Query 044581
Match_columns 203
No_of_seqs 115 out of 260
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 07:50:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044581.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044581hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ckk_A KIN17; beta barrel, rib 100.0 5.5E-37 1.9E-41 243.4 13.5 117 77-195 7-127 (127)
2 1nz9_A Transcription antitermi 97.0 0.0023 7.8E-08 43.1 6.4 52 142-193 4-57 (58)
3 2e6z_A Transcription elongatio 96.9 0.00076 2.6E-08 46.2 3.8 52 141-194 6-59 (59)
4 2e70_A Transcription elongatio 96.6 0.0046 1.6E-07 44.3 5.8 49 143-193 18-66 (71)
5 3p8b_B Transcription antitermi 96.2 0.013 4.5E-07 46.1 7.0 55 142-196 91-147 (152)
6 2do3_A Transcription elongatio 95.7 0.021 7.1E-07 40.7 5.5 61 127-191 4-64 (69)
7 1vq8_T 50S ribosomal protein L 95.4 0.016 5.5E-07 45.3 4.5 34 144-177 44-77 (120)
8 2ftc_N Mitochondrial ribosomal 95.4 0.021 7.2E-07 42.9 4.9 31 146-176 1-31 (96)
9 3j21_U 50S ribosomal protein L 95.2 0.02 6.8E-07 44.8 4.5 33 144-176 47-79 (121)
10 3u5e_Y L33, YL33, 60S ribosoma 95.1 0.019 6.6E-07 45.2 4.2 33 144-176 51-83 (127)
11 2zjr_R 50S ribosomal protein L 95.0 0.02 6.9E-07 44.2 4.0 34 144-177 17-50 (115)
12 3v2d_Y 50S ribosomal protein L 94.8 0.025 8.4E-07 43.5 3.9 33 144-176 8-40 (110)
13 2jvv_A Transcription antitermi 94.7 0.039 1.3E-06 44.5 5.1 50 144-193 129-180 (181)
14 3r8s_U 50S ribosomal protein L 94.6 0.036 1.2E-06 42.0 4.4 32 144-176 5-36 (102)
15 4a17_S RPL26, 60S ribosomal pr 94.6 0.037 1.3E-06 44.1 4.5 33 144-176 50-82 (135)
16 3iz5_Y 60S ribosomal protein L 94.6 0.036 1.2E-06 44.9 4.5 33 144-176 50-82 (150)
17 2zkr_t 60S ribosomal protein L 94.3 0.038 1.3E-06 44.4 4.2 33 144-176 50-83 (145)
18 2jz2_A SSL0352 protein; SH3-li 92.0 0.54 1.8E-05 33.0 6.5 58 85-145 2-59 (66)
19 2qqr_A JMJC domain-containing 92.0 1.5 5.1E-05 33.9 9.8 89 99-194 17-113 (118)
20 3bbo_W Ribosomal protein L24; 90.1 0.042 1.4E-06 46.1 -0.8 33 144-176 70-102 (191)
21 2xhc_A Transcription antitermi 90.1 0.43 1.5E-05 43.0 5.8 51 143-193 299-351 (352)
22 1m1h_A Transcription antitermi 89.2 0.072 2.5E-06 45.8 0.0 54 140-193 192-247 (248)
23 2e70_A Transcription elongatio 87.2 1.4 4.9E-05 31.3 5.7 45 87-138 20-64 (71)
24 3kbg_A 30S ribosomal protein S 85.1 6.7 0.00023 33.1 9.8 80 83-169 76-165 (213)
25 2do3_A Transcription elongatio 84.4 2.6 8.7E-05 29.8 5.9 50 84-140 17-66 (69)
26 2xzm_W 40S ribosomal protein S 83.3 7.9 0.00027 33.7 9.7 45 132-176 165-213 (260)
27 2joy_A 50S ribosomal protein L 83.1 1.8 6.1E-05 32.0 4.9 51 84-139 3-55 (96)
28 2equ_A PHD finger protein 20-l 82.4 2 6.8E-05 30.4 4.7 43 100-146 22-64 (74)
29 2xdp_A Lysine-specific demethy 81.4 3.7 0.00013 32.0 6.2 90 99-195 18-115 (123)
30 3u5c_E RP5, S7, YS6, 40S ribos 81.2 3.6 0.00012 35.8 6.8 40 129-168 160-200 (261)
31 3izc_N 60S ribosomal protein R 80.5 2.5 8.5E-05 33.6 5.1 53 83-140 13-65 (138)
32 3j20_E 30S ribosomal protein S 80.4 4.4 0.00015 34.9 7.0 49 130-178 165-218 (243)
33 3iz6_D 40S ribosomal protein S 77.4 6.3 0.00021 34.4 7.1 39 130-168 161-200 (265)
34 3p8d_A Medulloblastoma antigen 76.3 6 0.00021 27.6 5.5 43 99-145 18-60 (67)
35 3h8z_A FragIle X mental retard 75.8 26 0.00087 27.2 11.5 85 87-179 4-100 (128)
36 4hcz_A PHD finger protein 1; p 74.6 10 0.00035 26.0 6.1 48 84-140 5-53 (58)
37 3qii_A PHD finger protein 20; 73.7 7.1 0.00024 28.6 5.5 43 99-145 33-75 (85)
38 3pnw_C Tudor domain-containing 73.4 14 0.00047 25.9 6.9 60 137-196 5-72 (77)
39 3iz5_N 60S ribosomal protein L 70.1 8.8 0.0003 30.2 5.7 34 84-122 6-39 (134)
40 2ckk_A KIN17; beta barrel, rib 69.9 8 0.00027 29.8 5.4 48 86-138 72-123 (127)
41 4a18_F RPL14; ribosome, eukary 69.1 12 0.00041 29.2 6.2 50 84-140 6-55 (126)
42 1qp2_A Protein (PSAE protein); 68.6 18 0.00061 25.6 6.4 59 85-146 2-66 (70)
43 3j21_5 50S ribosomal protein L 68.6 8.2 0.00028 27.8 4.8 35 85-124 4-38 (83)
44 4a4f_A SurviVal of motor neuro 68.1 24 0.00081 23.5 7.1 54 141-194 7-61 (64)
45 1ssf_A Transformation related 67.4 48 0.0016 26.7 9.8 92 100-196 21-122 (156)
46 1mhn_A SurviVal motor neuron p 65.6 13 0.00043 24.5 5.0 41 100-143 17-58 (59)
47 2xk0_A Polycomb protein PCL; t 65.4 9.7 0.00033 26.9 4.5 40 81-128 14-53 (69)
48 1nz9_A Transcription antitermi 64.3 22 0.00076 23.0 6.0 51 85-140 5-57 (58)
49 1g5v_A SurviVal motor neuron p 64.0 30 0.001 24.9 7.2 57 142-198 10-67 (88)
50 4hcz_A PHD finger protein 1; p 63.8 32 0.0011 23.5 7.1 50 145-195 6-55 (58)
51 2oqk_A Putative translation in 60.6 18 0.00063 27.3 5.7 66 100-168 31-96 (117)
52 2d9t_A Tudor domain-containing 59.4 41 0.0014 23.3 7.2 56 142-197 9-65 (78)
53 3p8b_B Transcription antitermi 59.2 24 0.00083 27.1 6.4 53 84-142 91-146 (152)
54 2d9t_A Tudor domain-containing 58.9 24 0.00083 24.5 5.8 42 100-144 23-65 (78)
55 2e6z_A Transcription elongatio 58.3 18 0.00061 24.0 4.7 48 85-139 8-57 (59)
56 2m0o_A PHD finger protein 1; t 55.7 16 0.00056 26.3 4.4 42 81-129 25-67 (79)
57 2eqj_A Metal-response element- 55.5 19 0.00066 25.1 4.6 28 99-128 25-53 (66)
58 1g5v_A SurviVal motor neuron p 54.6 21 0.00073 25.7 5.0 56 83-144 10-66 (88)
59 2xk0_A Polycomb protein PCL; t 54.1 38 0.0013 23.9 6.0 51 146-199 19-69 (69)
60 4a4f_A SurviVal of motor neuro 53.1 28 0.00097 23.1 5.1 40 99-141 21-61 (64)
61 2wac_A CG7008-PA; unknown func 52.7 30 0.001 27.3 6.1 88 107-196 6-104 (218)
62 3fdr_A Tudor and KH domain-con 52.5 26 0.00088 24.7 5.1 57 82-144 26-82 (94)
63 4a18_N RPL27, ribosomal protei 51.5 18 0.00062 28.8 4.5 29 84-117 4-32 (144)
64 3p8d_A Medulloblastoma antigen 49.5 62 0.0021 22.4 6.5 52 144-197 8-59 (67)
65 2ldm_A Uncharacterized protein 54.1 3.7 0.00013 29.7 0.0 38 100-141 19-56 (81)
66 2eqj_A Metal-response element- 47.6 68 0.0023 22.3 6.5 49 144-193 15-63 (66)
67 1ah9_A IF1, initiation factor 46.1 55 0.0019 22.1 5.8 57 107-163 9-66 (71)
68 3gzb_A Putative snoal-like pol 45.1 14 0.0005 29.5 2.9 44 87-130 91-135 (154)
69 3fdr_A Tudor and KH domain-con 41.8 80 0.0028 22.0 6.3 57 141-198 26-83 (94)
70 1d7q_A Translation initiation 40.7 71 0.0024 25.2 6.4 65 100-167 30-94 (143)
71 1jb0_E Photosystem 1 reaction 39.8 43 0.0015 23.9 4.4 36 144-179 2-42 (75)
72 2e5p_A Protein PHF1, PHD finge 39.7 80 0.0027 22.1 5.7 53 80-141 7-60 (68)
73 4a18_E RPL6; ribosome, eukaryo 37.8 73 0.0025 26.4 6.2 39 80-123 40-78 (191)
74 2equ_A PHD finger protein 20-l 37.7 96 0.0033 21.5 6.1 53 141-195 8-60 (74)
75 2e5q_A PHD finger protein 19; 37.4 69 0.0024 22.1 5.0 51 81-140 6-57 (63)
76 3pnw_C Tudor domain-containing 35.7 75 0.0026 22.0 5.2 42 99-143 30-72 (77)
77 3i4o_A Translation initiation 35.7 91 0.0031 22.1 5.7 60 106-165 16-76 (79)
78 2diq_A Tudor and KH domain-con 34.8 36 0.0012 24.6 3.6 57 81-143 30-86 (110)
79 2jvv_A Transcription antitermi 34.1 67 0.0023 25.2 5.3 52 83-140 126-180 (181)
80 2m0o_A PHD finger protein 1; t 33.6 1.2E+02 0.0043 21.7 6.1 45 146-191 30-74 (79)
81 1mhn_A SurviVal motor neuron p 33.2 98 0.0034 19.9 7.4 53 143-195 4-57 (59)
82 2dgy_A MGC11102 protein; EIF-1 32.7 1.5E+02 0.0053 22.1 7.4 49 107-155 18-66 (111)
83 4a18_N RPL27, ribosomal protei 32.5 49 0.0017 26.3 4.2 24 146-169 8-31 (144)
84 2eqk_A Tudor domain-containing 32.2 61 0.0021 23.5 4.3 57 140-197 19-76 (85)
85 2wac_A CG7008-PA; unknown func 32.1 70 0.0024 25.1 5.2 54 84-144 52-105 (218)
86 1ib8_A Conserved protein SP14. 31.7 65 0.0022 25.4 4.9 47 146-194 104-156 (164)
87 2g3r_A Tumor suppressor P53-bi 31.5 1.8E+02 0.0062 22.5 10.2 65 100-169 18-84 (123)
88 3qii_A PHD finger protein 20; 31.4 1.5E+02 0.005 21.5 6.5 53 142-196 21-73 (85)
89 3iz5_N 60S ribosomal protein L 30.8 37 0.0013 26.6 3.2 31 144-175 8-38 (134)
90 2hqx_A P100 CO-activator tudor 29.9 34 0.0012 27.9 3.0 55 141-196 64-118 (246)
91 2e5p_A Protein PHF1, PHD finge 28.9 1.5E+02 0.0051 20.7 5.7 51 146-197 13-63 (68)
92 3s6w_A Tudor domain-containing 28.7 1.1E+02 0.0038 19.2 6.5 49 144-192 3-52 (54)
93 2joy_A 50S ribosomal protein L 28.5 37 0.0013 24.7 2.7 31 144-175 5-35 (96)
94 3izc_N 60S ribosomal protein R 27.9 43 0.0015 26.4 3.1 31 144-175 16-46 (138)
95 3bdl_A Staphylococcal nuclease 27.8 87 0.003 29.0 5.7 91 107-198 366-466 (570)
96 4a18_F RPL14; ribosome, eukary 27.1 69 0.0024 24.8 4.1 29 146-175 10-38 (126)
97 1jb0_E Photosystem 1 reaction 26.3 1.8E+02 0.006 20.7 6.2 56 87-145 3-72 (75)
98 4b9w_A TDRD1, tudor domain-con 25.7 1E+02 0.0036 24.3 5.2 42 100-144 79-120 (201)
99 2hqx_A P100 CO-activator tudor 25.7 81 0.0028 25.6 4.6 41 100-143 78-118 (246)
100 1jt8_A EIF-1A, probable transl 24.1 76 0.0026 23.5 3.7 61 107-167 23-84 (102)
101 3j21_5 50S ribosomal protein L 24.0 59 0.002 23.2 3.0 31 144-175 5-35 (83)
102 2eqk_A Tudor domain-containing 23.9 1.1E+02 0.0036 22.2 4.3 58 81-144 19-76 (85)
103 1vq8_T 50S ribosomal protein L 23.7 1.6E+02 0.0053 22.5 5.5 32 85-121 43-75 (120)
104 3j21_U 50S ribosomal protein L 23.4 2.1E+02 0.0071 21.8 6.2 39 71-115 33-71 (121)
105 4b9x_A TDRD1, tudor domain-con 21.2 1.2E+02 0.004 24.5 4.7 42 100-144 79-120 (226)
No 1
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=100.00 E-value=5.5e-37 Score=243.44 Aligned_cols=117 Identities=27% Similarity=0.364 Sum_probs=108.4
Q ss_pred ccCCCCCcccCceEEEEeecccCCCceecceEEEEEecCCCeEEEEecCCCceEeccccCceeeecCCCCCcEEEEeccc
Q 044581 77 NYNYNVPWLRSHIRVRIISKELKSGRLYLKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLETALPRRGGPVLVLYGRH 156 (203)
Q Consensus 77 ~~~~~~~Wl~~~I~VRIidk~~~~Gk~y~kKGvV~dV~~~~~c~V~l~d~g~~v~~V~q~~LETVIPk~g~~V~VV~G~~ 156 (203)
+.+++.+||+|+|+|||++++|++| ||++||+|++|+++++|+|+|+++|+.+ .|+|+|||||||+.|++||||+|+|
T Consensus 7 ~~~~~~~Wl~~~I~Vrii~k~~~~g-~y~~KgvV~~V~~~~~c~V~l~~~g~~v-~v~q~~LETViP~~g~~V~Iv~G~~ 84 (127)
T 2ckk_A 7 RTARTDYWLQPEIIVKIITKKLGEK-YHKKKAIVKEVIDKYTAVVKMIDSGDKL-KLDQTHLETVIPAPGKRILVLNGGY 84 (127)
T ss_dssp -CCCCSCCCCTTBEEEECCSTTCGG-GTTCEEEEEEEETTTEEEEEETTTCCEE-EEEGGGEEECCCCTTCEEEECSSTT
T ss_pred ccCCCCCcccCCeEEEEEEccCCCc-ccCceEEEEEecCCCeEEEEECCCCCEE-EEchHHcEEecCCCCCEEEEEeccc
Confidence 4567899999999999999999777 9999999999999999999999999988 8999999999999999999999999
Q ss_pred cCcEEEEEEeeCCCceEEEEECC---CCcEE-Eeeccchhccc
Q 044581 157 KGVYGNLVDRDLDRETGVVRDAD---THELV-NVKLEQIAEYI 195 (203)
Q Consensus 157 rG~~G~Li~iD~~k~~a~V~L~~---~~~i~-~l~~ddvck~~ 195 (203)
||++|+|+++|.++++|+|+|++ ++.++ .|+|||||+|+
T Consensus 85 rG~~g~L~~id~~~~~~~V~l~~~~~~~~~v~~l~~ddi~k~~ 127 (127)
T 2ckk_A 85 RGNEGTLESINEKTFSATIVIETGPLKGRRVEGIQYEDISKLA 127 (127)
T ss_dssp TTCEEEEEEEEGGGTEEEEEECSSTTTTCEEEEEEGGGEEEBC
T ss_pred CCcEEEEEEEeCCCcEEEEEEccCCCCCCEEEeeCHHHhhccC
Confidence 99999999999999999999986 25455 69999999985
No 2
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=96.95 E-value=0.0023 Score=43.06 Aligned_cols=52 Identities=19% Similarity=0.203 Sum_probs=41.6
Q ss_pred cCCCCCcEEEEeccccCcEEEEEEeeCCCceEEEEECCCCc--EEEeeccchhc
Q 044581 142 LPRRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVRDADTHE--LVNVKLEQIAE 193 (203)
Q Consensus 142 IPk~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~L~~~~~--i~~l~~ddvck 193 (203)
....|+.|.|+.|.+.|..|++.++|.++..+.|.++--+. .+.|+|++|-+
T Consensus 4 ~~~~Gd~V~V~~Gpf~g~~g~v~~v~~~k~~v~V~v~~~Gr~t~v~l~~~~vek 57 (58)
T 1nz9_A 4 AFREGDQVRVVSGPFADFTGTVTEINPERGKVKVMVTIFGRETPVELDFSQVVK 57 (58)
T ss_dssp SCCTTCEEEECSGGGTTCEEEEEEEETTTTEEEEEEESSSSEEEEEECGGGEEE
T ss_pred ccCCCCEEEEeecCCCCcEEEEEEEcCCCCEEEEEEEeCCCEEEEEECHHHEEE
Confidence 45679999999999999999999999988788777655333 35688887654
No 3
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.93 E-value=0.00076 Score=46.17 Aligned_cols=52 Identities=15% Similarity=0.236 Sum_probs=42.2
Q ss_pred ecCCCCCcEEEEeccccCcEEEEEEeeCCCceEEEEEC--CCCcEEEeeccchhcc
Q 044581 141 ALPRRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVRDA--DTHELVNVKLEQIAEY 194 (203)
Q Consensus 141 VIPk~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~L~--~~~~i~~l~~ddvck~ 194 (203)
+-+..|+.|.|+.|+++|..|++.++|.+ .+.|.+. .-...+.|+|.+|.|+
T Consensus 6 ~~f~~GD~V~V~~Gpf~g~~G~V~evd~e--~v~V~v~~fg~~tpvel~~~qv~K~ 59 (59)
T 2e6z_A 6 SGFQPGDNVEVCEGELINLQGKILSVDGN--KITIMPKHEDLKDMLEFPAQELRKY 59 (59)
T ss_dssp SSCCTTSEEEECSSTTTTCEEEECCCBTT--EEEEEECCSSCCSCEEEETTTEEEC
T ss_pred ccCCCCCEEEEeecCCCCCEEEEEEEeCC--EEEEEEEecCCCceEEEcHHHEEEC
Confidence 34577999999999999999999999987 6777664 2234678999998775
No 4
>2e70_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.57 E-value=0.0046 Score=44.34 Aligned_cols=49 Identities=22% Similarity=0.228 Sum_probs=42.7
Q ss_pred CCCCCcEEEEeccccCcEEEEEEeeCCCceEEEEECCCCcEEEeeccchhc
Q 044581 143 PRRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVRDADTHELVNVKLEQIAE 193 (203)
Q Consensus 143 Pk~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~L~~~~~i~~l~~ddvck 193 (203)
|..|..|.|..|.|+|..|.+.+.+.. .|.|+|.+...++.++.++|+-
T Consensus 18 ~liGktV~I~kGpyKG~~GiVkd~t~~--~~RVELhs~~K~VtV~r~~l~~ 66 (71)
T 2e70_A 18 ELIGQTVRISQGPYKGYIGVVKDATES--TARVELHSTCQTISVDRQRLTT 66 (71)
T ss_dssp SSTTSEEEECSSTTTTCEEEEEEECSS--CEEEEESSSCCEEEECTTTEEE
T ss_pred ccCCCEEEEeccCCCCeEEEEEECCCC--eEEEEecCCceEEEEEhhhccc
Confidence 345788999999999999999999987 7999999888889999888843
No 5
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=96.16 E-value=0.013 Score=46.12 Aligned_cols=55 Identities=24% Similarity=0.163 Sum_probs=46.9
Q ss_pred cCCCCCcEEEEeccccCcEEEEEEeeCCCceEEEEECCCC--cEEEeeccchhcccC
Q 044581 142 LPRRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVRDADTH--ELVNVKLEQIAEYIG 196 (203)
Q Consensus 142 IPk~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~L~~~~--~i~~l~~ddvck~~g 196 (203)
-+..|+.|.|+.|.++|..|.+.++|.++..+.|.+..-+ .-+.|+|++|-++..
