Query 044580
Match_columns 269
No_of_seqs 241 out of 1349
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 04:42:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044580.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044580hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1618 Predicted phosphatase 100.0 2.2E-58 4.7E-63 421.4 16.4 212 48-268 28-244 (389)
2 TIGR01456 CECR5 HAD-superfamil 100.0 2.5E-35 5.4E-40 274.9 16.3 205 56-268 1-206 (321)
3 COG0647 NagD Predicted sugar p 99.9 2.8E-26 6E-31 209.5 16.5 157 53-263 6-165 (269)
4 PF13344 Hydrolase_6: Haloacid 99.9 1.2E-25 2.5E-30 177.3 11.4 100 58-162 1-101 (101)
5 PLN02645 phosphoglycolate phos 99.9 2.3E-23 4.9E-28 193.6 19.3 171 54-260 27-201 (311)
6 TIGR01452 PGP_euk phosphoglyco 99.9 2.3E-22 5E-27 183.7 19.6 170 55-260 2-173 (279)
7 TIGR01460 HAD-SF-IIA Haloacid 99.9 2.8E-22 6.1E-27 179.3 16.7 159 58-261 1-160 (236)
8 TIGR01457 HAD-SF-IIA-hyp2 HAD- 99.9 4.1E-21 8.9E-26 173.2 17.9 149 55-261 1-151 (249)
9 PRK10444 UMP phosphatase; Prov 99.9 1.4E-20 3.1E-25 170.1 17.7 103 55-163 1-104 (248)
10 KOG2882 p-Nitrophenyl phosphat 99.9 6.7E-21 1.5E-25 174.5 13.4 133 54-191 21-175 (306)
11 TIGR01458 HAD-SF-IIA-hyp3 HAD- 99.7 4.2E-16 9E-21 141.3 13.1 120 56-188 2-127 (257)
12 TIGR01459 HAD-SF-IIA-hyp4 HAD- 99.5 3.8E-13 8.3E-18 120.4 15.9 101 54-160 7-115 (242)
13 KOG3040 Predicted sugar phosph 99.3 1.7E-11 3.6E-16 108.0 9.7 92 53-149 5-96 (262)
14 TIGR01662 HAD-SF-IIIA HAD-supe 98.9 1.2E-08 2.5E-13 82.6 11.2 102 56-164 1-128 (132)
15 TIGR01664 DNA-3'-Pase DNA 3'-p 98.7 1.2E-07 2.5E-12 81.0 10.4 107 52-164 10-159 (166)
16 cd01427 HAD_like Haloacid deha 98.7 3.1E-07 6.8E-12 71.7 10.8 99 57-163 1-136 (139)
17 TIGR01656 Histidinol-ppas hist 98.6 5.8E-07 1.3E-11 74.6 11.2 105 56-165 1-143 (147)
18 TIGR01668 YqeG_hyp_ppase HAD s 98.5 7.4E-07 1.6E-11 76.0 10.6 105 53-164 23-133 (170)
19 TIGR01261 hisB_Nterm histidino 98.4 4E-06 8.6E-11 71.3 11.8 103 56-164 2-144 (161)
20 PRK06769 hypothetical protein; 98.3 1E-05 2.2E-10 69.1 11.8 102 54-164 3-134 (173)
21 TIGR00213 GmhB_yaeD D,D-heptos 98.3 1.3E-05 2.8E-10 68.3 12.0 102 56-163 2-146 (176)
22 PF09419 PGP_phosphatase: Mito 98.2 1.1E-05 2.5E-10 69.3 10.9 102 52-160 38-157 (168)
23 TIGR01681 HAD-SF-IIIC HAD-supe 98.2 5.7E-06 1.2E-10 67.4 8.3 42 56-101 1-55 (128)
24 TIGR01533 lipo_e_P4 5'-nucleot 98.2 9.6E-06 2.1E-10 74.5 10.5 91 53-150 73-197 (266)
25 PRK08942 D,D-heptose 1,7-bisph 98.2 3.6E-05 7.9E-10 65.7 12.4 104 54-164 2-144 (181)
26 TIGR01672 AphA HAD superfamily 98.1 2.1E-05 4.6E-10 71.1 11.0 103 55-164 63-208 (237)
27 TIGR02726 phenyl_P_delta pheny 98.1 8.7E-06 1.9E-10 69.9 7.8 104 53-165 5-123 (169)
28 PRK09484 3-deoxy-D-manno-octul 98.1 1.6E-05 3.5E-10 68.5 9.5 100 54-165 20-137 (183)
29 PRK11009 aphA acid phosphatase 98.1 2.7E-05 5.9E-10 70.4 11.3 105 54-165 62-209 (237)
30 PRK14988 GMP/IMP nucleotidase; 98.1 2.1E-05 4.6E-10 69.7 10.2 85 72-164 94-190 (224)
31 TIGR01670 YrbI-phosphatas 3-de 98.1 2.2E-05 4.8E-10 65.8 9.8 96 56-165 2-117 (154)
32 PRK13288 pyrophosphatase PpaX; 98.1 4E-05 8.6E-10 66.7 11.0 85 72-164 83-179 (214)
33 TIGR01684 viral_ppase viral ph 98.1 1.2E-05 2.6E-10 74.8 7.8 68 54-129 125-196 (301)
34 TIGR02461 osmo_MPG_phos mannos 98.1 8.8E-06 1.9E-10 72.5 6.8 55 57-119 1-55 (225)
35 TIGR01663 PNK-3'Pase polynucle 98.1 2.3E-05 4.9E-10 78.4 10.2 92 53-150 166-293 (526)
36 PHA02530 pseT polynucleotide k 98.0 4.4E-05 9.5E-10 69.9 11.1 105 55-164 158-293 (300)
37 PRK11587 putative phosphatase; 98.0 5.9E-05 1.3E-09 66.1 10.9 85 71-164 83-179 (218)
38 COG2179 Predicted hydrolase of 98.0 3.7E-05 8E-10 66.0 8.9 101 52-164 25-135 (175)
39 PF08645 PNK3P: Polynucleotide 98.0 2.1E-05 4.6E-10 66.8 7.2 106 57-170 2-158 (159)
40 TIGR01486 HAD-SF-IIB-MPGP mann 97.9 3E-05 6.6E-10 69.7 6.5 54 58-119 2-56 (256)
41 PRK00192 mannosyl-3-phosphogly 97.9 3.4E-05 7.4E-10 70.1 6.9 58 54-119 3-61 (273)
42 PRK13225 phosphoglycolate phos 97.8 0.00015 3.2E-09 66.7 10.4 84 73-164 144-236 (273)
43 TIGR01689 EcbF-BcbF capsule bi 97.8 5.8E-05 1.2E-09 62.1 6.8 45 56-104 2-53 (126)
44 PRK13478 phosphonoacetaldehyde 97.8 0.00021 4.5E-09 64.7 11.0 86 72-165 102-201 (267)
45 smart00775 LNS2 LNS2 domain. T 97.8 5E-05 1.1E-09 64.3 6.4 45 57-105 1-57 (157)
46 TIGR01487 SPP-like sucrose-pho 97.8 4.1E-05 9E-10 66.9 5.9 56 56-119 2-58 (215)
47 PRK13226 phosphoglycolate phos 97.8 0.00026 5.6E-09 62.7 11.0 84 73-164 97-192 (229)
48 PRK03669 mannosyl-3-phosphogly 97.8 3.7E-05 7.9E-10 69.9 5.6 60 52-119 4-64 (271)
49 PRK05446 imidazole glycerol-ph 97.8 0.00041 8.9E-09 66.3 12.8 105 55-165 2-146 (354)
50 TIGR01685 MDP-1 magnesium-depe 97.8 0.00022 4.8E-09 61.6 10.0 104 55-165 2-155 (174)
51 PRK01158 phosphoglycolate phos 97.8 3.7E-05 8.1E-10 67.3 5.3 58 54-119 2-60 (230)
52 COG0546 Gph Predicted phosphat 97.8 0.0004 8.6E-09 61.3 11.7 85 72-164 90-186 (220)
53 PHA02597 30.2 hypothetical pro 97.7 0.00031 6.7E-09 60.3 10.3 86 71-165 74-172 (197)
54 PLN02779 haloacid dehalogenase 97.7 0.0005 1.1E-08 63.4 12.2 72 90-165 159-244 (286)
55 TIGR00338 serB phosphoserine p 97.7 0.00049 1.1E-08 59.9 11.5 88 72-167 86-195 (219)
56 PHA03398 viral phosphatase sup 97.7 0.00011 2.4E-09 68.4 7.5 69 53-129 126-198 (303)
57 TIGR02463 MPGP_rel mannosyl-3- 97.7 3.9E-05 8.5E-10 67.1 4.3 54 58-119 2-56 (221)
58 PRK10513 sugar phosphate phosp 97.7 0.00013 2.9E-09 65.6 7.6 58 54-119 2-60 (270)
59 COG1778 Low specificity phosph 97.7 0.00012 2.6E-09 62.3 6.5 101 53-165 6-124 (170)
60 PRK10748 flavin mononucleotide 97.7 0.00035 7.6E-09 62.3 9.9 77 74-164 116-205 (238)
61 PLN02954 phosphoserine phospha 97.6 0.00056 1.2E-08 59.7 10.7 85 72-164 85-193 (224)
62 PRK10530 pyridoxal phosphate ( 97.6 0.00013 2.8E-09 65.4 6.0 58 54-119 2-60 (272)
63 PRK12702 mannosyl-3-phosphogly 97.6 0.00018 4E-09 67.0 7.0 57 55-119 1-58 (302)
64 TIGR01482 SPP-subfamily Sucros 97.5 0.0001 2.2E-09 64.2 4.7 53 58-118 1-54 (225)
65 PRK15126 thiamin pyrimidine py 97.5 0.00022 4.9E-09 64.4 6.8 57 55-119 2-59 (272)
66 TIGR00099 Cof-subfamily Cof su 97.5 0.00011 2.3E-09 65.9 4.5 55 57-119 1-56 (256)
67 TIGR01686 FkbH FkbH-like domai 97.4 0.00072 1.6E-08 63.2 9.1 100 54-161 2-124 (320)
68 PRK10976 putative hydrolase; P 97.4 0.00021 4.5E-09 64.3 5.0 57 55-119 2-59 (266)
69 COG0561 Cof Predicted hydrolas 97.4 0.00025 5.3E-09 63.8 5.4 58 54-119 2-60 (264)
70 PF03767 Acid_phosphat_B: HAD 97.4 0.00057 1.2E-08 61.3 7.3 68 53-126 70-164 (229)
71 PF08282 Hydrolase_3: haloacid 97.3 0.00047 1E-08 59.7 5.8 54 58-119 1-55 (254)
72 PLN02887 hydrolase family prot 97.3 0.00072 1.6E-08 68.5 7.8 59 53-119 306-365 (580)
73 PRK10725 fructose-1-P/6-phosph 97.3 0.00014 3E-09 61.6 2.2 120 54-181 4-149 (188)
74 PF13419 HAD_2: Haloacid dehal 97.2 0.0017 3.7E-08 52.9 8.3 89 68-164 74-174 (176)
75 smart00577 CPDc catalytic doma 97.2 0.0022 4.8E-08 53.3 9.0 56 55-119 2-84 (148)
76 PTZ00174 phosphomannomutase; P 97.2 0.0005 1.1E-08 61.8 5.3 53 53-112 3-56 (247)
77 COG0637 Predicted phosphatase/ 97.1 0.00065 1.4E-08 60.3 5.2 30 153-182 117-150 (221)
78 TIGR01680 Veg_Stor_Prot vegeta 97.1 0.0013 2.9E-08 60.6 7.3 68 54-127 100-195 (275)
79 PRK14502 bifunctional mannosyl 97.1 0.0012 2.5E-08 67.9 7.5 64 48-119 409-473 (694)
80 PRK13582 thrH phosphoserine ph 97.1 0.0061 1.3E-07 52.3 10.9 80 73-161 70-165 (205)
81 TIGR01675 plant-AP plant acid 97.1 0.0015 3.3E-08 58.8 7.2 69 53-127 75-170 (229)
82 PRK11133 serB phosphoserine ph 97.1 0.0037 8.1E-08 58.9 9.9 86 72-165 182-289 (322)
83 COG2503 Predicted secreted aci 97.0 0.0045 9.7E-08 56.3 9.3 90 54-149 78-201 (274)
84 TIGR01484 HAD-SF-IIB HAD-super 97.0 0.001 2.2E-08 57.3 4.7 40 58-101 2-43 (204)
85 TIGR02471 sucr_syn_bact_C sucr 96.9 0.0015 3.3E-08 57.8 5.1 61 57-127 1-61 (236)
86 PLN02423 phosphomannomutase 96.9 0.0015 3.2E-08 58.9 5.1 51 54-112 5-57 (245)
87 TIGR01990 bPGM beta-phosphoglu 96.8 0.0012 2.6E-08 55.5 3.6 60 57-122 1-62 (185)
88 PRK08238 hypothetical protein; 96.7 0.017 3.6E-07 57.5 11.6 86 73-169 74-168 (479)
89 PRK10563 6-phosphogluconate ph 96.6 0.0027 5.8E-08 55.4 4.6 122 54-181 3-149 (221)
90 PF08235 LNS2: LNS2 (Lipin/Ned 96.6 0.019 4.2E-07 48.9 9.2 41 58-102 2-54 (157)
91 COG0241 HisB Histidinol phosph 96.5 0.0052 1.1E-07 53.6 5.9 103 55-164 5-146 (181)
92 TIGR02009 PGMB-YQAB-SF beta-ph 96.5 0.0055 1.2E-07 51.5 5.7 57 55-117 1-59 (185)
93 TIGR02253 CTE7 HAD superfamily 96.5 0.021 4.5E-07 49.5 9.4 88 70-165 93-193 (221)
94 TIGR01485 SPP_plant-cyano sucr 96.5 0.0055 1.2E-07 54.9 5.6 62 57-127 3-68 (249)
95 TIGR01428 HAD_type_II 2-haloal 96.4 0.029 6.3E-07 48.0 9.6 88 69-164 90-189 (198)
96 PF00702 Hydrolase: haloacid d 96.3 0.018 3.9E-07 49.0 7.5 87 64-160 120-215 (215)
97 COG3769 Predicted hydrolase (H 96.3 0.012 2.7E-07 52.9 6.6 59 52-119 4-63 (274)
98 PRK10187 trehalose-6-phosphate 96.2 0.0058 1.3E-07 55.8 4.7 56 55-117 14-75 (266)
99 TIGR01454 AHBA_synth_RP 3-amin 96.2 0.038 8.1E-07 47.6 9.5 88 69-164 73-172 (205)
100 TIGR02252 DREG-2 REG-2-like, H 96.2 0.027 5.9E-07 48.3 8.6 85 71-164 105-202 (203)
101 PRK09449 dUMP phosphatase; Pro 96.2 0.036 7.9E-07 48.2 9.1 86 70-164 94-193 (224)
102 TIGR01509 HAD-SF-IA-v3 haloaci 96.1 0.041 8.9E-07 45.8 8.9 86 70-164 84-181 (183)
103 TIGR03351 PhnX-like phosphonat 96.1 0.049 1.1E-06 47.2 9.4 86 70-163 86-186 (220)
104 PRK10826 2-deoxyglucose-6-phos 96.0 0.064 1.4E-06 46.8 9.8 89 69-165 90-190 (222)
105 TIGR01449 PGP_bact 2-phosphogl 95.9 0.085 1.8E-06 45.3 10.3 87 70-164 84-182 (213)
106 TIGR01491 HAD-SF-IB-PSPlk HAD- 95.9 0.056 1.2E-06 45.8 8.9 91 69-167 78-190 (201)
107 PLN02770 haloacid dehalogenase 95.9 0.082 1.8E-06 47.4 10.3 88 69-164 106-205 (248)
108 PRK13222 phosphoglycolate phos 95.8 0.11 2.4E-06 44.9 10.5 88 69-164 91-190 (226)
109 COG4850 Uncharacterized conser 95.8 0.05 1.1E-06 51.5 8.4 96 54-153 160-289 (373)
110 PLN03243 haloacid dehalogenase 95.5 0.12 2.6E-06 47.1 10.0 87 70-164 108-206 (260)
111 PF12689 Acid_PPase: Acid Phos 95.4 0.15 3.2E-06 43.9 9.8 107 55-168 3-152 (169)
112 TIGR03351 PhnX-like phosphonat 95.4 0.073 1.6E-06 46.2 8.0 22 55-76 1-22 (220)
113 COG1011 Predicted hydrolase (H 95.4 0.12 2.7E-06 44.6 9.2 86 70-164 98-196 (229)
114 TIGR01422 phosphonatase phosph 95.4 0.14 3.1E-06 45.6 9.8 88 69-164 97-198 (253)
115 TIGR02009 PGMB-YQAB-SF beta-ph 95.2 0.13 2.8E-06 43.0 8.6 86 69-164 86-183 (185)
116 TIGR02254 YjjG/YfnB HAD superf 95.2 0.12 2.7E-06 44.5 8.6 86 70-164 96-195 (224)
117 TIGR01990 bPGM beta-phosphoglu 95.2 0.074 1.6E-06 44.5 7.0 85 70-164 86-182 (185)
118 PRK10826 2-deoxyglucose-6-phos 95.0 0.096 2.1E-06 45.7 7.5 24 54-77 6-29 (222)
119 TIGR01422 phosphonatase phosph 95.0 0.024 5.1E-07 50.7 3.6 17 55-71 2-18 (253)
120 TIGR01511 ATPase-IB1_Cu copper 94.9 0.17 3.7E-06 51.1 9.9 95 54-163 384-489 (562)
121 PLN02811 hydrolase 94.9 0.15 3.2E-06 44.6 8.5 90 69-165 76-182 (220)
122 PLN02575 haloacid dehalogenase 94.9 0.17 3.7E-06 48.9 9.4 86 72-165 217-314 (381)
123 PLN02940 riboflavin kinase 94.8 0.016 3.5E-07 55.7 2.2 122 53-181 9-157 (382)
124 PF03031 NIF: NLI interacting 94.7 0.022 4.8E-07 47.3 2.6 53 56-117 1-73 (159)
125 PLN03243 haloacid dehalogenase 94.7 0.079 1.7E-06 48.3 6.4 29 153-181 140-172 (260)
126 PF05116 S6PP: Sucrose-6F-phos 94.7 0.037 8E-07 50.0 4.1 66 55-128 2-67 (247)
127 TIGR02250 FCP1_euk FCP1-like p 94.5 0.13 2.8E-06 43.5 6.8 39 72-119 59-97 (156)
128 PRK06698 bifunctional 5'-methy 94.5 0.3 6.5E-06 47.9 10.2 86 71-164 330-424 (459)
129 PRK13223 phosphoglycolate phos 94.5 0.28 6.1E-06 44.7 9.4 87 70-164 100-198 (272)
130 PRK09456 ?-D-glucose-1-phospha 94.5 0.16 3.5E-06 43.6 7.5 87 71-164 84-182 (199)
131 TIGR02251 HIF-SF_euk Dullard-l 94.5 0.12 2.6E-06 43.7 6.4 55 56-119 2-81 (162)
132 TIGR02247 HAD-1A3-hyp Epoxide 94.4 0.27 5.7E-06 42.4 8.6 89 70-164 93-193 (211)
133 PLN02940 riboflavin kinase 94.3 0.25 5.4E-06 47.6 9.0 90 69-165 91-192 (382)
134 PLN03017 trehalose-phosphatase 94.1 0.075 1.6E-06 51.2 4.9 44 53-101 109-158 (366)
135 TIGR02253 CTE7 HAD superfamily 94.0 0.058 1.3E-06 46.7 3.7 31 55-85 2-33 (221)
136 TIGR01490 HAD-SF-IB-hyp1 HAD-s 93.8 0.46 1E-05 40.5 8.9 91 70-168 86-199 (202)
137 TIGR01512 ATPase-IB2_Cd heavy 93.7 0.26 5.7E-06 49.4 8.3 98 57-164 344-449 (536)
138 TIGR01549 HAD-SF-IA-v1 haloaci 93.7 0.29 6.3E-06 39.8 7.1 83 69-160 62-154 (154)
139 PRK10725 fructose-1-P/6-phosph 93.7 0.51 1.1E-05 39.7 8.8 87 68-164 85-183 (188)
140 TIGR02137 HSK-PSP phosphoserin 93.6 0.82 1.8E-05 40.1 10.3 108 68-186 65-191 (203)
141 TIGR01525 ATPase-IB_hvy heavy 93.6 0.34 7.3E-06 48.8 8.8 97 54-164 363-471 (556)
142 KOG2961 Predicted hydrolase (H 93.6 0.92 2E-05 38.9 9.9 110 54-166 42-166 (190)
143 TIGR00685 T6PP trehalose-phosp 93.4 0.13 2.8E-06 46.1 5.0 43 55-100 3-51 (244)
144 PLN02382 probable sucrose-phos 93.2 0.27 5.9E-06 47.9 7.2 65 54-127 8-76 (413)
145 TIGR01489 DKMTPPase-SF 2,3-dik 93.1 0.56 1.2E-05 39.1 8.2 42 70-119 71-112 (188)
146 TIGR01449 PGP_bact 2-phosphogl 93.1 0.034 7.3E-07 47.8 0.6 16 58-73 1-16 (213)
147 TIGR02252 DREG-2 REG-2-like, H 92.9 0.064 1.4E-06 45.9 2.2 23 56-78 1-23 (203)
148 PRK14501 putative bifunctional 92.8 0.14 3.1E-06 53.2 4.9 45 54-101 491-541 (726)
149 PRK13222 phosphoglycolate phos 92.7 0.07 1.5E-06 46.2 2.0 20 53-72 4-23 (226)
150 PLN02770 haloacid dehalogenase 92.4 0.062 1.3E-06 48.2 1.4 29 153-181 139-171 (248)
151 TIGR02247 HAD-1A3-hyp Epoxide 92.3 0.22 4.8E-06 42.9 4.8 16 55-70 2-17 (211)
152 PRK09456 ?-D-glucose-1-phospha 92.1 0.079 1.7E-06 45.6 1.6 81 101-181 50-148 (199)
153 TIGR01691 enolase-ppase 2,3-di 92.1 0.58 1.3E-05 41.8 7.2 88 70-165 94-194 (220)
154 PLN02575 haloacid dehalogenase 92.1 0.21 4.6E-06 48.3 4.7 29 153-181 247-279 (381)
155 PLN02151 trehalose-phosphatase 92.0 0.23 5.1E-06 47.6 4.8 49 54-110 97-151 (354)
156 TIGR02245 HAD_IIID1 HAD-superf 91.8 0.84 1.8E-05 40.2 7.8 62 52-122 18-87 (195)
157 PRK10563 6-phosphogluconate ph 91.7 1.3 2.8E-05 38.4 8.9 85 69-164 86-183 (221)
158 TIGR02254 YjjG/YfnB HAD superf 91.5 0.098 2.1E-06 45.1 1.6 21 55-75 1-21 (224)
159 TIGR01993 Pyr-5-nucltdase pyri 91.3 1.2 2.7E-05 37.4 8.2 84 70-164 83-182 (184)
160 PLN02919 haloacid dehalogenase 91.3 0.17 3.6E-06 55.0 3.4 24 52-75 72-95 (1057)
161 TIGR01548 HAD-SF-IA-hyp1 haloa 91.0 0.12 2.6E-06 44.3 1.6 16 57-72 2-17 (197)
162 PRK11033 zntA zinc/cadmium/mer 90.7 1.4 3.1E-05 46.0 9.5 98 55-164 548-652 (741)
163 COG4087 Soluble P-type ATPase 90.2 1.7 3.7E-05 36.4 7.6 97 56-163 15-116 (152)
164 PRK09552 mtnX 2-hydroxy-3-keto 90.2 2 4.3E-05 37.5 8.7 29 69-101 72-100 (219)
165 PLN02919 haloacid dehalogenase 90.1 1.9 4.1E-05 47.0 10.1 86 71-164 161-259 (1057)
166 COG2217 ZntA Cation transport 90.1 0.91 2E-05 47.4 7.4 87 57-157 519-616 (713)
167 PRK09449 dUMP phosphatase; Pro 89.9 0.22 4.7E-06 43.3 2.3 27 154-180 126-156 (224)
168 TIGR01493 HAD-SF-IA-v2 Haloaci 89.9 0.11 2.4E-06 43.3 0.5 21 57-77 1-21 (175)
169 PRK13223 phosphoglycolate phos 89.9 0.15 3.3E-06 46.5 1.4 23 54-76 12-34 (272)
170 COG0560 SerB Phosphoserine pho 89.8 3.4 7.4E-05 36.6 9.8 91 70-168 76-188 (212)
171 TIGR01548 HAD-SF-IA-hyp1 haloa 89.6 1.9 4.2E-05 36.8 8.0 72 71-150 106-187 (197)
172 TIGR01993 Pyr-5-nucltdase pyri 89.4 0.2 4.4E-06 42.3 1.7 21 56-76 1-21 (184)
173 TIGR01497 kdpB K+-transporting 88.9 2.6 5.7E-05 43.8 9.6 92 62-165 437-533 (675)
174 TIGR01428 HAD_type_II 2-haloal 88.9 0.15 3.3E-06 43.5 0.6 16 56-71 2-17 (198)
175 PLN02205 alpha,alpha-trehalose 88.8 0.6 1.3E-05 49.7 5.0 53 54-112 595-651 (854)
176 TIGR01544 HAD-SF-IE haloacid d 88.6 2.4 5.2E-05 39.4 8.3 42 69-118 119-160 (277)
177 TIGR01549 HAD-SF-IA-v1 haloaci 88.5 0.15 3.2E-06 41.6 0.2 20 57-76 1-20 (154)
178 PF06437 ISN1: IMP-specific 5' 88.2 1.9 4E-05 41.9 7.4 55 54-113 146-204 (408)
179 COG0637 Predicted phosphatase/ 88.1 3.2 6.9E-05 36.7 8.5 90 68-165 83-184 (221)
180 TIGR01509 HAD-SF-IA-v3 haloaci 88.0 0.21 4.5E-06 41.4 0.8 16 57-72 1-16 (183)
181 PRK06698 bifunctional 5'-methy 87.8 0.21 4.5E-06 49.0 0.8 31 53-83 239-270 (459)
182 TIGR02137 HSK-PSP phosphoserin 87.7 0.94 2E-05 39.7 4.8 96 56-165 2-110 (203)
183 PRK10671 copA copper exporting 87.7 3.3 7.1E-05 43.9 9.7 98 55-164 630-736 (834)
184 PLN02580 trehalose-phosphatase 87.6 1.2 2.5E-05 43.3 5.8 51 54-112 118-174 (384)
185 PF00702 Hydrolase: haloacid d 87.5 0.35 7.7E-06 41.0 2.0 30 56-85 2-33 (215)
186 cd06259 YdcF-like YdcF-like. Y 87.1 9.4 0.0002 31.0 10.2 94 63-162 1-120 (150)
187 PRK14010 potassium-transportin 86.8 3.7 8.1E-05 42.7 9.2 86 63-160 433-523 (673)
188 TIGR01522 ATPase-IIA2_Ca golgi 86.4 3.8 8.1E-05 43.8 9.3 93 64-164 521-641 (884)
189 TIGR01491 HAD-SF-IB-PSPlk HAD- 86.3 0.43 9.3E-06 40.3 1.8 19 54-72 3-21 (201)
190 COG1011 Predicted hydrolase (H 86.1 0.57 1.2E-05 40.4 2.5 38 143-180 116-160 (229)
191 PRK01122 potassium-transportin 86.1 2.9 6.3E-05 43.5 8.0 87 62-160 436-527 (679)
192 KOG2914 Predicted haloacid-hal 85.3 0.55 1.2E-05 42.2 2.1 67 54-126 9-77 (222)
193 PF13419 HAD_2: Haloacid dehal 85.2 0.23 5E-06 40.2 -0.4 20 58-77 1-20 (176)
194 PLN03063 alpha,alpha-trehalose 85.1 1.8 3.9E-05 45.8 6.1 53 54-112 506-567 (797)
195 TIGR01454 AHBA_synth_RP 3-amin 85.0 0.28 6E-06 42.2 0.0 21 58-78 1-21 (205)
196 PRK10494 hypothetical protein; 84.9 11 0.00024 34.5 10.4 89 77-171 110-212 (259)
197 PRK11590 hypothetical protein; 84.5 0.53 1.2E-05 41.1 1.6 17 54-70 5-21 (211)
198 COG1877 OtsB Trehalose-6-phosp 84.4 3.2 6.9E-05 38.4 6.7 50 54-109 17-72 (266)
199 TIGR03333 salvage_mtnX 2-hydro 84.4 5.2 0.00011 34.8 7.8 29 69-101 68-96 (214)
200 PTZ00445 p36-lilke protein; Pr 84.4 1.2 2.5E-05 40.1 3.7 45 52-100 40-100 (219)
201 KOG3107 Predicted haloacid deh 83.8 5.3 0.00012 38.9 8.0 85 94-180 373-466 (468)
202 KOG2914 Predicted haloacid-hal 83.0 7.2 0.00016 35.1 8.2 98 67-168 88-197 (222)
203 PF06941 NT5C: 5' nucleotidase 82.6 2.7 5.8E-05 36.0 5.2 48 66-117 68-119 (191)
204 PF06189 5-nucleotidase: 5'-nu 81.0 4.1 8.8E-05 37.6 5.9 73 55-129 121-222 (264)
205 PF05152 DUF705: Protein of un 79.8 6.9 0.00015 36.7 7.1 66 54-127 121-190 (297)
206 TIGR01658 EYA-cons_domain eyes 79.4 8.3 0.00018 35.5 7.3 83 95-179 179-271 (274)
207 COG0560 SerB Phosphoserine pho 78.8 2.6 5.7E-05 37.3 3.9 29 138-166 91-121 (212)
208 KOG0207 Cation transport ATPas 78.2 10 0.00023 40.6 8.5 90 51-150 699-794 (951)
209 PF00532 Peripla_BP_1: Peripla 77.7 4.2 9.2E-05 37.0 5.1 66 62-149 57-127 (279)
210 TIGR01490 HAD-SF-IB-hyp1 HAD-s 77.6 0.98 2.1E-05 38.4 0.8 14 58-71 2-15 (202)
211 PLN03064 alpha,alpha-trehalose 77.5 4.4 9.4E-05 43.7 5.7 53 54-112 590-657 (934)
212 TIGR01489 DKMTPPase-SF 2,3-dik 77.4 1.3 2.9E-05 36.8 1.6 16 56-71 2-17 (188)
213 KOG1615 Phosphoserine phosphat 77.3 13 0.00029 33.2 7.7 75 69-151 86-183 (227)
214 TIGR01517 ATPase-IIB_Ca plasma 76.4 13 0.00028 40.1 9.0 48 64-119 572-619 (941)
215 KOG2134 Polynucleotide kinase 76.1 4.7 0.0001 39.3 5.0 65 52-120 72-157 (422)
216 PRK15122 magnesium-transportin 75.7 14 0.0003 39.7 9.0 48 64-119 543-590 (903)
217 KOG3189 Phosphomannomutase [Li 75.0 6.7 0.00014 35.2 5.3 56 53-120 9-65 (252)
218 TIGR01524 ATPase-IIIB_Mg magne 74.6 20 0.00043 38.4 9.7 48 64-119 508-555 (867)
219 PF02358 Trehalose_PPase: Treh 74.5 2.6 5.6E-05 37.3 2.7 43 59-107 1-49 (235)
220 PRK11590 hypothetical protein; 74.3 40 0.00087 29.2 10.2 40 71-118 95-135 (211)
221 TIGR01116 ATPase-IIA1_Ca sarco 73.3 22 0.00047 38.3 9.7 48 64-119 530-577 (917)
222 PF13433 Peripla_BP_5: Peripla 72.1 13 0.00029 35.8 7.0 108 57-164 4-166 (363)
223 PF12710 HAD: haloacid dehalog 71.7 1.9 4.2E-05 35.9 1.1 13 58-70 1-13 (192)
224 TIGR00035 asp_race aspartate r 71.2 39 0.00084 29.9 9.5 83 70-165 58-147 (229)
225 TIGR01488 HAD-SF-IB Haloacid D 71.1 1.9 4.1E-05 35.6 0.9 14 58-71 2-15 (177)
226 PRK01018 50S ribosomal protein 69.4 44 0.00095 26.0 8.3 49 68-120 13-61 (99)
227 TIGR01488 HAD-SF-IB Haloacid D 69.3 9.5 0.00021 31.4 4.8 44 68-119 70-113 (177)
228 TIGR02417 fruct_sucro_rep D-fr 69.3 8.5 0.00018 35.0 4.9 25 209-238 238-262 (327)
229 KOG2116 Protein involved in pl 68.9 26 0.00056 36.5 8.5 69 54-127 529-612 (738)
230 PRK14987 gluconate operon tran 68.8 8.5 0.00018 35.1 4.8 21 128-149 168-188 (331)
231 PRK11303 DNA-binding transcrip 68.6 10 0.00022 34.3 5.3 23 208-235 237-259 (328)
232 TIGR01647 ATPase-IIIA_H plasma 68.0 22 0.00047 37.4 8.2 48 64-119 435-482 (755)
233 PRK10014 DNA-binding transcrip 67.8 29 0.00062 31.6 8.1 13 208-220 242-254 (342)
234 cd06317 PBP1_ABC_sugar_binding 67.8 17 0.00036 31.7 6.3 33 61-98 56-88 (275)
235 TIGR01545 YfhB_g-proteo haloac 67.0 2.8 6.1E-05 36.9 1.2 20 54-73 4-23 (210)
236 COG1609 PurR Transcriptional r 66.7 25 0.00054 32.9 7.6 10 210-219 238-247 (333)
237 cd00431 cysteine_hydrolases Cy 66.6 41 0.00088 27.4 8.1 103 58-165 3-140 (161)
238 PRK10517 magnesium-transportin 65.7 23 0.00051 38.1 8.0 48 64-119 543-590 (902)
239 cd06311 PBP1_ABC_sugar_binding 65.4 19 0.0004 31.6 6.2 74 61-148 60-134 (274)
240 COG4996 Predicted phosphatase 65.4 21 0.00045 30.1 5.9 56 56-119 1-81 (164)
241 cd06321 PBP1_ABC_sugar_binding 65.2 17 0.00037 31.7 5.8 87 61-164 57-145 (271)
242 PTZ00106 60S ribosomal protein 64.0 39 0.00085 26.9 7.2 53 64-120 18-70 (108)
243 PLN02177 glycerol-3-phosphate 64.0 6.9 0.00015 39.3 3.4 21 54-74 21-41 (497)
244 PF02698 DUF218: DUF218 domain 63.7 33 0.00071 27.9 7.0 86 73-164 23-125 (155)
245 TIGR01459 HAD-SF-IIA-hyp4 HAD- 62.9 14 0.00029 32.8 4.8 83 72-164 139-238 (242)
246 TIGR01494 ATPase_P-type ATPase 62.2 39 0.00085 33.4 8.4 86 62-160 338-426 (499)
247 PF06888 Put_Phosphatase: Puta 61.9 56 0.0012 29.6 8.6 15 57-71 2-16 (234)
248 PRK13602 putative ribosomal pr 60.6 16 0.00035 27.5 4.2 49 67-119 7-55 (82)
249 PF03709 OKR_DC_1_N: Orn/Lys/A 60.2 15 0.00033 29.1 4.2 41 53-101 37-77 (115)
250 cd03466 Nitrogenase_NifN_2 Nit 58.7 30 0.00066 33.7 6.8 85 76-164 234-327 (429)
251 PF04312 DUF460: Protein of un 58.6 38 0.00081 28.4 6.3 58 56-119 43-102 (138)
252 PRK09552 mtnX 2-hydroxy-3-keto 58.3 5.1 0.00011 34.9 1.3 19 55-73 3-21 (219)
253 cd01575 PBP1_GntR Ligand-bindi 58.2 64 0.0014 27.7 8.2 32 60-98 54-85 (268)
254 cd06289 PBP1_MalI_like Ligand- 57.1 82 0.0018 27.0 8.7 33 61-99 55-87 (268)
255 COG5083 SMP2 Uncharacterized p 56.7 40 0.00086 33.7 7.0 70 54-128 374-458 (580)
256 PF12710 HAD: haloacid dehalog 56.6 17 0.00037 30.1 4.2 38 74-119 92-129 (192)
257 cd01966 Nitrogenase_NifN_1 Nit 56.5 28 0.00061 33.9 6.2 85 77-165 235-328 (417)
258 TIGR01523 ATPase-IID_K-Na pota 56.5 47 0.001 36.5 8.4 48 64-119 639-686 (1053)
259 cd01968 Nitrogenase_NifE_I Nit 56.2 24 0.00052 34.0 5.6 88 76-166 217-316 (410)
260 PRK02842 light-independent pro 55.5 20 0.00043 35.0 4.9 84 78-165 224-319 (427)
261 PRK00994 F420-dependent methyl 55.5 1.2E+02 0.0027 27.9 9.5 111 64-179 6-130 (277)
262 TIGR01545 YfhB_g-proteo haloac 55.5 24 0.00051 31.0 5.0 40 71-118 94-134 (210)
263 cd01574 PBP1_LacI Ligand-bindi 55.3 19 0.00041 31.1 4.4 24 209-237 174-197 (264)
264 KOG3109 Haloacid dehalogenase- 55.2 14 0.0003 33.6 3.4 25 52-76 12-36 (244)
265 TIGR01284 alt_nitrog_alph nitr 54.5 30 0.00064 34.2 6.0 87 76-165 258-354 (457)
266 COG0566 SpoU rRNA methylases [ 54.5 14 0.00031 33.8 3.5 96 58-164 131-230 (260)
267 cd00316 Oxidoreductase_nitroge 54.4 43 0.00093 31.6 6.9 86 76-164 212-306 (399)
268 cd01977 Nitrogenase_VFe_alpha 54.4 31 0.00067 33.4 6.0 87 76-165 221-317 (415)
269 TIGR02109 PQQ_syn_pqqE coenzym 53.5 36 0.00078 32.0 6.2 49 64-118 56-106 (358)
270 PF09547 Spore_IV_A: Stage IV 53.2 27 0.00059 34.8 5.3 67 52-122 143-214 (492)
271 PRK05301 pyrroloquinoline quin 52.9 33 0.00072 32.5 5.9 50 64-119 65-116 (378)
272 cd06312 PBP1_ABC_sugar_binding 52.7 18 0.00039 31.7 3.8 35 61-100 57-91 (271)
273 PF06189 5-nucleotidase: 5'-nu 52.6 60 0.0013 30.1 7.2 70 90-163 35-105 (264)
274 TIGR02468 sucrsPsyn_pln sucros 52.3 38 0.00082 37.2 6.7 64 56-127 773-837 (1050)
275 PF00148 Oxidored_nitro: Nitro 51.9 12 0.00026 35.6 2.7 84 79-165 207-299 (398)
276 TIGR01862 N2-ase-Ialpha nitrog 51.0 31 0.00067 33.9 5.5 87 76-165 250-346 (443)
277 KOG1324 Dihydrofolate reductas 50.7 20 0.00042 31.5 3.5 64 123-187 86-161 (190)
278 COG2216 KdpB High-affinity K+ 50.7 38 0.00083 34.6 6.0 77 62-150 438-518 (681)
279 cd01965 Nitrogenase_MoFe_beta_ 50.6 38 0.00083 32.8 6.1 85 76-164 233-326 (428)
280 cd01967 Nitrogenase_MoFe_alpha 50.2 29 0.00064 33.2 5.1 88 75-165 218-314 (406)
281 PLN02499 glycerol-3-phosphate 49.8 12 0.00025 37.7 2.3 21 54-74 7-27 (498)
282 cd06308 PBP1_sensor_kinase_lik 49.7 1.1E+02 0.0025 26.5 8.5 34 61-99 56-89 (270)
283 cd01976 Nitrogenase_MoFe_alpha 49.4 29 0.00063 33.8 5.0 86 78-166 233-329 (421)
284 KOG3085 Predicted hydrolase (H 48.4 20 0.00043 32.7 3.4 29 53-81 5-33 (237)
285 TIGR03278 methan_mark_10 putat 48.0 38 0.00081 33.2 5.5 54 61-119 73-130 (404)
286 cd01012 YcaC_related YcaC rela 47.9 89 0.0019 25.7 7.1 89 73-171 22-123 (157)
287 cd01391 Periplasmic_Binding_Pr 47.8 89 0.0019 25.9 7.2 35 61-101 58-92 (269)
288 PF06941 NT5C: 5' nucleotidase 47.8 8.6 0.00019 32.9 0.9 13 58-70 5-17 (191)
289 PF12500 TRSP: TRSP domain C t 47.8 64 0.0014 27.5 6.2 29 135-163 51-86 (155)
290 TIGR01285 nifN nitrogenase mol 46.3 45 0.00098 32.7 5.8 85 76-165 245-339 (432)
291 PRK10834 vancomycin high tempe 45.9 1.6E+02 0.0035 26.8 8.9 82 77-164 71-165 (239)
292 TIGR02244 HAD-IG-Ncltidse HAD 45.7 24 0.00053 33.8 3.7 26 72-101 185-210 (343)
293 cd06298 PBP1_CcpA_like Ligand- 45.5 30 0.00065 29.9 4.1 68 62-149 56-124 (268)
294 PRK03972 ribosomal biogenesis 45.4 60 0.0013 29.0 5.9 56 91-150 104-160 (208)
295 KOG1251 Serine racemase [Signa 45.3 83 0.0018 29.4 6.8 59 95-153 122-187 (323)
296 COG3700 AphA Acid phosphatase 45.2 92 0.002 27.7 6.8 110 53-163 61-207 (237)
297 PRK10727 DNA-binding transcrip 44.9 1.1E+02 0.0024 27.9 7.9 12 208-219 236-247 (343)
298 COG1794 RacX Aspartate racemas 43.8 2.1E+02 0.0046 26.0 9.1 86 71-169 59-150 (230)
299 cd06301 PBP1_rhizopine_binding 43.5 34 0.00073 29.7 4.1 75 61-149 56-131 (272)
300 PRK14476 nitrogenase molybdenu 43.4 54 0.0012 32.4 5.9 85 76-165 245-339 (455)
301 cd01536 PBP1_ABC_sugar_binding 43.3 39 0.00085 28.8 4.4 35 61-100 55-89 (267)
302 TIGR01279 DPOR_bchN light-inde 43.1 48 0.001 32.1 5.4 83 78-165 211-302 (407)
303 PRK10703 DNA-binding transcrip 42.8 1.2E+02 0.0026 27.5 7.8 25 208-237 238-262 (341)
304 KOG3085 Predicted hydrolase (H 42.7 75 0.0016 28.9 6.2 95 59-164 103-210 (237)
305 TIGR02260 benz_CoA_red_B benzo 42.7 48 0.001 32.4 5.3 50 60-112 349-406 (413)
306 PRK09189 uroporphyrinogen-III 42.4 83 0.0018 27.7 6.4 89 62-163 49-144 (240)
307 PRK02910 light-independent pro 42.1 56 0.0012 32.8 5.9 86 77-165 222-322 (519)
308 PF06506 PrpR_N: Propionate ca 42.0 38 0.00081 28.7 4.0 87 74-165 61-148 (176)
309 PF09949 DUF2183: Uncharacteri 41.7 52 0.0011 25.8 4.4 24 130-153 53-76 (100)
310 PRK10200 putative racemase; Pr 40.6 2.5E+02 0.0054 24.9 9.3 86 69-166 57-149 (230)
311 PF11019 DUF2608: Protein of u 39.9 58 0.0013 29.6 5.1 39 78-121 88-126 (252)
312 PF14597 Lactamase_B_5: Metall 39.7 26 0.00056 31.0 2.6 53 60-119 21-80 (199)
313 TIGR03677 rpl7ae 50S ribosomal 39.5 1.9E+02 0.0041 23.1 7.5 51 65-119 20-71 (117)
314 COG5663 Uncharacterized conser 39.5 19 0.00042 31.4 1.8 29 57-85 8-36 (194)
315 PRK04175 rpl7ae 50S ribosomal 39.5 1.9E+02 0.0042 23.3 7.6 53 64-120 23-76 (122)
316 PF01740 STAS: STAS domain; I 38.9 44 0.00096 25.7 3.7 65 53-127 46-112 (117)
317 cd00540 AAG Alkyladenine DNA g 38.9 17 0.00036 31.7 1.3 44 63-120 88-131 (179)
318 cd01979 Pchlide_reductase_N Pc 38.7 82 0.0018 30.3 6.2 85 76-166 211-305 (396)
319 cd01974 Nitrogenase_MoFe_beta 38.2 93 0.002 30.4 6.6 85 76-165 237-331 (435)
320 PRK14478 nitrogenase molybdenu 38.2 70 0.0015 31.8 5.8 86 77-165 251-352 (475)
321 PRK09526 lacI lac repressor; R 38.0 1.2E+02 0.0025 27.5 6.9 25 208-237 239-263 (342)
322 TIGR02495 NrdG2 anaerobic ribo 37.8 83 0.0018 26.5 5.5 48 62-117 63-112 (191)
323 COG1879 RbsB ABC-type sugar tr 37.6 73 0.0016 29.0 5.5 78 74-164 103-183 (322)
324 cd06595 GH31_xylosidase_XylS-l 37.3 1.8E+02 0.0038 26.8 8.0 63 53-120 39-118 (292)
325 TIGR03365 Bsubt_queE 7-cyano-7 37.3 40 0.00087 30.2 3.6 39 62-104 73-113 (238)
326 PRK11145 pflA pyruvate formate 37.1 68 0.0015 28.3 5.1 47 62-112 71-120 (246)
327 COG1419 FlhF Flagellar GTP-bin 36.7 42 0.0009 33.0 3.8 43 59-105 337-379 (407)
328 KOG3349 Predicted glycosyltran 36.6 41 0.00089 28.9 3.3 35 74-113 88-124 (170)
329 PRK10401 DNA-binding transcrip 36.5 1.6E+02 0.0035 26.8 7.6 12 208-219 236-247 (346)
330 cd01014 nicotinamidase_related 36.4 1.7E+02 0.0036 24.0 7.0 85 72-165 24-129 (155)
331 cd01972 Nitrogenase_VnfE_like 35.9 76 0.0017 30.8 5.6 85 77-164 226-321 (426)
332 TIGR03333 salvage_mtnX 2-hydro 35.6 17 0.00037 31.5 0.9 14 58-71 2-15 (214)
333 COG3882 FkbH Predicted enzyme 35.5 57 0.0012 33.0 4.5 20 51-70 218-237 (574)
334 COG1180 PflA Pyruvate-formate 35.5 66 0.0014 29.3 4.8 53 55-113 76-132 (260)
335 TIGR01452 PGP_euk phosphoglyco 35.5 3.3E+02 0.0073 24.5 10.5 96 55-164 132-244 (279)
336 PRK07475 hypothetical protein; 35.4 2.2E+02 0.0048 25.5 8.2 82 69-162 60-146 (245)
337 TIGR01861 ANFD nitrogenase iro 35.3 1.3E+02 0.0028 30.4 7.2 85 79-166 264-358 (513)
338 PRK05583 ribosomal protein L7A 34.8 91 0.002 24.5 4.9 50 67-120 13-62 (104)
339 COG0474 MgtA Cation transport 34.0 1.6E+02 0.0036 31.8 8.1 53 68-128 544-598 (917)
340 PF01993 MTD: methylene-5,6,7, 33.9 1E+02 0.0022 28.5 5.5 103 75-179 13-129 (276)
341 cd01537 PBP1_Repressors_Sugar_ 33.8 81 0.0017 26.6 4.9 35 61-101 55-89 (264)
342 cd05014 SIS_Kpsf KpsF-like pro 33.8 44 0.00094 26.1 2.9 34 72-109 59-92 (128)
343 PRK06186 hypothetical protein; 33.5 36 0.00079 30.8 2.7 36 59-98 51-89 (229)
344 cd06292 PBP1_LacI_like_10 Liga 33.4 60 0.0013 28.2 4.1 35 62-100 56-92 (273)
345 PRK06683 hypothetical protein; 33.3 80 0.0017 23.8 4.1 50 67-120 7-56 (82)
346 cd01981 Pchlide_reductase_B Pc 33.2 1.1E+02 0.0025 29.5 6.3 86 77-165 226-330 (430)
347 cd06299 PBP1_LacI_like_13 Liga 33.2 61 0.0013 27.9 4.0 33 61-100 55-87 (265)
348 PF12694 MoCo_carrier: Putativ 32.9 90 0.0019 26.4 4.7 35 59-97 61-96 (145)
349 TIGR01282 nifD nitrogenase mol 32.6 70 0.0015 31.7 4.8 85 79-166 269-364 (466)
350 PRK04531 acetylglutamate kinas 32.2 1.4E+02 0.0029 29.2 6.6 89 2-120 2-90 (398)
351 TIGR01458 HAD-SF-IIA-hyp3 HAD- 32.2 3.7E+02 0.008 24.0 9.3 87 72-165 121-222 (257)
352 TIGR01860 VNFD nitrogenase van 32.1 82 0.0018 31.2 5.1 85 78-165 262-356 (461)
353 TIGR03164 UHCUDC OHCU decarbox 31.8 79 0.0017 26.7 4.3 43 74-118 90-133 (157)
354 PRK13601 putative L7Ae-like ri 31.7 99 0.0021 23.4 4.4 46 71-120 8-53 (82)
355 cd06591 GH31_xylosidase_XylS X 31.6 1.3E+02 0.0028 28.0 6.2 61 53-118 38-105 (319)
356 TIGR03180 UraD_2 OHCU decarbox 31.4 82 0.0018 26.7 4.4 43 74-118 90-133 (158)
357 COG3977 Alanine-alpha-ketoisov 31.3 75 0.0016 30.5 4.4 81 63-143 30-121 (417)
358 PF06385 Baculo_LEF-11: Baculo 31.1 91 0.002 24.4 4.2 58 57-119 19-76 (94)
359 KOG0733 Nuclear AAA ATPase (VC 31.1 80 0.0017 33.1 4.9 95 63-163 224-354 (802)
360 CHL00076 chlB photochlorophyll 31.1 98 0.0021 31.1 5.6 87 77-166 227-335 (513)
361 COG0731 Fe-S oxidoreductases [ 30.9 1.2E+02 0.0026 28.6 5.7 57 54-128 79-136 (296)
362 COG2710 NifD Nitrogenase molyb 30.7 1.7E+02 0.0038 28.9 7.1 87 77-166 245-342 (456)
363 cd06267 PBP1_LacI_sugar_bindin 30.6 80 0.0017 26.7 4.3 33 61-100 55-87 (264)
364 KOG1387 Glycosyltransferase [C 30.4 1.1E+02 0.0024 29.9 5.4 54 69-127 59-112 (465)
365 PRK05928 hemD uroporphyrinogen 30.3 76 0.0016 27.4 4.2 44 123-167 54-106 (249)
366 cd06578 HemD Uroporphyrinogen- 30.1 1.4E+02 0.0031 25.3 5.8 95 61-164 49-149 (239)
367 COG1923 Hfq Uncharacterized ho 30.1 54 0.0012 24.8 2.6 20 78-101 10-30 (77)
368 COG4502 5'(3')-deoxyribonucleo 30.0 1.8E+02 0.0038 25.0 6.0 42 55-101 50-93 (180)
369 PRK12723 flagellar biosynthesi 30.0 1E+02 0.0022 29.9 5.3 41 61-105 313-353 (388)
370 cd06303 PBP1_LuxPQ_Quorum_Sens 29.8 59 0.0013 28.7 3.4 27 208-239 189-215 (280)
371 PRK13798 putative OHCU decarbo 29.6 92 0.002 26.6 4.4 43 74-118 95-138 (166)
372 cd06578 HemD Uroporphyrinogen- 29.5 3.1E+02 0.0068 23.1 7.9 84 74-166 8-102 (239)
373 cd06598 GH31_transferase_CtsZ 29.4 1.6E+02 0.0035 27.4 6.4 61 53-118 38-109 (317)
374 TIGR01278 DPOR_BchB light-inde 29.3 1E+02 0.0022 30.9 5.3 86 77-165 222-324 (511)
375 cd06295 PBP1_CelR Ligand bindi 28.9 45 0.00098 29.1 2.5 85 61-164 64-150 (275)
376 PF06874 FBPase_2: Firmicute f 28.8 62 0.0013 33.6 3.7 60 106-166 508-574 (640)
377 cd03028 GRX_PICOT_like Glutare 28.7 2.5E+02 0.0053 20.9 6.4 48 91-138 7-58 (90)
378 cd06283 PBP1_RegR_EndR_KdgR_li 28.5 86 0.0019 26.9 4.2 33 60-99 54-86 (267)
379 TIGR02193 heptsyl_trn_I lipopo 28.4 2.3E+02 0.0051 25.7 7.3 79 75-164 199-277 (319)
380 PRK13946 shikimate kinase; Pro 28.1 1.9E+02 0.004 24.4 6.1 35 91-125 9-44 (184)
381 PF06888 Put_Phosphatase: Puta 27.9 4.3E+02 0.0093 23.8 8.6 55 67-127 67-121 (234)
382 PRK07283 hypothetical protein; 27.8 1.3E+02 0.0027 23.3 4.6 50 67-120 14-63 (98)
383 PF00455 DeoRC: DeoR C termina 27.7 1.6E+02 0.0035 24.6 5.6 60 76-149 10-70 (161)
384 KOG2967 Uncharacterized conser 27.3 1.2E+02 0.0027 28.7 5.2 53 53-105 96-149 (314)
385 cd05008 SIS_GlmS_GlmD_1 SIS (S 26.8 73 0.0016 24.7 3.1 29 73-105 59-87 (126)
386 PF09506 Salt_tol_Pase: Glucos 26.8 1E+02 0.0022 29.8 4.4 38 57-101 4-47 (381)
387 PRK07714 hypothetical protein; 26.7 3E+02 0.0064 21.2 8.1 50 67-120 14-63 (100)
388 PF00025 Arf: ADP-ribosylation 26.7 62 0.0013 27.0 2.8 61 55-118 82-142 (175)
389 TIGR02399 salt_tol_Pase glucos 26.6 99 0.0021 30.0 4.4 41 54-101 7-53 (389)
390 TIGR02886 spore_II_AA anti-sig 26.5 2.3E+02 0.0049 21.2 5.8 56 54-119 38-93 (106)
391 TIGR02329 propionate_PrpR prop 26.5 2.1E+02 0.0045 29.0 7.0 80 77-164 87-167 (526)
392 COG1568 Predicted methyltransf 26.3 2.7E+02 0.0058 26.6 7.0 56 61-123 36-91 (354)
393 PF13394 Fer4_14: 4Fe-4S singl 26.2 33 0.00072 26.5 1.0 40 63-106 49-95 (119)
394 PRK10916 ADP-heptose:LPS hepto 26.2 2.6E+02 0.0057 25.9 7.3 80 77-164 203-284 (348)
395 KOG1257 NADP+-dependent malic 26.0 98 0.0021 31.6 4.4 18 54-71 344-361 (582)
396 TIGR01481 ccpA catabolite cont 25.8 88 0.0019 28.2 3.9 23 210-237 237-259 (329)
397 cd01980 Chlide_reductase_Y Chl 25.8 1.9E+02 0.004 28.1 6.3 84 77-165 216-308 (416)
398 COG1587 HemD Uroporphyrinogen- 25.7 3.7E+02 0.008 23.9 7.8 87 74-170 11-107 (248)
399 TIGR00377 ant_ant_sig anti-ant 25.6 1.6E+02 0.0034 22.0 4.7 56 54-119 42-97 (108)
400 PF13353 Fer4_12: 4Fe-4S singl 25.6 70 0.0015 25.2 2.8 40 63-105 54-98 (139)
401 PF02254 TrkA_N: TrkA-N domain 25.5 3E+02 0.0064 20.8 8.1 33 76-118 10-42 (116)
402 PF15608 PELOTA_1: PELOTA RNA 25.4 1.6E+02 0.0034 23.3 4.7 47 70-121 38-84 (100)
403 PRK06731 flhF flagellar biosyn 25.4 65 0.0014 29.7 2.9 42 60-105 211-252 (270)
404 cd06290 PBP1_LacI_like_9 Ligan 25.4 98 0.0021 26.7 4.0 25 208-237 175-199 (265)
405 cd06270 PBP1_GalS_like Ligand 25.4 96 0.0021 26.8 3.9 25 208-237 176-200 (268)
406 COG0771 MurD UDP-N-acetylmuram 25.1 4.7E+02 0.01 26.1 9.0 74 13-103 282-355 (448)
407 PRK00802 3-methyladenine DNA g 25.0 39 0.00085 29.7 1.3 45 63-120 93-137 (188)
408 cd06305 PBP1_methylthioribose_ 25.0 1.3E+02 0.0027 26.0 4.6 72 61-148 55-127 (273)
409 COG1086 Predicted nucleoside-d 24.9 4.1E+02 0.0089 27.5 8.6 89 68-167 232-332 (588)
410 cd06274 PBP1_FruR Ligand bindi 24.6 98 0.0021 26.7 3.8 31 62-99 56-86 (264)
411 TIGR02836 spore_IV_A stage IV 24.4 2.3E+02 0.005 28.5 6.6 63 53-119 144-211 (492)
412 cd06273 PBP1_GntR_like_1 This 24.3 1.1E+02 0.0023 26.4 4.0 32 61-99 55-86 (268)
413 TIGR01657 P-ATPase-V P-type AT 24.2 1.2E+02 0.0026 33.3 5.1 47 64-118 649-695 (1054)
414 TIGR00640 acid_CoA_mut_C methy 24.1 3.9E+02 0.0085 21.7 7.7 69 94-167 31-112 (132)
415 PRK02261 methylaspartate mutas 23.9 4E+02 0.0087 21.7 9.5 71 90-167 30-119 (137)
416 TIGR02494 PFLE_PFLC glycyl-rad 23.9 1.6E+02 0.0036 26.6 5.3 44 61-109 125-171 (295)
417 COG1927 Mtd Coenzyme F420-depe 23.8 4.1E+02 0.0089 24.2 7.5 105 74-180 13-131 (277)
418 KOG1503 Phosphoribosylpyrophos 23.6 82 0.0018 29.2 3.1 55 93-150 8-64 (354)
419 cd05710 SIS_1 A subgroup of th 23.3 1.1E+02 0.0023 24.1 3.5 28 73-104 60-87 (120)
420 TIGR02931 anfK_nitrog Fe-only 23.3 2E+02 0.0043 28.5 6.1 84 77-164 246-339 (461)
421 cd08184 Fe-ADH3 Iron-containin 23.1 2.6E+02 0.0057 26.5 6.7 68 91-160 25-101 (347)
422 TIGR02383 Hfq RNA chaperone Hf 22.8 99 0.0021 22.3 2.8 20 78-101 6-26 (61)
423 PF01380 SIS: SIS domain SIS d 22.7 1.3E+02 0.0028 23.1 3.8 40 54-104 54-93 (131)
424 TIGR00567 3mg DNA-3-methyladen 22.7 51 0.0011 29.1 1.6 42 64-120 95-138 (192)
425 TIGR01283 nifE nitrogenase mol 22.6 1.6E+02 0.0035 28.9 5.3 86 77-165 257-354 (456)
426 PLN02446 (5-phosphoribosyl)-5- 22.5 2.8E+02 0.006 25.7 6.4 68 57-144 60-137 (262)
427 COG1366 SpoIIAA Anti-anti-sigm 22.5 2.6E+02 0.0055 21.7 5.5 56 54-119 43-98 (117)
428 PRK10076 pyruvate formate lyas 22.4 1.1E+02 0.0025 27.0 3.8 38 61-102 38-78 (213)
429 cd06294 PBP1_ycjW_transcriptio 22.2 1.3E+02 0.0029 25.7 4.2 69 62-149 61-130 (270)
430 TIGR01508 rib_reduct_arch 2,5- 22.0 3.4E+02 0.0073 23.6 6.7 87 55-160 68-156 (210)
431 TIGR03641 cas1_HMARI CRISPR-as 22.0 98 0.0021 29.1 3.5 37 59-101 31-67 (322)
432 cd01541 PBP1_AraR Ligand-bindi 21.9 1.5E+02 0.0032 25.7 4.5 35 60-98 54-90 (273)
433 PF05728 UPF0227: Uncharacteri 21.9 2.7E+02 0.0058 24.1 6.0 42 134-182 51-96 (187)
434 TIGR03638 cas1_ECOLI CRISPR-as 21.8 1E+02 0.0022 28.2 3.5 35 61-101 44-78 (269)
435 cd01543 PBP1_XylR Ligand-bindi 21.6 1.3E+02 0.0029 26.0 4.1 68 61-150 50-118 (265)
436 cd05006 SIS_GmhA Phosphoheptos 21.4 1.3E+02 0.0029 25.1 3.9 28 73-104 114-141 (177)
437 cd00578 L-fuc_L-ara-isomerases 21.4 4.6E+02 0.0099 25.6 8.2 103 61-172 63-201 (452)
438 cd06277 PBP1_LacI_like_1 Ligan 21.3 1.5E+02 0.0032 25.7 4.3 31 61-99 58-88 (268)
439 TIGR00287 cas1 CRISPR-associat 21.2 1.1E+02 0.0023 28.7 3.5 37 59-101 32-68 (323)
440 cd06309 PBP1_YtfQ_like Peripla 21.2 1.9E+02 0.0041 25.1 5.0 92 61-164 55-149 (273)
441 cd07041 STAS_RsbR_RsbS_like Su 21.2 2.5E+02 0.0054 21.1 5.1 56 54-119 40-95 (109)
442 TIGR02884 spore_pdaA delta-lac 21.1 2.1E+02 0.0046 25.1 5.3 29 210-238 186-215 (224)
443 TIGR03127 RuMP_HxlB 6-phospho 21.0 1.6E+02 0.0034 24.6 4.3 29 73-105 85-113 (179)
444 PRK05839 hypothetical protein; 20.8 3.4E+02 0.0073 25.4 6.9 63 103-165 64-135 (374)
445 cd01448 TST_Repeat_1 Thiosulfa 20.7 3.6E+02 0.0077 20.6 6.0 47 72-119 60-106 (122)
446 PF01248 Ribosomal_L7Ae: Ribos 20.7 1.7E+02 0.0037 21.8 4.0 48 68-119 12-60 (95)
447 TIGR03640 cas1_DVULG CRISPR-as 20.6 1.1E+02 0.0023 29.0 3.4 37 59-101 36-72 (340)
448 TIGR02764 spore_ybaN_pdaB poly 20.5 5.1E+02 0.011 21.7 8.0 28 211-238 152-182 (191)
449 PRK10669 putative cation:proto 20.5 3.8E+02 0.0082 26.9 7.5 97 62-170 417-538 (558)
450 COG0614 FepB ABC-type Fe3+-hyd 20.4 1.9E+02 0.0042 25.8 5.0 86 77-166 127-228 (319)
451 TIGR03639 cas1_NMENI CRISPR-as 20.4 1E+02 0.0022 28.4 3.2 37 59-101 32-69 (278)
452 cd01716 Hfq Hfq, an abundant, 20.4 1.1E+02 0.0024 22.0 2.7 20 78-101 2-22 (61)
453 PRK00395 hfq RNA-binding prote 20.3 1.1E+02 0.0024 23.2 2.8 20 78-101 10-30 (79)
454 TIGR03470 HpnH hopanoid biosyn 20.3 2.6E+02 0.0056 26.1 5.9 61 54-119 123-193 (318)
455 PF10881 DUF2726: Protein of u 20.3 4.2E+02 0.0092 20.8 6.5 24 90-113 100-123 (126)
456 PF00322 Endothelin: Endotheli 20.1 11 0.00024 23.5 -2.2 13 249-261 17-29 (31)
457 PF03948 Ribosomal_L9_C: Ribos 20.1 74 0.0016 24.1 1.8 29 101-129 30-58 (87)
458 TIGR02195 heptsyl_trn_II lipop 20.1 3.9E+02 0.0084 24.4 7.0 78 75-164 195-274 (334)
No 1
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=100.00 E-value=2.2e-58 Score=421.40 Aligned_cols=212 Identities=42% Similarity=0.714 Sum_probs=191.9
Q ss_pred cccCCCCccEEEEecCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEc
Q 044580 48 SSQSQRPSFGIAFDIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQ 127 (269)
Q Consensus 48 ~~~~~~~~~a~lFDIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~ 127 (269)
...+..+.++|+|||||||++|+++||||.+|+++|.++.++++|||+||||+||.+|..++++||+.||++++++||++
T Consensus 28 s~~ss~~~fgfafDIDGVL~RG~~~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg~~E~~rA~~lS~~Lgv~Vs~dqviq 107 (389)
T KOG1618|consen 28 SFESSPPTFGFAFDIDGVLFRGHRPIPGALKALRRLVDNQGQLKIPFVFLTNGGGILESSRAQELSALLGVEVSADQVIQ 107 (389)
T ss_pred CCCCCCCceeEEEecccEEEecCCCCcchHHHHHHHHhcCCCeeccEEEEeCCCCcchhhHHHHHHHhhCCccCHHHHHh
Confidence 44667789999999999999999999999999999999778899999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhcCCCeEEEEcCchhHHHHhhcCceEecCccccccccccCCCCcchhhhhhhhhccccccccccCCCCCC
Q 044580 128 GHSPFKQLFNRFENEFIVAVGKGEPAAVMAEYGFKNVLSIDEYASYFDGIDPLAQYKKWNIKHAASENSTFKEMAPTICS 207 (269)
Q Consensus 128 s~tp~~~L~~~~~~k~VlvvG~~~~~~v~~~~Gf~~v~t~~d~~~~~p~ldp~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 207 (269)
||+|++.|. +++.|+|+|+|+++.+++|+.|||++|+|.+|+..++|.+||+..|++..+..+. .+.+.-.
T Consensus 108 SHsP~r~l~-~~~~k~vLv~G~~~vr~vAegyGFk~Vvt~D~l~k~f~~ldP~t~~~~~~k~~~~--------~R~~~~~ 178 (389)
T KOG1618|consen 108 SHSPFRLLV-EYHYKRVLVVGQGSVREVAEGYGFKNVVTVDELAKYFPLLDPFTDLSRELKTTKL--------ARDRELF 178 (389)
T ss_pred hcChHHHHh-hhhhceEEEecCCcHHHHhhccCccceeeHHHHHHhCCCcccccchhHhhhcccc--------hhccccc
Confidence 999999886 7889999999999999999999999999999999999999999988764421111 1111246
Q ss_pred CCccEEEEecCCccchhhHHHHHHHHHhCCCCCCCC---C--CCCceEEEcCCcccccccCCCCCC
Q 044580 208 QRVQAAFIVSDSVDWSRDIQVLCDILRTGGLPGRET---G--HQPHLYFANDDLEYQVLLKLGYFP 268 (269)
Q Consensus 208 ~~i~AI~v~~Dp~dW~~diQii~DlL~s~G~~g~~~---~--~~~pi~~sn~Dl~w~~~~~l~~~~ 268 (269)
.+|+|||+++||.+|++|||+|||+|+|||.+||.+ + +++||||||.||+|+++|++|||+
T Consensus 179 r~ieAv~~~~dPv~W~~dlQli~D~l~snG~~gt~~~a~~~~Phipiy~sN~DLlW~~e~~lpR~G 244 (389)
T KOG1618|consen 179 RRIEAVLLLGDPVRWETDLQLIMDVLLSNGSPGTGRLATGPYPHIPIYASNMDLLWMAEYKLPRFG 244 (389)
T ss_pred cceeEEEEecCchhhhhhHHHHHHHHhcCCCCCcccccCCCCCCCceEEecccccccccCCCcccc
Confidence 899999999999999999999999999999999984 3 456999999999999999999997
No 2
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=100.00 E-value=2.5e-35 Score=274.91 Aligned_cols=205 Identities=45% Similarity=0.848 Sum_probs=172.4
Q ss_pred cEEEEecCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcchHHHHHH
Q 044580 56 FGIAFDIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGHSPFKQL 135 (269)
Q Consensus 56 ~a~lFDIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~tp~~~L 135 (269)
++|+||||||||+|+.++|||.||++.|+.+.++.|+|++|+|||+++++++++++|++.+|+++++++|+++++++.++
T Consensus 1 ~~~ifD~DGvL~~g~~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~~~~~~~i~~s~~~~~~l 80 (321)
T TIGR01456 1 FGFAFDIDGVLFRGKKPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGVDVSPLQVIQSHSPYKSL 80 (321)
T ss_pred CEEEEeCcCceECCccccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCCCCCHHHHHhhhHHHHHH
Confidence 58999999999999999999999999999833445999999999999999999999978999999999999999888888
Q ss_pred HHhcCCCeEEEEcCchhHHHHhhcCceEecCccccccccccCCCCcchhhhhhhhhccccccccccCCCCCCCCccEEEE
Q 044580 136 FNRFENEFIVAVGKGEPAAVMAEYGFKNVLSIDEYASYFDGIDPLAQYKKWNIKHAASENSTFKEMAPTICSQRVQAAFI 215 (269)
Q Consensus 136 ~~~~~~k~VlvvG~~~~~~v~~~~Gf~~v~t~~d~~~~~p~ldp~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~AI~v 215 (269)
.++++ ++++++|+++.+++++.+||+.+++.+|+...+|.++|+..+....... .....++....+++||++
T Consensus 81 l~~~~-~~v~viG~~~~~~~l~~~G~~~vv~~~~~~~~~p~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~aVvv 152 (321)
T TIGR01456 81 VNKYE-KRILAVGTGSVRGVAEGYGFQNVVHQDEIVRYFRDIDPFSGMSDEQVRE-------YSRDIPDLTTKRFDAVLV 152 (321)
T ss_pred HHHcC-CceEEEeChHHHHHHHHcCCcccccHHHHHhcCCCCCcccccCHHHhhc-------ccccccccCCCceeEEEE
Confidence 87764 4799999999999999999999999999999999988876654422110 001111233468999999
Q ss_pred ecCCccchhhHHHHHHHHHhCCCCCCCC-CCCCceEEEcCCcccccccCCCCCC
Q 044580 216 VSDSVDWSRDIQVLCDILRTGGLPGRET-GHQPHLYFANDDLEYQVLLKLGYFP 268 (269)
Q Consensus 216 ~~Dp~dW~~diQii~DlL~s~G~~g~~~-~~~~pi~~sn~Dl~w~~~~~l~~~~ 268 (269)
..||.+|+.++|+++++|+++|.+|... .+.+|+|++|+|++|++++.+||++
T Consensus 153 ~~d~~~~~~~l~~~~~~l~~~g~~g~~~~~~~~~~i~~n~D~~~p~~~g~~~~g 206 (321)
T TIGR01456 153 FNDPVDWAADIQIISDALNSEGLPGEKSGKPSIPIYFSNQDLLWANEYKLNRFG 206 (321)
T ss_pred ecCchHHhhhHHHHHHHHhCCCCcCCCCCCCCCCEEEeCCCEeeccCCCCceec
Confidence 9999999999999999999988777533 2457999999999999999887764
No 3
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=99.94 E-value=2.8e-26 Score=209.50 Aligned_cols=157 Identities=27% Similarity=0.327 Sum_probs=127.1
Q ss_pred CCccEEEEecCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcchHHH
Q 044580 53 RPSFGIAFDIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGHSPF 132 (269)
Q Consensus 53 ~~~~a~lFDIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~tp~ 132 (269)
..+++|+||+|||||+|+++||||.++|+.|++ .|+|++|||||++++++.++++|++.+|+++.+++|+||+.+.
T Consensus 6 ~~y~~~l~DlDGvl~~G~~~ipga~e~l~~L~~----~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~~~~~i~TS~~at 81 (269)
T COG0647 6 DKYDGFLFDLDGVLYRGNEAIPGAAEALKRLKA----AGKPVIFLTNNSTRSREVVAARLSSLGGVDVTPDDIVTSGDAT 81 (269)
T ss_pred hhcCEEEEcCcCceEeCCccCchHHHHHHHHHH----cCCeEEEEeCCCCCCHHHHHHHHHhhcCCCCCHHHeecHHHHH
Confidence 368999999999999999999999999999999 4999999999999999999999975588889999999998555
Q ss_pred H-HHHHhcCCCeEEEEcCchhHHHHhhcCceEecCccc--cccccccCCCCcchhhhhhhhhccccccccccCCCCCCCC
Q 044580 133 K-QLFNRFENEFIVAVGKGEPAAVMAEYGFKNVLSIDE--YASYFDGIDPLAQYKKWNIKHAASENSTFKEMAPTICSQR 209 (269)
Q Consensus 133 ~-~L~~~~~~k~VlvvG~~~~~~v~~~~Gf~~v~t~~d--~~~~~p~ldp~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (269)
. ++.++++.++||++|.+++.+.++.+||..+...++ +..+.-++|+..+|++
T Consensus 82 ~~~l~~~~~~~kv~viG~~~l~~~l~~~G~~~~~~~~~~~~d~Vv~g~d~~~~~e~------------------------ 137 (269)
T COG0647 82 ADYLAKQKPGKKVYVIGEEGLKEELEGAGFELVDEEEPARVDAVVVGLDRTLTYEK------------------------ 137 (269)
T ss_pred HHHHHhhCCCCEEEEECCcchHHHHHhCCcEEeccCCCCcccEEEEecCCCCCHHH------------------------
Confidence 5 555556779999999999999999999998865444 3344444555444443
Q ss_pred ccEEEEecCCccchhhHHHHHHHHHhCCCCCCCCCCCCceEEEcCCcccccccC
Q 044580 210 VQAAFIVSDSVDWSRDIQVLCDILRTGGLPGRETGHQPHLYFANDDLEYQVLLK 263 (269)
Q Consensus 210 i~AI~v~~Dp~dW~~diQii~DlL~s~G~~g~~~~~~~pi~~sn~Dl~w~~~~~ 263 (269)
++..+-.+.. | .|++++|||++|+++..
T Consensus 138 ----------------l~~a~~~i~~-g---------~~fI~tNpD~~~p~~~g 165 (269)
T COG0647 138 ----------------LAEALLAIAA-G---------APFIATNPDLTVPTERG 165 (269)
T ss_pred ----------------HHHHHHHHHc-C---------CcEEEeCCCccccCCCC
Confidence 3333333432 2 68999999999998876
No 4
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=99.93 E-value=1.2e-25 Score=177.34 Aligned_cols=100 Identities=28% Similarity=0.424 Sum_probs=87.0
Q ss_pred EEEecCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcch-HHHHHHH
Q 044580 58 IAFDIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGH-SPFKQLF 136 (269)
Q Consensus 58 ~lFDIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~-tp~~~L~ 136 (269)
|+||+|||||+|+.++|||.|+|+.|++ .|+|++|+|||+++++++++++| +.+|+++++++|++|+ ....+|.
T Consensus 1 ~l~D~dGvl~~g~~~ipga~e~l~~L~~----~g~~~~~lTNns~~s~~~~~~~L-~~~Gi~~~~~~i~ts~~~~~~~l~ 75 (101)
T PF13344_consen 1 FLFDLDGVLYNGNEPIPGAVEALDALRE----RGKPVVFLTNNSSRSREEYAKKL-KKLGIPVDEDEIITSGMAAAEYLK 75 (101)
T ss_dssp EEEESTTTSEETTEE-TTHHHHHHHHHH----TTSEEEEEES-SSS-HHHHHHHH-HHTTTT--GGGEEEHHHHHHHHHH
T ss_pred CEEeCccEeEeCCCcCcCHHHHHHHHHH----cCCCEEEEeCCCCCCHHHHHHHH-HhcCcCCCcCEEEChHHHHHHHHH
Confidence 7999999999999999999999999999 49999999999999999999999 5899999999999987 4555666
Q ss_pred HhcCCCeEEEEcCchhHHHHhhcCce
Q 044580 137 NRFENEFIVAVGKGEPAAVMAEYGFK 162 (269)
Q Consensus 137 ~~~~~k~VlvvG~~~~~~v~~~~Gf~ 162 (269)
+++.+++||++|+++++++++++||+
T Consensus 76 ~~~~~~~v~vlG~~~l~~~l~~~G~e 101 (101)
T PF13344_consen 76 EHKGGKKVYVLGSDGLREELREAGFE 101 (101)
T ss_dssp HHTTSSEEEEES-HHHHHHHHHTTEE
T ss_pred hcCCCCEEEEEcCHHHHHHHHHcCCC
Confidence 66889999999999999999999986
No 5
>PLN02645 phosphoglycolate phosphatase
Probab=99.91 E-value=2.3e-23 Score=193.61 Aligned_cols=171 Identities=18% Similarity=0.211 Sum_probs=138.0
Q ss_pred CccEEEEecCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcchHHHH
Q 044580 54 PSFGIAFDIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGHSPFK 133 (269)
Q Consensus 54 ~~~a~lFDIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~tp~~ 133 (269)
.+++|+||+|||||+|+.++|||.++|++|++ .|++++|+||++.++.++++++| +.+|+++.+++|++|+.++.
T Consensus 27 ~~~~~~~D~DGtl~~~~~~~~ga~e~l~~lr~----~g~~~~~~TN~~~~~~~~~~~~l-~~lGi~~~~~~I~ts~~~~~ 101 (311)
T PLN02645 27 SVETFIFDCDGVIWKGDKLIEGVPETLDMLRS----MGKKLVFVTNNSTKSRAQYGKKF-ESLGLNVTEEEIFSSSFAAA 101 (311)
T ss_pred hCCEEEEeCcCCeEeCCccCcCHHHHHHHHHH----CCCEEEEEeCCCCCCHHHHHHHH-HHCCCCCChhhEeehHHHHH
Confidence 58999999999999999999999999999998 49999999999999999999999 58999999999999986665
Q ss_pred HHHHh--c-CCCeEEEEcCchhHHHHhhcCceEecCccccccccccCCCCcchhhhhhhhhccccccccccCCCCCCCCc
Q 044580 134 QLFNR--F-ENEFIVAVGKGEPAAVMAEYGFKNVLSIDEYASYFDGIDPLAQYKKWNIKHAASENSTFKEMAPTICSQRV 210 (269)
Q Consensus 134 ~L~~~--~-~~k~VlvvG~~~~~~v~~~~Gf~~v~t~~d~~~~~p~ldp~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i 210 (269)
.+.+. + ++++||++|+.++.+.++++||+.+...+|.... ..+.. ... ......+
T Consensus 102 ~~l~~~~~~~~~~V~viG~~~~~~~l~~~Gi~~~~g~~~~~~~-------~~~~~-----------~~~----~~~~~~i 159 (311)
T PLN02645 102 AYLKSINFPKDKKVYVIGEEGILEELELAGFQYLGGPEDGDKK-------IELKP-----------GFL----MEHDKDV 159 (311)
T ss_pred HHHHhhccCCCCEEEEEcCHHHHHHHHHCCCEEecCccccccc-------ccccc-----------ccc----cccCCCC
Confidence 55443 2 3568999999999999999999987654442111 00000 000 0123568
Q ss_pred cEEEEecCCccchhhHHHHHHHHHh-CCCCCCCCCCCCceEEEcCCccccc
Q 044580 211 QAAFIVSDSVDWSRDIQVLCDILRT-GGLPGRETGHQPHLYFANDDLEYQV 260 (269)
Q Consensus 211 ~AI~v~~Dp~dW~~diQii~DlL~s-~G~~g~~~~~~~pi~~sn~Dl~w~~ 260 (269)
+||+|-.|+..|...+++.+++|+. +| .+++++|+|..|..
T Consensus 160 ~aVvvg~d~~~~~~~l~~a~~~l~~~~g---------~~~i~tn~d~~~~~ 201 (311)
T PLN02645 160 GAVVVGFDRYINYYKIQYATLCIRENPG---------CLFIATNRDAVTHL 201 (311)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHhcCCC---------CEEEEeCCCCCCCC
Confidence 9999999999999999999999986 34 46889999998754
No 6
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=99.90 E-value=2.3e-22 Score=183.74 Aligned_cols=170 Identities=21% Similarity=0.185 Sum_probs=137.4
Q ss_pred ccEEEEecCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcchHHH-H
Q 044580 55 SFGIAFDIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGHSPF-K 133 (269)
Q Consensus 55 ~~a~lFDIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~tp~-~ 133 (269)
+++|+||||||||+++.++|||.++|+.|++ .|++++|+|||+.+++.++.++| +.+|+++.+++|++|+.++ .
T Consensus 2 ~~~~~~D~DGtl~~~~~~~~ga~e~l~~L~~----~g~~~~~~Tnns~~~~~~~~~~l-~~~G~~~~~~~i~ts~~~~~~ 76 (279)
T TIGR01452 2 AQGFIFDCDGVLWLGERVVPGAPELLDRLAR----AGKAALFVTNNSTKSRAEYALKF-ARLGFNGLAEQLFSSALCAAR 76 (279)
T ss_pred ccEEEEeCCCceEcCCeeCcCHHHHHHHHHH----CCCeEEEEeCCCCCCHHHHHHHH-HHcCCCCChhhEecHHHHHHH
Confidence 6799999999999999999999999999998 49999999999999999999999 5899999999999988554 5
Q ss_pred HHHHh-cCCCeEEEEcCchhHHHHhhcCceEecCccccccccccCCCCcchhhhhhhhhccccccccccCCCCCCCCccE
Q 044580 134 QLFNR-FENEFIVAVGKGEPAAVMAEYGFKNVLSIDEYASYFDGIDPLAQYKKWNIKHAASENSTFKEMAPTICSQRVQA 212 (269)
Q Consensus 134 ~L~~~-~~~k~VlvvG~~~~~~v~~~~Gf~~v~t~~d~~~~~p~ldp~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~A 212 (269)
+|.+. +.+++||++|+++.+++++++|++.+.+.+|..... +.... ........++|
T Consensus 77 ~l~~~~~~~~~v~~iG~~~~~~~l~~~g~~~~~~~~~~~~~~----~~~~~------------------~~~~~~~~~~~ 134 (279)
T TIGR01452 77 LLRQPPDAPKAVYVIGEEGLRAELDAAGIRLAGDPSAGDGAA----PRGSG------------------AFMKLEENVGA 134 (279)
T ss_pred HHHhhCcCCCEEEEEcCHHHHHHHHHCCCEEecCcccccccc----hhhcc------------------cccccCCCCCE
Confidence 55552 456789999999999999999999887766642111 00000 00012346899
Q ss_pred EEEecCCccchhhHHHHHHHHHhCCCCCCCCCCCCceEEEcCCccccc
Q 044580 213 AFIVSDSVDWSRDIQVLCDILRTGGLPGRETGHQPHLYFANDDLEYQV 260 (269)
Q Consensus 213 I~v~~Dp~dW~~diQii~DlL~s~G~~g~~~~~~~pi~~sn~Dl~w~~ 260 (269)
|++-.|+..|...++-.++.|..+|. ..+++|+|..++.
T Consensus 135 Vvv~~d~~~~y~~i~~~l~~L~~~g~---------~~i~Tn~d~~~~~ 173 (279)
T TIGR01452 135 VVVGYDEHFSYAKLREACAHLREPGC---------LFVATNRDPWHPL 173 (279)
T ss_pred EEEecCCCCCHHHHHHHHHHHhcCCC---------EEEEeCCCCCCCC
Confidence 99999999999999999999987553 3677788887763
No 7
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=99.89 E-value=2.8e-22 Score=179.33 Aligned_cols=159 Identities=36% Similarity=0.510 Sum_probs=127.2
Q ss_pred EEEecCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcchHH-HHHHH
Q 044580 58 IAFDIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGHSP-FKQLF 136 (269)
Q Consensus 58 ~lFDIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~tp-~~~L~ 136 (269)
|+||+||||+++..++|+|.++++.|++ .|+|++|+|||+++++++++++|.+.+|+++++++|++|+.+ ..+|.
T Consensus 1 ~lfD~DGvL~~~~~~~~~a~e~i~~l~~----~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~~~~~~iits~~~~~~~l~ 76 (236)
T TIGR01460 1 FLFDIDGVLWLGHKPIPGAAEALNRLRA----KGKPVVFLTNNSSRSEEDYAEKLSSLLGVDVSPDQIITSGSVTKDLLR 76 (236)
T ss_pred CEEeCcCccCcCCccCcCHHHHHHHHHH----CCCeEEEEECCCCCCHHHHHHHHHHhcCCCCCHHHeeeHHHHHHHHHH
Confidence 6899999999999999999999999998 499999999999999999999997548999999999998854 55565
Q ss_pred HhcCCCeEEEEcCchhHHHHhhcCceEecCccccccccccCCCCcchhhhhhhhhccccccccccCCCCCCCCccEEEEe
Q 044580 137 NRFENEFIVAVGKGEPAAVMAEYGFKNVLSIDEYASYFDGIDPLAQYKKWNIKHAASENSTFKEMAPTICSQRVQAAFIV 216 (269)
Q Consensus 137 ~~~~~k~VlvvG~~~~~~v~~~~Gf~~v~t~~d~~~~~p~ldp~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~AI~v~ 216 (269)
+++++++||++|+++++++++.+|++. ++. +..++ ....++.+++++
T Consensus 77 ~~~~~~~v~v~G~~~~~~~l~~~g~~~-----~~~---~~~~~-------------------------~~~~~~~~~vv~ 123 (236)
T TIGR01460 77 QRFEGEKVYVIGVGELRESLEGLGFRN-----DFF---DDIDH-------------------------LAIEKIPAAVIV 123 (236)
T ss_pred HhCCCCEEEEECCHHHHHHHHHcCCcC-----ccc---Ccccc-------------------------cccCCCCeEEEE
Confidence 566677899999999999999999764 100 00000 012356678888
Q ss_pred cCCccchhhHHHHHHHHHhCCCCCCCCCCCCceEEEcCCcccccc
Q 044580 217 SDSVDWSRDIQVLCDILRTGGLPGRETGHQPHLYFANDDLEYQVL 261 (269)
Q Consensus 217 ~Dp~dW~~diQii~DlL~s~G~~g~~~~~~~pi~~sn~Dl~w~~~ 261 (269)
+++.+|..+.+...+.+..+|. .|+|++|+|-+|...
T Consensus 124 ~~~~~~~~~~~~~a~~~l~~~~--------~~~i~tN~d~~~~~~ 160 (236)
T TIGR01460 124 GEPSDFSYDELAKAAYLLAEGD--------VPFIAANRDDLVRLG 160 (236)
T ss_pred CCCCCcCHHHHHHHHHHHhCCC--------CeEEEECCCCCCCCC
Confidence 9999999988887777666331 589999988766653
No 8
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=99.87 E-value=4.1e-21 Score=173.20 Aligned_cols=149 Identities=17% Similarity=0.215 Sum_probs=119.5
Q ss_pred ccEEEEecCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcch-HHHH
Q 044580 55 SFGIAFDIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGH-SPFK 133 (269)
Q Consensus 55 ~~a~lFDIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~-tp~~ 133 (269)
+++|+||+|||||+|+.++|+|.++|++|++ .|++|+|+|||++++.++.+++| +.+|+++.+++|++|+ ....
T Consensus 1 ~~~~~~D~DGtl~~~~~~i~~a~~~l~~l~~----~g~~~~~~Tnn~~r~~~~~~~~l-~~~g~~~~~~~iit~~~~~~~ 75 (249)
T TIGR01457 1 YKGYLIDLDGTMYKGKERIPEAETFVHELQK----RDIPYLFVTNNSTRTPESVAEML-ASFDIPATLETVFTASMATAD 75 (249)
T ss_pred CCEEEEeCCCceEcCCeeCcCHHHHHHHHHH----CCCeEEEEeCCCCCCHHHHHHHH-HHcCCCCChhhEeeHHHHHHH
Confidence 4689999999999999999999999999998 49999999999999999999999 5899999999999977 5556
Q ss_pred HHHHhcCCCeEEEEcCchhHHHHhhcCceEecCccccccccccCCCCcchhhhhhhhhccccccccccCCCCCCCCccEE
Q 044580 134 QLFNRFENEFIVAVGKGEPAAVMAEYGFKNVLSIDEYASYFDGIDPLAQYKKWNIKHAASENSTFKEMAPTICSQRVQAA 213 (269)
Q Consensus 134 ~L~~~~~~k~VlvvG~~~~~~v~~~~Gf~~v~t~~d~~~~~p~ldp~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~AI 213 (269)
+|.++...++++++|+.++++.++.+||+.. . ...++|
T Consensus 76 ~l~~~~~~~~v~~lg~~~l~~~l~~~g~~~~--~----------------------------------------~~~~~V 113 (249)
T TIGR01457 76 YMNDLKLEKTVYVIGEEGLKEAIKEAGYVED--K----------------------------------------EKPDYV 113 (249)
T ss_pred HHHhcCCCCEEEEEcChhHHHHHHHcCCEec--C----------------------------------------CCCCEE
Confidence 6766656788999999999999999998531 0 013567
Q ss_pred EEecCCc-cchhhHHHHHHHHHhCCCCCCCCCCCCceEEEcCCcccccc
Q 044580 214 FIVSDSV-DWSRDIQVLCDILRTGGLPGRETGHQPHLYFANDDLEYQVL 261 (269)
Q Consensus 214 ~v~~Dp~-dW~~diQii~DlL~s~G~~g~~~~~~~pi~~sn~Dl~w~~~ 261 (269)
++-.|.. +|... ...+-.|.. ..+++++|+|+.|+..
T Consensus 114 vvg~~~~~~y~~l-~~a~~~l~~----------g~~~i~tN~D~~~~~~ 151 (249)
T TIGR01457 114 VVGLDRQIDYEKF-ATATLAIRK----------GAHFIGTNGDLAIPTE 151 (249)
T ss_pred EEeCCCCCCHHHH-HHHHHHHHC----------CCeEEEECCCCCCCCC
Confidence 7655533 44444 334444432 3569999999999865
No 9
>PRK10444 UMP phosphatase; Provisional
Probab=99.86 E-value=1.4e-20 Score=170.10 Aligned_cols=103 Identities=22% Similarity=0.299 Sum_probs=92.2
Q ss_pred ccEEEEecCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcchHH-HH
Q 044580 55 SFGIAFDIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGHSP-FK 133 (269)
Q Consensus 55 ~~a~lFDIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~tp-~~ 133 (269)
.++|+||+|||||+++.++|||.++++.|++ .|+|++|+||++.++.++++++| +.+|+++++++|++|+.+ ..
T Consensus 1 ~~~v~~DlDGtL~~~~~~~p~a~~~l~~L~~----~g~~~~~~Tn~~~~~~~~~~~~l-~~~G~~~~~~~i~ts~~~~~~ 75 (248)
T PRK10444 1 IKNVICDIDGVLMHDNVAVPGAAEFLHRILD----KGLPLVLLTNYPSQTGQDLANRF-ATAGVDVPDSVFYTSAMATAD 75 (248)
T ss_pred CcEEEEeCCCceEeCCeeCccHHHHHHHHHH----CCCeEEEEeCCCCCCHHHHHHHH-HHcCCCCCHhhEecHHHHHHH
Confidence 3689999999999999999999999999998 49999999999999999999999 589999999999998754 55
Q ss_pred HHHHhcCCCeEEEEcCchhHHHHhhcCceE
Q 044580 134 QLFNRFENEFIVAVGKGEPAAVMAEYGFKN 163 (269)
Q Consensus 134 ~L~~~~~~k~VlvvG~~~~~~v~~~~Gf~~ 163 (269)
+|. ++++++||++|+.+..+.++.+|++.
