 383 (387)
T ss_dssp G
T ss_pred h
Confidence 3
No 136
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.38 E-value=1e-12 Score=132.06 Aligned_cols=132 Identities=23% Similarity=0.196 Sum_probs=107.8
Q ss_pred CCCccEEecCCccce--ecCccccCCCCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccccCCccccCCCCC
Q 044579 709 SGKITELNLCDTAIE--EVPSSVECLTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELPSSFANLEGL 786 (1103)
Q Consensus 709 ~~~L~~L~L~~~~i~--~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L 786 (1103)
..+|+.|++++|.+. .+|..+..+++|+.|+|++|.+.+. ..+..+++|++|+|++|..... +|..+..+++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~---~~~~~~~l~~L 97 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGG---LDMLAEKLPNL 97 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSC---CCHHHHHCTTC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchH---HHHHHhhCCCC
Confidence 357888888888888 8888888999999999999986655 6788899999999999764433 67777779999
Q ss_pred CeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCccccCc----cccCCCCCCEEeccCCcCC
Q 044579 787 EKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESLPS----SIKQLSQLRKLDLSNCNML 846 (1103)
Q Consensus 787 ~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~lp~----~i~~l~~L~~L~L~~n~~l 846 (1103)
++|+|++|.+. .+|....+..+++|+.|++++|.++.+|. .+..+++|+.|++++|...
T Consensus 98 ~~L~Ls~N~l~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 98 THLNLSGNKLK-DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CEEECBSSSCC-SSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred CEEeccCCccC-cchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 99999998754 44333567788999999999999998886 7888999999999998743
No 137
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.38 E-value=1.2e-12 Score=149.35 Aligned_cols=99 Identities=15% Similarity=0.170 Sum_probs=56.6
Q ss_pred EEEEEcCCCCCCCCCccccccccccccccccccccccc-cc-cCCcceEecCCCCCCCccCCC-CCCCCCccEEEecCCC
Q 044579 577 RYLHWHGYPLKTLPFDFELENLIELRLPYSKVEQIWEG-KK-EASKLKSIDLCHSQHLIRMPD-LSEIPNLERTNFFNCT 653 (1103)
Q Consensus 577 r~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~-~~-~l~~L~~L~L~~~~~~~~~p~-l~~l~~L~~L~L~~~~ 653 (1103)
+.++++++.++.+|..+ ...++.|+|++|+++.++.. +. .+++|++|+|++|.+....+. |..+++|++|+|++|.
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 35666677777777544 23466677777777666544 33 666666666666665444432 5566666666666654
Q ss_pred CCCcccccccCCCcccEEEccCC
Q 044579 654 NLVLVPSSIQNFNNLSMLCFRGC 676 (1103)
Q Consensus 654 ~l~~~~~~i~~l~~L~~L~L~~~ 676 (1103)
.....+..+..+++|+.|+|++|
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N 122 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNN 122 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSS
T ss_pred CCcCCHHHhCCCcCCCEEECCCC
Confidence 33222334555555555555553
No 138
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.35 E-value=5.2e-12 Score=129.85 Aligned_cols=131 Identities=21% Similarity=0.230 Sum_probs=100.4
Q ss_pred cEEecCCccceecCccccCCCCCCEEecCCCcccccccc-cccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeec
Q 044579 713 TELNLCDTAIEEVPSSVECLTNLKELYLSRCSTLNRLST-SICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVL 791 (1103)
Q Consensus 713 ~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~-~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L 791 (1103)
+.++++++.++++|..+.. +|+.|+|++|.+.+..+. .+..+++|++|+|++|..... .|..+.++++|++|+|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI---EPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB---CTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCc---CHhHcCCcccCCEEEC
Confidence 5677888888888876543 788888888876655553 378888888888888754332 4677888888888888
Q ss_pred cCCCCCCCCCCCcccCCCCCCCEEeCCCCCcccc-CccccCCCCCCEEeccCCcCCcccC
Q 044579 792 VGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESL-PSSIKQLSQLRKLDLSNCNMLLSLP 850 (1103)
Q Consensus 792 ~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~n~~l~~lp 850 (1103)
++|.+.... +..+..+++|++|+|++|+++.+ |..+..+++|+.|+|++|++....+
T Consensus 86 s~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 86 GENKIKEIS--NKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CSCCCCEEC--SSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCCcCCccC--HHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 888865544 34467789999999999999865 6778889999999999998876654
No 139
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.33 E-value=2.9e-13 Score=168.14 Aligned_cols=131 Identities=16% Similarity=0.167 Sum_probs=62.8
Q ss_pred cccccccccccccccCCcceEecCCCCCCCccCCCCCCCCCccEEEecCCCCCCcccccccCCCcccEEEccCCCCCccc
Q 044579 603 LPYSKVEQIWEGKKEASKLKSIDLCHSQHLIRMPDLSEIPNLERTNFFNCTNLVLVPSSIQNFNNLSMLCFRGCESLRSF 682 (1103)
Q Consensus 603 L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~~~~l~~l 682 (1103)
+..|.+...+..+..+++|+.|+|++|.+....+.+..+++|++|+|++|.. ..+|.++++|++|+.|+|++|. +..+
T Consensus 208 ~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l-~~lp~~~~~l~~L~~L~Ls~N~-l~~l 285 (727)
T 4b8c_D 208 DIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSL-TELPAEIKNLSNLRVLDLSHNR-LTSL 285 (727)
T ss_dssp --------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCC-SCCCGGGGGGTTCCEEECTTSC-CSSC
T ss_pred ccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcC-cccChhhhCCCCCCEEeCcCCc-CCcc
Confidence 3344444444555566666666666665442222344556666666665433 2556566666666666666543 2233
Q ss_pred CCCCCCCCCcEEEccCCcCCCcCCCcCCCccEEecCCccceecCccccCCCCCCEEecCCCcccccccccccC
Q 044579 683 PRDIHFVSPVTIDFSFCVNLTEFPKISGKITELNLCDTAIEEVPSSVECLTNLKELYLSRCSTLNRLSTSICK 755 (1103)
Q Consensus 683 p~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~ 755 (1103)
|..+ ..+.+|++|+|++|.+..+|..|+.+++|+.|+|++|.+.+.+|..+..
T Consensus 286 p~~~--------------------~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 338 (727)
T 4b8c_D 286 PAEL--------------------GSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE 338 (727)
T ss_dssp CSSG--------------------GGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred Chhh--------------------cCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence 3322 0012334444444555556666666666777777766666666655543
No 140
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.33 E-value=1.4e-12 Score=128.08 Aligned_cols=126 Identities=24% Similarity=0.187 Sum_probs=82.2
Q ss_pred CCccEEecCCccce--ecCccccCCCCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccccCCccccCCCCCC
Q 044579 710 GKITELNLCDTAIE--EVPSSVECLTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELPSSFANLEGLE 787 (1103)
Q Consensus 710 ~~L~~L~L~~~~i~--~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~ 787 (1103)
.+|+.|++++|.+. .+|..+..+++|+.|++++|.+.+. ..++.+++|++|++++|..... +|..+..+++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~---~~~~~~~l~~L~ 91 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGG---LEVLAEKCPNLT 91 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSC---THHHHHHCTTCC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccch---HHHHhhhCCCCC
Confidence 45677777777776 6777677777777777777765544 5566777777777777643322 555556677777
Q ss_pred eeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCccccCc----cccCCCCCCEEecc
Q 044579 788 KLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESLPS----SIKQLSQLRKLDLS 841 (1103)
Q Consensus 788 ~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~lp~----~i~~l~~L~~L~L~ 841 (1103)
+|++++|.+.+ ++.+..+..+++|++|++++|.++.+|. .+..+++|+.|+++
T Consensus 92 ~L~ls~N~i~~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 92 HLNLSGNKIKD-LSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTSCCCS-HHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EEECCCCcCCC-hHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 77777776432 2212445666777777777777776664 46667777777665
No 141
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.32 E-value=7.4e-12 Score=135.68 Aligned_cols=166 Identities=21% Similarity=0.263 Sum_probs=78.6
Q ss_pred CCCcccEEEccCCCCCcccCCCCCCCCCcEEEccCCcCCCcCCC--cCCCccEEecCCccceecCccccCCCCCCEEecC
Q 044579 664 NFNNLSMLCFRGCESLRSFPRDIHFVSPVTIDFSFCVNLTEFPK--ISGKITELNLCDTAIEEVPSSVECLTNLKELYLS 741 (1103)
Q Consensus 664 ~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~~~--~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~ 741 (1103)
.+.++..++++++ .+..++....+++|+.|++++| .+..++. .+.+|+.|++++|.+..+|. +..+++|+.|+|+
T Consensus 17 ~l~~l~~l~l~~~-~i~~~~~~~~l~~L~~L~l~~n-~i~~l~~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 17 GLANAVKQNLGKQ-SVTDLVSQKELSGVQNFNGDNS-NIQSLAGMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHHTCS-CTTSEECHHHHTTCSEEECTTS-CCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHHHHhcCC-CcccccchhhcCcCcEEECcCC-CcccchHHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECC
Confidence 3445555666653 3344442225556666666654 3333332 22345555555555555544 5555555555555
Q ss_pred CCcccccccccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCC
Q 044579 742 RCSTLNRLSTSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNN 821 (1103)
Q Consensus 742 ~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~ 821 (1103)
+|.+.+ +|. +.. ++|+.|+|++|.. ..++ .+..+++|+.|+|++|.+.+ ++ .+..+++|+.|+|++|.
T Consensus 94 ~N~l~~-l~~-~~~-~~L~~L~L~~N~l----~~~~-~l~~l~~L~~L~Ls~N~i~~-~~---~l~~l~~L~~L~L~~N~ 161 (263)
T 1xeu_A 94 RNRLKN-LNG-IPS-ACLSRLFLDNNEL----RDTD-SLIHLKNLEILSIRNNKLKS-IV---MLGFLSKLEVLDLHGNE 161 (263)
T ss_dssp SSCCSC-CTT-CCC-SSCCEEECCSSCC----SBSG-GGTTCTTCCEEECTTSCCCB-CG---GGGGCTTCCEEECTTSC
T ss_pred CCccCC-cCc-ccc-CcccEEEccCCcc----CCCh-hhcCcccccEEECCCCcCCC-Ch---HHccCCCCCEEECCCCc
Confidence 554433 222 111 5555555555421 1122 34455555555555554322 21 23445555555555555
Q ss_pred ccccCccccCCCCCCEEeccCCcC
Q 044579 822 FESLPSSIKQLSQLRKLDLSNCNM 845 (1103)
Q Consensus 822 l~~lp~~i~~l~~L~~L~L~~n~~ 845 (1103)
++.+ ..+..+++|+.|++++|++
T Consensus 162 i~~~-~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 162 ITNT-GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp CCBC-TTSTTCCCCCEEEEEEEEE
T ss_pred Ccch-HHhccCCCCCEEeCCCCcc
Confidence 5544 3445555555555555543
No 142
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.28 E-value=2.3e-11 Score=124.96 Aligned_cols=126 Identities=23% Similarity=0.298 Sum_probs=93.3
Q ss_pred cEEecCCccceecCccccCCCCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeecc
Q 044579 713 TELNLCDTAIEEVPSSVECLTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLV 792 (1103)
Q Consensus 713 ~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~ 792 (1103)
+.++++++.++++|..+. ++|+.|+|++|.+. .+|..+.++++|+.|+|++|..... .+..+.++++|++|+|+
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i---~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTL---SNQSFSNMTQLLTLILS 86 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCC---CTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEe---CHhHccCCCCCCEEECC
Confidence 456777777777776553 57888888887654 5667777888888888887653322 34557788888888888
Q ss_pred CCCCCCCCCCCcccCCCCCCCEEeCCCCCccccCcc-ccCCCCCCEEeccCCcCC
Q 044579 793 GCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESLPSS-IKQLSQLRKLDLSNCNML 846 (1103)
Q Consensus 793 ~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~lp~~-i~~l~~L~~L~L~~n~~l 846 (1103)
+|.+.... +..+..+++|+.|+|++|.++.+|.. +..+++|+.|+|++|++.
T Consensus 87 ~N~l~~i~--~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 87 YNRLRCIP--PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SSCCCBCC--TTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCEeC--HHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 88755433 34567788999999999999988864 778899999999998864
No 143
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.25 E-value=4e-11 Score=121.50 Aligned_cols=131 Identities=27% Similarity=0.294 Sum_probs=103.7
Q ss_pred ccEEecCCccceecCccccCCCCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccccCCc-cccCCCCCCeee
Q 044579 712 ITELNLCDTAIEEVPSSVECLTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELPS-SFANLEGLEKLV 790 (1103)
Q Consensus 712 L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~-~~~~l~~L~~L~ 790 (1103)
.+.++++++.+..+|..+. ++|+.|++++|.+.+..+..+..+++|++|++++|... .+|. .+..+++|+.|+
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~ 82 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ----SLPDGVFDKLTKLTILY 82 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC----CCCTTTTTTCTTCCEEE
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce----EeChhHccCCCccCEEE
Confidence 4678888888888886543 68999999999877666666788999999999987532 3444 468899999999
Q ss_pred ccCCCCCCCCCCCcccCCCCCCCEEeCCCCCccccCccc-cCCCCCCEEeccCCcCCcccC
Q 044579 791 LVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESLPSSI-KQLSQLRKLDLSNCNMLLSLP 850 (1103)
Q Consensus 791 L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~lp~~i-~~l~~L~~L~L~~n~~l~~lp 850 (1103)
|++|.+.. +| +..+..+++|+.|+|++|.++.+|..+ ..+++|+.|+|++|++....|
T Consensus 83 l~~N~l~~-~~-~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 83 LHENKLQS-LP-NGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCSSCCCC-CC-TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCCCccc-cC-HHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 99988654 43 334677899999999999999888764 789999999999998776554
No 144
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.24 E-value=1.2e-11 Score=125.22 Aligned_cols=129 Identities=20% Similarity=0.234 Sum_probs=84.7
Q ss_pred CCccEEecCCccceecCccccCCCCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccccCCccc-cCCCCCCe
Q 044579 710 GKITELNLCDTAIEEVPSSVECLTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELPSSF-ANLEGLEK 788 (1103)
Q Consensus 710 ~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~-~~l~~L~~ 788 (1103)
.+|+.|++++|.++.+|......++|+.|+|++|.+.+. ..+..+++|++|+|++|. +..+|..+ ..+++|++
T Consensus 19 ~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~----l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNR----ICRIGEGLDQALPDLTE 92 (176)
T ss_dssp TSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSC----CCEECSCHHHHCTTCCE
T ss_pred CCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCc----ccccCcchhhcCCCCCE
Confidence 356667777777776654333334777777777766553 457777777777777764 22345443 67777777
Q ss_pred eeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCccccCcc----ccCCCCCCEEeccCCcC
Q 044579 789 LVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESLPSS----IKQLSQLRKLDLSNCNM 845 (1103)
Q Consensus 789 L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~lp~~----i~~l~~L~~L~L~~n~~ 845 (1103)
|+|++|.+ ..+|....+..+++|+.|++++|.++.+|.. +..+++|+.|++++|..
T Consensus 93 L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 93 LILTNNSL-VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp EECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred EECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 77777765 4443322456677777777777777777764 67777777777777764
No 145
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.23 E-value=1.9e-11 Score=122.74 Aligned_cols=132 Identities=23% Similarity=0.295 Sum_probs=107.7
Q ss_pred cCCCCCCEEecCCCccc-ccccccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcccCC
Q 044579 730 ECLTNLKELYLSRCSTL-NRLSTSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCC 808 (1103)
Q Consensus 730 ~~l~~L~~L~L~~~~~~-~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~ 808 (1103)
...++|+.|++++|.+. +.+|..+..+++|+.|++++|.. .. + ..+..+++|++|+|++|.+...+ +..+..
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l-~~---~-~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~ 93 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL-IS---V-SNLPKLPKLKKLELSENRIFGGL--DMLAEK 93 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCC-CC---C-SSCCCCSSCCEEEEESCCCCSCC--CHHHHH
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCC-CC---h-hhhccCCCCCEEECcCCcCchHH--HHHHhh
Confidence 44589999999999987 68898899999999999999863 33 4 67889999999999999987666 444566
Q ss_pred CCCCCEEeCCCCCccccC--ccccCCCCCCEEeccCCcCCcccC---ccccccccceeccccccc
Q 044579 809 LSSLQWLDLSGNNFESLP--SSIKQLSQLRKLDLSNCNMLLSLP---ELPLFLEDLEARNCKRLQ 868 (1103)
Q Consensus 809 l~~L~~L~Ls~n~l~~lp--~~i~~l~~L~~L~L~~n~~l~~lp---~~~~~L~~L~~~~c~~l~ 868 (1103)
+++|+.|+|++|.++.+| ..+..+++|+.|+|++|++.+..+ ..+..++.|..+++..+.
T Consensus 94 l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 94 LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred CCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 899999999999999887 788999999999999999765544 355556666666655554
No 146
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.23 E-value=3.3e-10 Score=130.55 Aligned_cols=278 Identities=12% Similarity=0.088 Sum_probs=162.1
Q ss_pred CCCCccccchhHHHHHHhhcc----cCCCeEEEEEeecCCChhHHHHHHHHHHHhccC-CceEEEEechhhhcccChHHH
Q 044579 180 DLDGLVGLNTRIEEMKSLLCL----ESHDVRIVGIWGMGGIGKTTIASVVFHQISRHF-QGKCFMANVREKANKMGVIHV 254 (1103)
Q Consensus 180 ~~~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~~~~~~~~~~ 254 (1103)
.++.++||+.+++++..++.. ..+..+.+.|+|++|+||||+|+.++....... ...+++. .........+
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~----~~~~~~~~~~ 90 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN----GFIYRNFTAI 90 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE----TTTCCSHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe----CccCCCHHHH
Confidence 447899999999999988864 222334899999999999999999999876542 2344443 1233345566
Q ss_pred HHHHHHhhhCCCCccc--cccchHHHHHhh--cCCceEEEEeCCCC-CHhHHHHHhCCCCccC----CCcEEEEEeCchh
Q 044579 255 RDEVISQVLGENLKIG--TLIVPQNIKKRL--QRVKVLIVLDDVND-EFTQLESLAGGVDRFS----PGSRIVITTRDKQ 325 (1103)
Q Consensus 255 ~~~ll~~l~~~~~~~~--~~~~~~~l~~~L--~~k~~LlVLDdv~~-~~~~l~~l~~~~~~~~----~gs~IIiTTR~~~ 325 (1103)
...++..+........ .......+...+ .+++.+||||+++. +...+..+...+.... .+..||++|++..
T Consensus 91 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 91 IGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp HHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred HHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 6666665532211111 001111333333 35689999999963 2344455544333221 4678888888764
Q ss_pred hHhhcC-------cceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHh---------CCChhHHHHHHhhc
Q 044579 326 VLDKCG-------VSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYA---------KGNPLALEVLGSSL 389 (1103)
Q Consensus 326 v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~---------~G~PLal~~lg~~L 389 (1103)
...... ....+.+++++.++..+++...+........-..+....+++++ +|.|..+..+....
T Consensus 171 ~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a 250 (389)
T 1fnn_A 171 VLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRS 250 (389)
T ss_dssp HHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHH
T ss_pred HHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHH
Confidence 332221 12378999999999999998876321111111235677888999 78875544333221
Q ss_pred C------C---CCHHHHHHHHHHhhhcCCcchhhHHHhhhcCCCHHHHHHHhhhhccC---CC--CCHHHHHH----Hhc
Q 044579 390 Y------Q---KSKQQWKVKLQNLKLISEPNIYNVLKISYDDLNPEEKKIFLDIACFF---KG--EDADFVTR----IQD 451 (1103)
Q Consensus 390 ~------~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~---~~--~~~~~~~~----~~~ 451 (1103)
. + .+.+....+..... .. .+.-.+..|+.+++.++..++.+. .+ .....+.. +..
T Consensus 251 ~~~a~~~~~~~i~~~~v~~~~~~~~---~~----~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~ 323 (389)
T 1fnn_A 251 AYAAQQNGRKHIAPEDVRKSSKEVL---FG----ISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCE 323 (389)
T ss_dssp HHHHHHTTCSSCCHHHHHHHHHHHS---CC----CCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcCHHHHHHHHHHHh---hh----hHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHH
Confidence 0 1 23333333333321 11 223335678888888888887654 22 22222211 110
Q ss_pred ----C-------CCchHHHhhccCeeEc
Q 044579 452 ----D-------PTSLDNIVDKSLITIS 468 (1103)
Q Consensus 452 ----~-------~~~l~~L~~~sLi~~~ 468 (1103)
. ...+..|.++++|...
T Consensus 324 ~~~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 324 EYGERPRVHSQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp HTTCCCCCHHHHHHHHHHHHHTTSSEEE
T ss_pred HcCCCCCCHHHHHHHHHHHHhCCCeEEe
Confidence 0 3578889999999875
No 147
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.21 E-value=1.5e-11 Score=120.68 Aligned_cols=127 Identities=24% Similarity=0.278 Sum_probs=103.2
Q ss_pred CCCCCCEEecCCCccc-ccccccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcccCCC
Q 044579 731 CLTNLKELYLSRCSTL-NRLSTSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCL 809 (1103)
Q Consensus 731 ~l~~L~~L~L~~~~~~-~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l 809 (1103)
..++|+.|++++|.+. +.+|..+..+++|+.|++++|.. .. + ..++.+++|++|++++|.+.+.+ +..+..+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l-~~---~-~~~~~l~~L~~L~Ls~n~i~~~~--~~~~~~l 87 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL-TS---I-ANLPKLNKLKKLELSDNRVSGGL--EVLAEKC 87 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCC-CC---C-TTCCCCTTCCEEECCSSCCCSCT--HHHHHHC
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCC-CC---c-hhhhcCCCCCEEECCCCcccchH--HHHhhhC
Confidence 4578999999999987 68898899999999999999743 22 4 67889999999999999987666 4445668
Q ss_pred CCCCEEeCCCCCccccC--ccccCCCCCCEEeccCCcCCcccC---ccccccccceeccc
Q 044579 810 SSLQWLDLSGNNFESLP--SSIKQLSQLRKLDLSNCNMLLSLP---ELPLFLEDLEARNC 864 (1103)
Q Consensus 810 ~~L~~L~Ls~n~l~~lp--~~i~~l~~L~~L~L~~n~~l~~lp---~~~~~L~~L~~~~c 864 (1103)
++|+.|++++|.++.+| ..+..+++|+.|++++|++.+..+ ..+..++.|..+++
T Consensus 88 ~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 88 PNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp TTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 99999999999999875 789999999999999998765544 34555555555443
No 148
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.21 E-value=6.9e-11 Score=121.41 Aligned_cols=125 Identities=27% Similarity=0.271 Sum_probs=100.5
Q ss_pred EEEccCCcCCCcCCC-cCCCccEEecCCccceecCcc--ccCCCCCCEEecCCCcccccccccccCCCCCcEEeecCCCC
Q 044579 693 TIDFSFCVNLTEFPK-ISGKITELNLCDTAIEEVPSS--VECLTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLS 769 (1103)
Q Consensus 693 ~L~l~~c~~l~~~~~-~~~~L~~L~L~~~~i~~lp~~--~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~ 769 (1103)
.++++++ .++.+|. ...+|+.|++++|.+..++.. +..+++|++|+|++|.+.+..|..|.++++|++|+|++|..
T Consensus 12 ~l~~s~~-~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 90 (192)
T 1w8a_A 12 TVDCTGR-GLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90 (192)
T ss_dssp EEECTTS-CCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC
T ss_pred EEEcCCC-CcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcC
Confidence 3444442 3344554 234788999999999988864 89999999999999999988899999999999999999764
Q ss_pred CCccccCCccccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCcc
Q 044579 770 LETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFE 823 (1103)
Q Consensus 770 l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~ 823 (1103)
... .|..+.++++|++|+|++|.+.+.. +..+..+++|+.|+|++|.++
T Consensus 91 ~~~---~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 91 KEI---SNKMFLGLHQLKTLNLYDNQISCVM--PGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CEE---CSSSSTTCTTCCEEECCSSCCCEEC--TTSSTTCTTCCEEECTTCCBC
T ss_pred Ccc---CHHHhcCCCCCCEEECCCCcCCeeC--HHHhhcCCCCCEEEeCCCCcc
Confidence 433 4456889999999999999987766 445678999999999999987
No 149
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.18 E-value=5.1e-10 Score=119.69 Aligned_cols=200 Identities=13% Similarity=0.096 Sum_probs=119.4
Q ss_pred CCCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHH
Q 044579 177 ESTDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRD 256 (1103)
Q Consensus 177 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~ 256 (1103)
.|.....++||+..++.+..++..+. ..+.+.|+|++|+||||+|+++++.....+..... . ...... ..
T Consensus 18 ~p~~~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~-~-------~~~~~~-~~ 87 (250)
T 1njg_A 18 RPQTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT-P-------CGVCDN-CR 87 (250)
T ss_dssp CCCSGGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSS-C-------CSCSHH-HH
T ss_pred CCccHHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC-C-------CcccHH-HH
Confidence 34445679999999999999887433 23478999999999999999999877544321100 0 000000 00
Q ss_pred HHHHhhhCCCCccc--c---ccchHHHHHh-----hcCCceEEEEeCCCC-CHhHHHHHhCCCCccCCCcEEEEEeCchh
Q 044579 257 EVISQVLGENLKIG--T---LIVPQNIKKR-----LQRVKVLIVLDDVND-EFTQLESLAGGVDRFSPGSRIVITTRDKQ 325 (1103)
Q Consensus 257 ~ll~~l~~~~~~~~--~---~~~~~~l~~~-----L~~k~~LlVLDdv~~-~~~~l~~l~~~~~~~~~gs~IIiTTR~~~ 325 (1103)
.+............ . ......+.+. ..+++.+||+||++. +...++.+...+.....+.++|+||+...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 88 EIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 167 (250)
T ss_dssp HHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGG
T ss_pred HHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 00000000000000 0 0000111121 134679999999963 23445555444433456788999987654
Q ss_pred hHh-h-cCcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhHHHHHHhh
Q 044579 326 VLD-K-CGVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLALEVLGSS 388 (1103)
Q Consensus 326 v~~-~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~lg~~ 388 (1103)
... . ......+++++++.++..+++...+....... ..+....++++++|+|..+..+...
T Consensus 168 ~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~G~~~~~~~~~~~ 230 (250)
T 1njg_A 168 KLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH--EPRALQLLARAAEGSLRDALSLTDQ 230 (250)
T ss_dssp GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCB--CHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 221 1 12246899999999999999998775433222 1356788999999999988776543
No 150
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.18 E-value=6.6e-11 Score=132.97 Aligned_cols=280 Identities=14% Similarity=0.083 Sum_probs=160.1
Q ss_pred cCcccceEEEecCCCCCccccCcceecCCCcccCCCceEEEEEcCCCCC--CCCCcccccccccccccccccccccc-cc
Q 044579 539 NMSNLRLLKFYMPERGGVPIMSSKVHLDQGLEDLPEKLRYLHWHGYPLK--TLPFDFELENLIELRLPYSKVEQIWE-GK 615 (1103)
Q Consensus 539 ~l~~Lr~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~--~lp~~~~l~~L~~L~L~~n~i~~l~~-~~ 615 (1103)
.+.+|+.|.+.++-.. ..+ ..+.....+|+.|++++|.+. ..+.. .++.+..+.+..+ .+|. .+
T Consensus 23 ~~~~l~~L~l~g~i~~--------~~~-~~l~~~l~~L~~LdLs~n~i~~~~~~~~-~~~~~~~~~~~~~---~I~~~aF 89 (329)
T 3sb4_A 23 EANSITHLTLTGKLNA--------EDF-RHLRDEFPSLKVLDISNAEIKMYSGKAG-TYPNGKFYIYMAN---FVPAYAF 89 (329)
T ss_dssp HHHHCSEEEEEEEECH--------HHH-HHHHHSCTTCCEEEEEEEEECCEEESSS-SSGGGCCEEECTT---EECTTTT
T ss_pred hhCceeEEEEeccccH--------HHH-HHHHHhhccCeEEecCcceeEEecCccc-ccccccccccccc---ccCHHHh
Confidence 3456778888654110 000 112221347999999999888 22221 1222344444444 3443 35
Q ss_pred cc--------CCcceEecCCCCCCCccCCC--CCCCCCccEEEecCCCCCCcccccccCCCcccEEEccCCC---CCccc
Q 044579 616 KE--------ASKLKSIDLCHSQHLIRMPD--LSEIPNLERTNFFNCTNLVLVPSSIQNFNNLSMLCFRGCE---SLRSF 682 (1103)
Q Consensus 616 ~~--------l~~L~~L~L~~~~~~~~~p~--l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~~~---~l~~l 682 (1103)
.+ +++|+.|+|.+ . +..+++ |.++++|+.|++.++......+..+..+.++..+.+.... ....+
T Consensus 90 ~~~~~~~~~g~~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i 167 (329)
T 3sb4_A 90 SNVVNGVTKGKQTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRW 167 (329)
T ss_dssp EEEETTEEEECTTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTT
T ss_pred cccccccccccCCCcEEECCc-c-ccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccc
Confidence 56 89999999988 4 444553 8999999999999876655555677777767666554411 11111
Q ss_pred CCCC--CCCCCc-EEEccCCcCCCc----CCCcCCCccEEecCCccceecCccc-cCCCCCCEEecCCCccccccccccc
Q 044579 683 PRDI--HFVSPV-TIDFSFCVNLTE----FPKISGKITELNLCDTAIEEVPSSV-ECLTNLKELYLSRCSTLNRLSTSIC 754 (1103)
Q Consensus 683 p~~~--~l~~L~-~L~l~~c~~l~~----~~~~~~~L~~L~L~~~~i~~lp~~~-~~l~~L~~L~L~~~~~~~~lp~~l~ 754 (1103)
.... .+.+|+ .+.+.....+.. ......++..+.+.++-...-...+ ..+++|+.|+|++|.+....+..|.
T Consensus 168 ~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~ 247 (329)
T 3sb4_A 168 EHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFA 247 (329)
T ss_dssp TTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTT
T ss_pred cccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhh
Confidence 1111 233333 333322211110 0001233444444443211111111 2377888888888776655556688
Q ss_pred CCCCCcEEeecCCCCCCccccCCccccCCCCCC-eeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCccccCc-cccCC
Q 044579 755 KLKSLHELILSDCLSLETITELPSSFANLEGLE-KLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESLPS-SIKQL 832 (1103)
Q Consensus 755 ~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~-~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~lp~-~i~~l 832 (1103)
++++|+.|+|.++ +..+ -+..|.++++|+ .|.+.+ . ...++ ...|.++++|+.|++++|+++.++. .+.++
T Consensus 248 ~~~~L~~l~l~~n--i~~I--~~~aF~~~~~L~~~l~l~~-~-l~~I~-~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~ 320 (329)
T 3sb4_A 248 QKKYLLKIKLPHN--LKTI--GQRVFSNCGRLAGTLELPA-S-VTAIE-FGAFMGCDNLRYVLATGDKITTLGDELFGNG 320 (329)
T ss_dssp TCTTCCEEECCTT--CCEE--CTTTTTTCTTCCEEEEECT-T-CCEEC-TTTTTTCTTEEEEEECSSCCCEECTTTTCTT
T ss_pred CCCCCCEEECCcc--ccee--hHHHhhCChhccEEEEEcc-c-ceEEc-hhhhhCCccCCEEEeCCCccCccchhhhcCC
Confidence 8888888888775 3332 234577788888 888876 2 34443 4567778888888888888887765 56778
Q ss_pred CCCCEEec
Q 044579 833 SQLRKLDL 840 (1103)
Q Consensus 833 ~~L~~L~L 840 (1103)
++|+.|+.
T Consensus 321 ~~L~~ly~ 328 (329)
T 3sb4_A 321 VPSKLIYK 328 (329)
T ss_dssp CCCCEEEC
T ss_pred cchhhhcc
Confidence 88887753
No 151
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.17 E-value=1.8e-10 Score=118.19 Aligned_cols=117 Identities=28% Similarity=0.300 Sum_probs=97.9
Q ss_pred CCcCCC-cCCCccEEecCCccceecCccccCCCCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccccCCccc
Q 044579 702 LTEFPK-ISGKITELNLCDTAIEEVPSSVECLTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELPSSF 780 (1103)
Q Consensus 702 l~~~~~-~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~ 780 (1103)
++.+|. ...+|++|++++|.++.+|..+..+++|+.|+|++|.+.+..+..|.++++|++|+|++|..... .|..+
T Consensus 22 l~~ip~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i---~~~~f 98 (193)
T 2wfh_A 22 LKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI---PPRTF 98 (193)
T ss_dssp CSSCCSCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC---CTTTT
T ss_pred CCcCCCCCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEe---CHHHh
Confidence 444443 34578999999999999999999999999999999999888888899999999999999764332 34578
Q ss_pred cCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCcc
Q 044579 781 ANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFE 823 (1103)
Q Consensus 781 ~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~ 823 (1103)
..+++|+.|+|++|.+. .+| +..+..+++|+.|+|++|.+.
T Consensus 99 ~~l~~L~~L~L~~N~l~-~~~-~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 99 DGLKSLRLLSLHGNDIS-VVP-EGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp TTCTTCCEEECCSSCCC-BCC-TTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCCEEECCCCCCC-eeC-hhhhhcCccccEEEeCCCCee
Confidence 99999999999999865 454 345778999999999999886
No 152
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.09 E-value=2.4e-10 Score=128.35 Aligned_cols=261 Identities=12% Similarity=0.061 Sum_probs=169.4
Q ss_pred hhhc-CcccceEEEecCCCCCccccCcceecCCCcccCCCceEEEEEcCCCCCCCCCcc--c--------cccccccccc
Q 044579 536 AFAN-MSNLRLLKFYMPERGGVPIMSSKVHLDQGLEDLPEKLRYLHWHGYPLKTLPFDF--E--------LENLIELRLP 604 (1103)
Q Consensus 536 ~f~~-l~~Lr~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~--~--------l~~L~~L~L~ 604 (1103)
.+.. +++|+.|+|++|.+... ....+ .++ .++.+.+..+ .+|... + +.+|+.|+|+
T Consensus 43 ~l~~~l~~L~~LdLs~n~i~~~-------~~~~~--~~~-~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~ 109 (329)
T 3sb4_A 43 HLRDEFPSLKVLDISNAEIKMY-------SGKAG--TYP-NGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILS 109 (329)
T ss_dssp HHHHSCTTCCEEEEEEEEECCE-------EESSS--SSG-GGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBC
T ss_pred HHHHhhccCeEEecCcceeEEe-------cCccc--ccc-cccccccccc---ccCHHHhcccccccccccCCCcEEECC
Confidence 3444 78899999999865311 11111 122 2444555444 455443 5 8999999999
Q ss_pred cccccccccc-cccCCcceEecCCCCCCCccCCC-CCCCCCccEEEecCCC---CCCc-ccccccCCCccc-EEEccCCC
Q 044579 605 YSKVEQIWEG-KKEASKLKSIDLCHSQHLIRMPD-LSEIPNLERTNFFNCT---NLVL-VPSSIQNFNNLS-MLCFRGCE 677 (1103)
Q Consensus 605 ~n~i~~l~~~-~~~l~~L~~L~L~~~~~~~~~p~-l~~l~~L~~L~L~~~~---~l~~-~~~~i~~l~~L~-~L~L~~~~ 677 (1103)
+ +++.++.. +.++++|+.|+|++|......+. |.++.++..+.+.... .... -+..+.++.+|+ .+.+....
T Consensus 110 ~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~ 188 (329)
T 3sb4_A 110 E-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG 188 (329)
T ss_dssp T-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC
T ss_pred c-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCC
Confidence 9 89988754 88999999999999886544433 7777767666554411 1111 122344555665 44444332
Q ss_pred CCcccC--CCCCCCCCcEEEccCCcCCC---cCCCcCCCccEEecCCccceecCc-cccCCCCCCEEecCCCcccccccc
Q 044579 678 SLRSFP--RDIHFVSPVTIDFSFCVNLT---EFPKISGKITELNLCDTAIEEVPS-SVECLTNLKELYLSRCSTLNRLST 751 (1103)
Q Consensus 678 ~l~~lp--~~~~l~~L~~L~l~~c~~l~---~~~~~~~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~ 751 (1103)
.+.... ..+...++..+.+.+.-... .+.....+|+.|+|.+|.++.+|. .|.++++|+.|+|.+| +...-+.
T Consensus 189 ~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~ 267 (329)
T 3sb4_A 189 KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQR 267 (329)
T ss_dssp CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTT
T ss_pred cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHH
Confidence 222110 11245556666665532111 111235689999999999999987 4899999999999997 5555556
Q ss_pred cccCCCCCc-EEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCEEeC
Q 044579 752 SICKLKSLH-ELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDL 817 (1103)
Q Consensus 752 ~l~~l~~L~-~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~L 817 (1103)
.|.++++|+ .|++.+ .+..+ -+..|.++++|+.|++++|.+ ..++ ...|.++++|+.|+.
T Consensus 268 aF~~~~~L~~~l~l~~--~l~~I--~~~aF~~c~~L~~l~l~~n~i-~~I~-~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 268 VFSNCGRLAGTLELPA--SVTAI--EFGAFMGCDNLRYVLATGDKI-TTLG-DELFGNGVPSKLIYK 328 (329)
T ss_dssp TTTTCTTCCEEEEECT--TCCEE--CTTTTTTCTTEEEEEECSSCC-CEEC-TTTTCTTCCCCEEEC
T ss_pred HhhCChhccEEEEEcc--cceEE--chhhhhCCccCCEEEeCCCcc-Cccc-hhhhcCCcchhhhcc
Confidence 799999999 999987 33332 246789999999999988774 4444 456888999999864
No 153
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.06 E-value=1.9e-10 Score=116.35 Aligned_cols=107 Identities=14% Similarity=0.192 Sum_probs=59.1
Q ss_pred ceEEEEEcCCCCCCCCCccccc-cccccccccccccccccccccCCcceEecCCCCCCCccCCC-CCCCCCccEEEecCC
Q 044579 575 KLRYLHWHGYPLKTLPFDFELE-NLIELRLPYSKVEQIWEGKKEASKLKSIDLCHSQHLIRMPD-LSEIPNLERTNFFNC 652 (1103)
Q Consensus 575 ~Lr~L~l~~~~l~~lp~~~~l~-~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~p~-l~~l~~L~~L~L~~~ 652 (1103)
+|+.|++++|.++.+|....+. +|++|+|++|.++.+ ..+..+++|++|+|++|.+....+. +..+++|++|++++|
T Consensus 20 ~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 98 (176)
T 1a9n_A 20 RDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN 98 (176)
T ss_dssp SCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSC
T ss_pred CceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCC
Confidence 4555555555555555433333 666666666666655 4555666666666666654433333 255666666666665
Q ss_pred CCCCcccc--cccCCCcccEEEccCCCCCcccCC
Q 044579 653 TNLVLVPS--SIQNFNNLSMLCFRGCESLRSFPR 684 (1103)
Q Consensus 653 ~~l~~~~~--~i~~l~~L~~L~L~~~~~l~~lp~ 684 (1103)
. +..+|. .+..+++|+.|++++|. +..+|.
T Consensus 99 ~-i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~ 130 (176)
T 1a9n_A 99 S-LVELGDLDPLASLKSLTYLCILRNP-VTNKKH 130 (176)
T ss_dssp C-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTT
T ss_pred c-CCcchhhHhhhcCCCCCEEEecCCC-CCCcHh
Confidence 3 244444 55666666666666643 334443
No 154
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.05 E-value=3.7e-09 Score=111.19 Aligned_cols=189 Identities=13% Similarity=0.146 Sum_probs=116.1
Q ss_pred CCCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhcc-CCceEEEEechhhhcccChHHHH
Q 044579 177 ESTDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRH-FQGKCFMANVREKANKMGVIHVR 255 (1103)
Q Consensus 177 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~~~~~~~~~~~ 255 (1103)
.|.....++|++..++++.+++.... .+.+.|+|++|+|||++|+.+++.+... +.......+. ....+...+
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~- 85 (226)
T 2chg_A 12 RPRTLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA---SDERGIDVV- 85 (226)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEET---TCTTCHHHH-
T ss_pred CCCCHHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecc---ccccChHHH-
Confidence 34445679999999999999987443 2348999999999999999999876433 2222222211 111122211
Q ss_pred HHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCCC-HhHHHHHhCCCCccCCCcEEEEEeCchhhH-hh-cCc
Q 044579 256 DEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVNDE-FTQLESLAGGVDRFSPGSRIVITTRDKQVL-DK-CGV 332 (1103)
Q Consensus 256 ~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~-~~~l~~l~~~~~~~~~gs~IIiTTR~~~v~-~~-~~~ 332 (1103)
...+....... .....++.+||+||++.- ....+.+...+.....+.++|+||+..... .. ...
T Consensus 86 ~~~~~~~~~~~-------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r 152 (226)
T 2chg_A 86 RHKIKEFARTA-------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSR 152 (226)
T ss_dssp HHHHHHHHTSC-------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTT
T ss_pred HHHHHHHhccc-------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHh
Confidence 11121111100 001256889999999732 233444444333345678899998865421 11 122
Q ss_pred ceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhHHHHHH
Q 044579 333 SYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLALEVLG 386 (1103)
Q Consensus 333 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~lg 386 (1103)
...+++++++.++..+++...+....... ..+....+++.++|+|..+..+.
T Consensus 153 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 153 CAVFRFKPVPKEAMKKRLLEICEKEGVKI--TEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHTCCB--CHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CceeecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHH
Confidence 34889999999999999988775433221 12566788899999998655443
No 155
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.01 E-value=3e-09 Score=107.55 Aligned_cols=111 Identities=27% Similarity=0.284 Sum_probs=90.0
Q ss_pred CCCccEEecCCccceecCcc-ccCCCCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccccCCc-cccCCCCC
Q 044579 709 SGKITELNLCDTAIEEVPSS-VECLTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELPS-SFANLEGL 786 (1103)
Q Consensus 709 ~~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~-~~~~l~~L 786 (1103)
..+|+.|++++|.+..+|.. +..+++|++|+|++|.+.+..+..+..+++|++|+|++|... .+|. .+..+++|
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~----~~~~~~~~~l~~L 102 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ----SLPNGVFDKLTQL 102 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC----CCCTTTTTTCTTC
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcc----ccCHHHhhCCccc
Confidence 35788888999988888764 688999999999999887766667899999999999997543 3444 46889999
Q ss_pred CeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCcccc
Q 044579 787 EKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESL 825 (1103)
Q Consensus 787 ~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~l 825 (1103)
++|+|++|.+. .+| +..+..+++|+.|+|++|.+...
