BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044580
(269 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KC2|A Chain A, Crystal Structure Of Mitochondrial Had-Like Phosphatase
From Saccharomyces Cerevisiae
pdb|3KC2|B Chain B, Crystal Structure Of Mitochondrial Had-Like Phosphatase
From Saccharomyces Cerevisiae
Length = 352
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 111/215 (51%), Gaps = 19/215 (8%)
Query: 59 AFDIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGV 118
AFDIDGV+ G PI G++ ALK L ++ +IPYI LTNGGGF E R +S L V
Sbjct: 17 AFDIDGVLFRGKKPIAGASDALKLLNRN----KIPYILLTNGGGFSERARTEFISSKLDV 72
Query: 119 NILPCQVVQGHSPFKQLFNRFENEFIVAVGKGEPAAVMAEYGFKNVLSIDEYASYFDGID 178
++ P Q++Q H+P+K L N++ I+AVG V YGF++V+ + Y I
Sbjct: 73 DVSPLQIIQSHTPYKSLVNKYSR--ILAVGTPSVRGVAEGYGFQDVVHQTDIVRYNRDIA 130
Query: 179 PLAQYKKWNIKHAASENSTFKEMAPTICSQRVQAAFIVSDSVDWSRDIQVLCDILRT--G 236
P + + + + P + +++ A + +D DW+ DIQ++ D + + G
Sbjct: 131 PFSGLSDEQVXEYSRD-------IPDLTTKKFDAVLVFNDPHDWAADIQIISDAINSENG 183
Query: 237 GLPG--RETGHQPH--LYFANDDLEYQVLLKLGYF 267
L E +P +YF+N DL + KL F
Sbjct: 184 XLNTLRNEKSGKPSIPIYFSNQDLLWANPYKLNRF 218
>pdb|3RF6|A Chain A, Crystal Structure Of Glycerol-3 Phosphate Bound Had-Like
Phosphatase From Saccharomyces Cerevisiae
pdb|3RF6|B Chain B, Crystal Structure Of Glycerol-3 Phosphate Bound Had-Like
Phosphatase From Saccharomyces Cerevisiae
Length = 355
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 110/215 (51%), Gaps = 19/215 (8%)
Query: 59 AFDIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGV 118
AF IDGV+ G PI G++ ALK L ++ +IPYI LTNGGGF E R +S L V
Sbjct: 20 AFAIDGVLFRGKKPIAGASDALKLLNRN----KIPYILLTNGGGFSERARTEFISSKLDV 75
Query: 119 NILPCQVVQGHSPFKQLFNRFENEFIVAVGKGEPAAVMAEYGFKNVLSIDEYASYFDGID 178
++ P Q++Q H+P+K L N++ I+AVG V YGF++V+ + Y I
Sbjct: 76 DVSPLQIIQSHTPYKSLVNKYSR--ILAVGTPSVRGVAEGYGFQDVVHQTDIVRYNRDIA 133
Query: 179 PLAQYKKWNIKHAASENSTFKEMAPTICSQRVQAAFIVSDSVDWSRDIQVLCDILRT-GG 237
P + + + + P + +++ A + +D DW+ DIQ++ D + + G
Sbjct: 134 PFSGLSDEQVMEYSRD-------IPDLTTKKFDAVLVFNDPHDWAADIQIISDAINSENG 186
Query: 238 LPG---RETGHQPH--LYFANDDLEYQVLLKLGYF 267
+ E +P +YF+N DL + KL F
Sbjct: 187 MLNTLRNEKSGKPSIPIYFSNQDLLWANPYKLNRF 221
>pdb|1AI4|B Chain B, Penicillin Acylase Complexed With
3,4-Dihydroxyphenylacetic Acid
pdb|1AI5|B Chain B, Penicillin Acylase Complexed With M-Nitrophenylacetic Acid
pdb|1AI6|B Chain B, Penicillin Acylase With P-Hydroxyphenylacetic Acid
pdb|1AI7|B Chain B, Penicillin Acylase Complexed With Phenol
pdb|1AJN|B Chain B, Penicillin Acylase Complexed With P-Nitrophenylacetic Acid
pdb|1AJP|B Chain B, Penicillin Acylase Complexed With
2,5-Dihydroxyphenylacetic Acid
pdb|1AJQ|B Chain B, Penicillin Acylase Complexed With Thiopheneacetic Acid
Length = 557