T Consensus 76 ~L~-~~~~~~v~~~g~~~l~~~l~~~g~~~ 104 (248)
T PRK10444 76 FLR-RQEGKKAYVIGEGALIHELYKAGFTI 104 (248)
T ss_pred HHH-hCCCCEEEEEcCHHHHHHHHHCcCEe
Confidence 554 44667899999999999999999874
No 10
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=99.85 E-value=6.7e-21 Score=174.51 Aligned_cols=133 Identities=24% Similarity=0.256 Sum_probs=117.4
Q ss_pred CccEEEEecCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCC-CCCCcEEc-chHH
Q 044580 54 PSFGIAFDIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVN-ILPCQVVQ-GHSP 131 (269)
Q Consensus 54 ~~~a~lFDIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~-i~~~qVi~-s~tp 131 (269)
.++.|+||+|||||.|+.+|||+.|+++.|++ .|+.++|+|||+++|++++.+++ +.+|+. +.+++|+. ++++
T Consensus 21 ~~DtfifDcDGVlW~g~~~ipGs~e~l~~L~~----~gK~i~fvTNNStksr~~y~kK~-~~lG~~~v~e~~i~ssa~~~ 95 (306)
T KOG2882|consen 21 SFDTFIFDCDGVLWLGEKPIPGSPEALNLLKS----LGKQIIFVTNNSTKSREQYMKKF-AKLGFNSVKEENIFSSAYAI 95 (306)
T ss_pred hcCEEEEcCCcceeecCCCCCChHHHHHHHHH----cCCcEEEEeCCCcchHHHHHHHH-HHhCccccCcccccChHHHH
Confidence 57899999999999999999999999999999 59999999999999999999999 599998 99999999 5699
Q ss_pred HHHHHHhc-CCCeEEEEcCchhHHHHhhcCceEecCccc-------------------cccccccCCCCcchhhhhhhhh
Q 044580 132 FKQLFNRF-ENEFIVAVGKGEPAAVMAEYGFKNVLSIDE-------------------YASYFDGIDPLAQYKKWNIKHA 191 (269)
Q Consensus 132 ~~~L~~~~-~~k~VlvvG~~~~~~v~~~~Gf~~v~t~~d-------------------~~~~~p~ldp~~~y~~~~~~~~ 191 (269)
+.||.+.. .+++||++|+.+.++.|+.+||+......+ +.++..++|+...|.|+.++..
T Consensus 96 a~ylk~~~~~~k~Vyvig~~gi~~eL~~aG~~~~g~~~~~~~~~~~~~~~~~~~~d~~VgAVvvg~D~hfsy~KL~kA~~ 175 (306)
T KOG2882|consen 96 ADYLKKRKPFGKKVYVIGEEGIREELDEAGFEYFGGGPDGKDTDGAKSFVLSIGLDPDVGAVVVGYDEHFSYPKLMKALN 175 (306)
T ss_pred HHHHHHhCcCCCeEEEecchhhhHHHHHcCceeecCCCCcccccccccchhhcCCCCCCCEEEEecccccCHHHHHHHHH
Confidence 99997665 679999999999999999999998754322 4566678888888988876543
No 11
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=99.68 E-value=4.2e-16 Score=141.33 Aligned_cols=120 Identities=21% Similarity=0.264 Sum_probs=94.4
Q ss_pred cEEEEecCceeecCCc----cccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcchH-
Q 044580 56 FGIAFDIDGVVLLGNT----PIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGHS- 130 (269)
Q Consensus 56 ~a~lFDIDGVL~~G~~----~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~t- 130 (269)
++|+||+|||||++.. ++|||.+|++.|++ .|++++|+|||++++++++.++| +.+|+++++++|++|+.
T Consensus 2 k~i~~D~DGtl~~~~~~~~~~~~~a~~al~~l~~----~G~~~~~~Tn~~~~~~~~~~~~l-~~~g~~~~~~~i~ts~~~ 76 (257)
T TIGR01458 2 KGVLLDISGVLYISDAKSGVAVPGSQEAVKRLRG----ASVKVRFVTNTTKESKQDLLERL-QRLGFDISEDEVFTPAPA 76 (257)
T ss_pred CEEEEeCCCeEEeCCCcccCcCCCHHHHHHHHHH----CCCeEEEEECCCCCCHHHHHHHH-HHcCCCCCHHHeEcHHHH
Confidence 5899999999999988 99999999999998 49999999999999999999999 58999999999999874
Q ss_pred HHHHHHHhcCCCeEEEEcCchhHHHHhhcCceEecCccccccccccCCC-Ccchhhhhh
Q 044580 131 PFKQLFNRFENEFIVAVGKGEPAAVMAEYGFKNVLSIDEYASYFDGIDP-LAQYKKWNI 188 (269)
Q Consensus 131 p~~~L~~~~~~k~VlvvG~~~~~~v~~~~Gf~~v~t~~d~~~~~p~ldp-~~~y~~~~~ 188 (269)
...+|.+. +.++|++|+++..+.++ |+. .++...+.-+.+. ...|.++..
T Consensus 77 ~~~~l~~~--~~~~~~~g~~~~~~~~~--~~~----~~~~~~Vv~g~~~~~~~y~~l~~ 127 (257)
T TIGR01458 77 ARQLLEEK--QLRPMLLVDDRVLPDFD--GID----TSDPNCVVMGLAPEHFSYQILNQ 127 (257)
T ss_pred HHHHHHhc--CCCeEEEECccHHHHhc--cCC----CCCCCEEEEecccCccCHHHHHH
Confidence 45556543 24588989887766665 432 2344445556644 355666554
No 12
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=99.52 E-value=3.8e-13 Score=120.37 Aligned_cols=101 Identities=23% Similarity=0.303 Sum_probs=78.2
Q ss_pred CccEEEEecCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCC-CCCcEEcchHH-
Q 044580 54 PSFGIAFDIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNI-LPCQVVQGHSP- 131 (269)
Q Consensus 54 ~~~a~lFDIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i-~~~qVi~s~tp- 131 (269)
.+++|+||+||||+++..++|||.++|+.|++ .|+++.|+||++ ++..+++++| +.+|++. ..+.|+++...
T Consensus 7 ~~~~~~~D~dG~l~~~~~~~pga~e~L~~L~~----~G~~~~ivTN~~-~~~~~~~~~L-~~~gl~~~~~~~Ii~s~~~~ 80 (242)
T TIGR01459 7 DYDVFLLDLWGVIIDGNHTYPGAVQNLNKIIA----QGKPVYFVSNSP-RNIFSLHKTL-KSLGINADLPEMIISSGEIA 80 (242)
T ss_pred cCCEEEEecccccccCCccCccHHHHHHHHHH----CCCEEEEEeCCC-CChHHHHHHH-HHCCCCccccceEEccHHHH
Confidence 58899999999999999999999999999998 599999999965 6677777888 5899998 67899997632
Q ss_pred HHHHH---Hhc--CCCeEEEEcCchh-HHHHhhcC
Q 044580 132 FKQLF---NRF--ENEFIVAVGKGEP-AAVMAEYG 160 (269)
Q Consensus 132 ~~~L~---~~~--~~k~VlvvG~~~~-~~v~~~~G 160 (269)
..++. +++ ..+.++++|+... .+.++..|
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~vGd~~~d~~~~~~~~ 115 (242)
T TIGR01459 81 VQMILESKKRFDIRNGIIYLLGHLENDIINLMQCY 115 (242)
T ss_pred HHHHHhhhhhccCCCceEEEeCCcccchhhhcCCC
Confidence 23332 332 3467899998642 44444444
No 13
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=99.28 E-value=1.7e-11 Score=107.98 Aligned_cols=92 Identities=20% Similarity=0.299 Sum_probs=81.2
Q ss_pred CCccEEEEecCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcchHHH
Q 044580 53 RPSFGIAFDIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGHSPF 132 (269)
Q Consensus 53 ~~~~a~lFDIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~tp~ 132 (269)
...+++++||-|||+....++|||.||+++|+. .+..+-|+||.+..|.....++| +++|+++++++|++|.+++
T Consensus 5 ~~v~gvLlDlSGtLh~e~~avpga~eAl~rLr~----~~~kVkFvTNttk~Sk~~l~~rL-~rlgf~v~eeei~tsl~aa 79 (262)
T KOG3040|consen 5 RAVKGVLLDLSGTLHIEDAAVPGAVEALKRLRD----QHVKVKFVTNTTKESKRNLHERL-QRLGFDVSEEEIFTSLPAA 79 (262)
T ss_pred cccceEEEeccceEecccccCCCHHHHHHHHHh----cCceEEEEecCcchhHHHHHHHH-HHhCCCccHHHhcCccHHH
Confidence 467899999999999999999999999999997 49999999999999999999999 5999999999999999888
Q ss_pred HHHHHhcCCCeEEEEcC
Q 044580 133 KQLFNRFENEFIVAVGK 149 (269)
Q Consensus 133 ~~L~~~~~~k~VlvvG~ 149 (269)
+.+.++.+-+.-|++-+
T Consensus 80 ~~~~~~~~lrP~l~v~d 96 (262)
T KOG3040|consen 80 RQYLEENQLRPYLIVDD 96 (262)
T ss_pred HHHHHhcCCCceEEEcc
Confidence 77776655555555543
No 14
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=98.94 E-value=1.2e-08 Score=82.61 Aligned_cols=102 Identities=24% Similarity=0.281 Sum_probs=72.9
Q ss_pred cEEEEecCceeecC---------CccccchHHHHHHHHhhcCCCCceEEEEeCCCCCC-----HHHHHHHHHHHcCCCCC
Q 044580 56 FGIAFDIDGVVLLG---------NTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFR-----ESKRATELSKLLGVNIL 121 (269)
Q Consensus 56 ~a~lFDIDGVL~~G---------~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~s-----e~~~a~~Ls~~lGi~i~ 121 (269)
++++||+||||+++ ..+.||+.++|+.|++ .|++++++||+++.. ++...+.+ +.+|+...
T Consensus 1 k~~~~D~dgtL~~~~~~~~~~~~~~~~~~v~~~l~~L~~----~g~~l~i~Sn~~~~~~~~~~~~~~~~~l-~~~~l~~~ 75 (132)
T TIGR01662 1 KGVVLDLDGTLTDDVPYVDDEDERILYPEVPDALAELKE----AGYKVVIVTNQSGIGRGKFSSGRVARRL-EELGVPID 75 (132)
T ss_pred CEEEEeCCCceecCCCCCCCHHHheeCCCHHHHHHHHHH----CCCEEEEEECCccccccHHHHHHHHHHH-HHCCCCEE
Confidence 58999999999974 4689999999999998 499999999987443 23334444 67887632
Q ss_pred CCcEEcc-------hHHHHHHHHhcC---CCeEEEEcCc--hhHHHHhhcCceEe
Q 044580 122 PCQVVQG-------HSPFKQLFNRFE---NEFIVAVGKG--EPAAVMAEYGFKNV 164 (269)
Q Consensus 122 ~~qVi~s-------~tp~~~L~~~~~---~k~VlvvG~~--~~~~v~~~~Gf~~v 164 (269)
.++.+ ..++.++.++++ ...++++|+. .....++.+|++.+
T Consensus 76 --~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~v~IGD~~~~Di~~A~~~Gi~~i 128 (132)
T TIGR01662 76 --VLYACPHCRKPKPGMFLEALKRFNEIDPEESVYVGDQDLTDLQAAKRAGLAFI 128 (132)
T ss_pred --EEEECCCCCCCChHHHHHHHHHcCCCChhheEEEcCCCcccHHHHHHCCCeEE
Confidence 22211 145555666652 3568889983 45677899998876
No 15
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=98.71 E-value=1.2e-07 Score=81.00 Aligned_cols=107 Identities=18% Similarity=0.218 Sum_probs=73.2
Q ss_pred CCCccEEEEecCceeecCCc-------------cccchHHHHHHHHhhcCCCCceEEEEeCCCCC-----CHH---HHHH
Q 044580 52 QRPSFGIAFDIDGVVLLGNT-------------PIGGSNKALKRLYQHSGDLRIPYIFLTNGGGF-----RES---KRAT 110 (269)
Q Consensus 52 ~~~~~a~lFDIDGVL~~G~~-------------~iPgA~eal~~L~~~~~~~gip~iflTN~~~~-----se~---~~a~ 110 (269)
.+..+.++||+||||+.... ++||+.++|+.|++ .|+++.++||+++. +.+ .+++
T Consensus 10 ~~~~k~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~----~G~~l~I~TN~~~~~~~~~~~~~~~~~i~ 85 (166)
T TIGR01664 10 KPQSKVAAFDLDGTLITTRSGKVFPTSASDWRFLYPEIPAKLQELDD----EGYKIVIFTNQSGIGRGKLSAESFKNKIE 85 (166)
T ss_pred CCcCcEEEEeCCCceEecCCCCcccCChHHeEEecCCHHHHHHHHHH----CCCEEEEEeCCcccccCcccHHHHHHHHH
Confidence 44568899999999998543 46999999999998 49999999998753 111 1233
Q ss_pred HHHHHcCCCCCCCcEEcch---------HHHHHHHHhcC----CCeEEEEcCch---------hHHHHhhcCceEe
Q 044580 111 ELSKLLGVNILPCQVVQGH---------SPFKQLFNRFE----NEFIVAVGKGE---------PAAVMAEYGFKNV 164 (269)
Q Consensus 111 ~Ls~~lGi~i~~~qVi~s~---------tp~~~L~~~~~----~k~VlvvG~~~---------~~~v~~~~Gf~~v 164 (269)
++-+.+|+.. ..++.++ .++..+.++++ ...+++||+.. ..+.++.+|.+.+
T Consensus 86 ~~l~~~gl~~--~~ii~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~v~VGD~~~~~~~~~~~Di~aA~~aGi~~~ 159 (166)
T TIGR01664 86 AFLEKLKVPI--QVLAATHAGLYRKPMTGMWEYLQSQYNSPIKMTRSFYVGDAAGRKLDFSDADIKFAKNLGLEFK 159 (166)
T ss_pred HHHHHcCCCE--EEEEecCCCCCCCCccHHHHHHHHHcCCCCCchhcEEEECCCCCCCCCchhHHHHHHHCCCCcC
Confidence 3336788753 2333221 34455556554 34688889763 5677899997753
No 16
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=98.66 E-value=3.1e-07 Score=71.72 Aligned_cols=99 Identities=21% Similarity=0.245 Sum_probs=67.5
Q ss_pred EEEEecCceeecCC---------ccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEc
Q 044580 57 GIAFDIDGVVLLGN---------TPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQ 127 (269)
Q Consensus 57 a~lFDIDGVL~~G~---------~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~ 127 (269)
.++||+||||+... .+.|++.++++.|+++ |++++++||+. .......+ +.+|+....+.++.
T Consensus 1 ~~vfD~D~tl~~~~~~~~~~~~~~~~~~~~~~l~~l~~~----g~~i~ivS~~~---~~~~~~~~-~~~~~~~~~~~i~~ 72 (139)
T cd01427 1 AVLFDLDGTLLDSEPGIAEIEELELYPGVKEALKELKEK----GIKLALATNKS---RREVLELL-EELGLDDYFDPVIT 72 (139)
T ss_pred CeEEccCCceEccCccccccccCCcCcCHHHHHHHHHHC----CCeEEEEeCch---HHHHHHHH-HHcCCchhhhheec
Confidence 47999999999988 7899999999999984 89999999986 44444445 57777434455554
Q ss_pred ch-------------------------HHHHHHHHhcCC--CeEEEEcCch-hHHHHhhcCceE
Q 044580 128 GH-------------------------SPFKQLFNRFEN--EFIVAVGKGE-PAAVMAEYGFKN 163 (269)
Q Consensus 128 s~-------------------------tp~~~L~~~~~~--k~VlvvG~~~-~~~v~~~~Gf~~ 163 (269)
+. .....+.+++.. +.++++|+.. ..+.++..|...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igD~~~d~~~~~~~g~~~ 136 (139)
T cd01427 73 SNGAAIYYPKEGLFLGGGPFDIGKPNPDKLLAALKLLGVDPEEVLMVGDSLNDIEMAKAAGGLG 136 (139)
T ss_pred cchhhhhcccccccccccccccCCCCHHHHHHHHHHcCCChhhEEEeCCCHHHHHHHHHcCCce
Confidence 22 122233344332 4677788763 345666667654
No 17
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=98.60 E-value=5.8e-07 Score=74.60 Aligned_cols=105 Identities=22% Similarity=0.236 Sum_probs=72.0
Q ss_pred cEEEEecCceeecCCc-----------cccchHHHHHHHHhhcCCCCceEEEEeCCCCCC-----------HHHHHHHHH
Q 044580 56 FGIAFDIDGVVLLGNT-----------PIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFR-----------ESKRATELS 113 (269)
Q Consensus 56 ~a~lFDIDGVL~~G~~-----------~iPgA~eal~~L~~~~~~~gip~iflTN~~~~s-----------e~~~a~~Ls 113 (269)
.+++||+||||..+.. +.||+.++|+.|++ .|++++++||+.... ...++..+-
T Consensus 1 ~~~~~d~dgtl~~~~~~~~~~~~~~~~~~~g~~~~l~~Lk~----~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l 76 (147)
T TIGR01656 1 PALFLDRDGVINEDTVSDYPRSLDDWQLRPGAVPALLTLRA----AGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELL 76 (147)
T ss_pred CeEEEeCCCceeccCCcccCCCHHHeEEcCChHHHHHHHHH----CCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHH
Confidence 4799999999999884 79999999999998 499999999986311 112333333
Q ss_pred HHcCCCCCCCcEE------------c-chHHHHHHHHhcCC--CeEEEEcCc-hhHHHHhhcCceEec
Q 044580 114 KLLGVNILPCQVV------------Q-GHSPFKQLFNRFEN--EFIVAVGKG-EPAAVMAEYGFKNVL 165 (269)
Q Consensus 114 ~~lGi~i~~~qVi------------~-s~tp~~~L~~~~~~--k~VlvvG~~-~~~~v~~~~Gf~~v~ 165 (269)
+.+|+... ..++ . ...++.++.++++- ..+++||.. ...+.++.+|++.+.
T Consensus 77 ~~~~l~~~-~~~~~~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~e~i~IGDs~~Di~~A~~~Gi~~v~ 143 (147)
T TIGR01656 77 RQLGVAVD-GVLFCPHHPADNCSCRKPKPGLILEALKRLGVDASRSLVVGDRLRDLQAARNAGLAAVL 143 (147)
T ss_pred HhCCCcee-EEEECCCCCCCCCCCCCCCHHHHHHHHHHcCCChHHEEEEcCCHHHHHHHHHCCCCEEE
Confidence 57887532 1111 1 12455556666653 458889986 345678999988763
No 18
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=98.54 E-value=7.4e-07 Score=76.00 Aligned_cols=105 Identities=19% Similarity=0.272 Sum_probs=74.5
Q ss_pred CCccEEEEecCceeecC--CccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcchH
Q 044580 53 RPSFGIAFDIDGVVLLG--NTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGHS 130 (269)
Q Consensus 53 ~~~~a~lFDIDGVL~~G--~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~t 130 (269)
...+++++|+||||+.. ..+.||+.++|+.|++ .|++++++||+.. ...++.+.+.+|+.......=....
T Consensus 23 ~~v~~vv~D~Dgtl~~~~~~~~~pgv~e~L~~Lk~----~g~~l~I~Sn~~~---~~~~~~~~~~~gl~~~~~~~KP~p~ 95 (170)
T TIGR01668 23 VGIKGVVLDKDNTLVYPDHNEAYPALRDWIEELKA----AGRKLLIVSNNAG---EQRAKAVEKALGIPVLPHAVKPPGC 95 (170)
T ss_pred CCCCEEEEecCCccccCCCCCcChhHHHHHHHHHH----cCCEEEEEeCCch---HHHHHHHHHHcCCEEEcCCCCCChH
Confidence 57899999999999953 3589999999999998 4999999999863 3445555457776532111100224
Q ss_pred HHHHHHHhcC--CCeEEEEcCch--hHHHHhhcCceEe
Q 044580 131 PFKQLFNRFE--NEFIVAVGKGE--PAAVMAEYGFKNV 164 (269)
Q Consensus 131 p~~~L~~~~~--~k~VlvvG~~~--~~~v~~~~Gf~~v 164 (269)
.+..+.++++ .+.+++||+.. ....++.+|++.+
T Consensus 96 ~~~~~l~~~~~~~~~~l~IGDs~~~Di~aA~~aGi~~i 133 (170)
T TIGR01668 96 AFRRAHPEMGLTSEQVAVVGDRLFTDVMGGNRNGSYTI 133 (170)
T ss_pred HHHHHHHHcCCCHHHEEEECCcchHHHHHHHHcCCeEE
Confidence 5555556554 35689999874 4667899998875
No 19
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=98.41 E-value=4e-06 Score=71.30 Aligned_cols=103 Identities=14% Similarity=0.165 Sum_probs=72.5
Q ss_pred cEEEEecCceeecCC------------ccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCH-----------HHHHHHH
Q 044580 56 FGIAFDIDGVVLLGN------------TPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRE-----------SKRATEL 112 (269)
Q Consensus 56 ~a~lFDIDGVL~~G~------------~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se-----------~~~a~~L 112 (269)
++++||.||||+... .++||+.++|+.|++ .|++++++||.+|..+ ...+.++
T Consensus 2 ~~~~~d~dg~l~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~----~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~ 77 (161)
T TIGR01261 2 KILFIDRDGTLIEEPPSDFQVDALEKLRFEKGVIPALLKLKK----AGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQI 77 (161)
T ss_pred CEEEEeCCCCccccCCCccccCCHHHeeECCCHHHHHHHHHH----CCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHH
Confidence 578999999999832 378999999999998 4999999999865321 2344444
Q ss_pred HHHcCCCCCCCcEEc-------------c-hHHHHHHHHhcCC--CeEEEEcCc-hhHHHHhhcCceEe
Q 044580 113 SKLLGVNILPCQVVQ-------------G-HSPFKQLFNRFEN--EFIVAVGKG-EPAAVMAEYGFKNV 164 (269)
Q Consensus 113 s~~lGi~i~~~qVi~-------------s-~tp~~~L~~~~~~--k~VlvvG~~-~~~~v~~~~Gf~~v 164 (269)
-+.+|+.+ +.++. . ...+.++.++++. ..++++|.. ...+.++..|++.+
T Consensus 78 l~~~gl~f--d~ii~~~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~e~l~IGD~~~Di~~A~~aGi~~i 144 (161)
T TIGR01261 78 FRSQGIIF--DDVLICPHFPDDNCDCRKPKIKLLEPYLKKNLIDKARSYVIGDRETDMQLAENLGIRGI 144 (161)
T ss_pred HHHCCCce--eEEEECCCCCCCCCCCCCCCHHHHHHHHHHcCCCHHHeEEEeCCHHHHHHHHHCCCeEE
Confidence 46788874 23331 1 1445556666642 358889975 34577999999876
No 20
>PRK06769 hypothetical protein; Validated
Probab=98.30 E-value=1e-05 Score=69.14 Aligned_cols=102 Identities=18% Similarity=0.116 Sum_probs=70.0
Q ss_pred CccEEEEecCceeecC--------CccccchHHHHHHHHhhcCCCCceEEEEeCCCCC-----CHHHHHHHHHHHcCCCC
Q 044580 54 PSFGIAFDIDGVVLLG--------NTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGF-----RESKRATELSKLLGVNI 120 (269)
Q Consensus 54 ~~~a~lFDIDGVL~~G--------~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~-----se~~~a~~Ls~~lGi~i 120 (269)
++++++||.||||... -.++||+.++|+.|++ .|+++.++||++.. ........+ +.+|+.
T Consensus 3 ~~~~~~~d~d~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~----~G~~l~I~Tn~~~~~~~~~~~~~~~~~l-~~~g~~- 76 (173)
T PRK06769 3 NIQAIFIDRDGTIGGDTTIHYPGSFTLFPFTKASLQKLKA----NHIKIFSFTNQPGIADGIATIADFVQEL-KGFGFD- 76 (173)
T ss_pred CCcEEEEeCCCcccCCCCCCCHHHeEECCCHHHHHHHHHH----CCCEEEEEECCchhcCCcCCHHHHHHHH-HhCCcC-
Confidence 6899999999999422 2478999999999998 49999999998742 222344445 467764
Q ss_pred CCCcEEc-------------ch-HHHHHHHHhcC--CCeEEEEcCch-hHHHHhhcCceEe
Q 044580 121 LPCQVVQ-------------GH-SPFKQLFNRFE--NEFIVAVGKGE-PAAVMAEYGFKNV 164 (269)
Q Consensus 121 ~~~qVi~-------------s~-tp~~~L~~~~~--~k~VlvvG~~~-~~~v~~~~Gf~~v 164 (269)
+++. .. .++....++++ ...+++||... ..+.++.+|++.+
T Consensus 77 ---~~~~~~~~~~~~~~~~KP~p~~~~~~~~~l~~~p~~~i~IGD~~~Di~aA~~aGi~~i 134 (173)
T PRK06769 77 ---DIYLCPHKHGDGCECRKPSTGMLLQAAEKHGLDLTQCAVIGDRWTDIVAAAKVNATTI 134 (173)
T ss_pred ---EEEECcCCCCCCCCCCCCCHHHHHHHHHHcCCCHHHeEEEcCCHHHHHHHHHCCCeEE
Confidence 2221 11 34455555654 34688899753 3466899999876
No 21
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=98.28 E-value=1.3e-05 Score=68.35 Aligned_cols=102 Identities=19% Similarity=0.163 Sum_probs=67.3
Q ss_pred cEEEEecCceeecCC---------ccccchHHHHHHHHhhcCCCCceEEEEeCCCCC-----CH------HHHHHHHHHH
Q 044580 56 FGIAFDIDGVVLLGN---------TPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGF-----RE------SKRATELSKL 115 (269)
Q Consensus 56 ~a~lFDIDGVL~~G~---------~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~-----se------~~~a~~Ls~~ 115 (269)
++++||.||||..+. .++||+.++|+.|++ .|++++++||+++. ++ ..+...+-+.
T Consensus 2 ~~~~~D~Dgtl~~~~~~~~~~~~~~~~pgv~e~L~~Lk~----~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l~~ 77 (176)
T TIGR00213 2 KAIFLDRDGTINIDHGYVHEIDNFEFIDGVIDALRELKK----MGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLAE 77 (176)
T ss_pred CEEEEeCCCCEeCCCCCCCCHHHeEECCCHHHHHHHHHH----CCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHH
Confidence 588999999999532 368999999999998 49999999999852 22 1222222235
Q ss_pred cCCCCCCCcEEc-------------------ch-HHHHHHHHhcC--CCeEEEEcCc-hhHHHHhhcCceE
Q 044580 116 LGVNILPCQVVQ-------------------GH-SPFKQLFNRFE--NEFIVAVGKG-EPAAVMAEYGFKN 163 (269)
Q Consensus 116 lGi~i~~~qVi~-------------------s~-tp~~~L~~~~~--~k~VlvvG~~-~~~~v~~~~Gf~~ 163 (269)
+|+.++ .++. .+ .++....++++ ...+++||.. ...+.++.+|++.
T Consensus 78 ~~~~~~--~i~~~~~~~~~~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~v~VGDs~~Di~aA~~aG~~~ 146 (176)
T TIGR00213 78 RDVDLD--GIYYCPHHPEGVEEFRQVCDCRKPKPGMLLQARKELHIDMAQSYMVGDKLEDMQAGVAAKVKT 146 (176)
T ss_pred cCCCcc--EEEECCCCCcccccccCCCCCCCCCHHHHHHHHHHcCcChhhEEEEcCCHHHHHHHHHCCCcE
Confidence 565532 2221 11 34444455554 3467788975 3456789999876
No 22
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=98.25 E-value=1.1e-05 Score=69.32 Aligned_cols=102 Identities=18% Similarity=0.245 Sum_probs=72.2
Q ss_pred CCCccEEEEecCceee--cCCccccchHHHHHHHHhhcCCCCc-eEEEEeCCCCCC---HHHHHHHHHHHcCCCCCCCcE
Q 044580 52 QRPSFGIAFDIDGVVL--LGNTPIGGSNKALKRLYQHSGDLRI-PYIFLTNGGGFR---ESKRATELSKLLGVNILPCQV 125 (269)
Q Consensus 52 ~~~~~a~lFDIDGVL~--~G~~~iPgA~eal~~L~~~~~~~gi-p~iflTN~~~~s---e~~~a~~Ls~~lGi~i~~~qV 125 (269)
...+++++||.|.||. +..++-|...++++.+++. .+. .++++||+.|.. ..+.++.+++.+|+++ +
T Consensus 38 ~~Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~---~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIpv----l 110 (168)
T PF09419_consen 38 KKGIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQ---FGKDRVLIVSNSAGSSDDPDGERAEALEKALGIPV----L 110 (168)
T ss_pred hcCceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHH---CCCCeEEEEECCCCcccCccHHHHHHHHHhhCCcE----E
Confidence 4689999999999996 4456778899999999984 333 699999997655 4678899999999873 1
Q ss_pred Ec-ch------HHHHHHHHh---cCCCeEEEEcCchhHHHH--hhcC
Q 044580 126 VQ-GH------SPFKQLFNR---FENEFIVAVGKGEPAAVM--AEYG 160 (269)
Q Consensus 126 i~-s~------tp~~~L~~~---~~~k~VlvvG~~~~~~v~--~~~G 160 (269)
.. +. ..++++..+ ...+.+.|||+.-..+++ ..+|
T Consensus 111 ~h~~kKP~~~~~i~~~~~~~~~~~~p~eiavIGDrl~TDVl~gN~~G 157 (168)
T PF09419_consen 111 RHRAKKPGCFREILKYFKCQKVVTSPSEIAVIGDRLFTDVLMGNRMG 157 (168)
T ss_pred EeCCCCCccHHHHHHHHhhccCCCCchhEEEEcchHHHHHHHhhccC
Confidence 11 11 233333222 124568899998777774 5577
No 23
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=98.23 E-value=5.7e-06 Score=67.40 Aligned_cols=42 Identities=19% Similarity=0.234 Sum_probs=37.0
Q ss_pred cEEEEecCceeecCC-------------ccccchHHHHHHHHhhcCCCCceEEEEeCCC
Q 044580 56 FGIAFDIDGVVLLGN-------------TPIGGSNKALKRLYQHSGDLRIPYIFLTNGG 101 (269)
Q Consensus 56 ~a~lFDIDGVL~~G~-------------~~iPgA~eal~~L~~~~~~~gip~iflTN~~ 101 (269)
+.++||+|||||.+. .++||+.+.|+.|++ .|+++.++||++
T Consensus 1 kli~~DlD~Tl~~~~~~~~~~~~~~~~~~~~~gv~e~L~~Lk~----~g~~l~i~Sn~~ 55 (128)
T TIGR01681 1 KVIVFDLDNTLWTGENIVVGEDPIIDLEVTIKEIRDKLQTLKK----NGFLLALASYND 55 (128)
T ss_pred CEEEEeCCCCCCCCCcccccCCcchhhHHHHHHHHHHHHHHHH----CCeEEEEEeCCC
Confidence 478999999999983 268999999999998 499999999983
No 24
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=98.22 E-value=9.6e-06 Score=74.54 Aligned_cols=91 Identities=16% Similarity=0.285 Sum_probs=66.5
Q ss_pred CCccEEEEecCceeec-----------C----------------CccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCH
Q 044580 53 RPSFGIAFDIDGVVLL-----------G----------------NTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRE 105 (269)
Q Consensus 53 ~~~~a~lFDIDGVL~~-----------G----------------~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se 105 (269)
....+|+||||+|++. | ..++|||.++++.|++ .|++++|+||+....+
T Consensus 73 ~kp~AVV~DIDeTvLdns~y~~~~~~~~~~~~~~~w~~wv~~~~a~~ipGA~e~L~~L~~----~G~~v~iVTnR~~~~~ 148 (266)
T TIGR01533 73 DKKYAIVLDLDETVLDNSPYQGYQVLNNKPFDPETWDKWVQAAQAKPVAGALDFLNYANS----KGVKIFYVSNRSEKEK 148 (266)
T ss_pred CCCCEEEEeCccccccChHHHHHHhcCCCcCCHHHHHHHHHcCCCCcCccHHHHHHHHHH----CCCeEEEEeCCCcchH
Confidence 3467999999999962 1 1368999999999998 5999999999987777
Q ss_pred HHHHHHHHHHcCCCC-CCCcEEcc-h-----HHHHHHHHhcCCCeEEEEcCc
Q 044580 106 SKRATELSKLLGVNI-LPCQVVQG-H-----SPFKQLFNRFENEFIVAVGKG 150 (269)
Q Consensus 106 ~~~a~~Ls~~lGi~i-~~~qVi~s-~-----tp~~~L~~~~~~k~VlvvG~~ 150 (269)
+...+.| +.+|++. ..+.|++- . .....+.+.| +-++++|+.
T Consensus 149 ~~T~~~L-kk~Gi~~~~~d~lllr~~~~~K~~rr~~I~~~y--~Ivl~vGD~ 197 (266)
T TIGR01533 149 AATLKNL-KRFGFPQADEEHLLLKKDKSSKESRRQKVQKDY--EIVLLFGDN 197 (266)
T ss_pred HHHHHHH-HHcCcCCCCcceEEeCCCCCCcHHHHHHHHhcC--CEEEEECCC
Confidence 7777888 5899975 45677762 1 2233343444 337778864
No 25
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=98.17 E-value=3.6e-05 Score=65.70 Aligned_cols=104 Identities=24% Similarity=0.231 Sum_probs=69.4
Q ss_pred CccEEEEecCceeecCC----------ccccchHHHHHHHHhhcCCCCceEEEEeCCCCC-----CHH------HHH-HH
Q 044580 54 PSFGIAFDIDGVVLLGN----------TPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGF-----RES------KRA-TE 111 (269)
Q Consensus 54 ~~~a~lFDIDGVL~~G~----------~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~-----se~------~~a-~~ 111 (269)
.+++++||.||||.... .++||+.++|+.|++ .|+++.++||+++. .+. ++. ..
T Consensus 2 ~~~~~~~d~~~t~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~----~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~ 77 (181)
T PRK08942 2 SMKAIFLDRDGVINVDSDGYVKSPDEWIPIPGSIEAIARLKQ----AGYRVVVATNQSGIARGLFTEAQLNALHEKMDWS 77 (181)
T ss_pred CccEEEEECCCCcccCCccccCCHHHeEECCCHHHHHHHHHH----CCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHH
Confidence 57899999999997544 479999999999998 49999999998742 221 122 23
Q ss_pred HHHHcCCCCCCCcEEcc--------------hHHHHHHHHhcC--CCeEEEEcCch-hHHHHhhcCceEe
Q 044580 112 LSKLLGVNILPCQVVQG--------------HSPFKQLFNRFE--NEFIVAVGKGE-PAAVMAEYGFKNV 164 (269)
Q Consensus 112 Ls~~lGi~i~~~qVi~s--------------~tp~~~L~~~~~--~k~VlvvG~~~-~~~v~~~~Gf~~v 164 (269)
| +.+|+.+ +.++.+ -.++....++++ ...+++||+.. ....++.+|+..+
T Consensus 78 l-~~~g~~f--~~i~~~~~~~~~~~~~~KP~p~~~~~~~~~l~~~~~~~~~VgDs~~Di~~A~~aG~~~i 144 (181)
T PRK08942 78 L-ADRGGRL--DGIYYCPHHPEDGCDCRKPKPGMLLSIAERLNIDLAGSPMVGDSLRDLQAAAAAGVTPV 144 (181)
T ss_pred H-HHcCCcc--ceEEECCCCCCCCCcCCCCCHHHHHHHHHHcCCChhhEEEEeCCHHHHHHHHHCCCeEE
Confidence 4 3567642 233321 133444555553 35688899753 3566899998654
No 26
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=98.15 E-value=2.1e-05 Score=71.11 Aligned_cols=103 Identities=15% Similarity=0.229 Sum_probs=69.1
Q ss_pred ccEEEEecCceeecCCc---------------------------------cccc--hHHHHHHHHhhcCCCCceEEEEeC
Q 044580 55 SFGIAFDIDGVVLLGNT---------------------------------PIGG--SNKALKRLYQHSGDLRIPYIFLTN 99 (269)
Q Consensus 55 ~~a~lFDIDGVL~~G~~---------------------------------~iPg--A~eal~~L~~~~~~~gip~iflTN 99 (269)
..+|+|||||||++... .+|+ |.++|+.|++ .|+++.++||
T Consensus 63 p~aViFDlDgTLlDSs~~~~~G~~~~s~~~~~~l~g~~~w~~~~~~~~~~s~p~~~a~elL~~l~~----~G~~i~iVTn 138 (237)
T TIGR01672 63 PIAVSFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQR----RGDAIFFVTG 138 (237)
T ss_pred CeEEEEeCCCccccCcHHHhCCcccCCHHHhhhhcChHHHHHHHHhcccCCcchhHHHHHHHHHHH----CCCEEEEEeC
Confidence 44999999999987543 1344 8899999998 4999999999
Q ss_pred CCCCCHHHHHHHHHHHcCCCCCCCcEEcch-------HHHHHHHHhcCCCeEEEEcCc-hhHHHHhhcCceEe
Q 044580 100 GGGFRESKRATELSKLLGVNILPCQVVQGH-------SPFKQLFNRFENEFIVAVGKG-EPAAVMAEYGFKNV 164 (269)
Q Consensus 100 ~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~-------tp~~~L~~~~~~k~VlvvG~~-~~~~v~~~~Gf~~v 164 (269)
......+..++.|.+.+|++---+-|+.+. .+.. ..++++ .++++|+. .+...++.+|.+.+
T Consensus 139 r~~~k~~~~a~~ll~~lGi~~~f~~i~~~d~~~~~Kp~~~~-~l~~~~--i~i~vGDs~~DI~aAk~AGi~~I 208 (237)
T TIGR01672 139 RTPGKTDTVSKTLAKNFHIPAMNPVIFAGDKPGQYQYTKTQ-WIQDKN--IRIHYGDSDNDITAAKEAGARGI 208 (237)
T ss_pred CCCCcCHHHHHHHHHHhCCchheeEEECCCCCCCCCCCHHH-HHHhCC--CeEEEeCCHHHHHHHHHCCCCEE
Confidence 864435567777766799963223333321 2333 334443 26778875 34567889997754
No 27
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=98.13 E-value=8.7e-06 Score=69.93 Aligned_cols=104 Identities=15% Similarity=0.207 Sum_probs=71.1
Q ss_pred CCccEEEEecCceeecCCccccch-----------HHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCC
Q 044580 53 RPSFGIAFDIDGVVLLGNTPIGGS-----------NKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNIL 121 (269)
Q Consensus 53 ~~~~a~lFDIDGVL~~G~~~iPgA-----------~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~ 121 (269)
+..++++||+||||..|.-.+-+. ..+++.|++ .|+++.++||+... .....+ +.+|+.--
T Consensus 5 ~~i~~~v~d~dGv~tdg~~~~~~~g~~~~~~~~~D~~~~~~L~~----~Gi~laIiT~k~~~---~~~~~l-~~lgi~~~ 76 (169)
T TIGR02726 5 KNIKLVILDVDGVMTDGRIVINDEGIESRNFDIKDGMGVIVLQL----CGIDVAIITSKKSG---AVRHRA-EELKIKRF 76 (169)
T ss_pred ccCeEEEEeCceeeECCeEEEcCCCcEEEEEecchHHHHHHHHH----CCCEEEEEECCCcH---HHHHHH-HHCCCcEE
Confidence 358999999999999996544332 458999998 59999999998532 333344 67888611
Q ss_pred CCcEEcc-hHHHHHHHHhcC--CCeEEEEcCc-hhHHHHhhcCceEec
Q 044580 122 PCQVVQG-HSPFKQLFNRFE--NEFIVAVGKG-EPAAVMAEYGFKNVL 165 (269)
Q Consensus 122 ~~qVi~s-~tp~~~L~~~~~--~k~VlvvG~~-~~~~v~~~~Gf~~v~ 165 (269)
-+. +.. -.++..+.++++ ...++++|+. .....++.+|+..+.
T Consensus 77 f~~-~kpkp~~~~~~~~~l~~~~~ev~~iGD~~nDi~~~~~ag~~~am 123 (169)
T TIGR02726 77 HEG-IKKKTEPYAQMLEEMNISDAEVCYVGDDLVDLSMMKRVGLAVAV 123 (169)
T ss_pred Eec-CCCCHHHHHHHHHHcCcCHHHEEEECCCHHHHHHHHHCCCeEEC
Confidence 111 121 256666667664 3468999986 456778999988765
No 28
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=98.13 E-value=1.6e-05 Score=68.51 Aligned_cols=100 Identities=20% Similarity=0.266 Sum_probs=68.2
Q ss_pred CccEEEEecCceeecC-------Cccc-cchH---HHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCC
Q 044580 54 PSFGIAFDIDGVVLLG-------NTPI-GGSN---KALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILP 122 (269)
Q Consensus 54 ~~~a~lFDIDGVL~~G-------~~~i-PgA~---eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~ 122 (269)
.++.|+||+||||..+ +..+ +-.. .+++.|++ .|++++++||... ..+..+.+.+|+.
T Consensus 20 ~ikli~~D~Dgtl~~~~i~~~~~~~~~~~~~~~d~~~i~~L~~----~Gi~v~I~T~~~~----~~v~~~l~~lgl~--- 88 (183)
T PRK09484 20 NIRLLICDVDGVFSDGLIYMGNNGEELKAFNVRDGYGIRCLLT----SGIEVAIITGRKS----KLVEDRMTTLGIT--- 88 (183)
T ss_pred CceEEEEcCCeeeecCEEEEcCCCCEEEEEeccchHHHHHHHH----CCCEEEEEeCCCc----HHHHHHHHHcCCc---
Confidence 5899999999999986 3322 2222 68899987 4999999999842 2233333678875
Q ss_pred CcEEcc----hHHHHHHHHhcCC--CeEEEEcCc-hhHHHHhhcCceEec
Q 044580 123 CQVVQG----HSPFKQLFNRFEN--EFIVAVGKG-EPAAVMAEYGFKNVL 165 (269)
Q Consensus 123 ~qVi~s----~tp~~~L~~~~~~--k~VlvvG~~-~~~~v~~~~Gf~~v~ 165 (269)
.++.+ ..++..+.++++- +.++++|+. .....++.+|+..++
T Consensus 89 -~~f~g~~~k~~~l~~~~~~~gl~~~ev~~VGDs~~D~~~a~~aG~~~~v 137 (183)
T PRK09484 89 -HLYQGQSNKLIAFSDLLEKLAIAPEQVAYIGDDLIDWPVMEKVGLSVAV 137 (183)
T ss_pred -eeecCCCcHHHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHHCCCeEec
Confidence 23332 2556666666653 468889986 456778999988654
No 29
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=98.13 E-value=2.7e-05 Score=70.40 Aligned_cols=105 Identities=14% Similarity=0.201 Sum_probs=71.9
Q ss_pred CccEEEEecCceeecCC-----------------------------------ccccchHHHHHHHHhhcCCCCceEEEEe
Q 044580 54 PSFGIAFDIDGVVLLGN-----------------------------------TPIGGSNKALKRLYQHSGDLRIPYIFLT 98 (269)
Q Consensus 54 ~~~a~lFDIDGVL~~G~-----------------------------------~~iPgA~eal~~L~~~~~~~gip~iflT 98 (269)
+..+|+||||||++... .|.|||.+.|+.|++ .|++++++|
T Consensus 62 ~p~av~~DIDeTvldnsp~~~~~~~~f~~~~~~y~~~~~fw~~y~~~~~~~a~p~~Ga~elL~~L~~----~G~~I~iVT 137 (237)
T PRK11009 62 PPMAVGFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQKFWEKMNNGWDEFSIPKEVARQLIDMHVK----RGDSIYFIT 137 (237)
T ss_pred CCcEEEEECcCccccCCchheeeeeccCCCcccccChHHHHHHHHhcccccCcchHHHHHHHHHHHH----CCCeEEEEe
Confidence 34599999999999521 145679999999988 499999999
Q ss_pred CCCCCCHHHHHHHHHHHcCCCCC-CCcEEcc------hHHHHHHHHhcCCCeEEEEcCc-hhHHHHhhcCceEec
Q 044580 99 NGGGFRESKRATELSKLLGVNIL-PCQVVQG------HSPFKQLFNRFENEFIVAVGKG-EPAAVMAEYGFKNVL 165 (269)
Q Consensus 99 N~~~~se~~~a~~Ls~~lGi~i~-~~qVi~s------~tp~~~L~~~~~~k~VlvvG~~-~~~~v~~~~Gf~~v~ 165 (269)
|.+....+..++.|.+.+|++.+ ...++.+ +.+... .++++ .++++|+. .+...++.+|.+.+.
T Consensus 138 nR~~~k~~~t~~~Llk~~gip~~~~f~vil~gd~~~K~~K~~~-l~~~~--i~I~IGDs~~Di~aA~~AGi~~I~ 209 (237)
T PRK11009 138 GRTATKTETVSKTLADDFHIPADNMNPVIFAGDKPGQYTKTQW-LKKKN--IRIFYGDSDNDITAAREAGARGIR 209 (237)
T ss_pred CCCCcccHHHHHHHHHHcCCCcccceeEEEcCCCCCCCCHHHH-HHhcC--CeEEEcCCHHHHHHHHHcCCcEEE
Confidence 98755566778888666898533 2233332 123333 34443 36778875 345678999987653
No 30
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=98.12 E-value=2.1e-05 Score=69.74 Aligned_cols=85 Identities=16% Similarity=0.152 Sum_probs=55.1
Q ss_pred cccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcch---------HHHHHHHHhcC--
Q 044580 72 PIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGH---------SPFKQLFNRFE-- 140 (269)
Q Consensus 72 ~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~---------tp~~~L~~~~~-- 140 (269)
++||+.+.|+.|++ .|+++.++||++ .+.....| +.+|+.---+.|+.+. .++..+.++++
T Consensus 94 ~~~g~~e~L~~Lk~----~g~~~~i~Tn~~---~~~~~~~l-~~~~l~~~fd~iv~s~~~~~~KP~p~~~~~~~~~~~~~ 165 (224)
T PRK14988 94 LREDTVPFLEALKA----SGKRRILLTNAH---PHNLAVKL-EHTGLDAHLDLLLSTHTFGYPKEDQRLWQAVAEHTGLK 165 (224)
T ss_pred cCCCHHHHHHHHHh----CCCeEEEEeCcC---HHHHHHHH-HHCCcHHHCCEEEEeeeCCCCCCCHHHHHHHHHHcCCC
Confidence 35777777888877 599999999975 33344456 4677642234555421 34555556654
Q ss_pred CCeEEEEcCch-hHHHHhhcCceEe
Q 044580 141 NEFIVAVGKGE-PAAVMAEYGFKNV 164 (269)
Q Consensus 141 ~k~VlvvG~~~-~~~v~~~~Gf~~v 164 (269)
.+.++++|+.. ..+.++.+|.+.+
T Consensus 166 p~~~l~igDs~~di~aA~~aG~~~~ 190 (224)
T PRK14988 166 AERTLFIDDSEPILDAAAQFGIRYC 190 (224)
T ss_pred hHHEEEEcCCHHHHHHHHHcCCeEE
Confidence 34688899753 3567899998753
No 31
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=98.11 E-value=2.2e-05 Score=65.83 Aligned_cols=96 Identities=19% Similarity=0.282 Sum_probs=64.6
Q ss_pred cEEEEecCceeecCCc-------------cccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCC
Q 044580 56 FGIAFDIDGVVLLGNT-------------PIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILP 122 (269)
Q Consensus 56 ~a~lFDIDGVL~~G~~-------------~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~ 122 (269)
+.++||+||||+++.. ..++ .+++.|++ .|+.+.++||+... .....+ +.+|+.
T Consensus 2 ~~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~~~--~~i~~Lk~----~G~~i~IvTn~~~~---~~~~~l-~~~gi~--- 68 (154)
T TIGR01670 2 RLLILDVDGVLTDGKIYYTNNGEEIKAFNVRDG--YGIRCALK----SGIEVAIITGRKAK---LVEDRC-KTLGIT--- 68 (154)
T ss_pred eEEEEeCceeEEcCeEEECCCCcEEEEEechhH--HHHHHHHH----CCCEEEEEECCCCH---HHHHHH-HHcCCC---
Confidence 6899999999998532 1122 38999998 49999999998633 223344 678875
Q ss_pred CcEEc---ch-HHHHHHHHhcC--CCeEEEEcCc-hhHHHHhhcCceEec
Q 044580 123 CQVVQ---GH-SPFKQLFNRFE--NEFIVAVGKG-EPAAVMAEYGFKNVL 165 (269)
Q Consensus 123 ~qVi~---s~-tp~~~L~~~~~--~k~VlvvG~~-~~~~v~~~~Gf~~v~ 165 (269)
..+. +. .++..+.++++ .+.++++|+. .....++.+|....+
T Consensus 69 -~~~~~~~~k~~~~~~~~~~~~~~~~~~~~vGDs~~D~~~~~~ag~~~~v 117 (154)
T TIGR01670 69 -HLYQGQSNKLIAFSDILEKLALAPENVAYIGDDLIDWPVMEKVGLSVAV 117 (154)
T ss_pred -EEEecccchHHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHCCCeEec
Confidence 2222 22 45555556554 3468889976 456778999987554
No 32
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=98.08 E-value=4e-05 Score=66.73 Aligned_cols=85 Identities=18% Similarity=0.113 Sum_probs=57.7
Q ss_pred cccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcc---------hHHHHHHHHhcC--
Q 044580 72 PIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQG---------HSPFKQLFNRFE-- 140 (269)
Q Consensus 72 ~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s---------~tp~~~L~~~~~-- 140 (269)
++||+.++|+.|++ .|+++.++||+. +......| +.+|+.---+.|+.+ ..++..+.++++
T Consensus 83 ~~~g~~~~l~~L~~----~g~~~~i~S~~~---~~~~~~~l-~~~gl~~~f~~i~~~~~~~~~Kp~p~~~~~~~~~~~~~ 154 (214)
T PRK13288 83 EYETVYETLKTLKK----QGYKLGIVTTKM---RDTVEMGL-KLTGLDEFFDVVITLDDVEHAKPDPEPVLKALELLGAK 154 (214)
T ss_pred cCcCHHHHHHHHHH----CCCeEEEEeCCC---HHHHHHHH-HHcCChhceeEEEecCcCCCCCCCcHHHHHHHHHcCCC
Confidence 45778888888877 499999999986 44445556 578875323445442 145556666664
Q ss_pred CCeEEEEcCch-hHHHHhhcCceEe
Q 044580 141 NEFIVAVGKGE-PAAVMAEYGFKNV 164 (269)
Q Consensus 141 ~k~VlvvG~~~-~~~v~~~~Gf~~v 164 (269)
.+.++++|+.. ..+.++.+|...+
T Consensus 155 ~~~~~~iGDs~~Di~aa~~aG~~~i 179 (214)
T PRK13288 155 PEEALMVGDNHHDILAGKNAGTKTA 179 (214)
T ss_pred HHHEEEECCCHHHHHHHHHCCCeEE
Confidence 35688899863 4567899998765
No 33
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=98.07 E-value=1.2e-05 Score=74.82 Aligned_cols=68 Identities=13% Similarity=0.288 Sum_probs=53.5
Q ss_pred CccEEEEecCceeecCCccc----cchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcch
Q 044580 54 PSFGIAFDIDGVVLLGNTPI----GGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGH 129 (269)
Q Consensus 54 ~~~a~lFDIDGVL~~G~~~i----PgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~ 129 (269)
....|+||+||||+.....+ ||+.++|+.|++ .|++++++||++ ++...+.| +.+|+.---+.|+.++
T Consensus 125 ~~kvIvFDLDgTLi~~~~~v~irdPgV~EaL~~Lke----kGikLaIaTS~~---Re~v~~~L-~~lGLd~YFdvIIs~G 196 (301)
T TIGR01684 125 PPHVVVFDLDSTLITDEEPVRIRDPRIYDSLTELKK----RGCILVLWSYGD---RDHVVESM-RKVKLDRYFDIIISGG 196 (301)
T ss_pred cceEEEEecCCCCcCCCCccccCCHHHHHHHHHHHH----CCCEEEEEECCC---HHHHHHHH-HHcCCCcccCEEEECC
Confidence 56899999999999998864 999999999999 499999999986 33444566 5889873334555543
No 34
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=98.07 E-value=8.8e-06 Score=72.53 Aligned_cols=55 Identities=27% Similarity=0.384 Sum_probs=46.1
Q ss_pred EEEEecCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCC
Q 044580 57 GIAFDIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVN 119 (269)
Q Consensus 57 a~lFDIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~ 119 (269)
.|+||+||||++.+..+|++.++|++|++ .|++++++|+ ++..+....+ +.+|+.
T Consensus 1 li~~DlDGTLl~~~~~~~~~~~ai~~l~~----~G~~~vi~Tg---R~~~~~~~~~-~~lg~~ 55 (225)
T TIGR02461 1 VIFTDLDGTLLPPGYEPGPAREALEELKD----LGFPIVFVSS---KTRAEQEYYR-EELGVE 55 (225)
T ss_pred CEEEeCCCCCcCCCCCchHHHHHHHHHHH----CCCEEEEEeC---CCHHHHHHHH-HHcCCC
Confidence 37899999999988889999999999998 4999999975 5666666655 588874
No 35
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=98.06 E-value=2.3e-05 Score=78.40 Aligned_cols=92 Identities=18% Similarity=0.226 Sum_probs=64.2
Q ss_pred CCccEEEEecCceeecCCc-------------cccchHHHHHHHHhhcCCCCceEEEEeCCCCC-----CHHH---HHHH
Q 044580 53 RPSFGIAFDIDGVVLLGNT-------------PIGGSNKALKRLYQHSGDLRIPYIFLTNGGGF-----RESK---RATE 111 (269)
Q Consensus 53 ~~~~a~lFDIDGVL~~G~~-------------~iPgA~eal~~L~~~~~~~gip~iflTN~~~~-----se~~---~a~~ 111 (269)
+..+.++||.||||+.... ++||+.++|+.|++ .|++++++||.++. +.+. ++..
T Consensus 166 ~~~Kia~fD~DGTLi~t~sg~~~~~~~~d~~~l~pgV~e~L~~L~~----~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~ 241 (526)
T TIGR01663 166 GQEKIAGFDLDGTIIKTKSGKVFPKGPDDWQIIFPEIPEKLKELEA----DGFKICIFTNQGGIARGKINADDFKAKIEA 241 (526)
T ss_pred ccCcEEEEECCCCccccCCCccCCCCHHHeeecccCHHHHHHHHHH----CCCEEEEEECCcccccCcccHHHHHHHHHH
Confidence 4578999999999997431 58999999999998 49999999998874 3333 3444
Q ss_pred HHHHcCCCCCCCcEEcch---------HHHHHHHHhcC------CCeEEEEcCc
Q 044580 112 LSKLLGVNILPCQVVQGH---------SPFKQLFNRFE------NEFIVAVGKG 150 (269)
Q Consensus 112 Ls~~lGi~i~~~qVi~s~---------tp~~~L~~~~~------~k~VlvvG~~ 150 (269)
+-+.+|++++ -++.++ ..+.++.++++ ....++||+.
T Consensus 242 iL~~lgipfd--viia~~~~~~RKP~pGm~~~a~~~~~~~~~Id~~~S~~VGDa 293 (526)
T TIGR01663 242 IVAKLGVPFQ--VFIAIGAGFYRKPLTGMWDHLKEEANDGTEIQEDDCFFVGDA 293 (526)
T ss_pred HHHHcCCceE--EEEeCCCCCCCCCCHHHHHHHHHhcCcccCCCHHHeEEeCCc
Confidence 4468898764 233221 33445556663 1357788874
No 36
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=98.05 E-value=4.4e-05 Score=69.95 Aligned_cols=105 Identities=14% Similarity=0.121 Sum_probs=72.8
Q ss_pred ccEEEEecCceeec-------------CCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCC
Q 044580 55 SFGIAFDIDGVVLL-------------GNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNIL 121 (269)
Q Consensus 55 ~~a~lFDIDGVL~~-------------G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~ 121 (269)
...++||+||||.. ...++||+.++++.|++ .|++++++||.+....+..++.| ...|+.++
T Consensus 158 ~~~~~~D~dgtl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~----~g~~i~i~T~r~~~~~~~~l~~l-~~~~~~f~ 232 (300)
T PHA02530 158 PKAVIFDIDGTLAKMGGRSPYDWTKVKEDKPNPMVVELVKMYKA----AGYEIIVVSGRDGVCEEDTVEWL-RQTDIWFD 232 (300)
T ss_pred CCEEEEECCCcCcCCCCCCccchhhcccCCCChhHHHHHHHHHh----CCCEEEEEeCCChhhHHHHHHHH-HHcCCchh
Confidence 57899999999997 45789999999999998 49999999999988887777777 35552221
Q ss_pred CCcEE-------------cch-HHHHHHHHhcC---CCeEEEEcCch-hHHHHhhcCceEe
Q 044580 122 PCQVV-------------QGH-SPFKQLFNRFE---NEFIVAVGKGE-PAAVMAEYGFKNV 164 (269)
Q Consensus 122 ~~qVi-------------~s~-tp~~~L~~~~~---~k~VlvvG~~~-~~~v~~~~Gf~~v 164 (269)
.-... ... .+..+..++.. ...++++|+.. ..+.++.+|+..+
T Consensus 233 ~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~~~~~~~~~~~~vgD~~~d~~~a~~~Gi~~i 293 (300)
T PHA02530 233 DLIGRPPDMHFQREQGDKRPDDVVKEEIFWEKIAPKYDVLLAVDDRDQVVDMWRRIGLECW 293 (300)
T ss_pred hhhCCcchhhhcccCCCCCCcHHHHHHHHHHHhccCceEEEEEcCcHHHHHHHHHhCCeEE
Confidence 10000 011 22333333322 25678888763 4677899998875
No 37
>PRK11587 putative phosphatase; Provisional
Probab=98.02 E-value=5.9e-05 Score=66.10 Aligned_cols=85 Identities=19% Similarity=0.190 Sum_probs=54.5
Q ss_pred ccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcch---------HHHHHHHHhcC-
Q 044580 71 TPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGH---------SPFKQLFNRFE- 140 (269)
Q Consensus 71 ~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~---------tp~~~L~~~~~- 140 (269)
.++||+.++|+.|++ .|+++.++||++.. .....+ +.+|+.. .+.|+.+. .++....++++
T Consensus 83 ~~~pg~~e~L~~L~~----~g~~~~ivTn~~~~---~~~~~l-~~~~l~~-~~~i~~~~~~~~~KP~p~~~~~~~~~~g~ 153 (218)
T PRK11587 83 TALPGAIALLNHLNK----LGIPWAIVTSGSVP---VASARH-KAAGLPA-PEVFVTAERVKRGKPEPDAYLLGAQLLGL 153 (218)
T ss_pred eeCcCHHHHHHHHHH----cCCcEEEEcCCCch---HHHHHH-HhcCCCC-ccEEEEHHHhcCCCCCcHHHHHHHHHcCC
Confidence 356888888888887 49999999998643 223344 4677753 34555431 23333344443
Q ss_pred -CCeEEEEcCch-hHHHHhhcCceEe
Q 044580 141 -NEFIVAVGKGE-PAAVMAEYGFKNV 164 (269)
Q Consensus 141 -~k~VlvvG~~~-~~~v~~~~Gf~~v 164 (269)
...++++|+.. ..+.++.+|.+.+
T Consensus 154 ~p~~~l~igDs~~di~aA~~aG~~~i 179 (218)
T PRK11587 154 APQECVVVEDAPAGVLSGLAAGCHVI 179 (218)
T ss_pred CcccEEEEecchhhhHHHHHCCCEEE
Confidence 35688889763 4577899998764
No 38
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=98.00 E-value=3.7e-05 Score=65.96 Aligned_cols=101 Identities=19% Similarity=0.306 Sum_probs=75.4
Q ss_pred CCCccEEEEecCceeec--CCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcch
Q 044580 52 QRPSFGIAFDIDGVVLL--GNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGH 129 (269)
Q Consensus 52 ~~~~~a~lFDIDGVL~~--G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~ 129 (269)
.+..+|+++|+|.||+- ....-|...+.+..++.+ |+.++++|||. +.+++..++.+|++ -|..+.
T Consensus 25 ~~Gikgvi~DlDNTLv~wd~~~~tpe~~~W~~e~k~~----gi~v~vvSNn~----e~RV~~~~~~l~v~----fi~~A~ 92 (175)
T COG2179 25 AHGIKGVILDLDNTLVPWDNPDATPELRAWLAELKEA----GIKVVVVSNNK----ESRVARAAEKLGVP----FIYRAK 92 (175)
T ss_pred HcCCcEEEEeccCceecccCCCCCHHHHHHHHHHHhc----CCEEEEEeCCC----HHHHHhhhhhcCCc----eeeccc
Confidence 35789999999999985 456789999999999994 99999999974 45666666789987 344444
Q ss_pred HHHH----HHHHh--cCCCeEEEEcCchhHHHH--hhcCceEe
Q 044580 130 SPFK----QLFNR--FENEFIVAVGKGEPAAVM--AEYGFKNV 164 (269)
Q Consensus 130 tp~~----~L~~~--~~~k~VlvvG~~~~~~v~--~~~Gf~~v 164 (269)
.|+. .-.++ ...+.|.+||+.-..+++ ...|+..+
T Consensus 93 KP~~~~fr~Al~~m~l~~~~vvmVGDqL~TDVlggnr~G~~tI 135 (175)
T COG2179 93 KPFGRAFRRALKEMNLPPEEVVMVGDQLFTDVLGGNRAGMRTI 135 (175)
T ss_pred CccHHHHHHHHHHcCCChhHEEEEcchhhhhhhcccccCcEEE
Confidence 3333 22233 345689999998888885 56787765
No 39
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=97.98 E-value=2.1e-05 Score=66.76 Aligned_cols=106 Identities=21% Similarity=0.335 Sum_probs=64.6
Q ss_pred EEEEecCceeecCC------------ccc-cchHHHHHHHHhhcCCCCceEEEEeCCCCCCH----------HHHHHHHH
Q 044580 57 GIAFDIDGVVLLGN------------TPI-GGSNKALKRLYQHSGDLRIPYIFLTNGGGFRE----------SKRATELS 113 (269)
Q Consensus 57 a~lFDIDGVL~~G~------------~~i-PgA~eal~~L~~~~~~~gip~iflTN~~~~se----------~~~a~~Ls 113 (269)
..+||+||||+... ..+ |++.++|+.|.+ .|..++++||-+|... ..+.+.+-
T Consensus 2 ia~fD~DgTLi~~~s~~~f~~~~~D~~~~~~~v~~~L~~l~~----~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il 77 (159)
T PF08645_consen 2 IAFFDLDGTLIKTKSGKKFPKDPDDWKFFPPGVPEALRELHK----KGYKIVIVTNQSGIGRGMGEKDLENFHEKIENIL 77 (159)
T ss_dssp EEEE-SCTTTEE-STSTTS-SSTCGGEEC-TTHHHHHHHHHH----TTEEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHH
T ss_pred EEEEeCCCCccCCCCCCcCcCCHHHhhhcchhHHHHHHHHHh----cCCeEEEEeCccccccccccchHHHHHHHHHHHH
Confidence 57899999999753 235 489999999998 4999999999988765 23344444
Q ss_pred HHcCCCCCCCcEEcch---------H-HHHHHHHhcCC------CeEEEEcCc------------hhHHHHhhcCceEec
Q 044580 114 KLLGVNILPCQVVQGH---------S-PFKQLFNRFEN------EFIVAVGKG------------EPAAVMAEYGFKNVL 165 (269)
Q Consensus 114 ~~lGi~i~~~qVi~s~---------t-p~~~L~~~~~~------k~VlvvG~~------------~~~~v~~~~Gf~~v~ 165 (269)
+.+|+++ .++-+. + .+.++.+++.. +..++||.. ..++.|...|.+ ..
T Consensus 78 ~~l~ip~---~~~~a~~~d~~RKP~~GM~~~~~~~~~~~~~id~~~Sf~VGDaagr~~~~~d~s~~D~~fA~N~gi~-f~ 153 (159)
T PF08645_consen 78 KELGIPI---QVYAAPHKDPCRKPNPGMWEFALKDYNDGVEIDLANSFYVGDAAGRSKKKKDFSDSDRKFALNCGIK-FY 153 (159)
T ss_dssp HHCTS-E---EEEECGCSSTTSTTSSHHHHHHCCCTSTT--S-CCC-EEEESSCHCTB-S--S--HHHHHHHHHT---EE
T ss_pred HHcCCce---EEEecCCCCCCCCCchhHHHHHHHhccccccccccceEEEeccCCCCCcccccChhHHHHHHHcCCc-cc
Confidence 5678774 333221 1 22333445543 457888973 445678888987 45
Q ss_pred Ccccc
Q 044580 166 SIDEY 170 (269)
Q Consensus 166 t~~d~ 170 (269)
||+|+
T Consensus 154 tpe~~ 158 (159)
T PF08645_consen 154 TPEEF 158 (159)
T ss_dssp -HHHH
T ss_pred Chhhc
Confidence 66653
No 40
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=97.87 E-value=3e-05 Score=69.67 Aligned_cols=54 Identities=31% Similarity=0.356 Sum_probs=45.4
Q ss_pred EEEecCceeecCCc-cccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCC
Q 044580 58 IAFDIDGVVLLGNT-PIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVN 119 (269)
Q Consensus 58 ~lFDIDGVL~~G~~-~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~ 119 (269)
+++|+||||+++.. .++.+.++++.|++ .|++++++|. ++.....+.+ +.+|+.
T Consensus 2 i~~DlDGTll~~~~~~~~~~~~~i~~l~~----~g~~~~~~Tg---R~~~~~~~~~-~~~~~~ 56 (256)
T TIGR01486 2 IFTDLDGTLLDPHGYDWGPAKEVLERLQE----LGIPVIPCTS---KTAAEVEYLR-KELGLE 56 (256)
T ss_pred EEEcCCCCCcCCCCcCchHHHHHHHHHHH----CCCeEEEEcC---CCHHHHHHHH-HHcCCC
Confidence 78999999999887 88899999999998 4999999984 5676666656 678874
No 41
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=97.87 E-value=3.4e-05 Score=70.14 Aligned_cols=58 Identities=26% Similarity=0.227 Sum_probs=46.7
Q ss_pred CccEEEEecCceeec-CCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCC
Q 044580 54 PSFGIAFDIDGVVLL-GNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVN 119 (269)
Q Consensus 54 ~~~a~lFDIDGVL~~-G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~ 119 (269)
.++.+++||||||++ ++...+++.++|+.|++ .|++++++|+.+ .......+ +.+|+.
T Consensus 3 ~~kli~~DlDGTLl~~~~~~~~~~~~ai~~l~~----~Gi~~~iaTgR~---~~~~~~~~-~~l~l~ 61 (273)
T PRK00192 3 MKLLVFTDLDGTLLDHHTYSYEPAKPALKALKE----KGIPVIPCTSKT---AAEVEVLR-KELGLE 61 (273)
T ss_pred cceEEEEcCcccCcCCCCcCcHHHHHHHHHHHH----CCCEEEEEcCCC---HHHHHHHH-HHcCCC
Confidence 478999999999998 56688999999999998 599999999864 44444445 577764
No 42
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=97.83 E-value=0.00015 Score=66.71 Aligned_cols=84 Identities=19% Similarity=0.202 Sum_probs=52.6
Q ss_pred ccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcc------hHHHHHHHHhcC--CCeE
Q 044580 73 IGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQG------HSPFKQLFNRFE--NEFI 144 (269)
Q Consensus 73 iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s------~tp~~~L~~~~~--~k~V 144 (269)
+||+.++|+.|++ .|+++.++||+. +......| +.+|+.---+.|+.+ ..++..+.++++ ...+
T Consensus 144 ~pg~~e~L~~L~~----~gi~laIvSn~~---~~~~~~~L-~~~gl~~~F~~vi~~~~~~~k~~~~~~~l~~~~~~p~~~ 215 (273)
T PRK13225 144 FPGVADLLAQLRS----RSLCLGILSSNS---RQNIEAFL-QRQGLRSLFSVVQAGTPILSKRRALSQLVAREGWQPAAV 215 (273)
T ss_pred CCCHHHHHHHHHH----CCCeEEEEeCCC---HHHHHHHH-HHcCChhheEEEEecCCCCCCHHHHHHHHHHhCcChhHE
Confidence 4666666777766 599999999985 33344445 578874211233321 244555555543 3468
Q ss_pred EEEcCch-hHHHHhhcCceEe
Q 044580 145 VAVGKGE-PAAVMAEYGFKNV 164 (269)
Q Consensus 145 lvvG~~~-~~~v~~~~Gf~~v 164 (269)
+++|+.. ..+.++.+|+..+
T Consensus 216 l~IGDs~~Di~aA~~AG~~~I 236 (273)
T PRK13225 216 MYVGDETRDVEAARQVGLIAV 236 (273)
T ss_pred EEECCCHHHHHHHHHCCCeEE
Confidence 8899863 3567889998865
No 43
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=97.82 E-value=5.8e-05 Score=62.05 Aligned_cols=45 Identities=16% Similarity=0.212 Sum_probs=36.5
Q ss_pred cEEEEecCceeecCC-------ccccchHHHHHHHHhhcCCCCceEEEEeCCCCCC
Q 044580 56 FGIAFDIDGVVLLGN-------TPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFR 104 (269)
Q Consensus 56 ~a~lFDIDGVL~~G~-------~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~s 104 (269)
++|+|||||||...+ .+.+++.++++.|++ .|..++|+|-.+...
T Consensus 2 K~i~~DiDGTL~~~~~~~y~~~~~~~~~ie~L~~l~~----~G~~IiiaTGR~~~~ 53 (126)
T TIGR01689 2 KRLVMDLDNTITLTENGDYANVAPILAVIEKLRHYKA----LGFEIVISSSRNMRT 53 (126)
T ss_pred CEEEEeCCCCcccCCCCcccccccCHHHHHHHHHHHH----CCCEEEEECCCCchh
Confidence 689999999999743 266899999999987 499999999765433
No 44
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=97.81 E-value=0.00021 Score=64.69 Aligned_cols=86 Identities=16% Similarity=-0.046 Sum_probs=51.1
Q ss_pred cccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCC-CCCCcEEcch---------HHHHHHHHhcCC
Q 044580 72 PIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVN-ILPCQVVQGH---------SPFKQLFNRFEN 141 (269)
Q Consensus 72 ~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~-i~~~qVi~s~---------tp~~~L~~~~~~ 141 (269)
++||+.+.|+.|++ .|+++.++||+... .....| +.+|+. ...+.|+.+. .++....++++-
T Consensus 102 ~~pg~~elL~~L~~----~g~~l~I~T~~~~~---~~~~~l-~~~~l~~~~~d~i~~~~~~~~~KP~p~~~~~a~~~l~~ 173 (267)
T PRK13478 102 PIPGVLEVIAALRA----RGIKIGSTTGYTRE---MMDVVV-PLAAAQGYRPDHVVTTDDVPAGRPYPWMALKNAIELGV 173 (267)
T ss_pred CCCCHHHHHHHHHH----CCCEEEEEcCCcHH---HHHHHH-HHHhhcCCCceEEEcCCcCCCCCCChHHHHHHHHHcCC
Confidence 35666677777766 59999999997633 222333 334331 1124454431 334444556542
Q ss_pred ---CeEEEEcCch-hHHHHhhcCceEec
Q 044580 142 ---EFIVAVGKGE-PAAVMAEYGFKNVL 165 (269)
Q Consensus 142 ---k~VlvvG~~~-~~~v~~~~Gf~~v~ 165 (269)
..+++||+.. ..+.++.+|++.+.
T Consensus 174 ~~~~e~l~IGDs~~Di~aA~~aG~~~i~ 201 (267)
T PRK13478 174 YDVAACVKVDDTVPGIEEGLNAGMWTVG 201 (267)
T ss_pred CCCcceEEEcCcHHHHHHHHHCCCEEEE
Confidence 4688899753 45678999987653
No 45
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=97.80 E-value=5e-05 Score=64.31 Aligned_cols=45 Identities=18% Similarity=0.142 Sum_probs=38.2
Q ss_pred EEEEecCceeecCC------------ccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCH
Q 044580 57 GIAFDIDGVVLLGN------------TPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRE 105 (269)
Q Consensus 57 a~lFDIDGVL~~G~------------~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se 105 (269)
.|+|||||||.+.+ ...|++.++++++++ .|.+++++|..+-...
T Consensus 1 iVisDIDGTL~~sd~~~~~~~~~~~~~~~~~~~~a~~~l~~----~G~~ivy~TGRp~~~~ 57 (157)
T smart00775 1 IVISDIDGTITKSDVLGHVVPIIGKDWTHPGVAKLYRDIQN----NGYKILYLTARPIGQA 57 (157)
T ss_pred CEEEecCCCCcccccccccccccccCcCCHHHHHHHHHHHH----cCCeEEEEcCCcHHHH
Confidence 37899999999876 678999999999998 4999999998764433
No 46
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=97.79 E-value=4.1e-05 Score=66.86 Aligned_cols=56 Identities=23% Similarity=0.227 Sum_probs=43.0
Q ss_pred cEEEEecCceeecCCc-cccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCC
Q 044580 56 FGIAFDIDGVVLLGNT-PIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVN 119 (269)
Q Consensus 56 ~a~lFDIDGVL~~G~~-~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~ 119 (269)
+.|+||+||||++... .-|++.++|++|++ .|++++++|..+-.. .. .+.+.+|+.
T Consensus 2 k~v~~DlDGTLl~~~~~i~~~~~~~i~~l~~----~g~~~~~~TGR~~~~---~~-~~~~~l~~~ 58 (215)
T TIGR01487 2 KLVAIDIDGTLTEPNRMISERAIEAIRKAEK----KGIPVSLVTGNTVPF---AR-ALAVLIGTS 58 (215)
T ss_pred cEEEEecCCCcCCCCcccCHHHHHHHHHHHH----CCCEEEEEcCCcchh---HH-HHHHHhCCC
Confidence 6899999999998765 55899999999998 499999999876332 22 233566654
No 47
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=97.78 E-value=0.00026 Score=62.73 Aligned_cols=84 Identities=21% Similarity=0.161 Sum_probs=52.2
Q ss_pred ccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcch---------HHHHHHHHhcC--C
Q 044580 73 IGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGH---------SPFKQLFNRFE--N 141 (269)
Q Consensus 73 iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~---------tp~~~L~~~~~--~ 141 (269)
+||+.+.|+.|++ .|+++.++||+.. ......| +.+|+.-.-+.++.+. .++..+.++++ .
T Consensus 97 ~pg~~~~L~~L~~----~g~~l~i~Tn~~~---~~~~~~l-~~~~l~~~f~~i~~~~~~~~~KP~p~~~~~~~~~l~~~p 168 (229)
T PRK13226 97 FDGVEGMLQRLEC----AGCVWGIVTNKPE---YLARLIL-PQLGWEQRCAVLIGGDTLAERKPHPLPLLVAAERIGVAP 168 (229)
T ss_pred CCCHHHHHHHHHH----CCCeEEEECCCCH---HHHHHHH-HHcCchhcccEEEecCcCCCCCCCHHHHHHHHHHhCCCh
Confidence 5566666666665 5899999999863 3333345 5677642223333321 23555556654 4
Q ss_pred CeEEEEcCch-hHHHHhhcCceEe
Q 044580 142 EFIVAVGKGE-PAAVMAEYGFKNV 164 (269)
Q Consensus 142 k~VlvvG~~~-~~~v~~~~Gf~~v 164 (269)
+.++++|+.. ..+.++.+|++.+
T Consensus 169 ~~~l~IGDs~~Di~aA~~aG~~~i 192 (229)
T PRK13226 169 TDCVYVGDDERDILAARAAGMPSV 192 (229)
T ss_pred hhEEEeCCCHHHHHHHHHCCCcEE
Confidence 5688899863 3567899998875
No 48
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=97.78 E-value=3.7e-05 Score=69.87 Aligned_cols=60 Identities=22% Similarity=0.247 Sum_probs=47.3
Q ss_pred CCCccEEEEecCceeecCCccc-cchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCC
Q 044580 52 QRPSFGIAFDIDGVVLLGNTPI-GGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVN 119 (269)
Q Consensus 52 ~~~~~a~lFDIDGVL~~G~~~i-PgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~ 119 (269)
.++.+.|++|+||||++.+..+ +.+.++|++|++ .|+++++.|..+ .......+ +.+|++
T Consensus 4 ~~~~~lI~~DlDGTLL~~~~~i~~~~~~ai~~l~~----~Gi~~viaTGR~---~~~i~~~~-~~l~~~ 64 (271)
T PRK03669 4 LQDPLLIFTDLDGTLLDSHTYDWQPAAPWLTRLRE----AQVPVILCSSKT---AAEMLPLQ-QTLGLQ 64 (271)
T ss_pred cCCCeEEEEeCccCCcCCCCcCcHHHHHHHHHHHH----cCCeEEEEcCCC---HHHHHHHH-HHhCCC
Confidence 4578999999999999987766 679999999998 499999999654 44444444 567763
No 49
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=97.77 E-value=0.00041 Score=66.28 Aligned_cols=105 Identities=15% Similarity=0.177 Sum_probs=70.6
Q ss_pred ccEEEEecCceeecC------------CccccchHHHHHHHHhhcCCCCceEEEEeCCCCC-----CH------HHHHHH
Q 044580 55 SFGIAFDIDGVVLLG------------NTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGF-----RE------SKRATE 111 (269)
Q Consensus 55 ~~a~lFDIDGVL~~G------------~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~-----se------~~~a~~ 111 (269)
.+.++||-||||+.. -.+.||+.++|+.|++ .|++++++||.++. .+ ...+..
T Consensus 2 ~k~l~lDrDgtl~~~~~~~y~~~~~~~~~l~pGV~e~L~~Lk~----~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~ 77 (354)
T PRK05446 2 QKILFIDRDGTLIEEPPTDFQVDSLDKLAFEPGVIPALLKLQK----AGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQ 77 (354)
T ss_pred CcEEEEeCCCCccCCCCccccccCcccceECcCHHHHHHHHHh----CCCeEEEEECCccccCccccHHHHhhHHHHHHH
Confidence 568999999999985 4679999999999998 49999999997431 11 122333
Q ss_pred HHHHcCCCCCCCcEEc-------------ch-HHHHHHHHhc--CCCeEEEEcCch-hHHHHhhcCceEec
Q 044580 112 LSKLLGVNILPCQVVQ-------------GH-SPFKQLFNRF--ENEFIVAVGKGE-PAAVMAEYGFKNVL 165 (269)
Q Consensus 112 Ls~~lGi~i~~~qVi~-------------s~-tp~~~L~~~~--~~k~VlvvG~~~-~~~v~~~~Gf~~v~ 165 (269)
+-+.+|+.+ +.++. .. ..+.++.+++ ....+++||+.. ..+.++.+|.+.+.
T Consensus 78 iL~~~gl~f--d~i~i~~~~~sd~~~~rKP~p~~l~~a~~~l~v~~~~svmIGDs~sDi~aAk~aGi~~I~ 146 (354)
T PRK05446 78 IFESQGIKF--DEVLICPHFPEDNCSCRKPKTGLVEEYLAEGAIDLANSYVIGDRETDVQLAENMGIKGIR 146 (354)
T ss_pred HHHHcCCce--eeEEEeCCcCcccCCCCCCCHHHHHHHHHHcCCCcccEEEEcCCHHHHHHHHHCCCeEEE
Confidence 335778764 34331 11 2344444444 235688889753 46779999988763
No 50
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=97.77 E-value=0.00022 Score=61.60 Aligned_cols=104 Identities=14% Similarity=0.086 Sum_probs=66.8
Q ss_pred ccEEEEecCceeecCC---------------------------ccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHH
Q 044580 55 SFGIAFDIDGVVLLGN---------------------------TPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESK 107 (269)
Q Consensus 55 ~~a~lFDIDGVL~~G~---------------------------~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~ 107 (269)
.+.++||+|||||.-. .++||+.+.|+.|++ .|+++.++||+... .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pGv~elL~~Lk~----~G~~l~I~Sn~~~~---~ 74 (174)
T TIGR01685 2 PRVIVFDLDGTLWDHYMISLLGGPFKPVKQNNSIIIDKSGTEVTLIKEVRDVLQTLKD----AGTYLATASWNDVP---E 74 (174)
T ss_pred CcEEEEeCCCCCcCcccccccCCCceeccCCCCeEEeCCCCEEEEcccHHHHHHHHHH----CCCEEEEEeCCCCh---H
Confidence 3578999999988511 468999999999998 49999999998322 2
Q ss_pred HHHHHHHHcCCC---------CCCCcEEcch-----HHH----HHHHHh----cCCCeEEEEcCc-hhHHHHhhcCceEe
Q 044580 108 RATELSKLLGVN---------ILPCQVVQGH-----SPF----KQLFNR----FENEFIVAVGKG-EPAAVMAEYGFKNV 164 (269)
Q Consensus 108 ~a~~Ls~~lGi~---------i~~~qVi~s~-----tp~----~~L~~~----~~~k~VlvvG~~-~~~~v~~~~Gf~~v 164 (269)
.++.+-+.+|+. ---+.++.+. .+. +.+.+. ...+.++++|+. ...+.++.+|...+
T Consensus 75 ~~~~~L~~~~l~~~~~~~~~~~~Fd~iv~~~~~~~~kp~~~i~~~~~~~~~~gl~p~e~l~VgDs~~di~aA~~aGi~~i 154 (174)
T TIGR01685 75 WAYEILGTFEITYAGKTVPMHSLFDDRIEIYKPNKAKQLEMILQKVNKVDPSVLKPAQILFFDDRTDNVREVWGYGVTSC 154 (174)
T ss_pred HHHHHHHhCCcCCCCCcccHHHhceeeeeccCCchHHHHHHHHHHhhhcccCCCCHHHeEEEcChhHhHHHHHHhCCEEE
Confidence 333333567764 1124555432 122 222222 334578889975 34567899998876
Q ss_pred c
Q 044580 165 L 165 (269)
Q Consensus 165 ~ 165 (269)
.
T Consensus 155 ~ 155 (174)
T TIGR01685 155 Y 155 (174)
T ss_pred E
Confidence 4
No 51
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=97.77 E-value=3.7e-05 Score=67.34 Aligned_cols=58 Identities=26% Similarity=0.310 Sum_probs=44.7
Q ss_pred CccEEEEecCceeecCCccc-cchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCC
Q 044580 54 PSFGIAFDIDGVVLLGNTPI-GGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVN 119 (269)
Q Consensus 54 ~~~a~lFDIDGVL~~G~~~i-PgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~ 119 (269)
.++.|+||+||||++....+ |.+.+||++|++ .|++|++.|..+ .....+.+ +.+|++
T Consensus 2 ~~kli~~DlDGTLl~~~~~i~~~~~~al~~l~~----~G~~~~iaTGR~---~~~~~~~~-~~l~~~ 60 (230)
T PRK01158 2 KIKAIAIDIDGTITDKDRRLSLKAVEAIRKAEK----LGIPVILATGNV---LCFARAAA-KLIGTS 60 (230)
T ss_pred ceeEEEEecCCCcCCCCCccCHHHHHHHHHHHH----CCCEEEEEcCCc---hHHHHHHH-HHhCCC
Confidence 36799999999999877755 689999999998 499999999654 44433333 567764
No 52
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=97.76 E-value=0.0004 Score=61.32 Aligned_cols=85 Identities=19% Similarity=0.152 Sum_probs=57.8
Q ss_pred cccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEc-c-------h-HHHHHHHHhcCCC
Q 044580 72 PIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQ-G-------H-SPFKQLFNRFENE 142 (269)
Q Consensus 72 ~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~-s-------~-tp~~~L~~~~~~k 142 (269)
++||+.++|+.|++ .|++..++||++.. ....-| +.+|+.---+.++. . + .++..+.++++..
T Consensus 90 ~~~gv~e~L~~L~~----~g~~l~i~T~k~~~---~~~~~l-~~~gl~~~F~~i~g~~~~~~~KP~P~~l~~~~~~~~~~ 161 (220)
T COG0546 90 LFPGVKELLAALKS----AGYKLGIVTNKPER---ELDILL-KALGLADYFDVIVGGDDVPPPKPDPEPLLLLLEKLGLD 161 (220)
T ss_pred cCCCHHHHHHHHHh----CCCeEEEEeCCcHH---HHHHHH-HHhCCccccceEEcCCCCCCCCcCHHHHHHHHHHhCCC
Confidence 58888899999988 59999999998633 333333 56787643344443 1 1 4444566777655
Q ss_pred --eEEEEcCc-hhHHHHhhcCceEe
Q 044580 143 --FIVAVGKG-EPAAVMAEYGFKNV 164 (269)
Q Consensus 143 --~VlvvG~~-~~~~v~~~~Gf~~v 164 (269)
.+++||+. .....++.+|...+
T Consensus 162 ~~~~l~VGDs~~Di~aA~~Ag~~~v 186 (220)
T COG0546 162 PEEALMVGDSLNDILAAKAAGVPAV 186 (220)
T ss_pred hhheEEECCCHHHHHHHHHcCCCEE
Confidence 68999986 45677899996644
No 53
>PHA02597 30.2 hypothetical protein; Provisional
Probab=97.73 E-value=0.00031 Score=60.31 Aligned_cols=86 Identities=9% Similarity=0.107 Sum_probs=52.0
Q ss_pred ccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCC----CCCcEEcc-----h-HHHHHHHHhcC
Q 044580 71 TPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNI----LPCQVVQG-----H-SPFKQLFNRFE 140 (269)
Q Consensus 71 ~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i----~~~qVi~s-----~-tp~~~L~~~~~ 140 (269)
.++||+.++|+.|++ +.+.+++||.+..+.....+ .+|+.- -.+.++.+ . .++..+.++++
T Consensus 74 ~~~pG~~e~L~~L~~-----~~~~~i~Tn~~~~~~~~~~~----~~~l~~~f~~~f~~i~~~~~~~~kp~~~~~a~~~~~ 144 (197)
T PHA02597 74 SAYDDALDVINKLKE-----DYDFVAVTALGDSIDALLNR----QFNLNALFPGAFSEVLMCGHDESKEKLFIKAKEKYG 144 (197)
T ss_pred cCCCCHHHHHHHHHh-----cCCEEEEeCCccchhHHHHh----hCCHHHhCCCcccEEEEeccCcccHHHHHHHHHHhC
Confidence 367888888888876 35688889877655433333 333320 11344431 1 44555566666
Q ss_pred CCeEEEEcCch-hHHHHhhc--CceEec
Q 044580 141 NEFIVAVGKGE-PAAVMAEY--GFKNVL 165 (269)
Q Consensus 141 ~k~VlvvG~~~-~~~v~~~~--Gf~~v~ 165 (269)
...+++||+.. ..+.++.+ |++.+.
T Consensus 145 ~~~~v~vgDs~~di~aA~~a~~Gi~~i~ 172 (197)
T PHA02597 145 DRVVCFVDDLAHNLDAAHEALSQLPVIH 172 (197)
T ss_pred CCcEEEeCCCHHHHHHHHHHHcCCcEEE
Confidence 55688889853 35668888 988763
No 54
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=97.71 E-value=0.0005 Score=63.38 Aligned_cols=72 Identities=11% Similarity=0.056 Sum_probs=40.1
Q ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHcC-CCC-CCCcEEcc---------hHHHHHHHHhcC--CCeEEEEcCch-hHHH
Q 044580 90 LRIPYIFLTNGGGFRESKRATELSKLLG-VNI-LPCQVVQG---------HSPFKQLFNRFE--NEFIVAVGKGE-PAAV 155 (269)
Q Consensus 90 ~gip~iflTN~~~~se~~~a~~Ls~~lG-i~i-~~~qVi~s---------~tp~~~L~~~~~--~k~VlvvG~~~-~~~v 155 (269)
.|+++.++||+. .......| +.++ ... ..-.++.+ ..++....++++ ...+++||+.. ..+.
T Consensus 159 ~g~~l~IvTn~~---~~~~~~~l-~~~~~~~~~~~~~~v~~~~~~~~KP~p~~~~~a~~~~~~~p~~~l~IGDs~~Di~a 234 (286)
T PLN02779 159 AGIKVAVCSTSN---EKAVSKIV-NTLLGPERAQGLDVFAGDDVPKKKPDPDIYNLAAETLGVDPSRCVVVEDSVIGLQA 234 (286)
T ss_pred CCCeEEEEeCCC---HHHHHHHH-HHhccccccCceEEEeccccCCCCCCHHHHHHHHHHhCcChHHEEEEeCCHHhHHH
Confidence 589999999974 33333334 2332 111 11123221 134444555554 35688899763 4577
Q ss_pred HhhcCceEec
Q 044580 156 MAEYGFKNVL 165 (269)
Q Consensus 156 ~~~~Gf~~v~ 165 (269)
++.+|+..+.
T Consensus 235 A~~aG~~~i~ 244 (286)
T PLN02779 235 AKAAGMRCIV 244 (286)
T ss_pred HHHcCCEEEE
Confidence 8999988763
No 55
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=97.71 E-value=0.00049 Score=59.87 Aligned_cols=88 Identities=18% Similarity=0.207 Sum_probs=51.1
Q ss_pred cccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCC-------CcEEcc------------hHHH
Q 044580 72 PIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILP-------CQVVQG------------HSPF 132 (269)
Q Consensus 72 ~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~-------~qVi~s------------~tp~ 132 (269)
+.||+.++|+.|++ .|++++++||+. ...++.+.+.+|+.--- +.++++ ...+
T Consensus 86 ~~~g~~~~l~~l~~----~g~~~~IvS~~~----~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 157 (219)
T TIGR00338 86 LTEGAEELVKTLKE----KGYKVAVISGGF----DLFAEHVKDKLGLDAAFANRLEVEDGKLTGLVEGPIVDASYKGKTL 157 (219)
T ss_pred cCCCHHHHHHHHHH----CCCEEEEECCCc----HHHHHHHHHHcCCCceEeeEEEEECCEEEEEecCcccCCcccHHHH
Confidence 34566666666665 599999999974 23444444677874211 111111 1233
Q ss_pred HHHHHhcC--CCeEEEEcCc-hhHHHHhhcCceEecCc
Q 044580 133 KQLFNRFE--NEFIVAVGKG-EPAAVMAEYGFKNVLSI 167 (269)
Q Consensus 133 ~~L~~~~~--~k~VlvvG~~-~~~~v~~~~Gf~~v~t~ 167 (269)
+.+.++++ ...++++|.. ...+.++.+|+..+..+
T Consensus 158 ~~~~~~~~~~~~~~i~iGDs~~Di~aa~~ag~~i~~~~ 195 (219)
T TIGR00338 158 LILLRKEGISPENTVAVGDGANDLSMIKAAGLGIAFNA 195 (219)
T ss_pred HHHHHHcCCCHHHEEEEECCHHHHHHHHhCCCeEEeCC
Confidence 44444543 2357778976 34567899998765543
No 56
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=97.70 E-value=0.00011 Score=68.44 Aligned_cols=69 Identities=16% Similarity=0.191 Sum_probs=52.4
Q ss_pred CCccEEEEecCceeecCCccc----cchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcc
Q 044580 53 RPSFGIAFDIDGVVLLGNTPI----GGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQG 128 (269)
Q Consensus 53 ~~~~a~lFDIDGVL~~G~~~i----PgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s 128 (269)
...+.++||+||||+.....+ |++.++|+.|++ .|+++.++||++ ++.....| +.+|+.---+-|+.+
T Consensus 126 ~~~~~i~~D~D~TL~~~~~~v~irdp~V~EtL~eLke----kGikLaIvTNg~---Re~v~~~L-e~lgL~~yFDvII~~ 197 (303)
T PHA03398 126 EIPHVIVFDLDSTLITDEEPVRIRDPFVYDSLDELKE----RGCVLVLWSYGN---REHVVHSL-KETKLEGYFDIIICG 197 (303)
T ss_pred eeccEEEEecCCCccCCCCccccCChhHHHHHHHHHH----CCCEEEEEcCCC---hHHHHHHH-HHcCCCccccEEEEC
Confidence 356899999999999988875 999999999998 599999999985 33334455 578886222445544
Q ss_pred h
Q 044580 129 H 129 (269)
Q Consensus 129 ~ 129 (269)
.
