Query 044582
Match_columns 202
No_of_seqs 174 out of 535
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 04:44:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044582.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044582hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02309 AUX_IAA: AUX/IAA fami 100.0 3.8E-67 8.1E-72 445.7 0.3 186 9-194 1-215 (215)
2 PF00564 PB1: PB1 domain; Int 97.6 0.00018 3.9E-09 51.7 5.7 67 94-177 3-70 (84)
3 cd06398 PB1_Joka2 The PB1 doma 97.3 0.00065 1.4E-08 51.8 6.2 68 94-178 2-72 (91)
4 cd06407 PB1_NLP A PB1 domain i 97.3 0.0011 2.4E-08 49.5 6.7 56 94-166 2-57 (82)
5 smart00666 PB1 PB1 domain. Pho 97.3 0.0016 3.5E-08 46.7 7.3 65 95-177 4-69 (81)
6 cd05992 PB1 The PB1 domain is 97.0 0.0035 7.5E-08 44.6 7.1 66 94-177 2-69 (81)
7 cd06396 PB1_NBR1 The PB1 domai 96.7 0.0064 1.4E-07 45.8 6.4 53 95-165 3-55 (81)
8 cd06401 PB1_TFG The PB1 domain 96.4 0.022 4.8E-07 43.0 7.7 58 95-167 3-61 (81)
9 cd06409 PB1_MUG70 The MUG70 pr 96.2 0.0093 2E-07 45.3 4.8 53 102-167 7-61 (86)
10 cd06404 PB1_aPKC PB1 domain is 95.9 0.028 6.1E-07 42.6 5.9 56 95-167 3-58 (83)
11 cd06403 PB1_Par6 The PB1 domai 95.8 0.029 6.2E-07 42.3 5.6 67 95-177 3-70 (80)
12 cd06402 PB1_p62 The PB1 domain 95.4 0.073 1.6E-06 40.5 6.7 59 94-167 2-65 (87)
13 cd06397 PB1_UP1 Uncharacterize 95.1 0.08 1.7E-06 40.1 6.1 64 95-176 3-67 (82)
14 cd06408 PB1_NoxR The PB1 domai 92.1 0.55 1.2E-05 35.8 6.0 65 93-177 3-68 (86)
15 cd06399 PB1_P40 The PB1 domain 77.6 3.7 7.9E-05 31.8 3.8 39 108-164 22-60 (92)
16 cd06395 PB1_Map2k5 PB1 domain 61.4 15 0.00033 28.2 4.1 50 100-166 9-58 (91)
17 PF10411 DsbC_N: Disulfide bon 57.5 8.3 0.00018 26.5 1.9 17 151-167 34-50 (57)
18 cd06406 PB1_P67 A PB1 domain i 57.0 54 0.0012 24.7 6.3 69 94-181 4-75 (80)
19 PF12426 DUF3674: RNA dependen 43.6 14 0.0003 24.7 1.2 16 119-134 6-22 (41)
20 COG0219 CspR Predicted rRNA me 36.3 19 0.00042 30.3 1.2 69 100-183 48-125 (155)
21 PF06463 Mob_synth_C: Molybden 34.0 1.2E+02 0.0025 24.0 5.4 67 108-184 17-83 (128)
22 PF00788 RA: Ras association ( 33.1 1.7E+02 0.0037 20.4 5.7 69 93-175 3-77 (93)
23 TIGR02577 cas_TM1794_Crm2 CRIS 30.1 33 0.00072 33.1 1.9 76 91-180 341-434 (482)
24 PRK13361 molybdenum cofactor b 29.3 1.5E+02 0.0034 26.5 6.0 77 98-184 188-266 (329)
25 PF09840 DUF2067: Uncharacteri 29.0 21 0.00047 30.5 0.4 34 143-180 93-126 (190)
26 PF02013 CBM_10: Cellulose or 27.3 19 0.00042 23.2 -0.1 12 151-162 16-27 (36)
27 PF09676 TraV: Type IV conjuga 25.8 46 0.001 25.5 1.7 19 149-167 92-110 (119)
28 cd00771 ThrRS_core Threonyl-tR 23.6 17 0.00036 32.4 -1.3 70 76-160 192-262 (298)
29 PF14688 DUF4461: Domain of un 22.7 59 0.0013 29.8 2.0 24 154-177 91-117 (313)
30 KOG1637 Threonyl-tRNA syntheta 22.2 39 0.00086 33.4 0.9 55 91-160 369-423 (560)
31 KOG3938 RGS-GAIP interacting p 20.2 1.5E+02 0.0033 27.6 4.1 75 99-191 61-142 (334)
No 1
>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression []. The plant hormone auxin (indole-3-acetic acid, IAA) regulates diverse cellular and developmental responses in plants, including cell division, expansion, differentiation and patterning of embryo responses []. Auxin can regulate the gene expression of several families, including GH3 and SAUR, as well as Aux/IAA itself. The Aux/IAA proteins act as repressors of auxin-induced gene expression, possibly through modulating the activity of DNA-binding auxin response factors (ARFs) (IPR010525 from INTERPRO). Aux/IAA and ARF are thought to interact through C-terminal protein-protein interaction domains found in both Aux/IAA and ARF. Recent evidence suggests that Aux/IAA proteins can also mediate light responses []. Some members of the AUX/IAA family are longer and contain an N-terminal DNA binding domain [] and may have an early function in the establishment of vascular and body patterns in embryonic and post-embryonic development in some plants.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P1N_F 2P1Q_C 2P1O_C.
Probab=100.00 E-value=3.8e-67 Score=445.69 Aligned_cols=186 Identities=52% Similarity=0.873 Sum_probs=6.0
Q ss_pred CCccccccccCCCCCCCCC-------cccccCCCCCcchhhccccCCCC-----CCC--Cccc------cccccCCCCCC
Q 044582 9 LPESDTKLTLGLPGAGGEC-------HRTKAGTKRGFLETVDLNLMSSS-----NDN--KHCE------ENDAMASTTTP 68 (202)
Q Consensus 9 l~~~~TELrLGLPG~~~~~-------~~~~~~~KR~f~e~~~~~~~~~~-----~~~--~~~~------~~~~~~~~~~p 68 (202)
|||++|||||||||+.+++ .....++||+|+++++....... ... .... .........+|
T Consensus 1 ln~~~TELrLGLPG~~~~~~~~~~~~~~~~~~~kR~F~~aid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 80 (215)
T PF02309_consen 1 LNLKATELRLGLPGSESPDASSSSSSKKSSSGNKRGFSEAIDSSSSNSQSSSSSSSDSSSSSSSSSTSSSSSDSSSSSPP 80 (215)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCchhhhhcccCCCCCCCCcccccccccccCcccccchhhhhhcccccccccccccccCcccccccccccccccccCCCC
Confidence 7999999999999997653 22567899999999887641000 000 0000 00011222346
Q ss_pred CCcCccccCCCCchhhhhhhcC-----CcceeEEEEcCcccceeecCCCcCCHHHHHHHHHHhhcccccccc----cchh
Q 044582 69 ATKAQVVGWPPVRAYRKSAMKG-----SCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNH----VNER 139 (202)
Q Consensus 69 ~~k~qvVGWPPVrs~Rkn~~~~-----~~~~VKV~mdG~pigRkVDL~~~~sY~eL~~~L~~MF~~~~i~~~----~~e~ 139 (202)
++++|+||||||++||+|.+.. .++||||+|||+||||||||++|+||++|+.+|++||.+|+|+.+ +++.
