Query 044585
Match_columns 352
No_of_seqs 150 out of 1281
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 07:54:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044585.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044585hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2id5_A Lingo-1, leucine rich r 99.9 6E-21 2E-25 180.3 19.5 286 7-329 32-331 (477)
2 3v47_A TOLL-like receptor 5B a 99.9 6.5E-21 2.2E-25 178.9 16.7 300 7-329 30-406 (455)
3 4fmz_A Internalin; leucine ric 99.8 3.5E-20 1.2E-24 167.7 17.9 272 5-334 42-326 (347)
4 4fmz_A Internalin; leucine ric 99.8 2.2E-20 7.5E-25 169.1 16.3 273 4-329 63-344 (347)
5 3t6q_A CD180 antigen; protein- 99.8 8.4E-20 2.9E-24 177.5 17.9 236 64-329 321-558 (606)
6 3o6n_A APL1; leucine-rich repe 99.8 1.8E-19 6.2E-24 165.7 18.8 124 183-329 226-350 (390)
7 3rgz_A Protein brassinosteroid 99.8 1.3E-19 4.5E-24 180.7 19.0 95 236-336 628-722 (768)
8 3rgz_A Protein brassinosteroid 99.8 4.4E-20 1.5E-24 184.2 14.4 294 5-334 245-554 (768)
9 3vq2_A TLR4, TOLL-like recepto 99.8 1.6E-19 5.3E-24 175.6 17.8 271 5-329 283-556 (606)
10 4eco_A Uncharacterized protein 99.8 3.1E-20 1.1E-24 181.4 12.5 274 4-329 203-547 (636)
11 4ecn_A Leucine-rich repeat pro 99.8 2E-19 6.8E-24 179.7 18.2 294 5-329 489-838 (876)
12 1xku_A Decorin; proteoglycan, 99.8 6.6E-19 2.2E-23 158.3 19.6 267 8-330 32-305 (330)
13 3v47_A TOLL-like receptor 5B a 99.8 1.7E-19 6E-24 169.2 16.4 87 236-329 295-382 (455)
14 3t6q_A CD180 antigen; protein- 99.8 3.3E-19 1.1E-23 173.3 18.9 275 8-330 255-535 (606)
15 4fcg_A Uncharacterized protein 99.8 1.1E-19 3.9E-24 163.1 14.5 230 30-326 80-309 (328)
16 2id5_A Lingo-1, leucine rich r 99.8 2.5E-19 8.6E-24 169.2 17.4 268 10-328 14-306 (477)
17 2ft3_A Biglycan; proteoglycan, 99.8 1.1E-18 3.6E-23 157.1 20.5 244 8-308 34-279 (332)
18 4eco_A Uncharacterized protein 99.8 1.3E-19 4.3E-24 177.1 15.4 295 5-330 247-599 (636)
19 4fcg_A Uncharacterized protein 99.8 5.1E-19 1.8E-23 158.9 18.1 212 66-337 79-296 (328)
20 3o6n_A APL1; leucine-rich repe 99.8 5.5E-19 1.9E-23 162.5 18.5 260 5-329 67-329 (390)
21 3oja_B Anopheles plasmodium-re 99.8 9.1E-19 3.1E-23 169.9 19.0 262 6-329 74-356 (597)
22 3j0a_A TOLL-like receptor 5; m 99.8 2.5E-18 8.4E-23 173.3 22.7 69 61-133 90-159 (844)
23 1o6v_A Internalin A; bacterial 99.8 9.4E-19 3.2E-23 164.8 18.2 80 237-328 262-341 (466)
24 4ecn_A Leucine-rich repeat pro 99.8 2.1E-19 7.1E-24 179.6 13.6 279 4-329 445-787 (876)
25 3oja_B Anopheles plasmodium-re 99.8 1.2E-18 4.2E-23 168.9 18.1 253 3-304 95-357 (597)
26 3vq2_A TLR4, TOLL-like recepto 99.8 1.9E-18 6.6E-23 167.9 19.0 87 237-329 421-508 (606)
27 1xku_A Decorin; proteoglycan, 99.8 2.9E-18 9.9E-23 154.1 18.6 269 6-328 51-329 (330)
28 3bz5_A Internalin-J, INLJ; leu 99.8 9.6E-19 3.3E-23 164.0 16.0 141 5-193 40-180 (457)
29 1o6v_A Internalin A; bacterial 99.8 1.9E-18 6.4E-23 162.7 18.0 269 5-330 66-365 (466)
30 2ft3_A Biglycan; proteoglycan, 99.8 3.2E-18 1.1E-22 153.9 18.8 269 6-329 53-331 (332)
31 2z80_A TOLL-like receptor 2, v 99.8 3.1E-19 1.1E-23 162.0 11.8 279 5-330 29-313 (353)
32 1ziw_A TOLL-like receptor 3; i 99.8 3.4E-18 1.2E-22 168.4 20.1 236 68-329 381-620 (680)
33 3bz5_A Internalin-J, INLJ; leu 99.8 1.2E-18 4E-23 163.5 15.8 263 4-328 61-349 (457)
34 1ogq_A PGIP-2, polygalacturona 99.8 3.7E-19 1.3E-23 158.8 11.5 234 60-331 68-304 (313)
35 2z81_A CD282 antigen, TOLL-lik 99.8 2.2E-18 7.4E-23 165.6 17.1 107 184-303 311-421 (549)
36 2z7x_B TOLL-like receptor 1, v 99.8 3.5E-18 1.2E-22 163.0 18.2 83 238-329 397-479 (520)
37 2z7x_B TOLL-like receptor 1, v 99.8 1.1E-17 3.7E-22 159.7 18.4 89 237-335 371-460 (520)
38 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.1E-17 3.7E-22 161.2 18.3 59 268-329 450-508 (562)
39 2z63_A TOLL-like receptor 4, v 99.8 7E-18 2.4E-22 162.6 16.7 266 10-329 260-529 (570)
40 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.3E-17 4.3E-22 160.7 17.7 138 180-335 350-489 (562)
41 2z81_A CD282 antigen, TOLL-lik 99.7 3.9E-18 1.3E-22 163.8 11.9 112 7-137 26-138 (549)
42 2z66_A Variable lymphocyte rec 99.7 1.2E-17 4.2E-22 148.4 14.2 243 11-304 11-260 (306)
43 1ziw_A TOLL-like receptor 3; i 99.7 5.6E-17 1.9E-21 159.7 20.0 134 181-328 452-594 (680)
44 1ogq_A PGIP-2, polygalacturona 99.7 5.6E-18 1.9E-22 151.1 11.0 251 7-308 50-307 (313)
45 2z80_A TOLL-like receptor 2, v 99.7 4.9E-18 1.7E-22 154.1 9.7 257 7-307 52-316 (353)
46 3zyj_A Leucine-rich repeat-con 99.7 6.4E-17 2.2E-21 151.1 17.1 205 64-303 84-290 (440)
47 3j0a_A TOLL-like receptor 5; m 99.7 1.1E-16 3.8E-21 161.2 20.0 276 6-329 23-373 (844)
48 3g06_A SSPH2 (leucine-rich rep 99.7 1.5E-16 5E-21 154.0 19.8 242 8-331 41-297 (622)
49 3zyi_A Leucine-rich repeat-con 99.7 1.1E-16 3.8E-21 150.0 18.0 242 10-303 57-301 (452)
50 3zyi_A Leucine-rich repeat-con 99.7 8.9E-17 3E-21 150.7 17.1 237 54-329 63-301 (452)
51 3zyj_A Leucine-rich repeat-con 99.7 1.3E-16 4.6E-21 148.9 17.9 237 54-329 52-290 (440)
52 2z63_A TOLL-like receptor 4, v 99.7 1.3E-16 4.3E-21 153.9 17.9 250 5-307 280-533 (570)
53 3o53_A Protein LRIM1, AGAP0063 99.7 1.8E-18 6.1E-23 154.6 4.4 244 28-332 31-276 (317)
54 3ogk_B Coronatine-insensitive 99.7 6.1E-19 2.1E-23 170.9 1.0 290 5-329 190-524 (592)
55 3o53_A Protein LRIM1, AGAP0063 99.7 4.4E-18 1.5E-22 152.1 2.1 271 6-338 33-306 (317)
56 2z66_A Variable lymphocyte rec 99.7 8.3E-16 2.8E-20 136.5 16.5 238 55-329 17-259 (306)
57 1ozn_A Reticulon 4 receptor; N 99.7 5.4E-17 1.8E-21 142.7 8.4 222 10-304 14-237 (285)
58 1ozn_A Reticulon 4 receptor; N 99.7 7.1E-16 2.4E-20 135.5 15.2 88 236-330 149-237 (285)
59 4g8a_A TOLL-like receptor 4; l 99.7 2.6E-15 8.8E-20 146.3 20.6 120 8-133 53-184 (635)
60 3ogk_B Coronatine-insensitive 99.7 2.9E-17 9.9E-22 159.1 5.7 289 5-329 162-499 (592)
61 2p1m_B Transport inhibitor res 99.7 1.5E-17 5.3E-22 161.0 2.4 62 267-330 455-518 (594)
62 1wwl_A Monocyte differentiatio 99.7 3.7E-17 1.3E-21 145.7 4.2 81 238-329 226-307 (312)
63 2p1m_B Transport inhibitor res 99.6 4E-18 1.4E-22 165.2 -2.8 133 181-327 395-540 (594)
64 2ast_B S-phase kinase-associat 99.6 8.9E-17 3E-21 144.6 6.2 213 64-310 89-310 (336)
65 1jl5_A Outer protein YOPM; leu 99.6 4.7E-15 1.6E-19 138.8 17.9 79 240-331 317-409 (454)
66 3oja_A Leucine-rich immune mol 99.6 1.3E-15 4.6E-20 143.8 13.8 237 29-326 32-270 (487)
67 2ast_B S-phase kinase-associat 99.6 1.1E-16 3.8E-21 144.0 5.9 237 68-337 70-311 (336)
68 3oja_A Leucine-rich immune mol 99.6 7.9E-16 2.7E-20 145.4 11.7 218 66-331 32-250 (487)
69 1jl5_A Outer protein YOPM; leu 99.6 1.3E-15 4.5E-20 142.6 11.7 250 4-328 8-287 (454)
70 1p9a_G Platelet glycoprotein I 99.6 7.9E-15 2.7E-19 129.2 15.9 199 65-303 7-206 (290)
71 4ay9_X Follicle-stimulating ho 99.6 8E-15 2.7E-19 132.7 16.1 239 10-300 12-254 (350)
72 2xwt_C Thyrotropin receptor; s 99.6 1E-14 3.5E-19 124.7 15.1 201 69-330 32-238 (239)
73 3g06_A SSPH2 (leucine-rich rep 99.6 1.3E-14 4.5E-19 140.3 17.3 227 7-304 61-296 (622)
74 2xwt_C Thyrotropin receptor; s 99.6 1.2E-14 4.2E-19 124.2 14.0 186 95-334 30-220 (239)
75 4ay9_X Follicle-stimulating ho 99.6 1.8E-14 6.3E-19 130.3 14.5 234 56-326 20-254 (350)
76 1wwl_A Monocyte differentiatio 99.6 7.9E-16 2.7E-20 137.1 3.3 249 5-303 41-307 (312)
77 1h6u_A Internalin H; cell adhe 99.5 2.3E-14 7.9E-19 127.3 11.3 144 6-193 40-183 (308)
78 2o6q_A Variable lymphocyte rec 99.5 1.2E-13 4.3E-18 120.2 14.8 62 237-303 154-216 (270)
79 2z62_A TOLL-like receptor 4, v 99.5 1.3E-13 4.5E-18 120.4 14.2 211 19-302 18-234 (276)
80 1z7x_W Ribonuclease inhibitor; 99.5 1E-15 3.6E-20 143.6 0.6 125 5-133 26-181 (461)
81 2z62_A TOLL-like receptor 4, v 99.5 8.7E-14 3E-18 121.5 12.8 212 56-327 18-233 (276)
82 1h6u_A Internalin H; cell adhe 99.5 1E-13 3.4E-18 123.2 12.4 103 64-193 59-161 (308)
83 2o6q_A Variable lymphocyte rec 99.5 2.1E-13 7.3E-18 118.7 13.6 199 8-279 17-216 (270)
84 1z7x_W Ribonuclease inhibitor; 99.5 2.1E-16 7.3E-21 148.3 -6.6 114 6-133 2-124 (461)
85 2ca6_A RAN GTPase-activating p 99.5 2.7E-15 9.3E-20 137.6 -0.3 277 21-327 22-339 (386)
86 1p9a_G Platelet glycoprotein I 99.5 5.2E-13 1.8E-17 117.5 13.4 178 4-221 7-185 (290)
87 4g8a_A TOLL-like receptor 4; l 99.5 2.1E-12 7.2E-17 125.6 18.3 205 94-328 369-577 (635)
88 4glp_A Monocyte differentiatio 99.5 5.9E-13 2E-17 118.3 12.8 210 96-329 91-305 (310)
89 3rfs_A Internalin B, repeat mo 99.4 1.9E-13 6.6E-18 119.1 8.9 56 237-303 178-233 (272)
90 4glp_A Monocyte differentiatio 99.4 3.7E-13 1.2E-17 119.7 10.2 209 66-303 89-305 (310)
91 3rfs_A Internalin B, repeat mo 99.4 1.4E-12 4.7E-17 113.7 12.9 177 94-304 39-217 (272)
92 2ca6_A RAN GTPase-activating p 99.4 1.1E-13 3.8E-18 126.9 2.8 254 54-329 18-314 (386)
93 4ezg_A Putative uncharacterize 99.4 1.7E-12 5.8E-17 107.4 8.8 149 6-193 43-191 (197)
94 3m19_A Variable lymphocyte rec 99.3 1.3E-11 4.3E-16 106.2 12.0 60 239-303 130-190 (251)
95 1h6t_A Internalin B; cell adhe 99.3 6.4E-12 2.2E-16 110.6 10.1 144 65-249 65-209 (291)
96 4ezg_A Putative uncharacterize 99.3 2.4E-11 8.1E-16 100.5 12.2 57 239-302 135-191 (197)
97 1m9s_A Internalin B; cell inva 99.3 1.4E-11 4.8E-16 118.9 11.6 100 6-132 42-141 (605)
98 3m19_A Variable lymphocyte rec 99.3 2.7E-11 9.2E-16 104.1 12.2 86 237-329 104-190 (251)
99 3goz_A Leucine-rich repeat-con 99.3 9E-13 3.1E-17 119.7 2.4 265 13-303 4-295 (362)
100 1h6t_A Internalin B; cell adhe 99.3 3E-11 1E-15 106.2 11.5 101 66-193 44-144 (291)
101 1m9s_A Internalin B; cell inva 99.2 5.9E-11 2E-15 114.6 12.5 101 66-193 41-141 (605)
102 3cvr_A Invasion plasmid antige 99.2 1.7E-10 5.7E-15 110.4 14.6 33 242-279 209-241 (571)
103 1xeu_A Internalin C; cellular 99.2 4.6E-11 1.6E-15 103.4 9.1 144 5-193 39-182 (263)
104 3goz_A Leucine-rich repeat-con 99.2 4.3E-12 1.5E-16 115.2 2.5 244 7-279 22-295 (362)
105 2o6s_A Variable lymphocyte rec 99.1 1.3E-10 4.5E-15 96.8 8.1 147 11-193 11-158 (208)
106 2ell_A Acidic leucine-rich nuc 99.1 5.5E-11 1.9E-15 95.6 5.0 135 30-194 23-158 (168)
107 3cvr_A Invasion plasmid antige 99.1 1.5E-09 5.2E-14 103.8 14.3 177 69-306 60-244 (571)
108 2o6s_A Variable lymphocyte rec 99.1 3.5E-10 1.2E-14 94.1 8.8 13 181-193 98-110 (208)
109 3sb4_A Hypothetical leucine ri 99.1 1.3E-09 4.5E-14 97.4 12.5 39 5-44 23-62 (329)
110 2je0_A Acidic leucine-rich nuc 99.1 6.9E-11 2.4E-15 93.0 3.5 105 6-132 16-123 (149)
111 3e6j_A Variable lymphocyte rec 99.0 7.1E-10 2.4E-14 93.9 9.9 130 155-303 39-170 (229)
112 1xeu_A Internalin C; cellular 99.0 5.6E-11 1.9E-15 102.9 2.8 21 236-257 168-188 (263)
113 2v9t_B SLIT homolog 2 protein 99.0 8.7E-10 3E-14 92.7 9.9 149 10-194 14-163 (220)
114 2v70_A SLIT-2, SLIT homolog 2 99.0 1.9E-09 6.5E-14 90.6 11.1 149 10-194 14-164 (220)
115 1dce_A Protein (RAB geranylger 99.0 1.2E-12 3.9E-17 125.7 -10.5 120 157-299 442-567 (567)
116 3e6j_A Variable lymphocyte rec 99.0 2.4E-09 8.2E-14 90.5 9.9 148 10-194 22-170 (229)
117 2ell_A Acidic leucine-rich nuc 98.9 2.1E-09 7.2E-14 86.2 8.3 32 7-39 24-57 (168)
118 2xot_A Amphoterin-induced prot 98.9 3E-09 1E-13 96.4 10.2 165 10-210 21-188 (361)
119 2v9t_B SLIT homolog 2 protein 98.9 3.9E-09 1.3E-13 88.7 10.1 131 155-303 31-163 (220)
120 2v70_A SLIT-2, SLIT homolog 2 98.9 4.6E-09 1.6E-13 88.3 10.3 133 155-304 31-165 (220)
121 1a9n_A U2A', U2A'; complex (nu 98.9 1E-09 3.6E-14 88.8 5.6 107 69-193 43-150 (176)
122 3sb4_A Hypothetical leucine ri 98.9 4.6E-09 1.6E-13 93.8 10.2 79 239-326 225-305 (329)
123 2xot_A Amphoterin-induced prot 98.9 4E-09 1.4E-13 95.6 9.1 149 54-224 27-179 (361)
124 1dce_A Protein (RAB geranylger 98.9 2.5E-09 8.7E-14 102.5 6.8 101 8-132 442-543 (567)
125 2je0_A Acidic leucine-rich nuc 98.8 2.3E-09 8E-14 84.1 4.2 105 4-130 39-148 (149)
126 1w8a_A SLIT protein; signaling 98.8 1.5E-08 5.2E-13 83.1 9.1 101 10-133 11-113 (192)
127 2wfh_A SLIT homolog 2 protein 98.8 1.6E-08 5.5E-13 83.0 9.2 124 10-166 13-136 (193)
128 4fdw_A Leucine rich hypothetic 98.7 1.1E-06 3.8E-11 80.5 20.3 215 68-327 157-379 (401)
129 4fdw_A Leucine rich hypothetic 98.7 6.7E-07 2.3E-11 81.9 18.3 197 64-301 176-379 (401)
130 1w8a_A SLIT protein; signaling 98.7 2.5E-08 8.4E-13 81.8 7.8 107 7-134 29-138 (192)
131 1a9n_A U2A', U2A'; complex (nu 98.7 1.7E-08 5.9E-13 81.5 6.7 133 179-330 15-152 (176)
132 2wfh_A SLIT homolog 2 protein 98.7 2.8E-08 9.5E-13 81.6 7.7 108 6-134 30-138 (193)
133 1ds9_A Outer arm dynein; leuci 98.7 1.8E-10 6.1E-15 95.2 -5.6 137 20-189 37-180 (198)
134 4b8c_D Glucose-repressible alc 98.6 1.7E-08 5.8E-13 99.7 5.4 108 5-135 222-329 (727)
135 2o6r_A Variable lymphocyte rec 98.6 8.6E-08 3E-12 77.4 8.5 126 9-167 9-135 (177)
136 3e4g_A ATP synthase subunit S, 98.6 1.6E-08 5.5E-13 80.8 3.4 88 241-333 62-154 (176)
137 2o6r_A Variable lymphocyte rec 98.6 2.9E-07 9.8E-12 74.2 9.6 107 182-303 27-135 (177)
138 1ds9_A Outer arm dynein; leuci 98.5 9.5E-10 3.2E-14 90.8 -5.9 136 56-215 36-180 (198)
139 2r9u_A Variable lymphocyte rec 98.5 2.2E-07 7.5E-12 74.8 7.7 101 10-133 15-116 (174)
140 3g39_A Variable lymphocyte rec 98.5 2.2E-07 7.6E-12 74.5 7.6 102 9-133 11-113 (170)
141 4b8c_D Glucose-repressible alc 98.5 1.1E-07 3.8E-12 93.9 6.1 111 24-167 217-327 (727)
142 3e4g_A ATP synthase subunit S, 98.5 6.8E-08 2.3E-12 77.2 3.0 89 97-198 62-154 (176)
143 4fs7_A Uncharacterized protein 98.4 1.1E-05 3.8E-10 73.6 17.2 82 236-327 293-375 (394)
144 3g39_A Variable lymphocyte rec 98.3 1.9E-06 6.6E-11 68.9 7.9 62 237-303 51-113 (170)
145 2r9u_A Variable lymphocyte rec 98.3 2.5E-06 8.6E-11 68.5 8.0 62 237-303 54-116 (174)
146 4fs7_A Uncharacterized protein 98.1 4.3E-05 1.5E-09 69.7 13.8 77 236-323 316-393 (394)
147 2ra8_A Uncharacterized protein 98.1 1.1E-06 3.7E-11 79.3 2.6 183 22-222 130-321 (362)
148 4gt6_A Cell surface protein; l 98.1 0.00025 8.4E-09 64.6 17.7 83 236-328 284-367 (394)
149 2ifg_A High affinity nerve gro 98.0 7.9E-06 2.7E-10 73.2 6.8 102 11-133 12-114 (347)
150 2ra8_A Uncharacterized protein 98.0 5.4E-06 1.9E-10 74.7 5.3 68 238-308 250-322 (362)
151 4h09_A Hypothetical leucine ri 97.9 0.00054 1.9E-08 61.9 17.9 33 6-40 45-78 (379)
152 3un9_A NLR family member X1; l 97.8 6.4E-07 2.2E-11 81.2 -3.7 11 183-193 211-221 (372)
153 4gt6_A Cell surface protein; l 97.8 0.00071 2.4E-08 61.6 16.6 125 179-326 261-386 (394)
154 2ifg_A High affinity nerve gro 97.8 6.1E-05 2.1E-09 67.3 8.1 85 180-278 28-113 (347)
155 3un9_A NLR family member X1; l 97.8 1.3E-06 4.5E-11 79.2 -2.9 174 120-308 70-254 (372)
156 1io0_A Tropomodulin; LRR prote 97.2 0.00012 4.2E-09 59.2 2.5 90 28-129 33-128 (185)
157 4h09_A Hypothetical leucine ri 97.0 0.042 1.4E-06 49.3 17.1 105 2-133 64-169 (379)
158 3rw6_A Nuclear RNA export fact 96.4 0.0024 8.3E-08 54.5 4.3 93 65-164 167-259 (267)
159 1io0_A Tropomodulin; LRR prote 96.0 0.0017 5.9E-08 52.3 1.3 12 182-193 35-46 (185)
160 3rw6_A Nuclear RNA export fact 95.8 0.0063 2.2E-07 52.0 3.6 81 238-324 168-257 (267)
161 3rfe_A Platelet glycoprotein I 85.9 1.2 3.9E-05 33.2 5.0 38 95-134 30-67 (130)
162 3rfe_A Platelet glycoprotein I 83.3 1 3.6E-05 33.4 3.7 36 240-279 31-66 (130)
163 1pgv_A TMD-1, tropomodulin TMD 81.7 0.29 9.9E-06 39.4 0.0 64 66-132 68-136 (197)
164 1pgv_A TMD-1, tropomodulin TMD 64.0 2.3 7.8E-05 34.1 1.2 118 65-193 38-167 (197)
165 2lz0_A Uncharacterized protein 30.9 73 0.0025 21.9 4.5 43 253-300 8-51 (100)
No 1
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=6e-21 Score=180.32 Aligned_cols=286 Identities=17% Similarity=0.180 Sum_probs=155.3
Q ss_pred CCccEEeccccccceEec-cCCCCCCCceEEEecccccCcceeecC---------c-cchhhhhhcee-eeccCccceeE
Q 044585 7 PSLEQVSMTHCPNMKTFS-RGISSTPKLYVVQVTEREEGEHHWEGN---------K-LNSTIQKCYEV-MIGFRDIEHLQ 74 (352)
Q Consensus 7 ~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~---------~-~~~~~~~l~~~-~~~~~~L~~L~ 74 (352)
+++++|++.+| .++.++ ..+..+++|++|+++++.+.......- . .+..+..+|.. +..+++|++|+
T Consensus 32 ~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCC-ccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 46777777776 555553 455667777777777443222110000 0 01112222221 22344444444
Q ss_pred eccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCC
Q 044585 75 LSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPR 154 (352)
Q Consensus 75 l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~ 154 (352)
++++. +....... + ..+++|++|+++++ .+....+. .+..+++|++|++++|. +..++. ..+. .
T Consensus 111 Ls~n~-i~~~~~~~-~--~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~--------~~l~-~ 174 (477)
T 2id5_A 111 ISENK-IVILLDYM-F--QDLYNLKSLEVGDN-DLVYISHR-AFSGLNSLEQLTLEKCN-LTSIPT--------EALS-H 174 (477)
T ss_dssp CTTSC-CCEECTTT-T--TTCTTCCEEEECCT-TCCEECTT-SSTTCTTCCEEEEESCC-CSSCCH--------HHHT-T
T ss_pred CCCCc-cccCChhH-c--cccccCCEEECCCC-ccceeChh-hccCCCCCCEEECCCCc-CcccCh--------hHhc-c
Confidence 44443 32221111 1 23444444444444 23332221 13344455555554432 111110 0111 4
Q ss_pred CcccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCC
Q 044585 155 FPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLF 233 (352)
Q Consensus 155 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~ 233 (352)
+++|+.|++.++. +..+... .+..+++|+.|++++|..+..+ +.... ...+|+.|+ ..+.++.++...
T Consensus 175 l~~L~~L~l~~n~-i~~~~~~--~~~~l~~L~~L~l~~~~~~~~~-~~~~~-~~~~L~~L~l~~n~l~~~~~~~------ 243 (477)
T 2id5_A 175 LHGLIVLRLRHLN-INAIRDY--SFKRLYRLKVLEISHWPYLDTM-TPNCL-YGLNLTSLSITHCNLTAVPYLA------ 243 (477)
T ss_dssp CTTCCEEEEESCC-CCEECTT--CSCSCTTCCEEEEECCTTCCEE-CTTTT-TTCCCSEEEEESSCCCSCCHHH------
T ss_pred cCCCcEEeCCCCc-CcEeChh--hcccCcccceeeCCCCcccccc-Ccccc-cCccccEEECcCCcccccCHHH------
Confidence 5566666665543 2222111 3455677777777777666554 33333 334677777 444555443221
Q ss_pred CcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccc-cCCccCCCCCcEEeecCCcccccccccc
Q 044585 234 DEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKL-VPASWHLENLEALKVSKCHRLINLLTLS 312 (352)
Q Consensus 234 ~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 312 (352)
+..+++|+.|+++++ .++.++...+ ..+++|+.|+++++. ++.+ +..+..+++|++|+++++ +++.++. .
T Consensus 244 --~~~l~~L~~L~Ls~n-~l~~~~~~~~---~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-~ 314 (477)
T 2id5_A 244 --VRHLVYLRFLNLSYN-PISTIEGSML---HELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGN-QLTTLEE-S 314 (477)
T ss_dssp --HTTCTTCCEEECCSS-CCCEECTTSC---TTCTTCCEEECCSSC-CSEECTTTBTTCTTCCEEECCSS-CCSCCCG-G
T ss_pred --hcCccccCeeECCCC-cCCccChhhc---cccccCCEEECCCCc-cceECHHHhcCcccCCEEECCCC-cCceeCH-h
Confidence 456789999999984 5777776666 688999999999884 5544 557788999999999777 6677644 4
Q ss_pred ccCccccccEEEEeccc
Q 044585 313 TSRSLIILQSMTIADCK 329 (352)
Q Consensus 313 ~~~~l~~L~~L~i~~c~ 329 (352)
.+..+++|+.|++.+++
T Consensus 315 ~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 315 VFHSVGNLETLILDSNP 331 (477)
T ss_dssp GBSCGGGCCEEECCSSC
T ss_pred HcCCCcccCEEEccCCC
Confidence 56778999999998764
No 2
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.86 E-value=6.5e-21 Score=178.91 Aligned_cols=300 Identities=13% Similarity=0.128 Sum_probs=176.3
Q ss_pred CCccEEeccccccceEe-ccCCCCCCCceEEEecccccCcce----eecC------c-cchhhhhh-ceeeeccCcccee
Q 044585 7 PSLEQVSMTHCPNMKTF-SRGISSTPKLYVVQVTEREEGEHH----WEGN------K-LNSTIQKC-YEVMIGFRDIEHL 73 (352)
Q Consensus 7 ~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~~~~~~~~----~~~~------~-~~~~~~~l-~~~~~~~~~L~~L 73 (352)
++|++|++.+| .++.+ +..+..+++|++|+++++.+.... +... . .+..+..+ |..+..+++|++|
T Consensus 30 ~~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLN-SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSS-CCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred CccCEEEecCC-ccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence 56777777776 45544 455667777777777755332110 0000 0 01122222 4455667777777
Q ss_pred EeccCCCcce-eccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeee-eccc-------
Q 044585 74 QLSHFPRLRE-IWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLH-LEEL------- 144 (352)
Q Consensus 74 ~l~~~~~l~~-~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~------- 144 (352)
++++|. ++. .+....+ +.+++|++|++++| .+....+...+..+++|++|++++|......+. +...
T Consensus 109 ~L~~n~-l~~~~~~~~~~--~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~ 184 (455)
T 3v47_A 109 TLTQCN-LDGAVLSGNFF--KPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTL 184 (455)
T ss_dssp ECTTSC-CBTHHHHSSTT--TTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEE
T ss_pred eCCCCC-CCccccCcccc--cCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccc
Confidence 777776 442 1221101 35778888888877 455555544466788888888877653221110 0000
Q ss_pred -cc----ccc------------ccCCCCcccCeeccccccccc----------------cccccC---------------
Q 044585 145 -NA----KEE------------HIGPRFPRLNRLRLIDLPKLK----------------RFCNFT--------------- 176 (352)
Q Consensus 145 -~~----~~~------------~~~~~~~~L~~L~l~~~~~l~----------------~~~~~~--------------- 176 (352)
.. ... .+. .+++|+.|+++++.-.. .+....
T Consensus 185 L~l~~n~l~~~~~~~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 263 (455)
T 3v47_A 185 LRLSSITLQDMNEYWLGWEKCGNPF-KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD 263 (455)
T ss_dssp EECTTCBCTTCSTTCTTHHHHCCTT-TTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCC
T ss_pred cccccCcccccchhhcccccccccc-ccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhcc
Confidence 00 000 001 23567777776652111 000000
Q ss_pred ---C--ceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCcceeecccc
Q 044585 177 ---G--NIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRL 250 (352)
Q Consensus 177 ---~--~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 250 (352)
. .....++|+.|+++++ .+....+..+ ..+++|+.|+ ..+.++.+.... ++.+++|++|+++++
T Consensus 264 ~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~--------~~~l~~L~~L~Ls~N 333 (455)
T 3v47_A 264 PDNFTFKGLEASGVKTCDLSKS-KIFALLKSVF-SHFTDLEQLTLAQNEINKIDDNA--------FWGLTHLLKLNLSQN 333 (455)
T ss_dssp CCTTTTGGGTTSCCCEEECCSS-CCCEECTTTT-TTCTTCCEEECTTSCCCEECTTT--------TTTCTTCCEEECCSS
T ss_pred CcccccccccccCceEEEecCc-cccccchhhc-ccCCCCCEEECCCCcccccChhH--------hcCcccCCEEECCCC
Confidence 0 0001257778888776 4555434444 4778888888 666666544322 456789999999995
Q ss_pred cccccccccccccccccCCcceEEEecCCCcccc-cCCccCCCCCcEEeecCCccccccccccccCccccccEEEEeccc
Q 044585 251 HKVQHLWKENDESNKAFANLKSLEIFECSKLQKL-VPASWHLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIADCK 329 (352)
Q Consensus 251 ~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 329 (352)
.++.+....+ ..+++|++|++++| .++.+ +..+..+++|++|+++++ +++.+++ ..+..+++|+.|++++++
T Consensus 334 -~l~~~~~~~~---~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 334 -FLGSIDSRMF---ENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTN-QLKSVPD-GIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp -CCCEECGGGG---TTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred -ccCCcChhHh---cCcccCCEEECCCC-cccccChhhccccccccEEECCCC-ccccCCH-hHhccCCcccEEEccCCC
Confidence 6677765555 67899999999998 45555 567888999999999776 6777754 356788999999998754
No 3
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.85 E-value=3.5e-20 Score=167.73 Aligned_cols=272 Identities=15% Similarity=0.182 Sum_probs=152.0
Q ss_pred ecCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCccee
Q 044585 5 EFPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREI 84 (352)
Q Consensus 5 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~ 84 (352)
++++|++|++.++ .+..++. +..+++|++|++++|.+. .++. +..+++|++|+++++. ++.+
T Consensus 42 ~l~~L~~L~l~~~-~i~~~~~-~~~~~~L~~L~l~~n~i~--------------~~~~-~~~l~~L~~L~L~~n~-i~~~ 103 (347)
T 4fmz_A 42 ELESITKLVVAGE-KVASIQG-IEYLTNLEYLNLNGNQIT--------------DISP-LSNLVKLTNLYIGTNK-ITDI 103 (347)
T ss_dssp HHTTCSEEECCSS-CCCCCTT-GGGCTTCCEEECCSSCCC--------------CCGG-GTTCTTCCEEECCSSC-CCCC
T ss_pred hcccccEEEEeCC-ccccchh-hhhcCCccEEEccCCccc--------------cchh-hhcCCcCCEEEccCCc-ccCc
Confidence 4678888888887 5666653 667888888888854322 2222 4456667777776664 5443
Q ss_pred ccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeecccccc------------ccccC
Q 044585 85 WHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAK------------EEHIG 152 (352)
Q Consensus 85 ~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~------------~~~~~ 152 (352)
+. . ..+++|++|++++| .+....+ +..+++|+.|++++|.....+..+...... ...+.
T Consensus 104 ~~-~----~~l~~L~~L~l~~n-~i~~~~~---~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 174 (347)
T 4fmz_A 104 SA-L----QNLTNLRELYLNED-NISDISP---LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIA 174 (347)
T ss_dssp GG-G----TTCTTCSEEECTTS-CCCCCGG---GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGG
T ss_pred hH-H----cCCCcCCEEECcCC-cccCchh---hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhc
Confidence 21 1 24666666666665 3444322 345666666666666544433222100000 00011
Q ss_pred CCCcccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCC
Q 044585 153 PRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQP 231 (352)
Q Consensus 153 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~ 231 (352)
.+++|+.|+++++. +..+. .+..+++|+.|.++++ .+....+ ...+++|+.|+ ..+.++.+..
T Consensus 175 -~l~~L~~L~l~~n~-l~~~~----~~~~l~~L~~L~l~~n-~l~~~~~---~~~~~~L~~L~l~~n~l~~~~~------ 238 (347)
T 4fmz_A 175 -NLTDLYSLSLNYNQ-IEDIS----PLASLTSLHYFTAYVN-QITDITP---VANMTRLNSLKIGNNKITDLSP------ 238 (347)
T ss_dssp -GCTTCSEEECTTSC-CCCCG----GGGGCTTCCEEECCSS-CCCCCGG---GGGCTTCCEEECCSSCCCCCGG------
T ss_pred -cCCCCCEEEccCCc-ccccc----cccCCCccceeecccC-CCCCCch---hhcCCcCCEEEccCCccCCCcc------
Confidence 34444444444432 11111 1334455555555554 2332211 23455666665 4334433221
Q ss_pred CCCcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCccccccccc
Q 044585 232 LFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTL 311 (352)
Q Consensus 232 ~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~ 311 (352)
+..+++|++|+++++ .++.++ .+ ..+++|+.|++++| .++.++ .+..+++|++|++++|. ++...+
T Consensus 239 ----~~~l~~L~~L~l~~n-~l~~~~--~~---~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~L~~n~-l~~~~~- 304 (347)
T 4fmz_A 239 ----LANLSQLTWLEIGTN-QISDIN--AV---KDLTKLKMLNVGSN-QISDIS-VLNNLSQLNSLFLNNNQ-LGNEDM- 304 (347)
T ss_dssp ----GTTCTTCCEEECCSS-CCCCCG--GG---TTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSC-CCGGGH-
T ss_pred ----hhcCCCCCEEECCCC-ccCCCh--hH---hcCCCcCEEEccCC-ccCCCh-hhcCCCCCCEEECcCCc-CCCcCh-
Confidence 355778888888885 555543 22 57888999999887 566664 45788899999998874 444433
Q ss_pred cccCccccccEEEEeccccccee
Q 044585 312 STSRSLIILQSMTIADCKRIEEI 334 (352)
Q Consensus 312 ~~~~~l~~L~~L~i~~c~~l~~~ 334 (352)
..+..+++|+.|++++|+ ++.+
T Consensus 305 ~~l~~l~~L~~L~L~~n~-l~~~ 326 (347)
T 4fmz_A 305 EVIGGLTNLTTLFLSQNH-ITDI 326 (347)
T ss_dssp HHHHTCTTCSEEECCSSS-CCCC
T ss_pred hHhhccccCCEEEccCCc-cccc
Confidence 245668889999999986 4443
No 4
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.84 E-value=2.2e-20 Score=169.10 Aligned_cols=273 Identities=15% Similarity=0.162 Sum_probs=175.9
Q ss_pred eecCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecC-c-------cchhhhhhceeeeccCccceeEe
Q 044585 4 LEFPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGN-K-------LNSTIQKCYEVMIGFRDIEHLQL 75 (352)
Q Consensus 4 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~-------~~~~~~~l~~~~~~~~~L~~L~l 75 (352)
..+++|++|++.+| .++.++. +..+++|++|++++|.+........ . .+..+..++. +..+++|++|++
T Consensus 63 ~~~~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l 139 (347)
T 4fmz_A 63 EYLTNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNL 139 (347)
T ss_dssp GGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEEC
T ss_pred hhcCCccEEEccCC-ccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh-hccCCceeEEEC
Confidence 35789999999998 7777776 7789999999999765444321000 0 0111222222 334455555555
Q ss_pred ccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCC
Q 044585 76 SHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRF 155 (352)
Q Consensus 76 ~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~ 155 (352)
++|..+...+. . ..+++|++|++++| .+....+ +..+++|++|++++|. +..++. +. .+
T Consensus 140 ~~n~~~~~~~~-~----~~l~~L~~L~l~~~-~~~~~~~---~~~l~~L~~L~l~~n~-l~~~~~----------~~-~l 198 (347)
T 4fmz_A 140 GANHNLSDLSP-L----SNMTGLNYLTVTES-KVKDVTP---IANLTDLYSLSLNYNQ-IEDISP----------LA-SL 198 (347)
T ss_dssp TTCTTCCCCGG-G----TTCTTCCEEECCSS-CCCCCGG---GGGCTTCSEEECTTSC-CCCCGG----------GG-GC
T ss_pred CCCCCcccccc-h----hhCCCCcEEEecCC-CcCCchh---hccCCCCCEEEccCCc-cccccc----------cc-CC
Confidence 55543332211 1 24556666666665 2333222 3456667777776653 222221 12 68
Q ss_pred cccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCC
Q 044585 156 PRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFD 234 (352)
Q Consensus 156 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~ 234 (352)
++|+.|++.++. +..+. .+..+++|+.|++++| .++.+.+ ...+++|+.|+ ..+.++.+.
T Consensus 199 ~~L~~L~l~~n~-l~~~~----~~~~~~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n~l~~~~---------- 259 (347)
T 4fmz_A 199 TSLHYFTAYVNQ-ITDIT----PVANMTRLNSLKIGNN-KITDLSP---LANLSQLTWLEIGTNQISDIN---------- 259 (347)
T ss_dssp TTCCEEECCSSC-CCCCG----GGGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSSCCCCCG----------
T ss_pred CccceeecccCC-CCCCc----hhhcCCcCCEEEccCC-ccCCCcc---hhcCCCCCEEECCCCccCCCh----------
Confidence 899999998764 33322 2567899999999998 5555433 45789999998 655665542
Q ss_pred cccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCcccccccccccc
Q 044585 235 EKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTS 314 (352)
Q Consensus 235 ~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 314 (352)
.+..+++|++|++++| .++.++. + ..+++|+.|++++|......+..+..+++|++|++++|+ ++.+++ .
T Consensus 260 ~~~~l~~L~~L~l~~n-~l~~~~~--~---~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~---~ 329 (347)
T 4fmz_A 260 AVKDLTKLKMLNVGSN-QISDISV--L---NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP---L 329 (347)
T ss_dssp GGTTCTTCCEEECCSS-CCCCCGG--G---GGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGG---G
T ss_pred hHhcCCCcCEEEccCC-ccCCChh--h---cCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccC---h
Confidence 1466899999999996 6666632 3 688999999999995433444556789999999999886 666644 5
Q ss_pred CccccccEEEEeccc
Q 044585 315 RSLIILQSMTIADCK 329 (352)
Q Consensus 315 ~~l~~L~~L~i~~c~ 329 (352)
..+++|+.|++++|+
T Consensus 330 ~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 330 ASLSKMDSADFANQV 344 (347)
T ss_dssp GGCTTCSEESSSCC-
T ss_pred hhhhccceeehhhhc
Confidence 668899999999886
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.83 E-value=8.4e-20 Score=177.51 Aligned_cols=236 Identities=14% Similarity=0.121 Sum_probs=120.2
Q ss_pred eeccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCC-chhhhcCCCCcEEEEccCCCcceeeeec
Q 044585 64 MIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIP-TNLLRCLNNLRCLEVRNCDLIEEVLHLE 142 (352)
Q Consensus 64 ~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 142 (352)
+..+++|++|+++++.....++... + +.+++|++|++++| .+..... ...+..+++|++|++++|.. ..+..
T Consensus 321 ~~~l~~L~~L~l~~n~~~~~~~~~~-~--~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~-- 393 (606)
T 3t6q_A 321 ASNFPSLTHLSIKGNTKRLELGTGC-L--ENLENLRELDLSHD-DIETSDCCNLQLRNLSHLQSLNLSYNEP-LSLKT-- 393 (606)
T ss_dssp GGGCTTCSEEECCSCSSCCBCCSST-T--TTCTTCCEEECCSS-CCCEEEESTTTTTTCTTCCEEECCSCSC-EEECT--
T ss_pred hhccCcCCEEECCCCCcccccchhh-h--hccCcCCEEECCCC-ccccccCcchhcccCCCCCEEECCCCcC-CcCCH--
Confidence 3445555555555544221222221 1 23555555555555 2332210 11234555555555555432 11100
Q ss_pred cccccccccCCCCcccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccc
Q 044585 143 ELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEE 221 (352)
Q Consensus 143 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~ 221 (352)
..+. .+++|+.|+++++.-....+. . .+..+++|+.|++++| .+....+..+ ..+++|+.|+ ..+.++
T Consensus 394 ------~~~~-~l~~L~~L~l~~n~l~~~~~~-~-~~~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~L~~n~l~ 462 (606)
T 3t6q_A 394 ------EAFK-ECPQLELLDLAFTRLKVKDAQ-S-PFQNLHLLKVLNLSHS-LLDISSEQLF-DGLPALQHLNLQGNHFP 462 (606)
T ss_dssp ------TTTT-TCTTCSEEECTTCCEECCTTC-C-TTTTCTTCCEEECTTC-CCBTTCTTTT-TTCTTCCEEECTTCBCG
T ss_pred ------HHhc-CCccCCeEECCCCcCCCcccc-h-hhhCcccCCEEECCCC-ccCCcCHHHH-hCCCCCCEEECCCCCCC
Confidence 0111 456666666665532211111 1 2445667777777766 3443323333 3567777776 544444
Q ss_pred hhhhhcccCCCCCcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecC
Q 044585 222 NFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSK 301 (352)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~ 301 (352)
...... ...++.+++|++|++++| .++.++...+ ..+++|+.|+++++.-....|..+..+++| +|++++
T Consensus 463 ~~~~~~-----~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~ 532 (606)
T 3t6q_A 463 KGNIQK-----TNSLQTLGRLEILVLSFC-DLSSIDQHAF---TSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLAS 532 (606)
T ss_dssp GGEECS-----SCGGGGCTTCCEEECTTS-CCCEECTTTT---TTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCS
T ss_pred cccccc-----chhhccCCCccEEECCCC-ccCccChhhh---ccccCCCEEECCCCccCcCChhHhCccccc-EEECcC
Confidence 321110 011455677788888774 5555554444 567778888887774333444566677777 788766
Q ss_pred CccccccccccccCccccccEEEEeccc
Q 044585 302 CHRLINLLTLSTSRSLIILQSMTIADCK 329 (352)
Q Consensus 302 c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 329 (352)
+ +++.+++ ..+..+++|+.++++++|
T Consensus 533 N-~l~~~~~-~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 533 N-HISIILP-SLLPILSQQRTINLRQNP 558 (606)
T ss_dssp S-CCCCCCG-GGHHHHHTSSEEECTTCC
T ss_pred C-cccccCH-hhcccCCCCCEEeCCCCC
Confidence 6 4445533 234567778888887765
No 6
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.83 E-value=1.8e-19 Score=165.74 Aligned_cols=124 Identities=15% Similarity=0.194 Sum_probs=76.0
Q ss_pred cCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCcceeeccccccccccccccc
Q 044585 183 SELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKEND 261 (352)
Q Consensus 183 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~ 261 (352)
++|+.|+++++ .++.. .....+++|++|+ +.+.++.+.... ++.+++|++|++++ +.++.++...
T Consensus 226 ~~L~~L~l~~n-~l~~~---~~l~~l~~L~~L~Ls~n~l~~~~~~~--------~~~l~~L~~L~L~~-n~l~~~~~~~- 291 (390)
T 3o6n_A 226 VELTILKLQHN-NLTDT---AWLLNYPGLVEVDLSYNELEKIMYHP--------FVKMQRLERLYISN-NRLVALNLYG- 291 (390)
T ss_dssp SSCCEEECCSS-CCCCC---GGGGGCTTCSEEECCSSCCCEEESGG--------GTTCSSCCEEECCS-SCCCEEECSS-
T ss_pred ccccEEECCCC-CCccc---HHHcCCCCccEEECCCCcCCCcChhH--------ccccccCCEEECCC-CcCcccCccc-
Confidence 46666666665 33332 1233566777776 555555443221 34567777787777 3556555432
Q ss_pred ccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCccccccccccccCccccccEEEEeccc
Q 044585 262 ESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIADCK 329 (352)
Q Consensus 262 ~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 329 (352)
..+++|+.|++++| .++.+|..+..+++|++|++++|+ ++.++ ...+++|+.|++++++
T Consensus 292 ---~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~----~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 292 ---QPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS-IVTLK----LSTHHTLKNLTLSHND 350 (390)
T ss_dssp ---SCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCCC----CCTTCCCSEEECCSSC
T ss_pred ---CCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCc-cceeC----chhhccCCEEEcCCCC
Confidence 35677888888777 566676666677788888886664 45542 3456778888887753
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.83 E-value=1.3e-19 Score=180.74 Aligned_cols=95 Identities=14% Similarity=-0.006 Sum_probs=71.9
Q ss_pred ccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCccccccccccccC
Q 044585 236 KLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTSR 315 (352)
Q Consensus 236 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 315 (352)
++.+++|+.|+++++.--..+|.. + ..++.|+.|+++++.-...+|..++.+++|++|+++++.--..+|. .+.
T Consensus 628 ~~~l~~L~~LdLs~N~l~g~ip~~-l---~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~--~l~ 701 (768)
T 3rgz_A 628 FDNNGSMMFLDMSYNMLSGYIPKE-I---GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ--AMS 701 (768)
T ss_dssp CSSSBCCCEEECCSSCCBSCCCGG-G---GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCG--GGG
T ss_pred hhccccccEEECcCCcccccCCHH-H---hccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCCh--HHh
Confidence 455688999999996443455543 4 6889999999999865558888899999999999988754444433 466
Q ss_pred ccccccEEEEecccccceecc
Q 044585 316 SLIILQSMTIADCKRIEEIIQ 336 (352)
Q Consensus 316 ~l~~L~~L~i~~c~~l~~~~~ 336 (352)
.+++|++|++++++.-..++.
T Consensus 702 ~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 702 ALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp GCCCCSEEECCSSEEEEECCS
T ss_pred CCCCCCEEECcCCcccccCCC
Confidence 788999999999876555554
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.82 E-value=4.4e-20 Score=184.18 Aligned_cols=294 Identities=15% Similarity=0.055 Sum_probs=164.4
Q ss_pred ecCCccEEeccccccce-EeccCCCCCCCceEEEecccccCcceee--cC----------ccchhhhhhceeeeccCccc
Q 044585 5 EFPSLEQVSMTHCPNMK-TFSRGISSTPKLYVVQVTEREEGEHHWE--GN----------KLNSTIQKCYEVMIGFRDIE 71 (352)
Q Consensus 5 ~l~~L~~L~l~~~~~l~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~--~~----------~~~~~~~~l~~~~~~~~~L~ 71 (352)
.+++|++|++.+| .+. .+|.. .+++|++|++++|.+.+.... .. ..|.-...+|..+..+++|+
T Consensus 245 ~l~~L~~L~Ls~n-~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 321 (768)
T 3rgz_A 245 TCTELKLLNISSN-QFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 321 (768)
T ss_dssp TCSSCCEEECCSS-CCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCC
T ss_pred cCCCCCEEECCCC-cccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCcc
Confidence 4778888888888 444 33332 677888888885432210000 00 00111112333334444444
Q ss_pred eeEeccCCCcc-eeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCC-CCcEEEEccCCCcceeeeecccccccc
Q 044585 72 HLQLSHFPRLR-EIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLN-NLRCLEVRNCDLIEEVLHLEELNAKEE 149 (352)
Q Consensus 72 ~L~l~~~~~l~-~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~-~L~~L~l~~~~~l~~~~~~~~~~~~~~ 149 (352)
+|+++++. +. .++... + +.+++|++|++++| .+....|.. +..++ +|+.|++++|.....++...
T Consensus 322 ~L~L~~n~-l~~~ip~~~-l--~~l~~L~~L~Ls~n-~l~~~~p~~-l~~l~~~L~~L~Ls~N~l~~~~~~~~------- 388 (768)
T 3rgz_A 322 SLALSSNN-FSGELPMDT-L--LKMRGLKVLDLSFN-EFSGELPES-LTNLSASLLTLDLSSNNFSGPILPNL------- 388 (768)
T ss_dssp EEECCSSE-EEEECCHHH-H--TTCTTCCEEECCSS-EEEECCCTT-HHHHTTTCSEEECCSSEEEEECCTTT-------
T ss_pred EEECCCCc-ccCcCCHHH-H--hcCCCCCEEeCcCC-ccCccccHH-HHhhhcCCcEEEccCCCcCCCcChhh-------
Confidence 44444443 22 222110 0 23444555555544 233222222 22333 45555554443221111100
Q ss_pred ccCCCCcccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcc
Q 044585 150 HIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQ 228 (352)
Q Consensus 150 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~ 228 (352)
....+++|+.|++.++.-...++. .+..+++|+.|++++| .++...|..+. .+++|+.|+ ..+.+....+..
T Consensus 389 -~~~~~~~L~~L~L~~n~l~~~~p~---~l~~l~~L~~L~Ls~N-~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~- 461 (768)
T 3rgz_A 389 -CQNPKNTLQELYLQNNGFTGKIPP---TLSNCSELVSLHLSFN-YLSGTIPSSLG-SLSKLRDLKLWLNMLEGEIPQE- 461 (768)
T ss_dssp -TCSTTCCCCEEECCSSEEEEECCG---GGGGCTTCCEEECCSS-EEESCCCGGGG-GCTTCCEEECCSSCCCSCCCGG-
T ss_pred -hhcccCCccEEECCCCccccccCH---HHhcCCCCCEEECcCC-cccCcccHHHh-cCCCCCEEECCCCcccCcCCHH-
Confidence 000256788888877653333332 4567788888888887 44444455554 778888887 555554332221
Q ss_pred cCCCCCcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCcccccc
Q 044585 229 VQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINL 308 (352)
Q Consensus 229 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~ 308 (352)
++.+++|++|+++++.....++ ..+ ..+++|+.|++++|.....+|..+..+++|++|++++|.....+
T Consensus 462 -------~~~l~~L~~L~L~~N~l~~~~p-~~l---~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 530 (768)
T 3rgz_A 462 -------LMYVKTLETLILDFNDLTGEIP-SGL---SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 530 (768)
T ss_dssp -------GGGCTTCCEEECCSSCCCSCCC-GGG---GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEEC
T ss_pred -------HcCCCCceEEEecCCcccCcCC-HHH---hcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcC
Confidence 4567899999999964433444 334 57899999999998655578888889999999999888654455
Q ss_pred ccccccCccccccEEEEeccccccee
Q 044585 309 LTLSTSRSLIILQSMTIADCKRIEEI 334 (352)
Q Consensus 309 ~~~~~~~~l~~L~~L~i~~c~~l~~~ 334 (352)
|. .+..+++|+.|++++|+....+
T Consensus 531 p~--~l~~l~~L~~L~Ls~N~l~g~i 554 (768)
T 3rgz_A 531 PA--ELGDCRSLIWLDLNTNLFNGTI 554 (768)
T ss_dssp CG--GGGGCTTCCEEECCSSEEESBC
T ss_pred CH--HHcCCCCCCEEECCCCccCCcC
Confidence 33 4567899999999988654333
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.82 E-value=1.6e-19 Score=175.60 Aligned_cols=271 Identities=13% Similarity=0.054 Sum_probs=195.9
Q ss_pred ecCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCccee
Q 044585 5 EFPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREI 84 (352)
Q Consensus 5 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~ 84 (352)
.+++|++|++.++ .++.++ .+..+++|++|++++| .+..+|. + .+++|++|+++++..+...
T Consensus 283 ~l~~L~~L~l~~~-~~~~l~-~l~~~~~L~~L~l~~n--------------~l~~lp~-~-~l~~L~~L~l~~n~~~~~~ 344 (606)
T 3vq2_A 283 CLANVSAMSLAGV-SIKYLE-DVPKHFKWQSLSIIRC--------------QLKQFPT-L-DLPFLKSLTLTMNKGSISF 344 (606)
T ss_dssp GGTTCSEEEEESC-CCCCCC-CCCTTCCCSEEEEESC--------------CCSSCCC-C-CCSSCCEEEEESCSSCEEC
T ss_pred cCCCCCEEEecCc-cchhhh-hccccccCCEEEcccc--------------cCccccc-C-CCCccceeeccCCcCccch
Confidence 4688899999888 667777 6778889999999943 3355663 3 8899999999998756543
Q ss_pred ccCCCCCCCCCCCccEEEEecCCCCcccC-CchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeecc
Q 044585 85 WHGQAVPVSFFNNLRQLAVDDCTNMSSAI-PTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRL 163 (352)
Q Consensus 85 ~~~~~l~~~~l~~L~~L~l~~c~~l~~~~-~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l 163 (352)
+. +.+++|++|++++| .+.... ....+..+++|++|++++|. +..++. .+. .+++|+.|++
T Consensus 345 ~~------~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~---------~~~-~l~~L~~L~l 406 (606)
T 3vq2_A 345 KK------VALPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSA---------NFM-GLEELQHLDF 406 (606)
T ss_dssp CC------CCCTTCCEEECCSS-CEEEEEECCHHHHCCSCCCEEECCSCS-EEEECC---------CCT-TCTTCCEEEC
T ss_pred hh------ccCCCCCEEECcCC-ccCCCcchhhhhccCCcccEeECCCCc-cccchh---------hcc-CCCCCCeeEC
Confidence 21 46899999999998 455442 12336789999999999976 444431 112 6889999999
Q ss_pred ccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCc
Q 044585 164 IDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQL 242 (352)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L 242 (352)
+++.-.. ..... .+..+++|+.|++++|. +....|..+ ..+++|+.|+ ..+.++...... .++.+++|
T Consensus 407 ~~n~l~~-~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~-------~~~~l~~L 475 (606)
T 3vq2_A 407 QHSTLKR-VTEFS-AFLSLEKLLYLDISYTN-TKIDFDGIF-LGLTSLNTLKMAGNSFKDNTLSN-------VFANTTNL 475 (606)
T ss_dssp TTSEEES-TTTTT-TTTTCTTCCEEECTTSC-CEECCTTTT-TTCTTCCEEECTTCEEGGGEECS-------CCTTCTTC
T ss_pred CCCccCC-ccChh-hhhccccCCEEECcCCC-CCccchhhh-cCCCCCCEEECCCCcCCCcchHH-------hhccCCCC
Confidence 9875333 22211 45678999999999984 555445444 4789999998 666666521111 14678999
Q ss_pred ceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCccccccccccccCccc-ccc
Q 044585 243 KELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTSRSLI-ILQ 321 (352)
Q Consensus 243 ~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~-~L~ 321 (352)
++|++++| .++.++...+ ..+++|+.|++++|.-....|..+..+++|++|++++|+ ++.++.. +..++ +|+
T Consensus 476 ~~L~Ls~n-~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~--~~~l~~~L~ 548 (606)
T 3vq2_A 476 TFLDLSKC-QLEQISWGVF---DTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGI--LQHFPKSLA 548 (606)
T ss_dssp CEEECTTS-CCCEECTTTT---TTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESC--GGGSCTTCC
T ss_pred CEEECCCC-cCCccChhhh---cccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHh--HhhhcccCc
Confidence 99999996 6666665555 688999999999995433446778899999999998874 7777553 55665 599
Q ss_pred EEEEeccc
Q 044585 322 SMTIADCK 329 (352)
Q Consensus 322 ~L~i~~c~ 329 (352)
.|+++++|
T Consensus 549 ~l~l~~N~ 556 (606)
T 3vq2_A 549 FFNLTNNS 556 (606)
T ss_dssp EEECCSCC
T ss_pred EEEccCCC
Confidence 99998865
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.82 E-value=3.1e-20 Score=181.36 Aligned_cols=274 Identities=15% Similarity=0.108 Sum_probs=166.3
Q ss_pred eecCCccEEeccccccceE------------------eccCCC--CCCCceEEEecccccCcceeecCccchhhhhhcee
Q 044585 4 LEFPSLEQVSMTHCPNMKT------------------FSRGIS--STPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEV 63 (352)
Q Consensus 4 ~~l~~L~~L~l~~~~~l~~------------------l~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~ 63 (352)
.++++|++|++.+| .++. +|..++ .+++|++|++++ |.-...+|..