T Consensus 103 ~~L~l~~N~l~-~~~-~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 103 KELALDTNQLK-SVP-DGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CEEECCSSCCS-CCC-TTTTTTCTTCCEEECCSSCBCCC
T ss_pred CEEECcCCcce-EeC-HHHhcCCcccCEEEecCCCeecc
Confidence 99999999865 554 34467789999999999988743
No 156
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.00 E-value=5.5e-12 Score=130.45 Aligned_cols=121 Identities=24% Similarity=0.255 Sum_probs=97.8
Q ss_pred cceecCccccCCCCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCC
Q 044579 721 AIEEVPSSVECLTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKL 800 (1103)
Q Consensus 721 ~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~l 800 (1103)
.++.+|..+..+++|+.|+|++|.+.+ +| .+..+++|+.|++++|. +..+|..+..+++|+.|+|++|.+.. +
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~----l~~l~~~~~~~~~L~~L~L~~N~l~~-l 108 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNL----IKKIENLDAVADTLEELWISYNQIAS-L 108 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEE----ECSCSSHHHHHHHCSEEEEEEEECCC-H
T ss_pred cHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCC----cccccchhhcCCcCCEEECcCCcCCc-C
Confidence 556677788889999999999987665 66 78889999999999864 34578777788899999999987554 4
Q ss_pred CCCcccCCCCCCCEEeCCCCCccccCc--cccCCCCCCEEeccCCcCCcccCc
Q 044579 801 PHSIDFCCLSSLQWLDLSGNNFESLPS--SIKQLSQLRKLDLSNCNMLLSLPE 851 (1103)
Q Consensus 801 p~~~~~~~l~~L~~L~Ls~n~l~~lp~--~i~~l~~L~~L~L~~n~~l~~lp~ 851 (1103)
| .+..+++|+.|+|++|.++.+|. .+..+++|+.|++++|++.+.+|.
T Consensus 109 ~---~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 109 S---GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp H---HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred C---ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 3 46678899999999999987764 688899999999999988776654
No 157
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.94 E-value=1.8e-08 Score=115.61 Aligned_cols=214 Identities=11% Similarity=0.080 Sum_probs=106.7
Q ss_pred ceEEEEEcCCCCCCCCCcc-ccccccccccccccccccc-cccccCCcceEecCCCCCCCccCCC-CCCCCCccEEEecC
Q 044579 575 KLRYLHWHGYPLKTLPFDF-ELENLIELRLPYSKVEQIW-EGKKEASKLKSIDLCHSQHLIRMPD-LSEIPNLERTNFFN 651 (1103)
Q Consensus 575 ~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~i~~l~-~~~~~l~~L~~L~L~~~~~~~~~p~-l~~l~~L~~L~L~~ 651 (1103)
+|+.+.+..+ ++.++... .-.+|+.+.|+. .++.+. ..+.++.+|+.++|.+|.+...... |. .++|+.+.|..
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~ 212 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPV 212 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCT
T ss_pred CccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCC
Confidence 4555655544 55554432 223566666664 566665 3466777777777777654333332 43 56777777764
Q ss_pred CCCCCccc-ccccCCCcccEEEccCCCCCcccCCCC-CCCCCcEEEccCCcCCCcCCCcCCCccEEecCCccceecCc-c
Q 044579 652 CTNLVLVP-SSIQNFNNLSMLCFRGCESLRSFPRDI-HFVSPVTIDFSFCVNLTEFPKISGKITELNLCDTAIEEVPS-S 728 (1103)
Q Consensus 652 ~~~l~~~~-~~i~~l~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~-~ 728 (1103)
+ +..++ ..+.++++|+.+.+..+ +..++... ...+ |+.+.+ .+.++.++. .
T Consensus 213 ~--l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~~~---------------------L~~i~l-p~~i~~I~~~a 266 (401)
T 4fdw_A 213 T--LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRESG---------------------ITTVKL-PNGVTNIASRA 266 (401)
T ss_dssp T--CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTTCC---------------------CSEEEE-ETTCCEECTTT
T ss_pred c--hheehhhHhhCCCCCCEEecCCC--ccCccccccccCC---------------------ccEEEe-CCCccEEChhH
Confidence 2 44443 45667777777777652 34443322 1122 333333 223344432 4
Q ss_pred ccCCCCCCEEecCCCccc-----ccccccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCC
Q 044579 729 VECLTNLKELYLSRCSTL-----NRLSTSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHS 803 (1103)
Q Consensus 729 ~~~l~~L~~L~L~~~~~~-----~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~ 803 (1103)
|.++++|+.+.+.++... ..-+..|.++++|+.+.|.++ +..+ -...|.++++|+.|.|.++ +..++ .
T Consensus 267 F~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I--~~~aF~~c~~L~~l~lp~~--l~~I~-~ 339 (401)
T 4fdw_A 267 FYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IRIL--GQGLLGGNRKVTQLTIPAN--VTQIN-F 339 (401)
T ss_dssp TTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEE--CTTTTTTCCSCCEEEECTT--CCEEC-T
T ss_pred hhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc--eEEE--hhhhhcCCCCccEEEECcc--ccEEc-H
Confidence 566677777777665432 122334555555555555531 2221 1223444455555555332 22222 2
Q ss_pred cccCCCCCCCEEeCCCCCcccc
Q 044579 804 IDFCCLSSLQWLDLSGNNFESL 825 (1103)
Q Consensus 804 ~~~~~l~~L~~L~Ls~n~l~~l 825 (1103)
..|.++ +|+.|++++|.+..+
T Consensus 340 ~aF~~~-~L~~l~l~~n~~~~l 360 (401)
T 4fdw_A 340 SAFNNT-GIKEVKVEGTTPPQV 360 (401)
T ss_dssp TSSSSS-CCCEEEECCSSCCBC
T ss_pred HhCCCC-CCCEEEEcCCCCccc
Confidence 233444 555555555544433
No 158
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.92 E-value=4.6e-09 Score=105.64 Aligned_cols=103 Identities=24% Similarity=0.347 Sum_probs=60.6
Q ss_pred cEEecCCccceecCccccCCCCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeecc
Q 044579 713 TELNLCDTAIEEVPSSVECLTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLV 792 (1103)
Q Consensus 713 ~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~ 792 (1103)
+.++++++.+..+|..+. ++|+.|+|++|.+.+..|..|.++++|++|+|++|. +..+|..
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~----l~~i~~~------------- 75 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK----LTAIPTG------------- 75 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC----CCCCCTT-------------
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC----CCccChh-------------
Confidence 467777777777777553 677777777777666556666666666666666642 2223322
Q ss_pred CCCCCCCCCCCcccCCCCCCCEEeCCCCCccccCcc-ccCCCCCCEEeccCCcCC
Q 044579 793 GCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESLPSS-IKQLSQLRKLDLSNCNML 846 (1103)
Q Consensus 793 ~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~lp~~-i~~l~~L~~L~L~~n~~l 846 (1103)
.+..+++|+.|+|++|+|+.+|.. +..+++|+.|+|++|++.
T Consensus 76 ------------~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 76 ------------VFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp ------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ------------HhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 233455555555555555555543 555566666666665543
No 159
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.92 E-value=4.7e-09 Score=105.20 Aligned_cols=105 Identities=24% Similarity=0.266 Sum_probs=62.1
Q ss_pred ccEEecCCccceecCccccCCCCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeec
Q 044579 712 ITELNLCDTAIEEVPSSVECLTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVL 791 (1103)
Q Consensus 712 L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L 791 (1103)
.+.|++++|.++.+|..+. ++|+.|+|++|.+.+..|..|.++++|++|+|++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N------------------------ 64 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN------------------------ 64 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS------------------------
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC------------------------
Confidence 4567777777777776553 66777777777666555555556666666666554
Q ss_pred cCCCCCCCCCCCcccCCCCCCCEEeCCCCCccccCcc-ccCCCCCCEEeccCCcCCc
Q 044579 792 VGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESLPSS-IKQLSQLRKLDLSNCNMLL 847 (1103)
Q Consensus 792 ~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~lp~~-i~~l~~L~~L~L~~n~~l~ 847 (1103)
.+. .+| +..+..+++|+.|+|++|+|+.+|.. +..+++|+.|+|++|++..
T Consensus 65 ---~l~-~l~-~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 65 ---QLT-VLP-AGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp ---CCC-CCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred ---CcC-ccC-hhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 322 222 22234456666666666666655543 5666666666666666543
No 160
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.89 E-value=1.1e-08 Score=114.49 Aligned_cols=187 Identities=16% Similarity=0.237 Sum_probs=114.5
Q ss_pred CCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhcc-CCc-eEEEEechhhhcccChHHHH
Q 044579 178 STDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRH-FQG-KCFMANVREKANKMGVIHVR 255 (1103)
Q Consensus 178 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~-~~~~~~~~~~~~~~~~~~~~ 255 (1103)
|.....++|++..++.+..++..+. .+.+.|+|++|+||||+|+.+++.+... +.. .+.+. . ....+.. ..
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~-~---~~~~~~~-~i 89 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELN-A---SDDRGID-VV 89 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEEC-T---TSCCSHH-HH
T ss_pred CCCHHHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEec-C---ccccChH-HH
Confidence 4445779999999999999987443 2338999999999999999999986432 221 22222 1 1111221 11
Q ss_pred HHHHHhhhCCCCccccccchHHHHHhh-cCCceEEEEeCCCC-CHhHHHHHhCCCCccCCCcEEEEEeCchhh-Hhh-cC
Q 044579 256 DEVISQVLGENLKIGTLIVPQNIKKRL-QRVKVLIVLDDVND-EFTQLESLAGGVDRFSPGSRIVITTRDKQV-LDK-CG 331 (1103)
Q Consensus 256 ~~ll~~l~~~~~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~-~~~~l~~l~~~~~~~~~gs~IIiTTR~~~v-~~~-~~ 331 (1103)
++++..+.... ..+ .+++.++|+||++. .....+.+...+....+++++|+||+...- ... ..
T Consensus 90 ~~~~~~~~~~~-------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~s 156 (323)
T 1sxj_B 90 RNQIKHFAQKK-------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQS 156 (323)
T ss_dssp HTHHHHHHHBC-------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHT
T ss_pred HHHHHHHHhcc-------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHh
Confidence 22222211000 011 34588999999973 123344444333334567888888876532 111 12
Q ss_pred cceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhH-HHHHH
Q 044579 332 VSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLA-LEVLG 386 (1103)
Q Consensus 332 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLa-l~~lg 386 (1103)
....+++.+++.++..+++...+....... ..+....+++.++|.|.. +..+.
T Consensus 157 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 157 QCAILRYSKLSDEDVLKRLLQIIKLEDVKY--TNDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHHHHHTCCB--CHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hceEEeecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 345899999999999999988764332221 125677899999999954 44443
No 161
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.84 E-value=7.8e-08 Score=110.31 Aligned_cols=130 Identities=8% Similarity=0.101 Sum_probs=85.3
Q ss_pred CccEEecCCccceecCcc-ccCCCCCCEEecCCCcccccccccccCCCCCcEEeecCCCCC-Ccccc-CCccccCCCCCC
Q 044579 711 KITELNLCDTAIEEVPSS-VECLTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSL-ETITE-LPSSFANLEGLE 787 (1103)
Q Consensus 711 ~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l-~~i~~-lp~~~~~l~~L~ 787 (1103)
+|+.+.+..+ ++.++.. |.+ .+|+.+.|.+ .+...-+..|.++++|+.+.+.++... ..+.. -+..|.++++|+
T Consensus 227 ~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~ 303 (401)
T 4fdw_A 227 QLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLA 303 (401)
T ss_dssp TCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCC
T ss_pred CCCEEecCCC-ccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCC
Confidence 4555555543 4555553 444 7888998854 344444567888999999998875432 11111 245678888999
Q ss_pred eeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCccccC-ccccCCCCCCEEeccCCcCCcc
Q 044579 788 KLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESLP-SSIKQLSQLRKLDLSNCNMLLS 848 (1103)
Q Consensus 788 ~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~lp-~~i~~l~~L~~L~L~~n~~l~~ 848 (1103)
.+.|.++ +..++ ...|.++++|+.|.|.. +++.++ ..+.++ +|+.|++.+|.....
T Consensus 304 ~l~l~~~--i~~I~-~~aF~~c~~L~~l~lp~-~l~~I~~~aF~~~-~L~~l~l~~n~~~~l 360 (401)
T 4fdw_A 304 RFEIPES--IRILG-QGLLGGNRKVTQLTIPA-NVTQINFSAFNNT-GIKEVKVEGTTPPQV 360 (401)
T ss_dssp EECCCTT--CCEEC-TTTTTTCCSCCEEEECT-TCCEECTTSSSSS-CCCEEEECCSSCCBC
T ss_pred eEEeCCc--eEEEh-hhhhcCCCCccEEEECc-cccEEcHHhCCCC-CCCEEEEcCCCCccc
Confidence 9998743 44554 45677888999999854 477665 456777 899999988865443
No 162
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.84 E-value=1.3e-08 Score=102.28 Aligned_cols=104 Identities=17% Similarity=0.134 Sum_probs=81.9
Q ss_pred cEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCccccCcc-ccCCCCCCEE
Q 044579 760 HELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESLPSS-IKQLSQLRKL 838 (1103)
Q Consensus 760 ~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~lp~~-i~~l~~L~~L 838 (1103)
+.++++++. +..+|..+. ++|+.|+|++|.+.+.. +..+..+++|+.|+|++|+|+.+|.. +..+++|+.|
T Consensus 15 ~~l~~~~n~----l~~iP~~~~--~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L 86 (174)
T 2r9u_A 15 TLVNCQNIR----LASVPAGIP--TDKQRLWLNNNQITKLE--PGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQL 86 (174)
T ss_dssp SEEECCSSC----CSSCCSCCC--TTCSEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cEEEeCCCC----CCccCCCcC--CCCcEEEeCCCCccccC--HHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEE
Confidence 566776643 344666553 78888999888865544 44577899999999999999999876 4899999999
Q ss_pred eccCCcCCcccCccccccccceecccccccccC
Q 044579 839 DLSNCNMLLSLPELPLFLEDLEARNCKRLQFLP 871 (1103)
Q Consensus 839 ~L~~n~~l~~lp~~~~~L~~L~~~~c~~l~~~~ 871 (1103)
+|++|++.+..+..+..+..|..+++.+|.+..
T Consensus 87 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 87 DLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 999999876655668888889888888887764
No 163
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.83 E-value=1.5e-08 Score=101.47 Aligned_cols=107 Identities=19% Similarity=0.099 Sum_probs=85.0
Q ss_pred CcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCccccCcc-ccCCCCCCE
Q 044579 759 LHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESLPSS-IKQLSQLRK 837 (1103)
Q Consensus 759 L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~lp~~-i~~l~~L~~ 837 (1103)
.+.|++++|. +..+|..+ .++|+.|+|++|.+.+.. +..+..+++|++|+|++|+|+.+|.. +..+++|+.
T Consensus 11 ~~~l~~s~n~----l~~ip~~~--~~~l~~L~L~~N~i~~~~--~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~ 82 (170)
T 3g39_A 11 GTTVDCSGKS----LASVPTGI--PTTTQVLYLYDNQITKLE--PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQ 82 (170)
T ss_dssp TTEEECTTSC----CSSCCSCC--CTTCSEEECCSSCCCCCC--TTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCEEEeCCCC----cCccCccC--CCCCcEEEcCCCcCCccC--hhhhcCcccCCEEECCCCCcCccChhhccCCCCCCE
Confidence 4567777643 34466655 378899999998866544 44577899999999999999999876 589999999
Q ss_pred EeccCCcCCcccCccccccccceecccccccccCCC
Q 044579 838 LDLSNCNMLLSLPELPLFLEDLEARNCKRLQFLPEI 873 (1103)
Q Consensus 838 L~L~~n~~l~~lp~~~~~L~~L~~~~c~~l~~~~~~ 873 (1103)
|+|++|++.+..+..+..+..|..+++.+|.+....
T Consensus 83 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 83 LSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred EECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 999999987766667888999999999999876543
No 164
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.81 E-value=6.5e-11 Score=122.31 Aligned_cols=126 Identities=14% Similarity=0.166 Sum_probs=92.3
Q ss_pred HhhhcCcccceEEEecCCCCCccccCcceecCCCcccCCCceEEEEEcCCCCCCCCCcc-cccccccccccccccccccc
Q 044579 535 QAFANMSNLRLLKFYMPERGGVPIMSSKVHLDQGLEDLPEKLRYLHWHGYPLKTLPFDF-ELENLIELRLPYSKVEQIWE 613 (1103)
Q Consensus 535 ~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~i~~l~~ 613 (1103)
..|.++++|++|++++|.+. .++ .+..++ +|++|++++|.++.+|..+ .+++|++|+|++|+++.+|
T Consensus 42 ~~~~~l~~L~~L~ls~n~l~---------~l~-~~~~l~-~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~- 109 (198)
T 1ds9_A 42 ATLSTLKACKHLALSTNNIE---------KIS-SLSGME-NLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS- 109 (198)
T ss_dssp HHHHHTTTCSEEECSEEEES---------CCC-CHHHHT-TCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-
T ss_pred HHHhcCCCCCEEECCCCCCc---------ccc-ccccCC-CCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-
Confidence 37888899999999887553 234 455555 7888888888888888766 5688888888888888876
Q ss_pred ccccCCcceEecCCCCCCCccC--CCCCCCCCccEEEecCCCCCCccccc----------ccCCCcccEEE
Q 044579 614 GKKEASKLKSIDLCHSQHLIRM--PDLSEIPNLERTNFFNCTNLVLVPSS----------IQNFNNLSMLC 672 (1103)
Q Consensus 614 ~~~~l~~L~~L~L~~~~~~~~~--p~l~~l~~L~~L~L~~~~~l~~~~~~----------i~~l~~L~~L~ 672 (1103)
.+..+++|++|+|++|.+.... +.+..+++|++|++++|......|.. +..+++|+.|+
T Consensus 110 ~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 110 GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 5778888888888888754322 24777888888888887654444432 66777777776
No 165
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.77 E-value=5.8e-08 Score=108.69 Aligned_cols=186 Identities=16% Similarity=0.181 Sum_probs=113.2
Q ss_pred CCCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccC-Cc-eEEEEechhhhcccChHHH
Q 044579 177 ESTDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHF-QG-KCFMANVREKANKMGVIHV 254 (1103)
Q Consensus 177 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~-~~~~~~~~~~~~~~~~~~~ 254 (1103)
.|....+++|++..++.+..++..+. ...+.|+|++|+||||+|+.+++.+.... .. .+.+. . +...+...
T Consensus 20 ~p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~-~---~~~~~~~~- 92 (327)
T 1iqp_A 20 RPQRLDDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELN-A---SDERGINV- 92 (327)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEE-T---TCHHHHHT-
T ss_pred CCCCHHHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEee-c---cccCchHH-
Confidence 34455779999999999999887543 33489999999999999999999764332 11 11221 1 11001100
Q ss_pred HHHHHHhhhCCCCccccccchHHHHHhh-cCCceEEEEeCCCC-CHhHHHHHhCCCCccCCCcEEEEEeCchhh-Hhhc-
Q 044579 255 RDEVISQVLGENLKIGTLIVPQNIKKRL-QRVKVLIVLDDVND-EFTQLESLAGGVDRFSPGSRIVITTRDKQV-LDKC- 330 (1103)
Q Consensus 255 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~-~~~~l~~l~~~~~~~~~gs~IIiTTR~~~v-~~~~- 330 (1103)
..+.+...... ..+ .+++.++|+||++. .....+.+...+.....++++|+||..... ....
T Consensus 93 ~~~~~~~~~~~--------------~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~ 158 (327)
T 1iqp_A 93 IREKVKEFART--------------KPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQ 158 (327)
T ss_dssp THHHHHHHHHS--------------CCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred HHHHHHHHHhh--------------CCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHH
Confidence 01111111000 001 25678999999973 234445554444444567889988876532 1111
Q ss_pred CcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhHHHHH
Q 044579 331 GVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLALEVL 385 (1103)
Q Consensus 331 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l 385 (1103)
.....+++.+++.++..+++...+...... -..+....+++.++|.|..+..+
T Consensus 159 sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~~~~~ 211 (327)
T 1iqp_A 159 SRCAIFRFRPLRDEDIAKRLRYIAENEGLE--LTEEGLQAILYIAEGDMRRAINI 211 (327)
T ss_dssp HTEEEEECCCCCHHHHHHHHHHHHHTTTCE--ECHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhCcEEEecCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHCCCCHHHHHHH
Confidence 123478999999999999998876433221 12356778889999999865444
No 166
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.74 E-value=6.7e-07 Score=99.85 Aligned_cols=252 Identities=13% Similarity=0.146 Sum_probs=144.9
Q ss_pred CCCCCCccccchhHHHHHHhhcc---cCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHH
Q 044579 178 STDLDGLVGLNTRIEEMKSLLCL---ESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHV 254 (1103)
Q Consensus 178 ~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~ 254 (1103)
|...+++||++..++++...+.. .....+.+.|+|++|+|||++|+++++.....| .++. . .......
T Consensus 8 p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~---~~~~-~---~~~~~~~-- 78 (324)
T 1hqc_A 8 PKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL---RVTS-G---PAIEKPG-- 78 (324)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCE---EEEC-T---TTCCSHH--
T ss_pred cccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCE---EEEe-c---cccCChH--
Confidence 44567899999999998887752 122345788999999999999999998764332 2222 1 1111111
Q ss_pred HHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCCC-HhHHHHHhCCCCc------------------cCCCc
Q 044579 255 RDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVNDE-FTQLESLAGGVDR------------------FSPGS 315 (1103)
Q Consensus 255 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~-~~~l~~l~~~~~~------------------~~~gs 315 (1103)
++...+ ... ..++.+|+||+++.- ....+.+...+.. ..++.
T Consensus 79 --~l~~~l----------------~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (324)
T 1hqc_A 79 --DLAAIL----------------ANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRF 139 (324)
T ss_dssp --HHHHHH----------------TTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCC
T ss_pred --HHHHHH----------------HHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCE
Confidence 111111 000 134678999999732 2222323211110 01345
Q ss_pred EEEEEeCchhhH-hhc--CcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhHHHHHHhhcCC-
Q 044579 316 RIVITTRDKQVL-DKC--GVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLALEVLGSSLYQ- 391 (1103)
Q Consensus 316 ~IIiTTR~~~v~-~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~lg~~L~~- 391 (1103)
++|.||...... ... .....+.+.+++.+|..+++...+....... ..+....++++++|+|..+..+...+..
T Consensus 140 ~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~G~~r~l~~~l~~~~~~ 217 (324)
T 1hqc_A 140 TLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRI--TEEAALEIGRRSRGTMRVAKRLFRRVRDF 217 (324)
T ss_dssp EEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCC--CHHHHHHHHHHSCSCHHHHHHHHHHHTTT
T ss_pred EEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 677777644321 111 2235889999999999999988764332221 2356788999999999887766544321
Q ss_pred --------CCHHHHHHHHHHhhhcCCcchhhHHHhhhcCCCHHHHHHHhhhhccCCC--CCHHHHHHHhcC-----CCch
Q 044579 392 --------KSKQQWKVKLQNLKLISEPNIYNVLKISYDDLNPEEKKIFLDIACFFKG--EDADFVTRIQDD-----PTSL 456 (1103)
Q Consensus 392 --------~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~--~~~~~~~~~~~~-----~~~l 456 (1103)
.+.+.....+.. +......+++.++..+..++....+ .....+...++- ...+
T Consensus 218 a~~~~~~~i~~~~~~~~~~~------------~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l 285 (324)
T 1hqc_A 218 AQVAGEEVITRERALEALAA------------LGLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVH 285 (324)
T ss_dssp STTTSCSCCCHHHHHHHHHH------------HTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHT
T ss_pred HHHhcCCCCCHHHHHHHHHH------------hcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHH
Confidence 133333333322 2233456788888888776654333 345555555544 1222
Q ss_pred H-HHhhccCeeEcCCC
Q 044579 457 D-NIVDKSLITISDEN 471 (1103)
Q Consensus 457 ~-~L~~~sLi~~~~~~ 471 (1103)
. .+++.++|.....+
T Consensus 286 ~~~~i~~~li~~~~~g 301 (324)
T 1hqc_A 286 EPYLIRQGLLKRTPRG 301 (324)
T ss_dssp HHHHHHTTSEEEETTE
T ss_pred hHHHHHhcchhcCCcc
Confidence 3 37788999876333
No 167
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.61 E-value=2e-06 Score=98.90 Aligned_cols=286 Identities=13% Similarity=0.120 Sum_probs=157.8
Q ss_pred ceeechHhhhcCcccceEEEecCCCCCccccCcceecCCCcccCCCceEEEEEcCCCCCCCCCcc--ccccccccccccc
Q 044579 529 DIHLSSQAFANMSNLRLLKFYMPERGGVPIMSSKVHLDQGLEDLPEKLRYLHWHGYPLKTLPFDF--ELENLIELRLPYS 606 (1103)
Q Consensus 529 ~~~~~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~--~l~~L~~L~L~~n 606 (1103)
...+...+|.++.+|+.+.+..+ ...+....+.-..+|+.+++..+ ++.++... .+.+|+.+.++.+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~----------i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~ 127 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST----------VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM 127 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT----------CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC----------ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc
Confidence 45678889999999999998532 22344433333347888887643 66665443 5677777776644
Q ss_pred cccccc-cccccCCcceEecCCCCCCCccCCCCCCCCCccEEEecCCCCCCccc-ccccCCCcccEEEccCCCCCcccCC
Q 044579 607 KVEQIW-EGKKEASKLKSIDLCHSQHLIRMPDLSEIPNLERTNFFNCTNLVLVP-SSIQNFNNLSMLCFRGCESLRSFPR 684 (1103)
Q Consensus 607 ~i~~l~-~~~~~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~~~~l~~~~-~~i~~l~~L~~L~L~~~~~l~~lp~ 684 (1103)
+..+. ..+.+...+......... ......|.++++|+.+.+.++ +..++ ..+.++.+|+.+.+..+ ++.++.
T Consensus 128 -l~~i~~~aF~~~~~~~~~~~~~~~-~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~ 201 (394)
T 4fs7_A 128 -LKSIGVEAFKGCDFKEITIPEGVT-VIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN--LKIIRD 201 (394)
T ss_dssp -CCEECTTTTTTCCCSEEECCTTCC-EECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECT
T ss_pred -eeeecceeeecccccccccCcccc-ccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC--ceEeCc
Confidence 33333 234444433333332221 111123777788888877642 23333 45666777777776542 444443
Q ss_pred CC--CCCCCcEEEccCCcC-CCcCCCcCCCccEEecCCccceecCc-cccCCCCCCEEecCCCcccccccccccCCCCCc
Q 044579 685 DI--HFVSPVTIDFSFCVN-LTEFPKISGKITELNLCDTAIEEVPS-SVECLTNLKELYLSRCSTLNRLSTSICKLKSLH 760 (1103)
Q Consensus 685 ~~--~l~~L~~L~l~~c~~-l~~~~~~~~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~ 760 (1103)
.. ....|+.+.+..... +....-...+|+.+.+..+ +..+.. .+..+.+|+.+.+..+. .......+..+..|+
T Consensus 202 ~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~ 279 (394)
T 4fs7_A 202 YCFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNK-LRIGGSLFYNCSGLK 279 (394)
T ss_dssp TTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTT-CEECSCTTTTCTTCC
T ss_pred hhhccccccceeecCCCceEeehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCc-ceeeccccccccccc
Confidence 32 344444444332110 1111111234555555432 233322 35667777777776542 333344566677777
Q ss_pred EEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCccccC-ccccCCCCCCEEe
Q 044579 761 ELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESLP-SSIKQLSQLRKLD 839 (1103)
Q Consensus 761 ~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~lp-~~i~~l~~L~~L~ 839 (1103)
.+.+... .+ ....+..+.+|+.+.+.++ ...++ ..+|.++.+|+.++|.. .++.++ ..+.++.+|+.++
T Consensus 280 ~~~~~~~----~i--~~~~F~~~~~L~~i~l~~~--i~~I~-~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~ 349 (394)
T 4fs7_A 280 KVIYGSV----IV--PEKTFYGCSSLTEVKLLDS--VKFIG-EEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNIN 349 (394)
T ss_dssp EEEECSS----EE--CTTTTTTCTTCCEEEECTT--CCEEC-TTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEEC
T ss_pred eeccCce----ee--ccccccccccccccccccc--cceec-hhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEE
Confidence 7766542 11 1234566777888877653 33343 34567778888888864 366664 4567778888887
Q ss_pred ccCC
Q 044579 840 LSNC 843 (1103)
Q Consensus 840 L~~n 843 (1103)
|..+
T Consensus 350 lp~~ 353 (394)
T 4fs7_A 350 FPLS 353 (394)
T ss_dssp CCTT
T ss_pred ECcc
Confidence 7654
No 168
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.59 E-value=6.1e-07 Score=99.90 Aligned_cols=184 Identities=13% Similarity=0.161 Sum_probs=112.3
Q ss_pred CCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhc-cCCc-eEEEEechhhhcccChHHHH
Q 044579 178 STDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISR-HFQG-KCFMANVREKANKMGVIHVR 255 (1103)
Q Consensus 178 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~-~~~~~~~~~~~~~~~~~~~~ 255 (1103)
|...++++|++..++.+..++..+. ...+.++|++|+|||++|+.+++.+.. .+.. .+.+. .........+....
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 89 (319)
T 2chq_A 13 PRTLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN-ASDERGIDVVRHKI 89 (319)
T ss_dssp CSSGGGSCSCHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEE-TTSTTCTTTSSHHH
T ss_pred CCCHHHHhCCHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEe-CccccChHHHHHHH
Confidence 3445679999999999999886433 234899999999999999999987632 2211 11222 11100000000100
Q ss_pred HHHHHhhhCCCCccccccchHHHHHhh-cCCceEEEEeCCCC-CHhHHHHHhCCCCccCCCcEEEEEeCchh-hHhh-cC
Q 044579 256 DEVISQVLGENLKIGTLIVPQNIKKRL-QRVKVLIVLDDVND-EFTQLESLAGGVDRFSPGSRIVITTRDKQ-VLDK-CG 331 (1103)
Q Consensus 256 ~~ll~~l~~~~~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~-~~~~l~~l~~~~~~~~~gs~IIiTTR~~~-v~~~-~~ 331 (1103)
..... ...+ .+++.++|+|+++. .....+.+...+.....+.++|+||.... +... ..
T Consensus 90 ~~~~~------------------~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s 151 (319)
T 2chq_A 90 KEFAR------------------TAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQS 151 (319)
T ss_dssp HHHHH------------------SCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHT
T ss_pred HHHHh------------------cCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHh
Confidence 00000 0001 25678999999973 23445666666665567788888887553 2111 12
Q ss_pred cceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhHHHH
Q 044579 332 VSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLALEV 384 (1103)
Q Consensus 332 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 384 (1103)
....+++.+++.++..+++...+...+... ..+....+++.++|.+..+..
T Consensus 152 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i--~~~~l~~l~~~~~G~~r~~~~ 202 (319)
T 2chq_A 152 RCAVFRFKPVPKEAMKKRLLEICEKEGVKI--TEDGLEALIYISGGDFRKAIN 202 (319)
T ss_dssp TCEEEECCCCCHHHHHHHHHHHHHTTCCCB--CHHHHHHHHHTTTTCHHHHHH
T ss_pred hCeEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHH
Confidence 235899999999999999988764333221 235567888889999876543
No 169
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.56 E-value=1.5e-07 Score=106.33 Aligned_cols=103 Identities=24% Similarity=0.184 Sum_probs=59.5
Q ss_pred EEecCCc-cceecCccccCCCCCCEEecCC-CcccccccccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeec
Q 044579 714 ELNLCDT-AIEEVPSSVECLTNLKELYLSR-CSTLNRLSTSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVL 791 (1103)
Q Consensus 714 ~L~L~~~-~i~~lp~~~~~l~~L~~L~L~~-~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L 791 (1103)
.++++++ .++.+|. +..+++|+.|+|++ |.+.+..+..|.+|++|+.|+|++|..... .|..|.+|++|+.|+|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~---~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV---APDAFHFTPRLSRLNL 87 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEE---CTTGGGSCSCCCEEEC
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCcccee---CHHHhcCCcCCCEEeC
Confidence 3456665 6777777 77777777777775 665555556677777777777776532221 3344556666666666
Q ss_pred cCCCCCCCCCCCcccCCCCCCCEEeCCCCCcc
Q 044579 792 VGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFE 823 (1103)
Q Consensus 792 ~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~ 823 (1103)
++|.+. .+| +..+..++ |+.|+|.+|.+.
T Consensus 88 ~~N~l~-~~~-~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 88 SFNALE-SLS-WKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CSSCCS-CCC-STTTCSCC-CCEEECCSSCCC
T ss_pred CCCccc-eeC-HHHcccCC-ceEEEeeCCCcc
Confidence 665543 333 12223233 566666655554
No 170
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.56 E-value=6.9e-07 Score=101.95 Aligned_cols=197 Identities=13% Similarity=0.100 Sum_probs=114.1
Q ss_pred CCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHHH
Q 044579 178 STDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRDE 257 (1103)
Q Consensus 178 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ 257 (1103)
|....+++|++..++.+...+..+. ..+.+.|+|++|+||||+|+.+++.+....... ....+.......
T Consensus 12 p~~~~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~---------~~~~~~~~~~~~ 81 (373)
T 1jr3_A 12 PQTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT---------ATPCGVCDNCRE 81 (373)
T ss_dssp CCSTTTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC---------SSCCSSSHHHHH
T ss_pred CCchhhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC---------CCCCcccHHHHH
Confidence 3445679999999999999886432 234788999999999999999998764332100 000000000011
Q ss_pred HHHhhhCCC-----CccccccchHHHHHhh-----cCCceEEEEeCCCC-CHhHHHHHhCCCCccCCCcEEEEEeCchhh
Q 044579 258 VISQVLGEN-----LKIGTLIVPQNIKKRL-----QRVKVLIVLDDVND-EFTQLESLAGGVDRFSPGSRIVITTRDKQV 326 (1103)
Q Consensus 258 ll~~l~~~~-----~~~~~~~~~~~l~~~L-----~~k~~LlVLDdv~~-~~~~l~~l~~~~~~~~~gs~IIiTTR~~~v 326 (1103)
+.......- ...........+.+.+ .+++.++|+||++. +....+.+...+.....+..+|++|....-
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 161 (373)
T 1jr3_A 82 IEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 (373)
T ss_dssp HHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGG
T ss_pred HhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 111000000 0000111122233322 34578999999963 233445554443334456777777764432
Q ss_pred -Hhh-cCcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhHHHHHH
Q 044579 327 -LDK-CGVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLALEVLG 386 (1103)
Q Consensus 327 -~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~lg 386 (1103)
... ......+++.+++.++..+++...+-..+... ..+....+++.++|.|..+..+.
T Consensus 162 l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~--~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 162 LPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH--EPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp SCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCB--CHHHHHHHHHHSSSCHHHHHHHH
T ss_pred CcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHCCCCHHHHHHHH
Confidence 111 12346889999999999999987764332221 13556789999999998776554
No 171
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.53 E-value=1.8e-07 Score=105.76 Aligned_cols=105 Identities=25% Similarity=0.207 Sum_probs=83.3
Q ss_pred CEEecCCCcccccccccccCCCCCcEEeecC-CCCCCccccCC-ccccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCC
Q 044579 736 KELYLSRCSTLNRLSTSICKLKSLHELILSD-CLSLETITELP-SSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQ 813 (1103)
Q Consensus 736 ~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~-~~~l~~i~~lp-~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~ 813 (1103)
..+++++++.+..+|. +..+++|+.|+|++ |.. . .+| ..+.+|++|+.|+|++|.+.+.. +..|..+++|+
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l-~---~~~~~~~~~l~~L~~L~l~~N~l~~~~--~~~~~~l~~L~ 83 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHL-Q---HLELRDLRGLGELRNLTIVKSGLRFVA--PDAFHFTPRLS 83 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSC-C---EECGGGSCSCCCCSEEECCSSCCCEEC--TTGGGSCSCCC
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCC-C---CcChhHhccccCCCEEECCCCccceeC--HHHhcCCcCCC
Confidence 4568887734566888 99999999999996 542 2 345 57899999999999999866544 45678899999
Q ss_pred EEeCCCCCccccCccccCCCCCCEEeccCCcCCc
Q 044579 814 WLDLSGNNFESLPSSIKQLSQLRKLDLSNCNMLL 847 (1103)
Q Consensus 814 ~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~n~~l~ 847 (1103)
.|+|++|+|+.+|..+....+|+.|+|.+|++.-
T Consensus 84 ~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 84 RLNLSFNALESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp EEECCSSCCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred EEeCCCCccceeCHHHcccCCceEEEeeCCCccC
Confidence 9999999999998766544459999999998653
No 172
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.53 E-value=2.9e-08 Score=111.81 Aligned_cols=116 Identities=17% Similarity=0.209 Sum_probs=71.7
Q ss_pred CCCCCEEecCCCccccccccccc--CCCCCcEEeecCCCCC--Cc--cccCCccc--cCCCCCCeeeccCCCCCCCCCC-
Q 044579 732 LTNLKELYLSRCSTLNRLSTSIC--KLKSLHELILSDCLSL--ET--ITELPSSF--ANLEGLEKLVLVGCSKLNKLPH- 802 (1103)
Q Consensus 732 l~~L~~L~L~~~~~~~~lp~~l~--~l~~L~~L~L~~~~~l--~~--i~~lp~~~--~~l~~L~~L~L~~~~~~~~lp~- 802 (1103)
+++|++|+|..|.+.......++ .+++|+.|+|+.+... .. +..+...+ ..+++|+.|.|.+|.+....+.
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~ 271 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM 271 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence 67788888877765443333343 6788888887532110 00 11121222 3578899999988876532210
Q ss_pred CcccCCCCCCCEEeCCCCCccc-----cCccccCCCCCCEEeccCCcCCc
Q 044579 803 SIDFCCLSSLQWLDLSGNNFES-----LPSSIKQLSQLRKLDLSNCNMLL 847 (1103)
Q Consensus 803 ~~~~~~l~~L~~L~Ls~n~l~~-----lp~~i~~l~~L~~L~L~~n~~l~ 847 (1103)
......+++|++|+|+.|.++. ++..+..+++|+.|+|++|.+..
T Consensus 272 la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 272 FLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp HHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred HHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 0111347889999999888874 55566778899999998887543
No 173
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.52 E-value=9.2e-09 Score=116.89 Aligned_cols=138 Identities=15% Similarity=0.109 Sum_probs=78.4
Q ss_pred CccEEecCCcccee--cCccccCCCCCCEEecCCCcccccccccc-----cCCCCCcEEeecCCCCCCc-cccCCccccC
Q 044579 711 KITELNLCDTAIEE--VPSSVECLTNLKELYLSRCSTLNRLSTSI-----CKLKSLHELILSDCLSLET-ITELPSSFAN 782 (1103)
Q Consensus 711 ~L~~L~L~~~~i~~--lp~~~~~l~~L~~L~L~~~~~~~~lp~~l-----~~l~~L~~L~L~~~~~l~~-i~~lp~~~~~ 782 (1103)
+|++|+|++|.+.. +......+++|+.|+|++|.+.......+ ...++|++|+|++|..... ...++..+..
T Consensus 102 ~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~ 181 (372)
T 3un9_A 102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAG 181 (372)
T ss_dssp CEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHT
T ss_pred CceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhc
Confidence 45555666555542 11222334567777777776544332222 2356677777777642211 1123444566
Q ss_pred CCCCCeeeccCCCCCCCCC--CCcccCCCCCCCEEeCCCCCccc-----cCccccCCCCCCEEeccCCcCCcc
Q 044579 783 LEGLEKLVLVGCSKLNKLP--HSIDFCCLSSLQWLDLSGNNFES-----LPSSIKQLSQLRKLDLSNCNMLLS 848 (1103)
Q Consensus 783 l~~L~~L~L~~~~~~~~lp--~~~~~~~l~~L~~L~Ls~n~l~~-----lp~~i~~l~~L~~L~L~~n~~l~~ 848 (1103)
+++|++|+|++|.+...-. -...+...++|++|+|++|.++. ++..+...++|++|+|++|++...
T Consensus 182 ~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 182 NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 6777777777776432100 01223445678888888888763 445556677888888888876544
No 174
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.49 E-value=8.6e-06 Score=91.38 Aligned_cols=254 Identities=11% Similarity=0.146 Sum_probs=143.9
Q ss_pred CCCCCCccccchhHHHHHHhhccc---CCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHH
Q 044579 178 STDLDGLVGLNTRIEEMKSLLCLE---SHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHV 254 (1103)
Q Consensus 178 ~~~~~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~ 254 (1103)
|...++++|++..++++..++... ......|.|+|++|+|||++|+++++.....| +.+. . ........
T Consensus 25 p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~---~~~~-~---~~~~~~~~- 96 (338)
T 3pfi_A 25 PSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANI---KTTA-A---PMIEKSGD- 96 (338)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCE---EEEE-G---GGCCSHHH-
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe---EEec-c---hhccchhH-
Confidence 345678999999999998888642 33345689999999999999999988764443 1222 1 00001000
Q ss_pred HHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCCC-HhHHHHHhCCCCc------------------cCCCc
Q 044579 255 RDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVNDE-FTQLESLAGGVDR------------------FSPGS 315 (1103)
Q Consensus 255 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~-~~~l~~l~~~~~~------------------~~~gs 315 (1103)
... .+.. ..+..+|+||+++.- ......+...+.. ..++.