T Consensus 91 ~~~~Gd~VrI~~Gpf~g~~g~V~~vd~~k~~v~V~v~~~gr~tpvel~~~~v~~i~~ 147 (152)
T 3p8b_B 91 GLEPGDLVEVIAGPFKGQKAKVVKIDESKDEVVVQFIDAIVPIPVTIKGDYVRLISK 147 (152)
T ss_dssp TCCTTCEEEECSSTTTTCEEEEEEEETTTTEEEEEESSCSSCCEEEEEGGGEEEEEC
T ss_pred cCCCCCEEEEeeecCCCCEEEEEEEeCCCCEEEEEEEecceeEEEEECHHHEEEecc
Confidence 3466999999999999999999999999999999987633 357899999988754
No 6
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=95.69 E-value=0.021 Score=40.73 Aligned_cols=61 Identities=20% Similarity=0.186 Sum_probs=39.9
Q ss_pred CceEeccccCceeeecCCCCCcEEEEeccccCcEEEEEEeeCCCceEEEEECCCCcEEEeeccch
Q 044581 127 GELIQGVDQDLLETALPRRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVRDADTHELVNVKLEQI 191 (203)
Q Consensus 127 g~~v~~V~q~~LETVIPk~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~L~~~~~i~~l~~ddv 191 (203)
|..+ .++.+.|.-.. +.|+.|+|+.|.|.|.+|.++.++.+ .+++--+.+..-+.+.-.||
T Consensus 4 ~~~i-~~p~~~LrK~F-~~GDHVkVi~G~~~getGlVV~v~~d--~v~v~SD~t~~Ei~V~~~dL 64 (69)
T 2do3_A 4 GSSG-EFPAQELRKYF-KMGDHVKVIAGRFEGDTGLIVRVEEN--FVILFSDLTMHELKVLPRDL 64 (69)
T ss_dssp CSCC-CCCCCCCCSSC-CTTCEEEESSSTTTTCEEEEEEECSS--CEEEEESSSCSEEEECTTSE
T ss_pred CcEE-EEcHHHceeec-cCCCeEEEeccEEcCceEEEEEEeCC--EEEEEeCCCCCEEEEEhHHh
Confidence 4444 45555554333 34899999999999999999999977 55553333443344444444
No 7
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=95.42 E-value=0.016 Score=45.27 Aligned_cols=34 Identities=35% Similarity=0.503 Sum_probs=31.0
Q ss_pred CCCCcEEEEeccccCcEEEEEEeeCCCceEEEEE
Q 044581 144 RRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVRD 177 (203)
Q Consensus 144 k~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~L 177 (203)
+.|+.|+||.|.++|..|+++.++..++.++|+-
T Consensus 44 kkGD~V~Vi~G~dKGk~GkV~~V~~k~~~V~VEg 77 (120)
T 1vq8_T 44 NAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVED 77 (120)
T ss_dssp CTTCEEEECSSTTTTCEEEEEEEETTTTEEEETT
T ss_pred cCCCEEEEEecCCCCCEEEEEEEECCCCEEEEeC
Confidence 5699999999999999999999999988888753
No 8
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N
Probab=95.37 E-value=0.021 Score=42.88 Aligned_cols=31 Identities=32% Similarity=0.381 Sum_probs=28.7
Q ss_pred CCcEEEEeccccCcEEEEEEeeCCCceEEEE
Q 044581 146 GGPVLVLYGRHKGVYGNLVDRDLDRETGVVR 176 (203)
Q Consensus 146 g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~ 176 (203)
|+.|+||.|.++|..|++++++..++.++|+
T Consensus 1 GD~V~Vi~GkdKGk~GkV~~V~~~~~~ViVe 31 (96)
T 2ftc_N 1 GDTVEILEGKDAGKQGKVVQVIRQRNWVVVG 31 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEECCCCEEEEe
Confidence 6899999999999999999999998888875
No 9
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=95.23 E-value=0.02 Score=44.78 Aligned_cols=33 Identities=36% Similarity=0.464 Sum_probs=30.0
Q ss_pred CCCCcEEEEeccccCcEEEEEEeeCCCceEEEE
Q 044581 144 RRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVR 176 (203)
Q Consensus 144 k~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~ 176 (203)
+.|+.|+||.|.++|..|+++.++..++.++|+
T Consensus 47 kkGD~V~Vi~GkdKGk~GkV~~V~~k~~~V~VE 79 (121)
T 3j21_U 47 RVGDKVRIMRGDYKGHEGKVVEVDLKRYRIYVE 79 (121)
T ss_dssp CSSSEEEECSSSCSSEEEEEEEEETTTTEEEET
T ss_pred ccCCEEEEeecCCCCcEeEEEEEEecCCEEEEe
Confidence 568999999999999999999999998887764
No 10
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=95.11 E-value=0.019 Score=45.25 Aligned_cols=33 Identities=30% Similarity=0.294 Sum_probs=30.5
Q ss_pred CCCCcEEEEeccccCcEEEEEEeeCCCceEEEE
Q 044581 144 RRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVR 176 (203)
Q Consensus 144 k~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~ 176 (203)
+.|+.|+||.|.++|..|+++.++..++.++|+
T Consensus 51 kkgD~V~Vi~GkdKGk~GkV~~V~~kk~~V~VE 83 (127)
T 3u5e_Y 51 RRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVD 83 (127)
T ss_dssp CTTCEEEECSSTTTTCEEEEEEEEGGGTEEEEE
T ss_pred cCCCEEEEeecCCCCccceEEEEECCCCEEEEe
Confidence 678999999999999999999999998888876
No 11
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=95.03 E-value=0.02 Score=44.24 Aligned_cols=34 Identities=32% Similarity=0.500 Sum_probs=30.9
Q ss_pred CCCCcEEEEeccccCcEEEEEEeeCCCceEEEEE
Q 044581 144 RRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVRD 177 (203)
Q Consensus 144 k~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~L 177 (203)
+.|+.|+||.|.++|..|++++++.+++.++|+-
T Consensus 17 kkGD~V~Vi~GkdKGk~GkV~~V~~~~~~V~VEG 50 (115)
T 2zjr_R 17 KKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEG 50 (115)
T ss_dssp CTTSEEECCSSSSTTCEEEEEEEETTTTEEEESS
T ss_pred cCCCEEEEeEcCCCCcEEEEEEEECCCCEEEEeC
Confidence 4589999999999999999999999988888763
No 12
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=94.82 E-value=0.025 Score=43.53 Aligned_cols=33 Identities=27% Similarity=0.408 Sum_probs=30.0
Q ss_pred CCCCcEEEEeccccCcEEEEEEeeCCCceEEEE
Q 044581 144 RRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVR 176 (203)
Q Consensus 144 k~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~ 176 (203)
+.|+.|+||.|.++|..|++++++..++.++|+
T Consensus 8 kkGD~V~Vi~GkdKGk~GkV~~V~~~~~~ViVE 40 (110)
T 3v2d_Y 8 KKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVE 40 (110)
T ss_dssp CTTSEEEECSSTTTTCEEEEEEEEGGGTEEEET
T ss_pred CCCCEEEEeEcCCCCeEeEEEEEECCCCEEEEe
Confidence 468999999999999999999999998888765
No 13
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=94.70 E-value=0.039 Score=44.47 Aligned_cols=50 Identities=18% Similarity=0.193 Sum_probs=38.7
Q ss_pred CCCCcEEEEeccccCcEEEEEEeeCCCceEEEEEC--CCCcEEEeeccchhc
Q 044581 144 RRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVRDA--DTHELVNVKLEQIAE 193 (203)
Q Consensus 144 k~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~L~--~~~~i~~l~~ddvck 193 (203)
..|+.|.|+.|.+.|..|++.++|.++..+.|.+. .....+.|+|++|-+
T Consensus 129 ~~Gd~V~V~~GPf~g~~G~v~~v~~~k~r~~V~v~ifgr~t~vel~~~qvek 180 (181)
T 2jvv_A 129 EPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 (181)
T ss_dssp CTTEEEEECSSTTTTEEEEEEEEETTTTEEEEEEEETTEEEEEEECTTTEEE
T ss_pred CCCCEEEEeccCCCCcEEEEEEEeCCCCEEEEEEEECCCCEEEEECHHHEEE
Confidence 46899999999999999999999988767755543 322345688887754
No 14
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=94.62 E-value=0.036 Score=42.04 Aligned_cols=32 Identities=31% Similarity=0.437 Sum_probs=28.8
Q ss_pred CCCCcEEEEeccccCcEEEEEEeeCCCceEEEE
Q 044581 144 RRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVR 176 (203)
Q Consensus 144 k~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~ 176 (203)
+.|+.|+||.|.++|..|++++++.+ +.++|+
T Consensus 5 kkGD~V~Vi~GkdKGk~GkV~~V~~~-~~ViVe 36 (102)
T 3r8s_U 5 RRDDEVIVLTGKDKGKRGKVKNVLSS-GKVIVE 36 (102)
T ss_dssp CSSCEEEECSSSSTTCEEEEEEEETT-TEEEET
T ss_pred cCCCEEEEeEcCCCCeeeEEEEEEeC-CEEEEe
Confidence 46899999999999999999999998 787765
No 15
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=94.58 E-value=0.037 Score=44.07 Aligned_cols=33 Identities=24% Similarity=0.327 Sum_probs=30.0
Q ss_pred CCCCcEEEEeccccCcEEEEEEeeCCCceEEEE
Q 044581 144 RRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVR 176 (203)
Q Consensus 144 k~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~ 176 (203)
+.|+.|+||.|.++|..|+++.++..++.++|+
T Consensus 50 kkgD~V~Vi~GkdKGk~GkV~~V~~kk~~V~VE 82 (135)
T 4a17_S 50 RKDDEVLIVRGKFKGNKGKVTQVYRKKWAIHVE 82 (135)
T ss_dssp CTTCEEEECSSTTTTCEEEEEEEETTTTEEEET
T ss_pred cCCCEEEEeecCCCCceeeEEEEEcCCCEEEEe
Confidence 568999999999999999999999998887764
No 16
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=94.57 E-value=0.036 Score=44.87 Aligned_cols=33 Identities=30% Similarity=0.259 Sum_probs=30.0
Q ss_pred CCCCcEEEEeccccCcEEEEEEeeCCCceEEEE
Q 044581 144 RRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVR 176 (203)
Q Consensus 144 k~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~ 176 (203)
+.|+.|+||.|.++|..|+++.++..++.++|+
T Consensus 50 kKGD~V~Vi~GkdKGk~GkVl~V~~kk~~V~VE 82 (150)
T 3iz5_Y 50 RKDDEVQVVRGSYKGREGKVVQVYRRRWVIHVE 82 (150)
T ss_dssp CSSSEEEECSSTTTTCEEEEEEEETTTTEEEET
T ss_pred CCCCEEEEeecCCCCccceEEEEEcCCCEEEEe
Confidence 668999999999999999999999998887764
No 17
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=94.34 E-value=0.038 Score=44.41 Aligned_cols=33 Identities=24% Similarity=0.292 Sum_probs=30.2
Q ss_pred CCCCcEEEEeccccCcE-EEEEEeeCCCceEEEE
Q 044581 144 RRGGPVLVLYGRHKGVY-GNLVDRDLDRETGVVR 176 (203)
Q Consensus 144 k~g~~V~VV~G~~rG~~-G~Li~iD~~k~~a~V~ 176 (203)
+.|+.|+||.|.++|.. |+++.++..++.++|.
T Consensus 50 kkGD~V~Vi~GkdKGk~~GkV~~V~~k~~~V~VE 83 (145)
T 2zkr_t 50 RKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIE 83 (145)
T ss_dssp CTTCEEEECSSTTTTCCSEEEEEEETTTTEEEET
T ss_pred CCCCEEEEeecCCCCcceeEEEEEECCCCEEEEe
Confidence 56899999999999999 9999999998888775
No 18
>2jz2_A SSL0352 protein; SH3-like, synechocystis SP. PCC 6803, targe PSI, protein structure initiative, northeast structural GEN consortium, NESG; NMR {Synechocystis SP} PDB: 3c4s_A
Probab=92.02 E-value=0.54 Score=33.04 Aligned_cols=58 Identities=16% Similarity=0.099 Sum_probs=42.8
Q ss_pred ccCceEEEEeecccCCCceecceEEEEEecCCCeEEEEecCCCceEeccccCceeeecCCC
Q 044581 85 LRSHIRVRIISKELKSGRLYLKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLETALPRR 145 (203)
Q Consensus 85 l~~~I~VRIidk~~~~Gk~y~kKGvV~dV~~~~~c~V~l~d~g~~v~~V~q~~LETVIPk~ 145 (203)
+.||..|+|++- +.-||+-.|.|..|.+...+.+.=..+=+.+..+.-+.||.+-+..
T Consensus 2 ilPG~~V~V~np---~~~Yy~y~G~VQRvsdgkaaVLFEGGnWDKLVTf~L~eLe~~~~~~ 59 (66)
T 2jz2_A 2 IFPGATVRVTNV---DDTYYRFEGLVQRVSDGKAAVLFENGNWDKLVTFRLSELEAVKPIL 59 (66)
T ss_dssp CCTTCEEEECCT---TSTTBTCEEEEEEEETTEEEEEEESSSCEEEEEEESTTEEECCCCC
T ss_pred ccCCCEEEEeCC---CCcccceeEEEEEecCCcEEEEecCCCceeEEEEEhhHceeccccc
Confidence 569999999976 5689999999999996555544433332445589999999876543
No 19
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=91.97 E-value=1.5 Score=33.95 Aligned_cols=89 Identities=20% Similarity=0.282 Sum_probs=56.8
Q ss_pred CCCceecceEEEEEecCCCeEEEEecCCCceEeccccCceee------ecCCCCCcEEEEe--ccccCcEEEEEEeeCCC
Q 044581 99 KSGRLYLKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLET------ALPRRGGPVLVLY--GRHKGVYGNLVDRDLDR 170 (203)
Q Consensus 99 ~~Gk~y~kKGvV~dV~~~~~c~V~l~d~g~~v~~V~q~~LET------VIPk~g~~V~VV~--G~~rG~~G~Li~iD~~k 170 (203)
++|+|| +|.|+++.....|.|.++|+ ....++..+.+.. =.|..|..|.|.. |.. .-|+.++.....