T Consensus 198 g 198 (303)
T PHA03398 198 G 198 (303)
T ss_pred C
Confidence 3
No 57
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=97.69 E-value=3.9e-05 Score=67.08 Aligned_cols=54 Identities=28% Similarity=0.351 Sum_probs=42.3
Q ss_pred EEEecCceeecCCc-cccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCC
Q 044580 58 IAFDIDGVVLLGNT-PIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVN 119 (269)
Q Consensus 58 ~lFDIDGVL~~G~~-~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~ 119 (269)
|++||||||++.+. .++.+.++|+.|++ .|++++++||.+ .... +.+.+.+|+.
T Consensus 2 i~~DlDGTLL~~~~~~~~~~~~~l~~l~~----~gi~~~i~TgR~---~~~~-~~~~~~l~~~ 56 (221)
T TIGR02463 2 VFSDLDGTLLDSHSYDWQPAAPWLTRLQE----AGIPVILCTSKT---AAEV-EYLQKALGLT 56 (221)
T ss_pred EEEeCCCCCcCCCCCCcHHHHHHHHHHHH----CCCeEEEEcCCC---HHHH-HHHHHHcCCC
Confidence 78999999999766 66779999999998 499999999875 4333 3333577764
No 58
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=97.68 E-value=0.00013 Score=65.58 Aligned_cols=58 Identities=22% Similarity=0.205 Sum_probs=44.5
Q ss_pred CccEEEEecCceeecCCccc-cchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCC
Q 044580 54 PSFGIAFDIDGVVLLGNTPI-GGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVN 119 (269)
Q Consensus 54 ~~~a~lFDIDGVL~~G~~~i-PgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~ 119 (269)
.++.|+||+||||++.+..+ |...+||++|++ .|++|++.|..+ .......+ +.+|+.
T Consensus 2 ~~kli~~DlDGTLl~~~~~i~~~~~~ai~~l~~----~G~~~~iaTGR~---~~~~~~~~-~~l~~~ 60 (270)
T PRK10513 2 AIKLIAIDMDGTLLLPDHTISPAVKQAIAAARA----KGVNVVLTTGRP---YAGVHRYL-KELHME 60 (270)
T ss_pred ceEEEEEecCCcCcCCCCccCHHHHHHHHHHHH----CCCEEEEecCCC---hHHHHHHH-HHhCCC
Confidence 36789999999999876544 689999999998 499999998654 44444444 567764
No 59
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=97.66 E-value=0.00012 Score=62.30 Aligned_cols=101 Identities=23% Similarity=0.316 Sum_probs=72.9
Q ss_pred CCccEEEEecCceeecCCccccchHHH-----------HHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCC
Q 044580 53 RPSFGIAFDIDGVVLLGNTPIGGSNKA-----------LKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNIL 121 (269)
Q Consensus 53 ~~~~a~lFDIDGVL~~G~~~iPgA~ea-----------l~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~ 121 (269)
...+.++||+||||.+|.--+..-.|. |+.|.+ .||.+.++|...+..-+. +. +.||++
T Consensus 6 ~~IkLli~DVDGvLTDG~ly~~~~Gee~KaFnv~DG~Gik~l~~----~Gi~vAIITGr~s~ive~---Ra-~~LGI~-- 75 (170)
T COG1778 6 KNIKLLILDVDGVLTDGKLYYDENGEEIKAFNVRDGHGIKLLLK----SGIKVAIITGRDSPIVEK---RA-KDLGIK-- 75 (170)
T ss_pred hhceEEEEeccceeecCeEEEcCCCceeeeeeccCcHHHHHHHH----cCCeEEEEeCCCCHHHHH---HH-HHcCCc--
Confidence 468899999999999998554444433 556665 699999999765444443 44 578887
Q ss_pred CCcEEcch----HHHHHHHHhcCC--CeEEEEcCc-hhHHHHhhcCceEec
Q 044580 122 PCQVVQGH----SPFKQLFNRFEN--EFIVAVGKG-EPAAVMAEYGFKNVL 165 (269)
Q Consensus 122 ~~qVi~s~----tp~~~L~~~~~~--k~VlvvG~~-~~~~v~~~~Gf~~v~ 165 (269)
.++++. +++..|.+++.- ..+.++|++ ....+++..|+..++
T Consensus 76 --~~~qG~~dK~~a~~~L~~~~~l~~e~~ayiGDD~~Dlpvm~~vGls~a~ 124 (170)
T COG1778 76 --HLYQGISDKLAAFEELLKKLNLDPEEVAYVGDDLVDLPVMEKVGLSVAV 124 (170)
T ss_pred --eeeechHhHHHHHHHHHHHhCCCHHHhhhhcCccccHHHHHHcCCcccc
Confidence 677742 777788887652 356778987 457889999988763
No 60
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=97.66 E-value=0.00035 Score=62.32 Aligned_cols=77 Identities=19% Similarity=0.274 Sum_probs=45.8
Q ss_pred cchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcc--------h-HHHHHHHHhcC--CC
Q 044580 74 GGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQG--------H-SPFKQLFNRFE--NE 142 (269)
Q Consensus 74 PgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s--------~-tp~~~L~~~~~--~k 142 (269)
||+.++|+.|++ ++++.++||+... + +.+|+.---+.|+.+ + .++....++++ ..
T Consensus 116 ~gv~~~L~~L~~-----~~~l~i~Tn~~~~--------~-~~~gl~~~fd~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~ 181 (238)
T PRK10748 116 QATHDTLKQLAK-----KWPLVAITNGNAQ--------P-ELFGLGDYFEFVLRAGPHGRSKPFSDMYHLAAEKLNVPIG 181 (238)
T ss_pred ccHHHHHHHHHc-----CCCEEEEECCCch--------H-HHCCcHHhhceeEecccCCcCCCcHHHHHHHHHHcCCChh
Confidence 344445555543 6889999997632 2 355653222344432 1 34444445554 34
Q ss_pred eEEEEcCch--hHHHHhhcCceEe
Q 044580 143 FIVAVGKGE--PAAVMAEYGFKNV 164 (269)
Q Consensus 143 ~VlvvG~~~--~~~v~~~~Gf~~v 164 (269)
.+++||... ....++.+|++.+
T Consensus 182 ~~~~VGD~~~~Di~~A~~aG~~~i 205 (238)
T PRK10748 182 EILHVGDDLTTDVAGAIRCGMQAC 205 (238)
T ss_pred HEEEEcCCcHHHHHHHHHCCCeEE
Confidence 688899873 4567899998875
No 61
>PLN02954 phosphoserine phosphatase
Probab=97.63 E-value=0.00056 Score=59.69 Aligned_cols=85 Identities=13% Similarity=0.154 Sum_probs=50.1
Q ss_pred cccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCC----------CCCcEEcc------------h
Q 044580 72 PIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNI----------LPCQVVQG------------H 129 (269)
Q Consensus 72 ~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i----------~~~qVi~s------------~ 129 (269)
+.||+.++++.|++ .|+++.++||+.. ..++.+.+.+|++. +.+..+++ .
T Consensus 85 l~pg~~e~l~~l~~----~g~~~~IvS~~~~----~~i~~~l~~~gi~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K 156 (224)
T PLN02954 85 LSPGIPELVKKLRA----RGTDVYLVSGGFR----QMIAPVAAILGIPPENIFANQILFGDSGEYAGFDENEPTSRSGGK 156 (224)
T ss_pred CCccHHHHHHHHHH----CCCEEEEECCCcH----HHHHHHHHHhCCChhhEEEeEEEEcCCCcEECccCCCcccCCccH
Confidence 35777778888877 5999999999852 33444445778751 11111111 1
Q ss_pred -HHHHHHHHhcCCCeEEEEcCch-hHHHHhhcCceEe
Q 044580 130 -SPFKQLFNRFENEFIVAVGKGE-PAAVMAEYGFKNV 164 (269)
Q Consensus 130 -tp~~~L~~~~~~k~VlvvG~~~-~~~v~~~~Gf~~v 164 (269)
.++..+.++++.+.++++|... ....++..|...+
T Consensus 157 ~~~i~~~~~~~~~~~~i~iGDs~~Di~aa~~~~~~~~ 193 (224)
T PLN02954 157 AEAVQHIKKKHGYKTMVMIGDGATDLEARKPGGADLF 193 (224)
T ss_pred HHHHHHHHHHcCCCceEEEeCCHHHHHhhhcCCCCEE
Confidence 3444555555556788889863 3444666665544
No 62
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=97.58 E-value=0.00013 Score=65.42 Aligned_cols=58 Identities=22% Similarity=0.196 Sum_probs=44.6
Q ss_pred CccEEEEecCceeecCCc-cccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCC
Q 044580 54 PSFGIAFDIDGVVLLGNT-PIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVN 119 (269)
Q Consensus 54 ~~~a~lFDIDGVL~~G~~-~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~ 119 (269)
.++.|+||+||||++.+. .-|...+||++|++ .|+.|++.|..+ .......+ +.+|+.
T Consensus 2 ~~kli~~DlDGTLl~~~~~i~~~~~~ai~~~~~----~G~~~~iaTGR~---~~~~~~~~-~~l~~~ 60 (272)
T PRK10530 2 TYRVIALDLDGTLLTPKKTILPESLEALARARE----AGYKVIIVTGRH---HVAIHPFY-QALALD 60 (272)
T ss_pred CccEEEEeCCCceECCCCccCHHHHHHHHHHHH----CCCEEEEEcCCC---hHHHHHHH-HhcCCC
Confidence 368999999999998765 67889999999998 499999999654 44433334 566654
No 63
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=97.57 E-value=0.00018 Score=67.05 Aligned_cols=57 Identities=18% Similarity=0.178 Sum_probs=45.6
Q ss_pred ccEEEEecCceeecCCc-cccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCC
Q 044580 55 SFGIAFDIDGVVLLGNT-PIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVN 119 (269)
Q Consensus 55 ~~a~lFDIDGVL~~G~~-~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~ 119 (269)
++.|++|+||||++... ..+.+.++|++|++ .|+||++.|. ++..+..... +.+|+.
T Consensus 1 ~KLIftDLDGTLLd~~~~~~~~a~~aL~~Lk~----~GI~vVlaTG---Rt~~ev~~l~-~~Lgl~ 58 (302)
T PRK12702 1 MRLVLSSLDGSLLDLEFNSYGAARQALAALER----RSIPLVLYSL---RTRAQLEHLC-RQLRLE 58 (302)
T ss_pred CcEEEEeCCCCCcCCCCcCCHHHHHHHHHHHH----CCCEEEEEcC---CCHHHHHHHH-HHhCCC
Confidence 36789999999999554 67789999999998 5999999995 5566655544 678875
No 64
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=97.54 E-value=0.0001 Score=64.24 Aligned_cols=53 Identities=28% Similarity=0.385 Sum_probs=40.4
Q ss_pred EEEecCceeecCCccc-cchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCC
Q 044580 58 IAFDIDGVVLLGNTPI-GGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGV 118 (269)
Q Consensus 58 ~lFDIDGVL~~G~~~i-PgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi 118 (269)
|+||+||||++....+ |...++|++|++ .|+++++.|..+ .....+.+ +.+|+
T Consensus 1 i~~DlDGTLl~~~~~i~~~~~~al~~l~~----~Gi~~~~aTGR~---~~~~~~~~-~~l~~ 54 (225)
T TIGR01482 1 IASDIDGTLTDPNRAINESALEAIRKAES----VGIPVVLVTGNS---VQFARALA-KLIGT 54 (225)
T ss_pred CeEeccCccCCCCcccCHHHHHHHHHHHH----CCCEEEEEcCCc---hHHHHHHH-HHhCC
Confidence 5899999999987655 678899999998 599999999654 44433333 56674
No 65
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=97.52 E-value=0.00022 Score=64.42 Aligned_cols=57 Identities=25% Similarity=0.258 Sum_probs=44.4
Q ss_pred ccEEEEecCceeecCCc-cccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCC
Q 044580 55 SFGIAFDIDGVVLLGNT-PIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVN 119 (269)
Q Consensus 55 ~~a~lFDIDGVL~~G~~-~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~ 119 (269)
++.|+||+||||+..+. .-+.+.+||++|++ .|++|++.|.. +.......+ +.+|+.
T Consensus 2 ~kli~~DlDGTLl~~~~~i~~~~~~ai~~l~~----~G~~~~iaTGR---~~~~~~~~~-~~l~~~ 59 (272)
T PRK15126 2 ARLAAFDMDGTLLMPDHHLGEKTLSTLARLRE----RDITLTFATGR---HVLEMQHIL-GALSLD 59 (272)
T ss_pred ccEEEEeCCCcCcCCCCcCCHHHHHHHHHHHH----CCCEEEEECCC---CHHHHHHHH-HHcCCC
Confidence 57899999999998655 56779999999998 49999999865 454444444 567764
No 66
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=97.51 E-value=0.00011 Score=65.87 Aligned_cols=55 Identities=27% Similarity=0.349 Sum_probs=42.8
Q ss_pred EEEEecCceeecCCccc-cchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCC
Q 044580 57 GIAFDIDGVVLLGNTPI-GGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVN 119 (269)
Q Consensus 57 a~lFDIDGVL~~G~~~i-PgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~ 119 (269)
.|+||+||||+..+..+ +.+.++|++|++ .|+.+++.|+.+ .......+ +.+|+.
T Consensus 1 li~~DlDGTLl~~~~~i~~~~~~~i~~l~~----~G~~~~iaTGR~---~~~~~~~~-~~~~~~ 56 (256)
T TIGR00099 1 LIFIDLDGTLLNDDHTISPSTKEALAKLRE----KGIKVVLATGRP---YKEVKNIL-KELGLD 56 (256)
T ss_pred CEEEeCCCCCCCCCCccCHHHHHHHHHHHH----CCCeEEEEeCCC---HHHHHHHH-HHcCCC
Confidence 37899999999976644 789999999998 499999999875 44444444 567764
No 67
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=97.43 E-value=0.00072 Score=63.22 Aligned_cols=100 Identities=7% Similarity=-0.007 Sum_probs=65.4
Q ss_pred CccEEEEecCceeecCC------------ccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHH----cC
Q 044580 54 PSFGIAFDIDGVVLLGN------------TPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKL----LG 117 (269)
Q Consensus 54 ~~~a~lFDIDGVL~~G~------------~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~----lG 117 (269)
..++|++|+|+|||.|. .+.||..++|+.|++ .|+.+.++|||. ++...+.| +. +|
T Consensus 2 ~~k~~v~DlDnTlw~gv~~e~g~~~i~~~~~~~~~~e~L~~L~~----~Gi~lai~S~n~---~~~a~~~l-~~~~~~~~ 73 (320)
T TIGR01686 2 ALKVLVLDLDNTLWGGVLGEDGIDNLNLSPLHKTLQEKIKTLKK----QGFLLALASKND---EDDAKKVF-ERRKDFIL 73 (320)
T ss_pred CeEEEEEcCCCCCCCCEEccCCccccccCccHHHHHHHHHHHHh----CCCEEEEEcCCC---HHHHHHHH-HhCccccC
Confidence 57899999999999884 356899999999998 599999999985 33333344 45 55
Q ss_pred CCCCCCcEEc---ch-HHHHHHHHhcC--CCeEEEEcCchh-HHHHhhcCc
Q 044580 118 VNILPCQVVQ---GH-SPFKQLFNRFE--NEFIVAVGKGEP-AAVMAEYGF 161 (269)
Q Consensus 118 i~i~~~qVi~---s~-tp~~~L~~~~~--~k~VlvvG~~~~-~~v~~~~Gf 161 (269)
+.-.-.-+.. +. ..+..+.++.+ ...++++|+... ...++..+-
T Consensus 74 ~~~~f~~~~~~~~pk~~~i~~~~~~l~i~~~~~vfidD~~~d~~~~~~~lp 124 (320)
T TIGR01686 74 QAEDFDARSINWGPKSESLRKIAKKLNLGTDSFLFIDDNPAERANVKITLP 124 (320)
T ss_pred cHHHeeEEEEecCchHHHHHHHHHHhCCCcCcEEEECCCHHHHHHHHHHCC
Confidence 5411112221 22 45555666553 346778888643 344555444
No 68
>PRK10976 putative hydrolase; Provisional
Probab=97.40 E-value=0.00021 Score=64.28 Aligned_cols=57 Identities=21% Similarity=0.183 Sum_probs=44.0
Q ss_pred ccEEEEecCceeecCCc-cccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCC
Q 044580 55 SFGIAFDIDGVVLLGNT-PIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVN 119 (269)
Q Consensus 55 ~~a~lFDIDGVL~~G~~-~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~ 119 (269)
++.|++|+||||++.+. .-|.+.+||++|++ .|++|++.|..+ .......+ +.+|++
T Consensus 2 ikli~~DlDGTLl~~~~~is~~~~~ai~~l~~----~G~~~~iaTGR~---~~~~~~~~-~~l~~~ 59 (266)
T PRK10976 2 YQVVASDLDGTLLSPDHTLSPYAKETLKLLTA----RGIHFVFATGRH---HVDVGQIR-DNLEIK 59 (266)
T ss_pred ceEEEEeCCCCCcCCCCcCCHHHHHHHHHHHH----CCCEEEEEcCCC---hHHHHHHH-HhcCCC
Confidence 57899999999998765 55779999999998 499999999654 44444334 567764
No 69
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=97.40 E-value=0.00025 Score=63.81 Aligned_cols=58 Identities=26% Similarity=0.278 Sum_probs=44.8
Q ss_pred CccEEEEecCceeecCCc-cccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCC
Q 044580 54 PSFGIAFDIDGVVLLGNT-PIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVN 119 (269)
Q Consensus 54 ~~~a~lFDIDGVL~~G~~-~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~ 119 (269)
.++.++||+||||.+.+. .-+...++|+++++ .|+++++.|.++- ......+ +.+|+.
T Consensus 2 ~~kli~~DlDGTLl~~~~~i~~~~~~al~~~~~----~g~~v~iaTGR~~---~~~~~~~-~~l~~~ 60 (264)
T COG0561 2 MIKLLAFDLDGTLLDSNKTISPETKEALARLRE----KGVKVVLATGRPL---PDVLSIL-EELGLD 60 (264)
T ss_pred CeeEEEEcCCCCccCCCCccCHHHHHHHHHHHH----CCCEEEEECCCCh---HHHHHHH-HHcCCC
Confidence 468999999999999877 55679999999988 4999999997653 3333333 566765
No 70
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=97.36 E-value=0.00057 Score=61.34 Aligned_cols=68 Identities=19% Similarity=0.195 Sum_probs=55.4
Q ss_pred CCccEEEEecCceeecC---------------------------CccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCH
Q 044580 53 RPSFGIAFDIDGVVLLG---------------------------NTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRE 105 (269)
Q Consensus 53 ~~~~a~lFDIDGVL~~G---------------------------~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se 105 (269)
....+++||||+|++.. ..+||||.++++.+++ .|+.++||||.....+
T Consensus 70 ~~~~avv~DIDeTvLsn~~y~~~~~~~~~~~~~~~w~~wv~~~~~~aip~a~~l~~~~~~----~G~~V~~iT~R~~~~r 145 (229)
T PF03767_consen 70 DKPPAVVFDIDETVLSNSPYYAYLIFGGESFSPEDWDEWVASGKAPAIPGALELYNYARS----RGVKVFFITGRPESQR 145 (229)
T ss_dssp TSEEEEEEESBTTTEEHHHHHHHHHHHTHHH-CCHHHHHHHCTGGEEETTHHHHHHHHHH----TTEEEEEEEEEETTCH
T ss_pred CCCcEEEEECCcccccCHHHHHHHhhccCCCChHHHHHHHhcccCcccHHHHHHHHHHHH----CCCeEEEEecCCchhH
Confidence 46789999999997531 2589999999999999 5999999999988888
Q ss_pred HHHHHHHHHHcCCCCCCCcEE
Q 044580 106 SKRATELSKLLGVNILPCQVV 126 (269)
Q Consensus 106 ~~~a~~Ls~~lGi~i~~~qVi 126 (269)
+.-.+-| +..|++- .++++
T Consensus 146 ~~T~~nL-~~~G~~~-~~~l~ 164 (229)
T PF03767_consen 146 EATEKNL-KKAGFPG-WDHLI 164 (229)
T ss_dssp HHHHHHH-HHHTTST-BSCGE
T ss_pred HHHHHHH-HHcCCCc-cchhc
Confidence 8888888 5899763 24444
No 71
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=97.30 E-value=0.00047 Score=59.69 Aligned_cols=54 Identities=30% Similarity=0.317 Sum_probs=41.5
Q ss_pred EEEecCceeecCC-ccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCC
Q 044580 58 IAFDIDGVVLLGN-TPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVN 119 (269)
Q Consensus 58 ~lFDIDGVL~~G~-~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~ 119 (269)
|+|||||||++.+ .+-|...+||+.|++ .|+++++.|.. +.... .++.+.+++.
T Consensus 1 i~~DlDGTLl~~~~~i~~~~~~al~~l~~----~g~~~~i~TGR---~~~~~-~~~~~~~~~~ 55 (254)
T PF08282_consen 1 IFSDLDGTLLNSDGKISPETIEALKELQE----KGIKLVIATGR---SYSSI-KRLLKELGID 55 (254)
T ss_dssp EEEECCTTTCSTTSSSCHHHHHHHHHHHH----TTCEEEEECSS---THHHH-HHHHHHTTHC
T ss_pred cEEEECCceecCCCeeCHHHHHHHHhhcc----cceEEEEEccC---ccccc-ccccccccch
Confidence 6899999998844 456779999999998 49999999964 55554 4444577765
No 72
>PLN02887 hydrolase family protein
Probab=97.29 E-value=0.00072 Score=68.51 Aligned_cols=59 Identities=20% Similarity=0.176 Sum_probs=45.9
Q ss_pred CCccEEEEecCceeecCCc-cccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCC
Q 044580 53 RPSFGIAFDIDGVVLLGNT-PIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVN 119 (269)
Q Consensus 53 ~~~~a~lFDIDGVL~~G~~-~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~ 119 (269)
++++.|+|||||||++.+. .-+...+||++|++ .|+.|++.|.. +.......+ +.+|+.
T Consensus 306 ~~iKLIa~DLDGTLLn~d~~Is~~t~eAI~kl~e----kGi~~vIATGR---~~~~i~~~l-~~L~l~ 365 (580)
T PLN02887 306 PKFSYIFCDMDGTLLNSKSQISETNAKALKEALS----RGVKVVIATGK---ARPAVIDIL-KMVDLA 365 (580)
T ss_pred cCccEEEEeCCCCCCCCCCccCHHHHHHHHHHHH----CCCeEEEEcCC---CHHHHHHHH-HHhCcc
Confidence 4689999999999998765 56789999999998 49999999965 444444444 466653
No 73
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=97.27 E-value=0.00014 Score=61.63 Aligned_cols=120 Identities=19% Similarity=0.279 Sum_probs=62.3
Q ss_pred CccEEEEecCceeecCCccccchHHHHHHHHhhcCCCCceE--EEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEc----
Q 044580 54 PSFGIAFDIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPY--IFLTNGGGFRESKRATELSKLLGVNILPCQVVQ---- 127 (269)
Q Consensus 54 ~~~a~lFDIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~--iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~---- 127 (269)
++++++||+||||++.... ..++++.+-++ .|+++ -.+....|.+..+..+.+.+..|.+.+++++..
T Consensus 4 ~~~~viFD~DGTLiDs~~~---~~~a~~~~~~~---~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (188)
T PRK10725 4 RYAGLIFDMDGTILDTEPT---HRKAWREVLGR---YGLQFDEQAMVALNGSPTWRIAQAIIELNQADLDPHALAREKTE 77 (188)
T ss_pred cceEEEEcCCCcCccCHHH---HHHHHHHHHHH---cCCCCCHHHHHHhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 4789999999999998654 34444444442 34442 111122334555555555444555443322211
Q ss_pred --------------chHHHHHHHHhcCCCeEEEEcCch--hHHHHhhcC----ceEecCccccccccccCCCCc
Q 044580 128 --------------GHSPFKQLFNRFENEFIVAVGKGE--PAAVMAEYG----FKNVLSIDEYASYFDGIDPLA 181 (269)
Q Consensus 128 --------------s~tp~~~L~~~~~~k~VlvvG~~~--~~~v~~~~G----f~~v~t~~d~~~~~p~ldp~~ 181 (269)
....+.+|.++ .+..++.|+.. ....++..| |..+++.+|....+|..+++.
T Consensus 78 ~~~~~~~~~~~~~~~~e~L~~L~~~--~~l~I~T~~~~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~p~~~~ 149 (188)
T PRK10725 78 AVKSMLLDSVEPLPLIEVVKAWHGR--RPMAVGTGSESAIAEALLAHLGLRRYFDAVVAADDVQHHKPAPDTFL 149 (188)
T ss_pred HHHHHHhccCCCccHHHHHHHHHhC--CCEEEEcCCchHHHHHHHHhCCcHhHceEEEehhhccCCCCChHHHH
Confidence 00112222211 12233333321 245578888 577888888887777777744
No 74
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=97.24 E-value=0.0017 Score=52.91 Aligned_cols=89 Identities=21% Similarity=0.378 Sum_probs=65.2
Q ss_pred cCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcch---------HHHHHHHHh
Q 044580 68 LGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGH---------SPFKQLFNR 138 (269)
Q Consensus 68 ~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~---------tp~~~L~~~ 138 (269)
....+.||+.++|+.|++ .|++++++||+. .......| +.+|+.--.+.++.+. ..++.+.++
T Consensus 74 ~~~~~~~~~~~~L~~l~~----~~~~~~i~Sn~~---~~~~~~~l-~~~~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~ 145 (176)
T PF13419_consen 74 SKLQPYPGVRELLERLKA----KGIPLVIVSNGS---RERIERVL-ERLGLDDYFDEIISSDDVGSRKPDPDAYRRALEK 145 (176)
T ss_dssp GGEEESTTHHHHHHHHHH----TTSEEEEEESSE---HHHHHHHH-HHTTHGGGCSEEEEGGGSSSSTTSHHHHHHHHHH
T ss_pred hccchhhhhhhhhhhccc----ccceeEEeecCC---cccccccc-cccccccccccccccchhhhhhhHHHHHHHHHHH
Confidence 556899999999999997 499999999984 44445556 5788773356777642 345556666
Q ss_pred c--CCCeEEEEcCch-hHHHHhhcCceEe
Q 044580 139 F--ENEFIVAVGKGE-PAAVMAEYGFKNV 164 (269)
Q Consensus 139 ~--~~k~VlvvG~~~-~~~v~~~~Gf~~v 164 (269)
+ +.+.+++||+.. ..+.++.+|+..+
T Consensus 146 ~~~~p~~~~~vgD~~~d~~~A~~~G~~~i 174 (176)
T PF13419_consen 146 LGIPPEEILFVGDSPSDVEAAKEAGIKTI 174 (176)
T ss_dssp HTSSGGGEEEEESSHHHHHHHHHTTSEEE
T ss_pred cCCCcceEEEEeCCHHHHHHHHHcCCeEE
Confidence 5 345788899864 3567899998865
No 75
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=97.23 E-value=0.0022 Score=53.26 Aligned_cols=56 Identities=20% Similarity=0.241 Sum_probs=42.6
Q ss_pred ccEEEEecCceeecCC---------------------------ccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHH
Q 044580 55 SFGIAFDIDGVVLLGN---------------------------TPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESK 107 (269)
Q Consensus 55 ~~a~lFDIDGVL~~G~---------------------------~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~ 107 (269)
...+++|+||||++.. .+.||+.|+|+.|++ ++++.++||+.. +
T Consensus 2 k~~lvldld~tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~pG~~e~L~~L~~-----~~~l~I~Ts~~~----~ 72 (148)
T smart00577 2 KKTLVLDLDETLVHSTHRSFKEWTNRDFIVPVLIDGHPHGVYVKKRPGVDEFLKRASE-----LFELVVFTAGLR----M 72 (148)
T ss_pred CcEEEEeCCCCeECCCCCcCCCCCccceEEEEEeCCceEEEEEEECCCHHHHHHHHHh-----ccEEEEEeCCcH----H
Confidence 3578999999999862 348999999999985 799999999852 3
Q ss_pred HHHHHHHHcCCC
Q 044580 108 RATELSKLLGVN 119 (269)
Q Consensus 108 ~a~~Ls~~lGi~ 119 (269)
+++.+-+.+|+.
T Consensus 73 ~~~~il~~l~~~ 84 (148)
T smart00577 73 YADPVLDLLDPK 84 (148)
T ss_pred HHHHHHHHhCcC
Confidence 444433567763
No 76
>PTZ00174 phosphomannomutase; Provisional
Probab=97.22 E-value=0.0005 Score=61.81 Aligned_cols=53 Identities=15% Similarity=0.112 Sum_probs=42.5
Q ss_pred CCccEEEEecCceeecCCc-cccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHH
Q 044580 53 RPSFGIAFDIDGVVLLGNT-PIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATEL 112 (269)
Q Consensus 53 ~~~~a~lFDIDGVL~~G~~-~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~L 112 (269)
++++.|+||+||||++.+. .-|...+||+++++ .|+.|++.|.. +.....+.|
T Consensus 3 ~~~klia~DlDGTLL~~~~~is~~~~~ai~~l~~----~Gi~~viaTGR---~~~~i~~~l 56 (247)
T PTZ00174 3 MKKTILLFDVDGTLTKPRNPITQEMKDTLAKLKS----KGFKIGVVGGS---DYPKIKEQL 56 (247)
T ss_pred CCCeEEEEECcCCCcCCCCCCCHHHHHHHHHHHH----CCCEEEEEcCC---CHHHHHHHH
Confidence 4578999999999999876 55778899999998 59999999964 454555444
No 77
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=97.14 E-value=0.00065 Score=60.30 Aligned_cols=30 Identities=23% Similarity=0.264 Sum_probs=24.7
Q ss_pred HHHHhhcC----ceEecCccccccccccCCCCcc
Q 044580 153 AAVMAEYG----FKNVLSIDEYASYFDGIDPLAQ 182 (269)
Q Consensus 153 ~~v~~~~G----f~~v~t~~d~~~~~p~ldp~~~ 182 (269)
...+..+| |..+++.+|+...+|.+|+|..
T Consensus 117 ~~~L~~~gl~~~f~~~v~~~dv~~~KP~Pd~yL~ 150 (221)
T COG0637 117 ERVLARLGLLDYFDVIVTADDVARGKPAPDIYLL 150 (221)
T ss_pred HHHHHHccChhhcchhccHHHHhcCCCCCHHHHH
Confidence 45677888 7788899999999999999764
No 78
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=97.14 E-value=0.0013 Score=60.65 Aligned_cols=68 Identities=22% Similarity=0.286 Sum_probs=53.7
Q ss_pred CccEEEEecCceee----------cC------------------CccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCH
Q 044580 54 PSFGIAFDIDGVVL----------LG------------------NTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRE 105 (269)
Q Consensus 54 ~~~a~lFDIDGVL~----------~G------------------~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se 105 (269)
..++++||||+|+. .| ..++|++.+.++.+++ .|+.++||||.....+
T Consensus 100 ~~dA~V~DIDET~LsN~pY~~~~~~g~e~~~~~~w~~~Wv~~~~ApAlp~al~ly~~l~~----~G~kIf~VSgR~e~~r 175 (275)
T TIGR01680 100 EKDTFLFNIDGTALSNIPYYKKHGYGSEKFDSELYDEEFVNKGEAPALPETLKNYNKLVS----LGFKIIFLSGRLKDKQ 175 (275)
T ss_pred CCCEEEEECccccccCHHHHHHhcCCCCcCChhhhhHHHHhcccCCCChHHHHHHHHHHH----CCCEEEEEeCCchhHH
Confidence 46899999999988 11 2369999999999998 5999999999887667
Q ss_pred HHHHHHHHHHcCCCCCCCcEEc
Q 044580 106 SKRATELSKLLGVNILPCQVVQ 127 (269)
Q Consensus 106 ~~~a~~Ls~~lGi~i~~~qVi~ 127 (269)
+.-.+-| ++.|++. .+.+++
T Consensus 176 ~aT~~NL-~kaGy~~-~~~LiL 195 (275)
T TIGR01680 176 AVTEANL-KKAGYHT-WEKLIL 195 (275)
T ss_pred HHHHHHH-HHcCCCC-cceeee
Confidence 7777778 4789873 345554
No 79
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=97.14 E-value=0.0012 Score=67.88 Aligned_cols=64 Identities=20% Similarity=0.227 Sum_probs=48.3
Q ss_pred cccCCCCccEEEEecCceeecCCc-cccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCC
Q 044580 48 SSQSQRPSFGIAFDIDGVVLLGNT-PIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVN 119 (269)
Q Consensus 48 ~~~~~~~~~a~lFDIDGVL~~G~~-~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~ 119 (269)
.+++-+..+.|++|+||||++.+. ..+.+.+||++|++ .|++|++.|..+ ...... +.+.+|++
T Consensus 409 ~~~~~~~~KLIfsDLDGTLLd~d~~i~~~t~eAL~~L~e----kGI~~VIATGRs---~~~i~~-l~~~Lgl~ 473 (694)
T PRK14502 409 LPSSGQFKKIVYTDLDGTLLNPLTYSYSTALDALRLLKD----KELPLVFCSAKT---MGEQDL-YRNELGIK 473 (694)
T ss_pred CCCcCceeeEEEEECcCCCcCCCCccCHHHHHHHHHHHH----cCCeEEEEeCCC---HHHHHH-HHHHcCCC
Confidence 445556788999999999999654 56788999999998 499999999654 444433 33577764
No 80
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=97.12 E-value=0.0061 Score=52.31 Aligned_cols=80 Identities=16% Similarity=0.156 Sum_probs=45.1
Q ss_pred ccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCC--C------CCCcEEcc-h----HHHHHHHHhc
Q 044580 73 IGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVN--I------LPCQVVQG-H----SPFKQLFNRF 139 (269)
Q Consensus 73 iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~--i------~~~qVi~s-~----tp~~~L~~~~ 139 (269)
.||+.++|+.|++ . ++++++||+.. ..++.+-+.+|+. + +.+.++++ . .+.....+++
T Consensus 70 ~pg~~e~L~~L~~----~-~~~~IvS~~~~----~~~~~~l~~~gl~~~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~~~ 140 (205)
T PRK13582 70 LPGAVEFLDWLRE----R-FQVVILSDTFY----EFAGPLMRQLGWPTLFCHSLEVDEDGMITGYDLRQPDGKRQAVKAL 140 (205)
T ss_pred CCCHHHHHHHHHh----c-CCEEEEeCCcH----HHHHHHHHHcCCchhhcceEEECCCCeEECccccccchHHHHHHHH
Confidence 5888899999887 4 89999999853 2333333567764 1 11222221 1 1211222221
Q ss_pred --CCCeEEEEcCch-hHHHHhhcCc
Q 044580 140 --ENEFIVAVGKGE-PAAVMAEYGF 161 (269)
Q Consensus 140 --~~k~VlvvG~~~-~~~v~~~~Gf 161 (269)
....++++|++. ....++.+|.
T Consensus 141 ~~~~~~~v~iGDs~~D~~~~~aa~~ 165 (205)
T PRK13582 141 KSLGYRVIAAGDSYNDTTMLGEADA 165 (205)
T ss_pred HHhCCeEEEEeCCHHHHHHHHhCCC
Confidence 235678889863 3456777774
No 81
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=97.11 E-value=0.0015 Score=58.85 Aligned_cols=69 Identities=14% Similarity=0.108 Sum_probs=53.4
Q ss_pred CCccEEEEecCceeecC---------------------------CccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCH
Q 044580 53 RPSFGIAFDIDGVVLLG---------------------------NTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRE 105 (269)
Q Consensus 53 ~~~~a~lFDIDGVL~~G---------------------------~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se 105 (269)
....+++||||-|++.. ..++|++.++++.|++ .|+.++|+||.....+
T Consensus 75 dg~~A~V~DIDET~LsN~py~~~~~~g~~~~~~~~~~~wv~~~~apaip~al~l~~~l~~----~G~~Vf~lTGR~e~~r 150 (229)
T TIGR01675 75 DGMDAWIFDVDDTLLSNIPYYKKHGYGTEKTDPTAFWLWLGKGAAPALPEGLKLYQKIIE----LGIKIFLLSGRWEELR 150 (229)
T ss_pred CCCcEEEEccccccccCHHHHHHhccCCCcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHH----CCCEEEEEcCCChHHH
Confidence 46799999999887641 1479999999999998 5999999999876666
Q ss_pred HHHHHHHHHHcCCCCCCCcEEc
Q 044580 106 SKRATELSKLLGVNILPCQVVQ 127 (269)
Q Consensus 106 ~~~a~~Ls~~lGi~i~~~qVi~ 127 (269)
+.-.+-| +..|++. .+.+++
T Consensus 151 ~~T~~nL-~~~G~~~-~~~LiL 170 (229)
T TIGR01675 151 NATLDNL-INAGFTG-WKHLIL 170 (229)
T ss_pred HHHHHHH-HHcCCCC-cCeeee
Confidence 6677788 4789873 244443
No 82
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=97.08 E-value=0.0037 Score=58.93 Aligned_cols=86 Identities=16% Similarity=0.193 Sum_probs=54.8
Q ss_pred cccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCC-------CCcEE---------cc---hHHH
Q 044580 72 PIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNIL-------PCQVV---------QG---HSPF 132 (269)
Q Consensus 72 ~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~-------~~qVi---------~s---~tp~ 132 (269)
+.||+.+.++.|++ .|+++.++|++...- ++.+.+.+|+.-- .+..+ .+ ...+
T Consensus 182 l~pGa~elL~~Lk~----~G~~~aIvSgg~~~~----~~~l~~~Lgld~~~an~lei~dg~ltg~v~g~iv~~k~K~~~L 253 (322)
T PRK11133 182 LMPGLTELVLKLQA----LGWKVAIASGGFTYF----ADYLRDKLRLDAAVANELEIMDGKLTGNVLGDIVDAQYKADTL 253 (322)
T ss_pred CChhHHHHHHHHHH----cCCEEEEEECCcchh----HHHHHHHcCCCeEEEeEEEEECCEEEeEecCccCCcccHHHHH
Confidence 35677777777776 599999999986432 3444456776310 01111 11 1456
Q ss_pred HHHHHhcC--CCeEEEEcCc-hhHHHHhhcCceEec
Q 044580 133 KQLFNRFE--NEFIVAVGKG-EPAAVMAEYGFKNVL 165 (269)
Q Consensus 133 ~~L~~~~~--~k~VlvvG~~-~~~~v~~~~Gf~~v~ 165 (269)
+.+.++++ ...++++|++ .....++.+|+..+.
T Consensus 254 ~~la~~lgi~~~qtIaVGDg~NDl~m~~~AGlgiA~ 289 (322)
T PRK11133 254 TRLAQEYEIPLAQTVAIGDGANDLPMIKAAGLGIAY 289 (322)
T ss_pred HHHHHHcCCChhhEEEEECCHHHHHHHHHCCCeEEe
Confidence 66666664 3468888987 456778999988764
No 83
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=97.02 E-value=0.0045 Score=56.31 Aligned_cols=90 Identities=14% Similarity=0.244 Sum_probs=63.9
Q ss_pred CccEEEEecCceeecCC---------------------------ccccchHHHHHHHHhhcCCCCceEEEEeCCCCCC-H
Q 044580 54 PSFGIAFDIDGVVLLGN---------------------------TPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFR-E 105 (269)
Q Consensus 54 ~~~a~lFDIDGVL~~G~---------------------------~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~s-e 105 (269)
+..+|+.|||=|+++.. .++|||.|+++....+ |..++|+||..... .
T Consensus 78 K~~aVvlDlDETvLdNs~Yqgy~v~nnk~f~pe~Wd~wV~a~~sk~vpGA~eFl~Yvn~~----Gg~ifyiSNR~~~~~~ 153 (274)
T COG2503 78 KKKAVVLDLDETVLDNSAYQGYQVLNNKGFTPETWDKWVQAKKSKAVPGAVEFLNYVNSN----GGKIFYISNRDQENEK 153 (274)
T ss_pred CCceEEEecchHhhcCccccchhhhcCCCCCccchHHHHhhcccccCccHHHHHHHHHhc----CcEEEEEeccchhccc
Confidence 44599999999988632 5899999999999985 99999999987655 3
Q ss_pred HHHHHHHHHHcCCCCC-CCcEEc-----chHHHHHHHHhcCCCeEEEEcC
Q 044580 106 SKRATELSKLLGVNIL-PCQVVQ-----GHSPFKQLFNRFENEFIVAVGK 149 (269)
Q Consensus 106 ~~~a~~Ls~~lGi~i~-~~qVi~-----s~tp~~~L~~~~~~k~VlvvG~ 149 (269)
..-.+-| +++|++.. .+.++. +...-+..+++ .-+.|+.+|+
T Consensus 154 ~~T~~nL-k~~g~~~~~~~~~llkk~~k~Ke~R~~~v~k-~~~iVm~vGD 201 (274)
T COG2503 154 DGTIENL-KSEGLPQVLESHLLLKKDKKSKEVRRQAVEK-DYKIVMLVGD 201 (274)
T ss_pred chhHHHH-HHcCcccccccceEEeeCCCcHHHHHHHHhh-ccceeeEecC
Confidence 4456677 58899743 455554 22333333333 2356888886
No 84
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=96.97 E-value=0.001 Score=57.31 Aligned_cols=40 Identities=28% Similarity=0.403 Sum_probs=34.7
Q ss_pred EEEecCceeecCC--ccccchHHHHHHHHhhcCCCCceEEEEeCCC
Q 044580 58 IAFDIDGVVLLGN--TPIGGSNKALKRLYQHSGDLRIPYIFLTNGG 101 (269)
Q Consensus 58 ~lFDIDGVL~~G~--~~iPgA~eal~~L~~~~~~~gip~iflTN~~ 101 (269)
|+||+||||...+ .+-|.+.++|+.|.+ .|++++++|..+
T Consensus 2 i~~D~DgTL~~~~~~~~~~~~~~~l~~l~~----~g~~~~i~TGR~ 43 (204)
T TIGR01484 2 LFFDLDGTLLDPNAHELSPETIEALERLRE----AGVKVVLVTGRS 43 (204)
T ss_pred EEEeCcCCCcCCCCCcCCHHHHHHHHHHHH----CCCEEEEECCCC
Confidence 7899999999764 567889999999998 489999999765
No 85
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=96.88 E-value=0.0015 Score=57.85 Aligned_cols=61 Identities=13% Similarity=0.077 Sum_probs=45.6
Q ss_pred EEEEecCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEc
Q 044580 57 GIAFDIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQ 127 (269)
Q Consensus 57 a~lFDIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~ 127 (269)
.+++|+||||+..+..++...++++ +++ .|++|+++|. ++..+..+.+ +.+++. .++-++.
T Consensus 1 li~~DlDgTLl~~~~~~~~~~~~~~-~~~----~gi~~viaTG---R~~~~v~~~~-~~l~l~-~~~~~I~ 61 (236)
T TIGR02471 1 LIITDLDNTLLGDDEGLASFVELLR-GSG----DAVGFGIATG---RSVESAKSRY-AKLNLP-SPDVLIA 61 (236)
T ss_pred CeEEeccccccCCHHHHHHHHHHHH-hcC----CCceEEEEeC---CCHHHHHHHH-HhCCCC-CCCEEEE
Confidence 3789999999998777887777776 454 5999999995 5677777777 577775 3444554
No 86
>PLN02423 phosphomannomutase
Probab=96.88 E-value=0.0015 Score=58.94 Aligned_cols=51 Identities=18% Similarity=0.113 Sum_probs=37.8
Q ss_pred Ccc-EEEEecCceeecCCccc-cchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHH
Q 044580 54 PSF-GIAFDIDGVVLLGNTPI-GGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATEL 112 (269)
Q Consensus 54 ~~~-a~lFDIDGVL~~G~~~i-PgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~L 112 (269)
+++ .|+|||||||++++..+ |...++|++|++ ++.|++.|.. .-....+.+
T Consensus 5 ~~~~i~~~D~DGTLl~~~~~i~~~~~~ai~~l~~-----~i~fviaTGR---~~~~~~~~~ 57 (245)
T PLN02423 5 KPGVIALFDVDGTLTAPRKEATPEMLEFMKELRK-----VVTVGVVGGS---DLSKISEQL 57 (245)
T ss_pred ccceEEEEeccCCCcCCCCcCCHHHHHHHHHHHh-----CCEEEEECCc---CHHHHHHHh
Confidence 344 55599999999988766 467899999996 5999999965 344444444
No 87
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=96.80 E-value=0.0012 Score=55.49 Aligned_cols=60 Identities=25% Similarity=0.281 Sum_probs=32.5
Q ss_pred EEEEecCceeecCCccccchHHHHHHHHhhcCCCCceE--EEEeCCCCCCHHHHHHHHHHHcCCCCCC
Q 044580 57 GIAFDIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPY--IFLTNGGGFRESKRATELSKLLGVNILP 122 (269)
Q Consensus 57 a~lFDIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~--iflTN~~~~se~~~a~~Ls~~lGi~i~~ 122 (269)
+++||+||||++....+- .+++.+.+. .|.++ .+.....+.+..+..+++.+..|.++++
T Consensus 1 ~iiFD~DGTL~ds~~~~~---~~~~~~~~~---~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 62 (185)
T TIGR01990 1 AVIFDLDGVITDTAEYHY---LAWKALADE---LGIPFDEEFNESLKGVSREDSLERILDLGGKKYSE 62 (185)
T ss_pred CeEEcCCCccccChHHHH---HHHHHHHHH---cCCCCCHHHHHHhcCCChHHHHHHHHHhcCCCCCH
Confidence 589999999999885443 444444442 34442 1111222344445555554456665543
No 88
>PRK08238 hypothetical protein; Validated
Probab=96.73 E-value=0.017 Score=57.47 Aligned_cols=86 Identities=14% Similarity=0.060 Sum_probs=55.8
Q ss_pred ccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcc--------hHHHHHHHHhcCCCeE
Q 044580 73 IGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQG--------HSPFKQLFNRFENEFI 144 (269)
Q Consensus 73 iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s--------~tp~~~L~~~~~~k~V 144 (269)
.||+.+.++.+++ .|++++++||.. +..++.+.+.+|+ + +.|+.+ +.-...+.+.++.+.+
T Consensus 74 ~pga~e~L~~lk~----~G~~v~LaTas~----~~~a~~i~~~lGl-F--d~Vigsd~~~~~kg~~K~~~l~~~l~~~~~ 142 (479)
T PRK08238 74 NEEVLDYLRAERA----AGRKLVLATASD----ERLAQAVAAHLGL-F--DGVFASDGTTNLKGAAKAAALVEAFGERGF 142 (479)
T ss_pred ChhHHHHHHHHHH----CCCEEEEEeCCC----HHHHHHHHHHcCC-C--CEEEeCCCccccCCchHHHHHHHHhCccCe
Confidence 4888999999988 599999999864 3455666567886 1 234321 1112235555555545
Q ss_pred EEEcCc-hhHHHHhhcCceEecCccc
Q 044580 145 VAVGKG-EPAAVMAEYGFKNVLSIDE 169 (269)
Q Consensus 145 lvvG~~-~~~~v~~~~Gf~~v~t~~d 169 (269)
.++|+. .+...++.+|-..+++++.
T Consensus 143 ~yvGDS~~Dlp~~~~A~~av~Vn~~~ 168 (479)
T PRK08238 143 DYAGNSAADLPVWAAARRAIVVGASP 168 (479)
T ss_pred eEecCCHHHHHHHHhCCCeEEECCCH
Confidence 556764 4567789999777776654
No 89
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=96.62 E-value=0.0027 Score=55.37 Aligned_cols=122 Identities=12% Similarity=0.128 Sum_probs=67.3
Q ss_pred CccEEEEecCceeecCCccccchHHHHHHHHhhcCCCCceEE---EEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEc---
Q 044580 54 PSFGIAFDIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYI---FLTNGGGFRESKRATELSKLLGVNILPCQVVQ--- 127 (269)
Q Consensus 54 ~~~a~lFDIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~i---flTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~--- 127 (269)
++++++||+||||+.....+. ++++..-.+ .|+++- +.....+.+..+..+.+.+.+|++.+.+++..
T Consensus 3 ~~~~viFD~DGTL~d~~~~~~---~a~~~~~~~---~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (221)
T PRK10563 3 QIEAVFFDCDGTLVDSEVICS---RAYVTMFAE---FGITLSLEEVFKRFKGVKLYEIIDIISKEHGVTLAKAELEPVYR 76 (221)
T ss_pred CCCEEEECCCCCCCCChHHHH---HHHHHHHHH---cCCCCCHHHHHHHhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 478999999999999765443 334433332 355431 11223456667777777667787655444321
Q ss_pred c------------hHHHHHHHHhcCCCeEEEEcCch--hHHHHhhcCc-----eEecCccccccccccCCCCc
Q 044580 128 G------------HSPFKQLFNRFENEFIVAVGKGE--PAAVMAEYGF-----KNVLSIDEYASYFDGIDPLA 181 (269)
Q Consensus 128 s------------~tp~~~L~~~~~~k~VlvvG~~~--~~~v~~~~Gf-----~~v~t~~d~~~~~p~ldp~~ 181 (269)
. ..-+..+.+..+-+..++.+... ....++..|+ ..+++.+++...+|..+++.
T Consensus 77 ~~~~~~~~~~~~~~~gv~~~L~~L~~~~~ivTn~~~~~~~~~l~~~~l~~~F~~~v~~~~~~~~~KP~p~~~~ 149 (221)
T PRK10563 77 AEVARLFDSELEPIAGANALLESITVPMCVVSNGPVSKMQHSLGKTGMLHYFPDKLFSGYDIQRWKPDPALMF 149 (221)
T ss_pred HHHHHHHHccCCcCCCHHHHHHHcCCCEEEEeCCcHHHHHHHHHhcChHHhCcceEeeHHhcCCCCCChHHHH
Confidence 0 01123344444333344444331 3455677774 24566677777777666643
No 90
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=96.55 E-value=0.019 Score=48.92 Aligned_cols=41 Identities=17% Similarity=0.286 Sum_probs=36.3
Q ss_pred EEEecCceeecCC------------ccccchHHHHHHHHhhcCCCCceEEEEeCCCC
Q 044580 58 IAFDIDGVVLLGN------------TPIGGSNKALKRLYQHSGDLRIPYIFLTNGGG 102 (269)
Q Consensus 58 ~lFDIDGVL~~G~------------~~iPgA~eal~~L~~~~~~~gip~iflTN~~~ 102 (269)
+++||||||...+ ...|||.+.++.+.++ |..+++||..+-
T Consensus 2 VvsDIDGTiT~SD~~G~i~~~~G~d~~h~g~~~l~~~i~~~----GY~ilYlTaRp~ 54 (157)
T PF08235_consen 2 VVSDIDGTITKSDVLGHILPILGKDWTHPGAAELYRKIADN----GYKILYLTARPI 54 (157)
T ss_pred EEEeccCCcCccchhhhhhhccCchhhhhcHHHHHHHHHHC----CeEEEEECcCcH
Confidence 7899999999875 4679999999999995 999999998764
No 91
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=96.55 E-value=0.0052 Score=53.56 Aligned_cols=103 Identities=23% Similarity=0.295 Sum_probs=69.5
Q ss_pred ccEEEEecCceeecCCc----------cccchHHHHHHHHhhcCCCCceEEEEeCCCC-----CCHHHH-------HHHH
Q 044580 55 SFGIAFDIDGVVLLGNT----------PIGGSNKALKRLYQHSGDLRIPYIFLTNGGG-----FRESKR-------ATEL 112 (269)
Q Consensus 55 ~~a~lFDIDGVL~~G~~----------~iPgA~eal~~L~~~~~~~gip~iflTN~~~-----~se~~~-------a~~L 112 (269)
.+++++|-||||..... .+||+.+|+..|++ .|..++++||-+| .+++.. .+.|
T Consensus 5 ~k~lflDRDGtin~d~~~yv~~~~~~~~~~g~i~al~~l~~----~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l 80 (181)
T COG0241 5 QKALFLDRDGTINIDKGDYVDSLDDFQFIPGVIPALLKLQR----AGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKIL 80 (181)
T ss_pred CcEEEEcCCCceecCCCcccCcHHHhccCccHHHHHHHHHh----CCCeEEEEECCCCccccCccHHHHHHHHHHHHHHH
Confidence 57999999999998665 68999999999998 5999999999655 333332 2334
Q ss_pred HHHcCCCCCCCcEEc-chHH-------------HHHHHHhcC--CCeEEEEcCc-hhHHHHhhcCceEe
Q 044580 113 SKLLGVNILPCQVVQ-GHSP-------------FKQLFNRFE--NEFIVAVGKG-EPAAVMAEYGFKNV 164 (269)
Q Consensus 113 s~~lGi~i~~~qVi~-s~tp-------------~~~L~~~~~--~k~VlvvG~~-~~~~v~~~~Gf~~v 164 (269)
+..|+.++ .|+. .|.| +.++.++|. -.+-++||.. ...+.++.+|.+.+
T Consensus 81 -~~~gv~id--~i~~Cph~p~~~c~cRKP~~gm~~~~~~~~~iD~~~s~~VGD~~~Dlq~a~n~gi~~~ 146 (181)
T COG0241 81 -ASQGVKID--GILYCPHHPEDNCDCRKPKPGMLLSALKEYNIDLSRSYVVGDRLTDLQAAENAGIKGV 146 (181)
T ss_pred -HHcCCccc--eEEECCCCCCCCCcccCCChHHHHHHHHHhCCCccceEEecCcHHHHHHHHHCCCCce
Confidence 35576653 4443 3322 223344554 2456888986 45677788886643
No 92
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=96.51 E-value=0.0055 Score=51.45 Aligned_cols=57 Identities=25% Similarity=0.325 Sum_probs=31.5
Q ss_pred ccEEEEecCceeecCCccccchHHHHHHHHhhcCCCCceE--EEEeCCCCCCHHHHHHHHHHHcC
Q 044580 55 SFGIAFDIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPY--IFLTNGGGFRESKRATELSKLLG 117 (269)
Q Consensus 55 ~~a~lFDIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~--iflTN~~~~se~~~a~~Ls~~lG 117 (269)
+++++||+||||++..... .++++.+.++ .|.++ .+...-.|.+..+..+.+....+
T Consensus 1 ~~~iiFD~DGTL~ds~~~~---~~~~~~~~~~---~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 59 (185)
T TIGR02009 1 YKAVIFDMDGVIVDTAPLH---AQAWKHLADK---YGIEFDKQYNTSLGGLSREDILRAILKLRK 59 (185)
T ss_pred CCeEEEcCCCcccCChHHH---HHHHHHHHHH---cCCCCCHHHHHHcCCCCHHHHHHHHHHhcC
Confidence 4689999999999997543 3444443332 35442 11112234555555555544443
No 93
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=96.49 E-value=0.021 Score=49.51 Aligned_cols=88 Identities=23% Similarity=0.188 Sum_probs=61.3
Q ss_pred CccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcc---------hHHHHHHHHhcC
Q 044580 70 NTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQG---------HSPFKQLFNRFE 140 (269)
Q Consensus 70 ~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s---------~tp~~~L~~~~~ 140 (269)
-.+.||+.++|+.|++ .|+++.++||+... .....| +.+|+.---+.|+.+ ..++....++++
T Consensus 93 ~~~~~g~~~~L~~L~~----~g~~~~i~Tn~~~~---~~~~~l-~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~ 164 (221)
T TIGR02253 93 LRVYPGVRDTLMELRE----SGYRLGIITDGLPV---KQWEKL-ERLGVRDFFDAVITSEEEGVEKPHPKIFYAALKRLG 164 (221)
T ss_pred CCCCCCHHHHHHHHHH----CCCEEEEEeCCchH---HHHHHH-HhCChHHhccEEEEeccCCCCCCCHHHHHHHHHHcC
Confidence 4689999999999998 49999999998633 233445 467775223455543 134555556654
Q ss_pred --CCeEEEEcCch--hHHHHhhcCceEec
Q 044580 141 --NEFIVAVGKGE--PAAVMAEYGFKNVL 165 (269)
Q Consensus 141 --~k~VlvvG~~~--~~~v~~~~Gf~~v~ 165 (269)
...++++|+.. ....++.+|++.+.
T Consensus 165 ~~~~~~~~igDs~~~di~~A~~aG~~~i~ 193 (221)
T TIGR02253 165 VKPEEAVMVGDRLDKDIKGAKNLGMKTVW 193 (221)
T ss_pred CChhhEEEECCChHHHHHHHHHCCCEEEE
Confidence 35688999864 56779999998763
No 94
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=96.45 E-value=0.0055 Score=54.86 Aligned_cols=62 Identities=15% Similarity=0.027 Sum_probs=44.4
Q ss_pred EEEEecCceeec---CC-ccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEc
Q 044580 57 GIAFDIDGVVLL---GN-TPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQ 127 (269)
Q Consensus 57 a~lFDIDGVL~~---G~-~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~ 127 (269)
.|+.|+||||+. ++ ...|...++++.+.+ .|++|+++|. ++..+..+.+ +.+++. .|+-+|.
T Consensus 3 li~tDlDGTLl~~~~~~~~~~~~~~~~i~~~~~----~gi~fv~aTG---R~~~~~~~~~-~~~~~~-~p~~~I~ 68 (249)
T TIGR01485 3 LLVSDLDNTLVDHTDGDNQALLRLNALLEDHRG----EDSLLVYSTG---RSPHSYKELQ-KQKPLL-TPDIWVT 68 (249)
T ss_pred EEEEcCCCcCcCCCCCChHHHHHHHHHHHHhhc----cCceEEEEcC---CCHHHHHHHH-hcCCCC-CCCEEEE
Confidence 688899999995 44 456888899998887 4999999995 5566655544 467754 3443443
No 95
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=96.39 E-value=0.029 Score=47.97 Aligned_cols=88 Identities=15% Similarity=0.185 Sum_probs=60.0
Q ss_pred CCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcch---------HHHHHHHHhc
Q 044580 69 GNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGH---------SPFKQLFNRF 139 (269)
Q Consensus 69 G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~---------tp~~~L~~~~ 139 (269)
.-.++||+.++|+.|++ .|+++.++||+. .......+ +.+|+.---+.|+.+. ..+....+++
T Consensus 90 ~~~~~~~~~~~L~~L~~----~g~~~~i~Sn~~---~~~~~~~l-~~~gl~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~ 161 (198)
T TIGR01428 90 RLPPHPDVPAGLRALKE----RGYRLAILSNGS---PAMLKSLV-KHAGLDDPFDAVLSADAVRAYKPAPQVYQLALEAL 161 (198)
T ss_pred cCCCCCCHHHHHHHHHH----CCCeEEEEeCCC---HHHHHHHH-HHCCChhhhheeEehhhcCCCCCCHHHHHHHHHHh
Confidence 34689999999999998 499999999985 44444555 5788742234566531 3344455554
Q ss_pred C--CCeEEEEcCch-hHHHHhhcCceEe
Q 044580 140 E--NEFIVAVGKGE-PAAVMAEYGFKNV 164 (269)
Q Consensus 140 ~--~k~VlvvG~~~-~~~v~~~~Gf~~v 164 (269)
+ ...++++|+.. ....++.+|++.+
T Consensus 162 ~~~p~~~~~vgD~~~Di~~A~~~G~~~i 189 (198)
T TIGR01428 162 GVPPDEVLFVASNPWDLGGAKKFGFKTA 189 (198)
T ss_pred CCChhhEEEEeCCHHHHHHHHHCCCcEE
Confidence 3 35678889764 3456899998865
No 96
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=96.26 E-value=0.018 Score=49.01 Aligned_cols=87 Identities=25% Similarity=0.375 Sum_probs=57.0
Q ss_pred ceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcch--HH----HHHHHH
Q 044580 64 GVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGH--SP----FKQLFN 137 (269)
Q Consensus 64 GVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~--tp----~~~L~~ 137 (269)
|.+.....+.|++.++|+.|++ .|+++.++|+.. + ..+..+.+.+|++ ...|+... +| +..+.+
T Consensus 120 ~~~~~~d~~~~~~~~~l~~L~~----~Gi~~~i~TGD~---~-~~a~~~~~~lgi~--~~~v~a~~~~kP~~k~~~~~i~ 189 (215)
T PF00702_consen 120 GLFGLRDPLRPGAKEALQELKE----AGIKVAILTGDN---E-STASAIAKQLGIF--DSIVFARVIGKPEPKIFLRIIK 189 (215)
T ss_dssp EEEEEEEEBHTTHHHHHHHHHH----TTEEEEEEESSE---H-HHHHHHHHHTTSC--SEEEEESHETTTHHHHHHHHHH
T ss_pred EEEeecCcchhhhhhhhhhhhc----cCcceeeeeccc---c-ccccccccccccc--cccccccccccccchhHHHHHH
Confidence 4455566789999999999999 499999999764 3 3344454688883 12243333 34 233445
Q ss_pred hcC--CCeEEEEcCch-hHHHHhhcC
Q 044580 138 RFE--NEFIVAVGKGE-PAAVMAEYG 160 (269)
Q Consensus 138 ~~~--~k~VlvvG~~~-~~~v~~~~G 160 (269)
.++ ...|+++|++. +...++.+|
T Consensus 190 ~l~~~~~~v~~vGDg~nD~~al~~Ag 215 (215)
T PF00702_consen 190 ELQVKPGEVAMVGDGVNDAPALKAAG 215 (215)
T ss_dssp HHTCTGGGEEEEESSGGHHHHHHHSS
T ss_pred HHhcCCCEEEEEccCHHHHHHHHhCc
Confidence 443 45899999874 445566655
No 97
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=96.25 E-value=0.012 Score=52.93 Aligned_cols=59 Identities=24% Similarity=0.237 Sum_probs=44.5
Q ss_pred CCCccEEEEecCceeec-CCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCC
Q 044580 52 QRPSFGIAFDIDGVVLL-GNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVN 119 (269)
Q Consensus 52 ~~~~~a~lFDIDGVL~~-G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~ 119 (269)
.+....|+.||||||+. |.++ ..|...+.+|++ .|.|++++|. +|..+.. .|.+.+|++
T Consensus 4 ~~~~~lIFtDlD~TLl~~~ye~-~pA~pv~~el~d----~G~~Vi~~SS---KT~aE~~-~l~~~l~v~ 63 (274)
T COG3769 4 IQMPLLIFTDLDGTLLPHSYEW-QPAAPVLLELKD----AGVPVILCSS---KTRAEML-YLQKSLGVQ 63 (274)
T ss_pred cccceEEEEcccCcccCCCCCC-CccchHHHHHHH----cCCeEEEecc---chHHHHH-HHHHhcCCC
Confidence 34567788899999998 4444 446778888887 5999999985 5676655 466788887
No 98
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=96.25 E-value=0.0058 Score=55.83 Aligned_cols=56 Identities=13% Similarity=0.061 Sum_probs=41.4
Q ss_pred ccEEEEecCceeec------CCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcC
Q 044580 55 SFGIAFDIDGVVLL------GNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLG 117 (269)
Q Consensus 55 ~~a~lFDIDGVL~~------G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lG 117 (269)
...|+||+||||.. ...+-|...++|+.|.+. .|++++++|.. +.....+.+ +.++
T Consensus 14 ~~li~~D~DGTLl~~~~~p~~~~i~~~~~~~L~~L~~~---~g~~v~i~SGR---~~~~~~~~~-~~~~ 75 (266)
T PRK10187 14 NYAWFFDLDGTLAEIKPHPDQVVVPDNILQGLQLLATA---NDGALALISGR---SMVELDALA-KPYR 75 (266)
T ss_pred CEEEEEecCCCCCCCCCCcccccCCHHHHHHHHHHHhC---CCCcEEEEeCC---CHHHHHHhc-Cccc
Confidence 46899999999998 346678999999999862 38999999965 454444333 3444
No 99
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=96.24 E-value=0.038 Score=47.62 Aligned_cols=88 Identities=19% Similarity=0.142 Sum_probs=59.8
Q ss_pred CCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcc---------hHHHHHHHHhc
Q 044580 69 GNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQG---------HSPFKQLFNRF 139 (269)
Q Consensus 69 G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s---------~tp~~~L~~~~ 139 (269)
.-.+.||+.++|+.|++ .|++++++||+... .....+ +.+|+.---+.++.+ ..++..+.+++
T Consensus 73 ~~~~~~g~~~~L~~L~~----~g~~~~i~Sn~~~~---~~~~~l-~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~ 144 (205)
T TIGR01454 73 EVEVFPGVPELLAELRA----DGVGTAIATGKSGP---RARSLL-EALGLLPLFDHVIGSDEVPRPKPAPDIVREALRLL 144 (205)
T ss_pred ccccCCCHHHHHHHHHH----CCCeEEEEeCCchH---HHHHHH-HHcCChhheeeEEecCcCCCCCCChHHHHHHHHHc
Confidence 45789999999999998 49999999997532 233345 577774222345442 13445555555
Q ss_pred C--CCeEEEEcCch-hHHHHhhcCceEe
Q 044580 140 E--NEFIVAVGKGE-PAAVMAEYGFKNV 164 (269)
Q Consensus 140 ~--~k~VlvvG~~~-~~~v~~~~Gf~~v 164 (269)
+ ...++++|... ..+.++.+|++.+
T Consensus 145 ~~~~~~~l~igD~~~Di~aA~~~Gi~~i 172 (205)
T TIGR01454 145 DVPPEDAVMVGDAVTDLASARAAGTATV 172 (205)
T ss_pred CCChhheEEEcCCHHHHHHHHHcCCeEE
Confidence 4 35688899863 4567999998865
No 100
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=96.23 E-value=0.027 Score=48.25 Aligned_cols=85 Identities=18% Similarity=0.114 Sum_probs=59.0
Q ss_pred ccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcc---------hHHHHHHHHhcC-
Q 044580 71 TPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQG---------HSPFKQLFNRFE- 140 (269)
Q Consensus 71 ~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s---------~tp~~~L~~~~~- 140 (269)
.++||+.++|+.|++ .|++++++||+.. .....| +.+|+.---+.|+.| ..++.+..++++
T Consensus 105 ~~~~g~~~~l~~L~~----~g~~~~i~Sn~~~----~~~~~l-~~~~l~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~ 175 (203)
T TIGR02252 105 QVYPDAIKLLKDLRE----RGLILGVISNFDS----RLRGLL-EALGLLEYFDFVVTSYEVGAEKPDPKIFQEALERAGI 175 (203)
T ss_pred eeCcCHHHHHHHHHH----CCCEEEEEeCCch----hHHHHH-HHCCcHHhcceEEeecccCCCCCCHHHHHHHHHHcCC
Confidence 689999999999998 4999999999752 223456 577874333455543 134555556554
Q ss_pred -CCeEEEEcCch--hHHHHhhcCceEe
Q 044580 141 -NEFIVAVGKGE--PAAVMAEYGFKNV 164 (269)
Q Consensus 141 -~k~VlvvG~~~--~~~v~~~~Gf~~v 164 (269)
...+++||+.. ..+.++.+|++.+
T Consensus 176 ~~~~~~~IgD~~~~Di~~A~~aG~~~i 202 (203)
T TIGR02252 176 SPEEALHIGDSLRNDYQGARAAGWRAL 202 (203)
T ss_pred ChhHEEEECCCchHHHHHHHHcCCeee
Confidence 35688899863 4677899998754
No 101
>PRK09449 dUMP phosphatase; Provisional
Probab=96.15 E-value=0.036 Score=48.22 Aligned_cols=86 Identities=17% Similarity=0.190 Sum_probs=59.8
Q ss_pred CccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcc---------hHHHHHHHHhcC
Q 044580 70 NTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQG---------HSPFKQLFNRFE 140 (269)
Q Consensus 70 ~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s---------~tp~~~L~~~~~ 140 (269)
-.++||+.++|+.|++ ++++.++||+. .......| +.+|+.---+.|+.| ..++..+.++++
T Consensus 94 ~~~~~g~~~~L~~L~~-----~~~~~i~Tn~~---~~~~~~~l-~~~~l~~~fd~v~~~~~~~~~KP~p~~~~~~~~~~~ 164 (224)
T PRK09449 94 CTPLPGAVELLNALRG-----KVKMGIITNGF---TELQQVRL-ERTGLRDYFDLLVISEQVGVAKPDVAIFDYALEQMG 164 (224)
T ss_pred CccCccHHHHHHHHHh-----CCeEEEEeCCc---HHHHHHHH-HhCChHHHcCEEEEECccCCCCCCHHHHHHHHHHcC
Confidence 4689999999999985 79999999975 33333445 577774222455543 145556666664
Q ss_pred --C-CeEEEEcCch--hHHHHhhcCceEe
Q 044580 141 --N-EFIVAVGKGE--PAAVMAEYGFKNV 164 (269)
Q Consensus 141 --~-k~VlvvG~~~--~~~v~~~~Gf~~v 164 (269)
. ..+++||+.. ..+.++.+|++.+
T Consensus 165 ~~~~~~~~~vgD~~~~Di~~A~~aG~~~i 193 (224)
T PRK09449 165 NPDRSRVLMVGDNLHSDILGGINAGIDTC 193 (224)
T ss_pred CCCcccEEEEcCCcHHHHHHHHHCCCcEE
Confidence 2 4689999873 5677999998865
No 102
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=96.12 E-value=0.041 Score=45.77 Aligned_cols=86 Identities=19% Similarity=0.147 Sum_probs=57.9
Q ss_pred CccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcc---------hHHHHHHHHhcC
Q 044580 70 NTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQG---------HSPFKQLFNRFE 140 (269)
Q Consensus 70 ~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s---------~tp~~~L~~~~~ 140 (269)
..+.||+.++|+.|++ .|+++.++||+.... ...+ .++|+.---+.|+.+ ..++..+.++++
T Consensus 84 ~~~~~g~~~~l~~l~~----~g~~~~i~Tn~~~~~----~~~~-~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~ 154 (183)
T TIGR01509 84 LKPLPGVEPLLEALRA----RGKKLALLTNSPRDH----AVLV-QELGLRDLFDVVIFSGDVGRGKPDPDIYLLALKKLG 154 (183)
T ss_pred CccCcCHHHHHHHHHH----CCCeEEEEeCCchHH----HHHH-HhcCCHHHCCEEEEcCCCCCCCCCHHHHHHHHHHcC
Confidence 4788999999999998 499999999987433 2222 347764223455542 144555555553
Q ss_pred --CCeEEEEcCch-hHHHHhhcCceEe
Q 044580 141 --NEFIVAVGKGE-PAAVMAEYGFKNV 164 (269)
Q Consensus 141 --~k~VlvvG~~~-~~~v~~~~Gf~~v 164 (269)
.+.++++|+.. ..+.++.+|++.+
T Consensus 155 ~~~~~~~~vgD~~~di~aA~~~G~~~i 181 (183)
T TIGR01509 155 LKPEECLFVDDSPAGIEAAKAAGMHTV 181 (183)
T ss_pred CCcceEEEEcCCHHHHHHHHHcCCEEE
Confidence 45788888753 3566899998765
No 103
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=96.06 E-value=0.049 Score=47.25 Aligned_cols=86 Identities=14% Similarity=0.045 Sum_probs=58.6
Q ss_pred CccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCC--CCCCcEEcch---------HHHHHHHHh
Q 044580 70 NTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVN--ILPCQVVQGH---------SPFKQLFNR 138 (269)
Q Consensus 70 ~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~--i~~~qVi~s~---------tp~~~L~~~ 138 (269)
..++||+.++|+.|++ .|+++.++||+. ++.....| +.+|+. ---+.++.+. ..+..+.++
T Consensus 86 ~~l~~G~~~~L~~L~~----~g~~~~ivT~~~---~~~~~~~l-~~~~l~~~~~f~~i~~~~~~~~~KP~p~~~~~a~~~ 157 (220)
T TIGR03351 86 PVALPGAEEAFRSLRS----SGIKVALTTGFD---RDTAERLL-EKLGWTVGDDVDAVVCPSDVAAGRPAPDLILRAMEL 157 (220)
T ss_pred CccCCCHHHHHHHHHH----CCCEEEEEeCCc---hHHHHHHH-HHhhhhhhccCCEEEcCCcCCCCCCCHHHHHHHHHH
Confidence 3799999999999998 499999999986 33344455 467765 1123444431 344455566
Q ss_pred cC---CCeEEEEcCch-hHHHHhhcCceE
Q 044580 139 FE---NEFIVAVGKGE-PAAVMAEYGFKN 163 (269)
Q Consensus 139 ~~---~k~VlvvG~~~-~~~v~~~~Gf~~ 163 (269)
++ .+.++++|+.. ..+.++.+|+..
T Consensus 158 ~~~~~~~~~~~igD~~~Di~aa~~aG~~~ 186 (220)
T TIGR03351 158 TGVQDVQSVAVAGDTPNDLEAGINAGAGA 186 (220)
T ss_pred cCCCChhHeEEeCCCHHHHHHHHHCCCCe
Confidence 54 25688999653 456789999887
No 104
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=95.97 E-value=0.064 Score=46.83 Aligned_cols=89 Identities=8% Similarity=0.020 Sum_probs=61.1
Q ss_pred CCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcc--------h-HHHHHHHHhc
Q 044580 69 GNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQG--------H-SPFKQLFNRF 139 (269)
Q Consensus 69 G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s--------~-tp~~~L~~~~ 139 (269)
...++||+.++|+.|++ .|+|++++||+... .....+ +.+|+.--.+.++.+ . .++..+.+++
T Consensus 90 ~~~~~~g~~~~l~~l~~----~g~~~~i~S~~~~~---~~~~~l-~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~ 161 (222)
T PRK10826 90 TRPLLPGVREALALCKA----QGLKIGLASASPLH---MLEAVL-TMFDLRDYFDALASAEKLPYSKPHPEVYLNCAAKL 161 (222)
T ss_pred CCCCCCCHHHHHHHHHH----CCCeEEEEeCCcHH---HHHHHH-HhCcchhcccEEEEcccCCCCCCCHHHHHHHHHHc
Confidence 45789999999999998 49999999998633 333344 467764333455542 1 3555566666
Q ss_pred CC--CeEEEEcCc-hhHHHHhhcCceEec
Q 044580 140 EN--EFIVAVGKG-EPAAVMAEYGFKNVL 165 (269)
Q Consensus 140 ~~--k~VlvvG~~-~~~~v~~~~Gf~~v~ 165 (269)
+- ..++++|+. ...+.++.+|.+.+.
T Consensus 162 ~~~~~~~~~igDs~~Di~aA~~aG~~~i~ 190 (222)
T PRK10826 162 GVDPLTCVALEDSFNGMIAAKAARMRSIV 190 (222)
T ss_pred CCCHHHeEEEcCChhhHHHHHHcCCEEEE
Confidence 43 468889976 345779999988764
No 105
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=95.93 E-value=0.085 Score=45.28 Aligned_cols=87 Identities=20% Similarity=0.227 Sum_probs=59.4
Q ss_pred CccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcch---------HHHHHHHHhcC
Q 044580 70 NTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGH---------SPFKQLFNRFE 140 (269)
Q Consensus 70 ~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~---------tp~~~L~~~~~ 140 (269)
..++||+.++|+.|++ .|+++.++||++ +......| +.+|+.---+.++.+. .++..+.++++
T Consensus 84 ~~~~~g~~~~L~~l~~----~g~~~~i~S~~~---~~~~~~~l-~~~~l~~~f~~~~~~~~~~~~Kp~p~~~~~~~~~~~ 155 (213)
T TIGR01449 84 TSVFPGVEATLGALRA----KGLRLGLVTNKP---TPLARPLL-ELLGLAKYFSVLIGGDSLAQRKPHPDPLLLAAERLG 155 (213)
T ss_pred CccCCCHHHHHHHHHH----CCCeEEEEeCCC---HHHHHHHH-HHcCcHhhCcEEEecCCCCCCCCChHHHHHHHHHcC
Confidence 4689999999999998 499999999975 33333444 5677642223444321 34555666664
Q ss_pred --CCeEEEEcCch-hHHHHhhcCceEe
Q 044580 141 --NEFIVAVGKGE-PAAVMAEYGFKNV 164 (269)
Q Consensus 141 --~k~VlvvG~~~-~~~v~~~~Gf~~v 164 (269)
...++++|+.. ..+.++.+|+..+
T Consensus 156 ~~~~~~~~igDs~~d~~aa~~aG~~~i 182 (213)
T TIGR01449 156 VAPQQMVYVGDSRVDIQAARAAGCPSV 182 (213)
T ss_pred CChhHeEEeCCCHHHHHHHHHCCCeEE
Confidence 34588899863 4567899998876
No 106
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=95.90 E-value=0.056 Score=45.81 Aligned_cols=91 Identities=12% Similarity=0.082 Sum_probs=59.3
Q ss_pred CCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCc--------EEcc--------h---
Q 044580 69 GNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQ--------VVQG--------H--- 129 (269)
Q Consensus 69 G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~q--------Vi~s--------~--- 129 (269)
.-.+.||+.++|+.|++ .|++++++||+. ...++.+.+.+|+.---.. .... .
T Consensus 78 ~~~~~~g~~e~l~~l~~----~g~~~~IvS~~~----~~~~~~~l~~~g~~~~~~~~~~~~~~g~~~p~~~~~~~~~~k~ 149 (201)
T TIGR01491 78 EISLRDYAEELVRWLKE----KGLKTAIVSGGI----MCLAKKVAEKLNPDYVYSNELVFDEKGFIQPDGIVRVTFDNKG 149 (201)
T ss_pred hCCCCccHHHHHHHHHH----CCCEEEEEeCCc----HHHHHHHHHHhCCCeEEEEEEEEcCCCeEecceeeEEccccHH
Confidence 34689999999999998 499999999974 2334444467776411001 1110 0
Q ss_pred HHHHHHHHhcC--CCeEEEEcCc-hhHHHHhhcCceEecCc
Q 044580 130 SPFKQLFNRFE--NEFIVAVGKG-EPAAVMAEYGFKNVLSI 167 (269)
Q Consensus 130 tp~~~L~~~~~--~k~VlvvG~~-~~~~v~~~~Gf~~v~t~ 167 (269)
..+..+.++++ .+.++++|+. .....++.+|...++.+
T Consensus 150 ~~~~~~~~~~~~~~~~~i~iGDs~~D~~~a~~ag~~~a~~~ 190 (201)
T TIGR01491 150 EAVERLKRELNPSLTETVAVGDSKNDLPMFEVADISISLGD 190 (201)
T ss_pred HHHHHHHHHhCCCHHHEEEEcCCHhHHHHHHhcCCeEEECC
Confidence 24555555553 3468888976 45678999999887754
No 107
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=95.89 E-value=0.082 Score=47.40 Aligned_cols=88 Identities=16% Similarity=0.197 Sum_probs=60.4
Q ss_pred CCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcch---------HHHHHHHHhc
Q 044580 69 GNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGH---------SPFKQLFNRF 139 (269)
Q Consensus 69 G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~---------tp~~~L~~~~ 139 (269)
.-.++||+.+.|+.|++ .|+++.++||+. +......| +.+|+.---+.|+.+. .++....+++
T Consensus 106 ~~~l~pgv~e~L~~L~~----~g~~l~I~Tn~~---~~~~~~~l-~~~gl~~~Fd~iv~~~~~~~~KP~p~~~~~a~~~~ 177 (248)
T PLN02770 106 QLKPLNGLYKLKKWIED----RGLKRAAVTNAP---RENAELMI-SLLGLSDFFQAVIIGSECEHAKPHPDPYLKALEVL 177 (248)
T ss_pred cCCcCccHHHHHHHHHH----cCCeEEEEeCCC---HHHHHHHH-HHcCChhhCcEEEecCcCCCCCCChHHHHHHHHHh
Confidence 34689999999999998 499999999985 44444455 5788752234555431 3444455555
Q ss_pred C--CCeEEEEcCch-hHHHHhhcCceEe
Q 044580 140 E--NEFIVAVGKGE-PAAVMAEYGFKNV 164 (269)
Q Consensus 140 ~--~k~VlvvG~~~-~~~v~~~~Gf~~v 164 (269)
+ .+.++++|+.. ..+.++.+|+..+
T Consensus 178 ~~~~~~~l~vgDs~~Di~aA~~aGi~~i 205 (248)
T PLN02770 178 KVSKDHTFVFEDSVSGIKAGVAAGMPVV 205 (248)
T ss_pred CCChhHEEEEcCCHHHHHHHHHCCCEEE
Confidence 4 34588899863 4567899998865
No 108
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=95.81 E-value=0.11 Score=44.90 Aligned_cols=88 Identities=22% Similarity=0.251 Sum_probs=59.6
Q ss_pred CCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcc---------hHHHHHHHHhc
Q 044580 69 GNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQG---------HSPFKQLFNRF 139 (269)
Q Consensus 69 G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s---------~tp~~~L~~~~ 139 (269)
...++||+.++++.|++ .|++++++||+. +......+ +.+|+.---+.++.+ ...+..+.+++
T Consensus 91 ~~~~~~g~~~~l~~l~~----~g~~~~i~S~~~---~~~~~~~l-~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~ 162 (226)
T PRK13222 91 GSRLYPGVKETLAALKA----AGYPLAVVTNKP---TPFVAPLL-EALGIADYFSVVIGGDSLPNKKPDPAPLLLACEKL 162 (226)
T ss_pred cCccCCCHHHHHHHHHH----CCCeEEEEeCCC---HHHHHHHH-HHcCCccCccEEEcCCCCCCCCcChHHHHHHHHHc
Confidence 35689999999999998 499999999985 22333344 567774222344432 13455566665
Q ss_pred C--CCeEEEEcCc-hhHHHHhhcCceEe
Q 044580 140 E--NEFIVAVGKG-EPAAVMAEYGFKNV 164 (269)
Q Consensus 140 ~--~k~VlvvG~~-~~~~v~~~~Gf~~v 164 (269)
+ .+.++++|+. ...+.++.+|+..+
T Consensus 163 ~~~~~~~i~igD~~~Di~~a~~~g~~~i 190 (226)
T PRK13222 163 GLDPEEMLFVGDSRNDIQAARAAGCPSV 190 (226)
T ss_pred CCChhheEEECCCHHHHHHHHHCCCcEE
Confidence 4 3568889986 44677999998765
No 109
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=95.75 E-value=0.05 Score=51.49 Aligned_cols=96 Identities=16% Similarity=0.184 Sum_probs=66.3
Q ss_pred CccEEEEecCceeecCC-------------------ccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHH
Q 044580 54 PSFGIAFDIDGVVLLGN-------------------TPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSK 114 (269)
Q Consensus 54 ~~~a~lFDIDGVL~~G~-------------------~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~ 114 (269)
.-.+++.|||-|+...+ .+|||....++.|.+. ...|+++|||+.-.+=.-..+.|.
T Consensus 160 a~igiISDiDDTV~~T~V~~~~r~~~~s~~l~~~tr~~ipGV~~~yr~l~~~---~~apvfYvSnSPw~~f~~L~efi~- 235 (373)
T COG4850 160 AGIGIISDIDDTVKVTGVTEGPRKAGRSLLLHALTRQVIPGVSAWYRALTNL---GDAPVFYVSNSPWQLFPTLQEFIT- 235 (373)
T ss_pred cceeeeeccccceEecccccchHHHHHHhhhcccccCCCCCHHHHHHHHHhc---CCCCeEEecCChhHhHHHHHHHHh-
Confidence 34789999999988633 5899999999999984 228999999986444333333332
Q ss_pred HcCCCCC----------CCcEEcch-----HHHHHHHHhcCCCeEEEEcCchhH
Q 044580 115 LLGVNIL----------PCQVVQGH-----SPFKQLFNRFENEFIVAVGKGEPA 153 (269)
Q Consensus 115 ~lGi~i~----------~~qVi~s~-----tp~~~L~~~~~~k~VlvvG~~~~~ 153 (269)
.-+++.- .+.++.|+ .+++.+..+|++++..+||+.+..
T Consensus 236 ~~~~P~GPl~L~~~g~~~~~i~~sga~rK~~~l~nil~~~p~~kfvLVGDsGE~ 289 (373)
T COG4850 236 NRNFPYGPLLLRRWGGVLDNIIESGAARKGQSLRNILRRYPDRKFVLVGDSGEH 289 (373)
T ss_pred cCCCCCCchhHhhcCCcccccccchhhhcccHHHHHHHhCCCceEEEecCCCCc
Confidence 2234321 24555532 567767789999999999986653
No 110
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=95.50 E-value=0.12 Score=47.09 Aligned_cols=87 Identities=15% Similarity=0.141 Sum_probs=58.9
Q ss_pred CccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcch---------HHHHHHHHhcC
Q 044580 70 NTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGH---------SPFKQLFNRFE 140 (269)
Q Consensus 70 ~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~---------tp~~~L~~~~~ 140 (269)
-.++||+.++|+.|++ .|+++.++||++. ......| +.+|+.---+.|+.+. .++....++++
T Consensus 108 ~~l~pg~~e~L~~L~~----~g~~l~I~Tn~~~---~~~~~~l-~~~gl~~~Fd~ii~~~d~~~~KP~Pe~~~~a~~~l~ 179 (260)
T PLN03243 108 YRLRPGSREFVQALKK----HEIPIAVASTRPR---RYLERAI-EAVGMEGFFSVVLAAEDVYRGKPDPEMFMYAAERLG 179 (260)
T ss_pred cccCCCHHHHHHHHHH----CCCEEEEEeCcCH---HHHHHHH-HHcCCHhhCcEEEecccCCCCCCCHHHHHHHHHHhC
Confidence 3579999999999998 4999999999863 2333344 5677742234555431 34444555554
Q ss_pred --CCeEEEEcCc-hhHHHHhhcCceEe
Q 044580 141 --NEFIVAVGKG-EPAAVMAEYGFKNV 164 (269)
Q Consensus 141 --~k~VlvvG~~-~~~~v~~~~Gf~~v 164 (269)
...+++||.. ...+.++.+|.+.+
T Consensus 180 ~~p~~~l~IgDs~~Di~aA~~aG~~~i 206 (260)
T PLN03243 180 FIPERCIVFGNSNSSVEAAHDGCMKCV 206 (260)
T ss_pred CChHHeEEEcCCHHHHHHHHHcCCEEE
Confidence 3458889975 34677999998865
No 111
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=95.45 E-value=0.15 Score=43.95 Aligned_cols=107 Identities=19% Similarity=0.234 Sum_probs=57.7
Q ss_pred ccEEEEecCceeecC-----------------------C---ccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHH
Q 044580 55 SFGIAFDIDGVVLLG-----------------------N---TPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKR 108 (269)
Q Consensus 55 ~~a~lFDIDGVL~~G-----------------------~---~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~ 108 (269)
.+.++||+|+|||.- + ..+|++.++|+.|+. .|+++.+-|=+. +-+.