T Consensus 97 ~~~-------------------~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (338)
T 3pfi_A 97 LAA-------------------ILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKF 155 (338)
T ss_dssp HHH-------------------HHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCC
T ss_pred HHH-------------------HHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCe
Confidence 001 1111 235678999999732 2222222211110 01235
Q ss_pred EEEEEeCchhhH-hh--cCcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhHHHHHHhhc---
Q 044579 316 RIVITTRDKQVL-DK--CGVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLALEVLGSSL--- 389 (1103)
Q Consensus 316 ~IIiTTR~~~v~-~~--~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~lg~~L--- 389 (1103)
++|.||...... .. ......+.+++++.++..+++...+-..... -..+....+++.+.|+|-.+..+...+
T Consensus 156 ~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~ 233 (338)
T 3pfi_A 156 TLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKT--CEEKAALEIAKRSRSTPRIALRLLKRVRDF 233 (338)
T ss_dssp EEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCE--ECHHHHHHHHHTTTTCHHHHHHHHHHHHHH
T ss_pred EEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 666666543221 11 1334689999999999999998876432211 123566778888999996554443321
Q ss_pred ---CC---CCHHHHHHHHHHhhhcCCcchhhHHHhhhcCCCHHHHHHHhhhhccCCCC--CHHHHHHHhcC-----CCch
Q 044579 390 ---YQ---KSKQQWKVKLQNLKLISEPNIYNVLKISYDDLNPEEKKIFLDIACFFKGE--DADFVTRIQDD-----PTSL 456 (1103)
Q Consensus 390 ---~~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~--~~~~~~~~~~~-----~~~l 456 (1103)
.+ .+.+.....+.. +..+...++..+++.+..++-. .+. ....+...++. ...+
T Consensus 234 a~~~~~~~i~~~~~~~~~~~------------~~~~~~~l~~~e~~~l~~l~~~-~~~~~~~~~~a~~lg~~~~tl~~~l 300 (338)
T 3pfi_A 234 ADVNDEEIITEKRANEALNS------------LGVNELGFDAMDLRYLELLTAA-KQKPIGLASIAAALSEDENTIEDVI 300 (338)
T ss_dssp HHHTTCSEECHHHHHHHHHH------------HTCCTTCCCHHHHHHHHHHHHS-CSCCBCHHHHHHHTTCCHHHHHHTT
T ss_pred HHhhcCCccCHHHHHHHHHH------------hCCcccCCCHHHHHHHHHHHHh-cCCCchHHHHHHHhCCCHHHHHHHH
Confidence 11 122222222221 2334455666667777766655 333 35555555544 3344
Q ss_pred H-HHhhccCeeEcCCCeEEe
Q 044579 457 D-NIVDKSLITISDENRLQM 475 (1103)
Q Consensus 457 ~-~L~~~sLi~~~~~~~~~m 475 (1103)
+ .|++.++|.....++..-
T Consensus 301 ~~~l~~~gli~~~~~g~~~t 320 (338)
T 3pfi_A 301 EPYLLANGYIERTAKGRIAS 320 (338)
T ss_dssp HHHHHHTTSEEEETTEEEEC
T ss_pred hHHHHHcCceecCCCccccc
Confidence 4 788999998775555443
No 175
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.46 E-value=6e-06 Score=94.82 Aligned_cols=285 Identities=15% Similarity=0.131 Sum_probs=165.7
Q ss_pred ceeechHhhhcCcccceEEEecCCCCCccccCcceecCCCcccCCCceEEEEEcCCCCCCCCCc-c-ccccccccccccc
Q 044579 529 DIHLSSQAFANMSNLRLLKFYMPERGGVPIMSSKVHLDQGLEDLPEKLRYLHWHGYPLKTLPFD-F-ELENLIELRLPYS 606 (1103)
Q Consensus 529 ~~~~~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n 606 (1103)
...+...+|.++++|+.+++..+ ...+....+.-..+|+.+.+..+ ++.++.. | ... +....+. +
T Consensus 82 i~~I~~~aF~~c~~L~~i~lp~~----------l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~-~~~~~~~-~ 148 (394)
T 4fs7_A 82 VREIGEFAFENCSKLEIINIPDS----------VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCD-FKEITIP-E 148 (394)
T ss_dssp CCEECTTTTTTCTTCCEECCCTT----------CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCC-CSEEECC-T
T ss_pred ccCcchhHhhCCCCCcEEEeCCC----------ceEccchhhcccccchhhcccCc-eeeecceeeeccc-ccccccC-c
Confidence 56778889999999999998543 12233322222224444333221 2222211 1 111 1111111 1
Q ss_pred cccccc-cccccCCcceEecCCCCCCCccCCCCCCCCCccEEEecCCCCCCccc-ccccCCCcccEEEccCCCCCcccCC
Q 044579 607 KVEQIW-EGKKEASKLKSIDLCHSQHLIRMPDLSEIPNLERTNFFNCTNLVLVP-SSIQNFNNLSMLCFRGCESLRSFPR 684 (1103)
Q Consensus 607 ~i~~l~-~~~~~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~~~~l~~~~-~~i~~l~~L~~L~L~~~~~l~~lp~ 684 (1103)
.+..+. ..+.++.+|+.+.+.++.....--.|.++++|+.+.+..+ +..++ ..+.++..|+.+.+..+ ...+..
T Consensus 149 ~~~~i~~~aF~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~--~~~i~~ 224 (394)
T 4fs7_A 149 GVTVIGDEAFATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNS--LYYLGD 224 (394)
T ss_dssp TCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECT
T ss_pred cccccchhhhcccCCCcEEecCCccceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCC--ceEeeh
Confidence 122222 3466777888888766532211223777778887777553 33332 35666677776665542 222222
Q ss_pred C-CCCCCCcEEEccCCcCCCcCC----CcCCCccEEecCCccceecCccccCCCCCCEEecCCCcccccccccccCCCCC
Q 044579 685 D-IHFVSPVTIDFSFCVNLTEFP----KISGKITELNLCDTAIEEVPSSVECLTNLKELYLSRCSTLNRLSTSICKLKSL 759 (1103)
Q Consensus 685 ~-~~l~~L~~L~l~~c~~l~~~~----~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L 759 (1103)
. ....+|+.+.+... +..+. ....+|+.+.+..+...--...+..+..|+.+.+.... .....+..+.+|
T Consensus 225 ~~~~~~~l~~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L 299 (394)
T 4fs7_A 225 FALSKTGVKNIIIPDS--FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSL 299 (394)
T ss_dssp TTTTTCCCCEEEECTT--CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTC
T ss_pred hhcccCCCceEEECCC--ceecccccccccccceeEEcCCCcceeeccccccccccceeccCcee---eccccccccccc
Confidence 2 24456666666432 22221 22345777777665444334467788888888876643 222457788999
Q ss_pred cEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCccccC-ccccCCCCCCEE
Q 044579 760 HELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESLP-SSIKQLSQLRKL 838 (1103)
Q Consensus 760 ~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~lp-~~i~~l~~L~~L 838 (1103)
+.+.+..+ +..++ ...+.++.+|+.++|.++ +..++ ..+|.++.+|+.++|..+ ++.++ ..+.++++|+.+
T Consensus 300 ~~i~l~~~--i~~I~--~~aF~~c~~L~~i~lp~~--v~~I~-~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i 371 (394)
T 4fs7_A 300 TEVKLLDS--VKFIG--EEAFESCTSLVSIDLPYL--VEEIG-KRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKV 371 (394)
T ss_dssp CEEEECTT--CCEEC--TTTTTTCTTCCEECCCTT--CCEEC-TTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEE
T ss_pred cccccccc--cceec--hhhhcCCCCCCEEEeCCc--ccEEh-HHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEE
Confidence 99999763 33321 345788899999999653 44454 456888999999999776 77775 467889999999
Q ss_pred eccCC
Q 044579 839 DLSNC 843 (1103)
Q Consensus 839 ~L~~n 843 (1103)
+|..+
T Consensus 372 ~lp~~ 376 (394)
T 4fs7_A 372 ELPKR 376 (394)
T ss_dssp EEEGG
T ss_pred EECCC
Confidence 98654
No 176
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.46 E-value=3.3e-07 Score=97.40 Aligned_cols=177 Identities=13% Similarity=0.167 Sum_probs=101.0
Q ss_pred CCCCCccccc---hhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHH
Q 044579 179 TDLDGLVGLN---TRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVR 255 (1103)
Q Consensus 179 ~~~~~~vGr~---~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~ 255 (1103)
...++|+|.+ ..++.+..+...+ ..+.+.|+|++|+||||+|+.+++..........++. ..+.... .
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~-~~~~~~~--~---- 95 (242)
T 3bos_A 25 ETFTSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIP-LGIHASI--S---- 95 (242)
T ss_dssp CSTTTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE-GGGGGGS--C----
T ss_pred CChhhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-HHHHHHH--H----
Confidence 3456788743 4455555555432 4568899999999999999999998765544455554 2111100 0
Q ss_pred HHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCCC-HhH--HHHHhCCCCcc-CCC-cEEEEEeCchh-----
Q 044579 256 DEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVNDE-FTQ--LESLAGGVDRF-SPG-SRIVITTRDKQ----- 325 (1103)
Q Consensus 256 ~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~-~~~--l~~l~~~~~~~-~~g-s~IIiTTR~~~----- 325 (1103)
. ..+ +.+ .++.+||+||++.- ... .+.+...+... ..+ .++|+||+...
T Consensus 96 ----~---------------~~~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~ 154 (242)
T 3bos_A 96 ----T---------------ALL-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGF 154 (242)
T ss_dssp ----G---------------GGG-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTC
T ss_pred ----H---------------HHH-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHH
Confidence 0 000 111 34678999999621 111 22222211111 122 25888876432
Q ss_pred ----hHhhcCcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhHHHHHHh
Q 044579 326 ----VLDKCGVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLALEVLGS 387 (1103)
Q Consensus 326 ----v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~lg~ 387 (1103)
+...+.....+++++++.++..+++...+....... ..+....+++.++|.+-.+..+..
T Consensus 155 ~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 155 VLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQL--PEDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp CCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCC--CHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHccCCHHHHHHHHH
Confidence 111112226899999999999999988764322221 235667888899998876655443
No 177
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.44 E-value=1.8e-06 Score=88.00 Aligned_cols=50 Identities=24% Similarity=0.310 Sum_probs=41.7
Q ss_pred CCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhc
Q 044579 180 DLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISR 231 (1103)
Q Consensus 180 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (1103)
..+.++||++.++++.+.+... ..+.+.|+|++|+|||++|+.+++.+..
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 4567999999999999988642 3456889999999999999999987643
No 178
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.43 E-value=2.3e-06 Score=96.52 Aligned_cols=203 Identities=14% Similarity=0.167 Sum_probs=112.2
Q ss_pred hHHHHHHHHHHHHHhcccCCCCCCCCCccccchhHHHHHHhhcc----------cCCCeEEEEEeecCCChhHHHHHHHH
Q 044579 157 DAELVEKIVEDISKKLEDMSESTDLDGLVGLNTRIEEMKSLLCL----------ESHDVRIVGIWGMGGIGKTTIASVVF 226 (1103)
Q Consensus 157 e~~~i~~iv~~i~~~l~~~~~~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~ 226 (1103)
+..+++.|...+..+ .++...++++|.+..+++|.+.+.. .....+.|.|+|++|+|||++|++++
T Consensus 63 ~~~~~~~i~~~i~~~----~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia 138 (357)
T 3d8b_A 63 EPKMIELIMNEIMDH----GPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIA 138 (357)
T ss_dssp CHHHHHHHHHHTBCC----SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHH
T ss_pred ChHHHHHHHhhcccC----CCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHH
Confidence 455566555555333 3344557799999999999887642 11235678999999999999999999
Q ss_pred HHHhccCCceEEEEechhhhcccChHHHHHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCCCH--------
Q 044579 227 HQISRHFQGKCFMANVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVNDEF-------- 298 (1103)
Q Consensus 227 ~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~-------- 298 (1103)
+.....| +..+..+...... .. ....+. ..+...-..++.+|+||+++ ..
T Consensus 139 ~~~~~~~----~~i~~~~l~~~~~-g~-~~~~~~---------------~~~~~a~~~~~~vl~iDEid-~l~~~~~~~~ 196 (357)
T 3d8b_A 139 SQSGATF----FSISASSLTSKWV-GE-GEKMVR---------------ALFAVARCQQPAVIFIDEID-SLLSQRGDGE 196 (357)
T ss_dssp HHTTCEE----EEEEGGGGCCSST-TH-HHHHHH---------------HHHHHHHHTCSEEEEEETHH-HHTBC-----
T ss_pred HHcCCeE----EEEehHHhhcccc-ch-HHHHHH---------------HHHHHHHhcCCeEEEEeCch-hhhccCCCCc
Confidence 8763322 2222221111100 00 000000 01112223567899999995 21
Q ss_pred -----hHHHH----HhCCCCccCCCcEEEEEeCchhhHh-h--cCcceEEEccCCChhHHHHHHHHhhhccCCCChhHHH
Q 044579 299 -----TQLES----LAGGVDRFSPGSRIVITTRDKQVLD-K--CGVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLE 366 (1103)
Q Consensus 299 -----~~l~~----l~~~~~~~~~gs~IIiTTR~~~v~~-~--~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~ 366 (1103)
..+.. +.+.......+..||.||.....+. . -.....+.++..+.++..+++...+-...... ..+
T Consensus 197 ~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l--~~~ 274 (357)
T 3d8b_A 197 HESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCL--SEE 274 (357)
T ss_dssp -CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCC--CHH
T ss_pred chHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCc--cHH
Confidence 11122 2221111223456666775442211 1 13446788999999999999887763322211 124
Q ss_pred HHHHHHHHhCC-ChhHHHHHHh
Q 044579 367 LSKEIVGYAKG-NPLALEVLGS 387 (1103)
Q Consensus 367 ~~~~i~~~~~G-~PLal~~lg~ 387 (1103)
....+++.+.| .+-.|..+..
T Consensus 275 ~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 275 EIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHH
Confidence 56778888888 5556666554
No 179
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.42 E-value=1.4e-06 Score=95.05 Aligned_cols=163 Identities=11% Similarity=0.073 Sum_probs=97.0
Q ss_pred CccccchhHHHHHHhhcc--cCCCeEEEEEeecCCChhHHHHHHHHHHHhccCC-------ceEEEEechhhhcccChHH
Q 044579 183 GLVGLNTRIEEMKSLLCL--ESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQ-------GKCFMANVREKANKMGVIH 253 (1103)
Q Consensus 183 ~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~-------~~~~~~~~~~~~~~~~~~~ 253 (1103)
.+.||+++++++...|.. .......+.|+|++|.|||++|+.+++++..... ..+.+.+ ....+...
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc----~~~~t~~~ 96 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDA----LELAGMDA 96 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEET----TCCC--HH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEec----cccCCHHH
Confidence 378999999999877762 2345678899999999999999999998754221 1233431 22334456
Q ss_pred HHHHHHHhhhCCCCccccccchHHHHH---hh---cCCceEEEEeCCCCC--HhHHHHHhCCCCcc-CCCc--EEEEEeC
Q 044579 254 VRDEVISQVLGENLKIGTLIVPQNIKK---RL---QRVKVLIVLDDVNDE--FTQLESLAGGVDRF-SPGS--RIVITTR 322 (1103)
Q Consensus 254 ~~~~ll~~l~~~~~~~~~~~~~~~l~~---~L---~~k~~LlVLDdv~~~--~~~l~~l~~~~~~~-~~gs--~IIiTTR 322 (1103)
+...++.++.+....... ....+.+ .+ .++++++|||+++.- .+.+..+.. |. ...+ .||.++.
T Consensus 97 ~~~~I~~~L~g~~~~~~~--~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~---~~~~~~s~~~vI~i~n 171 (318)
T 3te6_A 97 LYEKIWFAISKENLCGDI--SLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEK---WISSKNSKLSIICVGG 171 (318)
T ss_dssp HHHHHHHHHSCCC--CCC--CHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHH---HHHCSSCCEEEEEECC
T ss_pred HHHHHHHHhcCCCCCchH--HHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHh---cccccCCcEEEEEEec
Confidence 777788887665322111 1122222 22 456799999999731 222222221 11 1223 3333343
Q ss_pred chhh----H-----hhcCcceEEEccCCChhHHHHHHHHhhh
Q 044579 323 DKQV----L-----DKCGVSYIYKVKRLEHDNALELFCRKAI 355 (1103)
Q Consensus 323 ~~~v----~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 355 (1103)
..+. + ..++ ...+..++++.+|-.+++..++-
T Consensus 172 ~~d~~~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 172 HNVTIREQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp SSCCCHHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHH
T ss_pred CcccchhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHH
Confidence 3221 1 1222 25789999999999999988763
No 180
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.41 E-value=3e-06 Score=100.61 Aligned_cols=191 Identities=16% Similarity=0.236 Sum_probs=106.5
Q ss_pred CCCCCCCccccchhHHHHHHhhccc---------------CCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEe
Q 044579 177 ESTDLDGLVGLNTRIEEMKSLLCLE---------------SHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMAN 241 (1103)
Q Consensus 177 ~~~~~~~~vGr~~~~~~l~~~L~~~---------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~ 241 (1103)
.|....+++|++..++++..++... .+..+.+.|+|++|+||||+|+++++... +. .+.+.
T Consensus 34 rP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~--~~-~i~in- 109 (516)
T 1sxj_A 34 APTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG--YD-ILEQN- 109 (516)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT--CE-EEEEC-
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC--CC-EEEEe-
Confidence 3445678999999999999888631 01346899999999999999999998862 21 12222
Q ss_pred chhhhcccChHHHHHHHHHhhhCCCCccccccchHHHHH--hhcCCceEEEEeCCCC----CH---hHHHHHhCCCCccC
Q 044579 242 VREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKK--RLQRVKVLIVLDDVND----EF---TQLESLAGGVDRFS 312 (1103)
Q Consensus 242 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~--~L~~k~~LlVLDdv~~----~~---~~l~~l~~~~~~~~ 312 (1103)
. +.... .......+........ ... ......+ ...+++.+||+|+++. .. ..+..+...
T Consensus 110 ~---s~~~~-~~~~~~~i~~~~~~~~-~~~--~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~----- 177 (516)
T 1sxj_A 110 A---SDVRS-KTLLNAGVKNALDNMS-VVG--YFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK----- 177 (516)
T ss_dssp T---TSCCC-HHHHHHTGGGGTTBCC-STT--TTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH-----
T ss_pred C---CCcch-HHHHHHHHHHHhcccc-HHH--HHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh-----
Confidence 1 11111 1222222222211100 000 0000000 1235688999999962 11 222222221
Q ss_pred CCcEEEEEeCchh---hHhhcCcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChh-HHHHH
Q 044579 313 PGSRIVITTRDKQ---VLDKCGVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPL-ALEVL 385 (1103)
Q Consensus 313 ~gs~IIiTTR~~~---v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~l 385 (1103)
.+..||+++.+.. +.........+++++++.++..+.+...+........ .+....|++.++|.+- ++..+
T Consensus 178 ~~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~--~~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 178 TSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD--PNVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp CSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC--TTHHHHHHHHTTTCHHHHHHHH
T ss_pred cCCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCcHHHHHHHH
Confidence 2344666555432 2222234568899999999999999887754332211 1346788889999554 44444
No 181
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.38 E-value=1.8e-08 Score=114.51 Aligned_cols=93 Identities=17% Similarity=0.062 Sum_probs=53.5
Q ss_pred CCCCCEEecCCCcccc----cccccccCCCCCcEEeecCCCCCCc-cccCCccccCCCCCCeeeccCCCCCCCCCC--Cc
Q 044579 732 LTNLKELYLSRCSTLN----RLSTSICKLKSLHELILSDCLSLET-ITELPSSFANLEGLEKLVLVGCSKLNKLPH--SI 804 (1103)
Q Consensus 732 l~~L~~L~L~~~~~~~----~lp~~l~~l~~L~~L~L~~~~~l~~-i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~--~~ 804 (1103)
.++|+.|+|++|.+.. .++..+..+++|++|+|++|..... ...++..+...++|+.|+|++|.+...-.. ..
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~ 233 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR 233 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence 4566667776666533 2344445666777777777642211 112344556667788888877765431100 11
Q ss_pred ccCCCCCCCEEeCCCCCccc
Q 044579 805 DFCCLSSLQWLDLSGNNFES 824 (1103)
Q Consensus 805 ~~~~l~~L~~L~Ls~n~l~~ 824 (1103)
.+...++|++|+|++|.|+.
T Consensus 234 ~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 234 AAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHCSSCCEEECTTSSCCH
T ss_pred HHHhCCCCCEEeccCCCCCH
Confidence 22345788888888888873
No 182
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.36 E-value=1.3e-06 Score=95.48 Aligned_cols=183 Identities=18% Similarity=0.266 Sum_probs=103.0
Q ss_pred CCCCCCccccchhHHHHHHhhccc-----------CCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhh
Q 044579 178 STDLDGLVGLNTRIEEMKSLLCLE-----------SHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKA 246 (1103)
Q Consensus 178 ~~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~ 246 (1103)
....++++|++..+++|.+.+... ....+.+.|+|++|+|||++|+++++.....| ...+..+..
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~----~~v~~~~~~ 88 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATF----IRVVGSELV 88 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEE----EEEEGGGGC
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE----EEEehHHHH
Confidence 344578999999999998877421 13345689999999999999999998764432 111111111
Q ss_pred cccChHHHHHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCCCH----------------hHHHHHhCCCC-
Q 044579 247 NKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVNDEF----------------TQLESLAGGVD- 309 (1103)
Q Consensus 247 ~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~----------------~~l~~l~~~~~- 309 (1103)
... ... ....+ ...+......++.+|+||+++ .. ..+..+...+.
T Consensus 89 ~~~-~~~-~~~~~---------------~~~~~~~~~~~~~vl~iDEid-~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~ 150 (285)
T 3h4m_A 89 KKF-IGE-GASLV---------------KDIFKLAKEKAPSIIFIDEID-AIAAKRTDALTGGDREVQRTLMQLLAEMDG 150 (285)
T ss_dssp CCS-TTH-HHHHH---------------HHHHHHHHHTCSEEEEEETTH-HHHBCCSSSCCGGGGHHHHHHHHHHHHHHT
T ss_pred Hhc-cch-HHHHH---------------HHHHHHHHHcCCeEEEEECHH-HhcccCccccCCccHHHHHHHHHHHHHhhC
Confidence 100 000 00000 012222234557899999996 22 11222221111
Q ss_pred -ccCCCcEEEEEeCchhhHh-----hcCcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCC-ChhHH
Q 044579 310 -RFSPGSRIVITTRDKQVLD-----KCGVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKG-NPLAL 382 (1103)
Q Consensus 310 -~~~~gs~IIiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G-~PLal 382 (1103)
....+..||.||....... .......+.++.++.++..+++...+........ .....+++.+.| .|-.+
T Consensus 151 ~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~---~~~~~l~~~~~g~~~~~i 227 (285)
T 3h4m_A 151 FDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAED---VNLEEIAKMTEGCVGAEL 227 (285)
T ss_dssp TCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHHCTTCCHHHH
T ss_pred CCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCc---CCHHHHHHHcCCCCHHHH
Confidence 1134567888887553322 1134468999999999999999887643322211 113456666666 44444
Q ss_pred HHH
Q 044579 383 EVL 385 (1103)
Q Consensus 383 ~~l 385 (1103)
..+
T Consensus 228 ~~l 230 (285)
T 3h4m_A 228 KAI 230 (285)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 183
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.35 E-value=5.2e-05 Score=86.90 Aligned_cols=289 Identities=10% Similarity=0.127 Sum_probs=169.0
Q ss_pred ceeechHhhhcCc-ccceEEEecCCCCCccccCcceecCCCcccCCCceEEEEEcCCC---CCCCCCcc--ccccccccc
Q 044579 529 DIHLSSQAFANMS-NLRLLKFYMPERGGVPIMSSKVHLDQGLEDLPEKLRYLHWHGYP---LKTLPFDF--ELENLIELR 602 (1103)
Q Consensus 529 ~~~~~~~~f~~l~-~Lr~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~---l~~lp~~~--~l~~L~~L~ 602 (1103)
...+...+|.+++ .|+.+.+-.+ ...+.+.-+.-..+|+.+.+..+. ++.++... ...+|+.+.
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s----------vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~ 120 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT----------VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIP 120 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT----------CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCG
T ss_pred eeEcCHhhccCCCCcCEEEEECCC----------eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeec
Confidence 3456777888874 5888877432 223444333333478888887653 55565443 567788777
Q ss_pred ccccccccccc-ccccCCcceEecCCCCCCCccCCCCCCCCCccEEEecCCCCCCcccccccCCCcccEEEccCCCCCcc
Q 044579 603 LPYSKVEQIWE-GKKEASKLKSIDLCHSQHLIRMPDLSEIPNLERTNFFNCTNLVLVPSSIQNFNNLSMLCFRGCESLRS 681 (1103)
Q Consensus 603 L~~n~i~~l~~-~~~~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~~~~l~~ 681 (1103)
+..+ ++.+.. .+..+.+|+.+.+..+.....-..|..+.+|+.+.+..+ +..+........+|+.+.+... +..
T Consensus 121 ~~~~-~~~I~~~aF~~c~~L~~i~lp~~~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~~--~~~ 195 (394)
T 4gt6_A 121 ILDS-VTEIDSEAFHHCEELDTVTIPEGVTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPAK--VTR 195 (394)
T ss_dssp GGTT-CSEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECTT--CCE
T ss_pred cCCc-cceehhhhhhhhcccccccccceeeeecccceecccccccccccce--eeEeccccccccceeEEEECCc--ccc
Confidence 7654 555553 467788888888876532222223778888888888652 4444443333456777776542 222
Q ss_pred cCCCC--CCCCCcEEEccCCcCCCcCCCc-----------------CCCccEEecCCccceecC-ccccCCCCCCEEecC
Q 044579 682 FPRDI--HFVSPVTIDFSFCVNLTEFPKI-----------------SGKITELNLCDTAIEEVP-SSVECLTNLKELYLS 741 (1103)
Q Consensus 682 lp~~~--~l~~L~~L~l~~c~~l~~~~~~-----------------~~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~L~ 741 (1103)
+.... ...++......... ....... ...+..+.+. +.+..+. ..|.++.+|+.+.+.
T Consensus 196 i~~~af~~c~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp 273 (394)
T 4gt6_A 196 IGTNAFSECFALSTITSDSES-YPAIDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMP 273 (394)
T ss_dssp ECTTTTTTCTTCCEEEECCSS-SCBSSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECC
T ss_pred cccchhhhccccceecccccc-cccccceeecccccccccccccccccccceEEcC-CcceEcccceeeecccccEEecc
Confidence 22211 33444444332211 0000000 0011122221 1222332 246778889999887
Q ss_pred CCcccccccccccCCCCCcEEeecCCCCCCccccCC-ccccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCC
Q 044579 742 RCSTLNRLSTSICKLKSLHELILSDCLSLETITELP-SSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGN 820 (1103)
Q Consensus 742 ~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp-~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n 820 (1103)
++. ...-...|.++++|+.+.+... +.. ++ ..|.++.+|+.+.|..+ +..+. ..+|.++.+|+.+.|..
T Consensus 274 ~~~-~~I~~~aF~~c~~L~~i~l~~~--i~~---I~~~aF~~c~~L~~i~lp~~--v~~I~-~~aF~~C~~L~~i~ip~- 343 (394)
T 4gt6_A 274 DSV-VSIGTGAFMNCPALQDIEFSSR--ITE---LPESVFAGCISLKSIDIPEG--ITQIL-DDAFAGCEQLERIAIPS- 343 (394)
T ss_dssp TTC-CEECTTTTTTCTTCCEEECCTT--CCE---ECTTTTTTCTTCCEEECCTT--CCEEC-TTTTTTCTTCCEEEECT-
T ss_pred ccc-ceecCcccccccccccccCCCc--ccc---cCceeecCCCCcCEEEeCCc--ccEeh-HhHhhCCCCCCEEEECc-
Confidence 642 3333456778889999988642 223 33 35777889999998653 34443 45678889999999864
Q ss_pred CccccC-ccccCCCCCCEEeccCCc
Q 044579 821 NFESLP-SSIKQLSQLRKLDLSNCN 844 (1103)
Q Consensus 821 ~l~~lp-~~i~~l~~L~~L~L~~n~ 844 (1103)
.++.++ ..+.++++|+.+++.++.
T Consensus 344 sv~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 344 SVTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TCCBCCGGGGTTCTTCCEEEESSCH
T ss_pred ccCEEhHhHhhCCCCCCEEEECCce
Confidence 477775 457888999999988764
No 184
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.32 E-value=5.4e-06 Score=93.67 Aligned_cols=198 Identities=14% Similarity=0.193 Sum_probs=111.6
Q ss_pred CCCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhc--cCCceEEEEechhhhcccChHHH
Q 044579 177 ESTDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISR--HFQGKCFMANVREKANKMGVIHV 254 (1103)
Q Consensus 177 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~F~~~~~~~~~~~~~~~~~~~~~ 254 (1103)
.|.....++|++..++.+...+..+.. ..+.|+|++|+||||+|+.+++.+.. .+...+.-.+. +...+...+
T Consensus 32 ~p~~~~~i~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~---~~~~~~~~~ 106 (353)
T 1sxj_D 32 RPKNLDEVTAQDHAVTVLKKTLKSANL--PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNA---SDERGISIV 106 (353)
T ss_dssp CCSSTTTCCSCCTTHHHHHHHTTCTTC--CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECS---SSCCCHHHH
T ss_pred CCCCHHHhhCCHHHHHHHHHHHhcCCC--CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcc---ccccchHHH
Confidence 344567899999999999999875432 23889999999999999999987542 12222211111 111222221
Q ss_pred HHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCC-CHhHHHHHhCCCCccCCCcEEEEEeCchh-hHhhc-C
Q 044579 255 RDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVND-EFTQLESLAGGVDRFSPGSRIVITTRDKQ-VLDKC-G 331 (1103)
Q Consensus 255 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~-~~~~l~~l~~~~~~~~~gs~IIiTTR~~~-v~~~~-~ 331 (1103)
.+.+.......... . ........-..++-++++|+++. .....+.+...+.......++|++|.... +.... .
T Consensus 107 -~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~s 182 (353)
T 1sxj_D 107 -REKVKNFARLTVSK-P--SKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLAS 182 (353)
T ss_dssp -TTHHHHHHHSCCCC-C--CTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHH
T ss_pred -HHHHHHHhhhcccc-c--chhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhc
Confidence 11121111100000 0 00011111124567999999963 12233444333333345667777775443 21111 1
Q ss_pred cceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhHHHHH
Q 044579 332 VSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLALEVL 385 (1103)
Q Consensus 332 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l 385 (1103)
....+++.+++.++..+.+...+....... ..+....++++++|.|..+..+
T Consensus 183 R~~~i~~~~~~~~~~~~~l~~~~~~~~~~i--~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 183 QCSKFRFKALDASNAIDRLRFISEQENVKC--DDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp HSEEEECCCCCHHHHHHHHHHHHHTTTCCC--CHHHHHHHHHHTSSCHHHHHHH
T ss_pred cCceEEeCCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHcCCCHHHHHHH
Confidence 224789999999999999988764332221 1356788999999999764443
No 185
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.30 E-value=3e-06 Score=98.19 Aligned_cols=184 Identities=11% Similarity=0.162 Sum_probs=104.1
Q ss_pred CCCCcc-ccchhH--HHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCc--eEEEEechhhhcccChHHH
Q 044579 180 DLDGLV-GLNTRI--EEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQG--KCFMANVREKANKMGVIHV 254 (1103)
Q Consensus 180 ~~~~~v-Gr~~~~--~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~~~~~~~~~~~~~~~~~ 254 (1103)
..+.|| |..... ..+........ ....+.|+|.+|+||||||+++++.+...+.. .+++. . ..+
T Consensus 103 tfd~fv~g~~n~~a~~~~~~~a~~~~-~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~-~---------~~~ 171 (440)
T 2z4s_A 103 TFENFVVGPGNSFAYHAALEVAKHPG-RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-S---------EKF 171 (440)
T ss_dssp SGGGCCCCTTTHHHHHHHHHHHHSTT-SSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE-H---------HHH
T ss_pred ChhhcCCCCchHHHHHHHHHHHhCCC-CCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-H---------HHH
Confidence 345666 654443 22333332222 25679999999999999999999987666533 23333 1 112
Q ss_pred HHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCCCH---hHHHHHhCCCCc-cCCCcEEEEEeCchh-----
Q 044579 255 RDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVNDEF---TQLESLAGGVDR-FSPGSRIVITTRDKQ----- 325 (1103)
Q Consensus 255 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~---~~l~~l~~~~~~-~~~gs~IIiTTR~~~----- 325 (1103)
..++...+... ....+...++.++-+|++||++.-. ...+.+...+.. ...|..||+||....
T Consensus 172 ~~~~~~~~~~~--------~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~ 243 (440)
T 2z4s_A 172 LNDLVDSMKEG--------KLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSE 243 (440)
T ss_dssp HHHHHHHHHTT--------CHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSS
T ss_pred HHHHHHHHHcc--------cHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHH
Confidence 23333333221 1113444444467899999996211 222333222211 245778999987631
Q ss_pred ----hHhhcCcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhHHHH
Q 044579 326 ----VLDKCGVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLALEV 384 (1103)
Q Consensus 326 ----v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 384 (1103)
+...+.....+++++++.++..+++...+-......+ .+....|++.+.|.+-.+.-
T Consensus 244 l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~--~e~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 244 FQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELP--EEVLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp CCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCC--TTHHHHHHHHCCSCHHHHHH
T ss_pred HHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHhcCCCHHHHHH
Confidence 2222222356789999999999999887743222111 13456778888888865543
No 186
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.28 E-value=8.4e-06 Score=88.30 Aligned_cols=169 Identities=16% Similarity=0.141 Sum_probs=90.6
Q ss_pred CCccccchhHHHHHH-------hhc-ccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHH
Q 044579 182 DGLVGLNTRIEEMKS-------LLC-LESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIH 253 (1103)
Q Consensus 182 ~~~vGr~~~~~~l~~-------~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~ 253 (1103)
..++|....++++.. .+. ......+.+.|+|++|+|||++|+++++.....| +.+....... ......
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~---~~i~~~~~~~-g~~~~~ 108 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPF---IKICSPDKMI-GFSETA 108 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSE---EEEECGGGCT-TCCHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCE---EEEeCHHHhc-CCchHH
Confidence 457777776665544 221 1234567899999999999999999998754332 1222110000 000000
Q ss_pred HHHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCCCH------------hHHHHH---hCCCCccCCCcEEE
Q 044579 254 VRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVNDEF------------TQLESL---AGGVDRFSPGSRIV 318 (1103)
Q Consensus 254 ~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~------------~~l~~l---~~~~~~~~~gs~II 318 (1103)
.. .. ....+......++.+|+||+++ .. ..++.+ .......+....||
T Consensus 109 ~~-~~---------------~~~~~~~~~~~~~~vl~iDEid-~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii 171 (272)
T 1d2n_A 109 KC-QA---------------MKKIFDDAYKSQLSCVVVDDIE-RLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLII 171 (272)
T ss_dssp HH-HH---------------HHHHHHHHHTSSEEEEEECCHH-HHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEE
T ss_pred HH-HH---------------HHHHHHHHHhcCCcEEEEEChh-hhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEE
Confidence 00 00 0012222234568899999985 22 122333 32222223345577
Q ss_pred EEeCchhhHhhc----CcceEEEccCCCh-hHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCC
Q 044579 319 ITTRDKQVLDKC----GVSYIYKVKRLEH-DNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGN 378 (1103)
Q Consensus 319 iTTR~~~v~~~~----~~~~~~~l~~L~~-~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~ 378 (1103)
.||.....+... .....+.+++++. ++..+++.... .. . .+....+++.+.|.
T Consensus 172 ~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~---~~-~---~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 172 GTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG---NF-K---DKERTTIAQQVKGK 229 (272)
T ss_dssp EEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT---CS-C---HHHHHHHHHHHTTS
T ss_pred EecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC---CC-C---HHHHHHHHHHhcCC
Confidence 788777554331 2256789999988 55555554421 11 1 24567788888773
No 187
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.26 E-value=1.5e-05 Score=88.54 Aligned_cols=187 Identities=17% Similarity=0.166 Sum_probs=104.1
Q ss_pred CCCCCCCccccchhHHHHHHhhc----------ccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhh
Q 044579 177 ESTDLDGLVGLNTRIEEMKSLLC----------LESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKA 246 (1103)
Q Consensus 177 ~~~~~~~~vGr~~~~~~l~~~L~----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~ 246 (1103)
+...-.+++|.+..+++|.+.+. ......+-|.|+|++|+|||+||+++++.....| +..+..+.
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~----~~v~~~~l- 87 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF----FSVSSSDL- 87 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEE----EEEEHHHH-
T ss_pred CCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCE----EEEchHHH-
Confidence 33445778999999999888762 1122245789999999999999999998864433 22221111
Q ss_pred cccChHHHHHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCCCHh-------------HHHHHhCC---CCc
Q 044579 247 NKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVNDEFT-------------QLESLAGG---VDR 310 (1103)
Q Consensus 247 ~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~-------------~l~~l~~~---~~~ 310 (1103)
.....+. ........+...-..++.+|+||+++ ... ....+... ...
T Consensus 88 ------------~~~~~g~----~~~~~~~~f~~a~~~~~~vl~iDEid-~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 150 (322)
T 3eie_A 88 ------------VSKWMGE----SEKLVKQLFAMARENKPSIIFIDQVD-ALTGTRGEGESEASRRIKTELLVQMNGVGN 150 (322)
T ss_dssp ------------HTTTGGG----HHHHHHHHHHHHHHTSSEEEEEECGG-GGSCC------CCTHHHHHHHHHHHGGGGT
T ss_pred ------------hhcccch----HHHHHHHHHHHHHhcCCeEEEechhh-hhhccCCCCcchHHHHHHHHHHHHhccccc
Confidence 1111100 00000001222224567899999996 221 11222211 111
Q ss_pred cCCCcEEEEEeCchhhHhh---cCcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCC-ChhHHHHHH
Q 044579 311 FSPGSRIVITTRDKQVLDK---CGVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKG-NPLALEVLG 386 (1103)
Q Consensus 311 ~~~gs~IIiTTR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G-~PLal~~lg 386 (1103)
...+..||.||.....+.. -.....+.++..+.++..+++..++........ ......+++.+.| .+-.|..+.
T Consensus 151 ~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~--~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 151 DSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLT--KEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp SCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCC--HHHHHHHHHTTTTCCHHHHHHHH
T ss_pred cCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCC--HHHHHHHHHHcCCCCHHHHHHHH
Confidence 2345666767765432211 134467889999999999999887744322211 2345667777776 344455444
Q ss_pred h
Q 044579 387 S 387 (1103)
Q Consensus 387 ~ 387 (1103)
.
T Consensus 229 ~ 229 (322)
T 3eie_A 229 K 229 (322)
T ss_dssp H
T ss_pred H
Confidence 3
No 188
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.23 E-value=1.2e-05 Score=90.74 Aligned_cols=200 Identities=13% Similarity=0.151 Sum_probs=106.7
Q ss_pred CCCCCCccccchhHHHHHHhh-cccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEech-------------
Q 044579 178 STDLDGLVGLNTRIEEMKSLL-CLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVR------------- 243 (1103)
Q Consensus 178 ~~~~~~~vGr~~~~~~l~~~L-~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~------------- 243 (1103)
|...++++|.+..++.+..++ ..+.. .. +.|+|+.|+||||+|+.++..+...-.+.+.+....
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~~~~~~~-~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLSDQPRDL-PH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTTCTTCC-CC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CC
T ss_pred CCCHHHhcCCHHHHHHHHHHHhhCCCC-Ce-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeee
Confidence 444577999999999999888 53322 23 899999999999999999986533222222111000
Q ss_pred -------hh-hcccCh--HHHHHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCC-CHhHHHHHhCCCCccC
Q 044579 244 -------EK-ANKMGV--IHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVND-EFTQLESLAGGVDRFS 312 (1103)
Q Consensus 244 -------~~-~~~~~~--~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~-~~~~l~~l~~~~~~~~ 312 (1103)
.. ....+. ....++.+..+.... ...... .+ ..+.+++-++|+|+++. +....+.+...+....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~---~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 88 VSSPYHLEITPSDMGNNDRIVIQELLKEVAQME-QVDFQD---SK-DGLAHRYKCVIINEANSLTKDAQAALRRTMEKYS 162 (354)
T ss_dssp EECSSEEEECCC----CCHHHHHHHHHHHTTTT-C----------------CCEEEEEECTTSSCHHHHHHHHHHHHHST
T ss_pred ecccceEEecHhhcCCcchHHHHHHHHHHHHhc-cccccc---cc-cccCCCCeEEEEeCccccCHHHHHHHHHHHHhhc
Confidence 00 000000 001112222211100 000000 00 00234667999999973 1222333433333334
Q ss_pred CCcEEEEEeCchh-hHhhc-CcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhHHHHH
Q 044579 313 PGSRIVITTRDKQ-VLDKC-GVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLALEVL 385 (1103)
Q Consensus 313 ~gs~IIiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l 385 (1103)
++.++|++|.+.. +.... .....+++++++.++..+.+...+...+.... ..+....|++.++|.+..+..+
T Consensus 163 ~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~l~~i~~~~~G~~r~a~~~ 236 (354)
T 1sxj_E 163 KNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLE-TKDILKRIAQASNGNLRVSLLM 236 (354)
T ss_dssp TTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEEC-CSHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHcCCCHHHHHHH
Confidence 5778888887543 22211 23368999999999999999887743322111 0245678889999998654433
No 189
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.21 E-value=1.2e-05 Score=88.31 Aligned_cols=199 Identities=15% Similarity=0.135 Sum_probs=108.1
Q ss_pred HHHHHHHhcccCCCCCCCCCccccchhHHHHHHhhccc----------CCCeEEEEEeecCCChhHHHHHHHHHHHhccC
Q 044579 164 IVEDISKKLEDMSESTDLDGLVGLNTRIEEMKSLLCLE----------SHDVRIVGIWGMGGIGKTTIASVVFHQISRHF 233 (1103)
Q Consensus 164 iv~~i~~~l~~~~~~~~~~~~vGr~~~~~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 233 (1103)
+++.+...+..-.++....+++|.+..++.+.+.+... ....+.+.|+|++|+||||+|++++......|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~ 82 (297)
T 3b9p_A 3 LVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATF 82 (297)
T ss_dssp HHHHHHTTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe
Confidence 44455554443234445578999999999988776421 12246789999999999999999998764332
Q ss_pred CceEEEEechhhhcc-c-ChHHHHHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCCC------------Hh
Q 044579 234 QGKCFMANVREKANK-M-GVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVNDE------------FT 299 (1103)
Q Consensus 234 ~~~~~~~~~~~~~~~-~-~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~------------~~ 299 (1103)
+.+. ..+.... . ......+. .+......++.+|++|+++.- ..
T Consensus 83 ---~~i~-~~~l~~~~~~~~~~~~~~-------------------~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~ 139 (297)
T 3b9p_A 83 ---LNIS-AASLTSKYVGDGEKLVRA-------------------LFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRR 139 (297)
T ss_dssp ---EEEE-STTTSSSSCSCHHHHHHH-------------------HHHHHHHTCSEEEEEETGGGTSBCC-----CCSHH
T ss_pred ---EEee-HHHHhhcccchHHHHHHH-------------------HHHHHHHcCCcEEEeccHHHhccccccCcchHHHH
Confidence 1121 1111000 0 00000000 122222356789999999621 01
Q ss_pred HHHHHhCC---CCc--cCCCcEEEEEeCchhhHhh---cCcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHH
Q 044579 300 QLESLAGG---VDR--FSPGSRIVITTRDKQVLDK---CGVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEI 371 (1103)
Q Consensus 300 ~l~~l~~~---~~~--~~~gs~IIiTTR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i 371 (1103)
....+... ... .+.+..||.||.....+.. -.....+.++..+.++..+++...+-....... .+....+
T Consensus 140 ~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~--~~~~~~l 217 (297)
T 3b9p_A 140 LKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLD--TEALRRL 217 (297)
T ss_dssp HHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSC--HHHHHHH
T ss_pred HHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCC--HHHHHHH
Confidence 11112111 111 1234567777775432111 023457788888888888888776643322211 2456778
Q ss_pred HHHhCCChh-HHHHHHh
Q 044579 372 VGYAKGNPL-ALEVLGS 387 (1103)
Q Consensus 372 ~~~~~G~PL-al~~lg~ 387 (1103)
++.+.|.+- ++..+..
