Query 044585
Match_columns 352
No_of_seqs 150 out of 1281
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 04:46:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044585.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044585hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.9 3E-21 6.5E-26 199.8 16.4 242 64-335 653-910 (1153)
2 PLN03210 Resistant to P. syrin 99.8 1E-18 2.3E-23 181.0 18.5 298 3-336 554-887 (1153)
3 PLN00113 leucine-rich repeat r 99.8 5.7E-19 1.2E-23 181.8 11.9 61 267-329 379-439 (968)
4 PLN00113 leucine-rich repeat r 99.8 1.5E-18 3.3E-23 178.7 11.7 88 239-332 379-466 (968)
5 KOG4194 Membrane glycoprotein 99.7 1.4E-17 3E-22 151.6 1.8 289 5-329 100-427 (873)
6 KOG0444 Cytoskeletal regulator 99.6 7.7E-18 1.7E-22 154.5 -6.7 280 6-329 54-350 (1255)
7 KOG0444 Cytoskeletal regulator 99.6 7.3E-17 1.6E-21 148.2 -3.3 288 4-335 75-379 (1255)
8 KOG4341 F-box protein containi 99.6 1.9E-17 4.2E-22 145.2 -7.4 294 8-333 139-441 (483)
9 KOG4194 Membrane glycoprotein 99.5 1.7E-15 3.8E-20 138.1 -0.4 249 7-301 173-448 (873)
10 KOG4341 F-box protein containi 99.4 7.3E-15 1.6E-19 129.2 -6.0 293 3-324 160-458 (483)
11 PRK15387 E3 ubiquitin-protein 99.3 2E-11 4.4E-16 119.5 11.9 74 241-329 383-456 (788)
12 KOG0618 Serine/threonine phosp 99.3 1.3E-13 2.9E-18 132.1 -3.8 110 4-138 216-325 (1081)
13 PRK15370 E3 ubiquitin-protein 99.3 1.1E-11 2.3E-16 121.9 8.7 246 7-329 178-426 (754)
14 KOG0472 Leucine-rich repeat pr 99.2 5.8E-14 1.3E-18 123.0 -9.6 241 6-303 67-308 (565)
15 PRK15387 E3 ubiquitin-protein 99.2 8.2E-11 1.8E-15 115.3 10.2 228 7-304 222-457 (788)
16 KOG0472 Leucine-rich repeat pr 99.2 8.8E-14 1.9E-18 121.9 -9.5 261 9-329 47-308 (565)
17 PRK15370 E3 ubiquitin-protein 99.2 3E-11 6.5E-16 118.8 6.7 223 7-303 199-426 (754)
18 KOG0618 Serine/threonine phosp 99.1 2.8E-12 6E-17 123.2 -2.1 246 6-304 240-488 (1081)
19 KOG4658 Apoptotic ATPase [Sign 99.1 3.5E-11 7.5E-16 120.2 3.7 108 5-132 543-652 (889)
20 KOG4658 Apoptotic ATPase [Sign 99.0 4.4E-11 9.6E-16 119.4 1.4 278 4-334 568-863 (889)
21 KOG0617 Ras suppressor protein 98.9 3.5E-11 7.5E-16 94.1 -4.9 159 4-199 30-188 (264)
22 KOG3207 Beta-tubulin folding c 98.9 5E-10 1.1E-14 99.6 1.4 164 5-198 119-285 (505)
23 cd00116 LRR_RI Leucine-rich re 98.8 6E-10 1.3E-14 100.4 -2.4 65 237-303 218-289 (319)
24 KOG4237 Extracellular matrix p 98.7 9.1E-10 2E-14 96.9 -1.9 252 8-301 68-355 (498)
25 KOG3207 Beta-tubulin folding c 98.7 3.5E-09 7.6E-14 94.3 1.0 209 93-327 118-335 (505)
26 KOG0617 Ras suppressor protein 98.6 1.5E-09 3.2E-14 85.1 -3.6 130 5-166 54-183 (264)
27 KOG1947 Leucine rich repeat pr 98.6 2.9E-09 6.3E-14 101.5 -2.6 248 66-335 186-444 (482)
28 KOG2120 SCF ubiquitin ligase, 98.6 8E-10 1.7E-14 93.9 -5.6 188 97-308 186-379 (419)
29 cd00116 LRR_RI Leucine-rich re 98.6 4.1E-09 9E-14 94.9 -1.6 90 238-330 191-290 (319)
30 KOG2120 SCF ubiquitin ligase, 98.6 1.1E-09 2.3E-14 93.1 -5.7 143 32-198 186-328 (419)
31 PF14580 LRR_9: Leucine-rich r 98.5 5.1E-08 1.1E-12 78.9 1.4 35 95-131 63-97 (175)
32 KOG4237 Extracellular matrix p 98.4 1.9E-08 4.1E-13 88.7 -1.8 85 236-327 270-355 (498)
33 PRK15386 type III secretion pr 98.4 1.6E-06 3.4E-11 78.9 8.4 59 266-331 154-213 (426)
34 PF14580 LRR_9: Leucine-rich r 98.3 6.3E-07 1.4E-11 72.5 3.2 38 95-133 87-124 (175)
35 KOG1947 Leucine rich repeat pr 98.2 1.3E-07 2.8E-12 90.2 -2.8 222 94-333 186-416 (482)
36 PF13855 LRR_8: Leucine rich r 97.9 1.9E-05 4.1E-10 52.2 5.0 60 68-133 1-60 (61)
37 PF13855 LRR_8: Leucine rich r 97.9 2.4E-05 5.2E-10 51.7 4.8 57 241-302 2-59 (61)
38 KOG2982 Uncharacterized conser 97.9 5.5E-06 1.2E-10 71.0 1.5 196 29-256 69-265 (418)
39 KOG3665 ZYG-1-like serine/thre 97.7 9.9E-06 2.1E-10 79.6 0.6 108 7-133 122-231 (699)
40 PRK15386 type III secretion pr 97.7 0.00016 3.5E-09 66.0 8.1 139 118-328 48-187 (426)
41 COG4886 Leucine-rich repeat (L 97.7 2.7E-05 5.9E-10 72.4 3.1 171 30-250 115-287 (394)
42 PLN03150 hypothetical protein; 97.7 7.2E-05 1.6E-09 73.5 5.8 73 59-138 433-506 (623)
43 KOG3665 ZYG-1-like serine/thre 97.6 5.4E-06 1.2E-10 81.4 -2.5 62 68-132 122-183 (699)
44 KOG1909 Ran GTPase-activating 97.6 2.5E-06 5.5E-11 74.4 -5.1 66 237-304 238-310 (382)
45 PF12799 LRR_4: Leucine Rich r 97.5 6.8E-05 1.5E-09 45.7 2.4 37 7-44 1-37 (44)
46 KOG1259 Nischarin, modulator o 97.5 3E-05 6.4E-10 66.7 1.1 85 237-329 326-410 (490)
47 KOG1909 Ran GTPase-activating 97.5 9.8E-06 2.1E-10 70.8 -2.8 40 239-279 269-309 (382)
48 KOG1259 Nischarin, modulator o 97.2 5.5E-05 1.2E-09 65.1 -1.0 128 6-167 283-410 (490)
49 COG4886 Leucine-rich repeat (L 97.0 0.00035 7.6E-09 65.0 2.0 174 6-221 115-290 (394)
50 PF12799 LRR_4: Leucine Rich r 97.0 0.0011 2.3E-08 40.4 3.4 39 268-308 1-39 (44)
51 KOG2982 Uncharacterized conser 97.0 0.00025 5.4E-09 61.1 0.8 66 239-308 198-265 (418)
52 KOG0532 Leucine-rich repeat (L 96.9 3.3E-05 7.2E-10 71.8 -5.1 102 7-132 98-199 (722)
53 PLN03150 hypothetical protein; 96.8 0.0017 3.7E-08 63.9 5.3 109 69-196 419-528 (623)
54 KOG1644 U2-associated snRNP A' 96.8 0.0024 5.2E-08 52.1 5.1 63 66-133 62-124 (233)
55 KOG1859 Leucine-rich repeat pr 96.2 0.00012 2.7E-09 70.1 -6.5 15 179-193 183-197 (1096)
56 KOG0532 Leucine-rich repeat (L 96.0 0.0018 4E-08 60.6 0.3 125 184-328 144-270 (722)
57 KOG2123 Uncharacterized conser 96.0 0.00027 5.9E-09 60.3 -4.7 104 6-129 18-124 (388)
58 KOG3864 Uncharacterized conser 95.7 0.0011 2.4E-08 53.9 -2.3 37 155-193 150-186 (221)
59 KOG2739 Leucine-rich acidic nu 95.6 0.0073 1.6E-07 51.2 2.0 39 94-133 89-127 (260)
60 KOG2123 Uncharacterized conser 95.0 0.00074 1.6E-08 57.7 -5.6 80 67-165 18-97 (388)
61 KOG0531 Protein phosphatase 1, 94.7 0.012 2.6E-07 55.1 0.9 60 64-133 114-173 (414)
62 KOG0531 Protein phosphatase 1, 94.6 0.011 2.4E-07 55.3 0.6 104 5-132 93-196 (414)
63 KOG2739 Leucine-rich acidic nu 94.6 0.015 3.3E-07 49.4 1.2 38 95-132 64-101 (260)
64 KOG1859 Leucine-rich repeat pr 94.2 0.0016 3.5E-08 62.7 -5.9 33 6-40 186-218 (1096)
65 PF00560 LRR_1: Leucine Rich R 94.1 0.038 8.2E-07 27.9 1.7 21 8-29 1-21 (22)
66 KOG3864 Uncharacterized conser 93.3 0.019 4.1E-07 47.0 -0.5 88 241-333 102-191 (221)
67 PF13306 LRR_5: Leucine rich r 92.2 0.44 9.5E-06 36.2 5.9 32 240-276 58-89 (129)
68 PF13504 LRR_7: Leucine rich r 92.1 0.081 1.8E-06 24.8 1.0 16 7-23 1-16 (17)
69 KOG1644 U2-associated snRNP A' 91.1 0.41 8.9E-06 39.4 4.6 87 236-328 60-150 (233)
70 KOG4579 Leucine-rich repeat (L 90.4 0.046 1E-06 42.0 -1.3 83 28-132 50-133 (177)
71 smart00367 LRR_CC Leucine-rich 89.4 0.14 3.1E-06 26.9 0.5 17 292-308 2-18 (26)
72 KOG4579 Leucine-rich repeat (L 85.8 0.11 2.5E-06 40.0 -1.7 57 238-300 75-131 (177)
73 PF13306 LRR_5: Leucine rich r 84.8 4.1 8.8E-05 30.7 6.5 106 202-327 5-112 (129)
74 COG5238 RNA1 Ran GTPase-activa 83.0 1.2 2.7E-05 38.5 3.1 148 28-193 89-252 (388)
75 smart00369 LRR_TYP Leucine-ric 81.3 0.92 2E-05 23.6 1.1 21 6-27 1-21 (26)
76 smart00370 LRR Leucine-rich re 81.3 0.92 2E-05 23.6 1.1 21 6-27 1-21 (26)
77 COG5238 RNA1 Ran GTPase-activa 72.3 2.4 5.3E-05 36.8 1.8 173 6-194 29-225 (388)
78 smart00364 LRR_BAC Leucine-ric 51.8 8.8 0.00019 20.2 1.0 18 7-25 2-19 (26)
79 PF13516 LRR_6: Leucine Rich r 51.7 10 0.00023 19.0 1.3 11 7-17 2-12 (24)
80 smart00365 LRR_SD22 Leucine-ri 34.6 36 0.00078 17.9 1.7 11 7-17 2-12 (26)
81 KOG3763 mRNA export factor TAP 29.0 14 0.00031 35.3 -0.7 39 66-106 216-254 (585)
82 KOG3763 mRNA export factor TAP 21.5 35 0.00077 32.8 0.4 39 93-132 215-254 (585)
83 smart00368 LRR_RI Leucine rich 21.1 65 0.0014 16.9 1.2 10 8-17 3-12 (28)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=3e-21 Score=199.80 Aligned_cols=242 Identities=18% Similarity=0.271 Sum_probs=145.8
Q ss_pred eeccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeec-
Q 044585 64 MIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLE- 142 (352)
Q Consensus 64 ~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~- 142 (352)
+..+++|+.|++++|..+..++... +.+++|++|++++|.++...+. .. .+++|+.|.+++|..++.++...
T Consensus 653 ls~l~~Le~L~L~~c~~L~~lp~si----~~L~~L~~L~L~~c~~L~~Lp~-~i--~l~sL~~L~Lsgc~~L~~~p~~~~ 725 (1153)
T PLN03210 653 LSMATNLETLKLSDCSSLVELPSSI----QYLNKLEDLDMSRCENLEILPT-GI--NLKSLYRLNLSGCSRLKSFPDIST 725 (1153)
T ss_pred cccCCcccEEEecCCCCccccchhh----hccCCCCEEeCCCCCCcCccCC-cC--CCCCCCEEeCCCCCCccccccccC
Confidence 3455666666666666555544443 4566666666666655555432 21 45666666666665554432110
Q ss_pred ---cccccccccC-----CCCcccCeeccccccccccccccC-----CceeeccCcceEeeccCCCCcccccchhhhccC
Q 044585 143 ---ELNAKEEHIG-----PRFPRLNRLRLIDLPKLKRFCNFT-----GNIIELSELENLTIENCPDMETFISNSVVHVTT 209 (352)
Q Consensus 143 ---~~~~~~~~~~-----~~~~~L~~L~l~~~~~l~~~~~~~-----~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~ 209 (352)
.+......+. ..+++|+.|.+.++.... ++... .....+++|+.|.+++|+.+..+ |.++. +++
T Consensus 726 nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~l-P~si~-~L~ 802 (1153)
T PLN03210 726 NISWLDLDETAIEEFPSNLRLENLDELILCEMKSEK-LWERVQPLTPLMTMLSPSLTRLFLSDIPSLVEL-PSSIQ-NLH 802 (1153)
T ss_pred CcCeeecCCCccccccccccccccccccccccchhh-ccccccccchhhhhccccchheeCCCCCCcccc-Chhhh-CCC
Confidence 0000000000 013344444443322110 00000 01123467888888887766665 65543 778
Q ss_pred CCCCCC--CCCccchhhhhcccCCCCCcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCC
Q 044585 210 NNKEPQ--KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPA 287 (352)
Q Consensus 210 ~L~~L~--~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~ 287 (352)
+|+.|+ .|+.++.++.. ..+++|+.|++++|..++.++ ...++|+.|+++++ .++.+|..
T Consensus 803 ~L~~L~Ls~C~~L~~LP~~----------~~L~sL~~L~Ls~c~~L~~~p-------~~~~nL~~L~Ls~n-~i~~iP~s 864 (1153)
T PLN03210 803 KLEHLEIENCINLETLPTG----------INLESLESLDLSGCSRLRTFP-------DISTNISDLNLSRT-GIEEVPWW 864 (1153)
T ss_pred CCCEEECCCCCCcCeeCCC----------CCccccCEEECCCCCcccccc-------ccccccCEeECCCC-CCccChHH
Confidence 888887 67777655433 246788888888887777665 23467888888775 67778877
Q ss_pred ccCCCCCcEEeecCCccccccccccccCccccccEEEEecccccceec
Q 044585 288 SWHLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIADCKRIEEII 335 (352)
Q Consensus 288 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~ 335 (352)
+..+++|+.|++.+|++++.++. ....+++|+.+++.+|+.++++.
T Consensus 865 i~~l~~L~~L~L~~C~~L~~l~~--~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 865 IEKFSNLSFLDMNGCNNLQRVSL--NISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred HhcCCCCCEEECCCCCCcCccCc--ccccccCCCeeecCCCccccccc
Confidence 88899999999999999999865 35678889999999999887653
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.80 E-value=1e-18 Score=181.01 Aligned_cols=298 Identities=22% Similarity=0.304 Sum_probs=150.2
Q ss_pred eeecCCccEEeccccc-----cc-eEeccCCCCC-CCceEEEecccccCcceeecCc--------cchhhhhhceeeecc
Q 044585 3 TLEFPSLEQVSMTHCP-----NM-KTFSRGISST-PKLYVVQVTEREEGEHHWEGNK--------LNSTIQKCYEVMIGF 67 (352)
Q Consensus 3 ~~~l~~L~~L~l~~~~-----~l-~~l~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~ 67 (352)
+..+++|+.|.+.... .. ..+|.++..+ ++|+.|.+.++.+...+..... .+..+..++..+..+
T Consensus 554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l 633 (1153)
T PLN03210 554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSL 633 (1153)
T ss_pred HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccC
Confidence 3456777777775431 11 1344444433 3577777665433332210000 022344455555566
Q ss_pred CccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeecccccc
Q 044585 68 RDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAK 147 (352)
Q Consensus 68 ~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 147 (352)
++|+.|+++++..++.++.- ..+++|++|++.+|..+...+ .. +..+++|+.|++++|..++.++...
T Consensus 634 ~~Lk~L~Ls~~~~l~~ip~l-----s~l~~Le~L~L~~c~~L~~lp-~s-i~~L~~L~~L~L~~c~~L~~Lp~~i----- 701 (1153)
T PLN03210 634 TGLRNIDLRGSKNLKEIPDL-----SMATNLETLKLSDCSSLVELP-SS-IQYLNKLEDLDMSRCENLEILPTGI----- 701 (1153)
T ss_pred CCCCEEECCCCCCcCcCCcc-----ccCCcccEEEecCCCCccccc-hh-hhccCCCCEEeCCCCCCcCccCCcC-----
Confidence 67777777666555554321 245667777777766554433 22 4566677777777776666553321
Q ss_pred ccccCCCCcccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC--CCCccchhhh
Q 044585 148 EEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ--KLTSEENFLL 225 (352)
Q Consensus 148 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~--~~~~l~~~~~ 225 (352)
.+++|+.|++++|..++.++. ..++|+.|.+.++ .++.+ |..+ .+++|+.|. .+... .+..
T Consensus 702 ------~l~sL~~L~Lsgc~~L~~~p~------~~~nL~~L~L~~n-~i~~l-P~~~--~l~~L~~L~l~~~~~~-~l~~ 764 (1153)
T PLN03210 702 ------NLKSLYRLNLSGCSRLKSFPD------ISTNISWLDLDET-AIEEF-PSNL--RLENLDELILCEMKSE-KLWE 764 (1153)
T ss_pred ------CCCCCCEEeCCCCCCcccccc------ccCCcCeeecCCC-ccccc-cccc--cccccccccccccchh-hccc
Confidence 356666777766665554432 1245666666554 23332 3322 344555444 11100 0000
Q ss_pred hcccCCCCC-cccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCcc
Q 044585 226 AHQVQPLFD-EKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHR 304 (352)
Q Consensus 226 ~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~ 304 (352)
......+ ....+++|+.|++++|+.+..+|... ..+++|+.|++++|..++.+|... .+++|+.|++++|..
T Consensus 765 --~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si----~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~ 837 (1153)
T PLN03210 765 --RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSI----QNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSR 837 (1153)
T ss_pred --cccccchhhhhccccchheeCCCCCCccccChhh----hCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCc
Confidence 0000000 00123455556665555555554332 355555666665555555555443 455555555555554
Q ss_pred ccccccc------------------cccCccccccEEEEecccccceecc
Q 044585 305 LINLLTL------------------STSRSLIILQSMTIADCKRIEEIIQ 336 (352)
Q Consensus 305 l~~~~~~------------------~~~~~l~~L~~L~i~~c~~l~~~~~ 336 (352)
+..++.. .....+++|+.|++.+|++++.+..
T Consensus 838 L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~ 887 (1153)
T PLN03210 838 LRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSL 887 (1153)
T ss_pred cccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCc
Confidence 4333210 1235678899999999999887654
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.78 E-value=5.7e-19 Score=181.85 Aligned_cols=61 Identities=15% Similarity=0.081 Sum_probs=32.3
Q ss_pred cCCcceEEEecCCCcccccCCccCCCCCcEEeecCCccccccccccccCccccccEEEEeccc
Q 044585 267 FANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIADCK 329 (352)
Q Consensus 267 ~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 329 (352)
.++|+.|++.++.....+|..+..+++|++|++++|..-...+. .+..+++|+.|+++++.