T Consensus 203 ~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~-------------n~l~~~~p~~ 268 (636)
T 4eco_A 203 MRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYN-------------CPNLTKLPTF 268 (636)
T ss_dssp GGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEEC-------------CTTCSSCCTT
T ss_pred hcccCCCEEECcCC-ccccccccccccccccchhcccCchhhhhcccCCCCEEEecC-------------CcCCccChHH
Confidence 45889999999998 5776 888888 899999999994 3344556767
Q ss_pred eeccCccceeEeccCCCcc--eeccCCCCCCCC------CCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCc
Q 044585 64 MIGFRDIEHLQLSHFPRLR--EIWHGQAVPVSF------FNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLI 135 (352)
Q Consensus 64 ~~~~~~L~~L~l~~~~~l~--~~~~~~~l~~~~------l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l 135 (352)
+..+++|++|+++++..++ .++... +. +++|++|++++| .+...+....+..+++|++|++++|...
T Consensus 269 l~~l~~L~~L~Ls~n~~l~~~~lp~~~----~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N~l~ 343 (636)
T 4eco_A 269 LKALPEMQLINVACNRGISGEQLKDDW----QALADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYNQLE 343 (636)
T ss_dssp TTTCSSCCEEECTTCTTSCHHHHHHHH----HHHHHSGGGGTCCEEECCSS-CCSSCCCHHHHTTCTTCCEEECCSCCCE
T ss_pred HhcCCCCCEEECcCCCCCccccchHHH----HhhhccccCCCCCEEECCCC-cCCccCchhhhccCCCCCEEeCcCCcCc
Confidence 7778888888888775343 233222 22 377888888877 4554332124667788888888776533
Q ss_pred ceeeeeccccccccccCCCCcccCeeccccccccccccccCCceeeccC-cceEeeccCCCCcccccchhhh--------
Q 044585 136 EEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSE-LENLTIENCPDMETFISNSVVH-------- 206 (352)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~-L~~L~l~~c~~l~~~~~~~~~~-------- 206 (352)
..++.+. .+++|+.|+++++. +..++. .+..+++ |+.|+++++. ++.+ |..+..
T Consensus 344 g~ip~~~-----------~l~~L~~L~L~~N~-l~~lp~---~l~~l~~~L~~L~Ls~N~-l~~l-p~~~~~~~l~~L~~ 406 (636)
T 4eco_A 344 GKLPAFG-----------SEIKLASLNLAYNQ-ITEIPA---NFCGFTEQVENLSFAHNK-LKYI-PNIFDAKSVSVMSA 406 (636)
T ss_dssp EECCCCE-----------EEEEESEEECCSSE-EEECCT---TSEEECTTCCEEECCSSC-CSSC-CSCCCTTCSSCEEE
T ss_pred cchhhhC-----------CCCCCCEEECCCCc-cccccH---hhhhhcccCcEEEccCCc-Cccc-chhhhhcccCccCE
Confidence 2443221 45555555555442 222222 2444454 5555555542 3322 322210
Q ss_pred ------------------------ccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCcceeeccccccccccccccc
Q 044585 207 ------------------------VTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKEND 261 (352)
Q Consensus 207 ------------------------~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~ 261 (352)
.+++|+.|+ ..+.++.++... +..+++|++|+++++ .++.++...+
T Consensus 407 L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~--------~~~l~~L~~L~Ls~N-~l~~i~~~~~ 477 (636)
T 4eco_A 407 IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKEL--------FSTGSPLSSINLMGN-MLTEIPKNSL 477 (636)
T ss_dssp EECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHH--------HHTTCCCSEEECCSS-CCSBCCSSSS
T ss_pred EECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHH--------HccCCCCCEEECCCC-CCCCcCHHHh
Confidence 223444444 333333222111 234678888888884 5666765544
Q ss_pred cccccc-------CCcceEEEecCCCcccccCCcc--CCCCCcEEeecCCccccccccccccCccccccEEEEeccc
Q 044585 262 ESNKAF-------ANLKSLEIFECSKLQKLVPASW--HLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIADCK 329 (352)
Q Consensus 262 ~~~~~~-------~~L~~L~l~~c~~l~~l~~~~~--~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 329 (352)
... ++|+.|+++++ .++.+|..+. .+++|++|+++++ +++.+|. .+..+++|+.|+++++.
T Consensus 478 ---~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N-~l~~ip~--~~~~l~~L~~L~Ls~N~ 547 (636)
T 4eco_A 478 ---KDENENFKNTYLLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPT--QPLNSSTLKGFGIRNQR 547 (636)
T ss_dssp ---EETTEECTTGGGCCEEECCSS-CCCBCCGGGSTTTCTTCCEEECCSS-CCSSCCC--GGGGCSSCCEEECCSCB
T ss_pred ---ccccccccccCCccEEECcCC-cCCccChhhhhccCCCcCEEECCCC-CCCCcCh--hhhcCCCCCEEECCCCc
Confidence 222 28889999887 5667887665 8889999999776 4555543 34568889999996543
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.82 E-value=2e-19 Score=179.72 Aligned_cols=294 Identities=12% Similarity=0.080 Sum_probs=150.2
Q ss_pred ecCCccEEeccccccceEeccCCCCCCCceEEEecccc-cCc--ce-----------------eecCccchhhhhhce--
Q 044585 5 EFPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTERE-EGE--HH-----------------WEGNKLNSTIQKCYE-- 62 (352)
Q Consensus 5 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~-~~~--~~-----------------~~~~~~~~~~~~l~~-- 62 (352)
++++|++|++.+|.....+|..+..+++|++|++++|. +.. .+ .... .+..+..+|.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~L-s~N~L~~ip~~~ 567 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYM-GYNNLEEFPASA 567 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEEC-CSSCCCBCCCHH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEe-eCCcCCccCChh
Confidence 68999999999997677889888999999999999875 443 11 0011 1123335666
Q ss_pred eeeccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCC-CcEEEEccCCCcceeeee
Q 044585 63 VMIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNN-LRCLEVRNCDLIEEVLHL 141 (352)
Q Consensus 63 ~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~-L~~L~l~~~~~l~~~~~~ 141 (352)
.+..+++|+.|+++++. ++.++ .. +.+++|++|++++| .+.. .|.. +..+++ |+.|++++|. +..++..
T Consensus 568 ~l~~L~~L~~L~Ls~N~-l~~lp-~~----~~L~~L~~L~Ls~N-~l~~-lp~~-l~~l~~~L~~L~Ls~N~-L~~lp~~ 637 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNK-VRHLE-AF----GTNVKLTDLKLDYN-QIEE-IPED-FCAFTDQVEGLGFSHNK-LKYIPNI 637 (876)
T ss_dssp HHTTCTTCCEEECTTSC-CCBCC-CC----CTTSEESEEECCSS-CCSC-CCTT-SCEECTTCCEEECCSSC-CCSCCSC
T ss_pred hhhcCCCCCEEECCCCC-cccch-hh----cCCCcceEEECcCC-cccc-chHH-HhhccccCCEEECcCCC-CCcCchh
Confidence 66677777777777766 55544 22 35677777777776 3443 3322 556666 7777777765 3333221
Q ss_pred ccccccccccCCCCcccCeeccccccccccccccCC--ceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCC
Q 044585 142 EELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTG--NIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLT 218 (352)
Q Consensus 142 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~--~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~ 218 (352)
.... ..++|+.|+++++.-...++.... .....++|+.|++++| .++.+ |..+...+++|+.|+ +.+
T Consensus 638 ~~~~--------~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~l-p~~~~~~l~~L~~L~Ls~N 707 (876)
T 4ecn_A 638 FNAK--------SVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKF-PTELFATGSPISTIILSNN 707 (876)
T ss_dssp CCTT--------CSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS-CCCSC-CHHHHHTTCCCSEEECCSC
T ss_pred hhcc--------ccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC-cCCcc-CHHHHccCCCCCEEECCCC
Confidence 1000 122356666655432111110000 0112335556665555 33332 444444555555555 444
Q ss_pred ccchhhhhcccCC---------------------CCC-ccc--ccCCcceeecccccccccccccccccccccCCcceEE
Q 044585 219 SEENFLLAHQVQP---------------------LFD-EKL--TFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLE 274 (352)
Q Consensus 219 ~l~~~~~~~~~~~---------------------~~~-~~~--~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~ 274 (352)
.++.++....... .++ .+. .+++|+.|+++++ .++.++... ..+++|+.|+
T Consensus 708 ~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~~l----~~L~~L~~L~ 782 (876)
T 4ecn_A 708 LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQP----LNSSQLKAFG 782 (876)
T ss_dssp CCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSS-CCSSCCCGG----GGCTTCCEEE
T ss_pred cCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCC-CCCccchhh----hcCCCCCEEE
Confidence 4443222110000 000 011 3455555555552 333343222 2555555555
Q ss_pred Eec------CCCcccccCCccCCCCCcEEeecCCccccccccccccCccccccEEEEeccc
Q 044585 275 IFE------CSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIADCK 329 (352)
Q Consensus 275 l~~------c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 329 (352)
+++ +.....+|..+..+++|++|++++|.- ..+|.. +. ++|+.|++++|+
T Consensus 783 Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~-l~---~~L~~LdLs~N~ 838 (876)
T 4ecn_A 783 IRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK-LT---PQLYILDIADNP 838 (876)
T ss_dssp CCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CC---SSSCEEECCSCT
T ss_pred CCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHh-hc---CCCCEEECCCCC
Confidence 544 222334444555556666666655532 444332 21 356666666654
No 12
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.82 E-value=6.6e-19 Score=158.33 Aligned_cols=267 Identities=12% Similarity=0.129 Sum_probs=145.3
Q ss_pred CccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhce-eeeccCccceeEeccCCCcceecc
Q 044585 8 SLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYE-VMIGFRDIEHLQLSHFPRLREIWH 86 (352)
Q Consensus 8 ~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~ 86 (352)
+++++++.++ .++.+|..+ .++|++|+++++. +..++. .+..+++|++|+++++. ++.+..
T Consensus 32 ~l~~l~~~~~-~l~~lp~~~--~~~l~~L~L~~n~--------------i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~ 93 (330)
T 1xku_A 32 HLRVVQCSDL-GLEKVPKDL--PPDTALLDLQNNK--------------ITEIKDGDFKNLKNLHTLILINNK-ISKISP 93 (330)
T ss_dssp ETTEEECTTS-CCCSCCCSC--CTTCCEEECCSSC--------------CCCBCTTTTTTCTTCCEEECCSSC-CCCBCT
T ss_pred CCeEEEecCC-CccccCccC--CCCCeEEECCCCc--------------CCEeChhhhccCCCCCEEECCCCc-CCeeCH
Confidence 5677777665 566666544 3677777777432 223332 34466777777777665 544322
Q ss_pred CCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccc
Q 044585 87 GQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDL 166 (352)
Q Consensus 87 ~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 166 (352)
.. + +.+++|++|++++| .+...+ .. ..++|++|++++|. +..++. ..+. .+++|+.|+++++
T Consensus 94 ~~-~--~~l~~L~~L~Ls~n-~l~~l~-~~---~~~~L~~L~l~~n~-l~~~~~--------~~~~-~l~~L~~L~l~~n 155 (330)
T 1xku_A 94 GA-F--APLVKLERLYLSKN-QLKELP-EK---MPKTLQELRVHENE-ITKVRK--------SVFN-GLNQMIVVELGTN 155 (330)
T ss_dssp TT-T--TTCTTCCEEECCSS-CCSBCC-SS---CCTTCCEEECCSSC-CCBBCH--------HHHT-TCTTCCEEECCSS
T ss_pred HH-h--cCCCCCCEEECCCC-cCCccC-hh---hcccccEEECCCCc-ccccCH--------hHhc-CCccccEEECCCC
Confidence 11 1 34667777777776 344432 22 12567777777654 222211 0011 5667777777654
Q ss_pred cccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCccee
Q 044585 167 PKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKEL 245 (352)
Q Consensus 167 ~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L 245 (352)
.- .........+..+++|+.|.++++ .++.+ |..+. ++|++|+ ..+.++.+.... +..+++|++|
T Consensus 156 ~l-~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l-~~~~~---~~L~~L~l~~n~l~~~~~~~--------~~~l~~L~~L 221 (330)
T 1xku_A 156 PL-KSSGIENGAFQGMKKLSYIRIADT-NITTI-PQGLP---PSLTELHLDGNKITKVDAAS--------LKGLNNLAKL 221 (330)
T ss_dssp CC-CGGGBCTTGGGGCTTCCEEECCSS-CCCSC-CSSCC---TTCSEEECTTSCCCEECTGG--------GTTCTTCCEE
T ss_pred cC-CccCcChhhccCCCCcCEEECCCC-ccccC-Ccccc---ccCCEEECCCCcCCccCHHH--------hcCCCCCCEE
Confidence 32 111111113455667777777666 34443 43332 5666666 544554432221 3456677777
Q ss_pred ecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCcccccccccccc-----Cccccc
Q 044585 246 KLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTS-----RSLIIL 320 (352)
Q Consensus 246 ~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~-----~~l~~L 320 (352)
+++++ .++.++...+ ..+++|+.|++++| .++.+|..+..+++|++|+++++ .++.++..... ...++|
T Consensus 222 ~Ls~n-~l~~~~~~~~---~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l 295 (330)
T 1xku_A 222 GLSFN-SISAVDNGSL---ANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASY 295 (330)
T ss_dssp ECCSS-CCCEECTTTG---GGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCC
T ss_pred ECCCC-cCceeChhhc---cCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccc
Confidence 77773 4555554444 46677777777776 45667666667777777777655 34554332211 123556
Q ss_pred cEEEEecccc
Q 044585 321 QSMTIADCKR 330 (352)
Q Consensus 321 ~~L~i~~c~~ 330 (352)
+.+++.+.|.
T Consensus 296 ~~l~l~~N~~ 305 (330)
T 1xku_A 296 SGVSLFSNPV 305 (330)
T ss_dssp SEEECCSSSS
T ss_pred cceEeecCcc
Confidence 6777776653
No 13
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.82 E-value=1.7e-19 Score=169.15 Aligned_cols=87 Identities=17% Similarity=0.176 Sum_probs=60.0
Q ss_pred ccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccc-cCCccCCCCCcEEeecCCcccccccccccc
Q 044585 236 KLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKL-VPASWHLENLEALKVSKCHRLINLLTLSTS 314 (352)
Q Consensus 236 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 314 (352)
++.+++|++|+++++ .++.++...+ ..+++|+.|++++| .++.+ +..+..+++|++|++++| +++.+++ ..+
T Consensus 295 ~~~l~~L~~L~Ls~n-~l~~~~~~~~---~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~ 367 (455)
T 3v47_A 295 FSHFTDLEQLTLAQN-EINKIDDNAF---WGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYN-HIRALGD-QSF 367 (455)
T ss_dssp TTTCTTCCEEECTTS-CCCEECTTTT---TTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEECCSS-CCCEECT-TTT
T ss_pred cccCCCCCEEECCCC-cccccChhHh---cCcccCCEEECCCC-ccCCcChhHhcCcccCCEEECCCC-cccccCh-hhc
Confidence 455677888888774 5555555444 57788888888887 44554 445677888888888776 4555533 245
Q ss_pred CccccccEEEEeccc
Q 044585 315 RSLIILQSMTIADCK 329 (352)
Q Consensus 315 ~~l~~L~~L~i~~c~ 329 (352)
..+++|++|+++++.
T Consensus 368 ~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 368 LGLPNLKELALDTNQ 382 (455)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred cccccccEEECCCCc
Confidence 667888888888863
No 14
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.82 E-value=3.3e-19 Score=173.32 Aligned_cols=275 Identities=17% Similarity=0.150 Sum_probs=196.9
Q ss_pred CccEEeccccccceEeccC-CCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceecc
Q 044585 8 SLEQVSMTHCPNMKTFSRG-ISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWH 86 (352)
Q Consensus 8 ~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~ 86 (352)
+|++|++.+| .++.++.. +..+++|++|+++++ .+..+|..+..+++|++|+++++. ++....
T Consensus 255 ~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n--------------~l~~lp~~l~~l~~L~~L~l~~n~-l~~~~~ 318 (606)
T 3t6q_A 255 SVESINLQKH-YFFNISSNTFHCFSGLQELDLTAT--------------HLSELPSGLVGLSTLKKLVLSANK-FENLCQ 318 (606)
T ss_dssp EEEEEECTTC-CCSSCCTTTTTTCTTCSEEECTTS--------------CCSCCCSSCCSCTTCCEEECTTCC-CSBGGG
T ss_pred ceeEEEeecC-ccCccCHHHhccccCCCEEeccCC--------------ccCCCChhhcccccCCEEECccCC-cCcCch
Confidence 7899999998 66666654 678999999999943 455677778889999999999987 655432
Q ss_pred CCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccc
Q 044585 87 GQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDL 166 (352)
Q Consensus 87 ~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 166 (352)
.. + ..+++|++|++++|. +....+...+..+++|++|++++|... .+... ...+. .+++|+.|+++++
T Consensus 319 ~~-~--~~l~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~------~~~~~-~l~~L~~L~l~~n 386 (606)
T 3t6q_A 319 IS-A--SNFPSLTHLSIKGNT-KRLELGTGCLENLENLRELDLSHDDIE-TSDCC------NLQLR-NLSHLQSLNLSYN 386 (606)
T ss_dssp GC-G--GGCTTCSEEECCSCS-SCCBCCSSTTTTCTTCCEEECCSSCCC-EEEES------TTTTT-TCTTCCEEECCSC
T ss_pred hh-h--hccCcCCEEECCCCC-cccccchhhhhccCcCCEEECCCCccc-cccCc------chhcc-cCCCCCEEECCCC
Confidence 22 2 468999999999984 443344444778999999999997643 32110 01122 7899999999987
Q ss_pred cccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCccee
Q 044585 167 PKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKEL 245 (352)
Q Consensus 167 ~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L 245 (352)
. +..+... .+..+++|+.|+++++. ++...+...+..+++|+.|+ ..+.++...... ++.+++|++|
T Consensus 387 ~-l~~~~~~--~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--------~~~l~~L~~L 454 (606)
T 3t6q_A 387 E-PLSLKTE--AFKECPQLELLDLAFTR-LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL--------FDGLPALQHL 454 (606)
T ss_dssp S-CEEECTT--TTTTCTTCSEEECTTCC-EECCTTCCTTTTCTTCCEEECTTCCCBTTCTTT--------TTTCTTCCEE
T ss_pred c-CCcCCHH--HhcCCccCCeEECCCCc-CCCcccchhhhCcccCCEEECCCCccCCcCHHH--------HhCCCCCCEE
Confidence 5 3333221 45678999999999984 44443445455889999998 666665544332 4668999999
Q ss_pred eccccccccc--ccc-cccccccccCCcceEEEecCCCcccc-cCCccCCCCCcEEeecCCccccccccccccCcccccc
Q 044585 246 KLSRLHKVQH--LWK-ENDESNKAFANLKSLEIFECSKLQKL-VPASWHLENLEALKVSKCHRLINLLTLSTSRSLIILQ 321 (352)
Q Consensus 246 ~l~~~~~l~~--l~~-~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~ 321 (352)
+++++. ++. ++. ..+ ..+++|+.|++++|. ++.+ |..+..+++|++|+++++ +++...+ ..+..+++|
T Consensus 455 ~L~~n~-l~~~~~~~~~~~---~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~l~~l~~L- 526 (606)
T 3t6q_A 455 NLQGNH-FPKGNIQKTNSL---QTLGRLEILVLSFCD-LSSIDQHAFTSLKMMNHVDLSHN-RLTSSSI-EALSHLKGI- 526 (606)
T ss_dssp ECTTCB-CGGGEECSSCGG---GGCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCCGGGG-GGGTTCCSC-
T ss_pred ECCCCC-CCccccccchhh---ccCCCccEEECCCCc-cCccChhhhccccCCCEEECCCC-ccCcCCh-hHhCccccc-
Confidence 999964 433 111 223 578999999999994 5554 567889999999999887 4555544 356678889
Q ss_pred EEEEecccc
Q 044585 322 SMTIADCKR 330 (352)
Q Consensus 322 ~L~i~~c~~ 330 (352)
.|+++++..
T Consensus 527 ~L~L~~N~l 535 (606)
T 3t6q_A 527 YLNLASNHI 535 (606)
T ss_dssp EEECCSSCC
T ss_pred EEECcCCcc
Confidence 999988843
No 15
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=1.1e-19 Score=163.14 Aligned_cols=230 Identities=20% Similarity=0.278 Sum_probs=120.4
Q ss_pred CCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCC
Q 044585 30 TPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNM 109 (352)
Q Consensus 30 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l 109 (352)
..++++|++++ ..+..+|..++.+++|++|+++++. ++.++... +.+++|++|++++| .+
T Consensus 80 ~~~l~~L~L~~--------------n~l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~----~~l~~L~~L~Ls~n-~l 139 (328)
T 4fcg_A 80 QPGRVALELRS--------------VPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTM----QQFAGLETLTLARN-PL 139 (328)
T ss_dssp STTCCEEEEES--------------SCCSSCCSCGGGGTTCSEEEEESSC-CCCCCSCG----GGGTTCSEEEEESC-CC
T ss_pred ccceeEEEccC--------------CCchhcChhhhhCCCCCEEECCCCC-ccchhHHH----hccCCCCEEECCCC-cc
Confidence 45666666662 2334555555566666666666655 44444332 35666777777766 34
Q ss_pred cccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccccccccccccCCceeeccCcceEe
Q 044585 110 SSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLT 189 (352)
Q Consensus 110 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~ 189 (352)
... |.. +..+++|++|++++|..+..++...........+. .+++|++|+++++. ++.++. .+..+++|+.|+
T Consensus 140 ~~l-p~~-l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~-~l~~L~~L~L~~n~-l~~lp~---~l~~l~~L~~L~ 212 (328)
T 4fcg_A 140 RAL-PAS-IASLNRLRELSIRACPELTELPEPLASTDASGEHQ-GLVNLQSLRLEWTG-IRSLPA---SIANLQNLKSLK 212 (328)
T ss_dssp CCC-CGG-GGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEE-ESTTCCEEEEEEEC-CCCCCG---GGGGCTTCCEEE
T ss_pred ccC-cHH-HhcCcCCCEEECCCCCCccccChhHhhccchhhhc-cCCCCCEEECcCCC-cCcchH---hhcCCCCCCEEE
Confidence 432 322 55667777777776665554432111000000111 47777777777653 444333 456677888888
Q ss_pred eccCCCCcccccchhhhccCCCCCCCCCCccchhhhhcccCCCCCcccccCCcceeecccccccccccccccccccccCC
Q 044585 190 IENCPDMETFISNSVVHVTTNNKEPQKLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFAN 269 (352)
Q Consensus 190 l~~c~~l~~~~~~~~~~~~~~L~~L~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~ 269 (352)
+++| .++.+ |..+ +.+++|++|++++|+..+.++.. + ..+++
T Consensus 213 L~~N-~l~~l-~~~l--------------------------------~~l~~L~~L~Ls~n~~~~~~p~~-~---~~l~~ 254 (328)
T 4fcg_A 213 IRNS-PLSAL-GPAI--------------------------------HHLPKLEELDLRGCTALRNYPPI-F---GGRAP 254 (328)
T ss_dssp EESS-CCCCC-CGGG--------------------------------GGCTTCCEEECTTCTTCCBCCCC-T---TCCCC
T ss_pred ccCC-CCCcC-chhh--------------------------------ccCCCCCEEECcCCcchhhhHHH-h---cCCCC
Confidence 8877 34433 3222 22345555555554444444322 1 34555
Q ss_pred cceEEEecCCCcccccCCccCCCCCcEEeecCCccccccccccccCccccccEEEEe
Q 044585 270 LKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIA 326 (352)
Q Consensus 270 L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~ 326 (352)
|+.|++++|..+..+|..+..+++|++|++++|+.+..+|. .+..+++|+.+.+.
T Consensus 255 L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~--~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 255 LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS--LIAQLPANCIILVP 309 (328)
T ss_dssp CCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG--GGGGSCTTCEEECC
T ss_pred CCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH--HHhhccCceEEeCC
Confidence 55555555555555555555555555555555555555432 23445555555444
No 16
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.82 E-value=2.5e-19 Score=169.16 Aligned_cols=268 Identities=15% Similarity=0.161 Sum_probs=154.2
Q ss_pred cEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceeccCCC
Q 044585 10 EQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWHGQA 89 (352)
Q Consensus 10 ~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 89 (352)
+.++..+. +++.+|..+ .+++++|+++++.+.... +..+..+++|++|+++++. ++.+....
T Consensus 14 ~~v~c~~~-~l~~ip~~~--~~~l~~L~L~~n~l~~~~-------------~~~~~~l~~L~~L~L~~n~-i~~~~~~~- 75 (477)
T 2id5_A 14 RAVLCHRK-RFVAVPEGI--PTETRLLDLGKNRIKTLN-------------QDEFASFPHLEELELNENI-VSAVEPGA- 75 (477)
T ss_dssp TEEECCSC-CCSSCCSCC--CTTCSEEECCSSCCCEEC-------------TTTTTTCTTCCEEECTTSC-CCEECTTT-
T ss_pred CEEEeCCC-CcCcCCCCC--CCCCcEEECCCCccceEC-------------HhHccCCCCCCEEECCCCc-cCEeChhh-
Confidence 45565554 778888766 579999999954333221 2345577888888888876 66553322
Q ss_pred CCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeecccccccc
Q 044585 90 VPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKL 169 (352)
Q Consensus 90 l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 169 (352)
+ ..+++|++|++++| .+...++ ..+..+++|++|++++|.. ..+.. ..+. .+++|+.|++.++. +
T Consensus 76 ~--~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~i-~~~~~--------~~~~-~l~~L~~L~l~~n~-l 140 (477)
T 2id5_A 76 F--NNLFNLRTLGLRSN-RLKLIPL-GVFTGLSNLTKLDISENKI-VILLD--------YMFQ-DLYNLKSLEVGDND-L 140 (477)
T ss_dssp T--TTCTTCCEEECCSS-CCCSCCT-TSSTTCTTCCEEECTTSCC-CEECT--------TTTT-TCTTCCEEEECCTT-C
T ss_pred h--hCCccCCEEECCCC-cCCccCc-ccccCCCCCCEEECCCCcc-ccCCh--------hHcc-ccccCCEEECCCCc-c
Confidence 2 35788888888887 4555433 3356788888888887653 22211 0111 56777777776643 3
Q ss_pred ccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCcceeecc
Q 044585 170 KRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLS 248 (352)
Q Consensus 170 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 248 (352)
..+... .+..+++|+.|+++++ .++.+ +...+..+++|+.|+ ..+.+..+.... +..+++|+.|+++
T Consensus 141 ~~~~~~--~~~~l~~L~~L~l~~n-~l~~~-~~~~l~~l~~L~~L~l~~n~i~~~~~~~--------~~~l~~L~~L~l~ 208 (477)
T 2id5_A 141 VYISHR--AFSGLNSLEQLTLEKC-NLTSI-PTEALSHLHGLIVLRLRHLNINAIRDYS--------FKRLYRLKVLEIS 208 (477)
T ss_dssp CEECTT--SSTTCTTCCEEEEESC-CCSSC-CHHHHTTCTTCCEEEEESCCCCEECTTC--------SCSCTTCCEEEEE
T ss_pred ceeChh--hccCCCCCCEEECCCC-cCccc-ChhHhcccCCCcEEeCCCCcCcEeChhh--------cccCcccceeeCC
Confidence 322211 3445667777777766 44444 333334566666666 444443332211 2334444444444
Q ss_pred ccc-----------------------ccccccccccccccccCCcceEEEecCCCcccccC-CccCCCCCcEEeecCCcc
Q 044585 249 RLH-----------------------KVQHLWKENDESNKAFANLKSLEIFECSKLQKLVP-ASWHLENLEALKVSKCHR 304 (352)
Q Consensus 249 ~~~-----------------------~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~ 304 (352)
+++ .++.++...+ ..+++|+.|+++++. ++.++. .+..+++|++|+++++ +
T Consensus 209 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~ 283 (477)
T 2id5_A 209 HWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAV---RHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGG-Q 283 (477)
T ss_dssp CCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHH---TTCTTCCEEECCSSC-CCEECTTSCTTCTTCCEEECCSS-C
T ss_pred CCccccccCcccccCccccEEECcCCcccccCHHHh---cCccccCeeECCCCc-CCccChhhccccccCCEEECCCC-c
Confidence 443 3444443333 456667777776663 444432 4566777777777655 4
Q ss_pred ccccccccccCccccccEEEEecc
Q 044585 305 LINLLTLSTSRSLIILQSMTIADC 328 (352)
Q Consensus 305 l~~~~~~~~~~~l~~L~~L~i~~c 328 (352)
++.+.+ ..+..+++|+.|+++++
T Consensus 284 l~~~~~-~~~~~l~~L~~L~L~~N 306 (477)
T 2id5_A 284 LAVVEP-YAFRGLNYLRVLNVSGN 306 (477)
T ss_dssp CSEECT-TTBTTCTTCCEEECCSS
T ss_pred cceECH-HHhcCcccCCEEECCCC
Confidence 444433 24566777888888776
No 17
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.82 E-value=1.1e-18 Score=157.12 Aligned_cols=244 Identities=16% Similarity=0.233 Sum_probs=107.2
Q ss_pred CccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhc-eeeeccCccceeEeccCCCcceecc
Q 044585 8 SLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCY-EVMIGFRDIEHLQLSHFPRLREIWH 86 (352)
Q Consensus 8 ~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~ 86 (352)
+++++++.++ .++.+|..+ .++|++|+++++. +..++ ..+..+++|++|+++++. ++.+..
T Consensus 34 ~l~~l~~~~~-~l~~ip~~~--~~~l~~L~l~~n~--------------i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~ 95 (332)
T 2ft3_A 34 HLRVVQCSDL-GLKAVPKEI--SPDTTLLDLQNND--------------ISELRKDDFKGLQHLYALVLVNNK-ISKIHE 95 (332)
T ss_dssp ETTEEECCSS-CCSSCCSCC--CTTCCEEECCSSC--------------CCEECTTTTTTCTTCCEEECCSSC-CCEECG
T ss_pred cCCEEECCCC-CccccCCCC--CCCCeEEECCCCc--------------CCccCHhHhhCCCCCcEEECCCCc-cCccCH
Confidence 4566666655 455555544 3566666666332 22221 233455556666665554 443321
Q ss_pred CCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccc
Q 044585 87 GQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDL 166 (352)
Q Consensus 87 ~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 166 (352)
.. + +.+++|++|++++| .+...+. . ..++|++|++++|. +..++. ..+. .+++|+.|+++++
T Consensus 96 ~~-~--~~l~~L~~L~L~~n-~l~~l~~-~---~~~~L~~L~l~~n~-i~~~~~--------~~~~-~l~~L~~L~l~~n 157 (332)
T 2ft3_A 96 KA-F--SPLRKLQKLYISKN-HLVEIPP-N---LPSSLVELRIHDNR-IRKVPK--------GVFS-GLRNMNCIEMGGN 157 (332)
T ss_dssp GG-S--TTCTTCCEEECCSS-CCCSCCS-S---CCTTCCEEECCSSC-CCCCCS--------GGGS-SCSSCCEEECCSC
T ss_pred hH-h--hCcCCCCEEECCCC-cCCccCc-c---ccccCCEEECCCCc-cCccCH--------hHhC-CCccCCEEECCCC
Confidence 11 1 23555666666555 3333222 1 11455666655543 222211 0011 4555555555544
Q ss_pred cccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCccee
Q 044585 167 PKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKEL 245 (352)
Q Consensus 167 ~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L 245 (352)
. ++........+..+ +|+.|+++++ .++.+ |..+. ++|++|+ ..+.++.+.... +..+++|+.|
T Consensus 158 ~-l~~~~~~~~~~~~l-~L~~L~l~~n-~l~~l-~~~~~---~~L~~L~l~~n~i~~~~~~~--------l~~l~~L~~L 222 (332)
T 2ft3_A 158 P-LENSGFEPGAFDGL-KLNYLRISEA-KLTGI-PKDLP---ETLNELHLDHNKIQAIELED--------LLRYSKLYRL 222 (332)
T ss_dssp C-CBGGGSCTTSSCSC-CCSCCBCCSS-BCSSC-CSSSC---SSCSCCBCCSSCCCCCCTTS--------STTCTTCSCC
T ss_pred c-cccCCCCcccccCC-ccCEEECcCC-CCCcc-Ccccc---CCCCEEECCCCcCCccCHHH--------hcCCCCCCEE
Confidence 2 11100000012222 5555555554 23332 33222 4555555 434443332111 2344555555
Q ss_pred ecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCcccccc
Q 044585 246 KLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINL 308 (352)
Q Consensus 246 ~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~ 308 (352)
++++ +.++.++...+ ..+++|+.|+++++ .++.+|..+..+++|++|+++++ .++.+
T Consensus 223 ~L~~-N~l~~~~~~~~---~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~l~~~ 279 (332)
T 2ft3_A 223 GLGH-NQIRMIENGSL---SFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTN-NITKV 279 (332)
T ss_dssp BCCS-SCCCCCCTTGG---GGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSS-CCCBC
T ss_pred ECCC-CcCCcCChhHh---hCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCC-CCCcc
Confidence 5555 24444443333 34555555555554 34455555555555555555443 33443
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.82 E-value=1.3e-19 Score=177.05 Aligned_cols=295 Identities=10% Similarity=0.074 Sum_probs=149.2
Q ss_pred ecCCccEEeccccccceEeccCCCCCCCceEEEecccc-cCc--ce----------------eecCccchhhhhhce--e
Q 044585 5 EFPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTERE-EGE--HH----------------WEGNKLNSTIQKCYE--V 63 (352)
Q Consensus 5 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~-~~~--~~----------------~~~~~~~~~~~~l~~--~ 63 (352)
++++|++|++.+|.....+|..++.+++|++|++++|. +.+ .+ .... .+..+..+|. .
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L-~~n~l~~ip~~~~ 325 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYI-GYNNLKTFPVETS 325 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEEC-CSSCCSSCCCHHH
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEEC-CCCcCCccCchhh
Confidence 68999999999997677889989999999999999764 432 11 0000 0112334554 4
Q ss_pred eeccCccceeEeccCCCcc-eeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCC-CcEEEEccCCCcceeeee
Q 044585 64 MIGFRDIEHLQLSHFPRLR-EIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNN-LRCLEVRNCDLIEEVLHL 141 (352)
Q Consensus 64 ~~~~~~L~~L~l~~~~~l~-~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~-L~~L~l~~~~~l~~~~~~ 141 (352)
+..+++|++|+++++. ++ .++ .. +.+++|++|++++| .+.. .|.. +..+++ |++|++++|. +..++..
T Consensus 326 l~~l~~L~~L~L~~N~-l~g~ip-~~----~~l~~L~~L~L~~N-~l~~-lp~~-l~~l~~~L~~L~Ls~N~-l~~lp~~ 395 (636)
T 4eco_A 326 LQKMKKLGMLECLYNQ-LEGKLP-AF----GSEIKLASLNLAYN-QITE-IPAN-FCGFTEQVENLSFAHNK-LKYIPNI 395 (636)
T ss_dssp HTTCTTCCEEECCSCC-CEEECC-CC----EEEEEESEEECCSS-EEEE-CCTT-SEEECTTCCEEECCSSC-CSSCCSC
T ss_pred hccCCCCCEEeCcCCc-Cccchh-hh----CCCCCCCEEECCCC-cccc-ccHh-hhhhcccCcEEEccCCc-Ccccchh
Confidence 5555666666666555 43 433 22 34556666666665 3332 2222 445566 6666666654 2233221
Q ss_pred ccccccccccCCCCcccCeeccccccccccccccC----CceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-C
Q 044585 142 EELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFT----GNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-K 216 (352)
Q Consensus 142 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~----~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~ 216 (352)
.. ...+++|+.|+++++.-....+... .....+++|+.|+++++ .++.+ |..+...+++|+.|+ .
T Consensus 396 ~~--------~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~l-p~~~~~~l~~L~~L~Ls 465 (636)
T 4eco_A 396 FD--------AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKF-PKELFSTGSPLSSINLM 465 (636)
T ss_dssp CC--------TTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSC-CTHHHHTTCCCSEEECC
T ss_pred hh--------hcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC-ccCcC-CHHHHccCCCCCEEECC
Confidence 10 0023356666665543221111100 00113446666666665 34433 444444456666665 4
Q ss_pred CCccchhhhhcccC---------------------CCCC-ccc--ccCCcceeecccccccccccccccccccccCCcce
Q 044585 217 LTSEENFLLAHQVQ---------------------PLFD-EKL--TFPQLKELKLSRLHKVQHLWKENDESNKAFANLKS 272 (352)
Q Consensus 217 ~~~l~~~~~~~~~~---------------------~~~~-~~~--~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~ 272 (352)
.+.++.++...... ..++ .+. .+++|+.|+++++ .++.++... ..+++|+.
T Consensus 466 ~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~----~~l~~L~~ 540 (636)
T 4eco_A 466 GNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPTQP----LNSSTLKG 540 (636)
T ss_dssp SSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSS-CCSSCCCGG----GGCSSCCE
T ss_pred CCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCC-CCCCcChhh----hcCCCCCE
Confidence 44444322211000 0000 022 4556666666663 444444332 35566666
Q ss_pred EEEec------CCCcccccCCccCCCCCcEEeecCCccccccccccccCccccccEEEEecccc
Q 044585 273 LEIFE------CSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIADCKR 330 (352)
Q Consensus 273 L~l~~------c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~ 330 (352)
|++++ +.....+|..+..+++|++|++++|.- +.+|.. +. ++|+.|++++|+.
T Consensus 541 L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~-~~---~~L~~L~Ls~N~l 599 (636)
T 4eco_A 541 FGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK-IT---PNISVLDIKDNPN 599 (636)
T ss_dssp EECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CC---TTCCEEECCSCTT
T ss_pred EECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh-Hh---CcCCEEECcCCCC
Confidence 66643 222334555556666666666655533 555332 22 4566666666643
No 19
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=5.1e-19 Score=158.85 Aligned_cols=212 Identities=18% Similarity=0.289 Sum_probs=152.0
Q ss_pred ccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeecccc
Q 044585 66 GFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELN 145 (352)
Q Consensus 66 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 145 (352)
..+++++|+++++. ++.++... ..+++|++|++++| .+.. .|.. +..+++|++|++++|. +..++..
T Consensus 79 ~~~~l~~L~L~~n~-l~~lp~~l----~~l~~L~~L~L~~n-~l~~-lp~~-~~~l~~L~~L~Ls~n~-l~~lp~~---- 145 (328)
T 4fcg_A 79 TQPGRVALELRSVP-LPQFPDQA----FRLSHLQHMTIDAA-GLME-LPDT-MQQFAGLETLTLARNP-LRALPAS---- 145 (328)
T ss_dssp TSTTCCEEEEESSC-CSSCCSCG----GGGTTCSEEEEESS-CCCC-CCSC-GGGGTTCSEEEEESCC-CCCCCGG----
T ss_pred cccceeEEEccCCC-chhcChhh----hhCCCCCEEECCCC-Cccc-hhHH-HhccCCCCEEECCCCc-cccCcHH----
Confidence 45789999999877 77655544 46889999999998 4554 3432 5788999999999875 3344321
Q ss_pred ccccccCCCCcccCeeccccccccccccccCC------ceeeccCcceEeeccCCCCcccccchhhhccCCCCCCCCCCc
Q 044585 146 AKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTG------NIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQKLTS 219 (352)
Q Consensus 146 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~------~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~~~~~ 219 (352)
+. .+++|+.|++++|..+..++.... .+..+++|+.|+++++ .++.+ |..
T Consensus 146 -----l~-~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~l-p~~---------------- 201 (328)
T 4fcg_A 146 -----IA-SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSL-PAS---------------- 201 (328)
T ss_dssp -----GG-GCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCC-CGG----------------
T ss_pred -----Hh-cCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcc-hHh----------------
Confidence 11 678888888888776665543210 1334777777777776 33332 222
Q ss_pred cchhhhhcccCCCCCcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEee
Q 044585 220 EENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKV 299 (352)
Q Consensus 220 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l 299 (352)
++.+++|++|+++++ .++.++.. + ..+++|+.|++++|.....+|..+..+++|++|++
T Consensus 202 ----------------l~~l~~L~~L~L~~N-~l~~l~~~-l---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L 260 (328)
T 4fcg_A 202 ----------------IANLQNLKSLKIRNS-PLSALGPA-I---HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL 260 (328)
T ss_dssp ----------------GGGCTTCCEEEEESS-CCCCCCGG-G---GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEEC
T ss_pred ----------------hcCCCCCCEEEccCC-CCCcCchh-h---ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEEC
Confidence 245678899999884 56666544 3 57899999999998888888888888999999999
Q ss_pred cCCccccccccccccCccccccEEEEecccccceeccC
Q 044585 300 SKCHRLINLLTLSTSRSLIILQSMTIADCKRIEEIIQS 337 (352)
Q Consensus 300 ~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~ 337 (352)
++|+....++. .+..+++|+.|++++|+.+..++..
T Consensus 261 ~~n~~~~~~p~--~~~~l~~L~~L~L~~n~~~~~iP~~ 296 (328)
T 4fcg_A 261 KDCSNLLTLPL--DIHRLTQLEKLDLRGCVNLSRLPSL 296 (328)
T ss_dssp TTCTTCCBCCT--TGGGCTTCCEEECTTCTTCCCCCGG
T ss_pred CCCCchhhcch--hhhcCCCCCEEeCCCCCchhhccHH
Confidence 99988877754 3567889999999999887776653
No 20
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.81 E-value=5.5e-19 Score=162.51 Aligned_cols=260 Identities=14% Similarity=0.152 Sum_probs=181.4
Q ss_pred ecCCccEEeccccccceEecc-CCCCCCCceEEEecccccCcceeecCccchhhhhhc-eeeeccCccceeEeccCCCcc
Q 044585 5 EFPSLEQVSMTHCPNMKTFSR-GISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCY-EVMIGFRDIEHLQLSHFPRLR 82 (352)
Q Consensus 5 ~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~ 82 (352)
.+++|++|++.+| .++.++. .+..+++|++|+++++. +..++ ..+..+++|++|+++++. ++
T Consensus 67 ~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~--------------l~~~~~~~~~~l~~L~~L~L~~n~-l~ 130 (390)
T 3o6n_A 67 SFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNA--------------IRYLPPHVFQNVPLLTVLVLERND-LS 130 (390)
T ss_dssp HCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC--------------CCCCCTTTTTTCTTCCEEECCSSC-CC
T ss_pred ccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCC--------------CCcCCHHHhcCCCCCCEEECCCCc-cC
Confidence 4799999999998 6777765 67899999999999543 33333 335678999999999887 77
Q ss_pred eeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeec
Q 044585 83 EIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLR 162 (352)
Q Consensus 83 ~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~ 162 (352)
.++... + +.+++|++|++++| .+....+. .+..+++|++|++++|. ++.+ +.. .+++|+.|+
T Consensus 131 ~l~~~~-~--~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~l~~n~-l~~~-~~~-----------~l~~L~~L~ 192 (390)
T 3o6n_A 131 SLPRGI-F--HNTPKLTTLSMSNN-NLERIEDD-TFQATTSLQNLQLSSNR-LTHV-DLS-----------LIPSLFHAN 192 (390)
T ss_dssp CCCTTT-T--TTCTTCCEEECCSS-CCCBCCTT-TTSSCTTCCEEECCSSC-CSBC-CGG-----------GCTTCSEEE
T ss_pred cCCHHH-h--cCCCCCcEEECCCC-ccCccChh-hccCCCCCCEEECCCCc-CCcc-ccc-----------cccccceee
Confidence 655443 2 35889999999998 56655443 36788999999999865 3332 111 678888888
Q ss_pred cccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCC
Q 044585 163 LIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQ 241 (352)
Q Consensus 163 l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~ 241 (352)
++++. +.. +...++|++|+++++ .+..+ +.. ..++|+.|+ ..+.++... .++.+++
T Consensus 193 l~~n~-l~~-------~~~~~~L~~L~l~~n-~l~~~-~~~---~~~~L~~L~l~~n~l~~~~----------~l~~l~~ 249 (390)
T 3o6n_A 193 VSYNL-LST-------LAIPIAVEELDASHN-SINVV-RGP---VNVELTILKLQHNNLTDTA----------WLLNYPG 249 (390)
T ss_dssp CCSSC-CSE-------EECCSSCSEEECCSS-CCCEE-ECC---CCSSCCEEECCSSCCCCCG----------GGGGCTT
T ss_pred ccccc-ccc-------cCCCCcceEEECCCC-eeeec-ccc---ccccccEEECCCCCCcccH----------HHcCCCC
Confidence 87642 222 334568888888887 45544 332 236788877 555555431 1456788
Q ss_pred cceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCccccccccccccCcccccc
Q 044585 242 LKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTSRSLIILQ 321 (352)
Q Consensus 242 L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~ 321 (352)
|++|+++++ .++.+....+ ..+++|+.|+++++ .++.++.....+++|++|++++| .++.++. ....+++|+
T Consensus 250 L~~L~Ls~n-~l~~~~~~~~---~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~--~~~~l~~L~ 321 (390)
T 3o6n_A 250 LVEVDLSYN-ELEKIMYHPF---VKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVER--NQPQFDRLE 321 (390)
T ss_dssp CSEEECCSS-CCCEEESGGG---TTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGG--GHHHHTTCS
T ss_pred ccEEECCCC-cCCCcChhHc---cccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCC-cceecCc--cccccCcCC
Confidence 888888884 5565544444 57788888888887 56777766677888888888777 5566543 234577888
Q ss_pred EEEEeccc
Q 044585 322 SMTIADCK 329 (352)
Q Consensus 322 ~L~i~~c~ 329 (352)
.|++++|+
T Consensus 322 ~L~L~~N~ 329 (390)
T 3o6n_A 322 NLYLDHNS 329 (390)
T ss_dssp EEECCSSC
T ss_pred EEECCCCc
Confidence 88888875
No 21
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.81 E-value=9.1e-19 Score=169.88 Aligned_cols=262 Identities=14% Similarity=0.158 Sum_probs=157.9
Q ss_pred cCCccEEeccccccceEecc-CCCCCCCceEEEecccccCcceeecCccchhhhhhce-eeeccCccceeEeccCCCcce
Q 044585 6 FPSLEQVSMTHCPNMKTFSR-GISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYE-VMIGFRDIEHLQLSHFPRLRE 83 (352)
Q Consensus 6 l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~ 83 (352)
+++|++|++.+| .++.++. .+..+++|++|++++| .+..++. .+..+++|++|+++++. ++.
T Consensus 74 l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n--------------~l~~~~~~~~~~l~~L~~L~L~~n~-l~~ 137 (597)
T 3oja_B 74 FRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFN--------------AIRYLPPHVFQNVPLLTVLVLERND-LSS 137 (597)
T ss_dssp CCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSS--------------CCCCCCTTTTTTCTTCCEEECCSSC-CCC
T ss_pred CCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCC--------------cCCCCCHHHHcCCCCCCEEEeeCCC-CCC
Confidence 556666666665 4544443 4556666666666633 2233332 23567777777777775 655
Q ss_pred eccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeecc
Q 044585 84 IWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRL 163 (352)
Q Consensus 84 ~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l 163 (352)
++... + +.+++|++|++++| .+...++. .+..+++|+.|++++|. +..+ +.. .+++|+.|++
T Consensus 138 l~~~~-~--~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~N~-l~~~-~~~-----------~l~~L~~L~l 199 (597)
T 3oja_B 138 LPRGI-F--HNTPKLTTLSMSNN-NLERIEDD-TFQATTSLQNLQLSSNR-LTHV-DLS-----------LIPSLFHANV 199 (597)
T ss_dssp CCTTT-T--TTCTTCCEEECCSS-CCCBCCTT-TTTTCTTCCEEECTTSC-CSBC-CGG-----------GCTTCSEEEC
T ss_pred CCHHH-h--ccCCCCCEEEeeCC-cCCCCChh-hhhcCCcCcEEECcCCC-CCCc-Chh-----------hhhhhhhhhc
Confidence 44332 1 24677777777777 45554442 25567777777777754 2222 111 3444444444
Q ss_pred cccc------------------ccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhh
Q 044585 164 IDLP------------------KLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFL 224 (352)
Q Consensus 164 ~~~~------------------~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~ 224 (352)
+++. .+..++. ..+++|+.|.++++ .++. +.. ...+++|+.|+ +.+.++.+.
T Consensus 200 ~~n~l~~l~~~~~L~~L~ls~n~l~~~~~-----~~~~~L~~L~L~~n-~l~~--~~~-l~~l~~L~~L~Ls~N~l~~~~ 270 (597)
T 3oja_B 200 SYNLLSTLAIPIAVEELDASHNSINVVRG-----PVNVELTILKLQHN-NLTD--TAW-LLNYPGLVEVDLSYNELEKIM 270 (597)
T ss_dssp CSSCCSEEECCTTCSEEECCSSCCCEEEC-----SCCSCCCEEECCSS-CCCC--CGG-GGGCTTCSEEECCSSCCCEEE
T ss_pred ccCccccccCCchhheeeccCCccccccc-----ccCCCCCEEECCCC-CCCC--Chh-hccCCCCCEEECCCCccCCCC
Confidence 3321 1111111 12356777777776 3443 222 33678888887 666665543
Q ss_pred hhcccCCCCCcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCcc
Q 044585 225 LAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHR 304 (352)
Q Consensus 225 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~ 304 (352)
+.. ++.+++|+.|++++ +.++.++... ..+++|+.|++++| .++.+|..+..+++|++|++++|.
T Consensus 271 ~~~--------~~~l~~L~~L~Ls~-N~l~~l~~~~----~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N~- 335 (597)
T 3oja_B 271 YHP--------FVKMQRLERLYISN-NRLVALNLYG----QPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS- 335 (597)
T ss_dssp SGG--------GTTCSSCCEEECTT-SCCCEEECSS----SCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC-
T ss_pred HHH--------hcCccCCCEEECCC-CCCCCCCccc----ccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCCC-
Confidence 332 45678899999988 4666665443 36788999999887 566787777788899999997774
Q ss_pred ccccccccccCccccccEEEEeccc
Q 044585 305 LINLLTLSTSRSLIILQSMTIADCK 329 (352)
Q Consensus 305 l~~~~~~~~~~~l~~L~~L~i~~c~ 329 (352)
++.++ +..+++|+.|++++++
T Consensus 336 l~~~~----~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 336 IVTLK----LSTHHTLKNLTLSHND 356 (597)
T ss_dssp CCCCC----CCTTCCCSEEECCSSC
T ss_pred CCCcC----hhhcCCCCEEEeeCCC
Confidence 45553 4557789999998865
No 22
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.81 E-value=2.5e-18 Score=173.27 Aligned_cols=69 Identities=14% Similarity=0.205 Sum_probs=37.5
Q ss_pred ceeeeccCccceeEeccCCCcce-eccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCC
Q 044585 61 YEVMIGFRDIEHLQLSHFPRLRE-IWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCD 133 (352)
Q Consensus 61 ~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~ 133 (352)
|..+.++++|++|++++|. ++. .+....+ +.+++|++|++++| .+....+...+.++++|++|++++|.
T Consensus 90 p~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~--~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 90 PDAFQGLFHLFELRLYFCG-LSDAVLKDGYF--RNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp TTSSCSCSSCCCEECTTCC-CSSCCSTTCCC--SSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred HhHccCCcccCEeeCcCCC-CCcccccCccc--cccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCCc
Confidence 4455566666666666665 432 2221101 34667777777766 34443332335567777777776653
No 23
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.80 E-value=9.4e-19 Score=164.79 Aligned_cols=80 Identities=24% Similarity=0.290 Sum_probs=51.0
Q ss_pred cccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCccccccccccccCc
Q 044585 237 LTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTSRS 316 (352)
Q Consensus 237 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 316 (352)
..+++|++|+++++ .++.++. + ..+++|+.|++++| .++.++. +..+++|++|++++| .+++.++ ...
T Consensus 262 ~~l~~L~~L~l~~n-~l~~~~~--~---~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~---~~~ 329 (466)
T 1o6v_A 262 SGLTKLTELKLGAN-QISNISP--L---AGLTALTNLELNEN-QLEDISP-ISNLKNLTYLTLYFN-NISDISP---VSS 329 (466)
T ss_dssp TTCTTCSEEECCSS-CCCCCGG--G---TTCTTCSEEECCSS-CCSCCGG-GGGCTTCSEEECCSS-CCSCCGG---GGG
T ss_pred hcCCCCCEEECCCC-ccCcccc--c---cCCCccCeEEcCCC-cccCchh-hcCCCCCCEEECcCC-cCCCchh---hcc
Confidence 44566666666663 4444432 2 46677777777776 3455543 567788888888776 4455433 456
Q ss_pred cccccEEEEecc
Q 044585 317 LIILQSMTIADC 328 (352)
Q Consensus 317 l~~L~~L~i~~c 328 (352)
+++|+.|++++|
T Consensus 330 l~~L~~L~l~~n 341 (466)
T 1o6v_A 330 LTKLQRLFFYNN 341 (466)
T ss_dssp CTTCCEEECCSS
T ss_pred CccCCEeECCCC
Confidence 778888888877
No 24
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.80 E-value=2.1e-19 Score=179.58 Aligned_cols=279 Identities=11% Similarity=0.090 Sum_probs=175.4
Q ss_pred eecCCccEEeccccccceE------------------eccCCC--CCCCceEEEecccccCcceeecCccchhhhhhcee
Q 044585 4 LEFPSLEQVSMTHCPNMKT------------------FSRGIS--STPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEV 63 (352)
Q Consensus 4 ~~l~~L~~L~l~~~~~l~~------------------l~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~ 63 (352)
.++++|++|++.+| .++. +|..++ .+++|++|++++ |.....+|..
T Consensus 445 ~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~-------------N~l~~~iP~~ 510 (876)
T 4ecn_A 445 QRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYN-------------CPNMTQLPDF 510 (876)
T ss_dssp GGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEES-------------CTTCCSCCGG
T ss_pred hcCCCCCEEECcCC-cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcC-------------CCCCccChHH
Confidence 46899999999999 5776 888887 999999999994 4445567777
Q ss_pred eeccCccceeEeccCCCcce--eccCCC-C--CCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCccee
Q 044585 64 MIGFRDIEHLQLSHFPRLRE--IWHGQA-V--PVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEV 138 (352)
Q Consensus 64 ~~~~~~L~~L~l~~~~~l~~--~~~~~~-l--~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 138 (352)
+..+++|+.|+++++..++. +|.... + ....+++|++|++++| .+...+....+..+++|+.|++++|.. ..+
T Consensus 511 l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~l~~L~~L~~L~Ls~N~l-~~l 588 (876)
T 4ecn_A 511 LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHNKV-RHL 588 (876)
T ss_dssp GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHHHTTCTTCCEEECTTSCC-CBC
T ss_pred HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCccCChhhhhcCCCCCEEECCCCCc-ccc
Confidence 78888888888888763432 322110 0 0023568888888887 455433212467788888888888653 344
Q ss_pred eeeccccccccccCCCCcccCeeccccccccccccccCCceeeccC-cceEeeccCCCCcccccchhhhcc--CCCCCCC
Q 044585 139 LHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSE-LENLTIENCPDMETFISNSVVHVT--TNNKEPQ 215 (352)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~-L~~L~l~~c~~l~~~~~~~~~~~~--~~L~~L~ 215 (352)
+.+. .+++|+.|+++++. +..++. .+..+++ |+.|.++++. ++.+ |..+. .. ++|+.|+
T Consensus 589 p~~~-----------~L~~L~~L~Ls~N~-l~~lp~---~l~~l~~~L~~L~Ls~N~-L~~l-p~~~~-~~~~~~L~~L~ 650 (876)
T 4ecn_A 589 EAFG-----------TNVKLTDLKLDYNQ-IEEIPE---DFCAFTDQVEGLGFSHNK-LKYI-PNIFN-AKSVYVMGSVD 650 (876)
T ss_dssp CCCC-----------TTSEESEEECCSSC-CSCCCT---TSCEECTTCCEEECCSSC-CCSC-CSCCC-TTCSSCEEEEE
T ss_pred hhhc-----------CCCcceEEECcCCc-cccchH---HHhhccccCCEEECcCCC-CCcC-chhhh-ccccCCCCEEE
Confidence 3222 56677777776654 233332 3455565 6666666663 3333 33221 11 2244444
Q ss_pred -CC-----------------------------CccchhhhhcccCCCCCcccccCCcceeecccccccccccccccccc-
Q 044585 216 -KL-----------------------------TSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESN- 264 (352)
Q Consensus 216 -~~-----------------------------~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~- 264 (352)
+. +.++.++... +..+++|+.|+++++ .++.++...+...
T Consensus 651 Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~--------~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~ 721 (876)
T 4ecn_A 651 FSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTEL--------FATGSPISTIILSNN-LMTSIPENSLKPKD 721 (876)
T ss_dssp CCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHH--------HHTTCCCSEEECCSC-CCSCCCTTSSSCTT
T ss_pred CcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHH--------HccCCCCCEEECCCC-cCCccChHHhcccc
Confidence 32 3333222111 124678888888884 6666765543100
Q ss_pred ---cccCCcceEEEecCCCcccccCCcc--CCCCCcEEeecCCccccccccccccCccccccEEEEeccc
Q 044585 265 ---KAFANLKSLEIFECSKLQKLVPASW--HLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIADCK 329 (352)
Q Consensus 265 ---~~~~~L~~L~l~~c~~l~~l~~~~~--~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 329 (352)
..+++|+.|++++| .++.+|..+. .+++|++|++++| .++.+|. .+..+++|+.|++++++
T Consensus 722 ~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~--~l~~L~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 722 GNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPT--QPLNSSQLKAFGIRHQR 787 (876)
T ss_dssp SCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSS-CCSSCCC--GGGGCTTCCEEECCCCB
T ss_pred ccccccCCccEEECCCC-CCccchHHhhhccCCCcCEEEeCCC-CCCccch--hhhcCCCCCEEECCCCC
Confidence 12238999999888 6678887766 8899999999776 4555643 34578889999998743
No 25
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.80 E-value=1.2e-18 Score=168.94 Aligned_cols=253 Identities=16% Similarity=0.151 Sum_probs=177.1
Q ss_pred eeecCCccEEeccccccceEeccC-CCCCCCceEEEecccccCcceeecCccchhhhhhceee-eccCccceeEeccCCC
Q 044585 3 TLEFPSLEQVSMTHCPNMKTFSRG-ISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVM-IGFRDIEHLQLSHFPR 80 (352)
Q Consensus 3 ~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~L~~L~l~~~~~ 80 (352)
...+++|++|++.+| .++.++.. +..+++|++|++++| .+..+|..+ ..+++|++|+++++.
T Consensus 95 ~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n--------------~l~~l~~~~~~~l~~L~~L~Ls~N~- 158 (597)
T 3oja_B 95 FAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERN--------------DLSSLPRGIFHNTPKLTTLSMSNNN- 158 (597)
T ss_dssp TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS--------------CCCCCCTTTTTTCTTCCEEECCSSC-
T ss_pred hcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCEEEeeCC--------------CCCCCCHHHhccCCCCCEEEeeCCc-
Confidence 345889999999999 67766654 578999999999954 344555443 578999999999887
Q ss_pred cceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeee---cccc----ccccccCC
Q 044585 81 LREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHL---EELN----AKEEHIGP 153 (352)
Q Consensus 81 l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~---~~~~----~~~~~~~~ 153 (352)
++.++... + +.+++|++|++++| .+.... +..+++|+.|+++++. +..+... ..+. ........