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 181 AQYKKWNIKHAASENSTFKEMAPTICSQRVQAAFIVSDSVDWS-RDIQVLCDILRTGGLP 239
A+ + W+ K AS + +M Q Q A + +++W D+ + TG P
Sbjct: 138 AKSRAWDGKEVASLLAWTHQMKAKNWQQWTQQAAKQALTINWYYADVNGNIGYVHTGAYP 197
Query: 240 GRETGHQPHL 249
R++GH P L
Sbjct: 198 DRQSGHDPRL 207
>pdb|4GQS|A Chain A, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|B Chain B, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|C Chain C, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|D Chain D, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
Length = 477
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 27/60 (45%)
Query: 106 SKRATELSKLLGVNILPCQVVQGHSPFKQLFNRFENEFIVAVGKGEPAAVMAEYGFKNVL 165
+K E+ +++G N PC +GH P+ +I + P AV + F+N L
Sbjct: 304 AKVQEEIERVVGRNRSPCMQDRGHMPYTDAVVHEVQRYIDLIPTSLPHAVTCDVKFRNYL 363
>pdb|1ZJJ|A Chain A, Crystal Structure Of Hypothetical Protein Ph1952 From
Pyrococcus Horikoshii Ot3
pdb|1ZJJ|B Chain B, Crystal Structure Of Hypothetical Protein Ph1952 From
Pyrococcus Horikoshii Ot3
Length = 263
Score = 30.8 bits (68), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 58 IAFDIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTN 99
I FD+DGV+ GN I G + ++ L + IP+ FLTN
Sbjct: 4 IIFDMDGVLYRGNRAIPGVRELIEFLKERG----IPFAFLTN 41
>pdb|1PNK|B Chain B, Penicillin Acylase Has A Single-amino-acid Catalytic
Centre
pdb|1PNL|B Chain B, Penicillin Acylase Has A Single-amino-acid Catalytic
Centre
pdb|1PNM|B Chain B, Penicillin Acylase Has A Single-Amino-Acid Catalytic
Centre
pdb|1GM9|B Chain B, Crystal Structures Of Penicillin Acylase Enzyme-Substrate
Complexes: Structural Insights Into The Catalytic
Mechanism
pdb|1GK9|B Chain B, Crystal Structures Of Penicillin Acylase Enzyme-Substrate
Complexes: Structural Insights Into The Catalytic
Mechanism
pdb|1K7D|B Chain B, Penicillin Acylase With Phenyl Proprionic Acid
Length = 557
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 181 AQYKKWNIKHAASENSTFKEMAPTICSQRVQAAFIVSDSVDWS-RDIQVLCDILRTGGLP 239
A+ + W+ K AS + +M + Q A + +++W D+ + TG P
Sbjct: 138 AKSRAWDGKEVASLLAWTHQMKAKNWQEWTQQAAKQALTINWYYADVNGNIGYVHTGAYP 197
Query: 240 GRETGHQPHL 249
R++GH P L
Sbjct: 198 DRQSGHDPRL 207
>pdb|1H2G|B Chain B, Altered Substrate Specificity Mutant Of Penicillin Acylase
Length = 557
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 181 AQYKKWNIKHAASENSTFKEMAPTICSQRVQAAFIVSDSVDWS-RDIQVLCDILRTGGLP 239
A+ + W+ K AS + +M + Q A + +++W D+ + TG P
Sbjct: 138 AKSRAWDGKEVASLLAWTHQMKAKNWQEWTQQAAKQALTINWYYADVNGNIGYVHTGAYP 197
Query: 240 GRETGHQPHL 249
R++GH P L
Sbjct: 198 DRQSGHDPRL 207
>pdb|1GM8|B Chain B, Crystal Structures Of Penicillin Acylase Enzyme-Substrate
Complexes: Structural Insights Into The Catalytic
Mechanism
pdb|1GM7|B Chain B, Crystal Structures Of Penicillin Acylase Enzyme-Substrate
Complexes: Structural Insights Into The Catalytic
Mechanism