T Consensus 81 ~~~~~~vgwpp~~s~r~n~~~~~~~~~~~~~vKV~mdG~~igRkVDL~~~~sY~~L~~~L~~MF~~~~i~~~~~~~~~~~ 160 (215)
T PF02309_consen 81 ASKAQVVGWPPVRSFRKNSLSEKQSSSSRSYVKVNMDGVPIGRKVDLSAYSSYEELSSALEKMFSCFSIEQCGSHGLNES 160 (215)
T ss_dssp -----BTTBS----S-----------------------------------------------------------------
T ss_pred cccccccCCCcccccccccccccccccCCceeEEEecCcccceecCHHHhhCHHHHHHHHHHhcCCCCccccccccccch
Confidence 6889999999999999998763 579999999999999999999999999999999999988888733 2455
Q ss_pred hhhcccCCCceeeEEecCCCCeEEccCcChhHHHhcceeeEEeccccccCCCCCC
Q 044582 140 KIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSEAIGLAPRT 194 (202)
Q Consensus 140 ~l~d~~~~~~~~ltYeD~dGDwmLVGDvPW~~Fv~svkRLrIm~~sea~~l~~~~ 194 (202)
++.++.++++|+|||||+||||||||||||+|||++|||||||+.+|+++|+||+
T Consensus 161 ~~~~~~~~~~~~l~Y~D~egd~mlvGD~PW~~F~~~vkRl~I~~~~e~~~~~~r~ 215 (215)
T PF02309_consen 161 GLLDLLNGSEYVLVYEDKEGDWMLVGDVPWEEFVKSVKRLRIMKSSEAKGLAPRA 215 (215)
T ss_dssp -------------------------------------------------------
T ss_pred hhccccCCcceeEEEECCCCCEEEecCCCHHHHHHHhhccEEecHHHhcccCCCC
Confidence 5667778899999999999999999999999999999999999999999999985
No 2
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=97.59 E-value=0.00018 Score=51.65 Aligned_cols=67 Identities=25% Similarity=0.381 Sum_probs=54.3
Q ss_pred eeEEEEcCcccceeecCCCcCCHHHHHHHHHHhhcccccccccchhhhhcccCCCceeeEEecCCCCeEEccC-cChhHH
Q 044582 94 FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGD-VPWKMF 172 (202)
Q Consensus 94 ~VKV~mdG~pigRkVDL~~~~sY~eL~~~L~~MF~~~~i~~~~~e~~l~d~~~~~~~~ltYeD~dGDwmLVGD-vPW~~F 172 (202)
-|||...|.. =|.+.+..--+|.+|...++..|+. . ...+.+.|.|.||||..+-+ .=|++.
T Consensus 3 ~vK~~~~~~~-~~~~~~~~~~s~~~L~~~i~~~~~~---~-------------~~~~~l~Y~D~dgD~V~i~sd~Dl~~a 65 (84)
T PF00564_consen 3 RVKVRYGGDI-RRIISLPSDVSFDDLRSKIREKFGL---L-------------DEDFQLKYKDEDGDLVTISSDEDLQEA 65 (84)
T ss_dssp EEEEEETTEE-EEEEEECSTSHHHHHHHHHHHHHTT---S-------------TSSEEEEEEETTSSEEEESSHHHHHHH
T ss_pred EEEEEECCee-EEEEEcCCCCCHHHHHHHHHHHhCC---C-------------CccEEEEeeCCCCCEEEeCCHHHHHHH
Confidence 4899999983 3358888888999999999999993 1 34689999999999998875 558887
Q ss_pred Hhcce
Q 044582 173 VESCK 177 (202)
Q Consensus 173 v~svk 177 (202)
++.++
T Consensus 66 ~~~~~ 70 (84)
T PF00564_consen 66 IEQAK 70 (84)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77775
No 3
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=97.33 E-value=0.00065 Score=51.75 Aligned_cols=68 Identities=22% Similarity=0.301 Sum_probs=52.9
Q ss_pred eeEEEEcCcccceeecCC---CcCCHHHHHHHHHHhhcccccccccchhhhhcccCCCceeeEEecCCCCeEEccCcChh
Q 044582 94 FVKVAVEGAPYLRKVDLE---IYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWK 170 (202)
Q Consensus 94 ~VKV~mdG~pigRkVDL~---~~~sY~eL~~~L~~MF~~~~i~~~~~e~~l~d~~~~~~~~ltYeD~dGDwmLVGDvPW~ 170 (202)
-|||.-+|.-+=-++++. .--+|++|...+++.|. +. ...+|++.|.|.||||..+-.. +
T Consensus 2 ~vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~---l~------------~~~~~~l~Y~Dedgd~V~l~~D--~ 64 (91)
T cd06398 2 VVKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFS---LS------------PDADLSLTYTDEDGDVVTLVDD--N 64 (91)
T ss_pred EEEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhC---CC------------CCCcEEEEEECCCCCEEEEccH--H
Confidence 489999998544455553 45799999999999998 32 2367999999999999998776 6
Q ss_pred HHHhccee
Q 044582 171 MFVESCKR 178 (202)
Q Consensus 171 ~Fv~svkR 178 (202)
.|..++.+
T Consensus 65 DL~~a~~~ 72 (91)
T cd06398 65 DLTDAIQY 72 (91)
T ss_pred HHHHHHHH
Confidence 66666554
No 4
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=97.27 E-value=0.0011 Score=49.46 Aligned_cols=56 Identities=20% Similarity=0.310 Sum_probs=44.6
Q ss_pred eeEEEEcCcccceeecCCCcCCHHHHHHHHHHhhcccccccccchhhhhcccCCCceeeEEecCCCCeEEccC
Q 044582 94 FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGD 166 (202)
Q Consensus 94 ~VKV~mdG~pigRkVDL~~~~sY~eL~~~L~~MF~~~~i~~~~~e~~l~d~~~~~~~~ltYeD~dGDwmLVGD 166 (202)
-|||...|. .+.+-|..--+|++|.+.+.++|. +. +...|.|-|.|.||||.++--
T Consensus 2 ~vK~~~~~d--~~r~~l~~~~~~~~L~~~i~~r~~---~~------------~~~~f~LkY~Ddegd~v~lts 57 (82)
T cd06407 2 RVKATYGEE--KIRFRLPPSWGFTELKQEIAKRFK---LD------------DMSAFDLKYLDDDEEWVLLTC 57 (82)
T ss_pred EEEEEeCCe--EEEEEcCCCCCHHHHHHHHHHHhC---CC------------CCCeeEEEEECCCCCeEEeec
Confidence 389999888 455556666699999999999999 22 235799999999999998754
No 5
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=97.26 E-value=0.0016 Score=46.67 Aligned_cols=65 Identities=22% Similarity=0.392 Sum_probs=51.3
Q ss_pred eEEEEcCcccceeecCCCcCCHHHHHHHHHHhhcccccccccchhhhhcccCCCceeeEEecCCCCeEEccC-cChhHHH
Q 044582 95 VKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGD-VPWKMFV 173 (202)
Q Consensus 95 VKV~mdG~pigRkVDL~~~~sY~eL~~~L~~MF~~~~i~~~~~e~~l~d~~~~~~~~ltYeD~dGDwmLVGD-vPW~~Fv 173 (202)