T Consensus 379 ~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~Ls~N~ 439 (968)
T PLN00113 379 SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS--EFTKLPLVYFLDISNNN 439 (968)
T ss_pred cCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECCh--hHhcCCCCCEEECcCCc
Confidence 34455555555433334444455566677777766643323221 34456667777776653
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.77 E-value=1.5e-18 Score=178.71 Aligned_cols=88 Identities=18% Similarity=0.066 Sum_probs=59.2
Q ss_pred cCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCccccccccccccCccc
Q 044585 239 FPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTSRSLI 318 (352)
Q Consensus 239 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~ 318 (352)
+++|+.|++++++....++ ..+ ..+++|+.|++.+|.....+|..+..+++|+.|+++++. ++...+ .....++
T Consensus 379 ~~~L~~L~l~~n~l~~~~p-~~~---~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~ 452 (968)
T PLN00113 379 SGNLFKLILFSNSLEGEIP-KSL---GACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN-LQGRIN-SRKWDMP 452 (968)
T ss_pred cCCCCEEECcCCEecccCC-HHH---hCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCc-ccCccC-hhhccCC
Confidence 3455555555533222222 222 468899999999986555677778889999999998775 444323 2345688
Q ss_pred cccEEEEecccccc
Q 044585 319 ILQSMTIADCKRIE 332 (352)
Q Consensus 319 ~L~~L~i~~c~~l~ 332 (352)
+|+.|++++|....
T Consensus 453 ~L~~L~L~~n~~~~ 466 (968)
T PLN00113 453 SLQMLSLARNKFFG 466 (968)
T ss_pred CCcEEECcCceeee
Confidence 99999999986543
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.67 E-value=1.4e-17 Score=151.60 Aligned_cols=289 Identities=16% Similarity=0.196 Sum_probs=154.6
Q ss_pred ecCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCc----------cchhhhhhceeee-ccCcccee
Q 044585 5 EFPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNK----------LNSTIQKCYEVMI-GFRDIEHL 73 (352)
Q Consensus 5 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~----------~~~~~~~l~~~~~-~~~~L~~L 73 (352)
.+|+|+.+.+..| .++.+|.......+|+.|+|.++.+.+..-+..+ ....+.+++..-+ .-+++++|
T Consensus 100 nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L 178 (873)
T KOG4194|consen 100 NLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKL 178 (873)
T ss_pred cCCcceeeeeccc-hhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEE
Confidence 4788888888887 7888887666777788888887655543311100 0112223332222 22567777
Q ss_pred EeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCC
Q 044585 74 QLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGP 153 (352)
Q Consensus 74 ~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~ 153 (352)
+++++. ++.+..+. +. .+.+|..|.++.+ .++..++. .+++++.|+.|++..+. ++.+ .. ..++
T Consensus 179 ~La~N~-It~l~~~~-F~--~lnsL~tlkLsrN-rittLp~r-~Fk~L~~L~~LdLnrN~-iriv-e~-------ltFq- 242 (873)
T KOG4194|consen 179 NLASNR-ITTLETGH-FD--SLNSLLTLKLSRN-RITTLPQR-SFKRLPKLESLDLNRNR-IRIV-EG-------LTFQ- 242 (873)
T ss_pred eecccc-cccccccc-cc--ccchheeeecccC-cccccCHH-Hhhhcchhhhhhccccc-eeee-hh-------hhhc-
Confidence 777766 66655444 32 3667788888876 45555443 47778888888887643 3322 00 0011
Q ss_pred CCcccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCC
Q 044585 154 RFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPL 232 (352)
Q Consensus 154 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~ 232 (352)
.+++|+.|.+.... +..+- ++.+..+.++++|+++.. .+......+++ +++.|+.|+ +.+.+..+..+.
T Consensus 243 gL~Sl~nlklqrN~-I~kL~--DG~Fy~l~kme~l~L~~N-~l~~vn~g~lf-gLt~L~~L~lS~NaI~rih~d~----- 312 (873)
T KOG4194|consen 243 GLPSLQNLKLQRND-ISKLD--DGAFYGLEKMEHLNLETN-RLQAVNEGWLF-GLTSLEQLDLSYNAIQRIHIDS----- 312 (873)
T ss_pred CchhhhhhhhhhcC-ccccc--Ccceeeecccceeecccc-hhhhhhccccc-ccchhhhhccchhhhheeecch-----
Confidence 45666666553321 11111 113444555666665544 34433233333 555566655 555554443332
Q ss_pred CCcccccCCcceeeccccccccccc------------------------ccccccccccCCcceEEEecCCC---ccccc
Q 044585 233 FDEKLTFPQLKELKLSRLHKVQHLW------------------------KENDESNKAFANLKSLEIFECSK---LQKLV 285 (352)
Q Consensus 233 ~~~~~~~~~L~~L~l~~~~~l~~l~------------------------~~~~~~~~~~~~L~~L~l~~c~~---l~~l~ 285 (352)
|.-.++|++|+|+. +.++.++ ...+ ..+.+|+.|+++++.- +++-.
T Consensus 313 ---WsftqkL~~LdLs~-N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af---~~lssL~~LdLr~N~ls~~IEDaa 385 (873)
T KOG4194|consen 313 ---WSFTQKLKELDLSS-NRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAF---VGLSSLHKLDLRSNELSWCIEDAA 385 (873)
T ss_pred ---hhhcccceeEeccc-cccccCChhHHHHHHHhhhhcccccchHHHHhhHH---HHhhhhhhhcCcCCeEEEEEecch
Confidence 23444555555554 3444444 4333 4455555555555421 12211
Q ss_pred CCccCCCCCcEEeecCCccccccccccccCccccccEEEEeccc
Q 044585 286 PASWHLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIADCK 329 (352)
Q Consensus 286 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 329 (352)
..+..+++|+.|.+.+ ++++.++. ..+..++.|+.|++.+.+
T Consensus 386 ~~f~gl~~LrkL~l~g-Nqlk~I~k-rAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 386 VAFNGLPSLRKLRLTG-NQLKSIPK-RAFSGLEALEHLDLGDNA 427 (873)
T ss_pred hhhccchhhhheeecC-ceeeecch-hhhccCcccceecCCCCc
Confidence 2344577777777733 36666643 456667777777776654
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.61 E-value=7.7e-18 Score=154.54 Aligned_cols=280 Identities=18% Similarity=0.240 Sum_probs=143.6
Q ss_pred cCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceec
Q 044585 6 FPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIW 85 (352)
Q Consensus 6 l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~ 85 (352)
|.+|++|.+.++ ++..+....+.++.||.+.++.+ +.....+|..++.+..|..|+++.+. +++.|
T Consensus 54 lqkLEHLs~~HN-~L~~vhGELs~Lp~LRsv~~R~N------------~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP 119 (1255)
T KOG0444|consen 54 LQKLEHLSMAHN-QLISVHGELSDLPRLRSVIVRDN------------NLKNSGIPTDIFRLKDLTILDLSHNQ-LREVP 119 (1255)
T ss_pred Hhhhhhhhhhhh-hhHhhhhhhccchhhHHHhhhcc------------ccccCCCCchhcccccceeeecchhh-hhhcc
Confidence 445555555554 33333333444555555555532 33445566666667777777777665 66655
Q ss_pred cCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeecc----ccc--------cccccC-
Q 044585 86 HGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEE----LNA--------KEEHIG- 152 (352)
Q Consensus 86 ~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~----~~~--------~~~~~~- 152 (352)
.+. +.-+++..|+++++ ++..+ |-..+.+++.|-.|+++++ .++.+|+-.. +.. ...-+.
T Consensus 120 ~~L----E~AKn~iVLNLS~N-~IetI-Pn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQ 192 (1255)
T KOG0444|consen 120 TNL----EYAKNSIVLNLSYN-NIETI-PNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQ 192 (1255)
T ss_pred hhh----hhhcCcEEEEcccC-ccccC-CchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCCChhhHHHHhc
Confidence 554 34456666666664 44443 3334455556666666553 2333322100 000 000000
Q ss_pred -CCCcccCeeccccccc-cccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhccc
Q 044585 153 -PRFPRLNRLRLIDLPK-LKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQV 229 (352)
Q Consensus 153 -~~~~~L~~L~l~~~~~-l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~ 229 (352)
+.+++|++|++++... +..++. .+..+.+|+.++++.. ++... |.++. ++++|++|. +.+.++.+....
T Consensus 193 LPsmtsL~vLhms~TqRTl~N~Pt---sld~l~NL~dvDlS~N-~Lp~v-Pecly-~l~~LrrLNLS~N~iteL~~~~-- 264 (1255)
T KOG0444|consen 193 LPSMTSLSVLHMSNTQRTLDNIPT---SLDDLHNLRDVDLSEN-NLPIV-PECLY-KLRNLRRLNLSGNKITELNMTE-- 264 (1255)
T ss_pred CccchhhhhhhcccccchhhcCCC---chhhhhhhhhcccccc-CCCcc-hHHHh-hhhhhheeccCcCceeeeeccH--
Confidence 0233344444433221 111222 3334555666666433 44443 55555 566666666 555655554332
Q ss_pred CCCCCcccccCCcceeecccccccccccccccccccccCCcceEEEecCC-CcccccCCccCCCCCcEEeecCCcccccc
Q 044585 230 QPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECS-KLQKLVPASWHLENLEALKVSKCHRLINL 308 (352)
Q Consensus 230 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~-~l~~l~~~~~~~~~L~~L~l~~c~~l~~~ 308 (352)
+.+.+|++|+++. ++++.+|... ..+++|+.|.+.++. ....+|.+++.+-.|+++...++ +++-+
T Consensus 265 -------~~W~~lEtLNlSr-NQLt~LP~av----cKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN-~LElV 331 (1255)
T KOG0444|consen 265 -------GEWENLETLNLSR-NQLTVLPDAV----CKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN-KLELV 331 (1255)
T ss_pred -------HHHhhhhhhcccc-chhccchHHH----hhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc-ccccC
Confidence 2245666666666 5666666443 356667776665542 12356667777777777777443 55655
Q ss_pred ccccccCccccccEEEEeccc
Q 044585 309 LTLSTSRSLIILQSMTIADCK 329 (352)
Q Consensus 309 ~~~~~~~~l~~L~~L~i~~c~ 329 (352)
|. ..-.|+.|+.|.+....
T Consensus 332 PE--glcRC~kL~kL~L~~Nr 350 (1255)
T KOG0444|consen 332 PE--GLCRCVKLQKLKLDHNR 350 (1255)
T ss_pred ch--hhhhhHHHHHhcccccc
Confidence 43 34567888888877653
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.58 E-value=7.3e-17 Score=148.23 Aligned_cols=288 Identities=15% Similarity=0.144 Sum_probs=188.4
Q ss_pred eecCCccEEeccccccce--EeccCCCCCCCceEEEecccccCccee----------ecCccchhhhhhceee-eccCcc
Q 044585 4 LEFPSLEQVSMTHCPNMK--TFSRGISSTPKLYVVQVTEREEGEHHW----------EGNKLNSTIQKCYEVM-IGFRDI 70 (352)
Q Consensus 4 ~~l~~L~~L~l~~~~~l~--~l~~~~~~~~~L~~L~l~~~~~~~~~~----------~~~~~~~~~~~l~~~~-~~~~~L 70 (352)
..+|.||.+.++++ ++. .+|..++++.-|.+|||+++.+.+-+. ... .+..|+.+|... .++..|
T Consensus 75 s~Lp~LRsv~~R~N-~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNL-S~N~IetIPn~lfinLtDL 152 (1255)
T KOG0444|consen 75 SDLPRLRSVIVRDN-NLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNL-SYNNIETIPNSLFINLTDL 152 (1255)
T ss_pred ccchhhHHHhhhcc-ccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEc-ccCccccCCchHHHhhHhH
Confidence 45899999999998 443 788888999999999999765554331 111 233455566443 355566
Q ss_pred ceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCC-cceeeeecccccccc
Q 044585 71 EHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDL-IEEVLHLEELNAKEE 149 (352)
Q Consensus 71 ~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~-l~~~~~~~~~~~~~~ 149 (352)
-.|+++++. +..+|... ..+.+|+.|++++++-. ......+..+++|+.|++++-+. +..+|.-..
T Consensus 153 LfLDLS~Nr-Le~LPPQ~----RRL~~LqtL~Ls~NPL~--hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld------ 219 (1255)
T KOG0444|consen 153 LFLDLSNNR-LEMLPPQI----RRLSMLQTLKLSNNPLN--HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLD------ 219 (1255)
T ss_pred hhhccccch-hhhcCHHH----HHHhhhhhhhcCCChhh--HHHHhcCccchhhhhhhcccccchhhcCCCchh------
Confidence 666666555 55444444 45667777777765421 12223344556666666665332 222222111
Q ss_pred ccCCCCcccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcc
Q 044585 150 HIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQ 228 (352)
Q Consensus 150 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~ 228 (352)
.+.||..++++. .++...+. .+..+++|++|.+++. .++.+ ..... .-.+|+.|. +.++++.++...
T Consensus 220 ----~l~NL~dvDlS~-N~Lp~vPe---cly~l~~LrrLNLS~N-~iteL-~~~~~-~W~~lEtLNlSrNQLt~LP~av- 287 (1255)
T KOG0444|consen 220 ----DLHNLRDVDLSE-NNLPIVPE---CLYKLRNLRRLNLSGN-KITEL-NMTEG-EWENLETLNLSRNQLTVLPDAV- 287 (1255)
T ss_pred ----hhhhhhhccccc-cCCCcchH---HHhhhhhhheeccCcC-ceeee-eccHH-HHhhhhhhccccchhccchHHH-
Confidence 566888888874 34554444 5677899999999987 45544 22211 236788888 888888776653
Q ss_pred cCCCCCcccccCCcceeecccccccc--cccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCcccc
Q 044585 229 VQPLFDEKLTFPQLKELKLSRLHKVQ--HLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLI 306 (352)
Q Consensus 229 ~~~~~~~~~~~~~L~~L~l~~~~~l~--~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~ 306 (352)
-.+++|+.|.+.+ +.++ .+|... ..+..|+.+...++ +++-.|.++..|..|+.|.+ +|+++.
T Consensus 288 --------cKL~kL~kLy~n~-NkL~FeGiPSGI----GKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L-~~NrLi 352 (1255)
T KOG0444|consen 288 --------CKLTKLTKLYANN-NKLTFEGIPSGI----GKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKL-DHNRLI 352 (1255)
T ss_pred --------hhhHHHHHHHhcc-CcccccCCccch----hhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhcc-ccccee
Confidence 4578899988877 4443 344332 46667777777765 78888999999999999999 777787
Q ss_pred ccccccccCccccccEEEEecccccceec
Q 044585 307 NLLTLSTSRSLIILQSMTIADCKRIEEII 335 (352)
Q Consensus 307 ~~~~~~~~~~l~~L~~L~i~~c~~l~~~~ 335 (352)
.+|. ...-++.|+.|+++..|++.--+
T Consensus 353 TLPe--aIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 353 TLPE--AIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred echh--hhhhcCCcceeeccCCcCccCCC
Confidence 7765 45668889999999998875433
No 8
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.57 E-value=1.9e-17 Score=145.15 Aligned_cols=294 Identities=17% Similarity=0.188 Sum_probs=183.5
Q ss_pred CccEEeccccccceEeccC--CCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceec
Q 044585 8 SLEQVSMTHCPNMKTFSRG--ISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIW 85 (352)
Q Consensus 8 ~L~~L~l~~~~~l~~l~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~ 85 (352)
.||.|.++||.....-+.. -..+|+++.|++.+| .+.+...+......++.|+.|++..|..+++..
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc-----------~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~ 207 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGC-----------KKITDSSLLSLARYCRKLRHLNLHSCSSITDVS 207 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcc-----------eeccHHHHHHHHHhcchhhhhhhcccchhHHHH
Confidence 4667777777544322211 145777777777755 222222233333356777777777777666544
Q ss_pred cCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeecccc
Q 044585 86 HGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLID 165 (352)
Q Consensus 86 ~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 165 (352)
... +. +.+++|++|+++.|+.+...........+..++.+..+||..++.- .+..+.+ .++-+.++++.+
T Consensus 208 Lk~-la-~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le-~l~~~~~-------~~~~i~~lnl~~ 277 (483)
T KOG4341|consen 208 LKY-LA-EGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELE-ALLKAAA-------YCLEILKLNLQH 277 (483)
T ss_pred HHH-HH-HhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHH-HHHHHhc-------cChHhhccchhh
Confidence 332 22 3567777777777777666444444556666777766677655431 1111111 444555666667
Q ss_pred ccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC--CCCccchhhhhcccCCCCCcccccCCcc
Q 044585 166 LPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ--KLTSEENFLLAHQVQPLFDEKLTFPQLK 243 (352)
Q Consensus 166 ~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~--~~~~l~~~~~~~~~~~~~~~~~~~~~L~ 243 (352)
|..+++..... .-..+..|+.|..++|..+++.+...+.+++++|+.+. .|.+++......- -.+++.|+
T Consensus 278 c~~lTD~~~~~-i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l-------~rn~~~Le 349 (483)
T KOG4341|consen 278 CNQLTDEDLWL-IACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTML-------GRNCPHLE 349 (483)
T ss_pred hccccchHHHH-HhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhh-------hcCChhhh
Confidence 76665432111 23345678888888888888877777888888888887 7777665433221 13577888
Q ss_pred eeecccccccccccccccccccccCCcceEEEecCCCcccc-----cCCccCCCCCcEEeecCCccccccccccccCccc
Q 044585 244 ELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKL-----VPASWHLENLEALKVSKCHRLINLLTLSTSRSLI 318 (352)
Q Consensus 244 ~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l-----~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~ 318 (352)
.+++.+|....+-. ..+.+..++.||.+.+++|..+++. .........|+.+.+.+|+.+++. .......|+
T Consensus 350 ~l~~e~~~~~~d~t--L~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~-~Le~l~~c~ 426 (483)
T KOG4341|consen 350 RLDLEECGLITDGT--LASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDA-TLEHLSICR 426 (483)
T ss_pred hhcccccceehhhh--HhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHH-HHHHHhhCc
Confidence 88888876544431 1122358899999999998776654 234467788999999999988887 345667888
Q ss_pred cccEEEEecccccce
Q 044585 319 ILQSMTIADCKRIEE 333 (352)
Q Consensus 319 ~L~~L~i~~c~~l~~ 333 (352)
+|+.+++.+|..+..
T Consensus 427 ~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 427 NLERIELIDCQDVTK 441 (483)
T ss_pred ccceeeeechhhhhh
Confidence 999999998876543
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.51 E-value=1.7e-15 Score=138.15 Aligned_cols=249 Identities=14% Similarity=0.207 Sum_probs=120.1
Q ss_pred CCccEEeccccccceEec-cCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeec-cCccceeEeccCCCccee
Q 044585 7 PSLEQVSMTHCPNMKTFS-RGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIG-FRDIEHLQLSHFPRLREI 84 (352)
Q Consensus 7 ~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~L~~L~l~~~~~l~~~ 84 (352)
.++++|+|.+| .++.+. ..|..+.+|.+|.|++ ..+..+|...++ +++|+.|++..+. ++.+
T Consensus 173 ~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkLsr--------------NrittLp~r~Fk~L~~L~~LdLnrN~-iriv 236 (873)
T KOG4194|consen 173 VNIKKLNLASN-RITTLETGHFDSLNSLLTLKLSR--------------NRITTLPQRSFKRLPKLESLDLNRNR-IRIV 236 (873)
T ss_pred CCceEEeeccc-cccccccccccccchheeeeccc--------------CcccccCHHHhhhcchhhhhhccccc-eeee
Confidence 57888888887 676664 3356777888888884 344555544433 6777777776554 4332
Q ss_pred -ccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCC-----------------------cceeee
Q 044585 85 -WHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDL-----------------------IEEVLH 140 (352)
Q Consensus 85 -~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~-----------------------l~~~~~ 140 (352)
|..- ..+++|+.|.+..+ .+.. ...+.+-.|..+++|++..++. ++.+ .
T Consensus 237 e~ltF----qgL~Sl~nlklqrN-~I~k-L~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~ri-h 309 (873)
T KOG4194|consen 237 EGLTF----QGLPSLQNLKLQRN-DISK-LDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRI-H 309 (873)
T ss_pred hhhhh----cCchhhhhhhhhhc-Cccc-ccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhhee-e
Confidence 2211 23455555555443 2222 1122233445555555554332 2222 1
Q ss_pred eccccccccccCCCCcccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCc
Q 044585 141 LEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTS 219 (352)
Q Consensus 141 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~ 219 (352)
..+|. ..++|+.|+++.. .+..+... .+..+..|++|.++.. .+..+ ....+..+.+|+.|+ +.+.