T Consensus 159 l~~~~~~~-~--~~l~~L~~L~L~~N-~l~~~~----~~~l~~L~~L~l~~n~-l~~l~~~~~L~~L~ls~n~l~~~~~~ 229 (597)
T 3oja_B 159 LERIEDDT-F--QATTSLQNLQLSSN-RLTHVD----LSLIPSLFHANVSYNL-LSTLAIPIAVEELDASHNSINVVRGP 229 (597)
T ss_dssp CCBCCTTT-T--TTCTTCCEEECTTS-CCSBCC----GGGCTTCSEEECCSSC-CSEEECCTTCSEEECCSSCCCEEECS
T ss_pred CCCCChhh-h--hcCCcCcEEECcCC-CCCCcC----hhhhhhhhhhhcccCc-cccccCCchhheeeccCCcccccccc
Confidence 66544332 2 35889999999988 455542 3357788888887753 3322110 0000 00111111
Q ss_pred CCcccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCC
Q 044585 154 RFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPL 232 (352)
Q Consensus 154 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~ 232 (352)
..++|+.|+++++. +... ..+..+++|+.|+++++ .+..+.|..+. .+++|+.|+ +.+.++.++..
T Consensus 230 ~~~~L~~L~L~~n~-l~~~----~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~l~~~------ 296 (597)
T 3oja_B 230 VNVELTILKLQHNN-LTDT----AWLLNYPGLVEVDLSYN-ELEKIMYHPFV-KMQRLERLYISNNRLVALNLY------ 296 (597)
T ss_dssp CCSCCCEEECCSSC-CCCC----GGGGGCTTCSEEECCSS-CCCEEESGGGT-TCSSCCEEECTTSCCCEEECS------
T ss_pred cCCCCCEEECCCCC-CCCC----hhhccCCCCCEEECCCC-ccCCCCHHHhc-CccCCCEEECCCCCCCCCCcc------
Confidence 45689999998874 3332 14677899999999998 56666555554 889999999 77777765433
Q ss_pred CCcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCcc
Q 044585 233 FDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHR 304 (352)
Q Consensus 233 ~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~ 304 (352)
.+.+++|+.|+++++ .++.++... ..+++|+.|++++| .+..++ +..+++|+.|++++++-
T Consensus 297 ---~~~l~~L~~L~Ls~N-~l~~i~~~~----~~l~~L~~L~L~~N-~l~~~~--~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 297 ---GQPIPTLKVLDLSHN-HLLHVERNQ----PQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp ---SSCCTTCCEEECCSS-CCCCCGGGH----HHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSCE
T ss_pred ---cccCCCCcEEECCCC-CCCccCccc----ccCCCCCEEECCCC-CCCCcC--hhhcCCCCEEEeeCCCC
Confidence 245799999999995 666776543 47899999999998 456664 56889999999988764
No 26
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.80 E-value=1.9e-18 Score=167.91 Aligned_cols=87 Identities=21% Similarity=0.191 Sum_probs=47.4
Q ss_pred cccCCcceeecccccccccccccccccccccCCcceEEEecCCCcc-cccCCccCCCCCcEEeecCCccccccccccccC
Q 044585 237 LTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQ-KLVPASWHLENLEALKVSKCHRLINLLTLSTSR 315 (352)
Q Consensus 237 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 315 (352)
..+++|++|++++|. ++......+ ..+++|++|++++|.... .+|..+..+++|++|++++| .++..++ ..+.
T Consensus 421 ~~l~~L~~L~l~~n~-l~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~ 494 (606)
T 3vq2_A 421 LSLEKLLYLDISYTN-TKIDFDGIF---LGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQISW-GVFD 494 (606)
T ss_dssp TTCTTCCEEECTTSC-CEECCTTTT---TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECT-TTTT
T ss_pred hccccCCEEECcCCC-CCccchhhh---cCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC-cCCccCh-hhhc
Confidence 344555555555542 232222223 455666666666663222 14555666677777777666 3444433 2345
Q ss_pred ccccccEEEEeccc
Q 044585 316 SLIILQSMTIADCK 329 (352)
Q Consensus 316 ~l~~L~~L~i~~c~ 329 (352)
.+++|+.|++++|.
T Consensus 495 ~l~~L~~L~Ls~N~ 508 (606)
T 3vq2_A 495 TLHRLQLLNMSHNN 508 (606)
T ss_dssp TCTTCCEEECCSSC
T ss_pred ccccCCEEECCCCc
Confidence 66777777777764
No 27
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.79 E-value=2.9e-18 Score=154.12 Aligned_cols=269 Identities=13% Similarity=0.139 Sum_probs=186.4
Q ss_pred cCCccEEeccccccceEecc-CCCCCCCceEEEecccccCcceeecCccchhhhhh-ceeeeccCccceeEeccCCCcce
Q 044585 6 FPSLEQVSMTHCPNMKTFSR-GISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKC-YEVMIGFRDIEHLQLSHFPRLRE 83 (352)
Q Consensus 6 l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~ 83 (352)
.+++++|++.+| .++.++. .+..+++|++|++++| .+..+ |..+..+++|++|+++++. ++.
T Consensus 51 ~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n--------------~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~ 114 (330)
T 1xku_A 51 PPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINN--------------KISKISPGAFAPLVKLERLYLSKNQ-LKE 114 (330)
T ss_dssp CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSS--------------CCCCBCTTTTTTCTTCCEEECCSSC-CSB
T ss_pred CCCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCC--------------cCCeeCHHHhcCCCCCCEEECCCCc-CCc
Confidence 368999999998 6777765 5788999999999954 23333 4556688999999999887 766
Q ss_pred eccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeecc
Q 044585 84 IWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRL 163 (352)
Q Consensus 84 ~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l 163 (352)
++.. .+++|++|++++| .+....+ ..+..+++|+.|++++|..-.. ......+. .+++|+.|++
T Consensus 115 l~~~------~~~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~-------~~~~~~~~-~l~~L~~L~l 178 (330)
T 1xku_A 115 LPEK------MPKTLQELRVHEN-EITKVRK-SVFNGLNQMIVVELGTNPLKSS-------GIENGAFQ-GMKKLSYIRI 178 (330)
T ss_dssp CCSS------CCTTCCEEECCSS-CCCBBCH-HHHTTCTTCCEEECCSSCCCGG-------GBCTTGGG-GCTTCCEEEC
T ss_pred cChh------hcccccEEECCCC-cccccCH-hHhcCCccccEEECCCCcCCcc-------CcChhhcc-CCCCcCEEEC
Confidence 4443 3579999999998 5665443 4477899999999998754211 00011122 6889999999
Q ss_pred ccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCc
Q 044585 164 IDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQL 242 (352)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L 242 (352)
+++. ++.++.. .+++|+.|+++++ .++.+.+..+ ..+++|+.|+ ..+.++.+.... +..+++|
T Consensus 179 ~~n~-l~~l~~~-----~~~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~--------~~~l~~L 242 (330)
T 1xku_A 179 ADTN-ITTIPQG-----LPPSLTELHLDGN-KITKVDAASL-KGLNNLAKLGLSFNSISAVDNGS--------LANTPHL 242 (330)
T ss_dssp CSSC-CCSCCSS-----CCTTCSEEECTTS-CCCEECTGGG-TTCTTCCEEECCSSCCCEECTTT--------GGGSTTC
T ss_pred CCCc-cccCCcc-----ccccCCEEECCCC-cCCccCHHHh-cCCCCCCEEECCCCcCceeChhh--------ccCCCCC
Confidence 8764 4444331 2379999999988 4666544444 4788999998 666666554321 4668899
Q ss_pred ceeecccccccccccccccccccccCCcceEEEecCCCcccccCC-cc------CCCCCcEEeecCCccccccccccccC
Q 044585 243 KELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPA-SW------HLENLEALKVSKCHRLINLLTLSTSR 315 (352)
Q Consensus 243 ~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~------~~~~L~~L~l~~c~~l~~~~~~~~~~ 315 (352)
++|+++++ .++.++... ..+++|+.|+++++ .++.++.. +. ..+.|+.+++.+++..........+.
T Consensus 243 ~~L~L~~N-~l~~lp~~l----~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~ 316 (330)
T 1xku_A 243 RELHLNNN-KLVKVPGGL----ADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR 316 (330)
T ss_dssp CEEECCSS-CCSSCCTTT----TTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGT
T ss_pred CEEECCCC-cCccCChhh----ccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCcccccccCccccc
Confidence 99999995 677776543 47899999999988 56666532 21 24788999998886533222224566
Q ss_pred ccccccEEEEecc
Q 044585 316 SLIILQSMTIADC 328 (352)
Q Consensus 316 ~l~~L~~L~i~~c 328 (352)
.+.+++.++++++
T Consensus 317 ~~~~l~~l~L~~N 329 (330)
T 1xku_A 317 CVYVRAAVQLGNY 329 (330)
T ss_dssp TCCCGGGEEC---
T ss_pred cccceeEEEeccc
Confidence 7788888888765
No 28
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.79 E-value=9.6e-19 Score=164.04 Aligned_cols=141 Identities=13% Similarity=0.147 Sum_probs=85.4
Q ss_pred ecCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCccee
Q 044585 5 EFPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREI 84 (352)
Q Consensus 5 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~ 84 (352)
++++|++|++.+| .++.+| .+..+++|++|++++|.+.+ ++ +..+++|++|+++++. ++.+
T Consensus 40 ~l~~L~~L~Ls~n-~l~~~~-~l~~l~~L~~L~Ls~n~l~~--------------~~--~~~l~~L~~L~Ls~N~-l~~~ 100 (457)
T 3bz5_A 40 QLATLTSLDCHNS-SITDMT-GIEKLTGLTKLICTSNNITT--------------LD--LSQNTNLTYLACDSNK-LTNL 100 (457)
T ss_dssp HHTTCCEEECCSS-CCCCCT-TGGGCTTCSEEECCSSCCSC--------------CC--CTTCTTCSEEECCSSC-CSCC
T ss_pred HcCCCCEEEccCC-CcccCh-hhcccCCCCEEEccCCcCCe--------------Ec--cccCCCCCEEECcCCC-Ccee
Confidence 4789999999998 777776 57889999999999654433 22 4456777777777665 5543
Q ss_pred ccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccc
Q 044585 85 WHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLI 164 (352)
Q Consensus 85 ~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 164 (352)
+ . +.+++|++|++++| .+... + +..+++|++|++++|. ++.+ ++. .+++|+.|+++
T Consensus 101 ~--~----~~l~~L~~L~L~~N-~l~~l-~---~~~l~~L~~L~l~~N~-l~~l-~l~-----------~l~~L~~L~l~ 156 (457)
T 3bz5_A 101 D--V----TPLTKLTYLNCDTN-KLTKL-D---VSQNPLLTYLNCARNT-LTEI-DVS-----------HNTQLTELDCH 156 (457)
T ss_dssp C--C----TTCTTCCEEECCSS-CCSCC-C---CTTCTTCCEEECTTSC-CSCC-CCT-----------TCTTCCEEECT
T ss_pred e--c----CCCCcCCEEECCCC-cCCee-c---CCCCCcCCEEECCCCc-ccee-ccc-----------cCCcCCEEECC
Confidence 2 1 34667777777776 44443 2 3456677777776654 2222 111 45555555555
Q ss_pred cccccccccccCCceeeccCcceEeeccC
Q 044585 165 DLPKLKRFCNFTGNIIELSELENLTIENC 193 (352)
Q Consensus 165 ~~~~l~~~~~~~~~~~~~~~L~~L~l~~c 193 (352)
++..+..+ .+..+++|+.|+++++
T Consensus 157 ~n~~~~~~-----~~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 157 LNKKITKL-----DVTPQTQLTTLDCSFN 180 (457)
T ss_dssp TCSCCCCC-----CCTTCTTCCEEECCSS
T ss_pred CCCccccc-----ccccCCcCCEEECCCC
Confidence 55443333 1233455555555554
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.79 E-value=1.9e-18 Score=162.74 Aligned_cols=269 Identities=16% Similarity=0.233 Sum_probs=148.0
Q ss_pred ecCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCccee
Q 044585 5 EFPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREI 84 (352)
Q Consensus 5 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~ 84 (352)
.+++|++|++.+| .++.++. +..+++|++|++++|.+.... . +..+++|++|+++++. ++..
T Consensus 66 ~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~l~~n~l~~~~--------------~-~~~l~~L~~L~L~~n~-l~~~ 127 (466)
T 1o6v_A 66 YLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQIADIT--------------P-LANLTNLTGLTLFNNQ-ITDI 127 (466)
T ss_dssp GCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCG--------------G-GTTCTTCCEEECCSSC-CCCC
T ss_pred hhcCCCEEECCCC-ccCCchh-hhccccCCEEECCCCccccCh--------------h-hcCCCCCCEEECCCCC-CCCC
Confidence 4788999999888 6777766 778888888888865433322 1 3344444444444443 3322
Q ss_pred ccCCCCCCCCCCCccEEEEecCCCCcccCCc------------------hhhhcCCCCcEEEEccCCCcceeeeeccccc
Q 044585 85 WHGQAVPVSFFNNLRQLAVDDCTNMSSAIPT------------------NLLRCLNNLRCLEVRNCDLIEEVLHLEELNA 146 (352)
Q Consensus 85 ~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~------------------~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 146 (352)
+. . ..+++|++|++++| .+...... ..+..+++|++|++++|. +..+..+.....
T Consensus 128 ~~-~----~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~ 200 (466)
T 1o6v_A 128 DP-L----KNLTNLNRLELSSN-TISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDISVLAKLTN 200 (466)
T ss_dssp GG-G----TTCTTCSEEEEEEE-EECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-CCCCGGGGGCTT
T ss_pred hH-H----cCCCCCCEEECCCC-ccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc-CCCChhhccCCC
Confidence 11 0 12344444444433 12211100 012344445555554433 111111100000
Q ss_pred ----------c--ccccCCCCcccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCC
Q 044585 147 ----------K--EEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEP 214 (352)
Q Consensus 147 ----------~--~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L 214 (352)
. ...++ .+++|+.|+++++. ++.+ +.+..+++|+.|++++| .++...+ ...+++|+.|
T Consensus 201 L~~L~l~~n~l~~~~~~~-~l~~L~~L~l~~n~-l~~~----~~l~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L 270 (466)
T 1o6v_A 201 LESLIATNNQISDITPLG-ILTNLDELSLNGNQ-LKDI----GTLASLTNLTDLDLANN-QISNLAP---LSGLTKLTEL 270 (466)
T ss_dssp CSEEECCSSCCCCCGGGG-GCTTCCEEECCSSC-CCCC----GGGGGCTTCSEEECCSS-CCCCCGG---GTTCTTCSEE
T ss_pred CCEEEecCCccccccccc-ccCCCCEEECCCCC-cccc----hhhhcCCCCCEEECCCC-ccccchh---hhcCCCCCEE
Confidence 0 00001 34444444444432 2211 12344566666666665 3333322 3355666666
Q ss_pred C-CCCccchhhhhcccCCCCCcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCC
Q 044585 215 Q-KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLEN 293 (352)
Q Consensus 215 ~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~ 293 (352)
+ ..+.++.+.. +..+++|+.|+++++ .++.++. + ..+++|+.|++++| .++.++. +..+++
T Consensus 271 ~l~~n~l~~~~~----------~~~l~~L~~L~L~~n-~l~~~~~--~---~~l~~L~~L~L~~n-~l~~~~~-~~~l~~ 332 (466)
T 1o6v_A 271 KLGANQISNISP----------LAGLTALTNLELNEN-QLEDISP--I---SNLKNLTYLTLYFN-NISDISP-VSSLTK 332 (466)
T ss_dssp ECCSSCCCCCGG----------GTTCTTCSEEECCSS-CCSCCGG--G---GGCTTCSEEECCSS-CCSCCGG-GGGCTT
T ss_pred ECCCCccCcccc----------ccCCCccCeEEcCCC-cccCchh--h---cCCCCCCEEECcCC-cCCCchh-hccCcc
Confidence 6 4444443322 456789999999995 5665553 3 58899999999998 4565554 578999
Q ss_pred CcEEeecCCccccccccccccCccccccEEEEecccc
Q 044585 294 LEALKVSKCHRLINLLTLSTSRSLIILQSMTIADCKR 330 (352)
Q Consensus 294 L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~ 330 (352)
|++|++++| .++.++ ....+++|+.|++++|..
T Consensus 333 L~~L~l~~n-~l~~~~---~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 333 LQRLFFYNN-KVSDVS---SLANLTNINWLSAGHNQI 365 (466)
T ss_dssp CCEEECCSS-CCCCCG---GGTTCTTCCEEECCSSCC
T ss_pred CCEeECCCC-ccCCch---hhccCCCCCEEeCCCCcc
Confidence 999999888 566653 456789999999998853
No 30
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.79 E-value=3.2e-18 Score=153.94 Aligned_cols=269 Identities=14% Similarity=0.146 Sum_probs=188.4
Q ss_pred cCCccEEeccccccceEecc-CCCCCCCceEEEecccccCcceeecCccchhhhhh-ceeeeccCccceeEeccCCCcce
Q 044585 6 FPSLEQVSMTHCPNMKTFSR-GISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKC-YEVMIGFRDIEHLQLSHFPRLRE 83 (352)
Q Consensus 6 l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~ 83 (352)
.++|++|++.+| .++.++. .+..+++|++|++++| .+..+ |..+..+++|++|+++++. ++.
T Consensus 53 ~~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n--------------~l~~~~~~~~~~l~~L~~L~L~~n~-l~~ 116 (332)
T 2ft3_A 53 SPDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNN--------------KISKIHEKAFSPLRKLQKLYISKNH-LVE 116 (332)
T ss_dssp CTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS--------------CCCEECGGGSTTCTTCCEEECCSSC-CCS
T ss_pred CCCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCC--------------ccCccCHhHhhCcCCCCEEECCCCc-CCc
Confidence 468999999998 6777754 6789999999999954 23333 4556789999999999887 766
Q ss_pred eccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeecc
Q 044585 84 IWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRL 163 (352)
Q Consensus 84 ~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l 163 (352)
++... +++|++|++++| .+...++ ..+..+++|++|+++++..-.. . .....+. .+ +|+.|++
T Consensus 117 l~~~~------~~~L~~L~l~~n-~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~--~-----~~~~~~~-~l-~L~~L~l 179 (332)
T 2ft3_A 117 IPPNL------PSSLVELRIHDN-RIRKVPK-GVFSGLRNMNCIEMGGNPLENS--G-----FEPGAFD-GL-KLNYLRI 179 (332)
T ss_dssp CCSSC------CTTCCEEECCSS-CCCCCCS-GGGSSCSSCCEEECCSCCCBGG--G-----SCTTSSC-SC-CCSCCBC
T ss_pred cCccc------cccCCEEECCCC-ccCccCH-hHhCCCccCCEEECCCCccccC--C-----CCccccc-CC-ccCEEEC
Confidence 44433 489999999998 5665443 4467899999999998753210 0 0001111 34 8899999
Q ss_pred ccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCc
Q 044585 164 IDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQL 242 (352)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L 242 (352)
+++. ++.++.. .+++|++|+++++ .++.+.+..+ ..+++|+.|+ ..+.++.+.... +..+++|
T Consensus 180 ~~n~-l~~l~~~-----~~~~L~~L~l~~n-~i~~~~~~~l-~~l~~L~~L~L~~N~l~~~~~~~--------~~~l~~L 243 (332)
T 2ft3_A 180 SEAK-LTGIPKD-----LPETLNELHLDHN-KIQAIELEDL-LRYSKLYRLGLGHNQIRMIENGS--------LSFLPTL 243 (332)
T ss_dssp CSSB-CSSCCSS-----SCSSCSCCBCCSS-CCCCCCTTSS-TTCTTCSCCBCCSSCCCCCCTTG--------GGGCTTC
T ss_pred cCCC-CCccCcc-----ccCCCCEEECCCC-cCCccCHHHh-cCCCCCCEEECCCCcCCcCChhH--------hhCCCCC
Confidence 8764 4444332 2379999999987 5666534444 4789999999 767776654322 4668999
Q ss_pred ceeecccccccccccccccccccccCCcceEEEecCCCcccccCC-cc------CCCCCcEEeecCCccccccccccccC
Q 044585 243 KELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPA-SW------HLENLEALKVSKCHRLINLLTLSTSR 315 (352)
Q Consensus 243 ~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~------~~~~L~~L~l~~c~~l~~~~~~~~~~ 315 (352)
++|+++++ .++.++.. + ..+++|+.|+++++ .++.++.. +. ..++|+.|++.+++..........+.
T Consensus 244 ~~L~L~~N-~l~~lp~~-l---~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~ 317 (332)
T 2ft3_A 244 RELHLDNN-KLSRVPAG-L---PDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFR 317 (332)
T ss_dssp CEEECCSS-CCCBCCTT-G---GGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGT
T ss_pred CEEECCCC-cCeecChh-h---hcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcccccccCccccc
Confidence 99999994 77777765 3 58899999999997 56666532 22 25789999999887542222334677
Q ss_pred ccccccEEEEeccc
Q 044585 316 SLIILQSMTIADCK 329 (352)
Q Consensus 316 ~l~~L~~L~i~~c~ 329 (352)
.+++|+.+++.++.
T Consensus 318 ~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 318 CVTDRLAIQFGNYK 331 (332)
T ss_dssp TBCCSTTEEC----
T ss_pred ccchhhhhhccccc
Confidence 88999999998875
No 31
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=3.1e-19 Score=161.98 Aligned_cols=279 Identities=13% Similarity=0.141 Sum_probs=169.2
Q ss_pred ecCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhce-eeeccCccceeEeccCCCcce
Q 044585 5 EFPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYE-VMIGFRDIEHLQLSHFPRLRE 83 (352)
Q Consensus 5 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~ 83 (352)
.|+.....+..++ +++.+|..+ .++|++|+++++ .+..++. .+..+++|++|+++++. ++.
T Consensus 29 ~C~~~~~c~~~~~-~l~~iP~~~--~~~L~~L~l~~n--------------~i~~~~~~~~~~l~~L~~L~L~~n~-l~~ 90 (353)
T 2z80_A 29 SCDRNGICKGSSG-SLNSIPSGL--TEAVKSLDLSNN--------------RITYISNSDLQRCVNLQALVLTSNG-INT 90 (353)
T ss_dssp EECTTSEEECCST-TCSSCCTTC--CTTCCEEECTTS--------------CCCEECTTTTTTCTTCCEEECTTSC-CCE
T ss_pred CCCCCeEeeCCCC-Ccccccccc--cccCcEEECCCC--------------cCcccCHHHhccCCCCCEEECCCCc-cCc
Confidence 4566666666655 677777655 358888888843 2333333 34577888888888776 665
Q ss_pred eccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeecc
Q 044585 84 IWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRL 163 (352)
Q Consensus 84 ~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l 163 (352)
+.... + +.+++|++|++++| .+...+ ...+..+++|++|++++|. ++.++... .+. .+++|+.|++
T Consensus 91 ~~~~~-~--~~l~~L~~L~Ls~n-~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~l~~~~-------~~~-~l~~L~~L~l 156 (353)
T 2z80_A 91 IEEDS-F--SSLGSLEHLDLSYN-YLSNLS-SSWFKPLSSLTFLNLLGNP-YKTLGETS-------LFS-HLTKLQILRV 156 (353)
T ss_dssp ECTTT-T--TTCTTCCEEECCSS-CCSSCC-HHHHTTCTTCSEEECTTCC-CSSSCSSC-------SCT-TCTTCCEEEE
T ss_pred cCHhh-c--CCCCCCCEEECCCC-cCCcCC-HhHhCCCccCCEEECCCCC-CcccCchh-------hhc-cCCCCcEEEC
Confidence 54332 2 35778888888887 455543 3336678888888888764 33332200 111 6778888888
Q ss_pred ccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCc
Q 044585 164 IDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQL 242 (352)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L 242 (352)
+++..++.+... .+..+++|++|+++++ .++...+..+. .+++|++|+ ..+.++.+.... ...+++|
T Consensus 157 ~~n~~~~~~~~~--~~~~l~~L~~L~l~~n-~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~--------~~~~~~L 224 (353)
T 2z80_A 157 GNMDTFTKIQRK--DFAGLTFLEELEIDAS-DLQSYEPKSLK-SIQNVSHLILHMKQHILLLEIF--------VDVTSSV 224 (353)
T ss_dssp EESSSCCEECTT--TTTTCCEEEEEEEEET-TCCEECTTTTT-TCSEEEEEEEECSCSTTHHHHH--------HHHTTTE
T ss_pred CCCccccccCHH--HccCCCCCCEEECCCC-CcCccCHHHHh-ccccCCeecCCCCccccchhhh--------hhhcccc
Confidence 877555544321 3456778888888877 45554344443 677777777 555555444321 2346788
Q ss_pred ceeecccccccccccccccccccccCCcceEEEecCCC----cccccCCccCCCCCcEEeecCCccccccccccccCccc
Q 044585 243 KELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSK----LQKLVPASWHLENLEALKVSKCHRLINLLTLSTSRSLI 318 (352)
Q Consensus 243 ~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~----l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~ 318 (352)
++|+++++ .++.++...++.....+.++.+++.++.- +..+|..+..+++|++|+++++ +++.++. .++..++
T Consensus 225 ~~L~L~~n-~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~-~~~~~l~ 301 (353)
T 2z80_A 225 ECLELRDT-DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPD-GIFDRLT 301 (353)
T ss_dssp EEEEEESC-BCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCT-TTTTTCT
T ss_pred cEEECCCC-ccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCH-HHHhcCC
Confidence 88888884 55554433332223456677777776531 1235555667788888888666 5566643 3456677
Q ss_pred cccEEEEecccc
Q 044585 319 ILQSMTIADCKR 330 (352)
Q Consensus 319 ~L~~L~i~~c~~ 330 (352)
+|++|++++++-
T Consensus 302 ~L~~L~L~~N~~ 313 (353)
T 2z80_A 302 SLQKIWLHTNPW 313 (353)
T ss_dssp TCCEEECCSSCB
T ss_pred CCCEEEeeCCCc
Confidence 888888887653
No 32
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.79 E-value=3.4e-18 Score=168.37 Aligned_cols=236 Identities=13% Similarity=0.103 Sum_probs=150.1
Q ss_pred CccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeecccccc
Q 044585 68 RDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAK 147 (352)
Q Consensus 68 ~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 147 (352)
+.|+.|+++++. ++.+.... + ..+++|++|++++| .+....+...+..+++|++|++++|. +..+..
T Consensus 381 ~~L~~L~L~~n~-l~~~~~~~-~--~~l~~L~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~------- 447 (680)
T 1ziw_A 381 SPLHILNLTKNK-ISKIESDA-F--SWLGHLEVLDLGLN-EIGQELTGQEWRGLENIFEIYLSYNK-YLQLTR------- 447 (680)
T ss_dssp SCCCEEECTTSC-CCEECTTT-T--TTCTTCCEEECCSS-CCEEECCSGGGTTCTTCCEEECCSCS-EEECCT-------
T ss_pred CcCceEECCCCC-CCeEChhh-h--hCCCCCCEEeCCCC-cCccccCcccccCcccccEEecCCCC-cceeCh-------
Confidence 355666666554 44332222 1 24667777777776 34333333335567777777777764 222110
Q ss_pred ccccCCCCcccCeeccccccc--cccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhh
Q 044585 148 EEHIGPRFPRLNRLRLIDLPK--LKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFL 224 (352)
Q Consensus 148 ~~~~~~~~~~L~~L~l~~~~~--l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~ 224 (352)
..+. .+++|+.|++.++.- +...+. .+..+++|+.|+++++ .++.+ +...+..+++|+.|+ +.+.++.+.
T Consensus 448 -~~~~-~~~~L~~L~l~~n~l~~~~~~p~---~~~~l~~L~~L~Ls~N-~l~~i-~~~~~~~l~~L~~L~Ls~N~l~~~~ 520 (680)
T 1ziw_A 448 -NSFA-LVPSLQRLMLRRVALKNVDSSPS---PFQPLRNLTILDLSNN-NIANI-NDDMLEGLEKLEILDLQHNNLARLW 520 (680)
T ss_dssp -TTTT-TCTTCCEEECTTSCCBCTTCSSC---TTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSCCGGGG
T ss_pred -hhhh-cCcccccchhccccccccccCCc---ccccCCCCCEEECCCC-CCCcC-ChhhhccccccCEEeCCCCCccccc
Confidence 1112 577888888876542 111121 4567889999999887 56665 444445788999998 777776653
Q ss_pred hhcccCCCCCcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCC-ccCCCCCcEEeecCCc
Q 044585 225 LAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPA-SWHLENLEALKVSKCH 303 (352)
Q Consensus 225 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~c~ 303 (352)
...........++.+++|+.|++++ +.++.++...+ ..+++|+.|+++++ .++.+|.. +..+++|++|+++++
T Consensus 521 ~~~~~~~~~~~~~~l~~L~~L~L~~-N~l~~i~~~~~---~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N- 594 (680)
T 1ziw_A 521 KHANPGGPIYFLKGLSHLHILNLES-NGFDEIPVEVF---KDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKN- 594 (680)
T ss_dssp STTSTTSCCCTTTTCTTCCEEECCS-SCCCCCCTTTT---TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS-
T ss_pred hhhccCCcchhhcCCCCCCEEECCC-CCCCCCCHHHc---ccccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCC-
Confidence 3211101112256788999999999 57778887766 68899999999887 67778764 468899999999877
Q ss_pred cccccccccccCccccccEEEEeccc
Q 044585 304 RLINLLTLSTSRSLIILQSMTIADCK 329 (352)
Q Consensus 304 ~l~~~~~~~~~~~l~~L~~L~i~~c~ 329 (352)
+++.+++......+++|+.++++++|
T Consensus 595 ~l~~~~~~~~~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 595 LITSVEKKVFGPAFRNLTELDMRFNP 620 (680)
T ss_dssp CCCBCCHHHHHHHHTTCSEEECTTCC
T ss_pred cCCccChhHhcccccccCEEEccCCC
Confidence 67776543222257889999998744
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.79 E-value=1.2e-18 Score=163.48 Aligned_cols=263 Identities=13% Similarity=0.070 Sum_probs=136.9
Q ss_pred eecCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcce
Q 044585 4 LEFPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLRE 83 (352)
Q Consensus 4 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~ 83 (352)
..+++|++|++.+| .++.++ +..+++|++|++++|.+.+. + +..+++|++|+++++. ++.
T Consensus 61 ~~l~~L~~L~Ls~n-~l~~~~--~~~l~~L~~L~Ls~N~l~~~--------------~--~~~l~~L~~L~L~~N~-l~~ 120 (457)
T 3bz5_A 61 EKLTGLTKLICTSN-NITTLD--LSQNTNLTYLACDSNKLTNL--------------D--VTPLTKLTYLNCDTNK-LTK 120 (457)
T ss_dssp GGCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSSCCSCC--------------C--CTTCTTCCEEECCSSC-CSC
T ss_pred cccCCCCEEEccCC-cCCeEc--cccCCCCCEEECcCCCCcee--------------e--cCCCCcCCEEECCCCc-CCe
Confidence 45789999999998 677775 77899999999996543332 2 4466777777777765 554
Q ss_pred eccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeecc
Q 044585 84 IWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRL 163 (352)
Q Consensus 84 ~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l 163 (352)
++ . +.+++|++|++++| .+... + +..+++|++|++++|..+..+ .+. .+++|+.|++
T Consensus 121 l~--~----~~l~~L~~L~l~~N-~l~~l-~---l~~l~~L~~L~l~~n~~~~~~-~~~-----------~l~~L~~L~l 177 (457)
T 3bz5_A 121 LD--V----SQNPLLTYLNCARN-TLTEI-D---VSHNTQLTELDCHLNKKITKL-DVT-----------PQTQLTTLDC 177 (457)
T ss_dssp CC--C----TTCTTCCEEECTTS-CCSCC-C---CTTCTTCCEEECTTCSCCCCC-CCT-----------TCTTCCEEEC
T ss_pred ec--C----CCCCcCCEEECCCC-cccee-c---cccCCcCCEEECCCCCccccc-ccc-----------cCCcCCEEEC
Confidence 33 1 34667777777766 34443 2 335666777777666544332 111 3444444444
Q ss_pred ccccccccccccC----------------CceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhh
Q 044585 164 IDLPKLKRFCNFT----------------GNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLA 226 (352)
Q Consensus 164 ~~~~~l~~~~~~~----------------~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~ 226 (352)
+++. ++.++... ..+..+++|+.|+++++ .++.+ | ...+++|+.|+ ..+.++.++..
T Consensus 178 s~n~-l~~l~l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N-~l~~i-p---~~~l~~L~~L~l~~N~l~~~~~~ 251 (457)
T 3bz5_A 178 SFNK-ITELDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSN-KLTEI-D---VTPLTQLTYFDCSVNPLTELDVS 251 (457)
T ss_dssp CSSC-CCCCCCTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSS-CCSCC-C---CTTCTTCSEEECCSSCCSCCCCT
T ss_pred CCCc-cceeccccCCCCCEEECcCCcCCeeccccCCCCCEEECcCC-ccccc-C---ccccCCCCEEEeeCCcCCCcCHH
Confidence 4331 22211000 01334455556655555 33332 3 22455555555 44444433211
Q ss_pred cccCCCCCccc-ccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccC--------CccCCCCCcEE
Q 044585 227 HQVQPLFDEKL-TFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVP--------ASWHLENLEAL 297 (352)
Q Consensus 227 ~~~~~~~~~~~-~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--------~~~~~~~L~~L 297 (352)
. . ..++.+. ...+|+.|++++|..+..++. ..+++|+.|++++|..++.+|. .+..+++|++|
T Consensus 252 ~-l-~~L~~L~l~~n~L~~L~l~~n~~~~~~~~------~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L 323 (457)
T 3bz5_A 252 T-L-SKLTTLHCIQTDLLEIDLTHNTQLIYFQA------EGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYL 323 (457)
T ss_dssp T-C-TTCCEEECTTCCCSCCCCTTCTTCCEEEC------TTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEE
T ss_pred H-C-CCCCEEeccCCCCCEEECCCCccCCcccc------cccccCCEEECCCCcccceeccCCCcceEechhhcccCCEE
Confidence 0 0 0000000 001334444444443333331 2457777777777765555542 12344556666
Q ss_pred eecCCccccccccccccCccccccEEEEecc
Q 044585 298 KVSKCHRLINLLTLSTSRSLIILQSMTIADC 328 (352)
Q Consensus 298 ~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c 328 (352)
+++++ +++.++ ...+++|+.|+++++
T Consensus 324 ~L~~N-~l~~l~----l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 324 YLNNT-ELTELD----VSHNTKLKSLSCVNA 349 (457)
T ss_dssp ECTTC-CCSCCC----CTTCTTCSEEECCSS
T ss_pred ECCCC-cccccc----cccCCcCcEEECCCC
Confidence 66443 344431 445677777777664
No 34
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.79 E-value=3.7e-19 Score=158.77 Aligned_cols=234 Identities=15% Similarity=0.064 Sum_probs=114.8
Q ss_pred hceeeeccCccceeEeccCCCcc-eeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCccee
Q 044585 60 CYEVMIGFRDIEHLQLSHFPRLR-EIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEV 138 (352)
Q Consensus 60 l~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 138 (352)
+|..+..+++|++|+++++..+. .++... +.+++|++|++++| .+....|.. +..+++|++|++++|.....+
T Consensus 68 ~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l----~~l~~L~~L~Ls~n-~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~ 141 (313)
T 1ogq_A 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAI----AKLTQLHYLYITHT-NVSGAIPDF-LSQIKTLVTLDFSYNALSGTL 141 (313)
T ss_dssp CCGGGGGCTTCSEEEEEEETTEESCCCGGG----GGCTTCSEEEEEEE-CCEEECCGG-GGGCTTCCEEECCSSEEESCC
T ss_pred cChhHhCCCCCCeeeCCCCCcccccCChhH----hcCCCCCEEECcCC-eeCCcCCHH-HhCCCCCCEEeCCCCccCCcC
Confidence 34444455555555555322132 212111 23455555555554 333223322 444555555555554322111
Q ss_pred eeeccccccccccCCCCcccCeeccccccccccccccCCceeecc-CcceEeeccCCCCcccccchhhhccCCCCCCC-C
Q 044585 139 LHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELS-ELENLTIENCPDMETFISNSVVHVTTNNKEPQ-K 216 (352)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~-~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~ 216 (352)
+.. +. .+++|++|+++++.-...++. .+..++ +|+.|+++++ .++...|..+. .++ |+.|+ .
T Consensus 142 p~~---------~~-~l~~L~~L~L~~N~l~~~~p~---~l~~l~~~L~~L~L~~N-~l~~~~~~~~~-~l~-L~~L~Ls 205 (313)
T 1ogq_A 142 PPS---------IS-SLPNLVGITFDGNRISGAIPD---SYGSFSKLFTSMTISRN-RLTGKIPPTFA-NLN-LAFVDLS 205 (313)
T ss_dssp CGG---------GG-GCTTCCEEECCSSCCEEECCG---GGGCCCTTCCEEECCSS-EEEEECCGGGG-GCC-CSEEECC
T ss_pred ChH---------Hh-cCCCCCeEECcCCcccCcCCH---HHhhhhhcCcEEECcCC-eeeccCChHHh-CCc-ccEEECc
Confidence 110 11 455555555554432112221 233333 5555655555 23322233332 333 55555 4
Q ss_pred CCccchhhhhcccCCCCCcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcE
Q 044585 217 LTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEA 296 (352)
Q Consensus 217 ~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~ 296 (352)
.+.++...... ++.+++|+.|+++++ .++..... + ..+++|++|+++++.-...+|..+..+++|++
T Consensus 206 ~N~l~~~~~~~--------~~~l~~L~~L~L~~N-~l~~~~~~-~---~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 272 (313)
T 1ogq_A 206 RNMLEGDASVL--------FGSDKNTQKIHLAKN-SLAFDLGK-V---GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS 272 (313)
T ss_dssp SSEEEECCGGG--------CCTTSCCSEEECCSS-EECCBGGG-C---CCCTTCCEEECCSSCCEECCCGGGGGCTTCCE
T ss_pred CCcccCcCCHH--------HhcCCCCCEEECCCC-ceeeecCc-c---cccCCCCEEECcCCcccCcCChHHhcCcCCCE
Confidence 44444322221 345677888888874 33332222 2 46678888888877433366667777888888
Q ss_pred EeecCCccccccccccccCccccccEEEEeccccc
Q 044585 297 LKVSKCHRLINLLTLSTSRSLIILQSMTIADCKRI 331 (352)
Q Consensus 297 L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l 331 (352)
|++++++--..+|. ...+++|+.+++.+++.+
T Consensus 273 L~Ls~N~l~~~ip~---~~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 273 LNVSFNNLCGEIPQ---GGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp EECCSSEEEEECCC---STTGGGSCGGGTCSSSEE
T ss_pred EECcCCcccccCCC---CccccccChHHhcCCCCc
Confidence 88877744334433 155677777777777644
No 35
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.79 E-value=2.2e-18 Score=165.55 Aligned_cols=107 Identities=20% Similarity=0.175 Sum_probs=63.3
Q ss_pred CcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhh-cccCCCCCcccccCCcceeecccccccccccc--c
Q 044585 184 ELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLA-HQVQPLFDEKLTFPQLKELKLSRLHKVQHLWK--E 259 (352)
Q Consensus 184 ~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~ 259 (352)
+|+.|.++++ .++.+ |..+...+++|+.|+ +.+.++..... ... ++.+++|++|+++++ .++.++. .
T Consensus 311 ~L~~L~l~~n-~l~~i-p~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------~~~l~~L~~L~Ls~N-~l~~~~~~~~ 381 (549)
T 2z81_A 311 KVKRITVENS-KVFLV-PCSFSQHLKSLEFLDLSENLMVEEYLKNSAC------KGAWPSLQTLVLSQN-HLRSMQKTGE 381 (549)
T ss_dssp TCCEEEEESS-CCCCC-CHHHHHHCTTCCEEECCSSCCCHHHHHHHTC------TTSSTTCCEEECTTS-CCCCHHHHHH
T ss_pred cceEEEeccC-ccccC-CHHHHhcCccccEEEccCCccccccccchhh------hhccccCcEEEccCC-cccccccchh
Confidence 4555555554 23333 555555678888887 55555543321 111 245677888888774 5554432 2
Q ss_pred ccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCc
Q 044585 260 NDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCH 303 (352)
Q Consensus 260 ~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~ 303 (352)
.+ ..+++|++|++++| +++.+|..+..+++|++|++++|.
T Consensus 382 ~~---~~l~~L~~L~Ls~N-~l~~lp~~~~~~~~L~~L~Ls~N~ 421 (549)
T 2z81_A 382 IL---LTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSSTG 421 (549)
T ss_dssp HG---GGCTTCCEEECTTC-CCCCCCSCCCCCTTCCEEECTTSC
T ss_pred hh---hcCCCCCEEECCCC-CCccCChhhcccccccEEECCCCC
Confidence 22 46777788888777 566777666667777777776653
No 36
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.78 E-value=3.5e-18 Score=163.03 Aligned_cols=83 Identities=18% Similarity=0.163 Sum_probs=52.1
Q ss_pred ccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCccccccccccccCcc
Q 044585 238 TFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTSRSL 317 (352)
Q Consensus 238 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l 317 (352)
.+++|++|+++++..-...+ .. ..++|+.|++++| +++.+|..+..+++|++|++++| +++.++.. .+..+
T Consensus 397 ~l~~L~~L~Ls~N~l~~~~~-~~-----l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~-~~~~l 467 (520)
T 2z7x_B 397 WTKSLLSLNMSSNILTDTIF-RC-----LPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPDG-IFDRL 467 (520)
T ss_dssp CCTTCCEEECCSSCCCGGGG-GS-----CCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTT-TTTTC
T ss_pred cCccCCEEECcCCCCCcchh-hh-----hcccCCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCHH-HhccC
Confidence 34556666666542222222 11 1257777777776 56677776667888888888776 56666443 45667
Q ss_pred ccccEEEEeccc
Q 044585 318 IILQSMTIADCK 329 (352)
Q Consensus 318 ~~L~~L~i~~c~ 329 (352)
++|+.|++++++
T Consensus 468 ~~L~~L~l~~N~ 479 (520)
T 2z7x_B 468 TSLQKIWLHTNP 479 (520)
T ss_dssp TTCCEEECCSSC
T ss_pred CcccEEECcCCC
Confidence 888888888765
No 37
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.77 E-value=1.1e-17 Score=159.66 Aligned_cols=89 Identities=15% Similarity=0.142 Sum_probs=55.4
Q ss_pred cccCCcceeeccccccccc-ccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCccccccccccccC
Q 044585 237 LTFPQLKELKLSRLHKVQH-LWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTSR 315 (352)
Q Consensus 237 ~~~~~L~~L~l~~~~~l~~-l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 315 (352)
+.+++|++|+++++ .++. ++...+ ..+++|+.|++++|.-...+|..+. ++|++|++++| +++.++. .+ .
T Consensus 371 ~~l~~L~~L~Ls~N-~l~~~l~~~~~---~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N-~l~~ip~-~~-~ 441 (520)
T 2z7x_B 371 TQMKSLQQLDISQN-SVSYDEKKGDC---SWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSN-KIKSIPK-QV-V 441 (520)
T ss_dssp TTCTTCCEEECCSS-CCBCCGGGCSC---CCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSS-CCCCCCG-GG-G
T ss_pred hhCCCCCEEECCCC-cCCcccccchh---ccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCC-cccccch-hh-h
Confidence 45667777777774 3443 554444 4667777777777743334443322 68888888766 5566643 22 3
Q ss_pred ccccccEEEEecccccceec
Q 044585 316 SLIILQSMTIADCKRIEEII 335 (352)
Q Consensus 316 ~l~~L~~L~i~~c~~l~~~~ 335 (352)
.+++|+.|++++| .++.+.
T Consensus 442 ~l~~L~~L~L~~N-~l~~l~ 460 (520)
T 2z7x_B 442 KLEALQELNVASN-QLKSVP 460 (520)
T ss_dssp GCTTCCEEECCSS-CCCCCC
T ss_pred cCCCCCEEECCCC-cCCccC
Confidence 7888999999887 344443
No 38
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.77 E-value=1.1e-17 Score=161.23 Aligned_cols=59 Identities=20% Similarity=0.252 Sum_probs=40.1
Q ss_pred CCcceEEEecCCCcccccCCccCCCCCcEEeecCCccccccccccccCccccccEEEEeccc
Q 044585 268 ANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIADCK 329 (352)
Q Consensus 268 ~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 329 (352)
++|+.|+++++ .++.+|..+..+++|++|+++++ +++.++.. .+..+++|+.|++++++
T Consensus 450 ~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~-~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 450 PKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QLKSVPDG-VFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCCCCCTT-STTTCTTCCCEECCSCC
T ss_pred CcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-CCCCCCHH-HHhcCCCCCEEEecCCC
Confidence 56777777776 56677766667778888888665 55666442 45667778888877754
No 39
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.77 E-value=7e-18 Score=162.64 Aligned_cols=266 Identities=17% Similarity=0.142 Sum_probs=178.8
Q ss_pred cEEeccccccce-EeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceeccCC
Q 044585 10 EQVSMTHCPNMK-TFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWHGQ 88 (352)
Q Consensus 10 ~~L~l~~~~~l~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 88 (352)
+.+.+.++..+. ..+..+..+++|++|+++++ .+..+|..+..+ +|++|+++++. +..
T Consensus 260 ~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~--------------~l~~l~~~~~~~-~L~~L~l~~n~-~~~----- 318 (570)
T 2z63_A 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV--------------TIERVKDFSYNF-GWQHLELVNCK-FGQ----- 318 (570)
T ss_dssp EEEEEEETTEEESCSTTTTGGGTTCSEEEEESC--------------EECSCCBCCSCC-CCSEEEEESCB-CSS-----
T ss_pred hhhhhhcchhhhhhchhhhcCcCcccEEEecCc--------------cchhhhhhhccC-CccEEeeccCc-ccc-----
Confidence 444454443332 34455667889999999843 344566666677 89999999887 554
Q ss_pred CCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccccc
Q 044585 89 AVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPK 168 (352)
Q Consensus 89 ~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 168 (352)
+|...+++|++|++.+|. .....+. ..+++|++|++++|.. ....... ..+. .+++|+.|+++++.
T Consensus 319 -l~~~~l~~L~~L~l~~n~-~~~~~~~---~~~~~L~~L~l~~n~l-~~~~~~~------~~~~-~~~~L~~L~l~~n~- 384 (570)
T 2z63_A 319 -FPTLKLKSLKRLTFTSNK-GGNAFSE---VDLPSLEFLDLSRNGL-SFKGCCS------QSDF-GTTSLKYLDLSFNG- 384 (570)
T ss_dssp -CCBCBCSSCCEEEEESCB-SCCBCCC---CBCTTCCEEECCSSCC-BEEEEEE------HHHH-TCSCCCEEECCSCS-
T ss_pred -cCcccccccCEEeCcCCc-ccccccc---ccCCCCCEEeCcCCcc-Ccccccc------cccc-ccCccCEEECCCCc-
Confidence 333468899999999884 3333332 4788999999988753 3221100 0111 68899999998874
Q ss_pred cccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCcceeec
Q 044585 169 LKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKELKL 247 (352)
Q Consensus 169 l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l 247 (352)
+..+.. .+..+++|++|+++++. +....+...+..+++|+.|+ ..+.+....... +..+++|++|++
T Consensus 385 l~~~~~---~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--------~~~l~~L~~L~l 452 (570)
T 2z63_A 385 VITMSS---NFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI--------FNGLSSLEVLKM 452 (570)
T ss_dssp EEEEEE---EEETCTTCCEEECTTSE-EESCTTSCTTTTCTTCCEEECTTSCCEECCTTT--------TTTCTTCCEEEC
T ss_pred cccccc---cccccCCCCEEEccCCc-cccccchhhhhcCCCCCEEeCcCCcccccchhh--------hhcCCcCcEEEC
Confidence 333332 35678899999998873 44433434455788888888 555555433221 456789999999
Q ss_pred cccccc-ccccccccccccccCCcceEEEecCCCcccc-cCCccCCCCCcEEeecCCccccccccccccCccccccEEEE
Q 044585 248 SRLHKV-QHLWKENDESNKAFANLKSLEIFECSKLQKL-VPASWHLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTI 325 (352)
Q Consensus 248 ~~~~~l-~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i 325 (352)
++|... ..++ ..+ ..+++|+.|++++|. ++.+ |..+..+++|++|++++| +++.+++ ..+..+++|+.|++
T Consensus 453 ~~n~l~~~~~p-~~~---~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l 525 (570)
T 2z63_A 453 AGNSFQENFLP-DIF---TELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASN-QLKSVPD-GIFDRLTSLQKIWL 525 (570)
T ss_dssp TTCEEGGGEEC-SCC---TTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEEC
T ss_pred cCCcCccccch-hhh---hcccCCCEEECCCCc-cccCChhhhhcccCCCEEeCCCC-cCCCCCH-HHhhcccCCcEEEe
Confidence 996433 2344 333 578999999999984 5555 667788999999999877 5666644 35677899999999
Q ss_pred eccc
Q 044585 326 ADCK 329 (352)
Q Consensus 326 ~~c~ 329 (352)
++++
T Consensus 526 ~~N~ 529 (570)
T 2z63_A 526 HTNP 529 (570)
T ss_dssp CSSC
T ss_pred cCCc
Confidence 9865
No 40
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.76 E-value=1.3e-17 Score=160.73 Aligned_cols=138 Identities=10% Similarity=0.104 Sum_probs=97.9
Q ss_pred eeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCcceeeccccccccc-cc
Q 044585 180 IELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQH-LW 257 (352)
Q Consensus 180 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-l~ 257 (352)
..+++|+.|+++++ .++...|..+ ..+++|+.|+ ..+.++.+...... ++.+++|++|+++++ .++. ++
T Consensus 350 ~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~------~~~l~~L~~L~l~~N-~l~~~~~ 420 (562)
T 3a79_B 350 PSPSSFTFLNFTQN-VFTDSVFQGC-STLKRLQTLILQRNGLKNFFKVALM------TKNMSSLETLDVSLN-SLNSHAY 420 (562)
T ss_dssp SSCCCCCEEECCSS-CCCTTTTTTC-CSCSSCCEEECCSSCCCBTTHHHHT------TTTCTTCCEEECTTS-CCBSCCS
T ss_pred cCCCCceEEECCCC-ccccchhhhh-cccCCCCEEECCCCCcCCcccchhh------hcCCCCCCEEECCCC-cCCCccC
Confidence 56789999999998 4555445554 3788999998 66677654321111 356789999999995 4555 77
Q ss_pred ccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCccccccccccccCccccccEEEEecccccceec
Q 044585 258 KENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIADCKRIEEII 335 (352)
Q Consensus 258 ~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~ 335 (352)
...+ ..+++|+.|++++|.-...+|..+. ++|++|++++| +++.++. ... .+++|+.|+++++. ++.+.
T Consensus 421 ~~~~---~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N-~l~~ip~-~~~-~l~~L~~L~L~~N~-l~~l~ 489 (562)
T 3a79_B 421 DRTC---AWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNN-RIMSIPK-DVT-HLQALQELNVASNQ-LKSVP 489 (562)
T ss_dssp SCCC---CCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSS-CCCCCCT-TTT-SSCCCSEEECCSSC-CCCCC
T ss_pred hhhh---cCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCC-cCcccCh-hhc-CCCCCCEEECCCCC-CCCCC
Confidence 6655 6789999999999853344443322 79999999877 6777754 333 78999999999874 44444
No 41
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.75 E-value=3.9e-18 Score=163.78 Aligned_cols=112 Identities=16% Similarity=0.234 Sum_probs=58.3
Q ss_pred CCccEEeccccccceEe-ccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceec
Q 044585 7 PSLEQVSMTHCPNMKTF-SRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIW 85 (352)
Q Consensus 7 ~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~ 85 (352)
++|++|++.+| .++.+ +..+..+++|++|++++|.+.... |..+..+++|++|+++++. ++..+
T Consensus 26 ~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-------------~~~~~~l~~L~~L~Ls~n~-l~~~~ 90 (549)
T 2z81_A 26 AAMKSLDLSFN-KITYIGHGDLRACANLQVLILKSSRINTIE-------------GDAFYSLGSLEHLDLSDNH-LSSLS 90 (549)
T ss_dssp TTCCEEECCSS-CCCEECSSTTSSCTTCCEEECTTSCCCEEC-------------TTTTTTCTTCCEEECTTSC-CCSCC
T ss_pred CCccEEECcCC-ccCccChhhhhcCCcccEEECCCCCcCccC-------------hhhccccccCCEEECCCCc-cCccC
Confidence 57888888887 46655 345677888888888854322211 1233455566666666554 43322
Q ss_pred cCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcce
Q 044585 86 HGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEE 137 (352)
Q Consensus 86 ~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 137 (352)
... + +.+++|++|++++| .+........+..+++|++|++++|..+..
T Consensus 91 ~~~-~--~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~ 138 (549)
T 2z81_A 91 SSW-F--GPLSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSE 138 (549)
T ss_dssp HHH-H--TTCTTCCEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCE
T ss_pred HHH-h--ccCCCCcEEECCCC-cccccchhhhhhccCCccEEECCCCccccc
Confidence 211 1 23555666666555 233221111234555566666655543333
No 42
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.75 E-value=1.2e-17 Score=148.35 Aligned_cols=243 Identities=14% Similarity=0.096 Sum_probs=125.6
Q ss_pred EEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhcee-eeccCccceeEeccCCCcceec---c
Q 044585 11 QVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEV-MIGFRDIEHLQLSHFPRLREIW---H 86 (352)
Q Consensus 11 ~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~~---~ 86 (352)
.++..+. +++.+|..+ .++|++|+++++ .+..+|.. +..+++|++|+++++. ++... .
T Consensus 11 ~l~c~~~-~l~~ip~~~--~~~l~~L~L~~n--------------~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~ 72 (306)
T 2z66_A 11 EIRCNSK-GLTSVPTGI--PSSATRLELESN--------------KLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQ 72 (306)
T ss_dssp EEECCSS-CCSSCCSCC--CTTCCEEECCSS--------------CCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEH
T ss_pred EEEcCCC-CcccCCCCC--CCCCCEEECCCC--------------ccCccCHhHhhccccCCEEECCCCc-cCcccCccc
Confidence 3444443 455555443 356666666632 22333332 2355666666666554 43221 1
Q ss_pred CCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccc
Q 044585 87 GQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDL 166 (352)
Q Consensus 87 ~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 166 (352)
.. ..+++|++|++++| .+...+. . +..+++|++|+++++. +..++.. ..+. .+++|+.|+++++
T Consensus 73 ~~----~~~~~L~~L~Ls~n-~i~~l~~-~-~~~l~~L~~L~l~~n~-l~~~~~~-------~~~~-~l~~L~~L~l~~n 136 (306)
T 2z66_A 73 SD----FGTTSLKYLDLSFN-GVITMSS-N-FLGLEQLEHLDFQHSN-LKQMSEF-------SVFL-SLRNLIYLDISHT 136 (306)
T ss_dssp HH----HSCSCCCEEECCSC-SEEEEEE-E-EETCTTCCEEECTTSE-EESSTTT-------TTTT-TCTTCCEEECTTS
T ss_pred cc----ccccccCEEECCCC-ccccChh-h-cCCCCCCCEEECCCCc-ccccccc-------hhhh-hccCCCEEECCCC
Confidence 11 13456666666665 3333221 1 3456666666666643 2111110 0111 4566666666654
Q ss_pred cccccccccCCceeeccCcceEeeccCCCCcc-cccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCcce
Q 044585 167 PKLKRFCNFTGNIIELSELENLTIENCPDMET-FISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKE 244 (352)
Q Consensus 167 ~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~ 244 (352)
. +...... .+..+++|+.|.++++. +.. ..|..+ ..+++|+.|+ +.+.++.+.... ++.+++|++
T Consensus 137 ~-l~~~~~~--~~~~l~~L~~L~l~~n~-l~~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~--------~~~l~~L~~ 203 (306)
T 2z66_A 137 H-TRVAFNG--IFNGLSSLEVLKMAGNS-FQENFLPDIF-TELRNLTFLDLSQCQLEQLSPTA--------FNSLSSLQV 203 (306)
T ss_dssp C-CEECSTT--TTTTCTTCCEEECTTCE-EGGGEECSCC-TTCTTCCEEECTTSCCCEECTTT--------TTTCTTCCE
T ss_pred c-CCccchh--hcccCcCCCEEECCCCc-cccccchhHH-hhCcCCCEEECCCCCcCCcCHHH--------hcCCCCCCE
Confidence 3 2211110 23445666666666653 222 223332 2556666665 444444432221 345678888
Q ss_pred eecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCC-CCcEEeecCCcc
Q 044585 245 LKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLE-NLEALKVSKCHR 304 (352)
Q Consensus 245 L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~-~L~~L~l~~c~~ 304 (352)
|+++++ .++.++...+ ..+++|+.|+++++.-....+..+..++ +|++|++++++-
T Consensus 204 L~L~~N-~l~~~~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 204 LNMSHN-NFFSLDTFPY---KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp EECTTS-CCSBCCSGGG---TTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred EECCCC-ccCccChhhc---cCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 888884 5666655444 5678888888888844334445566664 888888877754
No 43
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.75 E-value=5.6e-17 Score=159.73 Aligned_cols=134 Identities=15% Similarity=0.152 Sum_probs=81.5
Q ss_pred eccCcceEeeccCCCCc--ccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCcceeeccccccccccc
Q 044585 181 ELSELENLTIENCPDME--TFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLW 257 (352)
Q Consensus 181 ~~~~L~~L~l~~c~~l~--~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 257 (352)
.+++|+.|.+.++. ++ ...|..+ ..+++|+.|+ +.+.++.+.... ++.+++|++|+++++ .++.++
T Consensus 452 ~~~~L~~L~l~~n~-l~~~~~~p~~~-~~l~~L~~L~Ls~N~l~~i~~~~--------~~~l~~L~~L~Ls~N-~l~~~~ 520 (680)
T 1ziw_A 452 LVPSLQRLMLRRVA-LKNVDSSPSPF-QPLRNLTILDLSNNNIANINDDM--------LEGLEKLEILDLQHN-NLARLW 520 (680)
T ss_dssp TCTTCCEEECTTSC-CBCTTCSSCTT-TTCTTCCEEECCSSCCCCCCTTT--------TTTCTTCCEEECCSS-CCGGGG
T ss_pred cCcccccchhcccc-ccccccCCccc-ccCCCCCEEECCCCCCCcCChhh--------hccccccCEEeCCCC-Cccccc
Confidence 34555555555542 11 1113333 2556666666 555555433321 355678888888873 555553
Q ss_pred ccccc-----cccccCCcceEEEecCCCcccccC-CccCCCCCcEEeecCCccccccccccccCccccccEEEEecc
Q 044585 258 KENDE-----SNKAFANLKSLEIFECSKLQKLVP-ASWHLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIADC 328 (352)
Q Consensus 258 ~~~~~-----~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c 328 (352)
...++ ....+++|+.|+++++ .++.+|. .+..+++|++|+++++ +++.+++ ..+..+++|+.|+++++
T Consensus 521 ~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~-~~~~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 521 KHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEVFKDLFELKIIDLGLN-NLNTLPA-SVFNNQVSLKSLNLQKN 594 (680)
T ss_dssp STTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECTTS
T ss_pred hhhccCCcchhhcCCCCCCEEECCCC-CCCCCCHHHcccccCcceeECCCC-CCCcCCH-hHhCCCCCCCEEECCCC
Confidence 32110 0146788888888887 5667775 3678889999999554 6777754 45667888999999887
No 44
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.74 E-value=5.6e-18 Score=151.12 Aligned_cols=251 Identities=13% Similarity=0.099 Sum_probs=171.7
Q ss_pred CCccEEeccccccce---EeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcc-
Q 044585 7 PSLEQVSMTHCPNMK---TFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLR- 82 (352)
Q Consensus 7 ~~L~~L~l~~~~~l~---~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~- 82 (352)
.++++|++.++ .++ .+|..+..+++|++|+++++ +.-...+|..+..+++|++|+++++. ++
T Consensus 50 ~~l~~L~L~~~-~l~~~~~~~~~l~~l~~L~~L~L~~~------------n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~ 115 (313)
T 1ogq_A 50 YRVNNLDLSGL-NLPKPYPIPSSLANLPYLNFLYIGGI------------NNLVGPIPPAIAKLTQLHYLYITHTN-VSG 115 (313)
T ss_dssp CCEEEEEEECC-CCSSCEECCGGGGGCTTCSEEEEEEE------------TTEESCCCGGGGGCTTCSEEEEEEEC-CEE
T ss_pred ceEEEEECCCC-CccCCcccChhHhCCCCCCeeeCCCC------------CcccccCChhHhcCCCCCEEECcCCe-eCC
Confidence 57889999988 454 67888888999999999831 23334567777889999999999887 54
Q ss_pred eeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCc-ccCee
Q 044585 83 EIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFP-RLNRL 161 (352)
Q Consensus 83 ~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~-~L~~L 161 (352)
..+... ..+++|++|++++| .+....|.. +..+++|++|++++|.....++... . .++ +|+.|
T Consensus 116 ~~p~~~----~~l~~L~~L~Ls~N-~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~l---------~-~l~~~L~~L 179 (313)
T 1ogq_A 116 AIPDFL----SQIKTLVTLDFSYN-ALSGTLPPS-ISSLPNLVGITFDGNRISGAIPDSY---------G-SFSKLFTSM 179 (313)
T ss_dssp ECCGGG----GGCTTCCEEECCSS-EEESCCCGG-GGGCTTCCEEECCSSCCEEECCGGG---------G-CCCTTCCEE
T ss_pred cCCHHH----hCCCCCCEEeCCCC-ccCCcCChH-HhcCCCCCeEECcCCcccCcCCHHH---------h-hhhhcCcEE
Confidence 433333 46889999999988 455444433 6788999999999876432332211 1 565 88999
Q ss_pred ccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccC
Q 044585 162 RLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFP 240 (352)
Q Consensus 162 ~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~ 240 (352)
+++++.-...++. .+..++ |+.|+++++ .++...+..+ ..+++|+.|+ ..+.++..... +..++
T Consensus 180 ~L~~N~l~~~~~~---~~~~l~-L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~---------~~~l~ 244 (313)
T 1ogq_A 180 TISRNRLTGKIPP---TFANLN-LAFVDLSRN-MLEGDASVLF-GSDKNTQKIHLAKNSLAFDLGK---------VGLSK 244 (313)
T ss_dssp ECCSSEEEEECCG---GGGGCC-CSEEECCSS-EEEECCGGGC-CTTSCCSEEECCSSEECCBGGG---------CCCCT
T ss_pred ECcCCeeeccCCh---HHhCCc-ccEEECcCC-cccCcCCHHH-hcCCCCCEEECCCCceeeecCc---------ccccC
Confidence 9887653323222 233444 999999887 4554434444 3778888888 66666543333 34578
Q ss_pred Ccceeecccccccc-cccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCcccccc
Q 044585 241 QLKELKLSRLHKVQ-HLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINL 308 (352)
Q Consensus 241 ~L~~L~l~~~~~l~-~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~ 308 (352)
+|++|+++++ .++ .++ ..+ ..+++|+.|+++++.-...+|.. ..+++|+.+++.+++.+...