T Consensus 3 PklvvFDLD~TlW~~~~~~~~~~Pf~~~~~~~~v~D~~g~~v~lypdv~~iL~~L~~----~gv~lavASRt~---~P~~ 75 (169)
T PF12689_consen 3 PKLVVFDLDYTLWPPWMDTHVGPPFKKISNGNVVVDSRGEEVSLYPDVPEILQELKE----RGVKLAVASRTD---EPDW 75 (169)
T ss_dssp -SEEEE-STTTSSSS-TTTSS-S-EEE-TTS--EEETT--EE---TTHHHHHHHHHH----CT--EEEEE--S----HHH
T ss_pred CcEEEEcCcCCCCchhHhhccCCCceecCCCCEEEeCCCCEEEeCcCHHHHHHHHHH----CCCEEEEEECCC---ChHH
Confidence 578999999999941 1 257999999999998 499999999432 3356
Q ss_pred HHHHHHHcCCC------------CCCCcEEcch--HHHHHHHHhcC--CCeEEEEcCc-hhHHHHhhcCceEecCcc
Q 044580 109 ATELSKLLGVN------------ILPCQVVQGH--SPFKQLFNRFE--NEFIVAVGKG-EPAAVMAEYGFKNVLSID 168 (269)
Q Consensus 109 a~~Ls~~lGi~------------i~~~qVi~s~--tp~~~L~~~~~--~k~VlvvG~~-~~~~v~~~~Gf~~v~t~~ 168 (269)
|+++-+.|++. .+..+|..+. +-++.+.++.+ -..++..=.. .-+++...+|...+.+++
T Consensus 76 A~~~L~~l~i~~~~~~~~~~~~~F~~~eI~~gsK~~Hf~~i~~~tgI~y~eMlFFDDe~~N~~~v~~lGV~~v~v~~ 152 (169)
T PF12689_consen 76 ARELLKLLEIDDADGDGVPLIEYFDYLEIYPGSKTTHFRRIHRKTGIPYEEMLFFDDESRNIEVVSKLGVTCVLVPD 152 (169)
T ss_dssp HHHHHHHTT-C----------CCECEEEESSS-HHHHHHHHHHHH---GGGEEEEES-HHHHHHHHTTT-EEEE-SS
T ss_pred HHHHHHhcCCCccccccccchhhcchhheecCchHHHHHHHHHhcCCChhHEEEecCchhcceeeEecCcEEEEeCC
Confidence 66665788887 1112333221 33444444322 1234444332 234566779988877654
No 112
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=95.44 E-value=0.073 Score=46.17 Aligned_cols=22 Identities=9% Similarity=0.074 Sum_probs=17.1
Q ss_pred ccEEEEecCceeecCCccccch
Q 044580 55 SFGIAFDIDGVVLLGNTPIGGS 76 (269)
Q Consensus 55 ~~a~lFDIDGVL~~G~~~iPgA 76 (269)
.++++||+||||++....+-.|
T Consensus 1 ~k~iiFD~DGTL~ds~~~~~~~ 22 (220)
T TIGR03351 1 ISLVVLDMAGTTVDEDGLVYRA 22 (220)
T ss_pred CcEEEEecCCCeeccCchHHHH
Confidence 3689999999999988655333
No 113
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=95.36 E-value=0.12 Score=44.61 Aligned_cols=86 Identities=22% Similarity=0.208 Sum_probs=61.0
Q ss_pred CccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcch---------HHHHHHHHhcC
Q 044580 70 NTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGH---------SPFKQLFNRFE 140 (269)
Q Consensus 70 ~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~---------tp~~~L~~~~~ 140 (269)
-.+.|++.++|+.|+. ..++.++||+. .....++| +.+|+.---+.|+.|+ ..+.+..++.+
T Consensus 98 ~~~~~~~~~~L~~l~~-----~~~l~ilTNg~---~~~~~~~l-~~~gl~~~Fd~v~~s~~~g~~KP~~~~f~~~~~~~g 168 (229)
T COG1011 98 LPDYPEALEALKELGK-----KYKLGILTNGA---RPHQERKL-RQLGLLDYFDAVFISEDVGVAKPDPEIFEYALEKLG 168 (229)
T ss_pred CccChhHHHHHHHHHh-----hccEEEEeCCC---hHHHHHHH-HHcCChhhhheEEEecccccCCCCcHHHHHHHHHcC
Confidence 5788999999999987 38899999984 22334455 5788654456777753 34555556665
Q ss_pred --CCeEEEEcCchhH--HHHhhcCceEe
Q 044580 141 --NEFIVAVGKGEPA--AVMAEYGFKNV 164 (269)
Q Consensus 141 --~k~VlvvG~~~~~--~v~~~~Gf~~v 164 (269)
...++.||+.... .-++.+|++.|
T Consensus 169 ~~p~~~l~VgD~~~~di~gA~~~G~~~v 196 (229)
T COG1011 169 VPPEEALFVGDSLENDILGARALGMKTV 196 (229)
T ss_pred CCcceEEEECCChhhhhHHHHhcCcEEE
Confidence 3478999986544 45899999976
No 114
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=95.36 E-value=0.14 Score=45.64 Aligned_cols=88 Identities=15% Similarity=-0.056 Sum_probs=57.8
Q ss_pred CCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCC-CCcEEcch---------HHHHHHHHh
Q 044580 69 GNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNIL-PCQVVQGH---------SPFKQLFNR 138 (269)
Q Consensus 69 G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~-~~qVi~s~---------tp~~~L~~~ 138 (269)
...++||+.+.|+.|++ .|+++.++||++ +......| +.+|+.-- .+.|+.+. .++....++
T Consensus 97 ~~~~~pg~~e~L~~L~~----~g~~l~IvT~~~---~~~~~~~l-~~~gl~~~f~d~ii~~~~~~~~KP~p~~~~~a~~~ 168 (253)
T TIGR01422 97 YSSPIPGVIEVIAYLRA----RGIKIGSTTGYT---REMMDVVA-PEAALQGYRPDYNVTTDDVPAGRPAPWMALKNAIE 168 (253)
T ss_pred cCccCCCHHHHHHHHHH----CCCeEEEECCCc---HHHHHHHH-HHHHhcCCCCceEEccccCCCCCCCHHHHHHHHHH
Confidence 45789999999999998 499999999975 33333334 45555321 24455431 344444555
Q ss_pred cC---CCeEEEEcCch-hHHHHhhcCceEe
Q 044580 139 FE---NEFIVAVGKGE-PAAVMAEYGFKNV 164 (269)
Q Consensus 139 ~~---~k~VlvvG~~~-~~~v~~~~Gf~~v 164 (269)
++ ...+++||+.. ..+.++.+|...+
T Consensus 169 l~~~~~~~~l~IGDs~~Di~aA~~aGi~~i 198 (253)
T TIGR01422 169 LGVYDVAACVKVGDTVPDIEEGRNAGMWTV 198 (253)
T ss_pred cCCCCchheEEECCcHHHHHHHHHCCCeEE
Confidence 54 24588899763 4567899998765
No 115
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=95.23 E-value=0.13 Score=43.05 Aligned_cols=86 Identities=17% Similarity=0.111 Sum_probs=56.4
Q ss_pred CCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcch---------HHHHHHHHhc
Q 044580 69 GNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGH---------SPFKQLFNRF 139 (269)
Q Consensus 69 G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~---------tp~~~L~~~~ 139 (269)
...+.||+.++|+.|++ .|+++.++||+ . .....| +.+|+.--.+.++.+. .++....+++
T Consensus 86 ~~~~~~g~~~~l~~l~~----~g~~i~i~S~~--~---~~~~~l-~~~~l~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~ 155 (185)
T TIGR02009 86 GAEVLPGIENFLKRLKK----KGIAVGLGSSS--K---NADRIL-AKLGLTDYFDAIVDADEVKEGKPHPETFLLAAELL 155 (185)
T ss_pred CCCCCcCHHHHHHHHHH----cCCeEEEEeCc--h---hHHHHH-HHcChHHHCCEeeehhhCCCCCCChHHHHHHHHHc
Confidence 35799999999999998 49999999987 1 122334 5677642234454321 2344455555
Q ss_pred C--CCeEEEEcCc-hhHHHHhhcCceEe
Q 044580 140 E--NEFIVAVGKG-EPAAVMAEYGFKNV 164 (269)
Q Consensus 140 ~--~k~VlvvG~~-~~~~v~~~~Gf~~v 164 (269)
+ .+.++++|+. ...+.++.+|...+
T Consensus 156 ~~~~~~~v~IgD~~~di~aA~~~G~~~i 183 (185)
T TIGR02009 156 GVSPNECVVFEDALAGVQAARAAGMFAV 183 (185)
T ss_pred CCCHHHeEEEeCcHhhHHHHHHCCCeEe
Confidence 3 3467788875 34577899998754
No 116
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=95.18 E-value=0.12 Score=44.48 Aligned_cols=86 Identities=15% Similarity=0.206 Sum_probs=59.7
Q ss_pred CccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcch---------HHHHHHHHhc-
Q 044580 70 NTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGH---------SPFKQLFNRF- 139 (269)
Q Consensus 70 ~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~---------tp~~~L~~~~- 139 (269)
..++||+.++|+.|++ . ++++++||+. .......| +.+|+.---+.|+.+. ..+....+++
T Consensus 96 ~~~~~g~~~~L~~l~~----~-~~~~i~Sn~~---~~~~~~~l-~~~~l~~~fd~i~~~~~~~~~KP~~~~~~~~~~~~~ 166 (224)
T TIGR02254 96 HQLLPGAFELMENLQQ----K-FRLYIVTNGV---RETQYKRL-RKSGLFPFFDDIFVSEDAGIQKPDKEIFNYALERMP 166 (224)
T ss_pred CeeCccHHHHHHHHHh----c-CcEEEEeCCc---hHHHHHHH-HHCCcHhhcCEEEEcCccCCCCCCHHHHHHHHHHhc
Confidence 4789999999999998 4 9999999985 33334445 5778753335665431 2455555555
Q ss_pred C--CCeEEEEcCch--hHHHHhhcCceEe
Q 044580 140 E--NEFIVAVGKGE--PAAVMAEYGFKNV 164 (269)
Q Consensus 140 ~--~k~VlvvG~~~--~~~v~~~~Gf~~v 164 (269)
+ .+.+++||+.. ..+.++.+|...+
T Consensus 167 ~~~~~~~v~igD~~~~di~~A~~~G~~~i 195 (224)
T TIGR02254 167 KFSKEEVLMIGDSLTADIKGGQNAGLDTC 195 (224)
T ss_pred CCCchheEEECCCcHHHHHHHHHCCCcEE
Confidence 3 45688899863 5677899998765
No 117
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=95.16 E-value=0.074 Score=44.52 Aligned_cols=85 Identities=14% Similarity=0.115 Sum_probs=56.8
Q ss_pred CccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcch---------HHHHHHHHhcC
Q 044580 70 NTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGH---------SPFKQLFNRFE 140 (269)
Q Consensus 70 ~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~---------tp~~~L~~~~~ 140 (269)
..++||+.++|+.|++ .|+++.++||+.. .. ..| +.+|+.---+.++.+. ..+....++++
T Consensus 86 ~~~~pg~~~~L~~L~~----~g~~~~i~s~~~~--~~---~~l-~~~~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~ 155 (185)
T TIGR01990 86 ADVLPGIKNLLDDLKK----NNIKIALASASKN--AP---TVL-EKLGLIDYFDAIVDPAEIKKGKPDPEIFLAAAEGLG 155 (185)
T ss_pred cccCccHHHHHHHHHH----CCCeEEEEeCCcc--HH---HHH-HhcCcHhhCcEEEehhhcCCCCCChHHHHHHHHHcC
Confidence 4789999999999998 4999999998642 11 235 5778752234555431 23344445543
Q ss_pred --CCeEEEEcCch-hHHHHhhcCceEe
Q 044580 141 --NEFIVAVGKGE-PAAVMAEYGFKNV 164 (269)
Q Consensus 141 --~k~VlvvG~~~-~~~v~~~~Gf~~v 164 (269)
.+.+++||+.. ..+.++.+|++.+
T Consensus 156 ~~~~~~v~vgD~~~di~aA~~aG~~~i 182 (185)
T TIGR01990 156 VSPSECIGIEDAQAGIEAIKAAGMFAV 182 (185)
T ss_pred CCHHHeEEEecCHHHHHHHHHcCCEEE
Confidence 34688899763 3567899998765
No 118
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=95.03 E-value=0.096 Score=45.72 Aligned_cols=24 Identities=17% Similarity=0.351 Sum_probs=19.2
Q ss_pred CccEEEEecCceeecCCccccchH
Q 044580 54 PSFGIAFDIDGVVLLGNTPIGGSN 77 (269)
Q Consensus 54 ~~~a~lFDIDGVL~~G~~~iPgA~ 77 (269)
.+++++||+||||++....+..|.
T Consensus 6 ~~k~iiFD~DGTL~d~~~~~~~a~ 29 (222)
T PRK10826 6 QILAAIFDMDGLLIDSEPLWDRAE 29 (222)
T ss_pred cCcEEEEcCCCCCCcCHHHHHHHH
Confidence 589999999999999876554443
No 119
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=95.01 E-value=0.024 Score=50.67 Aligned_cols=17 Identities=18% Similarity=0.155 Sum_probs=15.0
Q ss_pred ccEEEEecCceeecCCc
Q 044580 55 SFGIAFDIDGVVLLGNT 71 (269)
Q Consensus 55 ~~a~lFDIDGVL~~G~~ 71 (269)
+++|+||+||||++...
T Consensus 2 ~k~viFD~DGTLiDs~~ 18 (253)
T TIGR01422 2 IEAVIFDWAGTTVDFGS 18 (253)
T ss_pred ceEEEEeCCCCeecCCC
Confidence 67999999999999754
No 120
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=94.93 E-value=0.17 Score=51.14 Aligned_cols=95 Identities=22% Similarity=0.304 Sum_probs=66.8
Q ss_pred CccEEEEecCceee----cCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcch
Q 044580 54 PSFGIAFDIDGVVL----LGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGH 129 (269)
Q Consensus 54 ~~~a~lFDIDGVL~----~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~ 129 (269)
....+.++.||++. -...+.||+.++++.|++ .|++++++||.. ...++.+.+.+|++ ++...
T Consensus 384 g~~~~~~~~~~~~~g~~~~~d~l~~~a~e~i~~Lk~----~Gi~v~ilSgd~----~~~a~~ia~~lgi~-----~~~~~ 450 (562)
T TIGR01511 384 GSTSVLVAVNGELAGVFALEDQLRPEAKEVIQALKR----RGIEPVMLTGDN----RKTAKAVAKELGIN-----VRAEV 450 (562)
T ss_pred CCEEEEEEECCEEEEEEEecccccHHHHHHHHHHHH----cCCeEEEEcCCC----HHHHHHHHHHcCCc-----EEccC
Confidence 34667888888764 466789999999999998 499999999874 34566666788985 33211
Q ss_pred ------HHHHHHHHhcCCCeEEEEcCc-hhHHHHhhcCceE
Q 044580 130 ------SPFKQLFNRFENEFIVAVGKG-EPAAVMAEYGFKN 163 (269)
Q Consensus 130 ------tp~~~L~~~~~~k~VlvvG~~-~~~~v~~~~Gf~~ 163 (269)
..++.+.+ .++.|+++|++ .+...++.+|.-.
T Consensus 451 ~p~~K~~~v~~l~~--~~~~v~~VGDg~nD~~al~~A~vgi 489 (562)
T TIGR01511 451 LPDDKAALIKELQE--KGRVVAMVGDGINDAPALAQADVGI 489 (562)
T ss_pred ChHHHHHHHHHHHH--cCCEEEEEeCCCccHHHHhhCCEEE
Confidence 23333332 34678999987 5567788888544
No 121
>PLN02811 hydrolase
Probab=94.93 E-value=0.15 Score=44.64 Aligned_cols=90 Identities=17% Similarity=0.176 Sum_probs=55.3
Q ss_pred CCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcch-----------HHHHHHHH
Q 044580 69 GNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGH-----------SPFKQLFN 137 (269)
Q Consensus 69 G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~-----------tp~~~L~~ 137 (269)
...++||+.++|+.|++ .|+++.++||+... ....++.+..|+.--.+.++.+. .++....+
T Consensus 76 ~~~l~~gv~e~l~~L~~----~g~~~~i~S~~~~~---~~~~~~~~~~~l~~~f~~i~~~~~~~~~~~KP~p~~~~~a~~ 148 (220)
T PLN02811 76 TSDLMPGAERLVRHLHA----KGIPIAIATGSHKR---HFDLKTQRHGELFSLMHHVVTGDDPEVKQGKPAPDIFLAAAR 148 (220)
T ss_pred hCCCCccHHHHHHHHHH----CCCcEEEEeCCchh---hHHHHHcccHHHHhhCCEEEECChhhccCCCCCcHHHHHHHH
Confidence 45679999999999998 49999999997532 22222222223210012333211 23444455
Q ss_pred hcC-----CCeEEEEcCc-hhHHHHhhcCceEec
Q 044580 138 RFE-----NEFIVAVGKG-EPAAVMAEYGFKNVL 165 (269)
Q Consensus 138 ~~~-----~k~VlvvG~~-~~~~v~~~~Gf~~v~ 165 (269)
+++ .+.+++||+. ...+.++.+|++.+.
T Consensus 149 ~~~~~~~~~~~~v~IgDs~~di~aA~~aG~~~i~ 182 (220)
T PLN02811 149 RFEDGPVDPGKVLVFEDAPSGVEAAKNAGMSVVM 182 (220)
T ss_pred HhCCCCCCccceEEEeccHhhHHHHHHCCCeEEE
Confidence 553 3568889986 346778999998764
No 122
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=94.90 E-value=0.17 Score=48.95 Aligned_cols=86 Identities=14% Similarity=0.190 Sum_probs=58.4
Q ss_pred cccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcch---------HHHHHHHHhcC--
Q 044580 72 PIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGH---------SPFKQLFNRFE-- 140 (269)
Q Consensus 72 ~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~---------tp~~~L~~~~~-- 140 (269)
++||+.++|+.|++ .|+++.++||+. ++.....| +.+|+.---+.|+.+. .++.+..++++
T Consensus 217 l~pGa~ElL~~Lk~----~GiklaIaSn~~---~~~~~~~L-~~lgL~~yFd~Iv~sddv~~~KP~Peifl~A~~~lgl~ 288 (381)
T PLN02575 217 LRTGSQEFVNVLMN----YKIPMALVSTRP---RKTLENAI-GSIGIRGFFSVIVAAEDVYRGKPDPEMFIYAAQLLNFI 288 (381)
T ss_pred cCcCHHHHHHHHHH----CCCeEEEEeCCC---HHHHHHHH-HHcCCHHHceEEEecCcCCCCCCCHHHHHHHHHHcCCC
Confidence 46899999999988 599999999975 44444445 5788752234455431 34445555554
Q ss_pred CCeEEEEcCc-hhHHHHhhcCceEec
Q 044580 141 NEFIVAVGKG-EPAAVMAEYGFKNVL 165 (269)
Q Consensus 141 ~k~VlvvG~~-~~~~v~~~~Gf~~v~ 165 (269)
.+.++++|+. ...+.++.+|.+.+.
T Consensus 289 Peecl~IGDS~~DIeAAk~AGm~~Ig 314 (381)
T PLN02575 289 PERCIVFGNSNQTVEAAHDARMKCVA 314 (381)
T ss_pred cccEEEEcCCHHHHHHHHHcCCEEEE
Confidence 4568889985 346779999988764
No 123
>PLN02940 riboflavin kinase
Probab=94.80 E-value=0.016 Score=55.70 Aligned_cols=122 Identities=16% Similarity=0.127 Sum_probs=62.7
Q ss_pred CCccEEEEecCceeecCCccccchHHHHHHHHhhcCCCCceEE--EEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEc---
Q 044580 53 RPSFGIAFDIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYI--FLTNGGGFRESKRATELSKLLGVNILPCQVVQ--- 127 (269)
Q Consensus 53 ~~~~a~lFDIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~i--flTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~--- 127 (269)
..+++++||+||||++....+- ++++.+.++ .|+++- -+..--|.+..+..+++.+.+|++...+++..
T Consensus 9 ~~ik~VIFDlDGTLvDt~~~~~---~a~~~~~~~---~G~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (382)
T PLN02940 9 KLVSHVILDLDGTLLNTDGIVS---DVLKAFLVK---YGKQWDGREAQKIVGKTPLEAAATVVEDYGLPCSTDEFNSEIT 82 (382)
T ss_pred ccCCEEEECCcCcCCcCHHHHH---HHHHHHHHH---cCCCCCHHHHHHhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3589999999999999886544 444433332 455431 01111234445555555456676543332211
Q ss_pred --------------c-hHHHHHHHHhcCCCeEEEEcCchh--HHHHh-hcC----ceEecCccccccccccCCCCc
Q 044580 128 --------------G-HSPFKQLFNRFENEFIVAVGKGEP--AAVMA-EYG----FKNVLSIDEYASYFDGIDPLA 181 (269)
Q Consensus 128 --------------s-~tp~~~L~~~~~~k~VlvvG~~~~--~~v~~-~~G----f~~v~t~~d~~~~~p~ldp~~ 181 (269)
+ ...++.|.+ .+-+..++.+.... ...++ ..| |..+++.+++...+|..+++.
T Consensus 83 ~~~~~~~~~~~l~pGv~elL~~Lk~-~g~~l~IvTn~~~~~~~~~l~~~~gl~~~Fd~ii~~d~v~~~KP~p~~~~ 157 (382)
T PLN02940 83 PLLSEQWCNIKALPGANRLIKHLKS-HGVPMALASNSPRANIEAKISCHQGWKESFSVIVGGDEVEKGKPSPDIFL 157 (382)
T ss_pred HHHHHHHccCCCCcCHHHHHHHHHH-CCCcEEEEeCCcHHHHHHHHHhccChHhhCCEEEehhhcCCCCCCHHHHH
Confidence 0 122333322 12233333333222 23454 566 577788888877777665543
No 124
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=94.75 E-value=0.022 Score=47.31 Aligned_cols=53 Identities=17% Similarity=0.271 Sum_probs=38.7
Q ss_pred cEEEEecCceeecCCc--------------------cccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHH
Q 044580 56 FGIAFDIDGVVLLGNT--------------------PIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKL 115 (269)
Q Consensus 56 ~a~lFDIDGVL~~G~~--------------------~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~ 115 (269)
+.++||+||||++... .=||+.++|+.|.+ ...+++.|.++ +.+++.+-+.
T Consensus 1 k~LVlDLD~TLv~~~~~~~~~~~~~~~~~~~~~~v~~RP~l~~FL~~l~~-----~~ev~i~T~~~----~~ya~~v~~~ 71 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSSKSPLPYDFKIIDQRGGYYVKLRPGLDEFLEELSK-----HYEVVIWTSAS----EEYAEPVLDA 71 (159)
T ss_dssp EEEEEE-CTTTEEEESSTCTT-SEEEETEEEEEEEEE-TTHHHHHHHHHH-----HCEEEEE-SS-----HHHHHHHHHH
T ss_pred CEEEEeCCCcEEEEeecCCCCcccceeccccceeEeeCchHHHHHHHHHH-----hceEEEEEeeh----hhhhhHHHHh
Confidence 4689999999997553 34999999999977 68999999874 5666666555
Q ss_pred cC
Q 044580 116 LG 117 (269)
Q Consensus 116 lG 117 (269)
++
T Consensus 72 ld 73 (159)
T PF03031_consen 72 LD 73 (159)
T ss_dssp HT
T ss_pred hh
Confidence 55
No 125
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=94.74 E-value=0.079 Score=48.30 Aligned_cols=29 Identities=14% Similarity=0.153 Sum_probs=21.3
Q ss_pred HHHHhhcC----ceEecCccccccccccCCCCc
Q 044580 153 AAVMAEYG----FKNVLSIDEYASYFDGIDPLA 181 (269)
Q Consensus 153 ~~v~~~~G----f~~v~t~~d~~~~~p~ldp~~ 181 (269)
...++..| |..+++.+|+...+|..+++.
T Consensus 140 ~~~l~~~gl~~~Fd~ii~~~d~~~~KP~Pe~~~ 172 (260)
T PLN03243 140 ERAIEAVGMEGFFSVVLAAEDVYRGKPDPEMFM 172 (260)
T ss_pred HHHHHHcCCHhhCcEEEecccCCCCCCCHHHHH
Confidence 45677777 566888888887888777653
No 126
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=94.70 E-value=0.037 Score=49.98 Aligned_cols=66 Identities=17% Similarity=0.260 Sum_probs=39.2
Q ss_pred ccEEEEecCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcc
Q 044580 55 SFGIAFDIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQG 128 (269)
Q Consensus 55 ~~a~lFDIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s 128 (269)
...|++|+||||+.|.. .+.+.++.+.+...+.++.|+++|. ++.+.+.+.+ +..+++ .|+-+|++
T Consensus 2 ~~ll~sDlD~Tl~~~~~---~~~~~l~~~l~~~~~~~~~~v~~TG---Rs~~~~~~~~-~~~~l~-~Pd~~I~s 67 (247)
T PF05116_consen 2 PRLLASDLDGTLIDGDD---EALARLEELLEQQARPEILFVYVTG---RSLESVLRLL-REYNLP-QPDYIITS 67 (247)
T ss_dssp SEEEEEETBTTTBHCHH---HHHHHHHHHHHHHHCCGEEEEEE-S---S-HHHHHHHH-HHCT-E-E-SEEEET
T ss_pred CEEEEEECCCCCcCCCH---HHHHHHHHHHHHhhCCCceEEEECC---CCHHHHHHHH-HhCCCC-CCCEEEec
Confidence 45789999999994432 2233333222211135888899884 6787877777 577875 47777774
No 127
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=94.53 E-value=0.13 Score=43.48 Aligned_cols=39 Identities=18% Similarity=0.062 Sum_probs=29.3
Q ss_pred cccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCC
Q 044580 72 PIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVN 119 (269)
Q Consensus 72 ~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~ 119 (269)
+.||+.++|+.|.+ +..+.++||++ +++|+.+-+.++..
T Consensus 59 ~rPgv~efL~~l~~-----~yel~I~T~~~----~~yA~~vl~~ldp~ 97 (156)
T TIGR02250 59 LRPFLHEFLKEASK-----LYEMHVYTMGT----RAYAQAIAKLIDPD 97 (156)
T ss_pred ECCCHHHHHHHHHh-----hcEEEEEeCCc----HHHHHHHHHHhCcC
Confidence 46899999999986 68999999974 35666655566543
No 128
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=94.50 E-value=0.3 Score=47.88 Aligned_cols=86 Identities=8% Similarity=0.093 Sum_probs=58.2
Q ss_pred ccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcc-------h-HHHHHHHHhcCCC
Q 044580 71 TPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQG-------H-SPFKQLFNRFENE 142 (269)
Q Consensus 71 ~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s-------~-tp~~~L~~~~~~k 142 (269)
.++||+.+.|+.|++ .|+++.++||+. .+.....| +.+|+.---+.|+.+ . .++....++++.+
T Consensus 330 ~l~pG~~e~L~~Lk~----~g~~l~IvS~~~---~~~~~~~l-~~~~l~~~f~~i~~~d~v~~~~kP~~~~~al~~l~~~ 401 (459)
T PRK06698 330 ALYPNVKEIFTYIKE----NNCSIYIASNGL---TEYLRAIV-SYYDLDQWVTETFSIEQINSLNKSDLVKSILNKYDIK 401 (459)
T ss_pred CcCCCHHHHHHHHHH----CCCeEEEEeCCc---hHHHHHHH-HHCCcHhhcceeEecCCCCCCCCcHHHHHHHHhcCcc
Confidence 468999999999998 499999999975 33334445 567764111233332 1 3454455566667
Q ss_pred eEEEEcCch-hHHHHhhcCceEe
Q 044580 143 FIVAVGKGE-PAAVMAEYGFKNV 164 (269)
Q Consensus 143 ~VlvvG~~~-~~~v~~~~Gf~~v 164 (269)
.++++|+.. ....++.+|+..+
T Consensus 402 ~~v~VGDs~~Di~aAk~AG~~~I 424 (459)
T PRK06698 402 EAAVVGDRLSDINAAKDNGLIAI 424 (459)
T ss_pred eEEEEeCCHHHHHHHHHCCCeEE
Confidence 899999763 3566899998765
No 129
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=94.49 E-value=0.28 Score=44.75 Aligned_cols=87 Identities=16% Similarity=0.139 Sum_probs=57.4
Q ss_pred CccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcc-----h----HHHHHHHHhcC
Q 044580 70 NTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQG-----H----SPFKQLFNRFE 140 (269)
Q Consensus 70 ~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s-----~----tp~~~L~~~~~ 140 (269)
..++||+.++|+.|++ .|++++++||++ +......| +.+|+.---+.|+.+ . .++..+.++++
T Consensus 100 ~~~~~g~~e~L~~Lk~----~g~~l~ivTn~~---~~~~~~~l-~~~~i~~~f~~i~~~d~~~~~Kp~p~~~~~~~~~~g 171 (272)
T PRK13223 100 TVVYPGVRDTLKWLKK----QGVEMALITNKP---ERFVAPLL-DQMKIGRYFRWIIGGDTLPQKKPDPAALLFVMKMAG 171 (272)
T ss_pred CccCCCHHHHHHHHHH----CCCeEEEEECCc---HHHHHHHH-HHcCcHhhCeEEEecCCCCCCCCCcHHHHHHHHHhC
Confidence 4679999999999998 499999999975 22223334 466764212233332 1 34555666654
Q ss_pred --CCeEEEEcCch-hHHHHhhcCceEe
Q 044580 141 --NEFIVAVGKGE-PAAVMAEYGFKNV 164 (269)
Q Consensus 141 --~k~VlvvG~~~-~~~v~~~~Gf~~v 164 (269)
...++++|+.. ..+.++.+|.+.+
T Consensus 172 ~~~~~~l~IGD~~~Di~aA~~aGi~~i 198 (272)
T PRK13223 172 VPPSQSLFVGDSRSDVLAAKAAGVQCV 198 (272)
T ss_pred CChhHEEEECCCHHHHHHHHHCCCeEE
Confidence 34688899863 4577899998764
No 130
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=94.48 E-value=0.16 Score=43.62 Aligned_cols=87 Identities=7% Similarity=0.021 Sum_probs=54.4
Q ss_pred ccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcc---------hHHHHHHHHhcC-
Q 044580 71 TPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQG---------HSPFKQLFNRFE- 140 (269)
Q Consensus 71 ~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s---------~tp~~~L~~~~~- 140 (269)
.+.||+.++|+.|++ .|+++.++||++....+. .+.+..|+.---+.|+.| -.++.+..++++
T Consensus 84 ~~~~g~~e~L~~l~~----~g~~~~i~Sn~~~~~~~~---~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~~~ 156 (199)
T PRK09456 84 ALRPEVIAIMHKLRE----QGHRVVVLSNTNRLHTTF---WPEEYPEVRAAADHIYLSQDLGMRKPEARIYQHVLQAEGF 156 (199)
T ss_pred ccCHHHHHHHHHHHh----CCCcEEEEcCCchhhHHH---HHhhchhHHHhcCEEEEecccCCCCCCHHHHHHHHHHcCC
Confidence 478999999999998 499999999986432211 111112222112345443 144555566664
Q ss_pred -CCeEEEEcCch-hHHHHhhcCceEe
Q 044580 141 -NEFIVAVGKGE-PAAVMAEYGFKNV 164 (269)
Q Consensus 141 -~k~VlvvG~~~-~~~v~~~~Gf~~v 164 (269)
...++++|+.. ..+.++.+|++.+
T Consensus 157 ~p~~~l~vgD~~~di~aA~~aG~~~i 182 (199)
T PRK09456 157 SAADAVFFDDNADNIEAANALGITSI 182 (199)
T ss_pred ChhHeEEeCCCHHHHHHHHHcCCEEE
Confidence 34578888753 3566899999875
No 131
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=94.46 E-value=0.12 Score=43.74 Aligned_cols=55 Identities=13% Similarity=0.161 Sum_probs=41.2
Q ss_pred cEEEEecCceeecCCc-------------------------cccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHH
Q 044580 56 FGIAFDIDGVVLLGNT-------------------------PIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRAT 110 (269)
Q Consensus 56 ~a~lFDIDGVL~~G~~-------------------------~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~ 110 (269)
..+++|+|+||++... .=||+.|+|+.|.+ ...+++.|++. +.+|+
T Consensus 2 ~~lvlDLDeTLi~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RPgl~eFL~~l~~-----~yei~I~Ts~~----~~yA~ 72 (162)
T TIGR02251 2 KTLVLDLDETLVHSTFKMPKVDADFKVPVLIDGKIIPVYVFKRPHVDEFLERVSK-----WYELVIFTASL----EEYAD 72 (162)
T ss_pred cEEEEcCCCCcCCCCCCCCCCCCceEEEEEecCcEEEEEEEECCCHHHHHHHHHh-----cCEEEEEcCCc----HHHHH
Confidence 4688999999996442 23899999999987 58999999874 45666
Q ss_pred HHHHHcCCC
Q 044580 111 ELSKLLGVN 119 (269)
Q Consensus 111 ~Ls~~lGi~ 119 (269)
.+-+.++..
T Consensus 73 ~il~~ldp~ 81 (162)
T TIGR02251 73 PVLDILDRG 81 (162)
T ss_pred HHHHHHCcC
Confidence 665666643
No 132
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=94.38 E-value=0.27 Score=42.42 Aligned_cols=89 Identities=17% Similarity=0.066 Sum_probs=54.0
Q ss_pred CccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcc---------hHHHHHHHHhcC
Q 044580 70 NTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQG---------HSPFKQLFNRFE 140 (269)
Q Consensus 70 ~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s---------~tp~~~L~~~~~ 140 (269)
-.+.||+.++|+.|++ .|+++.++||+......... .+ ..+|+.---+.|+.| ..++....++++
T Consensus 93 ~~~~~~~~~~L~~L~~----~g~~l~i~Sn~~~~~~~~~~-~~-~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~g 166 (211)
T TIGR02247 93 TKLRPSMMAAIKTLRA----KGFKTACITNNFPTDHSAEE-AL-LPGDIMALFDAVVESCLEGLRKPDPRIYQLMLERLG 166 (211)
T ss_pred cccChhHHHHHHHHHH----CCCeEEEEeCCCCccchhhh-Hh-hhhhhHhhCCEEEEeeecCCCCCCHHHHHHHHHHcC
Confidence 4579999999999998 49999999998644321111 12 123332112344433 133444455554
Q ss_pred --CCeEEEEcCc-hhHHHHhhcCceEe
Q 044580 141 --NEFIVAVGKG-EPAAVMAEYGFKNV 164 (269)
Q Consensus 141 --~k~VlvvG~~-~~~~v~~~~Gf~~v 164 (269)
...+++||+. .....++.+|++.+
T Consensus 167 ~~~~~~l~i~D~~~di~aA~~aG~~~i 193 (211)
T TIGR02247 167 VAPEECVFLDDLGSNLKPAAALGITTI 193 (211)
T ss_pred CCHHHeEEEcCCHHHHHHHHHcCCEEE
Confidence 2346667764 33567899998875
No 133
>PLN02940 riboflavin kinase
Probab=94.29 E-value=0.25 Score=47.57 Aligned_cols=90 Identities=14% Similarity=0.188 Sum_probs=58.3
Q ss_pred CCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcch---------HHHHHHHHhc
Q 044580 69 GNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGH---------SPFKQLFNRF 139 (269)
Q Consensus 69 G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~---------tp~~~L~~~~ 139 (269)
...++||+.+.|+.|++ .|+++.++||++ +......|.+.+|+.---+.|+.+. .++....+++
T Consensus 91 ~~~l~pGv~elL~~Lk~----~g~~l~IvTn~~---~~~~~~~l~~~~gl~~~Fd~ii~~d~v~~~KP~p~~~~~a~~~l 163 (382)
T PLN02940 91 NIKALPGANRLIKHLKS----HGVPMALASNSP---RANIEAKISCHQGWKESFSVIVGGDEVEKGKPSPDIFLEAAKRL 163 (382)
T ss_pred cCCCCcCHHHHHHHHHH----CCCcEEEEeCCc---HHHHHHHHHhccChHhhCCEEEehhhcCCCCCCHHHHHHHHHHc
Confidence 34689999999999998 499999999985 3333334432456532223444321 3444445555
Q ss_pred C--CCeEEEEcCc-hhHHHHhhcCceEec
Q 044580 140 E--NEFIVAVGKG-EPAAVMAEYGFKNVL 165 (269)
Q Consensus 140 ~--~k~VlvvG~~-~~~~v~~~~Gf~~v~ 165 (269)
+ .+.++++|+. ...+.++.+|++.+.
T Consensus 164 gv~p~~~l~VGDs~~Di~aA~~aGi~~I~ 192 (382)
T PLN02940 164 NVEPSNCLVIEDSLPGVMAGKAAGMEVIA 192 (382)
T ss_pred CCChhHEEEEeCCHHHHHHHHHcCCEEEE
Confidence 3 4568888975 345679999988653
No 134
>PLN03017 trehalose-phosphatase
Probab=94.08 E-value=0.075 Score=51.15 Aligned_cols=44 Identities=16% Similarity=0.175 Sum_probs=35.3
Q ss_pred CCccEEEEecCceee---c--CC-ccccchHHHHHHHHhhcCCCCceEEEEeCCC
Q 044580 53 RPSFGIAFDIDGVVL---L--GN-TPIGGSNKALKRLYQHSGDLRIPYIFLTNGG 101 (269)
Q Consensus 53 ~~~~a~lFDIDGVL~---~--G~-~~iPgA~eal~~L~~~~~~~gip~iflTN~~ 101 (269)
.+...+++|+||||. . .. .+-|+..++|+.|.+ +.+++++|..+
T Consensus 109 ~k~~llflD~DGTL~Piv~~p~~a~i~~~~~~aL~~La~-----~~~vaIvSGR~ 158 (366)
T PLN03017 109 GKQIVMFLDYDGTLSPIVDDPDKAFMSSKMRRTVKKLAK-----CFPTAIVTGRC 158 (366)
T ss_pred CCCeEEEEecCCcCcCCcCCcccccCCHHHHHHHHHHhc-----CCcEEEEeCCC
Confidence 355788999999999 3 22 477889999999995 78999999654
No 135
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=94.02 E-value=0.058 Score=46.69 Aligned_cols=31 Identities=16% Similarity=0.190 Sum_probs=23.4
Q ss_pred ccEEEEecCceeecCCccccchHHHH-HHHHh
Q 044580 55 SFGIAFDIDGVVLLGNTPIGGSNKAL-KRLYQ 85 (269)
Q Consensus 55 ~~a~lFDIDGVL~~G~~~iPgA~eal-~~L~~ 85 (269)
+++++||+||||++....+..+...+ +.+..
T Consensus 2 ~~~viFDlDGTL~ds~~~~~~~~~~~~~~~~~ 33 (221)
T TIGR02253 2 IKAIFFDLDDTLIDTSGLAEKARRNAIEVLIE 33 (221)
T ss_pred ceEEEEeCCCCCcCCCCccCHHHHHHHHHHHH
Confidence 57999999999999988777665543 34443
No 136
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=93.80 E-value=0.46 Score=40.47 Aligned_cols=91 Identities=11% Similarity=0.135 Sum_probs=58.7
Q ss_pred CccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCC--------CCCcEEcch------------
Q 044580 70 NTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNI--------LPCQVVQGH------------ 129 (269)
Q Consensus 70 ~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i--------~~~qVi~s~------------ 129 (269)
..+.||+.+.++.+++ .|.+++++||+. ...++.+.+.+|++- ..+.++++.
T Consensus 86 ~~~~~~~~~~l~~l~~----~g~~v~ivS~s~----~~~v~~~~~~lg~~~~~~~~l~~~~~g~~~g~~~~~~~~g~~K~ 157 (202)
T TIGR01490 86 SILYPEARDLIRWHKA----EGHTIVLVSASL----TILVKPLARILGIDNAIGTRLEESEDGIYTGNIDGNNCKGEGKV 157 (202)
T ss_pred HhccHHHHHHHHHHHH----CCCEEEEEeCCc----HHHHHHHHHHcCCcceEecceEEcCCCEEeCCccCCCCCChHHH
Confidence 3578999999999988 499999999874 344555556777741 122233321
Q ss_pred HHHHHHHHhcC--CCeEEEEcCc-hhHHHHhhcCceEecCcc
Q 044580 130 SPFKQLFNRFE--NEFIVAVGKG-EPAAVMAEYGFKNVLSID 168 (269)
Q Consensus 130 tp~~~L~~~~~--~k~VlvvG~~-~~~~v~~~~Gf~~v~t~~ 168 (269)
..++.+.++++ ...++++|+. .+...++.+|...++.++
T Consensus 158 ~~l~~~~~~~~~~~~~~~~~gDs~~D~~~~~~a~~~~~v~~~ 199 (202)
T TIGR01490 158 HALAELLAEEQIDLKDSYAYGDSISDLPLLSLVGHPYVVNPD 199 (202)
T ss_pred HHHHHHHHHcCCCHHHcEeeeCCcccHHHHHhCCCcEEeCCC
Confidence 12444444443 2367778875 456778889988776543
No 137
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=93.73 E-value=0.26 Score=49.41 Aligned_cols=98 Identities=21% Similarity=0.293 Sum_probs=62.1
Q ss_pred EEEEecCcee----ecCCccccchHHHHHHHHhhcCCCCc-eEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcc--h
Q 044580 57 GIAFDIDGVV----LLGNTPIGGSNKALKRLYQHSGDLRI-PYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQG--H 129 (269)
Q Consensus 57 a~lFDIDGVL----~~G~~~iPgA~eal~~L~~~~~~~gi-p~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s--~ 129 (269)
.+.+-.||++ .....+.||+.++++.|++ .|+ ++.++||.. +..++.+.+.+|++--...+... .
T Consensus 344 ~~~v~~~~~~~g~i~~~d~l~~~~~e~i~~L~~----~Gi~~v~vvTgd~----~~~a~~i~~~lgi~~~f~~~~p~~K~ 415 (536)
T TIGR01512 344 IVHVARDGTYLGYILLSDEPRPDAAEAIAELKA----LGIEKVVMLTGDR----RAVAERVARELGIDEVHAELLPEDKL 415 (536)
T ss_pred EEEEEECCEEEEEEEEeccchHHHHHHHHHHHH----cCCCcEEEEcCCC----HHHHHHHHHHcCChhhhhccCcHHHH
Confidence 3445556544 4466789999999999998 599 999999864 34455555788884111111111 1
Q ss_pred HHHHHHHHhcCCCeEEEEcCc-hhHHHHhhcCceEe
Q 044580 130 SPFKQLFNRFENEFIVAVGKG-EPAAVMAEYGFKNV 164 (269)
Q Consensus 130 tp~~~L~~~~~~k~VlvvG~~-~~~~v~~~~Gf~~v 164 (269)
..++.+.. ..+.|+++|++ .+...++.+|.-..
T Consensus 416 ~~i~~l~~--~~~~v~~vGDg~nD~~al~~A~vgia 449 (536)
T TIGR01512 416 EIVKELRE--KYGPVAMVGDGINDAPALAAADVGIA 449 (536)
T ss_pred HHHHHHHh--cCCEEEEEeCCHHHHHHHHhCCEEEE
Confidence 23333322 23578899987 45677888885443
No 138
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=93.68 E-value=0.29 Score=39.85 Aligned_cols=83 Identities=16% Similarity=0.089 Sum_probs=48.9
Q ss_pred CCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcc--------hHHHHHHHHhcC
Q 044580 69 GNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQG--------HSPFKQLFNRFE 140 (269)
Q Consensus 69 G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s--------~tp~~~L~~~~~ 140 (269)
+...+||+.++|+.|++ .|+++.++||+....-....+ .+ +.--.+.|+.+ ..++.++.++++
T Consensus 62 ~~~~~~g~~e~l~~L~~----~g~~~~i~T~~~~~~~~~~~~----~~-l~~~f~~i~~~~~~~~Kp~~~~~~~~~~~~~ 132 (154)
T TIGR01549 62 EEAYIRGAADLLKRLKE----AGIKLGIISNGSLRAQKLLLR----KH-LGDYFDLILGSDEFGAKPEPEIFLAALESLG 132 (154)
T ss_pred hheeccCHHHHHHHHHH----CcCeEEEEeCCchHHHHHHHH----HH-HHhcCcEEEecCCCCCCcCHHHHHHHHHHcC
Confidence 44567999999999998 499999999987443333332 32 21112233321 144555555553
Q ss_pred C-CeEEEEcCch-hHHHHhhcC
Q 044580 141 N-EFIVAVGKGE-PAAVMAEYG 160 (269)
Q Consensus 141 ~-k~VlvvG~~~-~~~v~~~~G 160 (269)
- ..++++|... ..+.++.+|
T Consensus 133 ~~~~~l~iGDs~~Di~aa~~aG 154 (154)
T TIGR01549 133 LPPEVLHVGDNLNDIEGARNAG 154 (154)
T ss_pred CCCCEEEEeCCHHHHHHHHHcc
Confidence 2 1688889762 234455554
No 139
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=93.66 E-value=0.51 Score=39.65 Aligned_cols=87 Identities=16% Similarity=0.067 Sum_probs=57.2
Q ss_pred cCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcch---------HHHHHHHHh
Q 044580 68 LGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGH---------SPFKQLFNR 138 (269)
Q Consensus 68 ~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~---------tp~~~L~~~ 138 (269)
.+..++|+ .+.|+.|++ ++++.++||++ +......| +.+|+.---+.|+++. .++....++
T Consensus 85 ~~~~~~~~-~e~L~~L~~-----~~~l~I~T~~~---~~~~~~~l-~~~~l~~~fd~i~~~~~~~~~KP~p~~~~~~~~~ 154 (188)
T PRK10725 85 DSVEPLPL-IEVVKAWHG-----RRPMAVGTGSE---SAIAEALL-AHLGLRRYFDAVVAADDVQHHKPAPDTFLRCAQL 154 (188)
T ss_pred ccCCCccH-HHHHHHHHh-----CCCEEEEcCCc---hHHHHHHH-HhCCcHhHceEEEehhhccCCCCChHHHHHHHHH
Confidence 45567885 699999986 58999999964 44444556 5788752234566531 345555666
Q ss_pred cC--CCeEEEEcCc-hhHHHHhhcCceEe
Q 044580 139 FE--NEFIVAVGKG-EPAAVMAEYGFKNV 164 (269)
Q Consensus 139 ~~--~k~VlvvG~~-~~~~v~~~~Gf~~v 164 (269)
++ ...++++|+. ...+.++.+|++.+
T Consensus 155 ~~~~~~~~l~igDs~~di~aA~~aG~~~i 183 (188)
T PRK10725 155 MGVQPTQCVVFEDADFGIQAARAAGMDAV 183 (188)
T ss_pred cCCCHHHeEEEeccHhhHHHHHHCCCEEE
Confidence 64 3457778875 34577999998865
No 140
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=93.63 E-value=0.82 Score=40.13 Aligned_cols=108 Identities=15% Similarity=0.202 Sum_probs=68.9
Q ss_pred cCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCC--C------CCcEEcc-------h--H
Q 044580 68 LGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNI--L------PCQVVQG-------H--S 130 (269)
Q Consensus 68 ~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i--~------~~qVi~s-------~--t 130 (269)
+.-.+.||+.++|+.|++ +.+++++||+. ...++.+.+.+|++- . .+..+++ + .
T Consensus 65 ~~i~l~pga~ell~~lk~-----~~~~~IVS~~~----~~~~~~il~~lgi~~~~an~l~~~~~g~~tG~~~~~~~~K~~ 135 (203)
T TIGR02137 65 ATLKPLEGAVEFVDWLRE-----RFQVVILSDTF----YEFSQPLMRQLGFPTLLCHKLEIDDSDRVVGYQLRQKDPKRQ 135 (203)
T ss_pred HhCCCCccHHHHHHHHHh-----CCeEEEEeCCh----HHHHHHHHHHcCCchhhceeeEEecCCeeECeeecCcchHHH
Confidence 334689999999999998 34999999974 345556657888851 1 1133332 1 2
Q ss_pred HHHHHHHhcCCCeEEEEcCc-hhHHHHhhcCceEecCccc-cccccccCCCCcchhhh
Q 044580 131 PFKQLFNRFENEFIVAVGKG-EPAAVMAEYGFKNVLSIDE-YASYFDGIDPLAQYKKW 186 (269)
Q Consensus 131 p~~~L~~~~~~k~VlvvG~~-~~~~v~~~~Gf~~v~t~~d-~~~~~p~ldp~~~y~~~ 186 (269)
.++.+ ++.+ ..++++|++ .+...++.+|...+..+.+ +....|.+--...|..+
T Consensus 136 ~l~~l-~~~~-~~~v~vGDs~nDl~ml~~Ag~~ia~~ak~~~~~~~~~~~~~~~~~~~ 191 (203)
T TIGR02137 136 SVIAF-KSLY-YRVIAAGDSYNDTTMLSEAHAGILFHAPENVIREFPQFPAVHTYEDL 191 (203)
T ss_pred HHHHH-HhhC-CCEEEEeCCHHHHHHHHhCCCCEEecCCHHHHHhCCCCCcccCHHHH
Confidence 23333 2222 257888986 4578899999998876654 44555555555556543
No 141
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=93.58 E-value=0.34 Score=48.79 Aligned_cols=97 Identities=22% Similarity=0.287 Sum_probs=65.6
Q ss_pred CccEEEEecCceee----cCCccccchHHHHHHHHhhcCCCC-ceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcc
Q 044580 54 PSFGIAFDIDGVVL----LGNTPIGGSNKALKRLYQHSGDLR-IPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQG 128 (269)
Q Consensus 54 ~~~a~lFDIDGVL~----~G~~~iPgA~eal~~L~~~~~~~g-ip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s 128 (269)
....+.+..||++. ....+.||+.++++.|++ .| +++.++||.. + ..++.+.+.+|++ +++..
T Consensus 363 g~~~~~v~~~~~~~g~i~~~d~~~~g~~e~l~~L~~----~g~i~v~ivTgd~---~-~~a~~i~~~lgi~----~~f~~ 430 (556)
T TIGR01525 363 GKTVVFVAVDGELLGVIALRDQLRPEAKEAIAALKR----AGGIKLVMLTGDN---R-SAAEAVAAELGID----EVHAE 430 (556)
T ss_pred CcEEEEEEECCEEEEEEEecccchHhHHHHHHHHHH----cCCCeEEEEeCCC---H-HHHHHHHHHhCCC----eeecc
Confidence 34557788888655 356799999999999998 48 9999999874 2 3455555788884 33331
Q ss_pred h------HHHHHHHHhcCCCeEEEEcCc-hhHHHHhhcCceEe
Q 044580 129 H------SPFKQLFNRFENEFIVAVGKG-EPAAVMAEYGFKNV 164 (269)
Q Consensus 129 ~------tp~~~L~~~~~~k~VlvvG~~-~~~~v~~~~Gf~~v 164 (269)
. ..++.+.. .+..|+++|++ .+...++.+|.-..
T Consensus 431 ~~p~~K~~~v~~l~~--~~~~v~~vGDg~nD~~al~~A~vgia 471 (556)
T TIGR01525 431 LLPEDKLAIVKELQE--EGGVVAMVGDGINDAPALAAADVGIA 471 (556)
T ss_pred CCHHHHHHHHHHHHH--cCCEEEEEECChhHHHHHhhCCEeEE
Confidence 1 23333322 23478889987 45677888885443
No 142
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=93.55 E-value=0.92 Score=38.93 Aligned_cols=110 Identities=14% Similarity=0.157 Sum_probs=71.6
Q ss_pred CccEEEEecCceeecCC--ccccchHHHHHHHHhhcCCCC-ceEEEEeCCCCCC----HHHHHHHHHHHcCCCCCCCcEE
Q 044580 54 PSFGIAFDIDGVVLLGN--TPIGGSNKALKRLYQHSGDLR-IPYIFLTNGGGFR----ESKRATELSKLLGVNILPCQVV 126 (269)
Q Consensus 54 ~~~a~lFDIDGVL~~G~--~~iPgA~eal~~L~~~~~~~g-ip~iflTN~~~~s----e~~~a~~Ls~~lGi~i~~~qVi 126 (269)
..+|++||=|.++.--. ...|.-..-++.++.- .| +-++++||..|.+ ..+.|+.|..+.|+++--+.+-
T Consensus 42 ~ikavVlDKDNcit~P~~~~Iwp~~l~~ie~~~~v---ygek~i~v~SNsaG~~~~D~d~s~Ak~le~k~gIpVlRHs~k 118 (190)
T KOG2961|consen 42 GIKAVVLDKDNCITAPYSLAIWPPLLPSIERCKAV---YGEKDIAVFSNSAGLTEYDHDDSKAKALEAKIGIPVLRHSVK 118 (190)
T ss_pred CceEEEEcCCCeeeCCcccccCchhHHHHHHHHHH---hCcccEEEEecCcCccccCCchHHHHHHHHhhCCceEeeccc
Confidence 68999999999998643 3456556666666653 34 8899999998874 4567888888889986544443
Q ss_pred cch---HHHHHHHHhc---CCCeEEEEcCchhHHH--HhhcCceEecC
Q 044580 127 QGH---SPFKQLFNRF---ENEFIVAVGKGEPAAV--MAEYGFKNVLS 166 (269)
Q Consensus 127 ~s~---tp~~~L~~~~---~~k~VlvvG~~~~~~v--~~~~Gf~~v~t 166 (269)
... ....|+.... ..+.++++|+.-+.++ +...|+--|-+
T Consensus 119 KP~ct~E~~~y~~~Nshv~~~se~~~vGDRlfTDI~~aN~mGs~gVw~ 166 (190)
T KOG2961|consen 119 KPACTAEEVEYHFGNSHVCTSSELIMVGDRLFTDIVYANRMGSLGVWT 166 (190)
T ss_pred CCCccHHHHHHHhCCcccCChhHeEEEccchhhhHhhhhhccceeEEe
Confidence 322 2233332110 1245788998877665 45567665543
No 143
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=93.41 E-value=0.13 Score=46.07 Aligned_cols=43 Identities=14% Similarity=0.054 Sum_probs=33.6
Q ss_pred ccEEEEecCceeecCC------ccccchHHHHHHHHhhcCCCCceEEEEeCC
Q 044580 55 SFGIAFDIDGVVLLGN------TPIGGSNKALKRLYQHSGDLRIPYIFLTNG 100 (269)
Q Consensus 55 ~~a~lFDIDGVL~~G~------~~iPgA~eal~~L~~~~~~~gip~iflTN~ 100 (269)
..+++||+||||..-. .+-|+..++|+.|.+. .+..++++|..
T Consensus 3 ~~~l~lD~DGTL~~~~~~p~~~~~~~~~~~~L~~L~~~---~~~~v~ivSGR 51 (244)
T TIGR00685 3 KRAFFFDYDGTLSEIVPDPDAAVVSDRLLTILQKLAAR---PHNAIWIISGR 51 (244)
T ss_pred cEEEEEecCccccCCcCCCcccCCCHHHHHHHHHHHhC---CCCeEEEEECC
Confidence 4689999999998632 2458899999999873 46677899965
No 144
>PLN02382 probable sucrose-phosphatase
Probab=93.19 E-value=0.27 Score=47.91 Aligned_cols=65 Identities=17% Similarity=0.093 Sum_probs=41.2
Q ss_pred CccEEEEecCceeecCCc--ccc-chHHHH-HHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEc
Q 044580 54 PSFGIAFDIDGVVLLGNT--PIG-GSNKAL-KRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQ 127 (269)
Q Consensus 54 ~~~a~lFDIDGVL~~G~~--~iP-gA~eal-~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~ 127 (269)
+...|+.|+||||+.++. -++ ...+++ +.+.+ .|+.|++.|. ++...+.+.+ +.+++. .|+-+|.
T Consensus 8 ~~~lI~sDLDGTLL~~~~~~~~s~~~~~~l~~~~~~----~gi~fv~aTG---R~~~~~~~l~-~~~~l~-~p~~~I~ 76 (413)
T PLN02382 8 PRLMIVSDLDHTMVDHHDPENLSLLRFNALWEAEYR----HDSLLVFSTG---RSPTLYKELR-KEKPLL-TPDITIM 76 (413)
T ss_pred CCEEEEEcCCCcCcCCCCccchhHHHHHHHHHHhhc----CCeeEEEEcC---CCHHHHHHHH-HhCCCC-CCCEEEE
Confidence 456888899999997632 332 334444 66666 5999999884 5666665444 566654 3443443
No 145
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=93.14 E-value=0.56 Score=39.10 Aligned_cols=42 Identities=17% Similarity=0.227 Sum_probs=31.0
Q ss_pred CccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCC
Q 044580 70 NTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVN 119 (269)
Q Consensus 70 ~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~ 119 (269)
..+.||+.+.++.|++ .|+++.++||+... .....+ +.+|+.
T Consensus 71 ~~l~~g~~~ll~~l~~----~g~~~~i~S~~~~~---~~~~~l-~~~~l~ 112 (188)
T TIGR01489 71 APIDPGFKEFIAFIKE----HGIDFIVISDGNDF---FIDPVL-EGIGEK 112 (188)
T ss_pred CCCCccHHHHHHHHHH----cCCcEEEEeCCcHH---HHHHHH-HHcCCh
Confidence 5789999999999998 49999999998633 222233 456653
No 146
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=93.08 E-value=0.034 Score=47.82 Aligned_cols=16 Identities=31% Similarity=0.642 Sum_probs=12.8
Q ss_pred EEEecCceeecCCccc
Q 044580 58 IAFDIDGVVLLGNTPI 73 (269)
Q Consensus 58 ~lFDIDGVL~~G~~~i 73 (269)
++||+||||++....+
T Consensus 1 viFD~DGTL~Ds~~~~ 16 (213)
T TIGR01449 1 VLFDLDGTLVDSAPDI 16 (213)
T ss_pred CeecCCCccccCHHHH
Confidence 5899999999876433
No 147
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=92.94 E-value=0.064 Score=45.94 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=17.5
Q ss_pred cEEEEecCceeecCCccccchHH
Q 044580 56 FGIAFDIDGVVLLGNTPIGGSNK 78 (269)
Q Consensus 56 ~a~lFDIDGVL~~G~~~iPgA~e 78 (269)
++++||+||||++....+..|..
T Consensus 1 k~viFDlDGTL~d~~~~~~~a~~ 23 (203)
T TIGR02252 1 KLITFDAVGTLLALKEPVGEVYC 23 (203)
T ss_pred CeEEEecCCceeeeCCCHHHHHH
Confidence 47999999999998755544443
No 148
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=92.85 E-value=0.14 Score=53.17 Aligned_cols=45 Identities=16% Similarity=0.148 Sum_probs=36.1
Q ss_pred CccEEEEecCceeecC------CccccchHHHHHHHHhhcCCCCceEEEEeCCC
Q 044580 54 PSFGIAFDIDGVVLLG------NTPIGGSNKALKRLYQHSGDLRIPYIFLTNGG 101 (269)
Q Consensus 54 ~~~a~lFDIDGVL~~G------~~~iPgA~eal~~L~~~~~~~gip~iflTN~~ 101 (269)
+.+.|+||+||||... ..+-++..++|+.|.+. .|+.++++|..+
T Consensus 491 ~~rLi~~D~DGTL~~~~~~~~~~~~~~~~~~~L~~L~~d---~g~~V~ivSGR~ 541 (726)
T PRK14501 491 SRRLLLLDYDGTLVPFAPDPELAVPDKELRDLLRRLAAD---PNTDVAIISGRD 541 (726)
T ss_pred cceEEEEecCccccCCCCCcccCCCCHHHHHHHHHHHcC---CCCeEEEEeCCC
Confidence 4689999999999963 23557899999999982 489999999653
No 149
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=92.66 E-value=0.07 Score=46.17 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=16.4
Q ss_pred CCccEEEEecCceeecCCcc
Q 044580 53 RPSFGIAFDIDGVVLLGNTP 72 (269)
Q Consensus 53 ~~~~a~lFDIDGVL~~G~~~ 72 (269)
..+++++||+||||++....
T Consensus 4 ~~~~~iiFD~DGTL~d~~~~ 23 (226)
T PRK13222 4 MDIRAVAFDLDGTLVDSAPD 23 (226)
T ss_pred CcCcEEEEcCCcccccCHHH
Confidence 45889999999999987543
No 150
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=92.43 E-value=0.062 Score=48.19 Aligned_cols=29 Identities=21% Similarity=0.234 Sum_probs=21.5
Q ss_pred HHHHhhcC----ceEecCccccccccccCCCCc
Q 044580 153 AAVMAEYG----FKNVLSIDEYASYFDGIDPLA 181 (269)
Q Consensus 153 ~~v~~~~G----f~~v~t~~d~~~~~p~ldp~~ 181 (269)
...++..| |..+++.+|+...+|..+++.
T Consensus 139 ~~~l~~~gl~~~Fd~iv~~~~~~~~KP~p~~~~ 171 (248)
T PLN02770 139 ELMISLLGLSDFFQAVIIGSECEHAKPHPDPYL 171 (248)
T ss_pred HHHHHHcCChhhCcEEEecCcCCCCCCChHHHH
Confidence 45578888 667888888888788777744
No 151
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=92.33 E-value=0.22 Score=42.91 Aligned_cols=16 Identities=31% Similarity=0.490 Sum_probs=14.1
Q ss_pred ccEEEEecCceeecCC
Q 044580 55 SFGIAFDIDGVVLLGN 70 (269)
Q Consensus 55 ~~a~lFDIDGVL~~G~ 70 (269)
+++|+||+||||++..
T Consensus 2 ik~viFDldGtL~d~~ 17 (211)
T TIGR02247 2 IKAVIFDFGGVLLPSP 17 (211)
T ss_pred ceEEEEecCCceecCH
Confidence 4689999999999974
No 152
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=92.10 E-value=0.079 Score=45.61 Aligned_cols=81 Identities=10% Similarity=0.140 Sum_probs=43.8
Q ss_pred CCCCHHHHHHHHHHHcCCCCCCCcEEcc--------hHHHHHHHHhc--CCCeEEEEcCchhH--H-HHhhc-C----ce
Q 044580 101 GGFRESKRATELSKLLGVNILPCQVVQG--------HSPFKQLFNRF--ENEFIVAVGKGEPA--A-VMAEY-G----FK 162 (269)
Q Consensus 101 ~~~se~~~a~~Ls~~lGi~i~~~qVi~s--------~tp~~~L~~~~--~~k~VlvvG~~~~~--~-v~~~~-G----f~ 162 (269)
|+.+..+..+.+.+.+|.+.+.+++... ...+..+.+.. .+.++.++-..... + .+..+ | |.
T Consensus 50 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~fd 129 (199)
T PRK09456 50 GEISDEAFAEALCHEMALSLSYEQFAHGWQAVFVALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAAD 129 (199)
T ss_pred CCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhcC
Confidence 4577888888888888887654432211 11222233322 23344444332211 1 12222 3 67
Q ss_pred EecCccccccccccCCCCc
Q 044580 163 NVLSIDEYASYFDGIDPLA 181 (269)
Q Consensus 163 ~v~t~~d~~~~~p~ldp~~ 181 (269)
.+++.+++...+|..+++.
T Consensus 130 ~v~~s~~~~~~KP~p~~~~ 148 (199)
T PRK09456 130 HIYLSQDLGMRKPEARIYQ 148 (199)
T ss_pred EEEEecccCCCCCCHHHHH
Confidence 7888888888888777754
No 153
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=92.07 E-value=0.58 Score=41.77 Aligned_cols=88 Identities=9% Similarity=-0.004 Sum_probs=54.1
Q ss_pred CccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHc---CCC--CC--CCcEEcc---hHHHHHHHHhc
Q 044580 70 NTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLL---GVN--IL--PCQVVQG---HSPFKQLFNRF 139 (269)
Q Consensus 70 ~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~l---Gi~--i~--~~qVi~s---~tp~~~L~~~~ 139 (269)
..+.||+.++|+.|++ .|+++.++||++...... .+ +.. ++. ++ -+.++.+ -.++..+.+++
T Consensus 94 ~~lypgv~e~L~~Lk~----~G~~l~I~Sn~s~~~~~~---~~-~~~~~~~L~~~f~~~fd~~~g~KP~p~~y~~i~~~l 165 (220)
T TIGR01691 94 SHLYPDVPPALEAWLQ----LGLRLAVYSSGSVPAQKL---LF-GHSDAGNLTPYFSGYFDTTVGLKTEAQSYVKIAGQL 165 (220)
T ss_pred cCcCcCHHHHHHHHHH----CCCEEEEEeCCCHHHHHH---HH-hhccccchhhhcceEEEeCcccCCCHHHHHHHHHHh
Confidence 3689999999999998 499999999986322111 22 222 211 11 0111211 14455555655
Q ss_pred C--CCeEEEEcCch-hHHHHhhcCceEec
Q 044580 140 E--NEFIVAVGKGE-PAAVMAEYGFKNVL 165 (269)
Q Consensus 140 ~--~k~VlvvG~~~-~~~v~~~~Gf~~v~ 165 (269)
+ ...++++|+.. ..+.++.+|++.+.
T Consensus 166 gv~p~e~lfVgDs~~Di~AA~~AG~~ti~ 194 (220)
T TIGR01691 166 GSPPREILFLSDIINELDAARKAGLHTGQ 194 (220)
T ss_pred CcChhHEEEEeCCHHHHHHHHHcCCEEEE
Confidence 4 35688899753 35779999998764
No 154
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=92.06 E-value=0.21 Score=48.32 Aligned_cols=29 Identities=7% Similarity=0.139 Sum_probs=21.6
Q ss_pred HHHHhhcC----ceEecCccccccccccCCCCc
Q 044580 153 AAVMAEYG----FKNVLSIDEYASYFDGIDPLA 181 (269)
Q Consensus 153 ~~v~~~~G----f~~v~t~~d~~~~~p~ldp~~ 181 (269)
...++.+| |+.+++.+|+...+|..+++.
T Consensus 247 ~~~L~~lgL~~yFd~Iv~sddv~~~KP~Peifl 279 (381)
T PLN02575 247 ENAIGSIGIRGFFSVIVAAEDVYRGKPDPEMFI 279 (381)
T ss_pred HHHHHHcCCHHHceEEEecCcCCCCCCCHHHHH
Confidence 45577888 677888888877788776654
No 155
>PLN02151 trehalose-phosphatase
Probab=91.97 E-value=0.23 Score=47.61 Aligned_cols=49 Identities=12% Similarity=0.130 Sum_probs=37.4
Q ss_pred CccEEEEecCceee----c--CCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHH
Q 044580 54 PSFGIAFDIDGVVL----L--GNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRAT 110 (269)
Q Consensus 54 ~~~a~lFDIDGVL~----~--G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~ 110 (269)
+..++++|.||||. + .-.+-|+..++|+.|.+ +.+++++|. ++.+...+
T Consensus 97 ~~~ll~lDyDGTL~PIv~~P~~A~~~~~~~~aL~~La~-----~~~vaIvSG---R~~~~l~~ 151 (354)
T PLN02151 97 KQIVMFLDYDGTLSPIVDDPDRAFMSKKMRNTVRKLAK-----CFPTAIVSG---RCREKVSS 151 (354)
T ss_pred CceEEEEecCccCCCCCCCcccccCCHHHHHHHHHHhc-----CCCEEEEEC---CCHHHHHH
Confidence 45789999999999 2 33577889999999986 679999995 44544443
No 156
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=91.78 E-value=0.84 Score=40.22 Aligned_cols=62 Identities=16% Similarity=0.077 Sum_probs=47.3
Q ss_pred CCCccEEEEecCceeecCCc--------cccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCC
Q 044580 52 QRPSFGIAFDIDGVVLLGNT--------PIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILP 122 (269)
Q Consensus 52 ~~~~~a~lFDIDGVL~~G~~--------~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~ 122 (269)
+++.+.+++|+||||++... .=|+..++|+.+.+ ..-+++-|-++ ..+++.+-..+|+...+
T Consensus 18 ~~~kklLVLDLDeTLvh~~~~~~~~~~~kRP~l~eFL~~~~~-----~feIvVwTAa~----~~ya~~~l~~l~~~~~~ 87 (195)
T TIGR02245 18 REGKKLLVLDIDYTLFDHRSPAETGEELMRPYLHEFLTSAYE-----DYDIVIWSATS----MKWIEIKMTELGVLTNP 87 (195)
T ss_pred CCCCcEEEEeCCCceEcccccCCCceEEeCCCHHHHHHHHHh-----CCEEEEEecCC----HHHHHHHHHHhcccCCc
Confidence 45678999999999998532 34999999999998 68899999543 46777665677765433
No 157
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=91.70 E-value=1.3 Score=38.38 Aligned_cols=85 Identities=20% Similarity=0.214 Sum_probs=54.9
Q ss_pred CCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCC-CcEEcch---------HHHHHHHHh
Q 044580 69 GNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILP-CQVVQGH---------SPFKQLFNR 138 (269)
Q Consensus 69 G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~-~qVi~s~---------tp~~~L~~~ 138 (269)
...++||+.++|+.| ++++.++||+. .+.....| +.+|+.--- +.|+.+. .++....++
T Consensus 86 ~~~~~~gv~~~L~~L-------~~~~~ivTn~~---~~~~~~~l-~~~~l~~~F~~~v~~~~~~~~~KP~p~~~~~a~~~ 154 (221)
T PRK10563 86 ELEPIAGANALLESI-------TVPMCVVSNGP---VSKMQHSL-GKTGMLHYFPDKLFSGYDIQRWKPDPALMFHAAEA 154 (221)
T ss_pred cCCcCCCHHHHHHHc-------CCCEEEEeCCc---HHHHHHHH-HhcChHHhCcceEeeHHhcCCCCCChHHHHHHHHH
Confidence 457899999999877 48999999974 33334445 567774222 2344431 344445555
Q ss_pred cCC--CeEEEEcCch-hHHHHhhcCceEe
Q 044580 139 FEN--EFIVAVGKGE-PAAVMAEYGFKNV 164 (269)
Q Consensus 139 ~~~--k~VlvvG~~~-~~~v~~~~Gf~~v 164 (269)
++- ..++++|+.. ..+.++.+|+..+
T Consensus 155 ~~~~p~~~l~igDs~~di~aA~~aG~~~i 183 (221)
T PRK10563 155 MNVNVENCILVDDSSAGAQSGIAAGMEVF 183 (221)
T ss_pred cCCCHHHeEEEeCcHhhHHHHHHCCCEEE
Confidence 542 4578889753 3567899999876
No 158
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=91.46 E-value=0.098 Score=45.08 Aligned_cols=21 Identities=19% Similarity=0.121 Sum_probs=17.0
Q ss_pred ccEEEEecCceeecCCccccc
Q 044580 55 SFGIAFDIDGVVLLGNTPIGG 75 (269)
Q Consensus 55 ~~a~lFDIDGVL~~G~~~iPg 75 (269)
+++++||+||||++....+..
T Consensus 1 ~k~viFD~DGTL~d~~~~~~~ 21 (224)
T TIGR02254 1 YKTLLFDLDDTILDFQAAEAL 21 (224)
T ss_pred CCEEEEcCcCcccccchHHHH
Confidence 468999999999998865443
No 159
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=91.29 E-value=1.2 Score=37.41 Aligned_cols=84 Identities=19% Similarity=0.158 Sum_probs=54.0
Q ss_pred CccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcch-------------HHHHHHH
Q 044580 70 NTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGH-------------SPFKQLF 136 (269)
Q Consensus 70 ~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~-------------tp~~~L~ 136 (269)
-.+.||+.++|+.|+ .+.+++||++ +......| +.+|+.---+.|+.+. .++....
T Consensus 83 ~~~~~g~~~~L~~L~-------~~~~i~Tn~~---~~~~~~~l-~~~gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~~~~ 151 (184)
T TIGR01993 83 LKPDPELRNLLLRLP-------GRKIIFTNGD---RAHARRAL-NRLGIEDCFDGIFCFDTANPDYLLPKPSPQAYEKAL 151 (184)
T ss_pred CCCCHHHHHHHHhCC-------CCEEEEeCCC---HHHHHHHH-HHcCcHhhhCeEEEeecccCccCCCCCCHHHHHHHH
Confidence 458899999998875 3588999986 33444455 5778742224555431 2344445
Q ss_pred HhcC--CCeEEEEcCch-hHHHHhhcCceEe
Q 044580 137 NRFE--NEFIVAVGKGE-PAAVMAEYGFKNV 164 (269)
Q Consensus 137 ~~~~--~k~VlvvG~~~-~~~v~~~~Gf~~v 164 (269)
++++ ...++++|+.. ..+.++.+|++.+
T Consensus 152 ~~~~~~~~~~l~vgD~~~di~aA~~~G~~~i 182 (184)
T TIGR01993 152 REAGVDPERAIFFDDSARNIAAAKALGMKTV 182 (184)
T ss_pred HHhCCCccceEEEeCCHHHHHHHHHcCCEEe
Confidence 5553 34578888753 3567899998864
No 160
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=91.27 E-value=0.17 Score=54.98 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=18.9
Q ss_pred CCCccEEEEecCceeecCCccccc
Q 044580 52 QRPSFGIAFDIDGVVLLGNTPIGG 75 (269)
Q Consensus 52 ~~~~~a~lFDIDGVL~~G~~~iPg 75 (269)
-+++++|+||+||||++....+-.
T Consensus 72 ~~~ikaVIFDlDGTLiDS~~~~~~ 95 (1057)
T PLN02919 72 WGKVSAVLFDMDGVLCNSEEPSRR 95 (1057)
T ss_pred CCCCCEEEECCCCCeEeChHHHHH
Confidence 346889999999999998754433
No 161
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=90.97 E-value=0.12 Score=44.31 Aligned_cols=16 Identities=25% Similarity=0.453 Sum_probs=14.0
Q ss_pred EEEEecCceeecCCcc
Q 044580 57 GIAFDIDGVVLLGNTP 72 (269)
Q Consensus 57 a~lFDIDGVL~~G~~~ 72 (269)
+++||+||||++....
T Consensus 2 ~viFD~DGTLiDs~~~ 17 (197)
T TIGR01548 2 ALVLDMDGVMADVSQS 17 (197)
T ss_pred ceEEecCceEEechHH
Confidence 7899999999998744
No 162
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=90.68 E-value=1.4 Score=46.03 Aligned_cols=98 Identities=17% Similarity=0.216 Sum_probs=62.5
Q ss_pred ccEEEEecCce----eecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcc--
Q 044580 55 SFGIAFDIDGV----VLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQG-- 128 (269)
Q Consensus 55 ~~a~lFDIDGV----L~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s-- 128 (269)
...+.+=.||+ +.-.+.+-|+|.++++.|++ .|++++++|+.. ...++.+.+.+|++...+ +...
T Consensus 548 ~~~v~va~~~~~~g~i~l~d~~r~~a~~~i~~L~~----~gi~~~llTGd~----~~~a~~ia~~lgi~~~~~-~~p~~K 618 (741)
T PRK11033 548 KTVVLVLRNDDVLGLIALQDTLRADARQAISELKA----LGIKGVMLTGDN----PRAAAAIAGELGIDFRAG-LLPEDK 618 (741)
T ss_pred CEEEEEEECCEEEEEEEEecCCchhHHHHHHHHHH----CCCEEEEEcCCC----HHHHHHHHHHcCCCeecC-CCHHHH
Confidence 44566655664 44677899999999999998 599999999864 344556667889863211 1001
Q ss_pred hHHHHHHHHhcCCCeEEEEcCc-hhHHHHhhcCceEe
Q 044580 129 HSPFKQLFNRFENEFIVAVGKG-EPAAVMAEYGFKNV 164 (269)
Q Consensus 129 ~tp~~~L~~~~~~k~VlvvG~~-~~~~v~~~~Gf~~v 164 (269)
...++.+. ....|.++|++ .+...++.++.-..
T Consensus 619 ~~~v~~l~---~~~~v~mvGDgiNDapAl~~A~vgia 652 (741)
T PRK11033 619 VKAVTELN---QHAPLAMVGDGINDAPAMKAASIGIA 652 (741)
T ss_pred HHHHHHHh---cCCCEEEEECCHHhHHHHHhCCeeEE
Confidence 12233333 22478899987 44566777764443
No 163
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=90.21 E-value=1.7 Score=36.41 Aligned_cols=97 Identities=13% Similarity=0.223 Sum_probs=61.5
Q ss_pred cEEEEecCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEc-chHHHHH
Q 044580 56 FGIAFDIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQ-GHSPFKQ 134 (269)
Q Consensus 56 ~a~lFDIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~-s~tp~~~ 134 (269)
...+-|+++|+..|+..++...+.|+.|.+ . +.+++-|.. +..-..+|.+..|+++ +.|+- ++.-++.
T Consensus 15 d~~~~~v~~tiatgGklf~ev~e~iqeL~d----~-V~i~IASgD----r~gsl~~lae~~gi~~--~rv~a~a~~e~K~ 83 (152)
T COG4087 15 DSKAGKVLYTIATGGKLFSEVSETIQELHD----M-VDIYIASGD----RKGSLVQLAEFVGIPV--ERVFAGADPEMKA 83 (152)
T ss_pred eeecceEEEEEccCcEEcHhhHHHHHHHHH----h-heEEEecCC----cchHHHHHHHHcCCce--eeeecccCHHHHH
Confidence 445668999999999999999999999998 3 555554433 2233455657788664 56665 5433332
Q ss_pred -HHHhc--CCCeEEEEcCch-hHHHHhhcCceE
Q 044580 135 -LFNRF--ENEFIVAVGKGE-PAAVMAEYGFKN 163 (269)
Q Consensus 135 -L~~~~--~~k~VlvvG~~~-~~~v~~~~Gf~~ 163 (269)
+.... +.++|..+|.+. ..-.|+++..-.
T Consensus 84 ~ii~eLkk~~~k~vmVGnGaND~laLr~ADlGI 116 (152)
T COG4087 84 KIIRELKKRYEKVVMVGNGANDILALREADLGI 116 (152)
T ss_pred HHHHHhcCCCcEEEEecCCcchHHHhhhcccce
Confidence 22222 345678889864 334455554443
No 164
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=90.20 E-value=2 Score=37.53 Aligned_cols=29 Identities=14% Similarity=0.212 Sum_probs=25.8
Q ss_pred CCccccchHHHHHHHHhhcCCCCceEEEEeCCC
Q 044580 69 GNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGG 101 (269)
Q Consensus 69 G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~ 101 (269)
...+.||+.+.|+.|++ .|+|++++||+.
T Consensus 72 ~~~l~pG~~e~l~~l~~----~g~~~~IvS~~~ 100 (219)
T PRK09552 72 TAEIREGFHEFVQFVKE----NNIPFYVVSGGM 100 (219)
T ss_pred CCCcCcCHHHHHHHHHH----cCCeEEEECCCc
Confidence 34689999999999998 499999999986
No 165
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=90.12 E-value=1.9 Score=47.00 Aligned_cols=86 Identities=9% Similarity=0.086 Sum_probs=58.6
Q ss_pred ccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCC-CCcEEcch---------HHHHHHHHhcC
Q 044580 71 TPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNIL-PCQVVQGH---------SPFKQLFNRFE 140 (269)
Q Consensus 71 ~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~-~~qVi~s~---------tp~~~L~~~~~ 140 (269)
.++||+.+.|+.|++ .|+++.++||+. +......| +.+|+... -+.|+.+. .++....++++
T Consensus 161 ~~~pG~~elL~~Lk~----~G~~l~IvSn~~---~~~~~~~L-~~~gl~~~~Fd~iv~~~~~~~~KP~Pe~~~~a~~~lg 232 (1057)
T PLN02919 161 IGFPGALELITQCKN----KGLKVAVASSAD---RIKVDANL-AAAGLPLSMFDAIVSADAFENLKPAPDIFLAAAKILG 232 (1057)
T ss_pred ccCccHHHHHHHHHh----CCCeEEEEeCCc---HHHHHHHH-HHcCCChhHCCEEEECcccccCCCCHHHHHHHHHHcC
Confidence 478999999999998 499999999974 33334445 57887521 24555431 34455556654
Q ss_pred --CCeEEEEcCc-hhHHHHhhcCceEe
Q 044580 141 --NEFIVAVGKG-EPAAVMAEYGFKNV 164 (269)
Q Consensus 141 --~k~VlvvG~~-~~~~v~~~~Gf~~v 164 (269)
.+.++++|+. ...+.++.+|++.+
T Consensus 233 v~p~e~v~IgDs~~Di~AA~~aGm~~I 259 (1057)
T PLN02919 233 VPTSECVVIEDALAGVQAARAAGMRCI 259 (1057)
T ss_pred cCcccEEEEcCCHHHHHHHHHcCCEEE
Confidence 3467888875 34577899998765
No 166
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=90.09 E-value=0.91 Score=47.42 Aligned_cols=87 Identities=26% Similarity=0.418 Sum_probs=61.3
Q ss_pred EEEEecCc----eeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcchHH-
Q 044580 57 GIAFDIDG----VVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGHSP- 131 (269)
Q Consensus 57 a~lFDIDG----VL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~tp- 131 (269)
.+++-+|| ++.-.+.+=|+|.++++.|++ .|+.+++||... +..++.+.+++|++ +++....|
T Consensus 519 ~v~va~dg~~~g~i~~~D~~R~~a~~aI~~L~~----~Gi~~~mLTGDn----~~~A~~iA~~lGId----~v~AellPe 586 (713)
T COG2217 519 VVFVAVDGKLVGVIALADELRPDAKEAIAALKA----LGIKVVMLTGDN----RRTAEAIAKELGID----EVRAELLPE 586 (713)
T ss_pred EEEEEECCEEEEEEEEeCCCChhHHHHHHHHHH----CCCeEEEEcCCC----HHHHHHHHHHcChH----hheccCCcH
Confidence 47888888 455678899999999999999 599999999764 34566666788984 55543333
Q ss_pred -----HHHHHHhcCCCeEEEEcCc-hhHHHHh
Q 044580 132 -----FKQLFNRFENEFIVAVGKG-EPAAVMA 157 (269)
Q Consensus 132 -----~~~L~~~~~~k~VlvvG~~-~~~~v~~ 157 (269)
.+.|.+ .+++|.+||++ ++.-.|.
T Consensus 587 dK~~~V~~l~~--~g~~VamVGDGINDAPALA 616 (713)
T COG2217 587 DKAEIVRELQA--EGRKVAMVGDGINDAPALA 616 (713)
T ss_pred HHHHHHHHHHh--cCCEEEEEeCCchhHHHHh
Confidence 333432 34689999987 3443433
No 167
>PRK09449 dUMP phosphatase; Provisional
Probab=89.93 E-value=0.22 Score=43.32 Aligned_cols=27 Identities=7% Similarity=0.118 Sum_probs=19.2
Q ss_pred HHHhhcC----ceEecCccccccccccCCCC
Q 044580 154 AVMAEYG----FKNVLSIDEYASYFDGIDPL 180 (269)
Q Consensus 154 ~v~~~~G----f~~v~t~~d~~~~~p~ldp~ 180 (269)
..++.+| |..+++.+++...+|..+++
T Consensus 126 ~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~~ 156 (224)
T PRK09449 126 VRLERTGLRDYFDLLVISEQVGVAKPDVAIF 156 (224)
T ss_pred HHHHhCChHHHcCEEEEECccCCCCCCHHHH
Confidence 4577777 66777778877777766664
No 168
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=89.93 E-value=0.11 Score=43.26 Aligned_cols=21 Identities=14% Similarity=0.259 Sum_probs=16.0
Q ss_pred EEEEecCceeecCCccccchH
Q 044580 57 GIAFDIDGVVLLGNTPIGGSN 77 (269)
Q Consensus 57 a~lFDIDGVL~~G~~~iPgA~ 77 (269)
+++||+||||++....+-.+.
T Consensus 1 ~viFD~DGTL~D~~~~~~~~~ 21 (175)
T TIGR01493 1 AMVFDVYGTLVDVHGGVRACL 21 (175)
T ss_pred CeEEecCCcCcccHHHHHHHH
Confidence 589999999999875444443
No 169
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=89.87 E-value=0.15 Score=46.51 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=18.4
Q ss_pred CccEEEEecCceeecCCccccch
Q 044580 54 PSFGIAFDIDGVVLLGNTPIGGS 76 (269)
Q Consensus 54 ~~~a~lFDIDGVL~~G~~~iPgA 76 (269)
-+++++||+||||++....+-.+
T Consensus 12 ~~k~viFDlDGTL~Ds~~~~~~a 34 (272)
T PRK13223 12 LPRLVMFDLDGTLVDSVPDLAAA 34 (272)
T ss_pred cCCEEEEcCCCccccCHHHHHHH
Confidence 56799999999999987654443
No 170
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=89.77 E-value=3.4 Score=36.57 Aligned_cols=91 Identities=13% Similarity=0.198 Sum_probs=64.1
Q ss_pred CccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCC-------CCcEEcc---------h---H
Q 044580 70 NTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNIL-------PCQVVQG---------H---S 130 (269)
Q Consensus 70 ~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~-------~~qVi~s---------~---t 130 (269)
....|||.+.++.+++ .|..++++|-+ ....++.+.+.+|++-- .+-++++ . .
T Consensus 76 ~~l~~ga~elv~~lk~----~G~~v~iiSgg----~~~lv~~ia~~lg~d~~~an~l~~~dG~ltG~v~g~~~~~~~K~~ 147 (212)
T COG0560 76 LRLTPGAEELVAALKA----AGAKVVIISGG----FTFLVEPIAERLGIDYVVANELEIDDGKLTGRVVGPICDGEGKAK 147 (212)
T ss_pred CcCCccHHHHHHHHHH----CCCEEEEEcCC----hHHHHHHHHHHhCCchheeeEEEEeCCEEeceeeeeecCcchHHH
Confidence 3568999999999999 59999999965 44788899899999621 1123332 1 3
Q ss_pred HHHHHHHhcCC--CeEEEEcCc-hhHHHHhhcCceEecCcc
Q 044580 131 PFKQLFNRFEN--EFIVAVGKG-EPAAVMAEYGFKNVLSID 168 (269)
Q Consensus 131 p~~~L~~~~~~--k~VlvvG~~-~~~~v~~~~Gf~~v~t~~ 168 (269)
.++.+.++++- +.++.+|++ ++...++.+|+..++.+.
T Consensus 148 ~l~~~~~~~g~~~~~~~a~gDs~nDlpml~~ag~~ia~n~~ 188 (212)
T COG0560 148 ALRELAAELGIPLEETVAYGDSANDLPMLEAAGLPIAVNPK 188 (212)
T ss_pred HHHHHHHHcCCCHHHeEEEcCchhhHHHHHhCCCCeEeCcC
Confidence 34445555543 367888876 456778999988887654
No 171
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=89.57 E-value=1.9 Score=36.76 Aligned_cols=72 Identities=15% Similarity=0.073 Sum_probs=46.3
Q ss_pred ccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcch--------HHHHHHHHhcC--
Q 044580 71 TPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGH--------SPFKQLFNRFE-- 140 (269)
Q Consensus 71 ~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~--------tp~~~L~~~~~-- 140 (269)
.+.+++.++|+.|++ .|+++.++||+. +......| +.+|+.--.+.++.+. .++....++.+
T Consensus 106 ~~~~~~~~~L~~l~~----~g~~~~i~T~~~---~~~~~~~l-~~~gl~~~f~~~~~~~~~~~KP~p~~~~~~~~~~~~~ 177 (197)
T TIGR01548 106 ETLLTPKGLLRELHR----APKGMAVVTGRP---RKDAAKFL-TTHGLEILFPVQIWMEDCPPKPNPEPLILAAKALGVE 177 (197)
T ss_pred ccccCHHHHHHHHHH----cCCcEEEECCCC---HHHHHHHH-HHcCchhhCCEEEeecCCCCCcCHHHHHHHHHHhCcC
Confidence 467788999999987 499999999984 44444445 6888863334444421 23333444443
Q ss_pred CCeEEEEcCc
Q 044580 141 NEFIVAVGKG 150 (269)
Q Consensus 141 ~k~VlvvG~~ 150 (269)
...+++||+.
T Consensus 178 ~~~~i~vGD~ 187 (197)
T TIGR01548 178 ACHAAMVGDT 187 (197)
T ss_pred cccEEEEeCC
Confidence 3467888864
No 172
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=89.35 E-value=0.2 Score=42.26 Aligned_cols=21 Identities=19% Similarity=0.007 Sum_probs=16.1
Q ss_pred cEEEEecCceeecCCccccch
Q 044580 56 FGIAFDIDGVVLLGNTPIGGS 76 (269)
Q Consensus 56 ~a~lFDIDGVL~~G~~~iPgA 76 (269)
++++||+||||++....+-.+
T Consensus 1 ~~viFDlDGTL~ds~~~~~~~ 21 (184)
T TIGR01993 1 DVWFFDLDNTLYPHSAGIFLQ 21 (184)
T ss_pred CeEEEeCCCCCCCCcccHHHH
Confidence 479999999999886544333
No 173
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=88.93 E-value=2.6 Score=43.83 Aligned_cols=92 Identities=21% Similarity=0.381 Sum_probs=62.9
Q ss_pred cCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcchHHHHHH--HHh-
Q 044580 62 IDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGHSPFKQL--FNR- 138 (269)
Q Consensus 62 IDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~tp~~~L--~~~- 138 (269)
+=|++.-.+.+=|++.++++.|++ .|+.++++|.... ..++.+.+.+|++ +++...+|-..+ .+.
T Consensus 437 ~lG~i~l~D~~Rp~a~eaI~~l~~----~Gi~v~miTGD~~----~ta~~iA~~lGI~----~v~a~~~PedK~~~v~~l 504 (675)
T TIGR01497 437 IYGVIYLKDIVKGGIKERFAQLRK----MGIKTIMITGDNR----LTAAAIAAEAGVD----DFIAEATPEDKIALIRQE 504 (675)
T ss_pred EEEEEEecccchhHHHHHHHHHHH----CCCEEEEEcCCCH----HHHHHHHHHcCCC----EEEcCCCHHHHHHHHHHH
Confidence 345666777889999999999998 5999999997642 3455566788885 455433443321 111
Q ss_pred -cCCCeEEEEcCc-hhHHHHhhcCceEec
Q 044580 139 -FENEFIVAVGKG-EPAAVMAEYGFKNVL 165 (269)
Q Consensus 139 -~~~k~VlvvG~~-~~~~v~~~~Gf~~v~ 165 (269)
-.++.|.++|++ .+...|+.++.-...
T Consensus 505 q~~g~~VamvGDG~NDapAL~~AdvGiAm 533 (675)
T TIGR01497 505 QAEGKLVAMTGDGTNDAPALAQADVGVAM 533 (675)
T ss_pred HHcCCeEEEECCCcchHHHHHhCCEeEEe
Confidence 134579999987 556778888766554
No 174
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=88.93 E-value=0.15 Score=43.50 Aligned_cols=16 Identities=19% Similarity=0.374 Sum_probs=14.2
Q ss_pred cEEEEecCceeecCCc
Q 044580 56 FGIAFDIDGVVLLGNT 71 (269)
Q Consensus 56 ~a~lFDIDGVL~~G~~ 71 (269)
++++||+||||++...
T Consensus 2 k~viFD~dgTLiD~~~ 17 (198)
T TIGR01428 2 KALVFDVYGTLFDVHS 17 (198)
T ss_pred cEEEEeCCCcCccHHH
Confidence 5899999999999774
No 175
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=88.77 E-value=0.6 Score=49.73 Aligned_cols=53 Identities=17% Similarity=0.190 Sum_probs=39.4
Q ss_pred CccEEEEecCceeecCC----ccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHH
Q 044580 54 PSFGIAFDIDGVVLLGN----TPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATEL 112 (269)
Q Consensus 54 ~~~a~lFDIDGVL~~G~----~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~L 112 (269)
+..+|++|+||||.... .|-|+..++|+.|... .+..|+++|.. +.+...+-+
T Consensus 595 ~~rlI~LDyDGTLlp~~~~~~~p~~~~~~~L~~L~~d---~g~~VaIvSGR---~~~~L~~~f 651 (854)
T PLN02205 595 TTRAILLDYDGTLMPQASIDKSPSSKSIDILNTLCRD---KNNMVFIVSAR---SRKTLADWF 651 (854)
T ss_pred cCeEEEEecCCcccCCccccCCCCHHHHHHHHHHHhc---CCCEEEEEeCC---CHHHHHHHh
Confidence 56899999999999543 4567899999998543 58899999964 455444433
No 176
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=88.63 E-value=2.4 Score=39.40 Aligned_cols=42 Identities=24% Similarity=0.290 Sum_probs=31.6
Q ss_pred CCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCC
Q 044580 69 GNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGV 118 (269)
Q Consensus 69 G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi 118 (269)
+-.+.||+.++++.|++ .|+|++++|+|.+. .++.+-+.+|+
T Consensus 119 ~l~l~pG~~efl~~L~~----~GIpv~IvS~G~~~----~Ie~vL~~lgl 160 (277)
T TIGR01544 119 DVMLKDGYENFFDKLQQ----HSIPVFIFSAGIGN----VLEEVLRQAGV 160 (277)
T ss_pred CCccCcCHHHHHHHHHH----CCCcEEEEeCCcHH----HHHHHHHHcCC
Confidence 45689999999999998 49999999987642 23333346776
No 177
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=88.51 E-value=0.15 Score=41.62 Aligned_cols=20 Identities=35% Similarity=0.541 Sum_probs=15.2
Q ss_pred EEEEecCceeecCCccccch
Q 044580 57 GIAFDIDGVVLLGNTPIGGS 76 (269)
Q Consensus 57 a~lFDIDGVL~~G~~~iPgA 76 (269)
+++||+||||++....+..|
T Consensus 1 ~iifD~DGTL~d~~~~~~~~ 20 (154)
T TIGR01549 1 AILFDIDGTLVDSSFAIRRA 20 (154)
T ss_pred CeEecCCCcccccHHHHHHH
Confidence 48999999999987444333
No 178
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=88.25 E-value=1.9 Score=41.92 Aligned_cols=55 Identities=16% Similarity=0.083 Sum_probs=42.5
Q ss_pred CccEEEEecCceeecCCccccc----hHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHH
Q 044580 54 PSFGIAFDIDGVVLLGNTPIGG----SNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELS 113 (269)
Q Consensus 54 ~~~a~lFDIDGVL~~G~~~iPg----A~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls 113 (269)
.-+.+-||-|+|||..+.-+.. ...-++.|+. |+.+-++|=.|--..+.+-++|.