T Consensus 310 ---~d~Ws-----ftqkL~~LdLs~N-~i~~l~~~--sf~~L~~Le~LnLs~N-si~~l-~e~af~~lssL~~LdLr~N~ 376 (873)
T KOG4194|consen 310 ---IDSWS-----FTQKLKELDLSSN-RITRLDEG--SFRVLSQLEELNLSHN-SIDHL-AEGAFVGLSSLHKLDLRSNE 376 (873)
T ss_pred ---cchhh-----hcccceeEecccc-ccccCChh--HHHHHHHhhhhccccc-chHHH-HhhHHHHhhhhhhhcCcCCe
Confidence 11121 3344554444432 22222111 2333444555555443 33332 333333455555555 4444
Q ss_pred cchhhhhcccCCCCCcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEee
Q 044585 220 EENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKV 299 (352)
Q Consensus 220 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l 299 (352)
+...+..+.. .+..+++|+.|++.+ ++++.++..++ ..++.|+.|++.++.....=+..+..+ .|++|.+
T Consensus 377 ls~~IEDaa~-----~f~gl~~LrkL~l~g-Nqlk~I~krAf---sgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 377 LSWCIEDAAV-----AFNGLPSLRKLRLTG-NQLKSIPKRAF---SGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVM 446 (873)
T ss_pred EEEEEecchh-----hhccchhhhheeecC-ceeeecchhhh---ccCcccceecCCCCcceeecccccccc-hhhhhhh
Confidence 4433322211 123456666666666 56666666665 566666666666653222222334444 5555555
Q ss_pred cC
Q 044585 300 SK 301 (352)
Q Consensus 300 ~~ 301 (352)
..
T Consensus 447 nS 448 (873)
T KOG4194|consen 447 NS 448 (873)
T ss_pred cc
Confidence 33
No 10
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.37 E-value=7.3e-15 Score=129.15 Aligned_cols=293 Identities=14% Similarity=0.129 Sum_probs=206.9
Q ss_pred eeecCCccEEeccccccceEec-cCC-CCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCC
Q 044585 3 TLEFPSLEQVSMTHCPNMKTFS-RGI-SSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPR 80 (352)
Q Consensus 3 ~~~l~~L~~L~l~~~~~l~~l~-~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 80 (352)
+..+|++++|.+.+|.++++-. ..+ ..|++|+.|++..| .+.+...+-.....+++|++|+++-|+.
T Consensus 160 ~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c-----------~~iT~~~Lk~la~gC~kL~~lNlSwc~q 228 (483)
T KOG4341|consen 160 ASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSC-----------SSITDVSLKYLAEGCRKLKYLNLSWCPQ 228 (483)
T ss_pred hhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhccc-----------chhHHHHHHHHHHhhhhHHHhhhccCch
Confidence 4568999999999998776432 112 36999999999965 2222222333344789999999999998
Q ss_pred cceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCe
Q 044585 81 LREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNR 160 (352)
Q Consensus 81 l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~ 160 (352)
+....... +.. .+.+++.+...||..........+...+..+..+++..|..+++.- + |.. -. .+..|+.
T Consensus 229 i~~~gv~~-~~r-G~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~-~-----~~i-~~-~c~~lq~ 298 (483)
T KOG4341|consen 229 ISGNGVQA-LQR-GCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDED-L-----WLI-AC-GCHALQV 298 (483)
T ss_pred hhcCcchH-Hhc-cchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchH-H-----HHH-hh-hhhHhhh
Confidence 87644443 333 5667888988899877655444445677788888888998877641 1 100 00 4668999
Q ss_pred eccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC--CCCccchhhhhcccCCCCCcccc
Q 044585 161 LRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ--KLTSEENFLLAHQVQPLFDEKLT 238 (352)
Q Consensus 161 L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~--~~~~l~~~~~~~~~~~~~~~~~~ 238 (352)
++.++|.++.+..... -...+++|+.|-+.+|..+++.-...+..+++.|+.++ .|..++...... . ..+
T Consensus 299 l~~s~~t~~~d~~l~a-Lg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~s-l------s~~ 370 (483)
T KOG4341|consen 299 LCYSSCTDITDEVLWA-LGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLAS-L------SRN 370 (483)
T ss_pred hcccCCCCCchHHHHH-HhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhh-h------ccC
Confidence 9999998876543222 34567999999999999888776667777899999998 676655431110 0 136
Q ss_pred cCCcceeeccccccccccccccccc-ccccCCcceEEEecCCCccc-ccCCccCCCCCcEEeecCCccccccccccccCc
Q 044585 239 FPQLKELKLSRLHKVQHLWKENDES-NKAFANLKSLEIFECSKLQK-LVPASWHLENLEALKVSKCHRLINLLTLSTSRS 316 (352)
Q Consensus 239 ~~~L~~L~l~~~~~l~~l~~~~~~~-~~~~~~L~~L~l~~c~~l~~-l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 316 (352)
+|.|+.+.++.|..+++....++.. ......|..+.+.+|+.+++ ....+..+++|+.+++..|..++..+......+
T Consensus 371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~ 450 (483)
T KOG4341|consen 371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATH 450 (483)
T ss_pred CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhh
Confidence 8999999999998877763332211 13567899999999998774 334556789999999999999888776667777
Q ss_pred cccccEEE
Q 044585 317 LIILQSMT 324 (352)
Q Consensus 317 l~~L~~L~ 324 (352)
+|+++...
T Consensus 451 lp~i~v~a 458 (483)
T KOG4341|consen 451 LPNIKVHA 458 (483)
T ss_pred Cccceehh
Confidence 77776543
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.29 E-value=2e-11 Score=119.50 Aligned_cols=74 Identities=23% Similarity=0.179 Sum_probs=37.0
Q ss_pred CcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCccccccccccccCccccc
Q 044585 241 QLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTSRSLIIL 320 (352)
Q Consensus 241 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L 320 (352)
+|+.|++++ +.++.++. ..++|+.|+++++ .++.+|.. ..+|+.|+++++ +++.+|. .+..+++|
T Consensus 383 ~L~~LdLs~-N~Lt~LP~-------l~s~L~~LdLS~N-~LssIP~l---~~~L~~L~Ls~N-qLt~LP~--sl~~L~~L 447 (788)
T PRK15387 383 GLKELIVSG-NRLTSLPV-------LPSELKELMVSGN-RLTSLPML---PSGLLSLSVYRN-QLTRLPE--SLIHLSSE 447 (788)
T ss_pred ccceEEecC-CcccCCCC-------cccCCCEEEccCC-cCCCCCcc---hhhhhhhhhccC-cccccCh--HHhhccCC
Confidence 566666665 34444441 2345666666665 34455422 234555666433 4454432 13345556
Q ss_pred cEEEEeccc
Q 044585 321 QSMTIADCK 329 (352)
Q Consensus 321 ~~L~i~~c~ 329 (352)
+.|++++++
T Consensus 448 ~~LdLs~N~ 456 (788)
T PRK15387 448 TTVNLEGNP 456 (788)
T ss_pred CeEECCCCC
Confidence 666666554
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.28 E-value=1.3e-13 Score=132.06 Aligned_cols=110 Identities=18% Similarity=0.197 Sum_probs=74.0
Q ss_pred eecCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcce
Q 044585 4 LEFPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLRE 83 (352)
Q Consensus 4 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~ 83 (352)
..-++|+.|...+|+..+..+ .....+|+++++++ .....+|..++.+++|+.+....+. ++.
T Consensus 216 ~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~--------------n~l~~lp~wi~~~~nle~l~~n~N~-l~~ 278 (1081)
T KOG0618|consen 216 ISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISH--------------NNLSNLPEWIGACANLEALNANHNR-LVA 278 (1081)
T ss_pred ecCcchheeeeccCcceeecc--ccccccceeeecch--------------hhhhcchHHHHhcccceEecccchh-HHh
Confidence 345667777777764332221 12366788888883 3556677777788999999988877 676
Q ss_pred eccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCccee
Q 044585 84 IWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEV 138 (352)
Q Consensus 84 ~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 138 (352)
++... ...++|++|.+..| .+...+++ ...+++|+.|+++.+. +..+
T Consensus 279 lp~ri----~~~~~L~~l~~~~n-el~yip~~--le~~~sL~tLdL~~N~-L~~l 325 (1081)
T KOG0618|consen 279 LPLRI----SRITSLVSLSAAYN-ELEYIPPF--LEGLKSLRTLDLQSNN-LPSL 325 (1081)
T ss_pred hHHHH----hhhhhHHHHHhhhh-hhhhCCCc--ccccceeeeeeehhcc-cccc
Confidence 66555 34678888888887 56776664 3467888899988754 4433
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.27 E-value=1.1e-11 Score=121.95 Aligned_cols=246 Identities=12% Similarity=0.130 Sum_probs=152.0
Q ss_pred CCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceecc
Q 044585 7 PSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWH 86 (352)
Q Consensus 7 ~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~ 86 (352)
.+...|.+.++ +++.+|..+ .++|+.|++++| .+..+|..+. .+|++|+++++. ++.++.
T Consensus 178 ~~~~~L~L~~~-~LtsLP~~I--p~~L~~L~Ls~N--------------~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~ 237 (754)
T PRK15370 178 NNKTELRLKIL-GLTTIPACI--PEQITTLILDNN--------------ELKSLPENLQ--GNIKTLYANSNQ-LTSIPA 237 (754)
T ss_pred cCceEEEeCCC-CcCcCCccc--ccCCcEEEecCC--------------CCCcCChhhc--cCCCEEECCCCc-cccCCh
Confidence 45677888876 777787655 467899999843 4445555433 578999998876 766433
Q ss_pred CCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccc
Q 044585 87 GQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDL 166 (352)
Q Consensus 87 ~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 166 (352)
. ..++|+.|++++| ++... |.. + .++|+.|++++| .+..++.. ..++|+.|+++++
T Consensus 238 ~------l~~~L~~L~Ls~N-~L~~L-P~~-l--~s~L~~L~Ls~N-~L~~LP~~------------l~~sL~~L~Ls~N 293 (754)
T PRK15370 238 T------LPDTIQEMELSIN-RITEL-PER-L--PSALQSLDLFHN-KISCLPEN------------LPEELRYLSVYDN 293 (754)
T ss_pred h------hhccccEEECcCC-ccCcC-Chh-H--hCCCCEEECcCC-ccCccccc------------cCCCCcEEECCCC
Confidence 2 2457888999887 45543 333 2 357888888864 45444321 2347888888775
Q ss_pred cccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCccee
Q 044585 167 PKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKEL 245 (352)
Q Consensus 167 ~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L 245 (352)
+++.++.. ..++|+.|.++++ .++.+ |..+. ++|+.|+ ..+.++.++.. ..++|+.|
T Consensus 294 -~Lt~LP~~-----lp~sL~~L~Ls~N-~Lt~L-P~~l~---~sL~~L~Ls~N~Lt~LP~~-----------l~~sL~~L 351 (754)
T PRK15370 294 -SIRTLPAH-----LPSGITHLNVQSN-SLTAL-PETLP---PGLKTLEAGENALTSLPAS-----------LPPELQVL 351 (754)
T ss_pred -ccccCccc-----chhhHHHHHhcCC-ccccC-Ccccc---ccceeccccCCccccCChh-----------hcCcccEE
Confidence 35544321 1247788888776 45543 44332 5777777 55555543321 13578888
Q ss_pred ecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCccccccccc--cccCccccccEE
Q 044585 246 KLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTL--STSRSLIILQSM 323 (352)
Q Consensus 246 ~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~l~~L~~L 323 (352)
+++++ .++.++.. ..++|+.|++++| .++.+|..+. .+|+.|+++++ +++.+|.. .....++++..+
T Consensus 352 ~Ls~N-~L~~LP~~------lp~~L~~LdLs~N-~Lt~LP~~l~--~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L 420 (754)
T PRK15370 352 DVSKN-QITVLPET------LPPTITTLDVSRN-ALTNLPENLP--AALQIMQASRN-NLVRLPESLPHFRGEGPQPTRI 420 (754)
T ss_pred ECCCC-CCCcCChh------hcCCcCEEECCCC-cCCCCCHhHH--HHHHHHhhccC-CcccCchhHHHHhhcCCCccEE
Confidence 88884 56666532 3467888888887 5667765432 36778888664 45555321 122234667777
Q ss_pred EEeccc
Q 044585 324 TIADCK 329 (352)
Q Consensus 324 ~i~~c~ 329 (352)
++.+.+
T Consensus 421 ~L~~Np 426 (754)
T PRK15370 421 IVEYNP 426 (754)
T ss_pred EeeCCC
Confidence 777765
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.21 E-value=5.8e-14 Score=123.03 Aligned_cols=241 Identities=17% Similarity=0.156 Sum_probs=133.3
Q ss_pred cCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceec
Q 044585 6 FPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIW 85 (352)
Q Consensus 6 l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~ 85 (352)
++.|.+|+++++ .+..+|+.++.+..++.++.+ -..+.++|..++.+++|+.++.+.+. +.+.+
T Consensus 67 L~~l~vl~~~~n-~l~~lp~aig~l~~l~~l~vs--------------~n~ls~lp~~i~s~~~l~~l~~s~n~-~~el~ 130 (565)
T KOG0472|consen 67 LACLTVLNVHDN-KLSQLPAAIGELEALKSLNVS--------------HNKLSELPEQIGSLISLVKLDCSSNE-LKELP 130 (565)
T ss_pred ccceeEEEeccc-hhhhCCHHHHHHHHHHHhhcc--------------cchHhhccHHHhhhhhhhhhhccccc-eeecC
Confidence 444555555554 445555555555555555555 23455666666677777777766655 55544
Q ss_pred cCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeecccc
Q 044585 86 HGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLID 165 (352)
Q Consensus 86 ~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 165 (352)
.+. +.+..|..++..++ ++...++ + +..+.+|..+++.++.. +..++... .+.+|++++..+
T Consensus 131 ~~i----~~~~~l~dl~~~~N-~i~slp~-~-~~~~~~l~~l~~~~n~l-~~l~~~~i----------~m~~L~~ld~~~ 192 (565)
T KOG0472|consen 131 DSI----GRLLDLEDLDATNN-QISSLPE-D-MVNLSKLSKLDLEGNKL-KALPENHI----------AMKRLKHLDCNS 192 (565)
T ss_pred chH----HHHhhhhhhhcccc-ccccCch-H-HHHHHHHHHhhccccch-hhCCHHHH----------HHHHHHhcccch
Confidence 444 45556666666554 4444332 2 34555666666666432 22211110 355666655432
Q ss_pred ccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCcce
Q 044585 166 LPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKE 244 (352)
Q Consensus 166 ~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~ 244 (352)
. .++.++. .+..+.+|+.|++... ++..+ | .+ ..|..|++++ +-++++-++... ...++++..
T Consensus 193 N-~L~tlP~---~lg~l~~L~~LyL~~N-ki~~l-P-ef-~gcs~L~Elh~g~N~i~~lpae~--------~~~L~~l~v 256 (565)
T KOG0472|consen 193 N-LLETLPP---ELGGLESLELLYLRRN-KIRFL-P-EF-PGCSLLKELHVGENQIEMLPAEH--------LKHLNSLLV 256 (565)
T ss_pred h-hhhcCCh---hhcchhhhHHHHhhhc-ccccC-C-CC-CccHHHHHHHhcccHHHhhHHHH--------hccccccee
Confidence 1 2344444 4556666666666664 34433 3 22 2566666666 555555554443 234667777
Q ss_pred eecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCc
Q 044585 245 LKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCH 303 (352)
Q Consensus 245 L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~ 303 (352)
||+.+ ++++.+|++.. .+.+|..|+++++ .+..+|..++.+ .|+.|.+.+++
T Consensus 257 LDLRd-Nklke~Pde~c----lLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 257 LDLRD-NKLKEVPDEIC----LLRSLERLDLSNN-DISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred eeccc-cccccCchHHH----HhhhhhhhcccCC-ccccCCcccccc-eeeehhhcCCc
Confidence 77777 56777776643 5666777777765 456677666666 66666666654
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.19 E-value=8.2e-11 Score=115.32 Aligned_cols=228 Identities=18% Similarity=0.168 Sum_probs=130.8
Q ss_pred CCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceecc
Q 044585 7 PSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWH 86 (352)
Q Consensus 7 ~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~ 86 (352)
++|+.|.+.+| +++.+|.. .++|++|++++| .+..+|. ..++|++|++.++. +..++.
T Consensus 222 ~~L~~L~L~~N-~Lt~LP~l---p~~Lk~LdLs~N--------------~LtsLP~---lp~sL~~L~Ls~N~-L~~Lp~ 279 (788)
T PRK15387 222 AHITTLVIPDN-NLTSLPAL---PPELRTLEVSGN--------------QLTSLPV---LPPGLLELSIFSNP-LTHLPA 279 (788)
T ss_pred cCCCEEEccCC-cCCCCCCC---CCCCcEEEecCC--------------ccCcccC---cccccceeeccCCc-hhhhhh
Confidence 46899999987 78877753 689999999954 3333442 13466677766655 443221
Q ss_pred CCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeec----cccccccccC--CCC-cccC
Q 044585 87 GQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLE----ELNAKEEHIG--PRF-PRLN 159 (352)
Q Consensus 87 ~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~----~~~~~~~~~~--~~~-~~L~ 159 (352)
.+++|+.|++++| .+...+. ..++|+.|++++| .+..++... .+......+. +.+ ++|+
T Consensus 280 -------lp~~L~~L~Ls~N-~Lt~LP~-----~p~~L~~LdLS~N-~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq 345 (788)
T PRK15387 280 -------LPSGLCKLWIFGN-QLTSLPV-----LPPGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTSLPTLPSGLQ 345 (788)
T ss_pred -------chhhcCEEECcCC-ccccccc-----cccccceeECCCC-ccccCCCCcccccccccccCccccccccccccc
Confidence 2345666666665 3443321 2345666666654 233322100 0000000000 012 2566
Q ss_pred eeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccc
Q 044585 160 RLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLT 238 (352)
Q Consensus 160 ~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~ 238 (352)
.|+++++ +++.++. ..++|+.|.++++ .+..+ |.. ..+|+.|+ +.+.++.++. .
T Consensus 346 ~LdLS~N-~Ls~LP~------lp~~L~~L~Ls~N-~L~~L-P~l----~~~L~~LdLs~N~Lt~LP~------------l 400 (788)
T PRK15387 346 ELSVSDN-QLASLPT------LPSELYKLWAYNN-RLTSL-PAL----PSGLKELIVSGNRLTSLPV------------L 400 (788)
T ss_pred eEecCCC-ccCCCCC------CCcccceehhhcc-ccccC-ccc----ccccceEEecCCcccCCCC------------c
Confidence 6666553 2333322 1245666666554 34433 321 24566666 5555554321 1
Q ss_pred cCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCcc
Q 044585 239 FPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHR 304 (352)
Q Consensus 239 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~ 304 (352)
.++|+.|++++ +.++.+|. .+.+|+.|+++++ .++.+|..+..+++|+.|++++++-
T Consensus 401 ~s~L~~LdLS~-N~LssIP~-------l~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 401 PSELKELMVSG-NRLTSLPM-------LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred ccCCCEEEccC-CcCCCCCc-------chhhhhhhhhccC-cccccChHHhhccCCCeEECCCCCC
Confidence 35899999999 46777762 3457889999987 6888998888999999999988753
No 16
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.18 E-value=8.8e-14 Score=121.92 Aligned_cols=261 Identities=19% Similarity=0.213 Sum_probs=178.0
Q ss_pred ccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceeccCC
Q 044585 9 LEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWHGQ 88 (352)
Q Consensus 9 L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 88 (352)
+..|.+.++ .+..+......+..|.+|++. .....++|..++.+..++.++.+.++ +..++...