|||.-.|. -|.+-+..--+|.+|...+.+.|+. ....+.|.|+|.||||..+.+ .=|++.+
T Consensus 4 vK~~~~~~--~~~~~~~~~~s~~dL~~~i~~~~~~----------------~~~~~~l~Y~Dedgd~v~l~sd~Dl~~a~ 65 (81)
T smart00666 4 VKLRYGGE--TRRLSVPRDISFEDLRSKVAKRFGL----------------DNQSFTLKYQDEDGDLVSLTSDEDLEEAI 65 (81)
T ss_pred EEEEECCE--EEEEEECCCCCHHHHHHHHHHHhCC----------------CCCCeEEEEECCCCCEEEecCHHHHHHHH
Confidence 68877554 6777788889999999999999992 124578999999999987765 5677777
Q ss_pred hcce
Q 044582 174 ESCK 177 (202)
Q Consensus 174 ~svk 177 (202)
+.++
T Consensus 66 ~~~~ 69 (81)
T smart00666 66 EEYD 69 (81)
T ss_pred HHHH
Confidence 7655
No 6
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=97.03 E-value=0.0035 Score=44.63 Aligned_cols=66 Identities=24% Similarity=0.416 Sum_probs=51.2
Q ss_pred eeEEEEcCcccceeecCC-CcCCHHHHHHHHHHhhcccccccccchhhhhcccCCCceeeEEecCCCCeEEccC-cChhH
Q 044582 94 FVKVAVEGAPYLRKVDLE-IYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGD-VPWKM 171 (202)
Q Consensus 94 ~VKV~mdG~pigRkVDL~-~~~sY~eL~~~L~~MF~~~~i~~~~~e~~l~d~~~~~~~~ltYeD~dGDwmLVGD-vPW~~ 171 (202)
-|||.-.|. -|.+=+. .--+|.+|...|.+.|+. . ...+.+.|.|.||||..+.+ .=|++
T Consensus 2 ~vK~~~~~~--~~~~~~~~~~~s~~~L~~~i~~~~~~---~-------------~~~~~l~y~D~e~d~v~l~sd~Dl~~ 63 (81)
T cd05992 2 RVKVKYGGE--IRRFVVVSRSISFEDLRSKIAEKFGL---D-------------AVSFKLKYPDEDGDLVTISSDEDLEE 63 (81)
T ss_pred cEEEEecCC--CEEEEEecCCCCHHHHHHHHHHHhCC---C-------------CCcEEEEeeCCCCCEEEeCCHHHHHH
Confidence 378888876 3455555 888999999999999992 1 13578999999999999888 56777
Q ss_pred HHhcce
Q 044582 172 FVESCK 177 (202)
Q Consensus 172 Fv~svk 177 (202)
.++.++
T Consensus 64 a~~~~~ 69 (81)
T cd05992 64 AIEEAR 69 (81)
T ss_pred HHHHHh
Confidence 776655
No 7
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=96.70 E-value=0.0064 Score=45.77 Aligned_cols=53 Identities=15% Similarity=0.193 Sum_probs=45.6
Q ss_pred eEEEEcCcccceeecCCCcCCHHHHHHHHHHhhcccccccccchhhhhcccCCCceeeEEecCCCCeEEcc
Q 044582 95 VKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVG 165 (202)
Q Consensus 95 VKV~mdG~pigRkVDL~~~~sY~eL~~~L~~MF~~~~i~~~~~e~~l~d~~~~~~~~ltYeD~dGDwmLVG 165 (202)
|||.-.|.-+--+++-+..-+|.+|.+.+.++|+. . .+.|.|-|.||||.++-
T Consensus 3 vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l---~---------------~f~lKYlDde~e~v~ls 55 (81)
T cd06396 3 LKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGL---N---------------DIQIKYVDEENEEVSVN 55 (81)
T ss_pred EEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCC---C---------------cceeEEEcCCCCEEEEE
Confidence 79999999777788887788999999999999992 1 46799999999998874
No 8
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.
Probab=96.41 E-value=0.022 Score=43.01 Aligned_cols=58 Identities=22% Similarity=0.382 Sum_probs=43.6
Q ss_pred eEEEEcCcccceeecCCCc-CCHHHHHHHHHHhhcccccccccchhhhhcccCCCceeeEEecCCCCeEEccCc
Q 044582 95 VKVAVEGAPYLRKVDLEIY-HSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDV 167 (202)
Q Consensus 95 VKV~mdG~pigRkVDL~~~-~sY~eL~~~L~~MF~~~~i~~~~~e~~l~d~~~~~~~~ltYeD~dGDwmLVGDv 167 (202)
+|+.-.|. -|.+=+..- -+|.+|...+.+.|.. . ......+.+.|.|.|||+.-+.+-
T Consensus 3 iK~~~g~D--iR~~~~~~~~~t~~~L~~~v~~~F~~-~------------~~~~~~flIKYkD~dGDlVTIts~ 61 (81)
T cd06401 3 LKAQLGDD--IRRIPIHNEDITYDELLLMMQRVFRG-K------------LGSSDDVLIKYKDEDGDLITIFDS 61 (81)
T ss_pred EEEEeCCe--EEEEeccCccccHHHHHHHHHHHhcc-c------------cCCcccEEEEEECCCCCEEEeccH
Confidence 67777666 466554443 3999999999999992 1 112357899999999999999885
No 9
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=96.22 E-value=0.0093 Score=45.30 Aligned_cols=53 Identities=21% Similarity=0.270 Sum_probs=39.5
Q ss_pred cccceeecCC--CcCCHHHHHHHHHHhhcccccccccchhhhhcccCCCceeeEEecCCCCeEEccCc
Q 044582 102 APYLRKVDLE--IYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDV 167 (202)
Q Consensus 102 ~pigRkVDL~--~~~sY~eL~~~L~~MF~~~~i~~~~~e~~l~d~~~~~~~~ltYeD~dGDwmLVGDv 167 (202)
+|-||.+=++ ...|+.+|.+++.+=|+ +... ....|.|.|.|.||||.+.--.
T Consensus 7 ~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~---~d~~----------~~~~~~L~YlDDEgD~VllT~D 61 (86)
T cd06409 7 DPKGRVHRFRLRPSESLEELRTLISQRLG---DDDF----------ETHLYALSYVDDEGDIVLITSD 61 (86)
T ss_pred CCCCCEEEEEecCCCCHHHHHHHHHHHhC---Cccc----------cCCcccEEEEcCCCCEEEEecc
Confidence 4567765554 37899999999999998 3311 1356899999999999987543
No 10
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=95.85 E-value=0.028 Score=42.61 Aligned_cols=56 Identities=27% Similarity=0.392 Sum_probs=45.8
Q ss_pred eEEEEcCcccceeecCCCcCCHHHHHHHHHHhhcccccccccchhhhhcccCCCceeeEEecCCCCeEEccCc
Q 044582 95 VKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDV 167 (202)
Q Consensus 95 VKV~mdG~pigRkVDL~~~~sY~eL~~~L~~MF~~~~i~~~~~e~~l~d~~~~~~~~ltYeD~dGDwmLVGDv 167 (202)
||+.-.|...--.+|. .-+|++|.+.+.+||.. . .+..|++.|.|.|||---+...
