BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044581
         (203 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2CKK|A Chain A, High Resolution Crystal Structure Of The Human Kin17 C-
           Terminal Domain Containing A Kow Motif Kin17
          Length = 127

 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 7/95 (7%)

Query: 70  ESERREDNYNYNVPWLRSHIRVRIISKELKSGRLYLKKGEVV-DVVGPTMCDISMDESGE 128
           E ++R    +Y   WL+  I V+II+K+L  G  Y KK  +V +V+      + M +SG+
Sbjct: 3   EEKKRTARTDY---WLQPEIIVKIITKKL--GEKYHKKKAIVKEVIDKYTAVVKMIDSGD 57

Query: 129 LIQGVDQDLLETALPRRGGPVLVLYGRHKGVYGNL 163
            ++ +DQ  LET +P  G  +LVL G ++G  G L
Sbjct: 58  KLK-LDQTHLETVIPAPGKRILVLNGGYRGNEGTL 91


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.136    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,689,857
Number of Sequences: 62578
Number of extensions: 223933
Number of successful extensions: 354
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 351
Number of HSP's gapped (non-prelim): 7
length of query: 203
length of database: 14,973,337
effective HSP length: 94
effective length of query: 109
effective length of database: 9,091,005
effective search space: 990919545
effective search space used: 990919545
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.5 bits)