T Consensus 146 ~L~LvTFDgDvTLY~DG~sl~~d~pvi~~ii~LL~~-----gv~VgIVTAAGY~~a~kY~~RL~ 204 (408)
T PF06437_consen 146 GLKLVTFDGDVTLYEDGASLEPDNPVIPRIIKLLRR-----GVKVGIVTAAGYPGAEKYEERLH 204 (408)
T ss_pred CceEEEEcCCcccccCCCCCCCCchHHHHHHHHHhc-----CCeEEEEeCCCCCChHHHHHHHH
Confidence 6789999999999987776633 3344555554 99999999988766777777775
No 179
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=88.14 E-value=3.2 Score=36.66 Aligned_cols=90 Identities=22% Similarity=0.195 Sum_probs=57.2
Q ss_pred cCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcc------h-HHHHHH--HHh
Q 044580 68 LGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQG------H-SPFKQL--FNR 138 (269)
Q Consensus 68 ~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s------~-tp~~~L--~~~ 138 (269)
.+-.++||+.++|+.|++ .|++++..||+. +......| +.+|+.-..+.++++ . .|--|| +++
T Consensus 83 ~~~~~~pGv~~~l~~L~~----~~i~~avaS~s~---~~~~~~~L-~~~gl~~~f~~~v~~~dv~~~KP~Pd~yL~Aa~~ 154 (221)
T COG0637 83 EGLKPIPGVVELLEQLKA----RGIPLAVASSSP---RRAAERVL-ARLGLLDYFDVIVTADDVARGKPAPDIYLLAAER 154 (221)
T ss_pred cCCCCCccHHHHHHHHHh----cCCcEEEecCCh---HHHHHHHH-HHccChhhcchhccHHHHhcCCCCCHHHHHHHHH
Confidence 345799999999999998 479999999874 22333334 467765333444442 1 232233 344
Q ss_pred --cCCCeEEEEcCchh-HHHHhhcCceEec
Q 044580 139 --FENEFIVAVGKGEP-AAVMAEYGFKNVL 165 (269)
Q Consensus 139 --~~~k~VlvvG~~~~-~~v~~~~Gf~~v~ 165 (269)
.....|+|+.+... .+.++.+|+..+.
T Consensus 155 Lgv~P~~CvviEDs~~Gi~Aa~aAGm~vv~ 184 (221)
T COG0637 155 LGVDPEECVVVEDSPAGIQAAKAAGMRVVG 184 (221)
T ss_pred cCCChHHeEEEecchhHHHHHHHCCCEEEE
Confidence 34456777776432 4668999999875
No 180
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=87.99 E-value=0.21 Score=41.44 Aligned_cols=16 Identities=38% Similarity=0.702 Sum_probs=13.6
Q ss_pred EEEEecCceeecCCcc
Q 044580 57 GIAFDIDGVVLLGNTP 72 (269)
Q Consensus 57 a~lFDIDGVL~~G~~~ 72 (269)
+++||+||||+++...
T Consensus 1 ~vlFDlDgtLv~~~~~ 16 (183)
T TIGR01509 1 AILFDLDGVLVDTSSA 16 (183)
T ss_pred CeeeccCCceechHHH
Confidence 5899999999998643
No 181
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=87.82 E-value=0.21 Score=49.03 Aligned_cols=31 Identities=19% Similarity=0.293 Sum_probs=22.5
Q ss_pred CCccEEEEecCceeecCCccccchH-HHHHHH
Q 044580 53 RPSFGIAFDIDGVVLLGNTPIGGSN-KALKRL 83 (269)
Q Consensus 53 ~~~~a~lFDIDGVL~~G~~~iPgA~-eal~~L 83 (269)
+.+++++||+||||++....+-.+. ++++.+
T Consensus 239 ~m~k~vIFDlDGTLiDs~~~~~~a~~~~~~~~ 270 (459)
T PRK06698 239 EMLQALIFDMDGTLFQTDKILELSLDDTFDHL 270 (459)
T ss_pred HhhhheeEccCCceecchhHHHHHHHHHHHHH
Confidence 4568999999999999987655544 334433
No 182
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=87.70 E-value=0.94 Score=39.74 Aligned_cols=96 Identities=16% Similarity=0.100 Sum_probs=45.7
Q ss_pred cEEEEecCceeecCCccccchHHHHHHHHhhcCCCCc-eEEEEeCCCCCCHHHHHHHHH--HHcCCCCCC-CcEEc----
Q 044580 56 FGIAFDIDGVVLLGNTPIGGSNKALKRLYQHSGDLRI-PYIFLTNGGGFRESKRATELS--KLLGVNILP-CQVVQ---- 127 (269)
Q Consensus 56 ~a~lFDIDGVL~~G~~~iPgA~eal~~L~~~~~~~gi-p~iflTN~~~~se~~~a~~Ls--~~lGi~i~~-~qVi~---- 127 (269)
..++||+||||+.+ .....+.. .|+ +..+.+++-..-++....++. +..|++.+. ++++.
T Consensus 2 ~la~FDlD~TLi~~--------~w~~~~~~----~g~~~~~~~~~~~~~~~~~~~~r~~ll~~~g~~~~~i~~~~~~i~l 69 (203)
T TIGR02137 2 EIACLDLEGVLVPE--------IWIAFAEK----TGIDALKATTRDIPDYDVLMKQRLRILDEHGLKLGDIQEVIATLKP 69 (203)
T ss_pred eEEEEeCCcccHHH--------HHHHHHHH----cCCcHHHHHhcCCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHhCCC
Confidence 35899999999965 22333333 232 223344443222333333332 113665431 12221
Q ss_pred --c-hHHHHHHHHhcCCCeEEEEcCchh--HHHHhhcCceEec
Q 044580 128 --G-HSPFKQLFNRFENEFIVAVGKGEP--AAVMAEYGFKNVL 165 (269)
Q Consensus 128 --s-~tp~~~L~~~~~~k~VlvvG~~~~--~~v~~~~Gf~~v~ 165 (269)
. ...+..+.+. .+.+++.|+... ..+++.+|+..+.
T Consensus 70 ~pga~ell~~lk~~--~~~~IVS~~~~~~~~~il~~lgi~~~~ 110 (203)
T TIGR02137 70 LEGAVEFVDWLRER--FQVVILSDTFYEFSQPLMRQLGFPTLL 110 (203)
T ss_pred CccHHHHHHHHHhC--CeEEEEeCChHHHHHHHHHHcCCchhh
Confidence 1 1334444432 355555555332 4578999987654
No 183
>PRK10671 copA copper exporting ATPase; Provisional
Probab=87.67 E-value=3.3 Score=43.87 Aligned_cols=98 Identities=21% Similarity=0.342 Sum_probs=64.0
Q ss_pred ccEEEEecCce----eecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcchH
Q 044580 55 SFGIAFDIDGV----VLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGHS 130 (269)
Q Consensus 55 ~~a~lFDIDGV----L~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~t 130 (269)
...+.+-+||. +.....+.|++.++++.|++ .|++++++|+.. + ..++.+.+.+|+. +++....
T Consensus 630 ~~~v~va~~~~~~g~~~l~d~~r~~a~~~i~~L~~----~gi~v~~~Tgd~---~-~~a~~ia~~lgi~----~~~~~~~ 697 (834)
T PRK10671 630 ATPVLLAVDGKAAALLAIRDPLRSDSVAALQRLHK----AGYRLVMLTGDN---P-TTANAIAKEAGID----EVIAGVL 697 (834)
T ss_pred CeEEEEEECCEEEEEEEccCcchhhHHHHHHHHHH----CCCeEEEEcCCC---H-HHHHHHHHHcCCC----EEEeCCC
Confidence 34466666765 44677889999999999998 599999999864 2 3444555678885 3443222
Q ss_pred HHHH--HHHhc--CCCeEEEEcCc-hhHHHHhhcCceEe
Q 044580 131 PFKQ--LFNRF--ENEFIVAVGKG-EPAAVMAEYGFKNV 164 (269)
Q Consensus 131 p~~~--L~~~~--~~k~VlvvG~~-~~~~v~~~~Gf~~v 164 (269)
|... ..+++ .+..|+++|++ .+...++.+|.-..
T Consensus 698 p~~K~~~i~~l~~~~~~v~~vGDg~nD~~al~~Agvgia 736 (834)
T PRK10671 698 PDGKAEAIKRLQSQGRQVAMVGDGINDAPALAQADVGIA 736 (834)
T ss_pred HHHHHHHHHHHhhcCCEEEEEeCCHHHHHHHHhCCeeEE
Confidence 2211 12222 24579999987 45677888887543
No 184
>PLN02580 trehalose-phosphatase
Probab=87.64 E-value=1.2 Score=43.32 Aligned_cols=51 Identities=14% Similarity=0.152 Sum_probs=37.6
Q ss_pred CccEEEEecCceeec------CCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHH
Q 044580 54 PSFGIAFDIDGVVLL------GNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATEL 112 (269)
Q Consensus 54 ~~~a~lFDIDGVL~~------G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~L 112 (269)
+..+++||.||||.. .-.+-|+..++|+.|.+ ..++++||. ++.++..+.+
T Consensus 118 k~~~LfLDyDGTLaPIv~~Pd~A~~s~~~~~aL~~La~-----~~~VAIVSG---R~~~~L~~~l 174 (384)
T PLN02580 118 KKIALFLDYDGTLSPIVDDPDRALMSDAMRSAVKNVAK-----YFPTAIISG---RSRDKVYELV 174 (384)
T ss_pred CCeEEEEecCCccCCCCCCcccccCCHHHHHHHHHHhh-----CCCEEEEeC---CCHHHHHHHh
Confidence 457889999999973 33467889999999987 358999985 5565544433
No 185
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=87.52 E-value=0.35 Score=40.97 Aligned_cols=30 Identities=23% Similarity=0.292 Sum_probs=23.5
Q ss_pred cEEEEecCceeecCCccc--cchHHHHHHHHh
Q 044580 56 FGIAFDIDGVVLLGNTPI--GGSNKALKRLYQ 85 (269)
Q Consensus 56 ~a~lFDIDGVL~~G~~~i--PgA~eal~~L~~ 85 (269)
++++||.||||+.+...+ ++..++++.+..
T Consensus 2 ~~i~fDktGTLt~~~~~v~~~~~~~~~~~~~~ 33 (215)
T PF00702_consen 2 DAICFDKTGTLTQGKMSVAPPSNEAALAIAAA 33 (215)
T ss_dssp SEEEEECCTTTBESHHEEESCSHHHHHHHHHH
T ss_pred eEEEEecCCCcccCeEEEEeccHHHHHHHHHH
Confidence 689999999999998888 666665555544
No 186
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=87.05 E-value=9.4 Score=31.02 Aligned_cols=94 Identities=16% Similarity=0.212 Sum_probs=61.7
Q ss_pred CceeecCCccc---------cchHHHHHHHHhhcCCCCceEEEEeCCCC----CCHHHHHHHHHHHcCCCCCCCcEEc--
Q 044580 63 DGVVLLGNTPI---------GGSNKALKRLYQHSGDLRIPYIFLTNGGG----FRESKRATELSKLLGVNILPCQVVQ-- 127 (269)
Q Consensus 63 DGVL~~G~~~i---------PgA~eal~~L~~~~~~~gip~iflTN~~~----~se~~~a~~Ls~~lGi~i~~~qVi~-- 127 (269)
|..++.|.... .....|++.+++ ...+.+++|.+.+ .+|.+..++.....|++ ++.|+.
T Consensus 1 d~IvVLG~~~~~~~~~~~~~~R~~~a~~l~~~----~~~~~ii~sGg~~~~~~~~ea~~m~~~l~~~gv~--~~~I~~e~ 74 (150)
T cd06259 1 DAIVVLGGGVNGDGPSPILAERLDAAAELYRA----GPAPKLIVSGGQGPGEGYSEAEAMARYLIELGVP--AEAILLED 74 (150)
T ss_pred CEEEEeCCccCCCCCChHHHHHHHHHHHHHHh----CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHcCCC--HHHeeecC
Confidence 44566666555 467788888877 3688999998874 56888888876788874 456664
Q ss_pred -chHH------HHHHHHhcCCCeEEEEcCch-h---HHHHhhcCce
Q 044580 128 -GHSP------FKQLFNRFENEFIVAVGKGE-P---AAVMAEYGFK 162 (269)
Q Consensus 128 -s~tp------~~~L~~~~~~k~VlvvG~~~-~---~~v~~~~Gf~ 162 (269)
|... ...+.++.+.++|++|.++- . ..+++.+|..
T Consensus 75 ~s~~T~ena~~~~~~~~~~~~~~i~lVTs~~H~~Ra~~~~~~~~~~ 120 (150)
T cd06259 75 RSTNTYENARFSAELLRERGIRSVLLVTSAYHMPRALLIFRKAGLD 120 (150)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEECCHHHHHHHHHHHHHcCCC
Confidence 2222 22344555557888888752 2 3457888863
No 187
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=86.79 E-value=3.7 Score=42.70 Aligned_cols=86 Identities=21% Similarity=0.337 Sum_probs=58.4
Q ss_pred CceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcchHHHHHH--HHh--
Q 044580 63 DGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGHSPFKQL--FNR-- 138 (269)
Q Consensus 63 DGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~tp~~~L--~~~-- 138 (269)
=|++.-.+.+=|++.++++.|++ .|+.++.+|.... .-++.+.+++|+. +++...+|-..+ .+.
T Consensus 433 lG~i~l~Dp~R~~a~e~I~~Lr~----~GI~vvMiTGDn~----~TA~aIA~elGI~----~v~A~~~PedK~~iV~~lQ 500 (673)
T PRK14010 433 LGVIYLKDVIKDGLVERFRELRE----MGIETVMCTGDNE----LTAATIAKEAGVD----RFVAECKPEDKINVIREEQ 500 (673)
T ss_pred EEEEEeecCCcHHHHHHHHHHHH----CCCeEEEECCCCH----HHHHHHHHHcCCc----eEEcCCCHHHHHHHHHHHH
Confidence 35556677888999999999998 6999999997643 3455566788885 455444454332 222
Q ss_pred cCCCeEEEEcCc-hhHHHHhhcC
Q 044580 139 FENEFIVAVGKG-EPAAVMAEYG 160 (269)
Q Consensus 139 ~~~k~VlvvG~~-~~~~v~~~~G 160 (269)
-.++.|.++|+| .+.-.|+.+.
T Consensus 501 ~~G~~VaMtGDGvNDAPALa~AD 523 (673)
T PRK14010 501 AKGHIVAMTGDGTNDAPALAEAN 523 (673)
T ss_pred hCCCEEEEECCChhhHHHHHhCC
Confidence 245678899987 4455566554
No 188
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=86.45 E-value=3.8 Score=43.80 Aligned_cols=93 Identities=18% Similarity=0.269 Sum_probs=59.7
Q ss_pred ceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcE------------------
Q 044580 64 GVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQV------------------ 125 (269)
Q Consensus 64 GVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qV------------------ 125 (269)
|.+.-.+.+-|++.++++.|++ .|++++++|+.... .+..+.+.+|+.-..+++
T Consensus 521 Gli~l~Dp~r~~~~~~i~~l~~----~Gi~v~miTGD~~~----tA~~ia~~~Gi~~~~~~~v~g~~l~~~~~~~l~~~~ 592 (884)
T TIGR01522 521 GLVGINDPPRPGVKEAVTTLIT----GGVRIIMITGDSQE----TAVSIARRLGMPSKTSQSVSGEKLDAMDDQQLSQIV 592 (884)
T ss_pred EEEeccCcchhHHHHHHHHHHH----CCCeEEEECCCCHH----HHHHHHHHcCCCCCCCceeEhHHhHhCCHHHHHHHh
Confidence 6677778899999999999998 59999999987533 344555778885332333
Q ss_pred -----EcchHHHHH--HHHh--cCCCeEEEEcCc-hhHHHHhhcCceEe
Q 044580 126 -----VQGHSPFKQ--LFNR--FENEFIVAVGKG-EPAAVMAEYGFKNV 164 (269)
Q Consensus 126 -----i~s~tp~~~--L~~~--~~~k~VlvvG~~-~~~~v~~~~Gf~~v 164 (269)
+-..+|-.. +.+. ..+..|.++|++ .+...++.++.-..
T Consensus 593 ~~~~Vfar~~P~~K~~iv~~lq~~g~~v~mvGDGvND~pAl~~AdVGia 641 (884)
T TIGR01522 593 PKVAVFARASPEHKMKIVKALQKRGDVVAMTGDGVNDAPALKLADIGVA 641 (884)
T ss_pred hcCeEEEECCHHHHHHHHHHHHHCCCEEEEECCCcccHHHHHhCCeeEe
Confidence 221223221 1111 135678899987 45566777654443
No 189
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=86.28 E-value=0.43 Score=40.34 Aligned_cols=19 Identities=26% Similarity=0.177 Sum_probs=15.9
Q ss_pred CccEEEEecCceeecCCcc
Q 044580 54 PSFGIAFDIDGVVLLGNTP 72 (269)
Q Consensus 54 ~~~a~lFDIDGVL~~G~~~ 72 (269)
..+.++||+||||+++...
T Consensus 3 ~~k~viFD~DGTLid~~~~ 21 (201)
T TIGR01491 3 MIKLIIFDLDGTLTDVMSS 21 (201)
T ss_pred cceEEEEeCCCCCcCCccH
Confidence 4678999999999997643
No 190
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=86.15 E-value=0.57 Score=40.44 Aligned_cols=38 Identities=11% Similarity=0.157 Sum_probs=25.9
Q ss_pred eEEEEcCch---hHHHHhhcC----ceEecCccccccccccCCCC
Q 044580 143 FIVAVGKGE---PAAVMAEYG----FKNVLSIDEYASYFDGIDPL 180 (269)
Q Consensus 143 ~VlvvG~~~---~~~v~~~~G----f~~v~t~~d~~~~~p~ldp~ 180 (269)
++.++-.+. ....++..| |..+++.+++...+|....|
T Consensus 116 ~l~ilTNg~~~~~~~~l~~~gl~~~Fd~v~~s~~~g~~KP~~~~f 160 (229)
T COG1011 116 KLGILTNGARPHQERKLRQLGLLDYFDAVFISEDVGVAKPDPEIF 160 (229)
T ss_pred cEEEEeCCChHHHHHHHHHcCChhhhheEEEecccccCCCCcHHH
Confidence 355555432 356788888 77788889988777765553
No 191
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=86.08 E-value=2.9 Score=43.54 Aligned_cols=87 Identities=20% Similarity=0.366 Sum_probs=59.6
Q ss_pred cCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcchHHHHHH--HHh-
Q 044580 62 IDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGHSPFKQL--FNR- 138 (269)
Q Consensus 62 IDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~tp~~~L--~~~- 138 (269)
+=|++.-.+.+=|++.++++.|++ .|+.++.+|..... -++.+.+++|++ +++-..+|-..+ .++
T Consensus 436 ~lG~i~l~D~~R~~~~eai~~Lr~----~GI~vvMiTGDn~~----TA~aIA~elGId----~v~A~~~PedK~~iV~~l 503 (679)
T PRK01122 436 VLGVIYLKDIVKPGIKERFAELRK----MGIKTVMITGDNPL----TAAAIAAEAGVD----DFLAEATPEDKLALIRQE 503 (679)
T ss_pred EEEEEEEeccCchhHHHHHHHHHH----CCCeEEEECCCCHH----HHHHHHHHcCCc----EEEccCCHHHHHHHHHHH
Confidence 446677778888999999999998 69999999976433 355566778884 565544554432 222
Q ss_pred -cCCCeEEEEcCc-hhHHHHhhcC
Q 044580 139 -FENEFIVAVGKG-EPAAVMAEYG 160 (269)
Q Consensus 139 -~~~k~VlvvG~~-~~~~v~~~~G 160 (269)
-.++.|.++|+| .+.-.|+.+.
T Consensus 504 Q~~G~~VaMtGDGvNDAPALa~AD 527 (679)
T PRK01122 504 QAEGRLVAMTGDGTNDAPALAQAD 527 (679)
T ss_pred HHcCCeEEEECCCcchHHHHHhCC
Confidence 245679999987 4455555553
No 192
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=85.32 E-value=0.55 Score=42.21 Aligned_cols=67 Identities=19% Similarity=0.153 Sum_probs=42.3
Q ss_pred CccEEEEecCceeecCCccccchHHHHHHHHhhcCCCCceE--EEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEE
Q 044580 54 PSFGIAFDIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPY--IFLTNGGGFRESKRATELSKLLGVNILPCQVV 126 (269)
Q Consensus 54 ~~~a~lFDIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~--iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi 126 (269)
...+.+||+||+|+.....+-.+. +.+-.. .|+++ .+..=--|+...+.++.+.+.++.+++.+++.
T Consensus 9 ~~~~~lfD~dG~lvdte~~y~~~~---~~~~~~---ygk~~~~~~~~~~mG~~~~eaa~~~~~~~~dp~s~ee~~ 77 (222)
T KOG2914|consen 9 KVSACLFDMDGTLVDTEDLYTEAW---QELLDR---YGKPYPWDVKVKSMGKRTSEAARLFVKKLPDPVSREEFN 77 (222)
T ss_pred ceeeEEEecCCcEEecHHHHHHHH---HHHHHH---cCCCChHHHHHHHcCCCHHHHHHHHHhhcCCCCCHHHHH
Confidence 567999999999998876654443 333443 34333 33333455666677776656677777665544
No 193
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=85.17 E-value=0.23 Score=40.15 Aligned_cols=20 Identities=30% Similarity=0.434 Sum_probs=15.1
Q ss_pred EEEecCceeecCCccccchH
Q 044580 58 IAFDIDGVVLLGNTPIGGSN 77 (269)
Q Consensus 58 ~lFDIDGVL~~G~~~iPgA~ 77 (269)
|+||+||||++....+..+.
T Consensus 1 iifD~dgtL~d~~~~~~~~~ 20 (176)
T PF13419_consen 1 IIFDLDGTLVDTDPAIFRAL 20 (176)
T ss_dssp EEEESBTTTEEHHHHHHHHH
T ss_pred cEEECCCCcEeCHHHHHHHH
Confidence 68999999998776444443
No 194
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=85.10 E-value=1.8 Score=45.76 Aligned_cols=53 Identities=9% Similarity=0.013 Sum_probs=38.9
Q ss_pred CccEEEEecCceeecC---------CccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHH
Q 044580 54 PSFGIAFDIDGVVLLG---------NTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATEL 112 (269)
Q Consensus 54 ~~~a~lFDIDGVL~~G---------~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~L 112 (269)
+..+|+||.||||..- ..|-|+..++|+.|.+. .+-.++++|. ++.+...+-+
T Consensus 506 ~~rll~LDyDGTL~~~~~~~~~p~~a~p~~~l~~~L~~L~~d---~~~~V~IvSG---R~~~~L~~~~ 567 (797)
T PLN03063 506 NNRLLILGFYGTLTEPRNSQIKEMDLGLHPELKETLKALCSD---PKTTVVVLSR---SGKDILDKNF 567 (797)
T ss_pred cCeEEEEecCccccCCCCCccccccCCCCHHHHHHHHHHHcC---CCCEEEEEeC---CCHHHHHHHh
Confidence 3579999999999943 12567888999999874 5678888884 5666555444
No 195
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=84.95 E-value=0.28 Score=42.16 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=15.9
Q ss_pred EEEecCceeecCCccccchHH
Q 044580 58 IAFDIDGVVLLGNTPIGGSNK 78 (269)
Q Consensus 58 ~lFDIDGVL~~G~~~iPgA~e 78 (269)
++||+||||++....+-.|..
T Consensus 1 iiFDlDGTL~Ds~~~~~~~~~ 21 (205)
T TIGR01454 1 VVFDLDGVLVDSFAVMREAFA 21 (205)
T ss_pred CeecCcCccccCHHHHHHHHH
Confidence 589999999998765544433
No 196
>PRK10494 hypothetical protein; Provisional
Probab=84.88 E-value=11 Score=34.48 Aligned_cols=89 Identities=8% Similarity=0.110 Sum_probs=55.6
Q ss_pred HHHHHHHHhhcCCCCceEEEEeCCCC----CCHHHHHHHHHHHcCCCCCCCcEEc---chHH---HHHHHHhcCCCeEEE
Q 044580 77 NKALKRLYQHSGDLRIPYIFLTNGGG----FRESKRATELSKLLGVNILPCQVVQ---GHSP---FKQLFNRFENEFIVA 146 (269)
Q Consensus 77 ~eal~~L~~~~~~~gip~iflTN~~~----~se~~~a~~Ls~~lGi~i~~~qVi~---s~tp---~~~L~~~~~~k~Vlv 146 (269)
.++++..++ ...+.+++|.+.+ .+|++..+++...+|++ ++.|+. |.++ +.+.++..+.+++++
T Consensus 110 ~~a~~L~r~----~~~~~ii~SGg~~~~~~~sEA~~~~~~l~~lGVp--~~~Ii~e~~s~nT~eNa~~~~~~~~~~~iiL 183 (259)
T PRK10494 110 TEGIRLWRA----NPGAKLIFTGGAAKTNTVSTAEVGARVAQSLGVP--REDIITLDLPKDTEEEAAAVKQAIGDAPFLL 183 (259)
T ss_pred HHHHHHHHh----CCCCEEEEECCCCCCCCCCHHHHHHHHHHHcCCC--HHHeeeCCCCCCHHHHHHHHHHHhCCCCEEE
Confidence 344555444 2467788887654 57888888877788876 445554 3322 223334445566777
Q ss_pred EcCc-hh---HHHHhhcCceEecCccccc
Q 044580 147 VGKG-EP---AAVMAEYGFKNVLSIDEYA 171 (269)
Q Consensus 147 vG~~-~~---~~v~~~~Gf~~v~t~~d~~ 171 (269)
|-+. .. ...++..|++.+-.+-|+.
T Consensus 184 VTsa~Hm~RA~~~f~~~Gl~v~p~Ptd~~ 212 (259)
T PRK10494 184 VTSASHLPRAMIFFQQEGLNPLPAPANQL 212 (259)
T ss_pred ECCHHHHHHHHHHHHHcCCceeecCCcce
Confidence 7654 22 3568999999887777765
No 197
>PRK11590 hypothetical protein; Provisional
Probab=84.54 E-value=0.53 Score=41.08 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=14.2
Q ss_pred CccEEEEecCceeecCC
Q 044580 54 PSFGIAFDIDGVVLLGN 70 (269)
Q Consensus 54 ~~~a~lFDIDGVL~~G~ 70 (269)
+.+.++||+||||+.+.
T Consensus 5 ~~k~~iFD~DGTL~~~d 21 (211)
T PRK11590 5 ERRVVFFDLDGTLHQQD 21 (211)
T ss_pred cceEEEEecCCCCcccc
Confidence 56799999999999544
No 198
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=84.44 E-value=3.2 Score=38.36 Aligned_cols=50 Identities=14% Similarity=0.004 Sum_probs=35.9
Q ss_pred CccEEEEecCceeecCC------ccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHH
Q 044580 54 PSFGIAFDIDGVVLLGN------TPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRA 109 (269)
Q Consensus 54 ~~~a~lFDIDGVL~~G~------~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a 109 (269)
...+|+||.||||.... .|-++..+.|+.|... .+.-++++|. ++.++.-
T Consensus 17 ~~~~~~lDyDGTl~~i~~~p~~a~~~~~l~~lL~~Las~---~~~~v~iiSG---R~~~~l~ 72 (266)
T COG1877 17 RKRLLFLDYDGTLTEIVPHPEAAVPDDRLLSLLQDLASD---PRNVVAIISG---RSLAELE 72 (266)
T ss_pred cceEEEEeccccccccccCccccCCCHHHHHHHHHHHhc---CCCeEEEEeC---CCHHHHH
Confidence 56799999999999744 3567788889999873 3444777774 5554433
No 199
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=84.40 E-value=5.2 Score=34.79 Aligned_cols=29 Identities=14% Similarity=0.209 Sum_probs=25.8
Q ss_pred CCccccchHHHHHHHHhhcCCCCceEEEEeCCC
Q 044580 69 GNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGG 101 (269)
Q Consensus 69 G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~ 101 (269)
...+.||+.++++.|++ .|+++.++||+.
T Consensus 68 ~~~l~pg~~e~l~~l~~----~g~~~~IvS~~~ 96 (214)
T TIGR03333 68 TAEIREGFREFVAFINE----HGIPFYVISGGM 96 (214)
T ss_pred cCcccccHHHHHHHHHH----CCCeEEEECCCc
Confidence 45789999999999998 499999999984
No 200
>PTZ00445 p36-lilke protein; Provisional
Probab=84.39 E-value=1.2 Score=40.07 Aligned_cols=45 Identities=22% Similarity=0.021 Sum_probs=34.9
Q ss_pred CCCccEEEEecCceeec-----CCcc-----------ccchHHHHHHHHhhcCCCCceEEEEeCC
Q 044580 52 QRPSFGIAFDIDGVVLL-----GNTP-----------IGGSNKALKRLYQHSGDLRIPYIFLTNG 100 (269)
Q Consensus 52 ~~~~~a~lFDIDGVL~~-----G~~~-----------iPgA~eal~~L~~~~~~~gip~iflTN~ 100 (269)
..+.+++++|+|-||+. ..++ -|.-.+.+++|++ .|++++++|=.
T Consensus 40 ~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~----~~I~v~VVTfS 100 (219)
T PTZ00445 40 ECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKN----SNIKISVVTFS 100 (219)
T ss_pred HcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHH----CCCeEEEEEcc
Confidence 35899999999999987 2233 4667777888877 59999999943
No 201
>KOG3107 consensus Predicted haloacid dehalogenase-like hydrolase (eyes absent) [General function prediction only]
Probab=83.85 E-value=5.3 Score=38.90 Aligned_cols=85 Identities=14% Similarity=0.227 Sum_probs=57.0
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcch-----HHHHHHHHhcCCCeEEE-EcCc-hhHHHHhhcCceE--e
Q 044580 94 YIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGH-----SPFKQLFNRFENEFIVA-VGKG-EPAAVMAEYGFKN--V 164 (269)
Q Consensus 94 ~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~-----tp~~~L~~~~~~k~Vlv-vG~~-~~~~v~~~~Gf~~--v 164 (269)
=|+|||.+-.+...++ |--.||--+.-|+|..++ ++++.++++|+.|.+|| ||++ +....++...+-. +
T Consensus 373 nVlvTttqLipalaKv--LL~gLg~~fpiENIYSa~kiGKescFerI~~RFg~K~~yvvIgdG~eee~aAK~ln~PfwrI 450 (468)
T KOG3107|consen 373 NVLVTTTQLIPALAKV--LLYGLGSSFPIENIYSATKIGKESCFERIQSRFGRKVVYVVIGDGVEEEQAAKALNMPFWRI 450 (468)
T ss_pred EEEEeccchhHHHHHH--HHHhcCCcccchhhhhhhhccHHHHHHHHHHHhCCceEEEEecCcHHHHHHHHhhCCceEee
Confidence 4899998766543333 323566666678998743 78888999999887775 5655 3345567766433 4
Q ss_pred cCccccccccccCCCC
Q 044580 165 LSIDEYASYFDGIDPL 180 (269)
Q Consensus 165 ~t~~d~~~~~p~ldp~ 180 (269)
..-.|+.+.++.++++
T Consensus 451 ~~h~Dl~~l~~aL~~~ 466 (468)
T KOG3107|consen 451 SSHSDLDALYSALELE 466 (468)
T ss_pred ccCccHHHHhhhcccc
Confidence 4446777888777764
No 202
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=82.97 E-value=7.2 Score=35.06 Aligned_cols=98 Identities=14% Similarity=0.153 Sum_probs=61.4
Q ss_pred ecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcC-CC--CC--CCcEEcch-HHHHHHH--Hh
Q 044580 67 LLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLG-VN--IL--PCQVVQGH-SPFKQLF--NR 138 (269)
Q Consensus 67 ~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lG-i~--i~--~~qVi~s~-tp~~~L~--~~ 138 (269)
+......|||.+-++.|+.+ |+|+.+.|+.+..+-+.+..++...+. +. +- -..|-.+. .|--+|. +.
T Consensus 88 ~~~~~~~PGa~kLv~~L~~~----gip~alat~s~~~~~~~k~~~~~~~~~~f~~~v~~d~~~v~~gKP~Pdi~l~A~~~ 163 (222)
T KOG2914|consen 88 FMNSILMPGAEKLVNHLKNN----GIPVALATSSTSASFELKISRHEDIFKNFSHVVLGDDPEVKNGKPDPDIYLKAAKR 163 (222)
T ss_pred ccccccCCcHHHHHHHHHhC----CCCeeEEecCCcccHHHHHHHhhHHHHhcCCCeecCCccccCCCCCchHHHHHHHh
Confidence 44556788999999999985 999999999988888777777643333 22 11 12222221 2222332 22
Q ss_pred ---cCCCeEEEEcCc-hhHHHHhhcCceEecCcc
Q 044580 139 ---FENEFIVAVGKG-EPAAVMAEYGFKNVLSID 168 (269)
Q Consensus 139 ---~~~k~VlvvG~~-~~~~v~~~~Gf~~v~t~~ 168 (269)
.+..+++|.... .-.+.+.++|.+.+..++
T Consensus 164 l~~~~~~k~lVfeds~~Gv~aa~aagm~vi~v~~ 197 (222)
T KOG2914|consen 164 LGVPPPSKCLVFEDSPVGVQAAKAAGMQVVGVAT 197 (222)
T ss_pred cCCCCccceEEECCCHHHHHHHHhcCCeEEEecC
Confidence 332455655543 235778999999987655
No 203
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=82.59 E-value=2.7 Score=36.04 Aligned_cols=48 Identities=19% Similarity=0.199 Sum_probs=32.0
Q ss_pred eecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCC----CHHHHHHHHHHHcC
Q 044580 66 VLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGF----RESKRATELSKLLG 117 (269)
Q Consensus 66 L~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~----se~~~a~~Ls~~lG 117 (269)
++.+-.|+|||.|+++.|.+ .|-..+++|-.... +.++..+=|.+.+|
T Consensus 68 ~f~~l~p~~gA~e~l~~L~~----~g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~ 119 (191)
T PF06941_consen 68 FFSNLPPIPGAVEALKKLRD----KGHEIVIITARPPEFPDHSAEEKREWLERHFP 119 (191)
T ss_dssp TTTT--B-TTHHHHHHHHHT----STTEEEEEEE-SSSSGCCCHHHHHHHHHHHHT
T ss_pred hhcCCCccHHHHHHHHHHHH----cCCcEEEEEecCccccchHHHHHHHHHHHHcC
Confidence 67788999999999999998 46566777755544 45666666765554
No 204
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=81.04 E-value=4.1 Score=37.63 Aligned_cols=73 Identities=22% Similarity=0.255 Sum_probs=47.5
Q ss_pred ccEEEEecCceeecCCc----------------------cccc-----hHHHHHHHHhhc--CCCCceEEEEeCCCCCCH
Q 044580 55 SFGIAFDIDGVVLLGNT----------------------PIGG-----SNKALKRLYQHS--GDLRIPYIFLTNGGGFRE 105 (269)
Q Consensus 55 ~~a~lFDIDGVL~~G~~----------------------~iPg-----A~eal~~L~~~~--~~~gip~iflTN~~~~se 105 (269)
---|+||-||||..... |+++ =.++|.+|++.. .+..+.+.+||=.+..+.
T Consensus 121 qlRIAFDgDaVLfsDesE~vy~~~GL~~F~~~E~~~a~~Pl~~GP~~~fl~~L~~lQ~~~~~~~~piRtalVTAR~apah 200 (264)
T PF06189_consen 121 QLRIAFDGDAVLFSDESERVYQEQGLEAFHEHEKENADKPLPEGPFKDFLKKLSKLQKKFPPENSPIRTALVTARSAPAH 200 (264)
T ss_pred ceEEEEcCCeEeecCcchHhHHhccHHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHhcCCCCCceEEEEEEcCCCchh
Confidence 45799999999987441 2222 223344454432 345677799998888877
Q ss_pred HHHHHHHHHHcCCCCCCCcEEcch
Q 044580 106 SKRATELSKLLGVNILPCQVVQGH 129 (269)
Q Consensus 106 ~~~a~~Ls~~lGi~i~~~qVi~s~ 129 (269)
+...+-| +.+|+.++ |-+++++
T Consensus 201 ~RvI~TL-r~Wgv~vD-EafFLgG 222 (264)
T PF06189_consen 201 ERVIRTL-RSWGVRVD-EAFFLGG 222 (264)
T ss_pred HHHHHHH-HHcCCcHh-HHHHhCC
Confidence 7777777 68999887 3344433
No 205
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=79.84 E-value=6.9 Score=36.65 Aligned_cols=66 Identities=17% Similarity=0.206 Sum_probs=45.6
Q ss_pred CccEEEEecCceeecCCc----cccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEc
Q 044580 54 PSFGIAFDIDGVVLLGNT----PIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQ 127 (269)
Q Consensus 54 ~~~a~lFDIDGVL~~G~~----~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~ 127 (269)
..-.++||+|-||++... +-|...++++.|++ .|--.++=|-|+ ++.....| +.+|++---+-|+.
T Consensus 121 ~phVIVfDlD~TLItd~~~v~Ir~~~v~~sL~~Lk~----~g~vLvLWSyG~---~eHV~~sl-~~~~L~~~Fd~ii~ 190 (297)
T PF05152_consen 121 PPHVIVFDLDSTLITDEGDVRIRDPAVYDSLRELKE----QGCVLVLWSYGN---REHVRHSL-KELKLEGYFDIIIC 190 (297)
T ss_pred CCcEEEEECCCcccccCCccccCChHHHHHHHHHHH----cCCEEEEecCCC---HHHHHHHH-HHhCCccccEEEEe
Confidence 345899999999997655 34888899999998 477667777665 44444555 57777622234444
No 206
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=79.45 E-value=8.3 Score=35.55 Aligned_cols=83 Identities=19% Similarity=0.187 Sum_probs=54.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcch-----HHHHHHHHhcCC-C-eEEEEcCchh-HHHHhhcC--ceEe
Q 044580 95 IFLTNGGGFRESKRATELSKLLGVNILPCQVVQGH-----SPFKQLFNRFEN-E-FIVAVGKGEP-AAVMAEYG--FKNV 164 (269)
Q Consensus 95 iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~-----tp~~~L~~~~~~-k-~VlvvG~~~~-~~v~~~~G--f~~v 164 (269)
++||+++-.+.- ++-|-=.||--+..++|..+. .+++.++++|+. + .-.+||++.. .++++..+ |-.+
T Consensus 179 vLVTs~qLVPaL--aKcLLy~L~~~f~ieNIYSa~kvGK~~cFe~I~~Rfg~p~~~f~~IGDG~eEe~aAk~l~wPFw~I 256 (274)
T TIGR01658 179 VLVTSGQLIPSL--AKCLLFRLDTIFRIENVYSSIKVGKLQCFKWIKERFGHPKVRFCAIGDGWEECTAAQAMNWPFVKI 256 (274)
T ss_pred EEEEcCccHHHH--HHHHHhccCCccccccccchhhcchHHHHHHHHHHhCCCCceEEEeCCChhHHHHHHhcCCCeEEe
Confidence 899988755543 333322455556778998853 788889999976 5 4456787754 46677776 4445
Q ss_pred cCccccccccccCCC
Q 044580 165 LSIDEYASYFDGIDP 179 (269)
Q Consensus 165 ~t~~d~~~~~p~ldp 179 (269)
.+-.|+.+.+|+++.
T Consensus 257 ~~h~Dl~~l~~aL~l 271 (274)
T TIGR01658 257 DLHPDSSHRFPGLTL 271 (274)
T ss_pred ecCCCHHHhCccCCc
Confidence 555677777776664
No 207
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=78.83 E-value=2.6 Score=37.30 Aligned_cols=29 Identities=10% Similarity=0.165 Sum_probs=19.5
Q ss_pred hcCCCeEEEEcCchh--HHHHhhcCceEecC
Q 044580 138 RFENEFIVAVGKGEP--AAVMAEYGFKNVLS 166 (269)
Q Consensus 138 ~~~~k~VlvvG~~~~--~~v~~~~Gf~~v~t 166 (269)
..+.+.+++.|+... ..+++.+|+..+..
T Consensus 91 ~~G~~v~iiSgg~~~lv~~ia~~lg~d~~~a 121 (212)
T COG0560 91 AAGAKVVIISGGFTFLVEPIAERLGIDYVVA 121 (212)
T ss_pred HCCCEEEEEcCChHHHHHHHHHHhCCchhee
Confidence 345566677777653 57789999877543
No 208
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=78.18 E-value=10 Score=40.58 Aligned_cols=90 Identities=16% Similarity=0.281 Sum_probs=60.3
Q ss_pred CCCCccEEEEecCceee----cCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEE
Q 044580 51 SQRPSFGIAFDIDGVVL----LGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVV 126 (269)
Q Consensus 51 ~~~~~~a~lFDIDGVL~----~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi 126 (269)
++.+..++.+=+||.|. -.+.+=|+|..++..|+. .|+.+++||+.-.. -|....+++|++.-..++.
T Consensus 699 e~~g~tvv~v~vn~~l~gv~~l~D~vr~~a~~av~~Lk~----~Gi~v~mLTGDn~~----aA~svA~~VGi~~V~aev~ 770 (951)
T KOG0207|consen 699 ERKGQTVVYVAVNGQLVGVFALEDQVRPDAALAVAELKS----MGIKVVMLTGDNDA----AARSVAQQVGIDNVYAEVL 770 (951)
T ss_pred hhcCceEEEEEECCEEEEEEEeccccchhHHHHHHHHHh----cCceEEEEcCCCHH----HHHHHHHhhCcceEEeccC
Confidence 34567788999998776 467788999999999998 69999999976533 3444556788542122222
Q ss_pred cch--HHHHHHHHhcCCCeEEEEcCc
Q 044580 127 QGH--SPFKQLFNRFENEFIVAVGKG 150 (269)
Q Consensus 127 ~s~--tp~~~L~~~~~~k~VlvvG~~ 150 (269)
.++ .-.+.+++ .+++|.+||+|
T Consensus 771 P~~K~~~Ik~lq~--~~~~VaMVGDG 794 (951)
T KOG0207|consen 771 PEQKAEKIKEIQK--NGGPVAMVGDG 794 (951)
T ss_pred chhhHHHHHHHHh--cCCcEEEEeCC
Confidence 233 23334432 23568888986
No 209
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=77.69 E-value=4.2 Score=36.97 Aligned_cols=66 Identities=23% Similarity=0.347 Sum_probs=35.4
Q ss_pred cCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEc-----chHHHHHHH
Q 044580 62 IDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQ-----GHSPFKQLF 136 (269)
Q Consensus 62 IDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~-----s~tp~~~L~ 136 (269)
+||+++-+.. ...+.++.+.+ .++|++++.+..... .+++ -|.. +...+++|.
T Consensus 57 vDGiI~~s~~---~~~~~l~~~~~----~~iPvV~~~~~~~~~-----------~~~~----~V~~D~~~a~~~a~~~Li 114 (279)
T PF00532_consen 57 VDGIILASSE---NDDEELRRLIK----SGIPVVLIDRYIDNP-----------EGVP----SVYIDNYEAGYEATEYLI 114 (279)
T ss_dssp SSEEEEESSS---CTCHHHHHHHH----TTSEEEEESS-SCTT-----------CTSC----EEEEEHHHHHHHHHHHHH
T ss_pred CCEEEEeccc---CChHHHHHHHH----cCCCEEEEEeccCCc-----------ccCC----EEEEcchHHHHHHHHHHH
Confidence 6677666432 22455666665 378888887653111 1222 3333 236777887
Q ss_pred HhcCCCeEEEEcC
Q 044580 137 NRFENEFIVAVGK 149 (269)
Q Consensus 137 ~~~~~k~VlvvG~ 149 (269)
++-+.+.|.++|.
T Consensus 115 ~~Gh~~~I~~i~~ 127 (279)
T PF00532_consen 115 KKGHRRPIAFIGG 127 (279)
T ss_dssp HTTCCSTEEEEEE
T ss_pred hcccCCeEEEEec
Confidence 7655442555554
No 210
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=77.64 E-value=0.98 Score=38.42 Aligned_cols=14 Identities=36% Similarity=0.567 Sum_probs=12.6
Q ss_pred EEEecCceeecCCc
Q 044580 58 IAFDIDGVVLLGNT 71 (269)
Q Consensus 58 ~lFDIDGVL~~G~~ 71 (269)
.+||+||||++++.
T Consensus 2 a~FD~DgTL~~~~s 15 (202)
T TIGR01490 2 AFFDFDGTLTAKDT 15 (202)
T ss_pred eEEccCCCCCCCch
Confidence 68999999999875
No 211
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=77.50 E-value=4.4 Score=43.74 Aligned_cols=53 Identities=8% Similarity=0.021 Sum_probs=38.0
Q ss_pred CccEEEEecCceeecC---------------CccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHH
Q 044580 54 PSFGIAFDIDGVVLLG---------------NTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATEL 112 (269)
Q Consensus 54 ~~~a~lFDIDGVL~~G---------------~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~L 112 (269)
+..+|+||.||||..- -.+-|+..++|+.|.+. .+-.++++|. ++.++.-+-|
T Consensus 590 ~~RLlfLDyDGTLap~~~~P~~~~~~~~~~~a~p~p~l~~~L~~L~~d---p~n~VaIVSG---R~~~~Le~~f 657 (934)
T PLN03064 590 NNRLLILGFNATLTEPVDTPGRRGDQIKEMELRLHPELKEPLRALCSD---PKTTIVVLSG---SDRSVLDENF 657 (934)
T ss_pred cceEEEEecCceeccCCCCcccccccccccccCCCHHHHHHHHHHHhC---CCCeEEEEeC---CCHHHHHHHh
Confidence 4579999999999852 12447778899999874 4677888885 4565555444
No 212
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=77.38 E-value=1.3 Score=36.76 Aligned_cols=16 Identities=25% Similarity=0.503 Sum_probs=13.5
Q ss_pred cEEEEecCceeecCCc
Q 044580 56 FGIAFDIDGVVLLGNT 71 (269)
Q Consensus 56 ~a~lFDIDGVL~~G~~ 71 (269)
..++||+||||+....
T Consensus 2 ~~iiFD~dgTL~~~~~ 17 (188)
T TIGR01489 2 VVVVSDFDGTITLNDS 17 (188)
T ss_pred eEEEEeCCCcccCCCc
Confidence 4689999999998754
No 213
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=77.28 E-value=13 Score=33.16 Aligned_cols=75 Identities=17% Similarity=0.199 Sum_probs=50.1
Q ss_pred CCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCC-------------------CCcEEc-c
Q 044580 69 GNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNIL-------------------PCQVVQ-G 128 (269)
Q Consensus 69 G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~-------------------~~qVi~-s 128 (269)
-.+.-||+.|..++|+++ |+.++++|.|- + ..+.-....||++.. ..+-+. |
T Consensus 86 k~~lT~Gi~eLv~~L~~~----~~~v~liSGGF-~---~~i~~Va~~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~ptsds 157 (227)
T KOG1615|consen 86 KPTLTPGIRELVSRLHAR----GTQVYLISGGF-R---QLIEPVAEQLGIPKSNIYANELLFDKDGKYLGFDTNEPTSDS 157 (227)
T ss_pred CCccCCCHHHHHHHHHHc----CCeEEEEcCCh-H---HHHHHHHHHhCCcHhhhhhheeeeccCCcccccccCCccccC
Confidence 345679999999999994 99999999664 2 334444467888741 111111 2
Q ss_pred h---HHHHHHHHhcCCCeEEEEcCch
Q 044580 129 H---SPFKQLFNRFENEFIVAVGKGE 151 (269)
Q Consensus 129 ~---tp~~~L~~~~~~k~VlvvG~~~ 151 (269)
. ..+..+.+.++.+.+..||++.
T Consensus 158 ggKa~~i~~lrk~~~~~~~~mvGDGa 183 (227)
T KOG1615|consen 158 GGKAEVIALLRKNYNYKTIVMVGDGA 183 (227)
T ss_pred CccHHHHHHHHhCCChheeEEecCCc
Confidence 1 5566676777778888888864
No 214
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=76.43 E-value=13 Score=40.09 Aligned_cols=48 Identities=19% Similarity=0.179 Sum_probs=37.7
Q ss_pred ceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCC
Q 044580 64 GVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVN 119 (269)
Q Consensus 64 GVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~ 119 (269)
|.+.-.+.+=|++.++++.|++ .|+.++++|.....+ |..+.+.+|+.
T Consensus 572 Gli~~~Dplr~~~~~aI~~l~~----aGI~v~miTGD~~~t----A~~iA~~~GI~ 619 (941)
T TIGR01517 572 GVVGIKDPLRPGVREAVQECQR----AGITVRMVTGDNIDT----AKAIARNCGIL 619 (941)
T ss_pred EEeeccCCCchhHHHHHHHHHH----CCCEEEEECCCChHH----HHHHHHHcCCC
Confidence 6666777888999999999998 599999999775444 44455677874
No 215
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=76.13 E-value=4.7 Score=39.28 Aligned_cols=65 Identities=31% Similarity=0.393 Sum_probs=46.8
Q ss_pred CCCccEEEEecCceeecCCc-------------cccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHH--------HHH
Q 044580 52 QRPSFGIAFDIDGVVLLGNT-------------PIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESK--------RAT 110 (269)
Q Consensus 52 ~~~~~a~lFDIDGVL~~G~~-------------~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~--------~a~ 110 (269)
....+-+.||+||||+.... ..|....=++.|.++ |+-.+|.||-.+..+.. +++
T Consensus 72 ~~~~K~i~FD~dgtlI~t~sg~vf~~~~~dw~~l~~~vp~Klktl~~~----g~~l~iftnq~~i~r~~~~~~~f~~Ki~ 147 (422)
T KOG2134|consen 72 NGGSKIIMFDYDGTLIDTKSGKVFPKGSMDWRILFPEVPSKLKTLYQD----GIKLFIFTNQNGIARGKLELEEFKKKIK 147 (422)
T ss_pred CCCcceEEEecCCceeecCCcceeeccCccceeeccccchhhhhhccC----CeEEEEEecccccccCcchHHHHHHHHH
Confidence 34568899999999998653 356667778888885 99999999987644332 334
Q ss_pred HHHHHcCCCC
Q 044580 111 ELSKLLGVNI 120 (269)
Q Consensus 111 ~Ls~~lGi~i 120 (269)
.+...+|+++
T Consensus 148 ~i~anl~vPi 157 (422)
T KOG2134|consen 148 AIVANLGVPI 157 (422)
T ss_pred HHHHhcCCce
Confidence 4444678876
No 216
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=75.73 E-value=14 Score=39.73 Aligned_cols=48 Identities=15% Similarity=0.243 Sum_probs=37.6
Q ss_pred ceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCC
Q 044580 64 GVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVN 119 (269)
Q Consensus 64 GVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~ 119 (269)
|.+.-.+.+=|++.++++.|++ .|+.++++|.... ..+..+.+.+|+.
T Consensus 543 Gli~l~Dp~R~~a~~aI~~l~~----aGI~v~miTGD~~----~tA~aIA~~lGI~ 590 (903)
T PRK15122 543 GFLTFLDPPKESAAPAIAALRE----NGVAVKVLTGDNP----IVTAKICREVGLE 590 (903)
T ss_pred EEEeccCccHHHHHHHHHHHHH----CCCeEEEECCCCH----HHHHHHHHHcCCC
Confidence 5666677888999999999998 5999999997653 3455556778884
No 217
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=75.01 E-value=6.7 Score=35.21 Aligned_cols=56 Identities=20% Similarity=0.240 Sum_probs=38.2
Q ss_pred CCccEEEEecCceeecCC-ccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCC
Q 044580 53 RPSFGIAFDIDGVVLLGN-TPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNI 120 (269)
Q Consensus 53 ~~~~a~lFDIDGVL~~G~-~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i 120 (269)
.+...++||.||||.-.. ..-|.-.+.|+.|+. .+.+-|+-. .+.++.. +++|-++
T Consensus 9 ~~~~l~lfdvdgtLt~~r~~~~~e~~~~l~~lr~-----~v~ig~Vgg------sDl~k~~-eqlG~~V 65 (252)
T KOG3189|consen 9 DEETLCLFDVDGTLTPPRQKVTPEMLEFLQKLRK-----KVTIGFVGG------SDLSKQQ-EQLGDNV 65 (252)
T ss_pred CCceEEEEecCCccccccccCCHHHHHHHHHHhh-----heEEEEeec------HHHHHHH-HHhchhH
Confidence 345678999999999755 467888899999887 555555532 1444444 4677653
No 218
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=74.65 E-value=20 Score=38.41 Aligned_cols=48 Identities=17% Similarity=0.320 Sum_probs=37.7
Q ss_pred ceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCC
Q 044580 64 GVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVN 119 (269)
Q Consensus 64 GVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~ 119 (269)
|.+.-.+.+=|++.++++.|++ .|+.++++|..... -+..+.+++|+.
T Consensus 508 Gli~l~Dp~R~~~~~aI~~l~~----aGI~vvmiTGD~~~----tA~aIA~~lGI~ 555 (867)
T TIGR01524 508 GFLGFLDPPKESTKEAIAALFK----NGINVKVLTGDNEI----VTARICQEVGID 555 (867)
T ss_pred EEEEeeCCCchhHHHHHHHHHH----CCCEEEEEcCCCHH----HHHHHHHHcCCC
Confidence 5666677888999999999999 59999999976433 345555778884
No 219
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=74.49 E-value=2.6 Score=37.34 Aligned_cols=43 Identities=14% Similarity=0.067 Sum_probs=25.3
Q ss_pred EEecCceeecCC------ccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHH
Q 044580 59 AFDIDGVVLLGN------TPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESK 107 (269)
Q Consensus 59 lFDIDGVL~~G~------~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~ 107 (269)
+||.||||..-. .+-|++.++|+.|.+. .+.-++++|. ++.++
T Consensus 1 ~lDyDGTL~p~~~~p~~~~~~~~~~~~L~~La~~---~~~~v~IvSG---R~~~~ 49 (235)
T PF02358_consen 1 FLDYDGTLAPIVDDPDAAVPPPELRELLRALAAD---PNNTVAIVSG---RSLDD 49 (235)
T ss_dssp EEE-TTTSS---S-GGG----HHHHHHHHHHHHH---SE--EEEE-S---S-HHH
T ss_pred CcccCCccCCCCCCccccCCCHHHHHHHHHHhcc---CCCEEEEEEe---CCHHH
Confidence 589999999633 4678899999999984 2334777775 45555
No 220
>PRK11590 hypothetical protein; Provisional
Probab=74.34 E-value=40 Score=29.17 Aligned_cols=40 Identities=10% Similarity=-0.067 Sum_probs=29.9
Q ss_pred ccccchHHHH-HHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCC
Q 044580 71 TPIGGSNKAL-KRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGV 118 (269)
Q Consensus 71 ~~iPgA~eal-~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi 118 (269)
.+.||+.+.| +.|++ .|.+++++||.. ..+++.+.+.+|+
T Consensus 95 ~~~pga~e~L~~~l~~----~G~~l~IvSas~----~~~~~~il~~l~~ 135 (211)
T PRK11590 95 TAFPVVQERLTTYLLS----SDADVWLITGSP----QPLVEQVYFDTPW 135 (211)
T ss_pred cCCccHHHHHHHHHHh----CCCEEEEEeCCc----HHHHHHHHHHccc
Confidence 5689999999 56776 499999999974 3455555456774
No 221
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=73.31 E-value=22 Score=38.31 Aligned_cols=48 Identities=21% Similarity=0.308 Sum_probs=36.1
Q ss_pred ceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCC
Q 044580 64 GVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVN 119 (269)
Q Consensus 64 GVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~ 119 (269)
|.+---+.+-|++.++++.|++ .|++++++|.... +.+..+.+.+|+.
T Consensus 530 Gl~~~~Dplr~~v~e~I~~l~~----aGI~v~miTGD~~----~tA~~ia~~~gi~ 577 (917)
T TIGR01116 530 GVVGMLDPPRPEVADAIEKCRT----AGIRVIMITGDNK----ETAEAICRRIGIF 577 (917)
T ss_pred EEeeeeCCCchhHHHHHHHHHH----CCCEEEEecCCCH----HHHHHHHHHcCCC
Confidence 5555566788999999999998 5999999997642 3344555677874
No 222
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=72.11 E-value=13 Score=35.84 Aligned_cols=108 Identities=19% Similarity=0.214 Sum_probs=49.9
Q ss_pred EEEEecCceeecCCc-cccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHH---c----------------
Q 044580 57 GIAFDIDGVVLLGNT-PIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKL---L---------------- 116 (269)
Q Consensus 57 a~lFDIDGVL~~G~~-~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~---l---------------- 116 (269)
|++|...||+-...+ .+-++.-|++.++++-+=.|+++..+.=.+......++++..+. -
T Consensus 4 GiL~S~tG~~a~~e~~~~~~~~lAI~eINa~GGvlG~~le~v~~Dp~Sd~~~ya~~A~~Li~~d~V~~ifGc~TSasRKa 83 (363)
T PF13433_consen 4 GILHSLTGTMAISERSLLDGALLAIEEINAAGGVLGRQLEPVIYDPASDPSTYAEKAEKLIREDGVRAIFGCYTSASRKA 83 (363)
T ss_dssp EEE--SSSTTHHHHHHHHHHHHHHHHHHHCTTTBTTB--EEEEE--TT-HHHHHHHHHHHHHHS---EEEE--SHHHHHH
T ss_pred EEEEeCCCchHhhhHHHHHHHHHHHHHHHhcCCcCCeEEEEEEECCCCCHHHHHHHHHHHHHhCCccEEEecchhhhHHH
Confidence 566666666654333 45566666666665422245555444433333343333333211 1
Q ss_pred -------------------CCCCCCCcEEcch-------HHHHHHHHhcCCCeEEEEcCchh---------HHHHhhcCc
Q 044580 117 -------------------GVNILPCQVVQGH-------SPFKQLFNRFENEFIVAVGKGEP---------AAVMAEYGF 161 (269)
Q Consensus 117 -------------------Gi~i~~~qVi~s~-------tp~~~L~~~~~~k~VlvvG~~~~---------~~v~~~~Gf 161 (269)
|++.++.-|.++. -.+.++.++++.+++|+||++-. ++.++..|-
T Consensus 84 VlPvvE~~~~LL~Yp~~YEG~E~S~nviYtGa~PNQ~~~pl~~~~~~~~G~~r~~lvGSdYv~pre~Nri~r~~l~~~Gg 163 (363)
T PF13433_consen 84 VLPVVERHNALLFYPTQYEGFECSPNVIYTGAAPNQQLLPLIDYLLENFGAKRFYLVGSDYVYPRESNRIIRDLLEARGG 163 (363)
T ss_dssp HHHHHHHCT-EEEE-S--------TTEEE-S--GGGTHHHHHHHHHHHS--SEEEEEEESSHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHhcCceEEeccccccccCCCceEEcCCCchhhHHHHHHHHHhccCCceEEEecCCccchHHHHHHHHHHHHHcCC
Confidence 2333444444432 33556777777689999998632 455777787
Q ss_pred eEe
Q 044580 162 KNV 164 (269)
Q Consensus 162 ~~v 164 (269)
+.+
T Consensus 164 evv 166 (363)
T PF13433_consen 164 EVV 166 (363)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 223
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=71.66 E-value=1.9 Score=35.93 Aligned_cols=13 Identities=31% Similarity=0.652 Sum_probs=12.2
Q ss_pred EEEecCceeecCC
Q 044580 58 IAFDIDGVVLLGN 70 (269)
Q Consensus 58 ~lFDIDGVL~~G~ 70 (269)
++||+||||+.+.
T Consensus 1 v~fD~DGTL~~~~ 13 (192)
T PF12710_consen 1 VIFDFDGTLTDSD 13 (192)
T ss_dssp EEEESBTTTBSSH
T ss_pred eEEecCcCeecCC
Confidence 6899999999998
No 224
>TIGR00035 asp_race aspartate racemase.
Probab=71.17 E-value=39 Score=29.88 Aligned_cols=83 Identities=13% Similarity=0.119 Sum_probs=57.7
Q ss_pred CccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEc-chHHHHHHHHhcCCCeEEEEc
Q 044580 70 NTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQ-GHSPFKQLFNRFENEFIVAVG 148 (269)
Q Consensus 70 ~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~-s~tp~~~L~~~~~~k~VlvvG 148 (269)
..+.+...+++++|.+ .|..++++.-|+ .+...+++.+..+++ |+. .......+ +..+.++|-++|
T Consensus 58 ~~~~~~l~~~~~~L~~----~g~d~iviaCNT---ah~~~~~l~~~~~iP-----ii~i~~~~~~~~-~~~~~~~VgvLa 124 (229)
T TIGR00035 58 DRPRPILIDIAVKLEN----AGADFIIMPCNT---AHKFAEDIQKAIGIP-----LISMIEETAEAV-KEDGVKKAGLLG 124 (229)
T ss_pred chHHHHHHHHHHHHHH----cCCCEEEECCcc---HHHHHHHHHHhCCCC-----EechHHHHHHHH-HHcCCCEEEEEe
Confidence 3588889999999988 599998888775 445567786556554 443 22334444 444678999999
Q ss_pred Cchh------HHHHhhcCceEec
Q 044580 149 KGEP------AAVMAEYGFKNVL 165 (269)
Q Consensus 149 ~~~~------~~v~~~~Gf~~v~ 165 (269)
+... .+.++++|++.+.
T Consensus 125 T~~T~~s~~y~~~l~~~g~~v~~ 147 (229)
T TIGR00035 125 TKGTMKDGVYEREMKKHGIEIVT 147 (229)
T ss_pred cHHHHHhHHHHHHHHHCCCEEEC
Confidence 8643 3568889988765
No 225
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=71.08 E-value=1.9 Score=35.65 Aligned_cols=14 Identities=29% Similarity=0.558 Sum_probs=12.7
Q ss_pred EEEecCceeecCCc
Q 044580 58 IAFDIDGVVLLGNT 71 (269)
Q Consensus 58 ~lFDIDGVL~~G~~ 71 (269)
++||+||||+....
T Consensus 2 ~~fD~DgTl~~~~s 15 (177)
T TIGR01488 2 AIFDFDGTLTRQDS 15 (177)
T ss_pred EEecCccccccchh
Confidence 79999999999876
No 226
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=69.38 E-value=44 Score=25.98 Aligned_cols=49 Identities=14% Similarity=0.144 Sum_probs=36.6
Q ss_pred cCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCC
Q 044580 68 LGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNI 120 (269)
Q Consensus 68 ~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i 120 (269)
+.+..+-|..++++.++. .+...+|++++.+.........+.+..++++
T Consensus 13 ragkl~~G~~~v~kai~~----gkaklViiA~D~~~~~~~~i~~~c~~~~Ip~ 61 (99)
T PRK01018 13 DTGKVILGSKRTIKAIKL----GKAKLVIVASNCPKDIKEDIEYYAKLSGIPV 61 (99)
T ss_pred HcCCEEEcHHHHHHHHHc----CCceEEEEeCCCCHHHHHHHHHHHHHcCCCE
Confidence 566788899999999987 3788999999975555555555555667774
No 227
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=69.33 E-value=9.5 Score=31.35 Aligned_cols=44 Identities=14% Similarity=0.155 Sum_probs=32.1
Q ss_pred cCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCC
Q 044580 68 LGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVN 119 (269)
Q Consensus 68 ~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~ 119 (269)
..-.+.||+.+.++.+++ .|++++++|++.. ..++.+.+.+|+.
T Consensus 70 ~~~~~~~g~~~~l~~l~~----~g~~~~ivS~~~~----~~i~~~~~~~g~~ 113 (177)
T TIGR01488 70 RQVALRPGARELISWLKE----RGIDTVIVSGGFD----FFVEPVAEKLGID 113 (177)
T ss_pred hcCCcCcCHHHHHHHHHH----CCCEEEEECCCcH----HHHHHHHHHcCCc
Confidence 333467999999999998 4999999998742 3444444567764
No 228
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=69.26 E-value=8.5 Score=34.96 Aligned_cols=25 Identities=24% Similarity=0.050 Sum_probs=15.7
Q ss_pred CccEEEEecCCccchhhHHHHHHHHHhCCC
Q 044580 209 RVQAAFIVSDSVDWSRDIQVLCDILRTGGL 238 (269)
Q Consensus 209 ~i~AI~v~~Dp~dW~~diQii~DlL~s~G~ 238 (269)
.++|||..+|..-. -++..|...|.
T Consensus 238 ~~~Ai~~~~D~~A~-----g~~~al~~~g~ 262 (327)
T TIGR02417 238 LPQALFTTSYTLLE-----GVLDYMLERPL 262 (327)
T ss_pred CCcEEEEcCcHHHH-----HHHHHHHHcCC
Confidence 47899998885422 24556665443
No 229
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=68.88 E-value=26 Score=36.48 Aligned_cols=69 Identities=13% Similarity=0.144 Sum_probs=44.6
Q ss_pred CccEEEEecCceeecCCc------------cccchHHHHHHHHhhcCCCCceEEEEeCCCC---CCHHHHHHHHHHHcCC
Q 044580 54 PSFGIAFDIDGVVLLGNT------------PIGGSNKALKRLYQHSGDLRIPYIFLTNGGG---FRESKRATELSKLLGV 118 (269)
Q Consensus 54 ~~~a~lFDIDGVL~~G~~------------~iPgA~eal~~L~~~~~~~gip~iflTN~~~---~se~~~a~~Ls~~lGi 118 (269)
..+-|+.|||||+.+... ..-|..+...++.++ |..+++||-.+- .+...+..-+ ++-|-
T Consensus 529 n~kIVISDIDGTITKSDvLGh~lp~iGkDWTh~GVAkLyt~Ik~N----GYk~lyLSARaIgQA~~TR~yL~nv-~QdG~ 603 (738)
T KOG2116|consen 529 NDKIVISDIDGTITKSDVLGHVLPMIGKDWTHTGVAKLYTKIKEN----GYKILYLSARAIGQADSTRQYLKNV-EQDGK 603 (738)
T ss_pred CCcEEEecCCCceEhhhhhhhhhhhhcCcchhhhHHHHHHHHHhC----CeeEEEEehhhhhhhHHHHHHHHHH-hhcCc
Confidence 457899999999998653 235777778888775 999999996542 2223444444 24455
Q ss_pred CCCCCcEEc
Q 044580 119 NILPCQVVQ 127 (269)
Q Consensus 119 ~i~~~qVi~ 127 (269)
.+...=|+.
T Consensus 604 ~LPdGPViL 612 (738)
T KOG2116|consen 604 KLPDGPVIL 612 (738)
T ss_pred cCCCCCEEe
Confidence 444444444
No 230
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=68.76 E-value=8.5 Score=35.10 Aligned_cols=21 Identities=14% Similarity=0.246 Sum_probs=13.2
Q ss_pred chHHHHHHHHhcCCCeEEEEcC
Q 044580 128 GHSPFKQLFNRFENEFIVAVGK 149 (269)
Q Consensus 128 s~tp~~~L~~~~~~k~VlvvG~ 149 (269)
+...+++|.++ +.+++.++|.
T Consensus 168 ~~~a~~~L~~~-Gh~~I~~i~~ 188 (331)
T PRK14987 168 ARQMTTAIIAR-GHRHIAYLGA 188 (331)
T ss_pred HHHHHHHHHHC-CCceEEEEcC
Confidence 34667777764 4456777764
No 231
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=68.57 E-value=10 Score=34.35 Aligned_cols=23 Identities=22% Similarity=0.108 Sum_probs=14.6
Q ss_pred CCccEEEEecCCccchhhHHHHHHHHHh
Q 044580 208 QRVQAAFIVSDSVDWSRDIQVLCDILRT 235 (269)
Q Consensus 208 ~~i~AI~v~~Dp~dW~~diQii~DlL~s 235 (269)
..++|||..+|..-- -++..|..
T Consensus 237 ~~~~ai~~~~d~~A~-----g~~~al~~ 259 (328)
T PRK11303 237 PMPDALFTTSYTLLQ-----GVLDVLLE 259 (328)
T ss_pred CCCCEEEEcCcHHHH-----HHHHHHHH
Confidence 358999998885311 24566666
No 232
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=67.99 E-value=22 Score=37.43 Aligned_cols=48 Identities=21% Similarity=0.289 Sum_probs=37.5
Q ss_pred ceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCC
Q 044580 64 GVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVN 119 (269)
Q Consensus 64 GVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~ 119 (269)
|.+.--+.+=|+|.++++.|++ .|+.++++|.....+ ++.+.+++|+.
T Consensus 435 Gli~l~Dp~R~~a~~aI~~l~~----aGI~v~miTGD~~~t----A~~IA~~lGI~ 482 (755)
T TIGR01647 435 GLLPLFDPPRHDTKETIERARH----LGVEVKMVTGDHLAI----AKETARRLGLG 482 (755)
T ss_pred EEeeccCCChhhHHHHHHHHHH----CCCeEEEECCCCHHH----HHHHHHHcCCC
Confidence 5666677889999999999999 599999999765433 44555677874
No 233
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=67.84 E-value=29 Score=31.63 Aligned_cols=13 Identities=8% Similarity=0.296 Sum_probs=10.2
Q ss_pred CCccEEEEecCCc
Q 044580 208 QRVQAAFIVSDSV 220 (269)
Q Consensus 208 ~~i~AI~v~~Dp~ 220 (269)
..++|||..+|..
T Consensus 242 ~~~~ai~~~nd~~ 254 (342)
T PRK10014 242 PTISAVVCYNETI 254 (342)
T ss_pred CCCCEEEECCcHH
Confidence 4689999988863
No 234
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=67.81 E-value=17 Score=31.66 Aligned_cols=33 Identities=21% Similarity=0.344 Sum_probs=20.7
Q ss_pred ecCceeecCCccccchHHHHHHHHhhcCCCCceEEEEe
Q 044580 61 DIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLT 98 (269)
Q Consensus 61 DIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflT 98 (269)
..||+++.+.. .+...+.++.+++ .++|++++-
T Consensus 56 ~vdgiii~~~~-~~~~~~~l~~~~~----~~iPvV~~~ 88 (275)
T cd06317 56 KVDGIILWPTD-GQAYIPGLRKAKQ----AGIPVVITN 88 (275)
T ss_pred CCCEEEEecCC-ccccHHHHHHHHH----CCCcEEEeC
Confidence 45676665432 2334567777777 499998763
No 235
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=66.97 E-value=2.8 Score=36.85 Aligned_cols=20 Identities=25% Similarity=0.182 Sum_probs=16.5
Q ss_pred CccEEEEecCceeecCCccc
Q 044580 54 PSFGIAFDIDGVVLLGNTPI 73 (269)
Q Consensus 54 ~~~a~lFDIDGVL~~G~~~i 73 (269)
..+..+||.||||++++...
T Consensus 4 ~~~la~FDfDgTLt~~ds~~ 23 (210)
T TIGR01545 4 AKRIIFFDLDGTLHQQDMFG 23 (210)
T ss_pred cCcEEEEcCCCCCccCccHH
Confidence 45678999999999998643
No 236
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=66.74 E-value=25 Score=32.95 Aligned_cols=10 Identities=30% Similarity=0.311 Sum_probs=8.9
Q ss_pred ccEEEEecCC
Q 044580 210 VQAAFIVSDS 219 (269)
Q Consensus 210 i~AI~v~~Dp 219 (269)
.+|||..+|-
T Consensus 238 ptAif~~nD~ 247 (333)
T COG1609 238 PTAIFCANDL 247 (333)
T ss_pred CcEEEEcCcH
Confidence 8999999984
No 237
>cd00431 cysteine_hydrolases Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It also contains isochorismatase, an enzyme that catalyzes the conversion of isochorismate to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of the vinyl ether bond, and other related enzymes with unknown function.
Probab=66.61 E-value=41 Score=27.39 Aligned_cols=103 Identities=17% Similarity=0.227 Sum_probs=54.5
Q ss_pred EEEecCceeecCC--------ccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHH--------------HHHHHHHHH
Q 044580 58 IAFDIDGVVLLGN--------TPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRES--------------KRATELSKL 115 (269)
Q Consensus 58 ~lFDIDGVL~~G~--------~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~--------------~~a~~Ls~~ 115 (269)
+++|+--...... ..++...+.++..++ .++|+++++........ ..-..+...
T Consensus 3 liID~Q~~f~~~~~~~~~~~~~~~~~i~~l~~~ar~----~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 78 (161)
T cd00431 3 LVVDMQNDFVPGGGLLLPGADELVPNINRLLAAARA----AGIPVIFTRDWHPPDDPEFAELLWPPHCVKGTEGAELVPE 78 (161)
T ss_pred EEEECcccCcCCCCCcCccHHHHHHHHHHHHHHHHH----cCCeEEEEEeeecCCCcccccccCcccccCCCchhhcchh
Confidence 5666666555433 233444444555554 58999988875542110 011112122
Q ss_pred cCCCCCCCcEEc--c-----hHHHHHHHHhcCCCeEEEEcCch--h----HHHHhhcCceEec
Q 044580 116 LGVNILPCQVVQ--G-----HSPFKQLFNRFENEFIVAVGKGE--P----AAVMAEYGFKNVL 165 (269)
Q Consensus 116 lGi~i~~~qVi~--s-----~tp~~~L~~~~~~k~VlvvG~~~--~----~~v~~~~Gf~~v~ 165 (269)
+. ....+.++. . .+.+..+.++.+.+.|+++|-.. + ..-+.+.||+.++
T Consensus 79 l~-~~~~~~~i~K~~~saf~~t~l~~~L~~~~i~~vil~G~~t~~CV~~T~~~a~~~G~~v~v 140 (161)
T cd00431 79 LA-PLPDDLVIEKTRYSAFYGTDLDELLRERGIDTLVVCGIATDICVLATARDALDLGYRVIV 140 (161)
T ss_pred hC-CCCCCEEEecCCcCCccCCCHHHHHHHCCCCEEEEEecCcChhHHHHHHHHHHCCCEEEE
Confidence 21 122344554 1 24555555666777899998643 2 1236778999876
No 238
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=65.69 E-value=23 Score=38.08 Aligned_cols=48 Identities=21% Similarity=0.300 Sum_probs=36.4
Q ss_pred ceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCC
Q 044580 64 GVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVN 119 (269)
Q Consensus 64 GVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~ 119 (269)
|.+.-.+.+=|++.++++.|++ .|+.++++|..... .+..+.+++|+.
T Consensus 543 Gli~~~Dp~R~~a~~aI~~l~~----aGI~v~miTGD~~~----tA~~IA~~lGI~ 590 (902)
T PRK10517 543 GYIAFLDPPKETTAPALKALKA----SGVTVKILTGDSEL----VAAKVCHEVGLD 590 (902)
T ss_pred ehHhhhCcchhhHHHHHHHHHH----CCCEEEEEcCCCHH----HHHHHHHHcCCC
Confidence 4444566788999999999998 59999999976433 344555778884
No 239
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=65.39 E-value=19 Score=31.60 Aligned_cols=74 Identities=14% Similarity=0.124 Sum_probs=38.2
Q ss_pred ecCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcchHHHHHHHHhc-
Q 044580 61 DIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGHSPFKQLFNRF- 139 (269)
Q Consensus 61 DIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~tp~~~L~~~~- 139 (269)
.+||+++.+..+ +...+.++.+.+ .|+|++++-.... ++... . ..+..++.-.+...+++|.++.
T Consensus 60 ~vDgiii~~~~~-~~~~~~i~~~~~----~gIpvV~~d~~~~-~~~~~---~-----~~V~~d~~~~g~~aa~~l~~~~~ 125 (274)
T cd06311 60 KIDALVILPFES-APLTQPVAKAKK----AGIFVVVVDRGLS-SPGAQ---D-----LYVAGDNYGMGRVAGEYIATKLG 125 (274)
T ss_pred CCCEEEEeCCCc-hhhHHHHHHHHH----CCCeEEEEcCCCC-CCccc---c-----eEEcCCcHHHHHHHHHHHHHHhC
Confidence 467777654321 334466777776 4999999854321 11000 0 0122233322346677777663
Q ss_pred CCCeEEEEc
Q 044580 140 ENEFIVAVG 148 (269)
Q Consensus 140 ~~k~VlvvG 148 (269)
+.++|++++
T Consensus 126 g~~~i~~~~ 134 (274)
T cd06311 126 GNGNIVVLR 134 (274)
T ss_pred CCCeEEEEE
Confidence 345676664
No 240
>COG4996 Predicted phosphatase [General function prediction only]
Probab=65.37 E-value=21 Score=30.10 Aligned_cols=56 Identities=18% Similarity=0.074 Sum_probs=35.6
Q ss_pred cEEEEecCceeecCC-------------------------ccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHH
Q 044580 56 FGIAFDIDGVVLLGN-------------------------TPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRAT 110 (269)
Q Consensus 56 ~a~lFDIDGVL~~G~-------------------------~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~ 110 (269)
.+++||.|||||+-. ...|..++.++.++. .|.=+-.+|=|- +..-.+
T Consensus 1 ~~i~~d~d~t~wdhh~iSsl~pPf~rVs~n~i~Ds~G~ev~L~~~v~~~l~warn----sG~i~~~~sWN~---~~kA~~ 73 (164)
T COG4996 1 RAIVFDADKTLWDHHNISSLEPPFRRVSSNTIEDSKGREVHLFPDVKETLKWARN----SGYILGLASWNF---EDKAIK 73 (164)
T ss_pred CcEEEeCCCcccccccchhcCCcceecCccceecCCCeEEEEcHHHHHHHHHHHh----CCcEEEEeecCc---hHHHHH
Confidence 378999999999743 135667777777776 465555555432 444444
Q ss_pred HHHHHcCCC
Q 044580 111 ELSKLLGVN 119 (269)
Q Consensus 111 ~Ls~~lGi~ 119 (269)
.| +.+|+.
T Consensus 74 aL-ral~~~ 81 (164)
T COG4996 74 AL-RALDLL 81 (164)
T ss_pred HH-HHhchh
Confidence 55 467664
No 241
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=65.19 E-value=17 Score=31.74 Aligned_cols=87 Identities=16% Similarity=0.128 Sum_probs=43.3
Q ss_pred ecCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcchHHHHHHHHhc-
Q 044580 61 DIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGHSPFKQLFNRF- 139 (269)
Q Consensus 61 DIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~tp~~~L~~~~- 139 (269)
.+||+++.+.. .+...+.++.+.+ .++|++++.-.. .. .. ..+..++.-.+...+.+|.+..
T Consensus 57 ~~dgiIi~~~~-~~~~~~~i~~~~~----~~ipvv~~~~~~--~~-----~~-----~~V~~d~~~~g~~~~~~l~~~~~ 119 (271)
T cd06321 57 KVDLILLNAVD-SKGIAPAVKRAQA----AGIVVVAVDVAA--EG-----AD-----ATVTTDNVQAGEISCQYLADRLG 119 (271)
T ss_pred CCCEEEEeCCC-hhHhHHHHHHHHH----CCCeEEEecCCC--CC-----cc-----ceeeechHHHHHHHHHHHHHHhC
Confidence 46777775432 2334567788876 489999984211 10 00 0122222222346667777653
Q ss_pred CCCeEEEEcCc-hhHHHHhhcCceEe
Q 044580 140 ENEFIVAVGKG-EPAAVMAEYGFKNV 164 (269)
Q Consensus 140 ~~k~VlvvG~~-~~~~v~~~~Gf~~v 164 (269)
+.++|.++++. ......+..||+.+
T Consensus 120 g~~~i~~i~g~~~~~~~~R~~g~~~~ 145 (271)
T cd06321 120 GKGNVAILNGPPVSAVLDRVAGCKAA 145 (271)
T ss_pred CCceEEEEeCCCCchHHHHHHHHHHH
Confidence 33567766542 22222344555443
No 242
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=64.04 E-value=39 Score=26.86 Aligned_cols=53 Identities=13% Similarity=0.113 Sum_probs=39.6
Q ss_pred ceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCC
Q 044580 64 GVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNI 120 (269)
Q Consensus 64 GVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i 120 (269)
|.-.+.+..+-|..++++.|+. .+...+|++++.+.......+.+.+..|+++
T Consensus 18 gla~raGKlv~G~~~vlkalk~----gkaklViiA~D~~~~~kkki~~~~~~~~Vpv 70 (108)
T PTZ00106 18 QLVMKSGKYTLGTKSTLKALRN----GKAKLVIISNNCPPIRRSEIEYYAMLSKTGV 70 (108)
T ss_pred HHHHHhCCeeecHHHHHHHHHc----CCeeEEEEeCCCCHHHHHHHHHHHhhcCCCE
Confidence 3445778899999999999997 3778899998876555555556656667774
No 243
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=64.00 E-value=6.9 Score=39.27 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=17.7
Q ss_pred CccEEEEecCceeecCCcccc
Q 044580 54 PSFGIAFDIDGVVLLGNTPIG 74 (269)
Q Consensus 54 ~~~a~lFDIDGVL~~G~~~iP 74 (269)
....++||+||||.+.....|
T Consensus 21 ~~~~~~FDfDGTLt~~~s~f~ 41 (497)
T PLN02177 21 SNQTVAADLDGTLLISRSAFP 41 (497)
T ss_pred cccEEEEecCCcccCCCCccH
Confidence 456799999999999887766
No 244
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=63.67 E-value=33 Score=27.91 Aligned_cols=86 Identities=17% Similarity=0.177 Sum_probs=41.6
Q ss_pred ccchHHHHHHHHhhcCCCCceEEEEeCCCC----CCHHHHHHHHHHHcCCCCCCCcEEc---chHH------HHHHHHhc
Q 044580 73 IGGSNKALKRLYQHSGDLRIPYIFLTNGGG----FRESKRATELSKLLGVNILPCQVVQ---GHSP------FKQLFNRF 139 (269)
Q Consensus 73 iPgA~eal~~L~~~~~~~gip~iflTN~~~----~se~~~a~~Ls~~lGi~i~~~qVi~---s~tp------~~~L~~~~ 139 (269)
.....+|++..++. ..+.+++|.+.+ .+|.+..++.....|++ ++.|+. +.+. ...+.+++
T Consensus 23 ~~R~~~a~~L~~~g----~~~~il~SGg~~~~~~~~ea~~~~~~l~~~gvp--~~~I~~e~~s~~T~ena~~~~~~~~~~ 96 (155)
T PF02698_consen 23 RERLDEAARLYKAG----YAPRILFSGGYGHGDGRSEAEAMRDYLIELGVP--EERIILEPKSTNTYENARFSKRLLKER 96 (155)
T ss_dssp HHHHHHHHHHHH-H----HT--EEEE--SSTTHTS-HHHHHHHHHHHT-----GGGEEEE----SHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHhcC----CCCeEEECCCCCCCCCCCHHHHHHHHHHhcccc--hheeEccCCCCCHHHHHHHHHHHHHhh
Confidence 34456677777763 677899997553 46777777665677866 567764 2222 22344455
Q ss_pred CCCeEEEEcCc-hh---HHHHhhcCceEe
Q 044580 140 ENEFIVAVGKG-EP---AAVMAEYGFKNV 164 (269)
Q Consensus 140 ~~k~VlvvG~~-~~---~~v~~~~Gf~~v 164 (269)
+-++|++|.+. .. ...++.+|....
T Consensus 97 ~~~~iilVT~~~H~~Ra~~~~~~~~~~~~ 125 (155)
T PF02698_consen 97 GWQSIILVTSPYHMRRARMIFRKVGPDAV 125 (155)
T ss_dssp SSS-EEEE--CCCHHHHHHHHHHHH--BT
T ss_pred cCCeEEEECCHHHHHHHHHHHHHhCCCCe
Confidence 55788888775 22 244667765543
No 245
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=62.95 E-value=14 Score=32.83 Aligned_cols=83 Identities=12% Similarity=0.126 Sum_probs=48.0
Q ss_pred cccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHH---------HHHHHHHHcCCCCCCCcEEc--c-hHHHHHHHHhc
Q 044580 72 PIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESK---------RATELSKLLGVNILPCQVVQ--G-HSPFKQLFNRF 139 (269)
Q Consensus 72 ~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~---------~a~~Ls~~lGi~i~~~qVi~--s-~tp~~~L~~~~ 139 (269)
-+|+..++++.|.+ .|+|+ ++||........ ++..+. ..|- +.+.. . ...+....+++
T Consensus 139 ~~~~~~~~l~~l~~----~g~~~-i~tN~d~~~~~~~~~~~~~g~~~~~i~-~~g~----~~~~~gKP~~~~~~~~~~~~ 208 (242)
T TIGR01459 139 DLDEFDELFAPIVA----RKIPN-ICANPDRGINQHGIYRYGAGYYAELIK-QLGG----KVIYSGKPYPAIFHKALKEC 208 (242)
T ss_pred CHHHHHHHHHHHHh----CCCcE-EEECCCEeccCCCceEecccHHHHHHH-HhCC----cEecCCCCCHHHHHHHHHHc
Confidence 47899999998876 48997 779975432211 111111 1221 12222 1 24555555665
Q ss_pred C---CCeEEEEcCch--hHHHHhhcCceEe
Q 044580 140 E---NEFIVAVGKGE--PAAVMAEYGFKNV 164 (269)
Q Consensus 140 ~---~k~VlvvG~~~--~~~v~~~~Gf~~v 164 (269)
+ ...+++||+.- ...-++.+|++.+
T Consensus 209 ~~~~~~~~~~vGD~~~~Di~~a~~~G~~~i 238 (242)
T TIGR01459 209 SNIPKNRMLMVGDSFYTDILGANRLGIDTA 238 (242)
T ss_pred CCCCcccEEEECCCcHHHHHHHHHCCCeEE
Confidence 4 23688899762 3455788898764
No 246
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=62.16 E-value=39 Score=33.38 Aligned_cols=86 Identities=19% Similarity=0.255 Sum_probs=54.0
Q ss_pred cCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCC--CCCCcEEcchHHHHHHHHhc
Q 044580 62 IDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVN--ILPCQVVQGHSPFKQLFNRF 139 (269)
Q Consensus 62 IDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~--i~~~qVi~s~tp~~~L~~~~ 139 (269)
.=|.+.-.+.+-|++.++++.|++ .|+.++++|.... ..+..+.+.+|+. ..|++ -....+.+. .
T Consensus 338 ~~g~i~l~d~lr~~~~~~i~~l~~----~gi~~~~ltGD~~----~~a~~ia~~lgi~~~~~p~~---K~~~v~~l~--~ 404 (499)
T TIGR01494 338 LLGLLGLEDPLRDDAKETISELRE----AGIRVIMLTGDNV----LTAKAIAKELGIFARVTPEE---KAALVEALQ--K 404 (499)
T ss_pred EEEEEEecCCCchhHHHHHHHHHH----CCCeEEEEcCCCH----HHHHHHHHHcCceeccCHHH---HHHHHHHHH--H
Confidence 446667788999999999999998 5999999997642 4455666677761 11111 012233332 2
Q ss_pred CCCeEEEEcCch-hHHHHhhcC
Q 044580 140 ENEFIVAVGKGE-PAAVMAEYG 160 (269)
Q Consensus 140 ~~k~VlvvG~~~-~~~v~~~~G 160 (269)
.+..|.++|++- +...++.++
T Consensus 405 ~g~~v~~vGDg~nD~~al~~Ad 426 (499)
T TIGR01494 405 KGRVVAMTGDGVNDAPALKKAD 426 (499)
T ss_pred CCCEEEEECCChhhHHHHHhCC
Confidence 346789999873 344444443
No 247
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=61.92 E-value=56 Score=29.59 Aligned_cols=15 Identities=20% Similarity=0.410 Sum_probs=13.1
Q ss_pred EEEEecCceeecCCc
Q 044580 57 GIAFDIDGVVLLGNT 71 (269)
Q Consensus 57 a~lFDIDGVL~~G~~ 71 (269)
.++||-||||+..+.
T Consensus 2 LvvfDFD~TIvd~ds 16 (234)
T PF06888_consen 2 LVVFDFDHTIVDQDS 16 (234)
T ss_pred EEEEeCCCCccCCcc
Confidence 589999999999774
No 248
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=60.60 E-value=16 Score=27.52 Aligned_cols=49 Identities=14% Similarity=0.226 Sum_probs=33.9
Q ss_pred ecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCC
Q 044580 67 LLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVN 119 (269)
Q Consensus 67 ~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~ 119 (269)
.+.+..+-|..++++.|++. +...+|+.++.+..-......+.+..+++
T Consensus 7 ~ragkl~~G~~~v~kai~~g----kaklViiA~D~~~~~~~~i~~~c~~~~Vp 55 (82)
T PRK13602 7 SQAKSIVIGTKQTVKALKRG----SVKEVVVAEDADPRLTEKVEALANEKGVP 55 (82)
T ss_pred HhcCCEEEcHHHHHHHHHcC----CeeEEEEECCCCHHHHHHHHHHHHHcCCC
Confidence 46778899999999999973 78889999887443333333344444554
No 249
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=60.24 E-value=15 Score=29.13 Aligned_cols=41 Identities=12% Similarity=0.271 Sum_probs=28.8
Q ss_pred CCccEEEEecCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCC
Q 044580 53 RPSFGIAFDIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGG 101 (269)
Q Consensus 53 ~~~~a~lFDIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~ 101 (269)
...-++++|+| ......+.+.++.++.. +.++|++++++..
T Consensus 37 ~~i~avvi~~d------~~~~~~~~~ll~~i~~~--~~~iPVFl~~~~~ 77 (115)
T PF03709_consen 37 TDIAAVVISWD------GEEEDEAQELLDKIRER--NFGIPVFLLAERD 77 (115)
T ss_dssp TTEEEEEEECH------HHHHHHHHHHHHHHHHH--STT-EEEEEESCC
T ss_pred CCeeEEEEEcc------cccchhHHHHHHHHHHh--CCCCCEEEEecCC
Confidence 36789999999 33344556667777664 5799999999843
No 250
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=58.67 E-value=30 Score=33.70 Aligned_cols=85 Identities=19% Similarity=0.069 Sum_probs=49.5
Q ss_pred hHHHHHHHHhhcCCCCceEEEEeC-CCCCCHHHHHHHHHHHcCCCCCCCcEEcch-HHHH---HHHHhcCCCeEEEEcCc
Q 044580 76 SNKALKRLYQHSGDLRIPYIFLTN-GGGFRESKRATELSKLLGVNILPCQVVQGH-SPFK---QLFNRFENEFIVAVGKG 150 (269)
Q Consensus 76 A~eal~~L~~~~~~~gip~iflTN-~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~-tp~~---~L~~~~~~k~VlvvG~~ 150 (269)
+..+-+.|+++ .|+|++.+.. -|-.......++|.+.+|.++. +.+.... ..+. .......+|++++.|..