T Consensus 3 ~K~~y~gdi~it~~d~--~~s~e~L~~~v~~~c~~-~--------------~~q~ft~kw~DEEGDp~tiSS~ 58 (83)
T cd06404 3 VKAAYNGDIMITSIDP--SISLEELCNEVRDMCRF-H--------------NDQPFTLKWIDEEGDPCTISSQ 58 (83)
T ss_pred EEEEecCcEEEEEcCC--CcCHHHHHHHHHHHhCC-C--------------CCCcEEEEEECCCCCceeecCH
Confidence 7999999976666776 67899999999999992 1 2456999999999998877654
No 11
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=95.77 E-value=0.029 Score=42.33 Aligned_cols=67 Identities=19% Similarity=0.305 Sum_probs=48.7
Q ss_pred eEEEEcCcccceeecCCCcCCHHHHHHHHHHhhcccccccccchhhhhcccCCCceeeEEecCCCCeEEcc-CcChhHHH
Q 044582 95 VKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVG-DVPWKMFV 173 (202)
Q Consensus 95 VKV~mdG~pigRkVDL~~~~sY~eL~~~L~~MF~~~~i~~~~~e~~l~d~~~~~~~~ltYeD~dGDwmLVG-DvPW~~Fv 173 (202)
||..-|..--=-.+|.....+|++++.-|+.||. |. +..|+|-|.|.+||.+-+- |+-+..=+
T Consensus 3 VKSkfdaEfRRFsl~r~~~~~f~ef~~ll~~lH~---l~-------------~~~f~i~Y~D~~gDLLPInNDdNf~kAl 66 (80)
T cd06403 3 VKSKFDAEFRRFSLDRNKPGKFEDFYKLLEHLHH---IP-------------NVDFLIGYTDPHGDLLPINNDDNFLKAL 66 (80)
T ss_pred eecccCCeEEEEEeccccCcCHHHHHHHHHHHhC---CC-------------CCcEEEEEeCCCCCEecccCcHHHHHHH
Confidence 5666666632224555566999999999999999 33 2468999999999999775 44555555
Q ss_pred hcce
Q 044582 174 ESCK 177 (202)
Q Consensus 174 ~svk 177 (202)
++++
T Consensus 67 ssa~ 70 (80)
T cd06403 67 SSAN 70 (80)
T ss_pred HcCC
Confidence 6666
No 12
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=95.38 E-value=0.073 Score=40.52 Aligned_cols=59 Identities=22% Similarity=0.421 Sum_probs=44.6
Q ss_pred eeEEEEcC---cccceee--cCCCcCCHHHHHHHHHHhhcccccccccchhhhhcccCCCceeeEEecCCCCeEEccCc
Q 044582 94 FVKVAVEG---APYLRKV--DLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDV 167 (202)
Q Consensus 94 ~VKV~mdG---~pigRkV--DL~~~~sY~eL~~~L~~MF~~~~i~~~~~e~~l~d~~~~~~~~ltYeD~dGDwmLVGDv 167 (202)
.||.+..| .+=-|++ |=....+|++|...+.++|.. + .+..|.+.|.|.|||..-+...
T Consensus 2 ~vkayl~~~~~~~EIRRf~l~~~~~~s~~~L~~~V~~~f~~--l-------------~~~~ftlky~DeeGDlvtIssd 65 (87)
T cd06402 2 TVKAYLLGKDANAEIRRFAIDEDVSTSYEYLVEKVAAVFPS--L-------------RGKNFQLFWKDEEGDLVAFSSD 65 (87)
T ss_pred eEEEeecCCCCccceEEEEecCCCCcCHHHHHHHHHHHccc--c-------------CCCcEEEEEECCCCCEEeecCH
Confidence 67888877 2333444 446677999999999999982 1 2357999999999999887764
No 13
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=95.13 E-value=0.08 Score=40.11 Aligned_cols=64 Identities=20% Similarity=0.325 Sum_probs=49.4
Q ss_pred eEEEEcCcccceeecCCCcCCHHHHHHHHHHhhcccccccccchhhhhcccCCCceeeEEecCCCCeEEccC-cChhHHH
Q 044582 95 VKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGD-VPWKMFV 173 (202)
Q Consensus 95 VKV~mdG~pigRkVDL~~~~sY~eL~~~L~~MF~~~~i~~~~~e~~l~d~~~~~~~~ltYeD~dGDwmLVGD-vPW~~Fv 173 (202)
-||+-+|. .|++-...-=+|..|.+.|+.+|.. .. ..+.|||.|.|||..-+-| .=.++|.
T Consensus 3 fKv~~~g~--~RRf~~~~~pt~~~L~~kl~~Lf~l---p~-------------~~~~vtYiDeD~D~ITlssd~eL~d~~ 64 (82)
T cd06397 3 FKSSFLGD--TRRIVFPDIPTWEALASKLENLYNL---PE-------------IKVGVTYIDNDNDEITLSSNKELQDFY 64 (82)
T ss_pred EEEEeCCc--eEEEecCCCccHHHHHHHHHHHhCC---Ch-------------hHeEEEEEcCCCCEEEecchHHHHHHH
Confidence 48888887 8999888899999999999999992 21 1278999999999886655 4455555
Q ss_pred hcc
Q 044582 174 ESC 176 (202)
Q Consensus 174 ~sv 176 (202)
.-.