T Consensus 218 a~~~~g~~~~~l~~l~~ 234 (297)
T 3b9p_A 218 AKITDGYSGSDLTALAK 234 (297)
T ss_dssp HHHTTTCCHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHH
Confidence 888888775 5555543
No 190
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.21 E-value=2.3e-05 Score=88.10 Aligned_cols=185 Identities=17% Similarity=0.185 Sum_probs=102.6
Q ss_pred CCCCCCccccchhHHHHHHhhcc----------cCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhc
Q 044579 178 STDLDGLVGLNTRIEEMKSLLCL----------ESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKAN 247 (1103)
Q Consensus 178 ~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~ 247 (1103)
+..-.+++|.+..++.|.+.+.. .....+-|.|+|++|+|||+||+++++.....| +..+..+
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~----~~v~~~~--- 119 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF----FSVSSSD--- 119 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEE----EEEEHHH---
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEeeHHH---
Confidence 33456799999999998877631 112234688999999999999999999874332 2221111
Q ss_pred ccChHHHHHHHHHhhhCCCCccccccchH-HHHHhhcCCceEEEEeCCCCCHh-------------HHHHHhCCC---Cc
Q 044579 248 KMGVIHVRDEVISQVLGENLKIGTLIVPQ-NIKKRLQRVKVLIVLDDVNDEFT-------------QLESLAGGV---DR 310 (1103)
Q Consensus 248 ~~~~~~~~~~ll~~l~~~~~~~~~~~~~~-~l~~~L~~k~~LlVLDdv~~~~~-------------~l~~l~~~~---~~ 310 (1103)
+.....+.. . .... .+......++.+|+||+++ ... ....+...+ ..
T Consensus 120 ----------l~~~~~g~~----~-~~~~~~f~~a~~~~~~vl~iDEid-~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~ 183 (355)
T 2qp9_X 120 ----------LVSKWMGES----E-KLVKQLFAMARENKPSIIFIDQVD-ALTGTRGEGESEASRRIKTELLVQMNGVGN 183 (355)
T ss_dssp ----------HHSCC---C----H-HHHHHHHHHHHHTSSEEEEEECGG-GGTC------CTHHHHHHHHHHHHHHHCC-
T ss_pred ----------HhhhhcchH----H-HHHHHHHHHHHHcCCeEEEEechH-hhcccCCCCcchHHHHHHHHHHHHhhcccc
Confidence 111111100 0 0011 1222223568899999997 221 122222111 11
Q ss_pred cCCCcEEEEEeCchhhHh---hcCcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCC-ChhHHHHHH
Q 044579 311 FSPGSRIVITTRDKQVLD---KCGVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKG-NPLALEVLG 386 (1103)
Q Consensus 311 ~~~gs~IIiTTR~~~v~~---~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G-~PLal~~lg 386 (1103)
...+..||.||.....+. .-.....+.++..+.++..+++..++........ ......|++.+.| .+-.|..+.
T Consensus 184 ~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~--~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 184 DSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLT--KEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp --CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC--HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred cCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHcCCCCHHHHHHHH
Confidence 134556666776442211 1145577889999999999999887643322111 2345677788887 444555554
Q ss_pred h
Q 044579 387 S 387 (1103)
Q Consensus 387 ~ 387 (1103)
.
T Consensus 262 ~ 262 (355)
T 2qp9_X 262 K 262 (355)
T ss_dssp H
T ss_pred H
Confidence 3
No 191
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.21 E-value=1.9e-05 Score=89.70 Aligned_cols=202 Identities=12% Similarity=0.065 Sum_probs=105.1
Q ss_pred CCCccccchhHHHHHHh---hcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHHH
Q 044579 181 LDGLVGLNTRIEEMKSL---LCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRDE 257 (1103)
Q Consensus 181 ~~~~vGr~~~~~~l~~~---L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ 257 (1103)
.+.+||++..++.+..+ +..+....+.+.|+|++|+|||++|+++++........ +.+....-.+...+......+
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 121 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPF-TAIAGSEIFSLEMSKTEALTQ 121 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCE-EEEEGGGGSCSSSCHHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCc-ccccchhhhhcccchhHHHHH
Confidence 56899999987775444 33333334689999999999999999999987643321 112211111111222223333
Q ss_pred HHHhhhCCC---------------------C---cc--c---c-ccchH-HHHHh-----hcCC----ceEEEEeCCCCC
Q 044579 258 VISQVLGEN---------------------L---KI--G---T-LIVPQ-NIKKR-----LQRV----KVLIVLDDVNDE 297 (1103)
Q Consensus 258 ll~~l~~~~---------------------~---~~--~---~-~~~~~-~l~~~-----L~~k----~~LlVLDdv~~~ 297 (1103)
.+....+.. . .. . . ..... .+... ..++ +.+|++|+++.-
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l 201 (368)
T 3uk6_A 122 AFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHML 201 (368)
T ss_dssp HHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGS
T ss_pred HHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcccc
Confidence 332211100 0 00 0 0 00000 11111 1222 359999999732
Q ss_pred -HhHHHHHhCCCCccCCCcEEEEEeCc------------h-hhHhh-cCcceEEEccCCChhHHHHHHHHhhhccCCCCh
Q 044579 298 -FTQLESLAGGVDRFSPGSRIVITTRD------------K-QVLDK-CGVSYIYKVKRLEHDNALELFCRKAIRQNSRSQ 362 (1103)
Q Consensus 298 -~~~l~~l~~~~~~~~~gs~IIiTTR~------------~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~ 362 (1103)
.+....+...+..... ..++++|.. . .+... ......+.+++++.++..+++...+-......
T Consensus 202 ~~~~~~~L~~~le~~~~-~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~~~- 279 (368)
T 3uk6_A 202 DIESFSFLNRALESDMA-PVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDVEM- 279 (368)
T ss_dssp BHHHHHHHHHHTTCTTC-CEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTCCB-
T ss_pred ChHHHHHHHHHhhCcCC-CeeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcCCCC-
Confidence 2334444433333222 244444431 1 11111 12224579999999999999988774433221
Q ss_pred hHHHHHHHHHHHhC-CChhHHHHHH
Q 044579 363 DLLELSKEIVGYAK-GNPLALEVLG 386 (1103)
Q Consensus 363 ~~~~~~~~i~~~~~-G~PLal~~lg 386 (1103)
..+....+++++. |.|-.+..+.
T Consensus 280 -~~~~l~~l~~~~~~G~~r~~~~ll 303 (368)
T 3uk6_A 280 -SEDAYTVLTRIGLETSLRYAIQLI 303 (368)
T ss_dssp -CHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred -CHHHHHHHHHHhcCCCHHHHHHHH
Confidence 2356778888887 8886655443
No 192
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.21 E-value=1.6e-05 Score=85.49 Aligned_cols=182 Identities=15% Similarity=0.165 Sum_probs=98.4
Q ss_pred CCCccccchhHHHHHHhhcc----------cCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccC
Q 044579 181 LDGLVGLNTRIEEMKSLLCL----------ESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMG 250 (1103)
Q Consensus 181 ~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 250 (1103)
.++++|.+..++++.+++.. +....+.+.|+|++|+|||++|+++++.....| +.+. .........
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~~~-~~~~~~~~~ 80 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPF---LAMA-GAEFVEVIG 80 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCE---EEEE-TTTTSSSST
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCE---EEec-hHHHHhhcc
Confidence 45788998888887665431 112345688999999999999999998764432 2222 111111000
Q ss_pred hHHHHHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCCCH-----------------hHHHHHhCCCCc--c
Q 044579 251 VIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVNDEF-----------------TQLESLAGGVDR--F 311 (1103)
Q Consensus 251 ~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~-----------------~~l~~l~~~~~~--~ 311 (1103)
-. ....+ ...+.......+.+|++|+++ .. ..+..+...+.. .
T Consensus 81 ~~--~~~~~---------------~~~~~~a~~~~~~vl~iDeid-~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 142 (262)
T 2qz4_A 81 GL--GAARV---------------RSLFKEARARAPCIVYIDEID-AVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT 142 (262)
T ss_dssp TH--HHHHH---------------HHHHHHHHHTCSEEEEEECC--------------------CHHHHHHHHHHHTCCT
T ss_pred Ch--hHHHH---------------HHHHHHHHhcCCeEEEEeCcc-hhhccccccccCccchhHHHHHHHHHHHhhCcCC
Confidence 00 00000 012222223457899999997 32 112222221111 1
Q ss_pred CCCcEEEEEeCchhhHh-h----cCcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChh-HHHHH
Q 044579 312 SPGSRIVITTRDKQVLD-K----CGVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPL-ALEVL 385 (1103)
Q Consensus 312 ~~gs~IIiTTR~~~v~~-~----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~l 385 (1103)
..+..||.||.....+. . -.....+.++..+.++..+++...+....... ........+++.+.|.+- .|..+
T Consensus 143 ~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~-~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 143 TDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQ-SSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp TCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCB-THHHHHHHHHHTCTTCCHHHHHHH
T ss_pred CCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCc-chhhHHHHHHHHCCCCCHHHHHHH
Confidence 23556777776544221 1 13446888999999999999988764332222 222234667777777653 44433
No 193
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.21 E-value=5.3e-07 Score=101.41 Aligned_cols=138 Identities=15% Similarity=0.130 Sum_probs=74.8
Q ss_pred cccccccCCcceEecCCCCCCCccCCCCCCCCCccEEEecCCCCCCccccccc--CCCcccEEEccCCCC-------Ccc
Q 044579 611 IWEGKKEASKLKSIDLCHSQHLIRMPDLSEIPNLERTNFFNCTNLVLVPSSIQ--NFNNLSMLCFRGCES-------LRS 681 (1103)
Q Consensus 611 l~~~~~~l~~L~~L~L~~~~~~~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~--~l~~L~~L~L~~~~~-------l~~ 681 (1103)
+...+..+++|+.|+|++|... .++.+. +++|++|+|..|.........+. .+++|+.|+|+.+.. +..
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~ 241 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGKKP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV 241 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCSCB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecccc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence 3344556778888888776422 234443 77888888877654332222232 677888887753211 100
Q ss_pred cCCCCCCCCCcEEEccCCcCCCcCCCcCCCccEEecCCcccee-cCccc---cCCCCCCEEecCCCccccc----ccccc
Q 044579 682 FPRDIHFVSPVTIDFSFCVNLTEFPKISGKITELNLCDTAIEE-VPSSV---ECLTNLKELYLSRCSTLNR----LSTSI 753 (1103)
Q Consensus 682 lp~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~L~~~~i~~-lp~~~---~~l~~L~~L~L~~~~~~~~----lp~~l 753 (1103)
+...+. ...+++|+.|+|.+|.+.. .+..+ ..+++|++|+|+.|.+... ++..+
T Consensus 242 l~~~l~------------------~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L 303 (362)
T 2ra8_A 242 FRPLFS------------------KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHV 303 (362)
T ss_dssp TGGGSC------------------TTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTH
T ss_pred HHHHHh------------------cCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhc
Confidence 000000 0123455666665555441 11111 2467788888877765542 34445
Q ss_pred cCCCCCcEEeecCCC
Q 044579 754 CKLKSLHELILSDCL 768 (1103)
Q Consensus 754 ~~l~~L~~L~L~~~~ 768 (1103)
.++++|+.|+|++|.
T Consensus 304 ~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 304 DKIKHLKFINMKYNY 318 (362)
T ss_dssp HHHTTCSEEECCSBB
T ss_pred ccCCcceEEECCCCc
Confidence 567788888887764
No 194
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.18 E-value=6.6e-05 Score=86.06 Aligned_cols=290 Identities=13% Similarity=0.149 Sum_probs=159.4
Q ss_pred ceeechHhhhcCcccceEEEecCCCCCccccCcceecCCCcccCCCceEEEEEcCCCCCCCCCcc--ccccccccccccc
Q 044579 529 DIHLSSQAFANMSNLRLLKFYMPERGGVPIMSSKVHLDQGLEDLPEKLRYLHWHGYPLKTLPFDF--ELENLIELRLPYS 606 (1103)
Q Consensus 529 ~~~~~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~--~l~~L~~L~L~~n 606 (1103)
...+...+|.++++|+.+.+..+.-. ....+....+.-..+|+.+.+.. .++.++... ...+|+.+.++.+
T Consensus 75 vt~Ig~~AF~~C~~L~~i~~~~n~p~------~l~~Ig~~aF~~c~~L~~i~~~~-~~~~I~~~aF~~c~~L~~i~lp~~ 147 (394)
T 4gt6_A 75 VTEIGSNAFYNCTSLKRVTIQDNKPS------CVKKIGRQAFMFCSELTDIPILD-SVTEIDSEAFHHCEELDTVTIPEG 147 (394)
T ss_dssp CCEECTTTTTTCTTCCEEEEGGGCCC------CCCEECTTTTTTCTTCCBCGGGT-TCSEECTTTTTTCTTCCEEECCTT
T ss_pred eeEEhHHHhhCCccCceEeecCCCCC------eeeEechhhchhcccceeeccCC-ccceehhhhhhhhcccccccccce
Confidence 55678889999999999999765321 12233333333223454444332 244444332 5677888887643
Q ss_pred cccccc-cccccCCcceEecCCCCCCCccCC--CCCCCCCccEEEecCCCCCCcccccccCCCcccEEEccCCCCCcccC
Q 044579 607 KVEQIW-EGKKEASKLKSIDLCHSQHLIRMP--DLSEIPNLERTNFFNCTNLVLVPSSIQNFNNLSMLCFRGCESLRSFP 683 (1103)
Q Consensus 607 ~i~~l~-~~~~~l~~L~~L~L~~~~~~~~~p--~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp 683 (1103)
+..+. ..+..+.+|+.+.+..+- ..+. .|.. .+|+.+.+... ....-...+..+.+|......... .....
T Consensus 148 -~~~I~~~~F~~c~~L~~i~~~~~~--~~I~~~aF~~-~~l~~i~ip~~-~~~i~~~af~~c~~l~~~~~~~~~-~~~~~ 221 (394)
T 4gt6_A 148 -VTSVADGMFSYCYSLHTVTLPDSV--TAIEERAFTG-TALTQIHIPAK-VTRIGTNAFSECFALSTITSDSES-YPAID 221 (394)
T ss_dssp -CCEECTTTTTTCTTCCEEECCTTC--CEECTTTTTT-CCCSEEEECTT-CCEECTTTTTTCTTCCEEEECCSS-SCBSS
T ss_pred -eeeecccceeccccccccccccee--eEeccccccc-cceeEEEECCc-ccccccchhhhccccceecccccc-ccccc
Confidence 44444 346777888888887652 2333 2443 56777777542 112223345566666665544321 11111
Q ss_pred CCC---------------CCCCCcEEEccCCcCCCcCC----CcCCCccEEecCCccceecC-ccccCCCCCCEEecCCC
Q 044579 684 RDI---------------HFVSPVTIDFSFCVNLTEFP----KISGKITELNLCDTAIEEVP-SSVECLTNLKELYLSRC 743 (1103)
Q Consensus 684 ~~~---------------~l~~L~~L~l~~c~~l~~~~----~~~~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~ 743 (1103)
..+ ....+..+.+.. .+..+. ....+|+.+.+..+.. .+. ..+.++++|+.+.+..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~--~v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~- 297 (394)
T 4gt6_A 222 NVLYEKSANGDYALIRYPSQREDPAFKIPN--GVARIETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSS- 297 (394)
T ss_dssp SCEEEECTTSCEEEEECCTTCCCSEEECCT--TEEEECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECCT-
T ss_pred ceeecccccccccccccccccccceEEcCC--cceEcccceeeecccccEEecccccc-eecCcccccccccccccCCC-
Confidence 111 011111221110 111111 1123566676655433 333 3577889999999974
Q ss_pred cccccccccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCcc
Q 044579 744 STLNRLSTSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFE 823 (1103)
Q Consensus 744 ~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~ 823 (1103)
.+...-...|.++.+|+.+.|..+ ++.++ ...|.++.+|+.+.|..+ ...+. ..+|.++++|+.+++.++...
T Consensus 298 ~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~--~~aF~~C~~L~~i~ip~s--v~~I~-~~aF~~C~~L~~i~~~~~~~~ 370 (394)
T 4gt6_A 298 RITELPESVFAGCISLKSIDIPEG--ITQIL--DDAFAGCEQLERIAIPSS--VTKIP-ESAFSNCTALNNIEYSGSRSQ 370 (394)
T ss_dssp TCCEECTTTTTTCTTCCEEECCTT--CCEEC--TTTTTTCTTCCEEEECTT--CCBCC-GGGGTTCTTCCEEEESSCHHH
T ss_pred cccccCceeecCCCCcCEEEeCCc--ccEeh--HhHhhCCCCCCEEEECcc--cCEEh-HhHhhCCCCCCEEEECCceee
Confidence 333333456888999999999753 33322 346788999999999654 44554 456888999999999987433
Q ss_pred ccCccccCCCCCCEEeccCCc
Q 044579 824 SLPSSIKQLSQLRKLDLSNCN 844 (1103)
Q Consensus 824 ~lp~~i~~l~~L~~L~L~~n~ 844 (1103)
. ..+..+.+|+.+.+..+.
T Consensus 371 ~--~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 371 W--NAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp H--HTCBCCCCC---------
T ss_pred h--hhhhccCCCCEEEeCCCC
Confidence 2 345667788888776554
No 195
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.15 E-value=2.1e-05 Score=87.53 Aligned_cols=179 Identities=12% Similarity=0.143 Sum_probs=97.1
Q ss_pred CCCCcc-ccchh--HHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHH
Q 044579 180 DLDGLV-GLNTR--IEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRD 256 (1103)
Q Consensus 180 ~~~~~v-Gr~~~--~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~ 256 (1103)
..+.|| |.... ...+..+..........+.|+|++|+||||||+.+++.....-...+++. .. .+..
T Consensus 9 ~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~-~~---------~~~~ 78 (324)
T 1l8q_A 9 TLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS-AD---------DFAQ 78 (324)
T ss_dssp CSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE-HH---------HHHH
T ss_pred CcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE-HH---------HHHH
Confidence 445676 54333 23344444332223467899999999999999999997754422233443 11 1122
Q ss_pred HHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCCCH---hHHHHHhCCCCc-cCCCcEEEEEeCchh-------
Q 044579 257 EVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVNDEF---TQLESLAGGVDR-FSPGSRIVITTRDKQ------- 325 (1103)
Q Consensus 257 ~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~---~~l~~l~~~~~~-~~~gs~IIiTTR~~~------- 325 (1103)
.+...+... ....+...++ ++.+|++||++.-. ...+.+...+.. ...|.+||+||....
T Consensus 79 ~~~~~~~~~--------~~~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~ 149 (324)
T 1l8q_A 79 AMVEHLKKG--------TINEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVS 149 (324)
T ss_dssp HHHHHHHHT--------CHHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSC
T ss_pred HHHHHHHcC--------cHHHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhh
Confidence 222222110 1112222232 36799999996211 122222222111 134667888886331
Q ss_pred --hHhhcCcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhH
Q 044579 326 --VLDKCGVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLA 381 (1103)
Q Consensus 326 --v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLa 381 (1103)
+...+.....+++++ +.++..+++...+........ .+....+++++ |..-.
T Consensus 150 ~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~--~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 150 DRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELR--KEVIDYLLENT-KNVRE 203 (324)
T ss_dssp HHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCC--HHHHHHHHHHC-SSHHH
T ss_pred hHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHhC-CCHHH
Confidence 122222336789999 999999999888743322221 35567778888 77643
No 196
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.10 E-value=6.5e-05 Score=87.12 Aligned_cols=188 Identities=15% Similarity=0.167 Sum_probs=105.4
Q ss_pred CCCCCCCccccchhHHHHHHhhcc----------cCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhh
Q 044579 177 ESTDLDGLVGLNTRIEEMKSLLCL----------ESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKA 246 (1103)
Q Consensus 177 ~~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~ 246 (1103)
++...++++|.+..++.|.+.+.. .....+.|.|+|++|+|||+||+++++.... ..++..+..
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~---~~~~~v~~~--- 202 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN---STFFSISSS--- 202 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS---SEEEEECCC---
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC---CCEEEEeHH---
Confidence 344457899999999888876631 1123467899999999999999999987621 111111111
Q ss_pred cccChHHHHHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCCCH-------------hHHHHHhCCCCcc--
Q 044579 247 NKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVNDEF-------------TQLESLAGGVDRF-- 311 (1103)
Q Consensus 247 ~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~-------------~~l~~l~~~~~~~-- 311 (1103)
. +.....+.. .......+...-..++.+|++|+++ .. .....+...+...
T Consensus 203 ---~-------l~~~~~g~~----~~~~~~~f~~a~~~~~~vl~iDEid-~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~ 267 (444)
T 2zan_A 203 ---D-------LVSKWLGES----EKLVKNLFQLARENKPSIIFIDEID-SLCGSRSENESEAARRIKTEFLVQMQGVGV 267 (444)
T ss_dssp -------------------C----CCTHHHHHHHHHHSCSEEEEESCTT-TTCCCSSCCCCGGGHHHHHHHHTTTTCSSC
T ss_pred ---H-------HHhhhcchH----HHHHHHHHHHHHHcCCeEEEEechH-hhccCCCCccccHHHHHHHHHHHHHhCccc
Confidence 0 111111111 0011112222224567899999997 32 1234444444332
Q ss_pred -CCCcEEEEEeCchhhHhh---cCcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCC-hhHHHHHH
Q 044579 312 -SPGSRIVITTRDKQVLDK---CGVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGN-PLALEVLG 386 (1103)
Q Consensus 312 -~~gs~IIiTTR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~lg 386 (1103)
..+..||.||.....+.. -.....+.++..+.++..+++..++....... .......|++.+.|. +-.|..+.
T Consensus 268 ~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l--~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 268 DNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSL--TEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp CCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEEC--CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 345667777765432211 14456788999999999999988763322111 123456777788874 44555544
Q ss_pred h
Q 044579 387 S 387 (1103)
Q Consensus 387 ~ 387 (1103)
.
T Consensus 346 ~ 346 (444)
T 2zan_A 346 R 346 (444)
T ss_dssp H
T ss_pred H
Confidence 3
No 197
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.10 E-value=1.2e-05 Score=81.32 Aligned_cols=50 Identities=26% Similarity=0.335 Sum_probs=41.6
Q ss_pred CCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhc
Q 044579 180 DLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISR 231 (1103)
Q Consensus 180 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (1103)
....++||+.+++.+.+.+.. ...+.+.|+|.+|+||||+|+++++....
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~--~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSR--RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS--SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ccchhhcchHHHHHHHHHHhC--CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 346799999999999988864 23456789999999999999999987644
No 198
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.08 E-value=6.3e-05 Score=83.32 Aligned_cols=184 Identities=15% Similarity=0.122 Sum_probs=99.7
Q ss_pred CCCCccccchhHHHHHHhhcc----------cCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhccc
Q 044579 180 DLDGLVGLNTRIEEMKSLLCL----------ESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKM 249 (1103)
Q Consensus 180 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 249 (1103)
.-++++|.+..++.|.+.+.. .....+.|.|+|++|+|||+||+++++.... ..++..+..+..
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~---~~~~~i~~~~l~--- 83 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN---STFFSISSSDLV--- 83 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS---CEEEEEECCSSC---
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC---CcEEEEEhHHHH---
Confidence 346788888888887765531 1123467899999999999999999987621 111111111100
Q ss_pred ChHHHHHHHHHhhhCCCCccccccchH-HHHHhhcCCceEEEEeCCCCCH-------------hHHHHHhC---CCCccC
Q 044579 250 GVIHVRDEVISQVLGENLKIGTLIVPQ-NIKKRLQRVKVLIVLDDVNDEF-------------TQLESLAG---GVDRFS 312 (1103)
Q Consensus 250 ~~~~~~~~ll~~l~~~~~~~~~~~~~~-~l~~~L~~k~~LlVLDdv~~~~-------------~~l~~l~~---~~~~~~ 312 (1103)
....... ..... .+...-..++.+|++|+++ .. .....+.. ......
T Consensus 84 --------------~~~~g~~-~~~~~~lf~~a~~~~~~vl~iDEid-~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~ 147 (322)
T 1xwi_A 84 --------------SKWLGES-EKLVKNLFQLARENKPSIIFIDEID-SLCGSRSENESEAARRIKTEFLVQMQGVGVDN 147 (322)
T ss_dssp --------------CSSCCSC-HHHHHHHHHHHHHTSSEEEEEETTT-GGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCC
T ss_pred --------------hhhhhHH-HHHHHHHHHHHHhcCCcEEEeecHH-HhccccccccchHHHHHHHHHHHHHhcccccC
Confidence 0000000 00011 1222223567899999997 32 01122221 111123
Q ss_pred CCcEEEEEeCchhhHh-h--cCcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCC-hhHHHHHHh
Q 044579 313 PGSRIVITTRDKQVLD-K--CGVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGN-PLALEVLGS 387 (1103)
Q Consensus 313 ~gs~IIiTTR~~~v~~-~--~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~lg~ 387 (1103)
.+..||.||....... . -..+..+.++..+.++..+++..+........ .......+++.+.|. +-.|..+..
T Consensus 148 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l--~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 148 DGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSL--TEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp TTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCC--CHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4556666675443211 1 14456888999999999999988763322211 123456777778776 444555544
No 199
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.07 E-value=0.00061 Score=77.49 Aligned_cols=105 Identities=16% Similarity=0.204 Sum_probs=49.0
Q ss_pred ccCCCCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccccCCccccCCCCCCeeeccCCCCCCCCCCCcccCC
Q 044579 729 VECLTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELPSSFANLEGLEKLVLVGCSKLNKLPHSIDFCC 808 (1103)
Q Consensus 729 ~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~~~~~~ 808 (1103)
+..+.+|+.+.+..+ ........+.++.+|+.+.+..+ +..++ ...+.++.+|+.+.+..+ ...++ ...|.+
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~--v~~I~--~~aF~~~~~l~~i~l~~~--i~~i~-~~aF~~ 284 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN--VTSIG--SFLLQNCTALKTLNFYAK--VKTVP-YLLCSG 284 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT--CCEEC--TTTTTTCTTCCEEEECCC--CSEEC-TTTTTT
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC--ccEeC--ccccceeehhcccccccc--ceecc-cccccc
Confidence 344455555555432 12222233445555555555432 12211 223445555555555432 22222 233455
Q ss_pred CCCCCEEeCCCCCccccC-ccccCCCCCCEEecc
Q 044579 809 LSSLQWLDLSGNNFESLP-SSIKQLSQLRKLDLS 841 (1103)
Q Consensus 809 l~~L~~L~Ls~n~l~~lp-~~i~~l~~L~~L~L~ 841 (1103)
+++|+.+.+.++.++.++ ..+.++.+|+.+.|.
T Consensus 285 c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 285 CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp CTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred ccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence 566666666665565554 334555666666654
No 200
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.07 E-value=1.3e-05 Score=92.73 Aligned_cols=179 Identities=16% Similarity=0.231 Sum_probs=102.8
Q ss_pred CCCCCCCccccchhH---HHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHH
Q 044579 177 ESTDLDGLVGLNTRI---EEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIH 253 (1103)
Q Consensus 177 ~~~~~~~~vGr~~~~---~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~ 253 (1103)
.|...+.+||.+..+ +.+...+..+. ...+.|+|.+|+||||+|+.+++.....|.. +. ....+...
T Consensus 21 rP~~l~~ivGq~~~~~~~~~L~~~i~~~~--~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~---l~-----a~~~~~~~ 90 (447)
T 3pvs_A 21 RPENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIARYANADVER---IS-----AVTSGVKE 90 (447)
T ss_dssp CCCSTTTCCSCHHHHSTTSHHHHHHHHTC--CCEEEEECSTTSSHHHHHHHHHHHTTCEEEE---EE-----TTTCCHHH
T ss_pred CCCCHHHhCCcHHHHhchHHHHHHHHcCC--CcEEEEECCCCCcHHHHHHHHHHHhCCCeEE---EE-----eccCCHHH
Confidence 344567899999888 67777776433 4679999999999999999999887544321 11 11122222
Q ss_pred HHHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCCC-HhHHHHHhCCCCccCCCcEEEE-EeCchh--hHh-
Q 044579 254 VRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVNDE-FTQLESLAGGVDRFSPGSRIVI-TTRDKQ--VLD- 328 (1103)
Q Consensus 254 ~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~-~~~l~~l~~~~~~~~~gs~IIi-TTR~~~--v~~- 328 (1103)
+ ++++... ......+++.+|++|+++.- ..+.+.|...+.. ....+|. ||.+.. +..
T Consensus 91 i-r~~~~~a---------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~a 152 (447)
T 3pvs_A 91 I-REAIERA---------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSA 152 (447)
T ss_dssp H-HHHHHHH---------------HHHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHH
T ss_pred H-HHHHHHH---------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHH
Confidence 1 1111111 11112456889999999732 2223333322221 2234443 444442 111
Q ss_pred hcCcceEEEccCCChhHHHHHHHHhhhccC-----CCChhHHHHHHHHHHHhCCChhHHH
Q 044579 329 KCGVSYIYKVKRLEHDNALELFCRKAIRQN-----SRSQDLLELSKEIVGYAKGNPLALE 383 (1103)
Q Consensus 329 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~-----~~~~~~~~~~~~i~~~~~G~PLal~ 383 (1103)
......++.+++++.++..+++...+-... ....-..+....++++++|.+-.+.
T Consensus 153 L~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~ll 212 (447)
T 3pvs_A 153 LLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRAL 212 (447)
T ss_dssp HHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHH
T ss_pred HhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHH
Confidence 112345888999999999999988764311 1111234567788888999886544
No 201
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.05 E-value=0.0004 Score=79.01 Aligned_cols=122 Identities=13% Similarity=0.182 Sum_probs=76.8
Q ss_pred CccEEecCCccceecC-ccccCCCCCCEEecCCCcccccccccccCCCCCcEEeecCCCCCCccccCC-ccccCCCCCCe
Q 044579 711 KITELNLCDTAIEEVP-SSVECLTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDCLSLETITELP-SSFANLEGLEK 788 (1103)
Q Consensus 711 ~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~i~~lp-~~~~~l~~L~~ 788 (1103)
+|+.+.+..+ +..++ ..+.++.+|+.+.+..+ +...-...+.++.+|+.+.+... +.. ++ ..+.++++|+.
T Consensus 218 ~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~---i~~~aF~~c~~L~~ 290 (379)
T 4h09_A 218 NLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKT---VPYLLCSGCSNLTK 290 (379)
T ss_dssp SCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSE---ECTTTTTTCTTCCE
T ss_pred ccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc--cee---cccccccccccccc
Confidence 4445544433 33333 24567778888888664 33333455777888888888652 222 33 35677888888
Q ss_pred eeccCCCCCCCCCCCcccCCCCCCCEEeCCCCCccccC-ccccCCCCCCEEeccC
Q 044579 789 LVLVGCSKLNKLPHSIDFCCLSSLQWLDLSGNNFESLP-SSIKQLSQLRKLDLSN 842 (1103)
Q Consensus 789 L~L~~~~~~~~lp~~~~~~~l~~L~~L~Ls~n~l~~lp-~~i~~l~~L~~L~L~~ 842 (1103)
+.+.++.+ ..++ ...|.++.+|+.+.|.. +++.++ ..+.++++|+.+.|..
T Consensus 291 i~l~~~~i-~~I~-~~aF~~c~~L~~i~lp~-~l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 291 VVMDNSAI-ETLE-PRVFMDCVKLSSVTLPT-ALKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp EEECCTTC-CEEC-TTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCCCCCCT
T ss_pred cccccccc-ceeh-hhhhcCCCCCCEEEcCc-cccEEHHHHhhCCCCCCEEEECC
Confidence 88876543 3343 45577788888888864 366665 3567788888877754
No 202
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.04 E-value=3.4e-05 Score=88.15 Aligned_cols=186 Identities=17% Similarity=0.157 Sum_probs=101.2
Q ss_pred CCCCCCCccccchhHHHHHHhhcc----------cCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhh
Q 044579 177 ESTDLDGLVGLNTRIEEMKSLLCL----------ESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKA 246 (1103)
Q Consensus 177 ~~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~ 246 (1103)
.+...++++|.+..++.+.+.+.. .....+.|.|+|.+|+|||++|++++.+....| +..+..+..
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~----~~v~~~~l~ 185 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATF----FNISAASLT 185 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEE----EEECSCCC-
T ss_pred CCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcE----EEeeHHHhh
Confidence 344557899999999999887731 112246789999999999999999988754322 222111110
Q ss_pred cccChHHHHHHHHHhhhCCCCccccccchH-HHHHhhcCCceEEEEeCCCCCH------------h-HHHHHhCCC----
Q 044579 247 NKMGVIHVRDEVISQVLGENLKIGTLIVPQ-NIKKRLQRVKVLIVLDDVNDEF------------T-QLESLAGGV---- 308 (1103)
Q Consensus 247 ~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~-~l~~~L~~k~~LlVLDdv~~~~------------~-~l~~l~~~~---- 308 (1103)
.. ..+.. . .... .+...-..++.+|+||+++ .. . ....+...+
T Consensus 186 ~~-------------~~g~~----~-~~~~~~~~~a~~~~~~il~iDEid-~l~~~~~~~~~~~~~~~~~~ll~~l~~~~ 246 (389)
T 3vfd_A 186 SK-------------YVGEG----E-KLVRALFAVARELQPSIIFIDQVD-SLLCERREGEHDASRRLKTEFLIEFDGVQ 246 (389)
T ss_dssp -------------------C----H-HHHHHHHHHHHHSSSEEEEEETGG-GGC--------CTHHHHHHHHHHHHHHHC
T ss_pred cc-------------ccchH----H-HHHHHHHHHHHhcCCeEEEEECch-hhcccCCCccchHHHHHHHHHHHHhhccc
Confidence 00 00000 0 0001 1222223456799999996 22 0 111121111
Q ss_pred CccCCCcEEEEEeCchhhHh-h--cCcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChh-HHHH
Q 044579 309 DRFSPGSRIVITTRDKQVLD-K--CGVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPL-ALEV 384 (1103)
Q Consensus 309 ~~~~~gs~IIiTTR~~~v~~-~--~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~ 384 (1103)
........||.||.....+. . -.....+.++..+.++..+++...+-....... .+....+++.+.|..- ++..
T Consensus 247 ~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~--~~~~~~la~~~~g~~~~~l~~ 324 (389)
T 3vfd_A 247 SAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLT--QKELAQLARMTDGYSGSDLTA 324 (389)
T ss_dssp -----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSC--HHHHHHHHHHTTTCCHHHHHH
T ss_pred ccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHcCCCCHHHHHH
Confidence 11123445666676433211 1 133457889999999999999877643322221 2456778888888544 5555
Q ss_pred HHh
Q 044579 385 LGS 387 (1103)
Q Consensus 385 lg~ 387 (1103)
+..
T Consensus 325 L~~ 327 (389)
T 3vfd_A 325 LAK 327 (389)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 203
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.02 E-value=4.7e-05 Score=84.74 Aligned_cols=179 Identities=13% Similarity=0.156 Sum_probs=102.5
Q ss_pred CCCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHH
Q 044579 177 ESTDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRD 256 (1103)
Q Consensus 177 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~ 256 (1103)
.|...++++|.+..++.+..++..+. ...++.++|++|+|||++|+++++.+... .+.+. . ...+.. ..+
T Consensus 21 rP~~~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~l~~~---~~~i~-~----~~~~~~-~i~ 90 (324)
T 3u61_B 21 RPSTIDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHDVNAD---MMFVN-G----SDCKID-FVR 90 (324)
T ss_dssp CCCSTTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHHTTEE---EEEEE-T----TTCCHH-HHH
T ss_pred CCCCHHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhCCC---EEEEc-c----cccCHH-HHH
Confidence 34456789999999999999987432 23578889999999999999999876322 22222 1 112221 112
Q ss_pred HHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCCCHh---HHHHHhCCCCccCCCcEEEEEeCchhhH-hhc-C
Q 044579 257 EVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVNDEFT---QLESLAGGVDRFSPGSRIVITTRDKQVL-DKC-G 331 (1103)
Q Consensus 257 ~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~---~l~~l~~~~~~~~~gs~IIiTTR~~~v~-~~~-~ 331 (1103)
+.+...... ....+++.++|+|+++ ... ..+.+...+.....+.++|+||....-. ... .
T Consensus 91 ~~~~~~~~~--------------~~~~~~~~vliiDEi~-~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~s 155 (324)
T 3u61_B 91 GPLTNFASA--------------ASFDGRQKVIVIDEFD-RSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQS 155 (324)
T ss_dssp THHHHHHHB--------------CCCSSCEEEEEEESCC-CGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHH
T ss_pred HHHHHHHhh--------------cccCCCCeEEEEECCc-ccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHh
Confidence 212111100 0012367899999998 433 3444443333334567888888754321 110 1
Q ss_pred cceEEEccCCChhHHHHHHH-------HhhhccCCCChhHHHHHHHHHHHhCCChhH
Q 044579 332 VSYIYKVKRLEHDNALELFC-------RKAIRQNSRSQDLLELSKEIVGYAKGNPLA 381 (1103)
Q Consensus 332 ~~~~~~l~~L~~~ea~~Lf~-------~~a~~~~~~~~~~~~~~~~i~~~~~G~PLa 381 (1103)
....+++++++.++-.+++. ..+......... .+....+++.++|.+..
T Consensus 156 R~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~gd~R~ 211 (324)
T 3u61_B 156 RCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD-MKVVAALVKKNFPDFRK 211 (324)
T ss_dssp HSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC-HHHHHHHHHHTCSCTTH
T ss_pred hCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc-HHHHHHHHHhCCCCHHH
Confidence 12578999999888543332 222222211111 25567788888887754
No 204
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.96 E-value=3.6e-05 Score=85.01 Aligned_cols=151 Identities=13% Similarity=0.132 Sum_probs=86.6
Q ss_pred CccccchhHHHHHHhhccc-------------CCCeEEEEEeecCCChhHHHHHHHHHHHhccCC--c-eEEEEechhhh
Q 044579 183 GLVGLNTRIEEMKSLLCLE-------------SHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQ--G-KCFMANVREKA 246 (1103)
Q Consensus 183 ~~vGr~~~~~~l~~~L~~~-------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~--~-~~~~~~~~~~~ 246 (1103)
.++|.+..++.+.+++... ......+.|+|.+|+|||++|+.+++.+..... . .+...+.....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 3789888888887665411 233457899999999999999999987644221 1 11111111110
Q ss_pred cccChHHHHHHHHHhhhCCCCccccccchHHHHHhh-cCCceEEEEeCCCC----------CHhHHHHHhCCCCccCCCc
Q 044579 247 NKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRL-QRVKVLIVLDDVND----------EFTQLESLAGGVDRFSPGS 315 (1103)
Q Consensus 247 ~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~----------~~~~l~~l~~~~~~~~~gs 315 (1103)
....+ .....+...+ ..+.-+|++|+++. ....+..+...+.....+.
T Consensus 112 -------------~~~~g--------~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~ 170 (309)
T 3syl_A 112 -------------GQYIG--------HTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDL 170 (309)
T ss_dssp -------------CSSTT--------CHHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTC
T ss_pred -------------hhccc--------ccHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCE
Confidence 00000 0001111111 11345999999961 1222344433333334567
Q ss_pred EEEEEeCchh----------hHhhcCcceEEEccCCChhHHHHHHHHhhhc
Q 044579 316 RIVITTRDKQ----------VLDKCGVSYIYKVKRLEHDNALELFCRKAIR 356 (1103)
Q Consensus 316 ~IIiTTR~~~----------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 356 (1103)
.||.||.... +.. .....+.+++++.++..+++...+-.
T Consensus 171 ~~i~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 171 VVILAGYADRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp EEEEEECHHHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred EEEEeCChHHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHH
Confidence 8888886432 111 23368999999999999999887643
No 205
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.86 E-value=0.0003 Score=77.08 Aligned_cols=154 Identities=15% Similarity=0.227 Sum_probs=89.5
Q ss_pred CCCCccccchhHHHHHHhhcc-----------cCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcc
Q 044579 180 DLDGLVGLNTRIEEMKSLLCL-----------ESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANK 248 (1103)
Q Consensus 180 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~ 248 (1103)
.-++++|.+..+++|.+.+.. +-...+.|.|+|++|+|||+||++++......| +.+. .
T Consensus 13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~---i~v~-~------ 82 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF---ISIK-G------ 82 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEE---EEEC-H------
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCE---EEEE-h------
Confidence 346688999888888776642 123356789999999999999999998764322 1111 1
Q ss_pred cChHHHHHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCCCHhH----------------HHHHhCCCCc--
Q 044579 249 MGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVNDEFTQ----------------LESLAGGVDR-- 310 (1103)
Q Consensus 249 ~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~~----------------l~~l~~~~~~-- 310 (1103)
. ++.....+.... .....+.......+.++++|+++ .... ...+...+..
T Consensus 83 ---~----~l~~~~~g~~~~----~~~~~f~~a~~~~p~il~iDEid-~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~ 150 (301)
T 3cf0_A 83 ---P----ELLTMWFGESEA----NVREIFDKARQAAPCVLFFDELD-SIAKARGGNIGDGGGAADRVINQILTEMDGMS 150 (301)
T ss_dssp ---H----HHHHHHHTTCTT----HHHHHHHHHHHTCSEEEEECSTT-HHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC
T ss_pred ---H----HHHhhhcCchHH----HHHHHHHHHHhcCCeEEEEEChH-HHhhccCCCcCCcchHHHHHHHHHHHHhhccc
Confidence 1 122222222110 01113333334567999999997 2110 1222211111
Q ss_pred cCCCcEEEEEeCchhhHh-----hcCcceEEEccCCChhHHHHHHHHhhh
Q 044579 311 FSPGSRIVITTRDKQVLD-----KCGVSYIYKVKRLEHDNALELFCRKAI 355 (1103)
Q Consensus 311 ~~~gs~IIiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 355 (1103)
...+..||.||.....+. .......+.++..+.++-.+++....-
T Consensus 151 ~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~ 200 (301)
T 3cf0_A 151 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLR 200 (301)
T ss_dssp TTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHT
T ss_pred CCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHc
Confidence 123567777776553221 113456889999999999998877653
No 206
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.82 E-value=0.00028 Score=78.55 Aligned_cols=181 Identities=10% Similarity=0.065 Sum_probs=98.1
Q ss_pred hhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHHHHHHhh------
Q 044579 189 TRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRDEVISQV------ 262 (1103)
Q Consensus 189 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ll~~l------ 262 (1103)
+..+.+...+..+ .-.+.+.++|+.|+||||+|+.+++.+....... ....+.-.....+....