T Consensus 17 ~ngryy--~~~V~~~~~~~~y~V~F~Dg-S~s~dl~peDIvs~dc~~~GpP~~G~~V~V~W~DG~~--y~a~f~g~~~~~ 91 (118)
T 2qqr_A 17 KNGRFY--QCEVVRLTTETFYEVNFDDG-SFSDNLYPEDIVSQDCLQFGPPAEGEVVQVRWTDGQV--YGAKFVASHPIQ 91 (118)
T ss_dssp TTSSEE--EEEEEEEEEEEEEEEEETTS-CEEEEECGGGBCSSCHHHHCCCCTTCEEEEECTTSCE--EEEEEEEEEEEE
T ss_pred CCCCEE--eEEEEEEeeEEEEEEEcCCC-CccCCCCHhhcccccccccCCCCCCCEEEEEcCCCCE--eeeEEeceeEEE
Confidence 389999 89999998778889998854 3333455444432 3788899999985 432 224444433321
Q ss_pred ceEEEEECCCCcEEEeeccchhcc
Q 044581 171 ETGVVRDADTHELVNVKLEQIAEY 194 (203)
Q Consensus 171 ~~a~V~L~~~~~i~~l~~ddvck~ 194 (203)
.-.|.++ |+..+.++=++|.-+
T Consensus 92 -~Y~V~fe-Dgs~~~~kR~~iyt~ 113 (118)
T 2qqr_A 92 -MYQVEFE-DGSQLVVKRDDVYTL 113 (118)
T ss_dssp -EEEEEET-TSCEEEECGGGEEET
T ss_pred -EEEEEEC-CCCEEEEcHHHeecc
Confidence 3346665 456777777777644
No 20
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=90.14 E-value=0.042 Score=46.07 Aligned_cols=33 Identities=24% Similarity=0.417 Sum_probs=29.6
Q ss_pred CCCCcEEEEeccccCcEEEEEEeeCCCceEEEE
Q 044581 144 RRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVR 176 (203)
Q Consensus 144 k~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~ 176 (203)
+.||.|+||.|.++|..|+++.++.+++.++|+
T Consensus 70 kKGD~V~VIaGkDKGK~GkVl~V~~k~~rViVE 102 (191)
T 3bbo_W 70 KVGDTVKVISGGEKGKIGEISKIHKHNSTVIIK 102 (191)
T ss_dssp CCSSCEEECSSSSTTCCCSCCCCCSSSCCCCCS
T ss_pred ecCCEEEEeecCCCCceEEEEEEECCCCEEEEe
Confidence 469999999999999999999999988777764
No 21
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=90.08 E-value=0.43 Score=42.96 Aligned_cols=51 Identities=16% Similarity=0.169 Sum_probs=40.1
Q ss_pred CCCCCcEEEEeccccCcEEEEEEeeCCCceEEEEECCCC--cEEEeeccchhc
Q 044581 143 PRRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVRDADTH--ELVNVKLEQIAE 193 (203)
Q Consensus 143 Pk~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~L~~~~--~i~~l~~ddvck 193 (203)
...|+.|.|+.|.+.|..|++.++|.++..+.|.+.--+ ..+.|+|++|-+
T Consensus 299 f~~Gd~VrV~~GPF~G~~G~V~evd~ek~rv~V~V~ifGR~tpVeL~~~qVek 351 (352)
T 2xhc_A 299 FKVGDMVKIISGPFEDFAGVIKEIDPERQELKVNVTIFGRETPVVLHVSEVEK 351 (352)
T ss_dssp CCTTCEEEECSSTTTTCEEEEEEEETTTTEEEEEEEETTEEEEEEEEGGGEEC
T ss_pred CCCCCEEEEeccCCCCcEEEEEEEcCCCCEEEEEEEECCCcEEEEEchHHEEE
Confidence 357999999999999999999999998777766654322 345788888754
No 22
>1m1h_A Transcription antitermination protein NUSG; transcription termination, RNP motif, immunoglobulin fold, nucleic acid interaction; 1.95A {Aquifex aeolicus} SCOP: b.114.1.1 d.58.42.1 PDB: 1m1g_A 1npp_A 1npr_A
Probab=89.19 E-value=0.072 Score=45.85 Aligned_cols=54 Identities=15% Similarity=0.175 Sum_probs=0.0
Q ss_pred eecCCCCCcEEEEeccccCcEEEEEEeeCCCceEEEEE--CCCCcEEEeeccchhc
Q 044581 140 TALPRRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVRD--ADTHELVNVKLEQIAE 193 (203)
Q Consensus 140 TVIPk~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~L--~~~~~i~~l~~ddvck 193 (203)
.+.+..|+.|+|+.|.+.|..|++.++|.++..+.|.+ ......+.|+|++|-+
T Consensus 192 ~~~~~~Gd~V~I~~Gpf~g~~G~v~ev~~~k~~~~V~v~ifgr~tpv~l~~~~vek 247 (248)
T 1m1h_A 192 KVEFEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTVMISIFGRMTPVELDFDQVEK 247 (248)
T ss_dssp --------------------------------------------------------
T ss_pred cccCCCCCEEEEeccCCCCcEEEEEEEeCCCCEEEEEEEeCCCcEEEEEcHHHEEe
Confidence 44566799999999999999999999998876666554 3333346788887754
No 23
>2e70_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.20 E-value=1.4 Score=31.30 Aligned_cols=45 Identities=24% Similarity=0.263 Sum_probs=37.7
Q ss_pred CceEEEEeecccCCCceecceEEEEEecCCCeEEEEecCCCceEeccccCce
Q 044581 87 SHIRVRIISKELKSGRLYLKKGEVVDVVGPTMCDISMDESGELIQGVDQDLL 138 (203)
Q Consensus 87 ~~I~VRIidk~~~~Gk~y~kKGvV~dV~~~~~c~V~l~d~g~~v~~V~q~~L 138 (203)
.+=.|+|. .|.|-+..|+|+|+. ...|.|+|......| +|+-++|
T Consensus 20 iGktV~I~-----kGpyKG~~GiVkd~t-~~~~RVELhs~~K~V-tV~r~~l 64 (71)
T 2e70_A 20 IGQTVRIS-----QGPYKGYIGVVKDAT-ESTARVELHSTCQTI-SVDRQRL 64 (71)
T ss_dssp TTSEEEEC-----SSTTTTCEEEEEEEC-SSCEEEEESSSCCEE-EECTTTE
T ss_pred CCCEEEEe-----ccCCCCeEEEEEECC-CCeEEEEecCCceEE-EEEhhhc
Confidence 46678888 678888999999997 578999998777777 7888888
No 24
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=85.10 E-value=6.7 Score=33.14 Aligned_cols=80 Identities=11% Similarity=0.073 Sum_probs=49.8
Q ss_pred CcccCce----EEEEeecccCCCceecceEEEEEecCCCeEEEEecC----C-CceEeccccCceeeecC-CCCCcEEEE
Q 044581 83 PWLRSHI----RVRIISKELKSGRLYLKKGEVVDVVGPTMCDISMDE----S-GELIQGVDQDLLETALP-RRGGPVLVL 152 (203)
Q Consensus 83 ~Wl~~~I----~VRIidk~~~~Gk~y~kKGvV~dV~~~~~c~V~l~d----~-g~~v~~V~q~~LETVIP-k~g~~V~VV 152 (203)
.|+.++- ..||.++ +.+++|+..=+.-++.. +..++ . +.++.+++...+--.+| ..|.-+||.
T Consensus 76 ~~I~~eea~~KLcKV~~k------~~~~~G~~~l~~HDGrt-i~~pd~~ik~~Dtv~idl~~~kI~d~ikf~~G~l~mvt 148 (213)
T 3kbg_A 76 MKETKERASMKLLKVRSK------VIAPGNRIQLGTHDGRT-FITDDKSIKVGDVLAVSVPDMKISEIIKMQPGNKAYIT 148 (213)
T ss_dssp EECCTTGGGEEEEEEEEE------EEEGGGEEEEEETTSCE-EEECCTTCCTTCEEEEETTTCCEEEEECCSTTCEEEEC
T ss_pred EEeChhHccceEEEEEEE------EEecCCeeEEEecCccE-EEcCCCCcccCCEEEEECCCCceeeEEEcCCCCEEEEE
Confidence 3655542 3566543 44566766666544433 33332 1 23343555555555565 557889999
Q ss_pred eccccCcEEEEEEeeCC
Q 044581 153 YGRHKGVYGNLVDRDLD 169 (203)
Q Consensus 153 ~G~~rG~~G~Li~iD~~ 169 (203)
.|.+.|.+|++.++..-
T Consensus 149 gG~n~GriG~I~~ie~~ 165 (213)
T 3kbg_A 149 AGSHVNQTGTISKIEAK 165 (213)
T ss_dssp SSTTTTCEEEEEEECCC
T ss_pred CCCcceEEEEEEEEEEc
Confidence 99999999999999754
No 25
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=84.44 E-value=2.6 Score=29.83 Aligned_cols=50 Identities=20% Similarity=0.204 Sum_probs=40.7
Q ss_pred cccCceEEEEeecccCCCceecceEEEEEecCCCeEEEEecCCCceEeccccCceee
Q 044581 84 WLRSHIRVRIISKELKSGRLYLKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLET 140 (203)
Q Consensus 84 Wl~~~I~VRIidk~~~~Gk~y~kKGvV~dV~~~~~c~V~l~d~g~~v~~V~q~~LET 140 (203)
-+.+|=.|||+ +|+|-+..|.|+.|. +..|++..+-+.+.+ .|...+|+-
T Consensus 17 ~F~~GDHVkVi-----~G~~~getGlVV~v~-~d~v~v~SD~t~~Ei-~V~~~dL~~ 66 (69)
T 2do3_A 17 YFKMGDHVKVI-----AGRFEGDTGLIVRVE-ENFVILFSDLTMHEL-KVLPRDLQL 66 (69)
T ss_dssp SCCTTCEEEES-----SSTTTTCEEEEEEEC-SSCEEEEESSSCSEE-EECTTSEEE
T ss_pred eccCCCeEEEe-----ccEEcCceEEEEEEe-CCEEEEEeCCCCCEE-EEEhHHhhh
Confidence 46778899999 789999999999997 567778888777777 677777753
No 26
>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W
Probab=83.27 E-value=7.9 Score=33.66 Aligned_cols=45 Identities=13% Similarity=0.164 Sum_probs=30.8
Q ss_pred ccccCceeeecC-CCCCcEEEEeccccCcEEEEEEeeCC---CceEEEE
Q 044581 132 GVDQDLLETALP-RRGGPVLVLYGRHKGVYGNLVDRDLD---RETGVVR 176 (203)
Q Consensus 132 ~V~q~~LETVIP-k~g~~V~VV~G~~rG~~G~Li~iD~~---k~~a~V~ 176 (203)
+++...+.-.+| ..|.-+||..|.|.|.+|++.++..- ...+.|+
T Consensus 165 dl~~~kI~d~ikfe~G~l~mvtgG~n~GriG~I~~~e~~~gs~~iV~vk 213 (260)
T 2xzm_W 165 DLVNNKIENFAHLESGNVCYIQQGNNIGRVGIIQHIEKHQGSFDICHVK 213 (260)
T ss_dssp ETTTTEEECCCBCCSSCEEEECSSTTTTCEEEEEEEECCCSSCCEEEEE
T ss_pred eCCCCceeeEEEecCCCEEEEECCccceeEEEEEEEEecCCCCcEEEEE
Confidence 455334445566 44678999999999999999986532 2345554
No 27
>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A
Probab=83.08 E-value=1.8 Score=31.99 Aligned_cols=51 Identities=18% Similarity=0.113 Sum_probs=34.7
Q ss_pred cccCceEEEEeecccCCCceecceEEEEEecCCCeEEEEecC--CCceEeccccCcee
Q 044581 84 WLRSHIRVRIISKELKSGRLYLKKGEVVDVVGPTMCDISMDE--SGELIQGVDQDLLE 139 (203)
Q Consensus 84 Wl~~~I~VRIidk~~~~Gk~y~kKGvV~dV~~~~~c~V~l~d--~g~~v~~V~q~~LE 139 (203)
.+.+|=+|.+. .|+|.|++++|+++++.+.+-|.-++ ++.....+.+.||.
T Consensus 3 ~v~~GrVv~~~-----~Gr~~Gk~~VIv~~iD~~~vLV~gp~~~~~~~rk~~n~khl~ 55 (96)
T 2joy_A 3 AIEVGRICVKV-----KGREAGSKCVIVDIIDDNFVLVTGPKDITGVKRRRVNILHLE 55 (96)
T ss_dssp SSSTTEEEECS-----SSSTTCCEEEEEEECSSSCEEEECCTTTTCCCCEEESCSSCE
T ss_pred ccccCEEEEEe-----ecCCCCCEEEEEEEeCCCEEEEECCcccCCcCCEEEchHHEE
Confidence 46678777665 68999999999999987776665443 22223345555554
No 28
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.43 E-value=2 Score=30.43 Aligned_cols=43 Identities=7% Similarity=0.144 Sum_probs=34.5
Q ss_pred CCceecceEEEEEecCCCeEEEEecCCCceEeccccCceeeecCCCC
Q 044581 100 SGRLYLKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLETALPRRG 146 (203)
Q Consensus 100 ~Gk~y~kKGvV~dV~~~~~c~V~l~d~g~~v~~V~q~~LETVIPk~g 146 (203)
||.|| .|.|.+|.+.++|+|.+.+- ..+.|+.++|-++.|...
T Consensus 22 Dg~~Y--~A~I~~v~~~~~~~V~f~Dy--n~e~v~~~~lrplp~~~k 64 (74)
T 2equ_A 22 DCRYY--PAKIEAINKEGTFTVQFYDG--VIRCLKRMHIKAMPEDAK 64 (74)
T ss_dssp SSSEE--EEEEEEESTTSSEEEEETTS--CEEEECGGGEECCCGGGT
T ss_pred CCCEE--EEEEEEECCCCEEEEEEecC--CeEEecHHHCeeCChhHh
Confidence 78888 58999998768999999865 456799999988876543
No 29
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=81.36 E-value=3.7 Score=31.96 Aligned_cols=90 Identities=18% Similarity=0.224 Sum_probs=58.0
Q ss_pred CCCceecceEEEEEecCCCeEEEEecCCCceEeccccCc------eeeecCCCCCcEEEEe--ccccCcEEEEEEeeCCC
Q 044581 99 KSGRLYLKKGEVVDVVGPTMCDISMDESGELIQGVDQDL------LETALPRRGGPVLVLY--GRHKGVYGNLVDRDLDR 170 (203)
Q Consensus 99 ~~Gk~y~kKGvV~dV~~~~~c~V~l~d~g~~v~~V~q~~------LETVIPk~g~~V~VV~--G~~rG~~G~Li~iD~~k 170 (203)
.+|.||. |.|+++.....|.|.++|+. ...++..+. +.-=.|..|..|.|.. |..- -|+.++.....
T Consensus 18 ~ngryy~--~~V~~~~~~~~y~V~F~DgS-~s~dl~PedIvs~dc~~~GpP~~G~~V~V~W~DG~~y--~a~f~g~~~~~ 92 (123)
T 2xdp_A 18 RNTRYYS--CRVMAVTSQTFYEVMFDDGS-FSRDTFPEDIVSRDCLKLGPPAEGEVVQVKWPDGKLY--GAKYFGSNIAH 92 (123)
T ss_dssp CCCCCCC--CEEEEEEEEEEEEEEETTSC-EEEEECGGGBCSSCHHHHCCCCTTCEEEEECTTSCEE--EEEEEEEEEEE
T ss_pred CCCcEEe--EEEEEEeeEEEEEEEcCCCC-ccCCCCHhHcccccccccCCCCCCCEEEEEcCCCCEE--eEEEeeeeeEE
Confidence 4788874 67888877778888888543 333343333 3335788899999986 6532 25666654331
Q ss_pred ceEEEEECCCCcEEEeeccchhccc
Q 044581 171 ETGVVRDADTHELVNVKLEQIAEYI 195 (203)
Q Consensus 171 ~~a~V~L~~~~~i~~l~~ddvck~~ 195 (203)
.-.|.++ |+..+.+.=++|+-.-
T Consensus 93 -~YtV~Fe-Dgs~~~~kR~~iyt~~ 115 (123)
T 2xdp_A 93 -MYQVEFE-DGSQIAMKREDIYTLD 115 (123)
T ss_dssp -EEEEECT-TSCEEEEEGGGCCCSS
T ss_pred -EEEEEEC-CCCeEEecHHHccccc
Confidence 3346665 4678888888887653
No 30
>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_D 3u5g_E
Probab=81.24 E-value=3.6 Score=35.80 Aligned_cols=40 Identities=20% Similarity=0.295 Sum_probs=30.5
Q ss_pred eEeccccCceeeecC-CCCCcEEEEeccccCcEEEEEEeeC
Q 044581 129 LIQGVDQDLLETALP-RRGGPVLVLYGRHKGVYGNLVDRDL 168 (203)
Q Consensus 129 ~v~~V~q~~LETVIP-k~g~~V~VV~G~~rG~~G~Li~iD~ 168 (203)
++.+++...+--.+| ..|.-+||..|.|.|.+|++.++..
T Consensus 160 v~idl~~~kI~d~ikfe~Gnl~mvtgG~n~GriG~I~~ie~ 200 (261)
T 3u5c_E 160 VKIDLASGKITDFIKFDAGKLVYVTGGRNLGRIGTIVHKER 200 (261)
T ss_dssp EEECSSSSCEEEEECCCSSCCEEECSSTTTTCBCCCCEEEC
T ss_pred EEEECCCCceeeEEEccCCCEEEEEcCCcceEEEEEEEEEE
Confidence 344555555555566 4578899999999999999999875
No 31
>3izc_N 60S ribosomal protein RPL14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_N 3o58_N 3o5h_N 3u5e_M 3u5i_M 4b6a_M
Probab=80.47 E-value=2.5 Score=33.58 Aligned_cols=53 Identities=15% Similarity=0.094 Sum_probs=35.2
Q ss_pred CcccCceEEEEeecccCCCceecceEEEEEecCCCeEEEEecCCCceEeccccCceee
Q 044581 83 PWLRSHIRVRIISKELKSGRLYLKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLET 140 (203)
Q Consensus 83 ~Wl~~~I~VRIidk~~~~Gk~y~kKGvV~dV~~~~~c~V~l~d~g~~v~~V~q~~LET 140 (203)
..+.+|=+|.+. .|+|.|++++|++++|.+.+-|.-+.+|-.-..++..||++
T Consensus 13 rfve~GrVV~i~-----~Gr~aGk~avIV~iiD~~rVLVDGp~~gV~R~~~n~khL~l 65 (138)
T 3izc_N 13 RLVEVGRVVLIK-----KGQSAGKLAAIVEIIDQKKVLIDGPKAGVPRQAINLGQVVL 65 (138)
T ss_dssp CCSSTTEEEECC-----SCSSSCCEEEEEEECSSSEEEEECSSSSCCCEEEECSSSEE
T ss_pred hhcccCeEEEEe-----eCCCCCCEEEEEEEecCCEEEEEcCCCCcccceechhHeEE
Confidence 356778777665 69999999999999998887774343221112344455543
No 32
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=80.37 E-value=4.4 Score=34.92 Aligned_cols=49 Identities=20% Similarity=0.312 Sum_probs=33.8
Q ss_pred EeccccCceeeecC-CCCCcEEEEeccccCcEEEEEEeeCC----CceEEEEEC
Q 044581 130 IQGVDQDLLETALP-RRGGPVLVLYGRHKGVYGNLVDRDLD----RETGVVRDA 178 (203)
Q Consensus 130 v~~V~q~~LETVIP-k~g~~V~VV~G~~rG~~G~Li~iD~~----k~~a~V~L~ 178 (203)
+.+++...+--.+| ..|..+||..|.|.|.+|++.++..- -..+.|+-.
T Consensus 165 ~idl~~~kI~d~ikf~~G~l~mvtgG~n~GriG~I~~ie~~~gs~~~~V~v~d~ 218 (243)
T 3j20_E 165 LMKVPEREILEVLPFEKGAYVFVTQGKNVARKGRIVEIKRFPMGWPDVVTIEDE 218 (243)
T ss_dssp EEETTTTEEEEEEECCTTCEEEECSSSSTTCEEEEEECCCCCSSSCCEEEEEES
T ss_pred EEECCCCCeeeEEeccCCCEEEEECCccceEEEEEEEEEEecCCCceEEEEEcC
Confidence 33455445544555 55788999999999999999999742 235555533
No 33
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=77.37 E-value=6.3 Score=34.38 Aligned_cols=39 Identities=21% Similarity=0.325 Sum_probs=29.6
Q ss_pred EeccccCceeeecC-CCCCcEEEEeccccCcEEEEEEeeC
Q 044581 130 IQGVDQDLLETALP-RRGGPVLVLYGRHKGVYGNLVDRDL 168 (203)
Q Consensus 130 v~~V~q~~LETVIP-k~g~~V~VV~G~~rG~~G~Li~iD~ 168 (203)
+.+++...+--.+| ..|.-+||+.|.|.|.+|++.++..
T Consensus 161 ~idl~~~kI~d~ikfe~Gnl~mvtgG~n~GriG~I~~ie~ 200 (265)
T 3iz6_D 161 KIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVGVIKNREK 200 (265)
T ss_dssp EECSSSCCEEEEECCSTTCEEEECSSSSCSCEEEEEEEEC
T ss_pred EEECCCCceeeEEEccCCCEEEEEcCCcceEEEEEEEEEE
Confidence 33455445555555 4578899999999999999999975
No 34
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=76.34 E-value=6 Score=27.61 Aligned_cols=43 Identities=16% Similarity=0.217 Sum_probs=33.0
Q ss_pred CCCceecceEEEEEecCCCeEEEEecCCCceEeccccCceeeecCCC
Q 044581 99 KSGRLYLKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLETALPRR 145 (203)
Q Consensus 99 ~~Gk~y~kKGvV~dV~~~~~c~V~l~d~g~~v~~V~q~~LETVIPk~ 145 (203)
.|++|| .|.|.+|.+..+++|.+.+ |. .+.|...+|-+.....
