BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044581
(203 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C801|MOS2_ARATH Protein MOS2 OS=Arabidopsis thaliana GN=MOS2 PE=2 SV=1
Length = 462
Score = 196 bits (499), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 91/154 (59%), Positives = 121/154 (78%)
Query: 44 DRDNKHNQESRNSEKSEKQQANKRSRESERREDNYNYNVPWLRSHIRVRIISKELKSGRL 103
++D K + R +E+ + + ++ + WLRSHI+VRI+SK+ K GRL
Sbjct: 303 EKDKKTSGRGRGAERGSRSEVRASEKQDRGQTRERKVKPSWLRSHIKVRIVSKDWKGGRL 362
Query: 104 YLKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLETALPRRGGPVLVLYGRHKGVYGNL 163
YLKKG+VVDVVGPT CDI+MDE+ EL+QGVDQ+LLETALPRRGGPVLVL G+HKGVYGNL
Sbjct: 363 YLKKGKVVDVVGPTTCDITMDETQELVQGVDQELLETALPRRGGPVLVLSGKHKGVYGNL 422
Query: 164 VDRDLDRETGVVRDADTHELVNVKLEQIAEYIGD 197
V++DLD+ETGVVRD D H++++V+L+Q+AEY+GD
Sbjct: 423 VEKDLDKETGVVRDLDNHKMLDVRLDQVAEYMGD 456
>sp|Q6NU07|GPKOW_XENLA G patch domain and KOW motifs-containing protein OS=Xenopus laevis
GN=gpkow PE=2 SV=1
Length = 487
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 84/160 (52%), Gaps = 11/160 (6%)
Query: 39 LKKSGDRDNKHNQESRNSEKSEKQQANKRSRESERREDNYNYNVPWLRSHIRVRIISKEL 98
L KS + +N+E R+ ++S +Q+ K+ E WLR IRVR I K
Sbjct: 333 LSKSSGNGDSNNREKRHRQRSPEQEKEKKKIRPEPHG--------WLRRDIRVRFIDKNY 384
Query: 99 KSGRLYLKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLETALPRRGGP-VLVLYGRHK 157
K G+ Y K V DV+ PT C + E+G +++ + QD+LET +P+ G V+V+ G+++
Sbjct: 385 KGGKYYNSKMLVEDVLSPTRC-VCRTENGCILEDIRQDMLETIIPKEEGEHVMVVLGKYR 443
Query: 158 GVYGNLVDRDLDRETGVVRDADTHELV-NVKLEQIAEYIG 196
G+ G ++ RD + +V+ H+ + + I Y G
Sbjct: 444 GMVGKILHRDKQKSRALVQLQGEHDSAETLSYDAICHYTG 483
>sp|Q56A08|GPKOW_MOUSE G patch domain and KOW motifs-containing protein OS=Mus musculus
GN=Gpkow PE=2 SV=2
Length = 488
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 4/152 (2%)
Query: 46 DNKHNQESRNSEKSEKQQANKRSRESERREDNYNYNVPWLRSHIRVRIISKELKSGRLYL 105
D+K Q + SEK K +++ + E N WL +RVR I K KSGR Y
Sbjct: 333 DSKRRQ--KGSEKKRKHSPDRQDGPVPKTEKAAPRNKHWLHRDLRVRFIDKLHKSGRYYN 390
Query: 106 KKGEVVDVVGPTMCDISMDESGELIQGVDQDLLETALPR-RGGPVLVLYGRHKGVYGNLV 164
K + DV+ P C DE G +++ V +D+LET +P+ G V+V+ G H G G L
Sbjct: 391 TKMTIEDVLSPDTCVCRTDE-GRVLEDVREDMLETLIPKGEGHRVMVVLGPHAGKVGLLR 449
Query: 165 DRDLDRETGVVRDADTHELVNVKLEQIAEYIG 196
RD + +V+ +++V + I +Y+G
Sbjct: 450 SRDRAQSHALVQLRRENQVVELHYNAICQYMG 481
>sp|Q90X38|GPKOW_DANRE G patch domain and KOW motifs-containing protein OS=Danio rerio
GN=gpkow PE=2 SV=2
Length = 506
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 10/168 (5%)
Query: 31 KKEKKKDELKKSGDRDNKHNQESRNSEKSEKQQANKRSRESERREDNYNYNVPWLRSHIR 90
K E+ K + + DRD K + +S EK K SR S WL+ +R
Sbjct: 343 KDERGKTDRSREKDRDQKKRKHRESSTDREKPPPAKESRSSPPAPS-------WLQRDLR 395
Query: 91 VRIISKELKSGRLYLKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLETALPRRGGP-V 149
VR I K K G+ Y K V DV+ P C + E G ++ + Q +LET +P+ +
Sbjct: 396 VRFIDKAFKGGKYYNSKMRVEDVLTPHTC-VCRTEEGRMLDDIRQKMLETIVPKNDSDYI 454
Query: 150 LVLYGRHKGVYGNLVDRDLDRETGVVR-DADTHELVNVKLEQIAEYIG 196
+V+ G H+G G ++ RD ++ +V+ D + + + I Y+G
Sbjct: 455 MVVLGEHRGQVGRILKRDREKCRAMVQLDRYEERVFTLDYDTICHYVG 502
>sp|Q92917|GPKOW_HUMAN G patch domain and KOW motifs-containing protein OS=Homo sapiens
GN=GPKOW PE=1 SV=2
Length = 476
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 75/143 (52%), Gaps = 2/143 (1%)
Query: 55 NSEKSEKQQANKRSRESERREDNYNYNVPWLRSHIRVRIISKELKSGRLYLKKGEVVDVV 114
NSE+ K +++ + + E + WL +RVR + K G+ Y K + DV+
Sbjct: 328 NSERKRKHLPDRQDGPAAKSEKAAPRSQHWLHRDLRVRFVDNMYKGGQYYNTKMIIEDVL 387
Query: 115 GPTMCDISMDESGELIQGVDQDLLETALPR-RGGPVLVLYGRHKGVYGNLVDRDLDRETG 173
P C DE G +++G+ +D+LET +P+ G V+V+ G G G+L+ RD R
Sbjct: 388 SPDTCVCRTDE-GRVLEGLREDMLETLVPKAEGDRVMVVLGPQTGRVGHLLSRDRARSRA 446
Query: 174 VVRDADTHELVNVKLEQIAEYIG 196
+V+ +++V + + I +Y+G
Sbjct: 447 LVQLPRENQVVELHYDAICQYMG 469
Score = 30.8 bits (68), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 146 GGPVLVLYGRHKGVYGNLVDRDLDRETGVVRDADTHELVNV 186
GG V+VL G H+G+YG + D D +VR A +V V
Sbjct: 244 GGAVVVLSGPHRGLYGKVEGLDPDNVRAMVRLAVGSRVVTV 284
>sp|Q21924|MOS2_CAEEL Protein mos-2 homolog OS=Caenorhabditis elegans GN=mos-2 PE=1 SV=1
Length = 462
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 2/110 (1%)
Query: 84 WLRSHIRVRIISKELKSGRLYLKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLETALP 143
W R+ + VR I ++ K G LY +K +VDV G I D+ G + Q LET +P
Sbjct: 343 WARTDLLVRFIDEDFKRGSLYEQKVRIVDVAGDNDVTIE-DDRGNTHYNIRQSWLETVIP 401
Query: 144 RR-GGPVLVLYGRHKGVYGNLVDRDLDRETGVVRDADTHELVNVKLEQIA 192
R G ++++ G+ G ++D+D +E R T+++V E +
Sbjct: 402 REIGEKLMIVAGKRSGQLAVMLDKDKRKEKVTARLVATNDVVTAYFEDVC 451
>sp|Q55D16|KIN17_DICDI KIN17-like protein OS=Dictyostelium discoideum GN=DDB_G0269816 PE=3
SV=1
Length = 445
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 54/87 (62%), Gaps = 1/87 (1%)
Query: 83 PWLRSHIRVRIISKELKSGRLYLKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLETAL 142
PW+ I ++II KEL +G+ + +KG +V V + + + +SG++++ +DQ LET +
Sbjct: 334 PWIIKDIVIKIIDKELANGKYFKQKGYIVSVENEFLAKVKLLDSGDILK-IDQTFLETVI 392
Query: 143 PRRGGPVLVLYGRHKGVYGNLVDRDLD 169
P+ G V+++ G+++G + + + D
Sbjct: 393 PQIGSTVIIVNGKYRGKEATIKNVNFD 419
>sp|Q8K339|KIN17_MOUSE DNA/RNA-binding protein KIN17 OS=Mus musculus GN=Kin PE=2 SV=1
Length = 391
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 84 WLRSHIRVRIISKELKSGRLYLKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLETALP 143