T Consensus 9 ~~~~~l~~~i~~~-~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~---------~~~c~~c~~c~~~~~~~~~d~~~ 78 (334)
T 1a5t_A 9 PDFEKLVASYQAG-RGHHALLIQALPGMGDDALIYALSRYLLCQQPQG---------HKSCGHCRGCQLMQAGTHPDYYT 78 (334)
T ss_dssp HHHHHHHHHHHTT-CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBT---------TBCCSCSHHHHHHHHTCCTTEEE
T ss_pred HHHHHHHHHHHcC-CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCC---------CCCCCCCHHHHHHhcCCCCCEEE
Confidence 3345555555422 2245789999999999999999998764332100 00000000000000000
Q ss_pred -hCCC-CccccccchHHHHHhh-----cCCceEEEEeCCCC-CHhHHHHHhCCCCccCCCcEEEEEeCchh-hHhhc-Cc
Q 044579 263 -LGEN-LKIGTLIVPQNIKKRL-----QRVKVLIVLDDVND-EFTQLESLAGGVDRFSPGSRIVITTRDKQ-VLDKC-GV 332 (1103)
Q Consensus 263 -~~~~-~~~~~~~~~~~l~~~L-----~~k~~LlVLDdv~~-~~~~l~~l~~~~~~~~~gs~IIiTTR~~~-v~~~~-~~ 332 (1103)
.... ......+....+.+.+ .+++-++|+|+++. .....+.+...+....+++.+|++|.+.+ +.... ..
T Consensus 79 ~~~~~~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SR 158 (334)
T 1a5t_A 79 LAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSR 158 (334)
T ss_dssp ECCCTTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTT
T ss_pred EeccccCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhc
Confidence 0000 0000000011122222 24578899999973 23344555554544456777777776653 32222 33
Q ss_pred ceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhHHHHHH
Q 044579 333 SYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLALEVLG 386 (1103)
Q Consensus 333 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~lg 386 (1103)
...+++++++.++..+.+...+ .. . .+.+..+++.++|.|..+..+.
T Consensus 159 c~~~~~~~~~~~~~~~~L~~~~---~~-~---~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 159 CRLHYLAPPPEQYAVTWLSREV---TM-S---QDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp SEEEECCCCCHHHHHHHHHHHC---CC-C---HHHHHHHHHHTTTCHHHHHHTT
T ss_pred ceeeeCCCCCHHHHHHHHHHhc---CC-C---HHHHHHHHHHcCCCHHHHHHHh
Confidence 4689999999999999998765 11 1 2455778999999997665443
No 207
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.74 E-value=0.00027 Score=79.10 Aligned_cols=184 Identities=14% Similarity=0.232 Sum_probs=103.8
Q ss_pred CCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhcc-CCceEEEEechhhhcccChHHHHH
Q 044579 178 STDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRH-FQGKCFMANVREKANKMGVIHVRD 256 (1103)
Q Consensus 178 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~~~~~~~~~~~~ 256 (1103)
|.....++|.+..++.|...+..+. ...+.++|+.|+||||+|+.++..+... +...+.-.+. +...+...+ +
T Consensus 21 p~~~~~~~g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~---~~~~~~~~i-r 94 (340)
T 1sxj_C 21 PETLDEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNA---SDDRGIDVV-R 94 (340)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECT---TSCCSHHHH-H
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcC---cccccHHHH-H
Confidence 3445668898888888888876442 3338999999999999999999876432 1111111111 111122211 1
Q ss_pred HHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCC-CHhHHHHHhCCCCccCCCcEEEEEeCchh-hHhh-cCcc
Q 044579 257 EVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVND-EFTQLESLAGGVDRFSPGSRIVITTRDKQ-VLDK-CGVS 333 (1103)
Q Consensus 257 ~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~-~~~~l~~l~~~~~~~~~gs~IIiTTR~~~-v~~~-~~~~ 333 (1103)
+.+....... ....+.+-++|+|+++. .....+.+...+.......++|++|.... +... ....
T Consensus 95 ~~i~~~~~~~-------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~ 161 (340)
T 1sxj_C 95 NQIKDFASTR-------------QIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQC 161 (340)
T ss_dssp THHHHHHHBC-------------CSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHHHHhhc-------------ccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhc
Confidence 1111111000 00123467899999962 22333444333333345667777775442 2111 1223
Q ss_pred eEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhHH
Q 044579 334 YIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLAL 382 (1103)
Q Consensus 334 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal 382 (1103)
..+++.+++.++..+.+...+-.....-. .+..+.+++.++|.+--+
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~~~~~~~~i~--~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 162 TRFRFQPLPQEAIERRIANVLVHEKLKLS--PNAEKALIELSNGDMRRV 208 (340)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCCBC--HHHHHHHHHHHTTCHHHH
T ss_pred eeEeccCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHH
Confidence 57899999999998888776532222211 345678888999988643
No 208
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.72 E-value=0.002 Score=71.64 Aligned_cols=258 Identities=15% Similarity=0.181 Sum_probs=132.6
Q ss_pred CCCCCCccccchhHHHHHHhhccc---CCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHH
Q 044579 178 STDLDGLVGLNTRIEEMKSLLCLE---SHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHV 254 (1103)
Q Consensus 178 ~~~~~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~ 254 (1103)
+.....++|.+..++.+...+..+ ......++|+|++|+||||||+.++..+...|. ... .... .....+
T Consensus 21 ~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~---~~s--g~~~--~~~~~l 93 (334)
T 1in4_A 21 PKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH---VTS--GPVL--VKQGDM 93 (334)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE---EEE--TTTC--CSHHHH
T ss_pred CccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE---EEe--chHh--cCHHHH
Confidence 334567889888788777666532 223457899999999999999999998744321 111 0000 000000
Q ss_pred HHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCCC-HhHHHHHhCCCCcc--------C----------CCc
Q 044579 255 RDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVNDE-FTQLESLAGGVDRF--------S----------PGS 315 (1103)
Q Consensus 255 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~-~~~l~~l~~~~~~~--------~----------~gs 315 (1103)
. .+...+ .++-++++|+++.- ....+.+....... + +..
T Consensus 94 -~--------------------~~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~ 151 (334)
T 1in4_A 94 -A--------------------AILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPF 151 (334)
T ss_dssp -H--------------------HHHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCC
T ss_pred -H--------------------HHHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCe
Confidence 0 111112 23456778888521 12222221110000 0 111
Q ss_pred EEE-EEeCchhhHhhc--CcceEEEccCCChhHHHHHHHHhhhccCCCChhHHHHHHHHHHHhCCChhHHHHHHhhc---
Q 044579 316 RIV-ITTRDKQVLDKC--GVSYIYKVKRLEHDNALELFCRKAIRQNSRSQDLLELSKEIVGYAKGNPLALEVLGSSL--- 389 (1103)
Q Consensus 316 ~II-iTTR~~~v~~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~lg~~L--- 389 (1103)
.++ .|++...+.... .......+++.+.++-.+++.+.+-..... -..+.+..|++.+.|.|-.+..+...+
T Consensus 152 ~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~--~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~ 229 (334)
T 1in4_A 152 TLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVE--IEDAAAEMIAKRSRGTPRIAIRLTKRVRDM 229 (334)
T ss_dssp EEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCC--BCHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred EEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 222 344433221111 233468899999999999998876332222 223567889999999996544332211
Q ss_pred ---CC---CCHHHHHHHHHHhhhcCCcchhhHHHhhhcCCCHHHHHHHhhhhccCCC--CCHHHHHHHhcC-CCchH---
Q 044579 390 ---YQ---KSKQQWKVKLQNLKLISEPNIYNVLKISYDDLNPEEKKIFLDIACFFKG--EDADFVTRIQDD-PTSLD--- 457 (1103)
Q Consensus 390 ---~~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~--~~~~~~~~~~~~-~~~l~--- 457 (1103)
.+ .+.+..+.+++.+. ..-.+++...+.++..++-.+.+ ...+.+...... ...+.
T Consensus 230 a~~~~~~~It~~~v~~al~~~~------------~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~t~~~~~ 297 (334)
T 1in4_A 230 LTVVKADRINTDIVLKTMEVLN------------IDDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVY 297 (334)
T ss_dssp HHHHTCSSBCHHHHHHHHHHHT------------CCTTCCCHHHHHHHHHHHHHSTTCCBCHHHHHHHHTSCHHHHHHHT
T ss_pred HHHcCCCCcCHHHHHHHHHHhC------------CCcCCCCHHHHHHHHHHHHHhCCCcchHHHHHHHhCCCcchHHHHH
Confidence 11 12333333333221 11235666666666554433333 233444444333 11122
Q ss_pred --HHhhccCeeEcCCCeEEechh
Q 044579 458 --NIVDKSLITISDENRLQMHDL 478 (1103)
Q Consensus 458 --~L~~~sLi~~~~~~~~~mHdl 478 (1103)
.|...++|+....++.....-
T Consensus 298 ~~~l~~~g~i~~~~~gr~~~~~~ 320 (334)
T 1in4_A 298 EPYLLQAGFLARTPRGRIVTEKA 320 (334)
T ss_dssp HHHHHHTTSEEEETTEEEECHHH
T ss_pred HHHHHHcCCeecccccHHhhHHH
Confidence 688899999886666544333
No 209
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.71 E-value=2.5e-05 Score=75.48 Aligned_cols=47 Identities=23% Similarity=0.218 Sum_probs=35.8
Q ss_pred CccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHH
Q 044579 183 GLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 183 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
++||+...++++.+.+..-......|.|+|.+|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 57999999999888775322233457899999999999999998753
No 210
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.68 E-value=7.7e-06 Score=82.80 Aligned_cols=118 Identities=10% Similarity=0.010 Sum_probs=72.4
Q ss_pred cccCCCCCCEEecCCC-cccc----cccccccCCCCCcEEeecCCCCCCc-cccCCccccCCCCCCeeeccCCCCCCCCC
Q 044579 728 SVECLTNLKELYLSRC-STLN----RLSTSICKLKSLHELILSDCLSLET-ITELPSSFANLEGLEKLVLVGCSKLNKLP 801 (1103)
Q Consensus 728 ~~~~l~~L~~L~L~~~-~~~~----~lp~~l~~l~~L~~L~L~~~~~l~~-i~~lp~~~~~l~~L~~L~L~~~~~~~~lp 801 (1103)
.+...++|++|+|++| .+.. .+...+...++|++|+|++|..... ...+...+...++|++|+|++|.+...-.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 4566778888888887 5543 2344455667788888887653221 11133344555778888888777543200
Q ss_pred --CCcccCCCCCCCEEeC--CCCCccc-----cCccccCCCCCCEEeccCCcC
Q 044579 802 --HSIDFCCLSSLQWLDL--SGNNFES-----LPSSIKQLSQLRKLDLSNCNM 845 (1103)
Q Consensus 802 --~~~~~~~l~~L~~L~L--s~n~l~~-----lp~~i~~l~~L~~L~L~~n~~ 845 (1103)
-...+...++|++|+| ++|.+.. +...+...++|+.|+|++|.+
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 0123344567888888 6777762 445566667888888888764
No 211
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.66 E-value=0.00028 Score=78.87 Aligned_cols=172 Identities=19% Similarity=0.252 Sum_probs=98.5
Q ss_pred CCCccccchhHHHHHHhhcc-----------cCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhccc
Q 044579 181 LDGLVGLNTRIEEMKSLLCL-----------ESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKM 249 (1103)
Q Consensus 181 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 249 (1103)
-+++.|.++.+++|.+.+.. +-...+-|.++|++|.|||.||++++......| +.....+.....
T Consensus 147 ~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f----~~v~~s~l~sk~ 222 (405)
T 4b4t_J 147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKF----IRVSGAELVQKY 222 (405)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEE----EEEEGGGGSCSS
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCc----eEEEhHHhhccc
Confidence 46788999998888776541 223356788999999999999999999876554 222221111110
Q ss_pred -C-hHHHHHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCCCH------------h---HHHHHhCCCCcc-
Q 044579 250 -G-VIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVNDEF------------T---QLESLAGGVDRF- 311 (1103)
Q Consensus 250 -~-~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~------------~---~l~~l~~~~~~~- 311 (1103)
+ .....+++ +...-...+++|++|+++.-. . .+..++..++.+
T Consensus 223 vGese~~vr~l-------------------F~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 283 (405)
T 4b4t_J 223 IGEGSRMVREL-------------------FVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE 283 (405)
T ss_dssp TTHHHHHHHHH-------------------HHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT
T ss_pred cchHHHHHHHH-------------------HHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC
Confidence 0 01111111 111224568999999997310 0 122222222212
Q ss_pred -CCCcEEEEEeCchhh-----HhhcCcceEEEccCCChhHHHHHHHHhhhccCCC-ChhHHHHHHHHHHHhCCCh
Q 044579 312 -SPGSRIVITTRDKQV-----LDKCGVSYIYKVKRLEHDNALELFCRKAIRQNSR-SQDLLELSKEIVGYAKGNP 379 (1103)
Q Consensus 312 -~~gs~IIiTTR~~~v-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~G~P 379 (1103)
..+..||.||...+. ...-..+..++++..+.++-.++|..+.-+.... ..+ ...+++.+.|.-
T Consensus 284 ~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 284 TSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp CCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSCC
T ss_pred CCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCCC
Confidence 234456667764433 2222567889999999999999998776332221 222 245666666654
No 212
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.62 E-value=0.00018 Score=83.99 Aligned_cols=180 Identities=17% Similarity=0.214 Sum_probs=98.3
Q ss_pred CCCccccchhHHHHHHhhccc-----------CCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhccc
Q 044579 181 LDGLVGLNTRIEEMKSLLCLE-----------SHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKM 249 (1103)
Q Consensus 181 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 249 (1103)
...++|.+..+++|.+++... ....+-|.|+|.+|+|||++|+++++.....| +..+..+..
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~f----v~vn~~~l~--- 275 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF----FLINGPEIM--- 275 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEE----EEEEHHHHH---
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCE----EEEEchHhh---
Confidence 356899999999998877532 23345689999999999999999988753222 222221111
Q ss_pred ChHHHHHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCC-------C-H----hHHHHHhCCCCc--cCCCc
Q 044579 250 GVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVND-------E-F----TQLESLAGGVDR--FSPGS 315 (1103)
Q Consensus 250 ~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~-------~-~----~~l~~l~~~~~~--~~~gs 315 (1103)
..+.+. ........+.....+++.+|+||+++. . . .....|...+.. ...+.
T Consensus 276 ----------~~~~g~----~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v 341 (489)
T 3hu3_A 276 ----------SKLAGE----SESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (489)
T ss_dssp ----------TSCTTH----HHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCE
T ss_pred ----------hhhcch----hHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCce
Confidence 111100 000001123333456678999999931 0 0 111222211111 12345
Q ss_pred EEEEEeCchhh-----HhhcCcceEEEccCCChhHHHHHHHHhhhccCCCC-hhHHHHHHHHHHHhCCC-hhHHHHH
Q 044579 316 RIVITTRDKQV-----LDKCGVSYIYKVKRLEHDNALELFCRKAIRQNSRS-QDLLELSKEIVGYAKGN-PLALEVL 385 (1103)
Q Consensus 316 ~IIiTTR~~~v-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~G~-PLal~~l 385 (1103)
+||.||..... .........+.++..+.++-.+++..++....... .. ..++++.+.|. +-.|..+
T Consensus 342 ~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~----l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCC----HHHHHHTCTTCCHHHHHHH
T ss_pred EEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhh----HHHHHHHccCCcHHHHHHH
Confidence 66667765432 11123456789999999999999988763322111 12 23455555553 4444444
No 213
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.61 E-value=0.00048 Score=80.36 Aligned_cols=150 Identities=15% Similarity=0.146 Sum_probs=83.0
Q ss_pred CCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccC------CceEEEEechhhhcccCh
Q 044579 178 STDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHF------QGKCFMANVREKANKMGV 251 (1103)
Q Consensus 178 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~~~~~~~~~~~~ 251 (1103)
+...+.+|||+.+++.+...+.... ..-+.|+|.+|+|||++|+.++..+...+ ...++..+..
T Consensus 176 ~~~ld~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-------- 245 (468)
T 3pxg_A 176 EDSLDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-------- 245 (468)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred cCCCCCccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC--------
Confidence 3445679999999999999886432 33567999999999999999999875432 1122211110
Q ss_pred HHHHHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCCCHhHHHHHhCCCCccCCCcEEEEEeCchhhH----
Q 044579 252 IHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVNDEFTQLESLAGGVDRFSPGSRIVITTRDKQVL---- 327 (1103)
Q Consensus 252 ~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~~l~~l~~~~~~~~~gs~IIiTTR~~~v~---- 327 (1103)
....+. ........+...-..++.+|++|. ..+....+...+. ....++|.+|......
T Consensus 246 --------~~~~g~----~e~~~~~~~~~~~~~~~~iLfiD~---~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~ 308 (468)
T 3pxg_A 246 --------TKYRGE----FEDRLKKVMDEIRQAGNIILFIDA---AIDASNILKPSLA--RGELQCIGATTLDEYRKYIE 308 (468)
T ss_dssp -------------------CTTHHHHHHHHHTCCCCEEEECC-----------CCCTT--SSSCEEEEECCTTTTHHHHT
T ss_pred --------ccccch----HHHHHHHHHHHHHhcCCeEEEEeC---chhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhh
Confidence 000000 000011123333345678999992 2333334444433 2235666666544311
Q ss_pred --hh-cCcceEEEccCCChhHHHHHHHHhh
Q 044579 328 --DK-CGVSYIYKVKRLEHDNALELFCRKA 354 (1103)
Q Consensus 328 --~~-~~~~~~~~l~~L~~~ea~~Lf~~~a 354 (1103)
.. ......+.++.++.++..+++...+
T Consensus 309 ~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 309 KDAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp TCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred cCHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 00 0122468999999999999998755
No 214
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.60 E-value=0.00016 Score=82.24 Aligned_cols=172 Identities=15% Similarity=0.231 Sum_probs=96.5
Q ss_pred CCCCccccchhHHHHHHhhc-----------ccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcc
Q 044579 180 DLDGLVGLNTRIEEMKSLLC-----------LESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANK 248 (1103)
Q Consensus 180 ~~~~~vGr~~~~~~l~~~L~-----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~ 248 (1103)
.-+++.|.++.+++|.+.+. .+-...+-|.++|++|.|||.||++++......| +.....+....
T Consensus 179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f----~~v~~s~l~~~ 254 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATF----LKLAAPQLVQM 254 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE----EEEEGGGGCSS
T ss_pred ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCE----EEEehhhhhhc
Confidence 34678899988888876543 1223457789999999999999999999875543 22222221111
Q ss_pred c-Ch-HHHHHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCC------C-H-----h---HHHHHhCCCCcc
Q 044579 249 M-GV-IHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVND------E-F-----T---QLESLAGGVDRF 311 (1103)
Q Consensus 249 ~-~~-~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~------~-~-----~---~l~~l~~~~~~~ 311 (1103)
. +- ....+.+ ....-...+++|++|+++. . . . .+..++..++.+
T Consensus 255 ~vGese~~ir~l-------------------F~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~ 315 (434)
T 4b4t_M 255 YIGEGAKLVRDA-------------------FALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGF 315 (434)
T ss_dssp CSSHHHHHHHHH-------------------HHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTS
T ss_pred ccchHHHHHHHH-------------------HHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhcc
Confidence 0 10 1111111 1111234589999999851 0 0 0 112233223322
Q ss_pred C--CCcEEEEEeCchhhHh-----hcCcceEEEccCCChhHHHHHHHHhhhccCCC-ChhHHHHHHHHHHHhCCC
Q 044579 312 S--PGSRIVITTRDKQVLD-----KCGVSYIYKVKRLEHDNALELFCRKAIRQNSR-SQDLLELSKEIVGYAKGN 378 (1103)
Q Consensus 312 ~--~gs~IIiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~G~ 378 (1103)
. .+..||.||...+.+. .-..+..++++..+.++..++|..+.-+.... ..++ ..+++.+.|.
T Consensus 316 ~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl----~~lA~~t~G~ 386 (434)
T 4b4t_M 316 SSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINW----QELARSTDEF 386 (434)
T ss_dssp CSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCH----HHHHHHCSSC
T ss_pred CCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCC
Confidence 2 3445666776544322 22456788999999999899998766432221 1222 4556666664
No 215
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.59 E-value=0.0003 Score=80.01 Aligned_cols=173 Identities=21% Similarity=0.309 Sum_probs=98.2
Q ss_pred CCCCccccchhHHHHHHhhcc-----------cCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcc
Q 044579 180 DLDGLVGLNTRIEEMKSLLCL-----------ESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANK 248 (1103)
Q Consensus 180 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~ 248 (1103)
.-+++.|.++.+++|.+.+.. +-...+-|.++|++|.|||+||+++++.....| +.....+....
T Consensus 179 ~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~----~~v~~s~l~sk 254 (437)
T 4b4t_L 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANF----IFSPASGIVDK 254 (437)
T ss_dssp CSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE----EEEEGGGTCCS
T ss_pred ChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE----EEEehhhhccc
Confidence 346788999998888776541 223457799999999999999999999875543 22222221111
Q ss_pred c-Ch-HHHHHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCCC------------Hh---HHHHHhCCCCcc
Q 044579 249 M-GV-IHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVNDE------------FT---QLESLAGGVDRF 311 (1103)
Q Consensus 249 ~-~~-~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~------------~~---~l~~l~~~~~~~ 311 (1103)
. +- ....+. .....-...+++|++|+++.- .. .+..++..++.+
T Consensus 255 ~~Gese~~ir~-------------------~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 315 (437)
T 4b4t_L 255 YIGESARIIRE-------------------MFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGF 315 (437)
T ss_dssp SSSHHHHHHHH-------------------HHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSS
T ss_pred cchHHHHHHHH-------------------HHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcc
Confidence 0 00 011111 112222456899999999720 00 122222222111
Q ss_pred --CCCcEEEEEeCchhhHh-----hcCcceEEEccCCChhHHHHHHHHhhhccCC-CChhHHHHHHHHHHHhCCCh
Q 044579 312 --SPGSRIVITTRDKQVLD-----KCGVSYIYKVKRLEHDNALELFCRKAIRQNS-RSQDLLELSKEIVGYAKGNP 379 (1103)
Q Consensus 312 --~~gs~IIiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~i~~~~~G~P 379 (1103)
..+..||.||-..+.+. .-..+..++++..+.++-.++|..+.-+... ...++ ..+++.+.|.-
T Consensus 316 ~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl----~~lA~~t~G~s 387 (437)
T 4b4t_L 316 DNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDF----EAAVKMSDGFN 387 (437)
T ss_dssp SCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCH----HHHHHTCCSCC
T ss_pred cCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCH----HHHHHhCCCCC
Confidence 23456777776554332 1135678899988999889999877643222 12222 45556666643
No 216
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.59 E-value=0.0003 Score=75.19 Aligned_cols=155 Identities=16% Similarity=0.191 Sum_probs=82.9
Q ss_pred CCCCCCccccchhHHHHHHhhcc---c-------CCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhc
Q 044579 178 STDLDGLVGLNTRIEEMKSLLCL---E-------SHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKAN 247 (1103)
Q Consensus 178 ~~~~~~~vGr~~~~~~l~~~L~~---~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~ 247 (1103)
+...++++|.+..++++.+++.. . ....+-+.|+|++|+||||+|++++......| +.+. ......
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~i~-~~~~~~ 83 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTIS-GSDFVE 83 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCE---EEEC-SCSSTT
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCE---EEEe-HHHHHH
Confidence 33456789998888777665431 0 11234588999999999999999998764332 2222 111000
Q ss_pred ccChHHHHHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCCCH----------------hHHHHHhCCCCc-
Q 044579 248 KMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVNDEF----------------TQLESLAGGVDR- 310 (1103)
Q Consensus 248 ~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~----------------~~l~~l~~~~~~- 310 (1103)
. ..+ .........+.......+.++++|+++ .. ..+..+...+..
T Consensus 84 ~-------------~~~----~~~~~~~~~~~~a~~~~~~il~iDeid-~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 145 (257)
T 1lv7_A 84 M-------------FVG----VGASRVRDMFEQAKKAAPCIIFIDEID-AVGRQRGAGLGGGHDEREQTLNQMLVEMDGF 145 (257)
T ss_dssp S-------------CCC----CCHHHHHHHHHHHHTTCSEEEEETTHH-HHTCCCSTTSCCTTCHHHHHHHHHHHHHHTC
T ss_pred H-------------hhh----hhHHHHHHHHHHHHHcCCeeehhhhhh-hhccCCCCCcCCCchHHHHHHHHHHHHhhCc
Confidence 0 000 000000112222234456899999984 11 112222211111
Q ss_pred -cCCCcEEEEEeCchhhH-hhc----CcceEEEccCCChhHHHHHHHHhh
Q 044579 311 -FSPGSRIVITTRDKQVL-DKC----GVSYIYKVKRLEHDNALELFCRKA 354 (1103)
Q Consensus 311 -~~~gs~IIiTTR~~~v~-~~~----~~~~~~~l~~L~~~ea~~Lf~~~a 354 (1103)
...+..||.||...+.. ... .....+.++..+.++-.+++..+.
T Consensus 146 ~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~ 195 (257)
T 1lv7_A 146 EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM 195 (257)
T ss_dssp CSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred ccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHH
Confidence 12345677777654322 111 235678888888888888887665
No 217
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.59 E-value=0.0008 Score=72.22 Aligned_cols=49 Identities=29% Similarity=0.200 Sum_probs=34.6
Q ss_pred CCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHh
Q 044579 182 DGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 182 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
+.+||.+..+.++.+.+..-......|.|+|.+|+|||++|+.+++...
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 5689999998887766553222235678999999999999999998643
No 218
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.57 E-value=0.00031 Score=88.68 Aligned_cols=51 Identities=24% Similarity=0.354 Sum_probs=41.9
Q ss_pred CCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhc
Q 044579 179 TDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISR 231 (1103)
Q Consensus 179 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (1103)
...+.+|||+.+++++...+.... .+.+.|+|.+|+||||+|+.++..+..
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCcccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 345679999999999999886432 345789999999999999999998744
No 219
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.57 E-value=6.5e-05 Score=81.01 Aligned_cols=154 Identities=16% Similarity=0.206 Sum_probs=85.5
Q ss_pred CCCCCccccchhHHHHHHhhcc----------cCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcc
Q 044579 179 TDLDGLVGLNTRIEEMKSLLCL----------ESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANK 248 (1103)
Q Consensus 179 ~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~ 248 (1103)
...++++|.+..++++.+.+.. +....+-+.|+|++|+|||++|+++++.....|-.. . .....
T Consensus 8 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v---~-~~~~~-- 81 (268)
T 2r62_A 8 VRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSM---G-GSSFI-- 81 (268)
T ss_dssp CCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCC---C-SCTTT--
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEe---c-hHHHH--
Confidence 3457799999998888776541 111223478999999999999999999765443211 1 00000
Q ss_pred cChHHHHHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCCCHh-----------------HHHHHhCCCCcc
Q 044579 249 MGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVNDEFT-----------------QLESLAGGVDRF 311 (1103)
Q Consensus 249 ~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~-----------------~l~~l~~~~~~~ 311 (1103)
....+.. .......+......++.+|++|+++ ... .+..+...+...
T Consensus 82 -----------~~~~~~~----~~~~~~~~~~a~~~~~~vl~iDEid-~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 145 (268)
T 2r62_A 82 -----------EMFVGLG----ASRVRDLFETAKKQAPSIIFIDEID-AIGKSRAAGGVVSGNDEREQTLNQLLAEMDGF 145 (268)
T ss_dssp -----------TSCSSSC----SSSSSTTHHHHHHSCSCEEEESCGG-GTTC----------CCCSCSSTTTTTTTTTCS
T ss_pred -----------HhhcchH----HHHHHHHHHHHHhcCCeEEEEeChh-hhcccccccccCCCchhHHHHHHHHHHHhhCc
Confidence 0011110 0011112333334567899999996 221 122233333222
Q ss_pred C---CCcEEEEEeCchhhHh-----hcCcceEEEccCCChhHHHHHHHHhh
Q 044579 312 S---PGSRIVITTRDKQVLD-----KCGVSYIYKVKRLEHDNALELFCRKA 354 (1103)
Q Consensus 312 ~---~gs~IIiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a 354 (1103)
. ....||.||.....+. .......+.++..+.++..+++...+
T Consensus 146 ~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 146 GSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp SCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred ccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 1 2245677776553221 11234567888888888888887665
No 220
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.54 E-value=0.001 Score=75.43 Aligned_cols=172 Identities=15% Similarity=0.190 Sum_probs=97.0
Q ss_pred CCCccccchhHHHHHHhhc-----------ccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcc-
Q 044579 181 LDGLVGLNTRIEEMKSLLC-----------LESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANK- 248 (1103)
Q Consensus 181 ~~~~vGr~~~~~~l~~~L~-----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~- 248 (1103)
-+++.|.++.+++|.+.+. .+-...+-|.++|++|.|||+||++++.+....| +.....+....
T Consensus 208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~f----i~vs~s~L~sk~ 283 (467)
T 4b4t_H 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATF----IRVIGSELVQKY 283 (467)
T ss_dssp CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEE----EEEEGGGGCCCS
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCe----EEEEhHHhhccc
Confidence 3578899999998877643 1223467789999999999999999999876544 22222111111
Q ss_pred cCh-HHHHHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCCCH-----------h----HHHHHhCCCCcc-
Q 044579 249 MGV-IHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVNDEF-----------T----QLESLAGGVDRF- 311 (1103)
Q Consensus 249 ~~~-~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~-----------~----~l~~l~~~~~~~- 311 (1103)
.+- ....+. .....-...+++|++|+++.-. . .+..++..++.+
T Consensus 284 vGesek~ir~-------------------lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 344 (467)
T 4b4t_H 284 VGEGARMVRE-------------------LFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFD 344 (467)
T ss_dssp SSHHHHHHHH-------------------HHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSC
T ss_pred CCHHHHHHHH-------------------HHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccC
Confidence 010 111111 1122224568999999996200 0 111122221111
Q ss_pred -CCCcEEEEEeCchhh-----HhhcCcceEEEccCCChhHHHHHHHHhhhccCCC-ChhHHHHHHHHHHHhCCCh
Q 044579 312 -SPGSRIVITTRDKQV-----LDKCGVSYIYKVKRLEHDNALELFCRKAIRQNSR-SQDLLELSKEIVGYAKGNP 379 (1103)
Q Consensus 312 -~~gs~IIiTTR~~~v-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~G~P 379 (1103)
..+..||.||-.... ...-..+..++++..+.++-.++|..+.-+.... ..++ ..+++.+.|.-
T Consensus 345 ~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl----~~LA~~T~GfS 415 (467)
T 4b4t_H 345 PRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRW----ELISRLCPNST 415 (467)
T ss_dssp CTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHHCCSCC
T ss_pred CCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCH----HHHHHHCCCCC
Confidence 233455667754432 2222467889999999999999998776432221 1222 45566666653
No 221
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.53 E-value=0.00049 Score=75.78 Aligned_cols=48 Identities=19% Similarity=0.195 Sum_probs=36.7
Q ss_pred CccccchhHHHHHHhhcc------------cCCCeEEEEEeecCCChhHHHHHHHHHHHh
Q 044579 183 GLVGLNTRIEEMKSLLCL------------ESHDVRIVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 183 ~~vGr~~~~~~l~~~L~~------------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
.++|.+..++.+...+.. .......+.|+|.+|+|||++|+.+++...
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 578888888888766643 011235688999999999999999998774
No 222
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.49 E-value=0.00062 Score=77.31 Aligned_cols=53 Identities=25% Similarity=0.345 Sum_probs=41.0
Q ss_pred CCCccccchhHHHHHHhhcc-----------cCCCeEEEEEeecCCChhHHHHHHHHHHHhccC
Q 044579 181 LDGLVGLNTRIEEMKSLLCL-----------ESHDVRIVGIWGMGGIGKTTIASVVFHQISRHF 233 (1103)
Q Consensus 181 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 233 (1103)
-+++.|.+...++|.+.+.. +-...+-|.++|++|.|||+||+++++.....|
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~ 234 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAF 234 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEE
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 46788999888888775541 223456789999999999999999999875443
No 223
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.49 E-value=0.00016 Score=74.19 Aligned_cols=61 Identities=11% Similarity=0.138 Sum_probs=40.1
Q ss_pred CCCCccccchh----HHHHHHhhcccCCC--eEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEE
Q 044579 180 DLDGLVGLNTR----IEEMKSLLCLESHD--VRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMA 240 (1103)
Q Consensus 180 ~~~~~vGr~~~----~~~l~~~L~~~~~~--~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 240 (1103)
..++|++.+.. ++.+.+++...... .+.+.|+|.+|+||||||+++++....+...++++.
T Consensus 23 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 23 SLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp CTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 34567765533 33344444422221 268899999999999999999998766555555554
No 224
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.48 E-value=0.00027 Score=70.95 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=23.6
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHh
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
...++|+|++|+||||||+.++..+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999775
No 225
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.45 E-value=0.00049 Score=75.87 Aligned_cols=50 Identities=18% Similarity=0.262 Sum_probs=38.4
Q ss_pred CccccchhHHHHHHhhccc------C-CCeEEEEEeecCCChhHHHHHHHHHHHhcc
Q 044579 183 GLVGLNTRIEEMKSLLCLE------S-HDVRIVGIWGMGGIGKTTIASVVFHQISRH 232 (1103)
Q Consensus 183 ~~vGr~~~~~~l~~~L~~~------~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (1103)
.++|.+..++.+...+... . .....+.++|.+|+||||+|+.++......
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~ 74 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT 74 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC
Confidence 4789888888887766532 1 123579999999999999999999876443
No 226
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.43 E-value=3.5e-05 Score=75.94 Aligned_cols=66 Identities=17% Similarity=0.321 Sum_probs=36.4
Q ss_pred cccCCcceEecCCCCCCCccC--CCCCCC----CCccEEEecCCCCCCcc-cccccCCCcccEEEccCCCCCc
Q 044579 615 KKEASKLKSIDLCHSQHLIRM--PDLSEI----PNLERTNFFNCTNLVLV-PSSIQNFNNLSMLCFRGCESLR 680 (1103)
Q Consensus 615 ~~~l~~L~~L~L~~~~~~~~~--p~l~~l----~~L~~L~L~~~~~l~~~-~~~i~~l~~L~~L~L~~~~~l~ 680 (1103)
+..+++|++|+|++|..+++- ..++.+ ++|++|+|++|..++.- -..+..+++|++|++++|..++
T Consensus 81 L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 81 MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCC
T ss_pred hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence 345667777777776543321 113332 35777777777655441 1234556666666666665554
No 227
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.41 E-value=0.00061 Score=74.36 Aligned_cols=147 Identities=10% Similarity=0.066 Sum_probs=88.0
Q ss_pred ccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHh---ccCCceEEEEechhhhcccChHHHHHHHHHhh
Q 044579 186 GLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQIS---RHFQGKCFMANVREKANKMGVIHVRDEVISQV 262 (1103)
Q Consensus 186 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~---~~F~~~~~~~~~~~~~~~~~~~~~~~~ll~~l 262 (1103)
|-++-++.|...+..+. .+...++|++|+||||+|+.+++... ........+... ....++..+ ++++...
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~---~~~~~id~i-r~li~~~ 74 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE---GENIGIDDI-RTIKDFL 74 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS---SSCBCHHHH-HHHHHHH
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCC---cCCCCHHHH-HHHHHHH
Confidence 34555667777776443 67889999999999999999987531 112233333210 012232222 2233332
Q ss_pred hCCCCccccccchHHHHHhhcCCceEEEEeCCCC-CHhHHHHHhCCCCccCCCcEEEEEeCch-hhHhhcCcceEEEccC
Q 044579 263 LGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVND-EFTQLESLAGGVDRFSPGSRIVITTRDK-QVLDKCGVSYIYKVKR 340 (1103)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~-~~~~l~~l~~~~~~~~~gs~IIiTTR~~-~v~~~~~~~~~~~l~~ 340 (1103)
.... ..+++-++|+|+++. .....+.|...+....+.+.+|++|.++ .+....... .+++++
T Consensus 75 ~~~p---------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~ 138 (305)
T 2gno_A 75 NYSP---------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVV 138 (305)
T ss_dssp TSCC---------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEEC
T ss_pred hhcc---------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCC
Confidence 2111 123467889999973 2344555655554445677777777544 344444444 899999
Q ss_pred CChhHHHHHHHHhh
Q 044579 341 LEHDNALELFCRKA 354 (1103)
Q Consensus 341 L~~~ea~~Lf~~~a 354 (1103)
++.++..+.+...+
T Consensus 139 l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 139 NVPKEFRDLVKEKI 152 (305)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998765
No 228
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.38 E-value=0.00063 Score=76.29 Aligned_cols=172 Identities=18% Similarity=0.246 Sum_probs=95.9
Q ss_pred CCCCccccchhHHHHHHhhcc-----------cCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcc
Q 044579 180 DLDGLVGLNTRIEEMKSLLCL-----------ESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANK 248 (1103)
Q Consensus 180 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~ 248 (1103)
.-+++.|.++.+++|.+.+.. +-...+-|.++|++|.|||.||++++......| +.....+....
T Consensus 180 ~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~f----i~v~~s~l~sk 255 (437)
T 4b4t_I 180 SYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATF----LRIVGSELIQK 255 (437)
T ss_dssp CGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEE----EEEESGGGCCS
T ss_pred cceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCE----EEEEHHHhhhc
Confidence 346788899888888775531 223356799999999999999999999876544 22222111111
Q ss_pred c-C-hHHHHHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCCC---------------HhHHHHHhCCCCcc
Q 044579 249 M-G-VIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVNDE---------------FTQLESLAGGVDRF 311 (1103)
Q Consensus 249 ~-~-~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~---------------~~~l~~l~~~~~~~ 311 (1103)
. + .....+.+ +...-...+++|++|+++.- ...+..++..++.+
T Consensus 256 ~vGesek~ir~l-------------------F~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~ 316 (437)
T 4b4t_I 256 YLGDGPRLCRQI-------------------FKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGF 316 (437)
T ss_dssp SSSHHHHHHHHH-------------------HHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHC
T ss_pred cCchHHHHHHHH-------------------HHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCc
Confidence 0 1 01111111 11122356899999998620 00122222222211
Q ss_pred --CCCcEEEEEeCchhhHhh-c----CcceEEEccCCChhHHHHHHHHhhhccCCC-ChhHHHHHHHHHHHhCCC
Q 044579 312 --SPGSRIVITTRDKQVLDK-C----GVSYIYKVKRLEHDNALELFCRKAIRQNSR-SQDLLELSKEIVGYAKGN 378 (1103)
Q Consensus 312 --~~gs~IIiTTR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~G~ 378 (1103)
..+..||.||-..+.+.. . ..+..++++..+.++..++|..+.-+.... ..++ ..+++.+.|.
T Consensus 317 ~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl----~~LA~~T~Gf 387 (437)
T 4b4t_I 317 DDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNL----ETLVTTKDDL 387 (437)
T ss_dssp CCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCH----HHHHHHCCSC
T ss_pred CCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCC
Confidence 234456667765543322 1 345678899889998899998776332221 1222 3455566664
No 229
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.38 E-value=4.4e-05 Score=75.21 Aligned_cols=37 Identities=16% Similarity=0.219 Sum_probs=20.5
Q ss_pred CCCEEeCCCC-Ccc--ccCccccCCCCCCEEeccCCcCCcc
Q 044579 811 SLQWLDLSGN-NFE--SLPSSIKQLSQLRKLDLSNCNMLLS 848 (1103)
Q Consensus 811 ~L~~L~Ls~n-~l~--~lp~~i~~l~~L~~L~L~~n~~l~~ 848 (1103)
+|++|+|++| +++ .+ ..+..+++|+.|+|++|+.++.
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl-~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGI-IALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HCCEEEEESCTTCCHHHH-HHGGGCTTCCEEEEESCTTCCC
T ss_pred CCCEEEcCCCCcCCHHHH-HHHhcCCCCCEEECCCCCCCCc
Confidence 4555555554 344 12 1344567777777777765443
No 230
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.36 E-value=3.4e-05 Score=77.97 Aligned_cols=114 Identities=13% Similarity=0.080 Sum_probs=74.3
Q ss_pred CCccEEecCCc-cce-----ecCccccCCCCCCEEecCCCcccc----cccccccCCCCCcEEeecCCCCCCc-cccCCc
Q 044579 710 GKITELNLCDT-AIE-----EVPSSVECLTNLKELYLSRCSTLN----RLSTSICKLKSLHELILSDCLSLET-ITELPS 778 (1103)
Q Consensus 710 ~~L~~L~L~~~-~i~-----~lp~~~~~l~~L~~L~L~~~~~~~----~lp~~l~~l~~L~~L~L~~~~~l~~-i~~lp~ 778 (1103)
.+|++|+|++| .+. .+...+...++|++|+|++|.+.. .+...+...++|++|+|++|..... ...+..
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~ 115 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE 115 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence 35666777666 554 344556677888899998887653 2344555668899999988753321 112445
Q ss_pred cccCCCCCCeeec--cCCCCCCCCCC--CcccCCCCCCCEEeCCCCCcc
Q 044579 779 SFANLEGLEKLVL--VGCSKLNKLPH--SIDFCCLSSLQWLDLSGNNFE 823 (1103)
Q Consensus 779 ~~~~l~~L~~L~L--~~~~~~~~lp~--~~~~~~l~~L~~L~Ls~n~l~ 823 (1103)
.+...++|++|+| ++|.+...-.. ...+...++|++|+|++|.+.
T Consensus 116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 5677788999999 77775432100 122334578999999999876
No 231
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.31 E-value=0.0013 Score=82.03 Aligned_cols=154 Identities=15% Similarity=0.200 Sum_probs=87.0
Q ss_pred CCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhcc------CCceEEEEechhhhcccChHH
Q 044579 180 DLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRH------FQGKCFMANVREKANKMGVIH 253 (1103)
Q Consensus 180 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------F~~~~~~~~~~~~~~~~~~~~ 253 (1103)
..+.++||+.+++++.+.|... ....+.|+|.+|+||||+|+.++..+... ....++..+.....