T Consensus 18 ~D~~yY--pA~I~si~~~~~Y~V~F~d-G~-~etvk~~~ikp~~~~~ 60 (67)
T 3p8d_A 18 SDCRFY--PAKVTAVNKDGTYTVKFYD-GV-VQTVKHIHVKAFSKDQ 60 (67)
T ss_dssp TTSCEE--EEEEEEECTTSEEEEEETT-SC-EEEEEGGGEEECC---
T ss_pred CCCCEe--eEEEEEECCCCeEEEEEeC-Cc-eEEEeHHHcccCCccc
Confidence 588888 6899999988899999997 54 3478888888766543
No 35
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=75.82 E-value=26 Score=27.18 Aligned_cols=85 Identities=18% Similarity=0.131 Sum_probs=57.9
Q ss_pred CceEEEEeecccCCCceecceEEEEEecCCCeEEEEecCCCceEeccccCceeeecC-------CCCCcEEEEe-ccc-c
Q 044581 87 SHIRVRIISKELKSGRLYLKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLETALP-------RRGGPVLVLY-GRH-K 157 (203)
Q Consensus 87 ~~I~VRIidk~~~~Gk~y~kKGvV~dV~~~~~c~V~l~d~g~~v~~V~q~~LETVIP-------k~g~~V~VV~-G~~-r 157 (203)
.++.|-|... .|.||. |.|+++. ...|+|...++=+....|+-+++-++.| ..|+.|-|.. ... -
T Consensus 4 ~~~~VEV~~~---~G~~y~--a~V~~v~-~d~~~V~f~n~w~~~~~vp~~~vRlpP~~~~~~~f~~gd~VEV~~~~~d~e 77 (128)
T 3h8z_A 4 QGLPVEVRGS---NGAFYK--GFVKDVH-EDSVTIFFENNWQSERQIPFGDVRLPPPADYNKEITEGDEVEVYSRANEQE 77 (128)
T ss_dssp TTCEEEEECT---TSCEEE--EEEEEEC-SSEEEEEETTCTTCCEEEEGGGEECCCCC----CCCTTCEEEEEECC---C
T ss_pred cccEEEEecC---CCCEEE--EEEEEEe-CCcEEEEEccccCcceEechhhEEcCCCcccccCCCCCCEEEEEecCCCCC
Confidence 4677777763 588984 9999985 6779999975433334688888888776 4578888874 222 1
Q ss_pred ---CcEEEEEEeeCCCceEEEEECC
Q 044581 158 ---GVYGNLVDRDLDRETGVVRDAD 179 (203)
Q Consensus 158 ---G~~G~Li~iD~~k~~a~V~L~~ 179 (203)
=-.|+++.+.++ ...|....
T Consensus 78 p~gWw~a~I~~~kg~--f~~V~y~~ 100 (128)
T 3h8z_A 78 PCGWWLARVRMMKGD--FYVIEYAA 100 (128)
T ss_dssp CCEEEEEEEEEEETT--EEEEEETT
T ss_pred cCccEEEEEEEeeCC--EEEEEEcC
Confidence 236788888876 56666443
No 36
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=74.58 E-value=10 Score=25.95 Aligned_cols=48 Identities=21% Similarity=0.470 Sum_probs=32.2
Q ss_pred cccCceEEEEeecccCCCceecceEEEEEecCC-CeEEEEecCCCceEeccccCceee
Q 044581 84 WLRSHIRVRIISKELKSGRLYLKKGEVVDVVGP-TMCDISMDESGELIQGVDQDLLET 140 (203)
Q Consensus 84 Wl~~~I~VRIidk~~~~Gk~y~kKGvV~dV~~~-~~c~V~l~d~g~~v~~V~q~~LET 140 (203)
|...+..++.. ||.||. |.|+.|... .+|.|.+.|+.+.- +.-..|.|
T Consensus 5 ~~GedVLarws-----DG~fYl--GtI~~V~~~~~~clV~F~D~s~~W--~~~kdi~~ 53 (58)
T 4hcz_A 5 WEGQDVLARWT-----DGLLYL--GTIKKVDSAREVCLVQFEDDSQFL--VLWKDISP 53 (58)
T ss_dssp CTTCEEEEECT-----TSCEEE--EEEEEEETTTTEEEEEETTSCEEE--EEGGGEEE
T ss_pred ccCCEEEEEec-----CCCEEe--EEEEEEecCCCEEEEEEcCCCeEE--EEhHHccc
Confidence 44555555544 899995 889999764 49999998765433 44445543
No 37
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=73.67 E-value=7.1 Score=28.57 Aligned_cols=43 Identities=16% Similarity=0.217 Sum_probs=33.4
Q ss_pred CCCceecceEEEEEecCCCeEEEEecCCCceEeccccCceeeecCCC
Q 044581 99 KSGRLYLKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLETALPRR 145 (203)
Q Consensus 99 ~~Gk~y~kKGvV~dV~~~~~c~V~l~d~g~~v~~V~q~~LETVIPk~ 145 (203)
.|++|| .|.|.+|.+..+++|.+.+ |. .+.+...+|-++....
T Consensus 33 ~D~~yY--PAkI~sV~~~~~YtV~F~D-G~-~etvk~~~IKp~~~~~ 75 (85)
T 3qii_A 33 SDCRFY--PAKVTAVNKDGTYTVKFYD-GV-VQTVKHIHVKAFSKDQ 75 (85)
T ss_dssp TTSCEE--EEEEEEECTTSEEEEEETT-SC-EEEEEGGGEEECC---
T ss_pred CCCCEe--eEEEEEECCCCeEEEEEeC-CC-eEEecHHHcccCChhh
Confidence 588998 6899999988899999987 54 4478999988876544
No 38
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=73.37 E-value=14 Score=25.93 Aligned_cols=60 Identities=23% Similarity=0.257 Sum_probs=39.3
Q ss_pred ceeeecC-------CCCCcEEEEec-cccCcEEEEEEeeCCCceEEEEECCCCcEEEeeccchhcccC
Q 044581 137 LLETALP-------RRGGPVLVLYG-RHKGVYGNLVDRDLDRETGVVRDADTHELVNVKLEQIAEYIG 196 (203)
Q Consensus 137 ~LETVIP-------k~g~~V~VV~G-~~rG~~G~Li~iD~~k~~a~V~L~~~~~i~~l~~ddvck~~g 196 (203)
-||++.| +.|+.++.... .-.=..|++++++.+...+.|...+=+..-.+++++|..+..
T Consensus 5 ~l~~~~~~e~~~~~kvGd~C~A~ys~Dg~wYRA~I~~i~~~~~~~~V~fvDYGN~e~V~~~~Lr~l~~ 72 (77)
T 3pnw_C 5 ILESSIPMEYAKMWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPIQT 72 (77)
T ss_dssp ------CHHHHTTCCTTCEEEEEETTTTEEEEEEEEEECTTSSEEEEEETTTCCEEEEEGGGEECC--
T ss_pred ccccccchhhcCCCCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEeHHHeEECCh
Confidence 4555554 56888888763 334466899999877668888887656677899999887654
No 39
>3iz5_N 60S ribosomal protein L14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_N
Probab=70.11 E-value=8.8 Score=30.22 Aligned_cols=34 Identities=18% Similarity=0.153 Sum_probs=27.6
Q ss_pred cccCceEEEEeecccCCCceecceEEEEEecCCCeEEEE
Q 044581 84 WLRSHIRVRIISKELKSGRLYLKKGEVVDVVGPTMCDIS 122 (203)
Q Consensus 84 Wl~~~I~VRIidk~~~~Gk~y~kKGvV~dV~~~~~c~V~ 122 (203)
.+.+|=+|.|. .|+|.|++++|++++|.+.|-|.
T Consensus 6 fvevGRVV~i~-----~Gr~aGk~avIV~iiD~~rvLVd 39 (134)
T 3iz5_N 6 FVEIGRVALVN-----YGKDYGRLVVIVDVVDQNRALVD 39 (134)
T ss_dssp SCCSSEEEECS-----CCSSSCCEEEEEEECSSSEEEEE
T ss_pred ccccCeEEEEe-----eCCCCCCEEEEEEEcCCCeEEEe
Confidence 46677777665 69999999999999998877663
No 40
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=69.93 E-value=8 Score=29.82 Aligned_cols=48 Identities=13% Similarity=0.297 Sum_probs=36.3
Q ss_pred cCceEEEEeecccCCCceecceEEEEEecC-CCeEEEEecCC---CceEeccccCce
Q 044581 86 RSHIRVRIISKELKSGRLYLKKGEVVDVVG-PTMCDISMDES---GELIQGVDQDLL 138 (203)
Q Consensus 86 ~~~I~VRIidk~~~~Gk~y~kKGvV~dV~~-~~~c~V~l~d~---g~~v~~V~q~~L 138 (203)
.++=.|.|+ .|+|.|+.|.+.++.. .+.+.|++.++ +..+..++-++|
T Consensus 72 ~~g~~V~Iv-----~G~~rG~~g~L~~id~~~~~~~V~l~~~~~~~~~v~~l~~ddi 123 (127)
T 2ckk_A 72 APGKRILVL-----NGGYRGNEGTLESINEKTFSATIVIETGPLKGRRVEGIQYEDI 123 (127)
T ss_dssp CTTCEEEEC-----SSTTTTCEEEEEEEEGGGTEEEEEECSSTTTTCEEEEEEGGGE
T ss_pred CCCCEEEEE-----ecccCCcEEEEEEEeCCCcEEEEEEccCCCCCCEEEeeCHHHh
Confidence 356689998 7999999999999964 57999999863 545544665554
No 41
>4a18_F RPL14; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_F 4a1b_F 4a1d_F 4adx_7
Probab=69.10 E-value=12 Score=29.19 Aligned_cols=50 Identities=14% Similarity=0.030 Sum_probs=34.2
Q ss_pred cccCceEEEEeecccCCCceecceEEEEEecCCCeEEEEecCCCceEeccccCceee
Q 044581 84 WLRSHIRVRIISKELKSGRLYLKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLET 140 (203)
Q Consensus 84 Wl~~~I~VRIidk~~~~Gk~y~kKGvV~dV~~~~~c~V~l~d~g~~v~~V~q~~LET 140 (203)
.+.+|=+|-|. .|.|.|++++|++|+|.+.|-|.-++ -.-+.++-.||++
T Consensus 6 fvevGRVv~i~-----~G~~aGklavIVdIID~nrvLVdGp~--V~Rq~~n~k~l~L 55 (126)
T 4a18_F 6 FVQVGRVVYIN-----YGADKGKLAVIVNIINQNRILIDGEH--IVRQVIPIRRVHL 55 (126)
T ss_dssp EEETTEEEEEC-----SSTTTTEEEEEEEEETTTEEEEEETT--EEEEEEEGGGEEE
T ss_pred ceecceEEEEc-----cCCccCCEEEEEEEecCCeEEEeCCC--cccceeeccceEE
Confidence 45666666664 68999999999999998888775543 1122355555554
No 42
>1qp2_A Protein (PSAE protein); mainly beta, roll, pleckstrin topology, SH3-like, electron T; NMR {Nostoc SP} SCOP: b.34.4.2 PDB: 1qp3_A
Probab=68.58 E-value=18 Score=25.62 Aligned_cols=59 Identities=19% Similarity=0.228 Sum_probs=42.4
Q ss_pred ccCceEEEEeecccCCCceecceEEEEEecCC---CeEEEEecC---CCceEeccccCceeeecCCCC
Q 044581 85 LRSHIRVRIISKELKSGRLYLKKGEVVDVVGP---TMCDISMDE---SGELIQGVDQDLLETALPRRG 146 (203)
Q Consensus 85 l~~~I~VRIidk~~~~Gk~y~kKGvV~dV~~~---~~c~V~l~d---~g~~v~~V~q~~LETVIPk~g 146 (203)
+.+|-.|||..+. .=+|+..|.|..|... |-+.|.++. +|-..-+...+.||-|-|..+
T Consensus 2 i~rGs~VrIlr~e---Sywy~~vG~V~~Vd~~~~~ypV~VrFekvNy~g~~TnnFal~ELe~v~~~~~ 66 (70)
T 1qp2_A 2 VQRGSKVRILRPE---SYWFQDVGTVASVDQSGIKYPVIVRFEKVNYSGINTNNFAEDELVEVEAPKA 66 (70)
T ss_dssp CCTTCEEEECCTT---STTTTCEEEEEEECCSSCSCSEEEECSSCCSSCCSEEEECGGGEEECCCCCS
T ss_pred cCCCCEEEEcCcc---ceeecceeEEEEEeCCCcEeeEEEEecccccccccccccChhHeeEeccCcc
Confidence 4578899999763 4689999999999763 458888874 232233477888998885444
No 43
>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=68.58 E-value=8.2 Score=27.80 Aligned_cols=35 Identities=20% Similarity=0.189 Sum_probs=26.4
Q ss_pred ccCceEEEEeecccCCCceecceEEEEEecCCCeEEEEec
Q 044581 85 LRSHIRVRIISKELKSGRLYLKKGEVVDVVGPTMCDISMD 124 (203)
Q Consensus 85 l~~~I~VRIidk~~~~Gk~y~kKGvV~dV~~~~~c~V~l~ 124 (203)
+.+|=+|.+. .|+|.|++++|+++.+.+.+-|.-+
T Consensus 4 ~~~Grvv~~~-----~Gr~~Gk~~vIv~iiD~~~vlV~g~ 38 (83)
T 3j21_5 4 IDVGRIAVVI-----AGRRAGQKVVVVDIIDKNFVLVTGA 38 (83)
T ss_dssp CCTTEEEECS-----SSSSSCCCEEEEEECSSSCEEEECC
T ss_pred cccCEEEEEe-----ecCCCCCEEEEEEEcCCCEEEEECC
Confidence 4567677654 6899999999999988776655543
No 44
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=68.10 E-value=24 Score=23.54 Aligned_cols=54 Identities=9% Similarity=0.039 Sum_probs=41.2
Q ss_pred ecCCCCCcEEEEe-ccccCcEEEEEEeeCCCceEEEEECCCCcEEEeeccchhcc
Q 044581 141 ALPRRGGPVLVLY-GRHKGVYGNLVDRDLDRETGVVRDADTHELVNVKLEQIAEY 194 (203)
Q Consensus 141 VIPk~g~~V~VV~-G~~rG~~G~Li~iD~~k~~a~V~L~~~~~i~~l~~ddvck~ 194 (203)
..|+.|+.++... ..-.=..|++.+++.+...+.|...+=+..-.+++.+|..+
T Consensus 7 ~~~~vGd~c~A~~s~Dg~wYrA~I~~v~~~~~~~~V~fvdYGn~e~V~~~~Lrpl 61 (64)
T 4a4f_A 7 HSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNLKPV 61 (64)
T ss_dssp SCCCTTCEEEEECTTTSSEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGGEECC
T ss_pred CCCCCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEecCCEEEEeHHHcEeC
Confidence 4588899999886 33345678999999876788998876566777888888654
No 45
>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1
Probab=67.37 E-value=48 Score=26.74 Aligned_cols=92 Identities=15% Similarity=0.040 Sum_probs=56.8
Q ss_pred CCceecceEEEEEecCCCeEEEEecCCCceEeccccCceeeecCCC-CCcEEEEeccccCcEEEEEEeeCCC--ceEEEE
Q 044581 100 SGRLYLKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLETALPRR-GGPVLVLYGRHKGVYGNLVDRDLDR--ETGVVR 176 (203)
Q Consensus 100 ~Gk~y~kKGvV~dV~~~~~c~V~l~d~g~~v~~V~q~~LETVIPk~-g~~V~VV~G~~rG~~G~Li~iD~~k--~~a~V~ 176 (203)
+.+||- .|.|..+..++.|.|.++|+-... +.+.++=.+.|-. +..|.-+.+..-...|.+...+.+. ..-.|+
T Consensus 21 d~~yyY-pG~V~~~~~~~~Y~V~FdDG~~k~--v~~~divv~~~LP~~~~V~A~~~ddy~s~giI~~h~~~~~e~~Y~Ve 97 (156)
T 1ssf_A 21 SNGYFY-SGKITRDVGAGKYKLLFDDGYECD--VLGKDILLCDPIPLDTEVTALSEDEYFSAGVVKGHRKESGELYYSIE 97 (156)
T ss_dssp CSSEEE-EEEEEECCTTTEEEEECTTSCEEE--EETTTEEEECCSCSSEEEEESSCTTTCEEEEEEEEEEETTEEEEEEE
T ss_pred CCCccc-ccEEEEeccCCEEEEEEcCCCeeE--eeccceEEEeccCCCcEEEEccCCccccccEEEeecCCCCcEEEEEE
Confidence 334442 689999998999999998765433 6655555333332 4678878777778888888654432 223455
Q ss_pred ECCCCcEE-------EeeccchhcccC
Q 044581 177 DADTHELV-------NVKLEQIAEYIG 196 (203)
Q Consensus 177 L~~~~~i~-------~l~~ddvck~~g 196 (203)
. +++.+ +|+.++..-+..
T Consensus 98 ~--~G~t~~~~~~dI~LS~eQa~~l~~ 122 (156)
T 1ssf_A 98 K--EGQRKWYKRMAVILSLEQGNRLRE 122 (156)
T ss_dssp E--TTEEEEECGGGEEEEHHHHHTTTT
T ss_pred e--CCcEEEEEeeeEEECHHHHHHHHH
Confidence 4 34443 466666555543
No 46
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=65.63 E-value=13 Score=24.46 Aligned_cols=41 Identities=12% Similarity=0.203 Sum_probs=31.6
Q ss_pred CCceecceEEEEEecC-CCeEEEEecCCCceEeccccCceeeecC
Q 044581 100 SGRLYLKKGEVVDVVG-PTMCDISMDESGELIQGVDQDLLETALP 143 (203)
Q Consensus 100 ~Gk~y~kKGvV~dV~~-~~~c~V~l~d~g~~v~~V~q~~LETVIP 143 (203)
||.+| .++|.++.. ..+|.|...+=|.. +.|+.+.|-+..|
T Consensus 17 Dg~wY--rA~I~~i~~~~~~~~V~f~DYGn~-e~v~~~~Lr~~~~ 58 (59)
T 1mhn_A 17 DGCIY--PATIASIDFKRETCVVVYTGYGNR-EEQNLSDLLSPIC 58 (59)
T ss_dssp TSCEE--EEEEEEEETTTTEEEEEETTTTEE-EEEEGGGCBCTTC
T ss_pred CCCEE--EEEEEEEcCCCCEEEEEEEcCCCE-EEEcHHHeeCCCC
Confidence 78887 578999975 58999999886754 4788888877544
No 47
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=65.35 E-value=9.7 Score=26.91 Aligned_cols=40 Identities=25% Similarity=0.438 Sum_probs=30.4
Q ss_pred CCCcccCceEEEEeecccCCCceecceEEEEEecCCCeEEEEecCCCc
Q 044581 81 NVPWLRSHIRVRIISKELKSGRLYLKKGEVVDVVGPTMCDISMDESGE 128 (203)
Q Consensus 81 ~~~Wl~~~I~VRIidk~~~~Gk~y~kKGvV~dV~~~~~c~V~l~d~g~ 128 (203)
...|+..+..+|.. ||.||. |.|++.. ..+|-|.+.|+.+
T Consensus 14 ~~~~~geDVL~rw~-----DG~fYL--GtIVd~~-~~~ClV~FeD~S~ 53 (69)
T 2xk0_A 14 VTYALQEDVFIKCN-----DGRFYL--GTIIDQT-SDQYLIRFDDQSE 53 (69)
T ss_dssp CCCCTTCEEEEECT-----TSCEEE--EEEEEEC-SSCEEEEETTCCE
T ss_pred cccccCCeEEEEec-----CCCEEE--EEEEecC-CceEEEEecCCcc
Confidence 45688888888754 899996 7777754 7899999987654
No 48
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=64.26 E-value=22 Score=23.03 Aligned_cols=51 Identities=18% Similarity=0.190 Sum_probs=35.3
Q ss_pred ccCceEEEEeecccCCCceecceEEEEEecCC-CeEEEEecCCCc-eEeccccCceee
Q 044581 85 LRSHIRVRIISKELKSGRLYLKKGEVVDVVGP-TMCDISMDESGE-LIQGVDQDLLET 140 (203)
Q Consensus 85 l~~~I~VRIidk~~~~Gk~y~kKGvV~dV~~~-~~c~V~l~d~g~-~v~~V~q~~LET 140 (203)
+.+|=.|+|+ +|.|.+..|.|..+... ..+.|.+.--|+ +-..++.++||.