T Consensus 245 ~L~~L~Ls~N-~l~~~~p-~~l---~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 245 NLNGLDLRNN-RIYGTLP-QGL---TQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp TCCEEECCSS-CCEECCC-GGG---GGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEEST
T ss_pred CCCEEECcCC-cccCcCC-hHH---hcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCC
Confidence 9999999985 444 444 334 57889999999988443356654 78889999999888877654
No 45
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.73 E-value=4.9e-18 Score=154.07 Aligned_cols=257 Identities=15% Similarity=0.162 Sum_probs=178.4
Q ss_pred CCccEEeccccccceEecc-CCCCCCCceEEEecccccCcceeecCccchhhhhh-ceeeeccCccceeEeccCCCccee
Q 044585 7 PSLEQVSMTHCPNMKTFSR-GISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKC-YEVMIGFRDIEHLQLSHFPRLREI 84 (352)
Q Consensus 7 ~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~ 84 (352)
++|++|++.+| .++.++. .+..+++|++|+++++ .+..+ +..+..+++|++|+++++. ++.+
T Consensus 52 ~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n--------------~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~ 115 (353)
T 2z80_A 52 EAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSN--------------GINTIEEDSFSSLGSLEHLDLSYNY-LSNL 115 (353)
T ss_dssp TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS--------------CCCEECTTTTTTCTTCCEEECCSSC-CSSC
T ss_pred ccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCC--------------ccCccCHhhcCCCCCCCEEECCCCc-CCcC
Confidence 58999999998 6887776 6789999999999954 23333 2345678999999999887 6654
Q ss_pred ccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccc
Q 044585 85 WHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLI 164 (352)
Q Consensus 85 ~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 164 (352)
+... + +.+++|++|++++| .+...+....+..+++|++|++++|..++.++.. .+. .+++|+.|+++
T Consensus 116 ~~~~-~--~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~--------~~~-~l~~L~~L~l~ 182 (353)
T 2z80_A 116 SSSW-F--KPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK--------DFA-GLTFLEELEID 182 (353)
T ss_dssp CHHH-H--TTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT--------TTT-TCCEEEEEEEE
T ss_pred CHhH-h--CCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHH--------Hcc-CCCCCCEEECC
Confidence 4331 1 35889999999998 5665544234678999999999998766665321 112 68899999998
Q ss_pred cccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCcc
Q 044585 165 DLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLK 243 (352)
Q Consensus 165 ~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~ 243 (352)
++. +..+... .+..+++|++|+++++. ++.+ +......+++|+.|+ +.+.++...... +......+.++
T Consensus 183 ~n~-l~~~~~~--~l~~l~~L~~L~l~~n~-l~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~-----l~~~~~~~~l~ 252 (353)
T 2z80_A 183 ASD-LQSYEPK--SLKSIQNVSHLILHMKQ-HILL-LEIFVDVTSSVECLELRDTDLDTFHFSE-----LSTGETNSLIK 252 (353)
T ss_dssp ETT-CCEECTT--TTTTCSEEEEEEEECSC-STTH-HHHHHHHTTTEEEEEEESCBCTTCCCC-----------CCCCCC
T ss_pred CCC-cCccCHH--HHhccccCCeecCCCCc-cccc-hhhhhhhcccccEEECCCCccccccccc-----cccccccchhh
Confidence 765 3333211 45678899999999884 5554 556665789999998 666665433221 11122345677
Q ss_pred eeeccccc----ccccccccccccccccCCcceEEEecCCCcccccCCc-cCCCCCcEEeecCCccccc
Q 044585 244 ELKLSRLH----KVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPAS-WHLENLEALKVSKCHRLIN 307 (352)
Q Consensus 244 ~L~l~~~~----~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~~~~L~~L~l~~c~~l~~ 307 (352)
.++++++. .+..++.. + ..+++|+.|+++++ .++.+|..+ ..+++|++|++++++-..+
T Consensus 253 ~l~L~~~~l~~~~l~~l~~~-l---~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 253 KFTFRNVKITDESLFQVMKL-L---NQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp EEEEESCBCCHHHHHHHHHH-H---HTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ccccccccccCcchhhhHHH-H---hcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 77777642 12223322 2 57899999999998 677888764 7899999999988864433
No 46
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.73 E-value=6.4e-17 Score=151.14 Aligned_cols=205 Identities=21% Similarity=0.242 Sum_probs=104.9
Q ss_pred eeccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeecc
Q 044585 64 MIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEE 143 (352)
Q Consensus 64 ~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 143 (352)
+..+++|++|+++++. ++.+.... + ..+++|++|++++| .+...++ ..+..+++|++|++++|. ++.++..
T Consensus 84 ~~~l~~L~~L~Ls~n~-i~~i~~~~-~--~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~N~-i~~~~~~-- 154 (440)
T 3zyj_A 84 FKHLRHLEILQLSRNH-IRTIEIGA-F--NGLANLNTLELFDN-RLTTIPN-GAFVYLSKLKELWLRNNP-IESIPSY-- 154 (440)
T ss_dssp TSSCSSCCEEECCSSC-CCEECGGG-G--TTCSSCCEEECCSS-CCSSCCT-TTSCSCSSCCEEECCSCC-CCEECTT--
T ss_pred hhCCCCCCEEECCCCc-CCccChhh-c--cCCccCCEEECCCC-cCCeeCH-hHhhccccCceeeCCCCc-ccccCHH--
Confidence 3455666666666655 44433222 1 23566666666665 4444332 224456666666666643 3332110
Q ss_pred ccccccccCCCCcccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccch
Q 044585 144 LNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEEN 222 (352)
Q Consensus 144 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~ 222 (352)
.+. .+++|+.|++.++..+..+... .+..+++|+.|+++++ .++.+ |. ...+++|+.|+ +.+.++.
T Consensus 155 ------~~~-~l~~L~~L~l~~~~~l~~i~~~--~~~~l~~L~~L~L~~n-~l~~~-~~--~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 155 ------AFN-RIPSLRRLDLGELKRLSYISEG--AFEGLSNLRYLNLAMC-NLREI-PN--LTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp ------TTT-TCTTCCEEECCCCTTCCEECTT--TTTTCSSCCEEECTTS-CCSSC-CC--CTTCSSCCEEECTTSCCCE
T ss_pred ------Hhh-hCcccCEeCCCCCCCcceeCcc--hhhcccccCeecCCCC-cCccc-cc--cCCCcccCEEECCCCccCc
Confidence 011 4566666666665555443321 2444566666666665 34433 21 22455555555 4444444
Q ss_pred hhhhcccCCCCCcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccC-CccCCCCCcEEeecC
Q 044585 223 FLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVP-ASWHLENLEALKVSK 301 (352)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~ 301 (352)
+.... +..+++|+.|++++ +.++.+....+ ..+++|+.|+++++ .++.++. .+..+++|+.|++++
T Consensus 222 ~~~~~--------~~~l~~L~~L~L~~-n~l~~~~~~~~---~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~ 288 (440)
T 3zyj_A 222 IRPGS--------FQGLMHLQKLWMIQ-SQIQVIERNAF---DNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHH 288 (440)
T ss_dssp ECTTT--------TTTCTTCCEEECTT-CCCCEECTTSS---TTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCS
T ss_pred cChhh--------hccCccCCEEECCC-CceeEEChhhh---cCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCC
Confidence 33221 34456666666666 35555554444 45666666666665 4454443 234566666666655
Q ss_pred Cc
Q 044585 302 CH 303 (352)
Q Consensus 302 c~ 303 (352)
++
T Consensus 289 Np 290 (440)
T 3zyj_A 289 NP 290 (440)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 47
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.73 E-value=1.1e-16 Score=161.22 Aligned_cols=276 Identities=16% Similarity=0.159 Sum_probs=170.5
Q ss_pred cCCccEEeccccccceEe-ccCCCCCCCceEEEecccccCcceeecCccchhhhhh-ceeeeccCccceeEeccCCCcce
Q 044585 6 FPSLEQVSMTHCPNMKTF-SRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKC-YEVMIGFRDIEHLQLSHFPRLRE 83 (352)
Q Consensus 6 l~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~ 83 (352)
.+++++|++.+| .++.+ +..+..+++|++|++++| ..+..+ |..+.++++|++|+++++. +..
T Consensus 23 p~~l~~LdLs~N-~i~~i~~~~~~~l~~L~~LdLs~n-------------~~~~~i~~~~f~~L~~L~~L~Ls~N~-l~~ 87 (844)
T 3j0a_A 23 LNTTERLLLSFN-YIRTVTASSFPFLEQLQLLELGSQ-------------YTPLTIDKEAFRNLPNLRILDLGSSK-IYF 87 (844)
T ss_dssp CTTCCEEEEESC-CCCEECSSSCSSCCSCSEEEECTT-------------CCCCEECTTTTSSCTTCCEEECTTCC-CCE
T ss_pred CCCcCEEECCCC-cCCccChhHCcccccCeEEeCCCC-------------CCccccCHHHhcCCCCCCEEECCCCc-Ccc
Confidence 478999999998 66655 567889999999999943 234444 4566789999999999987 666
Q ss_pred eccCCCCCCCCCCCccEEEEecCCCCccc-CCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeec
Q 044585 84 IWHGQAVPVSFFNNLRQLAVDDCTNMSSA-IPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLR 162 (352)
Q Consensus 84 ~~~~~~l~~~~l~~L~~L~l~~c~~l~~~-~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~ 162 (352)
..... + +.+++|++|++++| .+... +....+..+++|++|++++|......+. ..++ .+++|+.|+
T Consensus 88 ~~p~~-~--~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~--------~~~~-~L~~L~~L~ 154 (844)
T 3j0a_A 88 LHPDA-F--QGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH--------PSFG-KLNSLKSID 154 (844)
T ss_dssp ECTTS-S--CSCSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCC--------GGGG-TCSSCCEEE
T ss_pred cCHhH-c--cCCcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCCcccccccc--------hhHh-hCCCCCEEE
Confidence 53332 2 46899999999998 45543 3333367899999999999764322111 0112 678888888
Q ss_pred cccccccccccccCCceeec--cCcceEeeccCCCCcccccchhhhccC------CCCCCC-C-----------------
Q 044585 163 LIDLPKLKRFCNFTGNIIEL--SELENLTIENCPDMETFISNSVVHVTT------NNKEPQ-K----------------- 216 (352)
Q Consensus 163 l~~~~~l~~~~~~~~~~~~~--~~L~~L~l~~c~~l~~~~~~~~~~~~~------~L~~L~-~----------------- 216 (352)
++++. +...... .+..+ ++|+.|.++++.- ....+..+. .++ +|+.|+ +
T Consensus 155 Ls~N~-i~~~~~~--~l~~l~~~~L~~L~L~~n~l-~~~~~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~ 229 (844)
T 3j0a_A 155 FSSNQ-IFLVCEH--ELEPLQGKTLSFFSLAANSL-YSRVSVDWG-KCMNPFRNMVLEILDVSGNGWTVDITGNFSNAIS 229 (844)
T ss_dssp EESSC-CCCCCSG--GGHHHHHCSSCCCEECCSBS-CCCCCCCCC-SSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSC
T ss_pred CCCCc-CCeeCHH--HcccccCCccceEECCCCcc-ccccccchh-hcCCccccCceeEEecCCCcCchhHHHHHHhhcC
Confidence 87653 2211110 12222 4455555544421 111111111 111 133333 1
Q ss_pred ---------------------------------------------CCccchhhhhcccCCCCCcccccCCcceeeccccc
Q 044585 217 ---------------------------------------------LTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLH 251 (352)
Q Consensus 217 ---------------------------------------------~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 251 (352)
.+.+..+.. ..++.+++|+.|++++ +
T Consensus 230 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~L~L~~-n 300 (844)
T 3j0a_A 230 KSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS--------RVFETLKDLKVLNLAY-N 300 (844)
T ss_dssp SCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECS--------CCSSSCCCCCEEEEES-C
T ss_pred cccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccCh--------hhhhcCCCCCEEECCC-C
Confidence 111111110 1144567777777777 3
Q ss_pred ccccccccccccccccCCcceEEEecCCCcccc-cCCccCCCCCcEEeecCCccccccccccccCccccccEEEEeccc
Q 044585 252 KVQHLWKENDESNKAFANLKSLEIFECSKLQKL-VPASWHLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIADCK 329 (352)
Q Consensus 252 ~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 329 (352)
.++.++...+ ..+++|+.|+++++. ++.+ +..+..+++|++|+++++ .++.+++ ..+..+++|+.|+++++.
T Consensus 301 ~i~~~~~~~~---~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~-~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 301 KINKIADEAF---YGLDNLQVLNLSYNL-LGELYSSNFYGLPKVAYIDLQKN-HIAIIQD-QTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp CCCEECTTTT---TTCSSCCEEEEESCC-CSCCCSCSCSSCTTCCEEECCSC-CCCCCCS-SCSCSCCCCCEEEEETCC
T ss_pred cCCCCChHHh---cCCCCCCEEECCCCC-CCccCHHHhcCCCCCCEEECCCC-CCCccCh-hhhcCCCCCCEEECCCCC
Confidence 5555555555 577888888888874 4444 556778888999999777 5666643 356778899999999874
No 48
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.73 E-value=1.5e-16 Score=153.97 Aligned_cols=242 Identities=14% Similarity=0.124 Sum_probs=144.1
Q ss_pred CccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceeccC
Q 044585 8 SLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWHG 87 (352)
Q Consensus 8 ~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~ 87 (352)
++++|++.++ .++.+|..+. ++|++|++++| .+..+|. .+++|++|++++|. ++.
T Consensus 41 ~l~~L~ls~n-~L~~lp~~l~--~~L~~L~L~~N--------------~l~~lp~---~l~~L~~L~Ls~N~-l~~---- 95 (622)
T 3g06_A 41 GNAVLNVGES-GLTTLPDCLP--AHITTLVIPDN--------------NLTSLPA---LPPELRTLEVSGNQ-LTS---- 95 (622)
T ss_dssp CCCEEECCSS-CCSCCCSCCC--TTCSEEEECSC--------------CCSCCCC---CCTTCCEEEECSCC-CSC----
T ss_pred CCcEEEecCC-CcCccChhhC--CCCcEEEecCC--------------CCCCCCC---cCCCCCEEEcCCCc-CCc----
Confidence 5778888877 6777777664 78888888843 3334444 45677777777765 554
Q ss_pred CCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeecccccc
Q 044585 88 QAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLP 167 (352)
Q Consensus 88 ~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 167 (352)
+|. .+++|++|++++| .+...+. .+++|+.|++++|. +..++. .+++|+.|+++++.
T Consensus 96 --lp~-~l~~L~~L~Ls~N-~l~~l~~-----~l~~L~~L~L~~N~-l~~lp~-------------~l~~L~~L~Ls~N~ 152 (622)
T 3g06_A 96 --LPV-LPPGLLELSIFSN-PLTHLPA-----LPSGLCKLWIFGNQ-LTSLPV-------------LPPGLQELSVSDNQ 152 (622)
T ss_dssp --CCC-CCTTCCEEEECSC-CCCCCCC-----CCTTCCEEECCSSC-CSCCCC-------------CCTTCCEEECCSSC
T ss_pred --CCC-CCCCCCEEECcCC-cCCCCCC-----CCCCcCEEECCCCC-CCcCCC-------------CCCCCCEEECcCCc
Confidence 332 4567777777776 4444332 35566667666653 322211 23455555555442
Q ss_pred ccccccccCCce--------------eeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCC
Q 044585 168 KLKRFCNFTGNI--------------IELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPL 232 (352)
Q Consensus 168 ~l~~~~~~~~~~--------------~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~ 232 (352)
++.++.....+ ..+++|+.|+++++ .++.+ |. ..++|+.|+ ..+.++.++
T Consensus 153 -l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N-~l~~l-~~----~~~~L~~L~L~~N~l~~l~-------- 217 (622)
T 3g06_A 153 -LASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDN-QLASL-PT----LPSELYKLWAYNNRLTSLP-------- 217 (622)
T ss_dssp -CSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS-CCSCC-CC----CCTTCCEEECCSSCCSSCC--------
T ss_pred -CCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCC-CCCCC-CC----ccchhhEEECcCCcccccC--------
Confidence 22221100000 12355555655554 33332 21 124555554 333333222
Q ss_pred CCcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCcccccccccc
Q 044585 233 FDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTLS 312 (352)
Q Consensus 233 ~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 312 (352)
..+++|+.|+++++ .++.++ ..+++|+.|++++| .++.+|. .+++|++|++++| +++.+|.
T Consensus 218 ----~~~~~L~~L~Ls~N-~L~~lp-------~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~-- 278 (622)
T 3g06_A 218 ----ALPSGLKELIVSGN-RLTSLP-------VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRN-QLTRLPE-- 278 (622)
T ss_dssp ----CCCTTCCEEECCSS-CCSCCC-------CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCCSCCG--
T ss_pred ----CCCCCCCEEEccCC-ccCcCC-------CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCC-CCCcCCH--
Confidence 12468899999884 667665 35688999999987 6777775 6789999999777 6667753
Q ss_pred ccCccccccEEEEeccccc
Q 044585 313 TSRSLIILQSMTIADCKRI 331 (352)
Q Consensus 313 ~~~~l~~L~~L~i~~c~~l 331 (352)
.+..+++|+.|++++++.-
T Consensus 279 ~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 279 SLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp GGGGSCTTCEEECCSCCCC
T ss_pred HHhhccccCEEEecCCCCC
Confidence 3667889999999988643
No 49
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.73 E-value=1.1e-16 Score=150.04 Aligned_cols=242 Identities=21% Similarity=0.228 Sum_probs=140.5
Q ss_pred cEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhh-ceeeeccCccceeEeccCCCcceeccCC
Q 044585 10 EQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKC-YEVMIGFRDIEHLQLSHFPRLREIWHGQ 88 (352)
Q Consensus 10 ~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 88 (352)
+.++..+. +++.+|..+ .+++++|+++++ .+..+ +..+..+++|++|+++++. ++.+....
T Consensus 57 ~~v~c~~~-~l~~iP~~~--~~~l~~L~L~~n--------------~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~ 118 (452)
T 3zyi_A 57 SKVVCTRR-GLSEVPQGI--PSNTRYLNLMEN--------------NIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGA 118 (452)
T ss_dssp CEEECCSS-CCSSCCSCC--CTTCSEEECCSS--------------CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTT
T ss_pred cEEEECCC-CcCccCCCC--CCCccEEECcCC--------------cCceECHHHcCCCCCCCEEECCCCc-cCCcChhh
Confidence 34444333 455566544 357777777743 22222 2334567777777777765 55544332
Q ss_pred CCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccccc
Q 044585 89 AVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPK 168 (352)
Q Consensus 89 ~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 168 (352)
+ ..+++|++|++++| .+...++ ..+..+++|++|++++|. ++.++. ..+. .+++|+.|++.++..
T Consensus 119 -~--~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~--------~~~~-~l~~L~~L~l~~~~~ 183 (452)
T 3zyi_A 119 -F--NGLASLNTLELFDN-WLTVIPS-GAFEYLSKLRELWLRNNP-IESIPS--------YAFN-RVPSLMRLDLGELKK 183 (452)
T ss_dssp -T--TTCTTCCEEECCSS-CCSBCCT-TTSSSCTTCCEEECCSCC-CCEECT--------TTTT-TCTTCCEEECCCCTT
T ss_pred -c--cCcccCCEEECCCC-cCCccCh-hhhcccCCCCEEECCCCC-cceeCH--------hHHh-cCCcccEEeCCCCCC
Confidence 2 24677777777776 4554433 335567777777777754 333321 0111 567777777777666
Q ss_pred cccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCcceeec
Q 044585 169 LKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKELKL 247 (352)
Q Consensus 169 l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l 247 (352)
++.+... .+..+++|+.|+++++ .++.+ |. ...+++|+.|+ +.+.++.+.... +..+++|+.|++
T Consensus 184 l~~i~~~--~~~~l~~L~~L~L~~n-~l~~~-~~--~~~l~~L~~L~Ls~N~l~~~~~~~--------~~~l~~L~~L~L 249 (452)
T 3zyi_A 184 LEYISEG--AFEGLFNLKYLNLGMC-NIKDM-PN--LTPLVGLEELEMSGNHFPEIRPGS--------FHGLSSLKKLWV 249 (452)
T ss_dssp CCEECTT--TTTTCTTCCEEECTTS-CCSSC-CC--CTTCTTCCEEECTTSCCSEECGGG--------GTTCTTCCEEEC
T ss_pred ccccChh--hccCCCCCCEEECCCC-ccccc-cc--ccccccccEEECcCCcCcccCccc--------ccCccCCCEEEe
Confidence 6654332 2455677777777776 44443 21 23556666666 555555543322 355677777777
Q ss_pred ccccccccccccccccccccCCcceEEEecCCCcccccC-CccCCCCCcEEeecCCc
Q 044585 248 SRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVP-ASWHLENLEALKVSKCH 303 (352)
Q Consensus 248 ~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~ 303 (352)
++ +.++.+....+ ..+++|+.|+++++ .++.++. .+..+++|++|++.+++
T Consensus 250 ~~-n~l~~~~~~~~---~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 250 MN-SQVSLIERNAF---DGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TT-SCCCEECTTTT---TTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CC-CcCceECHHHh---cCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 77 35565555555 56677777777776 4555553 34567777777776654
No 50
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.73 E-value=8.9e-17 Score=150.69 Aligned_cols=237 Identities=14% Similarity=0.150 Sum_probs=177.5
Q ss_pred chhhhhhceeeeccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCC
Q 044585 54 NSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCD 133 (352)
Q Consensus 54 ~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~ 133 (352)
+..+..+|..+. +++++|+++++. ++.+.... + ..+++|++|++++| .+....+. .+..+++|++|++++|.
T Consensus 63 ~~~l~~iP~~~~--~~l~~L~L~~n~-i~~~~~~~-~--~~l~~L~~L~Ls~n-~i~~~~~~-~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 63 RRGLSEVPQGIP--SNTRYLNLMENN-IQMIQADT-F--RHLHHLEVLQLGRN-SIRQIEVG-AFNGLASLNTLELFDNW 134 (452)
T ss_dssp SSCCSSCCSCCC--TTCSEEECCSSC-CCEECTTT-T--TTCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSSC
T ss_pred CCCcCccCCCCC--CCccEEECcCCc-CceECHHH-c--CCCCCCCEEECCCC-ccCCcChh-hccCcccCCEEECCCCc
Confidence 345566675443 789999999987 77664443 3 36899999999998 56665543 37789999999999975
Q ss_pred CcceeeeeccccccccccCCCCcccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCC
Q 044585 134 LIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKE 213 (352)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~ 213 (352)
+..++. ..+. .+++|+.|+++++. ++.+... .+..+++|+.|++++|..++.+ +...+..+++|+.
T Consensus 135 -l~~~~~--------~~~~-~l~~L~~L~L~~N~-l~~~~~~--~~~~l~~L~~L~l~~~~~l~~i-~~~~~~~l~~L~~ 200 (452)
T 3zyi_A 135 -LTVIPS--------GAFE-YLSKLRELWLRNNP-IESIPSY--AFNRVPSLMRLDLGELKKLEYI-SEGAFEGLFNLKY 200 (452)
T ss_dssp -CSBCCT--------TTSS-SCTTCCEEECCSCC-CCEECTT--TTTTCTTCCEEECCCCTTCCEE-CTTTTTTCTTCCE
T ss_pred -CCccCh--------hhhc-ccCCCCEEECCCCC-cceeCHh--HHhcCCcccEEeCCCCCCcccc-ChhhccCCCCCCE
Confidence 444322 1112 68899999998864 4444322 4667899999999999888887 5555558899999
Q ss_pred CC-CCCccchhhhhcccCCCCCcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccc-cCCccCC
Q 044585 214 PQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKL-VPASWHL 291 (352)
Q Consensus 214 L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~~ 291 (352)
|+ +.+.++.++ .+..+++|++|++++ +.++.+....+ ..+++|+.|+++++. ++.+ +..+..+
T Consensus 201 L~L~~n~l~~~~----------~~~~l~~L~~L~Ls~-N~l~~~~~~~~---~~l~~L~~L~L~~n~-l~~~~~~~~~~l 265 (452)
T 3zyi_A 201 LNLGMCNIKDMP----------NLTPLVGLEELEMSG-NHFPEIRPGSF---HGLSSLKKLWVMNSQ-VSLIERNAFDGL 265 (452)
T ss_dssp EECTTSCCSSCC----------CCTTCTTCCEEECTT-SCCSEECGGGG---TTCTTCCEEECTTSC-CCEECTTTTTTC
T ss_pred EECCCCcccccc----------cccccccccEEECcC-CcCcccCcccc---cCccCCCEEEeCCCc-CceECHHHhcCC
Confidence 98 666666542 246688999999999 46777766666 688999999999984 5554 4567889
Q ss_pred CCCcEEeecCCccccccccccccCccccccEEEEeccc
Q 044585 292 ENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIADCK 329 (352)
Q Consensus 292 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 329 (352)
++|++|+++++ +++.++. ..+..+++|+.|++.++|
T Consensus 266 ~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 266 ASLVELNLAHN-NLSSLPH-DLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTCCEEECCSS-CCSCCCT-TSSTTCTTCCEEECCSSC
T ss_pred CCCCEEECCCC-cCCccCh-HHhccccCCCEEEccCCC
Confidence 99999999877 6777754 456778999999998864
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.72 E-value=1.3e-16 Score=148.93 Aligned_cols=237 Identities=14% Similarity=0.176 Sum_probs=178.3
Q ss_pred chhhhhhceeeeccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCC
Q 044585 54 NSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCD 133 (352)
Q Consensus 54 ~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~ 133 (352)
+..+..+|..+. ++++.|+++++. ++.++... + ..+++|++|++++| .+....+ ..+..+++|++|++++|.
T Consensus 52 ~~~l~~iP~~~~--~~l~~L~L~~n~-i~~~~~~~-~--~~l~~L~~L~Ls~n-~i~~i~~-~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 52 RKNLREVPDGIS--TNTRLLNLHENQ-IQIIKVNS-F--KHLRHLEILQLSRN-HIRTIEI-GAFNGLANLNTLELFDNR 123 (440)
T ss_dssp SCCCSSCCSCCC--TTCSEEECCSCC-CCEECTTT-T--SSCSSCCEEECCSS-CCCEECG-GGGTTCSSCCEEECCSSC
T ss_pred CCCcCcCCCCCC--CCCcEEEccCCc-CCeeCHHH-h--hCCCCCCEEECCCC-cCCccCh-hhccCCccCCEEECCCCc
Confidence 445667776544 789999999987 77665443 3 36899999999998 5666544 347789999999999974
Q ss_pred CcceeeeeccccccccccCCCCcccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCC
Q 044585 134 LIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKE 213 (352)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~ 213 (352)
++.++. ..+. .+++|+.|+++++. ++.+... .+..+++|+.|++.++..+..+ +...+.++++|+.
T Consensus 124 -l~~~~~--------~~~~-~l~~L~~L~L~~N~-i~~~~~~--~~~~l~~L~~L~l~~~~~l~~i-~~~~~~~l~~L~~ 189 (440)
T 3zyj_A 124 -LTTIPN--------GAFV-YLSKLKELWLRNNP-IESIPSY--AFNRIPSLRRLDLGELKRLSYI-SEGAFEGLSNLRY 189 (440)
T ss_dssp -CSSCCT--------TTSC-SCSSCCEEECCSCC-CCEECTT--TTTTCTTCCEEECCCCTTCCEE-CTTTTTTCSSCCE
T ss_pred -CCeeCH--------hHhh-ccccCceeeCCCCc-ccccCHH--HhhhCcccCEeCCCCCCCccee-CcchhhcccccCe
Confidence 444322 1122 68899999998864 4443321 4567899999999999888876 5555558899999
Q ss_pred CC-CCCccchhhhhcccCCCCCcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCccccc-CCccCC
Q 044585 214 PQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLV-PASWHL 291 (352)
Q Consensus 214 L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~~ 291 (352)
|+ ..+.++.++ .+..+++|++|+++++ .++.+....+ ..+++|+.|+++++ .++.++ ..+..+
T Consensus 190 L~L~~n~l~~~~----------~~~~l~~L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~L~L~~n-~l~~~~~~~~~~l 254 (440)
T 3zyj_A 190 LNLAMCNLREIP----------NLTPLIKLDELDLSGN-HLSAIRPGSF---QGLMHLQKLWMIQS-QIQVIERNAFDNL 254 (440)
T ss_dssp EECTTSCCSSCC----------CCTTCSSCCEEECTTS-CCCEECTTTT---TTCTTCCEEECTTC-CCCEECTTSSTTC
T ss_pred ecCCCCcCcccc----------ccCCCcccCEEECCCC-ccCccChhhh---ccCccCCEEECCCC-ceeEEChhhhcCC
Confidence 98 666666443 2466889999999995 7777766666 68999999999998 456554 467889
Q ss_pred CCCcEEeecCCccccccccccccCccccccEEEEeccc
Q 044585 292 ENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIADCK 329 (352)
Q Consensus 292 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 329 (352)
++|++|+++++ +++.++. ..+..+++|+.|+++++|
T Consensus 255 ~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 255 QSLVEINLAHN-NLTLLPH-DLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TTCCEEECTTS-CCCCCCT-TTTSSCTTCCEEECCSSC
T ss_pred CCCCEEECCCC-CCCccCh-hHhccccCCCEEEcCCCC
Confidence 99999999877 6777754 456778999999998854
No 52
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.72 E-value=1.3e-16 Score=153.85 Aligned_cols=250 Identities=11% Similarity=0.082 Sum_probs=180.1
Q ss_pred ecCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCccee
Q 044585 5 EFPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREI 84 (352)
Q Consensus 5 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~ 84 (352)
.+++|++|++.+| .++.+|..+..+ +|++|++++|. +..+|. ..+++|++|+++++.....
T Consensus 280 ~l~~L~~L~l~~~-~l~~l~~~~~~~-~L~~L~l~~n~--------------~~~l~~--~~l~~L~~L~l~~n~~~~~- 340 (570)
T 2z63_A 280 CLTNVSSFSLVSV-TIERVKDFSYNF-GWQHLELVNCK--------------FGQFPT--LKLKSLKRLTFTSNKGGNA- 340 (570)
T ss_dssp GGTTCSEEEEESC-EECSCCBCCSCC-CCSEEEEESCB--------------CSSCCB--CBCSSCCEEEEESCBSCCB-
T ss_pred CcCcccEEEecCc-cchhhhhhhccC-CccEEeeccCc--------------ccccCc--ccccccCEEeCcCCccccc-
Confidence 4799999999998 777888888888 99999999543 334444 3689999999999873322
Q ss_pred ccCCCCCCCCCCCccEEEEecCCCCcccCC-chhhhcCCCCcEEEEccCCCcceeee-eccccccccccCCCCcccCeec
Q 044585 85 WHGQAVPVSFFNNLRQLAVDDCTNMSSAIP-TNLLRCLNNLRCLEVRNCDLIEEVLH-LEELNAKEEHIGPRFPRLNRLR 162 (352)
Q Consensus 85 ~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~~~~~~~~~~~L~~L~ 162 (352)
++...+++|++|++++| .+..... ...+..+++|++|++++|.. ..++. +. .+++|+.|+
T Consensus 341 -----~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~-----------~l~~L~~L~ 402 (570)
T 2z63_A 341 -----FSEVDLPSLEFLDLSRN-GLSFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFL-----------GLEQLEHLD 402 (570)
T ss_dssp -----CCCCBCTTCCEEECCSS-CCBEEEEEEHHHHTCSCCCEEECCSCSE-EEEEEEEE-----------TCTTCCEEE
T ss_pred -----cccccCCCCCEEeCcCC-ccCccccccccccccCccCEEECCCCcc-cccccccc-----------ccCCCCEEE
Confidence 22246899999999998 4544321 23367899999999999763 33322 22 789999999
Q ss_pred cccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCC
Q 044585 163 LIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQ 241 (352)
Q Consensus 163 l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~ 241 (352)
+.++. +....... .+..+++|+.|++++| .+....+..+ ..+++|+.|+ ..+.++....+. .++.+++
T Consensus 403 l~~n~-l~~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~p~-------~~~~l~~ 471 (570)
T 2z63_A 403 FQHSN-LKQMSEFS-VFLSLRNLIYLDISHT-HTRVAFNGIF-NGLSSLEVLKMAGNSFQENFLPD-------IFTELRN 471 (570)
T ss_dssp CTTSE-EESCTTSC-TTTTCTTCCEEECTTS-CCEECCTTTT-TTCTTCCEEECTTCEEGGGEECS-------CCTTCTT
T ss_pred ccCCc-cccccchh-hhhcCCCCCEEeCcCC-cccccchhhh-hcCCcCcEEECcCCcCccccchh-------hhhcccC
Confidence 99865 33322211 3567899999999998 4555434444 4789999998 665554211111 1467899
Q ss_pred cceeecccccccccccccccccccccCCcceEEEecCCCcccccC-CccCCCCCcEEeecCCccccc
Q 044585 242 LKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVP-ASWHLENLEALKVSKCHRLIN 307 (352)
Q Consensus 242 L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~ 307 (352)
|++|++++| .++.+....+ ..+++|+.|++++| .++.++. .+..+++|++|++++++--.+
T Consensus 472 L~~L~l~~n-~l~~~~~~~~---~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 472 LTFLDLSQC-QLEQLSPTAF---NSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp CCEEECTTS-CCCEECTTTT---TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCEEECCCC-ccccCChhhh---hcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence 999999996 6666655555 68899999999998 5666654 567899999999988764433
No 53
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.72 E-value=1.8e-18 Score=154.65 Aligned_cols=244 Identities=16% Similarity=0.133 Sum_probs=157.4
Q ss_pred CCCCCceEEEecccccCcceeecCccchhhhhhc-eeeeccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecC
Q 044585 28 SSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCY-EVMIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDC 106 (352)
Q Consensus 28 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c 106 (352)
..+++|++|+++++ .+..++ ..+..+++|++|+++++. ++.... . ..+++|++|++++|
T Consensus 31 ~~~~~L~~L~L~~n--------------~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~----~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 31 QSAWNVKELDLSGN--------------PLSQISAADLAPFTKLELLNLSSNV-LYETLD-L----ESLSTLRTLDLNNN 90 (317)
T ss_dssp TTGGGCSEEECTTS--------------CCCCCCHHHHTTCTTCCEEECTTSC-CEEEEE-E----TTCTTCCEEECCSS
T ss_pred ccCCCCCEEECcCC--------------ccCcCCHHHhhCCCcCCEEECCCCc-CCcchh-h----hhcCCCCEEECcCC
Confidence 45667888888843 222222 344567788888888776 543322 2 35778888888877
Q ss_pred CCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccccccccccccCCceeeccCcc
Q 044585 107 TNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELE 186 (352)
Q Consensus 107 ~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~ 186 (352)
.+.... ..++|++|++++|. +..++. . .+++|+.|+++++. ++.+... .+..+++|+
T Consensus 91 -~l~~l~------~~~~L~~L~l~~n~-l~~~~~-~-----------~~~~L~~L~l~~N~-l~~~~~~--~~~~l~~L~ 147 (317)
T 3o53_A 91 -YVQELL------VGPSIETLHAANNN-ISRVSC-S-----------RGQGKKNIYLANNK-ITMLRDL--DEGCRSRVQ 147 (317)
T ss_dssp -EEEEEE------ECTTCCEEECCSSC-CSEEEE-C-----------CCSSCEEEECCSSC-CCSGGGB--CTGGGSSEE
T ss_pred -cccccc------CCCCcCEEECCCCc-cCCcCc-c-----------ccCCCCEEECCCCC-CCCccch--hhhccCCCC
Confidence 344322 34778888888764 333321 1 46778888887654 3332221 345577888
Q ss_pred eEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCcceeeccccccccccccccccccc
Q 044585 187 NLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNK 265 (352)
Q Consensus 187 ~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~ 265 (352)
.|+++++ .++...+..+...+++|+.|+ +.+.++.+... ..+++|++|++++ +.++.++.. + .
T Consensus 148 ~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~----------~~l~~L~~L~Ls~-N~l~~l~~~-~---~ 211 (317)
T 3o53_A 148 YLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ----------VVFAKLKTLDLSS-NKLAFMGPE-F---Q 211 (317)
T ss_dssp EEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC----------CCCTTCCEEECCS-SCCCEECGG-G---G
T ss_pred EEECCCC-CCCcccHHHHhhccCcCCEEECCCCcCcccccc----------cccccCCEEECCC-CcCCcchhh-h---c
Confidence 8888887 555554555555678888888 66666655221 3468899999998 467777655 3 5
Q ss_pred ccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCccccccccccccCccccccEEEEecccccc
Q 044585 266 AFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIADCKRIE 332 (352)
Q Consensus 266 ~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~ 332 (352)
.+++|+.|+++++ .++.+|..+..+++|++|++++++-..+..+ .....+++|+.+++.+++.++
T Consensus 212 ~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~-~~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 212 SAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLR-DFFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp GGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCBHHHHH-HHHHTCHHHHHHHHHHHHHHH
T ss_pred ccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCccCcCHH-HHHhccccceEEECCCchhcc
Confidence 7889999999887 6778888788889999999987765423222 244566777777777655443
No 54
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.72 E-value=6.1e-19 Score=170.88 Aligned_cols=290 Identities=15% Similarity=0.096 Sum_probs=145.1
Q ss_pred ecCCccEEeccccccce-----EeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCC
Q 044585 5 EFPSLEQVSMTHCPNMK-----TFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFP 79 (352)
Q Consensus 5 ~l~~L~~L~l~~~~~l~-----~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 79 (352)
.+++|++|++.++ .++ .++..+..+++|++|++++|. +..++..+..+++|++|+++.+.
T Consensus 190 ~~~~L~~L~L~~n-~~~~~~~~~l~~~~~~~~~L~~L~L~~~~--------------~~~l~~~~~~~~~L~~L~l~~~~ 254 (592)
T 3ogk_B 190 HNTSLEVLNFYMT-EFAKISPKDLETIARNCRSLVSVKVGDFE--------------ILELVGFFKAAANLEEFCGGSLN 254 (592)
T ss_dssp HCCCCCEEECTTC-CCSSCCHHHHHHHHHHCTTCCEEECSSCB--------------GGGGHHHHHHCTTCCEEEECBCC
T ss_pred cCCCccEEEeecc-CCCccCHHHHHHHHhhCCCCcEEeccCcc--------------HHHHHHHHhhhhHHHhhcccccc
Confidence 4789999999887 333 333334568999999999542 33344444556666666665422
Q ss_pred Ccce---eccCC-----------------CCCC--CCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcce
Q 044585 80 RLRE---IWHGQ-----------------AVPV--SFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEE 137 (352)
Q Consensus 80 ~l~~---~~~~~-----------------~l~~--~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 137 (352)
.... .+... .++. ..+++|++|++++|. +........+..+++|++|+++.+..-..
T Consensus 255 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~ 333 (592)
T 3ogk_B 255 EDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRG 333 (592)
T ss_dssp CCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHH
T ss_pred cccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHH
Confidence 1100 00000 0000 134455555555543 32222212234455555555542111000
Q ss_pred eeeeccccccccccCCCCcccCeecccc----------ccccccccccCCceeeccCcceEeeccCCCCcccccchhhhc
Q 044585 138 VLHLEELNAKEEHIGPRFPRLNRLRLID----------LPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHV 207 (352)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~----------~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 207 (352)
+.. ... .+++|++|++.+ |..+....... ....+++|++|.+ +|..+++..+..+...
T Consensus 334 l~~---------~~~-~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~-l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~ 401 (592)
T 3ogk_B 334 LEV---------LAQ-YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIA-LAQGCQELEYMAV-YVSDITNESLESIGTY 401 (592)
T ss_dssp HHH---------HHH-HCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHH-HHHHCTTCSEEEE-EESCCCHHHHHHHHHH
T ss_pred HHH---------HHH-hCCCCCEEEeecCccccccccccCccCHHHHHH-HHhhCccCeEEEe-ecCCccHHHHHHHHhh
Confidence 000 001 355566666653 43333210000 1223566777766 4445555444444444
Q ss_pred cCCCCCCC-C----CCccchhhhhcccCCCCCcccccCCcceeecccccc-cccccccccccccccCCcceEEEecCCCc
Q 044585 208 TTNNKEPQ-K----LTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHK-VQHLWKENDESNKAFANLKSLEIFECSKL 281 (352)
Q Consensus 208 ~~~L~~L~-~----~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-l~~l~~~~~~~~~~~~~L~~L~l~~c~~l 281 (352)
+++|++|+ . |+.++..+...+... .+..+++|+.|+++.|.. ++......+ ...+++|+.|++++|. +
T Consensus 402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~---~~~~~~~L~~L~L~~~~~~l~~~~~~~~--~~~~~~L~~L~L~~n~-l 475 (592)
T 3ogk_B 402 LKNLCDFRLVLLDREERITDLPLDNGVRS---LLIGCKKLRRFAFYLRQGGLTDLGLSYI--GQYSPNVRWMLLGYVG-E 475 (592)
T ss_dssp CCSCCEEEEEECSCCSCCSSCCCHHHHHH---HHHHCTTCCEEEEECCGGGCCHHHHHHH--HHSCTTCCEEEECSCC-S
T ss_pred CCCCcEEEEeecCCCccccCchHHHHHHH---HHHhCCCCCEEEEecCCCCccHHHHHHH--HHhCccceEeeccCCC-C
Confidence 66666666 2 445543211100000 023467777777765543 222211111 1346778888888774 4
Q ss_pred cc--ccCCccCCCCCcEEeecCCccccccccccccCccccccEEEEeccc
Q 044585 282 QK--LVPASWHLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIADCK 329 (352)
Q Consensus 282 ~~--l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 329 (352)
+. ++..+..+++|++|++++|+ +++.........+++|++|++++|.
T Consensus 476 ~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 476 SDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp SHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred CHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 32 33334567888888888887 5544333344567888888888886
No 55
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.68 E-value=4.4e-18 Score=152.06 Aligned_cols=271 Identities=11% Similarity=0.060 Sum_probs=187.1
Q ss_pred cCCccEEeccccccceEec-cCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCccee
Q 044585 6 FPSLEQVSMTHCPNMKTFS-RGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREI 84 (352)
Q Consensus 6 l~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~ 84 (352)
+++|++|++.+| .++.++ ..+..+++|++|++++|. +...+. +..+++|++|+++++. ++.+
T Consensus 33 ~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~--------------l~~~~~-~~~l~~L~~L~Ls~n~-l~~l 95 (317)
T 3o53_A 33 AWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNV--------------LYETLD-LESLSTLRTLDLNNNY-VQEL 95 (317)
T ss_dssp GGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSC--------------CEEEEE-ETTCTTCCEEECCSSE-EEEE
T ss_pred CCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCc--------------CCcchh-hhhcCCCCEEECcCCc-cccc
Confidence 579999999998 676665 467889999999999542 222332 6688999999999987 7653
Q ss_pred ccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccc
Q 044585 85 WHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLI 164 (352)
Q Consensus 85 ~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 164 (352)
+ ..++|++|++++| .+....+. .+++|++|++++|.. ..++.. .+. .+++|+.|+++
T Consensus 96 ~--------~~~~L~~L~l~~n-~l~~~~~~----~~~~L~~L~l~~N~l-~~~~~~--------~~~-~l~~L~~L~Ls 152 (317)
T 3o53_A 96 L--------VGPSIETLHAANN-NISRVSCS----RGQGKKNIYLANNKI-TMLRDL--------DEG-CRSRVQYLDLK 152 (317)
T ss_dssp E--------ECTTCCEEECCSS-CCSEEEEC----CCSSCEEEECCSSCC-CSGGGB--------CTG-GGSSEEEEECT
T ss_pred c--------CCCCcCEEECCCC-ccCCcCcc----ccCCCCEEECCCCCC-CCccch--------hhh-ccCCCCEEECC
Confidence 3 2478999999998 56554432 478899999998753 322111 111 57899999998
Q ss_pred cccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCcc
Q 044585 165 DLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLK 243 (352)
Q Consensus 165 ~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~ 243 (352)
++. +..+.... ....+++|+.|+++++ .++.+ +... .+++|+.|+ +.+.++.++.. +..+++|+
T Consensus 153 ~N~-l~~~~~~~-~~~~l~~L~~L~L~~N-~l~~~-~~~~--~l~~L~~L~Ls~N~l~~l~~~---------~~~l~~L~ 217 (317)
T 3o53_A 153 LNE-IDTVNFAE-LAASSDTLEHLNLQYN-FIYDV-KGQV--VFAKLKTLDLSSNKLAFMGPE---------FQSAAGVT 217 (317)
T ss_dssp TSC-CCEEEGGG-GGGGTTTCCEEECTTS-CCCEE-ECCC--CCTTCCEEECCSSCCCEECGG---------GGGGTTCS
T ss_pred CCC-CCcccHHH-HhhccCcCCEEECCCC-cCccc-cccc--ccccCCEEECCCCcCCcchhh---------hcccCccc
Confidence 864 43332211 1235789999999988 46654 3222 478899998 77777765443 35678999
Q ss_pred eeecccccccccccccccccccccCCcceEEEecCCCc-ccccCCccCCCCCcEEeecCCccccccccccccCccccccE
Q 044585 244 ELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKL-QKLVPASWHLENLEALKVSKCHRLINLLTLSTSRSLIILQS 322 (352)
Q Consensus 244 ~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l-~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~ 322 (352)
.|+++++ .++.++.. + ..+++|+.|++++++.. ..++..+..+++|+.+++.+++.++...+... ..+.+..
T Consensus 218 ~L~L~~N-~l~~l~~~-~---~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~--~~~~~~~ 290 (317)
T 3o53_A 218 WISLRNN-KLVLIEKA-L---RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEEC--TVPTLGH 290 (317)
T ss_dssp EEECTTS-CCCEECTT-C---CCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCCC--SSTTCEE
T ss_pred EEECcCC-cccchhhH-h---hcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhcc--CCCceec
Confidence 9999994 77777754 3 57899999999998644 35666677889999999988887776533211 1223333
Q ss_pred EEEecccccceeccCC
Q 044585 323 MTIADCKRIEEIIQSP 338 (352)
Q Consensus 323 L~i~~c~~l~~~~~~~ 338 (352)
.....|..+..-++..
T Consensus 291 ~~~~cc~~l~~~~~~~ 306 (317)
T 3o53_A 291 YGAYCCEDLPAPFADR 306 (317)
T ss_dssp ETTEEEBCCTTTHHHH
T ss_pred ccceeeccCChhHHHH
Confidence 3345577776655533
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.68 E-value=8.3e-16 Score=136.49 Aligned_cols=238 Identities=14% Similarity=0.118 Sum_probs=166.1
Q ss_pred hhhhhhceeeeccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccC--CchhhhcCCCCcEEEEccC
Q 044585 55 STIQKCYEVMIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAI--PTNLLRCLNNLRCLEVRNC 132 (352)
Q Consensus 55 ~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~--~~~~~~~l~~L~~L~l~~~ 132 (352)
..+..+|..+ .++|++|+++++. ++.++... + ..+++|++|++++| .+.... +. .+..+++|++|++++|
T Consensus 17 ~~l~~ip~~~--~~~l~~L~L~~n~-l~~i~~~~-~--~~l~~L~~L~L~~n-~l~~~~~~~~-~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 17 KGLTSVPTGI--PSSATRLELESNK-LQSLPHGV-F--DKLTQLTKLSLSSN-GLSFKGCCSQ-SDFGTTSLKYLDLSFN 88 (306)
T ss_dssp SCCSSCCSCC--CTTCCEEECCSSC-CCCCCTTT-T--TTCTTCSEEECCSS-CCCEEEEEEH-HHHSCSCCCEEECCSC
T ss_pred CCcccCCCCC--CCCCCEEECCCCc-cCccCHhH-h--hccccCCEEECCCC-ccCcccCccc-ccccccccCEEECCCC
Confidence 3455666543 3789999999987 77665543 2 35899999999998 454332 22 2456899999999997
Q ss_pred CCcceeeeeccccccccccCCCCcccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCC
Q 044585 133 DLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNK 212 (352)
Q Consensus 133 ~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~ 212 (352)
. +..++... . .+++|++|+++++. +..+.... .+..+++|+.|+++++ .+....+.. +..+++|+
T Consensus 89 ~-i~~l~~~~---------~-~l~~L~~L~l~~n~-l~~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~ 153 (306)
T 2z66_A 89 G-VITMSSNF---------L-GLEQLEHLDFQHSN-LKQMSEFS-VFLSLRNLIYLDISHT-HTRVAFNGI-FNGLSSLE 153 (306)
T ss_dssp S-EEEEEEEE---------E-TCTTCCEEECTTSE-EESSTTTT-TTTTCTTCCEEECTTS-CCEECSTTT-TTTCTTCC
T ss_pred c-cccChhhc---------C-CCCCCCEEECCCCc-ccccccch-hhhhccCCCEEECCCC-cCCccchhh-cccCcCCC
Confidence 5 44443311 1 68999999998864 44333211 4667899999999998 455543433 34789999
Q ss_pred CCC-CCCccchhhhhcccCCCCCcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccC-CccC
Q 044585 213 EPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVP-ASWH 290 (352)
Q Consensus 213 ~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~ 290 (352)
.|+ ..+.++...... .+..+++|++|+++++ .++.++...+ ..+++|+.|+++++ .++.++. .+..
T Consensus 154 ~L~l~~n~l~~~~~~~-------~~~~l~~L~~L~Ls~n-~l~~~~~~~~---~~l~~L~~L~L~~N-~l~~~~~~~~~~ 221 (306)
T 2z66_A 154 VLKMAGNSFQENFLPD-------IFTELRNLTFLDLSQC-QLEQLSPTAF---NSLSSLQVLNMSHN-NFFSLDTFPYKC 221 (306)
T ss_dssp EEECTTCEEGGGEECS-------CCTTCTTCCEEECTTS-CCCEECTTTT---TTCTTCCEEECTTS-CCSBCCSGGGTT
T ss_pred EEECCCCccccccchh-------HHhhCcCCCEEECCCC-CcCCcCHHHh---cCCCCCCEEECCCC-ccCccChhhccC
Confidence 998 666665421111 1466889999999995 6777765555 68899999999998 4566554 5678
Q ss_pred CCCCcEEeecCCccccccccccccCcc-ccccEEEEeccc
Q 044585 291 LENLEALKVSKCHRLINLLTLSTSRSL-IILQSMTIADCK 329 (352)
Q Consensus 291 ~~~L~~L~l~~c~~l~~~~~~~~~~~l-~~L~~L~i~~c~ 329 (352)
+++|++|+++++ .++...+. .+..+ ++|+.|++++++
T Consensus 222 l~~L~~L~L~~N-~l~~~~~~-~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 222 LNSLQVLDYSLN-HIMTSKKQ-ELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CTTCCEEECTTS-CCCBCSSS-SCCCCCTTCCEEECTTCC
T ss_pred cccCCEeECCCC-CCcccCHH-HHHhhhccCCEEEccCCC
Confidence 999999999888 45554333 34445 489999999865
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.68 E-value=5.4e-17 Score=142.73 Aligned_cols=222 Identities=19% Similarity=0.221 Sum_probs=114.2
Q ss_pred cEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhc-eeeeccCccceeEeccCCCcceeccCC
Q 044585 10 EQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCY-EVMIGFRDIEHLQLSHFPRLREIWHGQ 88 (352)
Q Consensus 10 ~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~ 88 (352)
++++..+. +++.+|..+ .++|++|+++++ .+..++ ..+..+++|++|+++++. ++.+....
T Consensus 14 ~~~~c~~~-~l~~ip~~~--~~~l~~L~l~~n--------------~i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~ 75 (285)
T 1ozn_A 14 VTTSCPQQ-GLQAVPVGI--PAASQRIFLHGN--------------RISHVPAASFRACRNLTILWLHSNV-LARIDAAA 75 (285)
T ss_dssp CEEECCSS-CCSSCCTTC--CTTCSEEECTTS--------------CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTT
T ss_pred eEEEcCcC-CcccCCcCC--CCCceEEEeeCC--------------cCCccCHHHcccCCCCCEEECCCCc-cceeCHhh
Confidence 34555443 555665543 457777777733 222222 223456677777777665 55442222
Q ss_pred CCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccccc
Q 044585 89 AVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPK 168 (352)
Q Consensus 89 ~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 168 (352)
+ ..+++|++|++++|..+....+. .+..+++|++|++++|.. ..++. ..+. .+++|+.|+++++.