T Consensus 47 l~~lils~N-~l~~l~~dl~nL~~l~vl~~~--------------~n~l~~lp~aig~l~~l~~l~vs~n~-ls~lp~~i 110 (565)
T KOG0472|consen 47 LQKLILSHN-DLEVLREDLKNLACLTVLNVH--------------DNKLSQLPAAIGELEALKSLNVSHNK-LSELPEQI 110 (565)
T ss_pred hhhhhhccC-chhhccHhhhcccceeEEEec--------------cchhhhCCHHHHHHHHHHHhhcccch-HhhccHHH
Confidence 455666666 455555555667778888877 34566778778888888888888776 66666655
Q ss_pred CCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccccc
Q 044585 89 AVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPK 168 (352)
Q Consensus 89 ~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 168 (352)
+.+.+|++++.+.+ .+...++ + +..+-.|+.++..+++ +...+.... .+.+|..+.+.+. +
T Consensus 111 ----~s~~~l~~l~~s~n-~~~el~~-~-i~~~~~l~dl~~~~N~-i~slp~~~~----------~~~~l~~l~~~~n-~ 171 (565)
T KOG0472|consen 111 ----GSLISLVKLDCSSN-ELKELPD-S-IGRLLDLEDLDATNNQ-ISSLPEDMV----------NLSKLSKLDLEGN-K 171 (565)
T ss_pred ----hhhhhhhhhhcccc-ceeecCc-h-HHHHhhhhhhhccccc-cccCchHHH----------HHHHHHHhhcccc-c
Confidence 56777888887776 3444332 2 4566777777776654 333322111 4556666666543 2
Q ss_pred cccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCcceeec
Q 044585 169 LKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKELKL 247 (352)
Q Consensus 169 l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l 247 (352)
++..+. ....+..|++|+.... .++.+ |..++ .+.+|+.|+ .-+++..++ +++.+..|++|.+
T Consensus 172 l~~l~~---~~i~m~~L~~ld~~~N-~L~tl-P~~lg-~l~~L~~LyL~~Nki~~lP----------ef~gcs~L~Elh~ 235 (565)
T KOG0472|consen 172 LKALPE---NHIAMKRLKHLDCNSN-LLETL-PPELG-GLESLELLYLRRNKIRFLP----------EFPGCSLLKELHV 235 (565)
T ss_pred hhhCCH---HHHHHHHHHhcccchh-hhhcC-Chhhc-chhhhHHHHhhhcccccCC----------CCCccHHHHHHHh
Confidence 444333 2233677888876543 45554 66665 677777777 666666554 2466789999999
Q ss_pred ccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCccccccccccccCccccccEEEEec
Q 044585 248 SRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIAD 327 (352)
Q Consensus 248 ~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~ 327 (352)
+. +.++.++.++. ..++++.+|+++++ +++++|.++..+.+|++||++++ .++.+|. -..++ .|+.|.+.+
T Consensus 236 g~-N~i~~lpae~~---~~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSNN-~is~Lp~--sLgnl-hL~~L~leG 306 (565)
T KOG0472|consen 236 GE-NQIEMLPAEHL---KHLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSNN-DISSLPY--SLGNL-HLKFLALEG 306 (565)
T ss_pred cc-cHHHhhHHHHh---cccccceeeecccc-ccccCchHHHHhhhhhhhcccCC-ccccCCc--ccccc-eeeehhhcC
Confidence 88 78888888776 78999999999997 89999999999999999999655 6677754 23445 688888888
Q ss_pred cc
Q 044585 328 CK 329 (352)
Q Consensus 328 c~ 329 (352)
.|
T Consensus 307 NP 308 (565)
T KOG0472|consen 307 NP 308 (565)
T ss_pred Cc
Confidence 76
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.18 E-value=3e-11 Score=118.76 Aligned_cols=223 Identities=13% Similarity=0.121 Sum_probs=153.1
Q ss_pred CCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceecc
Q 044585 7 PSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWH 86 (352)
Q Consensus 7 ~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~ 86 (352)
++|+.|++.+| .++.+|..+ ..+|++|++++| .+..+|..+ .++|+.|++++|. +..++.
T Consensus 199 ~~L~~L~Ls~N-~LtsLP~~l--~~nL~~L~Ls~N--------------~LtsLP~~l--~~~L~~L~Ls~N~-L~~LP~ 258 (754)
T PRK15370 199 EQITTLILDNN-ELKSLPENL--QGNIKTLYANSN--------------QLTSIPATL--PDTIQEMELSINR-ITELPE 258 (754)
T ss_pred cCCcEEEecCC-CCCcCChhh--ccCCCEEECCCC--------------ccccCChhh--hccccEEECcCCc-cCcCCh
Confidence 47999999998 788888766 369999999954 344455433 2579999999987 666443
Q ss_pred CCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccc
Q 044585 87 GQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDL 166 (352)
Q Consensus 87 ~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 166 (352)
. ..++|+.|+++++ .+... |.. -.++|+.|++++|. ++.++.. ..++|+.|++.++
T Consensus 259 ~------l~s~L~~L~Ls~N-~L~~L-P~~---l~~sL~~L~Ls~N~-Lt~LP~~------------lp~sL~~L~Ls~N 314 (754)
T PRK15370 259 R------LPSALQSLDLFHN-KISCL-PEN---LPEELRYLSVYDNS-IRTLPAH------------LPSGITHLNVQSN 314 (754)
T ss_pred h------HhCCCCEEECcCC-ccCcc-ccc---cCCCCcEEECCCCc-cccCccc------------chhhHHHHHhcCC
Confidence 3 3458999999977 56654 333 23589999999874 4443210 2347888888775
Q ss_pred cccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCccee
Q 044585 167 PKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKEL 245 (352)
Q Consensus 167 ~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L 245 (352)
. +..++. ..+++|+.|.+.+| .++.+ |..+. ++|+.|+ ..+.++.++.. ..++|+.|
T Consensus 315 ~-Lt~LP~-----~l~~sL~~L~Ls~N-~Lt~L-P~~l~---~sL~~L~Ls~N~L~~LP~~-----------lp~~L~~L 372 (754)
T PRK15370 315 S-LTALPE-----TLPPGLKTLEAGEN-ALTSL-PASLP---PELQVLDVSKNQITVLPET-----------LPPTITTL 372 (754)
T ss_pred c-cccCCc-----cccccceeccccCC-ccccC-Chhhc---CcccEEECCCCCCCcCChh-----------hcCCcCEE
Confidence 3 444332 12468999999888 46654 55543 7888888 66666654322 13689999
Q ss_pred ecccccccccccccccccccccCCcceEEEecCCCcccccCCc----cCCCCCcEEeecCCc
Q 044585 246 KLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPAS----WHLENLEALKVSKCH 303 (352)
Q Consensus 246 ~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~----~~~~~L~~L~l~~c~ 303 (352)
++++| .++.+|.. ...+|+.|+++++ +++.+|..+ ...+++..+++.+++
T Consensus 373 dLs~N-~Lt~LP~~------l~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 373 DVSRN-ALTNLPEN------LPAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred ECCCC-cCCCCCHh------HHHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 99995 67777654 2347999999987 567776543 345788999997765
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.15 E-value=2.8e-12 Score=123.17 Aligned_cols=246 Identities=17% Similarity=0.160 Sum_probs=136.5
Q ss_pred cCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceec
Q 044585 6 FPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIW 85 (352)
Q Consensus 6 l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~ 85 (352)
-.+|+++++.++ ++..+|..+..+.+|+.++..+ ..+..+|..+....+|+.|.+..|. +..++
T Consensus 240 p~nl~~~dis~n-~l~~lp~wi~~~~nle~l~~n~--------------N~l~~lp~ri~~~~~L~~l~~~~ne-l~yip 303 (1081)
T KOG0618|consen 240 PLNLQYLDISHN-NLSNLPEWIGACANLEALNANH--------------NRLVALPLRISRITSLVSLSAAYNE-LEYIP 303 (1081)
T ss_pred cccceeeecchh-hhhcchHHHHhcccceEecccc--------------hhHHhhHHHHhhhhhHHHHHhhhhh-hhhCC
Confidence 468899999997 8888997778999999999993 3456777777777888888877776 66655
Q ss_pred cCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCC-CcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccc
Q 044585 86 HGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNN-LRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLI 164 (352)
Q Consensus 86 ~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 164 (352)
... +.+++|++|++..+ ++...++ ..+..... |+.|..+.+ .++..+..++ . .++.|+.|.+.
T Consensus 304 ~~l----e~~~sL~tLdL~~N-~L~~lp~-~~l~v~~~~l~~ln~s~n-~l~~lp~~~e------~---~~~~Lq~Lyla 367 (1081)
T KOG0618|consen 304 PFL----EGLKSLRTLDLQSN-NLPSLPD-NFLAVLNASLNTLNVSSN-KLSTLPSYEE------N---NHAALQELYLA 367 (1081)
T ss_pred Ccc----cccceeeeeeehhc-cccccch-HHHhhhhHHHHHHhhhhc-cccccccccc------h---hhHHHHHHHHh
Confidence 544 45788888888876 5555443 32333222 444444432 2332222211 0 34455555554
Q ss_pred cccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCcc
Q 044585 165 DLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLK 243 (352)
Q Consensus 165 ~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~ 243 (352)
+..--...++ .+..+++|+.|++++. .+..+ |.+...++..|++|. +.++++.++.. +..++.|+
T Consensus 368 nN~Ltd~c~p---~l~~~~hLKVLhLsyN-rL~~f-pas~~~kle~LeeL~LSGNkL~~Lp~t---------va~~~~L~ 433 (1081)
T KOG0618|consen 368 NNHLTDSCFP---VLVNFKHLKVLHLSYN-RLNSF-PASKLRKLEELEELNLSGNKLTTLPDT---------VANLGRLH 433 (1081)
T ss_pred cCcccccchh---hhccccceeeeeeccc-ccccC-CHHHHhchHHhHHHhcccchhhhhhHH---------HHhhhhhH
Confidence 4321111111 3445566666666554 34433 555554555555555 55555555533 23455555
Q ss_pred eeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCC-CCCcEEeecCCcc
Q 044585 244 ELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHL-ENLEALKVSKCHR 304 (352)
Q Consensus 244 ~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~-~~L~~L~l~~c~~ 304 (352)
+|.... +.+..+|.. ..++.|+.++++.+ .++.+.-..... ++|++|+++++.+
T Consensus 434 tL~ahs-N~l~~fPe~-----~~l~qL~~lDlS~N-~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 434 TLRAHS-NQLLSFPEL-----AQLPQLKVLDLSCN-NLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred HHhhcC-Cceeechhh-----hhcCcceEEecccc-hhhhhhhhhhCCCcccceeeccCCcc
Confidence 555554 445555522 35555555555543 333211110111 5555555555543
No 19
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.11 E-value=3.5e-11 Score=120.18 Aligned_cols=108 Identities=21% Similarity=0.262 Sum_probs=76.2
Q ss_pred ecCCccEEecccccc-ceEeccC-CCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcc
Q 044585 5 EFPSLEQVSMTHCPN-MKTFSRG-ISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLR 82 (352)
Q Consensus 5 ~l~~L~~L~l~~~~~-l~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~ 82 (352)
.+++|++|-+.++.. +..++.. |..++.|++||++ .|....++|..++.+.+||.|+++++. ++
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs-------------~~~~l~~LP~~I~~Li~LryL~L~~t~-I~ 608 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLS-------------GNSSLSKLPSSIGELVHLRYLDLSDTG-IS 608 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECC-------------CCCccCcCChHHhhhhhhhcccccCCC-cc
Confidence 356788888877753 5555554 3468888888888 456777888888888888888888776 77
Q ss_pred eeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccC
Q 044585 83 EIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNC 132 (352)
Q Consensus 83 ~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~ 132 (352)
.+|.+. +++..|.+|++..+..+... .+....+++|++|.+...
T Consensus 609 ~LP~~l----~~Lk~L~~Lnl~~~~~l~~~--~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 609 HLPSGL----GNLKKLIYLNLEVTGRLESI--PGILLELQSLRVLRLPRS 652 (889)
T ss_pred ccchHH----HHHHhhheeccccccccccc--cchhhhcccccEEEeecc
Confidence 766665 67778888888776555443 233455788888887653
No 20
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.05 E-value=4.4e-11 Score=119.42 Aligned_cols=278 Identities=19% Similarity=0.233 Sum_probs=155.6
Q ss_pred eecCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcce
Q 044585 4 LEFPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLRE 83 (352)
Q Consensus 4 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~ 83 (352)
.++|.|++|++++|..+..+|..++.+.+||+|+++ .+.+..+|..+.++..|.+|++..+..+..
T Consensus 568 ~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~--------------~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~ 633 (889)
T KOG4658|consen 568 RSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLS--------------DTGISHLPSGLGNLKKLIYLNLEVTGRLES 633 (889)
T ss_pred hhCcceEEEECCCCCccCcCChHHhhhhhhhccccc--------------CCCccccchHHHHHHhhheecccccccccc
Confidence 458999999999999999999999999999999999 567788999999999999999998775554
Q ss_pred eccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCe---
Q 044585 84 IWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNR--- 160 (352)
Q Consensus 84 ~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~--- 160 (352)
.+... ..+++|++|.+..-....+......+..+.+|+.+....... ..+..+. .+++|.+
T Consensus 634 ~~~i~----~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~-----------~~~~L~~~~~ 697 (889)
T KOG4658|consen 634 IPGIL----LELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLEDLL-----------GMTRLRSLLQ 697 (889)
T ss_pred ccchh----hhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhhhh-----------hhHHHHHHhH
Confidence 32222 358899999997753111211222345566666666644332 1111111 2334432
Q ss_pred -eccccccccccccccCCceeeccCcceEeeccCCCCcccc---cchhhhc-cCCCCCCC--CCCccchhhhhcccCCCC
Q 044585 161 -LRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFI---SNSVVHV-TTNNKEPQ--KLTSEENFLLAHQVQPLF 233 (352)
Q Consensus 161 -L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~---~~~~~~~-~~~L~~L~--~~~~l~~~~~~~~~~~~~ 233 (352)
+.+.++..-.. . .....+.+|+.|.+.+|...+... ....... ++++..+. .|.........
T Consensus 698 ~l~~~~~~~~~~-~---~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~------- 766 (889)
T KOG4658|consen 698 SLSIEGCSKRTL-I---SSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWL------- 766 (889)
T ss_pred hhhhccccccee-e---cccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchh-------
Confidence 22222211111 1 145678899999999996543221 0000101 23343333 45444332211
Q ss_pred CcccccCCcceeeccccccccccccccccc------ccccCCcceE-EEecCCCcccccCCccCCCCCcEEeecCCcccc
Q 044585 234 DEKLTFPQLKELKLSRLHKVQHLWKENDES------NKAFANLKSL-EIFECSKLQKLVPASWHLENLEALKVSKCHRLI 306 (352)
Q Consensus 234 ~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~------~~~~~~L~~L-~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~ 306 (352)
...|+|+.|.+..|..++.+....... ...++++..+ .+.+.+++..+-..-...+.|+.+.+..|+++.
T Consensus 767 ---~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~ 843 (889)
T KOG4658|consen 767 ---LFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLG 843 (889)
T ss_pred ---hccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccc
Confidence 234788888888887777654321100 0123333334 233333333221111223346666666666554
Q ss_pred ccccccccCccccccEEEEecc-ccccee
Q 044585 307 NLLTLSTSRSLIILQSMTIADC-KRIEEI 334 (352)
Q Consensus 307 ~~~~~~~~~~l~~L~~L~i~~c-~~l~~~ 334 (352)
.+ |.+..+.+.+| +++...
T Consensus 844 ~~---------P~~~~~~i~~~~~~~~~~ 863 (889)
T KOG4658|consen 844 KL---------PLLSTLTIVGCEEKLKEY 863 (889)
T ss_pred cC---------ccccccceeccccceeec
Confidence 43 34566777775 444443
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.89 E-value=3.5e-11 Score=94.11 Aligned_cols=159 Identities=18% Similarity=0.258 Sum_probs=111.1
Q ss_pred eecCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcce
Q 044585 4 LEFPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLRE 83 (352)
Q Consensus 4 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~ 83 (352)
+.+.++..|.++++ +++.+|+.+..+.+|++|+++ |..++++|.+++.++.|+.|++.-+. +..
T Consensus 30 f~~s~ITrLtLSHN-Kl~~vppnia~l~nlevln~~--------------nnqie~lp~~issl~klr~lnvgmnr-l~~ 93 (264)
T KOG0617|consen 30 FNMSNITRLTLSHN-KLTVVPPNIAELKNLEVLNLS--------------NNQIEELPTSISSLPKLRILNVGMNR-LNI 93 (264)
T ss_pred cchhhhhhhhcccC-ceeecCCcHHHhhhhhhhhcc--------------cchhhhcChhhhhchhhhheecchhh-hhc
Confidence 44677888999998 899999999999999999999 66788889888899999999888544 666
Q ss_pred eccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeecc
Q 044585 84 IWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRL 163 (352)
Q Consensus 84 ~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l 163 (352)
.+.+- |.+|-|+.|++..+.-.+...| +-+..++.|+-|.++.++ .+.++...+ .+++|+.|.+
T Consensus 94 lprgf----gs~p~levldltynnl~e~~lp-gnff~m~tlralyl~dnd-fe~lp~dvg----------~lt~lqil~l 157 (264)
T KOG0617|consen 94 LPRGF----GSFPALEVLDLTYNNLNENSLP-GNFFYMTTLRALYLGDND-FEILPPDVG----------KLTNLQILSL 157 (264)
T ss_pred Ccccc----CCCchhhhhhccccccccccCC-cchhHHHHHHHHHhcCCC-cccCChhhh----------hhcceeEEee
Confidence 66665 6788899998887632233334 335567788888887743 444443222 6667777766
Q ss_pred ccccccccccccCCceeeccCcceEeeccCCCCccc
Q 044585 164 IDLPKLKRFCNFTGNIIELSELENLTIENCPDMETF 199 (352)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 199 (352)
.+..-++ ++. ++..+..|++|++.+. .++.+
T Consensus 158 rdndll~-lpk---eig~lt~lrelhiqgn-rl~vl 188 (264)
T KOG0617|consen 158 RDNDLLS-LPK---EIGDLTRLRELHIQGN-RLTVL 188 (264)
T ss_pred ccCchhh-CcH---HHHHHHHHHHHhcccc-eeeec
Confidence 5543222 222 4556777888888776 45544
No 22
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=5e-10 Score=99.64 Aligned_cols=164 Identities=15% Similarity=0.195 Sum_probs=107.1
Q ss_pred ecCCccEEeccccccceEecc--CCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcc
Q 044585 5 EFPSLEQVSMTHCPNMKTFSR--GISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLR 82 (352)
Q Consensus 5 ~l~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~ 82 (352)
++.+|+...|+++ .....+. ....|++.+.||++++-+..| ..+-.....+|+|+.|+++.+. +.
T Consensus 119 n~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw-----------~~v~~i~eqLp~Le~LNls~Nr-l~ 185 (505)
T KOG3207|consen 119 NLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNW-----------FPVLKIAEQLPSLENLNLSSNR-LS 185 (505)
T ss_pred hHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhH-----------HHHHHHHHhcccchhccccccc-cc
Confidence 3678999999988 5555443 334699999999995422222 2222334589999999999877 55
Q ss_pred eeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCccee-eeeccccccccccCCCCcccCee
Q 044585 83 EIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEV-LHLEELNAKEEHIGPRFPRLNRL 161 (352)
Q Consensus 83 ~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~~~~~~~~~~~L~~L 161 (352)
..+... . ...+++|+.|.++.| ++..-.....+..+|+|+.|.+.++..+... .+.. .+..|+.|
T Consensus 186 ~~~~s~-~-~~~l~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~-----------i~~~L~~L 251 (505)
T KOG3207|consen 186 NFISSN-T-TLLLSHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTK-----------ILQTLQEL 251 (505)
T ss_pred CCcccc-c-hhhhhhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcccccceecchhh-----------hhhHHhhc
Confidence 433332 1 136889999999999 5553333344678999999999998522111 0111 45678888
Q ss_pred ccccccccccccccCCceeeccCcceEeeccCCCCcc
Q 044585 162 RLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMET 198 (352)
Q Consensus 162 ~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 198 (352)
++++...+. +.... ....+|.|+.|.++.| ++++
T Consensus 252 dLs~N~li~-~~~~~-~~~~l~~L~~Lnls~t-gi~s 285 (505)
T KOG3207|consen 252 DLSNNNLID-FDQGY-KVGTLPGLNQLNLSST-GIAS 285 (505)
T ss_pred cccCCcccc-ccccc-ccccccchhhhhcccc-Ccch
Confidence 888765433 22111 4667888888888877 4443
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.76 E-value=6e-10 Score=100.40 Aligned_cols=65 Identities=14% Similarity=0.048 Sum_probs=33.1
Q ss_pred cccCCcceeecccccccccccccccc--cccccCCcceEEEecCCCcc-----cccCCccCCCCCcEEeecCCc
Q 044585 237 LTFPQLKELKLSRLHKVQHLWKENDE--SNKAFANLKSLEIFECSKLQ-----KLVPASWHLENLEALKVSKCH 303 (352)
Q Consensus 237 ~~~~~L~~L~l~~~~~l~~l~~~~~~--~~~~~~~L~~L~l~~c~~l~-----~l~~~~~~~~~L~~L~l~~c~ 303 (352)
..+++|++|++++| .+++.....+. .....+.|+.|++.+|. ++ .+...+..+++|++++++++.