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~------- 254 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLL------- 254 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC----------
T ss_pred CCCCccCCHHHHHHHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHh-------
Confidence 4467999999999999988743 23457899999999999999999876432 12233332211110
Q ss_pred HHHHHHHhhhCCCCcccccc-chHHHHHhh-cCCceEEEEeCCCCC---------HhH-HHHHhCCCCccCCCcEEEEEe
Q 044579 254 VRDEVISQVLGENLKIGTLI-VPQNIKKRL-QRVKVLIVLDDVNDE---------FTQ-LESLAGGVDRFSPGSRIVITT 321 (1103)
Q Consensus 254 ~~~~ll~~l~~~~~~~~~~~-~~~~l~~~L-~~k~~LlVLDdv~~~---------~~~-l~~l~~~~~~~~~gs~IIiTT 321 (1103)
.+... .+... ....+.+.+ ..++.+|++|+++.- ... ...+...+. ..+.++|.+|
T Consensus 255 ---------~~~~~-~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I~at 322 (758)
T 1r6b_X 255 ---------AGTKY-RGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGST 322 (758)
T ss_dssp ---------CCCCC-SSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEEEE
T ss_pred ---------ccccc-cchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEEEEe
Confidence 00000 00000 011122222 345789999999721 112 223333332 2345666666
Q ss_pred CchhhHhhc-------CcceEEEccCCChhHHHHHHHHhh
Q 044579 322 RDKQVLDKC-------GVSYIYKVKRLEHDNALELFCRKA 354 (1103)
Q Consensus 322 R~~~v~~~~-------~~~~~~~l~~L~~~ea~~Lf~~~a 354 (1103)
......... .....+.++.++.++..+++...+
T Consensus 323 ~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 323 TYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred CchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 544321110 112368999999999988887654
No 232
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.27 E-value=0.0017 Score=75.09 Aligned_cols=174 Identities=17% Similarity=0.201 Sum_probs=95.0
Q ss_pred CCCccccchhHHHHHHhhcc----------cCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccC
Q 044579 181 LDGLVGLNTRIEEMKSLLCL----------ESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMG 250 (1103)
Q Consensus 181 ~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 250 (1103)
.++++|.+..++++.++... +..-.+-|.|+|++|+|||+||++++.+....| +..+..+.....
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f----~~is~~~~~~~~- 89 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPF----FHISGSDFVELF- 89 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCE----EEEEGGGTTTCC-
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCe----eeCCHHHHHHHH-
Confidence 45688988887777665431 111123488999999999999999998764333 112221111110
Q ss_pred hHHHHHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCCC---------------HhHHHHHhCCCCcc--CC
Q 044579 251 VIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVNDE---------------FTQLESLAGGVDRF--SP 313 (1103)
Q Consensus 251 ~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~---------------~~~l~~l~~~~~~~--~~ 313 (1103)
.+ .........+.......+.+|+||+++.- ...+..+...+..+ ..
T Consensus 90 ------------~g----~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~ 153 (476)
T 2ce7_A 90 ------------VG----VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKE 153 (476)
T ss_dssp ------------TT----HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGG
T ss_pred ------------hc----ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCC
Confidence 00 00000001233334467899999999520 01122332222111 23
Q ss_pred CcEEEEEeCchhhHhh-----cCcceEEEccCCChhHHHHHHHHhhhccCCC-ChhHHHHHHHHHHHhCCCh
Q 044579 314 GSRIVITTRDKQVLDK-----CGVSYIYKVKRLEHDNALELFCRKAIRQNSR-SQDLLELSKEIVGYAKGNP 379 (1103)
Q Consensus 314 gs~IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~G~P 379 (1103)
+..||.||...+.+.. -..+..+.++..+.++-.+++..++-..... ..+ ...+++.+.|+.
T Consensus 154 ~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 154 GIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp TEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh----HHHHHHhcCCCc
Confidence 5677777776644321 1345688899999888888887766332211 111 234666777766
No 233
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.27 E-value=9.3e-05 Score=78.71 Aligned_cols=38 Identities=29% Similarity=0.254 Sum_probs=22.7
Q ss_pred cCCCCCCEEecCCCcccc--cccccccCCCCCcEEeecCC
Q 044579 730 ECLTNLKELYLSRCSTLN--RLSTSICKLKSLHELILSDC 767 (1103)
Q Consensus 730 ~~l~~L~~L~L~~~~~~~--~lp~~l~~l~~L~~L~L~~~ 767 (1103)
.++++|+.|+|++|.+.+ .+|..+..+++|+.|+|++|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N 206 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN 206 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC
Confidence 456677777777776654 34444555666666666654
No 234
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.26 E-value=0.0012 Score=72.12 Aligned_cols=48 Identities=17% Similarity=0.256 Sum_probs=37.5
Q ss_pred CCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHH
Q 044579 182 DGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 182 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
+.++|+...+.++.+.+..-......|.|+|.+|+|||++|+.+++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 358999999998887776432333467899999999999999999854
No 235
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.25 E-value=0.0027 Score=73.88 Aligned_cols=50 Identities=26% Similarity=0.314 Sum_probs=38.6
Q ss_pred CCCccccchhHHHHHHhhc---ccCCCeEEEEEeecCCChhHHHHHHHHHHHh
Q 044579 181 LDGLVGLNTRIEEMKSLLC---LESHDVRIVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 181 ~~~~vGr~~~~~~l~~~L~---~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
.+.++|.+..++.+..++. .+....+-+.++|++|+|||++|+++++...
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 4789999998887655443 2322335688999999999999999998765
No 236
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.23 E-value=0.0019 Score=80.39 Aligned_cols=150 Identities=15% Similarity=0.154 Sum_probs=83.9
Q ss_pred CCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccC------CceEEEEechhhhcccCh
Q 044579 178 STDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHF------QGKCFMANVREKANKMGV 251 (1103)
Q Consensus 178 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~~~~~~~~~~~~ 251 (1103)
+...+.+|||+.+++++...+.... ..-+.++|.+|+|||++|+.+++.+.... ...++..+. +
T Consensus 176 ~~~ld~iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~-------g- 245 (758)
T 3pxi_A 176 EDSLDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM-------G- 245 (758)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred hCCCCCccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-------c-
Confidence 3445679999999999999886432 33578999999999999999999864321 112221111 0
Q ss_pred HHHHHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCCCHhHHHHHhCCCCccCCCcEEEEEeCchhhHh---
Q 044579 252 IHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVNDEFTQLESLAGGVDRFSPGSRIVITTRDKQVLD--- 328 (1103)
Q Consensus 252 ~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~~l~~l~~~~~~~~~gs~IIiTTR~~~v~~--- 328 (1103)
....+ .........+......++.+|++|. ..+....+...+. ....++|.||.......
T Consensus 246 --------~~~~G----~~e~~l~~~~~~~~~~~~~iLfiD~---~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~ 308 (758)
T 3pxi_A 246 --------TKYRG----EFEDRLKKVMDEIRQAGNIILFIDA---AIDASNILKPSLA--RGELQCIGATTLDEYRKYIE 308 (758)
T ss_dssp -------------------CTTHHHHHHHHHTCCCCEEEECC-----------CCCTT--SSSCEEEEECCTTTTHHHHT
T ss_pred --------ccccc----hHHHHHHHHHHHHHhcCCEEEEEcC---chhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhh
Confidence 00000 0000111133333346788999992 3333344444443 23456666665443110
Q ss_pred ---hc-CcceEEEccCCChhHHHHHHHHhh
Q 044579 329 ---KC-GVSYIYKVKRLEHDNALELFCRKA 354 (1103)
Q Consensus 329 ---~~-~~~~~~~l~~L~~~ea~~Lf~~~a 354 (1103)
.. .....+.++.++.++..+++....
T Consensus 309 ~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 309 KDAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp TCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred ccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 00 112568999999999999998654
No 237
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.21 E-value=8.9e-05 Score=71.31 Aligned_cols=48 Identities=19% Similarity=0.095 Sum_probs=33.8
Q ss_pred CCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHH
Q 044579 182 DGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 182 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
-.++|++..++++.+.+..-.....-|.|+|.+|+|||++|+.+++..
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 357899999988887765321222357899999999999999988653
No 238
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.16 E-value=0.00018 Score=76.52 Aligned_cols=42 Identities=24% Similarity=0.351 Sum_probs=20.9
Q ss_pred CCCCCCEEeCCCCCccccCccccCCC--CCCEEeccCCcCCcccC
Q 044579 808 CLSSLQWLDLSGNNFESLPSSIKQLS--QLRKLDLSNCNMLLSLP 850 (1103)
Q Consensus 808 ~l~~L~~L~Ls~n~l~~lp~~i~~l~--~L~~L~L~~n~~l~~lp 850 (1103)
.+++|+.|+|++|.|+.+. .+..+. +|+.|+|++|++.+.+|
T Consensus 194 ~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 194 KAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccC
Confidence 3455555555555555442 222222 56666666666555444
No 239
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.14 E-value=0.002 Score=70.08 Aligned_cols=29 Identities=34% Similarity=0.625 Sum_probs=24.7
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHHHhcc
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQISRH 232 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (1103)
..+.+.++|++|+|||+||+++++.....
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~~ 63 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGIN 63 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 34678899999999999999999987443
No 240
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.98 E-value=0.0011 Score=63.88 Aligned_cols=36 Identities=17% Similarity=0.356 Sum_probs=27.3
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEE
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMA 240 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 240 (1103)
...++|+|..|.|||||++.++......-...+++.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~ 71 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYID 71 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Confidence 458999999999999999999997654311245554
No 241
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.93 E-value=0.0032 Score=77.09 Aligned_cols=173 Identities=16% Similarity=0.212 Sum_probs=94.8
Q ss_pred CCccccchhHHHHHHhhcc-----------cCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccC
Q 044579 182 DGLVGLNTRIEEMKSLLCL-----------ESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMG 250 (1103)
Q Consensus 182 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 250 (1103)
+++.|.++.+++|.+.+.. +-...+-|.++|++|.|||+||++++++.... .+..+..+....
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~----~~~v~~~~l~sk-- 277 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF----FFLINGPEIMSK-- 277 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCE----EEEEEHHHHHSS--
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCe----EEEEEhHHhhcc--
Confidence 5678999999888876541 12335779999999999999999999865433 233222111111
Q ss_pred hHHHHHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCCCH------------hHHHHHhCCCCcc--CCCcE
Q 044579 251 VIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVNDEF------------TQLESLAGGVDRF--SPGSR 316 (1103)
Q Consensus 251 ~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~------------~~l~~l~~~~~~~--~~gs~ 316 (1103)
..+ .........+.......+.+|++|+++.-. .....+...++.. ..+..
T Consensus 278 -----------~~g----ese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~ 342 (806)
T 3cf2_A 278 -----------LAG----ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp -----------CTT----HHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEE
T ss_pred -----------cch----HHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEE
Confidence 000 000000012223335668999999996200 0122222221111 12344
Q ss_pred EEEEeCchhhHh-----hcCcceEEEccCCChhHHHHHHHHhhhccCC-CChhHHHHHHHHHHHhCCCh
Q 044579 317 IVITTRDKQVLD-----KCGVSYIYKVKRLEHDNALELFCRKAIRQNS-RSQDLLELSKEIVGYAKGNP 379 (1103)
Q Consensus 317 IIiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~i~~~~~G~P 379 (1103)
||.||...+.+. ....+..++++..+.++-.++|..+.-+... ...+ ...+++.+.|.-
T Consensus 343 VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHV 407 (806)
T ss_dssp EEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCC----HHHHHHHCCSCC
T ss_pred EEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhcCCCC
Confidence 555665443221 1235678999999999999999876532211 1112 245666666654
No 242
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.93 E-value=0.0087 Score=63.51 Aligned_cols=153 Identities=16% Similarity=0.227 Sum_probs=78.4
Q ss_pred CCCCccccchhHHHHHHhhcc--c--------CCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhccc
Q 044579 180 DLDGLVGLNTRIEEMKSLLCL--E--------SHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKM 249 (1103)
Q Consensus 180 ~~~~~vGr~~~~~~l~~~L~~--~--------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 249 (1103)
..++++|.+....++..+... . -.-.+-+.|+|.+|+||||||+.++..... ..+.+. ....
T Consensus 14 ~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~---~~i~~~-~~~~---- 85 (254)
T 1ixz_A 14 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---PFITAS-GSDF---- 85 (254)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTC---CEEEEE-HHHH----
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC---CEEEee-HHHH----
Confidence 345678877766666544321 0 001123899999999999999999987642 223332 1110
Q ss_pred ChHHHHHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCCCHh----------------HHHHHhCCCCcc--
Q 044579 250 GVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVNDEFT----------------QLESLAGGVDRF-- 311 (1103)
Q Consensus 250 ~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~----------------~l~~l~~~~~~~-- 311 (1103)
.....+ .........++..-...+.++++|+++ ... .+..+...+...
T Consensus 86 ---------~~~~~~----~~~~~i~~~~~~~~~~~~~i~~~Deid-~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~ 151 (254)
T 1ixz_A 86 ---------VEMFVG----VGAARVRDLFETAKRHAPCIVFIDEID-AVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 151 (254)
T ss_dssp ---------HHSCTT----HHHHHHHHHHHHHTTSSSEEEEEETHH-HHHC---------CHHHHHHHHHHHHHHHTCCT
T ss_pred ---------HHHHhh----HHHHHHHHHHHHHHhcCCeEEEehhhh-hhhcccCccccccchHHHHHHHHHHHHHhCCCC
Confidence 000000 000000001222112346899999994 110 112222111111
Q ss_pred CCCcEEEEEeCchhhHhh-----cCcceEEEccCCChhHHHHHHHHhh
Q 044579 312 SPGSRIVITTRDKQVLDK-----CGVSYIYKVKRLEHDNALELFCRKA 354 (1103)
Q Consensus 312 ~~gs~IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a 354 (1103)
.....++.||..+..+.. ...+..++++..+.++-.+++..++
T Consensus 152 ~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 199 (254)
T 1ixz_A 152 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 199 (254)
T ss_dssp TCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHH
T ss_pred CCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHH
Confidence 122345556666554321 1345688999999988888887665
No 243
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.83 E-value=0.0037 Score=77.85 Aligned_cols=151 Identities=13% Similarity=0.156 Sum_probs=82.3
Q ss_pred CCccccchhHHHHHHhhcccC-------CCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHH
Q 044579 182 DGLVGLNTRIEEMKSLLCLES-------HDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHV 254 (1103)
Q Consensus 182 ~~~vGr~~~~~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~ 254 (1103)
..++|.+..++.+...+.... .....+.++|++|+|||++|+++++.....-...+.+. ..+........
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~-~s~~~~~~~~~-- 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRID-MSEYMEKHSTS-- 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEE-GGGGCSSCCCC--
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEe-chhcccccccc--
Confidence 468899998888877665221 12337999999999999999999987643323333333 32222111110
Q ss_pred HHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCCC-HhHHHHHhCCCCc-----------cCCCcEEEEEeC
Q 044579 255 RDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVNDE-FTQLESLAGGVDR-----------FSPGSRIVITTR 322 (1103)
Q Consensus 255 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~-~~~l~~l~~~~~~-----------~~~gs~IIiTTR 322 (1103)
.......+++ ...-+|+||+++.- .+....|...+.. .....+||+||.
T Consensus 568 ----------------~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 568 ----------------GGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628 (758)
T ss_dssp -------------------CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred ----------------cchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence 0000012221 23458999999632 2223333221111 123568888887
Q ss_pred ch-----hh----Hhh------cCcceEEEccCCChhHHHHHHHHhh
Q 044579 323 DK-----QV----LDK------CGVSYIYKVKRLEHDNALELFCRKA 354 (1103)
Q Consensus 323 ~~-----~v----~~~------~~~~~~~~l~~L~~~ea~~Lf~~~a 354 (1103)
.. .+ ... ...+.++.+.+++.++..+++....
T Consensus 629 ~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 629 VGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp SSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 31 00 000 1334688899999988888776544
No 244
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=96.82 E-value=0.0014 Score=58.82 Aligned_cols=72 Identities=10% Similarity=0.092 Sum_probs=51.1
Q ss_pred CcccEEEcCccccccCchHHHHHHHHHhCCCeEEeeCccccCCCcchHHHHHHHhhcceEEEEecCCccCchhhHHHHHH
Q 044579 8 SKYEVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELKKGDEISPALSNAIESSDISIIIFSKGYASSRWCLNELVK 87 (1103)
Q Consensus 8 ~~~dvfis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~wc~~El~~ 87 (1103)
.+|.+||||+.+| . .+.|...|.+.|+.. .| +.|+.|...||+.++..+.|+||..|+..
T Consensus 3 ~~~~lFISh~~~d-~---~~~L~~~l~~~~f~~-~~---------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~ 62 (111)
T 1eiw_A 3 AEIRLYITEGEVE-D---YRVFLERLEQSGLEW-RP---------------ATPEDADAVIVLAGLWGTRRDEILGAVDL 62 (111)
T ss_dssp CCEEEEECCCCSH-H---HHHHHHHHHHHCSCE-EE---------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHH
T ss_pred ceEEEEEecccHh-H---HHHHHHHHhCCCCee-ec---------------CccccCCEEEEEeCCCcCCChHHHHHHHH
Confidence 4799999999999 2 334444444556632 23 56888999999999999999999999765
Q ss_pred HHHhhhcCCcEEEEEE
Q 044579 88 ILDCKKMNAQIVIPVF 103 (1103)
Q Consensus 88 ~~~~~~~~~~~v~pif 103 (1103)
+.+ .+..++-|.
T Consensus 63 A~~----~gkpIigV~ 74 (111)
T 1eiw_A 63 ARK----SSKPIITVR 74 (111)
T ss_dssp HTT----TTCCEEEEC
T ss_pred HHH----cCCCEEEEE
Confidence 543 344455553
No 245
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.80 E-value=0.0058 Score=65.89 Aligned_cols=154 Identities=16% Similarity=0.214 Sum_probs=79.7
Q ss_pred CCCCCccccchhHHHHHHhhccc----------CCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcc
Q 044579 179 TDLDGLVGLNTRIEEMKSLLCLE----------SHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANK 248 (1103)
Q Consensus 179 ~~~~~~vGr~~~~~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~ 248 (1103)
...++++|.+...+++..+...- -.-.+-+.|+|.+|+||||||+.++..... ..+.+. .....
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~---~~i~~~-~~~~~-- 110 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---PFITAS-GSDFV-- 110 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTC---CEEEEE-HHHHH--
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCC---CEEEec-HHHHH--
Confidence 33466788887776665543310 001123899999999999999999987642 223332 11100
Q ss_pred cChHHHHHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCCCH----------------hHHHHHhCCCCcc-
Q 044579 249 MGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVNDEF----------------TQLESLAGGVDRF- 311 (1103)
Q Consensus 249 ~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~----------------~~l~~l~~~~~~~- 311 (1103)
....+ .........++..-...+.++|+|+++ .. ..+..+...+...
T Consensus 111 -----------~~~~~----~~~~~i~~~~~~~~~~~~~i~~iDeid-~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~ 174 (278)
T 1iy2_A 111 -----------EMFVG----VGAARVRDLFETAKRHAPCIVFIDEID-AVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 174 (278)
T ss_dssp -----------HSTTT----HHHHHHHHHHHHHHTSCSEEEEEETHH-HHHCC--------CHHHHHHHHHHHHHHTTCC
T ss_pred -----------HHHhh----HHHHHHHHHHHHHHhcCCcEEehhhhH-hhhcccccccCCcchHHHHHHHHHHHHHhCCC
Confidence 00000 000000001222222356899999984 11 1122222222111
Q ss_pred -CCCcEEEEEeCchhhHh-----hcCcceEEEccCCChhHHHHHHHHhh
Q 044579 312 -SPGSRIVITTRDKQVLD-----KCGVSYIYKVKRLEHDNALELFCRKA 354 (1103)
Q Consensus 312 -~~gs~IIiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a 354 (1103)
.....++.||..++++. .......++++..+.++-.+++..++
T Consensus 175 ~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 223 (278)
T 1iy2_A 175 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 223 (278)
T ss_dssp TTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHH
T ss_pred CCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHH
Confidence 12234555666554432 12345688999999988888887665
No 246
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.64 E-value=0.0052 Score=76.49 Aligned_cols=153 Identities=17% Similarity=0.231 Sum_probs=85.4
Q ss_pred CCCCccccchhHHHHHHhhcc-----------cCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcc
Q 044579 180 DLDGLVGLNTRIEEMKSLLCL-----------ESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANK 248 (1103)
Q Consensus 180 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~ 248 (1103)
..++++|.+..+++|.+++.. +-.....|.|+|.+|+||||||+.++......| +.+. ..+....
T Consensus 202 ~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~---i~v~-~~~l~~~ 277 (806)
T 1ypw_A 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLIN-GPEIMSK 277 (806)
T ss_dssp CGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEE---EEEE-HHHHSSS
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcE---EEEE-chHhhhh
Confidence 346799999999999887752 223345799999999999999999988654333 2222 1111100
Q ss_pred cChHHHHHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCCCH---------------hHHHHHhCCCCccCC
Q 044579 249 MGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVNDEF---------------TQLESLAGGVDRFSP 313 (1103)
Q Consensus 249 ~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~---------------~~l~~l~~~~~~~~~ 313 (1103)
............+.......+.++++|+++.-. .++-.+...... ..
T Consensus 278 -----------------~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~-~~ 339 (806)
T 1ypw_A 278 -----------------LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ-RA 339 (806)
T ss_dssp -----------------STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCT-TS
T ss_pred -----------------hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcc-cc
Confidence 000000000112233334467899999994110 112122222211 23
Q ss_pred CcEEEEEeCchhhHhh-c----CcceEEEccCCChhHHHHHHHHhh
Q 044579 314 GSRIVITTRDKQVLDK-C----GVSYIYKVKRLEHDNALELFCRKA 354 (1103)
Q Consensus 314 gs~IIiTTR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~a 354 (1103)
+..+|.||.....+.. . .....+.+...+.++-.+++..++
T Consensus 340 ~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp CCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred cEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 4566666665432211 1 234567888888888888887665
No 247
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.62 E-value=0.013 Score=68.15 Aligned_cols=150 Identities=15% Similarity=0.207 Sum_probs=82.0
Q ss_pred CCCCccccchhHHHHHHhhcc--c--------CCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhccc
Q 044579 180 DLDGLVGLNTRIEEMKSLLCL--E--------SHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKM 249 (1103)
Q Consensus 180 ~~~~~vGr~~~~~~l~~~L~~--~--------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 249 (1103)
..++++|.+..++++.++... . -.-.+-+.|+|++|+||||||++++...... .+.+. ..+.....
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~---~i~i~-g~~~~~~~ 104 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP---FITAS-GSDFVEMF 104 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCC---EEEEE-GGGGTSSC
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---EEEEe-hhHHHHhh
Confidence 346788888877776655431 0 0112238999999999999999999876422 22232 11111100
Q ss_pred ChHHHHHHHHHhhhCCCCccccccchHHHHHhhc----CCceEEEEeCCCCC-----------H----hHHHHHhCCCCc
Q 044579 250 GVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQ----RVKVLIVLDDVNDE-----------F----TQLESLAGGVDR 310 (1103)
Q Consensus 250 ~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~----~k~~LlVLDdv~~~-----------~----~~l~~l~~~~~~ 310 (1103)
. .. ....++..++ ..+.++++|+++.- . ..+..+...+..
T Consensus 105 -~-g~-------------------~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg 163 (499)
T 2dhr_A 105 -V-GV-------------------GAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG 163 (499)
T ss_dssp -T-TH-------------------HHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGG
T ss_pred -h-hh-------------------HHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcc
Confidence 0 00 0012222221 23579999999521 0 112233222221
Q ss_pred c--CCCcEEEEEeCchhhHhh-----cCcceEEEccCCChhHHHHHHHHhh
Q 044579 311 F--SPGSRIVITTRDKQVLDK-----CGVSYIYKVKRLEHDNALELFCRKA 354 (1103)
Q Consensus 311 ~--~~gs~IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a 354 (1103)
+ ..+..|+.||..+..+.. ...+..+.++..+.++-.+++..++
T Consensus 164 ~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~ 214 (499)
T 2dhr_A 164 FEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 214 (499)
T ss_dssp CCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTT
T ss_pred cccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHH
Confidence 1 233456666666654321 1345688999999998889887765
No 248
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.56 E-value=0.019 Score=61.53 Aligned_cols=126 Identities=17% Similarity=0.134 Sum_probs=67.5
Q ss_pred EEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHHHHHHhhhCCCCccccccchHHHHHhhcCCce
Q 044579 208 VGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKV 287 (1103)
Q Consensus 208 v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~ 287 (1103)
++|+|++|.||||||+.++...... .+.+. ..+.... ..... ...+.. .....-...+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~~---~i~i~-g~~l~~~-~~~~~-~~~i~~---------------vf~~a~~~~p~ 105 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGLN---FISVK-GPELLNM-YVGES-ERAVRQ---------------VFQRAKNSAPC 105 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTCE---EEEEE-TTTTCSS-TTHHH-HHHHHH---------------HHHHHHHTCSE
T ss_pred EEEECCCCCcHHHHHHHHHHHcCCC---EEEEE-cHHHHhh-hhhHH-HHHHHH---------------HHHHHHhcCCC
Confidence 9999999999999999999875432 23332 1111000 00000 000100 11111123578
Q ss_pred EEEEeCCCCCH------------hHHHHHhCCCCc--cCCCcEEEEEeCchhhHhh-----cCcceEEEccCCChhHHHH
Q 044579 288 LIVLDDVNDEF------------TQLESLAGGVDR--FSPGSRIVITTRDKQVLDK-----CGVSYIYKVKRLEHDNALE 348 (1103)
Q Consensus 288 LlVLDdv~~~~------------~~l~~l~~~~~~--~~~gs~IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~ 348 (1103)
++++|+++.-. .....+...+.. .....-++.+|..++++.. ...+..+.++..+.++-.+
T Consensus 106 i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~ 185 (274)
T 2x8a_A 106 VIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLA 185 (274)
T ss_dssp EEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHH
T ss_pred eEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHH
Confidence 89999986210 001111111110 1223456667776655432 1456788999999999999
Q ss_pred HHHHhh
Q 044579 349 LFCRKA 354 (1103)
Q Consensus 349 Lf~~~a 354 (1103)
++..+.
T Consensus 186 il~~~~ 191 (274)
T 2x8a_A 186 ILKTIT 191 (274)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 988765
No 249
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.56 E-value=0.06 Score=63.73 Aligned_cols=50 Identities=28% Similarity=0.420 Sum_probs=35.4
Q ss_pred ccccchhHHHHHHhhcc----cCCCeEEEEEeecCCChhHHHHHHHHHHHhccC
Q 044579 184 LVGLNTRIEEMKSLLCL----ESHDVRIVGIWGMGGIGKTTIASVVFHQISRHF 233 (1103)
Q Consensus 184 ~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 233 (1103)
++|.+.-.+.+.+.+.. .......+.++|++|+||||||+.++......|
T Consensus 83 i~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~ 136 (543)
T 3m6a_A 83 HHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKF 136 (543)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEE
T ss_pred hccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCe
Confidence 67777766666443321 111345899999999999999999998775443
No 250
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.35 E-value=0.0074 Score=75.25 Aligned_cols=48 Identities=19% Similarity=0.247 Sum_probs=37.3
Q ss_pred CCccccchhHHHHHHhhccc-------CCCeEEEEEeecCCChhHHHHHHHHHHH
Q 044579 182 DGLVGLNTRIEEMKSLLCLE-------SHDVRIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 182 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
..++|.+..++.+...+... ......+.++|.+|+|||++|+.+++..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 45889998888877666521 1123478999999999999999999877
No 251
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.04 E-value=0.016 Score=63.34 Aligned_cols=36 Identities=19% Similarity=0.343 Sum_probs=28.4
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHh-ccCCceEEEE
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQIS-RHFQGKCFMA 240 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~~~ 240 (1103)
...+.|+|.+|+|||+||+++++... .+-..+.++.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 46788999999999999999999876 5444455554
No 252
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.49 E-value=0.01 Score=59.15 Aligned_cols=35 Identities=23% Similarity=0.145 Sum_probs=26.5
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHhccCCceEEEE
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMA 240 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 240 (1103)
..|.|++-.|.||||.|-.++-+...+=-.+.++.
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQ 63 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQ 63 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 46677777779999999999988766655566664
No 253
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.46 E-value=0.016 Score=72.90 Aligned_cols=49 Identities=18% Similarity=0.272 Sum_probs=37.7
Q ss_pred CccccchhHHHHHHhhccc-------CCCeEEEEEeecCCChhHHHHHHHHHHHhc
Q 044579 183 GLVGLNTRIEEMKSLLCLE-------SHDVRIVGIWGMGGIGKTTIASVVFHQISR 231 (1103)
Q Consensus 183 ~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (1103)
.++|.+..++.+...+... ......+.|+|.+|+|||++|+.+++....
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4789998888887766521 112357899999999999999999987643
No 254
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=95.35 E-value=0.051 Score=52.20 Aligned_cols=92 Identities=17% Similarity=0.170 Sum_probs=69.8
Q ss_pred cccEEEcC--------------ccccccCchHHHHHHHHHhCCCeEEeeCcccc-------C-CCcchHHHHHHHhhcce
Q 044579 9 KYEVFLSF--------------RGEDTRNGFTSHLAAALHRKQIQFFIDDEELK-------K-GDEISPALSNAIESSDI 66 (1103)
Q Consensus 9 ~~dvfis~--------------~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~-------~-g~~~~~~~~~~i~~s~~ 66 (1103)
+--+|+.| +.+|.+ ..+-|...-....+-.|.|.++.. . -+.|.+.|.++|..|+.
T Consensus 5 rn~~YvaF~~~~~~~~~~~~~~a~~Di~--yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~ 82 (189)
T 3hyn_A 5 QNANYSAFYVSEPFSESNLGANSTHDFV--YYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKN 82 (189)
T ss_dssp CCEEEEECCCCSSCCTTSTTGGGSTTHH--HHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEE
T ss_pred ccCcEEEEeccCcccccccCCCccchHH--HHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCc
Confidence 33589999 556655 777887777777777788875442 2 34688899999999999
Q ss_pred EEEEecCCccCchhhHHHHHHHHHhhhcCCcEEEEEEee
Q 044579 67 SIIIFSKGYASSRWCLNELVKILDCKKMNAQIVIPVFYQ 105 (1103)
Q Consensus 67 ~i~v~S~~y~~s~wc~~El~~~~~~~~~~~~~v~pif~~ 105 (1103)
.|+++|++...|.|-..|+..+++ +.+..||-|.-+
T Consensus 83 vIllIs~~T~~s~~v~wEIe~Ai~---~~~~PII~Vy~~ 118 (189)
T 3hyn_A 83 IILFLSSITANSRALREEMNYGIG---TKGLPVIVIYPD 118 (189)
T ss_dssp EEEECCTTCCCCHHHHHHHHHHTT---TTCCCEEEEETT
T ss_pred EEEEEecCccccchhHHHHHHHHH---hcCCcEEEEECC
Confidence 999999999999999999887772 234557766543
No 255
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.31 E-value=0.14 Score=56.76 Aligned_cols=156 Identities=10% Similarity=-0.025 Sum_probs=95.5
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHHHh-ccCCceEEEEechhhhcccChHHHHHHHHHhhhCCCCccccccchHHHHHhh
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQIS-RHFQGKCFMANVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRL 282 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L 282 (1103)
-.++..++|..|.||++.|+.+...+. ..|+....+. + ....++..+...+-. .-+
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~-~---~~~~~~~~l~~~~~~-------------------~pl 73 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS-I---DPNTDWNAIFSLCQA-------------------MSL 73 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE-C---CTTCCHHHHHHHHHH-------------------HHH
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE-e---cCCCCHHHHHHHhcC-------------------cCC
Confidence 356899999999999999999998654 3443321111 1 112333333222111 112
Q ss_pred cCCceEEEEeCCCC--CHhHHHHHhCCCCccCCCcEEEEEeCc-------hhhHhhc-CcceEEEccCCChhHHHHHHHH
Q 044579 283 QRVKVLIVLDDVND--EFTQLESLAGGVDRFSPGSRIVITTRD-------KQVLDKC-GVSYIYKVKRLEHDNALELFCR 352 (1103)
Q Consensus 283 ~~k~~LlVLDdv~~--~~~~l~~l~~~~~~~~~gs~IIiTTR~-------~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~ 352 (1103)
-+++-++|+|+++. .....+.+...+....+++.+|+++.. ..+.... .....++..+++.++..+.+..
T Consensus 74 f~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~ 153 (343)
T 1jr3_D 74 FASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAA 153 (343)
T ss_dssp CCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHH
Confidence 34567888999863 334555555544444567887777643 2344332 3446889999999999988887
Q ss_pred hhhccCCCChhHHHHHHHHHHHhCCChhHHHH
Q 044579 353 KAIRQNSRSQDLLELSKEIVGYAKGNPLALEV 384 (1103)
Q Consensus 353 ~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 384 (1103)
.+-..+.. -..+.+..+++.++|...++..
T Consensus 154 ~~~~~g~~--i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 154 RAKQLNLE--LDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHHTTCE--ECHHHHHHHHHSSTTCHHHHHH
T ss_pred HHHHcCCC--CCHHHHHHHHHHhchHHHHHHH
Confidence 76433221 1235677888899998877654
No 256
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.14 E-value=0.013 Score=63.15 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=21.5
Q ss_pred eEEEEEeecCCChhHHHHHHHHHH
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQ 228 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~ 228 (1103)
.+++.|+|++|+||||||.+++..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 357789999999999999999876
No 257
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.03 E-value=0.05 Score=55.96 Aligned_cols=46 Identities=20% Similarity=0.099 Sum_probs=30.9
Q ss_pred HHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEE
Q 044579 192 EEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMA 240 (1103)
Q Consensus 192 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 240 (1103)
..|..++..+-..-.+++|.|.+|+||||||+.++. ..-..++|+.
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~ 52 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVD 52 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEE
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEE
Confidence 344444432222345899999999999999999987 2223456665
No 258
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.85 E-value=0.065 Score=56.22 Aligned_cols=27 Identities=19% Similarity=0.010 Sum_probs=23.4
Q ss_pred CCeEEEEEeecCCChhHHHHHHHHHHH
Q 044579 203 HDVRIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
.....|+|.|++|+||||+|+.+.+++
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 345689999999999999999998765
No 259
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.77 E-value=0.036 Score=67.87 Aligned_cols=152 Identities=16% Similarity=0.260 Sum_probs=76.6
Q ss_pred CCccccchhHHHHHHhhcc-----------cCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccC
Q 044579 182 DGLVGLNTRIEEMKSLLCL-----------ESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMG 250 (1103)
Q Consensus 182 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 250 (1103)
..+.|.++..++|.+.+.. +....+-|.++|++|.|||.+|++++......| +. +.
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f-----~~-v~------- 543 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF-----IS-IK------- 543 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEE-----EE-CC-------
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCce-----EE-ec-------
Confidence 4567888888887766541 112245588999999999999999998764332 22 10
Q ss_pred hHHHHHHHHHhhhCCCCccccccchHHHHHhhcCCceEEEEeCCCCCH--------h-------HHHHHhCCCCccCC--
Q 044579 251 VIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRVKVLIVLDDVNDEF--------T-------QLESLAGGVDRFSP-- 313 (1103)
Q Consensus 251 ~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~--------~-------~l~~l~~~~~~~~~-- 313 (1103)
..+++....++. .....+.+...-+..+.+|++|+++.-. . .+..|+..++....
T Consensus 544 ----~~~l~s~~vGes----e~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~ 615 (806)
T 3cf2_A 544 ----GPELLTMWFGES----EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 615 (806)
T ss_dssp ----HHHHHTTTCSSC----HHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSS
T ss_pred ----cchhhccccchH----HHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCC
Confidence 012222222211 1001112222224568999999996200 0 12223222222222
Q ss_pred CcEEEEEeCchhh-----HhhcCcceEEEccCCChhHHHHHHHHhh
Q 044579 314 GSRIVITTRDKQV-----LDKCGVSYIYKVKRLEHDNALELFCRKA 354 (1103)
Q Consensus 314 gs~IIiTTR~~~v-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 354 (1103)
+.-||-||-.++. +..-..+..+.++..+.++-.++|..+.
T Consensus 616 ~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 616 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp SEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred CEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence 2233335543322 2222456788888888877788886655
No 260
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.71 E-value=0.043 Score=55.81 Aligned_cols=89 Identities=17% Similarity=0.185 Sum_probs=47.1
Q ss_pred EEEEeecCCChhHHHHHHHHHHHhccCCceEEEEe---chhhhc-ccChHHHHHHHHHhhhCCCCccccccchHHHHHhh
Q 044579 207 IVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMAN---VREKAN-KMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRL 282 (1103)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~---~~~~~~-~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L 282 (1103)
+|.|.|++|+||||.|+.++.++ . ...+.. +|+... ...+-...+..+.. ..-..+......+.+++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~----g-~~~istGdllR~~i~~~t~lg~~~~~~~~~----G~lvpd~iv~~lv~~~l 72 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK----G-FVHISTGDILREAVQKGTPLGKKAKEYMER----GELVPDDLIIALIEEVF 72 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH----C-CEEEEHHHHHHHHHHHTCHHHHHHHHHHHH----TCCCCHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHH----C-CeEEcHHHHHHHHHHhcChhhhhHHHHHhc----CCcCCHHHHHHHHHHhh
Confidence 57789999999999999998765 1 122320 111100 11111111111111 11111212223677777
Q ss_pred cCCceEEEEeCCCCCHhHHHHHh
Q 044579 283 QRVKVLIVLDDVNDEFTQLESLA 305 (1103)
Q Consensus 283 ~~k~~LlVLDdv~~~~~~l~~l~ 305 (1103)
..... +|||+.-....|.+.|.
T Consensus 73 ~~~~~-~ilDGfPRt~~Qa~~l~ 94 (206)
T 3sr0_A 73 PKHGN-VIFDGFPRTVKQAEALD 94 (206)
T ss_dssp CSSSC-EEEESCCCSHHHHHHHH
T ss_pred ccCCc-eEecCCchhHHHHHHHH
Confidence 65554 68999976777776653
No 261
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.70 E-value=0.16 Score=56.11 Aligned_cols=54 Identities=22% Similarity=0.153 Sum_probs=39.2
Q ss_pred cchhHHHHHHhhc-ccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEE
Q 044579 187 LNTRIEEMKSLLC-LESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMA 240 (1103)
Q Consensus 187 r~~~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 240 (1103)
...-...|...|. .+-..-+++.|+|.+|+||||||..++......-..++|+.
T Consensus 42 i~TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 42 IPTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp ECCSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ecCCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 3444567777775 33334579999999999999999999987655434466765
No 262
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.67 E-value=0.014 Score=57.94 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=22.5
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHh
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
.+|.|.|++|+||||+|+++.+++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4789999999999999999998764
No 263
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.65 E-value=0.018 Score=56.80 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=18.8
Q ss_pred eEEEEEeecCCChhHHHHHHH
Q 044579 205 VRIVGIWGMGGIGKTTIASVV 225 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v 225 (1103)
..+++|+|..|+|||||++.+
T Consensus 9 gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 368999999999999999963
No 264
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.60 E-value=0.032 Score=61.68 Aligned_cols=47 Identities=17% Similarity=0.229 Sum_probs=38.5
Q ss_pred CCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhcc
Q 044579 182 DGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRH 232 (1103)
Q Consensus 182 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (1103)
+.++|++..++.+...+..+ ..+.++|.+|+|||+||+.+++.....
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~~~~~~ 73 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAKTMDLD 73 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHHHTTCC
T ss_pred cceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 46899999988887777543 258899999999999999999876543
No 265
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.58 E-value=0.033 Score=56.94 Aligned_cols=28 Identities=25% Similarity=0.407 Sum_probs=24.5
Q ss_pred CCeEEEEEeecCCChhHHHHHHHHHHHh
Q 044579 203 HDVRIVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
....+|+|.|..|.|||||++.+...+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457999999999999999999998765
No 266
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=94.43 E-value=0.061 Score=56.47 Aligned_cols=38 Identities=18% Similarity=0.237 Sum_probs=28.6
Q ss_pred HHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHH
Q 044579 192 EEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 192 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
..+..++....+....+.++|++|.|||.+|.++++..
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 34566665432445579999999999999999999853
No 267
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.38 E-value=0.026 Score=56.35 Aligned_cols=26 Identities=23% Similarity=0.019 Sum_probs=21.7
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHhc
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQISR 231 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (1103)
+++.|+|..|+||||+|..++.+...
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~ 29 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKL 29 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 47889999999999999887776543
No 268
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.37 E-value=0.065 Score=54.83 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=24.2
Q ss_pred CCeEEEEEeecCCChhHHHHHHHHHHH
Q 044579 203 HDVRIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
...++|.|.|++|+||||.|+.+++++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999999865
No 269
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.35 E-value=0.017 Score=64.20 Aligned_cols=110 Identities=13% Similarity=0.174 Sum_probs=63.2
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHhccCCceEE-EEechhhhcccChHHHHHHHHHhhhCCCCccccccchHHHHHhhcC
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQISRHFQGKCF-MANVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQR 284 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~-~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~ 284 (1103)
.+++|.|+.|.||||+.+.+...+.......++ +.+..+....... ..+.+ .............+...|..
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~-----~~v~q---~~~~~~~~~~~~~La~aL~~ 195 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKK-----CLVNQ---REVHRDTLGFSEALRSALRE 195 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSS-----SEEEE---EEBTTTBSCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccc-----cceee---eeeccccCCHHHHHHHHhhh
Confidence 489999999999999999999876554333332 2221110000000 00000 00001111222378888999
Q ss_pred CceEEEEeCCCCCHhHHHHHhCCCCccCCCcEEEEEeCchhhH
Q 044579 285 VKVLIVLDDVNDEFTQLESLAGGVDRFSPGSRIVITTRDKQVL 327 (1103)
Q Consensus 285 k~~LlVLDdv~~~~~~l~~l~~~~~~~~~gs~IIiTTR~~~v~ 327 (1103)
.+=+|++|.+- +.+.++.+... ...|..||+||-+...+
T Consensus 196 ~PdvillDEp~-d~e~~~~~~~~---~~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 196 DPDIILVGEMR-DLETIRLALTA---AETGHLVFGTLHTTSAA 234 (356)
T ss_dssp CCSEEEESCCC-SHHHHHHHHHH---HHTTCEEEEEESCSSHH
T ss_pred CcCEEecCCCC-CHHHHHHHHHH---HhcCCEEEEEEccChHH
Confidence 99999999997 55555543322 13466789998876544
No 270
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.33 E-value=0.052 Score=55.08 Aligned_cols=43 Identities=23% Similarity=0.343 Sum_probs=30.2
Q ss_pred chhHHHHHHhhcc-cCCCeEEEEEeecCCChhHHHHHHHHHHHh
Q 044579 188 NTRIEEMKSLLCL-ESHDVRIVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 188 ~~~~~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
++.++++.+.+.. ......+|+|.|..|+||||+++.+...+.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 4 RDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3344445444432 223457999999999999999999988664
No 271
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.28 E-value=0.027 Score=63.24 Aligned_cols=47 Identities=15% Similarity=0.159 Sum_probs=34.0
Q ss_pred ccccchhHHHHHHhhc-------------ccCCCeEEEEEeecCCChhHHHHHHHHHHHh
Q 044579 184 LVGLNTRIEEMKSLLC-------------LESHDVRIVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 184 ~vGr~~~~~~l~~~L~-------------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
++|.+..++.+...+. ......+.|.++|++|+|||++|+++++...