T Consensus 76 -~--~~l~~L~~L~l~~n~~l~~~~~~-~~~~l~~L~~L~l~~n~l-~~~~~--------~~~~-~l~~L~~L~l~~n~- 140 (285)
T 1ozn_A 76 -F--TGLALLEQLDLSDNAQLRSVDPA-TFHGLGRLHTLHLDRCGL-QELGP--------GLFR-GLAALQYLYLQDNA- 140 (285)
T ss_dssp -T--TTCTTCCEEECCSCTTCCCCCTT-TTTTCTTCCEEECTTSCC-CCCCT--------TTTT-TCTTCCEEECCSSC-
T ss_pred -c--CCccCCCEEeCCCCCCccccCHH-HhcCCcCCCEEECCCCcC-CEECH--------hHhh-CCcCCCEEECCCCc-
Confidence 1 24666777777766434444332 245666777777766542 21110 0111 45566666665542
Q ss_pred cccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCCCCCccchhhhhcccCCCCCcccccCCcceeecc
Q 044585 169 LKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQKLTSEENFLLAHQVQPLFDEKLTFPQLKELKLS 248 (352)
Q Consensus 169 l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 248 (352)
++.+... .+..+++|+.|+++++ .++.+ +... +..+++|++|+++
T Consensus 141 l~~~~~~--~~~~l~~L~~L~l~~n-~l~~~-~~~~-------------------------------~~~l~~L~~L~l~ 185 (285)
T 1ozn_A 141 LQALPDD--TFRDLGNLTHLFLHGN-RISSV-PERA-------------------------------FRGLHSLDRLLLH 185 (285)
T ss_dssp CCCCCTT--TTTTCTTCCEEECCSS-CCCEE-CTTT-------------------------------TTTCTTCCEEECC
T ss_pred ccccCHh--HhccCCCccEEECCCC-ccccc-CHHH-------------------------------hcCccccCEEECC
Confidence 2222110 2334555666666554 33332 2111 2345667777777
Q ss_pred cccccccccccccccccccCCcceEEEecCCCcccccC-CccCCCCCcEEeecCCcc
Q 044585 249 RLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVP-ASWHLENLEALKVSKCHR 304 (352)
Q Consensus 249 ~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~ 304 (352)
++ .++.+....+ ..+++|+.|+++++ .++.++. .+..+++|++|++++++-
T Consensus 186 ~n-~l~~~~~~~~---~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 186 QN-RVAHVHPHAF---RDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp SS-CCCEECTTTT---TTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred CC-cccccCHhHc---cCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCCc
Confidence 63 4455544444 45667777777766 4444442 355667777777766644
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.68 E-value=7.1e-16 Score=135.52 Aligned_cols=88 Identities=18% Similarity=0.146 Sum_probs=69.9
Q ss_pred ccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccc-cCCccCCCCCcEEeecCCcccccccccccc
Q 044585 236 KLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKL-VPASWHLENLEALKVSKCHRLINLLTLSTS 314 (352)
Q Consensus 236 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 314 (352)
++.+++|++|++++ +.++.++...+ ..+++|+.|+++++. ++.+ +..+..+++|++|+++++ .++.+++ ..+
T Consensus 149 ~~~l~~L~~L~l~~-n~l~~~~~~~~---~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~ 221 (285)
T 1ozn_A 149 FRDLGNLTHLFLHG-NRISSVPERAF---RGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFAN-NLSALPT-EAL 221 (285)
T ss_dssp TTTCTTCCEEECCS-SCCCEECTTTT---TTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCSCCCH-HHH
T ss_pred hccCCCccEEECCC-CcccccCHHHh---cCccccCEEECCCCc-ccccCHhHccCcccccEeeCCCC-cCCcCCH-HHc
Confidence 35578999999999 47777777656 678999999999985 5554 667888999999999877 5666643 346
Q ss_pred CccccccEEEEecccc
Q 044585 315 RSLIILQSMTIADCKR 330 (352)
Q Consensus 315 ~~l~~L~~L~i~~c~~ 330 (352)
..+++|+.|++++++-
T Consensus 222 ~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 222 APLRALQYLRLNDNPW 237 (285)
T ss_dssp TTCTTCCEEECCSSCE
T ss_pred ccCcccCEEeccCCCc
Confidence 7789999999998753
No 59
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.68 E-value=2.6e-15 Score=146.27 Aligned_cols=120 Identities=16% Similarity=0.194 Sum_probs=66.1
Q ss_pred CccEEeccccccceEecc-CCCCCCCceEEEecccccCccee---ecCc-------cchhhhhhce-eeeccCccceeEe
Q 044585 8 SLEQVSMTHCPNMKTFSR-GISSTPKLYVVQVTEREEGEHHW---EGNK-------LNSTIQKCYE-VMIGFRDIEHLQL 75 (352)
Q Consensus 8 ~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~---~~~~-------~~~~~~~l~~-~~~~~~~L~~L~l 75 (352)
++++|+|++| .++.++. .|..+++|++|++++|.+...+- .... .+..+..+|. .+.++++|++|++
T Consensus 53 ~~~~LdLs~N-~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 53 STKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred CCCEEEeeCC-CCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 4555666555 4555543 34555556666655554433221 0000 0123444553 3456778888888
Q ss_pred ccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCC
Q 044585 76 SHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCD 133 (352)
Q Consensus 76 ~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~ 133 (352)
+++. ++.++... + +.+++|++|+++++ .+........+..+++|++|++++|.
T Consensus 132 s~N~-l~~l~~~~-~--~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 132 VETN-LASLENFP-I--GHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp TTSC-CCCSTTCC-C--TTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred CCCc-CCCCChhh-h--hcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCcc
Confidence 8776 65544332 2 35778888888887 44443222335677888888887653
No 60
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.67 E-value=2.9e-17 Score=159.08 Aligned_cols=289 Identities=12% Similarity=0.033 Sum_probs=178.9
Q ss_pred ecCCccEEeccccccceEe-----ccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCC
Q 044585 5 EFPSLEQVSMTHCPNMKTF-----SRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFP 79 (352)
Q Consensus 5 ~l~~L~~L~l~~~~~l~~l-----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 79 (352)
.+++|++|++.+| .++.. +.....+++|++|+++++.+.. .....++..+..+++|++|++++|.
T Consensus 162 ~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~---------~~~~~l~~~~~~~~~L~~L~L~~~~ 231 (592)
T 3ogk_B 162 HCRKIKTLLMEES-SFSEKDGKWLHELAQHNTSLEVLNFYMTEFAK---------ISPKDLETIARNCRSLVSVKVGDFE 231 (592)
T ss_dssp HCTTCSEEECTTC-EEECCCSHHHHHHHHHCCCCCEEECTTCCCSS---------CCHHHHHHHHHHCTTCCEEECSSCB
T ss_pred hCCCCCEEECccc-cccCcchhHHHHHHhcCCCccEEEeeccCCCc---------cCHHHHHHHHhhCCCCcEEeccCcc
Confidence 5899999999999 44332 2223468999999999542221 1123455555678999999999976
Q ss_pred CcceeccCCCCCCCCCCCccEEEEecCCCC------------------------cccCCchhhhcCCCCcEEEEccCCCc
Q 044585 80 RLREIWHGQAVPVSFFNNLRQLAVDDCTNM------------------------SSAIPTNLLRCLNNLRCLEVRNCDLI 135 (352)
Q Consensus 80 ~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l------------------------~~~~~~~~~~~l~~L~~L~l~~~~~l 135 (352)
+..++... ..+++|++|.+.++... ........+..+++|++|++++|. +
T Consensus 232 -~~~l~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l 305 (592)
T 3ogk_B 232 -ILELVGFF----KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-L 305 (592)
T ss_dssp -GGGGHHHH----HHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-C
T ss_pred -HHHHHHHH----hhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-C
Confidence 44332111 23455555555432111 000111234567788888888776 3
Q ss_pred ceeeeeccccccccccCCCCcccCeeccccccccccccccCCceeeccCcceEeecc----------CCCCcccccchhh
Q 044585 136 EEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIEN----------CPDMETFISNSVV 205 (352)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~----------c~~l~~~~~~~~~ 205 (352)
... .. ...+. .+++|+.|++.++..-..+.. ....+++|++|++.+ |..+++.....+.
T Consensus 306 ~~~-~~------~~~~~-~~~~L~~L~L~~~~~~~~l~~---~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~ 374 (592)
T 3ogk_B 306 ETE-DH------CTLIQ-KCPNLEVLETRNVIGDRGLEV---LAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALA 374 (592)
T ss_dssp CHH-HH------HHHHT-TCTTCCEEEEEGGGHHHHHHH---HHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHH
T ss_pred CHH-HH------HHHHH-hCcCCCEEeccCccCHHHHHH---HHHhCCCCCEEEeecCccccccccccCccCHHHHHHHH
Confidence 221 00 01112 688888888874321111111 234578999999995 7777765444555
Q ss_pred hccCCCCCCC-CCCccchhhhhcccCCCCCccc-ccCCcceeeccc---cccccccccc-cc-ccccccCCcceEEEecC
Q 044585 206 HVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKL-TFPQLKELKLSR---LHKVQHLWKE-ND-ESNKAFANLKSLEIFEC 278 (352)
Q Consensus 206 ~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~---~~~l~~l~~~-~~-~~~~~~~~L~~L~l~~c 278 (352)
..+++|++|+ .|+.++...... ++ .+++|+.|++++ |+.++..+.. .+ .....+++|+.|++++|
T Consensus 375 ~~~~~L~~L~l~~~~l~~~~~~~--------l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~ 446 (592)
T 3ogk_B 375 QGCQELEYMAVYVSDITNESLES--------IGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLR 446 (592)
T ss_dssp HHCTTCSEEEEEESCCCHHHHHH--------HHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECC
T ss_pred hhCccCeEEEeecCCccHHHHHH--------HHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecC
Confidence 6789999999 888877644332 23 378999999984 5566654321 00 00146899999999887
Q ss_pred CC-ccc--ccCCccCCCCCcEEeecCCccccccccccccCccccccEEEEeccc
Q 044585 279 SK-LQK--LVPASWHLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIADCK 329 (352)
Q Consensus 279 ~~-l~~--l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 329 (352)
.+ ++. +......+++|++|++++|. +++.........+++|++|++++|+
T Consensus 447 ~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 447 QGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp GGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred CCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC
Confidence 64 332 11112358999999998775 5554333456778999999999997
No 61
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.66 E-value=1.5e-17 Score=161.03 Aligned_cols=62 Identities=15% Similarity=0.207 Sum_probs=43.9
Q ss_pred cCCcceEEEecCCCcccc-cCC-ccCCCCCcEEeecCCccccccccccccCccccccEEEEecccc
Q 044585 267 FANLKSLEIFECSKLQKL-VPA-SWHLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIADCKR 330 (352)
Q Consensus 267 ~~~L~~L~l~~c~~l~~l-~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~ 330 (352)
+++|+.|++++|. ++.. +.. ...+++|++|++++|+. ++.........+++|+.|++++|+.
T Consensus 455 ~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 455 AKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred chhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 6778888888774 3321 111 24589999999999976 5544444556789999999999964
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.65 E-value=3.7e-17 Score=145.71 Aligned_cols=81 Identities=19% Similarity=0.106 Sum_probs=49.0
Q ss_pred ccCCcceeeccccccccccc-ccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCccccccccccccCc
Q 044585 238 TFPQLKELKLSRLHKVQHLW-KENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTSRS 316 (352)
Q Consensus 238 ~~~~L~~L~l~~~~~l~~l~-~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 316 (352)
.+++|++|+++++ .++... .... ..+++|+.|+++++ .++.+|..+. ++|++|+++++ +++.++. +..
T Consensus 226 ~l~~L~~L~Ls~N-~l~~~~~~~~~---~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N-~l~~~p~---~~~ 294 (312)
T 1wwl_A 226 ARVQLQGLDLSHN-SLRDAAGAPSC---DWPSQLNSLNLSFT-GLKQVPKGLP--AKLSVLDLSYN-RLDRNPS---PDE 294 (312)
T ss_dssp TTCCCSEEECTTS-CCCSSCCCSCC---CCCTTCCEEECTTS-CCSSCCSSCC--SEEEEEECCSS-CCCSCCC---TTT
T ss_pred cCCCCCEEECCCC-cCCcccchhhh---hhcCCCCEEECCCC-ccChhhhhcc--CCceEEECCCC-CCCCChh---Hhh
Confidence 3467777777773 444433 2222 34577777777776 4566665544 67777777655 5555532 456
Q ss_pred cccccEEEEeccc
Q 044585 317 LIILQSMTIADCK 329 (352)
Q Consensus 317 l~~L~~L~i~~c~ 329 (352)
+++|+.|++++.+
T Consensus 295 l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 295 LPQVGNLSLKGNP 307 (312)
T ss_dssp SCEEEEEECTTCT
T ss_pred CCCCCEEeccCCC
Confidence 6777777777654
No 63
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.65 E-value=4e-18 Score=165.18 Aligned_cols=133 Identities=12% Similarity=0.055 Sum_probs=80.2
Q ss_pred eccCcceEeec-----cCCCCcccc----cchhhhccCCCCCCC-CCCccchhhhhcccCCCCCccc-ccCCcceeeccc
Q 044585 181 ELSELENLTIE-----NCPDMETFI----SNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKL-TFPQLKELKLSR 249 (352)
Q Consensus 181 ~~~~L~~L~l~-----~c~~l~~~~----~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~ 249 (352)
.+++|+.|++. +|..++... ...+...+++|+.|+ .. .++...... ++ .+++|+.|++++
T Consensus 395 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~--------l~~~~~~L~~L~L~~ 465 (594)
T 2p1m_B 395 NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEY--------IGTYAKKMEMLSVAF 465 (594)
T ss_dssp HCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHH--------HHHHCTTCCEEEEES
T ss_pred hCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHH--------HHHhchhccEeeccC
Confidence 46788888887 566666321 112344677777777 33 444332221 22 268899999988
Q ss_pred ccccccccccccccccccCCcceEEEecCCCccc--ccCCccCCCCCcEEeecCCccccccccccccCccccccEEEEec
Q 044585 250 LHKVQHLWKENDESNKAFANLKSLEIFECSKLQK--LVPASWHLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIAD 327 (352)
Q Consensus 250 ~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~--l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~ 327 (352)
|. +++.....+ ...+++|+.|++++|.. +. +......+++|++|++++|+. +......+...++.|+...+..
T Consensus 466 ~~-i~~~~~~~l--~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~l~~~lp~l~i~~~~~ 540 (594)
T 2p1m_B 466 AG-DSDLGMHHV--LSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV-SFGACKLLGQKMPKLNVEVIDE 540 (594)
T ss_dssp CC-SSHHHHHHH--HHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC-BHHHHHHHHHHCTTEEEEEECS
T ss_pred CC-CcHHHHHHH--HhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC-CHHHHHHHHHhCCCCEEEEecC
Confidence 64 433221111 13589999999999975 32 222345689999999999976 4333333345567776555543
No 64
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.65 E-value=8.9e-17 Score=144.61 Aligned_cols=213 Identities=18% Similarity=0.197 Sum_probs=106.2
Q ss_pred eeccCccceeEeccCCCcce--eccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcce--ee
Q 044585 64 MIGFRDIEHLQLSHFPRLRE--IWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEE--VL 139 (352)
Q Consensus 64 ~~~~~~L~~L~l~~~~~l~~--~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~--~~ 139 (352)
...+++|++|++++|. +.. .+... ..+++|++|++++| .+....+. .+..+++|++|++++|..++. ++
T Consensus 89 ~~~~~~L~~L~L~~~~-l~~~~~~~~~----~~~~~L~~L~L~~~-~l~~~~~~-~l~~~~~L~~L~L~~~~~l~~~~l~ 161 (336)
T 2ast_B 89 HFSPFRVQHMDLSNSV-IEVSTLHGIL----SQCSKLQNLSLEGL-RLSDPIVN-TLAKNSNLVRLNLSGCSGFSEFALQ 161 (336)
T ss_dssp CCCCBCCCEEECTTCE-ECHHHHHHHH----TTBCCCSEEECTTC-BCCHHHHH-HHTTCTTCSEEECTTCBSCCHHHHH
T ss_pred hccCCCCCEEEccCCC-cCHHHHHHHH----hhCCCCCEEeCcCc-ccCHHHHH-HHhcCCCCCEEECCCCCCCCHHHHH
Confidence 3455666666666654 332 11111 24566666666666 34332222 244566666666666643332 11
Q ss_pred eeccccccccccCCCCcccCeeccccccccccccccCCceeecc-CcceEeeccCC-CCcccccchhhhccCCCCCCC--
Q 044585 140 HLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELS-ELENLTIENCP-DMETFISNSVVHVTTNNKEPQ-- 215 (352)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~-~L~~L~l~~c~-~l~~~~~~~~~~~~~~L~~L~-- 215 (352)
.. +. .+++|++|+++++..++...... .+..++ +|++|++++|. .+++.........+++|+.|+
T Consensus 162 ~~---------~~-~~~~L~~L~l~~~~~l~~~~~~~-~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~ 230 (336)
T 2ast_B 162 TL---------LS-SCSRLDELNLSWCFDFTEKHVQV-AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS 230 (336)
T ss_dssp HH---------HH-HCTTCCEEECCCCTTCCHHHHHH-HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECT
T ss_pred HH---------Hh-cCCCCCEEcCCCCCCcChHHHHH-HHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCC
Confidence 10 11 45666666666664444311000 234556 66666666664 333111112233566666666
Q ss_pred CCCccchhhhhcccCCCCCcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCC-CCC
Q 044585 216 KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHL-ENL 294 (352)
Q Consensus 216 ~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~-~~L 294 (352)
.|..++..... .++.+++|++|++++|..+.......+ ..+++|+.|++++| +..- .+..+ ..|
T Consensus 231 ~~~~l~~~~~~--------~l~~l~~L~~L~l~~~~~~~~~~~~~l---~~~~~L~~L~l~~~--i~~~--~~~~l~~~l 295 (336)
T 2ast_B 231 DSVMLKNDCFQ--------EFFQLNYLQHLSLSRCYDIIPETLLEL---GEIPTLKTLQVFGI--VPDG--TLQLLKEAL 295 (336)
T ss_dssp TCTTCCGGGGG--------GGGGCTTCCEEECTTCTTCCGGGGGGG---GGCTTCCEEECTTS--SCTT--CHHHHHHHS
T ss_pred CCCcCCHHHHH--------HHhCCCCCCEeeCCCCCCCCHHHHHHH---hcCCCCCEEeccCc--cCHH--HHHHHHhhC
Confidence 33323322221 134567888888888764433322233 56788888888877 2211 12222 235
Q ss_pred cEEeecCCcccccccc
Q 044585 295 EALKVSKCHRLINLLT 310 (352)
Q Consensus 295 ~~L~l~~c~~l~~~~~ 310 (352)
+.|++ +|++++...+
T Consensus 296 ~~L~l-~~n~l~~~~~ 310 (336)
T 2ast_B 296 PHLQI-NCSHFTTIAR 310 (336)
T ss_dssp TTSEE-SCCCSCCTTC
T ss_pred cceEE-ecccCccccC
Confidence 56667 5556666533
No 65
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.65 E-value=4.7e-15 Score=138.79 Aligned_cols=79 Identities=22% Similarity=0.176 Sum_probs=37.3
Q ss_pred CCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCcccccccc-ccccCcc-
Q 044585 240 PQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLT-LSTSRSL- 317 (352)
Q Consensus 240 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~l- 317 (352)
++|++|++++ +.++.++ ..+++|+.|++++| .++.+|. .+++|++|+++++. ++.++. ......+
T Consensus 317 ~~L~~L~Ls~-N~l~~lp-------~~~~~L~~L~L~~N-~l~~lp~---~l~~L~~L~L~~N~-l~~l~~ip~~l~~L~ 383 (454)
T 1jl5_A 317 PSLEELNVSN-NKLIELP-------ALPPRLERLIASFN-HLAEVPE---LPQNLKQLHVEYNP-LREFPDIPESVEDLR 383 (454)
T ss_dssp TTCCEEECCS-SCCSCCC-------CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC-CSSCCCCCTTCCEEE
T ss_pred CcCCEEECCC-Ccccccc-------ccCCcCCEEECCCC-ccccccc---hhhhccEEECCCCC-CCcCCCChHHHHhhh
Confidence 3677777776 3455443 23577888888776 5666665 46788888886663 333211 0112223
Q ss_pred ------------ccccEEEEeccccc
Q 044585 318 ------------IILQSMTIADCKRI 331 (352)
Q Consensus 318 ------------~~L~~L~i~~c~~l 331 (352)
++|+.|++++++..
T Consensus 384 ~n~~~~~i~~~~~~L~~L~ls~N~l~ 409 (454)
T 1jl5_A 384 MNSHLAEVPELPQNLKQLHVETNPLR 409 (454)
T ss_dssp CCC-----------------------
T ss_pred hcccccccccccCcCCEEECCCCcCC
Confidence 67788888877654
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.64 E-value=1.3e-15 Score=143.83 Aligned_cols=237 Identities=15% Similarity=0.125 Sum_probs=152.3
Q ss_pred CCCCceEEEecccccCcceeecCccchhhhhh-ceeeeccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCC
Q 044585 29 STPKLYVVQVTEREEGEHHWEGNKLNSTIQKC-YEVMIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCT 107 (352)
Q Consensus 29 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~ 107 (352)
.+++|++|+++++ .+..+ |..+..+++|++|++++|. ++.... . +.+++|++|++++|
T Consensus 32 ~~~~L~~L~Ls~n--------------~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-l----~~l~~L~~L~Ls~N- 90 (487)
T 3oja_A 32 SAWNVKELDLSGN--------------PLSQISAADLAPFTKLELLNLSSNV-LYETLD-L----ESLSTLRTLDLNNN- 90 (487)
T ss_dssp TGGGCCEEECCSS--------------CCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE-C----TTCTTCCEEECCSS-
T ss_pred cCCCccEEEeeCC--------------cCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc-c----ccCCCCCEEEecCC-
Confidence 3447777777743 22222 2345567777777777776 543322 2 35777888888776
Q ss_pred CCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccccccccccccCCceeeccCcce
Q 044585 108 NMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELEN 187 (352)
Q Consensus 108 ~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~ 187 (352)
.+...+ ..++|+.|++++|.. ..++. . .+++|+.|+++++. +..+... .+..+++|+.
T Consensus 91 ~l~~l~------~~~~L~~L~L~~N~l-~~~~~-~-----------~l~~L~~L~L~~N~-l~~~~~~--~~~~l~~L~~ 148 (487)
T 3oja_A 91 YVQELL------VGPSIETLHAANNNI-SRVSC-S-----------RGQGKKNIYLANNK-ITMLRDL--DEGCRSRVQY 148 (487)
T ss_dssp EEEEEE------ECTTCCEEECCSSCC-CCEEE-C-----------CCSSCEEEECCSSC-CCSGGGB--CGGGGSSEEE
T ss_pred cCCCCC------CCCCcCEEECcCCcC-CCCCc-c-----------ccCCCCEEECCCCC-CCCCCch--hhcCCCCCCE
Confidence 444432 236788888877643 22211 1 46778888877654 3332211 3456788888
Q ss_pred EeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCcceeecccccccccccccccccccc
Q 044585 188 LTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKA 266 (352)
Q Consensus 188 L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~ 266 (352)
|+++++ .++...|..+...+++|+.|+ +.+.++.+.. ...+++|+.|++++ +.++.++.. + ..
T Consensus 149 L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~----------~~~l~~L~~L~Ls~-N~l~~~~~~-~---~~ 212 (487)
T 3oja_A 149 LDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDVKG----------QVVFAKLKTLDLSS-NKLAFMGPE-F---QS 212 (487)
T ss_dssp EECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC----------CCCCTTCCEEECCS-SCCCEECGG-G---GG
T ss_pred EECCCC-CCCCcChHHHhhhCCcccEEecCCCccccccc----------cccCCCCCEEECCC-CCCCCCCHh-H---cC
Confidence 888877 555554666655678888888 6666665522 23478999999998 467777655 3 57
Q ss_pred cCCcceEEEecCCCcccccCCccCCCCCcEEeecCCccccccccccccCccccccEEEEe
Q 044585 267 FANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIA 326 (352)
Q Consensus 267 ~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~ 326 (352)
+++|+.|+++++ .++.+|..+..+++|+.|++++++-.....+ .....++.|+.+.+.
T Consensus 213 l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~-~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 213 AAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLR-DFFSKNQRVQTVAKQ 270 (487)
T ss_dssp GTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCBCHHHHH-HHHTTCHHHHHHHHH
T ss_pred CCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCCCcCcchH-HHHHhCCCCcEEecc
Confidence 899999999987 5778888888889999999988765422212 234556666666664
No 67
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.64 E-value=1.1e-16 Score=144.00 Aligned_cols=237 Identities=14% Similarity=0.134 Sum_probs=156.9
Q ss_pred CccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeecccccc
Q 044585 68 RDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAK 147 (352)
Q Consensus 68 ~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 147 (352)
++++.|+++++. +...+... ..+++|++|++++|. +........+..+++|++|++++|......+.
T Consensus 70 ~~l~~L~l~~n~-l~~~~~~~----~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~------- 136 (336)
T 2ast_B 70 QGVIAFRCPRSF-MDQPLAEH----FSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVN------- 136 (336)
T ss_dssp TTCSEEECTTCE-ECSCCCSC----CCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHH-------
T ss_pred ccceEEEcCCcc-ccccchhh----ccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCcccCHHHHH-------
Confidence 789999999876 55544433 468999999999984 54431223467899999999999853222111
Q ss_pred ccccCCCCcccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccC-CCCCCC-CCC--ccchh
Q 044585 148 EEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTT-NNKEPQ-KLT--SEENF 223 (352)
Q Consensus 148 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~-~L~~L~-~~~--~l~~~ 223 (352)
.+. .+++|++|+++++..+++..... .+..+++|++|++++|..+++.........++ +|++|+ ..+ .++..
T Consensus 137 --~l~-~~~~L~~L~L~~~~~l~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~ 212 (336)
T 2ast_B 137 --TLA-KNSNLVRLNLSGCSGFSEFALQT-LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS 212 (336)
T ss_dssp --HHT-TCTTCSEEECTTCBSCCHHHHHH-HHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHH
T ss_pred --HHh-cCCCCCEEECCCCCCCCHHHHHH-HHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHH
Confidence 112 68999999999997666421111 35678999999999997777532233445788 999999 443 44422
Q ss_pred hhhcccCCCCCcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccc-cCCccCCCCCcEEeecCC
Q 044585 224 LLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKL-VPASWHLENLEALKVSKC 302 (352)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~l~~c 302 (352)
..... +..+++|++|++++|..++......+ ..+++|+.|++++|..+... ...+..+++|++|++++|
T Consensus 213 ~l~~~-------~~~~~~L~~L~l~~~~~l~~~~~~~l---~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 213 DLSTL-------VRRCPNLVHLDLSDSVMLKNDCFQEF---FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp HHHHH-------HHHCTTCSEEECTTCTTCCGGGGGGG---GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred HHHHH-------HhhCCCCCEEeCCCCCcCCHHHHHHH---hCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 11111 35689999999999876665444444 57899999999999744321 124578999999999999
Q ss_pred ccccccccccccCccccccEEEEecccccceeccC
Q 044585 303 HRLINLLTLSTSRSLIILQSMTIADCKRIEEIIQS 337 (352)
Q Consensus 303 ~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~ 337 (352)
+++.....+.. +++.|++. |..++.+...
T Consensus 283 --i~~~~~~~l~~---~l~~L~l~-~n~l~~~~~~ 311 (336)
T 2ast_B 283 --VPDGTLQLLKE---ALPHLQIN-CSHFTTIARP 311 (336)
T ss_dssp --SCTTCHHHHHH---HSTTSEES-CCCSCCTTCS
T ss_pred --cCHHHHHHHHh---hCcceEEe-cccCccccCC
Confidence 44322222222 35555664 5556555443
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.64 E-value=7.9e-16 Score=145.40 Aligned_cols=218 Identities=18% Similarity=0.201 Sum_probs=163.6
Q ss_pred ccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeecccc
Q 044585 66 GFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELN 145 (352)
Q Consensus 66 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 145 (352)
.+++|++|+++++. ++.++... + +.+++|++|++++| .+...++ +..+++|++|++++|. +..++
T Consensus 32 ~~~~L~~L~Ls~n~-l~~~~~~~-~--~~l~~L~~L~Ls~N-~l~~~~~---l~~l~~L~~L~Ls~N~-l~~l~------ 96 (487)
T 3oja_A 32 SAWNVKELDLSGNP-LSQISAAD-L--APFTKLELLNLSSN-VLYETLD---LESLSTLRTLDLNNNY-VQELL------ 96 (487)
T ss_dssp TGGGCCEEECCSSC-CCCCCGGG-G--TTCTTCCEEECTTS-CCEEEEE---CTTCTTCCEEECCSSE-EEEEE------
T ss_pred cCCCccEEEeeCCc-CCCCCHHH-H--hCCCCCCEEEeeCC-CCCCCcc---cccCCCCCEEEecCCc-CCCCC------
Confidence 45699999999987 76654322 2 46899999999998 5665554 5589999999999974 44432
Q ss_pred ccccccCCCCcccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhh
Q 044585 146 AKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFL 224 (352)
Q Consensus 146 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~ 224 (352)
..++|+.|+++++. +..+. ...+++|+.|.++++ .++.+.|..+ ..+++|+.|+ +.+.++...
T Consensus 97 --------~~~~L~~L~L~~N~-l~~~~-----~~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~ 160 (487)
T 3oja_A 97 --------VGPSIETLHAANNN-ISRVS-----CSRGQGKKNIYLANN-KITMLRDLDE-GCRSRVQYLDLKLNEIDTVN 160 (487)
T ss_dssp --------ECTTCCEEECCSSC-CCCEE-----ECCCSSCEEEECCSS-CCCSGGGBCG-GGGSSEEEEECTTSCCCEEE
T ss_pred --------CCCCcCEEECcCCc-CCCCC-----ccccCCCCEEECCCC-CCCCCCchhh-cCCCCCCEEECCCCCCCCcC
Confidence 45899999998864 44332 234689999999988 5666545444 3789999999 777777654
Q ss_pred hhcccCCCCCcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCcc
Q 044585 225 LAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHR 304 (352)
Q Consensus 225 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~ 304 (352)
+..- ...+++|+.|+++++ .++.++.. ..+++|+.|+++++ .++.+|..+..+++|+.|+++++ .
T Consensus 161 ~~~l-------~~~l~~L~~L~Ls~N-~l~~~~~~-----~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N-~ 225 (487)
T 3oja_A 161 FAEL-------AASSDTLEHLNLQYN-FIYDVKGQ-----VVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-K 225 (487)
T ss_dssp GGGG-------GGGTTTCCEEECTTS-CCCEEECC-----CCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-C
T ss_pred hHHH-------hhhCCcccEEecCCC-cccccccc-----ccCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCC-c
Confidence 4321 125789999999995 56666433 46899999999998 67888888889999999999876 5
Q ss_pred ccccccccccCccccccEEEEeccccc
Q 044585 305 LINLLTLSTSRSLIILQSMTIADCKRI 331 (352)
Q Consensus 305 l~~~~~~~~~~~l~~L~~L~i~~c~~l 331 (352)
++.+|. .+..+++|+.|++++++-.
T Consensus 226 l~~lp~--~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 226 LVLIEK--ALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CCEECT--TCCCCTTCCEEECTTCCBC
T ss_pred Ccccch--hhccCCCCCEEEcCCCCCc
Confidence 666654 3567889999999987644
No 69
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.63 E-value=1.3e-15 Score=142.58 Aligned_cols=250 Identities=14% Similarity=0.051 Sum_probs=117.7
Q ss_pred eecCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCcc-------------
Q 044585 4 LEFPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDI------------- 70 (352)
Q Consensus 4 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L------------- 70 (352)
++.++|++|.+.++ .++.+|..++.+++|++|++++| .-.+.+|..++.+.+|
T Consensus 8 ~~~~~L~~L~l~~n-~l~~iP~~i~~L~~L~~L~l~~n-------------~~~~~~p~~~~~l~~L~~l~l~~c~~~~l 73 (454)
T 1jl5_A 8 VSNTFLQEPLRHSS-NLTEMPVEAENVKSKTEYYNAWS-------------EWERNAPPGNGEQREMAVSRLRDCLDRQA 73 (454)
T ss_dssp ---------------------------CCHHHHHHHHH-------------HHHHTSCTTSCCCHHHHHHHHHHHHHHTC
T ss_pred cccccchhhhcccC-chhhCChhHhcccchhhhhccCC-------------cccccCCcccccchhcchhhhhhhhccCC
Confidence 34678999999998 67999999999999999999953 2233445444444433
Q ss_pred ceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchh---------------h-hcCCCCcEEEEccCCC
Q 044585 71 EHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNL---------------L-RCLNNLRCLEVRNCDL 134 (352)
Q Consensus 71 ~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~---------------~-~~l~~L~~L~l~~~~~ 134 (352)
++|+++++. ++.++. ..++|++|+++++ .+...+ ... + ...++|++|++++|.
T Consensus 74 ~~L~l~~~~-l~~lp~-------~~~~L~~L~l~~n-~l~~lp-~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~- 142 (454)
T 1jl5_A 74 HELELNNLG-LSSLPE-------LPPHLESLVASCN-SLTELP-ELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQ- 142 (454)
T ss_dssp SEEECTTSC-CSCCCS-------CCTTCSEEECCSS-CCSSCC-CCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSC-
T ss_pred CEEEecCCc-cccCCC-------CcCCCCEEEccCC-cCCccc-cccCCCcEEECCCCccCcccCCCCCCCEEECcCCC-
Confidence 556666554 443221 1234555555544 233321 100 0 001345555555442
Q ss_pred cceeeeeccccccccccCCCCcccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCC
Q 044585 135 IEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEP 214 (352)
Q Consensus 135 l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L 214 (352)
++.++.+ + .+++|++|+++++. ++.++. ..++|+.|+++++ .++.+ | . ...+++|+.|
T Consensus 143 l~~lp~~----------~-~l~~L~~L~l~~N~-l~~lp~------~~~~L~~L~L~~n-~l~~l-~-~-~~~l~~L~~L 200 (454)
T 1jl5_A 143 LEKLPEL----------Q-NSSFLKIIDVDNNS-LKKLPD------LPPSLEFIAAGNN-QLEEL-P-E-LQNLPFLTAI 200 (454)
T ss_dssp CSSCCCC----------T-TCTTCCEEECCSSC-CSCCCC------CCTTCCEEECCSS-CCSSC-C-C-CTTCTTCCEE
T ss_pred CCCCccc----------C-CCCCCCEEECCCCc-CcccCC------CcccccEEECcCC-cCCcC-c-c-ccCCCCCCEE
Confidence 2222211 1 56666666666542 333221 1246777777666 44443 3 2 2356666666
Q ss_pred C-CCCccchhhhhcccCCCCCcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCC
Q 044585 215 Q-KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLEN 293 (352)
Q Consensus 215 ~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~ 293 (352)
+ ..+.++.++. ..++|++|+++++ .++.++. + ..+++|+.|+++++ .++.+|. .+++
T Consensus 201 ~l~~N~l~~l~~------------~~~~L~~L~l~~n-~l~~lp~--~---~~l~~L~~L~l~~N-~l~~l~~---~~~~ 258 (454)
T 1jl5_A 201 YADNNSLKKLPD------------LPLSLESIVAGNN-ILEELPE--L---QNLPFLTTIYADNN-LLKTLPD---LPPS 258 (454)
T ss_dssp ECCSSCCSSCCC------------CCTTCCEEECCSS-CCSSCCC--C---TTCTTCCEEECCSS-CCSSCCS---CCTT
T ss_pred ECCCCcCCcCCC------------CcCcccEEECcCC-cCCcccc--c---CCCCCCCEEECCCC-cCCcccc---cccc
Confidence 6 4444443211 1247888888874 5555652 3 57788888888876 4566653 2477
Q ss_pred CcEEeecCCccccccccccccCccccccEEEEecc
Q 044585 294 LEALKVSKCHRLINLLTLSTSRSLIILQSMTIADC 328 (352)
Q Consensus 294 L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c 328 (352)
|++|++++| .++.++. ..++|+.|++++|
T Consensus 259 L~~L~l~~N-~l~~l~~-----~~~~L~~L~ls~N 287 (454)
T 1jl5_A 259 LEALNVRDN-YLTDLPE-----LPQSLTFLDVSEN 287 (454)
T ss_dssp CCEEECCSS-CCSCCCC-----CCTTCCEEECCSS
T ss_pred cCEEECCCC-cccccCc-----ccCcCCEEECcCC
Confidence 888888666 3444432 2356777777776
No 70
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.62 E-value=7.9e-15 Score=129.15 Aligned_cols=199 Identities=13% Similarity=0.048 Sum_probs=127.6
Q ss_pred eccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccc
Q 044585 65 IGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEEL 144 (352)
Q Consensus 65 ~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 144 (352)
.+++++++++++++. ++.++.+ ..++++.|+++++ .+....+ ..+..+++|++|+++++. ++.++...
T Consensus 7 ~~l~~l~~l~~~~~~-l~~ip~~------~~~~l~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~-- 74 (290)
T 1p9a_G 7 SKVASHLEVNCDKRN-LTALPPD------LPKDTTILHLSEN-LLYTFSL-ATLMPYTRLTQLNLDRAE-LTKLQVDG-- 74 (290)
T ss_dssp ECSTTCCEEECTTSC-CSSCCSC------CCTTCCEEECTTS-CCSEEEG-GGGTTCTTCCEEECTTSC-CCEEECCS--
T ss_pred cccCCccEEECCCCC-CCcCCCC------CCCCCCEEEcCCC-cCCccCH-HHhhcCCCCCEEECCCCc-cCcccCCC--
Confidence 456667777776654 5553332 2456777777776 3444433 235567777777777754 44433221
Q ss_pred cccccccCCCCcccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchh
Q 044585 145 NAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENF 223 (352)
Q Consensus 145 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~ 223 (352)
.+++|+.|+++++. ++.++. .+..+++|+.|+++++ .++.+ +...+..+++|+.|+ ..+.++.+
T Consensus 75 ---------~l~~L~~L~Ls~N~-l~~l~~---~~~~l~~L~~L~l~~N-~l~~l-~~~~~~~l~~L~~L~L~~N~l~~~ 139 (290)
T 1p9a_G 75 ---------TLPVLGTLDLSHNQ-LQSLPL---LGQTLPALTVLDVSFN-RLTSL-PLGALRGLGELQELYLKGNELKTL 139 (290)
T ss_dssp ---------CCTTCCEEECCSSC-CSSCCC---CTTTCTTCCEEECCSS-CCCCC-CSSTTTTCTTCCEEECTTSCCCCC
T ss_pred ---------CCCcCCEEECCCCc-CCcCch---hhccCCCCCEEECCCC-cCccc-CHHHHcCCCCCCEEECCCCCCCcc
Confidence 57777777777653 443332 3455677788877776 45554 333334677777777 66666654
Q ss_pred hhhcccCCCCCcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCc
Q 044585 224 LLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCH 303 (352)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~ 303 (352)
+... +..+++|+.|++++ +.++.++...+ ..+++|+.|+++++ .++.+|..+...++|+++++.+++
T Consensus 140 ~~~~--------~~~l~~L~~L~L~~-N~l~~l~~~~~---~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 140 PPGL--------LTPTPKLEKLSLAN-NNLTELPAGLL---NGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CTTT--------TTTCTTCCEEECTT-SCCSCCCTTTT---TTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCC
T ss_pred Chhh--------cccccCCCEEECCC-CcCCccCHHHh---cCcCCCCEEECCCC-cCCccChhhcccccCCeEEeCCCC
Confidence 4332 34567888999888 57777777665 56888899998887 577888877778888888887654
No 71
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.62 E-value=8e-15 Score=132.70 Aligned_cols=239 Identities=17% Similarity=0.154 Sum_probs=118.9
Q ss_pred cEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhce-eeeccCccceeEeccCCCcceeccCC
Q 044585 10 EQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYE-VMIGFRDIEHLQLSHFPRLREIWHGQ 88 (352)
Q Consensus 10 ~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~ 88 (352)
++++..+. +++.+|..+ .+++++|++++ ..+..+|. .+.++++|++|+++++...+.++.+.
T Consensus 12 ~~v~C~~~-~Lt~iP~~l--~~~l~~L~Ls~--------------N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~ 74 (350)
T 4ay9_X 12 RVFLCQES-KVTEIPSDL--PRNAIELRFVL--------------TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV 74 (350)
T ss_dssp TEEEEEST-TCCSCCTTC--CTTCSEEEEES--------------CCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTS
T ss_pred CEEEecCC-CCCccCcCc--CCCCCEEEccC--------------CcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhH
Confidence 34444443 567777655 46777777773 33445553 34567777777777776334333332
Q ss_pred CCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccccc
Q 044585 89 AVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPK 168 (352)
Q Consensus 89 ~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 168 (352)
+ ..+++|+++.+.++.++....+. .+..+++|++|+++++. +..++.... . ...++..+++.++..
T Consensus 75 -f--~~L~~l~~~l~~~~N~l~~l~~~-~f~~l~~L~~L~l~~n~-l~~~~~~~~--------~-~~~~l~~l~l~~~~~ 140 (350)
T 4ay9_X 75 -F--SNLPKLHEIRIEKANNLLYINPE-AFQNLPNLQYLLISNTG-IKHLPDVHK--------I-HSLQKVLLDIQDNIN 140 (350)
T ss_dssp -B--CSCTTCCEEEEEEETTCCEECTT-SBCCCTTCCEEEEEEEC-CSSCCCCTT--------C-CBSSCEEEEEESCTT
T ss_pred -h--hcchhhhhhhcccCCcccccCch-hhhhccccccccccccc-cccCCchhh--------c-ccchhhhhhhccccc
Confidence 2 13556665544444356555443 35667777777777653 322221110 0 233444555555444
Q ss_pred cccccccCCceeec-cCcceEeeccCCCCcccccchhhhccCCCCCCC--CCCccchhhhhcccCCCCCcccccCCccee
Q 044585 169 LKRFCNFTGNIIEL-SELENLTIENCPDMETFISNSVVHVTTNNKEPQ--KLTSEENFLLAHQVQPLFDEKLTFPQLKEL 245 (352)
Q Consensus 169 l~~~~~~~~~~~~~-~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~--~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L 245 (352)
+..+.... +..+ ..++.|.++++ .++.+ +...+ ...+|+++. .++.++.++... ++.+++|++|
T Consensus 141 i~~l~~~~--f~~~~~~l~~L~L~~N-~i~~i-~~~~f-~~~~L~~l~l~~~n~l~~i~~~~--------f~~l~~L~~L 207 (350)
T 4ay9_X 141 IHTIERNS--FVGLSFESVILWLNKN-GIQEI-HNSAF-NGTQLDELNLSDNNNLEELPNDV--------FHGASGPVIL 207 (350)
T ss_dssp CCEECTTS--STTSBSSCEEEECCSS-CCCEE-CTTSS-TTEEEEEEECTTCTTCCCCCTTT--------TTTEECCSEE
T ss_pred cccccccc--hhhcchhhhhhccccc-cccCC-Chhhc-cccchhHHhhccCCcccCCCHHH--------hccCcccchh
Confidence 44433221 1222 34666666554 44444 33322 234444444 344444443321 2344556666
Q ss_pred ecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeec
Q 044585 246 KLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVS 300 (352)
Q Consensus 246 ~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~ 300 (352)
++++ +.++.++.. .+.+|+.|.+.++..++.+|. +..+++|+.+++.
T Consensus 208 dLs~-N~l~~lp~~------~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 208 DISR-TRIHSLPSY------GLENLKKLRARSTYNLKKLPT-LEKLVALMEASLT 254 (350)
T ss_dssp ECTT-SCCCCCCSS------SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECS
T ss_pred hcCC-CCcCccChh------hhccchHhhhccCCCcCcCCC-chhCcChhhCcCC
Confidence 6655 355555533 334555555555555555552 3555556655553
No 72
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.61 E-value=1e-14 Score=124.68 Aligned_cols=201 Identities=17% Similarity=0.130 Sum_probs=101.4
Q ss_pred ccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccc
Q 044585 69 DIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKE 148 (352)
Q Consensus 69 ~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 148 (352)
+|++|+++++. ++.++... + ..+++|++|++++|..+....+. .+..+++|++|++++|+.++.++..
T Consensus 32 ~l~~L~l~~n~-l~~i~~~~-~--~~l~~L~~L~l~~n~~l~~i~~~-~f~~l~~L~~L~l~~~n~l~~i~~~------- 99 (239)
T 2xwt_C 32 STQTLKLIETH-LRTIPSHA-F--SNLPNISRIYVSIDVTLQQLESH-SFYNLSKVTHIEIRNTRNLTYIDPD------- 99 (239)
T ss_dssp TCCEEEEESCC-CSEECTTT-T--TTCTTCCEEEEECCSSCCEECTT-TEESCTTCCEEEEEEETTCCEECTT-------
T ss_pred cccEEEEeCCc-ceEECHHH-c--cCCCCCcEEeCCCCCCcceeCHh-HcCCCcCCcEEECCCCCCeeEcCHH-------
Confidence 55566665554 54444322 2 23556666666665324443322 2445566666666654444443210
Q ss_pred cccCCCCcccCeeccccccccccccccCCceeeccCcc---eEeeccCCCCcccccchhhhccCCCCCCCCCCccchhhh
Q 044585 149 EHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELE---NLTIENCPDMETFISNSVVHVTTNNKEPQKLTSEENFLL 225 (352)
Q Consensus 149 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~---~L~l~~c~~l~~~~~~~~~~~~~~L~~L~~~~~l~~~~~ 225 (352)
.+. .+++|+.|+++++. ++.++. +..+++|+ .|++++++.++.+ +...
T Consensus 100 -~f~-~l~~L~~L~l~~n~-l~~lp~----~~~l~~L~~L~~L~l~~N~~l~~i-~~~~--------------------- 150 (239)
T 2xwt_C 100 -ALK-ELPLLKFLGIFNTG-LKMFPD----LTKVYSTDIFFILEITDNPYMTSI-PVNA--------------------- 150 (239)
T ss_dssp -SEE-CCTTCCEEEEEEEC-CCSCCC----CTTCCBCCSEEEEEEESCTTCCEE-CTTT---------------------
T ss_pred -HhC-CCCCCCEEeCCCCC-Cccccc----cccccccccccEEECCCCcchhhc-Cccc---------------------
Confidence 001 35555555555432 222221 22233343 6666655444443 2111
Q ss_pred hcccCCCCCcccccCCcc-eeecccccccccccccccccccccCCcceEEEecCCCcccccC-CccCC-CCCcEEeecCC
Q 044585 226 AHQVQPLFDEKLTFPQLK-ELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVP-ASWHL-ENLEALKVSKC 302 (352)
Q Consensus 226 ~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~-~~L~~L~l~~c 302 (352)
+..+++|+ +|++++ +.++.++...+ ..++|+.|++++++.++.++. .+..+ ++|++|+++++
T Consensus 151 ----------~~~l~~L~~~L~l~~-n~l~~i~~~~~----~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N 215 (239)
T 2xwt_C 151 ----------FQGLCNETLTLKLYN-NGFTSVQGYAF----NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT 215 (239)
T ss_dssp ----------TTTTBSSEEEEECCS-CCCCEECTTTT----TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC
T ss_pred ----------ccchhcceeEEEcCC-CCCcccCHhhc----CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC
Confidence 23456677 777766 35556665544 226777777777654666643 34556 77777777654
Q ss_pred ccccccccccccCccccccEEEEecccc
Q 044585 303 HRLINLLTLSTSRSLIILQSMTIADCKR 330 (352)
Q Consensus 303 ~~l~~~~~~~~~~~l~~L~~L~i~~c~~ 330 (352)
.++.++.. .+++|+.|.+.++..
T Consensus 216 -~l~~l~~~----~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 216 -SVTALPSK----GLEHLKELIARNTWT 238 (239)
T ss_dssp -CCCCCCCT----TCTTCSEEECTTC--
T ss_pred -ccccCChh----HhccCceeeccCccC
Confidence 45555432 355677777766643
No 73
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.61 E-value=1.3e-14 Score=140.33 Aligned_cols=227 Identities=18% Similarity=0.147 Sum_probs=149.8
Q ss_pred CCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceecc
Q 044585 7 PSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWH 86 (352)
Q Consensus 7 ~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~ 86 (352)
++|++|++.+| .++.+|. .+++|++|++++|. +..+|. .+++|++|+++++. ++.+
T Consensus 61 ~~L~~L~L~~N-~l~~lp~---~l~~L~~L~Ls~N~--------------l~~lp~---~l~~L~~L~Ls~N~-l~~l-- 116 (622)
T 3g06_A 61 AHITTLVIPDN-NLTSLPA---LPPELRTLEVSGNQ--------------LTSLPV---LPPGLLELSIFSNP-LTHL-- 116 (622)
T ss_dssp TTCSEEEECSC-CCSCCCC---CCTTCCEEEECSCC--------------CSCCCC---CCTTCCEEEECSCC-CCCC--
T ss_pred CCCcEEEecCC-CCCCCCC---cCCCCCEEEcCCCc--------------CCcCCC---CCCCCCEEECcCCc-CCCC--
Confidence 68999999998 6777776 47899999999543 334444 45677777777665 5442
Q ss_pred CCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeee----cccc----ccccccCCCCccc
Q 044585 87 GQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHL----EELN----AKEEHIGPRFPRL 158 (352)
Q Consensus 87 ~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~----~~~~----~~~~~~~~~~~~L 158 (352)
+. .+++|++|++++| .+...+. .+++|++|++++|. +..++.. ..+. ....... .+++|
T Consensus 117 ----~~-~l~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N~l~~l~~-~~~~L 183 (622)
T 3g06_A 117 ----PA-LPSGLCKLWIFGN-QLTSLPV-----LPPGLQELSVSDNQ-LASLPALPSELCKLWAYNNQLTSLPM-LPSGL 183 (622)
T ss_dssp ----CC-CCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCCC-CCTTC
T ss_pred ----CC-CCCCcCEEECCCC-CCCcCCC-----CCCCCCEEECcCCc-CCCcCCccCCCCEEECCCCCCCCCcc-cCCCC
Confidence 22 3456666666665 3444322 23566666666653 2222110 0000 0000001 45788
Q ss_pred CeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCccc
Q 044585 159 NRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKL 237 (352)
Q Consensus 159 ~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~ 237 (352)
+.|+++++. ++.++. .+++|+.|.+.++ .++.+ |. .+++|+.|+ +.+.++.++ .
T Consensus 184 ~~L~Ls~N~-l~~l~~------~~~~L~~L~L~~N-~l~~l-~~----~~~~L~~L~Ls~N~L~~lp------------~ 238 (622)
T 3g06_A 184 QELSVSDNQ-LASLPT------LPSELYKLWAYNN-RLTSL-PA----LPSGLKELIVSGNRLTSLP------------V 238 (622)
T ss_dssp CEEECCSSC-CSCCCC------CCTTCCEEECCSS-CCSSC-CC----CCTTCCEEECCSSCCSCCC------------C
T ss_pred cEEECCCCC-CCCCCC------ccchhhEEECcCC-ccccc-CC----CCCCCCEEEccCCccCcCC------------C
Confidence 888888754 444322 3579999999987 56554 32 347899998 767776543 2
Q ss_pred ccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCcc
Q 044585 238 TFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHR 304 (352)
Q Consensus 238 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~ 304 (352)
.+++|+.|+++++ .++.++. .+++|+.|++++| .++.+|..+..+++|+.|++++++-
T Consensus 239 ~l~~L~~L~Ls~N-~L~~lp~-------~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 239 LPSELKELMVSGN-RLTSLPM-------LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp CCTTCCEEECCSS-CCSCCCC-------CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred CCCcCcEEECCCC-CCCcCCc-------ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCC
Confidence 3589999999994 7777763 5689999999998 6788998889999999999988864
No 74
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.60 E-value=1.2e-14 Score=124.18 Aligned_cols=186 Identities=10% Similarity=0.106 Sum_probs=134.1
Q ss_pred CCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccccccccccc
Q 044585 95 FNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCN 174 (352)
Q Consensus 95 l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 174 (352)
.++|++|+++++ .+...++ ..+..+++|+.|++++|..++.++... +. .+++|++|++.++..++.+..
T Consensus 30 ~~~l~~L~l~~n-~l~~i~~-~~~~~l~~L~~L~l~~n~~l~~i~~~~--------f~-~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 30 PPSTQTLKLIET-HLRTIPS-HAFSNLPNISRIYVSIDVTLQQLESHS--------FY-NLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp CTTCCEEEEESC-CCSEECT-TTTTTCTTCCEEEEECCSSCCEECTTT--------EE-SCTTCCEEEEEEETTCCEECT
T ss_pred CCcccEEEEeCC-cceEECH-HHccCCCCCcEEeCCCCCCcceeCHhH--------cC-CCcCCcEEECCCCCCeeEcCH
Confidence 458999999998 5666554 336789999999999987566653210 11 678888888887666666543
Q ss_pred cCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCCCCCccchhhhhcccCCCCCcccccCCcc---eeeccccc
Q 044585 175 FTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQKLTSEENFLLAHQVQPLFDEKLTFPQLK---ELKLSRLH 251 (352)
Q Consensus 175 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~~~~~l~~~~~~~~~~~~~~~~~~~~~L~---~L~l~~~~ 251 (352)
. .+..+++|+.|+++++ .++.+ |. ++.+++|+ +|+++++.
T Consensus 99 ~--~f~~l~~L~~L~l~~n-~l~~l-p~---------------------------------~~~l~~L~~L~~L~l~~N~ 141 (239)
T 2xwt_C 99 D--ALKELPLLKFLGIFNT-GLKMF-PD---------------------------------LTKVYSTDIFFILEITDNP 141 (239)
T ss_dssp T--SEECCTTCCEEEEEEE-CCCSC-CC---------------------------------CTTCCBCCSEEEEEEESCT
T ss_pred H--HhCCCCCCCEEeCCCC-CCccc-cc---------------------------------cccccccccccEEECCCCc
Confidence 2 4667788888888877 34332 21 12234454 99999965
Q ss_pred ccccccccccccccccCCcc-eEEEecCCCcccccCCccCCCCCcEEeecCCccccccccccccCcc-ccccEEEEeccc
Q 044585 252 KVQHLWKENDESNKAFANLK-SLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTSRSL-IILQSMTIADCK 329 (352)
Q Consensus 252 ~l~~l~~~~~~~~~~~~~L~-~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l-~~L~~L~i~~c~ 329 (352)
.++.++...+ ..+++|+ .|+++++ .++.++......++|++|++++++.++.++. ..+..+ ++|+.|++++++
T Consensus 142 ~l~~i~~~~~---~~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~-~~~~~l~~~L~~L~l~~N~ 216 (239)
T 2xwt_C 142 YMTSIPVNAF---QGLCNETLTLKLYNN-GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDK-DAFGGVYSGPSLLDVSQTS 216 (239)
T ss_dssp TCCEECTTTT---TTTBSSEEEEECCSC-CCCEECTTTTTTCEEEEEECTTCTTCCEECT-TTTTTCSBCCSEEECTTCC
T ss_pred chhhcCcccc---cchhcceeEEEcCCC-CCcccCHhhcCCCCCCEEEcCCCCCcccCCH-HHhhccccCCcEEECCCCc
Confidence 8888887766 6889999 9999987 5678876544558999999999877888754 356677 899999999863
Q ss_pred cccee
Q 044585 330 RIEEI 334 (352)
Q Consensus 330 ~l~~~ 334 (352)
++.+
T Consensus 217 -l~~l 220 (239)
T 2xwt_C 217 -VTAL 220 (239)
T ss_dssp -CCCC
T ss_pred -cccC
Confidence 4443
No 75
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.58 E-value=1.8e-14 Score=130.32 Aligned_cols=234 Identities=18% Similarity=0.203 Sum_probs=115.4
Q ss_pred hhhhhceeeeccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCc
Q 044585 56 TIQKCYEVMIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLI 135 (352)
Q Consensus 56 ~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l 135 (352)
.+.++|..+ .+++++|+|+++. ++.++.+. + ..+++|++|++++|..... .+...+..+++|+++...+++.+
T Consensus 20 ~Lt~iP~~l--~~~l~~L~Ls~N~-i~~i~~~~-f--~~l~~L~~L~Ls~N~i~~~-i~~~~f~~L~~l~~~l~~~~N~l 92 (350)
T 4ay9_X 20 KVTEIPSDL--PRNAIELRFVLTK-LRVIQKGA-F--SGFGDLEKIEISQNDVLEV-IEADVFSNLPKLHEIRIEKANNL 92 (350)
T ss_dssp TCCSCCTTC--CTTCSEEEEESCC-CSEECTTS-S--TTCTTCCEEEEECCTTCCE-ECTTSBCSCTTCCEEEEEEETTC
T ss_pred CCCccCcCc--CCCCCEEEccCCc-CCCcCHHH-H--cCCCCCCEEECcCCCCCCc-cChhHhhcchhhhhhhcccCCcc
Confidence 344444433 2456666666655 55554433 2 2356666666666532222 22233445556655554444445
Q ss_pred ceeeeeccccccccccCCCCcccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC
Q 044585 136 EEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ 215 (352)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~ 215 (352)
..++.. .+. .+++|+.|++.++. ++.+... ......++..|.+.++..+..+.+..+......++.|+
T Consensus 93 ~~l~~~--------~f~-~l~~L~~L~l~~n~-l~~~~~~--~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~ 160 (350)
T 4ay9_X 93 LYINPE--------AFQ-NLPNLQYLLISNTG-IKHLPDV--HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILW 160 (350)
T ss_dssp CEECTT--------SBC-CCTTCCEEEEEEEC-CSSCCCC--TTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEE
T ss_pred cccCch--------hhh-hccccccccccccc-cccCCch--hhcccchhhhhhhccccccccccccchhhcchhhhhhc
Confidence 444211 011 45566666665542 2222211 12233455556665555555542222221223455555
Q ss_pred -CCCccchhhhhcccCCCCCcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCC
Q 044585 216 -KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENL 294 (352)
Q Consensus 216 -~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L 294 (352)
..+.++.+.... ...++|+++++.+++.++.++...+ ..+++|+.|+++++ .++.+|.. .+.+|
T Consensus 161 L~~N~i~~i~~~~---------f~~~~L~~l~l~~~n~l~~i~~~~f---~~l~~L~~LdLs~N-~l~~lp~~--~~~~L 225 (350)
T 4ay9_X 161 LNKNGIQEIHNSA---------FNGTQLDELNLSDNNNLEELPNDVF---HGASGPVILDISRT-RIHSLPSY--GLENL 225 (350)
T ss_dssp CCSSCCCEECTTS---------STTEEEEEEECTTCTTCCCCCTTTT---TTEECCSEEECTTS-CCCCCCSS--SCTTC
T ss_pred cccccccCCChhh---------ccccchhHHhhccCCcccCCCHHHh---ccCcccchhhcCCC-CcCccChh--hhccc
Confidence 555555443331 1234566666666566666665555 45666666666665 45555532 35566
Q ss_pred cEEeecCCccccccccccccCccccccEEEEe
Q 044585 295 EALKVSKCHRLINLLTLSTSRSLIILQSMTIA 326 (352)
Q Consensus 295 ~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~ 326 (352)
++|.+.++.+++.+|. ...+++|+.+++.
T Consensus 226 ~~L~~l~~~~l~~lP~---l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 226 KKLRARSTYNLKKLPT---LEKLVALMEASLT 254 (350)
T ss_dssp CEEECTTCTTCCCCCC---TTTCCSCCEEECS
T ss_pred hHhhhccCCCcCcCCC---chhCcChhhCcCC
Confidence 6666666666666543 3445556666554
No 76
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.56 E-value=7.9e-16 Score=137.09 Aligned_cols=249 Identities=16% Similarity=0.128 Sum_probs=163.6
Q ss_pred ecCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeee-------ccCccceeEecc
Q 044585 5 EFPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMI-------GFRDIEHLQLSH 77 (352)
Q Consensus 5 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~L~~L~l~~ 77 (352)
..++|++|++.++ .+ .+|..+... |++|+++++.+.. ..+|.... .+++|++|++++
T Consensus 41 ~~~~L~~l~l~~n-~l-~~p~~~~~~--L~~L~L~~n~l~~------------~~~~~~~~~~~~~~~~l~~L~~L~L~~ 104 (312)
T 1wwl_A 41 GGRSLEYLLKRVD-TE-ADLGQFTDI--IKSLSLKRLTVRA------------ARIPSRILFGALRVLGISGLQELTLEN 104 (312)
T ss_dssp EEEECTTHHHHCC-TT-CCCHHHHHH--HHHCCCCEEEEEE------------EECBHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred cCCCceeEeeccc-cc-ccHHHHHHH--HhhcccccccccC------------CCcCHHHHHHHHHhcCcCCccEEEccC
Confidence 3566777777777 44 566555333 8888888532211 12333222 688999999998
Q ss_pred CCCcc-eeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcC-----CCCcEEEEccCCCcceeeeecccccccccc
Q 044585 78 FPRLR-EIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCL-----NNLRCLEVRNCDLIEEVLHLEELNAKEEHI 151 (352)
Q Consensus 78 ~~~l~-~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l-----~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 151 (352)
+. ++ ..+... + .+.+++|++|+++++ .+... |. .+..+ ++|++|++++|.. ..++. ..+
T Consensus 105 n~-l~~~~~~~~-~-~~~l~~L~~L~Ls~N-~l~~~-~~-~~~~l~~~~~~~L~~L~L~~N~l-~~~~~--------~~~ 169 (312)
T 1wwl_A 105 LE-VTGTAPPPL-L-EATGPDLNILNLRNV-SWATR-DA-WLAELQQWLKPGLKVLSIAQAHS-LNFSC--------EQV 169 (312)
T ss_dssp EB-CBSCCCCCS-S-SCCSCCCSEEEEESC-BCSSS-SS-HHHHHHTTCCTTCCEEEEESCSC-CCCCT--------TTC
T ss_pred Cc-ccchhHHHH-H-HhcCCCccEEEccCC-CCcch-hH-HHHHHHHhhcCCCcEEEeeCCCC-ccchH--------HHh
Confidence 87 55 333321 1 136889999999998 56665 42 24455 8999999998763 33221 111
Q ss_pred CCCCcccCeeccccccccccc--cccCCceeeccCcceEeeccCCCCccc--ccchhhhccCCCCCCC-CCCccchhhhh
Q 044585 152 GPRFPRLNRLRLIDLPKLKRF--CNFTGNIIELSELENLTIENCPDMETF--ISNSVVHVTTNNKEPQ-KLTSEENFLLA 226 (352)
Q Consensus 152 ~~~~~~L~~L~l~~~~~l~~~--~~~~~~~~~~~~L~~L~l~~c~~l~~~--~~~~~~~~~~~L~~L~-~~~~l~~~~~~ 226 (352)
+ .+++|+.|+++++.-...+ +... ....+++|++|+++++ .++.+ .+..++..+++|+.|+ +.+.++.....