T Consensus 234 g~~~A~~L~e~---~giP~~~~~~P~G~~~t~~~l~~l~~~~g~~~~-~~i~~~~~~~~~~~~d~~~~l~gkrv~v~g~~ 309 (429)
T cd03466 234 GLSAGSYLEEE---FGIPNYRLPLPIGLRATDEFMSLLSKLTGKPIP-EKYTRERGRLLDAMIDAHKYNFGRKAAIYGEP 309 (429)
T ss_pred hHHHHHHHHHH---HCCCeeecCCCcChHHHHHHHHHHHHHHCCCcC-HHHHHHHHHHHHHHHHHHHhcCCCEEEEEcCH
Confidence 34455666664 7999877654 3334455666777777787653 2221111 1111 11223467899998875
Q ss_pred h----hHHHHhhcCceEe
Q 044580 151 E----PAAVMAEYGFKNV 164 (269)
Q Consensus 151 ~----~~~v~~~~Gf~~v 164 (269)
. ..+.+.++|++.+
T Consensus 310 ~~~~~l~~~L~elG~~~~ 327 (429)
T cd03466 310 DFVVAITRFVLENGMVPV 327 (429)
T ss_pred HHHHHHHHHHHHCCCEEE
Confidence 3 3566889999874
No 251
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=58.62 E-value=38 Score=28.41 Aligned_cols=58 Identities=16% Similarity=0.206 Sum_probs=41.2
Q ss_pred cEE-EEecCceeecC-CccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCC
Q 044580 56 FGI-AFDIDGVVLLG-NTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVN 119 (269)
Q Consensus 56 ~a~-lFDIDGVL~~G-~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~ 119 (269)
-|+ ++|+||-|+.- ..--..-.+.++.+.+ .|+|+++-|-=.-.+ +.+++|...+|-.
T Consensus 43 tgiAildL~G~~l~l~S~R~~~~~evi~~I~~----~G~PviVAtDV~p~P--~~V~Kia~~f~A~ 102 (138)
T PF04312_consen 43 TGIAILDLDGELLDLKSSRNMSRSEVIEWISE----YGKPVIVATDVSPPP--ETVKKIARSFNAV 102 (138)
T ss_pred eEEEEEecCCcEEEEEeecCCCHHHHHHHHHH----cCCEEEEEecCCCCc--HHHHHHHHHhCCc
Confidence 344 67999988752 2233456677888887 699999999876443 5688887777654
No 252
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=58.33 E-value=5.1 Score=34.89 Aligned_cols=19 Identities=32% Similarity=0.412 Sum_probs=15.4
Q ss_pred ccEEEEecCceeecCCccc
Q 044580 55 SFGIAFDIDGVVLLGNTPI 73 (269)
Q Consensus 55 ~~a~lFDIDGVL~~G~~~i 73 (269)
...|+||.||||.+....+
T Consensus 3 ~~~vifDfDgTi~~~d~~~ 21 (219)
T PRK09552 3 SIQIFCDFDGTITNNDNII 21 (219)
T ss_pred CcEEEEcCCCCCCcchhhH
Confidence 3489999999999987543
No 253
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=58.18 E-value=64 Score=27.70 Aligned_cols=32 Identities=19% Similarity=0.259 Sum_probs=21.1
Q ss_pred EecCceeecCCccccchHHHHHHHHhhcCCCCceEEEEe
Q 044580 60 FDIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLT 98 (269)
Q Consensus 60 FDIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflT 98 (269)
-.+||+++-+... ..++++.+.. .++|++++-
T Consensus 54 ~~vdgiii~~~~~---~~~~~~~~~~----~~ipvv~~~ 85 (268)
T cd01575 54 RRPAGLILTGLEH---TERTRQLLRA----AGIPVVEIM 85 (268)
T ss_pred cCCCEEEEeCCCC---CHHHHHHHHh----cCCCEEEEe
Confidence 3567777765432 1456777766 499999884
No 254
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=57.12 E-value=82 Score=27.03 Aligned_cols=33 Identities=30% Similarity=0.542 Sum_probs=22.2
Q ss_pred ecCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeC
Q 044580 61 DIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTN 99 (269)
Q Consensus 61 DIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN 99 (269)
.+||+++.+.. +...++++.+.. .|+|++++-+
T Consensus 55 ~vdgiii~~~~--~~~~~~~~~~~~----~~ipvV~~~~ 87 (268)
T cd06289 55 GVAGIILCPAA--GTSPDLLKRLAE----SGIPVVLVAR 87 (268)
T ss_pred CCCEEEEeCCC--CccHHHHHHHHh----cCCCEEEEec
Confidence 36888876532 233457777776 4999999854
No 255
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=56.73 E-value=40 Score=33.73 Aligned_cols=70 Identities=14% Similarity=0.091 Sum_probs=42.2
Q ss_pred CccEEEEecCceeecCCcc------------ccchHHHHHHHHhhcCCCCceEEEEeCCCC---CCHHHHHHHHHHHcCC
Q 044580 54 PSFGIAFDIDGVVLLGNTP------------IGGSNKALKRLYQHSGDLRIPYIFLTNGGG---FRESKRATELSKLLGV 118 (269)
Q Consensus 54 ~~~a~lFDIDGVL~~G~~~------------iPgA~eal~~L~~~~~~~gip~iflTN~~~---~se~~~a~~Ls~~lGi 118 (269)
..+-+++||||||...+.. .-|.+...-.+. +.|..+.++|-.+- .+...+..-. ++-|.
T Consensus 374 n~kiVVsDiDGTITkSD~~Ghv~~miGkdwth~gVAkLYtdI~----rNGYkI~YltsR~~Gqa~sTrsylrni-eQngy 448 (580)
T COG5083 374 NKKIVVSDIDGTITKSDALGHVKQMIGKDWTHNGVAKLYTDID----RNGYKIKYLTSRSYGQADSTRSYLRNI-EQNGY 448 (580)
T ss_pred CCcEEEEecCCcEEehhhHHHHHHHhccchhhcchhhhhhhhc----cCceEEEEEecccccchhhhhhHHHhh-hhcCc
Confidence 4678999999999986521 122222222222 35889999997652 3334444444 46677
Q ss_pred CCCCCcEEcc
Q 044580 119 NILPCQVVQG 128 (269)
Q Consensus 119 ~i~~~qVi~s 128 (269)
.+...-|++|
T Consensus 449 kLpdgpviLs 458 (580)
T COG5083 449 KLPDGPVILS 458 (580)
T ss_pred cCCCCCEeec
Confidence 6666666664
No 256
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=56.64 E-value=17 Score=30.06 Aligned_cols=38 Identities=11% Similarity=0.254 Sum_probs=31.2
Q ss_pred cchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCC
Q 044580 74 GGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVN 119 (269)
Q Consensus 74 PgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~ 119 (269)
|+|.+.|+.+++ .|++++++|.+ ....++.+.+.+|++
T Consensus 92 ~~~~e~i~~~~~----~~~~v~IvS~~----~~~~i~~~~~~~~i~ 129 (192)
T PF12710_consen 92 PDAMELIRELKD----NGIKVVIVSGS----PDEIIEPIAERLGID 129 (192)
T ss_dssp TTHHHHHHHHHH----TTSEEEEEEEE----EHHHHHHHHHHTTSS
T ss_pred hhHHHHHHHHHH----CCCEEEEECCC----cHHHHHHHHHHcCCC
Confidence 888899999988 49999999976 446677776788886
No 257
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=56.52 E-value=28 Score=33.91 Aligned_cols=85 Identities=18% Similarity=0.184 Sum_probs=51.2
Q ss_pred HHHHHHHHhhcCCCCceEEEEe-CCCCCCHHHHHHHHHHHcCCCCCCCcEEcch----HHHHHHHHhcCCCeEEEEcCch
Q 044580 77 NKALKRLYQHSGDLRIPYIFLT-NGGGFRESKRATELSKLLGVNILPCQVVQGH----SPFKQLFNRFENEFIVAVGKGE 151 (269)
Q Consensus 77 ~eal~~L~~~~~~~gip~iflT-N~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~----tp~~~L~~~~~~k~VlvvG~~~ 151 (269)
..+-+.|.++ .|+|++.+. =-|-....+..+.|.+.+|.++ ++.+.... ..+........++++.+.|++.
T Consensus 235 ~~~a~~Lee~---~GiP~~~~~~p~G~~~T~~~L~~la~~~g~~~-~~~i~~er~~~~~~~~d~~~~l~gkrvai~~~~~ 310 (417)
T cd01966 235 RKAAEALEER---TGVPYYVFPSLTGLEAVDALIATLAKLSGRPV-PEKIRRQRAQLQDAMLDGHFYLGGKRVAIALEPD 310 (417)
T ss_pred HHHHHHHHHH---HCCCeeecCCCcchHHHHHHHHHHHHHHCCCc-CHHHHHHHHHHHHHHHHHHHHhCCcEEEEEeCHH
Confidence 3455566654 799987763 2333445566777777788776 33332211 2222233445788998888754
Q ss_pred ----hHHHHhhcCceEec
Q 044580 152 ----PAAVMAEYGFKNVL 165 (269)
Q Consensus 152 ----~~~v~~~~Gf~~v~ 165 (269)
....+.++|++.+.
T Consensus 311 ~~~~l~~~L~ElG~~~~~ 328 (417)
T cd01966 311 LLAALSSFLAEMGAEIVA 328 (417)
T ss_pred HHHHHHHHHHHCCCEEEE
Confidence 24558899998754
No 258
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=56.50 E-value=47 Score=36.46 Aligned_cols=48 Identities=21% Similarity=0.210 Sum_probs=36.7
Q ss_pred ceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCC
Q 044580 64 GVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVN 119 (269)
Q Consensus 64 GVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~ 119 (269)
|.+.--+.+=|++.++++.|++ .|+.++++|.....+ +..+.+.+|+.
T Consensus 639 G~~~~~Dp~r~~v~~aI~~l~~----aGIkv~MiTGD~~~t----A~~iA~~~Gi~ 686 (1053)
T TIGR01523 639 GLIGIYDPPRNESAGAVEKCHQ----AGINVHMLTGDFPET----AKAIAQEVGII 686 (1053)
T ss_pred EEEeeecCCchhHHHHHHHHHH----CCCEEEEECCCCHHH----HHHHHHHcCCC
Confidence 5666667788999999999999 599999999775444 34444667773
No 259
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=56.22 E-value=24 Score=34.03 Aligned_cols=88 Identities=18% Similarity=0.229 Sum_probs=52.0
Q ss_pred hHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCC---CCcEEcch-----HHHHHHHHhcCCCeEEEE
Q 044580 76 SNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNIL---PCQVVQGH-----SPFKQLFNRFENEFIVAV 147 (269)
Q Consensus 76 A~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~---~~qVi~s~-----tp~~~L~~~~~~k~Vlvv 147 (269)
+..+-+.|+++ +|+|++-.+=-|-..-.+..++|.+.+|.+.. .++++... ..+......+.+++|.+.
T Consensus 217 ~~~~a~~L~~~---fGip~~~~~p~G~~~t~~~l~~ia~~~g~~~~~~~~~~~i~~e~~~~~~~l~~~~~~l~gkrv~i~ 293 (410)
T cd01968 217 MIYLARKMEEK---YGIPYIEVSFYGIRDTSKSLRNIAELLGDEELIERTEELIAREEARLRPELAPYRARLEGKKAALY 293 (410)
T ss_pred HHHHHHHHHHH---hCCCeEecCcCcHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 34566667764 89999875412333344566667667787521 22333211 222233445678999888
Q ss_pred cCch----hHHHHhhcCceEecC
Q 044580 148 GKGE----PAAVMAEYGFKNVLS 166 (269)
Q Consensus 148 G~~~----~~~v~~~~Gf~~v~t 166 (269)
|+.. ..+.++++|++.+..
T Consensus 294 ~~~~~~~~la~~l~elGm~v~~~ 316 (410)
T cd01968 294 TGGVKSWSLVSALQDLGMEVVAT 316 (410)
T ss_pred cCCchHHHHHHHHHHCCCEEEEE
Confidence 7643 345689999997653
No 260
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=55.55 E-value=20 Score=34.98 Aligned_cols=84 Identities=7% Similarity=0.000 Sum_probs=52.1
Q ss_pred HHHHHHHhhcCCCCceEEEEeC-CCCCCHHHHHHHHHHHcCCCCC-CCcEEcc-----hHHHHHHHHhcCCCeEEEEcCc
Q 044580 78 KALKRLYQHSGDLRIPYIFLTN-GGGFRESKRATELSKLLGVNIL-PCQVVQG-----HSPFKQLFNRFENEFIVAVGKG 150 (269)
Q Consensus 78 eal~~L~~~~~~~gip~iflTN-~~~~se~~~a~~Ls~~lGi~i~-~~qVi~s-----~tp~~~L~~~~~~k~VlvvG~~ 150 (269)
.+-+.|++ .|+|++.+.- -|-....+..+.|.+.+|.+.+ -++.+.. ...+....+...+|+|.+.|.+
T Consensus 224 ~~A~~L~~----~GiP~~~~~~P~G~~~T~~~L~~la~~~g~~~~~~~~~~~~er~~~~~~l~~~~~~l~Gkrvai~g~~ 299 (427)
T PRK02842 224 DTARALRE----RGAKVLTAPFPLGPEGTRAWLEAAAAAFGIDPDGLEEREAPAWERARKALEPYRELLRGKRVFFLPDS 299 (427)
T ss_pred HHHHHHHH----cCCccccCCCCcChHHHHHHHHHHHHHhCcCHhHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEECCc
Confidence 46677743 6999987765 3444556677778777887653 1122221 1223334445678999998876
Q ss_pred h----hHHHHhh-cCceEec
Q 044580 151 E----PAAVMAE-YGFKNVL 165 (269)
Q Consensus 151 ~----~~~v~~~-~Gf~~v~ 165 (269)
. ....+.+ .|++.+.
T Consensus 300 ~~~~~la~~L~eelGm~~v~ 319 (427)
T PRK02842 300 QLEIPLARFLSRECGMELVE 319 (427)
T ss_pred hhHHHHHHHHHHhCCCEEEE
Confidence 4 3455666 9999864
No 261
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=55.54 E-value=1.2e+02 Score=27.88 Aligned_cols=111 Identities=14% Similarity=0.205 Sum_probs=69.3
Q ss_pred ceeecCCccccchHHHHHHHHhhc-CCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEc-c-------hHHHHH
Q 044580 64 GVVLLGNTPIGGSNKALKRLYQHS-GDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQ-G-------HSPFKQ 134 (269)
Q Consensus 64 GVL~~G~~~iPgA~eal~~L~~~~-~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~-s-------~tp~~~ 134 (269)
|.+--|+ -|....++.|.++- .+-+|-+..++.|....+++..+..+ .+=-+.+|+-++- | -+.++.
T Consensus 6 GiiKlGN---ig~s~~idl~lDErAdRedI~vrv~gsGaKm~pe~~~~~~~-~~~~~~~pDf~i~isPN~a~PGP~~ARE 81 (277)
T PRK00994 6 GIIKLGN---IGMSPVIDLLLDERADREDIDVRVVGSGAKMGPEEVEEVVK-KMLEEWKPDFVIVISPNPAAPGPKKARE 81 (277)
T ss_pred EEEEecc---cchHHHHHHHHHhhhcccCceEEEeccCCCCCHHHHHHHHH-HHHHhhCCCEEEEECCCCCCCCchHHHH
Confidence 3344444 45666677776643 45689999999999998888775554 2311334554432 2 255777
Q ss_pred HHHhcCCCeEEEEcCchh---HHHHhhcCceEecCccc--cccccccCCC
Q 044580 135 LFNRFENEFIVAVGKGEP---AAVMAEYGFKNVLSIDE--YASYFDGIDP 179 (269)
Q Consensus 135 L~~~~~~k~VlvvG~~~~---~~v~~~~Gf~~v~t~~d--~~~~~p~ldp 179 (269)
+.+.. +..+.|+|++.. .+.+++.||-.++-.-| +.+-..++||
T Consensus 82 ~l~~~-~iP~IvI~D~p~~K~~d~l~~~g~GYIivk~DpMIGArREFLDP 130 (277)
T PRK00994 82 ILKAA-GIPCIVIGDAPGKKVKDAMEEQGLGYIIVKADPMIGARREFLDP 130 (277)
T ss_pred HHHhc-CCCEEEEcCCCccchHHHHHhcCCcEEEEecCccccchhhccCH
Confidence 66554 447888888643 37788888777654444 4455556777
No 262
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=55.48 E-value=24 Score=30.96 Aligned_cols=40 Identities=10% Similarity=-0.064 Sum_probs=29.4
Q ss_pred ccccchHHHHH-HHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCC
Q 044580 71 TPIGGSNKALK-RLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGV 118 (269)
Q Consensus 71 ~~iPgA~eal~-~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi 118 (269)
.+.|||.+.|+ .+++ .|.+++++||.. +.+++.+.+.+|+
T Consensus 94 ~l~pga~e~L~~~l~~----~G~~v~IvSas~----~~~~~~ia~~~~~ 134 (210)
T TIGR01545 94 TAFPLVAERLRQYLES----SDADIWLITGSP----QPLVEAVYFDSNF 134 (210)
T ss_pred CCCccHHHHHHHHHHh----CCCEEEEEcCCc----HHHHHHHHHhccc
Confidence 56899999996 7776 499999999974 4455555545443
No 263
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=55.29 E-value=19 Score=31.15 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=16.6
Q ss_pred CccEEEEecCCccchhhHHHHHHHHHhCC
Q 044580 209 RVQAAFIVSDSVDWSRDIQVLCDILRTGG 237 (269)
Q Consensus 209 ~i~AI~v~~Dp~dW~~diQii~DlL~s~G 237 (269)
+++|||..+|+.-++ ++..+...|
T Consensus 174 ~~~ai~~~~d~~a~g-----~~~~~~~~g 197 (264)
T cd01574 174 DPTAVFAANDQMALG-----VLRALHELG 197 (264)
T ss_pred CCcEEEEcCcHHHHH-----HHHHHHHcC
Confidence 389999887764333 677777755
No 264
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=55.16 E-value=14 Score=33.59 Aligned_cols=25 Identities=24% Similarity=0.070 Sum_probs=20.0
Q ss_pred CCCccEEEEecCceeecCCccccch
Q 044580 52 QRPSFGIAFDIDGVVLLGNTPIGGS 76 (269)
Q Consensus 52 ~~~~~a~lFDIDGVL~~G~~~iPgA 76 (269)
.++++.|+||||-|||+-+.-|-.+
T Consensus 12 ~~~~~~l~FDiDdtLYp~St~i~~~ 36 (244)
T KOG3109|consen 12 GPNYKCLFFDIDDTLYPLSTGIQLM 36 (244)
T ss_pred CccceEEEEecccccccCchhHHHH
Confidence 3489999999999999987655443
No 265
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=54.52 E-value=30 Score=34.20 Aligned_cols=87 Identities=15% Similarity=0.171 Sum_probs=51.6
Q ss_pred hHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcch-----HHHHHHHHhcCCCeEEEEcCc
Q 044580 76 SNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGH-----SPFKQLFNRFENEFIVAVGKG 150 (269)
Q Consensus 76 A~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~-----tp~~~L~~~~~~k~VlvvG~~ 150 (269)
+..+-+.|.++ .|+|++-+.=-|-.......++|.+.+|++...+.++... .-+....+...+|+|.+.|++
T Consensus 258 ~~~~A~~Le~~---~GiP~~~~~~~G~~~T~~~l~~ia~~~g~~~~~e~~i~~~~~~~~~~ld~~~~~L~GkrvaI~~~~ 334 (457)
T TIGR01284 258 ANYIANELEER---YGIPRLDIDFFGFEYCAKNLRKIGEFFGIEERAERVIEEEMAKWKPELDWYKERLRGKKVWVWSGG 334 (457)
T ss_pred HHHHHHHHHHH---hCCCeEecccCCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 34456667664 7999986642333334466677777788764444444421 112223345678999887665
Q ss_pred hh----HHHHh-hcCceEec
Q 044580 151 EP----AAVMA-EYGFKNVL 165 (269)
Q Consensus 151 ~~----~~v~~-~~Gf~~v~ 165 (269)
.. ...+. ++|++.+.
T Consensus 335 ~~~~~l~~~l~~ElGmevv~ 354 (457)
T TIGR01284 335 PKLWHWPRPLEDELGMEVVA 354 (457)
T ss_pred cHHHHHHHHHHHhCCCEEEE
Confidence 32 24454 79998864
No 266
>COG0566 SpoU rRNA methylases [Translation, ribosomal structure and biogenesis]
Probab=54.47 E-value=14 Score=33.76 Aligned_cols=96 Identities=17% Similarity=0.136 Sum_probs=53.6
Q ss_pred EEEecCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcchHH-HHHHH
Q 044580 58 IAFDIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGHSP-FKQLF 136 (269)
Q Consensus 58 ~lFDIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~tp-~~~L~ 136 (269)
-+|-+|||++.....-|-...+++.-.. .-..+|++-+||. .....+.+ +..|+.+ +-++... ..+..
T Consensus 131 ~a~Gv~~Vi~~~~~~~~~~~~v~r~s~G--a~~~vp~~~~~n~----~~~~~~~~-~~~G~~v----~~t~~~~~~~~~~ 199 (260)
T COG0566 131 DAFGVDGVILPKRRADPLNPKVIRASAG--AAFHVPVIRVTNL----ARTLLELL-KEAGFWV----VATSLDGEVDLYE 199 (260)
T ss_pred HHhCCCEEEECCCccCCccceeEEecCC--hheeceeEEEecc----HHHHHHHH-HHcCeEE----EEECCCCCcchhh
Confidence 4556889998776543222222211111 1247899999993 33444444 5688853 2233333 22233
Q ss_pred HhcCCCeEEEEcCchh---HHHHhhcCceEe
Q 044580 137 NRFENEFIVAVGKGEP---AAVMAEYGFKNV 164 (269)
Q Consensus 137 ~~~~~k~VlvvG~~~~---~~v~~~~Gf~~v 164 (269)
..+.++.++|+|+.+. ..+++.+.+...
T Consensus 200 ~~~~~~~aLvlG~Eg~Gls~~~~~~~D~~v~ 230 (260)
T COG0566 200 TDLPKKTALVLGNEGEGLSRLLLEHADQLVR 230 (260)
T ss_pred ccccCCEEEEECCCCCCcCHHHHhhCCEEEE
Confidence 4566889999998643 456666665443
No 267
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=54.41 E-value=43 Score=31.64 Aligned_cols=86 Identities=19% Similarity=0.276 Sum_probs=53.3
Q ss_pred hHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcc-h----HHHHHHHHhcCCCeEEEEcCc
Q 044580 76 SNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQG-H----SPFKQLFNRFENEFIVAVGKG 150 (269)
Q Consensus 76 A~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s-~----tp~~~L~~~~~~k~VlvvG~~ 150 (269)
+..+-+.|.++ .|+|++...=-|-.......+.|.+.+|+..+.++++.. . ..+....+...++++++.|.+
T Consensus 212 g~~~a~~l~~~---~g~p~~~~~p~G~~~t~~~l~~i~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~l~g~~~~i~~~~ 288 (399)
T cd00316 212 GLYLARYLEEK---YGIPYILINPIGLEATDAFLRKLAELFGIEKEVPEVIARERARLLDALADYHEYLGGKKVAIFGDG 288 (399)
T ss_pred HHHHHHHHHHH---hCCCeEEeCCcCHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCC
Confidence 45556666664 799998877333344556667777778863333344431 1 233334455678899888876
Q ss_pred h----hHHHHhhcCceEe
Q 044580 151 E----PAAVMAEYGFKNV 164 (269)
Q Consensus 151 ~----~~~v~~~~Gf~~v 164 (269)
. ....+.++|++.+
T Consensus 289 ~~~~~~~~~l~e~G~~v~ 306 (399)
T cd00316 289 DLLLALARFLLELGMEVV 306 (399)
T ss_pred cHHHHHHHHHHHCCCEEE
Confidence 3 2456888998865
No 268
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=54.41 E-value=31 Score=33.45 Aligned_cols=87 Identities=14% Similarity=0.137 Sum_probs=52.1
Q ss_pred hHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcc-h----HHHHHHHHhcCCCeEEEEcCc
Q 044580 76 SNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQG-H----SPFKQLFNRFENEFIVAVGKG 150 (269)
Q Consensus 76 A~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s-~----tp~~~L~~~~~~k~VlvvG~~ 150 (269)
+..+-+.|+++ +|+|++-+.=-|-..-.+..+.|.+.+|.+.+.+.++.. . .-+........+|+|.+.|..
T Consensus 221 ~~~~A~~L~er---~GiP~~~~~~~G~~~t~~~l~~la~~~g~~~~~e~~i~~~~~~~r~~l~~~~~~l~Gk~vai~~~~ 297 (415)
T cd01977 221 AGYIANELKKR---YGIPRLDVDGFGFEYCAESLRKIGAFFGIEDRAEAVIAEEMAKWKPELDWYKERLKGKKVCIWTGG 297 (415)
T ss_pred HHHHHHHHHHH---hCCCeEEeccCCHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 45566777764 899998664223333446666777778877554444432 1 112223345678999887754
Q ss_pred h----hHHHH-hhcCceEec
Q 044580 151 E----PAAVM-AEYGFKNVL 165 (269)
Q Consensus 151 ~----~~~v~-~~~Gf~~v~ 165 (269)
. ....+ +++|++.+.
T Consensus 298 ~~~~~la~~l~~elG~~v~~ 317 (415)
T cd01977 298 PKLWHWTKVIEDELGMQVVA 317 (415)
T ss_pred chHHHHHHHHHHhcCCEEEE
Confidence 3 23456 489998764
No 269
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=53.53 E-value=36 Score=31.95 Aligned_cols=49 Identities=20% Similarity=0.298 Sum_probs=36.5
Q ss_pred ceeecCCccc--cchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCC
Q 044580 64 GVVLLGNTPI--GGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGV 118 (269)
Q Consensus 64 GVL~~G~~~i--PgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi 118 (269)
.+.+.|++|+ |+..+.++.+++ .|+.+.+.|||...++ +.+++|. ..|+
T Consensus 56 ~v~~~GGEPll~~~~~~ii~~~~~----~g~~~~l~TNG~ll~~-e~~~~L~-~~g~ 106 (358)
T TIGR02109 56 QLHFSGGEPLARPDLVELVAHARR----LGLYTNLITSGVGLTE-ARLDALA-DAGL 106 (358)
T ss_pred EEEEeCccccccccHHHHHHHHHH----cCCeEEEEeCCccCCH-HHHHHHH-hCCC
Confidence 3556677764 777888888887 4888999999987775 5677784 5665
No 270
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=53.21 E-value=27 Score=34.83 Aligned_cols=67 Identities=21% Similarity=0.353 Sum_probs=48.5
Q ss_pred CCCccEEEEecCceeecCC--ccccchHHHHHHHHhhcCCCCceEEEEeCCCCCC---HHHHHHHHHHHcCCCCCC
Q 044580 52 QRPSFGIAFDIDGVVLLGN--TPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFR---ESKRATELSKLLGVNILP 122 (269)
Q Consensus 52 ~~~~~a~lFDIDGVL~~G~--~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~s---e~~~a~~Ls~~lGi~i~~ 122 (269)
.+..-|++.-.||.+-.=. .-++.-.+.++.|++ .|+||++|=|..... ..+.+++|+++.|+++-|
T Consensus 143 dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ELk~----igKPFvillNs~~P~s~et~~L~~eL~ekY~vpVlp 214 (492)
T PF09547_consen 143 DHSTIGIVVTTDGSITDIPRENYVEAEERVIEELKE----IGKPFVILLNSTKPYSEETQELAEELEEKYDVPVLP 214 (492)
T ss_pred cCCceeEEEecCCCccCCChHHHHHHHHHHHHHHHH----hCCCEEEEEeCCCCCCHHHHHHHHHHHHHhCCcEEE
Confidence 4567899999999987533 345556677999998 799999999986432 234566777777887543
No 271
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=52.94 E-value=33 Score=32.51 Aligned_cols=50 Identities=20% Similarity=0.329 Sum_probs=37.0
Q ss_pred ceeecCCccc--cchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCC
Q 044580 64 GVVLLGNTPI--GGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVN 119 (269)
Q Consensus 64 GVL~~G~~~i--PgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~ 119 (269)
.|.+.|++|+ |...+.++.+++ .|+.+.+.||+...++ +.+++|. ..|+.
T Consensus 65 ~v~~~GGEPll~~~~~~il~~~~~----~g~~~~i~TNG~ll~~-~~~~~L~-~~g~~ 116 (378)
T PRK05301 65 QLHFSGGEPLLRKDLEELVAHARE----LGLYTNLITSGVGLTE-ARLAALK-DAGLD 116 (378)
T ss_pred EEEEECCccCCchhHHHHHHHHHH----cCCcEEEECCCccCCH-HHHHHHH-HcCCC
Confidence 3556677775 778888888887 4888899999987776 4677884 66653
No 272
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=52.67 E-value=18 Score=31.70 Aligned_cols=35 Identities=31% Similarity=0.452 Sum_probs=22.4
Q ss_pred ecCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCC
Q 044580 61 DIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNG 100 (269)
Q Consensus 61 DIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~ 100 (269)
.+||+++..... ....++++.+.+ .|+|++++.+.
T Consensus 57 ~vdgiii~~~~~-~~~~~~l~~~~~----~~ipvV~~~~~ 91 (271)
T cd06312 57 KPDGIVVTIPDP-DALDPAIKRAVA----AGIPVISFNAG 91 (271)
T ss_pred CCCEEEEeCCCh-HHhHHHHHHHHH----CCCeEEEeCCC
Confidence 467777754321 223456777776 48999998653
No 273
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=52.62 E-value=60 Score=30.10 Aligned_cols=70 Identities=13% Similarity=0.204 Sum_probs=47.5
Q ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEc-chHHHHHHHHhcCCCeEEEEcCchhHHHHhhcCceE
Q 044580 90 LRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQ-GHSPFKQLFNRFENEFIVAVGKGEPAAVMAEYGFKN 163 (269)
Q Consensus 90 ~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~-s~tp~~~L~~~~~~k~VlvvG~~~~~~v~~~~Gf~~ 163 (269)
.-+.+|+||+|+-.|--.....+ +..|++|+- -+++ +..|..||. -|+- ..++.......+.+-+.|+--
T Consensus 35 ~~VEVVllSRNspdTGlRv~nSI-~hygL~ItR-~~ft~G~~~~~Yl~-af~v-~LFLSan~~DV~~Ai~~G~~A 105 (264)
T PF06189_consen 35 PLVEVVLLSRNSPDTGLRVFNSI-RHYGLDITR-AAFTGGESPYPYLK-AFNV-DLFLSANEDDVQEAIDAGIPA 105 (264)
T ss_pred CceEEEEEecCCHHHHHHHHHhH-HHhCCccee-eeecCCCCHHHHHH-HhCC-ceEeeCCHHHHHHHHHcCCCc
Confidence 46778999999877777777777 588999863 3444 448888774 4433 355566666666677777544
No 274
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=52.34 E-value=38 Score=37.25 Aligned_cols=64 Identities=17% Similarity=0.035 Sum_probs=39.6
Q ss_pred cEEEEecCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCC-CCCcEEc
Q 044580 56 FGIAFDIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNI-LPCQVVQ 127 (269)
Q Consensus 56 ~a~lFDIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i-~~~qVi~ 127 (269)
..|+.|||++ .| -...-.+.++.++.+.....+-|++.| |++.++..+.| +..|++. +|+-+|+
T Consensus 773 ~via~D~d~~--~~--~~~~l~~~~~~~~~~~~~~~igfv~aT---GR~l~~~~~~l-~~~~lp~~~PD~lI~ 837 (1050)
T TIGR02468 773 FVIAVDCYDD--KD--LLQIIKNIFEAVRKERMEGSSGFILST---SMTISEIQSFL-KSGGLNPTDFDALIC 837 (1050)
T ss_pred EEEEeccCCC--CC--hHHHHHHHHHHHhccccCCceEEEEEc---CCCHHHHHHHH-HhCCCCCCCCCEEEe
Confidence 4445899999 22 112222334444421122357778888 47788888888 5899975 7888887
No 275
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=51.86 E-value=12 Score=35.63 Aligned_cols=84 Identities=18% Similarity=0.339 Sum_probs=47.8
Q ss_pred HHHHHHhhcCCCCceEEEEeCCCCC-CHHHHHHHHHHHcCCCCCCCcEEcch----HHHHHHHHhcCCCeEEEEcCch--
Q 044580 79 ALKRLYQHSGDLRIPYIFLTNGGGF-RESKRATELSKLLGVNILPCQVVQGH----SPFKQLFNRFENEFIVAVGKGE-- 151 (269)
Q Consensus 79 al~~L~~~~~~~gip~iflTN~~~~-se~~~a~~Ls~~lGi~i~~~qVi~s~----tp~~~L~~~~~~k~VlvvG~~~-- 151 (269)
+-+.|+++ .|+|++.+..--|. ......+++.+.+|.+..++.+.... ..+........++++++.|+..
T Consensus 207 ~a~~L~e~---~giP~~~~~~p~G~~~t~~~l~~i~~~lg~~~~~~~i~~~~~~~~~~l~~~~~~l~g~~v~i~~~~~~~ 283 (398)
T PF00148_consen 207 AAEWLEER---FGIPYLYFPSPYGIEGTDAWLRAIAEALGKPIAEAEIAEERERAEDALADYRERLGGKRVAIYGDPDRA 283 (398)
T ss_dssp HHHHHHHH---HT-EEEEEC-SBSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTT-EEEEESSHHHH
T ss_pred HHHHHHHH---hCCCeeeccccccHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHhhHHhhcCceEEEEcCchhH
Confidence 66666764 79999997654432 23456667777788443222222211 2222233345688999988853
Q ss_pred --hHHHHhhcCceEec
Q 044580 152 --PAAVMAEYGFKNVL 165 (269)
Q Consensus 152 --~~~v~~~~Gf~~v~ 165 (269)
+...+.++|++.+.
T Consensus 284 ~~l~~~L~elG~~v~~ 299 (398)
T PF00148_consen 284 LGLARFLEELGMEVVA 299 (398)
T ss_dssp HHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHcCCeEEE
Confidence 34668899998864
No 276
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=50.96 E-value=31 Score=33.85 Aligned_cols=87 Identities=13% Similarity=0.166 Sum_probs=50.0
Q ss_pred hHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcch-----HHHHHHHHhcCCCeEEEEcCc
Q 044580 76 SNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGH-----SPFKQLFNRFENEFIVAVGKG 150 (269)
Q Consensus 76 A~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~-----tp~~~L~~~~~~k~VlvvG~~ 150 (269)
+..+-+.|+++ .|+|++-+.=-|-..-....+.|.+.+|++...+.++... ..+......+.+|+|.+.+.+
T Consensus 250 ~~~~A~~L~er---~GiP~~~~~p~G~~~t~~~l~~la~~~gi~~~~e~~i~~~~~~~~~~l~~~~~~l~gkrvai~~~~ 326 (443)
T TIGR01862 250 ANYIANELEER---YGIPWMKIDFFGFTYTAESLRAIAAFFGIEKRAEEVIAEEKAKWKPELDYYKERLQGKRVCLYIGG 326 (443)
T ss_pred HHHHHHHHHHH---hCCCeEecccCCHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEECCc
Confidence 34566677764 7999987652232334455666766778654323333321 222223345678888886543
Q ss_pred h----hHH-HHhhcCceEec
Q 044580 151 E----PAA-VMAEYGFKNVL 165 (269)
Q Consensus 151 ~----~~~-v~~~~Gf~~v~ 165 (269)
. ... .+.++|++.+.
T Consensus 327 ~~~~~~~~~ll~elGm~v~~ 346 (443)
T TIGR01862 327 SRLWHWIGSAEEDLGMEVVA 346 (443)
T ss_pred hhHHHHHHHHHHHCCCEEEE
Confidence 2 223 67799998764
No 277
>KOG1324 consensus Dihydrofolate reductase [Coenzyme transport and metabolism]
Probab=50.69 E-value=20 Score=31.51 Aligned_cols=64 Identities=20% Similarity=0.321 Sum_probs=37.8
Q ss_pred CcEEcc--h-HHHHHHHHh-c--CCCeEEEEcCchhHHHHhhcC------ceEecCccccccccccCCCCcchhhhh
Q 044580 123 CQVVQG--H-SPFKQLFNR-F--ENEFIVAVGKGEPAAVMAEYG------FKNVLSIDEYASYFDGIDPLAQYKKWN 187 (269)
Q Consensus 123 ~qVi~s--~-tp~~~L~~~-~--~~k~VlvvG~~~~~~v~~~~G------f~~v~t~~d~~~~~p~ldp~~~y~~~~ 187 (269)
++++++ . +++.-|.+. + .-.+|+|+|+++....+-..+ ++.+...-|.+..+|.+|-. .|++|.
T Consensus 86 ~~~~~~~slesAl~lL~~pp~~~~ve~vfvIGG~~vy~~al~~p~~~~i~~T~I~~~~~cDtffP~id~s-~y~~~~ 161 (190)
T KOG1324|consen 86 ENVFLSSSLESALDLLEEPPSSNSVEMVFVIGGSEVYSEALNSPRCDAIHITEIFQSFECDTFFPAIDTS-SYEKWD 161 (190)
T ss_pred cCEEEeccHHHHHHhhcCCccccceeEEEEEcCHHHHHHHHcCcCcceEEEEEecccCCcccccccCChH-Hhchhh
Confidence 446663 3 456545444 2 236899999998865544433 33333344566677888764 466664
No 278
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=50.68 E-value=38 Score=34.61 Aligned_cols=77 Identities=21% Similarity=0.347 Sum_probs=55.6
Q ss_pred cCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcchHHHHHH---H-H
Q 044580 62 IDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGHSPFKQL---F-N 137 (269)
Q Consensus 62 IDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~tp~~~L---~-~ 137 (269)
+-||++.-+..-||-+|=+..|++ +|++.+.+|...-.|.+..+ ++.|++ +++--.+|-..+ . +
T Consensus 438 ~~GVI~LkDivK~Gi~ERf~elR~----MgIkTvM~TGDN~~TAa~IA----~EAGVD----dfiAeatPEdK~~~I~~e 505 (681)
T COG2216 438 ILGVIYLKDIVKPGIKERFAELRK----MGIKTVMITGDNPLTAAAIA----AEAGVD----DFIAEATPEDKLALIRQE 505 (681)
T ss_pred EEEEEEehhhcchhHHHHHHHHHh----cCCeEEEEeCCCHHHHHHHH----HHhCch----hhhhcCChHHHHHHHHHH
Confidence 558888888889999999999998 89999999987766655444 566775 444433443332 2 2
Q ss_pred hcCCCeEEEEcCc
Q 044580 138 RFENEFIVAVGKG 150 (269)
Q Consensus 138 ~~~~k~VlvvG~~ 150 (269)
+-++|.|-..|++
T Consensus 506 Q~~grlVAMtGDG 518 (681)
T COG2216 506 QAEGRLVAMTGDG 518 (681)
T ss_pred HhcCcEEEEcCCC
Confidence 4467788888876
No 279
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=50.64 E-value=38 Score=32.84 Aligned_cols=85 Identities=21% Similarity=0.242 Sum_probs=49.2
Q ss_pred hHHHHHHHHhhcCCCCceEEEEe-CCCCCCHHHHHHHHHHHcCCCCCCCcEEcch----HHHHHHHHhcCCCeEEEEcCc
Q 044580 76 SNKALKRLYQHSGDLRIPYIFLT-NGGGFRESKRATELSKLLGVNILPCQVVQGH----SPFKQLFNRFENEFIVAVGKG 150 (269)
Q Consensus 76 A~eal~~L~~~~~~~gip~iflT-N~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~----tp~~~L~~~~~~k~VlvvG~~ 150 (269)
+..+-+.|+++ .|+|++-+. =-|-.......+.|.+.+|.++. +.+.... ..+........+|+|.+.|..
T Consensus 233 ~~~~a~~L~e~---~GiP~~~~~~p~G~~~t~~~l~~l~~~~g~~~~-~~~~~~r~~~~~~~~~~~~~l~gk~v~i~~~~ 308 (428)
T cd01965 233 GRKAAKALEEK---FGVPYILFPTPIGLKATDEFLRALSKLSGKPIP-EELERERGRLLDAMLDSHFYLGGKRVAIAGDP 308 (428)
T ss_pred hHHHHHHHHHH---HCCCeeecCCCcChHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCh
Confidence 34455555553 789987665 22333345566667777787652 2222111 222223345678999988875
Q ss_pred h----hHHHHhhcCceEe
Q 044580 151 E----PAAVMAEYGFKNV 164 (269)
Q Consensus 151 ~----~~~v~~~~Gf~~v 164 (269)
. ..+.+.++|+..+
T Consensus 309 ~~~~~l~~~L~e~G~~v~ 326 (428)
T cd01965 309 DLLLGLSRFLLEMGAEPV 326 (428)
T ss_pred HHHHHHHHHHHHcCCcce
Confidence 3 3456889998875
No 280
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=50.17 E-value=29 Score=33.16 Aligned_cols=88 Identities=17% Similarity=0.245 Sum_probs=51.1
Q ss_pred chHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcch-----HHHHHHHHhcCCCeEEEEcC
Q 044580 75 GSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGH-----SPFKQLFNRFENEFIVAVGK 149 (269)
Q Consensus 75 gA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~-----tp~~~L~~~~~~k~VlvvG~ 149 (269)
-+..+.+.|.++ .|+|++...=-|-..-.+..+.|.+.+|.+-..++++... ..+..+.+...+++|.+.+.
T Consensus 218 ~~~~~a~~L~~r---~GiP~~~~~p~G~~~t~~~l~~l~~~lg~~~~~~~~i~~~~~~~~~~l~~~~~~l~gkrv~I~~~ 294 (406)
T cd01967 218 SMNYLAREMEER---YGIPYMEVNFYGFEDTSESLRKIAKFFGDEEKAEEVIAEEEARIKPELEKYRERLKGKKVIIYTG 294 (406)
T ss_pred HHHHHHHHHHHh---hCCCEEEecCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEcc
Confidence 345667777764 8999976542333444556667777788732222333211 22223334456788887765
Q ss_pred ch----hHHHHhhcCceEec
Q 044580 150 GE----PAAVMAEYGFKNVL 165 (269)
Q Consensus 150 ~~----~~~v~~~~Gf~~v~ 165 (269)
+. ....+.++|++.+.
T Consensus 295 ~~~~~~~~~~l~elG~~v~~ 314 (406)
T cd01967 295 GARSWHVIAALRELGMEVVA 314 (406)
T ss_pred CcchHHHHHHHHHcCCEEEE
Confidence 43 23568899998653
No 281
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=49.84 E-value=12 Score=37.69 Aligned_cols=21 Identities=19% Similarity=0.564 Sum_probs=17.3
Q ss_pred CccEEEEecCceeecCCcccc
Q 044580 54 PSFGIAFDIDGVVLLGNTPIG 74 (269)
Q Consensus 54 ~~~a~lFDIDGVL~~G~~~iP 74 (269)
....++||+||||.++....|
T Consensus 7 ~~~~~~fD~DGTLlrs~ssFp 27 (498)
T PLN02499 7 TSYSVVSELEGTLLKDADPFS 27 (498)
T ss_pred ccceEEEecccceecCCCccH
Confidence 456799999999999777655
No 282
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=49.70 E-value=1.1e+02 Score=26.46 Aligned_cols=34 Identities=21% Similarity=0.378 Sum_probs=21.4
Q ss_pred ecCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeC
Q 044580 61 DIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTN 99 (269)
Q Consensus 61 DIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN 99 (269)
.+||+++.+..+ ....+.++.+.+ .++|++++-+
T Consensus 56 ~vdgiii~~~~~-~~~~~~~~~~~~----~~ipvV~~~~ 89 (270)
T cd06308 56 GVDLLIISPNEA-APLTPVVEEAYR----AGIPVILLDR 89 (270)
T ss_pred CCCEEEEecCch-hhchHHHHHHHH----CCCCEEEeCC
Confidence 478888765331 112455677766 4999998854
No 283
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=49.45 E-value=29 Score=33.84 Aligned_cols=86 Identities=12% Similarity=0.145 Sum_probs=51.7
Q ss_pred HHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCC--CcEEcch-----HHHHHHHHhcCCCeEEEEcCc
Q 044580 78 KALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILP--CQVVQGH-----SPFKQLFNRFENEFIVAVGKG 150 (269)
Q Consensus 78 eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~--~qVi~s~-----tp~~~L~~~~~~k~VlvvG~~ 150 (269)
.+-+.|+++ +|+|++-+.=-|-..-.+..+.|.+.+|.++.. +.++... ..+....+...+|+|.+.|++
T Consensus 233 ~~a~~Le~~---fGiP~~~~~p~Gi~~t~~~l~~ia~~~g~~~~~~~e~~i~~e~~~~~~~l~~~~~~L~Gkrv~i~~g~ 309 (421)
T cd01976 233 YIARMMEEK---YGIPWMEYNFFGPTKIAESLRKIAAYFDDEITAKTEEVIAEYKPAMEAVIAKYRPRLEGKTVMLYVGG 309 (421)
T ss_pred HHHHHHHHH---hCCcEEecccCCHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 345566664 899998774223333456666777777876532 2334321 223333456688999888743
Q ss_pred ----hhHHHHhhcCceEecC
Q 044580 151 ----EPAAVMAEYGFKNVLS 166 (269)
Q Consensus 151 ----~~~~v~~~~Gf~~v~t 166 (269)
.....+++.|.+.+.+
T Consensus 310 ~~~~~~~~~l~elGmevv~~ 329 (421)
T cd01976 310 LRPRHYIGAYEDLGMEVVGT 329 (421)
T ss_pred CcHHHHHHHHHHCCCEEEEE
Confidence 2345688999998864
No 284
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=48.39 E-value=20 Score=32.66 Aligned_cols=29 Identities=17% Similarity=0.213 Sum_probs=20.6
Q ss_pred CCccEEEEecCceeecCCccccchHHHHH
Q 044580 53 RPSFGIAFDIDGVVLLGNTPIGGSNKALK 81 (269)
Q Consensus 53 ~~~~a~lFDIDGVL~~G~~~iPgA~eal~ 81 (269)
+..+++.||.+|||++-..+.+..-..+.
T Consensus 5 ~~iravtfD~~~tLl~~~~~~~~~y~~i~ 33 (237)
T KOG3085|consen 5 MRIRAVTFDAGGTLLATLPPVMEVYCEIA 33 (237)
T ss_pred cceEEEEEeCCCceeecCCccHHHHHHHH
Confidence 46789999999999986555444444433
No 285
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=48.01 E-value=38 Score=33.18 Aligned_cols=54 Identities=26% Similarity=0.241 Sum_probs=41.1
Q ss_pred ecCceeecCCc-c--ccchHHHHHHHHhhcCCCCceEEEE-eCCCCCCHHHHHHHHHHHcCCC
Q 044580 61 DIDGVVLLGNT-P--IGGSNKALKRLYQHSGDLRIPYIFL-TNGGGFRESKRATELSKLLGVN 119 (269)
Q Consensus 61 DIDGVL~~G~~-~--iPgA~eal~~L~~~~~~~gip~ifl-TN~~~~se~~~a~~Ls~~lGi~ 119 (269)
+.+||.+-|+. | .|...+.++.+++ .++++.+. ||+.+....+.+++|. .+|+.
T Consensus 73 ~~ggVtisGGGepl~~~~l~eLl~~lk~----~gi~taI~~TnG~~l~~~e~~~~L~-~~gld 130 (404)
T TIGR03278 73 RDTKVTISGGGDVSCYPELEELTKGLSD----LGLPIHLGYTSGKGFDDPEIAEFLI-DNGVR 130 (404)
T ss_pred CCCEEEEECCcccccCHHHHHHHHHHHh----CCCCEEEeCCCCcccCCHHHHHHHH-HcCCC
Confidence 46777777774 2 4788899999988 49999885 9998876767888884 66653
No 286
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=47.89 E-value=89 Score=25.71 Aligned_cols=89 Identities=17% Similarity=0.198 Sum_probs=48.8
Q ss_pred ccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEc----c---hHHHHHHHHhcCCCeEE
Q 044580 73 IGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQ----G---HSPFKQLFNRFENEFIV 145 (269)
Q Consensus 73 iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~----s---~tp~~~L~~~~~~k~Vl 145 (269)
++...+.++..++ .|+|++++...++.. .+....|. .+ ...+.|+. | .+.+..+.+..+-+.++
T Consensus 22 ~~~i~~l~~~ar~----~g~pVi~~~~~~~~~-g~~~~~l~-~~---~~~~~vi~K~~~saf~~t~L~~~L~~~gi~~li 92 (157)
T cd01012 22 INNTVKLAKAAKL----LDVPVILTEQYPKGL-GPTVPELR-EV---FPDAPVIEKTSFSCWEDEAFRKALKATGRKQVV 92 (157)
T ss_pred HHHHHHHHHHHHh----cCCCEEEEeeCCCCC-CCchHHHH-hh---CCCCCceecccccCcCCHHHHHHHHhcCCCEEE
Confidence 3444444444444 599999998764322 23455553 11 11233443 1 25566666666667888
Q ss_pred EEcCch--h----HHHHhhcCceEecCccccc
Q 044580 146 AVGKGE--P----AAVMAEYGFKNVLSIDEYA 171 (269)
Q Consensus 146 vvG~~~--~----~~v~~~~Gf~~v~t~~d~~ 171 (269)
++|-.. + ..-+...||+.++ +.|..
T Consensus 93 i~G~~T~~CV~~Ta~~a~~~g~~v~v-~~Da~ 123 (157)
T cd01012 93 LAGLETHVCVLQTALDLLEEGYEVFV-VADAC 123 (157)
T ss_pred EEEeeccHHHHHHHHHHHHCCCEEEE-EeeCC
Confidence 888642 2 1236778999765 34433
No 287
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=47.78 E-value=89 Score=25.88 Aligned_cols=35 Identities=14% Similarity=0.214 Sum_probs=22.8
Q ss_pred ecCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCC
Q 044580 61 DIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGG 101 (269)
Q Consensus 61 DIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~ 101 (269)
.+||++..+... .+..+.+.+.. .++|++++....
T Consensus 58 ~~d~ii~~~~~~--~~~~~~~~~~~----~~ip~v~~~~~~ 92 (269)
T cd01391 58 GVDGIIGPPSSS--SALAVVELAAA----AGIPVVSLDATA 92 (269)
T ss_pred CCCEEEecCCCH--HHHHHHHHHHH----cCCcEEEecCCC
Confidence 678888776542 22226666666 499999886543
No 288
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=47.76 E-value=8.6 Score=32.86 Aligned_cols=13 Identities=62% Similarity=0.667 Sum_probs=10.5
Q ss_pred EEEecCceeecCC
Q 044580 58 IAFDIDGVVLLGN 70 (269)
Q Consensus 58 ~lFDIDGVL~~G~ 70 (269)
|++||||||.+-.
T Consensus 5 I~iDiDgVLad~~ 17 (191)
T PF06941_consen 5 IAIDIDGVLADFN 17 (191)
T ss_dssp EEEESBTTTB-HH
T ss_pred EEEECCCCCcccH
Confidence 8999999998753
No 289
>PF12500 TRSP: TRSP domain C terminus to PRTase_2 ; InterPro: IPR022537 This domain is found in bacteria, and is typically between 174 and 217 amino acids in length. There is a conserved TRSP sequence motif.
Probab=47.76 E-value=64 Score=27.45 Aligned_cols=29 Identities=24% Similarity=0.306 Sum_probs=20.3
Q ss_pred HHHhcCCCeEEEEcCchh-------HHHHhhcCceE
Q 044580 135 LFNRFENEFIVAVGKGEP-------AAVMAEYGFKN 163 (269)
Q Consensus 135 L~~~~~~k~VlvvG~~~~-------~~v~~~~Gf~~ 163 (269)
+.....+++|+|+|++++ .+.|++.|+.+
T Consensus 51 l~~~~~~~~vLVLGTgEfMy~Pl~lA~~Le~~g~~V 86 (155)
T PF12500_consen 51 LAAKRPGERVLVLGTGEFMYLPLLLAEELEQAGADV 86 (155)
T ss_pred HHhhcCCCcEEEEccchHHHHHHHHHHHHHhcCCce
Confidence 444456789999999875 24577777544
No 290
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=46.33 E-value=45 Score=32.68 Aligned_cols=85 Identities=14% Similarity=0.111 Sum_probs=49.9
Q ss_pred hHHHHHHHHhhcCCCCceEEEEeCCCC-CCHHHHHHHHHHHcCCCCCCCcEEc-c----hHHHHHHHHhcCCCeEEEEcC
Q 044580 76 SNKALKRLYQHSGDLRIPYIFLTNGGG-FRESKRATELSKLLGVNILPCQVVQ-G----HSPFKQLFNRFENEFIVAVGK 149 (269)
Q Consensus 76 A~eal~~L~~~~~~~gip~iflTN~~~-~se~~~a~~Ls~~lGi~i~~~qVi~-s----~tp~~~L~~~~~~k~VlvvG~ 149 (269)
+..+-+.|+++ .|+|++-+..--| ..-....+.|.+.+|.++.. .+. . ...+.......++|+|.+.|+
T Consensus 245 ~~~~a~~Lee~---~giP~~~~~~p~G~~~t~~~l~~l~~~~g~~~~~--~~~~~r~~~~~~l~~~~~~l~Gkrvai~~~ 319 (432)
T TIGR01285 245 MRRAASLLADR---CGVPYIVFPSLMGLEAVDAFLHVLMKISGRAVPE--RFERQRRQLQDAMLDTHFFLGGKKVAIAAE 319 (432)
T ss_pred HHHHHHHHHHH---HCCCeEecCCCcChHHHHHHHHHHHHHHCCCccH--HHHHHHHHHHHHHHHHHHhhCCCEEEEEcC
Confidence 34455666664 7999886643222 33445577777778876531 111 1 122223334457889988886
Q ss_pred ch----hHHHHhhcCceEec
Q 044580 150 GE----PAAVMAEYGFKNVL 165 (269)
Q Consensus 150 ~~----~~~v~~~~Gf~~v~ 165 (269)
+. ....+.++|++.+.
T Consensus 320 ~~~~~~l~~~l~elGm~v~~ 339 (432)
T TIGR01285 320 PDLLAAWATFFTSMGAQIVA 339 (432)
T ss_pred HHHHHHHHHHHHHCCCEEEE
Confidence 53 24568899998754
No 291
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=45.93 E-value=1.6e+02 Score=26.81 Aligned_cols=82 Identities=13% Similarity=0.269 Sum_probs=49.9
Q ss_pred HHHHHHHHhhcCCCCceEEEEeCCC---CCCHHHHHHHHHHHcCCCCCCCcEEc---chHHHHH---HHHhcCCCeEEEE
Q 044580 77 NKALKRLYQHSGDLRIPYIFLTNGG---GFRESKRATELSKLLGVNILPCQVVQ---GHSPFKQ---LFNRFENEFIVAV 147 (269)
Q Consensus 77 ~eal~~L~~~~~~~gip~iflTN~~---~~se~~~a~~Ls~~lGi~i~~~qVi~---s~tp~~~---L~~~~~~k~Vlvv 147 (269)
.+|++..++ .+++.+++|.+. +.+|.+..++.-..+|++ ++.|+. |..+... ..+.++.+++.+|
T Consensus 71 ~~A~~LYk~----gk~~~ilvSGg~~~~~~~Ea~~M~~yLi~~GVp--~e~Ii~e~~s~nT~en~~~a~~i~~~~~~iIV 144 (239)
T PRK10834 71 QGAINAYNS----GKVNYLLLSGDNALQSYNEPMTMRKDLIAAGVD--PSDIVLDYAGFRTLDSIVRTRKVFDTNDFIII 144 (239)
T ss_pred HHHHHHHHh----CCCCEEEEeCCCCCCCCCHHHHHHHHHHHcCCC--HHHEEecCCCCCHHHHHHHHHHHhCCCCEEEE
Confidence 345554454 467889999863 357777766665678876 567776 3333332 3344555667666
Q ss_pred cCc-hh-H--HHHhhcCceEe
Q 044580 148 GKG-EP-A--AVMAEYGFKNV 164 (269)
Q Consensus 148 G~~-~~-~--~v~~~~Gf~~v 164 (269)
-+. .+ | .+++..|++.+
T Consensus 145 Tq~fHm~RA~~ia~~~Gi~~~ 165 (239)
T PRK10834 145 TQRFHCERALFIALHMGIQAQ 165 (239)
T ss_pred CCHHHHHHHHHHHHHcCCceE
Confidence 553 22 3 45799998753
No 292
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=45.74 E-value=24 Score=33.77 Aligned_cols=26 Identities=19% Similarity=0.051 Sum_probs=23.6
Q ss_pred cccchHHHHHHHHhhcCCCCceEEEEeCCC
Q 044580 72 PIGGSNKALKRLYQHSGDLRIPYIFLTNGG 101 (269)
Q Consensus 72 ~iPgA~eal~~L~~~~~~~gip~iflTN~~ 101 (269)
+.||+.++|+.|++ .|+++.++||+.
T Consensus 185 ~~pgl~elL~~Lr~----~G~klfLvTNS~ 210 (343)
T TIGR02244 185 RDPKLPLFLSKLKE----HGKKLFLLTNSD 210 (343)
T ss_pred cchhHHHHHHHHHH----CCCeEEEEeCCC
Confidence 57999999999998 499999999975
No 293
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=45.48 E-value=30 Score=29.87 Aligned_cols=68 Identities=10% Similarity=0.129 Sum_probs=36.2
Q ss_pred cCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCC-CCCCcEEcchHHHHHHHHhcC
Q 044580 62 IDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVN-ILPCQVVQGHSPFKQLFNRFE 140 (269)
Q Consensus 62 IDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~-i~~~qVi~s~tp~~~L~~~~~ 140 (269)
+||+++.+... ..+.++.|.. .++|++++-+... ..++. +..++.-.++..+++|.++ +
T Consensus 56 vdgiii~~~~~---~~~~~~~l~~----~~ipvV~~~~~~~------------~~~~~~v~~d~~~~~~~~~~~l~~~-g 115 (268)
T cd06298 56 VDGIIFMGGKI---SEEHREEFKR----SPTPVVLAGSVDE------------DNELPSVNIDYKKAAFEATELLIKN-G 115 (268)
T ss_pred CCEEEEeCCCC---cHHHHHHHhc----CCCCEEEEccccC------------CCCCCEEEECcHHHHHHHHHHHHHc-C
Confidence 56666544321 2356676765 4899999965321 01111 2222322345677777664 4
Q ss_pred CCeEEEEcC
Q 044580 141 NEFIVAVGK 149 (269)
Q Consensus 141 ~k~VlvvG~ 149 (269)
.++|.++++
T Consensus 116 ~~~i~~l~~ 124 (268)
T cd06298 116 HKKIAFISG 124 (268)
T ss_pred CceEEEEeC
Confidence 566777753
No 294
>PRK03972 ribosomal biogenesis protein; Validated
Probab=45.41 E-value=60 Score=29.04 Aligned_cols=56 Identities=13% Similarity=0.293 Sum_probs=37.2
Q ss_pred CceEEEEeCCCCCC-HHHHHHHHHHHcCCCCCCCcEEcchHHHHHHHHhcCCCeEEEEcCc
Q 044580 91 RIPYIFLTNGGGFR-ESKRATELSKLLGVNILPCQVVQGHSPFKQLFNRFENEFIVAVGKG 150 (269)
Q Consensus 91 gip~iflTN~~~~s-e~~~a~~Ls~~lGi~i~~~qVi~s~tp~~~L~~~~~~k~VlvvG~~ 150 (269)
..|.++.||-.... ..++|+.+++.+|++.-+ -.+..+..|..++...-|+|||..
T Consensus 104 ~~p~iItts~kt~~g~~~~Ak~lA~eLgi~yV~----R~k~Sl~~L~~~~~~d~vLVV~~~ 160 (208)
T PRK03972 104 DMPLVITTAKRVGLDHMAFAQVFAELTGGKFVP----RGGKSLQDIADKYNTDVLGVIERH 160 (208)
T ss_pred cccEEEEcCCCCCHHHHHHHHHHHHHhCCceeC----cCCcCHHHHHhhhcCceEEEEecC
Confidence 68887777666555 348899999999987422 133445556555656678888754
No 295
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=45.27 E-value=83 Score=29.36 Aligned_cols=59 Identities=19% Similarity=0.218 Sum_probs=42.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHcCCC----CCCCcEEcch-HHHHHHHHhcC--CCeEEEEcCchhH
Q 044580 95 IFLTNGGGFRESKRATELSKLLGVN----ILPCQVVQGH-SPFKQLFNRFE--NEFIVAVGKGEPA 153 (269)
Q Consensus 95 iflTN~~~~se~~~a~~Ls~~lGi~----i~~~qVi~s~-tp~~~L~~~~~--~k~VlvvG~~~~~ 153 (269)
++..+....++++.+++|+++.|.- -+.-.|+.++ |.+..|.++.+ +..++-+|++++.
T Consensus 122 ii~~e~~~~sRE~va~~ltee~g~~~i~Py~~p~vIaGqgTiA~ElleqVg~iDalfvpvgGGGll 187 (323)
T KOG1251|consen 122 IIFCEPTVESRESVAKDLTEETGYYLIHPYNHPSVIAGQGTIALELLEQVGEIDALFVPVGGGGLL 187 (323)
T ss_pred EEEecCccchHHHHHHHHHHhcCcEEeCCCCCcceeeccchHHHHHHHhhCccceEEEeecCcchh
Confidence 3445777789999999999999974 2334677765 77888888765 4456667887764
No 296
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=45.22 E-value=92 Score=27.67 Aligned_cols=110 Identities=22% Similarity=0.214 Sum_probs=57.7
Q ss_pred CCccEEEEecCceee-------cCCc-cccchHHHHH------HHHhh---------------c--CCCCceEEEEeCCC
Q 044580 53 RPSFGIAFDIDGVVL-------LGNT-PIGGSNKALK------RLYQH---------------S--GDLRIPYIFLTNGG 101 (269)
Q Consensus 53 ~~~~a~lFDIDGVL~-------~G~~-~iPgA~eal~------~L~~~---------------~--~~~gip~iflTN~~ 101 (269)
++..++-||||.|++ +|.+ .-||..+.|+ ++.+. + .+.|=.++|+|..+
T Consensus 61 ~~Pi~VsFDIDDTvLFsSp~F~~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~SIPKevA~qLI~MHq~RGD~i~FvTGRt 140 (237)
T COG3700 61 RPPIAVSFDIDDTVLFSSPGFWRGKKYFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIYFVTGRT 140 (237)
T ss_pred CCCeeEeeccCCeeEecccccccCccccCCChHHhhcCHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 456789999999986 4544 3466554432 11110 0 13577889999876
Q ss_pred CCCHHHHHHHHHHHcCCCCCCCcEEc-chH--HHHHHHHh---cCCCeEEEEcCchhHHHHhhcCceE
Q 044580 102 GFRESKRATELSKLLGVNILPCQVVQ-GHS--PFKQLFNR---FENEFIVAVGKGEPAAVMAEYGFKN 163 (269)
Q Consensus 102 ~~se~~~a~~Ls~~lGi~i~~~qVi~-s~t--p~~~L~~~---~~~k~VlvvG~~~~~~v~~~~Gf~~ 163 (269)
.-..+..++-|.+.+.+. ...-|+- +.. |.++-+.. -++-++..--+++....++++|.+-
T Consensus 141 ~gk~d~vsk~Lak~F~i~-~m~pv~f~Gdk~k~~qy~Kt~~i~~~~~~IhYGDSD~Di~AAkeaG~Rg 207 (237)
T COG3700 141 PGKTDTVSKTLAKNFHIT-NMNPVIFAGDKPKPGQYTKTQWIQDKNIRIHYGDSDNDITAAKEAGARG 207 (237)
T ss_pred CCcccccchhHHhhcccC-CCcceeeccCCCCcccccccHHHHhcCceEEecCCchhhhHHHhcCccc
Confidence 444445666676555552 1233332 221 22221111 1233555433455566788888554
No 297
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=44.92 E-value=1.1e+02 Score=27.90 Aligned_cols=12 Identities=25% Similarity=0.216 Sum_probs=9.2
Q ss_pred CCccEEEEecCC
Q 044580 208 QRVQAAFIVSDS 219 (269)
Q Consensus 208 ~~i~AI~v~~Dp 219 (269)
.+++|||..+|.
T Consensus 236 ~~~~ai~~~nD~ 247 (343)
T PRK10727 236 RNFTAVACYNDS 247 (343)
T ss_pred CCCCEEEEcCcH
Confidence 357899988886
No 298
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=43.77 E-value=2.1e+02 Score=25.99 Aligned_cols=86 Identities=19% Similarity=0.190 Sum_probs=55.5
Q ss_pred ccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcchHHHHHHHHhcCCCeEEEEcCc
Q 044580 71 TPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGHSPFKQLFNRFENEFIVAVGKG 150 (269)
Q Consensus 71 ~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~tp~~~L~~~~~~k~VlvvG~~ 150 (269)
.+-+--..+.+.|.+ .|..|+++.-| |.+.+++.+.+..++++= +| .-...+.+ +..+-++|.++|+.
T Consensus 59 ~~~~~L~~~a~~Le~----~GAd~i~l~~N---T~H~~~d~iq~~~~iPll--hI--idaTa~~i-k~~g~kkvgLLgT~ 126 (230)
T COG1794 59 EAGEILIDAAKKLER----AGADFIVLPTN---TMHKVADDIQKAVGIPLL--HI--IDATAKAI-KAAGAKKVGLLGTR 126 (230)
T ss_pred cHHHHHHHHHHHHHh----cCCCEEEEeCC---cHHHHHHHHHHhcCCCee--hH--HHHHHHHH-HhcCCceeEEeecc
Confidence 343444556677777 58888666655 477889999777788741 11 12444444 33467899999984
Q ss_pred h-----h-HHHHhhcCceEecCccc
Q 044580 151 E-----P-AAVMAEYGFKNVLSIDE 169 (269)
Q Consensus 151 ~-----~-~~v~~~~Gf~~v~t~~d 169 (269)
. + ++.+++.|++.++ |+|
T Consensus 127 ~Tm~~~fY~~~l~~~gievvv-Pdd 150 (230)
T COG1794 127 FTMEQGFYRKRLEEKGIEVVV-PDD 150 (230)
T ss_pred chHHhHHHHHHHHHCCceEec-CCH
Confidence 2 2 4679999987665 443
No 299
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=43.46 E-value=34 Score=29.75 Aligned_cols=75 Identities=9% Similarity=0.177 Sum_probs=39.8
Q ss_pred ecCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcchHHHHHHHHhcC
Q 044580 61 DIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGHSPFKQLFNRFE 140 (269)
Q Consensus 61 DIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~tp~~~L~~~~~ 140 (269)
.+||+++.+... +...+.++.+.+ .++|++++.+..... -..+. .+..++.-.+...+++|.++.+
T Consensus 56 ~vdgiii~~~~~-~~~~~~~~~l~~----~~iPvv~~~~~~~~~----~~~~~-----~V~~d~~~~g~~~~~~l~~~~~ 121 (272)
T cd06301 56 GVDAIIVVPVDT-AATAPIVKAANA----AGIPLVYVNRRPENA----PKGVA-----YVGSDEVVAGRLQAEYVADKLG 121 (272)
T ss_pred CCCEEEEecCch-hhhHHHHHHHHH----CCCeEEEecCCCCCC----CCeeE-----EEecChHHHHHHHHHHHHHHhC
Confidence 468888765431 233566777776 499999986642110 00110 1222222224466777877633
Q ss_pred -CCeEEEEcC
Q 044580 141 -NEFIVAVGK 149 (269)
Q Consensus 141 -~k~VlvvG~ 149 (269)
.+++.++++
T Consensus 122 ~~~~i~~i~~ 131 (272)
T cd06301 122 GKGNVAILMG 131 (272)
T ss_pred CCccEEEEEC
Confidence 346666643
No 300
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=43.44 E-value=54 Score=32.37 Aligned_cols=85 Identities=15% Similarity=0.172 Sum_probs=51.1
Q ss_pred hHHHHHHHHhhcCCCCceEEEEeCC-CCCCHHHHHHHHHHHcCCCCCCCcEEcc-h----HHHHHHHHhcCCCeEEEEcC
Q 044580 76 SNKALKRLYQHSGDLRIPYIFLTNG-GGFRESKRATELSKLLGVNILPCQVVQG-H----SPFKQLFNRFENEFIVAVGK 149 (269)
Q Consensus 76 A~eal~~L~~~~~~~gip~iflTN~-~~~se~~~a~~Ls~~lGi~i~~~qVi~s-~----tp~~~L~~~~~~k~VlvvG~ 149 (269)
+..+-+.|.++ .|+|++.+..- |-..-.+..+.|.+.+|.+++ +.+.. . ..+........+|+|.+.|+
T Consensus 245 ~~~~a~~Lee~---~GiP~~~~~~p~G~~~t~~~l~~l~~~~g~~~~--~~i~~er~~~~~~~~d~~~~l~gkrvai~~~ 319 (455)
T PRK14476 245 MRKAAEALEAR---TGVPYLVFPSLTGLEAVDRFIATLAQISGRPVP--AKYRRQRAQLQDAMLDGHFYFGGKRVAIAAE 319 (455)
T ss_pred HHHHHHHHHHH---hCCCeEecCCCcChHHHHHHHHHHHHHHCCCCc--HHHHHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 44666777764 79998866332 333445667777777887653 22211 1 22222233456889988886
Q ss_pred ch----hHHHHhhcCceEec
Q 044580 150 GE----PAAVMAEYGFKNVL 165 (269)
Q Consensus 150 ~~----~~~v~~~~Gf~~v~ 165 (269)
+. ....+.++|++.+.
T Consensus 320 ~~~~~~la~~L~elG~~v~~ 339 (455)
T PRK14476 320 PDLLLALGSFLAEMGAEIVA 339 (455)
T ss_pred HHHHHHHHHHHHHCCCEEEE
Confidence 53 24568899998864
No 301
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=43.28 E-value=39 Score=28.84 Aligned_cols=35 Identities=20% Similarity=0.345 Sum_probs=23.2
Q ss_pred ecCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCC
Q 044580 61 DIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNG 100 (269)
Q Consensus 61 DIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~ 100 (269)
.+||+++.+.. .+...+.++.++. .++|++++.+.
T Consensus 55 ~vdgvi~~~~~-~~~~~~~~~~l~~----~~ip~V~~~~~ 89 (267)
T cd01536 55 GVDGIIISPVD-SAALTPALKKANA----AGIPVVTVDSD 89 (267)
T ss_pred CCCEEEEeCCC-chhHHHHHHHHHH----CCCcEEEecCC
Confidence 57888776532 2333456777776 48999998764
No 302
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=43.10 E-value=48 Score=32.10 Aligned_cols=83 Identities=10% Similarity=0.068 Sum_probs=51.8
Q ss_pred HHHHHHHhhcCCCCceEEEEeC-CCCCCHHHHHHHHHHHcCCCCCCCcEEc-ch---HHHHHHHHhcCCCeEEEEcCchh
Q 044580 78 KALKRLYQHSGDLRIPYIFLTN-GGGFRESKRATELSKLLGVNILPCQVVQ-GH---SPFKQLFNRFENEFIVAVGKGEP 152 (269)
Q Consensus 78 eal~~L~~~~~~~gip~iflTN-~~~~se~~~a~~Ls~~lGi~i~~~qVi~-s~---tp~~~L~~~~~~k~VlvvG~~~~ 152 (269)
.+-+.|.++ .|+|++-+.- -|-.......+.|++.+|.+. +.+.. .. ..+........+|+|.+.|++..
T Consensus 211 ~~A~~Le~~---~GiP~~~~~~PiGi~~T~~~l~~la~~~g~~~--~~~~~e~~~~~~~l~~~~~~l~Gkrv~i~gd~~~ 285 (407)
T TIGR01279 211 DTATTLRRE---RGAKVLSAPFPFGPDGTRRFLEAIAAEFGIEV--DKLSEREAQAWRALEPHTQLLRGKKIFFFGDNLL 285 (407)
T ss_pred HHHHHHHHH---hCCccccCCCCcCHHHHHHHHHHHHHHhCcCH--HHHHHHHHHHHHHHHHHHHhcCCCEEEEECCchH
Confidence 456677664 7999877654 344455667777877788762 22211 11 22222334467899999888643
Q ss_pred ----HHHHhhcCceEec
Q 044580 153 ----AAVMAEYGFKNVL 165 (269)
Q Consensus 153 ----~~v~~~~Gf~~v~ 165 (269)
...+.+.|++.+.
T Consensus 286 ~~~l~~~L~elGm~~v~ 302 (407)
T TIGR01279 286 ELPLARFLKRCGMEVVE 302 (407)
T ss_pred HHHHHHHHHHCCCEEEE
Confidence 4567889998864
No 303
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=42.80 E-value=1.2e+02 Score=27.51 Aligned_cols=25 Identities=20% Similarity=0.058 Sum_probs=15.6
Q ss_pred CCccEEEEecCCccchhhHHHHHHHHHhCC
Q 044580 208 QRVQAAFIVSDSVDWSRDIQVLCDILRTGG 237 (269)
Q Consensus 208 ~~i~AI~v~~Dp~dW~~diQii~DlL~s~G 237 (269)
+.++|||..+|.. ..-++..|...|
T Consensus 238 ~~~~ai~~~nd~~-----a~g~~~al~~~g 262 (341)
T PRK10703 238 HRPTAVFCGGDIM-----AMGAICAADEMG 262 (341)
T ss_pred CCCCEEEECCcHH-----HHHHHHHHHHcC
Confidence 4688999888753 123556666634
No 304
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=42.72 E-value=75 Score=28.94 Aligned_cols=95 Identities=17% Similarity=0.108 Sum_probs=58.7
Q ss_pred EEecCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcch---------
Q 044580 59 AFDIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGH--------- 129 (269)
Q Consensus 59 lFDIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~--------- 129 (269)
.||--| --....+.++.++++.|+++ |.-+.++||.-.+.+ .+...+|+.---|.|+.|.
T Consensus 103 ~~s~~~--~~~~~~~~~~~~~lq~lR~~----g~~l~iisN~d~r~~-----~~l~~~~l~~~fD~vv~S~e~g~~KPDp 171 (237)
T KOG3085|consen 103 LFSTFA--PSAWKYLDGMQELLQKLRKK----GTILGIISNFDDRLR-----LLLLPLGLSAYFDFVVESCEVGLEKPDP 171 (237)
T ss_pred eecccc--ccCceeccHHHHHHHHHHhC----CeEEEEecCCcHHHH-----HHhhccCHHHhhhhhhhhhhhccCCCCh
Confidence 444444 23446788899999999994 877777777653322 3334667653345666653
Q ss_pred HHHHHHHHhcC--CCeEEEEcCchh--HHHHhhcCceEe
Q 044580 130 SPFKQLFNRFE--NEFIVAVGKGEP--AAVMAEYGFKNV 164 (269)
Q Consensus 130 tp~~~L~~~~~--~k~VlvvG~~~~--~~v~~~~Gf~~v 164 (269)
..+.+..++.+ ..-|+.+|+... .+-|+..|.+..
T Consensus 172 ~If~~al~~l~v~Pee~vhIgD~l~nD~~gA~~~G~~ai 210 (237)
T KOG3085|consen 172 RIFQLALERLGVKPEECVHIGDLLENDYEGARNLGWHAI 210 (237)
T ss_pred HHHHHHHHHhCCChHHeEEecCccccccHhHHHcCCEEE
Confidence 33444444433 335788898643 466999998764
No 305
>TIGR02260 benz_CoA_red_B benzoyl-CoA reductase, bcr type, subunit B. This model describes B, or beta, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA.
Probab=42.68 E-value=48 Score=32.44 Aligned_cols=50 Identities=12% Similarity=0.213 Sum_probs=27.5
Q ss_pred EecCceeecCCc---cccc-hHHHHHHHHhhcCCCCceEEEE-eCCCCC---CHHHHHHHH
Q 044580 60 FDIDGVVLLGNT---PIGG-SNKALKRLYQHSGDLRIPYIFL-TNGGGF---RESKRATEL 112 (269)
Q Consensus 60 FDIDGVL~~G~~---~iPg-A~eal~~L~~~~~~~gip~ifl-TN~~~~---se~~~a~~L 112 (269)
+++|||++.... +..+ .....+.+.++ .|+|++.+ |.-+.. ++++..-++
T Consensus 349 ~~aDGVI~~~~~~C~~~~~e~~~~~~~l~e~---~GIP~L~iE~D~~d~r~~d~gQ~~TRi 406 (413)
T TIGR02260 349 YEADGLLINSIKSCNSFSAGQLLMMREIEKR---TGKPAAFIETDLVDPRYFSAANVKNRL 406 (413)
T ss_pred hCCCEEEEeccCCCCcchhhhHHHHHHHHHH---cCCCEEEEEcCCCCcccCCHHHHHHHH
Confidence 457787776654 3333 33344555542 47887777 544433 445555444
No 306
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=42.42 E-value=83 Score=27.68 Aligned_cols=89 Identities=11% Similarity=0.100 Sum_probs=44.1
Q ss_pred cCceeecCCccccchHHHHHHHHhh-cCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCC-CCCcEEcchHHHHHHHHhc
Q 044580 62 IDGVVLLGNTPIGGSNKALKRLYQH-SGDLRIPYIFLTNGGGFRESKRATELSKLLGVNI-LPCQVVQGHSPFKQLFNRF 139 (269)
Q Consensus 62 IDGVL~~G~~~iPgA~eal~~L~~~-~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i-~~~qVi~s~tp~~~L~~~~ 139 (269)
.|+++... +.|++++...... ....+++++.+-.. -++.| +.+|+.. -+.. .++...+..+..+.
T Consensus 49 ~d~iifTS----~naV~~~~~~~~~~~~~~~~~~~aVG~~-------Ta~~l-~~~G~~~~~~~~-~~~e~L~~~~~~~~ 115 (240)
T PRK09189 49 HGAIAVTS----AEAVRHLAALGERLLPHLALPLFAVGEA-------TAEAA-RELGFRHVIEGG-GDGVRLAETVAAAL 115 (240)
T ss_pred cCEEEEEC----HHHHHHHHhcchhhHHhcCCeEEEEcHH-------HHHHH-HHcCCCCCcCCC-CCHHHHHHHHHHhc
Confidence 36666655 4455554321110 00125676665432 24556 4788861 1111 12233444444443
Q ss_pred -CCCeEEEEcCc----hhHHHHhhcCceE
Q 044580 140 -ENEFIVAVGKG----EPAAVMAEYGFKN 163 (269)
Q Consensus 140 -~~k~VlvvG~~----~~~~v~~~~Gf~~ 163 (269)
.+++|+++.+. .+.+.+++.|+..
T Consensus 116 ~~~~~vL~~rg~~~r~~l~~~L~~~G~~v 144 (240)
T PRK09189 116 APTARLLYLAGRPRAPVFEDRLAAAGIPF 144 (240)
T ss_pred CCCCcEEEeccCcccchhHHHHHhCCCee
Confidence 56677776443 3456788999775
No 307
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=42.14 E-value=56 Score=32.82 Aligned_cols=86 Identities=17% Similarity=0.237 Sum_probs=50.2
Q ss_pred HHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCC-CcEEcchHH-------HHHHH--HhcCCCeEEE
Q 044580 77 NKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILP-CQVVQGHSP-------FKQLF--NRFENEFIVA 146 (269)
Q Consensus 77 ~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~-~qVi~s~tp-------~~~L~--~~~~~k~Vlv 146 (269)
..+-+.|+++ .|+|++..+=-|-.......+.|.+.+|++... +.++..... +..+. ..+.+|+|++
T Consensus 222 ~~~A~~Lee~---fGiP~i~~~PiG~~~T~~fL~~la~~~g~~~~~~e~~i~~~~~~~~~l~~~~~~~d~~~l~Gkrv~I 298 (519)
T PRK02910 222 ESAARYLERE---FGQPYVKTVPIGVGATARFIREVAELLNLDGADLEAFILDGLSAPSRLPWFSRSVDSTYLTGKRVFV 298 (519)
T ss_pred HHHHHHHHHH---hCCcccccccccHHHHHHHHHHHHHHhCCChhhhHHHHHHHHhhhhhhhHHHHhhhhHhhcCCEEEE
Confidence 3445666664 899997543223344556677787778876542 233332111 11111 3457899999
Q ss_pred EcCch----hHHHHh-hcCceEec
Q 044580 147 VGKGE----PAAVMA-EYGFKNVL 165 (269)
Q Consensus 147 vG~~~----~~~v~~-~~Gf~~v~ 165 (269)
.|+.. ....+. +.|++.+.
T Consensus 299 ~gd~~~a~~l~~~L~~ElGm~vv~ 322 (519)
T PRK02910 299 FGDATHAVAAARILSDELGFEVVG 322 (519)
T ss_pred EcCcHHHHHHHHHHHHhcCCeEEE
Confidence 99763 345565 89999864
No 308
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=42.01 E-value=38 Score=28.73 Aligned_cols=87 Identities=16% Similarity=0.146 Sum_probs=45.4
Q ss_pred cchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcchHHHHHHHHhc-CCCeEEEEcCchh
Q 044580 74 GGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGHSPFKQLFNRF-ENEFIVAVGKGEP 152 (269)
Q Consensus 74 PgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~tp~~~L~~~~-~~k~VlvvG~~~~ 152 (269)
+.+.+.++.|... .+.+.++.+++...-... +..+.+.+|+++.. ..+.+..-+....++. ....=.++|+...
T Consensus 61 ~s~~Dil~al~~a-~~~~~~Iavv~~~~~~~~---~~~~~~ll~~~i~~-~~~~~~~e~~~~i~~~~~~G~~viVGg~~~ 135 (176)
T PF06506_consen 61 ISGFDILRALAKA-KKYGPKIAVVGYPNIIPG---LESIEELLGVDIKI-YPYDSEEEIEAAIKQAKAEGVDVIVGGGVV 135 (176)
T ss_dssp --HHHHHHHHHHC-CCCTSEEEEEEESS-SCC---HHHHHHHHT-EEEE-EEESSHHHHHHHHHHHHHTT--EEEESHHH
T ss_pred CCHhHHHHHHHHH-HhcCCcEEEEecccccHH---HHHHHHHhCCceEE-EEECCHHHHHHHHHHHHHcCCcEEECCHHH
Confidence 3444555555542 135677877776655543 33444557876632 1222332233222222 2223456788888
Q ss_pred HHHHhhcCceEec
Q 044580 153 AAVMAEYGFKNVL 165 (269)
Q Consensus 153 ~~v~~~~Gf~~v~ 165 (269)
.+.++.+|+..+.
T Consensus 136 ~~~A~~~gl~~v~ 148 (176)
T PF06506_consen 136 CRLARKLGLPGVL 148 (176)
T ss_dssp HHHHHHTTSEEEE
T ss_pred HHHHHHcCCcEEE
Confidence 8999999999864
No 309
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=41.67 E-value=52 Score=25.82 Aligned_cols=24 Identities=8% Similarity=0.339 Sum_probs=18.3
Q ss_pred HHHHHHHHhcCCCeEEEEcCchhH
Q 044580 130 SPFKQLFNRFENEFIVAVGKGEPA 153 (269)
Q Consensus 130 tp~~~L~~~~~~k~VlvvG~~~~~ 153 (269)
+.++.+.+.|++++.++||+.+..
T Consensus 53 ~~i~~i~~~fP~~kfiLIGDsgq~ 76 (100)
T PF09949_consen 53 DNIERILRDFPERKFILIGDSGQH 76 (100)
T ss_pred HHHHHHHHHCCCCcEEEEeeCCCc
Confidence 456667788999998899987653
No 310
>PRK10200 putative racemase; Provisional
Probab=40.60 E-value=2.5e+02 Score=24.93 Aligned_cols=86 Identities=9% Similarity=0.061 Sum_probs=56.5
Q ss_pred CCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcchHHHHHHHHhcCCCeEEEEc
Q 044580 69 GNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGHSPFKQLFNRFENEFIVAVG 148 (269)
Q Consensus 69 G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~tp~~~L~~~~~~k~VlvvG 148 (269)
+..|.|-=.+.++.|.+ .|..++.+.-|+ .+...+.+.+..++++= +++. .....+ +..+.++|-++|
T Consensus 57 ~~~~~~~l~~~~~~L~~----~g~~~iviaCNT---ah~~~~~l~~~~~iPii--~ii~--~~~~~~-~~~~~~~VglLa 124 (230)
T PRK10200 57 WDKTGDILAEAALGLQR----AGAEGIVLCTNT---MHKVADAIESRCSLPFL--HIAD--ATGRAI-TGAGMTRVALLG 124 (230)
T ss_pred cchHHHHHHHHHHHHHH----cCCCEEEECCch---HHHHHHHHHHhCCCCEe--ehHH--HHHHHH-HHcCCCeEEEec
Confidence 34688888899999998 599998888774 55567888766666531 1211 222233 334678999999
Q ss_pred Cchh------HHHHh-hcCceEecC
Q 044580 149 KGEP------AAVMA-EYGFKNVLS 166 (269)
Q Consensus 149 ~~~~------~~v~~-~~Gf~~v~t 166 (269)
+.+. .+.++ .+|++.++.
T Consensus 125 T~~Ti~s~~Y~~~l~~~~g~~~~~p 149 (230)
T PRK10200 125 TRYTMEQDFYRGRLTEQFSINCLIP 149 (230)
T ss_pred cHHHHHHhHHHHHHHHhcCCeEeCC
Confidence 9653 23455 459887643
No 311
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=39.89 E-value=58 Score=29.61 Aligned_cols=39 Identities=33% Similarity=0.372 Sum_probs=31.7
Q ss_pred HHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCC
Q 044580 78 KALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNIL 121 (269)
Q Consensus 78 eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~ 121 (269)
+.++.|.+ .|+|++-||-.+...+....+.| +.+|+.++
T Consensus 88 ~~i~~lq~----~~~~v~alT~~~~~~~~~t~~~L-k~~gi~fs 126 (252)
T PF11019_consen 88 NIINSLQN----KGIPVIALTARGPNMEDWTLREL-KSLGIDFS 126 (252)
T ss_pred HHHHHHHH----CCCcEEEEcCCChhhHHHHHHHH-HHCCCCcc
Confidence 33444444 69999999999999999999999 58999765
No 312
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=39.74 E-value=26 Score=31.00 Aligned_cols=53 Identities=21% Similarity=0.210 Sum_probs=27.2
Q ss_pred EecCceeecCC------ccccchHHHHHHHHhhcCCCCceEEEEeCCCC-CCHHHHHHHHHHHcCCC
Q 044580 60 FDIDGVVLLGN------TPIGGSNKALKRLYQHSGDLRIPYIFLTNGGG-FRESKRATELSKLLGVN 119 (269)
Q Consensus 60 FDIDGVL~~G~------~~iPgA~eal~~L~~~~~~~gip~iflTN~~~-~se~~~a~~Ls~~lGi~ 119 (269)
+|.-|++++-. .|+|=+.+..+.|... -|+.+|+|||.-- +.. ++..+.+|.+
T Consensus 21 ~dfng~~~~~p~GnilIDP~~ls~~~~~~l~a~---ggv~~IvLTn~dHvR~A----~~ya~~~~a~ 80 (199)
T PF14597_consen 21 LDFNGHAWRRPEGNILIDPPPLSAHDWKHLDAL---GGVAWIVLTNRDHVRAA----EDYAEQTGAK 80 (199)
T ss_dssp EEEEEEEE--TT--EEES-----HHHHHHHHHT---T--SEEE-SSGGG-TTH----HHHHHHS--E
T ss_pred cCceeEEEEcCCCCEEecCccccHHHHHHHHhc---CCceEEEEeCChhHhHH----HHHHHHhCCe
Confidence 45566666422 4788999999999984 5899999999753 333 3344556654
No 313
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=39.54 E-value=1.9e+02 Score=23.11 Aligned_cols=51 Identities=10% Similarity=0.005 Sum_probs=38.1
Q ss_pred eeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCC-HHHHHHHHHHHcCCC
Q 044580 65 VVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFR-ESKRATELSKLLGVN 119 (269)
Q Consensus 65 VL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~s-e~~~a~~Ls~~lGi~ 119 (269)
.-.+++...-|..++++.|+.. ...++++.++.+.. -......+.+..+++
T Consensus 20 la~ragkl~~G~~~v~kaikkg----ka~LVilA~D~s~~~~~~~i~~lc~~~~Ip 71 (117)
T TIGR03677 20 KARETGKIKKGTNEVTKAVERG----IAKLVVIAEDVEPPEIVAHLPALCEEKGIP 71 (117)
T ss_pred HHHHcCCEeEcHHHHHHHHHcC----CccEEEEeCCCCcHHHHHHHHHHHHHcCCC
Confidence 3456677889999999999973 78999999997553 245566666677776
No 314
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=39.50 E-value=19 Score=31.44 Aligned_cols=29 Identities=24% Similarity=0.188 Sum_probs=23.6
Q ss_pred EEEEecCceeecCCccccchHHHHHHHHh
Q 044580 57 GIAFDIDGVVLLGNTPIGGSNKALKRLYQ 85 (269)
Q Consensus 57 a~lFDIDGVL~~G~~~iPgA~eal~~L~~ 85 (269)
-+.+||||||.....-+|--..+++.-..
T Consensus 8 ~~ciDIDGtit~~~t~~~~~n~~f~ksls 36 (194)
T COG5663 8 RCCIDIDGTITDDPTFAPYLNPAFEKSLS 36 (194)
T ss_pred heeeccCCceecCcccchhccHHHHhhhh
Confidence 47899999999999888877777766554
No 315
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=39.49 E-value=1.9e+02 Score=23.32 Aligned_cols=53 Identities=9% Similarity=-0.022 Sum_probs=39.2
Q ss_pred ceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCH-HHHHHHHHHHcCCCC
Q 044580 64 GVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRE-SKRATELSKLLGVNI 120 (269)
Q Consensus 64 GVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se-~~~a~~Ls~~lGi~i 120 (269)
|.-.+.+..+-|..++++.+++. ...++|+.++.+..+ ......+.+..|+++
T Consensus 23 ~la~ragklv~G~~~v~kaikkg----kakLVilA~D~s~~~i~~~~~~lc~~~~Vp~ 76 (122)
T PRK04175 23 EKARDTGKIKKGTNETTKAVERG----IAKLVVIAEDVDPEEIVAHLPLLCEEKKIPY 76 (122)
T ss_pred HHHHHcCCEeEcHHHHHHHHHcC----CccEEEEeCCCChHHHHHHHHHHHHHcCCCE
Confidence 33456678889999999999973 789999999875432 355666667777773
No 316
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=38.91 E-value=44 Score=25.67 Aligned_cols=65 Identities=15% Similarity=0.215 Sum_probs=45.9
Q ss_pred CCccEEEEecCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCC--CCCCcEEc
Q 044580 53 RPSFGIAFDIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVN--ILPCQVVQ 127 (269)
Q Consensus 53 ~~~~a~lFDIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~--i~~~qVi~ 127 (269)
.....+++|+.||=+-+...+..-.+..+.++. .|++++|+.- .....+.| +.+|+. +.+++++.
T Consensus 46 ~~~~~vIlD~s~v~~iDssgi~~L~~~~~~~~~----~g~~~~l~~~-----~~~v~~~l-~~~~~~~~~~~~~~~~ 112 (117)
T PF01740_consen 46 QTIKNVILDMSGVSFIDSSGIQALVDIIKELRR----RGVQLVLVGL-----NPDVRRIL-ERSGLIDFIPEDQIFP 112 (117)
T ss_dssp SSSSEEEEEETTESEESHHHHHHHHHHHHHHHH----TTCEEEEESH-----HHHHHHHH-HHTTGHHHSCGGEEES
T ss_pred ccceEEEEEEEeCCcCCHHHHHHHHHHHHHHHH----CCCEEEEEEC-----CHHHHHHH-HHcCCChhcCCCCccC
Confidence 357899999999988888777777777777776 4888777652 33555556 578874 44455554
No 317
>cd00540 AAG Alkyladenine DNA glycosylase (AAG), also known as 3-methyladenine DNA glycosylase, catalyzes the first step in base excision repair (BER) by cleaving damaged DNA bases within double-stranded DNA to produce an abasic site. AAG bends DNA by intercalating between the base pairs, causing the damaged base to flip out of the double helix and into the enzyme active site for cleavage. Although AAG represents one of six DNA glycosylase classes, it lacks the helix-hairpin-helix active site motif associated with the other BER glycosylases and is structurally quite distinct from them.