T Consensus 5 ~~~Gd~V~V~-----~Gpf~g~~g~v~~v~~~k~~v~V~v~~~Gr~t~v~l~~~~vek 57 (58)
T 1nz9_A 5 FREGDQVRVV-----SGPFADFTGTVTEINPERGKVKVMVTIFGRETPVELDFSQVVK 57 (58)
T ss_dssp CCTTCEEEEC-----SGGGTTCEEEEEEEETTTTEEEEEEESSSSEEEEEECGGGEEE
T ss_pred cCCCCEEEEe-----ecCCCCcEEEEEEEcCCCCEEEEEEEeCCCEEEEEECHHHEEE
Confidence 4567789999 68888999999999654 567666543333 222577666664
No 49
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=63.97 E-value=30 Score=24.93 Aligned_cols=57 Identities=16% Similarity=0.081 Sum_probs=42.5
Q ss_pred cCCCCCcEEEEec-cccCcEEEEEEeeCCCceEEEEECCCCcEEEeeccchhcccCCC
Q 044581 142 LPRRGGPVLVLYG-RHKGVYGNLVDRDLDRETGVVRDADTHELVNVKLEQIAEYIGDP 198 (203)
Q Consensus 142 IPk~g~~V~VV~G-~~rG~~G~Li~iD~~k~~a~V~L~~~~~i~~l~~ddvck~~g~~ 198 (203)
.|+.|+.++...- .-.=..|++.+++.....+.|.+.+=+..-.+++.+|.-+...+
T Consensus 10 ~~kvGd~C~A~ys~Dg~wYrA~I~~i~~~~~~~~V~fiDYGN~E~V~~~~Lrp~~~~~ 67 (88)
T 1g5v_A 10 QWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPICEV 67 (88)
T ss_dssp CCCSSCEEEEECTTTCCEEEEEEEEEETTTTEEEEEETTTCCEEEEEGGGCBCCC---
T ss_pred CCCCCCEEEEEECCCCCEEEEEEEEecCCCCEEEEEEecCCCEEEEcHHHcccCChhh
Confidence 5888999999863 34557789999998656888988765667789999988765443
No 50
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=63.78 E-value=32 Score=23.46 Aligned_cols=50 Identities=22% Similarity=0.181 Sum_probs=37.9
Q ss_pred CCCcEEEEeccccCcEEEEEEeeCCCceEEEEECCCCcEEEeeccchhccc
Q 044581 145 RGGPVLVLYGRHKGVYGNLVDRDLDRETGVVRDADTHELVNVKLEQIAEYI 195 (203)
Q Consensus 145 ~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~L~~~~~i~~l~~ddvck~~ 195 (203)
.|..|++-.-.-+=..|++++++..+.+..|++.+ +...-+.+.+|.+.+
T Consensus 6 ~GedVLarwsDG~fYlGtI~~V~~~~~~clV~F~D-~s~~W~~~kdi~~~~ 55 (58)
T 4hcz_A 6 EGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFED-DSQFLVLWKDISPAA 55 (58)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEETTTTEEEEEETT-SCEEEEEGGGEEECS
T ss_pred cCCEEEEEecCCCEEeEEEEEEecCCCEEEEEEcC-CCeEEEEhHHccccc
Confidence 35677776555566889999999999999999874 555667888876654
No 51
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=60.57 E-value=18 Score=27.31 Aligned_cols=66 Identities=15% Similarity=0.180 Sum_probs=46.0
Q ss_pred CCceecceEEEEEecCCCeEEEEecCCCceEeccccCceeeecCCCCCcEEEEeccccCcEEEEEEeeC
Q 044581 100 SGRLYLKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLETALPRRGGPVLVLYGRHKGVYGNLVDRDL 168 (203)
Q Consensus 100 ~Gk~y~kKGvV~dV~~~~~c~V~l~d~g~~v~~V~q~~LETVIPk~g~~V~VV~G~~rG~~G~Li~iD~ 168 (203)
.++. .|.|+..++++.+.|.+.+....+-.++-.+--.+-|..|+.|.|-.-.|-...|.++.+-.
T Consensus 31 ~~e~---~G~Vi~~lgn~~y~V~~~dG~~~l~~i~GK~Rk~I~i~~GD~V~ve~~~~~~~kG~I~~~~~ 96 (117)
T 2oqk_A 31 EGQE---YGQVQRMLGNGRLDAYCFDGQKRLCHIRGKMRKKVWVNPGDIVLVSLRDFQDSKGDIILKYT 96 (117)
T ss_dssp TTEE---EEEEEEEEETTEEEEEETTSCEEEEECCHHHHHHSCCCTTCEEEEEECTTCTTEEEEEEECC
T ss_pred CCEE---EEEEEEEcCCCEEEEEeCCCCEEEEEEcCceecCCcCCCCCEEEEEEEcCCCCeEEEEEEec
Confidence 4555 47888888778888888764444445666555577788999999876555555677776654
No 52
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=59.43 E-value=41 Score=23.30 Aligned_cols=56 Identities=20% Similarity=0.140 Sum_probs=42.1
Q ss_pred cCCCCCcEEEEec-cccCcEEEEEEeeCCCceEEEEECCCCcEEEeeccchhcccCC
Q 044581 142 LPRRGGPVLVLYG-RHKGVYGNLVDRDLDRETGVVRDADTHELVNVKLEQIAEYIGD 197 (203)
Q Consensus 142 IPk~g~~V~VV~G-~~rG~~G~Li~iD~~k~~a~V~L~~~~~i~~l~~ddvck~~g~ 197 (203)
.|+.|+.++...- .-.=..|++++++.+...+.|.+.+=+..-.+++++|..+..+
T Consensus 9 ~~~~G~~c~A~~s~Dg~wYRA~I~~i~~~~~~~~V~fiDYGN~e~V~~~~Lr~l~~~ 65 (78)
T 2d9t_A 9 VWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLSNIKPVQTE 65 (78)
T ss_dssp CCCTTCEEEEECTTTCCEEEEEEEEECSSSSEEEEEETTTTEEEEEEGGGEEECCCC
T ss_pred CCCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEcHHHeEeCCHH
Confidence 5888888888752 2344678888998755688899876577778999999887543
No 53
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=59.19 E-value=24 Score=27.08 Aligned_cols=53 Identities=15% Similarity=0.113 Sum_probs=41.6
Q ss_pred cccCceEEEEeecccCCCceecceEEEEEecC-CCeEEEEecCCCc--eEeccccCceeeec
Q 044581 84 WLRSHIRVRIISKELKSGRLYLKKGEVVDVVG-PTMCDISMDESGE--LIQGVDQDLLETAL 142 (203)
Q Consensus 84 Wl~~~I~VRIidk~~~~Gk~y~kKGvV~dV~~-~~~c~V~l~d~g~--~v~~V~q~~LETVI 142 (203)
=+.+|=.|+|+ +|.|.+..|.|..+.. ...+.|.+..-|+ .+ .++.+++|.+-
T Consensus 91 ~~~~Gd~VrI~-----~Gpf~g~~g~V~~vd~~k~~v~V~v~~~gr~tpv-el~~~~v~~i~ 146 (152)
T 3p8b_B 91 GLEPGDLVEVI-----AGPFKGQKAKVVKIDESKDEVVVQFIDAIVPIPV-TIKGDYVRLIS 146 (152)
T ss_dssp TCCTTCEEEEC-----SSTTTTCEEEEEEEETTTTEEEEEESSCSSCCEE-EEEGGGEEEEE
T ss_pred cCCCCCEEEEe-----eecCCCCEEEEEEEeCCCCEEEEEEEecceeEEE-EECHHHEEEec
Confidence 46778899999 6888999999999975 4677888876554 45 68888888763
No 54
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=58.94 E-value=24 Score=24.54 Aligned_cols=42 Identities=12% Similarity=0.196 Sum_probs=33.5
Q ss_pred CCceecceEEEEEecC-CCeEEEEecCCCceEeccccCceeeecCC
Q 044581 100 SGRLYLKKGEVVDVVG-PTMCDISMDESGELIQGVDQDLLETALPR 144 (203)
Q Consensus 100 ~Gk~y~kKGvV~dV~~-~~~c~V~l~d~g~~v~~V~q~~LETVIPk 144 (203)
||.+| .++|.++.. ..+|.|.+.|=|..- .|+.++|-++.|.
T Consensus 23 Dg~wY--RA~I~~i~~~~~~~~V~fiDYGN~e-~V~~~~Lr~l~~~ 65 (78)
T 2d9t_A 23 DNKFY--RAEVEALHSSGMTAVVKFTDYGNYE-EVLLSNIKPVQTE 65 (78)
T ss_dssp TCCEE--EEEEEEECSSSSEEEEEETTTTEEE-EEEGGGEEECCCC
T ss_pred CCCEE--EEEEEEEeCCCCEEEEEEEcCCCeE-EEcHHHeEeCCHH
Confidence 78887 578999875 478999999877644 7899999888765
No 55
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.27 E-value=18 Score=24.01 Aligned_cols=48 Identities=17% Similarity=0.275 Sum_probs=34.9
Q ss_pred ccCceEEEEeecccCCCceecceEEEEEecCCCeEEEEec--CCCceEeccccCcee
Q 044581 85 LRSHIRVRIISKELKSGRLYLKKGEVVDVVGPTMCDISMD--ESGELIQGVDQDLLE 139 (203)
Q Consensus 85 l~~~I~VRIidk~~~~Gk~y~kKGvV~dV~~~~~c~V~l~--d~g~~v~~V~q~~LE 139 (203)
+.+|=.|+|+ +|.|-+-.|+|..|.. ..+.|.+. .-...+ .++.++|+
T Consensus 8 f~~GD~V~V~-----~Gpf~g~~G~V~evd~-e~v~V~v~~fg~~tpv-el~~~qv~ 57 (59)
T 2e6z_A 8 FQPGDNVEVC-----EGELINLQGKILSVDG-NKITIMPKHEDLKDML-EFPAQELR 57 (59)
T ss_dssp CCTTSEEEEC-----SSTTTTCEEEECCCBT-TEEEEEECCSSCCSCE-EEETTTEE
T ss_pred CCCCCEEEEe-----ecCCCCCEEEEEEEeC-CEEEEEEEecCCCceE-EEcHHHEE
Confidence 4678899999 6888899999999975 47777764 222345 56666665
No 56
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=55.73 E-value=16 Score=26.33 Aligned_cols=42 Identities=21% Similarity=0.499 Sum_probs=30.7
Q ss_pred CCCcccCceEEEEeecccCCCceecceEEEEEecC-CCeEEEEecCCCce
Q 044581 81 NVPWLRSHIRVRIISKELKSGRLYLKKGEVVDVVG-PTMCDISMDESGEL 129 (203)
Q Consensus 81 ~~~Wl~~~I~VRIidk~~~~Gk~y~kKGvV~dV~~-~~~c~V~l~d~g~~ 129 (203)
...|+..+..++- .||.||. |.|+.|.. ...|-|.+.|+.+.
T Consensus 25 ~~f~eGeDVLarw-----sDGlfYL--GTI~kV~~~~e~ClV~F~D~S~~ 67 (79)
T 2m0o_A 25 PRLWEGQDVLARW-----TDGLLYL--GTIKKVDSAREVCLVQFEDDSQF 67 (79)
T ss_dssp CCCCTTCEEEBCC-----TTSCCCE--EEEEEEETTTTEEEEEETTSCEE
T ss_pred ceeccCCEEEEEe-----cCCCEEe--EEEEEeccCCCEEEEEEcCCCeE
Confidence 3567777766643 3899995 88898865 67899999876543
No 57
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=55.51 E-value=19 Score=25.12 Aligned_cols=28 Identities=21% Similarity=0.424 Sum_probs=22.9
Q ss_pred CCCceecceEEEEEecC-CCeEEEEecCCCc
Q 044581 99 KSGRLYLKKGEVVDVVG-PTMCDISMDESGE 128 (203)
Q Consensus 99 ~~Gk~y~kKGvV~dV~~-~~~c~V~l~d~g~ 128 (203)
.||.|| -|.|..|.. .++|.|++.|+-+
T Consensus 25 tDGl~Y--~gtI~~V~~~~gtC~V~F~D~s~ 53 (66)
T 2eqj_A 25 SDGLFY--LGTIKKINILKQSCFIIFEDSSK 53 (66)
T ss_dssp TTSCEE--EEEEEEEETTTTEEEEEETTTEE
T ss_pred ccCcEE--EeEEEEEccCCcEEEEEEccCCE
Confidence 489999 489999987 5899999987543
No 58
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=54.62 E-value=21 Score=25.75 Aligned_cols=56 Identities=13% Similarity=0.191 Sum_probs=37.9
Q ss_pred CcccCceEEEEeecccCCCceecceEEEEEecC-CCeEEEEecCCCceEeccccCceeeecCC
Q 044581 83 PWLRSHIRVRIISKELKSGRLYLKKGEVVDVVG-PTMCDISMDESGELIQGVDQDLLETALPR 144 (203)
Q Consensus 83 ~Wl~~~I~VRIidk~~~~Gk~y~kKGvV~dV~~-~~~c~V~l~d~g~~v~~V~q~~LETVIPk 144 (203)
.| .+|-.+--. ...||.|| .++|.++.. .+.|.|.+.+=|..- .|+.+.|-++.|.
T Consensus 10 ~~-kvGd~C~A~--ys~Dg~wY--rA~I~~i~~~~~~~~V~fiDYGN~E-~V~~~~Lrp~~~~ 66 (88)
T 1g5v_A 10 QW-KVGDKCSAI--WSEDGCIY--PATIASIDFKRETCVVVYTGYGNRE-EQNLSDLLSPICE 66 (88)
T ss_dssp CC-CSSCEEEEE--CTTTCCEE--EEEEEEEETTTTEEEEEETTTCCEE-EEEGGGCBCCC--
T ss_pred CC-CCCCEEEEE--ECCCCCEE--EEEEEEecCCCCEEEEEEecCCCEE-EEcHHHcccCChh
Confidence 46 345554443 22488998 589999975 489999998866544 6888888776554
No 59
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=54.13 E-value=38 Score=23.86 Aligned_cols=51 Identities=14% Similarity=0.181 Sum_probs=35.8
Q ss_pred CCcEEEEeccccCcEEEEEEeeCCCceEEEEECCCCcEEEeeccchhcccCCCC
Q 044581 146 GGPVLVLYGRHKGVYGNLVDRDLDRETGVVRDADTHELVNVKLEQIAEYIGDPS 199 (203)
Q Consensus 146 g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~L~~~~~i~~l~~ddvck~~g~~~ 199 (203)
|..|++=.-.-+=..|++++ ..+.++.|++++ +...-+.+.+|-++.+.++
T Consensus 19 geDVL~rw~DG~fYLGtIVd--~~~~~ClV~FeD-~S~~Wv~~kdi~kl~~~~~ 69 (69)
T 2xk0_A 19 QEDVFIKCNDGRFYLGTIID--QTSDQYLIRFDD-QSEQWCEPDKLRKLGGGSS 69 (69)
T ss_dssp TCEEEEECTTSCEEEEEEEE--ECSSCEEEEETT-CCEEEECTTTEECSSCCCC
T ss_pred CCeEEEEecCCCEEEEEEEe--cCCceEEEEecC-CcceeeeHHHHHhhcCCCC
Confidence 55676554333457888854 556688999874 5567799999999887653
No 60
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=53.13 E-value=28 Score=23.14 Aligned_cols=40 Identities=15% Similarity=0.159 Sum_probs=30.4
Q ss_pred CCCceecceEEEEEecC-CCeEEEEecCCCceEeccccCceeee
Q 044581 99 KSGRLYLKKGEVVDVVG-PTMCDISMDESGELIQGVDQDLLETA 141 (203)
Q Consensus 99 ~~Gk~y~kKGvV~dV~~-~~~c~V~l~d~g~~v~~V~q~~LETV 141 (203)
.||.+|. +.|.++.+ .+.|.|...+=|..- .|+.+.|-++
T Consensus 21 ~Dg~wYr--A~I~~v~~~~~~~~V~fvdYGn~e-~V~~~~Lrpl 61 (64)
T 4a4f_A 21 EDGQCYE--AEIEEIDEENGTAAITFAGYGNAE-VTPLLNLKPV 61 (64)
T ss_dssp TTSSEEE--EEEEEEETTTTEEEEEETTTTEEE-EEEGGGEECC
T ss_pred CCCCEEE--EEEEEEcCCCCEEEEEEEecCCEE-EEeHHHcEeC
Confidence 3888884 78999986 479999998866543 6787777653
No 61
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=52.69 E-value=30 Score=27.25 Aligned_cols=88 Identities=13% Similarity=0.087 Sum_probs=54.2
Q ss_pred eEEEEEecCCCeEEEEecCCCceEec----ccc-----Ccee-eecCCCCCcEEEEec-cccCcEEEEEEeeCCCceEEE
Q 044581 107 KGEVVDVVGPTMCDISMDESGELIQG----VDQ-----DLLE-TALPRRGGPVLVLYG-RHKGVYGNLVDRDLDRETGVV 175 (203)
Q Consensus 107 KGvV~dV~~~~~c~V~l~d~g~~v~~----V~q-----~~LE-TVIPk~g~~V~VV~G-~~rG~~G~Li~iD~~k~~a~V 175 (203)
...|..|.+++..-|++.+.+..++. +.+ ..|. +..|+.|+.+....- ...=..|+++++.. ..+.|
T Consensus 6 ~V~Vt~v~~p~~f~vq~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~g~~c~a~~~~d~~wyRa~V~~v~~--~~~~V 83 (218)
T 2wac_A 6 NVIVTEITETLTFFAQSVESGSKLESLMSKLHADFQSNPPIAGSYTPKRGDLVAAQFTLDNQWYRAKVERVQG--SNATV 83 (218)
T ss_dssp EEEEEEECTTSEEEEEEGGGHHHHHHHHHHHHHHHHHSCCCTTSCCCCTTCEEEEECTTTCCEEEEEEEEEET--TEEEE
T ss_pred EEEEEEEcCCCEEEEEECCCHHHHHHHHHHHHHHHhhCCCCCCCccCCcCCEEEEEECCCCeEEEEEEEEecC--CeEEE
Confidence 56778888888777777654321211 111 1122 134777888877752 22335678888876 47888
Q ss_pred EECCCCcEEEeeccchhcccC
Q 044581 176 RDADTHELVNVKLEQIAEYIG 196 (203)
Q Consensus 176 ~L~~~~~i~~l~~ddvck~~g 196 (203)
.+.+-|....+++.+|..+..