T Consensus 170 ~-~l~~L~~L~Ls~N~l~~~~~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 246 (312)
T 1wwl_A 170 R-VFPALSTLDLSDNPELGERGLISAL-CPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA 246 (312)
T ss_dssp C-CCSSCCEEECCSCTTCHHHHHHHHS-CTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC
T ss_pred c-cCCCCCEEECCCCCcCcchHHHHHH-HhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCcCCcccch
Confidence 2 6889999999987633321 1110 1256789999999998 45532 1344555778999998 77777664421
Q ss_pred cccCCCCCcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCc
Q 044585 227 HQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCH 303 (352)
Q Consensus 227 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~ 303 (352)
. .+..+++|++|++++ +.++.++.. ..++|+.|+++++ .++.+|. +..+++|++|++++++
T Consensus 247 ~-------~~~~l~~L~~L~Ls~-N~l~~ip~~------~~~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 247 P-------SCDWPSQLNSLNLSF-TGLKQVPKG------LPAKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp S-------CCCCCTTCCEEECTT-SCCSSCCSS------CCSEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTCT
T ss_pred h-------hhhhcCCCCEEECCC-CccChhhhh------ccCCceEEECCCC-CCCCChh-HhhCCCCCEEeccCCC
Confidence 1 124468999999999 467777643 2289999999987 6777765 7889999999997764
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.54 E-value=2.3e-14 Score=127.32 Aligned_cols=144 Identities=18% Similarity=0.299 Sum_probs=73.1
Q ss_pred cCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceec
Q 044585 6 FPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIW 85 (352)
Q Consensus 6 l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~ 85 (352)
+++|++|++.+| .++.++ .+..+++|++|++++| .+..++. +..+++|++|+++++. ++.++
T Consensus 40 l~~L~~L~l~~~-~i~~l~-~~~~l~~L~~L~L~~n--------------~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~ 101 (308)
T 1h6u_A 40 LDGITTLSAFGT-GVTTIE-GVQYLNNLIGLELKDN--------------QITDLAP-LKNLTKITELELSGNP-LKNVS 101 (308)
T ss_dssp HHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSS--------------CCCCCGG-GTTCCSCCEEECCSCC-CSCCG
T ss_pred cCCcCEEEeeCC-CccCch-hhhccCCCCEEEccCC--------------cCCCChh-HccCCCCCEEEccCCc-CCCch
Confidence 566677777666 555554 3555666666666633 2222232 4456666666666655 44432
Q ss_pred cCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeecccc
Q 044585 86 HGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLID 165 (352)
Q Consensus 86 ~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 165 (352)
. . ..+++|++|++++| .+....+ +..+++|++|++++|. +..++.+. .+++|+.|++++
T Consensus 102 ~-~----~~l~~L~~L~l~~n-~l~~~~~---l~~l~~L~~L~l~~n~-l~~~~~l~-----------~l~~L~~L~l~~ 160 (308)
T 1h6u_A 102 A-I----AGLQSIKTLDLTST-QITDVTP---LAGLSNLQVLYLDLNQ-ITNISPLA-----------GLTNLQYLSIGN 160 (308)
T ss_dssp G-G----TTCTTCCEEECTTS-CCCCCGG---GTTCTTCCEEECCSSC-CCCCGGGG-----------GCTTCCEEECCS
T ss_pred h-h----cCCCCCCEEECCCC-CCCCchh---hcCCCCCCEEECCCCc-cCcCcccc-----------CCCCccEEEccC
Confidence 1 1 24566666666665 3444322 4456666666666643 22221111 455555555555
Q ss_pred ccccccccccCCceeeccCcceEeeccC
Q 044585 166 LPKLKRFCNFTGNIIELSELENLTIENC 193 (352)
Q Consensus 166 ~~~l~~~~~~~~~~~~~~~L~~L~l~~c 193 (352)
+. ++.+. .+..+++|+.|+++++
T Consensus 161 n~-l~~~~----~l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 161 AQ-VSDLT----PLANLSKLTTLKADDN 183 (308)
T ss_dssp SC-CCCCG----GGTTCTTCCEEECCSS
T ss_pred Cc-CCCCh----hhcCCCCCCEEECCCC
Confidence 42 22221 1334455555555554
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.53 E-value=1.2e-13 Score=120.19 Aligned_cols=62 Identities=23% Similarity=0.293 Sum_probs=43.2
Q ss_pred cccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccC-CccCCCCCcEEeecCCc
Q 044585 237 LTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVP-ASWHLENLEALKVSKCH 303 (352)
Q Consensus 237 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~ 303 (352)
+.+++|++|++++ +.++.++...+ ..+++|+.|+++++ .++.++. .+..+++|++|++++++
T Consensus 154 ~~l~~L~~L~L~~-n~l~~~~~~~~---~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 154 DKLTSLKELRLYN-NQLKRVPEGAF---DKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTCTTCCEEECCS-SCCSCCCTTTT---TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCcccceeEecC-CcCcEeChhHh---ccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence 4467788888877 36666665555 56778888888877 5566654 35667888888887664
No 79
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.52 E-value=1.3e-13 Score=120.35 Aligned_cols=211 Identities=16% Similarity=0.201 Sum_probs=100.6
Q ss_pred cceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhce-eeeccCccceeEeccCCCcceeccCCCCCCCCCCC
Q 044585 19 NMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYE-VMIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNN 97 (352)
Q Consensus 19 ~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~ 97 (352)
++..+|..+ .++|++|+++++ .+..++. .+..+++|++|+++++. ++.++... + ..+++
T Consensus 18 ~l~~ip~~l--~~~l~~L~ls~n--------------~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~-~--~~l~~ 77 (276)
T 2z62_A 18 NFYKIPDNL--PFSTKNLDLSFN--------------PLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGA-Y--QSLSH 77 (276)
T ss_dssp CCSSCCSSS--CTTCCEEECTTC--------------CCCEECTTTTTTCTTCSEEECTTCC-CCEECTTT-T--TTCTT
T ss_pred CccccCCCC--CCCccEEECCCC--------------cccccCHhHhccccCCcEEECCCCc-CCccCHHH-c--cCCcC
Confidence 344555544 345666776633 2222222 33456666666666664 54443322 2 23566
Q ss_pred ccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccccccccccccCC
Q 044585 98 LRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTG 177 (352)
Q Consensus 98 L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 177 (352)
|++|++++| .+....+. .+..+++|++|++++|.. ..+... .+. .+++|+.|+++++. ++.+....
T Consensus 78 L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~l~~n~l-~~~~~~--------~~~-~l~~L~~L~l~~n~-l~~~~l~~- 143 (276)
T 2z62_A 78 LSTLILTGN-PIQSLALG-AFSGLSSLQKLVAVETNL-ASLENF--------PIG-HLKTLKELNVAHNL-IQSFKLPE- 143 (276)
T ss_dssp CCEEECTTC-CCCEECTT-TTTTCTTCCEEECTTSCC-CCSTTC--------CCT-TCTTCCEEECCSSC-CCCCCCCG-
T ss_pred CCEEECCCC-ccCccChh-hhcCCccccEEECCCCCc-cccCch--------hcc-cCCCCCEEECcCCc-cceecCch-
Confidence 666666665 34443322 245566666666665432 111100 011 45555555555432 22110000
Q ss_pred ceeeccCcceEeeccCCCCcccccchhhhccCCCCCCCCCCccchhhhhcccCCCCCcccccCCcc----eeeccccccc
Q 044585 178 NIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQKLTSEENFLLAHQVQPLFDEKLTFPQLK----ELKLSRLHKV 253 (352)
Q Consensus 178 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~~~~~l~~~~~~~~~~~~~~~~~~~~~L~----~L~l~~~~~l 253 (352)
.+..+++|+.|+++++ .++.+.+..+ ..+++|+ .|++++ +.+
T Consensus 144 ~~~~l~~L~~L~Ls~N-~l~~~~~~~~--------------------------------~~l~~L~~l~l~L~ls~-n~l 189 (276)
T 2z62_A 144 YFSNLTNLEHLDLSSN-KIQSIYCTDL--------------------------------RVLHQMPLLNLSLDLSL-NPM 189 (276)
T ss_dssp GGGGCTTCCEEECCSS-CCCEECGGGG--------------------------------HHHHTCTTCCEEEECCS-SCC
T ss_pred hhccCCCCCEEECCCC-CCCcCCHHHh--------------------------------hhhhhccccceeeecCC-Ccc
Confidence 2334455555555554 2333211111 1222333 566666 355
Q ss_pred ccccccccccccccCCcceEEEecCCCcccccCC-ccCCCCCcEEeecCC
Q 044585 254 QHLWKENDESNKAFANLKSLEIFECSKLQKLVPA-SWHLENLEALKVSKC 302 (352)
Q Consensus 254 ~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~c 302 (352)
+.++...+ ...+|+.|+++++ .++.++.. +..+++|++|+++++
T Consensus 190 ~~~~~~~~----~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 190 NFIQPGAF----KEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp CEECTTSS----CSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSS
T ss_pred cccCcccc----CCCcccEEECCCC-ceeecCHhHhcccccccEEEccCC
Confidence 55554443 3346777777766 35555543 356677777777654
No 80
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.52 E-value=1e-15 Score=143.57 Aligned_cols=125 Identities=18% Similarity=0.235 Sum_probs=62.2
Q ss_pred ecCCccEEeccccccce-----EeccCCCCCCCceEEEecccccCccee----ecC------------ccc----hhhhh
Q 044585 5 EFPSLEQVSMTHCPNMK-----TFSRGISSTPKLYVVQVTEREEGEHHW----EGN------------KLN----STIQK 59 (352)
Q Consensus 5 ~l~~L~~L~l~~~~~l~-----~l~~~~~~~~~L~~L~l~~~~~~~~~~----~~~------------~~~----~~~~~ 59 (352)
.+++|++|++.+| .++ .++..+..+++|++|+++++.+..... ... ..+ .....
T Consensus 26 ~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~ 104 (461)
T 1z7x_W 26 LLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV 104 (461)
T ss_dssp HHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hcCCccEEEccCC-CCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHH
Confidence 4677788888777 344 334445567777777777654322100 000 000 01123
Q ss_pred hceeeeccCccceeEeccCCCcceeccCCCCCC---CCCCCccEEEEecCCCCcccCC---chhhhcCCCCcEEEEccCC
Q 044585 60 CYEVMIGFRDIEHLQLSHFPRLREIWHGQAVPV---SFFNNLRQLAVDDCTNMSSAIP---TNLLRCLNNLRCLEVRNCD 133 (352)
Q Consensus 60 l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~---~~l~~L~~L~l~~c~~l~~~~~---~~~~~~l~~L~~L~l~~~~ 133 (352)
++..+..+++|++|+++++. ++...... +.. ...++|++|++++| .+..... ...+..+++|++|++++|.
T Consensus 105 l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~-l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 181 (461)
T 1z7x_W 105 LSSTLRTLPTLQELHLSDNL-LGDAGLQL-LCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDFKELTVSNND 181 (461)
T ss_dssp HHHHTTSCTTCCEEECCSSB-CHHHHHHH-HHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHccCCceeEEECCCCc-CchHHHHH-HHHHHhcCCCcceEEECCCC-CCCHHHHHHHHHHHhhCCCCCEEECcCCC
Confidence 44445556666666666655 43211110 000 12345777777766 3443221 1223456777777777655
No 81
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.52 E-value=8.7e-14 Score=121.52 Aligned_cols=212 Identities=19% Similarity=0.261 Sum_probs=126.0
Q ss_pred hhhhhceeeeccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCc
Q 044585 56 TIQKCYEVMIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLI 135 (352)
Q Consensus 56 ~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l 135 (352)
.+..+|..+. ++|++|+++++. ++.++... + ..+++|++|++++| .+....+ ..+..+++|++|++++|. +
T Consensus 18 ~l~~ip~~l~--~~l~~L~ls~n~-l~~~~~~~-~--~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~L~~n~-l 88 (276)
T 2z62_A 18 NFYKIPDNLP--FSTKNLDLSFNP-LRHLGSYS-F--FSFPELQVLDLSRC-EIQTIED-GAYQSLSHLSTLILTGNP-I 88 (276)
T ss_dssp CCSSCCSSSC--TTCCEEECTTCC-CCEECTTT-T--TTCTTCSEEECTTC-CCCEECT-TTTTTCTTCCEEECTTCC-C
T ss_pred CccccCCCCC--CCccEEECCCCc-ccccCHhH-h--ccccCCcEEECCCC-cCCccCH-HHccCCcCCCEEECCCCc-c
Confidence 3444554332 467777777765 65544322 2 24677777777776 4554433 225567777777777754 2
Q ss_pred ceeeeeccccccccccCCCCcccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC
Q 044585 136 EEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ 215 (352)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~ 215 (352)
..++. ..+. .+++|+.|++.++. +..+... .+..+++|+.|+++++
T Consensus 89 ~~~~~--------~~~~-~l~~L~~L~l~~n~-l~~~~~~--~~~~l~~L~~L~l~~n---------------------- 134 (276)
T 2z62_A 89 QSLAL--------GAFS-GLSSLQKLVAVETN-LASLENF--PIGHLKTLKELNVAHN---------------------- 134 (276)
T ss_dssp CEECT--------TTTT-TCTTCCEEECTTSC-CCCSTTC--CCTTCTTCCEEECCSS----------------------
T ss_pred CccCh--------hhhc-CCccccEEECCCCC-ccccCch--hcccCCCCCEEECcCC----------------------
Confidence 22211 0011 45666666665542 2221110 2344556666665554
Q ss_pred CCCccchhhhhcccCCCCCcccccCCcceeecccccccccccccccccccccCCcc----eEEEecCCCcccccCCccCC
Q 044585 216 KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLK----SLEIFECSKLQKLVPASWHL 291 (352)
Q Consensus 216 ~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~----~L~l~~c~~l~~l~~~~~~~ 291 (352)
.++.+.... .++.+++|++|+++++ .++.++...+ ..+++|+ .|+++++ .++.++......
T Consensus 135 ---~l~~~~l~~-------~~~~l~~L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~l~l~L~ls~n-~l~~~~~~~~~~ 199 (276)
T 2z62_A 135 ---LIQSFKLPE-------YFSNLTNLEHLDLSSN-KIQSIYCTDL---RVLHQMPLLNLSLDLSLN-PMNFIQPGAFKE 199 (276)
T ss_dssp ---CCCCCCCCG-------GGGGCTTCCEEECCSS-CCCEECGGGG---HHHHTCTTCCEEEECCSS-CCCEECTTSSCS
T ss_pred ---ccceecCch-------hhccCCCCCEEECCCC-CCCcCCHHHh---hhhhhccccceeeecCCC-cccccCccccCC
Confidence 222211000 1355789999999994 6677665555 4555666 7888887 567777665666
Q ss_pred CCCcEEeecCCccccccccccccCccccccEEEEec
Q 044585 292 ENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIAD 327 (352)
Q Consensus 292 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~ 327 (352)
.+|++|+++++. ++.++. ..+..+++|+.|++++
T Consensus 200 ~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 200 IRLKELALDTNQ-LKSVPD-GIFDRLTSLQKIWLHT 233 (276)
T ss_dssp CCEEEEECCSSC-CSCCCT-TTTTTCCSCCEEECCS
T ss_pred CcccEEECCCCc-eeecCH-hHhcccccccEEEccC
Confidence 799999998774 777754 4567889999999995
No 82
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.51 E-value=1e-13 Score=123.18 Aligned_cols=103 Identities=16% Similarity=0.250 Sum_probs=50.7
Q ss_pred eeccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeecc
Q 044585 64 MIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEE 143 (352)
Q Consensus 64 ~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 143 (352)
+..+++|++|+++++. ++.++. . ..+++|++|++++| .+.... .+..+++|++|++++|. ++.++.+.
T Consensus 59 ~~~l~~L~~L~L~~n~-i~~~~~-~----~~l~~L~~L~L~~n-~l~~~~---~~~~l~~L~~L~l~~n~-l~~~~~l~- 126 (308)
T 1h6u_A 59 VQYLNNLIGLELKDNQ-ITDLAP-L----KNLTKITELELSGN-PLKNVS---AIAGLQSIKTLDLTSTQ-ITDVTPLA- 126 (308)
T ss_dssp GGGCTTCCEEECCSSC-CCCCGG-G----TTCCSCCEEECCSC-CCSCCG---GGTTCTTCCEEECTTSC-CCCCGGGT-
T ss_pred hhccCCCCEEEccCCc-CCCChh-H----ccCCCCCEEEccCC-cCCCch---hhcCCCCCCEEECCCCC-CCCchhhc-
Confidence 3455666666666554 444332 1 34566666666665 243322 24456666666666643 22222111
Q ss_pred ccccccccCCCCcccCeeccccccccccccccCCceeeccCcceEeeccC
Q 044585 144 LNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENC 193 (352)
Q Consensus 144 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c 193 (352)
.+++|+.|+++++. +..+. .+..+++|+.|++++|
T Consensus 127 ----------~l~~L~~L~l~~n~-l~~~~----~l~~l~~L~~L~l~~n 161 (308)
T 1h6u_A 127 ----------GLSNLQVLYLDLNQ-ITNIS----PLAGLTNLQYLSIGNA 161 (308)
T ss_dssp ----------TCTTCCEEECCSSC-CCCCG----GGGGCTTCCEEECCSS
T ss_pred ----------CCCCCCEEECCCCc-cCcCc----cccCCCCccEEEccCC
Confidence 45566666665542 22221 1334556666666555
No 83
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.50 E-value=2.1e-13 Score=118.69 Aligned_cols=199 Identities=16% Similarity=0.165 Sum_probs=108.9
Q ss_pred CccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhce-eeeccCccceeEeccCCCcceecc
Q 044585 8 SLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYE-VMIGFRDIEHLQLSHFPRLREIWH 86 (352)
Q Consensus 8 ~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~ 86 (352)
+.+++++.++ .++.+|..+ .++|++|+++++ .+..++. .+..+++|++|+++++. ++.++.
T Consensus 17 ~~~~l~~~~~-~l~~ip~~~--~~~l~~L~l~~n--------------~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~ 78 (270)
T 2o6q_A 17 NKNSVDCSSK-KLTAIPSNI--PADTKKLDLQSN--------------KLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPA 78 (270)
T ss_dssp TTTEEECTTS-CCSSCCSCC--CTTCSEEECCSS--------------CCSCCCTTSSSSCTTCCEEECCSSC-CSCCCT
T ss_pred CCCEEEccCC-CCCccCCCC--CCCCCEEECcCC--------------CCCeeCHHHhcCCCCCCEEECCCCc-cCeeCh
Confidence 4667777765 666666655 356777777743 2233332 34466777777777665 554443
Q ss_pred CCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccc
Q 044585 87 GQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDL 166 (352)
Q Consensus 87 ~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 166 (352)
.. + ..+++|++|+++++ .+...++ ..+..+++|++|+++++. +..++. ..+. .+++|+.|+++++
T Consensus 79 ~~-~--~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~--------~~~~-~l~~L~~L~Ls~n 143 (270)
T 2o6q_A 79 GI-F--KELKNLETLWVTDN-KLQALPI-GVFDQLVNLAELRLDRNQ-LKSLPP--------RVFD-SLTKLTYLSLGYN 143 (270)
T ss_dssp TT-T--SSCTTCCEEECCSS-CCCCCCT-TTTTTCSSCCEEECCSSC-CCCCCT--------TTTT-TCTTCCEEECCSS
T ss_pred hh-h--cCCCCCCEEECCCC-cCCcCCH-hHcccccCCCEEECCCCc-cCeeCH--------HHhC-cCcCCCEEECCCC
Confidence 32 1 23667777777776 3444332 334566777777777653 222211 0011 4556666666554
Q ss_pred cccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCCCCCccchhhhhcccCCCCCcccccCCcceee
Q 044585 167 PKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQKLTSEENFLLAHQVQPLFDEKLTFPQLKELK 246 (352)
Q Consensus 167 ~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ 246 (352)
. ++.++.. .+..+++|+.|+++++ .++.+ .... +..+++|++|+
T Consensus 144 ~-l~~~~~~--~~~~l~~L~~L~L~~n-~l~~~------------------------~~~~--------~~~l~~L~~L~ 187 (270)
T 2o6q_A 144 E-LQSLPKG--VFDKLTSLKELRLYNN-QLKRV------------------------PEGA--------FDKLTELKTLK 187 (270)
T ss_dssp C-CCCCCTT--TTTTCTTCCEEECCSS-CCSCC------------------------CTTT--------TTTCTTCCEEE
T ss_pred c-CCccCHh--HccCCcccceeEecCC-cCcEe------------------------ChhH--------hccCCCcCEEE
Confidence 2 3322211 1334455555555554 23322 2111 23457788888
Q ss_pred cccccccccccccccccccccCCcceEEEecCC
Q 044585 247 LSRLHKVQHLWKENDESNKAFANLKSLEIFECS 279 (352)
Q Consensus 247 l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~ 279 (352)
++++ .++.++...+ ..+++|+.|++++++
T Consensus 188 L~~N-~l~~~~~~~~---~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 188 LDNN-QLKRVPEGAF---DSLEKLKMLQLQENP 216 (270)
T ss_dssp CCSS-CCSCCCTTTT---TTCTTCCEEECCSSC
T ss_pred CCCC-cCCcCCHHHh---ccccCCCEEEecCCC
Confidence 8874 6666666555 567788888887764
No 84
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.49 E-value=2.1e-16 Score=148.30 Aligned_cols=114 Identities=13% Similarity=0.140 Sum_probs=69.6
Q ss_pred cCCccEEeccccccceEec--cCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcce
Q 044585 6 FPSLEQVSMTHCPNMKTFS--RGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLRE 83 (352)
Q Consensus 6 l~~L~~L~l~~~~~l~~l~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~ 83 (352)
.++|++|++.++ .++..+ ..+..+++|++|++++|.+.. .....++..+..+++|++|+++++. +.+
T Consensus 2 ~~~l~~L~Ls~~-~l~~~~~~~~~~~~~~L~~L~L~~~~l~~---------~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~ 70 (461)
T 1z7x_W 2 SLDIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCGLTE---------ARCKDISSALRVNPALAELNLRSNE-LGD 70 (461)
T ss_dssp CEEEEEEEEESC-CCCHHHHHHHHHHHTTCSEEEEESSCCCH---------HHHHHHHHHHHTCTTCCEEECTTCC-CHH
T ss_pred Cccceehhhhhc-ccCchhHHHHHhhcCCccEEEccCCCCCH---------HHHHHHHHHHHhCCCcCEEeCCCCc-CCh
Confidence 468999999888 555333 224579999999999764332 1222445555567888888888776 543
Q ss_pred eccCCCCCCCCCC----CccEEEEecCCCCcccC---CchhhhcCCCCcEEEEccCC
Q 044585 84 IWHGQAVPVSFFN----NLRQLAVDDCTNMSSAI---PTNLLRCLNNLRCLEVRNCD 133 (352)
Q Consensus 84 ~~~~~~l~~~~l~----~L~~L~l~~c~~l~~~~---~~~~~~~l~~L~~L~l~~~~ 133 (352)
..... +. ..++ +|++|++++| .+.... ....+..+++|++|++++|.
T Consensus 71 ~~~~~-l~-~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 124 (461)
T 1z7x_W 71 VGVHC-VL-QGLQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDNL 124 (461)
T ss_dssp HHHHH-HH-HTTCSTTCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred HHHHH-HH-HHHhhCCCceeEEEccCC-CCCHHHHHHHHHHHccCCceeEEECCCCc
Confidence 21110 10 0122 6888888887 344321 11235677788888888765
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.48 E-value=2.7e-15 Score=137.63 Aligned_cols=277 Identities=11% Similarity=0.061 Sum_probs=141.4
Q ss_pred eEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCC--Ccce-eccCCC-CCC--CC
Q 044585 21 KTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFP--RLRE-IWHGQA-VPV--SF 94 (352)
Q Consensus 21 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~--~l~~-~~~~~~-l~~--~~ 94 (352)
..++..+..+++|++|++++|.+.. .....++..+..+++|++|++++|. .+.. ++.+.. ++. ..
T Consensus 22 ~~l~~~l~~~~~L~~L~L~~n~i~~---------~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~ 92 (386)
T 2ca6_A 22 KSVFAVLLEDDSVKEIVLSGNTIGT---------EAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLK 92 (386)
T ss_dssp HTTSHHHHHCSCCCEEECTTSEECH---------HHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCccEEECCCCCCCH---------HHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhh
Confidence 3444444556777777777432211 1111233334456777777777653 1111 010000 000 24
Q ss_pred CCCccEEEEecCCCCcccC---CchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCC---------cccCeec
Q 044585 95 FNNLRQLAVDDCTNMSSAI---PTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRF---------PRLNRLR 162 (352)
Q Consensus 95 l~~L~~L~l~~c~~l~~~~---~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~---------~~L~~L~ 162 (352)
+++|++|++++| .+.... ....+..+++|++|++++|.. ..... ......+. .+ ++|++|+
T Consensus 93 ~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l-~~~~~----~~l~~~l~-~l~~~~~~~~~~~L~~L~ 165 (386)
T 2ca6_A 93 CPKLHTVRLSDN-AFGPTAQEPLIDFLSKHTPLEHLYLHNNGL-GPQAG----AKIARALQ-ELAVNKKAKNAPPLRSII 165 (386)
T ss_dssp CTTCCEEECCSC-CCCTTTHHHHHHHHHHCTTCCEEECCSSCC-HHHHH----HHHHHHHH-HHHHHHHHHTCCCCCEEE
T ss_pred CCcccEEECCCC-cCCHHHHHHHHHHHHhCCCCCEEECcCCCC-CHHHH----HHHHHHHH-HHhhhhhcccCCCCcEEE
Confidence 577777777776 344311 011245677777777777653 21100 00000000 22 6777777
Q ss_pred ccccccc-ccccccCCceeeccCcceEeeccCCCCcc-----cccchhhhccCCCCCCC-CCCccch-----hhhhcccC
Q 044585 163 LIDLPKL-KRFCNFTGNIIELSELENLTIENCPDMET-----FISNSVVHVTTNNKEPQ-KLTSEEN-----FLLAHQVQ 230 (352)
Q Consensus 163 l~~~~~l-~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-----~~~~~~~~~~~~L~~L~-~~~~l~~-----~~~~~~~~ 230 (352)
++++.-- ..+......+..+++|+.|.+++| .+++ +.+..+ ..+++|+.|+ +.+.++. ++..
T Consensus 166 L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l-~~~~~L~~L~Ls~n~l~~~g~~~l~~~---- 239 (386)
T 2ca6_A 166 CGRNRLENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGL-AYCQELKVLDLQDNTFTHLGSSALAIA---- 239 (386)
T ss_dssp CCSSCCTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTG-GGCTTCCEEECCSSCCHHHHHHHHHHH----
T ss_pred CCCCCCCcHHHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHh-hcCCCccEEECcCCCCCcHHHHHHHHH----
Confidence 7765421 111100002345678888888777 4442 112122 3667777777 5555532 2221
Q ss_pred CCCCcccccCCcceeecccccccccccccccccc-c--ccCCcceEEEecCCCccc-----ccCCc-cCCCCCcEEeecC
Q 044585 231 PLFDEKLTFPQLKELKLSRLHKVQHLWKENDESN-K--AFANLKSLEIFECSKLQK-----LVPAS-WHLENLEALKVSK 301 (352)
Q Consensus 231 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~-~--~~~~L~~L~l~~c~~l~~-----l~~~~-~~~~~L~~L~l~~ 301 (352)
+..+++|++|++++|. ++......++.. . .+++|+.|++++|. ++. ++..+ ..+++|++|++++
T Consensus 240 -----l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~ 312 (386)
T 2ca6_A 240 -----LKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNG 312 (386)
T ss_dssp -----GGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred -----HccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccC
Confidence 3567899999999863 444311111000 1 27899999999984 454 66555 4589999999988
Q ss_pred Cccccccc--cccccCccccccEEEEec
Q 044585 302 CHRLINLL--TLSTSRSLIILQSMTIAD 327 (352)
Q Consensus 302 c~~l~~~~--~~~~~~~l~~L~~L~i~~ 327 (352)
|+- +... ...+...+++++.+.+..
T Consensus 313 N~l-~~~~~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 313 NRF-SEEDDVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp SBS-CTTSHHHHHHHHHHHHHTCCEECC
T ss_pred CcC-CcchhHHHHHHHHhhhcCcchhhh
Confidence 753 3332 123344455566555544
No 86
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.47 E-value=5.2e-13 Score=117.47 Aligned_cols=178 Identities=15% Similarity=0.146 Sum_probs=112.4
Q ss_pred eecCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcce
Q 044585 4 LEFPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLRE 83 (352)
Q Consensus 4 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~ 83 (352)
..+++++++++.++ +++.+|..+ .+++++|+++++.+... .+..+..+++|++|+++++. ++.
T Consensus 7 ~~l~~l~~l~~~~~-~l~~ip~~~--~~~l~~L~L~~N~l~~~-------------~~~~~~~l~~L~~L~L~~n~-l~~ 69 (290)
T 1p9a_G 7 SKVASHLEVNCDKR-NLTALPPDL--PKDTTILHLSENLLYTF-------------SLATLMPYTRLTQLNLDRAE-LTK 69 (290)
T ss_dssp ECSTTCCEEECTTS-CCSSCCSCC--CTTCCEEECTTSCCSEE-------------EGGGGTTCTTCCEEECTTSC-CCE
T ss_pred cccCCccEEECCCC-CCCcCCCCC--CCCCCEEEcCCCcCCcc-------------CHHHhhcCCCCCEEECCCCc-cCc
Confidence 35788999999887 788888766 47899999995432221 12345578899999999887 766
Q ss_pred eccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeecc
Q 044585 84 IWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRL 163 (352)
Q Consensus 84 ~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l 163 (352)
++.. +.+++|++|+++++ .+...+ . .+..+++|++|++++|. ++.++. ..+. .+++|+.|++
T Consensus 70 ~~~~-----~~l~~L~~L~Ls~N-~l~~l~-~-~~~~l~~L~~L~l~~N~-l~~l~~--------~~~~-~l~~L~~L~L 131 (290)
T 1p9a_G 70 LQVD-----GTLPVLGTLDLSHN-QLQSLP-L-LGQTLPALTVLDVSFNR-LTSLPL--------GALR-GLGELQELYL 131 (290)
T ss_dssp EECC-----SCCTTCCEEECCSS-CCSSCC-C-CTTTCTTCCEEECCSSC-CCCCCS--------STTT-TCTTCCEEEC
T ss_pred ccCC-----CCCCcCCEEECCCC-cCCcCc-h-hhccCCCCCEEECCCCc-CcccCH--------HHHc-CCCCCCEEEC
Confidence 5443 36788999999987 555443 2 25678889999998864 333321 0111 5677888887
Q ss_pred ccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccc
Q 044585 164 IDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEE 221 (352)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~ 221 (352)
+++. ++.++.. .+..+++|+.|+++++ .++.+ |...+..+++|+.|+ ..+.++
T Consensus 132 ~~N~-l~~~~~~--~~~~l~~L~~L~L~~N-~l~~l-~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 132 KGNE-LKTLPPG--LLTPTPKLEKLSLANN-NLTEL-PAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp TTSC-CCCCCTT--TTTTCTTCCEEECTTS-CCSCC-CTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCC-CCccChh--hcccccCCCEEECCCC-cCCcc-CHHHhcCcCCCCEEECCCCcCC
Confidence 7653 4433221 2445677777777776 45544 433333445555554 444444
No 87
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.46 E-value=2.1e-12 Score=125.62 Aligned_cols=205 Identities=15% Similarity=0.077 Sum_probs=116.5
Q ss_pred CCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeecccccccccccc
Q 044585 94 FFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFC 173 (352)
Q Consensus 94 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 173 (352)
.+++|+.|+++.+..............+.+|+.+++..+........ +. .+++|+.+++.++.......
T Consensus 369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~----------~~-~l~~L~~l~l~~~~~~~~~~ 437 (635)
T 4g8a_A 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSN----------FL-GLEQLEHLDFQHSNLKQMSE 437 (635)
T ss_dssp BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSC----------CT-TCTTCCEEECTTSEEESTTS
T ss_pred cccccccchhhccccccccccccchhhhhhhhhhhcccccccccccc----------cc-ccccccchhhhhcccccccc
Confidence 45566666666542211111111233455666666655432211101 11 56677777776554333221
Q ss_pred ccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCc-cchhhhhcccCCCCCcccccCCcceeeccccc
Q 044585 174 NFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTS-EENFLLAHQVQPLFDEKLTFPQLKELKLSRLH 251 (352)
Q Consensus 174 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~-l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 251 (352)
. . .+..+++++.++++.+ .+... +......+++|+.|+ ..+. ...+.... +..+++|++|+++++
T Consensus 438 ~-~-~~~~l~~l~~l~ls~n-~l~~~-~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~--------~~~l~~L~~L~Ls~N- 504 (635)
T 4g8a_A 438 F-S-VFLSLRNLIYLDISHT-HTRVA-FNGIFNGLSSLEVLKMAGNSFQENFLPDI--------FTELRNLTFLDLSQC- 504 (635)
T ss_dssp S-C-TTTTCTTCCEEECTTS-CCEEC-CTTTTTTCTTCCEEECTTCEEGGGEECSC--------CTTCTTCCEEECTTS-
T ss_pred c-c-cccccccccccccccc-ccccc-cccccccchhhhhhhhhhcccccccCchh--------hhhccccCEEECCCC-
Confidence 1 1 3445667777777665 34443 233334667777777 4333 22222211 356778888888884
Q ss_pred ccccccccccccccccCCcceEEEecCCCcccccC-CccCCCCCcEEeecCCccccccccccccCcc-ccccEEEEecc
Q 044585 252 KVQHLWKENDESNKAFANLKSLEIFECSKLQKLVP-ASWHLENLEALKVSKCHRLINLLTLSTSRSL-IILQSMTIADC 328 (352)
Q Consensus 252 ~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l-~~L~~L~i~~c 328 (352)
.++.++...+ ..+++|+.|+++++ +++.++. .+..+++|++|+++++ +++.+++. .+..+ ++|+.|+++++
T Consensus 505 ~L~~l~~~~f---~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~-~l~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 505 QLEQLSPTAF---NSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQ-ELQHFPSSLAFLNLTQN 577 (635)
T ss_dssp CCCEECTTTT---TTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTS-CCCBCCSS-CTTCCCTTCCEEECTTC
T ss_pred ccCCcChHHH---cCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCC-cCCCCCHH-HHHhhhCcCCEEEeeCC
Confidence 6777766666 67888888888887 5666654 4677888888888665 55666443 33444 57888888763
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.45 E-value=5.9e-13 Score=118.28 Aligned_cols=210 Identities=17% Similarity=0.137 Sum_probs=107.6
Q ss_pred CCccEEEEecCCCCcccCCchhh-hcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccccccccccc
Q 044585 96 NNLRQLAVDDCTNMSSAIPTNLL-RCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCN 174 (352)
Q Consensus 96 ~~L~~L~l~~c~~l~~~~~~~~~-~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 174 (352)
++|++|++++| .+....+...+ ..+++|++|++++|......+.... ..+. .+++|++|+++++. +..+..
T Consensus 91 ~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~-----~~~~-~~~~L~~L~Ls~n~-l~~~~~ 162 (310)
T 4glp_A 91 SRLKELTLEDL-KITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAE-----LQQW-LKPGLKVLSIAQAH-SPAFSC 162 (310)
T ss_dssp SCCCEEEEESC-CCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHH-----HHTT-BCSCCCEEEEECCS-SCCCCT
T ss_pred CceeEEEeeCC-EeccchhhhhhhccCCCCCEEEeecccccchhhhhHH-----HHhh-hccCCCEEEeeCCC-cchhhH
Confidence 44666666665 34433333211 4556666666666542211100000 0001 35566666665543 222211
Q ss_pred cCCceeeccCcceEeeccCCCCcc--cccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCcceeeccccc
Q 044585 175 FTGNIIELSELENLTIENCPDMET--FISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLH 251 (352)
Q Consensus 175 ~~~~~~~~~~L~~L~l~~c~~l~~--~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 251 (352)
. .+..+++|+.|+++++.-... +.+......+++|++|+ +.+.++.+...... -++.+++|++|+++++
T Consensus 163 ~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-----l~~~l~~L~~L~Ls~N- 234 (310)
T 4glp_A 163 E--QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAA-----LAAAGVQPHSLDLSHN- 234 (310)
T ss_dssp T--SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHH-----HHHHTCCCSSEECTTS-
T ss_pred H--HhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHH-----HHhcCCCCCEEECCCC-
Confidence 1 344566677777766642221 11112223566677776 54555433221000 0134578888888874
Q ss_pred ccccc-cccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCccccccccccccCccccccEEEEeccc
Q 044585 252 KVQHL-WKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIADCK 329 (352)
Q Consensus 252 ~l~~l-~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 329 (352)
.++.. +.... ....+++|++|+++++ .++.+|..+ .++|++|+++++ +++.++. +..+++|+.|++++++
T Consensus 235 ~l~~~~p~~~~-~~~~~~~L~~L~Ls~N-~l~~lp~~~--~~~L~~L~Ls~N-~l~~~~~---~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 235 SLRATVNPSAP-RCMWSSALNSLNLSFA-GLEQVPKGL--PAKLRVLDLSSN-RLNRAPQ---PDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCCCCCCSCCS-SCCCCTTCCCEECCSS-CCCSCCSCC--CSCCSCEECCSC-CCCSCCC---TTSCCCCSCEECSSTT
T ss_pred CCCccchhhHH-hccCcCcCCEEECCCC-CCCchhhhh--cCCCCEEECCCC-cCCCCch---hhhCCCccEEECcCCC
Confidence 55554 32211 0012368888888877 566777654 378888888666 4555532 4567788888887764
No 89
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.44 E-value=1.9e-13 Score=119.13 Aligned_cols=56 Identities=13% Similarity=0.078 Sum_probs=35.2
Q ss_pred cccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCc
Q 044585 237 LTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCH 303 (352)
Q Consensus 237 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~ 303 (352)
+.+++|++|+++++ .++.++...+ ..+++|+.|++++++. .+.+++|+.++++.+.
T Consensus 178 ~~l~~L~~L~L~~N-~l~~~~~~~~---~~l~~L~~L~l~~N~~-------~~~~~~l~~l~~~~n~ 233 (272)
T 3rfs_A 178 DKLTQLKDLRLYQN-QLKSVPDGVF---DRLTSLQYIWLHDNPW-------DCTCPGIRYLSEWINK 233 (272)
T ss_dssp TTCTTCCEEECCSS-CCSCCCTTTT---TTCTTCCEEECCSSCB-------CCCTTTTHHHHHHHHH
T ss_pred cCCccCCEEECCCC-cCCccCHHHH---hCCcCCCEEEccCCCc-------cccCcHHHHHHHHHHh
Confidence 44567777777773 5555655544 5677777777777632 1446667777775543
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.43 E-value=3.7e-13 Score=119.65 Aligned_cols=209 Identities=16% Similarity=0.153 Sum_probs=137.9
Q ss_pred ccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCC---chhhhcCCCCcEEEEccCCCcceeeeec
Q 044585 66 GFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIP---TNLLRCLNNLRCLEVRNCDLIEEVLHLE 142 (352)
Q Consensus 66 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~---~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 142 (352)
.+++|++|+++++. +....... +....+++|++|++++| .+....+ ...+..+++|++|++++|.. ..++.
T Consensus 89 ~~~~L~~L~l~~n~-l~~~~~~~-~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l-~~~~~-- 162 (310)
T 4glp_A 89 AYSRLKELTLEDLK-ITGTMPPL-PLEATGLALSSLRLRNV-SWATGRSWLAELQQWLKPGLKVLSIAQAHS-PAFSC-- 162 (310)
T ss_dssp HHSCCCEEEEESCC-CBSCCCCC-SSSCCCBCCSSCEEESC-CCSSTTSSHHHHHTTBCSCCCEEEEECCSS-CCCCT--
T ss_pred ccCceeEEEeeCCE-eccchhhh-hhhccCCCCCEEEeecc-cccchhhhhHHHHhhhccCCCEEEeeCCCc-chhhH--
Confidence 45679999999887 54332222 21135889999999998 4554332 11234689999999998764 32211
Q ss_pred cccccccccCCCCcccCeecccccccccc--ccccCCceeeccCcceEeeccCCCCcccc--cchhhhccCCCCCCC-CC
Q 044585 143 ELNAKEEHIGPRFPRLNRLRLIDLPKLKR--FCNFTGNIIELSELENLTIENCPDMETFI--SNSVVHVTTNNKEPQ-KL 217 (352)
Q Consensus 143 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~~~~~~~~L~~L~-~~ 217 (352)
..++ .+++|++|+++++.-... +.... ....+++|+.|.+++| .++.+. +..+...+++|++|+ +.
T Consensus 163 ------~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~-~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~ 233 (310)
T 4glp_A 163 ------EQVR-AFPALTSLDLSDNPGLGERGLMAAL-CPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSH 233 (310)
T ss_dssp ------TSCC-CCTTCCEEECCSCTTCHHHHHHTTS-CTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTT
T ss_pred ------HHhc-cCCCCCEEECCCCCCccchhhhHHH-hhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCC
Confidence 1112 688999999998753321 21111 2356789999999998 555431 122445779999999 77
Q ss_pred CccchhhhhcccCCCCCcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEE
Q 044585 218 TSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEAL 297 (352)
Q Consensus 218 ~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L 297 (352)
+.++...+.. +..+..+++|++|++++ +.++.++.. .+++|+.|+++++ .++.+|. +..+++|++|
T Consensus 234 N~l~~~~p~~-----~~~~~~~~~L~~L~Ls~-N~l~~lp~~------~~~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L 299 (310)
T 4glp_A 234 NSLRATVNPS-----APRCMWSSALNSLNLSF-AGLEQVPKG------LPAKLRVLDLSSN-RLNRAPQ-PDELPEVDNL 299 (310)
T ss_dssp SCCCCCCCSC-----CSSCCCCTTCCCEECCS-SCCCSCCSC------CCSCCSCEECCSC-CCCSCCC-TTSCCCCSCE
T ss_pred CCCCccchhh-----HHhccCcCcCCEEECCC-CCCCchhhh------hcCCCCEEECCCC-cCCCCch-hhhCCCccEE
Confidence 7776653221 11122247999999998 577777644 3489999999998 5677654 5788999999
Q ss_pred eecCCc
Q 044585 298 KVSKCH 303 (352)
Q Consensus 298 ~l~~c~ 303 (352)
++++++
T Consensus 300 ~L~~N~ 305 (310)
T 4glp_A 300 TLDGNP 305 (310)
T ss_dssp ECSSTT
T ss_pred ECcCCC
Confidence 997764
No 91
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.42 E-value=1.4e-12 Score=113.70 Aligned_cols=177 Identities=18% Similarity=0.212 Sum_probs=103.9
Q ss_pred CCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeecccccccccccc
Q 044585 94 FFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFC 173 (352)
Q Consensus 94 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 173 (352)
.+++|++|.+.+| .+.... .+..+++|++|++++|. +..+..+. .+++|++|+++++. ++.+.
T Consensus 39 ~l~~L~~L~l~~~-~i~~~~---~l~~l~~L~~L~l~~n~-l~~~~~l~-----------~l~~L~~L~L~~n~-l~~~~ 101 (272)
T 3rfs_A 39 ELNSIDQIIANNS-DIKSVQ---GIQYLPNVRYLALGGNK-LHDISALK-----------ELTNLTYLILTGNQ-LQSLP 101 (272)
T ss_dssp HHTTCCEEECTTS-CCCCCT---TGGGCTTCCEEECTTSC-CCCCGGGT-----------TCTTCCEEECTTSC-CCCCC
T ss_pred cccceeeeeeCCC-Cccccc---ccccCCCCcEEECCCCC-CCCchhhc-----------CCCCCCEEECCCCc-cCccC
Confidence 3555666666655 233322 13456666666666543 22221111 45666666665542 33322
Q ss_pred ccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCcceeecccccc
Q 044585 174 NFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHK 252 (352)
Q Consensus 174 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 252 (352)
.. .+..+++|+.|+++++ .++.+ +...+..+++|+.|+ ..+.++.+.... ++.+++|++|+++++ .
T Consensus 102 ~~--~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~--------~~~l~~L~~L~l~~n-~ 168 (272)
T 3rfs_A 102 NG--VFDKLTNLKELVLVEN-QLQSL-PDGVFDKLTNLTYLNLAHNQLQSLPKGV--------FDKLTNLTELDLSYN-Q 168 (272)
T ss_dssp TT--TTTTCTTCCEEECTTS-CCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTT--------TTTCTTCCEEECCSS-C
T ss_pred hh--HhcCCcCCCEEECCCC-cCCcc-CHHHhccCCCCCEEECCCCccCccCHHH--------hccCccCCEEECCCC-C
Confidence 11 2344566777777666 34443 333333566666666 444554433221 355789999999995 6
Q ss_pred cccccccccccccccCCcceEEEecCCCcccccC-CccCCCCCcEEeecCCcc
Q 044585 253 VQHLWKENDESNKAFANLKSLEIFECSKLQKLVP-ASWHLENLEALKVSKCHR 304 (352)
Q Consensus 253 l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~ 304 (352)
++.++...+ ..+++|+.|++++| .++.++. .+..+++|++|++++++-
T Consensus 169 l~~~~~~~~---~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 169 LQSLPEGVF---DKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp CCCCCTTTT---TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cCccCHHHh---cCCccCCEEECCCC-cCCccCHHHHhCCcCCCEEEccCCCc
Confidence 777776655 57899999999988 4566654 467899999999988753
No 92
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.37 E-value=1.1e-13 Score=126.85 Aligned_cols=254 Identities=14% Similarity=0.119 Sum_probs=158.8
Q ss_pred chhhhhhceeeeccCccceeEeccCCCcceeccCCCCC--CCCCCCccEEEEecCC--CCcccCCchh------hhcCCC
Q 044585 54 NSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWHGQAVP--VSFFNNLRQLAVDDCT--NMSSAIPTNL------LRCLNN 123 (352)
Q Consensus 54 ~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~--~~~l~~L~~L~l~~c~--~l~~~~~~~~------~~~l~~ 123 (352)
...+..++..+..+++|++|++++|. ++...... ++ -..+++|++|++++|. .+....|.+. +..+++
T Consensus 18 ~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~-l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~ 95 (386)
T 2ca6_A 18 TEDEKSVFAVLLEDDSVKEIVLSGNT-IGTEAARW-LSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPK 95 (386)
T ss_dssp SHHHHTTSHHHHHCSCCCEEECTTSE-ECHHHHHH-HHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHhcCCCccEEECCCCC-CCHHHHHH-HHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCc
Confidence 34566677777788999999999986 65421110 00 0358899999999972 3333333332 367899
Q ss_pred CcEEEEccCCCcceeeeeccccccccccCCCCcccCeecccccccccccccc--CCceeec---------cCcceEeecc
Q 044585 124 LRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNF--TGNIIEL---------SELENLTIEN 192 (352)
Q Consensus 124 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~~~---------~~L~~L~l~~ 192 (352)
|++|++++|..-.. +.......+. .+++|++|+++++.- ...... ...+..+ ++|+.|.+++
T Consensus 96 L~~L~Ls~n~l~~~-----~~~~l~~~l~-~~~~L~~L~L~~n~l-~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~ 168 (386)
T 2ca6_A 96 LHTVRLSDNAFGPT-----AQEPLIDFLS-KHTPLEHLYLHNNGL-GPQAGAKIARALQELAVNKKAKNAPPLRSIICGR 168 (386)
T ss_dssp CCEEECCSCCCCTT-----THHHHHHHHH-HCTTCCEEECCSSCC-HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS
T ss_pred ccEEECCCCcCCHH-----HHHHHHHHHH-hCCCCCEEECcCCCC-CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCC
Confidence 99999999763221 0000111122 688999999998752 211000 0012233 8999999999
Q ss_pred CCCCc-ccccc--hhhhccCCCCCCC-CCCccchhhhhcccCCCCC-cccccCCcceeeccccccc-----ccccccccc
Q 044585 193 CPDME-TFISN--SVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFD-EKLTFPQLKELKLSRLHKV-----QHLWKENDE 262 (352)
Q Consensus 193 c~~l~-~~~~~--~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l-----~~l~~~~~~ 262 (352)
|. ++ ...+. .....+++|+.|+ ..+.++...... ..+ .+..+++|+.|+++++. + ..++. .+
T Consensus 169 n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~----l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~-~l- 240 (386)
T 2ca6_A 169 NR-LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEH----LLLEGLAYCQELKVLDLQDNT-FTHLGSSALAI-AL- 240 (386)
T ss_dssp SC-CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHH----HHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHH-HG-
T ss_pred CC-CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHH----HHHHHhhcCCCccEEECcCCC-CCcHHHHHHHH-HH-
Confidence 84 44 22221 2334778999998 655665321000 000 14668999999999964 4 33433 23
Q ss_pred cccccCCcceEEEecCCCccc-----ccCCc--cCCCCCcEEeecCCccccc-----cccccccCccccccEEEEeccc
Q 044585 263 SNKAFANLKSLEIFECSKLQK-----LVPAS--WHLENLEALKVSKCHRLIN-----LLTLSTSRSLIILQSMTIADCK 329 (352)
Q Consensus 263 ~~~~~~~L~~L~l~~c~~l~~-----l~~~~--~~~~~L~~L~l~~c~~l~~-----~~~~~~~~~l~~L~~L~i~~c~ 329 (352)
..+++|+.|++++|. ++. ++..+ +.+++|++|++++|. ++. ++ ..+..++++|+.|++++|+
T Consensus 241 --~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~-~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 241 --KSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLK-TVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp --GGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHH-HHHHHHCTTCCEEECTTSB
T ss_pred --ccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHH-HHHHhcCCCceEEEccCCc
Confidence 578999999999985 443 34444 348999999998875 444 42 2333567999999999975
No 93
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.36 E-value=1.7e-12 Score=107.44 Aligned_cols=149 Identities=14% Similarity=0.239 Sum_probs=71.8
Q ss_pred cCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceec
Q 044585 6 FPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIW 85 (352)
Q Consensus 6 l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~ 85 (352)
+++|++|++.+| .++.++ .+..+++|++|++++|. +..++ .+..+++|++|+++++. ++...
T Consensus 43 l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~~n~--------------~~~~~-~l~~l~~L~~L~l~~n~-l~~~~ 104 (197)
T 4ezg_A 43 MNSLTYITLANI-NVTDLT-GIEYAHNIKDLTINNIH--------------ATNYN-PISGLSNLERLRIMGKD-VTSDK 104 (197)
T ss_dssp HHTCCEEEEESS-CCSCCT-TGGGCTTCSEEEEESCC--------------CSCCG-GGTTCTTCCEEEEECTT-CBGGG
T ss_pred cCCccEEeccCC-CccChH-HHhcCCCCCEEEccCCC--------------CCcch-hhhcCCCCCEEEeECCc-cCccc
Confidence 456666666665 455555 45556666666666331 11111 23345666666666554 43211
Q ss_pred cCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeecccc
Q 044585 86 HGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLID 165 (352)
Q Consensus 86 ~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 165 (352)
... + ..+++|++|++++| .+....+ ..+..+++|++|++++|..+..++.+. .+++|+.|++++
T Consensus 105 ~~~-l--~~l~~L~~L~Ls~n-~i~~~~~-~~l~~l~~L~~L~L~~n~~i~~~~~l~-----------~l~~L~~L~l~~ 168 (197)
T 4ezg_A 105 IPN-L--SGLTSLTLLDISHS-AHDDSIL-TKINTLPKVNSIDLSYNGAITDIMPLK-----------TLPELKSLNIQF 168 (197)
T ss_dssp SCC-C--TTCTTCCEEECCSS-BCBGGGH-HHHTTCSSCCEEECCSCTBCCCCGGGG-----------GCSSCCEEECTT
T ss_pred Chh-h--cCCCCCCEEEecCC-ccCcHhH-HHHhhCCCCCEEEccCCCCccccHhhc-----------CCCCCCEEECCC
Confidence 111 1 24556666666665 3333222 224455666666666654344332211 455566665555
Q ss_pred ccccccccccCCceeeccCcceEeeccC
Q 044585 166 LPKLKRFCNFTGNIIELSELENLTIENC 193 (352)
Q Consensus 166 ~~~l~~~~~~~~~~~~~~~L~~L~l~~c 193 (352)
+. +..+. .+..+++|+.|+++++
T Consensus 169 n~-i~~~~----~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 169 DG-VHDYR----GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp BC-CCCCT----TGGGCSSCCEEEECBC
T ss_pred CC-CcChH----HhccCCCCCEEEeeCc
Confidence 42 22221 2334555555555544
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.31 E-value=1.3e-11 Score=106.21 Aligned_cols=60 Identities=23% Similarity=0.297 Sum_probs=31.7
Q ss_pred cCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccC-CccCCCCCcEEeecCCc
Q 044585 239 FPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVP-ASWHLENLEALKVSKCH 303 (352)
Q Consensus 239 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~ 303 (352)
+++|++|++++ +.++.++...+ ..+++|+.|+++++ .++.++. .+..+++|++|++++++
T Consensus 130 l~~L~~L~Ls~-N~l~~~~~~~~---~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 130 LTKLKELRLNT-NQLQSIPAGAF---DKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CTTCCEEECCS-SCCCCCCTTTT---TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CCcccEEECcC-CcCCccCHHHc---CcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCc
Confidence 45566666655 34555544433 45556666666655 3444433 34455666666665543
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.31 E-value=6.4e-12 Score=110.56 Aligned_cols=144 Identities=18% Similarity=0.243 Sum_probs=71.9
Q ss_pred eccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccc
Q 044585 65 IGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEEL 144 (352)
Q Consensus 65 ~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 144 (352)
..+++|++|+++++. ++..+. . ..+++|++|++++| .+..... +..+++|++|++++|. +..+..+.
T Consensus 65 ~~l~~L~~L~L~~n~-l~~~~~-l----~~l~~L~~L~l~~n-~l~~~~~---l~~l~~L~~L~L~~n~-i~~~~~l~-- 131 (291)
T 1h6t_A 65 QYLPNVTKLFLNGNK-LTDIKP-L----ANLKNLGWLFLDEN-KVKDLSS---LKDLKKLKSLSLEHNG-ISDINGLV-- 131 (291)
T ss_dssp GGCTTCCEEECCSSC-CCCCGG-G----TTCTTCCEEECCSS-CCCCGGG---GTTCTTCCEEECTTSC-CCCCGGGG--
T ss_pred hcCCCCCEEEccCCc-cCCCcc-c----ccCCCCCEEECCCC-cCCCChh---hccCCCCCEEECCCCc-CCCChhhc--
Confidence 345666666666554 443322 1 34566666666665 3433221 4456666666666653 33221111
Q ss_pred cccccccCCCCcccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchh
Q 044585 145 NAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENF 223 (352)
Q Consensus 145 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~ 223 (352)
.+++|+.|+++++. ++.+ . .+..+++|+.|++++| .++.+.+ ...+++|+.|+ +.+.++.+
T Consensus 132 ---------~l~~L~~L~l~~n~-l~~~-~---~l~~l~~L~~L~L~~N-~l~~~~~---l~~l~~L~~L~L~~N~i~~l 193 (291)
T 1h6t_A 132 ---------HLPQLESLYLGNNK-ITDI-T---VLSRLTKLDTLSLEDN-QISDIVP---LAGLTKLQNLYLSKNHISDL 193 (291)
T ss_dssp ---------GCTTCCEEECCSSC-CCCC-G---GGGGCTTCSEEECCSS-CCCCCGG---GTTCTTCCEEECCSSCCCBC
T ss_pred ---------CCCCCCEEEccCCc-CCcc-h---hhccCCCCCEEEccCC-ccccchh---hcCCCccCEEECCCCcCCCC
Confidence 46666666666542 3332 1 3455677777777766 4444322 22444444444 33333322
Q ss_pred hhhcccCCCCCcccccCCcceeeccc
Q 044585 224 LLAHQVQPLFDEKLTFPQLKELKLSR 249 (352)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~L~~L~l~~ 249 (352)
. ++..+++|+.|++++
T Consensus 194 ~----------~l~~l~~L~~L~l~~ 209 (291)
T 1h6t_A 194 R----------ALAGLKNLDVLELFS 209 (291)
T ss_dssp G----------GGTTCTTCSEEEEEE
T ss_pred h----------hhccCCCCCEEECcC
Confidence 1 123455666666665
No 96
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.30 E-value=2.4e-11 Score=100.50 Aligned_cols=57 Identities=19% Similarity=0.188 Sum_probs=28.8
Q ss_pred cCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCC
Q 044585 239 FPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKC 302 (352)
Q Consensus 239 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c 302 (352)
+++|++|++++|..++.++ .+ ..+++|+.|++++| .++.++ .+..+++|++|+++++
T Consensus 135 l~~L~~L~L~~n~~i~~~~--~l---~~l~~L~~L~l~~n-~i~~~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 135 LPKVNSIDLSYNGAITDIM--PL---KTLPELKSLNIQFD-GVHDYR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp CSSCCEEECCSCTBCCCCG--GG---GGCSSCCEEECTTB-CCCCCT-TGGGCSSCCEEEECBC
T ss_pred CCCCCEEEccCCCCccccH--hh---cCCCCCCEEECCCC-CCcChH-HhccCCCCCEEEeeCc
Confidence 4556666666544344443 12 35555666665555 334443 3445555555555443
No 97
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.28 E-value=1.4e-11 Score=118.92 Aligned_cols=100 Identities=16% Similarity=0.283 Sum_probs=48.2
Q ss_pred cCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceec
Q 044585 6 FPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIW 85 (352)
Q Consensus 6 l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~ 85 (352)
+++|+.|++.+| .+..++ .+..+++|++|+|++|. +..++. +..+++|+.|++++|. +..++
T Consensus 42 L~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~Ls~N~--------------l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~ 103 (605)
T 1m9s_A 42 LNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGNK--------------LTDIKP-LTNLKNLGWLFLDENK-IKDLS 103 (605)
T ss_dssp HTTCCCCBCTTC-CCCCCT-TGGGCTTCCEEECTTSC--------------CCCCGG-GGGCTTCCEEECCSSC-CCCCT
T ss_pred CCCCCEEECcCC-CCCCCh-HHccCCCCCEEEeeCCC--------------CCCChh-hccCCCCCEEECcCCC-CCCCh
Confidence 555666666655 444443 24556666666666331 122222 3455556666655554 44322
Q ss_pred cCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccC
Q 044585 86 HGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNC 132 (352)
Q Consensus 86 ~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~ 132 (352)
.. ..+++|++|++++| .+.... .+..+++|+.|++++|
T Consensus 104 -~l----~~l~~L~~L~Ls~N-~l~~l~---~l~~l~~L~~L~Ls~N 141 (605)
T 1m9s_A 104 -SL----KDLKKLKSLSLEHN-GISDIN---GLVHLPQLESLYLGNN 141 (605)
T ss_dssp -TS----TTCTTCCEEECTTS-CCCCCG---GGGGCTTCSEEECCSS
T ss_pred -hh----ccCCCCCEEEecCC-CCCCCc---cccCCCccCEEECCCC
Confidence 11 23555555555555 233321 1335555555555554
No 98
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.28 E-value=2.7e-11 Score=104.15 Aligned_cols=86 Identities=24% Similarity=0.231 Sum_probs=70.1
Q ss_pred cccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccC-CccCCCCCcEEeecCCccccccccccccC
Q 044585 237 LTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVP-ASWHLENLEALKVSKCHRLINLLTLSTSR 315 (352)
Q Consensus 237 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 315 (352)
+.+++|++|++++ +.++.++...+ ..+++|+.|+++++ .++.++. .+..+++|++|+++++ +++.+++ ..+.