T Consensus 65 ~~~ 67 (82)
T cd06397 65 RLS 67 (82)
T ss_pred Hhc
Confidence 433
No 14
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=92.14 E-value=0.55 Score=35.75 Aligned_cols=65 Identities=18% Similarity=0.325 Sum_probs=50.1
Q ss_pred ceeEEEEcCcccceeecCCCcCCHHHHHHHHHHhhcccccccccchhhhhcccCCCceeeEEecCCCCeEEccCc-ChhH
Q 044582 93 KFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDV-PWKM 171 (202)
Q Consensus 93 ~~VKV~mdG~pigRkVDL~~~~sY~eL~~~L~~MF~~~~i~~~~~e~~l~d~~~~~~~~ltYeD~dGDwmLVGDv-PW~~ 171 (202)
.-|||+-.|. .|-|-+..-=+|++|...+.++|+ +. ..+.+-|.|. ||..-+++- =.++
T Consensus 3 ikVKv~~~~D--v~~i~v~~~i~f~dL~~kIrdkf~---~~--------------~~~~iKykDE-GD~iti~sq~DLd~ 62 (86)
T cd06408 3 IRVKVHAQDD--TRYIMIGPDTGFADFEDKIRDKFG---FK--------------RRLKIKMKDD-GDMITMGDQDDLDM 62 (86)
T ss_pred EEEEEEecCc--EEEEEcCCCCCHHHHHHHHHHHhC---CC--------------CceEEEEEcC-CCCccccCHHHHHH
Confidence 3589998898 667777777789999999999999 22 2578999999 999988874 3344
Q ss_pred HHhcce
Q 044582 172 FVESCK 177 (202)
Q Consensus 172 Fv~svk 177 (202)
-+.++|
T Consensus 63 Ai~~a~ 68 (86)
T cd06408 63 AIDTAR 68 (86)
T ss_pred HHHHHH
Confidence 455554
No 15
>cd06399 PB1_P40 The PB1 domain is essential part of the p40 adaptor protein which plays an important role in activating phagocyte NADPH oxidase during phagocytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes , such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domain of p40 represents a type I PB1 domain which interacts with the PB1 domain of oxidase activator p67 w
Probab=77.58 E-value=3.7 Score=31.79 Aligned_cols=39 Identities=23% Similarity=0.322 Sum_probs=31.1
Q ss_pred ecCCCcCCHHHHHHHHHHhhcccccccccchhhhhcccCCCceeeEEecCCCCeEEc
Q 044582 108 VDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLV 164 (202)
Q Consensus 108 VDL~~~~sY~eL~~~L~~MF~~~~i~~~~~e~~l~d~~~~~~~~ltYeD~dGDwmLV 164 (202)
=||+..-+|.+|+.-..+-|... +-+|.|.|.|||..-+
T Consensus 22 e~l~~~P~~kdLl~lmr~~f~~~------------------dIaLNYrD~EGDLIRl 60 (92)
T cd06399 22 EDLSSTPLLKDLLELTRREFQRE------------------DIALNYRDAEGDLIRL 60 (92)
T ss_pred cccccCccHHHHHHHHHHHhchh------------------heeeeeecCCCCEEEE
Confidence 37888899999999999999831 2368899999998543
No 16
>cd06395 PB1_Map2k5 PB1 domain is essential part of the mitogen-activated protein kinase kinase 5 (Map2k5, alias MEK5) one of the key member of the signaling kinases cascade which involved in angiogenesis and early cardiovascular development. The PB1 domain of Map2k5 interacts with the PB1 domain of another members of kinase cascade MEKK2 (or MEKK3). A canonical PB1-PB1 interaction, involving heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The Map2k5 protein contains a type I PB1 domain.
Probab=61.42 E-value=15 Score=28.16 Aligned_cols=50 Identities=22% Similarity=0.297 Sum_probs=36.7
Q ss_pred cCcccceeecCCCcCCHHHHHHHHHHhhcccccccccchhhhhcccCCCceeeEEecCCCCeEEccC
Q 044582 100 EGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGD 166 (202)
Q Consensus 100 dG~pigRkVDL~~~~sY~eL~~~L~~MF~~~~i~~~~~e~~l~d~~~~~~~~ltYeD~dGDwmLVGD 166 (202)
+|..+--.||....=++.+++.++.+....-|. -..-|||.|||.+-|--
T Consensus 9 ~gg~vDw~V~~~~~L~F~DvL~~I~~vlp~aT~-----------------tAFeYEDE~gDRITVRS 58 (91)
T cd06395 9 NGGAVDWTVQSGPQLLFRDVLDVIGQVLPEATT-----------------TAFEYEDEDGDRITVRS 58 (91)
T ss_pred CCCcccccccCcccccHHHHHHHHHHhcccccc-----------------cceeeccccCCeeEecc
Confidence 344566777877778899999998887763221 13569999999988854
No 17
>PF10411 DsbC_N: Disulfide bond isomerase protein N-terminus; InterPro: IPR018950 This is the N-terminal domain of the disulphide bond isomerase DsbC. The whole molecule is V-shaped, where each arm is a DsbC monomer of two domains linked by a hinge; and the N-termini of each monomer join to form the dimer interface at the base of the V, so are vital for dimerisation []. DsbC is required for disulphide bond formation and functions as a disulphide bond isomerase during oxidative protein-folding in bacterial periplasm. It also has chaperone activity []. ; PDB: 1EEJ_B 2IYJ_A 1TJD_A 1JZD_B 1JZO_A 1G0T_B 1T3B_A.
Probab=57.50 E-value=8.3 Score=26.50 Aligned_cols=17 Identities=29% Similarity=0.649 Sum_probs=14.4
Q ss_pred eeEEecCCCCeEEccCc
Q 044582 151 VPTYEDKDGDWMLVGDV 167 (202)
Q Consensus 151 ~ltYeD~dGDwmLVGDv 167 (202)
-+.|.|.||+.+++|+.
T Consensus 34 ~i~Y~~~dg~yli~G~l 50 (57)
T PF10411_consen 34 GILYVDEDGRYLIQGQL 50 (57)
T ss_dssp EEEEEETTSSEEEES-E
T ss_pred eEEEEcCCCCEEEEeEE
Confidence 37899999999999985
No 18
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=57.04 E-value=54 Score=24.70 Aligned_cols=69 Identities=16% Similarity=0.207 Sum_probs=50.0
Q ss_pred eeEEEEcCcccceeecCCCcCCHHHHHHHHHHhhcccccccccchhhhhcccCCCceeeEEecCCC-CeEEccCcChhHH
Q 044582 94 FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDG-DWMLVGDVPWKMF 172 (202)
Q Consensus 94 ~VKV~mdG~pigRkVDL~~~~sY~eL~~~L~~MF~~~~i~~~~~e~~l~d~~~~~~~~ltYeD~dG-DwmLVGDvPW~~F 172 (202)
-|||+-.+ .=.|-...=-+|.+|...|.+=+. +. +.+-+|.|.|.+. +...++|--++.-
T Consensus 4 vvKV~f~~---tIaIrvp~~~~y~~L~~ki~~kLk---l~-------------~e~i~LsYkde~s~~~v~l~d~dle~a 64 (80)
T cd06406 4 VVKVHFKY---TVAIQVARGLSYATLLQKISSKLE---LP-------------AEHITLSYKSEASGEDVILSDTNMEDV 64 (80)
T ss_pred EEEEEEEE---EEEEEcCCCCCHHHHHHHHHHHhC---CC-------------chhcEEEeccCCCCCccCcChHHHHHH
Confidence 58999987 335566667789999999999888 21 1234788998874 4444499989988
Q ss_pred Hhcce--eeEE
Q 044582 173 VESCK--RVRL 181 (202)
Q Consensus 173 v~svk--RLrI 181 (202)
.+.++ ||++
T Consensus 65 ws~~~~~~lTL 75 (80)
T cd06406 65 WSQAKDGCLTL 75 (80)
T ss_pred HHhhcCCeEEE
Confidence 88887 4443
No 19
>PF12426 DUF3674: RNA dependent RNA polymerase; InterPro: IPR024378 This domain is found in the RNA-directed RNA polymerase. It is located towards the N terminus and is approximately 40 amino acids in length. There is a conserved MFNLKF sequence motif. There are two completely conserved residues (E and P) that may be functionally important.
Probab=43.57 E-value=14 Score=24.72 Aligned_cols=16 Identities=44% Similarity=0.436 Sum_probs=12.0
Q ss_pred HHHHHHHhhc-cccccc
Q 044582 119 LLSALEDMFS-FLTIRN 134 (202)
Q Consensus 119 L~~~L~~MF~-~~~i~~ 134 (202)
=..+||.||. .|.|+.