WL+ I V+II+K+L + + KKG V +V+ + M +SG+ ++ +DQ LET +P
Sbjct: 278 WLQPGIVVKIITKKLGE-KYHKKKGVVKEVIDRYTAVVKMTDSGDRLK-LDQTHLETVIP 335
Query: 144 RRGGPVLVLYGRHKGVYGNL 163
G VLVL G ++G G L
Sbjct: 336 APGKRVLVLNGGYRGNEGTL 355
>sp|O60870|KIN17_HUMAN DNA/RNA-binding protein KIN17 OS=Homo sapiens GN=KIN PE=1 SV=2
Length = 393
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 84 WLRSHIRVRIISKELKSGRLYLKKGEVV-DVVGPTMCDISMDESGELIQGVDQDLLETAL 142
WL+ I V+II+K+L G Y KK +V +V+ + M +SG+ ++ +DQ LET +
Sbjct: 280 WLQPEIIVKIITKKL--GEKYHKKKAIVKEVIDKYTAVVKMIDSGDKLK-LDQTHLETVI 336
Query: 143 PRRGGPVLVLYGRHKGVYGNL 163
P G +LVL G ++G G L
Sbjct: 337 PAPGKRILVLNGGYRGNEGTL 357
>sp|A7M944|YCF1_CUSGR Putative membrane protein ycf1 OS=Cuscuta gronovii GN=ycf1 PE=3 SV=1
Length = 1673
Score = 33.9 bits (76), Expect = 0.68, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 32 KEKKKDELKKSGDRDNKHNQESRNSEKSEKQ-QANKRSRESERREDNYNYNVPWLRSHIR 90
K+K K E +K+ +N+ N E++N +KS+ + + NK + + E + + ++RS ++
Sbjct: 1385 KQKSKVENEKNKKTENQQNAETKNKQKSKTENEGNKETENQQNDESEDDPQLAYIRSFMK 1444
Query: 91 VRIISKELKSGRLYLKKG 108
++ +L+ ++ K G
Sbjct: 1445 KHLLF-QLRGESIFKKSG 1461
>sp|Q5HPC7|ODO2_STAEQ Dihydrolipoyllysine-residue succinyltransferase component of
2-oxoglutarate dehydrogenase complex OS=Staphylococcus
epidermidis (strain ATCC 35984 / RP62A) GN=odhB PE=3
SV=1
Length = 420
Score = 30.8 bits (68), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 38 ELKKSGDRDNKHNQESRNSEKSEKQQANKRSRESERREDNYNYNV---PWLRSHIR 90
++ S D N+ +Q+ EK +Q+N S ESE +DN + P R H R
Sbjct: 79 QVNTSNDSSNESSQKDEAKEKETPKQSNPNSSESENTQDNSQQRINATPSARRHAR 134
>sp|Q8CSL9|ODO2_STAES Dihydrolipoyllysine-residue succinyltransferase component of
2-oxoglutarate dehydrogenase complex OS=Staphylococcus
epidermidis (strain ATCC 12228) GN=odhB PE=3 SV=1
Length = 420
Score = 30.8 bits (68), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 38 ELKKSGDRDNKHNQESRNSEKSEKQQANKRSRESERREDNYNYNV---PWLRSHIR 90
++ S D N+ +Q+ EK +Q+N S ESE +DN + P R H R
Sbjct: 79 QVNTSNDSSNESSQKDEAKEKETPKQSNPNSSESENTQDNSQQRINATPSARRHAR 134
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.135 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,500,311
Number of Sequences: 539616
Number of extensions: 3697652
Number of successful extensions: 23872
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 349
Number of HSP's that attempted gapping in prelim test: 20138
Number of HSP's gapped (non-prelim): 3449
length of query: 203
length of database: 191,569,459
effective HSP length: 112
effective length of query: 91
effective length of database: 131,132,467
effective search space: 11933054497
effective search space used: 11933054497
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)