T Consensus 104 ~~l~~L~~L~L~~-N~l~~~~~~~~---~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~ 176 (251)
T 3m19_A 104 DHLTQLDKLYLGG-NQLKSLPSGVF---DRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPH-GAFD 176 (251)
T ss_dssp TTCTTCCEEECCS-SCCCCCCTTTT---TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCT-TTTT
T ss_pred cccCCCCEEEcCC-CcCCCcChhHh---ccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCC-cCCccCH-HHHh
Confidence 4578999999999 57888877665 67899999999998 6777776 5788999999999777 5666644 3567
Q ss_pred ccccccEEEEeccc
Q 044585 316 SLIILQSMTIADCK 329 (352)
Q Consensus 316 ~l~~L~~L~i~~c~ 329 (352)
.+++|+.|++++++
T Consensus 177 ~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 177 RLGKLQTITLFGNQ 190 (251)
T ss_dssp TCTTCCEEECCSCC
T ss_pred CCCCCCEEEeeCCc
Confidence 78999999999865
No 99
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.27 E-value=9e-13 Score=119.74 Aligned_cols=265 Identities=9% Similarity=-0.020 Sum_probs=133.6
Q ss_pred eccccccceEe-ccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccC-ccceeEeccCCCcceeccCCCC
Q 044585 13 SMTHCPNMKTF-SRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFR-DIEHLQLSHFPRLREIWHGQAV 90 (352)
Q Consensus 13 ~l~~~~~l~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~l 90 (352)
.+.++ .++.. |......++|++|++++|.+..... ..+...+..++ +|++|++++|. ++...... +
T Consensus 4 ~ls~n-~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~---------~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~-l 71 (362)
T 3goz_A 4 KLTLH-PGSNPVEEFTSIPHGVTSLDLSLNNLYSIST---------VELIQAFANTPASVTSLNLSGNS-LGFKNSDE-L 71 (362)
T ss_dssp ECCCC-TTCCHHHHHHTSCTTCCEEECTTSCGGGSCH---------HHHHHHHHTCCTTCCEEECCSSC-GGGSCHHH-H
T ss_pred ccccc-cchHHHHHHHhCCCCceEEEccCCCCChHHH---------HHHHHHHHhCCCceeEEECcCCC-CCHHHHHH-H
Confidence 44454 33322 2222344558888887543222110 11113334566 78888888775 54421111 1
Q ss_pred CC---CCCCCccEEEEecCCCCcccCCchh---hhcC-CCCcEEEEccCCCcceeeeeccccccccccCCC-CcccCeec
Q 044585 91 PV---SFFNNLRQLAVDDCTNMSSAIPTNL---LRCL-NNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPR-FPRLNRLR 162 (352)
Q Consensus 91 ~~---~~l~~L~~L~l~~c~~l~~~~~~~~---~~~l-~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~-~~~L~~L~ 162 (352)
.. ..+++|++|++++| .+....+... +..+ ++|++|++++|. +..... ......+. . .++|++|+
T Consensus 72 ~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~----~~l~~~l~-~~~~~L~~L~ 144 (362)
T 3goz_A 72 VQILAAIPANVTSLNLSGN-FLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSS----SEFKQAFS-NLPASITSLN 144 (362)
T ss_dssp HHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCH----HHHHHHHT-TSCTTCCEEE
T ss_pred HHHHhccCCCccEEECcCC-cCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHH----HHHHHHHH-hCCCceeEEE
Confidence 00 01267888888877 4554443221 2333 678888887765 322211 11111111 2 24788888
Q ss_pred ccccccccccccc--CCceeecc-CcceEeeccCCCCcccccchhh---hcc-CCCCCCC-CCCccchhhhhcccCCCCC
Q 044585 163 LIDLPKLKRFCNF--TGNIIELS-ELENLTIENCPDMETFISNSVV---HVT-TNNKEPQ-KLTSEENFLLAHQVQPLFD 234 (352)
Q Consensus 163 l~~~~~l~~~~~~--~~~~~~~~-~L~~L~l~~c~~l~~~~~~~~~---~~~-~~L~~L~-~~~~l~~~~~~~~~~~~~~ 234 (352)
++++. +++.... ...+..++ +|++|++++| .+++..+..+. ..+ ++|+.|+ +.+.++...... . ..
T Consensus 145 Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~-l---~~ 218 (362)
T 3goz_A 145 LRGND-LGIKSSDELIQILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAE-L---AY 218 (362)
T ss_dssp CTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHH-H---HH
T ss_pred ccCCc-CCHHHHHHHHHHHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHH-H---HH
Confidence 77653 2211000 00122333 7888888877 45443332222 233 4777777 555555411100 0 00
Q ss_pred cccc-cCCcceeeccccccccccccccccc-ccccCCcceEEEecCC-------CcccccCCccCCCCCcEEeecCCc
Q 044585 235 EKLT-FPQLKELKLSRLHKVQHLWKENDES-NKAFANLKSLEIFECS-------KLQKLVPASWHLENLEALKVSKCH 303 (352)
Q Consensus 235 ~~~~-~~~L~~L~l~~~~~l~~l~~~~~~~-~~~~~~L~~L~l~~c~-------~l~~l~~~~~~~~~L~~L~l~~c~ 303 (352)
.+.. .++|++|+++++ .++..+...+.. ...+++|+.|++++|. .+..++..+..+++|+.|++++++
T Consensus 219 ~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 219 IFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 0122 358999999884 555543321110 1466889999998874 123444556778888899997764
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.26 E-value=3e-11 Score=106.21 Aligned_cols=101 Identities=18% Similarity=0.339 Sum_probs=54.1
Q ss_pred ccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeecccc
Q 044585 66 GFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELN 145 (352)
Q Consensus 66 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 145 (352)
.+++|++|+++++. +..++. . ..+++|++|++++| .+....+ +..+++|+.|++++|. ++.++.+.
T Consensus 44 ~l~~L~~L~l~~~~-i~~~~~-~----~~l~~L~~L~L~~n-~l~~~~~---l~~l~~L~~L~l~~n~-l~~~~~l~--- 109 (291)
T 1h6t_A 44 ELNSIDQIIANNSD-IKSVQG-I----QYLPNVTKLFLNGN-KLTDIKP---LANLKNLGWLFLDENK-VKDLSSLK--- 109 (291)
T ss_dssp HHHTCCEEECTTSC-CCCCTT-G----GGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSSC-CCCGGGGT---
T ss_pred hcCcccEEEccCCC-cccChh-H----hcCCCCCEEEccCC-ccCCCcc---cccCCCCCEEECCCCc-CCCChhhc---
Confidence 45666777766664 444321 1 24666777777766 4444333 4466677777776653 33222111
Q ss_pred ccccccCCCCcccCeeccccccccccccccCCceeeccCcceEeeccC
Q 044585 146 AKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENC 193 (352)
Q Consensus 146 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c 193 (352)
.+++|+.|+++++. ++.+. .+..+++|+.|+++++
T Consensus 110 --------~l~~L~~L~L~~n~-i~~~~----~l~~l~~L~~L~l~~n 144 (291)
T 1h6t_A 110 --------DLKKLKSLSLEHNG-ISDIN----GLVHLPQLESLYLGNN 144 (291)
T ss_dssp --------TCTTCCEEECTTSC-CCCCG----GGGGCTTCCEEECCSS
T ss_pred --------cCCCCCEEECCCCc-CCCCh----hhcCCCCCCEEEccCC
Confidence 56666666666542 33321 2444566666666655
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.22 E-value=5.9e-11 Score=114.60 Aligned_cols=101 Identities=19% Similarity=0.343 Sum_probs=47.6
Q ss_pred ccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeecccc
Q 044585 66 GFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELN 145 (352)
Q Consensus 66 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 145 (352)
.+++|+.|+++++. +..++. . ..+++|+.|+|++| .+...++ +..+++|+.|++++|. +..++.+.
T Consensus 41 ~L~~L~~L~l~~n~-i~~l~~-l----~~l~~L~~L~Ls~N-~l~~~~~---l~~l~~L~~L~Ls~N~-l~~l~~l~--- 106 (605)
T 1m9s_A 41 ELNSIDQIIANNSD-IKSVQG-I----QYLPNVTKLFLNGN-KLTDIKP---LTNLKNLGWLFLDENK-IKDLSSLK--- 106 (605)
T ss_dssp HHTTCCCCBCTTCC-CCCCTT-G----GGCTTCCEEECTTS-CCCCCGG---GGGCTTCCEEECCSSC-CCCCTTST---
T ss_pred cCCCCCEEECcCCC-CCCChH-H----ccCCCCCEEEeeCC-CCCCChh---hccCCCCCEEECcCCC-CCCChhhc---
Confidence 44555555555554 433221 1 24556666666655 3444333 3455666666666543 22221111
Q ss_pred ccccccCCCCcccCeeccccccccccccccCCceeeccCcceEeeccC
Q 044585 146 AKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENC 193 (352)
Q Consensus 146 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c 193 (352)
.+++|+.|+++++. +..+. .+..+++|+.|.|++|
T Consensus 107 --------~l~~L~~L~Ls~N~-l~~l~----~l~~l~~L~~L~Ls~N 141 (605)
T 1m9s_A 107 --------DLKKLKSLSLEHNG-ISDIN----GLVHLPQLESLYLGNN 141 (605)
T ss_dssp --------TCTTCCEEECTTSC-CCCCG----GGGGCTTCSEEECCSS
T ss_pred --------cCCCCCEEEecCCC-CCCCc----cccCCCccCEEECCCC
Confidence 45555555555442 22211 2344555566655555
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.21 E-value=1.7e-10 Score=110.40 Aligned_cols=33 Identities=3% Similarity=0.005 Sum_probs=18.8
Q ss_pred cceeecccccccccccccccccccccCCcceEEEecCC
Q 044585 242 LKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECS 279 (352)
Q Consensus 242 L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~ 279 (352)
|+.|++++ +.++.++.... .+++|+.|++++++
T Consensus 209 L~~L~Ls~-N~l~~lp~~l~----~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 209 EIFFRCRE-NRITHIPENIL----SLDPTCTIILEDNP 241 (571)
T ss_dssp CEEEECCS-SCCCCCCGGGG----GSCTTEEEECCSSS
T ss_pred ceEEecCC-CcceecCHHHh----cCCCCCEEEeeCCc
Confidence 46666666 35555554432 46666666666654
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.19 E-value=4.6e-11 Score=103.42 Aligned_cols=144 Identities=17% Similarity=0.279 Sum_probs=77.6
Q ss_pred ecCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCccee
Q 044585 5 EFPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREI 84 (352)
Q Consensus 5 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~ 84 (352)
.+++|++|++.+| .++.++ .+..+++|++|++++| .+..++. +..+++|++|+++++. ++.+
T Consensus 39 ~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N--------------~i~~~~~-l~~l~~L~~L~L~~N~-l~~l 100 (263)
T 1xeu_A 39 ELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHN--------------QISDLSP-LKDLTKLEELSVNRNR-LKNL 100 (263)
T ss_dssp HHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSS--------------CCCCCGG-GTTCSSCCEEECCSSC-CSCC
T ss_pred hcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCC--------------ccCCChh-hccCCCCCEEECCCCc-cCCc
Confidence 3566666666666 555555 4556666777766633 2223333 4456666667666665 5443
Q ss_pred ccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccc
Q 044585 85 WHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLI 164 (352)
Q Consensus 85 ~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 164 (352)
+... . ++|++|++++| .+.... .+..+++|++|++++|. ++.++.+. .+++|+.|+++
T Consensus 101 ~~~~-----~-~~L~~L~L~~N-~l~~~~---~l~~l~~L~~L~Ls~N~-i~~~~~l~-----------~l~~L~~L~L~ 158 (263)
T 1xeu_A 101 NGIP-----S-ACLSRLFLDNN-ELRDTD---SLIHLKNLEILSIRNNK-LKSIVMLG-----------FLSKLEVLDLH 158 (263)
T ss_dssp TTCC-----C-SSCCEEECCSS-CCSBSG---GGTTCTTCCEEECTTSC-CCBCGGGG-----------GCTTCCEEECT
T ss_pred Cccc-----c-CcccEEEccCC-ccCCCh---hhcCcccccEEECCCCc-CCCChHHc-----------cCCCCCEEECC
Confidence 3222 1 56666666666 444432 24466666666666653 33322111 46666666666
Q ss_pred cccccccccccCCceeeccCcceEeeccC
Q 044585 165 DLPKLKRFCNFTGNIIELSELENLTIENC 193 (352)
Q Consensus 165 ~~~~l~~~~~~~~~~~~~~~L~~L~l~~c 193 (352)
++. +..+ ..+..+++|+.|+++++
T Consensus 159 ~N~-i~~~----~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 159 GNE-ITNT----GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp TSC-CCBC----TTSTTCCCCCEEEEEEE
T ss_pred CCc-Ccch----HHhccCCCCCEEeCCCC
Confidence 543 3322 13445566666666655
No 104
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.19 E-value=4.3e-12 Score=115.22 Aligned_cols=244 Identities=12% Similarity=0.095 Sum_probs=143.8
Q ss_pred CCccEEeccccccceEec-----cCCCCCC-CceEEEecccccCcceeecCccchhhhhhceeeec-cCccceeEeccCC
Q 044585 7 PSLEQVSMTHCPNMKTFS-----RGISSTP-KLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIG-FRDIEHLQLSHFP 79 (352)
Q Consensus 7 ~~L~~L~l~~~~~l~~l~-----~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~L~~L~l~~~~ 79 (352)
++|++|++.+| .++..+ ..+..++ +|++|++++|.+....+. .+...+.. +++|++|++++|.
T Consensus 22 ~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~---------~l~~~l~~~~~~L~~L~Ls~n~ 91 (362)
T 3goz_A 22 HGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSD---------ELVQILAAIPANVTSLNLSGNF 91 (362)
T ss_dssp TTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHH---------HHHHHHHTSCTTCCEEECCSSC
T ss_pred CCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHH---------HHHHHHhccCCCccEEECcCCc
Confidence 45999999999 576655 4456788 999999996533332111 11111112 3899999999998
Q ss_pred CcceeccCCCCCC--CCC-CCccEEEEecCCCCcccCCchh---hhc-CCCCcEEEEccCCCcceeeeeccccccccccC
Q 044585 80 RLREIWHGQAVPV--SFF-NNLRQLAVDDCTNMSSAIPTNL---LRC-LNNLRCLEVRNCDLIEEVLHLEELNAKEEHIG 152 (352)
Q Consensus 80 ~l~~~~~~~~l~~--~~l-~~L~~L~l~~c~~l~~~~~~~~---~~~-l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 152 (352)
++...... +.. ..+ ++|++|++++| .+....+... +.. .++|++|++++|.. .+. +.......+.
T Consensus 92 -l~~~~~~~-l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l-~~~----~~~~l~~~l~ 163 (362)
T 3goz_A 92 -LSYKSSDE-LVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGNDL-GIK----SSDELIQILA 163 (362)
T ss_dssp -GGGSCHHH-HHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSCG-GGS----CHHHHHHHHH
T ss_pred -CChHHHHH-HHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCcC-CHH----HHHHHHHHHh
Confidence 65432211 100 123 79999999999 4666544332 223 46999999999753 221 0011111112
Q ss_pred CCCc-ccCeeccccccccccccccC--Cceeec-cCcceEeeccCCCCccc----ccchhhhccCCCCCCC-CCCccchh
Q 044585 153 PRFP-RLNRLRLIDLPKLKRFCNFT--GNIIEL-SELENLTIENCPDMETF----ISNSVVHVTTNNKEPQ-KLTSEENF 223 (352)
Q Consensus 153 ~~~~-~L~~L~l~~~~~l~~~~~~~--~~~~~~-~~L~~L~l~~c~~l~~~----~~~~~~~~~~~L~~L~-~~~~l~~~ 223 (352)
.++ +|++|+++++. ++...... ..+..+ ++|+.|++++| .+++. ++..+....++|++|+ +.+.++..
T Consensus 164 -~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 164 -AIPANVNSLNLRGNN-LASKNCAELAKFLASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp -TSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred -cCCccccEeeecCCC-CchhhHHHHHHHHHhCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 454 99999999874 33221100 022334 59999999998 45542 1333432346899999 66676654
Q ss_pred hhhcccCCCCCcccccCCcceeeccccccccccccc-------ccccccccCCcceEEEecCC
Q 044585 224 LLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKE-------NDESNKAFANLKSLEIFECS 279 (352)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-------~~~~~~~~~~L~~L~l~~c~ 279 (352)
....-. ..+..+++|+.|++++|. +..+... .+ ..+++|+.|+++++.
T Consensus 241 ~~~~l~----~~~~~l~~L~~L~L~~n~-l~~i~~~~~~~l~~~~---~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 241 SLENLK----LLKDSLKHLQTVYLDYDI-VKNMSKEQCKALGAAF---PNIQKIILVDKNGKE 295 (362)
T ss_dssp CHHHHH----HTTTTTTTCSEEEEEHHH-HTTCCHHHHHHHHTTS---TTCCEEEEECTTSCB
T ss_pred HHHHHH----HHHhcCCCccEEEeccCC-ccccCHHHHHHHHHHh---ccCCceEEEecCCCc
Confidence 321100 002456899999999964 2222211 22 367788888888874
No 105
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.12 E-value=1.3e-10 Score=96.75 Aligned_cols=147 Identities=14% Similarity=0.185 Sum_probs=75.7
Q ss_pred EEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhcee-eeccCccceeEeccCCCcceeccCCC
Q 044585 11 QVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEV-MIGFRDIEHLQLSHFPRLREIWHGQA 89 (352)
Q Consensus 11 ~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~ 89 (352)
.++..++ .++.+|..+ .++|++|+++++. +..++.. +..+++|++|+++++. ++.++...
T Consensus 11 ~v~c~~~-~l~~~p~~~--~~~l~~L~l~~n~--------------l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~- 71 (208)
T 2o6s_A 11 TVECYSQ-GRTSVPTGI--PAQTTYLDLETNS--------------LKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGV- 71 (208)
T ss_dssp EEECCSS-CCSSCCSCC--CTTCSEEECCSSC--------------CCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTT-
T ss_pred EEEecCC-CccCCCCCC--CCCCcEEEcCCCc--------------cCcCChhhhcccccCcEEECCCCc-cCccChhh-
Confidence 3444443 445555443 4567777777432 2222222 2356677777777665 55433322
Q ss_pred CCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeecccccccc
Q 044585 90 VPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKL 169 (352)
Q Consensus 90 l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 169 (352)
+ ..+++|++|++++| .+...++ ..+..+++|++|+++++. +..++. ..+. .+++|+.|+++++. +
T Consensus 72 ~--~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~--------~~~~-~l~~L~~L~l~~N~-l 136 (208)
T 2o6s_A 72 F--NKLTSLTYLNLSTN-QLQSLPN-GVFDKLTQLKELALNTNQ-LQSLPD--------GVFD-KLTQLKDLRLYQNQ-L 136 (208)
T ss_dssp T--TTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CCCCCT--------TTTT-TCTTCCEEECCSSC-C
T ss_pred c--CCCCCcCEEECCCC-cCCccCH-hHhcCccCCCEEEcCCCc-CcccCH--------hHhc-cCCcCCEEECCCCc-c
Confidence 1 24567777777766 4444333 224566777777776653 332211 0011 46677777776642 3
Q ss_pred ccccccCCceeeccCcceEeeccC
Q 044585 170 KRFCNFTGNIIELSELENLTIENC 193 (352)
Q Consensus 170 ~~~~~~~~~~~~~~~L~~L~l~~c 193 (352)
+.+... .+..+++|+.|+++++
T Consensus 137 ~~~~~~--~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 137 KSVPDG--VFDRLTSLQYIWLHDN 158 (208)
T ss_dssp SCCCTT--TTTTCTTCCEEECCSC
T ss_pred ceeCHH--HhccCCCccEEEecCC
Confidence 333221 2445667777777665
No 106
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.10 E-value=5.5e-11 Score=95.57 Aligned_cols=135 Identities=16% Similarity=0.226 Sum_probs=81.6
Q ss_pred CCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCC
Q 044585 30 TPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNM 109 (352)
Q Consensus 30 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l 109 (352)
.++|++|++++|.+. ...+|..+..+++|++|++++|. ++.+ .. + ..+++|++|++++| .+
T Consensus 23 ~~~L~~L~l~~n~l~------------~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~--~--~~l~~L~~L~Ls~N-~l 83 (168)
T 2ell_A 23 PAAVRELVLDNCKSN------------DGKIEGLTAEFVNLEFLSLINVG-LISV-SN--L--PKLPKLKKLELSEN-RI 83 (168)
T ss_dssp TTSCSEEECCSCBCB------------TTBCSSCCGGGGGCCEEEEESSC-CCCC-SS--C--CCCSSCCEEEEESC-CC
T ss_pred cccCCEEECCCCCCC------------hhhHHHHHHhCCCCCEEeCcCCC-CCCh-hh--h--ccCCCCCEEECcCC-cC
Confidence 567777777743111 02455555677788888888776 6554 22 2 35778888888887 45
Q ss_pred cccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccccccccccccC-CceeeccCcceE
Q 044585 110 SSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFT-GNIIELSELENL 188 (352)
Q Consensus 110 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~~~~L~~L 188 (352)
....+ ..+..+++|+.|++++|. +..++... .+. .+++|+.|++++++ +..++... ..+..+++|+.|
T Consensus 84 ~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~-------~l~-~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L 152 (168)
T 2ell_A 84 FGGLD-MLAEKLPNLTHLNLSGNK-LKDISTLE-------PLK-KLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYL 152 (168)
T ss_dssp CSCCC-HHHHHCTTCCEEECBSSS-CCSSGGGG-------GGS-SCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEE
T ss_pred chHHH-HHHhhCCCCCEEeccCCc-cCcchhHH-------HHh-cCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEe
Confidence 55333 335568888888888864 33332111 111 67788888887764 33322200 035667888888
Q ss_pred eeccCC
Q 044585 189 TIENCP 194 (352)
Q Consensus 189 ~l~~c~ 194 (352)
++.+|.
T Consensus 153 ~l~~n~ 158 (168)
T 2ell_A 153 DGYDRE 158 (168)
T ss_dssp TTEETT
T ss_pred cCCCCC
Confidence 888874
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.07 E-value=1.5e-09 Score=103.76 Aligned_cols=177 Identities=13% Similarity=0.109 Sum_probs=117.9
Q ss_pred ccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccc
Q 044585 69 DIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKE 148 (352)
Q Consensus 69 ~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 148 (352)
+|+.|+++++. ++.++.. .+++|++|++++| .+... | . .+++|+.|++++|. ++.++.+
T Consensus 60 ~L~~L~Ls~n~-L~~lp~~------l~~~L~~L~Ls~N-~l~~i-p-~---~l~~L~~L~Ls~N~-l~~ip~l------- 118 (571)
T 3cvr_A 60 QFSELQLNRLN-LSSLPDN------LPPQITVLEITQN-ALISL-P-E---LPASLEYLDACDNR-LSTLPEL------- 118 (571)
T ss_dssp TCSEEECCSSC-CSCCCSC------CCTTCSEEECCSS-CCSCC-C-C---CCTTCCEEECCSSC-CSCCCCC-------
T ss_pred CccEEEeCCCC-CCccCHh------HcCCCCEEECcCC-CCccc-c-c---ccCCCCEEEccCCC-CCCcchh-------
Confidence 78888888776 6664433 3577888888887 55543 3 2 46788888888864 4334321
Q ss_pred cccCCCCcccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhc
Q 044585 149 EHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAH 227 (352)
Q Consensus 149 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~ 227 (352)
..+|+.|+++++. ++.++. .+++|+.|+++++ .++.+ |. .+++|+.|+ +.+.++.++.
T Consensus 119 ------~~~L~~L~Ls~N~-l~~lp~------~l~~L~~L~Ls~N-~l~~l-p~----~l~~L~~L~Ls~N~L~~lp~-- 177 (571)
T 3cvr_A 119 ------PASLKHLDVDNNQ-LTMLPE------LPALLEYINADNN-QLTML-PE----LPTSLEVLSVRNNQLTFLPE-- 177 (571)
T ss_dssp ------CTTCCEEECCSSC-CSCCCC------CCTTCCEEECCSS-CCSCC-CC----CCTTCCEEECCSSCCSCCCC--
T ss_pred ------hcCCCEEECCCCc-CCCCCC------cCccccEEeCCCC-ccCcC-CC----cCCCcCEEECCCCCCCCcch--
Confidence 1178888887753 444322 4678888888877 45554 43 457777777 6566654322
Q ss_pred ccCCCCCcccccCCcceeecccccccccccccccccccccCCc-------ceEEEecCCCcccccCCccCCCCCcEEeec
Q 044585 228 QVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANL-------KSLEIFECSKLQKLVPASWHLENLEALKVS 300 (352)
Q Consensus 228 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L-------~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~ 300 (352)
+ . ++|+.|++++ +.++.++. + .. +| +.|++++| .++.+|..+..+++|++|+++
T Consensus 178 -l-------~--~~L~~L~Ls~-N~L~~lp~--~---~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~ 238 (571)
T 3cvr_A 178 -L-------P--ESLEALDVST-NLLESLPA--V---PV--RNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILE 238 (571)
T ss_dssp -C-------C--TTCCEEECCS-SCCSSCCC--C---C----------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECC
T ss_pred -h-------h--CCCCEEECcC-CCCCchhh--H---HH--hhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEee
Confidence 1 2 6899999998 47777765 3 11 56 99999987 677888877789999999998
Q ss_pred CCcccc
Q 044585 301 KCHRLI 306 (352)
Q Consensus 301 ~c~~l~ 306 (352)
+++--.
T Consensus 239 ~N~l~~ 244 (571)
T 3cvr_A 239 DNPLSS 244 (571)
T ss_dssp SSSCCH
T ss_pred CCcCCC
Confidence 775433
No 108
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.07 E-value=3.5e-10 Score=94.14 Aligned_cols=13 Identities=23% Similarity=0.552 Sum_probs=6.3
Q ss_pred eccCcceEeeccC
Q 044585 181 ELSELENLTIENC 193 (352)
Q Consensus 181 ~~~~L~~L~l~~c 193 (352)
.+++|+.|+++++
T Consensus 98 ~l~~L~~L~L~~N 110 (208)
T 2o6s_A 98 KLTQLKELALNTN 110 (208)
T ss_dssp TCTTCCEEECCSS
T ss_pred CccCCCEEEcCCC
Confidence 3445555555444
No 109
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.06 E-value=1.3e-09 Score=97.41 Aligned_cols=39 Identities=23% Similarity=0.337 Sum_probs=24.3
Q ss_pred ecCCccEEeccccccceEeccCCC-CCCCceEEEecccccC
Q 044585 5 EFPSLEQVSMTHCPNMKTFSRGIS-STPKLYVVQVTEREEG 44 (352)
Q Consensus 5 ~l~~L~~L~l~~~~~l~~l~~~~~-~~~~L~~L~l~~~~~~ 44 (352)
.+++++.|.+.+.-...++. .+. .+++|++|||+++.+.
T Consensus 23 ~~~~l~~L~l~g~i~~~~~~-~l~~~l~~L~~LdLs~n~i~ 62 (329)
T 3sb4_A 23 EANSITHLTLTGKLNAEDFR-HLRDEFPSLKVLDISNAEIK 62 (329)
T ss_dssp HHHHCSEEEEEEEECHHHHH-HHHHSCTTCCEEEEEEEEEC
T ss_pred hhCceeEEEEeccccHHHHH-HHHHhhccCeEEecCcceeE
Confidence 35678888888752211111 112 2889999999977665
No 110
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.05 E-value=6.9e-11 Score=92.98 Aligned_cols=105 Identities=13% Similarity=0.163 Sum_probs=50.1
Q ss_pred cCCccEEeccccccce--EeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcce
Q 044585 6 FPSLEQVSMTHCPNMK--TFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLRE 83 (352)
Q Consensus 6 l~~L~~L~l~~~~~l~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~ 83 (352)
.++|++|++.+| .++ .+|..+..+++|++|++++|.+.. + ..+..+++|++|+++++. ++.
T Consensus 16 ~~~l~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~--------------~-~~~~~l~~L~~L~Ls~n~-i~~ 78 (149)
T 2je0_A 16 PSDVKELVLDNS-RSNEGKLEGLTDEFEELEFLSTINVGLTS--------------I-ANLPKLNKLKKLELSDNR-VSG 78 (149)
T ss_dssp GGGCSEEECTTC-BCBTTBCCSCCTTCTTCCEEECTTSCCCC--------------C-TTCCCCTTCCEEECCSSC-CCS
T ss_pred CccCeEEEccCC-cCChhHHHHHHhhcCCCcEEECcCCCCCC--------------c-hhhhcCCCCCEEECCCCc-ccc
Confidence 456677777766 444 555555666666666666432221 1 223345555555555554 332
Q ss_pred -eccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccC
Q 044585 84 -IWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNC 132 (352)
Q Consensus 84 -~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~ 132 (352)
++... +.+++|++|++++| .+...+....+..+++|++|++++|
T Consensus 79 ~~~~~~----~~l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N 123 (149)
T 2je0_A 79 GLEVLA----EKCPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNC 123 (149)
T ss_dssp CTHHHH----HHCTTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTC
T ss_pred hHHHHh----hhCCCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCC
Confidence 11111 12455555555554 2333211122344555555555554
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.05 E-value=7.1e-10 Score=93.86 Aligned_cols=130 Identities=16% Similarity=0.060 Sum_probs=65.1
Q ss_pred CcccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCC
Q 044585 155 FPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLF 233 (352)
Q Consensus 155 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~ 233 (352)
.++|+.|+++++. +..+... .+..+++|+.|+++++ .++.+ +...+..+++|+.|+ +.+.++.+....
T Consensus 39 ~~~L~~L~Ls~n~-i~~~~~~--~~~~l~~L~~L~L~~N-~l~~i-~~~~~~~l~~L~~L~Ls~N~l~~l~~~~------ 107 (229)
T 3e6j_A 39 PTNAQILYLHDNQ-ITKLEPG--VFDSLINLKELYLGSN-QLGAL-PVGVFDSLTQLTVLDLGTNQLTVLPSAV------ 107 (229)
T ss_dssp CTTCSEEECCSSC-CCCCCTT--TTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTT------
T ss_pred CCCCCEEEcCCCc-cCccCHH--HhhCccCCcEEECCCC-CCCCc-ChhhcccCCCcCEEECCCCcCCccChhH------
Confidence 4567777776543 3332111 3445667777777665 34443 333333555555555 444444333221
Q ss_pred CcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccC-CccCCCCCcEEeecCCc
Q 044585 234 DEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVP-ASWHLENLEALKVSKCH 303 (352)
Q Consensus 234 ~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~ 303 (352)
+..+++|++|++++ +.++.++... ..+++|+.|+++++ .++.++. .+..+++|++|++.+++
T Consensus 108 --~~~l~~L~~L~Ls~-N~l~~lp~~~----~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 108 --FDRLVHLKELFMCC-NKLTELPRGI----ERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp --TTTCTTCCEEECCS-SCCCSCCTTG----GGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred --hCcchhhCeEeccC-CcccccCccc----ccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCC
Confidence 23455666666655 3445444332 35556666666554 3444442 24455566666665543
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.04 E-value=5.6e-11 Score=102.88 Aligned_cols=21 Identities=10% Similarity=-0.015 Sum_probs=14.0
Q ss_pred ccccCCcceeeccccccccccc
Q 044585 236 KLTFPQLKELKLSRLHKVQHLW 257 (352)
Q Consensus 236 ~~~~~~L~~L~l~~~~~l~~l~ 257 (352)
+..+++|+.|+++++ .+...+
T Consensus 168 l~~l~~L~~L~l~~N-~~~~~~ 188 (263)
T 1xeu_A 168 LTRLKKVNWIDLTGQ-KCVNEP 188 (263)
T ss_dssp STTCCCCCEEEEEEE-EEECCC
T ss_pred hccCCCCCEEeCCCC-cccCCc
Confidence 355778888888884 444444
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.04 E-value=8.7e-10 Score=92.70 Aligned_cols=149 Identities=14% Similarity=0.209 Sum_probs=93.4
Q ss_pred cEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhce-eeeccCccceeEeccCCCcceeccCC
Q 044585 10 EQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYE-VMIGFRDIEHLQLSHFPRLREIWHGQ 88 (352)
Q Consensus 10 ~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~ 88 (352)
+.++..++ +++.+|..+ .++|++|+++++ .+..++. .+..+++|++|+++++. ++.+....
T Consensus 14 ~~v~c~~~-~l~~iP~~l--~~~l~~L~l~~n--------------~i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~ 75 (220)
T 2v9t_B 14 NIVDCRGK-GLTEIPTNL--PETITEIRLEQN--------------TIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDA 75 (220)
T ss_dssp TEEECTTS-CCSSCCSSC--CTTCCEEECCSS--------------CCCEECTTSSTTCTTCCEEECCSSC-CCEECTTT
T ss_pred CEEEcCCC-CcCcCCCcc--CcCCCEEECCCC--------------cCCCcCHhHhhCCCCCCEEECCCCc-CCCcCHHH
Confidence 45666665 677777655 367888888843 3333332 34567888888888876 66553322
Q ss_pred CCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccccc
Q 044585 89 AVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPK 168 (352)
Q Consensus 89 ~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 168 (352)
+ ..+++|++|+++++ .+...+ ...+..+++|+.|++++|. +..++. ..+. .+++|+.|+++++.
T Consensus 76 -~--~~l~~L~~L~Ls~N-~l~~l~-~~~f~~l~~L~~L~L~~N~-l~~~~~--------~~~~-~l~~L~~L~L~~N~- 139 (220)
T 2v9t_B 76 -F--QGLRSLNSLVLYGN-KITELP-KSLFEGLFSLQLLLLNANK-INCLRV--------DAFQ-DLHNLNLLSLYDNK- 139 (220)
T ss_dssp -T--TTCSSCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCT--------TTTT-TCTTCCEEECCSSC-
T ss_pred -h--hCCcCCCEEECCCC-cCCccC-HhHccCCCCCCEEECCCCC-CCEeCH--------HHcC-CCCCCCEEECCCCc-
Confidence 2 35788888888887 455543 3445678888888888864 333211 1112 57788888887754
Q ss_pred cccccccCCceeeccCcceEeeccCC
Q 044585 169 LKRFCNFTGNIIELSELENLTIENCP 194 (352)
Q Consensus 169 l~~~~~~~~~~~~~~~L~~L~l~~c~ 194 (352)
++.+... .+..+++|+.|++++++
T Consensus 140 l~~~~~~--~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 140 LQTIAKG--TFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CSCCCTT--TTTTCTTCCEEECCSSC
T ss_pred CCEECHH--HHhCCCCCCEEEeCCCC
Confidence 4443321 35567888888888764
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.01 E-value=1.9e-09 Score=90.61 Aligned_cols=149 Identities=12% Similarity=0.179 Sum_probs=95.0
Q ss_pred cEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhc--eeeeccCccceeEeccCCCcceeccC
Q 044585 10 EQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCY--EVMIGFRDIEHLQLSHFPRLREIWHG 87 (352)
Q Consensus 10 ~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~L~~L~l~~~~~l~~~~~~ 87 (352)
+++++.++ .++.+|..+ .+.+++|+++++ .+..++ ..+..+++|++|+++++. ++.++..
T Consensus 14 ~~l~~s~n-~l~~iP~~~--~~~~~~L~L~~N--------------~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~ 75 (220)
T 2v70_A 14 TTVDCSNQ-KLNKIPEHI--PQYTAELRLNNN--------------EFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEG 75 (220)
T ss_dssp TEEECCSS-CCSSCCSCC--CTTCSEEECCSS--------------CCCEECCCCCGGGCTTCCEEECCSSC-CCEECTT
T ss_pred CEeEeCCC-CcccCccCC--CCCCCEEEcCCC--------------cCCccCchhhhccCCCCCEEECCCCc-CCEECHH
Confidence 57777776 677777655 456788888843 233332 224578889999998877 7665543
Q ss_pred CCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeecccccc
Q 044585 88 QAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLP 167 (352)
Q Consensus 88 ~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 167 (352)
. + ..+++|++|+++++ .+...++ ..+..+++|++|++++|. +..++. ..+. .+++|+.|+++++.
T Consensus 76 ~-~--~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~--------~~~~-~l~~L~~L~L~~N~ 140 (220)
T 2v70_A 76 A-F--EGASGVNEILLTSN-RLENVQH-KMFKGLESLKTLMLRSNR-ITCVGN--------DSFI-GLSSVRLLSLYDNQ 140 (220)
T ss_dssp T-T--TTCTTCCEEECCSS-CCCCCCG-GGGTTCSSCCEEECTTSC-CCCBCT--------TSST-TCTTCSEEECTTSC
T ss_pred H-h--CCCCCCCEEECCCC-ccCccCH-hHhcCCcCCCEEECCCCc-CCeECH--------hHcC-CCccCCEEECCCCc
Confidence 3 2 35788899999887 5655444 346778888999888865 333211 0111 56778888887653
Q ss_pred ccccccccCCceeeccCcceEeeccCC
Q 044585 168 KLKRFCNFTGNIIELSELENLTIENCP 194 (352)
Q Consensus 168 ~l~~~~~~~~~~~~~~~L~~L~l~~c~ 194 (352)
++.+... .+..+++|+.|++++++
T Consensus 141 -l~~~~~~--~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 141 -ITTVAPG--AFDTLHSLSTLNLLANP 164 (220)
T ss_dssp -CCCBCTT--TTTTCTTCCEEECCSCC
T ss_pred -CCEECHH--HhcCCCCCCEEEecCcC
Confidence 4433221 34556778888777763
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.00 E-value=1.2e-12 Score=125.70 Aligned_cols=120 Identities=16% Similarity=0.161 Sum_probs=68.9
Q ss_pred ccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCc
Q 044585 157 RLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDE 235 (352)
Q Consensus 157 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~ 235 (352)
.|+.|+++++ .++.++ .+..+++|+.|+++++ .++.+ |..+. .+++|+.|+ +.+.++.++ .
T Consensus 442 ~L~~L~Ls~n-~l~~lp----~~~~l~~L~~L~Ls~N-~l~~l-p~~~~-~l~~L~~L~Ls~N~l~~lp-~--------- 503 (567)
T 1dce_A 442 DVRVLHLAHK-DLTVLC----HLEQLLLVTHLDLSHN-RLRAL-PPALA-ALRCLEVLQASDNALENVD-G--------- 503 (567)
T ss_dssp TCSEEECTTS-CCSSCC----CGGGGTTCCEEECCSS-CCCCC-CGGGG-GCTTCCEEECCSSCCCCCG-G---------
T ss_pred CceEEEecCC-CCCCCc----CccccccCcEeecCcc-ccccc-chhhh-cCCCCCEEECCCCCCCCCc-c---------
Confidence 3555555543 233322 1344556666666655 34433 44433 566666666 555555432 1
Q ss_pred ccccCCcceeeccccccccccc-ccccccccccCCcceEEEecCCCcccccCCc----cCCCCCcEEee
Q 044585 236 KLTFPQLKELKLSRLHKVQHLW-KENDESNKAFANLKSLEIFECSKLQKLVPAS----WHLENLEALKV 299 (352)
Q Consensus 236 ~~~~~~L~~L~l~~~~~l~~l~-~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~----~~~~~L~~L~l 299 (352)
++.+++|+.|++++ +.++.+. ...+ ..+++|+.|+++++ .++.+|+.. ..+++|+.|++
T Consensus 504 l~~l~~L~~L~Ls~-N~l~~~~~p~~l---~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 504 VANLPRLQELLLCN-NRLQQSAAIQPL---VSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GTTCSSCCEEECCS-SCCCSSSTTGGG---GGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred cCCCCCCcEEECCC-CCCCCCCCcHHH---hcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccCC
Confidence 35677888888888 4666663 3334 57888888888887 455555432 23778887753
No 116
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.97 E-value=2.4e-09 Score=90.55 Aligned_cols=148 Identities=18% Similarity=0.164 Sum_probs=84.4
Q ss_pred cEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhh-ceeeeccCccceeEeccCCCcceeccCC
Q 044585 10 EQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKC-YEVMIGFRDIEHLQLSHFPRLREIWHGQ 88 (352)
Q Consensus 10 ~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 88 (352)
+.++..++ +++.+|..+ .++|++|+++++. +..+ +..+..+++|++|+++++. ++.++...
T Consensus 22 ~~v~c~~~-~l~~ip~~~--~~~L~~L~Ls~n~--------------i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~ 83 (229)
T 3e6j_A 22 TTVDCRSK-RHASVPAGI--PTNAQILYLHDNQ--------------ITKLEPGVFDSLINLKELYLGSNQ-LGALPVGV 83 (229)
T ss_dssp TEEECTTS-CCSSCCSCC--CTTCSEEECCSSC--------------CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT
T ss_pred CEeEccCC-CcCccCCCC--CCCCCEEEcCCCc--------------cCccCHHHhhCccCCcEEECCCCC-CCCcChhh
Confidence 44555554 566666655 3777888877432 2222 3334567777777777776 55544332
Q ss_pred CCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccccc
Q 044585 89 AVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPK 168 (352)
Q Consensus 89 ~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 168 (352)
+ ..+++|++|++++| .+...++ ..+..+++|++|++++|. +..++... . .+++|+.|++++. .
T Consensus 84 -~--~~l~~L~~L~Ls~N-~l~~l~~-~~~~~l~~L~~L~Ls~N~-l~~lp~~~---------~-~l~~L~~L~L~~N-~ 146 (229)
T 3e6j_A 84 -F--DSLTQLTVLDLGTN-QLTVLPS-AVFDRLVHLKELFMCCNK-LTELPRGI---------E-RLTHLTHLALDQN-Q 146 (229)
T ss_dssp -T--TTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CCSCCTTG---------G-GCTTCSEEECCSS-C
T ss_pred -c--ccCCCcCEEECCCC-cCCccCh-hHhCcchhhCeEeccCCc-ccccCccc---------c-cCCCCCEEECCCC-c
Confidence 2 24677777777776 4555433 335567777777777754 33332111 1 5667777777664 3
Q ss_pred cccccccCCceeeccCcceEeeccCC
Q 044585 169 LKRFCNFTGNIIELSELENLTIENCP 194 (352)
Q Consensus 169 l~~~~~~~~~~~~~~~L~~L~l~~c~ 194 (352)
++.+... .+..+++|+.|.+.+++
T Consensus 147 l~~~~~~--~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 147 LKSIPHG--AFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CCCCCTT--TTTTCTTCCEEECTTSC
T ss_pred CCccCHH--HHhCCCCCCEEEeeCCC
Confidence 4433221 34456677777776653
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.94 E-value=2.1e-09 Score=86.17 Aligned_cols=32 Identities=6% Similarity=0.208 Sum_probs=14.8
Q ss_pred CCccEEeccccccce--EeccCCCCCCCceEEEec
Q 044585 7 PSLEQVSMTHCPNMK--TFSRGISSTPKLYVVQVT 39 (352)
Q Consensus 7 ~~L~~L~l~~~~~l~--~l~~~~~~~~~L~~L~l~ 39 (352)
++|++|++.+| .++ .+|..+..+++|++|+++
T Consensus 24 ~~L~~L~l~~n-~l~~~~i~~~~~~l~~L~~L~l~ 57 (168)
T 2ell_A 24 AAVRELVLDNC-KSNDGKIEGLTAEFVNLEFLSLI 57 (168)
T ss_dssp TSCSEEECCSC-BCBTTBCSSCCGGGGGCCEEEEE
T ss_pred ccCCEEECCCC-CCChhhHHHHHHhCCCCCEEeCc
Confidence 44445555444 333 444444444455555554
No 118
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.94 E-value=3e-09 Score=96.40 Aligned_cols=165 Identities=16% Similarity=0.153 Sum_probs=96.7
Q ss_pred cEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhcee-ee-ccCccceeEeccCCCcceeccC
Q 044585 10 EQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEV-MI-GFRDIEHLQLSHFPRLREIWHG 87 (352)
Q Consensus 10 ~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~-~~~~L~~L~l~~~~~l~~~~~~ 87 (352)
+.+++.++ +++.+|..+ .+.+++|+++++ .+..++.. +. .+++|++|+++++. ++.++..
T Consensus 21 ~~l~c~~~-~l~~iP~~~--~~~l~~L~Ls~N--------------~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~ 82 (361)
T 2xot_A 21 NILSCSKQ-QLPNVPQSL--PSYTALLDLSHN--------------NLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSE 82 (361)
T ss_dssp TEEECCSS-CCSSCCSSC--CTTCSEEECCSS--------------CCCEECTTSSSSCCTTCCEEECCSSC-CCEECTT
T ss_pred CEEEeCCC-CcCccCccC--CCCCCEEECCCC--------------CCCccChhhhhhcccccCEEECCCCc-CCccChh
Confidence 46666665 677777655 456788888843 33333332 22 67888888888776 6665543
Q ss_pred CCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeecccccc
Q 044585 88 QAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLP 167 (352)
Q Consensus 88 ~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 167 (352)
. + ..+++|++|+++++ .+....+ ..+..+++|+.|++++|. +..+.. ..+. .+++|+.|+++++.
T Consensus 83 ~-~--~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N~-i~~~~~--------~~~~-~l~~L~~L~L~~N~ 147 (361)
T 2xot_A 83 A-F--VPVPNLRYLDLSSN-HLHTLDE-FLFSDLQALEVLLLYNNH-IVVVDR--------NAFE-DMAQLQKLYLSQNQ 147 (361)
T ss_dssp T-T--TTCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSSC-CCEECT--------TTTT-TCTTCCEEECCSSC
T ss_pred h-c--cCCCCCCEEECCCC-cCCcCCH-HHhCCCcCCCEEECCCCc-ccEECH--------HHhC-CcccCCEEECCCCc
Confidence 3 2 35778888888887 4655443 335677888888888765 333311 1111 57788888887653
Q ss_pred ccccccccC-CceeeccCcceEeeccCCCCcccccchhhhccCC
Q 044585 168 KLKRFCNFT-GNIIELSELENLTIENCPDMETFISNSVVHVTTN 210 (352)
Q Consensus 168 ~l~~~~~~~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 210 (352)
++.++... .....+++|+.|+++++ .++.+ +...+..+++
T Consensus 148 -l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l-~~~~~~~l~~ 188 (361)
T 2xot_A 148 -ISRFPVELIKDGNKLPKLMLLDLSSN-KLKKL-PLTDLQKLPA 188 (361)
T ss_dssp -CCSCCGGGTC----CTTCCEEECCSS-CCCCC-CHHHHHHSCH
T ss_pred -CCeeCHHHhcCcccCCcCCEEECCCC-CCCcc-CHHHhhhccH
Confidence 44433211 01145778888888776 55554 3333334444
No 119
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.94 E-value=3.9e-09 Score=88.71 Aligned_cols=131 Identities=13% Similarity=0.130 Sum_probs=84.3
Q ss_pred CcccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCC
Q 044585 155 FPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLF 233 (352)
Q Consensus 155 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~ 233 (352)
.++|+.|++.+.. ++.+... .+..+++|+.|+++++ .++.+.+..+ .++++|+.|+ +.+.++.++...
T Consensus 31 ~~~l~~L~l~~n~-i~~i~~~--~~~~l~~L~~L~Ls~N-~i~~~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~------ 99 (220)
T 2v9t_B 31 PETITEIRLEQNT-IKVIPPG--AFSPYKKLRRIDLSNN-QISELAPDAF-QGLRSLNSLVLYGNKITELPKSL------ 99 (220)
T ss_dssp CTTCCEEECCSSC-CCEECTT--SSTTCTTCCEEECCSS-CCCEECTTTT-TTCSSCCEEECCSSCCCCCCTTT------
T ss_pred CcCCCEEECCCCc-CCCcCHh--HhhCCCCCCEEECCCC-cCCCcCHHHh-hCCcCCCEEECCCCcCCccCHhH------
Confidence 3578888887653 4443321 3556788888888877 5655534444 3677777777 666666544332
Q ss_pred CcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccC-CccCCCCCcEEeecCCc
Q 044585 234 DEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVP-ASWHLENLEALKVSKCH 303 (352)
Q Consensus 234 ~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~ 303 (352)
+..+++|++|++++ +.++.++...+ ..+++|+.|+++++ .++.++. .+..+++|++|++++++
T Consensus 100 --f~~l~~L~~L~L~~-N~l~~~~~~~~---~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 100 --FEGLFSLQLLLLNA-NKINCLRVDAF---QDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp --TTTCTTCCEEECCS-SCCCCCCTTTT---TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred --ccCCCCCCEEECCC-CCCCEeCHHHc---CCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCC
Confidence 34567788888877 46666655555 56777888888776 4555554 35667778888876664
No 120
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.93 E-value=4.6e-09 Score=88.25 Aligned_cols=133 Identities=14% Similarity=0.122 Sum_probs=88.4
Q ss_pred CcccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCC
Q 044585 155 FPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLF 233 (352)
Q Consensus 155 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~ 233 (352)
.+.++.|++++.. ++.+.... .+..+++|+.|+++++ .++.+ +...+..+++|+.|+ +.+.++.+....
T Consensus 31 ~~~~~~L~L~~N~-l~~~~~~~-~~~~l~~L~~L~L~~N-~i~~i-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~------ 100 (220)
T 2v70_A 31 PQYTAELRLNNNE-FTVLEATG-IFKKLPQLRKINFSNN-KITDI-EEGAFEGASGVNEILLTSNRLENVQHKM------ 100 (220)
T ss_dssp CTTCSEEECCSSC-CCEECCCC-CGGGCTTCCEEECCSS-CCCEE-CTTTTTTCTTCCEEECCSSCCCCCCGGG------
T ss_pred CCCCCEEEcCCCc-CCccCchh-hhccCCCCCEEECCCC-cCCEE-CHHHhCCCCCCCEEECCCCccCccCHhH------
Confidence 4467888887753 44442211 3567889999999887 56665 333334777888887 666666554432
Q ss_pred CcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccc-cCCccCCCCCcEEeecCCcc
Q 044585 234 DEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKL-VPASWHLENLEALKVSKCHR 304 (352)
Q Consensus 234 ~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~l~~c~~ 304 (352)
+..+++|++|++++ +.++.++...+ ..+++|+.|+++++ .++.+ |..+..+++|++|++++++-
T Consensus 101 --~~~l~~L~~L~Ls~-N~l~~~~~~~~---~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 101 --FKGLESLKTLMLRS-NRITCVGNDSF---IGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp --GTTCSSCCEEECTT-SCCCCBCTTSS---TTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred --hcCCcCCCEEECCC-CcCCeECHhHc---CCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcCC
Confidence 35577888888888 46666655555 57788888888876 45555 55667788888888877653
No 121
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.92 E-value=1e-09 Score=88.76 Aligned_cols=107 Identities=17% Similarity=0.303 Sum_probs=48.9
Q ss_pred ccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccc
Q 044585 69 DIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKE 148 (352)
Q Consensus 69 ~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 148 (352)
+|+.|+++++. ++.+ .. + ..+++|++|++++| .+...++ ..+..+++|+.|++++|. +..++...
T Consensus 43 ~L~~L~Ls~N~-l~~~-~~--l--~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N~-i~~~~~~~------ 107 (176)
T 1a9n_A 43 QFDAIDFSDNE-IRKL-DG--F--PLLRRLKTLLVNNN-RICRIGE-GLDQALPDLTELILTNNS-LVELGDLD------ 107 (176)
T ss_dssp CCSEEECCSSC-CCEE-CC--C--CCCSSCCEEECCSS-CCCEECS-CHHHHCTTCCEEECCSCC-CCCGGGGG------
T ss_pred CCCEEECCCCC-CCcc-cc--c--ccCCCCCEEECCCC-cccccCc-chhhcCCCCCEEECCCCc-CCcchhhH------
Confidence 55555555554 4443 11 1 23556666666655 3444322 223455666666666543 22222111
Q ss_pred cccCCCCcccCeeccccccccccccccC-CceeeccCcceEeeccC
Q 044585 149 EHIGPRFPRLNRLRLIDLPKLKRFCNFT-GNIIELSELENLTIENC 193 (352)
Q Consensus 149 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~~~~L~~L~l~~c 193 (352)
.+. .+++|+.|++++++ +..++... ..+..+|+|+.|+++++
T Consensus 108 -~l~-~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 108 -PLA-SLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp -GGG-GCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred -hhh-cCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcC
Confidence 011 45566666665543 22221100 01445666777666665
No 122
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.91 E-value=4.6e-09 Score=93.84 Aligned_cols=79 Identities=11% Similarity=0.061 Sum_probs=46.9
Q ss_pred cCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccC-CccCCCCCc-EEeecCCccccccccccccCc
Q 044585 239 FPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVP-ASWHLENLE-ALKVSKCHRLINLLTLSTSRS 316 (352)
Q Consensus 239 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~-~L~l~~c~~l~~~~~~~~~~~ 316 (352)
+++|+.+++.+ +.++.++..++ ..+++|+.+.+.+. ++.++. .+..+++|+ .+++.+ .++.+.. ..+..
T Consensus 225 ~~~L~~l~L~~-n~i~~I~~~aF---~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~-~aF~~ 295 (329)
T 3sb4_A 225 MPNLVSLDISK-TNATTIPDFTF---AQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEF-GAFMG 295 (329)
T ss_dssp CTTCCEEECTT-BCCCEECTTTT---TTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECT-TTTTT
T ss_pred cCCCeEEECCC-CCcceecHhhh---hCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEch-hhhhC
Confidence 45666666665 34666666666 56666666666653 555543 355666666 666654 4555532 35566
Q ss_pred cccccEEEEe
Q 044585 317 LIILQSMTIA 326 (352)
Q Consensus 317 l~~L~~L~i~ 326 (352)
|++|+.+++.
T Consensus 296 c~~L~~l~l~ 305 (329)
T 3sb4_A 296 CDNLRYVLAT 305 (329)
T ss_dssp CTTEEEEEEC
T ss_pred CccCCEEEeC
Confidence 6666666653
No 123
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.89 E-value=4e-09 Score=95.57 Aligned_cols=149 Identities=13% Similarity=0.144 Sum_probs=93.7
Q ss_pred chhhhhhceeeeccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCC
Q 044585 54 NSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCD 133 (352)
Q Consensus 54 ~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~ 133 (352)
+..+..+|..+. +.++.|+++++. ++.++... +. ..+++|++|+++++ .+....+. .+..+++|++|++++|.
T Consensus 27 ~~~l~~iP~~~~--~~l~~L~Ls~N~-l~~l~~~~-~~-~~l~~L~~L~L~~N-~i~~i~~~-~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 27 KQQLPNVPQSLP--SYTALLDLSHNN-LSRLRAEW-TP-TRLTNLHSLLLSHN-HLNFISSE-AFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp SSCCSSCCSSCC--TTCSEEECCSSC-CCEECTTS-SS-SCCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSSC
T ss_pred CCCcCccCccCC--CCCCEEECCCCC-CCccChhh-hh-hcccccCEEECCCC-cCCccChh-hccCCCCCCEEECCCCc
Confidence 345566666443 568899999886 77766554 32 15788999999988 56665543 36788899999999865
Q ss_pred CcceeeeeccccccccccCCCCcccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhh---hccCC
Q 044585 134 LIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVV---HVTTN 210 (352)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~---~~~~~ 210 (352)
++.++. ..+. .+++|+.|+++++. +..+... .+..+++|+.|+++++ .++.+ |...+ ..+++
T Consensus 100 -l~~~~~--------~~~~-~l~~L~~L~L~~N~-i~~~~~~--~~~~l~~L~~L~L~~N-~l~~l-~~~~~~~~~~l~~ 164 (361)
T 2xot_A 100 -LHTLDE--------FLFS-DLQALEVLLLYNNH-IVVVDRN--AFEDMAQLQKLYLSQN-QISRF-PVELIKDGNKLPK 164 (361)
T ss_dssp -CCEECT--------TTTT-TCTTCCEEECCSSC-CCEECTT--TTTTCTTCCEEECCSS-CCCSC-CGGGTC----CTT
T ss_pred -CCcCCH--------HHhC-CCcCCCEEECCCCc-ccEECHH--HhCCcccCCEEECCCC-cCCee-CHHHhcCcccCCc
Confidence 444422 1111 67888888888764 3333221 3556788888888877 55554 44433 24566
Q ss_pred CCCCC-CCCccchhh
Q 044585 211 NKEPQ-KLTSEENFL 224 (352)
Q Consensus 211 L~~L~-~~~~l~~~~ 224 (352)
|+.|+ +.+.++.+.
T Consensus 165 L~~L~L~~N~l~~l~ 179 (361)
T 2xot_A 165 LMLLDLSSNKLKKLP 179 (361)
T ss_dssp CCEEECCSSCCCCCC
T ss_pred CCEEECCCCCCCccC
Confidence 66666 555555443
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.85 E-value=2.5e-09 Score=102.48 Aligned_cols=101 Identities=13% Similarity=0.195 Sum_probs=47.9
Q ss_pred CccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceeccC
Q 044585 8 SLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWHG 87 (352)
Q Consensus 8 ~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~ 87 (352)
.|++|++.+| .++.+|. +..+++|++|++++ ..+..+|..++.+++|+.|+++++. ++.++ .