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5777777777666552 1111235688999999999999999998763
No 272
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.28 E-value=0.55 Score=53.24 Aligned_cols=36 Identities=19% Similarity=0.181 Sum_probs=28.2
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEE
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFM 239 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 239 (1103)
...+|.++|.+|+||||++..++..++.+-..+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv 134 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVV 134 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 368999999999999999999998776553333333
No 273
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.24 E-value=0.022 Score=58.59 Aligned_cols=110 Identities=17% Similarity=0.045 Sum_probs=57.9
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHHHHHHhhhCCCCccccccchH----HHHH
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQ----NIKK 280 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~----~l~~ 280 (1103)
-.++.|+|..|+||||++..++.+...+-..+..+....+. . +. .++.+++ +-........... .+.+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~--r-~~----~~i~srl-G~~~~~~~~~~~~~i~~~i~~ 83 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDT--R-SI----RNIQSRT-GTSLPSVEVESAPEILNYIMS 83 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCG--G-GC----SSCCCCC-CCSSCCEEESSTHHHHHHHHS
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCc--h-HH----HHHHHhc-CCCccccccCCHHHHHHHHHH
Confidence 46899999999999999999999876665445544311110 0 10 1122222 1111100111111 2333
Q ss_pred hhcCC-ceEEEEeCCCC-CHhHHHHHhCCCCccCCCcEEEEEeCchh
Q 044579 281 RLQRV-KVLIVLDDVND-EFTQLESLAGGVDRFSPGSRIVITTRDKQ 325 (1103)
Q Consensus 281 ~L~~k-~~LlVLDdv~~-~~~~l~~l~~~~~~~~~gs~IIiTTR~~~ 325 (1103)
.+.+. .-+||+|.+.. ..++++.+.... ..|..||+|-++.+
T Consensus 84 ~~~~~~~dvViIDEaQ~l~~~~ve~l~~L~---~~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 84 NSFNDETKVIGIDEVQFFDDRICEVANILA---ENGFVVIISGLDKN 127 (223)
T ss_dssp TTSCTTCCEEEECSGGGSCTHHHHHHHHHH---HTTCEEEEECCSBC
T ss_pred HhhCCCCCEEEEecCccCcHHHHHHHHHHH---hCCCeEEEEecccc
Confidence 33333 45999999852 234444432211 13788999999543
No 274
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.23 E-value=0.022 Score=56.04 Aligned_cols=25 Identities=16% Similarity=0.162 Sum_probs=22.3
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHh
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
.+|+|.|+.|+||||+|+.++.++.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3789999999999999999998764
No 275
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.20 E-value=0.12 Score=56.63 Aligned_cols=70 Identities=17% Similarity=0.132 Sum_probs=45.7
Q ss_pred cccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHHHHHHh
Q 044579 185 VGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRDEVISQ 261 (1103)
Q Consensus 185 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 261 (1103)
.|...-+..|..++ .+-..-.++.|.|.+|+||||+|..++.....+-..++|+. -.....++...+++.
T Consensus 49 ~~i~TG~~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s------lE~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 49 TGVPSGFTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS------LEMGKKENIKRLIVT 118 (315)
T ss_dssp CSBCCSCHHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE------SSSCHHHHHHHHHHH
T ss_pred CCccCChHHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE------CCCCHHHHHHHHHHH
Confidence 34455556666665 33334468999999999999999999987654435566664 123445555555544
No 276
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.05 E-value=0.017 Score=61.29 Aligned_cols=109 Identities=12% Similarity=0.148 Sum_probs=60.5
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEech--hhhcccChHHHHHHHHHhhhCCCCccccccchHHHHHhh
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVR--EKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRL 282 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~--~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L 282 (1103)
-.+++|+|+.|.|||||++.+...+...+.+.+++.... ...+.. . .++.+ .............+.+.|
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~-~-----~~v~q---~~~gl~~~~l~~~la~aL 95 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHK-K-----SIVNQ---REVGEDTKSFADALRAAL 95 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCS-S-----SEEEE---EEBTTTBSCHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCc-c-----eeeeH---HHhCCCHHHHHHHHHHHH
Confidence 468999999999999999999986654445555543210 000000 0 00000 000001111122667777
Q ss_pred cCCceEEEEeCCCCCHhHHHHHhCCCCccCCCcEEEEEeCchhh
Q 044579 283 QRVKVLIVLDDVNDEFTQLESLAGGVDRFSPGSRIVITTRDKQV 326 (1103)
Q Consensus 283 ~~k~~LlVLDdv~~~~~~l~~l~~~~~~~~~gs~IIiTTR~~~v 326 (1103)
..++=++++|..- +.+....+... ...|..|++||-+...
T Consensus 96 ~~~p~illlDEp~-D~~~~~~~l~~---~~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 96 REDPDVIFVGEMR-DLETVETALRA---AETGHLVFGTLHTNTA 135 (261)
T ss_dssp HHCCSEEEESCCC-SHHHHHHHHHH---HHTTCEEEEEECCSSH
T ss_pred hhCCCEEEeCCCC-CHHHHHHHHHH---HccCCEEEEEeCcchH
Confidence 6677889999996 44444333222 1346778888876653
No 277
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.99 E-value=0.47 Score=51.11 Aligned_cols=28 Identities=21% Similarity=0.255 Sum_probs=24.4
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHHHhc
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQISR 231 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (1103)
..++++|+|.+|+||||++..++..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3569999999999999999999987753
No 278
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.97 E-value=0.028 Score=57.04 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=22.7
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHH
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
..+|+|.|+.|+||||+|+.++..+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3589999999999999999999876
No 279
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.97 E-value=0.2 Score=54.75 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=25.0
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHHHhcc
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQISRH 232 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (1103)
...+++|+|..|+||||+++.++..++..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 46799999999999999999999866543
No 280
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.96 E-value=0.027 Score=56.23 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=22.0
Q ss_pred EEEEEeecCCChhHHHHHHHHHHH
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
+.|.|.|+.|+||||+|+.++.++
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 478899999999999999999876
No 281
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.91 E-value=0.046 Score=51.01 Aligned_cols=53 Identities=19% Similarity=0.204 Sum_probs=32.8
Q ss_pred EEEEcCCCCC--CCCCccccccccccccccccccccccc-cccCCcceEecCCCCCC
Q 044579 578 YLHWHGYPLK--TLPFDFELENLIELRLPYSKVEQIWEG-KKEASKLKSIDLCHSQH 631 (1103)
Q Consensus 578 ~L~l~~~~l~--~lp~~~~l~~L~~L~L~~n~i~~l~~~-~~~l~~L~~L~L~~~~~ 631 (1103)
.++.+++.++ .+|..+ ..+|++|+|++|+|+.++.+ +..+++|+.|+|++|..
T Consensus 12 ~v~Cs~~~L~~~~vP~~l-p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF-PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCC-CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCC-CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4555666666 666543 34566777777777766644 45666677777766653
No 282
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=93.88 E-value=0.045 Score=63.65 Aligned_cols=44 Identities=23% Similarity=0.124 Sum_probs=36.4
Q ss_pred CCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHH
Q 044579 182 DGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 182 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
+.+||.+..++.+...+..+ .-|.|+|.+|+|||+||+++++..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHHH
Confidence 35899999988887776543 368899999999999999998765
No 283
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.85 E-value=0.039 Score=60.40 Aligned_cols=31 Identities=29% Similarity=0.330 Sum_probs=25.8
Q ss_pred CCeEEEEEeecCCChhHHHHHHHHHHHhccC
Q 044579 203 HDVRIVGIWGMGGIGKTTIASVVFHQISRHF 233 (1103)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 233 (1103)
+....|.|+|+.|.||||+|+.++..+...|
T Consensus 22 g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 22 NYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 4456799999999999999999998765544
No 284
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.75 E-value=0.16 Score=54.82 Aligned_cols=35 Identities=20% Similarity=0.156 Sum_probs=27.5
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhccCCceEEE
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFM 239 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 239 (1103)
.++++++|.+|+||||++..++..+..+-..+.++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~ 132 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLV 132 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 57899999999999999999998776543334444
No 285
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.74 E-value=0.58 Score=53.59 Aligned_cols=56 Identities=16% Similarity=0.138 Sum_probs=38.8
Q ss_pred ccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEE
Q 044579 184 LVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMA 240 (1103)
Q Consensus 184 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 240 (1103)
..|...-+..|..++. +-..-.++.|.|.+|+||||+|..++.....+-..++|+.
T Consensus 177 ~~gi~TG~~~LD~~lg-Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS 232 (444)
T 3bgw_A 177 ITGVPSGFTELDRMTY-GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 232 (444)
T ss_dssp CCSBCCSCHHHHHHHS-SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCCcCCCcHHHHhhcC-CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence 3455555566666663 3334568999999999999999999987765533455553
No 286
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.65 E-value=0.061 Score=53.92 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=23.3
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHhc
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQISR 231 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (1103)
.+|.|.|+.|+||||+|+.+++++..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999998764
No 287
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.64 E-value=0.061 Score=57.91 Aligned_cols=29 Identities=14% Similarity=0.194 Sum_probs=25.0
Q ss_pred CCeEEEEEeecCCChhHHHHHHHHHHHhc
Q 044579 203 HDVRIVGIWGMGGIGKTTIASVVFHQISR 231 (1103)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (1103)
....+|+|.|..|+||||||+.+...+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 45679999999999999999999886653
No 288
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.56 E-value=0.033 Score=54.90 Aligned_cols=20 Identities=35% Similarity=0.624 Sum_probs=18.7
Q ss_pred EEEEEeecCCChhHHHHHHH
Q 044579 206 RIVGIWGMGGIGKTTIASVV 225 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v 225 (1103)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999999
No 289
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.50 E-value=0.038 Score=54.15 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=22.8
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHh
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
.++|+|.|+.|+||||+|+.++.++.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998764
No 290
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=93.45 E-value=0.11 Score=55.69 Aligned_cols=49 Identities=14% Similarity=0.065 Sum_probs=33.8
Q ss_pred HHHHHHhhc----ccCCCeEEEEEeecCCChhHHHHHHHHHHHhccC--CceEEEE
Q 044579 191 IEEMKSLLC----LESHDVRIVGIWGMGGIGKTTIASVVFHQISRHF--QGKCFMA 240 (1103)
Q Consensus 191 ~~~l~~~L~----~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F--~~~~~~~ 240 (1103)
..+|...|. .+-..- ++.|+|.+|+||||||.+++.....++ ..++|+.
T Consensus 11 i~~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 11 IPMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp CHHHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred CHHHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 345555564 222223 689999999999999999988766543 3466765
No 291
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.43 E-value=0.13 Score=56.07 Aligned_cols=35 Identities=23% Similarity=0.276 Sum_probs=27.8
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEE
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFM 239 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 239 (1103)
..++++|+|.+|+||||++..++..++.. ...+.+
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~-g~kVll 138 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAEL-GYKVLI 138 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHT-TCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEE
Confidence 46799999999999999999999877654 333433
No 292
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.40 E-value=0.042 Score=54.47 Aligned_cols=22 Identities=32% Similarity=0.372 Sum_probs=20.5
Q ss_pred EEEEEeecCCChhHHHHHHHHH
Q 044579 206 RIVGIWGMGGIGKTTIASVVFH 227 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~ 227 (1103)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 293
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.33 E-value=0.077 Score=53.74 Aligned_cols=27 Identities=22% Similarity=0.377 Sum_probs=24.2
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHHHh
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
...+|+|.|+.|.||||+|+.++..+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999998775
No 294
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.31 E-value=0.031 Score=55.97 Aligned_cols=38 Identities=24% Similarity=0.358 Sum_probs=18.3
Q ss_pred cCCCCCCEEecCCC-cccc----cccccccCCCCCcEEeecCC
Q 044579 730 ECLTNLKELYLSRC-STLN----RLSTSICKLKSLHELILSDC 767 (1103)
Q Consensus 730 ~~l~~L~~L~L~~~-~~~~----~lp~~l~~l~~L~~L~L~~~ 767 (1103)
.+-+.|+.|+|++| .+.. .+-..+..-+.|+.|+|++|
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n 80 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT 80 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC
Confidence 34456666666654 3221 12233344455555555554
No 295
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.27 E-value=0.027 Score=56.16 Aligned_cols=29 Identities=31% Similarity=0.482 Sum_probs=24.1
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHhccCC
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQISRHFQ 234 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 234 (1103)
|.|.|.|+.|+|||||++++..+....|.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~ 30 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCeE
Confidence 46889999999999999999887655443
No 296
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.25 E-value=0.059 Score=54.06 Aligned_cols=25 Identities=20% Similarity=0.297 Sum_probs=22.7
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHH
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
..+|.|.|++|+||||+|+.+..++
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999876
No 297
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.22 E-value=0.078 Score=52.93 Aligned_cols=27 Identities=33% Similarity=0.414 Sum_probs=24.1
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhc
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISR 231 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (1103)
..+|.|.|++|+||||+|+.++..+..
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 468999999999999999999987754
No 298
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.18 E-value=0.075 Score=51.85 Aligned_cols=28 Identities=21% Similarity=0.230 Sum_probs=24.9
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhcc
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISRH 232 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (1103)
.++++|.|..|+|||||+.++...++.+
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 5689999999999999999999887654
No 299
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.13 E-value=0.036 Score=55.07 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=22.2
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHH
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
.+.|.|.|++|+||||+|+.+++++
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3578899999999999999999875
No 300
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.13 E-value=0.57 Score=54.04 Aligned_cols=55 Identities=13% Similarity=0.222 Sum_probs=36.9
Q ss_pred cccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccC-CceEEEE
Q 044579 185 VGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHF-QGKCFMA 240 (1103)
Q Consensus 185 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~ 240 (1103)
.|...-+..|..++ .+-..-.++.|.|.+|+||||+|..++..+.... ..++|+.
T Consensus 184 ~~i~tG~~~LD~~~-gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 184 TGIPTGFTELDRMT-SGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp CSBCCSCHHHHHHH-SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCCCCcHHHHhhc-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 34444455555555 2323345899999999999999999998765432 2456654
No 301
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=93.12 E-value=0.055 Score=61.02 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=22.3
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHh
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
..+.++|++|+|||++|+.+++...
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999998763
No 302
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.11 E-value=0.048 Score=54.73 Aligned_cols=24 Identities=33% Similarity=0.362 Sum_probs=21.4
Q ss_pred eEEEEEeecCCChhHHHHHHHHHH
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQ 228 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~ 228 (1103)
..+++|.|+.|+|||||++.++..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 368999999999999999998764
No 303
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.09 E-value=0.036 Score=54.60 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=22.1
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHh
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
.+|+|.|+.|+||||+|+.++....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999988653
No 304
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.02 E-value=0.33 Score=53.13 Aligned_cols=73 Identities=14% Similarity=0.152 Sum_probs=47.7
Q ss_pred ccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHHHHHHhhh
Q 044579 184 LVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRDEVISQVL 263 (1103)
Q Consensus 184 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~ 263 (1103)
+.|...-+..|..++. +-..-.++.|.|.+|+||||+|..++.....+=..++|+. -.....++...+++...
T Consensus 26 ~~gi~TG~~~LD~~~g-Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS------lEms~~ql~~Rlls~~~ 98 (338)
T 4a1f_A 26 VTGIPTGFVQLDNYTS-GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS------LEMSAEQLALRALSDLT 98 (338)
T ss_dssp CCSBCCSCHHHHHHHC-SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE------SSSCHHHHHHHHHHHHH
T ss_pred cCcccCCChHHHHHhc-CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe------CCCCHHHHHHHHHHHhh
Confidence 4555555666666663 3233458999999999999999999987655333455554 23455566666655543
No 305
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=92.99 E-value=0.043 Score=61.12 Aligned_cols=52 Identities=15% Similarity=0.139 Sum_probs=35.9
Q ss_pred CCCCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHh
Q 044579 177 ESTDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 177 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
++...+.++|.+..++.+........ ..-+.|+|.+|+|||++|+.+++...
T Consensus 19 ~~~~f~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 19 PVFPFSAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCCCchhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHHhCc
Confidence 33445679999886555433332111 22388999999999999999998654
No 306
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.96 E-value=0.55 Score=53.44 Aligned_cols=29 Identities=24% Similarity=0.256 Sum_probs=25.8
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHHHhcc
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQISRH 232 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (1103)
..++|.++|.+|+||||+|..++..++.+
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 46899999999999999999999887765
No 307
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.90 E-value=0.056 Score=57.08 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=22.2
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHh
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
.+++|.|+.|+||||||++++.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999998753
No 308
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.89 E-value=0.49 Score=53.65 Aligned_cols=36 Identities=22% Similarity=0.108 Sum_probs=28.0
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEE
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFM 239 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 239 (1103)
..++|+++|.+|+||||++..++..++.+-..+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv 131 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLV 131 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 368999999999999999999998776543333333
No 309
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.86 E-value=0.054 Score=54.28 Aligned_cols=26 Identities=23% Similarity=0.551 Sum_probs=23.2
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHhc
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQISR 231 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (1103)
.+|.|.|++|+||||+|+.++.++..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999987753
No 310
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.85 E-value=0.28 Score=56.50 Aligned_cols=73 Identities=15% Similarity=0.126 Sum_probs=45.7
Q ss_pred ccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhcc-CCceEEEEechhhhcccChHHHHHHHHHhh
Q 044579 184 LVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRH-FQGKCFMANVREKANKMGVIHVRDEVISQV 262 (1103)
Q Consensus 184 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~~~~~~~~~~~~~ll~~l 262 (1103)
..|...-+..|..++ .+-..-.++.|.|.+|+||||+|..++..+... -..++|+. -..+...+...++...
T Consensus 180 ~~~i~tG~~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s------lE~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 180 VAGVRTGFKELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS------LEMPAAQLTLRMMCSE 252 (444)
T ss_dssp ---CCCSCHHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE------SSSCHHHHHHHHHHHH
T ss_pred CCcccCCCHhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE------CCCCHHHHHHHHHHHH
Confidence 345555556666666 333344689999999999999999999876543 23456654 2334455666655543
Q ss_pred h
Q 044579 263 L 263 (1103)
Q Consensus 263 ~ 263 (1103)
.
T Consensus 253 ~ 253 (444)
T 2q6t_A 253 A 253 (444)
T ss_dssp T
T ss_pred c
Confidence 3
No 311
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.83 E-value=0.052 Score=53.62 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.6
Q ss_pred EEEEeecCCChhHHHHHHHHHHHh
Q 044579 207 IVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
.|.|.|++|+||||+|+.++.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998763
No 312
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.74 E-value=0.055 Score=54.87 Aligned_cols=24 Identities=29% Similarity=0.574 Sum_probs=21.9
Q ss_pred EEEEeecCCChhHHHHHHHHHHHh
Q 044579 207 IVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
.|+|.|+.|+||||+|+.++.++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999998764
No 313
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=92.72 E-value=0.28 Score=54.31 Aligned_cols=50 Identities=18% Similarity=0.137 Sum_probs=35.1
Q ss_pred HHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhc------cCCceEEEE
Q 044579 191 IEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISR------HFQGKCFMA 240 (1103)
Q Consensus 191 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~F~~~~~~~ 240 (1103)
...|..+|..+-..-.++.|+|.+|+||||||..++..... .-..++|+.
T Consensus 108 ~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~ 163 (343)
T 1v5w_A 108 SQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 163 (343)
T ss_dssp CHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred ChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 44555666433344579999999999999999999986432 223466765
No 314
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.72 E-value=0.078 Score=53.68 Aligned_cols=25 Identities=44% Similarity=0.513 Sum_probs=22.7
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHH
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
..+++|.|+.|+||||+|+.++..+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998876
No 315
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=92.71 E-value=0.16 Score=55.93 Aligned_cols=28 Identities=18% Similarity=0.065 Sum_probs=23.9
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHhccC
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQISRHF 233 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F 233 (1103)
..++|+|.+|.|||||++.+++.+....
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i~~~~ 202 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSIAYNH 202 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHHHHHC
T ss_pred cEEEEecCCCCChhHHHHHHHHHHhhcC
Confidence 5799999999999999999998765443
No 316
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.71 E-value=0.34 Score=51.20 Aligned_cols=23 Identities=35% Similarity=0.342 Sum_probs=20.7
Q ss_pred EEEEEeecCCChhHHHHHHHHHH
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQ 228 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~ 228 (1103)
.+++|.|..|.|||||.+.++--
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999998854
No 317
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.69 E-value=0.052 Score=55.12 Aligned_cols=24 Identities=17% Similarity=0.405 Sum_probs=22.1
Q ss_pred EEEEEeecCCChhHHHHHHHHHHH
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
.+|+|.|+.|+||||+|+.++..+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999876
No 318
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.67 E-value=0.047 Score=54.44 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.6
Q ss_pred EEEEeecCCChhHHHHHHHHHHHh
Q 044579 207 IVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
+|+|.|++|+||||+|+.++.++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998753
No 319
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=92.62 E-value=0.061 Score=53.46 Aligned_cols=26 Identities=15% Similarity=0.391 Sum_probs=22.9
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHh
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
.++++|+|+.|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35899999999999999999988654
No 320
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.58 E-value=0.072 Score=52.56 Aligned_cols=25 Identities=40% Similarity=0.583 Sum_probs=22.4
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHH
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
..+++|.|+.|+||||+|+.++...
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 321
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.55 E-value=0.095 Score=52.42 Aligned_cols=31 Identities=23% Similarity=0.426 Sum_probs=24.3
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHhccCCceEEEE
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMA 240 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 240 (1103)
.+++|.|+.|.||||+++.++.. ..+.+++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~----~~g~~~i~ 33 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ----LDNSAYIE 33 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH----SSSEEEEE
T ss_pred eEEEEECCCCCcHHHHHHHHhcc----cCCeEEEc
Confidence 47899999999999999999752 33445554
No 322
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.54 E-value=0.075 Score=53.19 Aligned_cols=41 Identities=20% Similarity=0.192 Sum_probs=30.2
Q ss_pred hHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhc
Q 044579 190 RIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISR 231 (1103)
Q Consensus 190 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (1103)
-+..+..++.. -+..+.+.|+|++|.||||+|.++++.+..
T Consensus 44 f~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 44 FLGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp HHHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35556666642 223446999999999999999999987643
No 323
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=92.54 E-value=0.13 Score=52.86 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=21.5
Q ss_pred EEEEEeecCCChhHHHHHHHHHHH
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
..+||.|++|+||||+|+.+++++
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999998875
No 324
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.52 E-value=0.064 Score=53.99 Aligned_cols=25 Identities=24% Similarity=0.301 Sum_probs=22.5
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHH
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
..+|+|.|+.|+||||+|+.+++++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999865
No 325
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.52 E-value=0.11 Score=52.89 Aligned_cols=28 Identities=21% Similarity=0.327 Sum_probs=24.4
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHhccC
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQISRHF 233 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F 233 (1103)
.+|+|.|+.|+||||+|+.++.++....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 5799999999999999999998876543
No 326
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.50 E-value=0.14 Score=47.61 Aligned_cols=52 Identities=13% Similarity=0.120 Sum_probs=22.6
Q ss_pred EEecCCccce--ecCccccCCCCCCEEecCCCcccccccccccCCCCCcEEeecCC
Q 044579 714 ELNLCDTAIE--EVPSSVECLTNLKELYLSRCSTLNRLSTSICKLKSLHELILSDC 767 (1103)
Q Consensus 714 ~L~L~~~~i~--~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~ 767 (1103)
.++.+++.++ .+|..+ .++|+.|+|++|.+...-+..|..+++|+.|+|++|
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 3444444444 444332 124555555555443333333444444444444443
No 327
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=92.47 E-value=0.22 Score=56.68 Aligned_cols=31 Identities=29% Similarity=0.644 Sum_probs=25.3
Q ss_pred EEEEeecCCChhHHHHHHHHHHHhccCCceE
Q 044579 207 IVGIWGMGGIGKTTIASVVFHQISRHFQGKC 237 (1103)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~ 237 (1103)
.++|+|.+|+||||||+.+......++...+
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~ 183 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQEHGGIS 183 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHHTCCCE
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhccCcEE
Confidence 5889999999999999999987665554443
No 328
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.46 E-value=0.074 Score=53.39 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=21.9
Q ss_pred EEEEEeecCCChhHHHHHHHHHHH
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
.+|+|.|+.|+||||+|+.++..+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998765
No 329
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.44 E-value=0.074 Score=53.04 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=21.8
Q ss_pred eEEEEEeecCCChhHHHHHHHHHH
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQ 228 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~ 228 (1103)
...|+|.|+.|+||||+|+.++..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999876
No 330
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=92.41 E-value=0.16 Score=55.08 Aligned_cols=29 Identities=21% Similarity=0.272 Sum_probs=25.5
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHHHhcc
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQISRH 232 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (1103)
...+++|+|.+|+||||++..++..++..
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~ 131 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDE 131 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhc
Confidence 45799999999999999999999877654
No 331
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.35 E-value=0.05 Score=54.13 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=18.2
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHh
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
.+|.|.|+.|+||||+|+.+..++.
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHST
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5799999999999999999987653
No 332
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.32 E-value=0.084 Score=53.51 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=23.0
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHHH
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
...+|+|.|+.|+||||+|+.+++++
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998764
No 333
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.31 E-value=0.056 Score=53.15 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=22.0
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHh
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
++|+|.|+.|+||||+|+.+..++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999998753
No 334
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.30 E-value=0.077 Score=52.89 Aligned_cols=24 Identities=33% Similarity=0.354 Sum_probs=21.9
Q ss_pred EEEEEeecCCChhHHHHHHHHHHH
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
..|+|.|+.|+||||+|+.+++++
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998765
No 335
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.28 E-value=0.11 Score=53.10 Aligned_cols=29 Identities=14% Similarity=0.154 Sum_probs=24.9
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhccC
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISRHF 233 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 233 (1103)
..+|+|.|+.|+||||+|+.+.+++...+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~ 37 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAAG 37 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 35899999999999999999999876543
No 336
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.28 E-value=0.22 Score=53.80 Aligned_cols=35 Identities=29% Similarity=0.396 Sum_probs=27.2
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEE
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFM 239 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 239 (1103)
...+++|+|..|+||||+++.++..+... .+.+.+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~-~g~V~l 133 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLM 133 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEE
Confidence 35799999999999999999999876543 344444
No 337
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.27 E-value=0.07 Score=53.83 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=22.6
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHh
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
.+|+|.|+.|+||||+|+.++.++.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999998763
No 338
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.26 E-value=0.077 Score=51.84 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=21.6
Q ss_pred EEEEeecCCChhHHHHHHHHHHHh
Q 044579 207 IVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
.|+|.|+.|+||||+|+.+.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998763
No 339
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.11 E-value=0.089 Score=52.67 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=22.5
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHH
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
..+|+|.|+.|+||||+|+.++.++
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998865
No 340
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.06 E-value=0.089 Score=53.23 Aligned_cols=26 Identities=35% Similarity=0.432 Sum_probs=22.8
Q ss_pred CCeEEEEEeecCCChhHHHHHHHHHH
Q 044579 203 HDVRIVGIWGMGGIGKTTIASVVFHQ 228 (1103)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (1103)
....+|+|.|+.|+||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34578999999999999999999874
No 341
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=92.02 E-value=0.13 Score=55.98 Aligned_cols=37 Identities=24% Similarity=0.354 Sum_probs=28.8
Q ss_pred CCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEE
Q 044579 203 HDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFM 239 (1103)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 239 (1103)
++.++|+|+|=||+||||.|.-++.-++..=..+.-+
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllI 82 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI 82 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEE
Confidence 4579999999999999999999888776554444444
No 342
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.95 E-value=0.087 Score=55.60 Aligned_cols=28 Identities=14% Similarity=0.371 Sum_probs=23.8
Q ss_pred CCeEEEEEeecCCChhHHHHHHHHHHHh
Q 044579 203 HDVRIVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
....+|+|.|+.|+||||+|+.+...+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3457899999999999999999988654
No 343
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.94 E-value=0.088 Score=53.31 Aligned_cols=25 Identities=28% Similarity=0.223 Sum_probs=22.4
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHH
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
..+|+|.|++|+||||+|+.+..++
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999876
No 344
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=91.93 E-value=0.091 Score=59.72 Aligned_cols=51 Identities=20% Similarity=0.218 Sum_probs=34.8
Q ss_pred CccccchhHHHHHHhhccc------------CCCeEEEEEeecCCChhHHHHHHHHHHHhccC
Q 044579 183 GLVGLNTRIEEMKSLLCLE------------SHDVRIVGIWGMGGIGKTTIASVVFHQISRHF 233 (1103)
Q Consensus 183 ~~vGr~~~~~~l~~~L~~~------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 233 (1103)
.++|.++-.+.+...+... ....+-+.++|++|+||||+|++++......|
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~ 78 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 78 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCc
Confidence 4677776666665444210 11235688999999999999999998764433
No 345
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=91.91 E-value=0.066 Score=54.43 Aligned_cols=26 Identities=23% Similarity=0.442 Sum_probs=22.9
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHh
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
.++|+|.|+.|+||||+++.+.....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45899999999999999999988763
No 346
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=91.90 E-value=0.075 Score=54.24 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=23.0
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHh
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
..+++|.|+.|+|||||++.+.....
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999987654
No 347
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=91.86 E-value=0.13 Score=55.45 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=22.9
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHHH
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
...+|.|.|++|+||||+|+.+..+.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998765
No 348
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=91.86 E-value=0.064 Score=53.64 Aligned_cols=28 Identities=32% Similarity=0.511 Sum_probs=23.9
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHhccC
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQISRHF 233 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F 233 (1103)
++++|.|+.|+|||||++.+.......|
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~ 29 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccc
Confidence 4789999999999999999998765444
No 349
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.78 E-value=0.082 Score=54.43 Aligned_cols=25 Identities=24% Similarity=0.198 Sum_probs=22.3
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHh
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
..|+|.|++|+||||+|+.++.++.
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5789999999999999999998763
No 350
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.78 E-value=0.073 Score=59.65 Aligned_cols=109 Identities=14% Similarity=0.171 Sum_probs=59.3
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhccCCceEEE-EechhhhcccChHHHHHHHHHhhhCCCCccccccchHHHHHhhc
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFM-ANVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQ 283 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~-~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 283 (1103)
..+++|+|..|.||||+++.+...+.....+.+.+ .+..+....... .++.+ .............++..++
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~-----~~v~Q---~~~g~~~~~~~~~l~~~L~ 207 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKK-----SIVNQ---REVGEDTKSFADALRAALR 207 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSS-----SEEEE---EEBTTTBSCSHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCc-----eEEEe---eecCCCHHHHHHHHHHHhh
Confidence 46899999999999999999998765543444433 211000000000 00000 0000011112236777787
Q ss_pred CCceEEEEeCCCCCHhHHHHHhCCCCccCCCcEEEEEeCchh
Q 044579 284 RVKVLIVLDDVNDEFTQLESLAGGVDRFSPGSRIVITTRDKQ 325 (1103)
Q Consensus 284 ~k~~LlVLDdv~~~~~~l~~l~~~~~~~~~gs~IIiTTR~~~ 325 (1103)
..+=+|++|.+- +.+.+...... ...|..|+.|+-...
T Consensus 208 ~~pd~illdE~~-d~e~~~~~l~~---~~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 208 EDPDVIFVGEMR-DLETVETALRA---AETGHLVFGTLHTNT 245 (372)
T ss_dssp SCCSEEEESCCC-SHHHHHHHHHH---HTTTCEEEECCCCCS
T ss_pred hCcCEEEECCCC-CHHHHHHHHHH---HhcCCEEEEEECcch
Confidence 788899999996 55544433222 134666777776543
No 351
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=91.76 E-value=0.28 Score=54.30 Aligned_cols=57 Identities=25% Similarity=0.196 Sum_probs=40.6
Q ss_pred ccccchhHHHHHHhhc-ccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEE
Q 044579 184 LVGLNTRIEEMKSLLC-LESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMA 240 (1103)
Q Consensus 184 ~vGr~~~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 240 (1103)
.-+...-...|..+|. .+-..-+++.|.|.+|+||||||..++......-..++|+.
T Consensus 41 ~~~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 41 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3444555666777774 23233468999999999999999999987655544677776
No 352
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.74 E-value=0.1 Score=54.69 Aligned_cols=36 Identities=19% Similarity=0.173 Sum_probs=28.1
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEE
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMA 240 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 240 (1103)
-.++.|.|.+|+||||||..++......-..++|+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 358999999999999999998876654444566665
No 353
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.73 E-value=0.23 Score=55.24 Aligned_cols=40 Identities=25% Similarity=0.336 Sum_probs=29.6
Q ss_pred HHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhcc
Q 044579 193 EMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRH 232 (1103)
Q Consensus 193 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (1103)
++.+.+........+|+|+|.+|+|||||+..+.......
T Consensus 67 ~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~ 106 (355)
T 3p32_A 67 QLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIER 106 (355)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred HHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 3333333334567899999999999999999998876543
No 354
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=91.70 E-value=0.094 Score=54.21 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.7
Q ss_pred EEEEEeecCCChhHHHHHHHHHHH
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
.+|+|.|+.|+||||+|+.+...+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998765
No 355
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.68 E-value=0.09 Score=53.33 Aligned_cols=21 Identities=33% Similarity=0.484 Sum_probs=19.8
Q ss_pred EEEEeecCCChhHHHHHHHHH
Q 044579 207 IVGIWGMGGIGKTTIASVVFH 227 (1103)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~ 227 (1103)
+|+|.|+.|+||||+|+.++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999987
No 356
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.65 E-value=0.29 Score=54.16 Aligned_cols=35 Identities=29% Similarity=0.396 Sum_probs=27.4
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEE
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFM 239 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 239 (1103)
...+++|+|..|+||||+++.++..+... .+.+.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~-~G~V~l 190 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLM 190 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcccc-CCEEEE
Confidence 35799999999999999999999876543 344444
No 357
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.64 E-value=0.12 Score=51.87 Aligned_cols=26 Identities=23% Similarity=0.475 Sum_probs=23.0
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHHH
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
...+|+|.|+.|+||||+|+.+...+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999998763
No 358
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.63 E-value=0.096 Score=53.42 Aligned_cols=28 Identities=14% Similarity=0.281 Sum_probs=24.2
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhcc
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISRH 232 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (1103)
..+|+|.|+.|+||||+|+.+.+++...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 3589999999999999999999876543
No 359
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.62 E-value=0.099 Score=52.43 Aligned_cols=25 Identities=28% Similarity=0.545 Sum_probs=22.4
Q ss_pred EEEEeecCCChhHHHHHHHHHHHhc
Q 044579 207 IVGIWGMGGIGKTTIASVVFHQISR 231 (1103)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (1103)
+|+|.|+.|+||||+|+.+.+++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999987743
No 360
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=91.59 E-value=0.1 Score=55.33 Aligned_cols=26 Identities=23% Similarity=0.470 Sum_probs=23.0
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHh
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
..+|.|.|++|+||||+|+.+...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 35899999999999999999998754
No 361
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.54 E-value=0.088 Score=52.83 Aligned_cols=27 Identities=19% Similarity=0.430 Sum_probs=23.5
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHHHh
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
..++++|+|+.|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 356899999999999999999997654
No 362
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=91.50 E-value=0.26 Score=54.47 Aligned_cols=55 Identities=20% Similarity=0.123 Sum_probs=39.1
Q ss_pred ccchhHHHHHHhhc-ccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEE
Q 044579 186 GLNTRIEEMKSLLC-LESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMA 240 (1103)
Q Consensus 186 Gr~~~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 240 (1103)
+...-...|..+|. .+-..-+++.|+|.+|+||||||..++......-..++|+.
T Consensus 41 ~i~TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 41 VIPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp EECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ccccCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 44445566777765 33234568999999999999999999987655444566765
No 363
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=91.48 E-value=0.13 Score=53.24 Aligned_cols=49 Identities=14% Similarity=0.092 Sum_probs=31.6
Q ss_pred HHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEE
Q 044579 192 EEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMA 240 (1103)
Q Consensus 192 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 240 (1103)
..+..++..+-..-.+++|.|.+|+|||||++.++......-..+.|+.
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4455544311112358999999999999999999976543333445543
No 364
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.47 E-value=0.11 Score=52.92 Aligned_cols=25 Identities=36% Similarity=0.485 Sum_probs=21.9
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHH
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQ 228 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (1103)
...+|+|.|+.|.||||+|+.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3578999999999999999998764
No 365
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=91.47 E-value=0.18 Score=52.15 Aligned_cols=38 Identities=24% Similarity=0.292 Sum_probs=27.5
Q ss_pred HHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHH
Q 044579 192 EEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 192 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
..|..++..+-..-.+++|+|..|+|||||++.++...
T Consensus 12 ~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 12 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp HHHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hhHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34444553222234699999999999999999998754
No 366
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=91.34 E-value=0.13 Score=52.45 Aligned_cols=27 Identities=30% Similarity=0.409 Sum_probs=23.5
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHHHh
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
...+|+|.|..|.|||||++.+...+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999988654
No 367
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.23 E-value=0.11 Score=52.87 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=21.8
Q ss_pred EEEEEeecCCChhHHHHHHHHHHH
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
.+++|.|+.|+||||+++.+....
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998765
No 368
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=91.22 E-value=0.1 Score=52.85 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=21.7
Q ss_pred EEEEEeecCCChhHHHHHHHHHHH
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
.+++|.|+.|+|||||++.++...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 589999999999999999998764
No 369
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.21 E-value=0.13 Score=50.86 Aligned_cols=27 Identities=26% Similarity=0.274 Sum_probs=23.4
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhc
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISR 231 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (1103)
..+|+|.|+.|+||||+|+.+...+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 468899999999999999999987643
No 370
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.21 E-value=0.11 Score=54.50 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=22.7
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHH
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
..+++|.|+.|+||||+++.+++++
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999775
No 371
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=91.21 E-value=0.4 Score=53.26 Aligned_cols=57 Identities=23% Similarity=0.156 Sum_probs=40.2
Q ss_pred ccccchhHHHHHHhhc-ccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEE
Q 044579 184 LVGLNTRIEEMKSLLC-LESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMA 240 (1103)
Q Consensus 184 ~vGr~~~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 240 (1103)
.-+...-...|..+|. .+-..-+++.|+|.+|+||||||..++......-..++|+.
T Consensus 52 ~~~i~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 52 VQVVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CceecCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 3344555667777775 22233458899999999999999999987655444677776
No 372
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=91.19 E-value=0.15 Score=53.15 Aligned_cols=50 Identities=18% Similarity=0.126 Sum_probs=33.5
Q ss_pred HHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhc------cCCceEEEE
Q 044579 191 IEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISR------HFQGKCFMA 240 (1103)
Q Consensus 191 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~F~~~~~~~ 240 (1103)
+..|..+|..+-..-.+++|+|.+|+||||||+.++..... .-..++|+.
T Consensus 10 ~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~ 65 (243)
T 1n0w_A 10 SKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 65 (243)
T ss_dssp CHHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred ChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence 34555555422223458999999999999999999985322 124566765
No 373
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.17 E-value=0.11 Score=52.87 Aligned_cols=22 Identities=50% Similarity=0.563 Sum_probs=20.1
Q ss_pred EEEEEeecCCChhHHHHHHHHH
Q 044579 206 RIVGIWGMGGIGKTTIASVVFH 227 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~ 227 (1103)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999875
No 374
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=91.10 E-value=0.13 Score=51.03 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=21.5
Q ss_pred EEEEeecCCChhHHHHHHHHHHHh
Q 044579 207 IVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
.++|+|..|+|||||++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998654
No 375
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=91.09 E-value=0.96 Score=52.36 Aligned_cols=36 Identities=25% Similarity=0.337 Sum_probs=26.9
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEE
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFM 239 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 239 (1103)
..++|+|+|.+|+||||++..++..++.+=..+..+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllV 135 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLI 135 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 467999999999999999999998776542234444
No 376
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=91.09 E-value=0.16 Score=55.18 Aligned_cols=46 Identities=22% Similarity=0.243 Sum_probs=31.9
Q ss_pred cccchhHHHHHHhhccc--CCCeEEEEEeecCCChhHHHHHHHHHHHh
Q 044579 185 VGLNTRIEEMKSLLCLE--SHDVRIVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 185 vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
+|-...+..+...+... .....+|+|.|..|+||||+|+.+...+.
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 44444555544333322 34467999999999999999999887654
No 377
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.06 E-value=0.079 Score=53.02 Aligned_cols=93 Identities=16% Similarity=0.100 Sum_probs=58.0
Q ss_pred cccCCCCCcEEeecCCCCCCc--cccCCccccCCCCCCeeeccCCCCCCCCCC--CcccCCCCCCCEEeCCCCCcc----
Q 044579 752 SICKLKSLHELILSDCLSLET--ITELPSSFANLEGLEKLVLVGCSKLNKLPH--SIDFCCLSSLQWLDLSGNNFE---- 823 (1103)
Q Consensus 752 ~l~~l~~L~~L~L~~~~~l~~--i~~lp~~~~~l~~L~~L~L~~~~~~~~lp~--~~~~~~l~~L~~L~Ls~n~l~---- 823 (1103)
.+.+-+.|++|+|++|..+.. ...+-..+..-+.|+.|+|++|.+...-.. ...+..-+.|++|+|++|.|.
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 345567899999987522221 112334455667889999988876532100 112233467888888888887
Q ss_pred -ccCccccCCCCCCEEeccCCc
Q 044579 824 -SLPSSIKQLSQLRKLDLSNCN 844 (1103)
Q Consensus 824 -~lp~~i~~l~~L~~L~L~~n~ 844 (1103)
.+-..+..-+.|+.|+|++|.
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~ 137 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQR 137 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCS
T ss_pred HHHHHHHhhCCceeEEECCCCc
Confidence 344556666778888887653
No 378
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=90.96 E-value=0.12 Score=52.82 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.6
Q ss_pred EEEEeecCCChhHHHHHHHHHHH
Q 044579 207 IVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
.|+|.|+.|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 379
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=90.93 E-value=0.095 Score=54.99 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=22.4
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHh
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
.+|+|.|+.|.||||+++.++..+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4799999999999999999998763
No 380
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=90.88 E-value=0.12 Score=53.56 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=21.7
Q ss_pred EEEEEeecCCChhHHHHHHHHHHH
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
..|+|.|++|+||||+|+.++.++
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 579999999999999999998764
No 381
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=90.86 E-value=0.1 Score=53.76 Aligned_cols=25 Identities=24% Similarity=0.157 Sum_probs=22.4
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHh
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
..|.|.|++|+||||+|+.++.++.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998764
No 382
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=90.77 E-value=0.33 Score=53.20 Aligned_cols=39 Identities=23% Similarity=0.210 Sum_probs=29.1
Q ss_pred HHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHH
Q 044579 191 IEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 191 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
...|..+|..+-..-.++.|+|.+|+||||+|..++...