T Consensus 218 ~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 218 ASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred cccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 34567777777775 33321111110 00113677777777763 32 222233445677777776653
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.73 E-value=9.1e-10 Score=96.86 Aligned_cols=252 Identities=14% Similarity=0.164 Sum_probs=127.5
Q ss_pred CccEEeccccccceEeccC-CCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceecc
Q 044585 8 SLEQVSMTHCPNMKTFSRG-ISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWH 86 (352)
Q Consensus 8 ~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~ 86 (352)
.-..+.|..| .++.+|.+ |+.+++||.|||+++.++.. -|..+..+++|-+|.+.++.++++++.
T Consensus 68 ~tveirLdqN-~I~~iP~~aF~~l~~LRrLdLS~N~Is~I-------------~p~AF~GL~~l~~Lvlyg~NkI~~l~k 133 (498)
T KOG4237|consen 68 ETVEIRLDQN-QISSIPPGAFKTLHRLRRLDLSKNNISFI-------------APDAFKGLASLLSLVLYGNNKITDLPK 133 (498)
T ss_pred cceEEEeccC-CcccCChhhccchhhhceecccccchhhc-------------ChHhhhhhHhhhHHHhhcCCchhhhhh
Confidence 3455778787 88888866 56899999999995433332 233344566777777777666777655
Q ss_pred CCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccc
Q 044585 87 GQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDL 166 (352)
Q Consensus 87 ~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 166 (352)
+. + +.+..|+.|.+.-| ++.-. ....+..+++|..|.+..+. ++.+.. +. +. .+.+++.+++...
T Consensus 134 ~~-F--~gL~slqrLllNan-~i~Ci-r~~al~dL~~l~lLslyDn~-~q~i~~-~t-------f~-~l~~i~tlhlA~n 198 (498)
T KOG4237|consen 134 GA-F--GGLSSLQRLLLNAN-HINCI-RQDALRDLPSLSLLSLYDNK-IQSICK-GT-------FQ-GLAAIKTLHLAQN 198 (498)
T ss_pred hH-h--hhHHHHHHHhcChh-hhcch-hHHHHHHhhhcchhcccchh-hhhhcc-cc-------cc-chhccchHhhhcC
Confidence 54 2 23455555555544 23222 22335566666666666532 222211 00 00 2223333333211
Q ss_pred cc--------cccccccCC-----------------------ceeeccCcceE--ee-ccCCCCcccccchhhhccCCCC
Q 044585 167 PK--------LKRFCNFTG-----------------------NIIELSELENL--TI-ENCPDMETFISNSVVHVTTNNK 212 (352)
Q Consensus 167 ~~--------l~~~~~~~~-----------------------~~~~~~~L~~L--~l-~~c~~l~~~~~~~~~~~~~~L~ 212 (352)
+. +.++....+ .-.....++.+ .+ ..| ......|..-+..+++|+
T Consensus 199 p~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d-~~d~~cP~~cf~~L~~L~ 277 (498)
T KOG4237|consen 199 PFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSED-FPDSICPAKCFKKLPNLR 277 (498)
T ss_pred ccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhcccc-CcCCcChHHHHhhcccce
Confidence 10 000000000 00000111211 01 112 122223444455666677
Q ss_pred CCC-CCCccchhhhhcccCCCCCcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCC
Q 044585 213 EPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHL 291 (352)
Q Consensus 213 ~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~ 291 (352)
+|+ +.++++.+.... +.....+++|.+.+ +++..+...++ ..+..|++|++.++..-...|..+...
T Consensus 278 ~lnlsnN~i~~i~~~a--------Fe~~a~l~eL~L~~-N~l~~v~~~~f---~~ls~L~tL~L~~N~it~~~~~aF~~~ 345 (498)
T KOG4237|consen 278 KLNLSNNKITRIEDGA--------FEGAAELQELYLTR-NKLEFVSSGMF---QGLSGLKTLSLYDNQITTVAPGAFQTL 345 (498)
T ss_pred EeccCCCccchhhhhh--------hcchhhhhhhhcCc-chHHHHHHHhh---hccccceeeeecCCeeEEEeccccccc
Confidence 666 666666554432 34456677777776 56666666666 567777777777763322334455666
Q ss_pred CCCcEEeecC
Q 044585 292 ENLEALKVSK 301 (352)
Q Consensus 292 ~~L~~L~l~~ 301 (352)
.+|.+|.+-.
T Consensus 346 ~~l~~l~l~~ 355 (498)
T KOG4237|consen 346 FSLSTLNLLS 355 (498)
T ss_pred ceeeeeehcc
Confidence 6777776643
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=3.5e-09 Score=94.34 Aligned_cols=209 Identities=17% Similarity=0.189 Sum_probs=122.8
Q ss_pred CCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccccccccc
Q 044585 93 SFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRF 172 (352)
Q Consensus 93 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 172 (352)
..+.+|+.+.+.+|+ +...+.....+.|++++.|+++++- +........ ... .+|+|+.|.++... +...
T Consensus 118 sn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL-~~nw~~v~~------i~e-qLp~Le~LNls~Nr-l~~~ 187 (505)
T KOG3207|consen 118 SNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNL-FHNWFPVLK------IAE-QLPSLENLNLSSNR-LSNF 187 (505)
T ss_pred hhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhh-HHhHHHHHH------HHH-hcccchhccccccc-ccCC
Confidence 467888888888874 3333322457788999999998743 322211111 111 78889888887643 3322
Q ss_pred cccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCc-cchhhhhcccCCCCCcccccCCcceeecccc
Q 044585 173 CNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTS-EENFLLAHQVQPLFDEKLTFPQLKELKLSRL 250 (352)
Q Consensus 173 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~-l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 250 (352)
+... ....++.|+.|.+++| ++..-...++...+|+|+.|+ ..+. +.....+ -..+..|++|+|++.
T Consensus 188 ~~s~-~~~~l~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~---------~~i~~~L~~LdLs~N 256 (505)
T KOG3207|consen 188 ISSN-TTLLLSHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIILIKATS---------TKILQTLQELDLSNN 256 (505)
T ss_pred cccc-chhhhhhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcccccceecch---------hhhhhHHhhccccCC
Confidence 2222 3346788999999998 444333456666889999888 4443 2111111 134668899999985
Q ss_pred cccccccccccccccccCCcceEEEecCCCccccc--CC-----ccCCCCCcEEeecCCccccccccccccCccccccEE
Q 044585 251 HKVQHLWKENDESNKAFANLKSLEIFECSKLQKLV--PA-----SWHLENLEALKVSKCHRLINLLTLSTSRSLIILQSM 323 (352)
Q Consensus 251 ~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~~-----~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L 323 (352)
+.+..-..... ..+|.|..|+++.| ++.++. +. ...+++|+.|.+..++- .+.+...-...+++|+.+
T Consensus 257 ~li~~~~~~~~---~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I-~~w~sl~~l~~l~nlk~l 331 (505)
T KOG3207|consen 257 NLIDFDQGYKV---GTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENNI-RDWRSLNHLRTLENLKHL 331 (505)
T ss_pred ccccccccccc---ccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCcc-ccccccchhhccchhhhh
Confidence 44443222222 57888888888887 444432 21 24578888888866543 222222233445556655
Q ss_pred EEec
Q 044585 324 TIAD 327 (352)
Q Consensus 324 ~i~~ 327 (352)
.+..
T Consensus 332 ~~~~ 335 (505)
T KOG3207|consen 332 RITL 335 (505)
T ss_pred hccc
Confidence 5443
No 26
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.61 E-value=1.5e-09 Score=85.10 Aligned_cols=130 Identities=24% Similarity=0.299 Sum_probs=96.6
Q ss_pred ecCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCccee
Q 044585 5 EFPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREI 84 (352)
Q Consensus 5 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~ 84 (352)
.+.+|++|++.++ .++.+|.+++++++|+.|+++ -..+..+|..++.||.|+.|++..+. +.+.
T Consensus 54 ~l~nlevln~~nn-qie~lp~~issl~klr~lnvg--------------mnrl~~lprgfgs~p~levldltynn-l~e~ 117 (264)
T KOG0617|consen 54 ELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVG--------------MNRLNILPRGFGSFPALEVLDLTYNN-LNEN 117 (264)
T ss_pred Hhhhhhhhhcccc-hhhhcChhhhhchhhhheecc--------------hhhhhcCccccCCCchhhhhhccccc-cccc
Confidence 4678999999887 899999999999999999999 34556788999999999999999776 5443
Q ss_pred ccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccc
Q 044585 85 WHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLI 164 (352)
Q Consensus 85 ~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 164 (352)
....-+. .++.|+.|++.++ .++..++. +.++++|+.|.++.++.++- +...+ .+.+|+.|++.
T Consensus 118 ~lpgnff--~m~tlralyl~dn-dfe~lp~d--vg~lt~lqil~lrdndll~l-pkeig----------~lt~lrelhiq 181 (264)
T KOG0617|consen 118 SLPGNFF--YMTTLRALYLGDN-DFEILPPD--VGKLTNLQILSLRDNDLLSL-PKEIG----------DLTRLRELHIQ 181 (264)
T ss_pred cCCcchh--HHHHHHHHHhcCC-CcccCChh--hhhhcceeEEeeccCchhhC-cHHHH----------HHHHHHHHhcc
Confidence 2211011 2467888899987 45555442 67899999999999776643 22221 67888888887
Q ss_pred cc
Q 044585 165 DL 166 (352)
Q Consensus 165 ~~ 166 (352)
+.
T Consensus 182 gn 183 (264)
T KOG0617|consen 182 GN 183 (264)
T ss_pred cc
Confidence 64
No 27
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.61 E-value=2.9e-09 Score=101.48 Aligned_cols=248 Identities=19% Similarity=0.246 Sum_probs=144.4
Q ss_pred ccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecC-CCCcccC--CchhhhcCCCCcEEEEccCCCcceeeeec
Q 044585 66 GFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDC-TNMSSAI--PTNLLRCLNNLRCLEVRNCDLIEEVLHLE 142 (352)
Q Consensus 66 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c-~~l~~~~--~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 142 (352)
..++|+.|.+.+|..+.+.+... +. ..+++|++|++++| ....... .......+++|+.|++++|..+.+. .+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~-~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~-~l~ 262 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDA-LA-LKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDI-GLS 262 (482)
T ss_pred hCchhhHhhhcccccCChhhHHH-HH-hhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCch-hHH
Confidence 36888888888887776533221 11 25788999999873 2222221 1234567788999999988765543 111
Q ss_pred cccccccccCCCCcccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-----CC
Q 044585 143 ELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-----KL 217 (352)
Q Consensus 143 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-----~~ 217 (352)
.+.. .+++|+.|.+.+|..+++-.... ....+++|++|++++|..+++..-..+..++++|+.+. .|
T Consensus 263 ~l~~-------~c~~L~~L~l~~c~~lt~~gl~~-i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c 334 (482)
T KOG1947|consen 263 ALAS-------RCPNLETLSLSNCSNLTDEGLVS-IAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGC 334 (482)
T ss_pred HHHh-------hCCCcceEccCCCCccchhHHHH-HHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCC
Confidence 1110 47899999988887654322111 35567889999999998876643444466788888776 34
Q ss_pred CccchhhhhcccCCCCCccccc-CCcceeecccccccccccccccccccccCCcc-eEEEecCCCc-ccccCCccCCCCC
Q 044585 218 TSEENFLLAHQVQPLFDEKLTF-PQLKELKLSRLHKVQHLWKENDESNKAFANLK-SLEIFECSKL-QKLVPASWHLENL 294 (352)
Q Consensus 218 ~~l~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~-~L~l~~c~~l-~~l~~~~~~~~~L 294 (352)
..++........ ... -.+..+.+..|+.++++..... . ..... .+.+.+|+.+ ..+..-......+
T Consensus 335 ~~l~~~~l~~~~-------~~~~d~~~~~~~~~~~~l~~~~l~~~---~-~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l 403 (482)
T KOG1947|consen 335 PSLTDLSLSGLL-------TLTSDDLAELILRSCPKLTDLSLSYC---G-ISDLGLELSLRGCPNLTESLELRLCRSDSL 403 (482)
T ss_pred ccHHHHHHHHhh-------ccCchhHhHHHHhcCCCcchhhhhhh---h-ccCcchHHHhcCCcccchHHHHHhccCCcc
Confidence 445544332111 011 1444555555555544432221 1 22222 3455666666 2222222233348
Q ss_pred cEEeecCCccccccccccccCccccccEEEEecccccceec
Q 044585 295 EALKVSKCHRLINLLTLSTSRSLIILQSMTIADCKRIEEII 335 (352)
Q Consensus 295 ~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~ 335 (352)
+.|.+..|...++.........+..+..+++.+|+.+....
T Consensus 404 ~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 444 (482)
T KOG1947|consen 404 RVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKS 444 (482)
T ss_pred ceEecccCccccccchHHHhhhhhccccCCccCcccccchh
Confidence 89999888877666433222226778888888888776544
No 28
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=8e-10 Score=93.85 Aligned_cols=188 Identities=16% Similarity=0.175 Sum_probs=122.1
Q ss_pred CccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccccccccccccC
Q 044585 97 NLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFT 176 (352)
Q Consensus 97 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 176 (352)
.|++++++.. .++......++..|++|+.|.+.|...-+.+.. .++ .-.+|+.|+++.|.+++......
T Consensus 186 Rlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~---------~iA-kN~~L~~lnlsm~sG~t~n~~~l 254 (419)
T KOG2120|consen 186 RLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN---------TIA-KNSNLVRLNLSMCSGFTENALQL 254 (419)
T ss_pred hhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccCcHHHH---------HHh-ccccceeeccccccccchhHHHH
Confidence 4888888775 555544445677888888888888654333211 111 56688999999988887653332
Q ss_pred CceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC--CCCc-cc--hhhhhcccCCCCCcccccCCcceeeccccc
Q 044585 177 GNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ--KLTS-EE--NFLLAHQVQPLFDEKLTFPQLKELKLSRLH 251 (352)
Q Consensus 177 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~--~~~~-l~--~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 251 (352)
.+.++..|.+|.+++|-..+..+....++--++|+.|. .|.. +. ++..- ...+|+|.+||+++|.
T Consensus 255 -l~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL---------~~rcp~l~~LDLSD~v 324 (419)
T KOG2120|consen 255 -LLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTL---------VRRCPNLVHLDLSDSV 324 (419)
T ss_pred -HHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHH---------HHhCCceeeecccccc
Confidence 46678899999999996655543333443447777776 3322 11 11111 2357899999999988
Q ss_pred ccccccccccccccccCCcceEEEecCCCcc-cccCCccCCCCCcEEeecCCcccccc
Q 044585 252 KVQHLWKENDESNKAFANLKSLEIFECSKLQ-KLVPASWHLENLEALKVSKCHRLINL 308 (352)
Q Consensus 252 ~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~~ 308 (352)
.++.--...+ ..++.|++|.++.|-.+- .....+...|+|.+|++.+|-.-+.+
T Consensus 325 ~l~~~~~~~~---~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsdt~m 379 (419)
T KOG2120|consen 325 MLKNDCFQEF---FKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSDTTM 379 (419)
T ss_pred ccCchHHHHH---HhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccCchHH
Confidence 8776332333 578999999999886542 11125678899999999888554443
No 29
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.61 E-value=4.1e-09 Score=94.93 Aligned_cols=90 Identities=16% Similarity=0.022 Sum_probs=53.6
Q ss_pred ccCCcceeeccccccccccccccc-ccccccCCcceEEEecCCCccc-----ccCCc-cCCCCCcEEeecCCcccccc--
Q 044585 238 TFPQLKELKLSRLHKVQHLWKEND-ESNKAFANLKSLEIFECSKLQK-----LVPAS-WHLENLEALKVSKCHRLINL-- 308 (352)
Q Consensus 238 ~~~~L~~L~l~~~~~l~~l~~~~~-~~~~~~~~L~~L~l~~c~~l~~-----l~~~~-~~~~~L~~L~l~~c~~l~~~-- 308 (352)
.+++|+.|++++| .++......+ .....+++|+.|++++|. ++. +...+ ...+.|++|++.+|. +++.
T Consensus 191 ~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~ 267 (319)
T cd00116 191 ANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCND-ITDDGA 267 (319)
T ss_pred hCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCC-CCcHHH
Confidence 3468999999986 3332211111 001467899999999984 442 11111 124799999998884 3311
Q ss_pred -ccccccCccccccEEEEecccc
Q 044585 309 -LTLSTSRSLIILQSMTIADCKR 330 (352)
Q Consensus 309 -~~~~~~~~l~~L~~L~i~~c~~ 330 (352)
........+++|+.++++++.-
T Consensus 268 ~~l~~~~~~~~~L~~l~l~~N~l 290 (319)
T cd00116 268 KDLAEVLAEKESLLELDLRGNKF 290 (319)
T ss_pred HHHHHHHhcCCCccEEECCCCCC
Confidence 1112344457899999988743
No 30
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=1.1e-09 Score=93.08 Aligned_cols=143 Identities=15% Similarity=0.194 Sum_probs=87.1
Q ss_pred CceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcc
Q 044585 32 KLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSS 111 (352)
Q Consensus 32 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~ 111 (352)
.|++|||++ .+....++......+..|+.|.+.+.. +.+ +....++ .-.+|+.|++++|..++.
T Consensus 186 Rlq~lDLS~------------s~it~stl~~iLs~C~kLk~lSlEg~~-LdD-~I~~~iA--kN~~L~~lnlsm~sG~t~ 249 (419)
T KOG2120|consen 186 RLQHLDLSN------------SVITVSTLHGILSQCSKLKNLSLEGLR-LDD-PIVNTIA--KNSNLVRLNLSMCSGFTE 249 (419)
T ss_pred hhHHhhcch------------hheeHHHHHHHHHHHHhhhhccccccc-cCc-HHHHHHh--ccccceeeccccccccch
Confidence 488888883 123333444445567788888888766 433 1111122 346899999999988887
Q ss_pred cCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccccccccccccCCceeeccCcceEeec
Q 044585 112 AIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIE 191 (352)
Q Consensus 112 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~ 191 (352)
....-++.+|+.|.+|.+++|....+.... .++.--++|+.|+++++..--....-..-...+|+|.+|+++
T Consensus 250 n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv--------~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLS 321 (419)
T KOG2120|consen 250 NALQLLLSSCSRLDELNLSWCFLFTEKVTV--------AVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLS 321 (419)
T ss_pred hHHHHHHHhhhhHhhcCchHhhccchhhhH--------HHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccc
Confidence 665566788999999999998766543111 111134578888888775321111111123457777777777
Q ss_pred cCCCCcc
Q 044585 192 NCPDMET 198 (352)
Q Consensus 192 ~c~~l~~ 198 (352)
+|..++.
T Consensus 322 D~v~l~~ 328 (419)
T KOG2120|consen 322 DSVMLKN 328 (419)
T ss_pred cccccCc
Confidence 7766553
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.47 E-value=5.1e-08 Score=78.87 Aligned_cols=35 Identities=29% Similarity=0.348 Sum_probs=9.0
Q ss_pred CCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEcc
Q 044585 95 FNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRN 131 (352)
Q Consensus 95 l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 131 (352)
+++|+.|.++++ .+.... ......+++|++|.+++
T Consensus 63 L~~L~~L~L~~N-~I~~i~-~~l~~~lp~L~~L~L~~ 97 (175)
T PF14580_consen 63 LPRLKTLDLSNN-RISSIS-EGLDKNLPNLQELYLSN 97 (175)
T ss_dssp -TT--EEE--SS----S-C-HHHHHH-TT--EEE-TT
T ss_pred hhhhhhcccCCC-CCCccc-cchHHhCCcCCEEECcC
Confidence 445555555554 233321 11112345555555544
No 32
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.44 E-value=1.9e-08 Score=88.75 Aligned_cols=85 Identities=19% Similarity=0.266 Sum_probs=66.5
Q ss_pred ccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccC-CccCCCCCcEEeecCCcccccccccccc
Q 044585 236 KLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVP-ASWHLENLEALKVSKCHRLINLLTLSTS 314 (352)
Q Consensus 236 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 314 (352)
+..+|+|+.|++++ +.++.+....+ ....+++.|.+..+ +++.+.. -+..++.|++|++.++ +++.+.+ +.+
T Consensus 270 f~~L~~L~~lnlsn-N~i~~i~~~aF---e~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N-~it~~~~-~aF 342 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSN-NKITRIEDGAF---EGAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDN-QITTVAP-GAF 342 (498)
T ss_pred HhhcccceEeccCC-Cccchhhhhhh---cchhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecCC-eeEEEec-ccc
Confidence 55678999999999 78888888888 78889999999886 5555432 3567899999999655 6777654 467
Q ss_pred CccccccEEEEec
Q 044585 315 RSLIILQSMTIAD 327 (352)
Q Consensus 315 ~~l~~L~~L~i~~ 327 (352)
..+.+|..|.+-.