Probab=38.89 E-value=17 Score=31.73 Aligned_cols=44 Identities=25% Similarity=0.229 Sum_probs=30.7
Q ss_pred CceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCC
Q 044580 63 DGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNI 120 (269)
Q Consensus 63 DGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i 120 (269)
.|||+|+-+|+.|.....+ .+ .+.+..-||||+|+ |.+.||+..
T Consensus 88 ~aVLIRAiEp~~G~~~m~~-~R-----~~~~~~~L~nGPGk--------L~~AlgI~~ 131 (179)
T cd00540 88 AAVLIRALEPLEGLELMRE-RR-----GGKRKRDLTNGPGK--------LCQALGIDK 131 (179)
T ss_pred cEEEEEeeccccchhhHHh-cc-----CCCccCeeccChHH--------HHHHhCCcH
Confidence 5699999999999855432 22 24555779999754 567788864
No 318
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=38.67 E-value=82 Score=30.28 Aligned_cols=85 Identities=12% Similarity=0.165 Sum_probs=50.6
Q ss_pred hHHHHHHHHhhcCCCCceEEEEeC-CCCCCHHHHHHHHHHHcCCCCCCCcEEcch-----HHHHHHHHhcCCCeEEEEcC
Q 044580 76 SNKALKRLYQHSGDLRIPYIFLTN-GGGFRESKRATELSKLLGVNILPCQVVQGH-----SPFKQLFNRFENEFIVAVGK 149 (269)
Q Consensus 76 A~eal~~L~~~~~~~gip~iflTN-~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~-----tp~~~L~~~~~~k~VlvvG~ 149 (269)
+..+-+.|.++ .|+|++-+.- -|-....+..+.|.+.+|. .+ +.+... ..+........+|+|.+.|+
T Consensus 211 ~~~~A~~Le~r---~giP~~~~~~P~G~~~t~~~l~~la~~~g~--~~-~~i~~e~~~~~~~l~~~~~~l~Gkrv~i~g~ 284 (396)
T cd01979 211 LSRTATTLMRR---RKCKLLSAPFPIGPDGTRAWLEAICSAFGI--FP-SVLAEREARAWRALEPYLDLLRGKSIFFMGD 284 (396)
T ss_pred HHHHHHHHHHh---cCCCcccCCcCcChHHHHHHHHHHHHHhCC--Ch-hHHHHHHHHHHHHHHHHHHhhcCCEEEEECC
Confidence 34566667664 7898877654 3334455666677767773 22 233211 11222233457889998887
Q ss_pred ch----hHHHHhhcCceEecC
Q 044580 150 GE----PAAVMAEYGFKNVLS 166 (269)
Q Consensus 150 ~~----~~~v~~~~Gf~~v~t 166 (269)
+. ....+.+.|++.+..
T Consensus 285 ~~~~~~la~~L~elGm~vv~~ 305 (396)
T cd01979 285 NLLEIPLARFLTRCGMIVVEV 305 (396)
T ss_pred chHHHHHHHHHHHCCCEEEee
Confidence 54 345678899998753
No 319
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=38.25 E-value=93 Score=30.36 Aligned_cols=85 Identities=18% Similarity=0.196 Sum_probs=50.4
Q ss_pred hHHHHHHHHhhcCCCCceEEEEe-CCCCCCHHHHHHHHHHHcCCCCCCCcEEcc-h----HHHHHHHHhcCCCeEEEEcC
Q 044580 76 SNKALKRLYQHSGDLRIPYIFLT-NGGGFRESKRATELSKLLGVNILPCQVVQG-H----SPFKQLFNRFENEFIVAVGK 149 (269)
Q Consensus 76 A~eal~~L~~~~~~~gip~iflT-N~~~~se~~~a~~Ls~~lGi~i~~~qVi~s-~----tp~~~L~~~~~~k~VlvvG~ 149 (269)
+..+-+.|+++ .|+|++-+. =-|-.......+.+.+.+|.+++. .+.. . ..+........+|+|.+.|.
T Consensus 237 ~~~~a~~Le~~---~giP~~~~~~p~G~~~t~~~l~~l~~~~g~~~~~--~i~~er~~~~~~~~~~~~~l~gkrv~i~g~ 311 (435)
T cd01974 237 TEKTAKFLEKK---CKVPVETLNMPIGVAATDEFLMALSELTGKPIPE--ELEEERGRLVDAMTDSHQYLHGKKFALYGD 311 (435)
T ss_pred cHHHHHHHHHH---hCCCeeecCCCcChHHHHHHHHHHHHHhCCCCCH--HHHHHHHHHHHHHHHHHHhcCCCEEEEEcC
Confidence 34556666664 799987664 223334456666777777877531 2221 1 22222233457899998887
Q ss_pred ch----hHHHHhhcCceEec
Q 044580 150 GE----PAAVMAEYGFKNVL 165 (269)
Q Consensus 150 ~~----~~~v~~~~Gf~~v~ 165 (269)
.. ..+.+.++|++.+.
T Consensus 312 ~~~~~~la~~L~elGm~v~~ 331 (435)
T cd01974 312 PDFLIGLTSFLLELGMEPVH 331 (435)
T ss_pred hHHHHHHHHHHHHCCCEEEE
Confidence 53 23568899998853
No 320
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=38.16 E-value=70 Score=31.76 Aligned_cols=86 Identities=14% Similarity=0.157 Sum_probs=48.8
Q ss_pred HHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHc-CCCCCC------CcEEcc-h----HHHHHHHHhcCCCeE
Q 044580 77 NKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLL-GVNILP------CQVVQG-H----SPFKQLFNRFENEFI 144 (269)
Q Consensus 77 ~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~l-Gi~i~~------~qVi~s-~----tp~~~L~~~~~~k~V 144 (269)
..+-+.|+++ +|+||+..+=-|-..-....+.|.+.+ |..+++ ++++.. . ..+....+.+.+|+|
T Consensus 251 ~~~A~~L~er---fGiP~~~~~p~G~~~T~~~l~~la~~~~~~~~~~~~~~~~e~~i~~e~~~~~~~l~~~~~~l~Gk~v 327 (475)
T PRK14478 251 INLARKMEER---YGIPFFEGSFYGIEDTSDSLRQIARLLVERGADAELVERTEALIAEEEAKAWAALEPYRPRLEGKRV 327 (475)
T ss_pred HHHHHHHHHH---hCCCEEecCCCcHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Confidence 4567777774 899997533122233345566666666 222322 123321 1 223334455688999
Q ss_pred EEEcCch----hHHHHhhcCceEec
Q 044580 145 VAVGKGE----PAAVMAEYGFKNVL 165 (269)
Q Consensus 145 lvvG~~~----~~~v~~~~Gf~~v~ 165 (269)
.+.|.+. +...+.++|++.+.
T Consensus 328 aI~~~~~~~~~la~~l~ElGm~v~~ 352 (475)
T PRK14478 328 LLYTGGVKSWSVVKALQELGMEVVG 352 (475)
T ss_pred EEEcCCchHHHHHHHHHHCCCEEEE
Confidence 8876652 34568899998864
No 321
>PRK09526 lacI lac repressor; Reviewed
Probab=38.00 E-value=1.2e+02 Score=27.54 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=15.5
Q ss_pred CCccEEEEecCCccchhhHHHHHHHHHhCC
Q 044580 208 QRVQAAFIVSDSVDWSRDIQVLCDILRTGG 237 (269)
Q Consensus 208 ~~i~AI~v~~Dp~dW~~diQii~DlL~s~G 237 (269)
.+++|||..+|..-. -++..|...|
T Consensus 239 ~~~~ai~~~~d~~A~-----g~~~al~~~g 263 (342)
T PRK09526 239 PVPSAILVANDQMAL-----GVLRALHESG 263 (342)
T ss_pred CCCcEEEEcCcHHHH-----HHHHHHHHcC
Confidence 357899988875322 2556666644
No 322
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=37.84 E-value=83 Score=26.46 Aligned_cols=48 Identities=33% Similarity=0.475 Sum_probs=33.9
Q ss_pred cCceeecCCccc--cchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcC
Q 044580 62 IDGVVLLGNTPI--GGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLG 117 (269)
Q Consensus 62 IDGVL~~G~~~i--PgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lG 117 (269)
+.+|.+-|++|+ |...+.++.+++ .|+.+.+.||+. .+ +.++++. ..|
T Consensus 63 ~~~i~~sGGEPll~~~l~~li~~~~~----~g~~v~i~TNg~--~~-~~l~~l~-~~g 112 (191)
T TIGR02495 63 IDGVVITGGEPTLQAGLPDFLRKVRE----LGFEVKLDTNGS--NP-RVLEELL-EEG 112 (191)
T ss_pred CCeEEEECCcccCcHhHHHHHHHHHH----CCCeEEEEeCCC--CH-HHHHHHH-hcC
Confidence 456777788887 456677888877 488899999986 33 4555663 445
No 323
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=37.55 E-value=73 Score=28.97 Aligned_cols=78 Identities=17% Similarity=0.194 Sum_probs=38.2
Q ss_pred cchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcchHHHHHHHHhcCCC--eEEEEcCch
Q 044580 74 GGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGHSPFKQLFNRFENE--FIVAVGKGE 151 (269)
Q Consensus 74 PgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~tp~~~L~~~~~~k--~VlvvG~~~ 151 (269)
+....++++..+ .|||++.+-+..... ..... ..| .++.-.+....+++.+..+++ .+.+.|..+
T Consensus 103 ~~~~~~v~~a~~----aGIpVv~~d~~~~~~----~~~~~-~vg----~dn~~~G~~~a~~l~~~~~~~g~v~~~~g~~~ 169 (322)
T COG1879 103 DALTPAVKKAKA----AGIPVVTVDSDIPGP----GDRVA-YVG----SDNYKAGRLAAEYLAKALGGKGKVVVLVGSPG 169 (322)
T ss_pred hhhHHHHHHHHH----CCCcEEEEecCCCCC----CceeE-EEe----cCcHHHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 445556666666 377777776653222 00000 111 123322346677777766543 455666643
Q ss_pred h-HHHHhhcCceEe
Q 044580 152 P-AAVMAEYGFKNV 164 (269)
Q Consensus 152 ~-~~v~~~~Gf~~v 164 (269)
. ....+..||+.+
T Consensus 170 ~~~~~~R~~G~~~~ 183 (322)
T COG1879 170 NSSAEERVKGFRDA 183 (322)
T ss_pred CchHHHHHhhHHHH
Confidence 3 244455555443
No 324
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=37.35 E-value=1.8e+02 Score=26.79 Aligned_cols=63 Identities=17% Similarity=0.144 Sum_probs=43.3
Q ss_pred CCccEEEEecC--------------ceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCC--CC-HHHHHHHHHHH
Q 044580 53 RPSFGIAFDID--------------GVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGG--FR-ESKRATELSKL 115 (269)
Q Consensus 53 ~~~~a~lFDID--------------GVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~--~s-e~~~a~~Ls~~ 115 (269)
-+.++|.+|+| |+..-..+-.|...+.++.|++ .|+.+++..+-.- .+ .+.+.+ +.+.
T Consensus 39 iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~----~G~k~v~~v~P~~~~~~~~~~y~~-~~~~ 113 (292)
T cd06595 39 IPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHD----RGLKVTLNLHPADGIRAHEDQYPE-MAKA 113 (292)
T ss_pred CCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHH----CCCEEEEEeCCCcccCCCcHHHHH-HHHh
Confidence 46789999987 2444455789999999999998 5999988887541 12 222333 5456
Q ss_pred cCCCC
Q 044580 116 LGVNI 120 (269)
Q Consensus 116 lGi~i 120 (269)
.|++.
T Consensus 114 ~~~~~ 118 (292)
T cd06595 114 LGVDP 118 (292)
T ss_pred cCCCc
Confidence 66653
No 325
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=37.30 E-value=40 Score=30.18 Aligned_cols=39 Identities=15% Similarity=0.100 Sum_probs=31.1
Q ss_pred cCceeecCCccc--cchHHHHHHHHhhcCCCCceEEEEeCCCCCC
Q 044580 62 IDGVVLLGNTPI--GGSNKALKRLYQHSGDLRIPYIFLTNGGGFR 104 (269)
Q Consensus 62 IDGVL~~G~~~i--PgA~eal~~L~~~~~~~gip~iflTN~~~~s 104 (269)
+.+|.+-|++|+ +.-.+.++.|++ .|+++.+.|||+-..
T Consensus 73 ~~~V~lTGGEPll~~~l~~li~~l~~----~g~~v~leTNGtl~~ 113 (238)
T TIGR03365 73 PLHVSLSGGNPALQKPLGELIDLGKA----KGYRFALETQGSVWQ 113 (238)
T ss_pred CCeEEEeCCchhhhHhHHHHHHHHHH----CCCCEEEECCCCCcH
Confidence 467888899986 567888888887 599999999997543
No 326
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=37.09 E-value=68 Score=28.32 Aligned_cols=47 Identities=23% Similarity=0.076 Sum_probs=32.6
Q ss_pred cCceeecCCccccch---HHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHH
Q 044580 62 IDGVVLLGNTPIGGS---NKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATEL 112 (269)
Q Consensus 62 IDGVL~~G~~~iPgA---~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~L 112 (269)
.+||-+-|++|+-.. .+.++.+++ .|+++.+.|||......+.++++
T Consensus 71 ~~~V~~sGGEPll~~~~~~~l~~~~k~----~g~~i~l~TNG~~~~~~~~~~~l 120 (246)
T PRK11145 71 GGGVTASGGEAILQAEFVRDWFRACKK----EGIHTCLDTNGFVRRYDPVIDEL 120 (246)
T ss_pred CCeEEEeCccHhcCHHHHHHHHHHHHH----cCCCEEEECCCCCCcchHHHHHH
Confidence 458888899987442 377888887 48999999999753222444444
No 327
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=36.75 E-value=42 Score=33.01 Aligned_cols=43 Identities=26% Similarity=0.479 Sum_probs=33.8
Q ss_pred EEecCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCH
Q 044580 59 AFDIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRE 105 (269)
Q Consensus 59 lFDIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se 105 (269)
.|.+||+++.=-.--..-...+..+.. .++|+.++|||...++
T Consensus 337 ~~~i~~~I~TKlDET~s~G~~~s~~~e----~~~PV~YvT~GQ~VPe 379 (407)
T COG1419 337 LFPIDGLIFTKLDETTSLGNLFSLMYE----TRLPVSYVTNGQRVPE 379 (407)
T ss_pred cCCcceeEEEcccccCchhHHHHHHHH----hCCCeEEEeCCCCCCc
Confidence 468888888755555666778888888 4999999999987765
No 328
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=36.59 E-value=41 Score=28.95 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=26.9
Q ss_pred cchHHHHHHHHhhcCCCCceEEEEeCCCCC--CHHHHHHHHH
Q 044580 74 GGSNKALKRLYQHSGDLRIPYIFLTNGGGF--RESKRATELS 113 (269)
Q Consensus 74 PgA~eal~~L~~~~~~~gip~iflTN~~~~--se~~~a~~Ls 113 (269)
-||.-.++-|+. |+|++.++|.+-+ +..+.|++|+
T Consensus 88 AGaGS~letL~l-----~KPlivVvNd~LMDNHQ~ELA~qL~ 124 (170)
T KOG3349|consen 88 AGAGSCLETLRL-----GKPLIVVVNDSLMDNHQLELAKQLA 124 (170)
T ss_pred CCcchHHHHHHc-----CCCEEEEeChHhhhhHHHHHHHHHH
Confidence 688889999986 9999999998643 3455666664
No 329
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=36.46 E-value=1.6e+02 Score=26.85 Aligned_cols=12 Identities=25% Similarity=0.440 Sum_probs=9.0
Q ss_pred CCccEEEEecCC
Q 044580 208 QRVQAAFIVSDS 219 (269)
Q Consensus 208 ~~i~AI~v~~Dp 219 (269)
..++|||..+|.
T Consensus 236 ~~~~ai~~~nd~ 247 (346)
T PRK10401 236 LQLTAVFAYNDN 247 (346)
T ss_pred CCCcEEEECCcH
Confidence 357888888875
No 330
>cd01014 nicotinamidase_related Nicotinamidase_ related amidohydrolases. Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia.
Probab=36.45 E-value=1.7e+02 Score=23.99 Aligned_cols=85 Identities=11% Similarity=0.112 Sum_probs=46.5
Q ss_pred cccchHHHHHHHHhhcCCCCceEEEEeCCCC--------CCHHHHHHHHHHHcCCCCCCCcEEc----c---hHHHHHHH
Q 044580 72 PIGGSNKALKRLYQHSGDLRIPYIFLTNGGG--------FRESKRATELSKLLGVNILPCQVVQ----G---HSPFKQLF 136 (269)
Q Consensus 72 ~iPgA~eal~~L~~~~~~~gip~iflTN~~~--------~se~~~a~~Ls~~lGi~i~~~qVi~----s---~tp~~~L~ 136 (269)
.++.+.+.++..++ .|.|+++.+.... ....+....| .. ...+.|+. | .+.+..+.
T Consensus 24 ~v~~i~~li~~~r~----~~~~Vi~~~~~~~~~~~~~~gt~g~~l~~~l----~~-~~~d~v~~K~~~saf~~t~l~~~L 94 (155)
T cd01014 24 ALENIAALIAAARA----AGIPVIHVRHIDDEGGSFAPGSEGWEIHPEL----AP-LEGETVIEKTVPNAFYGTDLEEWL 94 (155)
T ss_pred HHHHHHHHHHHHHH----CCCeEEEEEeccCCCCCCCCCCCccccchhh----cC-CCCCEEEeCCCCCCcCCCCHHHHH
Confidence 34444444554455 5899988875322 1122223333 11 12233553 1 24556666
Q ss_pred HhcCCCeEEEEcCch--h----HHHHhhcCceEec
Q 044580 137 NRFENEFIVAVGKGE--P----AAVMAEYGFKNVL 165 (269)
Q Consensus 137 ~~~~~k~VlvvG~~~--~----~~v~~~~Gf~~v~ 165 (269)
++.+-+.++++|-.. + ..-+.+.||+.++
T Consensus 95 ~~~gi~~viv~G~~td~CV~~Ta~~a~~~g~~v~v 129 (155)
T cd01014 95 REAGIDHLVICGAMTEMCVDTTVRSAFDLGYDVTV 129 (155)
T ss_pred HHCCCCEEEEEeeccchhHHHHHHHHHHCCCcEEE
Confidence 667778899988643 2 2337888999876
No 331
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=35.88 E-value=76 Score=30.82 Aligned_cols=85 Identities=19% Similarity=0.144 Sum_probs=49.7
Q ss_pred HHHHHHHHhhcCCCCceEEEEeC-CCCCCHHHHHHHHHHHcCCCCCCCcEEcch-----HHHHHHHHhcCCCeEEEEcCc
Q 044580 77 NKALKRLYQHSGDLRIPYIFLTN-GGGFRESKRATELSKLLGVNILPCQVVQGH-----SPFKQLFNRFENEFIVAVGKG 150 (269)
Q Consensus 77 ~eal~~L~~~~~~~gip~iflTN-~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~-----tp~~~L~~~~~~k~VlvvG~~ 150 (269)
..+-+.|.++ .|+|++-+.. -|-..-.+..+.|.+.+|++...+.++... ..+....+...+|++.+.|.+
T Consensus 226 ~~~a~~Lee~---~GiP~~~~~~P~G~~~T~~~l~~ia~~~g~~~~~e~~i~~e~~~~~~~l~~~~~~l~Gk~~~i~~~~ 302 (426)
T cd01972 226 YYLGAALEQR---FGVPEIKAPQPYGIEATDKWLREIAKVLGMEAEAEAVIEREHERVAPEIEELRKALKGKKAIVETGA 302 (426)
T ss_pred HHHHHHHHHH---hCCCeEecCCccCHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 4455666664 7999987653 233344456667777788753333344321 223333345678888887765
Q ss_pred hh----HHHHhhcC-ceEe
Q 044580 151 EP----AAVMAEYG-FKNV 164 (269)
Q Consensus 151 ~~----~~v~~~~G-f~~v 164 (269)
.. ...+.+.| ...+
T Consensus 303 ~~~~~~~~~l~elG~~~v~ 321 (426)
T cd01972 303 AYGHLLIAVLRELGFGEVP 321 (426)
T ss_pred ccHHHHHHHHHHcCCceEE
Confidence 42 45688999 5554
No 332
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=35.62 E-value=17 Score=31.50 Aligned_cols=14 Identities=29% Similarity=0.508 Sum_probs=12.6
Q ss_pred EEEecCceeecCCc
Q 044580 58 IAFDIDGVVLLGNT 71 (269)
Q Consensus 58 ~lFDIDGVL~~G~~ 71 (269)
|+||.||||.+...
T Consensus 2 ~~fDFDgTit~~d~ 15 (214)
T TIGR03333 2 IICDFDGTITNNDN 15 (214)
T ss_pred EEeccCCCCCcchh
Confidence 79999999998775
No 333
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=35.52 E-value=57 Score=33.03 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=16.4
Q ss_pred CCCCccEEEEecCceeecCC
Q 044580 51 SQRPSFGIAFDIDGVVLLGN 70 (269)
Q Consensus 51 ~~~~~~a~lFDIDGVL~~G~ 70 (269)
..+..++.++|+|+|||-|-
T Consensus 218 ~g~~kK~LVLDLDNTLWGGV 237 (574)
T COG3882 218 SGKSKKALVLDLDNTLWGGV 237 (574)
T ss_pred hCcccceEEEecCCcccccc
Confidence 44567999999999999753
No 334
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=35.46 E-value=66 Score=29.33 Aligned_cols=53 Identities=21% Similarity=0.073 Sum_probs=37.4
Q ss_pred ccEEEE-ecCceeecCCccccc---hHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHH
Q 044580 55 SFGIAF-DIDGVVLLGNTPIGG---SNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELS 113 (269)
Q Consensus 55 ~~a~lF-DIDGVL~~G~~~iPg---A~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls 113 (269)
..++-. .++||-+.|++|... +.+.++..++ .|++.++.||+-...+.. ++|.
T Consensus 76 ~~~~~~~~~~gvt~SGGEP~~q~e~~~~~~~~ake----~Gl~~~l~TnG~~~~~~~--~~l~ 132 (260)
T COG1180 76 DKAFYSESGGGVTFSGGEPTLQAEFALDLLRAAKE----RGLHVALDTNGFLPPEAL--EELL 132 (260)
T ss_pred HHhhhcCCCCEEEEECCcchhhHHHHHHHHHHHHH----CCCcEEEEcCCCCCHHHH--HHHH
Confidence 345555 899999999999655 4455555555 499999999987544433 4553
No 335
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=35.46 E-value=3.3e+02 Score=24.49 Aligned_cols=96 Identities=14% Similarity=0.103 Sum_probs=54.3
Q ss_pred ccEEEEecCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCH----------HHHHHHHHHHcCCCCCCCc
Q 044580 55 SFGIAFDIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRE----------SKRATELSKLLGVNILPCQ 124 (269)
Q Consensus 55 ~~a~lFDIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se----------~~~a~~Ls~~lGi~i~~~q 124 (269)
..+++...|. .-..++..++++.|+++ |+ ..++||...... ..+.+.+....|. +.
T Consensus 132 ~~~Vvv~~d~-----~~~y~~i~~~l~~L~~~----g~-~~i~Tn~d~~~~~~~~~~~~~~g~~~~~i~~~~g~----~~ 197 (279)
T TIGR01452 132 VGAVVVGYDE-----HFSYAKLREACAHLREP----GC-LFVATNRDPWHPLSDGSRTPGTGSLVAAIETASGR----QP 197 (279)
T ss_pred CCEEEEecCC-----CCCHHHHHHHHHHHhcC----CC-EEEEeCCCCCCCCcCCCcccChHHHHHHHHHHhCC----ce
Confidence 3445554443 34579999999999863 65 678888764221 1122222111121 12
Q ss_pred EEc--ch-HHHHHHHHhcC--CCeEEEEcCch--hHHHHhhcCceEe
Q 044580 125 VVQ--GH-SPFKQLFNRFE--NEFIVAVGKGE--PAAVMAEYGFKNV 164 (269)
Q Consensus 125 Vi~--s~-tp~~~L~~~~~--~k~VlvvG~~~--~~~v~~~~Gf~~v 164 (269)
+.. .+ .++..+.++++ ...+++||+.. ....++.+|++.+
T Consensus 198 ~~~gKP~p~~~~~~~~~~~~~~~~~lmIGD~~~tDI~~A~~aGi~si 244 (279)
T TIGR01452 198 LVVGKPSPYMFECITENFSIDPARTLMVGDRLETDILFGHRCGMTTV 244 (279)
T ss_pred eccCCCCHHHHHHHHHHhCCChhhEEEECCChHHHHHHHHHcCCcEE
Confidence 222 22 44555555543 45788899863 4566889998875
No 336
>PRK07475 hypothetical protein; Provisional
Probab=35.44 E-value=2.2e+02 Score=25.54 Aligned_cols=82 Identities=15% Similarity=0.081 Sum_probs=57.6
Q ss_pred CCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcch-HHHHHHHHhc-CCCeEEE
Q 044580 69 GNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGH-SPFKQLFNRF-ENEFIVA 146 (269)
Q Consensus 69 G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~-tp~~~L~~~~-~~k~Vlv 146 (269)
+..+++.-.++.+.|.+ .|.-++.++=| +.+...++|.+..+++ |+++. .....+.... +.++|-+
T Consensus 60 ~~~~~~~l~~aa~~L~~----~G~d~I~~~Cg---t~~~~~~~l~~~~~VP-----v~~ss~~~v~~l~~~~~~~~kIGI 127 (245)
T PRK07475 60 DPSLLDAFVAAARELEA----EGVRAITTSCG---FLALFQRELAAALGVP-----VATSSLLQVPLIQALLPAGQKVGI 127 (245)
T ss_pred CccHHHHHHHHHHHHHH----cCCCEEEechH---HHHHHHHHHHHHcCCC-----EeccHHHHHHHHHHhccCCCeEEE
Confidence 46789999999999998 48888777654 3567788887778887 44433 3344444443 3678988
Q ss_pred EcCchh---HHHHhhcCce
Q 044580 147 VGKGEP---AAVMAEYGFK 162 (269)
Q Consensus 147 vG~~~~---~~v~~~~Gf~ 162 (269)
++.... .+.++..|+.
T Consensus 128 Ltt~~t~l~~~~l~~~Gi~ 146 (245)
T PRK07475 128 LTADASSLTPAHLLAVGVP 146 (245)
T ss_pred EeCCchhhhHHHHHhCCCC
Confidence 887543 4668999986
No 337
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=35.32 E-value=1.3e+02 Score=30.39 Aligned_cols=85 Identities=15% Similarity=0.172 Sum_probs=51.1
Q ss_pred HHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcch-----HHHHHHHHhcCCCeEEEEcCchh-
Q 044580 79 ALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGH-----SPFKQLFNRFENEFIVAVGKGEP- 152 (269)
Q Consensus 79 al~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~-----tp~~~L~~~~~~k~VlvvG~~~~- 152 (269)
+-+.|+++ .|+|++-+.=-|-..-......|.+.+|++-..+.+|... .-+........+|+|.+.|++..
T Consensus 264 ~A~~Leer---~GiP~~~~~~~Gi~~Td~~Lr~la~~~g~~~~~e~~I~~e~~~~r~~Ld~~~~~L~GKrvai~~gg~~~ 340 (513)
T TIGR01861 264 ICNELRKR---YGIPRLDIDGFGFEPLAASLRKVAMFFGIEDEAQAIIDEETARWKPELDWYKERLKGKKVCLWPGGSKL 340 (513)
T ss_pred HHHHHHHH---hCCCeEecCcCCHHHHHHHHHHHHHHhCCChhHhHhhHHHHHHHHHHHHHHHHhcCCCEEEEECCchHH
Confidence 44556654 8999986653333444566677777778764444555422 11222335568899988876532
Q ss_pred ---HHHHh-hcCceEecC
Q 044580 153 ---AAVMA-EYGFKNVLS 166 (269)
Q Consensus 153 ---~~v~~-~~Gf~~v~t 166 (269)
...+. +.|.+.+..
T Consensus 341 ~~~~~~l~~ElGmevv~~ 358 (513)
T TIGR01861 341 WHWAHVIEEEMGLKVVSV 358 (513)
T ss_pred HHHHHHHHHhCCCEEEEE
Confidence 33455 799988753
No 338
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=34.84 E-value=91 Score=24.53 Aligned_cols=50 Identities=10% Similarity=0.140 Sum_probs=37.3
Q ss_pred ecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCC
Q 044580 67 LLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNI 120 (269)
Q Consensus 67 ~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i 120 (269)
.+.+..+-|..++++.++.. ++.++++.++.+........++.+..++++
T Consensus 13 ~rAGklv~G~~~v~~aik~g----k~~lVI~A~D~s~~~kkki~~~~~~~~vp~ 62 (104)
T PRK05583 13 KKAGKLLEGYNKCEEAIKKK----KVYLIIISNDISENSKNKFKNYCNKYNIPY 62 (104)
T ss_pred HHhCCeeecHHHHHHHHHcC----CceEEEEeCCCCHhHHHHHHHHHHHcCCCE
Confidence 35677888999999999873 788899999887666666666655556663
No 339
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=33.99 E-value=1.6e+02 Score=31.80 Aligned_cols=53 Identities=19% Similarity=0.256 Sum_probs=38.9
Q ss_pred cCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCc--EEcc
Q 044580 68 LGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQ--VVQG 128 (269)
Q Consensus 68 ~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~q--Vi~s 128 (269)
--+.|=+++++|++.|++ .||.++.+|...-.| |..+.+++|+..+... ++++
T Consensus 544 ~~Dppr~~v~~aI~~l~~----AGI~v~MiTGD~~~T----A~aIa~~~Gi~~~~~~~~vi~G 598 (917)
T COG0474 544 IEDPPREDVKEAIEELRE----AGIKVWMITGDHVET----AIAIAKECGIEAEAESALVIDG 598 (917)
T ss_pred ccCCCCccHHHHHHHHHH----CCCcEEEECCCCHHH----HHHHHHHcCCCCCCCceeEeeh
Confidence 345788999999999999 599999999765444 4445567887765543 6553
No 340
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=33.95 E-value=1e+02 Score=28.48 Aligned_cols=103 Identities=13% Similarity=0.213 Sum_probs=52.1
Q ss_pred chHHHHHHHHhhc-CCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEc-c---h----HHHHHHHHhcCCCeEE
Q 044580 75 GSNKALKRLYQHS-GDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQ-G---H----SPFKQLFNRFENEFIV 145 (269)
Q Consensus 75 gA~eal~~L~~~~-~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~-s---~----tp~~~L~~~~~~k~Vl 145 (269)
|....++.+.++- .+-+|-+..++-|....+++.-+...+.+ -+.+|+=++- | . +.++.+.+. .+..+.
T Consensus 13 g~s~~idl~LDErAdRedI~vrv~gsGaKm~pe~~e~~~~~~~-~~~~pdf~I~isPN~~~PGP~~ARE~l~~-~~iP~I 90 (276)
T PF01993_consen 13 GTSVVIDLLLDERADREDIDVRVVGSGAKMGPEDVEEVVTKML-KEWDPDFVIVISPNAAAPGPTKAREMLSA-KGIPCI 90 (276)
T ss_dssp HHHHHTTGGGSTTS--SSEEEEEEEEET--SHHHHHHHHHHHH-HHH--SEEEEE-S-TTSHHHHHHHHHHHH-SSS-EE
T ss_pred chHHHHHHHHHhhhccCCceEEEeccCCCCCHHHHHHHHHHHH-HhhCCCEEEEECCCCCCCCcHHHHHHHHh-CCCCEE
Confidence 4445555555432 45689999999999888875433222211 0123443332 2 2 446666544 466788
Q ss_pred EEcCch---hHHHHhhcCceEecCccc--cccccccCCC
Q 044580 146 AVGKGE---PAAVMAEYGFKNVLSIDE--YASYFDGIDP 179 (269)
Q Consensus 146 vvG~~~---~~~v~~~~Gf~~v~t~~d--~~~~~p~ldp 179 (269)
++|++. .++.+++.||-.++-.-| +.+-..++||
T Consensus 91 vI~D~p~~k~kd~l~~~g~GYIivk~DpMIGArREFLDP 129 (276)
T PF01993_consen 91 VISDAPTKKAKDALEEEGFGYIIVKADPMIGARREFLDP 129 (276)
T ss_dssp EEEEGGGGGGHHHHHHTT-EEEEETTS------TTT--H
T ss_pred EEcCCCchhhHHHHHhcCCcEEEEecCccccccccccCH
Confidence 888864 467899988887654444 3444445666
No 341
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=33.81 E-value=81 Score=26.58 Aligned_cols=35 Identities=14% Similarity=0.288 Sum_probs=22.6
Q ss_pred ecCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCC
Q 044580 61 DIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGG 101 (269)
Q Consensus 61 DIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~ 101 (269)
.+||++..+... .+...++.+.. .++|++++.+..
T Consensus 55 ~~d~ii~~~~~~--~~~~~~~~l~~----~~ip~v~~~~~~ 89 (264)
T cd01537 55 GVDGIIIAPSDL--TAPTIVKLARK----AGIPVVLVDRDI 89 (264)
T ss_pred CCCEEEEecCCC--cchhHHHHhhh----cCCCEEEeccCC
Confidence 567777755332 22226777776 499999997764
No 342
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=33.81 E-value=44 Score=26.06 Aligned_cols=34 Identities=18% Similarity=0.071 Sum_probs=25.9
Q ss_pred cccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHH
Q 044580 72 PIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRA 109 (269)
Q Consensus 72 ~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a 109 (269)
--+...++++.+++ .|+|++.+|++...+-++.+
T Consensus 59 ~t~~~~~~~~~a~~----~g~~vi~iT~~~~s~la~~a 92 (128)
T cd05014 59 ETDELLNLLPHLKR----RGAPIIAITGNPNSTLAKLS 92 (128)
T ss_pred CCHHHHHHHHHHHH----CCCeEEEEeCCCCCchhhhC
Confidence 34677888888888 49999999998866554443
No 343
>PRK06186 hypothetical protein; Validated
Probab=33.53 E-value=36 Score=30.76 Aligned_cols=36 Identities=17% Similarity=0.230 Sum_probs=29.7
Q ss_pred EEecCceeecCC---ccccchHHHHHHHHhhcCCCCceEEEEe
Q 044580 59 AFDIDGVVLLGN---TPIGGSNKALKRLYQHSGDLRIPYIFLT 98 (269)
Q Consensus 59 lFDIDGVL~~G~---~~iPgA~eal~~L~~~~~~~gip~iflT 98 (269)
+-++||+|+-|+ +-+.|...|++.-+++ ++||.=+.
T Consensus 51 l~~~dgilvpgGfg~rg~~Gki~ai~~Are~----~iP~LGIC 89 (229)
T PRK06186 51 LAGFDGIWCVPGSPYRNDDGALTAIRFAREN----GIPFLGTC 89 (229)
T ss_pred HhhCCeeEeCCCCCcccHhHHHHHHHHHHHc----CCCeEeec
Confidence 668899999865 5789999999999985 99995544
No 344
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=33.41 E-value=60 Score=28.15 Aligned_cols=35 Identities=17% Similarity=0.371 Sum_probs=21.4
Q ss_pred cCceeecCCcc-cc-chHHHHHHHHhhcCCCCceEEEEeCC
Q 044580 62 IDGVVLLGNTP-IG-GSNKALKRLYQHSGDLRIPYIFLTNG 100 (269)
Q Consensus 62 IDGVL~~G~~~-iP-gA~eal~~L~~~~~~~gip~iflTN~ 100 (269)
+||+++-+... -+ ....+++.+.+ .|+|++++-+.
T Consensus 56 vdgiIi~~~~~~~~~~~~~~i~~~~~----~~ipvV~i~~~ 92 (273)
T cd06292 56 VRGVVFISSLHADTHADHSHYERLAE----RGLPVVLVNGR 92 (273)
T ss_pred CCEEEEeCCCCCcccchhHHHHHHHh----CCCCEEEEcCC
Confidence 57777754322 12 33455677766 49999999643
No 345
>PRK06683 hypothetical protein; Provisional
Probab=33.32 E-value=80 Score=23.78 Aligned_cols=50 Identities=8% Similarity=0.128 Sum_probs=34.5
Q ss_pred ecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCC
Q 044580 67 LLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNI 120 (269)
Q Consensus 67 ~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i 120 (269)
.+.+..+-|..+.++.++.. ....+|+..+.+..-.+....+.+..++++
T Consensus 7 ~~agk~v~G~~~v~kaik~g----kaklViiA~Da~~~~~~~i~~~~~~~~Vpv 56 (82)
T PRK06683 7 SNAENVVVGHKRTLEAIKNG----IVKEVVIAEDADMRLTHVIIRTALQHNIPI 56 (82)
T ss_pred HhCCCEEEcHHHHHHHHHcC----CeeEEEEECCCCHHHHHHHHHHHHhcCCCE
Confidence 45667888999999999873 778888888765444444444445556664
No 346
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=33.23 E-value=1.1e+02 Score=29.54 Aligned_cols=86 Identities=19% Similarity=0.233 Sum_probs=47.0
Q ss_pred HHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCC-----CCCcEEcch----HHHHHH-----HHhcCCC
Q 044580 77 NKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNI-----LPCQVVQGH----SPFKQL-----FNRFENE 142 (269)
Q Consensus 77 ~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i-----~~~qVi~s~----tp~~~L-----~~~~~~k 142 (269)
..+-+.|.++ .|+|++...=-|-.......+.+.+.+|++. .++.++... ..+.+. .+.+.+|
T Consensus 226 ~~~a~~L~~~---~GiP~~~~~p~G~~~t~~~l~~i~~~~g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~l~gk 302 (430)
T cd01981 226 LSAALYLEEE---FGMPSVKITPIGVVATARFLREIQELLGIQIIPELVNVEPYIDSQTRWVSQSARSSRSIDSQNLTGK 302 (430)
T ss_pred HHHHHHHHHH---hCCCeEeccCCChHHHHHHHHHHHHHhCCccccccCChhHHHHhccchhhhhhhhhhhhhhccccCC
Confidence 4455556653 7999965522222334455666666778762 233333211 111111 0234578
Q ss_pred eEEEEcCchh----HHHH-hhcCceEec
Q 044580 143 FIVAVGKGEP----AAVM-AEYGFKNVL 165 (269)
Q Consensus 143 ~VlvvG~~~~----~~v~-~~~Gf~~v~ 165 (269)
+|.++|+... .+.+ +++|++.+.
T Consensus 303 rv~i~g~~~~~~~l~~~L~~elG~~vv~ 330 (430)
T cd01981 303 RAFVFGDATHVAAATRILAREMGFRVVG 330 (430)
T ss_pred eEEEEcChHHHHHHHHHHHHHcCCEEEe
Confidence 9999987532 3335 599999875
No 347
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=33.16 E-value=61 Score=27.91 Aligned_cols=33 Identities=21% Similarity=0.518 Sum_probs=21.1
Q ss_pred ecCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCC
Q 044580 61 DIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNG 100 (269)
Q Consensus 61 DIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~ 100 (269)
-+||+++.+.... ...++.+.+ .++|++++-+.
T Consensus 55 ~vdgiIi~~~~~~---~~~~~~l~~----~~ipvV~~~~~ 87 (265)
T cd06299 55 RVDGIIVVPHEQS---AEQLEDLLK----RGIPVVFVDRE 87 (265)
T ss_pred CCCEEEEcCCCCC---hHHHHHHHh----CCCCEEEEecc
Confidence 4577776554321 245788877 49999988543
No 348
>PF12694 MoCo_carrier: Putative molybdenum carrier; InterPro: IPR024755 The structure of proteins in this family contain central beta strands with flanking alpha helices. The structure is similar to that of a molybdenum cofactor carrier protein.; PDB: 3IMK_A.
Probab=32.85 E-value=90 Score=26.39 Aligned_cols=35 Identities=14% Similarity=0.280 Sum_probs=22.4
Q ss_pred EEecCceeecCCcccc-chHHHHHHHHhhcCCCCceEEEE
Q 044580 59 AFDIDGVVLLGNTPIG-GSNKALKRLYQHSGDLRIPYIFL 97 (269)
Q Consensus 59 lFDIDGVL~~G~~~iP-gA~eal~~L~~~~~~~gip~ifl 97 (269)
+-|-||||+-....+. |..-.++.-++ .++|++++
T Consensus 61 V~DsDgTlI~~~g~l~GGt~lT~~~a~~----~~KP~l~i 96 (145)
T PF12694_consen 61 VRDSDGTLIFTRGELTGGTALTVEFARK----HGKPCLHI 96 (145)
T ss_dssp HHTSSEEEEEESSS--HHHHHHHHHHHH----TT--EEEE
T ss_pred hhhcCeEEEEecCCCCcHHHHHHHHHHH----hCCCEEEE
Confidence 4588999997666555 55555666665 69999888
No 349
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=32.64 E-value=70 Score=31.71 Aligned_cols=85 Identities=11% Similarity=0.180 Sum_probs=49.3
Q ss_pred HHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCC--CcEEcch-HHH----HHHHHhcCCCeEEEEcCc-
Q 044580 79 ALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILP--CQVVQGH-SPF----KQLFNRFENEFIVAVGKG- 150 (269)
Q Consensus 79 al~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~--~qVi~s~-tp~----~~L~~~~~~k~VlvvG~~- 150 (269)
+-+.|+++ .|+|++-+.=-|-..-.+..+.+.+.+|.++.. +.++... ..+ ....+...+|++.+.|++
T Consensus 269 ~A~~Le~~---fGiP~~~~~~~Gi~~T~~~Lr~ia~~~g~~i~~~~e~~I~~e~~~~~~~ld~~~~~L~GKrv~i~~g~~ 345 (466)
T TIGR01282 269 ISRHMEEK---YGIPWMEYNFFGPTKIAESLRKIAEFFDDEIKEKAEEVIAKYQPAVDAVIAKYRPRLEGKTVMLYVGGL 345 (466)
T ss_pred HHHHHHHH---hCCceEeCCCCCHHHHHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 44556663 799998764223333445666676677765431 2334321 112 223345678998887743
Q ss_pred ---hhHHHHhhcCceEecC
Q 044580 151 ---EPAAVMAEYGFKNVLS 166 (269)
Q Consensus 151 ---~~~~v~~~~Gf~~v~t 166 (269)
.....+++.|.+.+.+
T Consensus 346 ~~~~~~~~l~ELGmevv~~ 364 (466)
T TIGR01282 346 RPRHVIGAFEDLGMEVIGT 364 (466)
T ss_pred cHHHHHHHHHHCCCEEEEE
Confidence 2345689999998754
No 350
>PRK04531 acetylglutamate kinase; Provisional
Probab=32.24 E-value=1.4e+02 Score=29.23 Aligned_cols=89 Identities=22% Similarity=0.303 Sum_probs=57.5
Q ss_pred CCchhhhhHHHHhHHHHHHHHhhccccccccccccccccccccccccccCCCCccEEEEecCceeecCCccccchHHHHH
Q 044580 2 TQSSEREEIMRLSILAVAKALQSQNKKKLSPLLFSFSTASRSFSQLSSQSQRPSFGIAFDIDGVVLLGNTPIGGSNKALK 81 (269)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~lFDIDGVL~~G~~~iPgA~eal~ 81 (269)
++.+.|+.|.+| |.-. +++|...+.+..|+.+ .+++.+++=|.|-++.. .++.....|.
T Consensus 2 ~~~~~~~~~~~~--l~~~-----~~~~e~~~~l~~F~~~------------~~~~~~VIKiGG~~l~~--~~~~l~~dla 60 (398)
T PRK04531 2 ANMKTRQIIVRL--LSSM-----ASAKEISQYLKRFSQL------------DAERFAVIKVGGAVLRD--DLEALASSLS 60 (398)
T ss_pred CCcchHHHHHHH--HHhc-----CChhhhHHHHHHHhCc------------CCCcEEEEEEChHHhhc--CHHHHHHHHH
Confidence 456677777664 1111 3445455555444322 14588889999988863 3577788899
Q ss_pred HHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCC
Q 044580 82 RLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNI 120 (269)
Q Consensus 82 ~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i 120 (269)
.|.. .|++++++..+| .+.-+.| +.+|++.
T Consensus 61 ~L~~----~G~~~VlVHGgg----pqI~~~l-~~~gie~ 90 (398)
T PRK04531 61 FLQE----VGLTPIVVHGAG----PQLDAEL-DAAGIEK 90 (398)
T ss_pred HHHH----CCCcEEEEECCC----HHHHHHH-HHcCCCc
Confidence 9988 599999998765 2333455 5889863
No 351
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=32.24 E-value=3.7e+02 Score=24.03 Aligned_cols=87 Identities=16% Similarity=0.169 Sum_probs=51.7
Q ss_pred cccchHHHHHHHHhhcCCCCceEEEEeCCCCCCH---------HHHHHHHHHHcCCCCCCCcEEc-ch-HHHHHHHHhcC
Q 044580 72 PIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRE---------SKRATELSKLLGVNILPCQVVQ-GH-SPFKQLFNRFE 140 (269)
Q Consensus 72 ~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se---------~~~a~~Ls~~lGi~i~~~qVi~-s~-tp~~~L~~~~~ 140 (269)
.+++..++++.|+. .++|+++.||...... ..+...+....|.+ + .++- .+ ..+....++++
T Consensus 121 ~y~~l~~a~~~L~~----~~~~~~iatn~~~~~~~~~~~~~g~g~~~~~i~~~~~~~--~-~~~gKP~p~~~~~~~~~~~ 193 (257)
T TIGR01458 121 SYQILNQAFRLLLD----GAKPLLIAIGKGRYYKRKDGLALDVGPFVTALEYATDTK--A-TVVGKPSKTFFLEALRATG 193 (257)
T ss_pred CHHHHHHHHHHHHc----CCCCEEEEeCCCCCCcCCCCCCCCchHHHHHHHHHhCCC--c-eeecCCCHHHHHHHHHHhC
Confidence 46889999999987 3889999999764322 12233332222222 1 1121 22 44555555543
Q ss_pred --CCeEEEEcCch--hHHHHhhcCceEec
Q 044580 141 --NEFIVAVGKGE--PAAVMAEYGFKNVL 165 (269)
Q Consensus 141 --~k~VlvvG~~~--~~~v~~~~Gf~~v~ 165 (269)
.+.++++|+.. ....++..|++.+.
T Consensus 194 ~~~~~~~~vGD~~~~Di~~a~~~G~~~i~ 222 (257)
T TIGR01458 194 CEPEEAVMIGDDCRDDVGGAQDCGMRGIQ 222 (257)
T ss_pred CChhhEEEECCCcHHHHHHHHHcCCeEEE
Confidence 46788999764 45568999998763
No 352
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=32.08 E-value=82 Score=31.17 Aligned_cols=85 Identities=12% Similarity=0.160 Sum_probs=47.8
Q ss_pred HHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcch-----HHHHHHHHhcCCCeEEEEcCchh
Q 044580 78 KALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGH-----SPFKQLFNRFENEFIVAVGKGEP 152 (269)
Q Consensus 78 eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~-----tp~~~L~~~~~~k~VlvvG~~~~ 152 (269)
.+-+.|+++ .|+|++-+.=-|-..-....++|.+.+|++...+.++... .-+......+.+|+|.+.|.+..
T Consensus 262 ~~A~~Leer---~GiP~~~~~p~Gi~~T~~~L~~la~~~g~~~~~e~~I~~e~~~~~~~Ld~~~~~L~GkrvaI~~~~~~ 338 (461)
T TIGR01860 262 YIANELKKR---YGIPRLDVDTWGFNYMAEALRKIGAFFGIEDKAEEVIAEEYAKYKPKLDWYKERLQGKKMCIWTGGPR 338 (461)
T ss_pred HHHHHHHHH---hCCCeecCCcCCHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCCch
Confidence 355666664 7999986642233334455666666778764333333311 11222334567899888765432
Q ss_pred ----HHHHh-hcCceEec
Q 044580 153 ----AAVMA-EYGFKNVL 165 (269)
Q Consensus 153 ----~~v~~-~~Gf~~v~ 165 (269)
...+. +.|.+.+.
T Consensus 339 ~~~~~~~l~~ElGmevv~ 356 (461)
T TIGR01860 339 LWHWTKALEDDLGMQVVA 356 (461)
T ss_pred HHHHHHHHHHhCCCEEEE
Confidence 24455 79998764
No 353
>TIGR03164 UHCUDC OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model.
Probab=31.82 E-value=79 Score=26.74 Aligned_cols=43 Identities=14% Similarity=0.197 Sum_probs=32.4
Q ss_pred cchHHHHHHHHhhc-CCCCceEEEEeCCCCCCHHHHHHHHHHHcCC
Q 044580 74 GGSNKALKRLYQHS-GDLRIPYIFLTNGGGFRESKRATELSKLLGV 118 (269)
Q Consensus 74 PgA~eal~~L~~~~-~~~gip~iflTN~~~~se~~~a~~Ls~~lGi 118 (269)
+.-.+.|..|+... .++|.|||++-|| ++..++.+.|.++++=
T Consensus 90 ~~~~~~L~~lN~~Y~~kFGfpFvi~v~g--~~~~~Il~~l~~Rl~n 133 (157)
T TIGR03164 90 QEEFARFTRLNNAYRARFGFPFIMAVKG--KTKQSILAAFEARLNN 133 (157)
T ss_pred HHHHHHHHHHHHHHHHHCCCeeEEeeCC--CCHHHHHHHHHHHHCC
Confidence 44566677776654 5789999999886 5788889889878773
No 354
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=31.72 E-value=99 Score=23.37 Aligned_cols=46 Identities=15% Similarity=0.305 Sum_probs=32.8
Q ss_pred ccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCC
Q 044580 71 TPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNI 120 (269)
Q Consensus 71 ~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i 120 (269)
..+-|..+.++.++.. +...+|+.++.+..-......+.+..++++
T Consensus 8 Klv~G~~~vlkaIk~g----kakLViiA~Da~~~~~k~i~~~c~~~~Vpv 53 (82)
T PRK13601 8 KRVVGAKQTLKAITNC----NVLQVYIAKDAEEHVTKKIKELCEEKSIKI 53 (82)
T ss_pred cEEEchHHHHHHHHcC----CeeEEEEeCCCCHHHHHHHHHHHHhCCCCE
Confidence 5667889999999873 788899998876544444444555566665
No 355
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=31.60 E-value=1.3e+02 Score=28.05 Aligned_cols=61 Identities=13% Similarity=0.005 Sum_probs=42.2
Q ss_pred CCccEEEEecC-----c--eeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCC
Q 044580 53 RPSFGIAFDID-----G--VVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGV 118 (269)
Q Consensus 53 ~~~~a~lFDID-----G--VL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi 118 (269)
-+..+|.+|+| | ...-..+-+|...+.++.|++ .|+.+++..+-.-......-++. ++.|+
T Consensus 38 iP~d~i~lD~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~----~G~kv~~~i~P~v~~~~~~y~e~-~~~g~ 105 (319)
T cd06591 38 IPLDVIVQDWFYWPKQGWGEWKFDPERFPDPKAMVRELHE----MNAELMISIWPTFGPETENYKEM-DEKGY 105 (319)
T ss_pred CCccEEEEechhhcCCCceeEEEChhhCCCHHHHHHHHHH----CCCEEEEEecCCcCCCChhHHHH-HHCCE
Confidence 36789999986 4 555556789999999999998 59999887765433323334444 24554
No 356
>TIGR03180 UraD_2 OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model. This model is a separate (but related) clade from that represented by TIGR3164. This model places a second homolog in streptomyces species which (are not in the vicinity of other urate catabolism associated genes) below the trusted cutoff.
Probab=31.36 E-value=82 Score=26.69 Aligned_cols=43 Identities=12% Similarity=0.018 Sum_probs=32.7
Q ss_pred cchHHHHHHHHhhc-CCCCceEEEEeCCCCCCHHHHHHHHHHHcCC
Q 044580 74 GGSNKALKRLYQHS-GDLRIPYIFLTNGGGFRESKRATELSKLLGV 118 (269)
Q Consensus 74 PgA~eal~~L~~~~-~~~gip~iflTN~~~~se~~~a~~Ls~~lGi 118 (269)
+...+.|..|+... .++|.|||++-+| ++..++.+.+.++++=
T Consensus 90 ~~~~~~L~~lN~~Y~~kFGfpFii~v~g--~s~~~IL~~l~~Rl~n 133 (158)
T TIGR03180 90 EETRAALLEGNAAYEEKFGRIFLIRAAG--RSAEEMLDALQARLPN 133 (158)
T ss_pred HHHHHHHHHHHHHHHHHCCCeEEEeeCC--CCHHHHHHHHHHHhCC
Confidence 45566677776654 5789999999884 7888999999888873
No 357
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]
Probab=31.29 E-value=75 Score=30.50 Aligned_cols=81 Identities=23% Similarity=0.223 Sum_probs=53.0
Q ss_pred CceeecCC-c--cccchHHHHHHHHhhcCCCCceEEEEeCCCCCC-----HHHHHHHHHHHcCCCCCCCcEEc---chHH
Q 044580 63 DGVVLLGN-T--PIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFR-----ESKRATELSKLLGVNILPCQVVQ---GHSP 131 (269)
Q Consensus 63 DGVL~~G~-~--~iPgA~eal~~L~~~~~~~gip~iflTN~~~~s-----e~~~a~~Ls~~lGi~i~~~qVi~---s~tp 131 (269)
+|++..|+ . .||+..+.++.+..+-...++-.--++|-++.- -+..++.|++++|.++++++|.. |.+.
T Consensus 30 ~g~imLggGNPa~iPem~~~f~~~~aemla~~~~~e~~cnY~~pQG~~~li~ala~~l~~~ygwnit~~NIalTnGSQs~ 109 (417)
T COG3977 30 PGAIMLGGGNPARIPEMDDYFQDLLAEMLASGKATEALCNYDGPQGKAVLIDALAKMLRREYGWNITAQNIALTNGSQSA 109 (417)
T ss_pred CCceeeCCCCcccChhHHHHHHHHHHHHHhcchHHHHHhcCCCCcchhHHHHHHHHHHHHHhCCCCccceeeecCCccch
Confidence 34454433 3 488888777665543222354555566665432 34567888889999999999975 5688
Q ss_pred HHHHHHhcCCCe
Q 044580 132 FKQLFNRFENEF 143 (269)
Q Consensus 132 ~~~L~~~~~~k~ 143 (269)
+-|++.-+.++.
T Consensus 110 fFYlfNlF~G~~ 121 (417)
T COG3977 110 FFYLFNLFAGRR 121 (417)
T ss_pred HHHHHHHhcCcc
Confidence 989988776543
No 358
>PF06385 Baculo_LEF-11: Baculovirus LEF-11 protein; InterPro: IPR009429 This family consists of several Baculovirus LEF-11 proteins. The exact function of this family is unknown although it has been shown that LEF-11 is required for viral DNA replication during the infection cycle [] and plays a role in late/very late gene activation.; GO: 0006355 regulation of transcription, DNA-dependent, 0019058 viral infectious cycle
Probab=31.12 E-value=91 Score=24.43 Aligned_cols=58 Identities=10% Similarity=0.143 Sum_probs=45.0
Q ss_pred EEEEecCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCC
Q 044580 57 GIAFDIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVN 119 (269)
Q Consensus 57 a~lFDIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~ 119 (269)
-.-+|+++|+-+-.+ ++...-.+.++++ ....++...++..+.-....++|...+.++
T Consensus 19 K~~~d~~nV~aHv~~--~~F~~~~~yIr~n---l~~~~I~~~d~~~k~v~~H~~Ri~~if~L~ 76 (94)
T PF06385_consen 19 KHTNDTENVCAHVED--PGFEEIKDYIREN---LDKAFIIHGDCSKKRVAPHHKRINRIFNLP 76 (94)
T ss_pred hccCcchhHHHHhcc--cchHHHHHHHHHh---hcccEEEeCCCCcccHHHHHHHHHHHHcCc
Confidence 345789998887666 7777777778874 677778887877788888889998777776
No 359
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=31.11 E-value=80 Score=33.11 Aligned_cols=95 Identities=18% Similarity=0.347 Sum_probs=54.2
Q ss_pred CceeecCCccccchHHHH--HHHHhhcCCCCceEE------EEeCCCCCCHHHHHHHHHHHcCCC-----CCCCcEEcch
Q 044580 63 DGVVLLGNTPIGGSNKAL--KRLYQHSGDLRIPYI------FLTNGGGFRESKRATELSKLLGVN-----ILPCQVVQGH 129 (269)
Q Consensus 63 DGVL~~G~~~iPgA~eal--~~L~~~~~~~gip~i------flTN~~~~se~~~a~~Ls~~lGi~-----i~~~qVi~s~ 129 (269)
-|||++|. ||-.... +.+- +++|+||+ +++.-+|.+|+..-+-+.+..+.. |++=+-|++.
T Consensus 224 rGvLlHGP---PGCGKT~lA~AiA---gel~vPf~~isApeivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pk 297 (802)
T KOG0733|consen 224 RGVLLHGP---PGCGKTSLANAIA---GELGVPFLSISAPEIVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPK 297 (802)
T ss_pred CceeeeCC---CCccHHHHHHHHh---hhcCCceEeecchhhhcccCcccHHHHHHHHHHHhccCCeEEEeecccccccc
Confidence 37899997 7755542 2222 35899995 566778889887776665444432 2222223220
Q ss_pred -----------------HHHHHHH-HhcCCCeEEEEcCc----hhHHHHhhcC-ceE
Q 044580 130 -----------------SPFKQLF-NRFENEFIVAVGKG----EPAAVMAEYG-FKN 163 (269)
Q Consensus 130 -----------------tp~~~L~-~~~~~k~VlvvG~~----~~~~v~~~~G-f~~ 163 (269)
+.|..|. ++..++.|+|+|.. .+.-.|+..| |..
T Consensus 298 Re~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdr 354 (802)
T KOG0733|consen 298 REEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDR 354 (802)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHhccccccc
Confidence 2222221 12346789999963 2345577787 544
No 360
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=31.06 E-value=98 Score=31.12 Aligned_cols=87 Identities=15% Similarity=0.155 Sum_probs=50.0
Q ss_pred HHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCC--------CcEEcc--hHHH--HHHH-----Hhc
Q 044580 77 NKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILP--------CQVVQG--HSPF--KQLF-----NRF 139 (269)
Q Consensus 77 ~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~--------~qVi~s--~tp~--~~L~-----~~~ 139 (269)
..+-+.|.++ .|+|++...=-|-.......+.|.+.+|.+... +.++.- .... ..+. +.+
T Consensus 227 ~~~A~~Le~~---fgiP~i~~~PiGi~~T~~fLr~la~~lg~~~~~i~~~e~~~e~~i~~~~~~~~~~~~~~r~~d~~~l 303 (513)
T CHL00076 227 LMTAKYLEKE---FGMPYISTTPMGIVDTAECIRQIQKILNKLASDILEKKVDYEKYIDQQTRFVSQAAWFSRSIDCQNL 303 (513)
T ss_pred HHHHHHHHHH---hCCCeEeeccCCHHHHHHHHHHHHHHhCCCcchhhhchhhHHHHHHHhhhhhhhhhHhhhhhhcccc
Confidence 4456666664 899997643333344556677777778876431 112211 1100 0111 245
Q ss_pred CCCeEEEEcCchh----HHHH-hhcCceEecC
Q 044580 140 ENEFIVAVGKGEP----AAVM-AEYGFKNVLS 166 (269)
Q Consensus 140 ~~k~VlvvG~~~~----~~v~-~~~Gf~~v~t 166 (269)
.+|+++++|++.. ...| ++.|+..+.+
T Consensus 304 ~Gkrv~I~gd~~~a~~l~~~L~~ELGm~vv~~ 335 (513)
T CHL00076 304 TGKKAVVFGDATHAASMTKILAREMGIRVSCA 335 (513)
T ss_pred CCCEEEEEcCchHHHHHHHHHHHhCCCEEEEe
Confidence 6799999987632 3445 6999998754
No 361
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=30.88 E-value=1.2e+02 Score=28.60 Aligned_cols=57 Identities=18% Similarity=0.189 Sum_probs=37.1
Q ss_pred CccEEEEecCceeecCCccccchHHHHHHHHhhcCCCC-ceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcc
Q 044580 54 PSFGIAFDIDGVVLLGNTPIGGSNKALKRLYQHSGDLR-IPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQG 128 (269)
Q Consensus 54 ~~~a~lFDIDGVL~~G~~~iPgA~eal~~L~~~~~~~g-ip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s 128 (269)
..+.+.|=.+| -....|.-.|.++.+++ .| ++.++|||++- .+..+.| . .++|++.|
T Consensus 79 ~pd~vtis~~G----EPTLy~~L~elI~~~k~----~g~~~tflvTNgsl---pdv~~~L----~---~~dql~~s 136 (296)
T COG0731 79 EPDHVTISLSG----EPTLYPNLGELIEEIKK----RGKKTTFLVTNGSL---PDVLEEL----K---LPDQLYVS 136 (296)
T ss_pred CCCEEEEeCCC----CcccccCHHHHHHHHHh----cCCceEEEEeCCCh---HHHHHHh----c---cCCEEEEE
Confidence 34555555555 12345778888888888 47 79999999974 4555555 2 35566654
No 362
>COG2710 NifD Nitrogenase molybdenum-iron protein, alpha and beta chains [Energy production and conversion]
Probab=30.68 E-value=1.7e+02 Score=28.88 Aligned_cols=87 Identities=23% Similarity=0.312 Sum_probs=55.4
Q ss_pred HHHHHHHHhhcCCCCceEEEE-eCCCCCCHHHHHHHHHHHcCC-CCCCCcEEcch-HHH----HHHHHhcCCCeEEEEcC
Q 044580 77 NKALKRLYQHSGDLRIPYIFL-TNGGGFRESKRATELSKLLGV-NILPCQVVQGH-SPF----KQLFNRFENEFIVAVGK 149 (269)
Q Consensus 77 ~eal~~L~~~~~~~gip~ifl-TN~~~~se~~~a~~Ls~~lGi-~i~~~qVi~s~-tp~----~~L~~~~~~k~VlvvG~ 149 (269)
.++.+.|.+ +.|+|++.. +.-|....+.....+++.+|. .-.++.++-.. .-. .....++++|++.+.|+
T Consensus 245 ~~~a~~~~~---~~gip~~~~~~~~G~~~t~~~l~~la~~~g~~~~~~e~v~~e~~~l~d~~~d~~~~~l~gk~v~I~~~ 321 (456)
T COG2710 245 RYLARYLEE---RFGIPWIEVPSPLGIENTDRFLRNLAKLLGKIEEIPEEVIEERGALIDAELDRYRPRLSGKKVAIYGG 321 (456)
T ss_pred HHHHHHHHH---HhCCCeEecCCCcCchHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 334455545 379999999 666666677888888888894 22345555422 111 22445667899988888
Q ss_pred chh----HHHHhhcCceEecC
Q 044580 150 GEP----AAVMAEYGFKNVLS 166 (269)
Q Consensus 150 ~~~----~~v~~~~Gf~~v~t 166 (269)
+.. ....++.|.+.+..
T Consensus 322 ~~~~~~~~~~~~elgm~~v~~ 342 (456)
T COG2710 322 PDAIHLLAAFEEELGMEPVLV 342 (456)
T ss_pred CcchHHHHHHHHHcCCEEEEE
Confidence 633 23456799887654
No 363
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=30.58 E-value=80 Score=26.66 Aligned_cols=33 Identities=24% Similarity=0.440 Sum_probs=21.5
Q ss_pred ecCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCC
Q 044580 61 DIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNG 100 (269)
Q Consensus 61 DIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~ 100 (269)
.+||++..+.. +.+.. ++.+.+ .++|++++.+.
T Consensus 55 ~~d~iii~~~~--~~~~~-~~~~~~----~~ipvv~~~~~ 87 (264)
T cd06267 55 RVDGIILAPSR--LDDEL-LEELAA----LGIPVVLVDRP 87 (264)
T ss_pred CcCEEEEecCC--cchHH-HHHHHH----cCCCEEEeccc
Confidence 56777765443 23333 777776 49999998765
No 364
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=30.39 E-value=1.1e+02 Score=29.92 Aligned_cols=54 Identities=4% Similarity=0.075 Sum_probs=41.5
Q ss_pred CCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEc
Q 044580 69 GNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQ 127 (269)
Q Consensus 69 G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~ 127 (269)
|.+++.-|.+++++=.. +..+++-|..-..|+++...+....+++++|+++|.-
T Consensus 59 GErVLW~Avr~~q~k~~-----n~~~viYsGD~n~t~~~IL~k~k~~F~idlDs~nI~F 112 (465)
T KOG1387|consen 59 GERVLWKAVRITQRKFP-----NNVIVIYSGDFNVTPENILNKVKNKFDIDLDSDNIFF 112 (465)
T ss_pred cceehhHHHHHHHHhCC-----CceEEEEeCCCCCCHHHHHHHHHHhcCceecccceEE
Confidence 44567667666654332 5667888887789999999999889999999999874
No 365
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=30.28 E-value=76 Score=27.39 Aligned_cols=44 Identities=20% Similarity=0.206 Sum_probs=28.7
Q ss_pred CcE-EcchHHHHHHHHh--------cCCCeEEEEcCchhHHHHhhcCceEecCc
Q 044580 123 CQV-VQGHSPFKQLFNR--------FENEFIVAVGKGEPAAVMAEYGFKNVLSI 167 (269)
Q Consensus 123 ~qV-i~s~tp~~~L~~~--------~~~k~VlvvG~~~~~~v~~~~Gf~~v~t~ 167 (269)
+.| ++|...++.+.+. ..+.+++++|. ...+.++++|++....+
T Consensus 54 d~iiftS~~av~~~~~~~~~~~~~~~~~~~~~avG~-~Ta~~l~~~G~~~~~~~ 106 (249)
T PRK05928 54 DWVIFTSKNAVEFLLSALKKKKLKWPKNKKYAAIGE-KTALALKKLGGKVVFVP 106 (249)
T ss_pred CEEEEECHHHHHHHHHHHHhcCcCCCCCCEEEEECH-HHHHHHHHcCCCccccC
Confidence 444 4577666665543 33568888885 45677889999876433
No 366
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=30.14 E-value=1.4e+02 Score=25.27 Aligned_cols=95 Identities=14% Similarity=0.057 Sum_probs=49.2
Q ss_pred ecCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCC-cEEcchHHHHHHHHh-
Q 044580 61 DIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPC-QVVQGHSPFKQLFNR- 138 (269)
Q Consensus 61 DIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~-qVi~s~tp~~~L~~~- 138 (269)
+.|+++......+....+.+..... ....+++++.+... -++.| +..|+....- .-.++-..++.+.+.
T Consensus 49 ~~~~iiftS~~av~~~~~~~~~~~~-~~~~~~~~~avG~~-------Ta~~l-~~~g~~~~~~~~~~~~~~L~~~i~~~~ 119 (239)
T cd06578 49 EYDWLIFTSPNAVEAFFEALEELGL-RALAGLKIAAVGPK-------TAEAL-REAGLTADFVPEEGDSEGLLELLELQD 119 (239)
T ss_pred CCCEEEEECHHHHHHHHHHHHhhCC-ccccCCEEEEECHH-------HHHHH-HHcCCCceeCCCccCHHHHHHHHHhcC
Confidence 7888888886444333333332100 01136666655432 24456 5788864311 111122444444443
Q ss_pred cCCCeEEEEcCc----hhHHHHhhcCceEe
Q 044580 139 FENEFIVAVGKG----EPAAVMAEYGFKNV 164 (269)
Q Consensus 139 ~~~k~VlvvG~~----~~~~v~~~~Gf~~v 164 (269)
..+++|++..++ .+.+.+++.|+...
T Consensus 120 ~~~~~il~~~g~~~~~~l~~~L~~~g~~v~ 149 (239)
T cd06578 120 GKGKRILRPRGGRAREDLAEALRERGAEVD 149 (239)
T ss_pred CCCCEEEEEcCcchhHHHHHHHHHCCCEEE
Confidence 366777776554 33566788898654
No 367
>COG1923 Hfq Uncharacterized host factor I protein [General function prediction only]
Probab=30.13 E-value=54 Score=24.75 Aligned_cols=20 Identities=45% Similarity=0.647 Sum_probs=15.7
Q ss_pred HHHHHHHhhcCCCCceE-EEEeCCC
Q 044580 78 KALKRLYQHSGDLRIPY-IFLTNGG 101 (269)
Q Consensus 78 eal~~L~~~~~~~gip~-iflTN~~ 101 (269)
.+++.++++ ++|+ +||.||-
T Consensus 10 ~fLn~~Rk~----~i~VtIfLvNG~ 30 (77)
T COG1923 10 PFLNALRKE----KIPVTIFLVNGF 30 (77)
T ss_pred HHHHHHHhc----CCeEEEEEEcCE
Confidence 466777875 8999 9999983
No 368
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=29.99 E-value=1.8e+02 Score=24.96 Aligned_cols=42 Identities=17% Similarity=0.032 Sum_probs=33.2
Q ss_pred ccEEEEecCce--eecCCccccchHHHHHHHHhhcCCCCceEEEEeCCC
Q 044580 55 SFGIAFDIDGV--VLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGG 101 (269)
Q Consensus 55 ~~a~lFDIDGV--L~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~ 101 (269)
..+.+-|++-- +.|.-.++|+|.++++.|.+ ...+.++|-..
T Consensus 50 ~~g~i~~il~ep~fFRnL~V~p~aq~v~keLt~-----~y~vYivtaam 93 (180)
T COG4502 50 ECGKIYDILKEPHFFRNLGVQPFAQTVLKELTS-----IYNVYIVTAAM 93 (180)
T ss_pred cCCeeeeeccCcchhhhcCccccHHHHHHHHHh-----hheEEEEEecc
Confidence 45677777665 77778899999999999998 67788888653
No 369
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=29.95 E-value=1e+02 Score=29.95 Aligned_cols=41 Identities=12% Similarity=0.200 Sum_probs=24.8
Q ss_pred ecCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCH
Q 044580 61 DIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRE 105 (269)
Q Consensus 61 DIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se 105 (269)
.++|+++.=-.--.....++..+.. .++|+.|+|+|...++
T Consensus 313 ~~~~~I~TKlDet~~~G~~l~~~~~----~~~Pi~yit~Gq~vPe 353 (388)
T PRK12723 313 SYKTVIFTKLDETTCVGNLISLIYE----MRKEVSYVTDGQIVPH 353 (388)
T ss_pred CCCEEEEEeccCCCcchHHHHHHHH----HCCCEEEEeCCCCChh
Confidence 4555555322222333345666666 4999999999987743
No 370
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=29.85 E-value=59 Score=28.73 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=17.9
Q ss_pred CCccEEEEecCCccchhhHHHHHHHHHhCCCC
Q 044580 208 QRVQAAFIVSDSVDWSRDIQVLCDILRTGGLP 239 (269)
Q Consensus 208 ~~i~AI~v~~Dp~dW~~diQii~DlL~s~G~~ 239 (269)
++++|||..+|..-- -+++.|...|..
T Consensus 189 ~~~~ai~~~nd~~A~-----g~l~al~~~G~~ 215 (280)
T cd06303 189 PDVDFIYACSTDIAL-----GASDALKELGRE 215 (280)
T ss_pred CCCcEEEECCcHHHH-----HHHHHHHHcCCC
Confidence 468999998886321 256677776654
No 371
>PRK13798 putative OHCU decarboxylase; Provisional
Probab=29.62 E-value=92 Score=26.64 Aligned_cols=43 Identities=12% Similarity=0.075 Sum_probs=32.6
Q ss_pred cchHHHHHHHHhhc-CCCCceEEEEeCCCCCCHHHHHHHHHHHcCC
Q 044580 74 GGSNKALKRLYQHS-GDLRIPYIFLTNGGGFRESKRATELSKLLGV 118 (269)
Q Consensus 74 PgA~eal~~L~~~~-~~~gip~iflTN~~~~se~~~a~~Ls~~lGi 118 (269)
+...+.|..|+... .++|.|||++-++ ++.+++.+.|.++++=
T Consensus 95 ~~~~~~l~~lN~~Y~~kFGfpFii~v~g--~s~~~IL~~l~~Rl~n 138 (166)
T PRK13798 95 EAVMAALAAGNRAYEEKFGFVFLICATG--RSADEMLAALQQRLHN 138 (166)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEeeCC--CCHHHHHHHHHHHhcC
Confidence 45666777777654 5789999999875 5778899899888873
No 372
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=29.50 E-value=3.1e+02 Score=23.10 Aligned_cols=84 Identities=14% Similarity=0.052 Sum_probs=46.7
Q ss_pred cchHHHHHHHHhhcCCCCceEEEEeCCCCC--CHHHHHHHHHHHcCCCCCCCcE-EcchHHHHHHHHh--------cCCC
Q 044580 74 GGSNKALKRLYQHSGDLRIPYIFLTNGGGF--RESKRATELSKLLGVNILPCQV-VQGHSPFKQLFNR--------FENE 142 (269)
Q Consensus 74 PgA~eal~~L~~~~~~~gip~iflTN~~~~--se~~~a~~Ls~~lGi~i~~~qV-i~s~tp~~~L~~~--------~~~k 142 (269)
+++.+..+.|++. |..++.+-=-... +.....+.+ +.+. ..+.| ++|...++.+.+. ..+.
T Consensus 8 ~~~~~l~~~L~~~----G~~~~~~p~~~~~~~~~~~~~~~~-~~~~---~~~~iiftS~~av~~~~~~~~~~~~~~~~~~ 79 (239)
T cd06578 8 PQADELAALLEAL----GAEVLELPLIEIEPLDDAELDAAL-ADLD---EYDWLIFTSPNAVEAFFEALEELGLRALAGL 79 (239)
T ss_pred HHhHHHHHHHHHc----CCcEEEeeeEEEecCChHHHHHHH-HhcC---CCCEEEEECHHHHHHHHHHHHhhCCccccCC
Confidence 4466777888773 6665443211111 122222223 2332 33444 4577666655432 2456
Q ss_pred eEEEEcCchhHHHHhhcCceEecC
Q 044580 143 FIVAVGKGEPAAVMAEYGFKNVLS 166 (269)
Q Consensus 143 ~VlvvG~~~~~~v~~~~Gf~~v~t 166 (269)
+++++|. ...+.|+++||+.+..
T Consensus 80 ~~~avG~-~Ta~~l~~~g~~~~~~ 102 (239)
T cd06578 80 KIAAVGP-KTAEALREAGLTADFV 102 (239)
T ss_pred EEEEECH-HHHHHHHHcCCCceeC
Confidence 7888885 4567789999998764
No 373
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=29.38 E-value=1.6e+02 Score=27.42 Aligned_cols=61 Identities=16% Similarity=0.101 Sum_probs=44.8
Q ss_pred CCccEEEEecC-----------ceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCC
Q 044580 53 RPSFGIAFDID-----------GVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGV 118 (269)
Q Consensus 53 ~~~~a~lFDID-----------GVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi 118 (269)
-+..+|.+|+| |+..-..+-.|...+.++.|++ .|+++++..+-.-......-+++. ..|.
T Consensus 38 iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~----~G~k~~~~v~P~v~~~~~~y~e~~-~~g~ 109 (317)
T cd06598 38 FPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAK----KGVKTIVITEPFVLKNSKNWGEAV-KAGA 109 (317)
T ss_pred CCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHH----cCCcEEEEEcCcccCCchhHHHHH-hCCC
Confidence 36788999975 4565566789999999999999 599999988866444444455563 5565
No 374
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=29.27 E-value=1e+02 Score=30.86 Aligned_cols=86 Identities=19% Similarity=0.171 Sum_probs=48.5
Q ss_pred HHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHc---CCCCCCCcEEcc--hHHH--HHHH-----HhcCCCeE
Q 044580 77 NKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLL---GVNILPCQVVQG--HSPF--KQLF-----NRFENEFI 144 (269)
Q Consensus 77 ~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~l---Gi~i~~~qVi~s--~tp~--~~L~-----~~~~~k~V 144 (269)
..+-+.|+++ .|+|++-.+=-|-.......++|.+.+ |++...+.++.- .... .++. ..+.+|+|
T Consensus 222 ~~~A~~Le~~---fGiP~i~~~PiG~~~T~~fL~~l~~~~~~~g~~~~~e~~i~~e~~~~~~~~~~~r~~d~~~l~Gkrv 298 (511)
T TIGR01278 222 LMAAEYLKEK---FGQPYITTTPIGVNATRRFIREIAALLNQAGADPYYESFILDGLSAVSQAAWFARSIDSQSLTGKRA 298 (511)
T ss_pred HHHHHHHHHH---hCCCcccccccCHHHHHHHHHHHHHHHhhcCCCCcHHHHHHhhhhhhhhHHHHHhhhhhHHhcCCeE
Confidence 3455666664 799996422122233446666776666 877543444421 1111 1111 23568999
Q ss_pred EEEcCchh----HHHHh-hcCceEec
Q 044580 145 VAVGKGEP----AAVMA-EYGFKNVL 165 (269)
Q Consensus 145 lvvG~~~~----~~v~~-~~Gf~~v~ 165 (269)
+++|+... ...+. +.|++.+.
T Consensus 299 ~I~gd~~~a~~l~~~L~~ElG~~vv~ 324 (511)
T TIGR01278 299 FVFGDATHAVGMTKILARELGIHIVG 324 (511)
T ss_pred EEEcCcHHHHHHHHHHHHhCCCEEEe
Confidence 99998643 44575 89999864
No 375
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=28.90 E-value=45 Score=29.05 Aligned_cols=85 Identities=19% Similarity=0.284 Sum_probs=42.4
Q ss_pred ecCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcchHHHHHHHHhcC
Q 044580 61 DIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGHSPFKQLFNRFE 140 (269)
Q Consensus 61 DIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~tp~~~L~~~~~ 140 (269)
.+||+++.+... ...+++.+.. .|+|++++.... .. ..+ . -+..++.-.+...+.+|.++ +
T Consensus 64 ~~dgiii~~~~~---~~~~~~~~~~----~~ipvV~~~~~~--~~----~~~----~-~V~~d~~~~g~~~a~~l~~~-g 124 (275)
T cd06295 64 RADGVILIGQHD---QDPLPERLAE----TGLPFVVWGRPL--PG----QPY----C-YVGSDNVGGGRLATEHLLAR-G 124 (275)
T ss_pred CCCEEEEeCCCC---ChHHHHHHHh----CCCCEEEECCcc--CC----CCC----C-EEEECcHHHHHHHHHHHHHC-C
Confidence 567777654321 1345777776 499999995431 11 001 0 11122221233556666654 4
Q ss_pred CCeEEEEcCch--hHHHHhhcCceEe
Q 044580 141 NEFIVAVGKGE--PAAVMAEYGFKNV 164 (269)
Q Consensus 141 ~k~VlvvG~~~--~~~v~~~~Gf~~v 164 (269)
.++|.+++... .....+..||..+
T Consensus 125 ~~~i~~i~~~~~~~~~~~r~~gf~~~ 150 (275)
T cd06295 125 RRRIAFLGGPQDMPEGEERLEGYREA 150 (275)
T ss_pred CCeEEEEcCCCCcchhHHHHHHHHHH
Confidence 55777776532 2233455565544
No 376
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=28.82 E-value=62 Score=33.57 Aligned_cols=60 Identities=13% Similarity=0.273 Sum_probs=39.1
Q ss_pred HHHHHHHHHHcCCCCCCCcEEcchHHHHHHHHhc---CCCeEEEEcCchhHHHHhh----cCceEecC
Q 044580 106 SKRATELSKLLGVNILPCQVVQGHSPFKQLFNRF---ENEFIVAVGKGEPAAVMAE----YGFKNVLS 166 (269)
Q Consensus 106 ~~~a~~Ls~~lGi~i~~~qVi~s~tp~~~L~~~~---~~k~VlvvG~~~~~~v~~~----~Gf~~v~t 166 (269)
++.++++-+.+|++-+..+||.+|+|++.-.-+- .+.+++|+- |++.+.-+. +|++.+..
T Consensus 508 e~~c~~IL~EFgl~~~~~hIINGHvPVk~k~GEsPIKa~Gkl~VID-GGfskAYqk~TGIAGYTLiyN 574 (640)
T PF06874_consen 508 EEICDKILEEFGLDPERGHIINGHVPVKVKKGESPIKANGKLIVID-GGFSKAYQKTTGIAGYTLIYN 574 (640)
T ss_pred HHHHHHHHHHhCCCCCCCeEECCccccccCCCCCCccCCCEEEEEc-ChhhhhhccccCccceEEEec
Confidence 4566666689999988899999999998432221 245666664 445444333 46776653
No 377
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=28.66 E-value=2.5e+02 Score=20.85 Aligned_cols=48 Identities=15% Similarity=0.242 Sum_probs=26.7
Q ss_pred CceEEEEeCC----CCCCHHHHHHHHHHHcCCCCCCCcEEcchHHHHHHHHh
Q 044580 91 RIPYIFLTNG----GGFRESKRATELSKLLGVNILPCQVVQGHSPFKQLFNR 138 (269)
Q Consensus 91 gip~iflTN~----~~~se~~~a~~Ls~~lGi~i~~~qVi~s~tp~~~L~~~ 138 (269)
..|+++++.+ ++.+-..+++++-+.+|++...-+|........+|.+.
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~ 58 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEY 58 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHH
Confidence 4677777764 35555566666656778765443333333444455444
No 378
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=28.50 E-value=86 Score=26.88 Aligned_cols=33 Identities=15% Similarity=0.403 Sum_probs=21.0
Q ss_pred EecCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeC
Q 044580 60 FDIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTN 99 (269)
Q Consensus 60 FDIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN 99 (269)
-.+||+++.+... ..++++.+.. .++|++++-.
T Consensus 54 ~~~dgiii~~~~~---~~~~l~~~~~----~~ipvV~~~~ 86 (267)
T cd06283 54 YQVDGLIVNPTGN---NKELYQRLAK----NGKPVVLVDR 86 (267)
T ss_pred cCcCEEEEeCCCC---ChHHHHHHhc----CCCCEEEEcC
Confidence 3567777765432 1235777766 4999999854
No 379
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=28.43 E-value=2.3e+02 Score=25.66 Aligned_cols=79 Identities=14% Similarity=0.057 Sum_probs=46.5
Q ss_pred chHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcchHHHHHHHHhcCCCeEEEEcCchhHH
Q 044580 75 GSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGHSPFKQLFNRFENEFIVAVGKGEPAA 154 (269)
Q Consensus 75 gA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~tp~~~L~~~~~~k~VlvvG~~~~~~ 154 (269)
.-.+.++.|.+ .+.+++++. |+..+.+.++.+.+.++ ...+.+.+.+..+..-...-.+++.++.+...
T Consensus 199 ~~~~l~~~l~~----~~~~~vl~~--g~~~e~~~~~~i~~~~~-----~~~l~g~~sL~el~ali~~a~l~I~~DSgp~H 267 (319)
T TIGR02193 199 RWRELARLLLA----RGLQIVLPW--GNDAEKQRAERIAEALP-----GAVVLPKMSLAEVAALLAGADAVVGVDTGLTH 267 (319)
T ss_pred HHHHHHHHHHH----CCCeEEEeC--CCHHHHHHHHHHHhhCC-----CCeecCCCCHHHHHHHHHcCCEEEeCCChHHH
Confidence 44566777765 267776653 33445566777754322 12333445566665544444566666667889
Q ss_pred HHhhcCceEe
Q 044580 155 VMAEYGFKNV 164 (269)
Q Consensus 155 v~~~~Gf~~v 164 (269)
++..+|-..+
T Consensus 268 lAaa~g~P~i 277 (319)
T TIGR02193 268 LAAALDKPTV 277 (319)
T ss_pred HHHHcCCCEE
Confidence 9999985554
No 380
>PRK13946 shikimate kinase; Provisional
Probab=28.08 E-value=1.9e+02 Score=24.40 Aligned_cols=35 Identities=17% Similarity=0.124 Sum_probs=26.6
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHcCCC-CCCCcE
Q 044580 91 RIPYIFLTNGGGFRESKRATELSKLLGVN-ILPCQV 125 (269)
Q Consensus 91 gip~iflTN~~~~se~~~a~~Ls~~lGi~-i~~~qV 125 (269)
+...++|+...|.-....++.|++.||++ ++.|.+
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~ 44 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTE 44 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHH
Confidence 45678888877777888999999999986 344443
No 381
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=27.86 E-value=4.3e+02 Score=23.85 Aligned_cols=55 Identities=16% Similarity=0.144 Sum_probs=36.9
Q ss_pred ecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEc
Q 044580 67 LLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQ 127 (269)
Q Consensus 67 ~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~ 127 (269)
+++-.+-||-.++++.+.++ +.+..++++|++-.. -.-.-| +..|+.-.-++|++
T Consensus 67 l~~ip~~pgm~~~l~~l~~~--~~~~~~~IiSDaNs~---fI~~iL-~~~gl~~~f~~I~T 121 (234)
T PF06888_consen 67 LRSIPIDPGMKELLRFLAKN--QRGFDLIIISDANSF---FIETIL-EHHGLRDCFSEIFT 121 (234)
T ss_pred HHcCCCCccHHHHHHHHHhc--CCCceEEEEeCCcHh---HHHHHH-HhCCCccccceEEe
Confidence 35667889999999999431 259999999987533 233334 67787633345555
No 382
>PRK07283 hypothetical protein; Provisional
Probab=27.80 E-value=1.3e+02 Score=23.29 Aligned_cols=50 Identities=22% Similarity=0.323 Sum_probs=35.5
Q ss_pred ecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCC
Q 044580 67 LLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNI 120 (269)
Q Consensus 67 ~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i 120 (269)
.+.+..+-|..+.++.++.. ....+|++++.+....+...+..+..++++
T Consensus 14 ~raGklv~G~~~v~~aik~g----k~~lVi~A~Das~~~~kk~~~~~~~~~Vp~ 63 (98)
T PRK07283 14 QRAGRIISGEELVVKAIQSG----QAKLVFLANDAGPNLTKKVTDKSNYYQVEV 63 (98)
T ss_pred HHhCCeeEcHHHHHHHHHcC----CccEEEEeCCCCHHHHHHHHHHHHHcCCCE
Confidence 35677888999999999873 678899988876554444444444567764
No 383
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=27.71 E-value=1.6e+02 Score=24.58 Aligned_cols=60 Identities=22% Similarity=0.166 Sum_probs=36.0
Q ss_pred hHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEc-chHHHHHHHHhcCCCeEEEEcC
Q 044580 76 SNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQ-GHSPFKQLFNRFENEFIVAVGK 149 (269)
Q Consensus 76 A~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~-s~tp~~~L~~~~~~k~VlvvG~ 149 (269)
|.+|.+.+.. --.+||-.|+ |-...++.|.+..+ =.|+| |...+..| .++++-.|+++|+
T Consensus 10 A~~A~~~I~~------~~~Ifld~Gt--T~~~la~~L~~~~~-----ltVvTnsl~ia~~l-~~~~~~~vi~~GG 70 (161)
T PF00455_consen 10 ARKAASLIED------GDTIFLDSGT--TTLELAKYLPDKKN-----LTVVTNSLPIANEL-SENPNIEVILLGG 70 (161)
T ss_pred HHHHHHhCCC------CCEEEEECch--HHHHHHHHhhcCCc-----eEEEECCHHHHHHH-HhcCceEEEEeCC
Confidence 4455555543 3568887664 56667777753222 25777 55666655 4455667787776
No 384
>KOG2967 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.28 E-value=1.2e+02 Score=28.74 Aligned_cols=53 Identities=19% Similarity=0.185 Sum_probs=39.6
Q ss_pred CCccEEEEecCceeecCCccccchHHHHHHHHhhcCCCCceE-EEEeCCCCCCH
Q 044580 53 RPSFGIAFDIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPY-IFLTNGGGFRE 105 (269)
Q Consensus 53 ~~~~a~lFDIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~-iflTN~~~~se 105 (269)
....-|++||+=+=+-...-+-....=+.++...|....-|| +.+||-.+...
T Consensus 96 ~s~~rivlD~sfd~lM~~kei~~l~~Qi~~~y~~Nr~a~~Pf~l~~~n~~~~~~ 149 (314)
T KOG2967|consen 96 DSGPRIVLDCSFDELMNEKEIVNLVNQIQRCYSENRRAKHPFHLHFTNFQGDIF 149 (314)
T ss_pred ccCCeEEEeccHHHHHhHHHHHHHHHHHHHHhhhcccCCCCeEEEEecCCcchH
Confidence 456679999987655555666666666777777777888899 88999987544
No 385
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=26.79 E-value=73 Score=24.67 Aligned_cols=29 Identities=17% Similarity=0.015 Sum_probs=22.6
Q ss_pred ccchHHHHHHHHhhcCCCCceEEEEeCCCCCCH
Q 044580 73 IGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRE 105 (269)
Q Consensus 73 iPgA~eal~~L~~~~~~~gip~iflTN~~~~se 105 (269)
-+...++++.+++ .|.+++.+||+...+-
T Consensus 59 t~e~~~~~~~a~~----~g~~vi~iT~~~~s~l 87 (126)
T cd05008 59 TADTLAALRLAKE----KGAKTVAITNVVGSTL 87 (126)
T ss_pred CHHHHHHHHHHHH----cCCeEEEEECCCCChH
Confidence 3567888888888 4999999999875443
No 386
>PF09506 Salt_tol_Pase: Glucosylglycerol-phosphate phosphatase (Salt_tol_Pase); InterPro: IPR012765 Proteins in this family are glucosylglycerol-phosphate phosphatases, with the gene symbol stpA (Salt Tolerance Protein A). A motif characteristic of acid phosphatases is found, but otherwise this family shows little sequence similarity to other phosphatases. This enzyme acts on the glucosylglycerol phosphate, product of glucosylglycerol phosphate synthase and immediate precursor of the osmoprotectant glucosylglycerol.