pdb|1GKF|B Chain B, Crystal Structures Of Penicillin Acylase Enzyme-Substrate
Complexes: Structural Insights Into The Catalytic
Mechanism
Length = 557
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 181 AQYKKWNIKHAASENSTFKEMAPTICSQRVQAAFIVSDSVDWS-RDIQVLCDILRTGGLP 239
A+ + W+ K AS + +M + Q A + +++W D+ + TG P
Sbjct: 138 AKSRAWDGKEVASLLAWTHQMKAKNWQEWTQQAAKQALTINWYYADVNGNIGYVHTGAYP 197
Query: 240 GRETGHQPHL 249
R++GH P L
Sbjct: 198 DRQSGHDPRL 207
>pdb|1E3A|B Chain B, A Slow Processing Precursor Penicillin Acylase From
Escherichia Coli
Length = 560
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 181 AQYKKWNIKHAASENSTFKEMAPTICSQRVQAAFIVSDSVDWS-RDIQVLCDILRTGGLP 239
A+ + W+ K AS + +M + Q A + +++W D+ + TG P
Sbjct: 141 AKSRAWDGKEVASLLAWTHQMKAKNWQEWTQQAAKQALTINWYYADVNGNIGYVHTGAYP 200
Query: 240 GRETGHQPHL 249
R++GH P L
Sbjct: 201 DRQSGHDPRL 210
>pdb|1KEC|B Chain B, Penicillin Acylase Mutant With Phenyl Proprionic Acid
Length = 557
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 181 AQYKKWNIKHAASENSTFKEMAPTICSQRVQAAFIVSDSVDWS-RDIQVLCDILRTGGLP 239
A+ + W+ K AS + +M + Q A + +++W D+ + TG P
Sbjct: 138 AKSRAWDGKELASLLAWTHQMKAKNWQEWTQQAAKQALTINWYYADVNGNIGYVHTGAYP 197
Query: 240 GRETGHQPHL 249
R++GH P L
Sbjct: 198 DRQSGHDPRL 207
>pdb|1FXH|B Chain B, Mutant Of Penicillin Acylase Impaired In Catalysis With
Phenylacetic Acid In The Active Site
pdb|1FXV|B Chain B, Penicillin Acylase Mutant Impaired In Catalysis With
Penicillin G In The Active Site
Length = 557
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 181 AQYKKWNIKHAASENSTFKEMAPTICSQRVQAAFIVSDSVDWS-RDIQVLCDILRTGGLP 239
A+ + W+ K AS + +M + Q A + +++W D+ + TG P
Sbjct: 138 AKSRAWDGKELASLLAWTHQMKAKNWQEWTQQAAKQALTINWYYADVNGNIGYVHTGAYP 197
Query: 240 GRETGHQPHL 249
R++GH P L
Sbjct: 198 DRQSGHDPRL 207
>pdb|1JX9|B Chain B, Penicillin Acylase, Mutant
pdb|1K5Q|B Chain B, Penicillin Acylase, Mutant Complexed With Paa
pdb|1K5S|B Chain B, Penicillin Acylase, Mutant Complexed With Ppa
Length = 557
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 181 AQYKKWNIKHAASENSTFKEMAPTICSQRVQAAFIVSDSVDWS-RDIQVLCDILRTGGLP 239
A+ + W+ K AS + +M + Q A + +++W D+ + TG P
Sbjct: 138 AKSRAWDGKELASLLAWTHQMKAKNWQEWTQQAAKQALTINWYYADVNGNIGYVHTGAYP 197
Query: 240 GRETGHQPHL 249
R++GH P L
Sbjct: 198 DRQSGHDPRL 207
>pdb|1R9O|A Chain A, Crystal Structure Of P4502c9 With Flurbiprofen Bound
Length = 477
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 26/60 (43%)
Query: 106 SKRATELSKLLGVNILPCQVVQGHSPFKQLFNRFENEFIVAVGKGEPAAVMAEYGFKNVL 165
+K E+ +++G N PC + H P+ +I + P AV + F+N L
Sbjct: 304 AKVQEEIERVIGRNRSPCMQDRSHMPYTDAVVHEVQRYIDLLPTSLPHAVTCDIKFRNYL 363
>pdb|1OG2|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG2|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
Length = 475
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 26/60 (43%)