T Consensus 343 ~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 343 QTLFSLSTLNLLS 355 (498)
T ss_pred cccceeeeeehcc
Confidence 7888888888865
No 33
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.36 E-value=1.6e-06 Score=78.86 Aligned_cols=59 Identities=17% Similarity=0.218 Sum_probs=31.5
Q ss_pred ccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCccc-cccccccccCccccccEEEEeccccc
Q 044585 266 AFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRL-INLLTLSTSRSLIILQSMTIADCKRI 331 (352)
Q Consensus 266 ~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l-~~~~~~~~~~~l~~L~~L~i~~c~~l 331 (352)
.+++|++|.+.+|..+ .+|.. -.++|+.|++..+... ..++...++. ++ .|.+.+|..+
T Consensus 154 LPsSLk~L~Is~c~~i-~LP~~--LP~SLk~L~ls~n~~~sLeI~~~sLP~---nl-~L~f~n~lkL 213 (426)
T PRK15386 154 ISPSLKTLSLTGCSNI-ILPEK--LPESLQSITLHIEQKTTWNISFEGFPD---GL-DIDLQNSVLL 213 (426)
T ss_pred cCCcccEEEecCCCcc-cCccc--ccccCcEEEecccccccccCccccccc---cc-Eechhhhccc
Confidence 3467888888887644 34433 2357888887654211 1121222332 24 6777777554
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.26 E-value=6.3e-07 Score=72.54 Aligned_cols=38 Identities=24% Similarity=0.319 Sum_probs=10.8
Q ss_pred CCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCC
Q 044585 95 FNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCD 133 (352)
Q Consensus 95 l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~ 133 (352)
+++|++|+++++ .+........+..+++|+.|++.+|+
T Consensus 87 lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 87 LPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp -TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-G
T ss_pred CCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCc
Confidence 444555555444 23332222223344445555544443
No 35
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.18 E-value=1.3e-07 Score=90.17 Aligned_cols=222 Identities=19% Similarity=0.212 Sum_probs=113.8
Q ss_pred CCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccC-CCcceeeeeccccccccccCCCCcccCeeccccccccccc
Q 044585 94 FFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNC-DLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRF 172 (352)
Q Consensus 94 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~-~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 172 (352)
.+++|+.|.+.+|..+...........+++|++|++++| .......... .. ... .+++|+.|++..+..+.+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~----~~-~~~-~~~~L~~l~l~~~~~isd~ 259 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLL----LL-LLS-ICRKLKSLDLSGCGLVTDI 259 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHh----hh-hhh-hcCCcCccchhhhhccCch
Confidence 367788888888877665333344567788888888773 2222211000 00 111 4577788888777655443
Q ss_pred cccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC--CCCccchhhhhcccCCCCCcccccCCcceeecccc
Q 044585 173 CNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ--KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRL 250 (352)
Q Consensus 173 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~--~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 250 (352)
.... ....+++|+.|.+.+|..+++..-..++..+++|++|+ .|..++....... ...+++++.|.+..+
T Consensus 260 ~l~~-l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~-------~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 260 GLSA-LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEAL-------LKNCPNLRELKLLSL 331 (482)
T ss_pred hHHH-HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHH-------HHhCcchhhhhhhhc
Confidence 2211 12236788888877787666555556666777788777 5666533211110 123555555554443
Q ss_pred c---cccccccccccccccc--CCcceEEEecCCCcccccCCccCCCCCc-EEeecCCccccccccccccCccccccEEE
Q 044585 251 H---KVQHLWKENDESNKAF--ANLKSLEIFECSKLQKLVPASWHLENLE-ALKVSKCHRLINLLTLSTSRSLIILQSMT 324 (352)
Q Consensus 251 ~---~l~~l~~~~~~~~~~~--~~L~~L~l~~c~~l~~l~~~~~~~~~L~-~L~l~~c~~l~~~~~~~~~~~l~~L~~L~ 324 (352)
. .++....... ... ..+..+.+.+|++++.+........... .+.+.+|+.++ ............++.|+
T Consensus 332 ~~c~~l~~~~l~~~---~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~~~~~~~l~~L~ 407 (482)
T KOG1947|consen 332 NGCPSLTDLSLSGL---LTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELRLCRSDSLRVLN 407 (482)
T ss_pred CCCccHHHHHHHHh---hccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHHhccCCccceEe
Confidence 2 2333322211 111 1444455555555544322111122222 45556666663 21112223333378888
Q ss_pred Eecccccce
Q 044585 325 IADCKRIEE 333 (352)
Q Consensus 325 i~~c~~l~~ 333 (352)
+..|..++.
T Consensus 408 l~~~~~~t~ 416 (482)
T KOG1947|consen 408 LSDCRLVTD 416 (482)
T ss_pred cccCccccc
Confidence 888875544
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.95 E-value=1.9e-05 Score=52.23 Aligned_cols=60 Identities=32% Similarity=0.434 Sum_probs=36.3
Q ss_pred CccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCC
Q 044585 68 RDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCD 133 (352)
Q Consensus 68 ~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~ 133 (352)
|+|++|+++++. ++.++.+. +. .+++|++|++++| .+....+ ..+..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~-l~~i~~~~-f~--~l~~L~~L~l~~N-~l~~i~~-~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNK-LTEIPPDS-FS--NLPNLETLDLSNN-NLTSIPP-DAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSST-ESEECTTT-TT--TGTTESEEEETSS-SESEEET-TTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCC-CCccCHHH-Hc--CCCCCCEeEccCC-ccCccCH-HHHcCCCCCCEEeCcCCc
Confidence 456677777664 66655443 32 4667777777765 4554433 336667777777777653
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.89 E-value=2.4e-05 Score=51.71 Aligned_cols=57 Identities=28% Similarity=0.365 Sum_probs=25.1
Q ss_pred CcceeecccccccccccccccccccccCCcceEEEecCCCcccccC-CccCCCCCcEEeecCC
Q 044585 241 QLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVP-ASWHLENLEALKVSKC 302 (352)
Q Consensus 241 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c 302 (352)
+|++|+++++ .++.++...+ ..+++|++|+++++ .++.++. .+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f---~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSF---SNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSS-TESEECTTTT---TTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCC-CCCccCHHHH---cCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence 4444455442 4444444444 34444444444433 3333332 3344444444444443
No 38
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.86 E-value=5.5e-06 Score=70.96 Aligned_cols=196 Identities=16% Similarity=0.143 Sum_probs=109.0
Q ss_pred CCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCC
Q 044585 29 STPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTN 108 (352)
Q Consensus 29 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~ 108 (352)
.+..++.+|+..+.++.|. ++.....++|.|+.|+++.+. +.. +.+. +|. ...+|+.|.+.|. +
T Consensus 69 ~~~~v~elDL~~N~iSdWs-----------eI~~ile~lP~l~~LNls~N~-L~s-~I~~-lp~-p~~nl~~lVLNgT-~ 132 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWS-----------EIGAILEQLPALTTLNLSCNS-LSS-DIKS-LPL-PLKNLRVLVLNGT-G 132 (418)
T ss_pred HhhhhhhhhcccchhccHH-----------HHHHHHhcCccceEeeccCCc-CCC-cccc-Ccc-cccceEEEEEcCC-C
Confidence 4667777777765555553 122223478999999999877 532 2233 332 4679999999886 4
Q ss_pred CcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccccccccccccCCceeeccCcceE
Q 044585 109 MSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENL 188 (352)
Q Consensus 109 l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L 188 (352)
+.-....+.+..+|.+++|+++.++ +..+ .+ ..+.+.+..+.++++++..|+..... ..+.....||++..+
T Consensus 133 L~w~~~~s~l~~lP~vtelHmS~N~-~rq~-n~-----Dd~c~e~~s~~v~tlh~~~c~~~~w~-~~~~l~r~Fpnv~sv 204 (418)
T KOG2982|consen 133 LSWTQSTSSLDDLPKVTELHMSDNS-LRQL-NL-----DDNCIEDWSTEVLTLHQLPCLEQLWL-NKNKLSRIFPNVNSV 204 (418)
T ss_pred CChhhhhhhhhcchhhhhhhhccch-hhhh-cc-----ccccccccchhhhhhhcCCcHHHHHH-HHHhHHhhcccchhe
Confidence 4322233445678888999888763 1111 00 00000113556777888777643311 111134468899999
Q ss_pred eeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCcceeecccccccccc
Q 044585 189 TIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHL 256 (352)
Q Consensus 189 ~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l 256 (352)
.+..|+ +++...+.-...+|.+..|. ..+++... ..+.++..||.|+.|++.+.+-...+
T Consensus 205 ~v~e~P-lK~~s~ek~se~~p~~~~LnL~~~~idsw-------asvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 205 FVCEGP-LKTESSEKGSEPFPSLSCLNLGANNIDSW-------ASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred eeecCc-ccchhhcccCCCCCcchhhhhcccccccH-------HHHHHHcCCchhheeeccCCcccccc
Confidence 988884 33222222223445555454 44444321 12233567888888888876554433
No 39
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.70 E-value=9.9e-06 Score=79.61 Aligned_cols=108 Identities=18% Similarity=0.268 Sum_probs=52.6
Q ss_pred CCccEEeccccccce-EeccCCC-CCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCccee
Q 044585 7 PSLEQVSMTHCPNMK-TFSRGIS-STPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREI 84 (352)
Q Consensus 7 ~~L~~L~l~~~~~l~-~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~ 84 (352)
.+|++|++.|...+. ..+..++ .+|+|+.|.+.+- .....++...-.+||+|+.|+++++. ++.+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~------------~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl 188 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR------------QFDNDDFSQLCASFPNLRSLDISGTN-ISNL 188 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCc------------eecchhHHHHhhccCccceeecCCCC-ccCc
Confidence 356666666643322 2232222 4666666666631 01111122222356666666666665 5543
Q ss_pred ccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCC
Q 044585 85 WHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCD 133 (352)
Q Consensus 85 ~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~ 133 (352)
.|. +.++||+.|.+.+-. +........+-.+++|+.||++.-.
T Consensus 189 -~GI----S~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 189 -SGI----SRLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred -HHH----hccccHHHHhccCCC-CCchhhHHHHhcccCCCeeeccccc
Confidence 222 356666666666542 2222222334556666666666533
No 40
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.69 E-value=0.00016 Score=66.01 Aligned_cols=139 Identities=19% Similarity=0.269 Sum_probs=77.3
Q ss_pred hhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCc-ccCeeccccccccccccccCCceeeccCcceEeeccCCCC
Q 044585 118 LRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFP-RLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDM 196 (352)
Q Consensus 118 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l 196 (352)
+..+++++.|++++| .++.++ .+| +|++|.+.+|..++.++.. .+++|+.|.+.+|..+
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP--------------~LP~sLtsL~Lsnc~nLtsLP~~-----LP~nLe~L~Ls~Cs~L 107 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLP--------------VLPNELTEITIENCNNLTTLPGS-----IPEGLEKLTVCHCPEI 107 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccC--------------CCCCCCcEEEccCCCCcccCCch-----hhhhhhheEccCcccc
Confidence 345677888888877 454443 233 6777777777666554321 1346777777766544
Q ss_pred cccccchhhhccCCCCCCCCCCccchhhhhcccCCCCCcccccCCcceeecccccccccccccccccccccCCcceEEEe
Q 044585 197 ETFISNSVVHVTTNNKEPQKLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIF 276 (352)
Q Consensus 197 ~~~~~~~~~~~~~~L~~L~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~ 276 (352)
..+ .++|+.|++.+ +....+. ..+++|+.|.+.
T Consensus 108 ~sL---------------------------------------P~sLe~L~L~~-n~~~~L~-------~LPssLk~L~I~ 140 (426)
T PRK15386 108 SGL---------------------------------------PESVRSLEIKG-SATDSIK-------NVPNGLTSLSIN 140 (426)
T ss_pred ccc---------------------------------------ccccceEEeCC-CCCcccc-------cCcchHhheecc
Confidence 332 23566666653 2322222 234567777775
Q ss_pred cCCCcccccCCccCCCCCcEEeecCCccccccccccccCccccccEEEEecc
Q 044585 277 ECSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIADC 328 (352)
Q Consensus 277 ~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c 328 (352)
++...........-.++|++|++.+|..+. . +..++ .+|+.|.+..+
T Consensus 141 ~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-L-P~~LP---~SLk~L~ls~n 187 (426)
T PRK15386 141 SYNPENQARIDNLISPSLKTLSLTGCSNII-L-PEKLP---ESLQSITLHIE 187 (426)
T ss_pred ccccccccccccccCCcccEEEecCCCccc-C-ccccc---ccCcEEEeccc
Confidence 432211111011134699999999998653 3 22344 35888888764
No 41
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.67 E-value=2.7e-05 Score=72.42 Aligned_cols=171 Identities=19% Similarity=0.213 Sum_probs=83.7
Q ss_pred CCCceEEEecccccCcceeecCccchhhhhhceeeeccC-ccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCC
Q 044585 30 TPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFR-DIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTN 108 (352)
Q Consensus 30 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~ 108 (352)
...++.|++. +..+..++.....+. +|+.|+++++. +..++... +.+++|+.|.+++| .
T Consensus 115 ~~~l~~L~l~--------------~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~----~~l~~L~~L~l~~N-~ 174 (394)
T COG4886 115 LTNLTSLDLD--------------NNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPL----RNLPNLKNLDLSFN-D 174 (394)
T ss_pred ccceeEEecC--------------CcccccCccccccchhhcccccccccc-hhhhhhhh----hccccccccccCCc-h
Confidence 4556666666 334445555555553 66666666655 55432222 34666667766666 3
Q ss_pred CcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccccccccccccCCceeeccCcceE
Q 044585 109 MSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENL 188 (352)
Q Consensus 109 l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L 188 (352)
+...++. ....++|+.|+++++ .+..++...+ ....|+++.+.+...++... .+..+.++..+
T Consensus 175 l~~l~~~--~~~~~~L~~L~ls~N-~i~~l~~~~~----------~~~~L~~l~~~~N~~~~~~~----~~~~~~~l~~l 237 (394)
T COG4886 175 LSDLPKL--LSNLSNLNNLDLSGN-KISDLPPEIE----------LLSALEELDLSNNSIIELLS----SLSNLKNLSGL 237 (394)
T ss_pred hhhhhhh--hhhhhhhhheeccCC-ccccCchhhh----------hhhhhhhhhhcCCcceecch----hhhhccccccc
Confidence 4443321 114566666666664 3344332210 22235666555443222111 23334444545
Q ss_pred eeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCcceeecccc
Q 044585 189 TIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRL 250 (352)
Q Consensus 189 ~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 250 (352)
.+.+. .+..+ +.. ...+++++.|+ .++.+..+.. ++...+++.|++++.
T Consensus 238 ~l~~n-~~~~~-~~~-~~~l~~l~~L~~s~n~i~~i~~----------~~~~~~l~~L~~s~n 287 (394)
T COG4886 238 ELSNN-KLEDL-PES-IGNLSNLETLDLSNNQISSISS----------LGSLTNLRELDLSGN 287 (394)
T ss_pred ccCCc-eeeec-cch-hccccccceecccccccccccc----------ccccCccCEEeccCc
Confidence 43332 22221 122 22556666666 5555555433 134567777777773
No 42
>PLN03150 hypothetical protein; Provisional
Probab=97.65 E-value=7.2e-05 Score=73.50 Aligned_cols=73 Identities=22% Similarity=0.270 Sum_probs=43.9
Q ss_pred hhceeeeccCccceeEeccCCCcc-eeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcce
Q 044585 59 KCYEVMIGFRDIEHLQLSHFPRLR-EIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEE 137 (352)
Q Consensus 59 ~l~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 137 (352)
.+|..+..+++|+.|+++++. +. .++... +.+++|+.|++++| ++....|.. +..+++|+.|++++|.....
T Consensus 433 ~ip~~i~~L~~L~~L~Ls~N~-l~g~iP~~~----~~l~~L~~LdLs~N-~lsg~iP~~-l~~L~~L~~L~Ls~N~l~g~ 505 (623)
T PLN03150 433 FIPNDISKLRHLQSINLSGNS-IRGNIPPSL----GSITSLEVLDLSYN-SFNGSIPES-LGQLTSLRILNLNGNSLSGR 505 (623)
T ss_pred cCCHHHhCCCCCCEEECCCCc-ccCcCChHH----hCCCCCCEEECCCC-CCCCCCchH-HhcCCCCCEEECcCCccccc
Confidence 455566677777777777665 33 323222 45677777777776 455444433 55677777777777654333
Q ss_pred e
Q 044585 138 V 138 (352)
Q Consensus 138 ~ 138 (352)
+
T Consensus 506 i 506 (623)
T PLN03150 506 V 506 (623)
T ss_pred C
Confidence 3
No 43
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.62 E-value=5.4e-06 Score=81.43 Aligned_cols=62 Identities=19% Similarity=0.387 Sum_probs=28.8
Q ss_pred CccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccC
Q 044585 68 RDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNC 132 (352)
Q Consensus 68 ~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~ 132 (352)
.+|++|+++|...+...|... +.. .||+|++|.+.+- .+....-.....++|+|..||++++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~k-ig~-~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~T 183 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKK-IGT-MLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGT 183 (699)
T ss_pred HhhhhcCccccchhhccHHHH-Hhh-hCcccceEEecCc-eecchhHHHHhhccCccceeecCCC
Confidence 456666666555444444322 221 4566666666552 1211111122345566666666653
No 44
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.55 E-value=2.5e-06 Score=74.42 Aligned_cols=66 Identities=18% Similarity=0.199 Sum_probs=33.0
Q ss_pred cccCCcceeeccccccccccccccc--ccccccCCcceEEEecCCCccc-----ccCCccCCCCCcEEeecCCcc
Q 044585 237 LTFPQLKELKLSRLHKVQHLWKEND--ESNKAFANLKSLEIFECSKLQK-----LVPASWHLENLEALKVSKCHR 304 (352)
Q Consensus 237 ~~~~~L~~L~l~~~~~l~~l~~~~~--~~~~~~~~L~~L~l~~c~~l~~-----l~~~~~~~~~L~~L~l~~c~~ 304 (352)
..|++|++|.+++|.- .+-...++ ++....|+|++|.+.+|. ++. +.......|.|+.|.+.+|+.
T Consensus 238 ~s~~~L~El~l~dcll-~~~Ga~a~~~al~~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 238 SSWPHLRELNLGDCLL-ENEGAIAFVDALKESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccchheeeccccccc-ccccHHHHHHHHhccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 4456777777777632 21100000 001346777777777663 221 111223466777777766643
No 45
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.54 E-value=6.8e-05 Score=45.73 Aligned_cols=37 Identities=14% Similarity=0.345 Sum_probs=26.4
Q ss_pred CCccEEeccccccceEeccCCCCCCCceEEEecccccC
Q 044585 7 PSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEG 44 (352)
Q Consensus 7 ~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~ 44 (352)
++|++|++.+| .++++|..+..+++|++|++++|.+.