T Consensus 6 ER~aLEAMFNLKFhi~~ 22 (41)
T PF12426_consen 6 ERSALEAMFNLKFHIGG 22 (41)
T ss_pred HHHHHHHHhceeeeeCC
Confidence 3689999999 366653
No 20
>COG0219 CspR Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]
Probab=36.26 E-value=19 Score=30.29 Aligned_cols=69 Identities=25% Similarity=0.412 Sum_probs=44.1
Q ss_pred cCcccceeecCCCcCCHHHHHHHH---HHhhcccccccccchhhhhcccCCCceeeEEecCCCCeEEccCc----ChhHH
Q 044582 100 EGAPYLRKVDLEIYHSYQELLSAL---EDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDV----PWKMF 172 (202)
Q Consensus 100 dG~pigRkVDL~~~~sY~eL~~~L---~~MF~~~~i~~~~~e~~l~d~~~~~~~~ltYeD~dGDwmLVGDv----PW~~F 172 (202)
-|-.|.-+++|..|++|++...+. .++|. ++.... .-|. -+....|||+|-|-. |= .+
T Consensus 48 AGlDY~~~~~l~~h~s~e~fl~~~~~~~rl~~-~tt~~~------------~~~~-~~~f~~~d~llFG~Es~GLP~-~i 112 (155)
T COG0219 48 AGLDYHEKASLTEHDSLEAFLEAEPIGGRLFA-LTTKGT------------TTYT-DVSFQKGDYLLFGPESRGLPE-EI 112 (155)
T ss_pred cccchHhhcceEEeCCHHHHHhhccCCceEEE-EEeccc------------cccc-cccCCCCCEEEECCCCCCCCH-HH
Confidence 356799999999999999999998 45776 332110 1111 144466999999975 52 33
Q ss_pred Hhc--ceeeEEec
Q 044582 173 VES--CKRVRLMK 183 (202)
Q Consensus 173 v~s--vkRLrIm~ 183 (202)
++. -++|||=-
T Consensus 113 ~~~~~~~~irIPm 125 (155)
T COG0219 113 LDAAPDRCIRIPM 125 (155)
T ss_pred HHhCccceEEecc
Confidence 332 22588743
No 21
>PF06463 Mob_synth_C: Molybdenum Cofactor Synthesis C; InterPro: IPR010505 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This entry represents MoaA, which belongs to a family of enzymes involved in the synthesis of metallo-cofactors (IPR000385 from INTERPRO). Each subunit of the MoaA dimer is comprised of an N-terminal SAM domain (IPR007197 from INTERPRO) that contains the [4Fe-4S] cluster typical for this family of enzymes, as well as an additional [4Fe-4S] cluster in the C-terminal domain that is unique to MoaA proteins []. The unique Fe site of the C-terminal [4Fe-4S] cluster is thought to be involved in the binding and activation of 5'-GTP. Mutations in the human MoCF biosynthesis proteins MOCS1, MOCS2 or GEPH cause MoCF Deficiency type A (MOCOD), causing the loss of activity of MoCF-containing enzymes, resulting in neurological abnormalities and death [].; GO: 0051539 4 iron, 4 sulfur cluster binding, 0006777 Mo-molybdopterin cofactor biosynthetic process, 0019008 molybdopterin synthase complex; PDB: 2FB2_A 2FB3_A 1TV8_B 1TV7_A.
Probab=33.99 E-value=1.2e+02 Score=24.02 Aligned_cols=67 Identities=25% Similarity=0.335 Sum_probs=29.9
Q ss_pred ecCCCcCCHHHHHHHHHHhhcccccccccchhhhhcccCCCceeeEEecCCCCeEEccCcChhHHHhcceeeEEecc
Q 044582 108 VDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKS 184 (202)
Q Consensus 108 VDL~~~~sY~eL~~~L~~MF~~~~i~~~~~e~~l~d~~~~~~~~ltYeD~dGDwmLVGDvPW~~Fv~svkRLrIm~~ 184 (202)
+--..|-+++++++.|++-|....... + ...+..-|.+ .+..|..=++.-+- +.||.+|.||||...
T Consensus 17 ~~~~~~~~~~ei~~~l~~~~~~~~~~~---~----~~~pa~~y~~--~g~~g~vG~I~~~s-~~FC~~CNRiRlTsd 83 (128)
T PF06463_consen 17 WFEEEFVPAQEILERLEERYELLPSEK---R----PNGPARYYRI--PGGKGRVGFISPVS-NPFCSSCNRIRLTSD 83 (128)
T ss_dssp B-TTTB--HHHHHHHHHHHS-EEEE-----S----ST-SSEEEEE--TTT--EEEEE-TTT-S--GGG--EEEE-TT
T ss_pred chhhcCcCHHHHHHHHHHhCCcccccc---c----cCCcceEEEE--CCCCcEEEEEeCCC-CCCCCcCCEEEEccC
Confidence 344778899999999999998422111 0 1111122332 33334433333332 249999999999654
No 22
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=33.07 E-value=1.7e+02 Score=20.44 Aligned_cols=69 Identities=12% Similarity=0.196 Sum_probs=50.2
Q ss_pred ceeEEEEcCccc---ceeecCCCcCCHHHHHHHHHHhhcccccccccchhhhhcccCCCceee--EEecCCCCeEEccC-
Q 044582 93 KFVKVAVEGAPY---LRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVP--TYEDKDGDWMLVGD- 166 (202)
Q Consensus 93 ~~VKV~mdG~pi---gRkVDL~~~~sY~eL~~~L~~MF~~~~i~~~~~e~~l~d~~~~~~~~l--tYeD~dGDwmLVGD- 166 (202)
.++||++....- -+.|=++....-.+++.++-+-|+ +.. +..+|.| .-........|-.|
T Consensus 3 ~~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~---l~~-----------~~~~y~L~~~~~~~~~er~L~~~E 68 (93)
T PF00788_consen 3 GVLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFG---LAE-----------DPSDYCLVEVEESGGEERPLDDDE 68 (93)
T ss_dssp EEEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTT---TSS-----------SGGGEEEEEEECTTTEEEEETTTS
T ss_pred eEEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhC---CCC-----------CCCCEEEEEEEcCCCEEEEcCCCC
Confidence 578999987753 678889999999999999999999 311 2357999 44455556666544
Q ss_pred cChhHHHhc
Q 044582 167 VPWKMFVES 175 (202)
Q Consensus 167 vPW~~Fv~s 175 (202)
.|+..+..-
T Consensus 69 ~pl~i~~~~ 77 (93)
T PF00788_consen 69 CPLQIQLQW 77 (93)
T ss_dssp BHHHHHHTT
T ss_pred chHHHHHhC
Confidence 588777653
No 23
>TIGR02577 cas_TM1794_Crm2 CRISPR-associated protein, Crm2 family. This model represent a Crm2 family of the CRISPR-associated RAMP module, a set of six genes recurring found together in prokaryotic genomes. This gene cluster is found only in species with CRISPR repeats, usually near the repeats themselves. Because most of the six (but not this family) contain RAMP domains, and because its appearance in a genome appears to depend on other CRISPR-associated Cas genes, the set is designated the CRISPR RAMP module. This protein, typified by TM1794 from Thermotoga maritima, is designated Crm2, for CRISPR RAMP Module protein 2.