Query: 106 SKRATELSKLLGVNILPCQVVQGHSPFKQLFNRFENEFIVAVGKGEPAAVMAEYGFKNVL 165
+K E+ +++G N PC + H P+ +I + P AV + F+N L
Sbjct: 302 AKVQEEIERVIGRNRSPCMQDRSHMPYTDAVVHEVQRYIDLLPTSLPHAVTCDIKFRNYL 361
>pdb|1YS9|A Chain A, Crystal Sructure Of Phosphatase Spy1043 From Streptococcus
Pyogenes
Length = 254
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 29/145 (20%), Positives = 58/145 (40%), Gaps = 23/145 (15%)
Query: 57 GIAFDIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLL 116
G D+DG + G I + +KRL + IPY+ +TN + R E+ + +
Sbjct: 5 GYLIDLDGTIYQGKNRIPAGERFIKRLQERG----IPYLLVTN-----NTTRTPEMVQSM 55
Query: 117 GVNILPCQVVQGHSPFKQLF--NRFENEFIVAVGKGEPAAVMAEYGFKNVLSIDEYASYF 174
N + + + ++ +++ + +G+ A V+ E G K+ ++ Y
Sbjct: 56 LANQFHVE-----TSIETIYTATMATVDYMNDMNRGKTAYVIGETGLKSAIAAAGYVEEL 110
Query: 175 D-------GIDPLAQYKKWNIKHAA 192
+ G+D Y+ I A
Sbjct: 111 ENPAYVVVGLDSQVTYEMLAIATLA 135
>pdb|3T4J|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With N- Isopentenyl Adenine
pdb|3T4J|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With N- Isopentenyl Adenine
pdb|3T4K|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With N- Benzyladenine
pdb|3T4K|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With N- Benzyladenine
pdb|3T4L|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Trans- Zeatin
pdb|3T4L|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Trans- Zeatin
pdb|3T4O|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Dihydrozeatin
pdb|3T4O|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Dihydrozeatin
pdb|3T4Q|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Trans- Zeatin Riboside (Hydrolysed)
pdb|3T4Q|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Trans- Zeatin Riboside (Hydrolysed)
pdb|3T4S|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Kinetin
pdb|3T4S|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Kinetin
pdb|3T4T|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Thiadiazuron
pdb|3T4T|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Thiadiazuron
Length = 270
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 133 KQLFNRFENEFIVAVGKGEPAAVMAEYGFKNVLSIDEYASYFDGIDPLA 181
+++F R N I + +GEP+ V EY V+ + SY + +D ++
Sbjct: 87 REMFERQHNWVIKTMDRGEPSPVRDEYA--PVIFSQDSVSYLESLDMMS 133
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,249,122
Number of Sequences: 62578
Number of extensions: 288028
Number of successful extensions: 646
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 633
Number of HSP's gapped (non-prelim): 20
length of query: 269
length of database: 14,973,337
effective HSP length: 97
effective length of query: 172
effective length of database: 8,903,271
effective search space: 1531362612
effective search space used: 1531362612
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)