T Consensus 84 ~~vDyG~~~~v~~~~l~~l~~ 104 (218)
T 2wac_A 84 LYIDYGNKETLPTNRLAALPP 104 (218)
T ss_dssp EETTTCCEEEEEGGGEEECCG
T ss_pred EEEecCCeEEEchHHcccCCh
Confidence 877667777788777766543
No 62
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=52.45 E-value=26 Score=24.66 Aligned_cols=57 Identities=12% Similarity=0.029 Sum_probs=39.0
Q ss_pred CCcccCceEEEEeecccCCCceecceEEEEEecCCCeEEEEecCCCceEeccccCceeeecCC
Q 044581 82 VPWLRSHIRVRIISKELKSGRLYLKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLETALPR 144 (203)
Q Consensus 82 ~~Wl~~~I~VRIidk~~~~Gk~y~kKGvV~dV~~~~~c~V~l~d~g~~v~~V~q~~LETVIPk 144 (203)
..|- +|-.+-..- ..+|.+| -|.|.++.+.+.|.|.+.|=|..- .|+.++|-+..|.
T Consensus 26 ~~~~-~G~~c~a~~--~~d~~wy--RA~I~~~~~~~~~~V~fvDyGn~e-~v~~~~lr~l~~~ 82 (94)
T 3fdr_A 26 LTVH-VGDIVAAPL--PTNGSWY--RARVLGTLENGNLDLYFVDFGDNG-DCPLKDLRALRSD 82 (94)
T ss_dssp CCCC-TTCEEEEEE--TTTTEEE--EEEEEEECTTSCEEEEETTTCCEE-EECGGGCEECCGG
T ss_pred CCCC-CCCEEEEEE--CCCCeEE--EEEEEEECCCCeEEEEEEcCCCeE-EEEHHHhhhcCHH
Confidence 3463 444443331 1367887 588999986678999999888755 6888888776553
No 63
>4a18_N RPL27, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_N 4a1b_N 4a1d_N
Probab=51.50 E-value=18 Score=28.80 Aligned_cols=29 Identities=24% Similarity=0.272 Sum_probs=23.9
Q ss_pred cccCceEEEEeecccCCCceecceEEEEEecCCC
Q 044581 84 WLRSHIRVRIISKELKSGRLYLKKGEVVDVVGPT 117 (203)
Q Consensus 84 Wl~~~I~VRIidk~~~~Gk~y~kKGvV~dV~~~~ 117 (203)
.+.||=+|-|. .|+|.|++++|+++++.+
T Consensus 4 f~kpGrVvivl-----~Gr~aGkkaVIvk~iD~g 32 (144)
T 4a18_N 4 FLKYGRVVILL-----QGRFAGKKAVIVKSSEDG 32 (144)
T ss_dssp CCCTTEEEEEC-----SSTTTTCEEEEEEEESSC
T ss_pred cccCCeEEEEe-----cCCcCCCEEEEEEecCCC
Confidence 56778777665 799999999999999873
No 64
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=49.52 E-value=62 Score=22.36 Aligned_cols=52 Identities=17% Similarity=0.120 Sum_probs=41.7
Q ss_pred CCCCcEEEEeccccCcEEEEEEeeCCCceEEEEECCCCcEEEeeccchhcccCC
Q 044581 144 RRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVRDADTHELVNVKLEQIAEYIGD 197 (203)
Q Consensus 144 k~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~L~~~~~i~~l~~ddvck~~g~ 197 (203)
+.|+.||.-.|.-+=.-|++.+++.+ ...+|++.+ +.+.++...+|-.+..+
T Consensus 8 ~vGd~vmArW~D~~yYpA~I~si~~~-~~Y~V~F~d-G~~etvk~~~ikp~~~~ 59 (67)
T 3p8d_A 8 QINEQVLACWSDCRFYPAKVTAVNKD-GTYTVKFYD-GVVQTVKHIHVKAFSKD 59 (67)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEECTT-SEEEEEETT-SCEEEEEGGGEEECC--
T ss_pred ccCCEEEEEcCCCCEeeEEEEEECCC-CeEEEEEeC-CceEEEeHHHcccCCcc
Confidence 45889999998888889999999998 468898886 77888998888776543
No 65
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=54.15 E-value=3.7 Score=29.72 Aligned_cols=38 Identities=18% Similarity=0.279 Sum_probs=29.8
Q ss_pred CCceecceEEEEEecCCCeEEEEecCCCceEeccccCceeee
Q 044581 100 SGRLYLKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLETA 141 (203)
Q Consensus 100 ~Gk~y~kKGvV~dV~~~~~c~V~l~d~g~~v~~V~q~~LETV 141 (203)
||.|| .+.|.+|.+.++|+|.+.+ |. .+.++.++|-++
T Consensus 19 Dg~wY--~A~I~~v~~~~~y~V~F~D-Gn-~E~V~~s~LrPl 56 (81)
T 2ldm_A 19 DSRFY--PAKVTAVNKDGTYTVKFYD-GV-VQTVKHIHVKAF 56 (81)
Confidence 77888 5789999776789999987 64 447888888766
No 66
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=47.63 E-value=68 Score=22.31 Aligned_cols=49 Identities=14% Similarity=0.120 Sum_probs=35.9
Q ss_pred CCCCcEEEEeccccCcEEEEEEeeCCCceEEEEECCCCcEEEeeccchhc
Q 044581 144 RRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVRDADTHELVNVKLEQIAE 193 (203)
Q Consensus 144 k~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~L~~~~~i~~l~~ddvck 193 (203)
+.|+.|+.-.-.=+-..|++.+|+..++++.|++.+ +...-+.+-||-.
T Consensus 15 ~vGddVLA~wtDGl~Y~gtI~~V~~~~gtC~V~F~D-~s~~w~~~kdi~~ 63 (66)
T 2eqj_A 15 EEGQDVLARWSDGLFYLGTIKKINILKQSCFIIFED-SSKSWVLWKDIQT 63 (66)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEEETTTTEEEEEETT-TEEEEEETTTEEC
T ss_pred cCCCEEEEEEccCcEEEeEEEEEccCCcEEEEEEcc-CCEEEEEeecccc
Confidence 457778777544456889999999998999999874 5455566666543
No 67
>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5
Probab=46.13 E-value=55 Score=22.14 Aligned_cols=57 Identities=14% Similarity=0.175 Sum_probs=33.0
Q ss_pred eEEEEEecCCCeEEEEecCCCceEeccccCcee-eecCCCCCcEEEEeccccCcEEEE
Q 044581 107 KGEVVDVVGPTMCDISMDESGELIQGVDQDLLE-TALPRRGGPVLVLYGRHKGVYGNL 163 (203)
Q Consensus 107 KGvV~dV~~~~~c~V~l~d~g~~v~~V~q~~LE-TVIPk~g~~V~VV~G~~rG~~G~L 163 (203)
.|.|...++++.+.|.+.++...+-.++-.+-- .+-|..|+.|.|-.-+|-...|.+
T Consensus 9 ~G~Vi~~lg~~~y~V~~~~g~~~~~~i~Gk~Rk~~i~i~vGD~V~ve~~~~~~~kg~I 66 (71)
T 1ah9_A 9 QGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRI 66 (71)
T ss_dssp CEEEEEECSSSEEEEEETTSCEEEEEECSSGGGTTCCCCTTCEECCEECSSCTTEEEE
T ss_pred EEEEEEEeCCcEEEEEECCCCEEEEEEcceEeccCccCCCCCEEEEEEecCCCCEEEE
Confidence 577777776677777776443333345555442 366778888877543333334443
No 68
>3gzb_A Putative snoal-like polyketide cyclase; YP_001182657.1, STRU genomics, joint center for structural genomics, JCSG; HET: MSE; 1.44A {Shewanella putrefaciens} PDB: 3lza_A*
Probab=45.15 E-value=14 Score=29.46 Aligned_cols=44 Identities=23% Similarity=0.389 Sum_probs=33.3
Q ss_pred CceEEEEeecccC-CCceecceEEEEEecCCCeEEEEecCCCceE
Q 044581 87 SHIRVRIISKELK-SGRLYLKKGEVVDVVGPTMCDISMDESGELI 130 (203)
Q Consensus 87 ~~I~VRIidk~~~-~Gk~y~kKGvV~dV~~~~~c~V~l~d~g~~v 130 (203)
-.++|-|=+-+|+ .|+.+++.|.|+|+.-++..+++++-.++.+
T Consensus 91 GsLVVmiGnY~~kGPg~qfgkpGkiId~aiPGVTtlklDm~~~Rv 135 (154)
T 3gzb_A 91 GSLVVMIGNYHFKGPGEQFGKPGKIIDVAIPAVTSLKLDMLNRRV 135 (154)
T ss_dssp TTEEEEEEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEETTTTEE
T ss_pred CcEEEEEcceeecCchHHcCCCCceEEEecCceEEEeecCCccch
Confidence 3456666665564 5778899999999977899999998777555
No 69
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=41.77 E-value=80 Score=21.97 Aligned_cols=57 Identities=9% Similarity=-0.094 Sum_probs=41.0
Q ss_pred ecCCCCCcEEEEe-ccccCcEEEEEEeeCCCceEEEEECCCCcEEEeeccchhcccCCC
Q 044581 141 ALPRRGGPVLVLY-GRHKGVYGNLVDRDLDRETGVVRDADTHELVNVKLEQIAEYIGDP 198 (203)
Q Consensus 141 VIPk~g~~V~VV~-G~~rG~~G~Li~iD~~k~~a~V~L~~~~~i~~l~~ddvck~~g~~ 198 (203)
..|+.|+.+.+.. ....=..|+++++..+ ..+.|.+.+=|....+++++|..+..++
T Consensus 26 ~~~~~G~~c~a~~~~d~~wyRA~I~~~~~~-~~~~V~fvDyGn~e~v~~~~lr~l~~~f 83 (94)
T 3fdr_A 26 LTVHVGDIVAAPLPTNGSWYRARVLGTLEN-GNLDLYFVDFGDNGDCPLKDLRALRSDF 83 (94)
T ss_dssp CCCCTTCEEEEEETTTTEEEEEEEEEECTT-SCEEEEETTTCCEEEECGGGCEECCGGG
T ss_pred CCCCCCCEEEEEECCCCeEEEEEEEEECCC-CeEEEEEEcCCCeEEEEHHHhhhcCHHH
Confidence 4688899888864 3334466778888653 4688888776778889999998776544
No 70
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=40.72 E-value=71 Score=25.20 Aligned_cols=65 Identities=9% Similarity=0.075 Sum_probs=47.6
Q ss_pred CCceecceEEEEEecCCCeEEEEecCCCceEeccccCceeeecCCCCCcEEEEeccccCcEEEEEEee
Q 044581 100 SGRLYLKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLETALPRRGGPVLVLYGRHKGVYGNLVDRD 167 (203)
Q Consensus 100 ~Gk~y~kKGvV~dV~~~~~c~V~l~d~g~~v~~V~q~~LETVIPk~g~~V~VV~G~~rG~~G~Li~iD 167 (203)
.|+. -|+|+.+++++.+.|.+.+....+-.|+..+=-.|-=..|+.|+|-.-+|--..|.++-+-
T Consensus 30 ege~---~g~V~e~lgn~~f~V~l~nG~~~La~I~GKmRk~IwI~~GD~VlVe~~~yd~~KG~Ii~r~ 94 (143)
T 1d7q_A 30 DGQE---YAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKY 94 (143)
T ss_dssp TTEE---EEEEEEECSSSEEEEEETTTEEEEEECCSGGGGSCCCCTTCEEEEECSSSSSSCCEEEEEE
T ss_pred CCEE---EEEEEEEcCCCEEEEEeCCCCEEEEEecccceeeEEecCCCEEEEeeccCCCCeEEEEEEe
Confidence 4554 4579999999999999986656666677766666666678888887666665667777664
No 71
>1jb0_E Photosystem 1 reaction centre subunit IV; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: b.34.4.2 PDB: 3pcq_E*
Probab=39.85 E-value=43 Score=23.86 Aligned_cols=36 Identities=22% Similarity=0.250 Sum_probs=29.7
Q ss_pred CCCCcEEEEecc--ccCcEEEEEEeeCC---CceEEEEECC
Q 044581 144 RRGGPVLVLYGR--HKGVYGNLVDRDLD---RETGVVRDAD 179 (203)
Q Consensus 144 k~g~~V~VV~G~--~rG~~G~Li~iD~~---k~~a~V~L~~ 179 (203)
+.|..|+|++=+ +-..+|++.++|.+ ++-++|+++.
T Consensus 2 ~RGskVrIlR~ESYWyn~vGtVasVD~s~gi~YPV~VRFdk 42 (75)
T 1jb0_E 2 QRGSKVKILRPESYWYNEVGTVASVDQTPGVKYPVIVRFDK 42 (75)
T ss_dssp CTTCEEEECCTTCTTBTCEEEEEEECCCTTCSCCEEEECSS
T ss_pred CCCCEEEEccccceeecCcceEEEEecCCCccccEEEEEee
Confidence 357899999755 46889999999986 7889999864
No 72
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.69 E-value=80 Score=22.12 Aligned_cols=53 Identities=21% Similarity=0.381 Sum_probs=35.2
Q ss_pred CCCCcccCceEEEEeecccCCCceecceEEEEEecC-CCeEEEEecCCCceEeccccCceeee
Q 044581 80 YNVPWLRSHIRVRIISKELKSGRLYLKKGEVVDVVG-PTMCDISMDESGELIQGVDQDLLETA 141 (203)
Q Consensus 80 ~~~~Wl~~~I~VRIidk~~~~Gk~y~kKGvV~dV~~-~~~c~V~l~d~g~~v~~V~q~~LETV 141 (203)
...-|.-.+...|= .||.||. |.|+.|.. ...|.|.+.|+.+.. +.-.+|.+.
T Consensus 7 ~~~f~eGqdVLarW-----sDGlfYl--GtV~kV~~~~~~ClV~FeD~s~~w--v~~kdi~~~ 60 (68)
T 2e5p_A 7 GPRLWEGQDVLARW-----TDGLLYL--GTIKKVDSAREVCLVQFEDDSQFL--VLWKDISPA 60 (68)
T ss_dssp CCCCCTTCEEEEEC-----TTSSEEE--EEEEEEETTTTEEEEEETTTEEEE--EETTTEECC
T ss_pred CcccccCCEEEEEe-----cCCcEEE--eEEEEEecCCcEEEEEEccCCeee--eeeeccccc
Confidence 34456656655543 3899995 78899876 578999998765433 555566553
No 73
>4a18_E RPL6; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_E 4a1b_E 4a1d_E
Probab=37.81 E-value=73 Score=26.42 Aligned_cols=39 Identities=8% Similarity=-0.009 Sum_probs=30.1
Q ss_pred CCCCcccCceEEEEeecccCCCceecceEEEEEecCCCeEEEEe
Q 044581 80 YNVPWLRSHIRVRIISKELKSGRLYLKKGEVVDVVGPTMCDISM 123 (203)
Q Consensus 80 ~~~~Wl~~~I~VRIidk~~~~Gk~y~kKGvV~dV~~~~~c~V~l 123 (203)
.-..-+.||-+|-|. .|+|.|+++|+...++.+.|-|.-
T Consensus 40 klr~si~pGtVlIiL-----~Gr~~GKrvV~LKql~sgllLVtG 78 (191)
T 4a18_E 40 KLRNDIAPGTVLILL-----AGRFRGKRVVFLKQLKSGLLLVTG 78 (191)
T ss_dssp CCCTTCCTTEEEEEC-----SSTTTTBEEEEEEECTTSCEEEEC
T ss_pred hhhccccCCCEEEEe-----ccccCCCEEEEEEecCCCeEEEec
Confidence 334567889888776 799999999999998777665553
No 74
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.72 E-value=96 Score=21.51 Aligned_cols=53 Identities=15% Similarity=-0.006 Sum_probs=39.8
Q ss_pred ecCCCCCcEEEEeccccCcEEEEEEeeCCCceEEEEECCCCcEEEeeccchhccc
Q 044581 141 ALPRRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVRDADTHELVNVKLEQIAEYI 195 (203)
Q Consensus 141 VIPk~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~L~~~~~i~~l~~ddvck~~ 195 (203)
..|+.|+.|+-..-.-.=.-|++.+++.+ ..+.|.+.+ ....++++.+|.-+.