Probab=30.09 E-value=33 Score=33.11 Aligned_cols=76 Identities=12% Similarity=0.071 Sum_probs=48.6
Q ss_pred CcceeEEEEcCcccceeecC------------------CCcCCHHHHHHHHHHhhcccccccccchhhhhcccCCCceee
Q 044582 91 SCKFVKVAVEGAPYLRKVDL------------------EIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVP 152 (202)
Q Consensus 91 ~~~~VKV~mdG~pigRkVDL------------------~~~~sY~eL~~~L~~MF~~~~i~~~~~e~~l~d~~~~~~~~l 152 (202)
...|.=|.|||.-+|.-+.= ....-|..|+.+|..-|.... . .+ ......+
T Consensus 341 ~~y~Ail~aDGD~mG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~aL~~f~~~~~-~------~v----~~~~g~~ 409 (482)
T TIGR02577 341 RPYYAILKADGDRMGKLLRGEIRPEEKERIHPKKVKNLTTPAAHVAFSRALAEFSLKAV-K------IV----VNEHGEL 409 (482)
T ss_pred CceEEEEEccccchHHHHhCCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHH-H------Hh----hhhCeEE
Confidence 34577799999999987752 223446778888877666211 1 01 1112578
Q ss_pred EEecCCCCeEEccCcChhHHHhcceeeE
Q 044582 153 TYEDKDGDWMLVGDVPWKMFVESCKRVR 180 (202)
Q Consensus 153 tYeD~dGDwmLVGDvPW~~Fv~svkRLr 180 (202)
+|--.| |.|+++ ||+.-+..++.|+
T Consensus 410 VYaGGD-Dvlai~--p~~~al~~a~~l~ 434 (482)
T TIGR02577 410 VYAGGD-DVLALL--PVDTALDVAKELR 434 (482)
T ss_pred EEEccC-cEEEEc--cHHHHHHHHHHHH
Confidence 897655 677775 9997777666655
No 24
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=29.29 E-value=1.5e+02 Score=26.52 Aligned_cols=77 Identities=17% Similarity=0.192 Sum_probs=43.7
Q ss_pred EEcCcccceeec--CCCcCCHHHHHHHHHHhhcccccccccchhhhhcccCCCceeeEEecCCCCeEEccCcChhHHHhc
Q 044582 98 AVEGAPYLRKVD--LEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVES 175 (202)
Q Consensus 98 ~mdG~pigRkVD--L~~~~sY~eL~~~L~~MF~~~~i~~~~~e~~l~d~~~~~~~~ltYeD~dGDwmLVGDvPW~~Fv~s 175 (202)
+.+-.|+|+--+ -..+=+.+++...|+..|....+.. . .++........|..|-+=++.-+-.. ||.+
T Consensus 188 ~ie~mP~g~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~ig~I~~~s~~-fC~~ 257 (329)
T PRK13361 188 FIEEMPLGEIDERRRARHCSSDEVRAIIETRYPLTPSNK--------R-TGGPARYYTMADSPIHIGFISPHSHN-FCHE 257 (329)
T ss_pred EEecccCCCccchhhccCcCHHHHHHHHHHhCCcccCCC--------C-CCCCCeEEEECCCCeEEEEEcCCCcc-cccc
Confidence 556678887322 3456688899999988876322210 0 01111111123444444455544444 9999
Q ss_pred ceeeEEecc
Q 044582 176 CKRVRLMKS 184 (202)
Q Consensus 176 vkRLrIm~~ 184 (202)
|.||||-..
T Consensus 258 Cnr~rlt~~ 266 (329)
T PRK13361 258 CNRVRVTAE 266 (329)
T ss_pred CCeEEEccC
Confidence 999999664
No 25
>PF09840 DUF2067: Uncharacterized protein conserved in archaea (DUF2067); InterPro: IPR019202 This family of archaeal proteins, have no known function.
Probab=28.95 E-value=21 Score=30.55 Aligned_cols=34 Identities=24% Similarity=0.460 Sum_probs=26.9
Q ss_pred cccCCCceeeEEecCCCCeEEccCcChhHHHhcceeeE
Q 044582 143 DNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVR 180 (202)
Q Consensus 143 d~~~~~~~~ltYeD~dGDwmLVGDvPW~~Fv~svkRLr 180 (202)
+.+.-.+|..-|.+. .|..|.||+.+++.+++|.
T Consensus 93 ~~L~~~G~~ae~~~~----~i~T~a~~eev~~l~~~Ls 126 (190)
T PF09840_consen 93 DALKLLGYKAEYRED----VIKTDAPLEEVVELAERLS 126 (190)
T ss_pred HHHHhCCCeeEEeCC----eEEecCCHHHHHHHHHHHH
Confidence 444556788888655 8889999999999999873
No 26
>PF02013 CBM_10: Cellulose or protein binding domain; InterPro: IPR002883 This domain is found in two distinct sets of proteins with different functions. Those found in aerobic bacteria bind cellulose (or other carbohydrates); but in anaerobic fungi they are protein binding domains, referred to as dockerin domains or docking domains. They are believed to be responsible for the assembly of a multiprotein cellulase/hemicellulase complex, similar to the cellulosome found in certain anaerobic bacteria. The recycling of photosynthetically fixed carbon in plant cell walls is a key microbial process. Enzyme systems that attack the plant cell wall contain noncatalytic carbohydrate-binding modules that mediate attachment to this composite structure and play a pivotal role in maximizing the hydrolytic process. In anaerobes, the degradation is carried out by a high molecular weight, multifunctional complex termed the cellulosome. This consists of a number of independent enzyme components, each of which contains a conserved 40-residue dockerin domain, which functions to bind the enzyme to a cohesin domain within the scaffoldin protein [, ]. In anaerobic bacteria that degrade plant cell walls, exemplified by Clostridium thermocellum, the dockerin domains of the catalytic polypeptides can bind equally well to any cohesin from the same organism. More recently, anaerobic fungi, typified by Piromyces equi, have been suggested to also synthesise a cellulosome complex, although the dockerin sequences of the bacterial and fungal enzymes are completely different []. For example, the fungal enzymes contain one, two or three copies of the dockerin sequence in tandem within the catalytic polypeptide. In contrast, all the C. thermocellum cellulosome catalytic components contain a single dockerin domain. The anaerobic bacterial dockerins are homologous to EF hands (calcium-binding motifs) and require calcium for activity whereas the fungal dockerin does not require calcium. Finally, the interaction between cohesin and dockerin appears to be species specific in bacteria, there is almost no species specificity of binding within fungal species and no identified sites that distinguish different species. The structure of dockerin from P. equi contains two helical stretches and four short beta-strands which form an antiparallel sheet structure adjacent to an additional short twisted parallel strand. The N- and C-termini are adjacent to each other. Aerobic bacteria contain related regions, however these appear to function as cellulose/carbohydrate binding domains.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2J4M_A 2J4N_A 1E8R_A 1QLD_A 1E8P_A 1E8Q_A.