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCC
Confidence 57888888887 77777776778888888888865443
No 46
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.53 E-value=3e-05 Score=66.68 Aligned_cols=85 Identities=21% Similarity=0.261 Sum_probs=46.5
Q ss_pred cccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCccccccccccccCc
Q 044585 237 LTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTSRS 316 (352)
Q Consensus 237 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 316 (352)
+.+++|+.|++++ +.+..+.... ..+.+.++|.+.++ .++.+. ++..+-+|..|+++++ +++.+-......+
T Consensus 326 a~L~~L~~LDLS~-N~Ls~~~Gwh----~KLGNIKtL~La~N-~iE~LS-GL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~ 397 (490)
T KOG1259|consen 326 AELPQLQLLDLSG-NLLAECVGWH----LKLGNIKTLKLAQN-KIETLS-GLRKLYSLVNLDLSSN-QIEELDEVNHIGN 397 (490)
T ss_pred hhcccceEeeccc-chhHhhhhhH----hhhcCEeeeehhhh-hHhhhh-hhHhhhhheecccccc-chhhHHHhccccc
Confidence 3456666666666 3444443222 24556666666654 344442 4455666777777554 3343333344566
Q ss_pred cccccEEEEeccc
Q 044585 317 LIILQSMTIADCK 329 (352)
Q Consensus 317 l~~L~~L~i~~c~ 329 (352)
+|.|+.+.+.+.|
T Consensus 398 LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 398 LPCLETLRLTGNP 410 (490)
T ss_pred ccHHHHHhhcCCC
Confidence 6777777666655
No 47
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.45 E-value=9.8e-06 Score=70.83 Aligned_cols=40 Identities=15% Similarity=0.083 Sum_probs=23.7
Q ss_pred cCCcceeeccccccccccccccccc-ccccCCcceEEEecCC
Q 044585 239 FPQLKELKLSRLHKVQHLWKENDES-NKAFANLKSLEIFECS 279 (352)
Q Consensus 239 ~~~L~~L~l~~~~~l~~l~~~~~~~-~~~~~~L~~L~l~~c~ 279 (352)
.|+|+.|.+.++ .++.-....+.. ....|.|+.|++.+|+
T Consensus 269 ~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 269 APSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred CCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 688999998885 333211110000 0347888888888874
No 48
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.21 E-value=5.5e-05 Score=65.08 Aligned_cols=128 Identities=22% Similarity=0.324 Sum_probs=86.1
Q ss_pred cCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceec
Q 044585 6 FPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIW 85 (352)
Q Consensus 6 l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~ 85 (352)
.+.|+.|++++| .++.+..+..-.|.+++|+++++.+.. +-. ...+++|+.|+++++. ++..-
T Consensus 283 Wq~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~~--------------v~n-La~L~~L~~LDLS~N~-Ls~~~ 345 (490)
T KOG1259|consen 283 WQELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRIRT--------------VQN-LAELPQLQLLDLSGNL-LAECV 345 (490)
T ss_pred Hhhhhhcccccc-chhhhhhhhhhccceeEEeccccceee--------------ehh-hhhcccceEeecccch-hHhhh
Confidence 467888999998 788887777789999999999532211 111 3357889999999876 55421
Q ss_pred cCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeecccc
Q 044585 86 HGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLID 165 (352)
Q Consensus 86 ~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 165 (352)
.-. ..+-|++.|.+.++ .+... +-+.++-+|..|++++++ ++.+-... -|+ .+|.|+.+.+.+
T Consensus 346 Gwh----~KLGNIKtL~La~N-~iE~L---SGL~KLYSLvnLDl~~N~-Ie~ldeV~-------~IG-~LPCLE~l~L~~ 408 (490)
T KOG1259|consen 346 GWH----LKLGNIKTLKLAQN-KIETL---SGLRKLYSLVNLDLSSNQ-IEELDEVN-------HIG-NLPCLETLRLTG 408 (490)
T ss_pred hhH----hhhcCEeeeehhhh-hHhhh---hhhHhhhhheeccccccc-hhhHHHhc-------ccc-cccHHHHHhhcC
Confidence 111 24668899999886 34443 226678889999999864 33321111 223 899999988877
Q ss_pred cc
Q 044585 166 LP 167 (352)
Q Consensus 166 ~~ 167 (352)
.|
T Consensus 409 NP 410 (490)
T KOG1259|consen 409 NP 410 (490)
T ss_pred CC
Confidence 65
No 49
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.98 E-value=0.00035 Score=64.96 Aligned_cols=174 Identities=22% Similarity=0.277 Sum_probs=117.2
Q ss_pred cCCccEEeccccccceEeccCCCCCC-CceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCccee
Q 044585 6 FPSLEQVSMTHCPNMKTFSRGISSTP-KLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREI 84 (352)
Q Consensus 6 l~~L~~L~l~~~~~l~~l~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~ 84 (352)
++.++.|.+.++ .+..++....... +|+.|+++ +..+..+|..+..+++|+.|+++++. +.++
T Consensus 115 ~~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~--------------~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l 178 (394)
T COG4886 115 LTNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLS--------------DNKIESLPSPLRNLPNLKNLDLSFND-LSDL 178 (394)
T ss_pred ccceeEEecCCc-ccccCccccccchhhccccccc--------------ccchhhhhhhhhccccccccccCCch-hhhh
Confidence 467889999887 7888888777774 99999999 45667777777899999999999998 7775
Q ss_pred ccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccc
Q 044585 85 WHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLI 164 (352)
Q Consensus 85 ~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 164 (352)
+... +..++|+.|.++++ .+...++. ......|++|.+.++..++...... .+.++..+.+.
T Consensus 179 ~~~~----~~~~~L~~L~ls~N-~i~~l~~~--~~~~~~L~~l~~~~N~~~~~~~~~~-----------~~~~l~~l~l~ 240 (394)
T COG4886 179 PKLL----SNLSNLNNLDLSGN-KISDLPPE--IELLSALEELDLSNNSIIELLSSLS-----------NLKNLSGLELS 240 (394)
T ss_pred hhhh----hhhhhhhheeccCC-ccccCchh--hhhhhhhhhhhhcCCcceecchhhh-----------hcccccccccC
Confidence 5543 25789999999997 56665532 2355669999999875444332222 44455555533
Q ss_pred cccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccc
Q 044585 165 DLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEE 221 (352)
Q Consensus 165 ~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~ 221 (352)
+.. +..+.. ....+++++.|.++++ .+.++.. .....+++.|+ ..+.+.
T Consensus 241 ~n~-~~~~~~---~~~~l~~l~~L~~s~n-~i~~i~~---~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 241 NNK-LEDLPE---SIGNLSNLETLDLSNN-QISSISS---LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred Cce-eeeccc---hhccccccceeccccc-ccccccc---ccccCccCEEeccCcccc
Confidence 322 222111 4566778999988876 4555422 33667777777 444443
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.98 E-value=0.0011 Score=40.43 Aligned_cols=39 Identities=28% Similarity=0.457 Sum_probs=23.6
Q ss_pred CCcceEEEecCCCcccccCCccCCCCCcEEeecCCcccccc
Q 044585 268 ANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINL 308 (352)
Q Consensus 268 ~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~ 308 (352)
++|++|+++++ +++.+++.+..+++|+.|+++++ .++++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N-~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNN-PISDI 39 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSS-CCSBE
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCC-CCCCC
Confidence 35667777766 56666655667777777777666 34444
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.97 E-value=0.00025 Score=61.06 Aligned_cols=66 Identities=17% Similarity=0.157 Sum_probs=30.8
Q ss_pred cCCcceeecccccccccccccccccccccCCcceEEEecCCCccccc--CCccCCCCCcEEeecCCcccccc
Q 044585 239 FPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLV--PASWHLENLEALKVSKCHRLINL 308 (352)
Q Consensus 239 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~~~~~~~~L~~L~l~~c~~l~~~ 308 (352)
||++..+-+..|+.-+--...+. ..+|.+-.|+++.. ++.++. +.+..+++|+.|.+.+.|-.+.+
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~s---e~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGS---EPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred cccchheeeecCcccchhhcccC---CCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 56666666665533221111222 24444444544432 222221 23456666666666666554443
No 52
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=96.93 E-value=3.3e-05 Score=71.80 Aligned_cols=102 Identities=21% Similarity=0.270 Sum_probs=53.2
Q ss_pred CCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceecc
Q 044585 7 PSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWH 86 (352)
Q Consensus 7 ~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~ 86 (352)
-.|+.+.+..+ .+..+|..+..+..|.++||+.+. +..+|..+..+| |+.|.+++++ ++.++.
T Consensus 98 ~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~Nq--------------lS~lp~~lC~lp-Lkvli~sNNk-l~~lp~ 160 (722)
T KOG0532|consen 98 VSLESLILYHN-CIRTIPEAICNLEALTFLDLSSNQ--------------LSHLPDGLCDLP-LKVLIVSNNK-LTSLPE 160 (722)
T ss_pred HHHHHHHHHhc-cceecchhhhhhhHHHHhhhccch--------------hhcCChhhhcCc-ceeEEEecCc-cccCCc
Confidence 34455555554 566677767777777777777432 222333322222 5555555554 555555
Q ss_pred CCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccC
Q 044585 87 GQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNC 132 (352)
Q Consensus 87 ~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~ 132 (352)
++ +..++|.+|+++.| ++...+ ..+..+.+|+.|.++.+
T Consensus 161 ~i----g~~~tl~~ld~s~n-ei~slp--sql~~l~slr~l~vrRn 199 (722)
T KOG0532|consen 161 EI----GLLPTLAHLDVSKN-EIQSLP--SQLGYLTSLRDLNVRRN 199 (722)
T ss_pred cc----ccchhHHHhhhhhh-hhhhch--HHhhhHHHHHHHHHhhh
Confidence 44 44555666666555 343332 22445555555555543
No 53
>PLN03150 hypothetical protein; Provisional
Probab=96.82 E-value=0.0017 Score=63.95 Aligned_cols=109 Identities=17% Similarity=0.146 Sum_probs=69.2
Q ss_pred ccceeEeccCCCcc-eeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeecccccc
Q 044585 69 DIEHLQLSHFPRLR-EIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAK 147 (352)
Q Consensus 69 ~L~~L~l~~~~~l~-~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 147 (352)
.++.|+|+++. +. .++... ..+++|+.|++++| .+....|.. +..+++|+.|++++|.....++....
T Consensus 419 ~v~~L~L~~n~-L~g~ip~~i----~~L~~L~~L~Ls~N-~l~g~iP~~-~~~l~~L~~LdLs~N~lsg~iP~~l~---- 487 (623)
T PLN03150 419 FIDGLGLDNQG-LRGFIPNDI----SKLRHLQSINLSGN-SIRGNIPPS-LGSITSLEVLDLSYNSFNGSIPESLG---- 487 (623)
T ss_pred EEEEEECCCCC-ccccCCHHH----hCCCCCCEEECCCC-cccCcCChH-HhCCCCCCEEECCCCCCCCCCchHHh----
Confidence 47788888776 43 323222 46889999999988 565555543 67889999999998765444433211
Q ss_pred ccccCCCCcccCeeccccccccccccccCCceeeccCcceEeeccCCCC
Q 044585 148 EEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDM 196 (352)
Q Consensus 148 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l 196 (352)
.+++|+.|+++++.-...++... ...+.++..+.+.+++.+
T Consensus 488 ------~L~~L~~L~Ls~N~l~g~iP~~l--~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 488 ------QLTSLRILNLNGNSLSGRVPAAL--GGRLLHRASFNFTDNAGL 528 (623)
T ss_pred ------cCCCCCEEECcCCcccccCChHH--hhccccCceEEecCCccc
Confidence 68899999998765333333311 112346677777776543
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.81 E-value=0.0024 Score=52.10 Aligned_cols=63 Identities=16% Similarity=0.170 Sum_probs=35.2
Q ss_pred ccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCC
Q 044585 66 GFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCD 133 (352)
Q Consensus 66 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~ 133 (352)
.+++|..|.++++. ++.+.... - ..+++|..|.+.++ ++.......-+..||.|+.|.+-+++
T Consensus 62 ~l~rL~tLll~nNr-It~I~p~L-~--~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 62 HLPRLHTLLLNNNR-ITRIDPDL-D--TFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTLLGNP 124 (233)
T ss_pred CccccceEEecCCc-ceeeccch-h--hhccccceEEecCc-chhhhhhcchhccCCccceeeecCCc
Confidence 35667777777665 55543332 1 14566777777765 34433322224466777777776654
No 55
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.21 E-value=0.00012 Score=70.06 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=7.9
Q ss_pred eeeccCcceEeeccC
Q 044585 179 IIELSELENLTIENC 193 (352)
Q Consensus 179 ~~~~~~L~~L~l~~c 193 (352)
+..+|.|+.|+++.+
T Consensus 183 Lqll~ale~LnLshN 197 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHN 197 (1096)
T ss_pred HHHHHHhhhhccchh
Confidence 344555555555554
No 56
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=96.04 E-value=0.0018 Score=60.60 Aligned_cols=125 Identities=14% Similarity=0.176 Sum_probs=83.3
Q ss_pred CcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCcceeecccccccccccccccc
Q 044585 184 ELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDE 262 (352)
Q Consensus 184 ~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~ 262 (352)
-|+-|.+++. +++.+ |..+. ..+.|..|+ .++.+..++.. ++.+.+|+.|.+.. +.+.+++.+.
T Consensus 144 pLkvli~sNN-kl~~l-p~~ig-~~~tl~~ld~s~nei~slpsq---------l~~l~slr~l~vrR-n~l~~lp~El-- 208 (722)
T KOG0532|consen 144 PLKVLIVSNN-KLTSL-PEEIG-LLPTLAHLDVSKNEIQSLPSQ---------LGYLTSLRDLNVRR-NHLEDLPEEL-- 208 (722)
T ss_pred cceeEEEecC-ccccC-Ccccc-cchhHHHhhhhhhhhhhchHH---------hhhHHHHHHHHHhh-hhhhhCCHHH--
Confidence 4666666655 56665 66665 677888888 77777776665 35577888888888 6777777652
Q ss_pred cccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCccccccccc-cccCccccccEEEEecc
Q 044585 263 SNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTL-STSRSLIILQSMTIADC 328 (352)
Q Consensus 263 ~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~l~~L~~L~i~~c 328 (352)
..-.|..|++++ .++..+|..+..+..|++|.+.+++ |+.=|.. .+.....-.++|++..|
T Consensus 209 ---~~LpLi~lDfSc-Nkis~iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 209 ---CSLPLIRLDFSC-NKISYLPVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ---hCCceeeeeccc-CceeecchhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence 344577788775 4888899888899999999995554 3332211 11122233567777777
No 57
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.02 E-value=0.00027 Score=60.25 Aligned_cols=104 Identities=17% Similarity=0.207 Sum_probs=68.8
Q ss_pred cCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceec
Q 044585 6 FPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIW 85 (352)
Q Consensus 6 l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~ 85 (352)
+.+.++|+..|| .+.++.- ..+++.|++|.|+-++++.+. .+..+.+|++|+|..+. +..+.
T Consensus 18 l~~vkKLNcwg~-~L~DIsi-c~kMp~lEVLsLSvNkIssL~---------------pl~rCtrLkElYLRkN~-I~sld 79 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDISI-CEKMPLLEVLSLSVNKISSLA---------------PLQRCTRLKELYLRKNC-IESLD 79 (388)
T ss_pred HHHhhhhcccCC-CccHHHH-HHhcccceeEEeeccccccch---------------hHHHHHHHHHHHHHhcc-cccHH
Confidence 567889999999 7776632 357999999999944333322 12346789999998765 44321
Q ss_pred cCCCCCCCCCCCccEEEEecCCCCcccCCc---hhhhcCCCCcEEEE
Q 044585 86 HGQAVPVSFFNNLRQLAVDDCTNMSSAIPT---NLLRCLNNLRCLEV 129 (352)
Q Consensus 86 ~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~---~~~~~l~~L~~L~l 129 (352)
.-. .- .++|+|+.|+|..++......+. .++..+|+|+.|+=
T Consensus 80 EL~-YL-knlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 80 ELE-YL-KNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred HHH-HH-hcCchhhhHhhccCCcccccchhHHHHHHHHcccchhccC
Confidence 110 11 26899999999887665554442 33567888888864
No 58
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.68 E-value=0.0011 Score=53.92 Aligned_cols=37 Identities=22% Similarity=0.304 Sum_probs=16.0
Q ss_pred CcccCeeccccccccccccccCCceeeccCcceEeeccC
Q 044585 155 FPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENC 193 (352)
Q Consensus 155 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c 193 (352)
.++|+.|++++|+.+++.-.. .+..+++|+.|.+++.
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~--~L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLA--CLLKLKNLRRLHLYDL 186 (221)
T ss_pred ccchheeeccCCCeechhHHH--HHHHhhhhHHHHhcCc
Confidence 444455555544444432111 2334455555555443
No 59
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.57 E-value=0.0073 Score=51.23 Aligned_cols=39 Identities=26% Similarity=0.384 Sum_probs=17.9
Q ss_pred CCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCC
Q 044585 94 FFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCD 133 (352)
Q Consensus 94 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~ 133 (352)
.+|+|++|.++++ .+.......-++.+.+|..|++..|.
T Consensus 89 ~~P~l~~l~ls~N-ki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 89 KAPNLKVLNLSGN-KIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred hCCceeEEeecCC-ccccccccchhhhhcchhhhhcccCC
Confidence 3455666655554 23222111223445555555555554
No 60
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.00 E-value=0.00074 Score=57.71 Aligned_cols=80 Identities=25% Similarity=0.275 Sum_probs=46.8
Q ss_pred cCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccc
Q 044585 67 FRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNA 146 (352)
Q Consensus 67 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 146 (352)
+.+.++|++++|. +.++.... .++.|+.|.++-+ .+....+ +..|+.|++|.|+.+. +.++-.+.
T Consensus 18 l~~vkKLNcwg~~-L~DIsic~-----kMp~lEVLsLSvN-kIssL~p---l~rCtrLkElYLRkN~-I~sldEL~---- 82 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-LDDISICE-----KMPLLEVLSLSVN-KISSLAP---LQRCTRLKELYLRKNC-IESLDELE---- 82 (388)
T ss_pred HHHhhhhcccCCC-ccHHHHHH-----hcccceeEEeecc-ccccchh---HHHHHHHHHHHHHhcc-cccHHHHH----
Confidence 4566777777776 66654443 5677777777765 3444433 4477788888777643 33221111
Q ss_pred cccccCCCCcccCeecccc
Q 044585 147 KEEHIGPRFPRLNRLRLID 165 (352)
Q Consensus 147 ~~~~~~~~~~~L~~L~l~~ 165 (352)
++. .+|+|+.|.+..
T Consensus 83 ---YLk-nlpsLr~LWL~E 97 (388)
T KOG2123|consen 83 ---YLK-NLPSLRTLWLDE 97 (388)
T ss_pred ---HHh-cCchhhhHhhcc
Confidence 111 566666666654
No 61
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=94.68 E-value=0.012 Score=55.15 Aligned_cols=60 Identities=17% Similarity=0.215 Sum_probs=27.5
Q ss_pred eeccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCC
Q 044585 64 MIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCD 133 (352)
Q Consensus 64 ~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~ 133 (352)
...+++|++|+++++. ++.+.... .++.|+.|++.++ .+..... +..+++|+.++++++.
T Consensus 114 l~~~~~L~~L~ls~N~-I~~i~~l~-----~l~~L~~L~l~~N-~i~~~~~---~~~l~~L~~l~l~~n~ 173 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNK-ITKLEGLS-----TLTLLKELNLSGN-LISDISG---LESLKSLKLLDLSYNR 173 (414)
T ss_pred hhhhhcchheeccccc-cccccchh-----hccchhhheeccC-cchhccC---CccchhhhcccCCcch
Confidence 3345555555555554 44432222 3444555555554 2333221 2234555555555543
No 62
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=94.64 E-value=0.011 Score=55.31 Aligned_cols=104 Identities=16% Similarity=0.156 Sum_probs=48.3
Q ss_pred ecCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCccee
Q 044585 5 EFPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREI 84 (352)
Q Consensus 5 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~ 84 (352)
.+.+|+.|++.++ ++..+......+++|++|+++++.+.... . +..++.|+.|++.++. ++.+
T Consensus 93 ~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N~I~~i~--------------~-l~~l~~L~~L~l~~N~-i~~~ 155 (414)
T KOG0531|consen 93 KLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFNKITKLE--------------G-LSTLTLLKELNLSGNL-ISDI 155 (414)
T ss_pred cccceeeeecccc-chhhcccchhhhhcchheecccccccccc--------------c-hhhccchhhheeccCc-chhc
Confidence 3555666666555 44444333445666666666633222211 0 1123446666666655 4432
Q ss_pred ccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccC
Q 044585 85 WHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNC 132 (352)
Q Consensus 85 ~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~ 132 (352)
..- ..+++|+.+.+.++ .+....... ...+.+|+.+.+.++
T Consensus 156 ~~~-----~~l~~L~~l~l~~n-~i~~ie~~~-~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 156 SGL-----ESLKSLKLLDLSYN-RIVDIENDE-LSELISLEELDLGGN 196 (414)
T ss_pred cCC-----ccchhhhcccCCcc-hhhhhhhhh-hhhccchHHHhccCC
Confidence 111 12555666666655 233322200 234555666666553
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.60 E-value=0.015 Score=49.36 Aligned_cols=38 Identities=21% Similarity=0.199 Sum_probs=17.4
Q ss_pred CCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccC
Q 044585 95 FNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNC 132 (352)
Q Consensus 95 l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~ 132 (352)
+++|++|.++++..-........+..+|+|++|.++++
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N 101 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN 101 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCC
Confidence 55666666655411111111122345566666666654
No 64
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=94.20 E-value=0.0016 Score=62.73 Aligned_cols=33 Identities=21% Similarity=0.490 Sum_probs=22.5
Q ss_pred cCCccEEeccccccceEeccCCCCCCCceEEEecc
Q 044585 6 FPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTE 40 (352)
Q Consensus 6 l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 40 (352)
+|.|+.|+|++| +++... .+..+++|+.|||+.