T Consensus 8 ~~~kvGd~clA~wsDg~~Y~A~I~~v~~~-~~~~V~f~D-yn~e~v~~~~lrplp 60 (74)
T 2equ_A 8 FDFKAGEEVLARWTDCRYYPAKIEAINKE-GTFTVQFYD-GVIRCLKRMHIKAMP 60 (74)
T ss_dssp CCCCTTCEEEEECSSSSEEEEEEEEESTT-SSEEEEETT-SCEEEECGGGEECCC
T ss_pred CCCCCCCEEEEECCCCCEEEEEEEEECCC-CEEEEEEec-CCeEEecHHHCeeCC
Confidence 46888999999865434577899999875 467888875 467778888887664
No 75
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.37 E-value=69 Score=22.13 Aligned_cols=51 Identities=16% Similarity=0.221 Sum_probs=33.3
Q ss_pred CCCcccCceEEEEeecccCCCceecceEEEEEecC-CCeEEEEecCCCceEeccccCceee
Q 044581 81 NVPWLRSHIRVRIISKELKSGRLYLKKGEVVDVVG-PTMCDISMDESGELIQGVDQDLLET 140 (203)
Q Consensus 81 ~~~Wl~~~I~VRIidk~~~~Gk~y~kKGvV~dV~~-~~~c~V~l~d~g~~v~~V~q~~LET 140 (203)
..-|.-.+...+= .||.||. |.|+.|.. ...|.|.+.|+.+.- +.-.+|.+
T Consensus 6 ~~f~eGqdVLarW-----sDGlfYl--gtV~kV~~~~~~ClV~FeD~s~~w--v~~kdi~~ 57 (63)
T 2e5q_A 6 SGLTEGQYVLCRW-----TDGLYYL--GKIKRVSSSKQSCLVTFEDNSKYW--VLWKDIQH 57 (63)
T ss_dssp CCCCTTCEEEEEC-----TTSCEEE--EEECCCCSTTSEEEEEETTSCEEE--EEGGGEEC
T ss_pred cceecCCEEEEEe-----cCCCEEE--EEEEEEecCCCEEEEEEccCceeE--EEeecccc
Confidence 3445555555443 3899995 78899865 467999998765544 44455544
No 76
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=35.68 E-value=75 Score=21.99 Aligned_cols=42 Identities=12% Similarity=0.165 Sum_probs=30.8
Q ss_pred CCCceecceEEEEEecC-CCeEEEEecCCCceEeccccCceeeecC
Q 044581 99 KSGRLYLKKGEVVDVVG-PTMCDISMDESGELIQGVDQDLLETALP 143 (203)
Q Consensus 99 ~~Gk~y~kKGvV~dV~~-~~~c~V~l~d~g~~v~~V~q~~LETVIP 143 (203)
.||.+| -++|.++.. ..+|.|...+=|..- .|+.++|-++.+
T Consensus 30 ~Dg~wY--RA~I~~i~~~~~~~~V~fvDYGN~e-~V~~~~Lr~l~~ 72 (77)
T 3pnw_C 30 EDNKFY--RAEVEALHSSGMTAVVKFIDYGNYE-EVLLSNIKPIQT 72 (77)
T ss_dssp TTTEEE--EEEEEEECTTSSEEEEEETTTCCEE-EEEGGGEECC--
T ss_pred CCCCEE--EEEEEEEeCCCCEEEEEEEcCCCeE-EEeHHHeEECCh
Confidence 378888 488999975 468999998866644 688888887654
No 77
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=35.68 E-value=91 Score=22.06 Aligned_cols=60 Identities=15% Similarity=0.174 Sum_probs=37.5
Q ss_pred ceEEEEEecCCCeEEEEecCCCceEeccccCcee-eecCCCCCcEEEEeccccCcEEEEEE
Q 044581 106 KKGEVVDVVGPTMCDISMDESGELIQGVDQDLLE-TALPRRGGPVLVLYGRHKGVYGNLVD 165 (203)
Q Consensus 106 kKGvV~dV~~~~~c~V~l~d~g~~v~~V~q~~LE-TVIPk~g~~V~VV~G~~rG~~G~Li~ 165 (203)
..|+|...++++.+.|.+.+....+-.++-.+-- -+-|..|+.|.|-.-+|--..|.++-
T Consensus 16 ~~G~Vik~l~n~~f~V~l~nG~~~~c~i~GK~Rk~~I~Il~GD~V~ve~~~yd~~kgrIi~ 76 (79)
T 3i4o_A 16 VEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDLSRGRIVY 76 (79)
T ss_dssp EEEEEEEEETTTEEEEEETTSCEEEEEECHHHHHTTCCCCTTCEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEEcCCCEEEEEeCCCCEEEEEeCcceecCCccCCCCCEEEEEECccCCCcEEEEE
Confidence 4688888887788888887533333333333322 34578899988866666555555543
No 78
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=34.81 E-value=36 Score=24.62 Aligned_cols=57 Identities=12% Similarity=0.039 Sum_probs=38.9
Q ss_pred CCCcccCceEEEEeecccCCCceecceEEEEEecCCCeEEEEecCCCceEeccccCceeeecC
Q 044581 81 NVPWLRSHIRVRIISKELKSGRLYLKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLETALP 143 (203)
Q Consensus 81 ~~~Wl~~~I~VRIidk~~~~Gk~y~kKGvV~dV~~~~~c~V~l~d~g~~v~~V~q~~LETVIP 143 (203)
...|. +|-.+-.. ...+|.+| -+.|.++.+...|.|.+.|=|... .|+.++|-+..|
T Consensus 30 ~~~~~-~G~~c~a~--~~~d~~wy--RA~V~~~~~~~~~~V~fvDyGn~e-~v~~~~Lr~l~~ 86 (110)
T 2diq_A 30 DLTVH-VGDIVAAP--LPTNGSWY--RARVLGTLENGNLDLYFVDFGDNG-DCPLKDLRALRS 86 (110)
T ss_dssp CCCCC-TTCEEEEC--CTTTCSCE--EEEECCCCSSSCEEEEETTTCCEE-EECGGGCEECCH
T ss_pred CCCCC-CCCEEEEE--ECCCCeEE--EEEEEEECCCCeEEEEEEeCCCeE-EEehHHhhcCcH
Confidence 34564 45444332 11367787 578899876678999999888765 688888877654
No 79
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=34.10 E-value=67 Score=25.16 Aligned_cols=52 Identities=17% Similarity=0.118 Sum_probs=36.2
Q ss_pred CcccCceEEEEeecccCCCceecceEEEEEecC-CCeEEEEe--cCCCceEeccccCceee
Q 044581 83 PWLRSHIRVRIISKELKSGRLYLKKGEVVDVVG-PTMCDISM--DESGELIQGVDQDLLET 140 (203)
Q Consensus 83 ~Wl~~~I~VRIidk~~~~Gk~y~kKGvV~dV~~-~~~c~V~l--~d~g~~v~~V~q~~LET 140 (203)
.-+.+|=.|+|+ +|.|-+..|+|..+.. ...+.|.+ ..-...+ .++.+++|.
T Consensus 126 ~~~~~Gd~V~V~-----~GPf~g~~G~v~~v~~~k~r~~V~v~ifgr~t~v-el~~~qvek 180 (181)
T 2jvv_A 126 TLFEPGEMVRVN-----DGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPV-ELDFSQVEK 180 (181)
T ss_dssp CCCCTTEEEEEC-----SSTTTTEEEEEEEEETTTTEEEEEEEETTEEEEE-EECTTTEEE
T ss_pred ccCCCCCEEEEe-----ccCCCCcEEEEEEEeCCCCEEEEEEEECCCCEEE-EECHHHEEE
Confidence 356789999999 6888899999999975 34665444 4222334 577666664
No 80
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=33.57 E-value=1.2e+02 Score=21.69 Aligned_cols=45 Identities=24% Similarity=0.216 Sum_probs=32.3
Q ss_pred CCcEEEEeccccCcEEEEEEeeCCCceEEEEECCCCcEEEeeccch
Q 044581 146 GGPVLVLYGRHKGVYGNLVDRDLDRETGVVRDADTHELVNVKLEQI 191 (203)
Q Consensus 146 g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~L~~~~~i~~l~~ddv 191 (203)
|..|++-.-.-+=..|+++.++..+..+.|++.+ +...-+.+.||
T Consensus 30 GeDVLarwsDGlfYLGTI~kV~~~~e~ClV~F~D-~S~~W~~~kdi 74 (79)
T 2m0o_A 30 GQDVLARWTDGLLYLGTIKKVDSAREVCLVQFED-DSQFLVLWKDI 74 (79)
T ss_dssp TCEEEBCCTTSCCCEEEEEEEETTTTEEEEEETT-SCEEEEETTTB
T ss_pred CCEEEEEecCCCEEeEEEEEeccCCCEEEEEEcC-CCeEEEEeecc
Confidence 4556665544466899999999999999999875 44444555554
No 81
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=33.17 E-value=98 Score=19.95 Aligned_cols=53 Identities=17% Similarity=0.103 Sum_probs=38.7
Q ss_pred CCCCCcEEEEec-cccCcEEEEEEeeCCCceEEEEECCCCcEEEeeccchhccc
Q 044581 143 PRRGGPVLVLYG-RHKGVYGNLVDRDLDRETGVVRDADTHELVNVKLEQIAEYI 195 (203)
Q Consensus 143 Pk~g~~V~VV~G-~~rG~~G~Li~iD~~k~~a~V~L~~~~~i~~l~~ddvck~~ 195 (203)
.+.|+.++...- .-.=..|++.+++.+...+.|...+=+..-.+++.+|..+.
T Consensus 4 ~~~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~f~DYGn~e~v~~~~Lr~~~ 57 (59)
T 1mhn_A 4 WKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPI 57 (59)
T ss_dssp CCTTCEEEEECTTTSCEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGGCBCTT
T ss_pred CCcCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEcCCCEEEEcHHHeeCCC
Confidence 466777777742 23446788999987666889998765667789999987653
No 82
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.68 E-value=1.5e+02 Score=22.08 Aligned_cols=49 Identities=10% Similarity=0.140 Sum_probs=30.8
Q ss_pred eEEEEEecCCCeEEEEecCCCceEeccccCceeeecCCCCCcEEEEecc
Q 044581 107 KGEVVDVVGPTMCDISMDESGELIQGVDQDLLETALPRRGGPVLVLYGR 155 (203)
Q Consensus 107 KGvV~dV~~~~~c~V~l~d~g~~v~~V~q~~LETVIPk~g~~V~VV~G~ 155 (203)
-|+|+..++++.+.|.+.+....+-.|+..+=-.|-=..|+.|+|-.-+
T Consensus 18 ~g~V~~~lgn~~f~V~l~nG~~~la~i~GK~Rk~IwI~~GD~VlVe~~~ 66 (111)
T 2dgy_A 18 IVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVDPIE 66 (111)
T ss_dssp EEEEEECCSSSEEEEECTTSCEEEEECCTTCCSCCCCCSSCEEEEEECS
T ss_pred EEEEEEeCCCCEEEEEeCCCCEEEEEechhhcccEEEcCCCEEEEEecc
Confidence 5688999988899999886555554555544444444445555554433
No 83
>4a18_N RPL27, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_N 4a1b_N 4a1d_N
Probab=32.45 E-value=49 Score=26.31 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=19.0
Q ss_pred CCcEEEEeccccCcEEEEEEeeCC
Q 044581 146 GGPVLVLYGRHKGVYGNLVDRDLD 169 (203)
Q Consensus 146 g~~V~VV~G~~rG~~G~Li~iD~~ 169 (203)
|.-|+|+.|.|+|..+.++..-.+
T Consensus 8 GrVvivl~Gr~aGkkaVIvk~iD~ 31 (144)
T 4a18_N 8 GRVVILLQGRFAGKKAVIVKSSED 31 (144)
T ss_dssp TEEEEECSSTTTTCEEEEEEEESS
T ss_pred CeEEEEecCCcCCCEEEEEEecCC
Confidence 445677799999999999987544
No 84
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.21 E-value=61 Score=23.53 Aligned_cols=57 Identities=11% Similarity=-0.066 Sum_probs=39.2
Q ss_pred eecCCCCCcEEEEeccc-cCcEEEEEEeeCCCceEEEEECCCCcEEEeeccchhcccCC
Q 044581 140 TALPRRGGPVLVLYGRH-KGVYGNLVDRDLDRETGVVRDADTHELVNVKLEQIAEYIGD 197 (203)
Q Consensus 140 TVIPk~g~~V~VV~G~~-rG~~G~Li~iD~~k~~a~V~L~~~~~i~~l~~ddvck~~g~ 197 (203)
|+.|+.|..|-+.--.. .=..|+++.++.+. .+.|.+-+=|....++.+.|-.+..+
T Consensus 19 ~~~~k~g~~vaak~~d~n~WyRakV~~v~~~~-~veVl~~DyGn~~~V~~~~LR~L~~~ 76 (85)
T 2eqk_A 19 PVKWENDMHCAVKIQDKNQWRRGQIIRMVTDT-LVEVLLYDVGVELVVNVDCLRKLEEN 76 (85)
T ss_dssp CCCCCSSCEEEEECSSSCCEEEEEEEEECSSS-EEEEECTTTCCEEEEETTTEEECCHH
T ss_pred ccCccCCCEEEEEeCCCCeEEEEEEEEecCCC-eEEEEEEccCCEEEEEccccccCCHH
Confidence 78899998877763221 44578888888875 48887776565666777776665433
No 85
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=32.05 E-value=70 Score=25.06 Aligned_cols=54 Identities=15% Similarity=0.110 Sum_probs=36.8
Q ss_pred cccCceEEEEeecccCCCceecceEEEEEecCCCeEEEEecCCCceEeccccCceeeecCC
Q 044581 84 WLRSHIRVRIISKELKSGRLYLKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLETALPR 144 (203)
Q Consensus 84 Wl~~~I~VRIidk~~~~Gk~y~kKGvV~dV~~~~~c~V~l~d~g~~v~~V~q~~LETVIPk 144 (203)
| .+|-.+-..-. .+|.+| .|.|.++.+ .+|.|.+.|-|... .++.+.|-++.|.
T Consensus 52 ~-~~g~~c~a~~~--~d~~wy--Ra~V~~v~~-~~~~V~~vDyG~~~-~v~~~~l~~l~~~ 105 (218)
T 2wac_A 52 P-KRGDLVAAQFT--LDNQWY--RAKVERVQG-SNATVLYIDYGNKE-TLPTNRLAALPPA 105 (218)
T ss_dssp C-CTTCEEEEECT--TTCCEE--EEEEEEEET-TEEEEEETTTCCEE-EEEGGGEEECCGG
T ss_pred C-CcCCEEEEEEC--CCCeEE--EEEEEEecC-CeEEEEEEecCCeE-EEchHHcccCChh
Confidence 5 45554443311 257776 588999986 89999998877765 6887778776553
No 86
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=31.70 E-value=65 Score=25.43 Aligned_cols=47 Identities=17% Similarity=0.181 Sum_probs=31.4
Q ss_pred CCcEEEEe----ccccCcEEEEEEeeCCCceEEEEECC--CCcEEEeeccchhcc
Q 044581 146 GGPVLVLY----GRHKGVYGNLVDRDLDRETGVVRDAD--THELVNVKLEQIAEY 194 (203)
Q Consensus 146 g~~V~VV~----G~~rG~~G~Li~iD~~k~~a~V~L~~--~~~i~~l~~ddvck~ 194 (203)
|..|.|-. ...+-..|+|.+.+.+ .+++.+.. .+..+.++|++|.+-
T Consensus 104 G~~V~V~l~~~~~g~k~~~G~L~~~~~~--~v~l~~~~k~~~~~~~i~~~~I~ka 156 (164)
T 1ib8_A 104 GKYIHVGLYQAIDKQKVFEGTLLAFEED--ELTMEYMDKTRKKTVQIPYSLVSKA 156 (164)
T ss_dssp SEEEEEECSSCSSSCSEEEEEEEEEETT--EEEEEEECSSCEEEEEECSSCCSSC
T ss_pred CcEEEEEEecccCCceEEEEEEEEEeCC--EEEEEEecccCCeEEEEEHHHCcEE
Confidence 56677753 1234468999999987 55665543 234677999998764
No 87
>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A
Probab=31.49 E-value=1.8e+02 Score=22.48 Aligned_cols=65 Identities=18% Similarity=0.187 Sum_probs=44.5
Q ss_pred CCceecceEEEEEecCCCeEEEEecCCCceEeccccCcee--eecCCCCCcEEEEeccccCcEEEEEEeeCC
Q 044581 100 SGRLYLKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLE--TALPRRGGPVLVLYGRHKGVYGNLVDRDLD 169 (203)
Q Consensus 100 ~Gk~y~kKGvV~dV~~~~~c~V~l~d~g~~v~~V~q~~LE--TVIPk~g~~V~VV~G~~rG~~G~Li~iD~~ 169 (203)
++-|| -|.|.....++...|.++|+.... +..+++= -.|| .|-.|.-+.+..-+..|.+++...+
T Consensus 18 n~~yY--pG~V~~~~~~~ky~V~FdDg~~~~--v~~k~iiv~d~ip-~g~~V~A~teddy~~~GiI~~~k~~ 84 (123)
T 2g3r_A 18 NGYFY--SGKITRDVGAGKYKLLFDDGYECD--VLGKDILLCDPIP-LDTEVTALSEDEYFSAGVVKGHRKE 84 (123)
T ss_dssp TCCEE--EEEEEEEEETTEEEEEETTSCEEE--EEGGGEECCSSCC-TTCEEEEECTTSCEEEEEEEEEEEE
T ss_pred CCcCc--ccEEEEeccCCeEEEEEcCCCeeE--eecceEEEecccC-CCcEEEEeecCccccceEEEEEecC
Confidence 34465 688877777778889998765443 4444442 1245 3778999998889999999976543
No 88
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=31.41 E-value=1.5e+02 Score=21.45 Aligned_cols=53 Identities=15% Similarity=0.047 Sum_probs=42.5
Q ss_pred cCCCCCcEEEEeccccCcEEEEEEeeCCCceEEEEECCCCcEEEeeccchhcccC
Q 044581 142 LPRRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVRDADTHELVNVKLEQIAEYIG 196 (203)
Q Consensus 142 IPk~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~L~~~~~i~~l~~ddvck~~g 196 (203)
.=+.|+.||--.|.-+=.-|++.+++.+ ...+|++.+ +.+.+|...+|-.+..
T Consensus 21 ~f~vGd~VlArW~D~~yYPAkI~sV~~~-~~YtV~F~D-G~~etvk~~~IKp~~~ 73 (85)
T 3qii_A 21 EFQINEQVLACWSDCRFYPAKVTAVNKD-GTYTVKFYD-GVVQTVKHIHVKAFSK 73 (85)
T ss_dssp CCCTTCEEEEECTTSCEEEEEEEEECTT-SEEEEEETT-SCEEEEEGGGEEECC-
T ss_pred ccccCCEEEEEeCCCCEeeEEEEEECCC-CeEEEEEeC-CCeEEecHHHcccCCh
Confidence 3356899999988778889999999997 368898886 7788899888877644
No 89
>3iz5_N 60S ribosomal protein L14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_N
Probab=30.85 E-value=37 Score=26.59 Aligned_cols=31 Identities=29% Similarity=0.319 Sum_probs=24.4
Q ss_pred CCCCcEEEEeccccCcEEEEEEeeCCCceEEE
Q 044581 144 RRGGPVLVLYGRHKGVYGNLVDRDLDRETGVV 175 (203)
Q Consensus 144 k~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V 175 (203)
+.|.-|.|+.|.|.|..+.++++-.++ .+.|
T Consensus 8 evGRVV~i~~Gr~aGk~avIV~iiD~~-rvLV 38 (134)
T 3iz5_N 8 EIGRVALVNYGKDYGRLVVIVDVVDQN-RALV 38 (134)
T ss_dssp CSSEEEECSCCSSSCCEEEEEEECSSS-EEEE
T ss_pred ccCeEEEEeeCCCCCCEEEEEEEcCCC-eEEE
Confidence 456667888999999999999986653 5555
No 90
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=29.88 E-value=34 Score=27.87 Aligned_cols=55 Identities=11% Similarity=-0.019 Sum_probs=36.4
Q ss_pred ecCCCCCcEEEEeccccCcEEEEEEeeCCCceEEEEECCCCcEEEeeccchhcccC
Q 044581 141 ALPRRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVRDADTHELVNVKLEQIAEYIG 196 (203)
Q Consensus 141 VIPk~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~L~~~~~i~~l~~ddvck~~g 196 (203)
..|+.|..+....-...=..|++++++.+ ..+.|.+.+-|....+++.+|..+..