Probab=27.29 E-value=19 Score=23.21 Aligned_cols=12 Identities=42% Similarity=0.869 Sum_probs=8.9
Q ss_pred eeEEecCCCCeE
Q 044582 151 VPTYEDKDGDWM 162 (202)
Q Consensus 151 ~ltYeD~dGDwm 162 (202)
.+.|.|.+|+|=
T Consensus 16 ~v~y~d~~g~WG 27 (36)
T PF02013_consen 16 EVVYTDDDGGWG 27 (36)
T ss_dssp --SEEETTEEEE
T ss_pred ceEEcCCCCCEe
Confidence 578999999983
No 27
>PF09676 TraV: Type IV conjugative transfer system lipoprotein (TraV); InterPro: IPR014118 This entry represents TraV, a component of a conjugative type IV secretion system. TraV is an outer membrane lipoprotein that is believed to interact with the secretin TraK [, , ]. This protein contains three conserved cysteines in the N-terminal half.
Probab=25.78 E-value=46 Score=25.45 Aligned_cols=19 Identities=37% Similarity=0.567 Sum_probs=16.5
Q ss_pred ceeeEEecCCCCeEEccCc
Q 044582 149 EYVPTYEDKDGDWMLVGDV 167 (202)
Q Consensus 149 ~~~ltYeD~dGDwmLVGDv 167 (202)
=|+.-|+|.+||+..-|.|
T Consensus 92 iwiaP~~D~~g~l~~~~~V 110 (119)
T PF09676_consen 92 IWIAPWEDADGDLHDPGYV 110 (119)
T ss_pred EEEeeeECCCCCEeccceE
Confidence 4889999999999888776
No 28
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=23.57 E-value=17 Score=32.44 Aligned_cols=70 Identities=24% Similarity=0.302 Sum_probs=44.1
Q ss_pred cCCCCch-hhhhhhcCCcceeEEEEcCcccceeecCCCcCCHHHHHHHHHHhhcccccccccchhhhhcccCCCceeeEE
Q 044582 76 GWPPVRA-YRKSAMKGSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTY 154 (202)
Q Consensus 76 GWPPVrs-~Rkn~~~~~~~~VKV~mdG~pigRkVDL~~~~sY~eL~~~L~~MF~~~~i~~~~~e~~l~d~~~~~~~~ltY 154 (202)
-|.|-.. +|.-+-..+-.|...-=||+-||-|||..+.++ |.+-+.+-||. .|......|-|+|
T Consensus 192 ~W~~a~~~l~e~l~~~~~~~~~~~g~~afygpkid~~~~d~-------~gr~~q~~t~q--------ld~~~~~~f~l~y 256 (298)
T cd00771 192 VWEKAEAALREALEEIGLPYEINEGEGAFYGPKIDFHVKDA-------LGREWQCSTIQ--------LDFNLPERFDLTY 256 (298)
T ss_pred HHHHHHHHHHHHHHhCCCCceECCCCcccccceEEEEEEeC-------CCCeeecceeE--------eeccChhhcCCEE
Confidence 4666543 333222224567777788999999999998754 44555543432 1222345688999
Q ss_pred ecCCCC
Q 044582 155 EDKDGD 160 (202)
Q Consensus 155 eD~dGD 160 (202)
.|.||.
T Consensus 257 ~~~~~~ 262 (298)
T cd00771 257 IGEDGE 262 (298)
T ss_pred EccCCC
Confidence 999985
No 29
>PF14688 DUF4461: Domain of unknown function (DUF4461)
Probab=22.68 E-value=59 Score=29.83 Aligned_cols=24 Identities=46% Similarity=0.767 Sum_probs=18.3
Q ss_pred EecCCCCeEE-ccCcC--hhHHHhcce
Q 044582 154 YEDKDGDWML-VGDVP--WKMFVESCK 177 (202)
Q Consensus 154 YeD~dGDwmL-VGDvP--W~~Fv~svk 177 (202)
-.|.+|+.|| +|||| |..|++.+.
T Consensus 91 Gv~~~G~v~L~~~Dv~~~W~~~l~~l~ 117 (313)
T PF14688_consen 91 GVSLDGHVMLGTGDVPHQWTSFLERLP 117 (313)
T ss_pred ccCCCCCEEecCCCcHHHHHHHHHhCC
Confidence 3578899887 68886 888887665
No 30
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=22.18 E-value=39 Score=33.44 Aligned_cols=55 Identities=29% Similarity=0.330 Sum_probs=42.0
Q ss_pred CcceeEEEEcCcccceeecCCCcCCHHHHHHHHHHhhcccccccccchhhhhcccCCCceeeEEecCCCC
Q 044582 91 SCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGD 160 (202)
Q Consensus 91 ~~~~VKV~mdG~pigRkVDL~~~~sY~eL~~~L~~MF~~~~i~~~~~e~~l~d~~~~~~~~ltYeD~dGD 160 (202)
+..+|=+.=||+=||-|||+.. ..+|.+-+.|-||.- |..--..|-|.|++.+||
T Consensus 369 g~pw~lN~GDGAFYGPKIDi~l-------~Dal~r~hQcaTIQL--------DFqLP~rFdL~y~~~~g~ 423 (560)
T KOG1637|consen 369 GEPWVLNPGDGAFYGPKIDITL-------DDALGRKHQCATIQL--------DFQLPIRFDLEYETEDGD 423 (560)
T ss_pred CCCceecCCCcccccceeeeEh-------hhhcCcccceeeeee--------cccChhhcCceeeccccc
Confidence 4567888889999999999986 478888898877652 211123577999999999
No 31
>KOG3938 consensus RGS-GAIP interacting protein GIPC, contains PDZ domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.16 E-value=1.5e+02 Score=27.60 Aligned_cols=75 Identities=28% Similarity=0.449 Sum_probs=53.9
Q ss_pred EcCcccceeecCCCcCCHHHHHHHHHHhhcccccccccchhhhhcccCCCceeeEEec--CCCCeEEccCcChhHHHh--
Q 044582 99 VEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYED--KDGDWMLVGDVPWKMFVE-- 174 (202)
Q Consensus 99 mdG~pigRkVDL~~~~sY~eL~~~L~~MF~~~~i~~~~~e~~l~d~~~~~~~~ltYeD--~dGDwmLVGDvPW~~Fv~-- 174 (202)
-+|.|.|| +.-|++-+||++.++.-|. |... |.+ -.|--+ -|=+-||-|-.-.+.|+=
T Consensus 61 AHGSptg~---Ie~fsnv~ELY~kIAe~F~---Is~~-------dIl-----fcTlNshKvDM~~llgGqigleDfiFAH 122 (334)
T KOG3938|consen 61 AHGSPTGR---IEGFSNVRELYQKIAEAFD---ISPD-------DIL-----FCTLNSHKVDMKRLLGGQIGLEDFIFAH 122 (334)
T ss_pred ccCCccce---ecccccHHHHHHHHHHHhc---CCcc-------ceE-----EEecCCCcccHHHHhcCccChhhhhhhh
Confidence 46888998 5678999999999999998 4321 100 112112 344568889888888864
Q ss_pred ---cceeeEEeccccccCCC
Q 044582 175 ---SCKRVRLMKSSEAIGLA 191 (202)
Q Consensus 175 ---svkRLrIm~~sea~~l~ 191 (202)
-.|-++|+|+.++.||.
T Consensus 123 vkGq~kEv~v~KsedalGlT 142 (334)
T KOG3938|consen 123 VKGQAKEVEVVKSEDALGLT 142 (334)
T ss_pred hcCcceeEEEEecccccceE
Confidence 56789999999998875
Done!