T Consensus 186 l~ale~LnLshN-k~~~v~-~Lr~l~~LkhLDlsy 218 (1096)
T KOG1859|consen 186 LPALESLNLSHN-KFTKVD-NLRRLPKLKHLDLSY 218 (1096)
T ss_pred HHHhhhhccchh-hhhhhH-HHHhccccccccccc
Confidence 467778888887 555443 345688888888884
No 65
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.15 E-value=0.038 Score=27.90 Aligned_cols=21 Identities=19% Similarity=0.384 Sum_probs=16.2
Q ss_pred CccEEeccccccceEeccCCCC
Q 044585 8 SLEQVSMTHCPNMKTFSRGISS 29 (352)
Q Consensus 8 ~L~~L~l~~~~~l~~l~~~~~~ 29 (352)
+|++|++++| .++.+|+.|++
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT
T ss_pred CccEEECCCC-cCEeCChhhcC
Confidence 5788899988 78888877543
No 66
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.32 E-value=0.019 Score=47.00 Aligned_cols=88 Identities=16% Similarity=0.197 Sum_probs=62.4
Q ss_pred CcceeecccccccccccccccccccccCCcceEEEecCCCccccc--CCccCCCCCcEEeecCCccccccccccccCccc
Q 044585 241 QLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLV--PASWHLENLEALKVSKCHRLINLLTLSTSRSLI 318 (352)
Q Consensus 241 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~ 318 (352)
.++.++-+++ .+....-+.+ ..+++++.|.+.+|..+...- .--+..++|+.|+|++|+++++-.. .....++
T Consensus 102 ~IeaVDAsds-~I~~eGle~L---~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL-~~L~~lk 176 (221)
T KOG3864|consen 102 KIEAVDASDS-SIMYEGLEHL---RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL-ACLLKLK 176 (221)
T ss_pred eEEEEecCCc-hHHHHHHHHH---hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH-HHHHHhh
Confidence 5677777774 3333333344 578899999999997655321 0113678999999999999999854 3456788
Q ss_pred cccEEEEecccccce
Q 044585 319 ILQSMTIADCKRIEE 333 (352)
Q Consensus 319 ~L~~L~i~~c~~l~~ 333 (352)
+|+.|.+++.+.+.+
T Consensus 177 nLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 177 NLRRLHLYDLPYVAN 191 (221)
T ss_pred hhHHHHhcCchhhhc
Confidence 999999999876543
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.24 E-value=0.44 Score=36.18 Aligned_cols=32 Identities=16% Similarity=0.284 Sum_probs=12.4
Q ss_pred CCcceeecccccccccccccccccccccCCcceEEEe
Q 044585 240 PQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIF 276 (352)
Q Consensus 240 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~ 276 (352)
++++.+.+.+ .+..+....+ ..++.|+.+.+.
T Consensus 58 ~~l~~i~~~~--~~~~i~~~~F---~~~~~l~~i~~~ 89 (129)
T PF13306_consen 58 KSLESITFPN--NLKSIGDNAF---SNCTNLKNIDIP 89 (129)
T ss_dssp TT-EEEEETS--TT-EE-TTTT---TT-TTECEEEET
T ss_pred cccccccccc--cccccccccc---cccccccccccC
Confidence 3455555533 3333333333 334555555553
No 68
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.09 E-value=0.081 Score=24.79 Aligned_cols=16 Identities=13% Similarity=0.534 Sum_probs=7.9
Q ss_pred CCccEEeccccccceEe
Q 044585 7 PSLEQVSMTHCPNMKTF 23 (352)
Q Consensus 7 ~~L~~L~l~~~~~l~~l 23 (352)
++|+.|+|.+| +++.+
T Consensus 1 ~~L~~L~l~~n-~L~~l 16 (17)
T PF13504_consen 1 PNLRTLDLSNN-RLTSL 16 (17)
T ss_dssp TT-SEEEETSS---SSE
T ss_pred CccCEEECCCC-CCCCC
Confidence 45666666666 35544
No 69
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=91.10 E-value=0.41 Score=39.42 Aligned_cols=87 Identities=21% Similarity=0.190 Sum_probs=59.7
Q ss_pred ccccCCcceeecccccccccccccccccccccCCcceEEEecCCCccccc--CCccCCCCCcEEeecCCccccccc--cc
Q 044585 236 KLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLV--PASWHLENLEALKVSKCHRLINLL--TL 311 (352)
Q Consensus 236 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~~~~~~~~L~~L~l~~c~~l~~~~--~~ 311 (352)
+..+++|.+|.+.+ +.++.+..... ..+|.|++|.+.++. +..+. ..+..+|.|+.|.+-+++- +... ..
T Consensus 60 lp~l~rL~tLll~n-NrIt~I~p~L~---~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Ltll~Npv-~~k~~YR~ 133 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNN-NRITRIDPDLD---TFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLTLLGNPV-EHKKNYRL 133 (233)
T ss_pred CCCccccceEEecC-Ccceeeccchh---hhccccceEEecCcc-hhhhhhcchhccCCccceeeecCCch-hcccCcee
Confidence 34567899999988 67787765544 578899999999863 44332 2456788999999966542 2221 12
Q ss_pred cccCccccccEEEEecc
Q 044585 312 STSRSLIILQSMTIADC 328 (352)
Q Consensus 312 ~~~~~l~~L~~L~i~~c 328 (352)
.+...+|+|+.|+..+=
T Consensus 134 yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 134 YVLYKLPSLRTLDFQKV 150 (233)
T ss_pred EEEEecCcceEeehhhh
Confidence 35566788898888763
No 70
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=90.39 E-value=0.046 Score=42.05 Aligned_cols=83 Identities=16% Similarity=0.167 Sum_probs=51.2
Q ss_pred CCCCCceEEEecccccCcceeecCccchhhhhhceeee-ccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecC
Q 044585 28 SSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMI-GFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDC 106 (352)
Q Consensus 28 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c 106 (352)
..-.+|...+++ +..++++|..+. .+|.++.|++.++. ++++|... ..++.|+.|+++.+
T Consensus 50 ~~~~el~~i~ls--------------~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~----Aam~aLr~lNl~~N 110 (177)
T KOG4579|consen 50 SKGYELTKISLS--------------DNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEEL----AAMPALRSLNLRFN 110 (177)
T ss_pred hCCceEEEEecc--------------cchhhhCCHHHhhccchhhhhhcchhh-hhhchHHH----hhhHHhhhcccccC
Confidence 456677777887 345555665543 56678888888776 77766653 34778888888876
Q ss_pred CCCcccCCchhhhcCCCCcEEEEccC
Q 044585 107 TNMSSAIPTNLLRCLNNLRCLEVRNC 132 (352)
Q Consensus 107 ~~l~~~~~~~~~~~l~~L~~L~l~~~ 132 (352)
+- .. .|..+++ +.+|-.|+..++
T Consensus 111 ~l-~~-~p~vi~~-L~~l~~Lds~~n 133 (177)
T KOG4579|consen 111 PL-NA-EPRVIAP-LIKLDMLDSPEN 133 (177)
T ss_pred cc-cc-chHHHHH-HHhHHHhcCCCC
Confidence 42 22 2333233 666666666554
No 71
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=89.36 E-value=0.14 Score=26.90 Aligned_cols=17 Identities=29% Similarity=0.554 Sum_probs=10.6
Q ss_pred CCCcEEeecCCcccccc
Q 044585 292 ENLEALKVSKCHRLINL 308 (352)
Q Consensus 292 ~~L~~L~l~~c~~l~~~ 308 (352)
++|++|++++|+++++.
T Consensus 2 ~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 2 PNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCEeCCCCCCCcCHH
Confidence 55666666666666654
No 72
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=85.79 E-value=0.11 Score=39.96 Aligned_cols=57 Identities=23% Similarity=0.256 Sum_probs=35.2
Q ss_pred ccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeec
Q 044585 238 TFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVS 300 (352)
Q Consensus 238 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~ 300 (352)
.+|.++.|++++ +++.++|.+ + +.++.|+.|+++.++ +...|.-+..+.+|..|+..
T Consensus 75 kf~t~t~lNl~~-neisdvPeE-~---Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 75 KFPTATTLNLAN-NEISDVPEE-L---AAMPALRSLNLRFNP-LNAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred ccchhhhhhcch-hhhhhchHH-H---hhhHHhhhcccccCc-cccchHHHHHHHhHHHhcCC
Confidence 356777777777 677777766 4 577777777777763 44444333334555555553
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=84.79 E-value=4.1 Score=30.70 Aligned_cols=106 Identities=12% Similarity=0.125 Sum_probs=51.2
Q ss_pred chhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCcceeecccccccccccccccccccccCCcceEEEecCCC
Q 044585 202 NSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSK 280 (352)
Q Consensus 202 ~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~ 280 (352)
...+.++.+|+.+. . ..++.+.... +..+++|+.+.+.+ .+..+....+ ..+++|+.+.+.+ .
T Consensus 5 ~~~F~~~~~l~~i~~~-~~~~~I~~~~--------F~~~~~l~~i~~~~--~~~~i~~~~F---~~~~~l~~i~~~~--~ 68 (129)
T PF13306_consen 5 NNAFYNCSNLESITFP-NTIKKIGENA--------FSNCTSLKSINFPN--NLTSIGDNAF---SNCKSLESITFPN--N 68 (129)
T ss_dssp TTTTTT-TT--EEEET-ST--EE-TTT--------TTT-TT-SEEEESS--TTSCE-TTTT---TT-TT-EEEEETS--T
T ss_pred HHHHhCCCCCCEEEEC-CCeeEeChhh--------cccccccccccccc--cccccceeee---ecccccccccccc--c
Confidence 34444666677665 2 1233222221 34566788888876 3777776666 5666788888865 3
Q ss_pred cccccC-CccCCCCCcEEeecCCccccccccccccCccccccEEEEec
Q 044585 281 LQKLVP-ASWHLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIAD 327 (352)
Q Consensus 281 l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~ 327 (352)
+..++. .+..+++|+.+.+.. +++.+.. ..+..+ +|+.+.+.+
T Consensus 69 ~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~-~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 69 LKSIGDNAFSNCTNLKNIDIPS--NITEIGS-SSFSNC-NLKEINIPS 112 (129)
T ss_dssp T-EE-TTTTTT-TTECEEEETT--T-BEEHT-TTTTT--T--EEE-TT
T ss_pred ccccccccccccccccccccCc--cccEEch-hhhcCC-CceEEEECC
Confidence 444443 345578888888843 3555533 345555 777777654
No 74
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=82.99 E-value=1.2 Score=38.48 Aligned_cols=148 Identities=18% Similarity=0.164 Sum_probs=68.5
Q ss_pred CCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceeccCCCCCC-----------CCCC
Q 044585 28 SSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWHGQAVPV-----------SFFN 96 (352)
Q Consensus 28 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~-----------~~l~ 96 (352)
.+||+|+..+++.+-+.. ...+.+-..++....|++|.+++|. +..+..+. +.. ..-|
T Consensus 89 lkcp~l~~v~LSDNAfg~---------~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~r-igkal~~la~nKKaa~kp 157 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGS---------EFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGR-IGKALFHLAYNKKAADKP 157 (388)
T ss_pred hcCCcceeeeccccccCc---------ccchHHHHHHhcCCCceeEEeecCC-CCccchhH-HHHHHHHHHHHhhhccCC
Confidence 457777777777421110 0111122334456677777777665 54432221 210 1235
Q ss_pred CccEEEEecCCCCcccCC---chhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccccccc--c
Q 044585 97 NLRQLAVDDCTNMSSAIP---TNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLK--R 171 (352)
Q Consensus 97 ~L~~L~l~~c~~l~~~~~---~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~ 171 (352)
.|+......+ .+.+.+. ...++.-..|+++.+.++. +..- ....+. +... . .+.+|+.|++.+..... .
T Consensus 158 ~Le~vicgrN-Rlengs~~~~a~~l~sh~~lk~vki~qNg-Irpe-gv~~L~-~~gl-~-y~~~LevLDlqDNtft~~gS 231 (388)
T COG5238 158 KLEVVICGRN-RLENGSKELSAALLESHENLKEVKIQQNG-IRPE-GVTMLA-FLGL-F-YSHSLEVLDLQDNTFTLEGS 231 (388)
T ss_pred CceEEEeccc-hhccCcHHHHHHHHHhhcCceeEEeeecC-cCcc-hhHHHH-HHHH-H-HhCcceeeeccccchhhhhH
Confidence 5666655544 2333221 1112333567777777643 2211 000000 0000 0 35577777776543211 1
Q ss_pred ccccCCceeeccCcceEeeccC
Q 044585 172 FCNFTGNIIELSELENLTIENC 193 (352)
Q Consensus 172 ~~~~~~~~~~~~~L~~L~l~~c 193 (352)
..... ....++.|++|.+.+|
T Consensus 232 ~~La~-al~~W~~lrEL~lnDC 252 (388)
T COG5238 232 RYLAD-ALCEWNLLRELRLNDC 252 (388)
T ss_pred HHHHH-Hhcccchhhhccccch
Confidence 00111 3455678899999888
No 75
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=81.33 E-value=0.92 Score=23.64 Aligned_cols=21 Identities=14% Similarity=0.556 Sum_probs=14.7
Q ss_pred cCCccEEeccccccceEeccCC
Q 044585 6 FPSLEQVSMTHCPNMKTFSRGI 27 (352)
Q Consensus 6 l~~L~~L~l~~~~~l~~l~~~~ 27 (352)
+++|++|++.+| .++.+|...
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNN-QLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHHH
Confidence 467788888877 677776543
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=81.33 E-value=0.92 Score=23.64 Aligned_cols=21 Identities=14% Similarity=0.556 Sum_probs=14.7
Q ss_pred cCCccEEeccccccceEeccCC
Q 044585 6 FPSLEQVSMTHCPNMKTFSRGI 27 (352)
Q Consensus 6 l~~L~~L~l~~~~~l~~l~~~~ 27 (352)
+++|++|++.+| .++.+|...
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNN-QLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHHH
Confidence 467788888877 677776543
No 77
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=72.32 E-value=2.4 Score=36.77 Aligned_cols=173 Identities=12% Similarity=0.155 Sum_probs=92.1
Q ss_pred cCCccEEeccccccce-----EeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCC
Q 044585 6 FPSLEQVSMTHCPNMK-----TFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPR 80 (352)
Q Consensus 6 l~~L~~L~l~~~~~l~-----~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 80 (352)
+..+..++++|| .+. .+...+.+.++|++.+++.-. .+. ..++...++.-+.....++|+|+..+++++.
T Consensus 29 ~d~~~evdLSGN-tigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr--~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA- 103 (388)
T COG5238 29 MDELVEVDLSGN-TIGTEAMEELCNVIANVRNLRVVNFSDAF-TGR--DKDELYSNLVMLLKALLKCPRLQKVDLSDNA- 103 (388)
T ss_pred hcceeEEeccCC-cccHHHHHHHHHHHhhhcceeEeehhhhh-hcc--cHHHHHHHHHHHHHHHhcCCcceeeeccccc-
Confidence 456788899998 433 334455679999999999420 000 0000111222233445689999999999876
Q ss_pred cce-ecc--CCCCCCCCCCCccEEEEecCCCCcccCCchh------------hhcCCCCcEEEEccCCCcceeeeecccc
Q 044585 81 LRE-IWH--GQAVPVSFFNNLRQLAVDDCTNMSSAIPTNL------------LRCLNNLRCLEVRNCDLIEEVLHLEELN 145 (352)
Q Consensus 81 l~~-~~~--~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~------------~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 145 (352)
+.. .+. +. +. ..-+.|++|.+++| .+....-..+ +..-|.|+.+....+. ++.-+ ..
T Consensus 104 fg~~~~e~L~d-~i-s~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR-lengs----~~ 175 (388)
T COG5238 104 FGSEFPEELGD-LI-SSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR-LENGS----KE 175 (388)
T ss_pred cCcccchHHHH-HH-hcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch-hccCc----HH
Confidence 321 110 11 11 24578999999998 4543321111 1234677777776644 22211 11
Q ss_pred ccccccCCCCcccCeeccccccc----cccccccCCceeeccCcceEeeccCC
Q 044585 146 AKEEHIGPRFPRLNRLRLIDLPK----LKRFCNFTGNIIELSELENLTIENCP 194 (352)
Q Consensus 146 ~~~~~~~~~~~~L~~L~l~~~~~----l~~~~~~~~~~~~~~~L~~L~l~~c~ 194 (352)
.|...+. ...+|+.+.+....- +.-+... ...-+.+|+.|+++++.
T Consensus 176 ~~a~~l~-sh~~lk~vki~qNgIrpegv~~L~~~--gl~y~~~LevLDlqDNt 225 (388)
T COG5238 176 LSAALLE-SHENLKEVKIQQNGIRPEGVTMLAFL--GLFYSHSLEVLDLQDNT 225 (388)
T ss_pred HHHHHHH-hhcCceeEEeeecCcCcchhHHHHHH--HHHHhCcceeeeccccc
Confidence 1222222 335788877754321 0100000 23456799999998863
No 78
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=51.80 E-value=8.8 Score=20.20 Aligned_cols=18 Identities=17% Similarity=0.552 Sum_probs=13.1
Q ss_pred CCccEEeccccccceEecc
Q 044585 7 PSLEQVSMTHCPNMKTFSR 25 (352)
Q Consensus 7 ~~L~~L~l~~~~~l~~l~~ 25 (352)
++|++|++++| .++++|.
T Consensus 2 ~~L~~L~vs~N-~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNN-QLTSLPE 19 (26)
T ss_pred cccceeecCCC-ccccCcc
Confidence 46788888887 6777664
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=51.74 E-value=10 Score=19.04 Aligned_cols=11 Identities=27% Similarity=0.670 Sum_probs=4.9
Q ss_pred CCccEEecccc
Q 044585 7 PSLEQVSMTHC 17 (352)
Q Consensus 7 ~~L~~L~l~~~ 17 (352)
++|++|+|.+|
T Consensus 2 ~~L~~L~l~~n 12 (24)
T PF13516_consen 2 PNLETLDLSNN 12 (24)
T ss_dssp TT-SEEE-TSS
T ss_pred CCCCEEEccCC
Confidence 45555555555
No 80
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=34.56 E-value=36 Score=17.85 Aligned_cols=11 Identities=18% Similarity=0.495 Sum_probs=6.4
Q ss_pred CCccEEecccc
Q 044585 7 PSLEQVSMTHC 17 (352)
Q Consensus 7 ~~L~~L~l~~~ 17 (352)
.+|+.|++.+|
T Consensus 2 ~~L~~L~L~~N 12 (26)
T smart00365 2 TNLEELDLSQN 12 (26)
T ss_pred CccCEEECCCC
Confidence 45666666655
No 81
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=29.01 E-value=14 Score=35.34 Aligned_cols=39 Identities=21% Similarity=0.227 Sum_probs=17.2
Q ss_pred ccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecC
Q 044585 66 GFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDC 106 (352)
Q Consensus 66 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c 106 (352)
++|.+..++|+++. +..+..-..+. ...|+|+.|+|+++
T Consensus 216 n~p~i~sl~lsnNr-L~~Ld~~ssls-q~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNR-LYHLDALSSLS-QIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccch-hhchhhhhHHH-Hhcchhheeecccc
Confidence 45555555555544 32211111011 13456666666654
No 82
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=21.50 E-value=35 Score=32.82 Aligned_cols=39 Identities=13% Similarity=0.227 Sum_probs=20.6
Q ss_pred CCCCCccEEEEecCCCCcccCC-chhhhcCCCCcEEEEccC
Q 044585 93 SFFNNLRQLAVDDCTNMSSAIP-TNLLRCLNNLRCLEVRNC 132 (352)
Q Consensus 93 ~~l~~L~~L~l~~c~~l~~~~~-~~~~~~l~~L~~L~l~~~ 132 (352)
.+++.+.++.++++ .+..... .++....|+|+.|+|+++
T Consensus 215 ~n~p~i~sl~lsnN-rL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 215 ENFPEILSLSLSNN-RLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cCCcceeeeecccc-hhhchhhhhHHHHhcchhheeecccc
Confidence 35566666666665 2332221 222345566777777665
No 83
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=21.06 E-value=65 Score=16.93 Aligned_cols=10 Identities=20% Similarity=0.478 Sum_probs=5.1
Q ss_pred CccEEecccc
Q 044585 8 SLEQVSMTHC 17 (352)
Q Consensus 8 ~L~~L~l~~~ 17 (352)
+|++|+|.+|
T Consensus 3 ~L~~LdL~~N 12 (28)
T smart00368 3 SLRELDLSNN 12 (28)
T ss_pred ccCEEECCCC
Confidence 4555555554
Done!