T Consensus 64 ~~~~~G~~c~a~~~d~~wyRa~V~~~~~~-~~~~V~~vDyGn~~~v~~~~lr~l~~ 118 (246)
T 2hqx_A 64 YAPRRGEFCIAKFVDGEWYRARVEKVESP-AKIHVFYIDYGNREVLPSTRLGTLSP 118 (246)
T ss_dssp CCCCTTCEEEEECTTSCEEEEEEEEEEET-TEEEEEETTTCCEEEECGGGEECCCG
T ss_pred CCCCCCCEEEEEcCCCCEEEEEEEEEcCC-CeEEEEEEeCCCeEEEeHHHhhcCCH
Confidence 35677887777642222355777887653 27888877667777788888776643
No 91
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.93 E-value=1.5e+02 Score=20.72 Aligned_cols=51 Identities=22% Similarity=0.150 Sum_probs=35.9
Q ss_pred CCcEEEEeccccCcEEEEEEeeCCCceEEEEECCCCcEEEeeccchhcccCC
Q 044581 146 GGPVLVLYGRHKGVYGNLVDRDLDRETGVVRDADTHELVNVKLEQIAEYIGD 197 (203)
Q Consensus 146 g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~L~~~~~i~~l~~ddvck~~g~ 197 (203)
|..|+.=.-.=.=..|++..++..+..+.|++.+ +...-+.+.||-..+-+
T Consensus 13 GqdVLarWsDGlfYlGtV~kV~~~~~~ClV~FeD-~s~~wv~~kdi~~~~~~ 63 (68)
T 2e5p_A 13 GQDVLARWTDGLLYLGTIKKVDSAREVCLVQFED-DSQFLVLWKDISPAALS 63 (68)
T ss_dssp TCEEEEECTTSSEEEEEEEEEETTTTEEEEEETT-TEEEEEETTTEECCCSS
T ss_pred CCEEEEEecCCcEEEeEEEEEecCCcEEEEEEcc-CCeeeeeeecccccccC
Confidence 4445443322234689999999999999999874 55666888888877643
No 92
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=28.67 E-value=1.1e+02 Score=19.20 Aligned_cols=49 Identities=22% Similarity=0.184 Sum_probs=32.0
Q ss_pred CCCCcEEEEec-cccCcEEEEEEeeCCCceEEEEECCCCcEEEeeccchh
Q 044581 144 RRGGPVLVLYG-RHKGVYGNLVDRDLDRETGVVRDADTHELVNVKLEQIA 192 (203)
Q Consensus 144 k~g~~V~VV~G-~~rG~~G~Li~iD~~k~~a~V~L~~~~~i~~l~~ddvc 192 (203)
+.|+.++.... .-.=..|++++++.+...+.|...+=+..-.+++.+|.
T Consensus 3 k~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~fvDYGn~e~v~~~~lr 52 (54)
T 3s6w_A 3 KPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIK 52 (54)
T ss_dssp CTTCEEEEEETTTTEEEEEEEEEC--CCSEEEEEETTTCCEEEEEGGGEE
T ss_pred CCCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEccCCeEEEeHHHEE
Confidence 34666666642 22345688899887666788888765667778888875
No 93
>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A
Probab=28.53 E-value=37 Score=24.74 Aligned_cols=31 Identities=26% Similarity=0.187 Sum_probs=22.5
Q ss_pred CCCCcEEEEeccccCcEEEEEEeeCCCceEEE
Q 044581 144 RRGGPVLVLYGRHKGVYGNLVDRDLDRETGVV 175 (203)
Q Consensus 144 k~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V 175 (203)
..|.-|.++.|.|+|..+.++++-.+. .+.|
T Consensus 5 ~~GrVv~~~~Gr~~Gk~~VIv~~iD~~-~vLV 35 (96)
T 2joy_A 5 EVGRICVKVKGREAGSKCVIVDIIDDN-FVLV 35 (96)
T ss_dssp STTEEEECSSSSTTCCEEEEEEECSSS-CEEE
T ss_pred ccCEEEEEeecCCCCCEEEEEEEeCCC-EEEE
Confidence 345567777999999999999984332 4554
No 94
>3izc_N 60S ribosomal protein RPL14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_N 3o58_N 3o5h_N 3u5e_M 3u5i_M 4b6a_M
Probab=27.88 E-value=43 Score=26.40 Aligned_cols=31 Identities=19% Similarity=0.272 Sum_probs=24.3
Q ss_pred CCCCcEEEEeccccCcEEEEEEeeCCCceEEE
Q 044581 144 RRGGPVLVLYGRHKGVYGNLVDRDLDRETGVV 175 (203)
Q Consensus 144 k~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V 175 (203)
+.|.-|.|+.|.|.|..+.++++-.++ .+.|
T Consensus 16 e~GrVV~i~~Gr~aGk~avIV~iiD~~-rVLV 46 (138)
T 3izc_N 16 EVGRVVLIKKGQSAGKLAAIVEIIDQK-KVLI 46 (138)
T ss_dssp STTEEEECCSCSSSCCEEEEEEECSSS-EEEE
T ss_pred ccCeEEEEeeCCCCCCEEEEEEEecCC-EEEE
Confidence 346667788999999999999986653 5665
No 95
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=27.80 E-value=87 Score=29.02 Aligned_cols=91 Identities=11% Similarity=0.016 Sum_probs=58.1
Q ss_pred eEEEEEecCCCeEEEEecCCCceEecc----cc-----Ccee-eecCCCCCcEEEEeccccCcEEEEEEeeCCCceEEEE
Q 044581 107 KGEVVDVVGPTMCDISMDESGELIQGV----DQ-----DLLE-TALPRRGGPVLVLYGRHKGVYGNLVDRDLDRETGVVR 176 (203)
Q Consensus 107 KGvV~dV~~~~~c~V~l~d~g~~v~~V----~q-----~~LE-TVIPk~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V~ 176 (203)
...|..|.+++.+-|++.+....++.+ .+ ..|. +..|..|..+++..-.-.=..|++++++.. ..+.|.
T Consensus 366 ~V~Vt~V~sp~~Fyvq~~~~~~~l~~l~~~l~~~~~~~~~l~~~~~~~~G~~c~a~~~d~~wyRa~I~~v~~~-~~~~V~ 444 (570)
T 3bdl_A 366 PVFVTEITDDLHFYVQDVETGTQLEKLMENMRNDIASHPPVEGSYAPRRGEFCIAKFVDGEWYRARVEKVESP-AKIHVF 444 (570)
T ss_dssp EEEEEEECTTSEEEEEEGGGHHHHHHHHHHHHHHHHHSCCCTTCCCCCTTCEEEEECTTSCEEEEEEEEEEET-TEEEEE
T ss_pred EEEEEEEECCCeEEEEECCcHHHHHHHHHHHHHHHhcCCCCCCCcCCCcCCEEEEEECCCCEEEEEEEEEcCC-CeEEEE
Confidence 578889988888888887543212111 11 1121 235778888877652222356777777763 478888
Q ss_pred ECCCCcEEEeeccchhcccCCC
Q 044581 177 DADTHELVNVKLEQIAEYIGDP 198 (203)
Q Consensus 177 L~~~~~i~~l~~ddvck~~g~~ 198 (203)
+.+-+....+++.+|..+..++
T Consensus 445 fvDyGn~e~v~~~~Lr~l~~~f 466 (570)
T 3bdl_A 445 YIDYGNREVLPSTRLGTLSPAF 466 (570)
T ss_dssp ETTTCCEEEECGGGEECCCGGG
T ss_pred EEeCCCeEEEEHHHCccCCHHH
Confidence 8776777788888888876544
No 96
>4a18_F RPL14; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_F 4a1b_F 4a1d_F 4adx_7
Probab=27.07 E-value=69 Score=24.81 Aligned_cols=29 Identities=24% Similarity=0.329 Sum_probs=22.7
Q ss_pred CCcEEEEeccccCcEEEEEEeeCCCceEEE
Q 044581 146 GGPVLVLYGRHKGVYGNLVDRDLDRETGVV 175 (203)
Q Consensus 146 g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V 175 (203)
|.-|.|..|.|.|..+.++++-..+ .+.|
T Consensus 10 GRVv~i~~G~~aGklavIVdIID~n-rvLV 38 (126)
T 4a18_F 10 GRVVYINYGADKGKLAVIVNIINQN-RILI 38 (126)
T ss_dssp TEEEEECSSTTTTEEEEEEEEETTT-EEEE
T ss_pred ceEEEEccCCccCCEEEEEEEecCC-eEEE
Confidence 5557777999999999999986553 5665
No 97
>1jb0_E Photosystem 1 reaction centre subunit IV; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: b.34.4.2 PDB: 3pcq_E*
Probab=26.26 E-value=1.8e+02 Score=20.67 Aligned_cols=56 Identities=20% Similarity=0.245 Sum_probs=38.0
Q ss_pred CceEEEEeecccCCCceecceEEEEEecC----CCeEEEEecC----------CCceEeccccCceeeecCCC
Q 044581 87 SHIRVRIISKELKSGRLYLKKGEVVDVVG----PTMCDISMDE----------SGELIQGVDQDLLETALPRR 145 (203)
Q Consensus 87 ~~I~VRIidk~~~~Gk~y~kKGvV~dV~~----~~~c~V~l~d----------~g~~v~~V~q~~LETVIPk~ 145 (203)
.+=.|||..+. .=+|+..|.|.+|.. .|-+.|+++. +|-..-+...+.||.|-|.+
T Consensus 3 RGskVrIlR~E---SYWyn~vGtVasVD~s~gi~YPV~VRFdkVNY~g~sG~~~G~nTNnfa~~El~~v~~~~ 72 (75)
T 1jb0_E 3 RGSKVKILRPE---SYWYNEVGTVASVDQTPGVKYPVIVRFDKVNYTGYSGSASGVNTNNFALHEVQEVAPPK 72 (75)
T ss_dssp TTCEEEECCTT---CTTBTCEEEEEEECCCTTCSCCEEEECSSCCSCSSTTCCCCCCEEEECGGGEEECC---
T ss_pred CCCEEEEcccc---ceeecCcceEEEEecCCCccccEEEEEeeecccccccccccccccccCHhHhhccccCC
Confidence 45678888663 247999999999943 4668888872 34444467788888887544
No 98
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=25.73 E-value=1e+02 Score=24.32 Aligned_cols=42 Identities=21% Similarity=0.426 Sum_probs=32.6
Q ss_pred CCceecceEEEEEecCCCeEEEEecCCCceEeccccCceeeecCC
Q 044581 100 SGRLYLKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLETALPR 144 (203)
Q Consensus 100 ~Gk~y~kKGvV~dV~~~~~c~V~l~d~g~~v~~V~q~~LETVIPk 144 (203)
+|.+| -|.|.++.+.+.+.|.+.|-|... .|+.+.|-+..|.
T Consensus 79 d~~wy--Ra~V~~~~~~~~~~V~~vDyG~~~-~v~~~~l~~l~~~ 120 (201)
T 4b9w_A 79 DGNWY--RALVKEILPSGNVKVHFVDYGNVE-EVTTDQLQAILPQ 120 (201)
T ss_dssp TTEEE--EEEEEEECTTSCEEEEETTTCCEE-EECGGGEEECCGG
T ss_pred CCeEE--EEEEEEECCCCeEEEEEEccCCEE-EEEHHHhccChHh
Confidence 67777 578999987778999999888755 6888887766543
No 99
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=25.69 E-value=81 Score=25.56 Aligned_cols=41 Identities=22% Similarity=0.276 Sum_probs=30.4
Q ss_pred CCceecceEEEEEecCCCeEEEEecCCCceEeccccCceeeecC
Q 044581 100 SGRLYLKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLETALP 143 (203)
Q Consensus 100 ~Gk~y~kKGvV~dV~~~~~c~V~l~d~g~~v~~V~q~~LETVIP 143 (203)
+|.+| .+.|.++.+..+|.|.+.|-|... .|+.+.|-++.|
T Consensus 78 d~~wy--Ra~V~~~~~~~~~~V~~vDyGn~~-~v~~~~lr~l~~ 118 (246)
T 2hqx_A 78 DGEWY--RARVEKVESPAKIHVFYIDYGNRE-VLPSTRLGTLSP 118 (246)
T ss_dssp TSCEE--EEEEEEEEETTEEEEEETTTCCEE-EECGGGEECCCG
T ss_pred CCCEE--EEEEEEEcCCCeEEEEEEeCCCeE-EEeHHHhhcCCH
Confidence 57776 578999976679999998877655 577777766543
No 100
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=24.07 E-value=76 Score=23.52 Aligned_cols=61 Identities=13% Similarity=0.124 Sum_probs=38.3
Q ss_pred eEEEEEecCCCeEEEEecCCCceEeccccCceeeecCCCCCcEEEEecccc-CcEEEEEEee
Q 044581 107 KGEVVDVVGPTMCDISMDESGELIQGVDQDLLETALPRRGGPVLVLYGRHK-GVYGNLVDRD 167 (203)
Q Consensus 107 KGvV~dV~~~~~c~V~l~d~g~~v~~V~q~~LETVIPk~g~~V~VV~G~~r-G~~G~Li~iD 167 (203)
-|+|...++++.+.|.+.++...+-.++..+=-.+-=..|+.|+|-.-+|- -..|.++-+-
T Consensus 23 ~g~V~~~lgn~~~~V~l~nG~~~la~i~GKmRk~IwI~~GD~VlVe~~~yd~~~Kg~Iv~r~ 84 (102)
T 1jt8_A 23 LGIIEQMLGASRVRVRCLDGKTRLGRIPGRLKNRIWVREGDVVIVKPWEVQGDQKCDIIWRY 84 (102)
T ss_dssp EEEEECSSCSSEEEEEEETTEEEEEECCHHHHHHHCCCSCEEEEECCBCCTTSEEEEEEEES
T ss_pred EEEEEEEcCCCEEEEEECCCCEEEEEEcccceeeEEecCCCEEEEEeccCCCCceEEEEEEe
Confidence 467888898899999998655555455554443444455777777555554 4455555543
No 101
>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.96 E-value=59 Score=23.19 Aligned_cols=31 Identities=26% Similarity=0.172 Sum_probs=23.2
Q ss_pred CCCCcEEEEeccccCcEEEEEEeeCCCceEEE
Q 044581 144 RRGGPVLVLYGRHKGVYGNLVDRDLDRETGVV 175 (203)
Q Consensus 144 k~g~~V~VV~G~~rG~~G~Li~iD~~k~~a~V 175 (203)
+.|.-|.++.|.|+|..+.++++-.+. .+.|
T Consensus 5 ~~Grvv~~~~Gr~~Gk~~vIv~iiD~~-~vlV 35 (83)
T 3j21_5 5 DVGRIAVVIAGRRAGQKVVVVDIIDKN-FVLV 35 (83)
T ss_dssp CTTEEEECSSSSSSCCCEEEEEECSSS-CEEE
T ss_pred ccCEEEEEeecCCCCCEEEEEEEcCCC-EEEE
Confidence 456667788999999999999974443 4554
No 102
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.86 E-value=1.1e+02 Score=22.25 Aligned_cols=58 Identities=16% Similarity=0.363 Sum_probs=42.4
Q ss_pred CCCcccCceEEEEeecccCCCceecceEEEEEecCCCeEEEEecCCCceEeccccCceeeecCC
Q 044581 81 NVPWLRSHIRVRIISKELKSGRLYLKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLETALPR 144 (203)
Q Consensus 81 ~~~Wl~~~I~VRIidk~~~~Gk~y~kKGvV~dV~~~~~c~V~l~d~g~~v~~V~q~~LETVIPk 144 (203)
...| ..|-.|-..-.. ++++| -|.|..+.+.+.+.|.+.|-|... .|+.+.|-+.-|+
T Consensus 19 ~~~~-k~g~~vaak~~d--~n~Wy--RakV~~v~~~~~veVl~~DyGn~~-~V~~~~LR~L~~~ 76 (85)
T 2eqk_A 19 PVKW-ENDMHCAVKIQD--KNQWR--RGQIIRMVTDTLVEVLLYDVGVEL-VVNVDCLRKLEEN 76 (85)
T ss_dssp CCCC-CSSCEEEEECSS--SCCEE--EEEEEEECSSSEEEEECTTTCCEE-EEETTTEEECCHH
T ss_pred ccCc-cCCCEEEEEeCC--CCeEE--EEEEEEecCCCeEEEEEEccCCEE-EEEccccccCCHH
Confidence 4456 566665554321 44665 688999998888999999988766 7999999887664
No 103
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=23.70 E-value=1.6e+02 Score=22.51 Aligned_cols=32 Identities=19% Similarity=0.318 Sum_probs=24.3
Q ss_pred ccCceEEEEeecccCCCceecceEEEEEecC-CCeEEE
Q 044581 85 LRSHIRVRIISKELKSGRLYLKKGEVVDVVG-PTMCDI 121 (203)
Q Consensus 85 l~~~I~VRIidk~~~~Gk~y~kKGvV~dV~~-~~~c~V 121 (203)
+..|=.|.|+ .|++-|+.|.|..|.. .+...|
T Consensus 43 IkkGD~V~Vi-----~G~dKGk~GkV~~V~~k~~~V~V 75 (120)
T 1vq8_T 43 VNAGDTVEVL-----RGDFAGEEGEVINVDLDKAVIHV 75 (120)
T ss_dssp CCTTCEEEEC-----SSTTTTCEEEEEEEETTTTEEEE
T ss_pred ccCCCEEEEE-----ecCCCCCEEEEEEEECCCCEEEE
Confidence 5667789998 6888899999999974 344433
No 104
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.42 E-value=2.1e+02 Score=21.79 Aligned_cols=39 Identities=31% Similarity=0.271 Sum_probs=27.0
Q ss_pred hHhhhhccCCCCCcccCceEEEEeecccCCCceecceEEEEEecC
Q 044581 71 SERREDNYNYNVPWLRSHIRVRIISKELKSGRLYLKKGEVVDVVG 115 (203)
Q Consensus 71 ~e~~~~~~~~~~~Wl~~~I~VRIidk~~~~Gk~y~kKGvV~dV~~ 115 (203)
+|++.+. +-...-+..|=.|.|+ .|++-|+.|.|..|..
T Consensus 33 keLR~ky-~~r~~~IkkGD~V~Vi-----~GkdKGk~GkV~~V~~ 71 (121)
T 3j21_U 33 RELREKY-KVRNLPVRVGDKVRIM-----RGDYKGHEGKVVEVDL 71 (121)
T ss_dssp HHHHHHT-CCSEEECCSSSEEEEC-----SSSCSSEEEEEEEEET
T ss_pred HHHHHHh-CCcccccccCCEEEEe-----ecCCCCcEeEEEEEEe
Confidence 3444443 2233345667789998 6888999999999974
No 105
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=21.19 E-value=1.2e+02 Score=24.52 Aligned_cols=42 Identities=21% Similarity=0.426 Sum_probs=32.3
Q ss_pred CCceecceEEEEEecCCCeEEEEecCCCceEeccccCceeeecCC
Q 044581 100 SGRLYLKKGEVVDVVGPTMCDISMDESGELIQGVDQDLLETALPR 144 (203)
Q Consensus 100 ~Gk~y~kKGvV~dV~~~~~c~V~l~d~g~~v~~V~q~~LETVIPk 144 (203)
+|.+| -|.|.++.+.+.+.|.+.|-|... .|+.+.|-+..|.
T Consensus 79 d~~Wy--Ra~V~~~~~~~~~~V~~vDyGn~~-~v~~~~l~~l~~~ 120 (226)
T 4b9x_A 79 DGNWY--RALVKEILPSGNVKVHFVDYGNVE-EVTTDQLQAILPQ 120 (226)
T ss_dssp TTEEE--EEEEEEECSSSEEEEECTTTCCEE-EEEGGGEECCCGG
T ss_pred CCeEE--EEEEEEECCCCeEEEEEEecCCEE-EEEHHHhccChHH
Confidence 67777 578999987788999999888755 6777777765543
Done!