T Consensus 84 ~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 84 SSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp CHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred ChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 455666664232335799999999999999999998763
No 383
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=90.77 E-value=0.13 Score=51.57 Aligned_cols=25 Identities=20% Similarity=0.421 Sum_probs=22.4
Q ss_pred EEEEeecCCChhHHHHHHHHHHHhc
Q 044579 207 IVGIWGMGGIGKTTIASVVFHQISR 231 (1103)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (1103)
.|+|.|+.|+||||+|+.+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999987644
No 384
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=90.70 E-value=0.5 Score=54.17 Aligned_cols=36 Identities=22% Similarity=0.356 Sum_probs=28.3
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEE
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMA 240 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 240 (1103)
...+++|+|..|+|||||++.++..+... .+.+++.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l~ 327 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLA 327 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEEe
Confidence 35799999999999999999999876543 3455553
No 385
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.69 E-value=0.083 Score=54.01 Aligned_cols=25 Identities=24% Similarity=0.419 Sum_probs=22.5
Q ss_pred EEEEeecCCChhHHHHHHHHHHHhc
Q 044579 207 IVGIWGMGGIGKTTIASVVFHQISR 231 (1103)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (1103)
+|+|.|..|+||||+|+.+...+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999987653
No 386
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=90.69 E-value=1.3 Score=47.37 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=19.8
Q ss_pred eEEEEEeecCCChhHHHHHHHHH
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFH 227 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~ 227 (1103)
...++|+|.+|+|||||...+..
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~ 142 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAK 142 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CceEEEEecCCCchHHHHHHHhc
Confidence 45688999999999999998774
No 387
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=90.68 E-value=3.7 Score=46.02 Aligned_cols=47 Identities=21% Similarity=0.207 Sum_probs=34.0
Q ss_pred CCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHH
Q 044579 182 DGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQ 228 (1103)
Q Consensus 182 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (1103)
..++|....++++.+.+..-...-..|.|.|..|+|||++|+.+...
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~ 183 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKL 183 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHH
T ss_pred hhhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHh
Confidence 35788887777776665532222223589999999999999988764
No 388
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=90.64 E-value=0.52 Score=54.49 Aligned_cols=29 Identities=24% Similarity=0.322 Sum_probs=24.4
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHhccCC
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQISRHFQ 234 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 234 (1103)
+.+.|.|.+|.||||++..+...+.....
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l~~~~~ 74 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEALISTGE 74 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 38999999999999999999987655443
No 389
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=90.55 E-value=9.4 Score=42.25 Aligned_cols=48 Identities=27% Similarity=0.293 Sum_probs=34.8
Q ss_pred CCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHH
Q 044579 182 DGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 182 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
..++|....+.++...+..-...-..|.|+|.+|.||+++|+.+...-
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s 176 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYS 176 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhc
Confidence 568898888877766654222222347799999999999999887643
No 390
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=90.54 E-value=0.13 Score=54.32 Aligned_cols=25 Identities=20% Similarity=0.404 Sum_probs=22.6
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHH
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
..+|+|.|+.|+||||+++.++.++
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999999775
No 391
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=90.46 E-value=0.16 Score=51.87 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=23.3
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHh
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
..+|.|.|+.|+||||+|+.+...+.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 46899999999999999999998764
No 392
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.46 E-value=0.13 Score=52.65 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.4
Q ss_pred EEEEeecCCChhHHHHHHHHHHH
Q 044579 207 IVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
.|+|.|++|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 393
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=90.40 E-value=0.25 Score=50.68 Aligned_cols=42 Identities=24% Similarity=0.259 Sum_probs=30.2
Q ss_pred hhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhcc
Q 044579 189 TRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRH 232 (1103)
Q Consensus 189 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (1103)
+..+.+...+. ....++|+|+|.+|+|||||+..+.......
T Consensus 16 ~~~~~~~~~~~--~~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 16 RLAEKNREALR--ESGTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp HHHHHHHHHHH--HHTCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhc--ccCceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 33444444443 2346799999999999999999999876544
No 394
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.33 E-value=0.13 Score=52.69 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=21.7
Q ss_pred EEEEEeecCCChhHHHHHHHHHHH
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
..|.|.|++|+||||+|+.++.++
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999876
No 395
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=90.31 E-value=0.23 Score=53.73 Aligned_cols=36 Identities=25% Similarity=0.314 Sum_probs=27.8
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEE
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMA 240 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 240 (1103)
...+++|+|..|+||||+++.++..+... .+.+.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~-~g~V~l~ 136 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL-GKKVMFC 136 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEE
Confidence 35699999999999999999999876544 3444443
No 396
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=90.27 E-value=0.25 Score=54.23 Aligned_cols=103 Identities=17% Similarity=0.146 Sum_probs=56.4
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHHHHHHhhhCCCCccccccchHHHHHhhcCC
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQRV 285 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k 285 (1103)
.+++|+|..|.|||||++.+...+.. -.+.+.+....+.... ... ..+. +.. . ........+...|..+
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~~e~~~~-~~~----~~i~-~~~---g-gg~~~r~~la~aL~~~ 240 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEEIVFK-HHK----NYTQ-LFF---G-GNITSADCLKSCLRMR 240 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESSCCCCCS-SCS----SEEE-EEC---B-TTBCHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCeeccccc-cch----hEEE-EEe---C-CChhHHHHHHHHhhhC
Confidence 37999999999999999998875533 3456666543211100 000 0000 000 0 1111222777888888
Q ss_pred ceEEEEeCCCCCHhHHHHHhCCCCccCCCc-EEEEEeCch
Q 044579 286 KVLIVLDDVNDEFTQLESLAGGVDRFSPGS-RIVITTRDK 324 (1103)
Q Consensus 286 ~~LlVLDdv~~~~~~l~~l~~~~~~~~~gs-~IIiTTR~~ 324 (1103)
+=++++|.+. ..+.++.+.. + ..|. .+|+||-..
T Consensus 241 p~ilildE~~-~~e~~~~l~~-~---~~g~~tvi~t~H~~ 275 (330)
T 2pt7_A 241 PDRIILGELR-SSEAYDFYNV-L---CSGHKGTLTTLHAG 275 (330)
T ss_dssp CSEEEECCCC-STHHHHHHHH-H---HTTCCCEEEEEECS
T ss_pred CCEEEEcCCC-hHHHHHHHHH-H---hcCCCEEEEEEccc
Confidence 8899999997 4343443322 1 1232 356666544
No 397
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.27 E-value=0.16 Score=54.44 Aligned_cols=24 Identities=25% Similarity=0.576 Sum_probs=21.6
Q ss_pred CeEEEEEeecCCChhHHHHHHHHH
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFH 227 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~ 227 (1103)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999983
No 398
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=90.26 E-value=0.11 Score=52.35 Aligned_cols=25 Identities=36% Similarity=0.502 Sum_probs=22.2
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHh
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
++++|+|+.|+|||||++.+...+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5789999999999999999987653
No 399
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=90.16 E-value=0.13 Score=61.78 Aligned_cols=50 Identities=20% Similarity=0.316 Sum_probs=39.8
Q ss_pred CCCCCccccchhHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhcc
Q 044579 179 TDLDGLVGLNTRIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRH 232 (1103)
Q Consensus 179 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (1103)
.....++|.+.-++.+...+..+ ..+.|+|.+|+||||||+.++..+...
T Consensus 38 ~~l~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 38 KLIDQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp SHHHHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred cccceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 33466899988888888777643 478999999999999999999865443
No 400
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.15 E-value=0.16 Score=51.43 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=21.9
Q ss_pred EEEEeecCCChhHHHHHHHHHHHh
Q 044579 207 IVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
+|+|.|+.|+||||+|+.++..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999988653
No 401
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=90.14 E-value=0.18 Score=52.86 Aligned_cols=47 Identities=21% Similarity=0.123 Sum_probs=30.3
Q ss_pred HHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHH-hccCCceEEEE
Q 044579 194 MKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQI-SRHFQGKCFMA 240 (1103)
Q Consensus 194 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~F~~~~~~~ 240 (1103)
|.++|..+-..-.++.|.|.+|+||||+|..++... ...-..++|+.
T Consensus 19 LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 19 FDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred HHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 334443222234589999999999999999987653 33334455554
No 402
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=90.11 E-value=0.89 Score=45.88 Aligned_cols=111 Identities=17% Similarity=0.122 Sum_probs=54.8
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEEechhhhcccChHHHHHHHHHhhhCCCCccccccchHHHHHhhcC
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMANVREKANKMGVIHVRDEVISQVLGENLKIGTLIVPQNIKKRLQR 284 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~ 284 (1103)
-.+..++|.-|.||||.|...+.+...+-..++.+..... ...+ ...+.+.+.. ............+.+.+.+
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d--~R~g----e~~i~s~~g~-~~~a~~~~~~~~~~~~~~~ 100 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCID--NRYS----EEDVVSHNGL-KVKAVPVSASKDIFKHITE 100 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC------------------------CCEEECSSGGGGGGGCCS
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC--Ccch----HHHHHhhcCC-eeEEeecCCHHHHHHHHhc
Confidence 4688999999999999999998877655444554431111 1111 1123333211 1110000111122233333
Q ss_pred CceEEEEeCCCC-CHhHHHHHhCCCCccCCCcEEEEEeCchh
Q 044579 285 VKVLIVLDDVND-EFTQLESLAGGVDRFSPGSRIVITTRDKQ 325 (1103)
Q Consensus 285 k~~LlVLDdv~~-~~~~l~~l~~~~~~~~~gs~IIiTTR~~~ 325 (1103)
+--+|++|.+.. +.++++.+.... ..|-.||+|-++.+
T Consensus 101 ~~dvViIDEaQF~~~~~V~~l~~l~---~~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 101 EMDVIAIDEVQFFDGDIVEVVQVLA---NRGYRVIVAGLDQD 139 (214)
T ss_dssp SCCEEEECCGGGSCTTHHHHHHHHH---HTTCEEEEEECSBC
T ss_pred CCCEEEEECcccCCHHHHHHHHHHh---hCCCEEEEEecccc
Confidence 334999999842 233444332211 24779999999654
No 403
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=90.09 E-value=0.35 Score=49.68 Aligned_cols=29 Identities=21% Similarity=0.297 Sum_probs=24.5
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHHHhcc
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQISRH 232 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (1103)
....|+|+|.+|+|||||+..+.......
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 46789999999999999999999865444
No 404
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.06 E-value=0.16 Score=55.41 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=22.5
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHh
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
.+|+|.|+.|+||||||+.++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998753
No 405
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=89.91 E-value=0.17 Score=52.27 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=22.1
Q ss_pred EEEEEeecCCChhHHHHHHHHHHH
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
.+|+|.|++|.||||+|+.++..+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998876
No 406
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=89.90 E-value=0.14 Score=54.03 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=23.1
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHh
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
..+|.|.|++|+||||+|+.+...+.
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999988753
No 407
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=89.90 E-value=0.17 Score=55.10 Aligned_cols=28 Identities=29% Similarity=0.349 Sum_probs=24.3
Q ss_pred CCeEEEEEeecCCChhHHHHHHHHHHHh
Q 044579 203 HDVRIVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
....+|+|.|..|+|||||++.+...+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 3457999999999999999999988654
No 408
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=89.89 E-value=0.37 Score=54.97 Aligned_cols=52 Identities=23% Similarity=0.330 Sum_probs=34.0
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHhc-cCCceEEEEechhhhcccChHHHHHHHHH
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQISR-HFQGKCFMANVREKANKMGVIHVRDEVIS 260 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~~~~~~~~~~~~~ll~ 260 (1103)
+-++|.|.+|+|||+|+..+.+.+.. +-+.++|. -+.+. .....++.+++..
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~-~iGER--~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFG-GVGER--TREGNDLYMEMKE 218 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEE-EESCC--SHHHHHHHHHHHH
T ss_pred CeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEE-EcccC--cHHHHHHHHhhhc
Confidence 46899999999999999999998654 33455554 34332 2234445555443
No 409
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=89.88 E-value=0.58 Score=55.50 Aligned_cols=33 Identities=24% Similarity=0.167 Sum_probs=25.8
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHhccCCceEE
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQISRHFQGKCF 238 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~ 238 (1103)
+++.|.|.+|.||||++..+...+...-..+..
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~ 237 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGL 237 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 588999999999999999999876554333333
No 410
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=89.86 E-value=0.2 Score=52.53 Aligned_cols=26 Identities=19% Similarity=0.385 Sum_probs=22.9
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHHH
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
...+|+|.|..|+|||||++.+...+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998765
No 411
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=89.82 E-value=0.18 Score=51.48 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=20.8
Q ss_pred EEEEeecCCChhHHHHHHHHHHH
Q 044579 207 IVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
.|+|.|+.|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999876
No 412
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=89.81 E-value=0.28 Score=48.22 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=23.8
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhc
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISR 231 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (1103)
.++++|.|..|+|||||++.+...+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 468999999999999999999987654
No 413
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=89.76 E-value=0.16 Score=51.42 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=21.9
Q ss_pred EEEEEeecCCChhHHHHHHHHHHH
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
..|+|.|+.|+||||+|+.+.+++
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999999998765
No 414
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=89.70 E-value=0.19 Score=51.45 Aligned_cols=23 Identities=35% Similarity=0.368 Sum_probs=20.8
Q ss_pred eEEEEEeecCCChhHHHHHHHHH
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFH 227 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~ 227 (1103)
..+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999875
No 415
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=89.67 E-value=0.19 Score=51.88 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=21.0
Q ss_pred EEEEeecCCChhHHHHHHHHHHH
Q 044579 207 IVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
.|+|.|+.|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998876
No 416
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=89.57 E-value=0.19 Score=48.52 Aligned_cols=26 Identities=31% Similarity=0.345 Sum_probs=23.1
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHHH
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
.-.+++|.|..|.|||||++.++.-+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34689999999999999999999865
No 417
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.56 E-value=0.18 Score=52.34 Aligned_cols=25 Identities=24% Similarity=0.205 Sum_probs=22.4
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHh
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
..|.|.|+.|+||||+|+.+++++.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999998763
No 418
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=89.55 E-value=0.26 Score=51.64 Aligned_cols=36 Identities=25% Similarity=0.170 Sum_probs=26.0
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHh-ccCCceEEEE
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQIS-RHFQGKCFMA 240 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~~~ 240 (1103)
-.+++|.|+.|+|||||++.++.... ..-...+++.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 35899999999999999999885322 2334455554
No 419
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=89.53 E-value=0.17 Score=51.47 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=21.9
Q ss_pred EEEEEeecCCChhHHHHHHHHHHH
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
.+++|.|+.|+|||||++.+....
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 589999999999999999998765
No 420
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=89.52 E-value=0.81 Score=51.94 Aligned_cols=52 Identities=21% Similarity=0.387 Sum_probs=33.3
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHhccC-CceEEEEechhhhcccChHHHHHHHHH
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQISRHF-QGKCFMANVREKANKMGVIHVRDEVIS 260 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~~~~~~~~~~~~~ll~ 260 (1103)
+-++|.|.+|+|||+|+..+++.+.... +.++|. -+.+. ...+.++.+++..
T Consensus 154 Qr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~-~iGER--~rEv~e~~~~~~~ 206 (482)
T 2ck3_D 154 GKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA-GVGER--TREGNDLYHEMIE 206 (482)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEE-EESCC--HHHHHHHHHHHHH
T ss_pred CeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEE-ECCCc--chHHHHHHHHhhh
Confidence 4689999999999999999998864433 344443 34332 2233444455443
No 421
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=89.45 E-value=0.3 Score=52.73 Aligned_cols=36 Identities=14% Similarity=0.095 Sum_probs=27.6
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhccCC-ceEEEE
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISRHFQ-GKCFMA 240 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~-~~~~~~ 240 (1103)
-.+++|.|.+|+|||||++.++..+...-. .+.|+.
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 358999999999999999999987654433 344553
No 422
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=89.36 E-value=0.34 Score=51.15 Aligned_cols=27 Identities=30% Similarity=0.302 Sum_probs=24.0
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHHHh
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
...++.+.|.||+||||++..++....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 357889999999999999999998776
No 423
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=89.31 E-value=0.19 Score=54.46 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=21.9
Q ss_pred EEEEEeecCCChhHHHHHHHHHHH
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
++|.|+|+.|+||||||+.++.++
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999999865
No 424
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=89.15 E-value=0.15 Score=50.03 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=23.3
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHhcc
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQISRH 232 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (1103)
++++|+|..|.|||||++.+...+...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 479999999999999999999866543
No 425
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=89.09 E-value=0.15 Score=52.37 Aligned_cols=25 Identities=24% Similarity=0.452 Sum_probs=22.1
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHH
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
..+++|+|+.|+|||||++.+....
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3589999999999999999998755
No 426
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=89.04 E-value=0.14 Score=55.06 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=20.3
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHHHh
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
...+|+|.|..|+||||+|+.+.+.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345899999999999999999988654
No 427
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=88.87 E-value=0.45 Score=48.48 Aligned_cols=27 Identities=26% Similarity=0.143 Sum_probs=22.7
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHhcc
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQISRH 232 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (1103)
-.|.+.|.||+||||+|..++.....+
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 347789999999999999999876554
No 428
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=88.85 E-value=0.39 Score=50.95 Aligned_cols=34 Identities=29% Similarity=0.413 Sum_probs=26.5
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHhccCCceEEE
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFM 239 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 239 (1103)
++|+|.|-||+||||+|..++..++.+-..++.+
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~Vlli 35 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVV 35 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 5778889999999999999998877553334444
No 429
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=88.84 E-value=0.36 Score=52.47 Aligned_cols=36 Identities=25% Similarity=0.366 Sum_probs=28.1
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEE
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFM 239 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 239 (1103)
..++|+|+|-||+||||+|..++..++.+-..++.+
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~Vlli 75 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI 75 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 467888889999999999999998776653334444
No 430
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=88.71 E-value=0.2 Score=51.44 Aligned_cols=26 Identities=12% Similarity=0.204 Sum_probs=23.0
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHh
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
-.+++|+|+.|+|||||.+.+.....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 45899999999999999999988654
No 431
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=88.64 E-value=0.21 Score=49.85 Aligned_cols=24 Identities=29% Similarity=0.302 Sum_probs=21.5
Q ss_pred EEEEeecCCChhHHHHHHHHHHHh
Q 044579 207 IVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
+++|+|..|+|||||++.++..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 689999999999999999998654
No 432
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=88.53 E-value=0.33 Score=53.28 Aligned_cols=50 Identities=14% Similarity=0.185 Sum_probs=33.9
Q ss_pred HHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhcc------CCceEEEE
Q 044579 191 IEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISRH------FQGKCFMA 240 (1103)
Q Consensus 191 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------F~~~~~~~ 240 (1103)
...|..+|..+-..-.++.|+|.+|+||||||..++...... -..++|+.
T Consensus 93 ~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~ 148 (324)
T 2z43_A 93 SQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID 148 (324)
T ss_dssp CHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred chhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 345555554222234589999999999999999999865332 23466765
No 433
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=88.51 E-value=0.16 Score=55.32 Aligned_cols=25 Identities=16% Similarity=0.347 Sum_probs=22.2
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHH
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
.++|.|.|+.|+||||||..++.++
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 3589999999999999999998754
No 434
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=88.28 E-value=0.31 Score=54.33 Aligned_cols=27 Identities=26% Similarity=0.161 Sum_probs=23.4
Q ss_pred CCeEEEEEeecCCChhHHHHHHHHHHH
Q 044579 203 HDVRIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
...++++|+|+.|.|||||++.++...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 445699999999999999999999754
No 435
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=88.19 E-value=0.23 Score=53.27 Aligned_cols=24 Identities=25% Similarity=0.493 Sum_probs=21.6
Q ss_pred EEEEEeecCCChhHHHHHHHHHHH
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
++|+|.|+.|+||||||..++.++
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC
Confidence 589999999999999999998754
No 436
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=88.13 E-value=0.43 Score=51.41 Aligned_cols=36 Identities=22% Similarity=0.231 Sum_probs=27.6
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEE
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMA 240 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 240 (1103)
..++++|+|.+|+||||++..++..++.. ...+.+.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~-~~~v~l~ 132 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLV 132 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEe
Confidence 35789999999999999999999877654 3344443
No 437
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=88.07 E-value=0.26 Score=53.40 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=20.9
Q ss_pred EEEEEeecCCChhHHHHHHHHHH
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQ 228 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~ 228 (1103)
.+|.|.|++|+||||+|+.+..+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 438
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=87.96 E-value=0.31 Score=52.22 Aligned_cols=25 Identities=20% Similarity=0.216 Sum_probs=22.5
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHH
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
.++|.|.|+.|+||||||..++.++
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4689999999999999999998764
No 439
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=87.96 E-value=0.3 Score=53.15 Aligned_cols=28 Identities=32% Similarity=0.325 Sum_probs=24.2
Q ss_pred CCeEEEEEeecCCChhHHHHHHHHHHHh
Q 044579 203 HDVRIVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
....+|+|.|..|+|||||++.+...+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457999999999999999999987664
No 440
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=87.92 E-value=0.39 Score=55.66 Aligned_cols=28 Identities=0% Similarity=-0.033 Sum_probs=24.8
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHHHhc
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQISR 231 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (1103)
...+|.+.|+.|.||||+|++++.++..
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 3478999999999999999999998764
No 441
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=87.90 E-value=0.46 Score=50.79 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=22.8
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHhc
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQISR 231 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (1103)
.+++|+|.+|+||||||..++..+..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 58999999999999999999976543
No 442
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=87.78 E-value=0.48 Score=50.91 Aligned_cols=34 Identities=26% Similarity=0.439 Sum_probs=26.2
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHhccCCceEEE
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFM 239 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 239 (1103)
++|+|.|-||+||||+|..++..++.+-..++.+
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~G~rVlli 36 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIV 36 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 6788899999999999999998776543233433
No 443
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=87.72 E-value=0.31 Score=50.71 Aligned_cols=26 Identities=23% Similarity=0.357 Sum_probs=23.0
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHHH
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
...+|+|.|+.|+||||+++.++.++
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998765
No 444
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=87.72 E-value=0.7 Score=50.98 Aligned_cols=31 Identities=23% Similarity=0.287 Sum_probs=25.6
Q ss_pred CCCeEEEEEeecCCChhHHHHHHHHHHHhcc
Q 044579 202 SHDVRIVGIWGMGGIGKTTIASVVFHQISRH 232 (1103)
Q Consensus 202 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (1103)
.....+|+|.|.+|+||||++..+.......
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~ 83 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE 83 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 3456899999999999999999998765443
No 445
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=87.68 E-value=0.18 Score=52.31 Aligned_cols=24 Identities=33% Similarity=0.396 Sum_probs=16.0
Q ss_pred EEEEEeecCCChhHHHHHHHH-HHH
Q 044579 206 RIVGIWGMGGIGKTTIASVVF-HQI 229 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~-~~~ 229 (1103)
.+++|.|+.|+|||||++.+. ...
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 589999999999999999998 654
No 446
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=87.53 E-value=0.25 Score=50.20 Aligned_cols=23 Identities=39% Similarity=0.252 Sum_probs=20.7
Q ss_pred EEEEEeecCCChhHHHHHHHHHH
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQ 228 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~ 228 (1103)
.+++|.|..|.|||||++.++--
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999998864
No 447
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=87.43 E-value=0.85 Score=46.40 Aligned_cols=28 Identities=21% Similarity=0.243 Sum_probs=24.6
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhcc
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISRH 232 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (1103)
...|.|.|+.|+||||+++.+.+.+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 3589999999999999999999987654
No 448
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=87.26 E-value=0.36 Score=49.86 Aligned_cols=28 Identities=29% Similarity=0.476 Sum_probs=24.7
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHHHhc
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQISR 231 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (1103)
...+|+|.|+.|+||||+++.+...+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3468999999999999999999998765
No 449
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=87.25 E-value=0.26 Score=49.01 Aligned_cols=23 Identities=30% Similarity=0.293 Sum_probs=20.9
Q ss_pred EEEEEeecCCChhHHHHHHHHHH
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQ 228 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~ 228 (1103)
+.|.|.|..|+||||||.+++.+
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 56889999999999999999875
No 450
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=87.16 E-value=0.27 Score=56.06 Aligned_cols=35 Identities=23% Similarity=0.307 Sum_probs=27.1
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhccCCceEEE
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFM 239 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 239 (1103)
.++|+|+|.+|+||||+|..++...+.+-..+.++
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv 133 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALI 133 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 56899999999999999999998765442334444
No 451
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=87.13 E-value=0.29 Score=50.92 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=20.6
Q ss_pred EEEEEeecCCChhHHHHHHHHH
Q 044579 206 RIVGIWGMGGIGKTTIASVVFH 227 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~ 227 (1103)
.+++|.|..|.|||||.+.++-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999885
No 452
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=87.07 E-value=0.52 Score=55.19 Aligned_cols=30 Identities=17% Similarity=0.161 Sum_probs=25.4
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHHHhccC
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQISRHF 233 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 233 (1103)
...+|.++|++|.||||+|++++..+...|
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 346899999999999999999998775444
No 453
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=86.95 E-value=0.34 Score=53.64 Aligned_cols=38 Identities=24% Similarity=0.292 Sum_probs=28.6
Q ss_pred HHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHH
Q 044579 192 EEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 192 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
..|..+|..+-..-.++.|+|..|+|||||++.++...
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34445554333345799999999999999999999865
No 454
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=86.89 E-value=0.28 Score=50.57 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=20.1
Q ss_pred EEEEEeecCCChhHHHHHHHHH
Q 044579 206 RIVGIWGMGGIGKTTIASVVFH 227 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~ 227 (1103)
.+++|.|..|.|||||.+.++-
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999998874
No 455
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=86.64 E-value=0.25 Score=56.25 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=23.1
Q ss_pred CCeEEEEEeecCCChhHHHHHHHHHHH
Q 044579 203 HDVRIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
....+|.|+|++|+||||+|++++.+.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 346789999999999999999988654
No 456
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=86.63 E-value=0.38 Score=50.16 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=22.9
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHh
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
...|+|.|..|+||||+++.+++.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999998764
No 457
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=86.63 E-value=0.28 Score=50.92 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=20.1
Q ss_pred EEEEEeecCCChhHHHHHHHHH
Q 044579 206 RIVGIWGMGGIGKTTIASVVFH 227 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~ 227 (1103)
.+++|+|+.|.|||||.+.++-
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999998874
No 458
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=86.63 E-value=0.36 Score=48.15 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.3
Q ss_pred eEEEEEeecCCChhHHHHHHHHHH
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQ 228 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~ 228 (1103)
.-.|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999998864
No 459
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=86.63 E-value=0.38 Score=48.56 Aligned_cols=25 Identities=20% Similarity=0.147 Sum_probs=23.0
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHh
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
.+|.|.|+.|+||||+|+.++.++.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 4899999999999999999999874
No 460
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=86.38 E-value=0.73 Score=50.41 Aligned_cols=36 Identities=31% Similarity=0.374 Sum_probs=28.1
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEE
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMA 240 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 240 (1103)
.+++...|-||+||||+|..++..++..-..+..+.
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 49 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVIS 49 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEe
Confidence 567788899999999999999998776644444443
No 461
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=86.34 E-value=0.42 Score=53.26 Aligned_cols=25 Identities=20% Similarity=0.489 Sum_probs=22.5
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHh
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQIS 230 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (1103)
.+|+|.|+.|+||||||..++.++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5899999999999999999998763
No 462
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=86.33 E-value=0.42 Score=46.96 Aligned_cols=29 Identities=17% Similarity=0.189 Sum_probs=23.1
Q ss_pred EEEeecCCChhHHHHHHHHHHHhccCCceEEEE
Q 044579 208 VGIWGMGGIGKTTIASVVFHQISRHFQGKCFMA 240 (1103)
Q Consensus 208 v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 240 (1103)
+.|+|.+|+||||+|.+++.+ -..++++.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~----~~~~~yia 30 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD----APQVLYIA 30 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS----CSSEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHhc----CCCeEEEe
Confidence 679999999999999998854 13466665
No 463
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=86.17 E-value=0.62 Score=46.96 Aligned_cols=35 Identities=23% Similarity=0.299 Sum_probs=26.4
Q ss_pred EEEEEe-ecCCChhHHHHHHHHHHHhccCCceEEEE
Q 044579 206 RIVGIW-GMGGIGKTTIASVVFHQISRHFQGKCFMA 240 (1103)
Q Consensus 206 ~vv~I~-G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 240 (1103)
++|+|+ +-||+||||+|..++..+..+-..++.+.
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD 37 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVD 37 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEE
Confidence 577777 68999999999999988766534444443
No 464
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=86.14 E-value=1 Score=60.31 Aligned_cols=50 Identities=26% Similarity=0.197 Sum_probs=35.9
Q ss_pred HHHHHHhhc-ccCCCeEEEEEeecCCChhHHHHHHHHHHHhccCCceEEEE
Q 044579 191 IEEMKSLLC-LESHDVRIVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMA 240 (1103)
Q Consensus 191 ~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 240 (1103)
...|..+|. .+-...+.|.|+|++|+|||+||.+++.....+=..+.|+.
T Consensus 1412 ~~~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~ 1462 (2050)
T 3cmu_A 1412 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 1462 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CHHHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 344555654 22233568999999999999999999987665545566765
No 465
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=86.08 E-value=0.44 Score=45.64 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.2
Q ss_pred EEEEEeecCCChhHHHHHHHHHH
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQ 228 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~ 228 (1103)
+-|+|.|.+|+|||||+.++...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999998863
No 466
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=86.07 E-value=0.37 Score=59.82 Aligned_cols=52 Identities=23% Similarity=0.353 Sum_probs=39.4
Q ss_pred CCccccchhHHHHHHhhccc-----------CCCeEEEEEeecCCChhHHHHHHHHHHHhccC
Q 044579 182 DGLVGLNTRIEEMKSLLCLE-----------SHDVRIVGIWGMGGIGKTTIASVVFHQISRHF 233 (1103)
Q Consensus 182 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 233 (1103)
.+++|.+...+.+.+.+... -...+.+.++|++|+||||||++++......|
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~ 539 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF 539 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCC
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 56788888888887766421 12245688999999999999999999875444
No 467
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=86.00 E-value=0.32 Score=50.60 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=20.8
Q ss_pred EEEEEeecCCChhHHHHHHHHHH
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQ 228 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~ 228 (1103)
.+++|+|..|.|||||++.++.-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999998853
No 468
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=85.98 E-value=0.65 Score=46.95 Aligned_cols=29 Identities=28% Similarity=0.579 Sum_probs=25.2
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHhccCC
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQISRHFQ 234 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 234 (1103)
+.|+|-|.-|+||||+++.+++.+...++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~ 31 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYD 31 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSC
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCC
Confidence 47889999999999999999998876554
No 469
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=85.94 E-value=1 Score=52.74 Aligned_cols=55 Identities=9% Similarity=-0.043 Sum_probs=38.3
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHHHhcc-CCceEEEEechhhhcccChHHHHHHHHHhhhC
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQISRH-FQGKCFMANVREKANKMGVIHVRDEVISQVLG 264 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 264 (1103)
.-.++.|.|.+|+||||+|..++.....+ =..++|+. -.....++...++....+
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s------~E~s~~~l~~r~~~~~~~ 296 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM------LEESVEETAEDLIGLHNR 296 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE------SSSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe------ccCCHHHHHHHHHHHHcC
Confidence 34689999999999999999999887655 33566664 233445566666555443
No 470
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=85.81 E-value=0.38 Score=50.46 Aligned_cols=22 Identities=23% Similarity=0.495 Sum_probs=20.4
Q ss_pred EEEEEeecCCChhHHHHHHHHH
Q 044579 206 RIVGIWGMGGIGKTTIASVVFH 227 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~ 227 (1103)
.+++|.|..|.|||||++.++-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999886
No 471
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=85.79 E-value=0.43 Score=46.20 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=19.9
Q ss_pred EEEEEeecCCChhHHHHHHHHH
Q 044579 206 RIVGIWGMGGIGKTTIASVVFH 227 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~ 227 (1103)
..|+|+|.+|+|||||.+.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999875
No 472
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=85.79 E-value=0.33 Score=51.67 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=20.1
Q ss_pred EEEEEeecCCChhHHHHHHHHH
Q 044579 206 RIVGIWGMGGIGKTTIASVVFH 227 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~ 227 (1103)
.+++|+|+.|.|||||++.++-
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 4899999999999999998874
No 473
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=85.60 E-value=1.1 Score=49.35 Aligned_cols=29 Identities=28% Similarity=0.368 Sum_probs=24.6
Q ss_pred CCeEEEEEeecCCChhHHHHHHHHHHHhc
Q 044579 203 HDVRIVGIWGMGGIGKTTIASVVFHQISR 231 (1103)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (1103)
....+++|.|.+|+|||||.+.+......
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 45679999999999999999999876543
No 474
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=85.58 E-value=0.56 Score=55.08 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=24.2
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhc
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISR 231 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (1103)
..+++|.|+.|+|||||++.++..+..
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 468999999999999999999988754
No 475
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=85.56 E-value=0.62 Score=46.29 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=20.9
Q ss_pred eEEEEEeecCCChhHHHHHHHHHH
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQ 228 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~ 228 (1103)
...|+|+|.+|+|||||...+...
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999998763
No 476
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=85.52 E-value=0.34 Score=51.20 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.6
Q ss_pred eEEEEEeecCCChhHHHHHHHHH
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFH 227 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~ 227 (1103)
-.+++|.|..|.|||||.+.++-
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999998875
No 477
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=85.50 E-value=0.4 Score=50.84 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.8
Q ss_pred EEEEEeecCCChhHHHHHHHHHH
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQ 228 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~ 228 (1103)
.+++|+|..|.|||||++.++--
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999998863
No 478
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=85.49 E-value=0.4 Score=48.18 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=20.9
Q ss_pred eEEEEEeecCCChhHHHHHHHHHH
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQ 228 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~ 228 (1103)
...|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 346899999999999999998863
No 479
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=85.42 E-value=0.35 Score=51.25 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=20.2
Q ss_pred EEEEEeecCCChhHHHHHHHHH
Q 044579 206 RIVGIWGMGGIGKTTIASVVFH 227 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~ 227 (1103)
.+++|+|..|.|||||++.++-
T Consensus 38 e~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 4899999999999999999875
No 480
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=85.40 E-value=0.35 Score=50.36 Aligned_cols=22 Identities=41% Similarity=0.540 Sum_probs=20.2
Q ss_pred EEEEEeecCCChhHHHHHHHHH
Q 044579 206 RIVGIWGMGGIGKTTIASVVFH 227 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~ 227 (1103)
.+++|+|..|.|||||.+.++-
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999875
No 481
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=85.33 E-value=0.78 Score=51.89 Aligned_cols=29 Identities=28% Similarity=0.258 Sum_probs=25.2
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHHHhcc
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQISRH 232 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (1103)
..++++|+|.+|+||||++..++..++.+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 35789999999999999999999877655
No 482
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=85.30 E-value=0.87 Score=47.33 Aligned_cols=35 Identities=23% Similarity=0.232 Sum_probs=26.3
Q ss_pred eEEEEEe-ecCCChhHHHHHHHHHHHhcc-CCceEEE
Q 044579 205 VRIVGIW-GMGGIGKTTIASVVFHQISRH-FQGKCFM 239 (1103)
Q Consensus 205 ~~vv~I~-G~gGiGKTtLA~~v~~~~~~~-F~~~~~~ 239 (1103)
.++|+|+ +-||+||||+|..++..+..+ =..++.+
T Consensus 4 ~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~Vlli 40 (245)
T 3ea0_A 4 KRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAV 40 (245)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEE
T ss_pred CeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEE
Confidence 4677777 469999999999999988776 3334444
No 483
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=85.27 E-value=0.31 Score=49.72 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=20.1
Q ss_pred EEEEEeecCCChhHHHHHHHHH
Q 044579 206 RIVGIWGMGGIGKTTIASVVFH 227 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~ 227 (1103)
.+++|.|..|.|||||.+.++-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999875
No 484
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=85.19 E-value=0.9 Score=46.67 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=21.6
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhcc
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISRH 232 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (1103)
...|.|-|+.|+||||+++.+++.+...
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 3579999999999999999999987654
No 485
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=85.19 E-value=0.36 Score=50.95 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.6
Q ss_pred eEEEEEeecCCChhHHHHHHHHH
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFH 227 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~ 227 (1103)
-.+++|.|..|.|||||++.++-
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEEcCCCCcHHHHHHHHHc
Confidence 35899999999999999999875
No 486
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=85.18 E-value=0.36 Score=50.86 Aligned_cols=22 Identities=32% Similarity=0.449 Sum_probs=20.2
Q ss_pred EEEEEeecCCChhHHHHHHHHH
Q 044579 206 RIVGIWGMGGIGKTTIASVVFH 227 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~ 227 (1103)
.+++|+|..|.|||||.+.++-
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999874
No 487
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=85.18 E-value=0.64 Score=52.29 Aligned_cols=51 Identities=12% Similarity=0.083 Sum_probs=33.2
Q ss_pred hHHHHHHhhcccCCCeEEEEEeecCCChhHHHHHHHHHHHhc------cCCceEEEE
Q 044579 190 RIEEMKSLLCLESHDVRIVGIWGMGGIGKTTIASVVFHQISR------HFQGKCFMA 240 (1103)
Q Consensus 190 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~F~~~~~~~ 240 (1103)
-+..|..+|..+-..-.++.|+|.+|+|||||++.++-.... .-..++|+.
T Consensus 163 G~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid 219 (400)
T 3lda_A 163 GSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYID 219 (400)
T ss_dssp SCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred CChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEe
Confidence 345566666432223468999999999999999987643321 223466765
No 488
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=85.15 E-value=0.39 Score=50.11 Aligned_cols=23 Identities=35% Similarity=0.397 Sum_probs=20.8
Q ss_pred eEEEEEeecCCChhHHHHHHHHH
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFH 227 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~ 227 (1103)
-.+++|+|..|.|||||++.++-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999885
No 489
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=85.14 E-value=0.37 Score=49.78 Aligned_cols=23 Identities=22% Similarity=0.531 Sum_probs=20.8
Q ss_pred EEEEEeecCCChhHHHHHHHHHH
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQ 228 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~ 228 (1103)
.+++|+|..|.|||||.+.++--
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999998864
No 490
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=85.13 E-value=1 Score=46.50 Aligned_cols=35 Identities=23% Similarity=0.356 Sum_probs=27.1
Q ss_pred eEEEEEeecCCChhHHHHHHHHHHHhcc-CCceEEE
Q 044579 205 VRIVGIWGMGGIGKTTIASVVFHQISRH-FQGKCFM 239 (1103)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~ 239 (1103)
...|.|.|..|+||||+++.+++.+... +..+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~ 62 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRT 62 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeee
Confidence 3589999999999999999999987554 4424443
No 491
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=85.09 E-value=0.35 Score=47.89 Aligned_cols=21 Identities=33% Similarity=0.395 Sum_probs=19.0
Q ss_pred EEEEeecCCChhHHHHHHHHH
Q 044579 207 IVGIWGMGGIGKTTIASVVFH 227 (1103)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~ 227 (1103)
-|+|+|.+|+|||||++.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999875
No 492
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=85.08 E-value=0.46 Score=45.56 Aligned_cols=22 Identities=23% Similarity=0.543 Sum_probs=19.5
Q ss_pred EEEEeecCCChhHHHHHHHHHH
Q 044579 207 IVGIWGMGGIGKTTIASVVFHQ 228 (1103)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~ 228 (1103)
-|++.|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998863
No 493
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=85.03 E-value=0.42 Score=51.45 Aligned_cols=26 Identities=15% Similarity=0.319 Sum_probs=22.8
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHHH
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQI 229 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (1103)
.-.+++|+|+.|.|||||++.+..-+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 34589999999999999999998765
No 494
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=84.99 E-value=0.38 Score=50.36 Aligned_cols=22 Identities=32% Similarity=0.681 Sum_probs=20.1
Q ss_pred EEEEEeecCCChhHHHHHHHHH
Q 044579 206 RIVGIWGMGGIGKTTIASVVFH 227 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~ 227 (1103)
.+++|+|..|.|||||++.++-
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999875
No 495
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=84.98 E-value=1.1 Score=45.41 Aligned_cols=34 Identities=29% Similarity=0.469 Sum_probs=26.4
Q ss_pred EEEEEeecCCChhHHHHHHHHHHHhcc-CCceEEE
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQISRH-FQGKCFM 239 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~ 239 (1103)
..|.+-|..|+||||+++.+++.+... +..+.+.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~ 38 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFT 38 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceee
Confidence 478999999999999999999987554 3234443
No 496
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=84.93 E-value=1.1 Score=45.84 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=24.7
Q ss_pred CeEEEEEeecCCChhHHHHHHHHHHHhc
Q 044579 204 DVRIVGIWGMGGIGKTTIASVVFHQISR 231 (1103)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (1103)
....|.|.|..|+||||+++.+.+.+..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3568999999999999999999998765
No 497
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=84.90 E-value=1.3 Score=44.50 Aligned_cols=34 Identities=15% Similarity=0.242 Sum_probs=27.3
Q ss_pred EEEEeecCCChhHHHHHHHHHHHhccCCceEEEE
Q 044579 207 IVGIWGMGGIGKTTIASVVFHQISRHFQGKCFMA 240 (1103)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 240 (1103)
.|+|-|.-|+||||.++.+++.+..+-..+++..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 4788899999999999999998877655555443
No 498
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=84.86 E-value=0.39 Score=50.54 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=20.3
Q ss_pred EEEEEeecCCChhHHHHHHHHH
Q 044579 206 RIVGIWGMGGIGKTTIASVVFH 227 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~ 227 (1103)
.+++|.|..|.|||||.+.++-
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999875
No 499
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=84.76 E-value=0.65 Score=48.48 Aligned_cols=32 Identities=25% Similarity=0.504 Sum_probs=25.0
Q ss_pred EEEeecCCChhHHHHHHHHHHHhccCCceEEE
Q 044579 208 VGIWGMGGIGKTTIASVVFHQISRHFQGKCFM 239 (1103)
Q Consensus 208 v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 239 (1103)
|+|.|-||+||||+|..++..+..+-..++.+
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~Vlli 34 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAV 34 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 56699999999999999999887654344444
No 500
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=84.57 E-value=0.4 Score=50.59 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.7
Q ss_pred EEEEEeecCCChhHHHHHHHHHH
Q 044579 206 RIVGIWGMGGIGKTTIASVVFHQ 228 (1103)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~ 228 (1103)
.+++|+|..|.|||||++.++--
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 48999999999999999998753
Done!