Probab=26.77 E-value=1e+02 Score=29.84 Aligned_cols=38 Identities=29% Similarity=0.309 Sum_probs=25.8
Q ss_pred EEEEecCceeec------CCccccchHHHHHHHHhhcCCCCceEEEEeCCC
Q 044580 57 GIAFDIDGVVLL------GNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGG 101 (269)
Q Consensus 57 a~lFDIDGVL~~------G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~ 101 (269)
.|+=|+|||-+. ..+.=+.=..|.+.|.. .|.+|||+-
T Consensus 4 LivQDLDGVCm~LVkDPltR~ld~~Yv~A~~~l~~-------~F~VLTnGE 47 (381)
T PF09506_consen 4 LIVQDLDGVCMPLVKDPLTRRLDPDYVRAARQLEG-------HFYVLTNGE 47 (381)
T ss_pred eEEecCCccchhhccCccccccCHHHHHHHHHhcC-------cEEEEeCCc
Confidence 467799999774 12223445666666654 599999985
No 387
>PRK07714 hypothetical protein; Provisional
Probab=26.70 E-value=3e+02 Score=21.15 Aligned_cols=50 Identities=16% Similarity=0.267 Sum_probs=36.8
Q ss_pred ecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCC
Q 044580 67 LLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNI 120 (269)
Q Consensus 67 ~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i 120 (269)
.+++..+-|..+.++.+++. +..+++++++.+....+....+.+..++++
T Consensus 14 ~raGk~v~G~~~v~~al~~g----~~~lViiA~D~s~~~~~ki~~~~~~~~vp~ 63 (100)
T PRK07714 14 NRARKVISGEELVLKEVRSG----KAKLVLLSEDASVNTTKKITDKCTYYNVPM 63 (100)
T ss_pred HHhCCeeecHHHHHHHHHhC----CceEEEEeCCCCHHHHHHHHHHHHhcCCCE
Confidence 45677889999999999873 788899999876555555555544556664
No 388
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=26.68 E-value=62 Score=27.04 Aligned_cols=61 Identities=23% Similarity=0.385 Sum_probs=35.9
Q ss_pred ccEEEEecCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCC
Q 044580 55 SFGIAFDIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGV 118 (269)
Q Consensus 55 ~~a~lFDIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi 118 (269)
..+++|=+|+. ...-++.|.+.|..+.....-.++|++++-|-.......-.+.+.+.+++
T Consensus 82 ~~~iIfVvDss---d~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l 142 (175)
T PF00025_consen 82 ADGIIFVVDSS---DPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGL 142 (175)
T ss_dssp ESEEEEEEETT---GGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTG
T ss_pred cceeEEEEecc---cceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhh
Confidence 34555544443 22357888888888776443358999999997554433333334334443
No 389
>TIGR02399 salt_tol_Pase glucosylglycerol 3-phosphatase. Proteins in this family are glucosylglycerol-phosphate phosphatase, with the gene symbol stpA (Salt Tolerance Protein A). A motif characteristic of acid phosphatases is found, but otherwise this family shows little sequence similarity to other phosphatases. This enzyme acts on the glucosylglycerol phosphate, product of glucosylglycerol phosphate synthase and immediate precursor of the osmoprotectant glucosylglycerol.
Probab=26.64 E-value=99 Score=29.96 Aligned_cols=41 Identities=29% Similarity=0.310 Sum_probs=27.8
Q ss_pred CccEEEEecCceeec------CCccccchHHHHHHHHhhcCCCCceEEEEeCCC
Q 044580 54 PSFGIAFDIDGVVLL------GNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGG 101 (269)
Q Consensus 54 ~~~a~lFDIDGVL~~------G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~ 101 (269)
..-.|+=|+|||-+. ....=+.=..|.+.|.+ .|.+|||+-
T Consensus 7 ~nlLiVQDLDGVCmpLVkDPltR~ld~~Yv~A~~~l~~-------~F~VLTnGE 53 (389)
T TIGR02399 7 ENLLIVQDLDGVCIPLVKDPLTRKLDSKYVFAVKNLEK-------EFYVLTNGE 53 (389)
T ss_pred CCeEEEecCCccchhhccCcccccCCHHHHHHHHHhcC-------cEEEEeCCc
Confidence 455678899999774 12233445666666654 699999985
No 390
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=26.46 E-value=2.3e+02 Score=21.24 Aligned_cols=56 Identities=13% Similarity=0.140 Sum_probs=40.2
Q ss_pred CccEEEEecCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCC
Q 044580 54 PSFGIAFDIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVN 119 (269)
Q Consensus 54 ~~~a~lFDIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~ 119 (269)
+.+.+++|+-||=+-+...+-.-.+..+.+++ .|+.+.+..= .....+.| +..|+.
T Consensus 38 ~~~~vilDls~v~~iDssgi~~L~~~~~~~~~----~g~~l~l~~~-----~~~v~~~l-~~~gl~ 93 (106)
T TIGR02886 38 PIKHLILNLKNVTFMDSSGLGVILGRYKKIKN----EGGEVIVCNV-----SPAVKRLF-ELSGLF 93 (106)
T ss_pred CCCEEEEECCCCcEecchHHHHHHHHHHHHHH----cCCEEEEEeC-----CHHHHHHH-HHhCCc
Confidence 46799999999999988777666677777777 4888776552 23455556 467764
No 391
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=26.46 E-value=2.1e+02 Score=28.98 Aligned_cols=80 Identities=14% Similarity=0.145 Sum_probs=42.9
Q ss_pred HHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcchHHHHHHHHhc-CCCeEEEEcCchhHHH
Q 044580 77 NKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGHSPFKQLFNRF-ENEFIVAVGKGEPAAV 155 (269)
Q Consensus 77 ~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~tp~~~L~~~~-~~k~VlvvG~~~~~~v 155 (269)
..+|+..+. .+.++.+++-...... ++.+...||+++..-. +.+..-+....++. ....-.|||+.-..+.
T Consensus 87 l~al~~a~~----~~~~ia~vg~~~~~~~---~~~~~~ll~~~i~~~~-~~~~~e~~~~~~~l~~~G~~~viG~~~~~~~ 158 (526)
T TIGR02329 87 MQALARARR----IASSIGVVTHQDTPPA---LRRFQAAFNLDIVQRS-YVTEEDARSCVNDLRARGIGAVVGAGLITDL 158 (526)
T ss_pred HHHHHHHHh----cCCcEEEEecCcccHH---HHHHHHHhCCceEEEE-ecCHHHHHHHHHHHHHCCCCEEECChHHHHH
Confidence 344444444 4567777776543332 4456666788774222 22332222222211 2223356788777888
Q ss_pred HhhcCceEe
Q 044580 156 MAEYGFKNV 164 (269)
Q Consensus 156 ~~~~Gf~~v 164 (269)
++++|+..+
T Consensus 159 A~~~gl~~i 167 (526)
T TIGR02329 159 AEQAGLHGV 167 (526)
T ss_pred HHHcCCceE
Confidence 999997775
No 392
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=26.28 E-value=2.7e+02 Score=26.56 Aligned_cols=56 Identities=20% Similarity=0.197 Sum_probs=37.1
Q ss_pred ecCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCC
Q 044580 61 DIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPC 123 (269)
Q Consensus 61 DIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~ 123 (269)
|.+--+.....|+|-+.+.++.|..+ | ++.+++|+-. --++-+.|.+.+|+....+
T Consensus 36 d~wkIvd~s~~plp~v~~i~~~l~~e----g--iv~~~~g~v~-~TekG~E~~e~~gi~~~~~ 91 (354)
T COG1568 36 DFWKIVDYSDLPLPLVASILEILEDE----G--IVKIEEGGVE-LTEKGEELAEELGIKKKYD 91 (354)
T ss_pred chHhhhhhccCCchHHHHHHHHHHhc----C--cEEEecCcEe-ehhhhHHHHHHhCCCcccc
Confidence 55666667788999999999999874 4 6777877532 2234445556677654333
No 393
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=26.24 E-value=33 Score=26.50 Aligned_cols=40 Identities=25% Similarity=0.219 Sum_probs=22.8
Q ss_pred CceeecCCccc--cch---HHHHHHHHhhcCCCC--ceEEEEeCCCCCCHH
Q 044580 63 DGVVLLGNTPI--GGS---NKALKRLYQHSGDLR--IPYIFLTNGGGFRES 106 (269)
Q Consensus 63 DGVL~~G~~~i--PgA---~eal~~L~~~~~~~g--ip~iflTN~~~~se~ 106 (269)
.+|.+.|++|+ ..- .+.++.+++ .+ +.+.+.||+.-..+.
T Consensus 49 ~~v~~~GGEPll~~~~~~l~~~i~~~~~----~~~~~~i~i~TNg~~~~~~ 95 (119)
T PF13394_consen 49 STVVFTGGEPLLYLNPEDLIELIEYLKE----RGPEIKIRIETNGTLPTEE 95 (119)
T ss_dssp -EEEEESSSGGGSTTHHHHHHHHCTSTT---------EEEEEE-STTHHHH
T ss_pred EEEEEECCCCccccCHHHHHHHHHHHHh----hCCCceEEEEeCCeecccc
Confidence 35677889998 333 344555544 35 899999997644343
No 394
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=26.16 E-value=2.6e+02 Score=25.87 Aligned_cols=80 Identities=11% Similarity=0.089 Sum_probs=40.0
Q ss_pred HHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEE-c-chHHHHHHHHhcCCCeEEEEcCchhHH
Q 044580 77 NKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVV-Q-GHSPFKQLFNRFENEFIVAVGKGEPAA 154 (269)
Q Consensus 77 ~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi-~-s~tp~~~L~~~~~~k~VlvvG~~~~~~ 154 (269)
.+.++.|.. .+..++++ |+..+.+.++.+.+.++-+.. ..++ . +.+.+..+..-...-.++|.++.+...
T Consensus 203 a~l~~~l~~----~~~~vvl~---Gg~~e~~~~~~i~~~~~~~~~-~~~~~l~g~~sL~el~ali~~a~l~I~nDTGp~H 274 (348)
T PRK10916 203 AELAQQLID----EGYQVVLF---GSAKDHEAGNEILAALNTEQQ-AWCRNLAGETQLEQAVILIAACKAIVTNDSGLMH 274 (348)
T ss_pred HHHHHHHHH----CCCeEEEE---eCHHhHHHHHHHHHhcccccc-cceeeccCCCCHHHHHHHHHhCCEEEecCChHHH
Confidence 344555543 36665554 234566666666443332211 1222 2 224455544433333455555557788
Q ss_pred HHhhcCceEe
Q 044580 155 VMAEYGFKNV 164 (269)
Q Consensus 155 v~~~~Gf~~v 164 (269)
++...|-..+
T Consensus 275 lAaA~g~P~v 284 (348)
T PRK10916 275 VAAALNRPLV 284 (348)
T ss_pred HHHHhCCCEE
Confidence 8888885553
No 395
>KOG1257 consensus NADP+-dependent malic enzyme [Energy production and conversion]
Probab=26.02 E-value=98 Score=31.60 Aligned_cols=18 Identities=17% Similarity=0.132 Sum_probs=15.6
Q ss_pred CccEEEEecCceeecCCc
Q 044580 54 PSFGIAFDIDGVVLLGNT 71 (269)
Q Consensus 54 ~~~a~lFDIDGVL~~G~~ 71 (269)
..+-+++|.+|.|+.+..
T Consensus 344 ~kkIwlvD~~GLi~~~r~ 361 (582)
T KOG1257|consen 344 RKKIWLVDSKGLITKGRK 361 (582)
T ss_pred hccEEEEecCceeecccc
Confidence 467899999999999885
No 396
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=25.82 E-value=88 Score=28.21 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=13.4
Q ss_pred ccEEEEecCCccchhhHHHHHHHHHhCC
Q 044580 210 VQAAFIVSDSVDWSRDIQVLCDILRTGG 237 (269)
Q Consensus 210 i~AI~v~~Dp~dW~~diQii~DlL~s~G 237 (269)
.+|||..+|..- .-++..|...|
T Consensus 237 p~ai~~~~d~~A-----~g~~~al~~~g 259 (329)
T TIGR01481 237 PTAVFVASDEMA-----AGILNAAMDAG 259 (329)
T ss_pred CCEEEEcCcHHH-----HHHHHHHHHcC
Confidence 389998887521 12455555544
No 397
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=25.78 E-value=1.9e+02 Score=28.09 Aligned_cols=84 Identities=13% Similarity=0.143 Sum_probs=46.0
Q ss_pred HHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCC-CcEEcc-hHHHHHHHH---hcCCCeEEEEcCch
Q 044580 77 NKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILP-CQVVQG-HSPFKQLFN---RFENEFIVAVGKGE 151 (269)
Q Consensus 77 ~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~-~qVi~s-~tp~~~L~~---~~~~k~VlvvG~~~ 151 (269)
..+-+.|.+ .|+|++...=-|-..-....+.|.+.+|.++.. +.++.. ..-+....+ ..+ +++++.|..+
T Consensus 216 ~~~a~~Le~----~GvP~~~~~piG~~~td~~l~~la~~~g~~~~~~e~~~~~e~~~~~~~ld~~~~l~-gkv~v~g~~~ 290 (416)
T cd01980 216 TATIRELEE----AGRPIVSGAPVGADGTAAWLEAVGEALGLDMDQVRKVANEEKAAAKGAIRAFSPIK-GRVLVSGYEG 290 (416)
T ss_pred HHHHHHHHH----cCCceecCCCcCchHHHHHHHHHHHHhCcCchhHHHHHHHHHHHHHHHHhhHHhhC-ceEEEECCCc
Confidence 345556654 499986432223344556677787778887631 333321 111111111 234 4677777643
Q ss_pred h----HHHHhhcCceEec
Q 044580 152 P----AAVMAEYGFKNVL 165 (269)
Q Consensus 152 ~----~~v~~~~Gf~~v~ 165 (269)
. ...+.++|++.+.
T Consensus 291 ~~~~la~~L~elGmevv~ 308 (416)
T cd01980 291 NELLVARLLIESGAEVPY 308 (416)
T ss_pred hhHHHHHHHHHcCCEEEE
Confidence 3 4568899998764
No 398
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=25.68 E-value=3.7e+02 Score=23.87 Aligned_cols=87 Identities=20% Similarity=0.183 Sum_probs=48.9
Q ss_pred cchHHHHHHHHhhc-CCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEE-cchHHHHHHHH----hc----CCCe
Q 044580 74 GGSNKALKRLYQHS-GDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVV-QGHSPFKQLFN----RF----ENEF 143 (269)
Q Consensus 74 PgA~eal~~L~~~~-~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi-~s~tp~~~L~~----~~----~~k~ 143 (269)
+.+.+....|++.. .-.-+|.+=+++... ....+. .+. ..+.|+ +|...++.+.+ .. .+++
T Consensus 11 ~~~~~~~~~l~~~G~~~~~~P~i~~~~~~~-----l~~~l~-~l~---~~d~vvfTS~~av~~~~~~l~~~~~~~~~~~~ 81 (248)
T COG1587 11 EQAEELAALLRKAGAEPLELPLIEIEPLPD-----LEVALE-DLD---SADWVVFTSPNAVRFFFEALKEQGLDALKNKK 81 (248)
T ss_pred hhhHHHHHHHHhCCCcceeecceeeecchh-----HHHHHh-ccc---cCCEEEEECHHHHHHHHHHHHhhcccccccCe
Confidence 66788888888741 011234444444332 122221 221 135555 47655554433 22 1478
Q ss_pred EEEEcCchhHHHHhhcCceEecCcccc
Q 044580 144 IVAVGKGEPAAVMAEYGFKNVLSIDEY 170 (269)
Q Consensus 144 VlvvG~~~~~~v~~~~Gf~~v~t~~d~ 170 (269)
++++|.. ..+.++.+||+.+..++|.
T Consensus 82 i~aVG~~-Ta~~l~~~G~~~~~~p~~~ 107 (248)
T COG1587 82 IAAVGEK-TAEALRKLGIKVDFIPEDG 107 (248)
T ss_pred EEEEcHH-HHHHHHHhCCCCCcCCCcc
Confidence 9999864 5677999999998877753
No 399
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=25.60 E-value=1.6e+02 Score=22.02 Aligned_cols=56 Identities=13% Similarity=0.205 Sum_probs=38.3
Q ss_pred CccEEEEecCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCC
Q 044580 54 PSFGIAFDIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVN 119 (269)
Q Consensus 54 ~~~a~lFDIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~ 119 (269)
....+++|+.||=+-+...+--=.++.+.+++ .|..+.++.-++ ...+-| +.+|+.
T Consensus 42 ~~~~vvidls~v~~iDssgl~~L~~~~~~~~~----~~~~~~l~~~~~-----~~~~~l-~~~~l~ 97 (108)
T TIGR00377 42 GPRPIVLDLEDLEFMDSSGLGVLLGRYKQVRR----VGGQLVLVSVSP-----RVARLL-DITGLL 97 (108)
T ss_pred CCCeEEEECCCCeEEccccHHHHHHHHHHHHh----cCCEEEEEeCCH-----HHHHHH-HHhChh
Confidence 67889999999999888666656666666666 478776665332 344445 466764
No 400
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=25.58 E-value=70 Score=25.21 Aligned_cols=40 Identities=33% Similarity=0.434 Sum_probs=23.9
Q ss_pred CceeecCCcccc-----chHHHHHHHHhhcCCCCceEEEEeCCCCCCH
Q 044580 63 DGVVLLGNTPIG-----GSNKALKRLYQHSGDLRIPYIFLTNGGGFRE 105 (269)
Q Consensus 63 DGVL~~G~~~iP-----gA~eal~~L~~~~~~~gip~iflTN~~~~se 105 (269)
.+|.+.|++|+. ...+.++.+++. ...+.+++||+....+
T Consensus 54 ~~i~l~GGEPll~~~~~~l~~i~~~~k~~---~~~~~~~~tng~~~~~ 98 (139)
T PF13353_consen 54 KGIVLTGGEPLLHENYDELLEILKYIKEK---FPKKIIILTNGYTLDE 98 (139)
T ss_dssp CEEEEECSTGGGHHSHHHHHHHHHHHHHT---T-SEEEEEETT--HHH
T ss_pred eEEEEcCCCeeeeccHhHHHHHHHHHHHh---CCCCeEEEECCCchhH
Confidence 566667777655 455556666663 2347899999875544
No 401
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=25.51 E-value=3e+02 Score=20.76 Aligned_cols=33 Identities=21% Similarity=0.290 Sum_probs=20.4
Q ss_pred hHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCC
Q 044580 76 SNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGV 118 (269)
Q Consensus 76 A~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi 118 (269)
+.+.++.|.+. +++++++..+. +.++++. ..|+
T Consensus 10 ~~~i~~~L~~~----~~~vvvid~d~-----~~~~~~~-~~~~ 42 (116)
T PF02254_consen 10 GREIAEQLKEG----GIDVVVIDRDP-----ERVEELR-EEGV 42 (116)
T ss_dssp HHHHHHHHHHT----TSEEEEEESSH-----HHHHHHH-HTTS
T ss_pred HHHHHHHHHhC----CCEEEEEECCc-----HHHHHHH-hccc
Confidence 55666777763 67888888753 4455553 4554
No 402
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=25.42 E-value=1.6e+02 Score=23.34 Aligned_cols=47 Identities=21% Similarity=0.223 Sum_probs=38.6
Q ss_pred CccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCC
Q 044580 70 NTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNIL 121 (269)
Q Consensus 70 ~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~ 121 (269)
+..=||..||-+.|.. ++|-.+|-+....+.-.....|.+.-|+++.
T Consensus 38 N~IKPGIgEaTRvLLR-----RvP~~vLVr~~~~pd~~Hl~~LA~ekgVpVe 84 (100)
T PF15608_consen 38 NLIKPGIGEATRVLLR-----RVPWKVLVRDPDDPDLAHLLLLAEEKGVPVE 84 (100)
T ss_pred ccccCChhHHHHHHHh-----cCCCEEEECCCCCccHHHHHHHHHHcCCcEE
Confidence 4566999999999997 8999888887777777777888888888864
No 403
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=25.40 E-value=65 Score=29.71 Aligned_cols=42 Identities=24% Similarity=0.374 Sum_probs=26.3
Q ss_pred EecCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCH
Q 044580 60 FDIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRE 105 (269)
Q Consensus 60 FDIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se 105 (269)
+.+||+++.=-.-......++..+.. .++|+.|+|||.+.++
T Consensus 211 ~~~~~~I~TKlDet~~~G~~l~~~~~----~~~Pi~~it~Gq~vp~ 252 (270)
T PRK06731 211 IHIDGIVFTKFDETASSGELLKIPAV----SSAPIVLMTDGQDVKK 252 (270)
T ss_pred CCCCEEEEEeecCCCCccHHHHHHHH----HCcCEEEEeCCCCCCc
Confidence 45666665422222233345555555 4999999999987775
No 404
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=25.39 E-value=98 Score=26.67 Aligned_cols=25 Identities=20% Similarity=0.101 Sum_probs=15.6
Q ss_pred CCccEEEEecCCccchhhHHHHHHHHHhCC
Q 044580 208 QRVQAAFIVSDSVDWSRDIQVLCDILRTGG 237 (269)
Q Consensus 208 ~~i~AI~v~~Dp~dW~~diQii~DlL~s~G 237 (269)
..++||+..+|..- .-+++.|...|
T Consensus 175 ~~~~aii~~~~~~a-----~~~~~~l~~~g 199 (265)
T cd06290 175 PDFTAIFAANDQTA-----YGARLALYRRG 199 (265)
T ss_pred CCCCEEEEcCcHHH-----HHHHHHHHHcC
Confidence 45889998877531 22556666644
No 405
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=25.36 E-value=96 Score=26.84 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=16.4
Q ss_pred CCccEEEEecCCccchhhHHHHHHHHHhCC
Q 044580 208 QRVQAAFIVSDSVDWSRDIQVLCDILRTGG 237 (269)
Q Consensus 208 ~~i~AI~v~~Dp~dW~~diQii~DlL~s~G 237 (269)
+.++|||..+|. -..-++..|...|
T Consensus 176 ~~~~ai~~~~d~-----~a~g~~~~l~~~g 200 (268)
T cd06270 176 APFTAVFCANDE-----MAAGAISALREHG 200 (268)
T ss_pred CCCCEEEEcCcH-----HHHHHHHHHHHcC
Confidence 457899988765 2244677777744
No 406
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=25.09 E-value=4.7e+02 Score=26.09 Aligned_cols=74 Identities=23% Similarity=0.318 Sum_probs=47.7
Q ss_pred HhHHHHHHHHhhccccccccccccccccccccccccccCCCCccEEEEecCceeecCCccccchHHHHHHHHhhcCCCCc
Q 044580 13 LSILAVAKALQSQNKKKLSPLLFSFSTASRSFSQLSSQSQRPSFGIAFDIDGVVLLGNTPIGGSNKALKRLYQHSGDLRI 92 (269)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~lFDIDGVL~~G~~~iPgA~eal~~L~~~~~~~gi 92 (269)
|..+++|++.- .+...+...+.+|.- .+.-.=++-+.|||.|-++.--..+..++..|.. ++.
T Consensus 282 lAa~a~a~~~g-v~~e~i~~~L~~F~g------------l~HR~e~v~~~~gv~f~NDSKATN~~At~~AL~~----~~~ 344 (448)
T COG0771 282 LAALALARALG-VPPEAILEALSSFTG------------LPHRLEFVGEKDGVLFINDSKATNVDATLAALSG----FDG 344 (448)
T ss_pred HHHHHHHHHcC-CCHHHHHHHHHhCCC------------CCcceEEEEecCCEEEecCCCCCCHHHHHHHHHc----CCC
Confidence 44556665544 333334455444431 1223447889999999988877777778888887 567
Q ss_pred eEEEEeCCCCC
Q 044580 93 PYIFLTNGGGF 103 (269)
Q Consensus 93 p~iflTN~~~~ 103 (269)
|+++|-.|-.+
T Consensus 345 ~v~lI~GG~~K 355 (448)
T COG0771 345 PVILIAGGDDK 355 (448)
T ss_pred CEEEEECCCCC
Confidence 89999866433
No 407
>PRK00802 3-methyladenine DNA glycosylase; Reviewed
Probab=25.04 E-value=39 Score=29.68 Aligned_cols=45 Identities=29% Similarity=0.346 Sum_probs=29.6
Q ss_pred CceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCC
Q 044580 63 DGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNI 120 (269)
Q Consensus 63 DGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i 120 (269)
.|||+|+-+|+.|-.... .-+. .+.+..-||||.|+ |.+.|||+.
T Consensus 93 ~aVLIRA~ep~~g~~~m~-~~R~----~~~~~~~L~nGPGk--------L~~AlgI~~ 137 (188)
T PRK00802 93 AAVLIRALEPLEGIALMR-RRRG----GKRPEKNLCNGPGK--------LCKALGITL 137 (188)
T ss_pred cEEEEEeccccccHHHHH-Hhcc----cCCcccccccCHHH--------HHHHhCCCH
Confidence 459999999998755432 2121 14455779999754 557788864
No 408
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=24.99 E-value=1.3e+02 Score=26.05 Aligned_cols=72 Identities=13% Similarity=0.136 Sum_probs=38.5
Q ss_pred ecCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcchHHHHHHHHhc-
Q 044580 61 DIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGHSPFKQLFNRF- 139 (269)
Q Consensus 61 DIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~tp~~~L~~~~- 139 (269)
.+||+++..... ....+.++.+.+ .|+|++++.+..... .+. .+..++.-.+...+++|.+..
T Consensus 55 ~vdgii~~~~~~-~~~~~~i~~~~~----~~ipvV~~~~~~~~~------~~~-----~V~~d~~~~g~~~~~~l~~~~~ 118 (273)
T cd06305 55 KVDAIIIQHGRA-EVLKPWVKRALD----AGIPVVAFDVDSDNP------KVN-----NTTQDDYSLARLSLDQLVKDLG 118 (273)
T ss_pred CCCEEEEecCCh-hhhHHHHHHHHH----cCCCEEEecCCCCCC------ccc-----eeeechHHHHHHHHHHHHHHhC
Confidence 568887764321 234566777777 499999886532110 110 121222222446777887753
Q ss_pred CCCeEEEEc
Q 044580 140 ENEFIVAVG 148 (269)
Q Consensus 140 ~~k~VlvvG 148 (269)
+.++|.+++
T Consensus 119 g~~~i~~i~ 127 (273)
T cd06305 119 GKGNVGYVN 127 (273)
T ss_pred CCCCEEEEE
Confidence 334666664
No 409
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=24.93 E-value=4.1e+02 Score=27.49 Aligned_cols=89 Identities=16% Similarity=0.220 Sum_probs=59.0
Q ss_pred cCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEc-ch------HHHHHHHHhcC
Q 044580 68 LGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQ-GH------SPFKQLFNRFE 140 (269)
Q Consensus 68 ~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~-s~------tp~~~L~~~~~ 140 (269)
.|..|.+.-.+.+...-. -+.+++|.+||.=-.+.++++. .. .|..|+. +| ..-..|..+++
T Consensus 232 LgR~pV~~d~~~i~~~~~------gK~vLVTGagGSiGsel~~qil-~~----~p~~i~l~~~~E~~~~~i~~el~~~~~ 300 (588)
T COG1086 232 LGRPPVALDTELIGAMLT------GKTVLVTGGGGSIGSELCRQIL-KF----NPKEIILFSRDEYKLYLIDMELREKFP 300 (588)
T ss_pred hCCCCCCCCHHHHHhHcC------CCEEEEeCCCCcHHHHHHHHHH-hc----CCCEEEEecCchHHHHHHHHHHHhhCC
Confidence 466777777776665543 4679999999999999999986 33 5667776 54 23334555554
Q ss_pred -CCeEEEEcCchh----HHHHhhcCceEecCc
Q 044580 141 -NEFIVAVGKGEP----AAVMAEYGFKNVLSI 167 (269)
Q Consensus 141 -~k~VlvvG~~~~----~~v~~~~Gf~~v~t~ 167 (269)
.+...++|+-.. ..+++.+.-..|.+.
T Consensus 301 ~~~~~~~igdVrD~~~~~~~~~~~kvd~VfHA 332 (588)
T COG1086 301 ELKLRFYIGDVRDRDRVERAMEGHKVDIVFHA 332 (588)
T ss_pred CcceEEEecccccHHHHHHHHhcCCCceEEEh
Confidence 567788998443 345666665555543
No 410
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=24.57 E-value=98 Score=26.70 Aligned_cols=31 Identities=16% Similarity=0.357 Sum_probs=18.3
Q ss_pred cCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeC
Q 044580 62 IDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTN 99 (269)
Q Consensus 62 IDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN 99 (269)
+||+++.+... +.. .++.+.+ .++|++++..
T Consensus 56 vdgiii~~~~~-~~~--~~~~~~~----~~ipvV~~~~ 86 (264)
T cd06274 56 VDALIVAGSLP-PDD--PYYLCQK----AGLPVVALDR 86 (264)
T ss_pred CCEEEEcCCCC-chH--HHHHHHh----cCCCEEEecC
Confidence 46666654322 222 2666665 4899998843
No 411
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=24.36 E-value=2.3e+02 Score=28.50 Aligned_cols=63 Identities=19% Similarity=0.371 Sum_probs=42.1
Q ss_pred CCccEEEEecCceeec--CCccccchHHHHHHHHhhcCCCCceEEEEeCCCC-CCHHH--HHHHHHHHcCCC
Q 044580 53 RPSFGIAFDIDGVVLL--GNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGG-FRESK--RATELSKLLGVN 119 (269)
Q Consensus 53 ~~~~a~lFDIDGVL~~--G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~-~se~~--~a~~Ls~~lGi~ 119 (269)
+..-|++.=-||.+.. .....+.-.+.++.|++ .++||+++-|... .+++. .++.|.+.+|++
T Consensus 144 hstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~----~~kPfiivlN~~dp~~~et~~l~~~l~eky~vp 211 (492)
T TIGR02836 144 HSTIGVVVTTDGTITDIPREDYVEAEERVIEELKE----LNKPFIILLNSTHPYHPETEALRQELEEKYDVP 211 (492)
T ss_pred cCcEEEEEEcCCCccccccccchHHHHHHHHHHHh----cCCCEEEEEECcCCCCchhHHHHHHHHHHhCCc
Confidence 3456777766886543 23456666778999998 6999999999876 22332 245666667765
No 412
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=24.31 E-value=1.1e+02 Score=26.41 Aligned_cols=32 Identities=31% Similarity=0.481 Sum_probs=20.7
Q ss_pred ecCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeC
Q 044580 61 DIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTN 99 (269)
Q Consensus 61 DIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN 99 (269)
.+||+++-+... ....++.+.+ .++|++++-+
T Consensus 55 ~vdgiii~~~~~---~~~~~~~l~~----~~iPvv~~~~ 86 (268)
T cd06273 55 GVDGLALIGLDH---SPALLDLLAR----RGVPYVATWN 86 (268)
T ss_pred CCCEEEEeCCCC---CHHHHHHHHh----CCCCEEEEcC
Confidence 467777654432 3456677766 4999999854
No 413
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=24.23 E-value=1.2e+02 Score=33.29 Aligned_cols=47 Identities=17% Similarity=0.308 Sum_probs=37.2
Q ss_pred ceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCC
Q 044580 64 GVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGV 118 (269)
Q Consensus 64 GVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi 118 (269)
|-+.--+.+=|++.++++.|++ .|+.++++|.....|....| +++|+
T Consensus 649 Gli~~~d~lr~~~~~~I~~l~~----agi~v~miTGD~~~TA~~iA----~~~gi 695 (1054)
T TIGR01657 649 GFIVFENPLKPDTKEVIKELKR----ASIRTVMITGDNPLTAVHVA----RECGI 695 (1054)
T ss_pred EEEEEecCCCccHHHHHHHHHH----CCCeEEEECCCCHHHHHHHH----HHcCC
Confidence 6666677788999999999999 59999999987655554444 56677
No 414
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=24.14 E-value=3.9e+02 Score=21.68 Aligned_cols=69 Identities=14% Similarity=0.033 Sum_probs=37.1
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcc-----h-HHHHH----HHHhcCCCeEEEEcC---chhHHHHhhcC
Q 044580 94 YIFLTNGGGFRESKRATELSKLLGVNILPCQVVQG-----H-SPFKQ----LFNRFENEFIVAVGK---GEPAAVMAEYG 160 (269)
Q Consensus 94 ~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s-----~-tp~~~----L~~~~~~k~VlvvG~---~~~~~v~~~~G 160 (269)
|-++.++.-.+.++.++... +-+. +-|..| | ..+.. |.++..+...+++|. ....+.++++|
T Consensus 31 feVi~lg~~~s~e~~v~aa~-e~~a----dii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~G 105 (132)
T TIGR00640 31 FDVDVGPLFQTPEEIARQAV-EADV----HVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMG 105 (132)
T ss_pred cEEEECCCCCCHHHHHHHHH-HcCC----CEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCC
Confidence 44455556678888887774 3333 334433 2 12222 333333233345553 23456799999
Q ss_pred ceEecCc
Q 044580 161 FKNVLSI 167 (269)
Q Consensus 161 f~~v~t~ 167 (269)
+.-++++
T Consensus 106 vd~~~~~ 112 (132)
T TIGR00640 106 VAEIFGP 112 (132)
T ss_pred CCEEECC
Confidence 8887654
No 415
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=23.90 E-value=4e+02 Score=21.73 Aligned_cols=71 Identities=11% Similarity=0.039 Sum_probs=39.8
Q ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcc-----h-----HHHHHHHHh-cCCCeEEEEcCc--------
Q 044580 90 LRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQG-----H-----SPFKQLFNR-FENEFIVAVGKG-------- 150 (269)
Q Consensus 90 ~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s-----~-----tp~~~L~~~-~~~k~VlvvG~~-------- 150 (269)
.|..++++=- ..+.++.++... ..+ ++-|..| + ..+..|.+. ..+.+|++.|..
T Consensus 30 ~G~eVi~LG~--~vp~e~i~~~a~-~~~----~d~V~lS~~~~~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~ 102 (137)
T PRK02261 30 AGFEVINLGV--MTSQEEFIDAAI-ETD----ADAILVSSLYGHGEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFE 102 (137)
T ss_pred CCCEEEECCC--CCCHHHHHHHHH-HcC----CCEEEEcCccccCHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChH
Confidence 5888877753 367777777663 433 3344433 1 222334333 234455655543
Q ss_pred hhHHHHhhcCceEecCc
Q 044580 151 EPAAVMAEYGFKNVLSI 167 (269)
Q Consensus 151 ~~~~v~~~~Gf~~v~t~ 167 (269)
...+.++++||..+.++
T Consensus 103 ~~~~~l~~~G~~~vf~~ 119 (137)
T PRK02261 103 EVEKKFKEMGFDRVFPP 119 (137)
T ss_pred HHHHHHHHcCCCEEECc
Confidence 12357999999888654
No 416
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=23.89 E-value=1.6e+02 Score=26.64 Aligned_cols=44 Identities=20% Similarity=0.050 Sum_probs=31.7
Q ss_pred ecCceeecCCcccc--ch-HHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHH
Q 044580 61 DIDGVVLLGNTPIG--GS-NKALKRLYQHSGDLRIPYIFLTNGGGFRESKRA 109 (269)
Q Consensus 61 DIDGVL~~G~~~iP--gA-~eal~~L~~~~~~~gip~iflTN~~~~se~~~a 109 (269)
...||.+-|++|+. .. .+.++.+++ .|+++.+.|||.. +.+...
T Consensus 125 ~~~~V~~sGGEPll~~~~l~~l~~~~k~----~g~~~~i~TnG~~-~~~~~~ 171 (295)
T TIGR02494 125 SGGGVTLSGGEPLLQPEFALALLQACHE----RGIHTAVETSGFT-PWETIE 171 (295)
T ss_pred CCCcEEeeCcchhchHHHHHHHHHHHHH----cCCcEeeeCCCCC-CHHHHH
Confidence 34689999999874 42 467888877 4899999999863 443333
No 417
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=23.80 E-value=4.1e+02 Score=24.19 Aligned_cols=105 Identities=10% Similarity=0.159 Sum_probs=63.1
Q ss_pred cchHHHHHHHHhhc-CCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEc-c-------hHHHHHHHHhcCCCeE
Q 044580 74 GGSNKALKRLYQHS-GDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQ-G-------HSPFKQLFNRFENEFI 144 (269)
Q Consensus 74 PgA~eal~~L~~~~-~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~-s-------~tp~~~L~~~~~~k~V 144 (269)
-|....++.|.++- .+.+|.+.+++.+....++..-.-.. .+=-+..|+-|+. | -+.++.++++ .+..+
T Consensus 13 iGts~v~dlllDErAdRedi~vrVvgsgaKM~Pe~veaav~-~~~e~~~pDfvi~isPNpaaPGP~kARE~l~~-s~~Pa 90 (277)
T COG1927 13 IGTSPVVDLLLDERADREDIEVRVVGSGAKMDPECVEAAVT-EMLEEFNPDFVIYISPNPAAPGPKKAREILSD-SDVPA 90 (277)
T ss_pred cchHHHHHHHHHhhcccCCceEEEeccccccChHHHHHHHH-HHHHhcCCCEEEEeCCCCCCCCchHHHHHHhh-cCCCE
Confidence 35566677776643 56799999999888777663222221 1111344555554 2 2556666654 35678
Q ss_pred EEEcCch---hHHHHhhcCceEecCccc--cccccccCCCC
Q 044580 145 VAVGKGE---PAAVMAEYGFKNVLSIDE--YASYFDGIDPL 180 (269)
Q Consensus 145 lvvG~~~---~~~v~~~~Gf~~v~t~~d--~~~~~p~ldp~ 180 (269)
.++|+.. .++.+++.||-.++-.-| +.+-..++||.
T Consensus 91 iiigDaPg~~vkdeleeqGlGYIivk~DpmiGArREFLDPv 131 (277)
T COG1927 91 IIIGDAPGLKVKDELEEQGLGYIIVKADPMIGARREFLDPV 131 (277)
T ss_pred EEecCCccchhHHHHHhcCCeEEEecCCcccchhhhhcCHH
Confidence 8899853 357899888877654333 34445567763
No 418
>KOG1503 consensus Phosphoribosylpyrophosphate synthetase-associated protein [Amino acid transport and metabolism; Nucleotide transport and metabolism]
Probab=23.63 E-value=82 Score=29.16 Aligned_cols=55 Identities=11% Similarity=0.206 Sum_probs=36.8
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEc-c-hHHHHHHHHhcCCCeEEEEcCc
Q 044580 93 PYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQ-G-HSPFKQLFNRFENEFIVAVGKG 150 (269)
Q Consensus 93 p~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~-s-~tp~~~L~~~~~~k~VlvvG~~ 150 (269)
-++++|.|+ ..+.+++.+++||++.....|++ + ....-.+.+...+|-||++-++
T Consensus 8 g~vl~s~ns---~~elak~vaerlgi~~g~~~vy~~tnret~vei~~svrgkdvfiiqt~ 64 (354)
T KOG1503|consen 8 GMVLFSGNS---HPELAKMVAERLGIELGKATVYQKTNRETRVEIKESVRGKDVFIIQTG 64 (354)
T ss_pred CeEEEcCCC---CHHHHHHHHHHhcccccceEEEecCCCceEEEhhhhccCceEEEEEec
Confidence 356777665 33889999999999988778876 2 2222235555667777776543
No 419
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=23.35 E-value=1.1e+02 Score=24.11 Aligned_cols=28 Identities=18% Similarity=-0.065 Sum_probs=22.6
Q ss_pred ccchHHHHHHHHhhcCCCCceEEEEeCCCCCC
Q 044580 73 IGGSNKALKRLYQHSGDLRIPYIFLTNGGGFR 104 (269)
Q Consensus 73 iPgA~eal~~L~~~~~~~gip~iflTN~~~~s 104 (269)
-+...++++.+++ .|.|++.+||+...+
T Consensus 60 t~~~~~~~~~a~~----~g~~vi~iT~~~~s~ 87 (120)
T cd05710 60 TKETVAAAKFAKE----KGATVIGLTDDEDSP 87 (120)
T ss_pred ChHHHHHHHHHHH----cCCeEEEEECCCCCc
Confidence 4677888888888 499999999987554
No 420
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=23.34 E-value=2e+02 Score=28.45 Aligned_cols=84 Identities=18% Similarity=0.193 Sum_probs=48.0
Q ss_pred HHHHHHHHhhcCCCCceEEEEeCC-CCCCHHHHHHHHHHHcCCCCCCCcEEcch-HHHHHHHH----hcCCCeEEEEcCc
Q 044580 77 NKALKRLYQHSGDLRIPYIFLTNG-GGFRESKRATELSKLLGVNILPCQVVQGH-SPFKQLFN----RFENEFIVAVGKG 150 (269)
Q Consensus 77 ~eal~~L~~~~~~~gip~iflTN~-~~~se~~~a~~Ls~~lGi~i~~~qVi~s~-tp~~~L~~----~~~~k~VlvvG~~ 150 (269)
..+-+.|.++ .|+|++.+..- |-....+..+.|.+.+|.+++ +.+..-. .....+.+ ...+|++.+.|++
T Consensus 246 ~~~A~~Lee~---~giP~~~~~~piGi~~T~~fl~~l~~~~g~~~~-e~i~~er~~~~~~~~d~~~~~l~Gkrvai~~~~ 321 (461)
T TIGR02931 246 MKAADYLQKK---FDVPAIIGPTPIGIRNTDTFLQNLKKMTGKPIP-ESLVKERGIAIDAIADLTHMFLADKRVAIYGNP 321 (461)
T ss_pred HHHHHHHHHH---hCCCeeccCCCcchHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHhhhhHHhCCCeEEEEeCH
Confidence 3445556653 79998866322 223334567777777887754 3333211 12222222 3478899888875
Q ss_pred hh----HHHHhhcCceEe
Q 044580 151 EP----AAVMAEYGFKNV 164 (269)
Q Consensus 151 ~~----~~v~~~~Gf~~v 164 (269)
.. ...+.+.|.+.+
T Consensus 322 ~~~~~l~~~l~elGm~~~ 339 (461)
T TIGR02931 322 DLVIGLAEFCLDLEMKPV 339 (461)
T ss_pred HHHHHHHHHHHHCCCEEE
Confidence 32 355678998775
No 421
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=23.09 E-value=2.6e+02 Score=26.51 Aligned_cols=68 Identities=15% Similarity=0.244 Sum_probs=37.1
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHcCCCCC-CCcEEc--chHHHHH---HHHhc---CCCeEEEEcCchhHHHHhhcC
Q 044580 91 RIPYIFLTNGGGFRESKRATELSKLLGVNIL-PCQVVQ--GHSPFKQ---LFNRF---ENEFIVAVGKGEPAAVMAEYG 160 (269)
Q Consensus 91 gip~iflTN~~~~se~~~a~~Ls~~lGi~i~-~~qVi~--s~tp~~~---L~~~~---~~k~VlvvG~~~~~~v~~~~G 160 (269)
+.+++++|.. +.......+.| +..|++.. -++|-. +..-+.. +.+++ +-..|+.+|++...+.++..+
T Consensus 25 ~~~~lvvtd~-~~~~~~v~~~L-~~~g~~~~~f~~v~~nPt~~~v~~~~~~~~~~~~~~~D~IIaiGGGS~iD~AKaia 101 (347)
T cd08184 25 KDPAVFFVDD-VFQGKDLISRL-PVESEDMIIWVDATEEPKTDQIDALTAQVKSFDGKLPCAIVGIGGGSTLDVAKAVS 101 (347)
T ss_pred CCeEEEEECc-chhhhHHHHHH-HhcCCcEEEEcCCCCCcCHHHHHHHHHHHHhhCCCCCCEEEEeCCcHHHHHHHHHH
Confidence 3678888954 44445667777 35566532 122211 1122222 23333 446788899988777665544
No 422
>TIGR02383 Hfq RNA chaperone Hfq. This model represents the RNA-binding pleiotropic regulator Hfq, a small, Sm-like protein of bacteria. It helps pair regulatory noncoding RNAs with complementary mRNA target regions. It enhances the elongation of poly(A) tails on mRNA. It appears also to protect RNase E recognition sites (A/U-rich sequences with adjacent stem-loop structures) from cleavage. Being pleiotropic, it differs in some of its activities in different species. Hfq binds the non-coding regulatory RNA DsrA (see Rfam RF00014) in the few species known to have it: Escherichia coli, Shigella flexneri, Salmonella spp. In Azorhizobium caulinodans, an hfq mutant is unable to express nifA, and Hfq is called NrfA, for nif regulatory factor (see PubMed:8197116). The name hfq reflects phenomenology as a host factor for phage Q-beta RNA replication.
Probab=22.77 E-value=99 Score=22.30 Aligned_cols=20 Identities=45% Similarity=0.738 Sum_probs=15.8
Q ss_pred HHHHHHHhhcCCCCceE-EEEeCCC
Q 044580 78 KALKRLYQHSGDLRIPY-IFLTNGG 101 (269)
Q Consensus 78 eal~~L~~~~~~~gip~-iflTN~~ 101 (269)
.+++.++++ ++|+ +||.||-
T Consensus 6 ~fln~~r~~----~~~Vti~L~nG~ 26 (61)
T TIGR02383 6 QFLNTLRKE----RIPVTVFLVNGV 26 (61)
T ss_pred HHHHHHHHc----CCcEEEEEeCCc
Confidence 567888884 8888 8999984
No 423
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=22.73 E-value=1.3e+02 Score=23.12 Aligned_cols=40 Identities=15% Similarity=0.125 Sum_probs=29.0
Q ss_pred CccEEEEecCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCC
Q 044580 54 PSFGIAFDIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFR 104 (269)
Q Consensus 54 ~~~a~lFDIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~s 104 (269)
..-.|+|...| .-..-.+.++.+++ .|.|++.+|++++.+
T Consensus 54 ~d~vi~is~sg-------~~~~~~~~~~~ak~----~g~~vi~iT~~~~~~ 93 (131)
T PF01380_consen 54 DDLVIIISYSG-------ETRELIELLRFAKE----RGAPVILITSNSESP 93 (131)
T ss_dssp TEEEEEEESSS-------TTHHHHHHHHHHHH----TTSEEEEEESSTTSH
T ss_pred cceeEeeeccc-------cchhhhhhhHHHHh----cCCeEEEEeCCCCCc
Confidence 34566777655 23677888888887 599999999887543
No 424
>TIGR00567 3mg DNA-3-methyladenine glycosylase (3mg). This families are based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). All proteins in this family for which the function is known are involved in the base excision repair of alkylation damage to DNA. The exact specificty of the type of alkylation damage repaired by each of these varies somewhat between species. Substrates include 3-methyl adenine, 7-methyl-guanaine, and 3-methyl-guanine.
Probab=22.72 E-value=51 Score=29.08 Aligned_cols=42 Identities=26% Similarity=0.355 Sum_probs=27.3
Q ss_pred ceeecCCccccchHHHHHHHHhhcCCCCceE--EEEeCCCCCCHHHHHHHHHHHcCCCC
Q 044580 64 GVVLLGNTPIGGSNKALKRLYQHSGDLRIPY--IFLTNGGGFRESKRATELSKLLGVNI 120 (269)
Q Consensus 64 GVL~~G~~~iPgA~eal~~L~~~~~~~gip~--iflTN~~~~se~~~a~~Ls~~lGi~i 120 (269)
|||+|+-+|+.|.... .++ .+.+. .-||||.|+ |.+.|||+.
T Consensus 95 aVLIRA~ep~~G~~~m----~~~---R~~~~~~~~L~nGPGk--------L~~ALgI~~ 138 (192)
T TIGR00567 95 AVLIRALEPLEGLELM----RER---RGRSLKDRELTNGPGK--------LCQALGITM 138 (192)
T ss_pred EEEEEeccccCchHHH----HHh---cCCCccccccccCHHH--------HHHHhCCCH
Confidence 3999999999885543 221 13322 458999754 557788863
No 425
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=22.63 E-value=1.6e+02 Score=28.89 Aligned_cols=86 Identities=15% Similarity=0.229 Sum_probs=47.6
Q ss_pred HHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCC-CC--CCcEEcc-h----HHHHHHHHhcCCCeEEEEc
Q 044580 77 NKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVN-IL--PCQVVQG-H----SPFKQLFNRFENEFIVAVG 148 (269)
Q Consensus 77 ~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~-i~--~~qVi~s-~----tp~~~L~~~~~~k~VlvvG 148 (269)
..+-+.|.++ .|+|++-.+=-|-..-.+..+.|.+.+|.+ +. .++++.. . ..+......+.+++|.+.+
T Consensus 257 ~~~a~~L~e~---~GiP~~~~~~~G~~~T~~~L~~Ia~~lg~~~~~~~~~~~i~~e~~~~~~~l~~~~~~L~Gkrv~i~~ 333 (456)
T TIGR01283 257 INLARKMEEK---YGIPYFEGSFYGIEDTSKALRDIADLFGDEELLKRTEELIAREEAKIRPALEPYRERLKGKKAAIYT 333 (456)
T ss_pred HHHHHHHHHH---cCCCEEecCCCcHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEc
Confidence 4566667664 799998632122233445566666667743 10 2233321 1 2222333456788887765
Q ss_pred Cch----hHHHHhhcCceEec
Q 044580 149 KGE----PAAVMAEYGFKNVL 165 (269)
Q Consensus 149 ~~~----~~~v~~~~Gf~~v~ 165 (269)
++. ....+.++|++.+.
T Consensus 334 g~~~~~~l~~~l~elGmevv~ 354 (456)
T TIGR01283 334 GGVKSWSLVSALQDLGMEVVA 354 (456)
T ss_pred CCchHHHHHHHHHHCCCEEEE
Confidence 532 34568899999765
No 426
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=22.54 E-value=2.8e+02 Score=25.66 Aligned_cols=68 Identities=19% Similarity=0.206 Sum_probs=40.5
Q ss_pred EEEEecCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcchHH-----
Q 044580 57 GIAFDIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGHSP----- 131 (269)
Q Consensus 57 a~lFDIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~tp----- 131 (269)
.=+.|+|| |. +.-.++++.+.+ .+ +.++=+||... +.++++- .+|+. .|+.+..+
T Consensus 60 lHvVDLdg----g~---~~n~~~i~~i~~----~~---~~vqvGGGIR~-e~i~~~l-~~Ga~----rViigT~Av~~~~ 119 (262)
T PLN02446 60 GHVIMLGA----DD---ASLAAALEALRA----YP---GGLQVGGGVNS-ENAMSYL-DAGAS----HVIVTSYVFRDGQ 119 (262)
T ss_pred EEEEECCC----CC---cccHHHHHHHHh----CC---CCEEEeCCccH-HHHHHHH-HcCCC----EEEEchHHHhCCC
Confidence 34889999 33 334677777765 23 34555677654 6677764 67775 67764322
Q ss_pred -----HHHHHHhcCCCeE
Q 044580 132 -----FKQLFNRFENEFI 144 (269)
Q Consensus 132 -----~~~L~~~~~~k~V 144 (269)
++.+.++|+..+|
T Consensus 120 ~~p~~v~~~~~~~G~~~I 137 (262)
T PLN02446 120 IDLERLKDLVRLVGKQRL 137 (262)
T ss_pred CCHHHHHHHHHHhCCCCE
Confidence 3445677754443
No 427
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=22.52 E-value=2.6e+02 Score=21.71 Aligned_cols=56 Identities=20% Similarity=0.293 Sum_probs=39.0
Q ss_pred CccEEEEecCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCC
Q 044580 54 PSFGIAFDIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVN 119 (269)
Q Consensus 54 ~~~a~lFDIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~ 119 (269)
....+++|+.||=+-+...+--=..+++.++. .|..++++..+. +.++-+ ..+|+.
T Consensus 43 ~~~~ivIDls~v~~~dS~gl~~L~~~~~~~~~----~g~~~~l~~i~p-----~v~~~~-~~~gl~ 98 (117)
T COG1366 43 GARGLVIDLSGVDFMDSAGLGVLVALLKSARL----RGVELVLVGIQP-----EVARTL-ELTGLD 98 (117)
T ss_pred CCcEEEEECCCCceechHHHHHHHHHHHHHHh----cCCeEEEEeCCH-----HHHHHH-HHhCch
Confidence 34559999999999988655555556666666 477777776542 455555 578876
No 428
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=22.44 E-value=1.1e+02 Score=26.96 Aligned_cols=38 Identities=24% Similarity=0.285 Sum_probs=30.3
Q ss_pred ecCceeecCCccccch---HHHHHHHHhhcCCCCceEEEEeCCCC
Q 044580 61 DIDGVVLLGNTPIGGS---NKALKRLYQHSGDLRIPYIFLTNGGG 102 (269)
Q Consensus 61 DIDGVL~~G~~~iPgA---~eal~~L~~~~~~~gip~iflTN~~~ 102 (269)
...||-+-|++|+-.+ .++++.+++ .|+...+-|||..
T Consensus 38 sggGVt~SGGEPllq~~fl~~l~~~~k~----~gi~~~leTnG~~ 78 (213)
T PRK10076 38 SGGGVTLSGGEVLMQAEFATRFLQRLRL----WGVSCAIETAGDA 78 (213)
T ss_pred CCCEEEEeCchHHcCHHHHHHHHHHHHH----cCCCEEEECCCCC
Confidence 3479999999987664 466777776 5999999999864
No 429
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.19 E-value=1.3e+02 Score=25.74 Aligned_cols=69 Identities=16% Similarity=0.253 Sum_probs=35.5
Q ss_pred cCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCC-CCCCcEEcchHHHHHHHHhcC
Q 044580 62 IDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVN-ILPCQVVQGHSPFKQLFNRFE 140 (269)
Q Consensus 62 IDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~-i~~~qVi~s~tp~~~L~~~~~ 140 (269)
+||+++.+... ....++.+.+ .|+|++++-+.... ..++. +..++.-.+...+++|.++ +
T Consensus 61 ~dgiii~~~~~---~~~~~~~~~~----~~ipvV~~~~~~~~-----------~~~~~~v~~d~~~~g~~~~~~l~~~-g 121 (270)
T cd06294 61 VDGFILLYSRE---DDPIIDYLKE----EKFPFVVIGKPEDD-----------KENITYVDNDNIQAGYDATEYLIKL-G 121 (270)
T ss_pred cCEEEEecCcC---CcHHHHHHHh----cCCCEEEECCCCCC-----------CCCCCeEEECcHHHHHHHHHHHHHc-C
Confidence 56655543211 2345667766 49999998542110 00111 2223322234667777665 4
Q ss_pred CCeEEEEcC
Q 044580 141 NEFIVAVGK 149 (269)
Q Consensus 141 ~k~VlvvG~ 149 (269)
.++|+++++
T Consensus 122 ~~~i~~i~~ 130 (270)
T cd06294 122 HKKIAFVGG 130 (270)
T ss_pred CccEEEecC
Confidence 567777764
No 430
>TIGR01508 rib_reduct_arch 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1'-reductase, archaeal. in riboflavin biosynthesis is reduced first, and then deaminated, in both Archaea and Fungi, opposite the order in Bacteria. The subsequent deaminase is not presently known and is not closely homologous to the deaminase domain (3.5.4.26) fused to the reductase domain (1.1.1.193) similar to this protein but found in most bacteria.
Probab=22.01 E-value=3.4e+02 Score=23.61 Aligned_cols=87 Identities=16% Similarity=0.112 Sum_probs=48.9
Q ss_pred ccEEEEecCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCC--CcEEcchHHH
Q 044580 55 SFGIAFDIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILP--CQVVQGHSPF 132 (269)
Q Consensus 55 ~~a~lFDIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~--~qVi~s~tp~ 132 (269)
..-+++|-.|.+-. ....+ +. ..|.+++|... ...++.+.| +..|+.+-. +.-+.-...+
T Consensus 68 P~rvVld~~~~~~~-------~~~~~---~~-----~~~~~v~t~~~--~~~~~~~~l-~~~gv~vi~~~~~~~dl~~~l 129 (210)
T TIGR01508 68 PVRVVVDSKLRVPL-------NARIL---NK-----DAKTIIATSED--EPEEKVEEL-EDKGVEVVKFGEGRVDLKKLL 129 (210)
T ss_pred CEEEEECCCCCCCC-------cchhh---cC-----CCCEEEEEcCC--CCHHHHHHH-HHCCCEEEEeCCCCcCHHHHH
Confidence 45677777776622 12222 22 34666666432 223556677 467765310 1101122455
Q ss_pred HHHHHhcCCCeEEEEcCchhHHHHhhcC
Q 044580 133 KQLFNRFENEFIVAVGKGEPAAVMAEYG 160 (269)
Q Consensus 133 ~~L~~~~~~k~VlvvG~~~~~~v~~~~G 160 (269)
+.| .+.+.+.|+|-|++.+...+-+.|
T Consensus 130 ~~L-~~~g~~~vlveGG~~l~~~fl~~~ 156 (210)
T TIGR01508 130 DIL-YDKGVRRLMVEGGGTLIWSLFKEN 156 (210)
T ss_pred HHH-HHCCCCEEEEeeCHHHHHHHHHCC
Confidence 556 355778999999988887777777
No 431
>TIGR03641 cas1_HMARI CRISPR-associated endonuclease Cas1, HMARI/TNEAP subtype. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.
Probab=21.99 E-value=98 Score=29.12 Aligned_cols=37 Identities=30% Similarity=0.485 Sum_probs=28.6
Q ss_pred EEecCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCC
Q 044580 59 AFDIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGG 101 (269)
Q Consensus 59 lFDIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~ 101 (269)
+-|||.+++.|+..+ ..++|+.|.++ |++++|++..|
T Consensus 31 ~~~i~~ivi~g~~~i--st~al~~l~~~----gI~v~f~~~~G 67 (322)
T TIGR03641 31 VENIDEIYVFGEVSL--NSKALSFLSKK----GIPIHFFNYYG 67 (322)
T ss_pred hhhcCeEEEEcCCcc--CHHHHHHHHHC----CCeEEEECCCC
Confidence 458999988886544 55678888874 99999999766
No 432
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=21.90 E-value=1.5e+02 Score=25.67 Aligned_cols=35 Identities=26% Similarity=0.508 Sum_probs=20.3
Q ss_pred EecCceeecCCcc-cc-chHHHHHHHHhhcCCCCceEEEEe
Q 044580 60 FDIDGVVLLGNTP-IG-GSNKALKRLYQHSGDLRIPYIFLT 98 (269)
Q Consensus 60 FDIDGVL~~G~~~-iP-gA~eal~~L~~~~~~~gip~iflT 98 (269)
-.+||.++.+... .+ ...+.++.+.. .++|++++-
T Consensus 54 ~~vdgii~~~~~~~~~~~~~~~~~~~~~----~~ipvV~~~ 90 (273)
T cd01541 54 QGIDGLIIEPTKSALPNPNIDLYLKLEK----LGIPYVFIN 90 (273)
T ss_pred cCCCEEEEeccccccccccHHHHHHHHH----CCCCEEEEe
Confidence 3567777654321 11 13356666665 489999884
No 433
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=21.90 E-value=2.7e+02 Score=24.07 Aligned_cols=42 Identities=26% Similarity=0.427 Sum_probs=24.5
Q ss_pred HHHHhcCCCeEEEEcC--chhH--HHHhhcCceEecCccccccccccCCCCcc
Q 044580 134 QLFNRFENEFIVAVGK--GEPA--AVMAEYGFKNVLSIDEYASYFDGIDPLAQ 182 (269)
Q Consensus 134 ~L~~~~~~k~VlvvG~--~~~~--~v~~~~Gf~~v~t~~d~~~~~p~ldp~~~ 182 (269)
.+.+++....++++|+ |+.. ..++.+|.+.|. .+|.+.|...
T Consensus 51 ~~i~~~~~~~~~liGSSlGG~~A~~La~~~~~~avL-------iNPav~p~~~ 96 (187)
T PF05728_consen 51 QLIEELKPENVVLIGSSLGGFYATYLAERYGLPAVL-------INPAVRPYEL 96 (187)
T ss_pred HHHHhCCCCCeEEEEEChHHHHHHHHHHHhCCCEEE-------EcCCCCHHHH
Confidence 3445555555777887 3443 346778877643 3566666443
No 434
>TIGR03638 cas1_ECOLI CRISPR-associated endonuclease Cas1, ECOLI subtype. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.
Probab=21.79 E-value=1e+02 Score=28.21 Aligned_cols=35 Identities=20% Similarity=0.332 Sum_probs=27.2
Q ss_pred ecCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCC
Q 044580 61 DIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGG 101 (269)
Q Consensus 61 DIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~ 101 (269)
|||.+++.|+..+ ..+|++.|-+ .|++++|++.+|
T Consensus 44 ~i~~Ivl~g~~si--T~~al~~l~~----~gI~v~~~~~~G 78 (269)
T TIGR03638 44 SLSCLLLGPGTSV--THAAVKLLAR----HGCLVVWVGEGG 78 (269)
T ss_pred HccEEEEeCCCcc--CHHHHHHHHH----CCCEEEEECCCC
Confidence 7887787766555 4567777887 499999999877
No 435
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=21.59 E-value=1.3e+02 Score=25.98 Aligned_cols=68 Identities=15% Similarity=0.210 Sum_probs=35.2
Q ss_pred ecCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCC-CCCCcEEcchHHHHHHHHhc
Q 044580 61 DIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVN-ILPCQVVQGHSPFKQLFNRF 139 (269)
Q Consensus 61 DIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~-i~~~qVi~s~tp~~~L~~~~ 139 (269)
-+||+++.+. ..+.++.|.. .++|++++-+.. .. -++. +..++.-.+...+++|.++
T Consensus 50 ~vdGiI~~~~-----~~~~~~~l~~----~~~PvV~~~~~~-~~-----------~~~~~v~~d~~~~g~~~~~~l~~~- 107 (265)
T cd01543 50 QGDGIIARID-----DPEMAEALQK----LGIPVVDVSGSR-EK-----------PGIPRVTTDNAAIGRMAAEHFLER- 107 (265)
T ss_pred ccceEEEECC-----CHHHHHHHhh----CCCCEEEEeCcc-CC-----------CCCCEEeeCHHHHHHHHHHHHHHC-
Confidence 4677776532 1234566665 599999995431 00 0111 1111111133566666554
Q ss_pred CCCeEEEEcCc
Q 044580 140 ENEFIVAVGKG 150 (269)
Q Consensus 140 ~~k~VlvvG~~ 150 (269)
+.+++.++|..
T Consensus 108 g~~~i~~i~~~ 118 (265)
T cd01543 108 GFRHFAFYGLP 118 (265)
T ss_pred CCcEEEEEcCC
Confidence 45678778764
No 436
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=21.44 E-value=1.3e+02 Score=25.05 Aligned_cols=28 Identities=25% Similarity=0.124 Sum_probs=18.3
Q ss_pred ccchHHHHHHHHhhcCCCCceEEEEeCCCCCC
Q 044580 73 IGGSNKALKRLYQHSGDLRIPYIFLTNGGGFR 104 (269)
Q Consensus 73 iPgA~eal~~L~~~~~~~gip~iflTN~~~~s 104 (269)
-+...++++.+++ .|.|++.+||++..+
T Consensus 114 t~~~i~~~~~ak~----~Ga~vI~IT~~~~s~ 141 (177)
T cd05006 114 SPNVLKALEAAKE----RGMKTIALTGRDGGK 141 (177)
T ss_pred CHHHHHHHHHHHH----CCCEEEEEeCCCCCc
Confidence 3566667777766 377777777765443
No 437
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=21.41 E-value=4.6e+02 Score=25.57 Aligned_cols=103 Identities=19% Similarity=0.266 Sum_probs=59.1
Q ss_pred ecCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCC-------------CCCHHHHHHHHHHHcCCCCCCCcEEc
Q 044580 61 DIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGG-------------GFRESKRATELSKLLGVNILPCQVVQ 127 (269)
Q Consensus 61 DIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~-------------~~se~~~a~~Ls~~lGi~i~~~qVi~ 127 (269)
|+||+++--..- -.+..++..++. .++|++++++.. -..--+...-| +++|++. .++.
T Consensus 63 ~~d~ii~~~~tf-~~~~~~~~~~~~----~~~Pvll~a~~~~~~~~~~~~~~~s~~g~~~~~~~l-~r~gi~~---~~v~ 133 (452)
T cd00578 63 NCDGLIVWMHTF-GPAKMWIAGLSE----LRKPVLLLATQFNREIPDFMNLNQSACGLREFGNIL-ARLGIPF---KVVY 133 (452)
T ss_pred CCcEEEEccccc-ccHHHHHHHHHh----cCCCEEEEeCCCCCCCCchhhhhcchhhhHHHHHHH-HHcCCce---eEEE
Confidence 899988754332 333555555655 589999998654 22334556667 4788874 2433
Q ss_pred ch----HHHH---------HHHHhcCCCeEEEEcCch--h-------HHHHhhcCceEe-cCcccccc
Q 044580 128 GH----SPFK---------QLFNRFENEFIVAVGKGE--P-------AAVMAEYGFKNV-LSIDEYAS 172 (269)
Q Consensus 128 s~----tp~~---------~L~~~~~~k~VlvvG~~~--~-------~~v~~~~Gf~~v-~t~~d~~~ 172 (269)
++ ...+ ...+..++.++..+|... + .+..+..|.+.. +...|+..
T Consensus 134 g~~~d~~~~~~i~~~~raa~~~~~lr~~rig~iG~~~~~~~~~~~d~~~~~~~fG~~v~~i~~~el~~ 201 (452)
T cd00578 134 GHWKDEDVLRKIESWARAAAAVATLRGLRVGRFGDRMRGMAVTEGDKVLAQIKFGVSVEYLEVGELVR 201 (452)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhcCceEEECCCcCCcEEecCCHHHHHHhhCeEEEEEcHHHHHH
Confidence 33 1111 123455678899999642 1 134577887764 34445433
No 438
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=21.27 E-value=1.5e+02 Score=25.66 Aligned_cols=31 Identities=29% Similarity=0.774 Sum_probs=19.6
Q ss_pred ecCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeC
Q 044580 61 DIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTN 99 (269)
Q Consensus 61 DIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN 99 (269)
.+||+++.+.. + .+.++.+.+ .++|++++-.
T Consensus 58 ~vdgiii~~~~--~--~~~~~~l~~----~~ipvV~~~~ 88 (268)
T cd06277 58 KVDGIILLGGI--S--TEYIKEIKE----LGIPFVLVDH 88 (268)
T ss_pred CCCEEEEeCCC--C--hHHHHHHhh----cCCCEEEEcc
Confidence 46777765522 1 223777776 4999998853
No 439
>TIGR00287 cas1 CRISPR-associated endonuclease Cas1. This model identifies CRISPR-associated protein Cas1, the most universal CRISPR system protein. CRISPR is an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Cas1 is a metal-dependent DNA-specific endonuclease.
Probab=21.24 E-value=1.1e+02 Score=28.68 Aligned_cols=37 Identities=32% Similarity=0.598 Sum_probs=27.9
Q ss_pred EEecCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCC
Q 044580 59 AFDIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGG 101 (269)
Q Consensus 59 lFDIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~ 101 (269)
+-|||.+++.|+.-+ ...+|+.|.++ ||+++|++.+|
T Consensus 32 ~~~i~~I~i~g~~~l--st~~l~~l~~~----~I~v~f~~~~g 68 (323)
T TIGR00287 32 VANVDCIVLFGGVSI--SSAAIRELAKR----GIDIVFLGGDG 68 (323)
T ss_pred hhhccEEEEECCCCc--CHHHHHHHHHC----CCeEEEECCCC
Confidence 558888888776544 45677778874 99999999665
No 440
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=21.21 E-value=1.9e+02 Score=25.05 Aligned_cols=92 Identities=21% Similarity=0.213 Sum_probs=43.1
Q ss_pred ecCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcchHHHHHHHHhc-
Q 044580 61 DIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGHSPFKQLFNRF- 139 (269)
Q Consensus 61 DIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~tp~~~L~~~~- 139 (269)
-.||+++.+.. .....+.++.+.+ .++|++++-........ ...+. .+..++.-.+...+++|.++.
T Consensus 55 ~vdgiIi~~~~-~~~~~~~i~~~~~----~~iPvV~~~~~~~~~~~--~~~~~-----~v~~d~~~~g~~~~~~l~~~~~ 122 (273)
T cd06309 55 GVDVIILAPVV-ETGWDPVLKEAKA----AGIPVILVDRGVDVKDD--SLYVT-----FIGSDFVEEGRRAADWLAKATG 122 (273)
T ss_pred CCCEEEEcCCc-cccchHHHHHHHH----CCCCEEEEecCcCCccC--cceee-----EecCChHHHHHHHHHHHHHHcC
Confidence 35666664432 1222456777776 49999888642110000 00010 122233333446667777652
Q ss_pred CCCeEEEEcCc-hh-HHHHhhcCceEe
Q 044580 140 ENEFIVAVGKG-EP-AAVMAEYGFKNV 164 (269)
Q Consensus 140 ~~k~VlvvG~~-~~-~~v~~~~Gf~~v 164 (269)
+.+++.+++.. +. ....+..||+..
T Consensus 123 g~~~i~~i~~~~~~~~~~~R~~Gf~~~ 149 (273)
T cd06309 123 GKGNIVELQGTVGSSVAIDRKKGFAEV 149 (273)
T ss_pred CCceEEEEeCCCCCchHHHHHHHHHHH
Confidence 34566666542 22 122444555544
No 441
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=21.15 E-value=2.5e+02 Score=21.13 Aligned_cols=56 Identities=20% Similarity=0.229 Sum_probs=38.5
Q ss_pred CccEEEEecCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCC
Q 044580 54 PSFGIAFDIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVN 119 (269)
Q Consensus 54 ~~~a~lFDIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~ 119 (269)
..+.+++|+-||=+-....+---.+..+.++. .|+.++++-=+ .+..+.| +..|+.
T Consensus 40 ~~~~vvlDls~v~~iDssg~~~l~~~~~~~~~----~g~~l~l~g~~-----~~v~~~l-~~~gl~ 95 (109)
T cd07041 40 RARGVIIDLTGVPVIDSAVARHLLRLARALRL----LGARTILTGIR-----PEVAQTL-VELGID 95 (109)
T ss_pred CCCEEEEECCCCchhcHHHHHHHHHHHHHHHH----cCCeEEEEeCC-----HHHHHHH-HHhCCC
Confidence 56789999999999887655555556666665 47777766532 2455566 577775
No 442
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=21.14 E-value=2.1e+02 Score=25.11 Aligned_cols=29 Identities=14% Similarity=0.207 Sum_probs=21.4
Q ss_pred ccEEEEecCCc-cchhhHHHHHHHHHhCCC
Q 044580 210 VQAAFIVSDSV-DWSRDIQVLCDILRTGGL 238 (269)
Q Consensus 210 i~AI~v~~Dp~-dW~~diQii~DlL~s~G~ 238 (269)
-.+|++|||-. .=...+.-|++.|++.|+
T Consensus 186 ~g~IiLlHd~~~~t~~aL~~ii~~lk~~Gy 215 (224)
T TIGR02884 186 PGAILLLHAVSKDNAEALDKIIKDLKEQGY 215 (224)
T ss_pred CCcEEEEECCCCCHHHHHHHHHHHHHHCCC
Confidence 35899999942 334568888999998775
No 443
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=21.01 E-value=1.6e+02 Score=24.56 Aligned_cols=29 Identities=7% Similarity=-0.079 Sum_probs=20.2
Q ss_pred ccchHHHHHHHHhhcCCCCceEEEEeCCCCCCH
Q 044580 73 IGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRE 105 (269)
Q Consensus 73 iPgA~eal~~L~~~~~~~gip~iflTN~~~~se 105 (269)
-+...++++.+++ .|.|++.+|++...+-
T Consensus 85 t~~~i~~~~~ak~----~g~~ii~IT~~~~s~l 113 (179)
T TIGR03127 85 TESLVTVAKKAKE----IGATVAAITTNPESTL 113 (179)
T ss_pred cHHHHHHHHHHHH----CCCeEEEEECCCCCch
Confidence 3556677777776 4888888888765543
No 444
>PRK05839 hypothetical protein; Provisional
Probab=20.84 E-value=3.4e+02 Score=25.43 Aligned_cols=63 Identities=6% Similarity=-0.066 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHHcCCCCCCCcEEc-ch--HHHHHHHHhc----CCCeEEEEcC--chhHHHHhhcCceEec
Q 044580 103 FRESKRATELSKLLGVNILPCQVVQ-GH--SPFKQLFNRF----ENEFIVAVGK--GEPAAVMAEYGFKNVL 165 (269)
Q Consensus 103 ~se~~~a~~Ls~~lGi~i~~~qVi~-s~--tp~~~L~~~~----~~k~VlvvG~--~~~~~v~~~~Gf~~v~ 165 (269)
..++..++.+++..|+++++++|+. ++ ..+..+..-+ ++..|++-.. ......++..|.+.+.
T Consensus 64 ~lr~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~v~~ 135 (374)
T PRK05839 64 SLREAQRGFFKRRFKIELKENELIPTFGTREVLFNFPQFVLFDKQNPTIAYPNPFYQIYEGAAIASRAKVLL 135 (374)
T ss_pred HHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHHhcCCCCCEEEECCCCchhhHHHHHhcCCEEEE
Confidence 4456677777767799999999975 33 3333332221 3455554322 2335667888987754
No 445
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=20.70 E-value=3.6e+02 Score=20.61 Aligned_cols=47 Identities=15% Similarity=0.165 Sum_probs=25.9
Q ss_pred cccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCC
Q 044580 72 PIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVN 119 (269)
Q Consensus 72 ~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~ 119 (269)
.++...++.+.+.........+++++.++++......+..| +.+|++
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~vv~~c~~g~~~a~~~~~~l-~~~G~~ 106 (122)
T cd01448 60 MLPSPEEFAELLGSLGISNDDTVVVYDDGGGFFAARAWWTL-RYFGHE 106 (122)
T ss_pred CCCCHHHHHHHHHHcCCCCCCEEEEECCCCCccHHHHHHHH-HHcCCC
Confidence 34444555555543111246788888877655554555556 466764
No 446
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=20.69 E-value=1.7e+02 Score=21.81 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=34.3
Q ss_pred cCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHH-HHHHHHHcCCC
Q 044580 68 LGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKR-ATELSKLLGVN 119 (269)
Q Consensus 68 ~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~-a~~Ls~~lGi~ 119 (269)
+.+..+-|..++++.|+.. ...+++++++........ ...+.+..+++
T Consensus 12 ~~~~lv~G~~~v~k~l~~~----~~~lvilA~d~~~~~~~~~l~~~c~~~~Ip 60 (95)
T PF01248_consen 12 KAGRLVKGIKEVLKALKKG----KAKLVILAEDCSPDSIKKHLPALCEEKNIP 60 (95)
T ss_dssp HHSEEEESHHHHHHHHHTT----CESEEEEETTSSSGHHHHHHHHHHHHTTEE
T ss_pred hcCCEEEchHHHHHHHHcC----CCcEEEEcCCCChhhhcccchhheecccee
Confidence 3455778899999999983 888999999876655444 55565555555
No 447
>TIGR03640 cas1_DVULG CRISPR-associated endonuclease Cas1, DVULG subtype. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.
Probab=20.55 E-value=1.1e+02 Score=29.03 Aligned_cols=37 Identities=30% Similarity=0.512 Sum_probs=28.1
Q ss_pred EEecCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCC
Q 044580 59 AFDIDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGG 101 (269)
Q Consensus 59 lFDIDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~ 101 (269)
+=|||.+++.|+.-| ...||+.|.++ |||++|++.+|
T Consensus 36 ~~~i~~Ivi~g~~~i--st~al~~l~~~----~I~v~f~~~~G 72 (340)
T TIGR03640 36 LHHLGGIVCFGNVGL--SPFLMGRCAED----GISLVFLTENG 72 (340)
T ss_pred hhheeEEEEEcCCCc--CHHHHHHHHHC----CCEEEEECCCC
Confidence 448888888876444 56778888884 99999998766
No 448
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=20.55 E-value=5.1e+02 Score=21.67 Aligned_cols=28 Identities=11% Similarity=0.184 Sum_probs=18.4
Q ss_pred cEEEEecCCccchh---hHHHHHHHHHhCCC
Q 044580 211 QAAFIVSDSVDWSR---DIQVLCDILRTGGL 238 (269)
Q Consensus 211 ~AI~v~~Dp~dW~~---diQii~DlL~s~G~ 238 (269)
.+|++|||..+... .+.-|++-|+..|+
T Consensus 152 g~Iil~Hd~~~~~~t~~~l~~~i~~l~~~Gy 182 (191)
T TIGR02764 152 GDIILLHASDSAKQTVKALPTIIKKLKEKGY 182 (191)
T ss_pred CCEEEEeCCCCcHhHHHHHHHHHHHHHHCCC
Confidence 36999997544433 45556777777775
No 449
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=20.48 E-value=3.8e+02 Score=26.93 Aligned_cols=97 Identities=15% Similarity=0.151 Sum_probs=57.0
Q ss_pred cCceeecCCccccchHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCC----------------CCC-Cc
Q 044580 62 IDGVVLLGNTPIGGSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVN----------------ILP-CQ 124 (269)
Q Consensus 62 IDGVL~~G~~~iPgA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~----------------i~~-~q 124 (269)
-|.+++-|-..+ +....+.|.+ .|++++.+.++. ++++++. +.|.+ ++. +-
T Consensus 417 ~~hiiI~G~G~~--G~~la~~L~~----~g~~vvvId~d~-----~~~~~~~-~~g~~~i~GD~~~~~~L~~a~i~~a~~ 484 (558)
T PRK10669 417 CNHALLVGYGRV--GSLLGEKLLA----AGIPLVVIETSR-----TRVDELR-ERGIRAVLGNAANEEIMQLAHLDCARW 484 (558)
T ss_pred CCCEEEECCChH--HHHHHHHHHH----CCCCEEEEECCH-----HHHHHHH-HCCCeEEEcCCCCHHHHHhcCccccCE
Confidence 366777665444 3456777777 489999999874 4566663 55553 111 22
Q ss_pred EE-cch------HHHHHHHHhcCCCeEEEEcCch-hHHHHhhcCceEecCcccc
Q 044580 125 VV-QGH------SPFKQLFNRFENEFIVAVGKGE-PAAVMAEYGFKNVLSIDEY 170 (269)
Q Consensus 125 Vi-~s~------tp~~~L~~~~~~k~VlvvG~~~-~~~v~~~~Gf~~v~t~~d~ 170 (269)
++ +.. .......+.+++.++++-..+. ..+.+++.|.+.++.|++.
T Consensus 485 viv~~~~~~~~~~iv~~~~~~~~~~~iiar~~~~~~~~~l~~~Gad~vv~p~~~ 538 (558)
T PRK10669 485 LLLTIPNGYEAGEIVASAREKRPDIEIIARAHYDDEVAYITERGANQVVMGERE 538 (558)
T ss_pred EEEEcCChHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHHcCCCEEEChHHH
Confidence 32 211 1122234556666777665543 3466888898888876654
No 450
>COG0614 FepB ABC-type Fe3+-hydroxamate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=20.42 E-value=1.9e+02 Score=25.80 Aligned_cols=86 Identities=16% Similarity=0.184 Sum_probs=43.1
Q ss_pred HHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEEcch-HHHHHHHHhcCC----CeEE------
Q 044580 77 NKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVVQGH-SPFKQLFNRFEN----EFIV------ 145 (269)
Q Consensus 77 ~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi~s~-tp~~~L~~~~~~----k~Vl------ 145 (269)
.+.+..+.+ .++|++++..++...-.+..+.+.+.+|-+-..++++... .-+..+.++..+ .+|+
T Consensus 127 ~~~~~~~~~----~~~pvv~~~~~~~~~~~~~i~~lg~~~g~e~~A~~li~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 202 (319)
T COG0614 127 DDLIYKLLS----LGAPVVVVDYGSLDDIKEQIRLLGKALGKEEKAEELIAEYDQRLAALRARTADVKGKPTVYVLRSPG 202 (319)
T ss_pred hhHHHHHHh----cCCCEEEECCcchhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccC
Confidence 444445554 4899988877633333344444544455543333444321 222233333322 2333
Q ss_pred ----EEcCchhH-HHHhhcCceEecC
Q 044580 146 ----AVGKGEPA-AVMAEYGFKNVLS 166 (269)
Q Consensus 146 ----vvG~~~~~-~v~~~~Gf~~v~t 166 (269)
+.|.+... ++++.+|++++..
T Consensus 203 ~~~~~~g~~s~~~~~l~~aG~~n~~~ 228 (319)
T COG0614 203 GGLYTAGGNSFIGDILELAGGKNIAA 228 (319)
T ss_pred CceEEEcCCCchHHHHHHhCCCCccc
Confidence 34444333 4789999888653
No 451
>TIGR03639 cas1_NMENI CRISPR-associated endonuclease Cas1, NMENI subtype. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.
Probab=20.40 E-value=1e+02 Score=28.39 Aligned_cols=37 Identities=27% Similarity=0.294 Sum_probs=28.0
Q ss_pred EEecCceeecC-CccccchHHHHHHHHhhcCCCCceEEEEeCCC
Q 044580 59 AFDIDGVVLLG-NTPIGGSNKALKRLYQHSGDLRIPYIFLTNGG 101 (269)
Q Consensus 59 lFDIDGVL~~G-~~~iPgA~eal~~L~~~~~~~gip~iflTN~~ 101 (269)
+=|||.+++.| +.-+ ..++++.|.+ .||+++|++.+|
T Consensus 32 ~~~i~~Ivi~g~~~~l--st~~l~~l~~----~~I~v~f~~~~G 69 (278)
T TIGR03639 32 LEDIDVILIENPQITI--SSALLSALAE----NNIALIFCDEKH 69 (278)
T ss_pred hHHccEEEEeCCCEEE--cHHHHHHHHH----CCCeEEEECCCC
Confidence 34899999988 5444 4567777777 499999999776
No 452
>cd01716 Hfq Hfq, an abundant, ubiquitous RNA-binding protein, functions as a pleiotrophic regulator of RNA metabolism in prokaryotes, required for transcription of some transcripts and degradation of others. Hfq binds small RNA molecules called riboregulators that modulate the stability or translation efficiency of RNA transcripts. Hfq binds preferentially to unstructured A/U-rich RNA sequences and is similar to the eukaryotic Sm proteins in both sequence and structure. Hfq forms a homo-hexameric ring similar to the heptameric ring of the Sm proteins.
Probab=20.38 E-value=1.1e+02 Score=22.00 Aligned_cols=20 Identities=35% Similarity=0.595 Sum_probs=15.4
Q ss_pred HHHHHHHhhcCCCCceE-EEEeCCC
Q 044580 78 KALKRLYQHSGDLRIPY-IFLTNGG 101 (269)
Q Consensus 78 eal~~L~~~~~~~gip~-iflTN~~ 101 (269)
.+|+.++++ ++|+ +||.||-
T Consensus 2 ~fln~~r~~----~~~Vtv~L~NG~ 22 (61)
T cd01716 2 QFLNAARKE----KIPVTIYLVNGV 22 (61)
T ss_pred HHHHHHHHc----CCcEEEEEeCCc
Confidence 367788874 8888 8899874
No 453
>PRK00395 hfq RNA-binding protein Hfq; Provisional
Probab=20.35 E-value=1.1e+02 Score=23.22 Aligned_cols=20 Identities=40% Similarity=0.645 Sum_probs=15.8
Q ss_pred HHHHHHHhhcCCCCceE-EEEeCCC
Q 044580 78 KALKRLYQHSGDLRIPY-IFLTNGG 101 (269)
Q Consensus 78 eal~~L~~~~~~~gip~-iflTN~~ 101 (269)
.+++.++++ ++|+ +||+||-
T Consensus 10 ~fLn~lr~~----~~~VtifL~NG~ 30 (79)
T PRK00395 10 PFLNALRKE----RVPVTIYLVNGI 30 (79)
T ss_pred HHHHHHHHc----CCCEEEEEeCCc
Confidence 467888874 8888 8999984
No 454
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=20.32 E-value=2.6e+02 Score=26.07 Aligned_cols=61 Identities=15% Similarity=0.098 Sum_probs=35.9
Q ss_pred CccEEEEecCcee--e----cCCccccchHHHHHHHHhhcCCCCceEEEE---eCCCCCC-HHHHHHHHHHHcCCC
Q 044580 54 PSFGIAFDIDGVV--L----LGNTPIGGSNKALKRLYQHSGDLRIPYIFL---TNGGGFR-ESKRATELSKLLGVN 119 (269)
Q Consensus 54 ~~~a~lFDIDGVL--~----~G~~~iPgA~eal~~L~~~~~~~gip~ifl---TN~~~~s-e~~~a~~Ls~~lGi~ 119 (269)
....|.+.+||.= + .+...+..+.++|+.+++ .|+++.+. +++.... -.+.++.+ +.+|++
T Consensus 123 ~~~~i~VSLDG~~e~hd~~~~~~g~f~~~l~~I~~l~~----~G~~v~v~~tv~~~~n~~ei~~~~~~~-~~lGv~ 193 (318)
T TIGR03470 123 PYLTFSVHLDGLREHHDASVCREGVFDRAVEAIREAKA----RGFRVTTNTTLFNDTDPEEVAEFFDYL-TDLGVD 193 (318)
T ss_pred CCcEEEEEEecCchhhchhhcCCCcHHHHHHHHHHHHH----CCCcEEEEEEEeCCCCHHHHHHHHHHH-HHcCCC
Confidence 4567888999942 1 223456678899999987 47887542 3432222 22333444 567764
No 455
>PF10881 DUF2726: Protein of unknown function (DUF2726); InterPro: IPR024402 This domain found in bacterial proteins has no known function.
Probab=20.25 E-value=4.2e+02 Score=20.77 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=19.3
Q ss_pred CCceEEEEeCCCCCCHHHHHHHHH
Q 044580 90 LRIPYIFLTNGGGFRESKRATELS 113 (269)
Q Consensus 90 ~gip~iflTN~~~~se~~~a~~Ls 113 (269)
.|+|++-+.-....+.++..+.|.
T Consensus 100 agiplir~~~~~~~~~~~l~~~l~ 123 (126)
T PF10881_consen 100 AGIPLIRISPKDSYSVEELRRDLR 123 (126)
T ss_pred CCCCEEEEeCCCCCCHHHHHHHHH
Confidence 699999997777778888777774
No 456
>PF00322 Endothelin: Endothelin family; InterPro: IPR001928 Endothelins (ET's) are the most potent vasoconstrictors known [, , ]. They stimulate cardiac contraction, regulate release of vasoactive substances, and stimulate mitogenesis in blood vessels in primary culture. They also stimulate contraction in almost all other smooth muscles (e.g., uterus, bronchus, vas deferensa and stomach) and stimulate secretion in several tissues (e.g., kidney, liver and adrenals). Endothelin receptors have also been found in the brain, e.g. cerebral cortex, cerebellum and glial cells. Endothelins have been implicated in a variety of pathophysiological conditions associated with stress, including hypertension, myocardial infarction, subarachnoid haemorrhage and renal failure. Endothelins are synthesised by proteolysis of large preproendothelins, which are cleaved to 'big endothelins' before being processed to the mature peptide. Sarafotoxins (SRTX) and bibrotoxin (BTX) are cardiotoxins from the venom of snakes of the Atractaspis family, structurally and functionally [, ] similar to endothelin. As shown in the following schematic representation, these peptides which are 21 residues long contain two intramolecular disulphide bonds. +-------------+ | | CxCxxxxxxxCxxxCxxxxxx | | +-------+ 'C': conserved cysteine involved in a disulphide bond. ; GO: 0019229 regulation of vasoconstriction, 0005576 extracellular region; PDB: 1V6R_A 1T7H_A 1EDP_A 1EDN_A 3CMH_A 6CMH_A 1SRB_A 2LDF_A.
Probab=20.11 E-value=11 Score=23.52 Aligned_cols=13 Identities=23% Similarity=0.467 Sum_probs=9.0
Q ss_pred eEEEcCCcccccc
Q 044580 249 LYFANDDLEYQVL 261 (269)
Q Consensus 249 i~~sn~Dl~w~~~ 261 (269)
+|||+-|++|-+.
T Consensus 17 ~yFChldiIW~nt 29 (31)
T PF00322_consen 17 VYFCHLDIIWVNT 29 (31)
T ss_dssp HHHHHCTTT-S--
T ss_pred heeecccEEEecC
Confidence 7899999999753
No 457
>PF03948 Ribosomal_L9_C: Ribosomal protein L9, C-terminal domain; InterPro: IPR020069 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L9 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L9 is known to bind directly to the 23S rRNA. It belongs to a family of ribosomal proteins grouped on the basis of sequence similarities [, ]. The crystal structure of Bacillus stearothermophilus L9 shows the 149-residue protein comprises two globular domains connected by a rigid linker []. Each domain contains an rRNA binding site, and the protein functions as a structural protein in the large subunit of the ribosome. The C-terminal domain consists of two loops, an alpha-helix and a three-stranded mixed parallel, anti-parallel beta-sheet packed against the central alpha-helix. The long central alpha-helix is exposed to solvent in the middle and participates in the hydrophobic cores of the two domains at both ends. ; PDB: 3D5B_I 3PYV_H 3F1H_I 3PYR_H 3MRZ_H 1VSP_G 3MS1_H 1VSA_G 3PYT_H 2WH4_I ....
Probab=20.11 E-value=74 Score=24.15 Aligned_cols=29 Identities=17% Similarity=0.201 Sum_probs=24.4
Q ss_pred CCCCHHHHHHHHHHHcCCCCCCCcEEcch
Q 044580 101 GGFRESKRATELSKLLGVNILPCQVVQGH 129 (269)
Q Consensus 101 ~~~se~~~a~~Ls~~lGi~i~~~qVi~s~ 129 (269)
|+.|..+.++.|.+..|++++..+|...+
T Consensus 30 GSVt~~dIa~~l~~~~g~~Idk~~I~l~~ 58 (87)
T PF03948_consen 30 GSVTSKDIAKALKEQTGIEIDKKKIELPE 58 (87)
T ss_dssp SEBSHHHHHHHHHHCCSSSSSSSSBCSSS
T ss_pred cCcCHHHHHHHHHHhhCCeEeccEEECCC
Confidence 46899999999986669999999987654
No 458
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=20.10 E-value=3.9e+02 Score=24.44 Aligned_cols=78 Identities=15% Similarity=0.171 Sum_probs=40.9
Q ss_pred chHHHHHHHHhhcCCCCceEEEEeCCCCCCHHHHHHHHHHHcCCCCCCCcEE--cchHHHHHHHHhcCCCeEEEEcCchh
Q 044580 75 GSNKALKRLYQHSGDLRIPYIFLTNGGGFRESKRATELSKLLGVNILPCQVV--QGHSPFKQLFNRFENEFIVAVGKGEP 152 (269)
Q Consensus 75 gA~eal~~L~~~~~~~gip~iflTN~~~~se~~~a~~Ls~~lGi~i~~~qVi--~s~tp~~~L~~~~~~k~VlvvG~~~~ 152 (269)
.=.+.++.|.+ .+.+++++ |+..+.+.++.+.+.++ +.++ .+.+.+..+..-...-..+|.++.+.
T Consensus 195 ~~~~li~~l~~----~~~~ivl~---G~~~e~~~~~~i~~~~~-----~~~~~l~g~~sL~el~ali~~a~l~I~~DSGp 262 (334)
T TIGR02195 195 HYAELAKRLID----QGYQVVLF---GSAKDHPAGNEIEALLP-----GELRNLAGETSLDEAVDLIALAKAVVTNDSGL 262 (334)
T ss_pred HHHHHHHHHHH----CCCEEEEE---EChhhHHHHHHHHHhCC-----cccccCCCCCCHHHHHHHHHhCCEEEeeCCHH
Confidence 44456666655 25665554 22345566666643322 2232 23344444444333334555555577
Q ss_pred HHHHhhcCceEe
Q 044580 153 AAVMAEYGFKNV 164 (269)
Q Consensus 153 ~~v~~~~Gf~~v 164 (269)
..++..+|-..+
T Consensus 263 ~HlAaA~~~P~i 274 (334)
T TIGR02195 263 MHVAAALNRPLV 274 (334)
T ss_pred HHHHHHcCCCEE
Confidence 888888886654
Done!