T Consensus 442 ~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~--------------N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~ 503 (567)
T 1dce_A 442 DVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSH--------------NRLRALPPALAALRCLEVLQASDNA-LENVD-G 503 (567)
T ss_dssp TCSEEECTTS-CCSSCCC-GGGGTTCCEEECCS--------------SCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-G
T ss_pred CceEEEecCC-CCCCCcC-ccccccCcEeecCc--------------ccccccchhhhcCCCCCEEECCCCC-CCCCc-c
Confidence 3555555555 4444444 44555555555552 1223444444455555555555544 44433 2
Q ss_pred CCCCCCCCCCccEEEEecCCCCcccC-CchhhhcCCCCcEEEEccC
Q 044585 88 QAVPVSFFNNLRQLAVDDCTNMSSAI-PTNLLRCLNNLRCLEVRNC 132 (352)
Q Consensus 88 ~~l~~~~l~~L~~L~l~~c~~l~~~~-~~~~~~~l~~L~~L~l~~~ 132 (352)
. +.+++|+.|++++| .+.... |.. +..+++|+.|++++|
T Consensus 504 l----~~l~~L~~L~Ls~N-~l~~~~~p~~-l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 504 V----ANLPRLQELLLCNN-RLQQSAAIQP-LVSCPRLVLLNLQGN 543 (567)
T ss_dssp G----TTCSSCCEEECCSS-CCCSSSTTGG-GGGCTTCCEEECTTS
T ss_pred c----CCCCCCcEEECCCC-CCCCCCCcHH-HhcCCCCCEEEecCC
Confidence 1 23555555555554 343332 222 444555555555554
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.81 E-value=2.3e-09 Score=84.08 Aligned_cols=105 Identities=18% Similarity=0.290 Sum_probs=80.8
Q ss_pred eecCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhh-hceeeeccCccceeEeccCCCcc
Q 044585 4 LEFPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQK-CYEVMIGFRDIEHLQLSHFPRLR 82 (352)
Q Consensus 4 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~l~ 82 (352)
..+++|++|++.+| .++.+ ..+..+++|++|++++| .+.. +|..+..+++|++|+++++. ++
T Consensus 39 ~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n--------------~i~~~~~~~~~~l~~L~~L~ls~N~-i~ 101 (149)
T 2je0_A 39 DEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDN--------------RVSGGLEVLAEKCPNLTHLNLSGNK-IK 101 (149)
T ss_dssp TTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSS--------------CCCSCTHHHHHHCTTCCEEECTTSC-CC
T ss_pred hhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCC--------------cccchHHHHhhhCCCCCEEECCCCc-CC
Confidence 45899999999999 77777 66788999999999954 2333 55555678999999999987 76
Q ss_pred eec--cCCCCCCCCCCCccEEEEecCCCCcccCC--chhhhcCCCCcEEEEc
Q 044585 83 EIW--HGQAVPVSFFNNLRQLAVDDCTNMSSAIP--TNLLRCLNNLRCLEVR 130 (352)
Q Consensus 83 ~~~--~~~~l~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~l~~L~~L~l~ 130 (352)
..+ ... +.+++|++|++++| .+...++ ...+..+++|+.|+++
T Consensus 102 ~~~~~~~~----~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 102 DLSTIEPL----KKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp SHHHHGGG----GGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ChHHHHHH----hhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 643 222 46899999999998 5666554 1347789999998775
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.81 E-value=1.5e-08 Score=83.09 Aligned_cols=101 Identities=13% Similarity=0.169 Sum_probs=59.8
Q ss_pred cEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhcee--eeccCccceeEeccCCCcceeccC
Q 044585 10 EQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEV--MIGFRDIEHLQLSHFPRLREIWHG 87 (352)
Q Consensus 10 ~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~L~~L~l~~~~~l~~~~~~ 87 (352)
+++++.++ +++.+|..+. .+|++|+++++ .+..++.. +..+++|++|+++++. ++.+...
T Consensus 11 ~~l~~s~~-~l~~ip~~~~--~~l~~L~l~~n--------------~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~ 72 (192)
T 1w8a_A 11 TTVDCTGR-GLKEIPRDIP--LHTTELLLNDN--------------ELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPN 72 (192)
T ss_dssp TEEECTTS-CCSSCCSCCC--TTCSEEECCSC--------------CCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTT
T ss_pred CEEEcCCC-CcCcCccCCC--CCCCEEECCCC--------------cCCccCCccccccCCCCCEEECCCCC-CCCcCHh
Confidence 56777776 6677766553 37777777743 33333332 4566777777777765 5544222
Q ss_pred CCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCC
Q 044585 88 QAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCD 133 (352)
Q Consensus 88 ~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~ 133 (352)
. + ..+++|++|+++++ .+....+. .+..+++|++|++++|.
T Consensus 73 ~-~--~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~N~ 113 (192)
T 1w8a_A 73 A-F--EGASHIQELQLGEN-KIKEISNK-MFLGLHQLKTLNLYDNQ 113 (192)
T ss_dssp T-T--TTCTTCCEEECCSC-CCCEECSS-SSTTCTTCCEEECCSSC
T ss_pred H-c--CCcccCCEEECCCC-cCCccCHH-HhcCCCCCCEEECCCCc
Confidence 2 1 34667777777776 45554442 24566777777777654
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.81 E-value=1.6e-08 Score=83.05 Aligned_cols=124 Identities=15% Similarity=0.215 Sum_probs=81.0
Q ss_pred cEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceeccCCC
Q 044585 10 EQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWHGQA 89 (352)
Q Consensus 10 ~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 89 (352)
+++++.++ .++.+|..+ .++|++|++++ ..+..+|..+..+++|+.|+++++. ++.+....
T Consensus 13 ~~l~~~~~-~l~~ip~~~--~~~l~~L~L~~--------------n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~- 73 (193)
T 2wfh_A 13 TVVRCSNK-GLKVLPKGI--PRDVTELYLDG--------------NQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQS- 73 (193)
T ss_dssp TEEECTTS-CCSSCCSCC--CTTCCEEECCS--------------SCCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTT-
T ss_pred CEEEcCCC-CCCcCCCCC--CCCCCEEECCC--------------CcCchhHHHhhcccCCCEEECCCCc-CCEeCHhH-
Confidence 56777776 677777655 46888888884 3444566666778888888888877 66654433
Q ss_pred CCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccc
Q 044585 90 VPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDL 166 (352)
Q Consensus 90 l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 166 (352)
+ ..+++|++|+++++ .+....+. .+..+++|+.|++++|. +..++. ..+. .+++|+.|++.+.
T Consensus 74 f--~~l~~L~~L~Ls~N-~l~~i~~~-~f~~l~~L~~L~L~~N~-l~~~~~--------~~~~-~l~~L~~L~L~~N 136 (193)
T 2wfh_A 74 F--SNMTQLLTLILSYN-RLRCIPPR-TFDGLKSLRLLSLHGND-ISVVPE--------GAFN-DLSALSHLAIGAN 136 (193)
T ss_dssp T--TTCTTCCEEECCSS-CCCBCCTT-TTTTCTTCCEEECCSSC-CCBCCT--------TTTT-TCTTCCEEECCSS
T ss_pred c--cCCCCCCEEECCCC-ccCEeCHH-HhCCCCCCCEEECCCCC-CCeeCh--------hhhh-cCccccEEEeCCC
Confidence 2 35788888888887 56665543 36678888888888864 333321 0111 4666777766654
No 128
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.74 E-value=1.1e-06 Score=80.49 Aligned_cols=215 Identities=8% Similarity=0.091 Sum_probs=113.6
Q ss_pred CccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeecccccc
Q 044585 68 RDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAK 147 (352)
Q Consensus 68 ~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 147 (352)
.+|+++.+.. .++.+.... + ..+++|+.+.+.++ .+....... +. +.+|+.+.+.. .++.+..
T Consensus 157 ~~L~~i~lp~--~l~~I~~~a-F--~~c~~L~~l~l~~n-~l~~I~~~a-F~-~~~L~~l~lp~--~l~~I~~------- 219 (401)
T 4fdw_A 157 STVQEIVFPS--TLEQLKEDI-F--YYCYNLKKADLSKT-KITKLPAST-FV-YAGIEEVLLPV--TLKEIGS------- 219 (401)
T ss_dssp CCCCEEECCT--TCCEECSST-T--TTCTTCCEEECTTS-CCSEECTTT-TT-TCCCSEEECCT--TCCEECT-------
T ss_pred CCceEEEeCC--CccEehHHH-h--hCcccCCeeecCCC-cceEechhh-Ee-ecccCEEEeCC--chheehh-------
Confidence 3566666664 344444433 2 23667777777654 344433322 22 46677777653 2333311
Q ss_pred ccccCCCCcccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccc-----
Q 044585 148 EEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEE----- 221 (352)
Q Consensus 148 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~----- 221 (352)
..+. .+++|+.+.+.. +++.+... .+.. .+|+.+.+.+ .++.+ +...+.+|++|+.+. ..+.+.
T Consensus 220 -~aF~-~~~~L~~l~l~~--~l~~I~~~--aF~~-~~L~~i~lp~--~i~~I-~~~aF~~c~~L~~l~l~~~~~~~~~~~ 289 (401)
T 4fdw_A 220 -QAFL-KTSQLKTIEIPE--NVSTIGQE--AFRE-SGITTVKLPN--GVTNI-ASRAFYYCPELAEVTTYGSTFNDDPEA 289 (401)
T ss_dssp -TTTT-TCTTCCCEECCT--TCCEECTT--TTTT-CCCSEEEEET--TCCEE-CTTTTTTCTTCCEEEEESSCCCCCTTC
T ss_pred -hHhh-CCCCCCEEecCC--CccCcccc--cccc-CCccEEEeCC--CccEE-ChhHhhCCCCCCEEEeCCccccCCccc
Confidence 1111 456677777643 23333221 1222 5777777744 45554 445555777777776 222211
Q ss_pred hhhhhcccCCCCCcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccC-CccCCCCCcEEeec
Q 044585 222 NFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVP-ASWHLENLEALKVS 300 (352)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~ 300 (352)
.+... .+..+++|+.+++.+ .++.+...++ ..+++|+.+.+.. .++.+.. .+..+ +|+.+++.
T Consensus 290 ~I~~~--------aF~~c~~L~~l~l~~--~i~~I~~~aF---~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~ 353 (401)
T 4fdw_A 290 MIHPY--------CLEGCPKLARFEIPE--SIRILGQGLL---GGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVE 353 (401)
T ss_dssp EECTT--------TTTTCTTCCEECCCT--TCCEECTTTT---TTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEEC
T ss_pred EECHH--------HhhCCccCCeEEeCC--ceEEEhhhhh---cCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEc
Confidence 11111 145667788887774 4777777776 6777888887754 3555543 45566 78888886
Q ss_pred CCccccccccccccCccc-cccEEEEec
Q 044585 301 KCHRLINLLTLSTSRSLI-ILQSMTIAD 327 (352)
Q Consensus 301 ~c~~l~~~~~~~~~~~l~-~L~~L~i~~ 327 (352)
+. .+..+.. ..+..++ +++.|.+..
T Consensus 354 ~n-~~~~l~~-~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 354 GT-TPPQVFE-KVWYGFPDDITVIRVPA 379 (401)
T ss_dssp CS-SCCBCCC-SSCCCSCTTCCEEEECG
T ss_pred CC-CCccccc-ccccCCCCCccEEEeCH
Confidence 55 3334422 2344442 456666544
No 129
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.73 E-value=6.7e-07 Score=81.92 Aligned_cols=197 Identities=7% Similarity=0.067 Sum_probs=130.8
Q ss_pred eeccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeecc
Q 044585 64 MIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEE 143 (352)
Q Consensus 64 ~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 143 (352)
+..+++|+.+++.++. ++.++... +. ..+|+++.+.+ ++..+.. ..+..|++|+.+.+... ++.+...
T Consensus 176 F~~c~~L~~l~l~~n~-l~~I~~~a-F~---~~~L~~l~lp~--~l~~I~~-~aF~~~~~L~~l~l~~~--l~~I~~~-- 243 (401)
T 4fdw_A 176 FYYCYNLKKADLSKTK-ITKLPAST-FV---YAGIEEVLLPV--TLKEIGS-QAFLKTSQLKTIEIPEN--VSTIGQE-- 243 (401)
T ss_dssp TTTCTTCCEEECTTSC-CSEECTTT-TT---TCCCSEEECCT--TCCEECT-TTTTTCTTCCCEECCTT--CCEECTT--
T ss_pred hhCcccCCeeecCCCc-ceEechhh-Ee---ecccCEEEeCC--chheehh-hHhhCCCCCCEEecCCC--ccCcccc--
Confidence 3467899999998765 77776665 32 47899999975 4555443 44778999999999763 4443211
Q ss_pred ccccccccCCCCcccCeeccccccccccccccCCceeeccCcceEeeccCCC----CcccccchhhhccCCCCCCC-CCC
Q 044585 144 LNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPD----METFISNSVVHVTTNNKEPQ-KLT 218 (352)
Q Consensus 144 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~----l~~~~~~~~~~~~~~L~~L~-~~~ 218 (352)
.+. . .+|+.+.+.+ .++.+... .+..+++|+.+.+.+... ...+ +...+.+|++|+.+. . +
T Consensus 244 ------aF~-~-~~L~~i~lp~--~i~~I~~~--aF~~c~~L~~l~l~~~~~~~~~~~~I-~~~aF~~c~~L~~l~l~-~ 309 (401)
T 4fdw_A 244 ------AFR-E-SGITTVKLPN--GVTNIASR--AFYYCPELAEVTTYGSTFNDDPEAMI-HPYCLEGCPKLARFEIP-E 309 (401)
T ss_dssp ------TTT-T-CCCSEEEEET--TCCEECTT--TTTTCTTCCEEEEESSCCCCCTTCEE-CTTTTTTCTTCCEECCC-T
T ss_pred ------ccc-c-CCccEEEeCC--CccEEChh--HhhCCCCCCEEEeCCccccCCcccEE-CHHHhhCCccCCeEEeC-C
Confidence 111 2 5788887733 24433222 466789999999977521 1233 556666889998887 4 3
Q ss_pred ccchhhhhcccCCCCCcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccC-CccCC-CCCcE
Q 044585 219 SEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVP-ASWHL-ENLEA 296 (352)
Q Consensus 219 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~-~~L~~ 296 (352)
.++.+.... +..+++|+.+.|.. .++.+...++ ..+ +|+.+.+.++. +..++. .+..+ .+++.
T Consensus 310 ~i~~I~~~a--------F~~c~~L~~l~lp~--~l~~I~~~aF---~~~-~L~~l~l~~n~-~~~l~~~~F~~~~~~l~~ 374 (401)
T 4fdw_A 310 SIRILGQGL--------LGGNRKVTQLTIPA--NVTQINFSAF---NNT-GIKEVKVEGTT-PPQVFEKVWYGFPDDITV 374 (401)
T ss_dssp TCCEECTTT--------TTTCCSCCEEEECT--TCCEECTTSS---SSS-CCCEEEECCSS-CCBCCCSSCCCSCTTCCE
T ss_pred ceEEEhhhh--------hcCCCCccEEEECc--cccEEcHHhC---CCC-CCCEEEEcCCC-CcccccccccCCCCCccE
Confidence 344443322 46678999999965 5888888888 677 99999999873 344432 34455 47888
Q ss_pred EeecC
Q 044585 297 LKVSK 301 (352)
Q Consensus 297 L~l~~ 301 (352)
+++..
T Consensus 375 l~vp~ 379 (401)
T 4fdw_A 375 IRVPA 379 (401)
T ss_dssp EEECG
T ss_pred EEeCH
Confidence 88854
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.72 E-value=2.5e-08 Score=81.84 Aligned_cols=107 Identities=18% Similarity=0.281 Sum_probs=83.2
Q ss_pred CCccEEeccccccceEeccC--CCCCCCceEEEecccccCcceeecCccchhhhhh-ceeeeccCccceeEeccCCCcce
Q 044585 7 PSLEQVSMTHCPNMKTFSRG--ISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKC-YEVMIGFRDIEHLQLSHFPRLRE 83 (352)
Q Consensus 7 ~~L~~L~l~~~~~l~~l~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~ 83 (352)
+++++|++.++ .++.++.. +..+++|++|+++++ .+..+ |..+..+++|++|+++++. ++.
T Consensus 29 ~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N--------------~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~ 92 (192)
T 1w8a_A 29 LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN--------------QLTGIEPNAFEGASHIQELQLGENK-IKE 92 (192)
T ss_dssp TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS--------------CCCCBCTTTTTTCTTCCEEECCSCC-CCE
T ss_pred CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCC--------------CCCCcCHhHcCCcccCCEEECCCCc-CCc
Confidence 48999999998 78877754 678999999999954 23333 4556688999999999988 776
Q ss_pred eccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCC
Q 044585 84 IWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDL 134 (352)
Q Consensus 84 ~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~ 134 (352)
++... + ..+++|++|+++++ .+....+.. +..+++|++|+++++..
T Consensus 93 ~~~~~-~--~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 93 ISNKM-F--LGLHQLKTLNLYDN-QISCVMPGS-FEHLNSLTSLNLASNPF 138 (192)
T ss_dssp ECSSS-S--TTCTTCCEEECCSS-CCCEECTTS-STTCTTCCEEECTTCCB
T ss_pred cCHHH-h--cCCCCCCEEECCCC-cCCeeCHHH-hhcCCCCCEEEeCCCCc
Confidence 65543 2 35899999999998 576665543 67889999999998763
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.72 E-value=1.7e-08 Score=81.49 Aligned_cols=133 Identities=11% Similarity=0.071 Sum_probs=85.7
Q ss_pred eeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCcceeeccccccccccc
Q 044585 179 IIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLW 257 (352)
Q Consensus 179 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 257 (352)
...+++|+.|.++++ .++.+ + .+....++|+.|+ +.+.++.+ . .++.+++|++|++++ +.++.++
T Consensus 15 ~~~~~~L~~L~l~~n-~l~~i-~-~~~~~~~~L~~L~Ls~N~l~~~-~---------~l~~l~~L~~L~Ls~-N~l~~~~ 80 (176)
T 1a9n_A 15 YTNAVRDRELDLRGY-KIPVI-E-NLGATLDQFDAIDFSDNEIRKL-D---------GFPLLRRLKTLLVNN-NRICRIG 80 (176)
T ss_dssp EECTTSCEEEECTTS-CCCSC-C-CGGGGTTCCSEEECCSSCCCEE-C---------CCCCCSSCCEEECCS-SCCCEEC
T ss_pred cCCcCCceEEEeeCC-CCchh-H-HhhhcCCCCCEEECCCCCCCcc-c---------ccccCCCCCEEECCC-CcccccC
Confidence 334556666666665 34433 2 1222233666666 44455443 1 145678899999998 4677776
Q ss_pred ccccccccccCCcceEEEecCCCcccccC--CccCCCCCcEEeecCCccccccccc--cccCccccccEEEEecccc
Q 044585 258 KENDESNKAFANLKSLEIFECSKLQKLVP--ASWHLENLEALKVSKCHRLINLLTL--STSRSLIILQSMTIADCKR 330 (352)
Q Consensus 258 ~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~l~~L~~L~i~~c~~ 330 (352)
...+ ..+++|+.|+++++ .++.++. .+..+++|++|++++++ ++.++.. .....+++|+.|++.++..
T Consensus 81 ~~~~---~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 81 EGLD---QALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp SCHH---HHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred cchh---hcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 5544 57889999999887 5677765 66788999999997774 4454331 1356678899998888753
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.71 E-value=2.8e-08 Score=81.61 Aligned_cols=108 Identities=16% Similarity=0.171 Sum_probs=84.5
Q ss_pred cCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhc-eeeeccCccceeEeccCCCccee
Q 044585 6 FPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCY-EVMIGFRDIEHLQLSHFPRLREI 84 (352)
Q Consensus 6 l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~ 84 (352)
.++|++|++.++ .++.+|..+..+++|++|+++++. +..++ ..+..+++|++|+++++. ++.+
T Consensus 30 ~~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~--------------i~~i~~~~f~~l~~L~~L~Ls~N~-l~~i 93 (193)
T 2wfh_A 30 PRDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNR--------------ISTLSNQSFSNMTQLLTLILSYNR-LRCI 93 (193)
T ss_dssp CTTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSC--------------CCCCCTTTTTTCTTCCEEECCSSC-CCBC
T ss_pred CCCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCc--------------CCEeCHhHccCCCCCCEEECCCCc-cCEe
Confidence 368999999998 788888888899999999999543 33333 335678999999999988 7765
Q ss_pred ccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCC
Q 044585 85 WHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDL 134 (352)
Q Consensus 85 ~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~ 134 (352)
+... + ..+++|++|+++++ .+...++ ..+..+++|+.|+++++..
T Consensus 94 ~~~~-f--~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 94 PPRT-F--DGLKSLRLLSLHGN-DISVVPE-GAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CTTT-T--TTCTTCCEEECCSS-CCCBCCT-TTTTTCTTCCEEECCSSCE
T ss_pred CHHH-h--CCCCCCCEEECCCC-CCCeeCh-hhhhcCccccEEEeCCCCe
Confidence 5443 3 35899999999998 5665443 4467899999999998753
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.71 E-value=1.8e-10 Score=95.25 Aligned_cols=137 Identities=18% Similarity=0.238 Sum_probs=92.3
Q ss_pred ceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceeccCCCCCCCCCCCcc
Q 044585 20 MKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLR 99 (352)
Q Consensus 20 l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~ 99 (352)
++.+|..+..+++|++|++++| .+..+| .+..+++|+.|+++++. ++.++... ..+++|+
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n--------------~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~----~~~~~L~ 96 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTN--------------NIEKIS-SLSGMENLRILSLGRNL-IKKIENLD----AVADTLE 96 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEE--------------EESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHH----HHHHHCS
T ss_pred HhhhhHHHhcCCCCCEEECCCC--------------CCcccc-ccccCCCCCEEECCCCC-cccccchh----hcCCcCC
Confidence 3444446778999999999943 344455 56688999999999886 66543322 3468999
Q ss_pred EEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeecccccccccccccc----
Q 044585 100 QLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNF---- 175 (352)
Q Consensus 100 ~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~---- 175 (352)
+|++++| .+...+ .+..+++|++|++++|. +..++... .+. .+++|+.|++.+++-....+..
T Consensus 97 ~L~L~~N-~l~~l~---~~~~l~~L~~L~l~~N~-i~~~~~~~-------~l~-~l~~L~~L~l~~N~l~~~~~~~~~~~ 163 (198)
T 1ds9_A 97 ELWISYN-QIASLS---GIEKLVNLRVLYMSNNK-ITNWGEID-------KLA-ALDKLEDLLLAGNPLYNDYKENNATS 163 (198)
T ss_dssp EEEEEEE-ECCCHH---HHHHHHHSSEEEESEEE-CCCHHHHH-------HHT-TTTTCSEEEECSCHHHHHHHTTTTHH
T ss_pred EEECcCC-cCCcCC---ccccCCCCCEEECCCCc-CCchhHHH-------HHh-cCCCCCEEEecCCccccccccccchH
Confidence 9999998 566543 36688999999999875 33322211 112 7899999999887532221110
Q ss_pred ---CCceeeccCcceEe
Q 044585 176 ---TGNIIELSELENLT 189 (352)
Q Consensus 176 ---~~~~~~~~~L~~L~ 189 (352)
...+..+++|+.|+
T Consensus 164 ~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 164 EYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHHHHCSSCSEEC
T ss_pred HHHHHHHHhCCCcEEEC
Confidence 00356789999987
No 134
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.65 E-value=1.7e-08 Score=99.69 Aligned_cols=108 Identities=16% Similarity=0.125 Sum_probs=70.8
Q ss_pred ecCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCccee
Q 044585 5 EFPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREI 84 (352)
Q Consensus 5 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~ 84 (352)
.+++|++|+|.+| .+..+|..++.+++|++|+|++ ..+..+|..+..+++|++|+|+++. ++.+
T Consensus 222 ~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~--------------N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~l 285 (727)
T 4b8c_D 222 DDQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNG--------------NSLTELPAEIKNLSNLRVLDLSHNR-LTSL 285 (727)
T ss_dssp CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTT--------------SCCSCCCGGGGGGTTCCEEECTTSC-CSSC
T ss_pred cCCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeC--------------CcCcccChhhhCCCCCCEEeCcCCc-CCcc
Confidence 4567777777776 5556666666677777777773 2334566666677778888877776 6655
Q ss_pred ccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCc
Q 044585 85 WHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLI 135 (352)
Q Consensus 85 ~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l 135 (352)
+... +.+++|++|+|++| .+..+ |.. +..+++|+.|++++|...
T Consensus 286 p~~~----~~l~~L~~L~L~~N-~l~~l-p~~-~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 286 PAEL----GSCFQLKYFYFFDN-MVTTL-PWE-FGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp CSSG----GGGTTCSEEECCSS-CCCCC-CSS-TTSCTTCCCEECTTSCCC
T ss_pred Chhh----cCCCCCCEEECCCC-CCCcc-Chh-hhcCCCccEEeCCCCccC
Confidence 4443 45777778877776 45543 333 567777778877776543
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.64 E-value=8.6e-08 Score=77.36 Aligned_cols=126 Identities=14% Similarity=0.206 Sum_probs=82.0
Q ss_pred ccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhcee-eeccCccceeEeccCCCcceeccC
Q 044585 9 LEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEV-MIGFRDIEHLQLSHFPRLREIWHG 87 (352)
Q Consensus 9 L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~ 87 (352)
.+.+++.++ +++.+|..+ .++|++|+++++. +..++.. +..+++|++|+++++. ++.++..
T Consensus 9 ~~~l~~~~~-~l~~~p~~~--~~~l~~L~l~~n~--------------l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~ 70 (177)
T 2o6r_A 9 GTEIRCNSK-GLTSVPTGI--PSSATRLELESNK--------------LQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDG 70 (177)
T ss_dssp TTEEECCSS-CCSSCCTTC--CTTCSEEECCSSC--------------CCCCCTTTTTTCTTCSEEECCSSC-CCCCCTT
T ss_pred CCEEEecCC-CCccCCCCC--CCCCcEEEeCCCc--------------ccEeCHHHhcCcccccEEECCCCc-ceEeChh
Confidence 456777776 677777554 4788888888432 3333332 3567888999988876 6654433
Q ss_pred CCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeecccccc
Q 044585 88 QAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLP 167 (352)
Q Consensus 88 ~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 167 (352)
. + ..+++|++|+++++ .+...++ ..+..+++|+.|++++|. ++.++.. .+. .+++|+.|++.+.+
T Consensus 71 ~-~--~~l~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~-l~~~~~~--------~~~-~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 71 V-F--DKLTKLTILYLHEN-KLQSLPN-GVFDKLTQLKELALDTNQ-LKSVPDG--------IFD-RLTSLQKIWLHTNP 135 (177)
T ss_dssp T-T--TTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CSCCCTT--------TTT-TCTTCCEEECCSSC
T ss_pred H-c--cCCCccCEEECCCC-CccccCH-HHhhCCcccCEEECcCCc-ceEeCHH--------Hhc-CCcccCEEEecCCC
Confidence 2 2 35788899999887 5665443 335678889999998864 4443221 111 57888888887764
No 136
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.62 E-value=1.6e-08 Score=80.83 Aligned_cols=88 Identities=6% Similarity=0.192 Sum_probs=66.4
Q ss_pred CcceeecccccccccccccccccccccCCcceEEEecCCCccccc-CCccC----CCCCcEEeecCCccccccccccccC
Q 044585 241 QLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLV-PASWH----LENLEALKVSKCHRLINLLTLSTSR 315 (352)
Q Consensus 241 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~----~~~L~~L~l~~c~~l~~~~~~~~~~ 315 (352)
.|+.|++++|. +++.....+ ..+++|+.|++++|..+++-- ..+.. +++|++|++++|.++++.....+ .
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L---~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L-~ 136 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHM---EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL-H 136 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGG---TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-G
T ss_pred eEeEEeCcCCC-ccHHHHHHh---cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-h
Confidence 78999999986 666554444 688999999999998777421 11122 35799999999999988765443 4
Q ss_pred ccccccEEEEecccccce
Q 044585 316 SLIILQSMTIADCKRIEE 333 (352)
Q Consensus 316 ~l~~L~~L~i~~c~~l~~ 333 (352)
.+++|++|++++|+.+++
T Consensus 137 ~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GCTTCCEEEEESCTTCCC
T ss_pred cCCCCCEEECCCCCCCCc
Confidence 689999999999998876
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.57 E-value=2.9e-07 Score=74.25 Aligned_cols=107 Identities=16% Similarity=0.116 Sum_probs=65.7
Q ss_pred ccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCcceeecccccccccccccc
Q 044585 182 LSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKEN 260 (352)
Q Consensus 182 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~ 260 (352)
+++|+.|.++++ .++.+ +...+..+++|+.|+ ..+.++.+.... ++.+++|++|++++ +.++.++...
T Consensus 27 ~~~l~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~--------~~~l~~L~~L~l~~-N~l~~~~~~~ 95 (177)
T 2o6r_A 27 PSSATRLELESN-KLQSL-PHGVFDKLTQLTKLSLSQNQIQSLPDGV--------FDKLTKLTILYLHE-NKLQSLPNGV 95 (177)
T ss_dssp CTTCSEEECCSS-CCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTT--------TTTCTTCCEEECCS-SCCCCCCTTT
T ss_pred CCCCcEEEeCCC-cccEe-CHHHhcCcccccEEECCCCcceEeChhH--------ccCCCccCEEECCC-CCccccCHHH
Confidence 368888888876 45554 333334667777776 555555443321 24566777777777 4566665554
Q ss_pred cccccccCCcceEEEecCCCcccccCC-ccCCCCCcEEeecCCc
Q 044585 261 DESNKAFANLKSLEIFECSKLQKLVPA-SWHLENLEALKVSKCH 303 (352)
Q Consensus 261 ~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~c~ 303 (352)
+ ..+++|++|+++++ .++.++.. +..+++|++|++++++
T Consensus 96 ~---~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 96 F---DKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp T---TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred h---hCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence 4 45677777777776 45566543 3556777777776664
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.54 E-value=9.5e-10 Score=90.83 Aligned_cols=136 Identities=21% Similarity=0.227 Sum_probs=93.8
Q ss_pred hhhhhceeeeccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCc
Q 044585 56 TIQKCYEVMIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLI 135 (352)
Q Consensus 56 ~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l 135 (352)
.+..+|..+..+++|++|+++++. ++.++ .. ..+++|++|++++| .+...+. .+..+++|++|++++|. +
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls~n~-l~~l~-~~----~~l~~L~~L~l~~n-~l~~l~~--~~~~~~~L~~L~L~~N~-l 105 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALSTNN-IEKIS-SL----SGMENLRILSLGRN-LIKKIEN--LDAVADTLEELWISYNQ-I 105 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECSEEE-ESCCC-CH----HHHTTCCEEEEEEE-EECSCSS--HHHHHHHCSEEEEEEEE-C
T ss_pred cHhhhhHHHhcCCCCCEEECCCCC-Ccccc-cc----ccCCCCCEEECCCC-Ccccccc--hhhcCCcCCEEECcCCc-C
Confidence 455566677789999999999886 76654 22 36899999999998 5665432 35667899999999974 4
Q ss_pred ceeeeeccccccccccCCCCcccCeeccccccccccccccCCceeeccCcceEeeccCCCCccccc---------chhhh
Q 044585 136 EEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFIS---------NSVVH 206 (352)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~---------~~~~~ 206 (352)
..++.+. .+++|+.|+++++. +..+.... .+..+++|+.|++++++ +....| .....
T Consensus 106 ~~l~~~~-----------~l~~L~~L~l~~N~-i~~~~~~~-~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~ 171 (198)
T 1ds9_A 106 ASLSGIE-----------KLVNLRVLYMSNNK-ITNWGEID-KLAALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVK 171 (198)
T ss_dssp CCHHHHH-----------HHHHSSEEEESEEE-CCCHHHHH-HHTTTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHHHH
T ss_pred CcCCccc-----------cCCCCCEEECCCCc-CCchhHHH-HHhcCCCCCEEEecCCc-cccccccccchHHHHHHHHH
Confidence 4443222 68899999998764 44322111 35668999999999884 332222 12345
Q ss_pred ccCCCCCCC
Q 044585 207 VTTNNKEPQ 215 (352)
Q Consensus 207 ~~~~L~~L~ 215 (352)
.+++|+.|+
T Consensus 172 ~l~~L~~Ld 180 (198)
T 1ds9_A 172 RLPNLKKLD 180 (198)
T ss_dssp HCSSCSEEC
T ss_pred hCCCcEEEC
Confidence 788888887
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.52 E-value=2.2e-07 Score=74.83 Aligned_cols=101 Identities=18% Similarity=0.202 Sum_probs=64.6
Q ss_pred cEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhh-ceeeeccCccceeEeccCCCcceeccCC
Q 044585 10 EQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKC-YEVMIGFRDIEHLQLSHFPRLREIWHGQ 88 (352)
Q Consensus 10 ~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 88 (352)
+.+++.++ .++.+|..+ .++|++|+++++ .+..+ |..+..+++|++|+++++. ++.++...
T Consensus 15 ~~l~~~~n-~l~~iP~~~--~~~L~~L~Ls~N--------------~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~ 76 (174)
T 2r9u_A 15 TLVNCQNI-RLASVPAGI--PTDKQRLWLNNN--------------QITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGV 76 (174)
T ss_dssp SEEECCSS-CCSSCCSCC--CTTCSEEECCSS--------------CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT
T ss_pred cEEEeCCC-CCCccCCCc--CCCCcEEEeCCC--------------CccccCHHHhcCCcCCCEEECCCCC-CCccChhH
Confidence 56777776 677777665 377888888843 23333 3344567778888888775 66654432
Q ss_pred CCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCC
Q 044585 89 AVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCD 133 (352)
Q Consensus 89 ~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~ 133 (352)
+ ..+++|++|+++++ .+...++ ..+..+++|+.|++++|.
T Consensus 77 -~--~~l~~L~~L~L~~N-~l~~l~~-~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 77 -F--DKLTQLTQLDLNDN-HLKSIPR-GAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp -T--TTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCSEEECCSSC
T ss_pred -h--CCcchhhEEECCCC-ccceeCH-HHhccccCCCEEEeCCCC
Confidence 2 24677888888776 4555433 335667778888887764
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.52 E-value=2.2e-07 Score=74.48 Aligned_cols=102 Identities=19% Similarity=0.203 Sum_probs=67.6
Q ss_pred ccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhh-ceeeeccCccceeEeccCCCcceeccC
Q 044585 9 LEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKC-YEVMIGFRDIEHLQLSHFPRLREIWHG 87 (352)
Q Consensus 9 L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~ 87 (352)
.+++++.++ .++.+|..+ .++|++|+++++ .+..+ |..+..+++|++|+++++. ++.++..
T Consensus 11 ~~~l~~s~n-~l~~ip~~~--~~~l~~L~L~~N--------------~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~ 72 (170)
T 3g39_A 11 GTTVDCSGK-SLASVPTGI--PTTTQVLYLYDN--------------QITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAG 72 (170)
T ss_dssp TTEEECTTS-CCSSCCSCC--CTTCSEEECCSS--------------CCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTT
T ss_pred CCEEEeCCC-CcCccCccC--CCCCcEEEcCCC--------------cCCccChhhhcCcccCCEEECCCCC-cCccChh
Confidence 567788776 677777665 478888888843 33333 3345577788888888776 6665443
Q ss_pred CCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCC
Q 044585 88 QAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCD 133 (352)
Q Consensus 88 ~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~ 133 (352)
. + ..+++|++|+++++ .+...++ ..+..+++|+.|+++++.
T Consensus 73 ~-f--~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 73 V-F--DKLTQLTQLSLNDN-QLKSIPR-GAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp T-T--TTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC
T ss_pred h-c--cCCCCCCEEECCCC-ccCEeCH-HHhcCCCCCCEEEeCCCC
Confidence 3 2 24778888888887 5555443 335677888888887765
No 141
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.49 E-value=1.1e-07 Score=93.92 Aligned_cols=111 Identities=15% Similarity=0.145 Sum_probs=71.4
Q ss_pred ccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEE
Q 044585 24 SRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAV 103 (352)
Q Consensus 24 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l 103 (352)
+..+..+++|++|+|++ ..+..+|..++.+++|++|+|+++. ++.++... +.+++|+.|+|
T Consensus 217 ~~~~~~l~~L~~L~Ls~--------------n~l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~----~~l~~L~~L~L 277 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSN--------------LQIFNISANIFKYDFLTRLYLNGNS-LTELPAEI----KNLSNLRVLDL 277 (727)
T ss_dssp -----CCCCCCEEECTT--------------SCCSCCCGGGGGCCSCSCCBCTTSC-CSCCCGGG----GGGTTCCEEEC
T ss_pred hhhhccCCCCcEEECCC--------------CCCCCCChhhcCCCCCCEEEeeCCc-CcccChhh----hCCCCCCEEeC
Confidence 44456778888888883 2344566666678888888888876 66555433 46788888888
Q ss_pred ecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeecccccc
Q 044585 104 DDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLP 167 (352)
Q Consensus 104 ~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 167 (352)
++| .+..+ |.. +..+++|++|++++|. +..++.. ++ .+++|+.|+++++.
T Consensus 278 s~N-~l~~l-p~~-~~~l~~L~~L~L~~N~-l~~lp~~---------~~-~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 278 SHN-RLTSL-PAE-LGSCFQLKYFYFFDNM-VTTLPWE---------FG-NLCNLQFLGVEGNP 327 (727)
T ss_dssp TTS-CCSSC-CSS-GGGGTTCSEEECCSSC-CCCCCSS---------TT-SCTTCCCEECTTSC
T ss_pred cCC-cCCcc-Chh-hcCCCCCCEEECCCCC-CCccChh---------hh-cCCCccEEeCCCCc
Confidence 887 45543 433 5678888888888764 4444321 11 67788888887654
No 142
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.45 E-value=6.8e-08 Score=77.20 Aligned_cols=89 Identities=15% Similarity=0.261 Sum_probs=42.6
Q ss_pred CccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCC----CcccCeeccccccccccc
Q 044585 97 NLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPR----FPRLNRLRLIDLPKLKRF 172 (352)
Q Consensus 97 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~l~~~ 172 (352)
+|++|++++|. +++..... +..|++|++|++++|..+++. .+..+. . .++|++|++++|+++++-
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~-L~~~~~L~~L~L~~C~~ItD~-gL~~L~--------~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDH-MEGLQYVEKIRLCKCHYIEDG-CLERLS--------QLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGG-GTTCSCCCEEEEESCTTCCHH-HHHHHH--------TCHHHHHHCCEEEEESCTTCCHH
T ss_pred eEeEEeCcCCC-ccHHHHHH-hcCCCCCCEEEeCCCCccCHH-HHHHHH--------hcccccCCCCEEEcCCCCcCCHH
Confidence 35555555553 43332221 345555555555555544431 111000 1 134555555555555432
Q ss_pred cccCCceeeccCcceEeeccCCCCcc
Q 044585 173 CNFTGNIIELSELENLTIENCPDMET 198 (352)
Q Consensus 173 ~~~~~~~~~~~~L~~L~l~~c~~l~~ 198 (352)
-.. .+..+++|++|.+++|+.+++
T Consensus 131 Gl~--~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 131 GII--ALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHH--HGGGCTTCCEEEEESCTTCCC
T ss_pred HHH--HHhcCCCCCEEECCCCCCCCc
Confidence 111 233467777777777777765
No 143
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.42 E-value=1.1e-05 Score=73.65 Aligned_cols=82 Identities=15% Similarity=0.146 Sum_probs=59.4
Q ss_pred ccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccC-CccCCCCCcEEeecCCcccccccccccc
Q 044585 236 KLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVP-ASWHLENLEALKVSKCHRLINLLTLSTS 314 (352)
Q Consensus 236 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 314 (352)
+..+.+|+.+.+.+ .++.+...++ ..+.+|+.+.+.. .++.+.. .+..+.+|+.+.+... ++.+. ...+
T Consensus 293 F~~~~~L~~i~l~~--~i~~I~~~aF---~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~-~~aF 362 (394)
T 4fs7_A 293 FYGCSSLTEVKLLD--SVKFIGEEAF---ESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS--LRKIG-ANAF 362 (394)
T ss_dssp TTTCTTCCEEEECT--TCCEECTTTT---TTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT--CCEEC-TTTB
T ss_pred cccccccccccccc--ccceechhhh---cCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc--ccEeh-HHHh
Confidence 34567888888864 4777777777 6788899888864 4666643 5677889999988543 66663 3568
Q ss_pred CccccccEEEEec
Q 044585 315 RSLIILQSMTIAD 327 (352)
Q Consensus 315 ~~l~~L~~L~i~~ 327 (352)
..|.+|+.+.+..
T Consensus 363 ~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 363 QGCINLKKVELPK 375 (394)
T ss_dssp TTCTTCCEEEEEG
T ss_pred hCCCCCCEEEECC
Confidence 8889999998865
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.29 E-value=1.9e-06 Score=68.93 Aligned_cols=62 Identities=18% Similarity=0.160 Sum_probs=46.3
Q ss_pred cccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccC-CccCCCCCcEEeecCCc
Q 044585 237 LTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVP-ASWHLENLEALKVSKCH 303 (352)
Q Consensus 237 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~ 303 (352)
+.+++|++|++++ +.++.++...+ ..+++|++|+++++ .++.++. .+..+++|++|++++++
T Consensus 51 ~~l~~L~~L~Ls~-N~l~~l~~~~f---~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 51 DRLTQLTRLDLDN-NQLTVLPAGVF---DKLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp TTCTTCSEEECCS-SCCCCCCTTTT---TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCcccCCEEECCC-CCcCccChhhc---cCCCCCCEEECCCC-ccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 4567888888888 56777776665 57788888888887 5666665 36778888888887764
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.26 E-value=2.5e-06 Score=68.55 Aligned_cols=62 Identities=13% Similarity=0.147 Sum_probs=46.1
Q ss_pred cccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCC-ccCCCCCcEEeecCCc
Q 044585 237 LTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPA-SWHLENLEALKVSKCH 303 (352)
Q Consensus 237 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~c~ 303 (352)
+.+++|++|++++ +.++.++...+ ..+++|+.|+++++ .++.++.. +..+++|++|++++++
T Consensus 54 ~~l~~L~~L~Ls~-N~l~~i~~~~~---~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 54 DHLVNLQQLYFNS-NKLTAIPTGVF---DKLTQLTQLDLNDN-HLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp TTCTTCCEEECCS-SCCCCCCTTTT---TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred cCCcCCCEEECCC-CCCCccChhHh---CCcchhhEEECCCC-ccceeCHHHhccccCCCEEEeCCCC
Confidence 4567888888888 47777776655 57788888888876 56677654 6778888888887764
No 146
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.11 E-value=4.3e-05 Score=69.72 Aligned_cols=77 Identities=16% Similarity=0.106 Sum_probs=51.7
Q ss_pred ccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccC-CccCCCCCcEEeecCCcccccccccccc
Q 044585 236 KLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVP-ASWHLENLEALKVSKCHRLINLLTLSTS 314 (352)
Q Consensus 236 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 314 (352)
+..+.+|+.++|.. .++.+...++ ..+.+|+.+.+.. .++.+.. .+..+++|+.+++... ++.. . ..+
T Consensus 316 F~~c~~L~~i~lp~--~v~~I~~~aF---~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~~--~~~~-~-~~F 384 (394)
T 4fs7_A 316 FESCTSLVSIDLPY--LVEEIGKRSF---RGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPKR--LEQY-R-YDF 384 (394)
T ss_dssp TTTCTTCCEECCCT--TCCEECTTTT---TTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEGG--GGGG-G-GGB
T ss_pred hcCCCCCCEEEeCC--cccEEhHHhc---cCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECCC--CEEh-h-hee
Confidence 34567888888864 4777777777 6788888888864 3565543 5678888998888532 3333 1 246
Q ss_pred CccccccEE
Q 044585 315 RSLIILQSM 323 (352)
Q Consensus 315 ~~l~~L~~L 323 (352)
..|++|+.+
T Consensus 385 ~~c~~L~~I 393 (394)
T 4fs7_A 385 EDTTKFKWI 393 (394)
T ss_dssp CTTCEEEEE
T ss_pred cCCCCCcEE
Confidence 667777654
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.09 E-value=1.1e-06 Score=79.26 Aligned_cols=183 Identities=14% Similarity=0.076 Sum_probs=99.6
Q ss_pred EeccCCCCCCCceEEEecccccCcce--eecCccchhhhhhceeeeccCccceeEeccCCCcceeccCCCCCCCCCCCcc
Q 044585 22 TFSRGISSTPKLYVVQVTEREEGEHH--WEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLR 99 (352)
Q Consensus 22 ~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~ 99 (352)
.+..+..++++|+.|.+......... |.. ...+...+..+|+|++|.++++..+. ++....++|+
T Consensus 130 ~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~------~~~L~~ll~~~P~L~~L~L~g~~~l~-------l~~~~~~~L~ 196 (362)
T 2ra8_A 130 GIVENKEKFAHFEGLFWGDIDFEEQEISWIE------QVDLSPVLDAMPLLNNLKIKGTNNLS-------IGKKPRPNLK 196 (362)
T ss_dssp HHHTTHHHHTTCSEEEECCCCTTTCCGGGCB------CCBCHHHHHTCTTCCEEEEECCBTCB-------CCSCBCTTCS
T ss_pred HHHHhhhhcchhhheeecCcchhhccccccc------ccCHHHHHhcCCCCcEEEEeCCCCce-------eccccCCCCc
Confidence 34444556889999998742111100 110 01233334578999999998874332 1112368999
Q ss_pred EEEEecCCCCcccCCchhh-hcCCCCcEEEEccCCC-cceeeeeccccccccccC-CCCcccCeeccccccccccccccC
Q 044585 100 QLAVDDCTNMSSAIPTNLL-RCLNNLRCLEVRNCDL-IEEVLHLEELNAKEEHIG-PRFPRLNRLRLIDLPKLKRFCNFT 176 (352)
Q Consensus 100 ~L~l~~c~~l~~~~~~~~~-~~l~~L~~L~l~~~~~-l~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~ 176 (352)
+|.+..| .+......... ..+|+|++|+++.+.. ...-..+.. ....+. ..+|+|+.|.+.+|..........
T Consensus 197 ~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~---l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~l 272 (362)
T 2ra8_A 197 SLEIISG-GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV---FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMF 272 (362)
T ss_dssp EEEEECS-BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG---TGGGSCTTTCTTCCEEEEESCTTHHHHHHHH
T ss_pred EEEEecC-CCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH---HHHHHhcCCCCCcCEEeCCCCCCchHHHHHH
Confidence 9999887 44433222211 3689999999864211 110000111 111111 158999999998765322111100
Q ss_pred CceeeccCcceEeeccCCCCcccccchhh---hccCCCCCCC-CCCccch
Q 044585 177 GNIIELSELENLTIENCPDMETFISNSVV---HVTTNNKEPQ-KLTSEEN 222 (352)
Q Consensus 177 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~---~~~~~L~~L~-~~~~l~~ 222 (352)
.....+|+|+.|+++.+ .+++.....+. .++++|+.|+ ..+.++.
T Consensus 273 a~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 273 LESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp HHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred HhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 01234789999999665 56653222222 3578888888 5555554
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.05 E-value=0.00025 Score=64.63 Aligned_cols=83 Identities=18% Similarity=0.259 Sum_probs=54.6
Q ss_pred ccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccC-CccCCCCCcEEeecCCcccccccccccc
Q 044585 236 KLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVP-ASWHLENLEALKVSKCHRLINLLTLSTS 314 (352)
Q Consensus 236 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 314 (352)
+..++.|+.+.+.. .++.++..++ ..+.+|+.+.+.. .++.+.. .+..+.+|+.+.|.. .++.+. ...+
T Consensus 284 F~~c~~L~~i~l~~--~i~~I~~~aF---~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~--sv~~I~-~~aF 353 (394)
T 4gt6_A 284 FMNCPALQDIEFSS--RITELPESVF---AGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPS--SVTKIP-ESAF 353 (394)
T ss_dssp TTTCTTCCEEECCT--TCCEECTTTT---TTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECT--TCCBCC-GGGG
T ss_pred cccccccccccCCC--cccccCceee---cCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECc--ccCEEh-HhHh
Confidence 34566777777753 5667777766 6777888887764 3555543 456777888888843 355553 3467
Q ss_pred CccccccEEEEecc
Q 044585 315 RSLIILQSMTIADC 328 (352)
Q Consensus 315 ~~l~~L~~L~i~~c 328 (352)
..|.+|+.+.+.+.
T Consensus 354 ~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 354 SNCTALNNIEYSGS 367 (394)
T ss_dssp TTCTTCCEEEESSC
T ss_pred hCCCCCCEEEECCc
Confidence 77888888877654
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.01 E-value=7.9e-06 Score=73.19 Aligned_cols=102 Identities=14% Similarity=0.164 Sum_probs=69.0
Q ss_pred EEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhc-eeeeccCccceeEeccCCCcceeccCCC
Q 044585 11 QVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCY-EVMIGFRDIEHLQLSHFPRLREIWHGQA 89 (352)
Q Consensus 11 ~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 89 (352)
.++..+..+++.+|. +..+.+|++|+|++ +..+..++ ..+..+++|+.|+|+++. ++.++...
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~-------------~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~- 75 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIEN-------------QQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDA- 75 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCS-------------CSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTG-
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccC-------------CCCCCCcChhHhccccCCCEEECCCCc-cceeCHHH-
Confidence 345555446777888 87888899999882 13444444 345678889999998886 77655433
Q ss_pred CCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCC
Q 044585 90 VPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCD 133 (352)
Q Consensus 90 l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~ 133 (352)
+ ..+++|++|+|+++ .+...++ ..+..++ |+.|++.++.
T Consensus 76 ~--~~l~~L~~L~l~~N-~l~~~~~-~~~~~~~-L~~l~l~~N~ 114 (347)
T 2ifg_A 76 F--HFTPRLSRLNLSFN-ALESLSW-KTVQGLS-LQELVLSGNP 114 (347)
T ss_dssp G--GSCSCCCEEECCSS-CCSCCCS-TTTCSCC-CCEEECCSSC
T ss_pred h--cCCcCCCEEeCCCC-ccceeCH-HHcccCC-ceEEEeeCCC
Confidence 2 35788889998887 5665543 3344444 8888888765
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.99 E-value=5.4e-06 Score=74.66 Aligned_cols=68 Identities=18% Similarity=0.195 Sum_probs=42.2
Q ss_pred ccCCcceeecccccccccccccccccccccCCcceEEEecCCCccc-----ccCCccCCCCCcEEeecCCcccccc
Q 044585 238 TFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQK-----LVPASWHLENLEALKVSKCHRLINL 308 (352)
Q Consensus 238 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~-----l~~~~~~~~~L~~L~l~~c~~l~~~ 308 (352)
.+|+|+.|++.+|..-.... ..+.....+++|++|+++.+ .++. ++.++..+++|+.|++++| .+++.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~-~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~d~ 322 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVV-EMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYN-YLSDE 322 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHH-HHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSB-BCCHH
T ss_pred CCCCcCEEeCCCCCCchHHH-HHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCC-cCCHH
Confidence 47889999998864322111 11100125788999999765 4543 4445567889999999777 35443
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.95 E-value=0.00054 Score=61.91 Aligned_cols=33 Identities=12% Similarity=0.210 Sum_probs=24.0
Q ss_pred cCCccEEeccccccceEeccC-CCCCCCceEEEecc
Q 044585 6 FPSLEQVSMTHCPNMKTFSRG-ISSTPKLYVVQVTE 40 (352)
Q Consensus 6 l~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~ 40 (352)
..+|+.+.+-. +++.++.. |..|.+|+.+++..
T Consensus 45 ~~~i~~v~ip~--~vt~Ig~~aF~~C~~L~~I~lp~ 78 (379)
T 4h09_A 45 RDRISEVRVNS--GITSIGEANFNSCYNMTKVTVAS 78 (379)
T ss_dssp GGGCSEEEECT--TEEEECTTTTTTCTTCCEEEECT
T ss_pred ccCCEEEEeCC--CccChHHHHhhCCCCCCEEEeCC
Confidence 45677777753 57777654 56889999999873
No 152
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.84 E-value=6.4e-07 Score=81.25 Aligned_cols=11 Identities=18% Similarity=0.380 Sum_probs=5.5
Q ss_pred cCcceEeeccC
Q 044585 183 SELENLTIENC 193 (352)
Q Consensus 183 ~~L~~L~l~~c 193 (352)
++|+.|++++|
T Consensus 211 ~~L~~L~Ls~N 221 (372)
T 3un9_A 211 RQLQELNVAYN 221 (372)
T ss_dssp SCCCEEECCSS
T ss_pred CCcCeEECCCC
Confidence 44555555544
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.83 E-value=0.00071 Score=61.56 Aligned_cols=125 Identities=10% Similarity=0.073 Sum_probs=76.1
Q ss_pred eeeccCcceEeeccCCCCcccccchhhhccCCCCCCCCCCccchhhhhcccCCCCCcccccCCcceeecccccccccccc
Q 044585 179 IIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQKLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWK 258 (352)
Q Consensus 179 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~ 258 (352)
+..+.+|+.+.+.+ .+..+ ....+.++++|+.+.-...++.+... .+..+.+|+.++|.+ .++.+..
T Consensus 261 F~~c~~L~~i~lp~--~~~~I-~~~aF~~c~~L~~i~l~~~i~~I~~~--------aF~~c~~L~~i~lp~--~v~~I~~ 327 (394)
T 4gt6_A 261 FDSCAYLASVKMPD--SVVSI-GTGAFMNCPALQDIEFSSRITELPES--------VFAGCISLKSIDIPE--GITQILD 327 (394)
T ss_dssp TTTCSSCCEEECCT--TCCEE-CTTTTTTCTTCCEEECCTTCCEECTT--------TTTTCTTCCEEECCT--TCCEECT
T ss_pred eeecccccEEeccc--cccee-cCcccccccccccccCCCcccccCce--------eecCCCCcCEEEeCC--cccEehH
Confidence 44566777777754 23333 44445567777766511223222221 145678999999975 5888888
Q ss_pred cccccccccCCcceEEEecCCCcccccC-CccCCCCCcEEeecCCccccccccccccCccccccEEEEe
Q 044585 259 ENDESNKAFANLKSLEIFECSKLQKLVP-ASWHLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIA 326 (352)
Q Consensus 259 ~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~ 326 (352)
.++ ..+.+|+.+.+.. .++.+.. .+..+.+|+.+++.+..... ..+..+.+|+.+.+.
T Consensus 328 ~aF---~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~~~~-----~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 328 DAF---AGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSRSQW-----NAISTDSGLQNLPVA 386 (394)
T ss_dssp TTT---TTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCHHHH-----HTCBCCCCC------
T ss_pred hHh---hCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCceeeh-----hhhhccCCCCEEEeC
Confidence 888 7889999999964 3566643 56789999999997653221 123456667777654
No 154
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.76 E-value=6.1e-05 Score=67.34 Aligned_cols=85 Identities=15% Similarity=0.077 Sum_probs=40.1
Q ss_pred eeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCcceeecccccccccccc
Q 044585 180 IELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWK 258 (352)
Q Consensus 180 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~ 258 (352)
..+++|+.|+|+++..++.+ +...+.++++|+.|+ +.+.++.++... ++.+++|+.|+|++ +.++.++.
T Consensus 28 ~~~~~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~--------~~~l~~L~~L~l~~-N~l~~~~~ 97 (347)
T 2ifg_A 28 PGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSGLRFVAPDA--------FHFTPRLSRLNLSF-NALESLSW 97 (347)
T ss_dssp CSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSCCCEECTTG--------GGSCSCCCEEECCS-SCCSCCCS
T ss_pred CCCCCeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCCccceeCHHH--------hcCCcCCCEEeCCC-CccceeCH
Confidence 34556777777654456555 222222455555555 444444433321 23445555555555 34444444
Q ss_pred cccccccccCCcceEEEecC
Q 044585 259 ENDESNKAFANLKSLEIFEC 278 (352)
Q Consensus 259 ~~~~~~~~~~~L~~L~l~~c 278 (352)
..+ ..++ |+.|++.++
T Consensus 98 ~~~---~~~~-L~~l~l~~N 113 (347)
T 2ifg_A 98 KTV---QGLS-LQELVLSGN 113 (347)
T ss_dssp TTT---CSCC-CCEEECCSS
T ss_pred HHc---ccCC-ceEEEeeCC
Confidence 333 1222 555555443
No 155
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.76 E-value=1.3e-06 Score=79.17 Aligned_cols=174 Identities=14% Similarity=0.035 Sum_probs=95.6
Q ss_pred cCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccccccccccccCCceeeccCcceEeeccCCCCccc
Q 044585 120 CLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETF 199 (352)
Q Consensus 120 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 199 (352)
.++.|+.|++++|.. ... ........+....++|+.|+++++. +....... ....+++|+.|++++| .+++.
T Consensus 70 ~~~~L~~L~Ls~n~l-~~~----~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~-l~~~L~~L~~L~Ls~n-~l~~~ 141 (372)
T 3un9_A 70 VLSSLRQLNLAGVRM-TPV----KCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRT-LLPVFLRARKLGLQLN-SLGPE 141 (372)
T ss_dssp HHTTCCEEECTTSCC-CHH----HHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHH-THHHHHTEEEEECCSS-CCCHH
T ss_pred HHhhCCEEEecCCCC-CHH----HHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHH-HHHHHHhccHhhcCCC-CCCHH
Confidence 457899999999763 221 1111111222133689999998874 32211100 2234678999999998 55543
Q ss_pred ccchhh----hccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCcceeecccccccccccccccc-cccccCCcceE
Q 044585 200 ISNSVV----HVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDE-SNKAFANLKSL 273 (352)
Q Consensus 200 ~~~~~~----~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~-~~~~~~~L~~L 273 (352)
....+. ...++|+.|+ ..+.++......- ...+...++|++|+|+++ .+++.....++ .....++|++|
T Consensus 142 ~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l----~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L 216 (372)
T 3un9_A 142 ACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVL----MEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQEL 216 (372)
T ss_dssp HHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHH----HHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEE
T ss_pred HHHHHHHHHHhcCCccceeeCCCCCCChHHHHHH----HHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeE
Confidence 222222 2357788888 5556654221100 000234678888888885 45443211110 00355688888
Q ss_pred EEecCCCccc-----ccCCccCCCCCcEEeecCCcccccc
Q 044585 274 EIFECSKLQK-----LVPASWHLENLEALKVSKCHRLINL 308 (352)
Q Consensus 274 ~l~~c~~l~~-----l~~~~~~~~~L~~L~l~~c~~l~~~ 308 (352)
++++| .++. +...+...++|++|++++|+ +++.
T Consensus 217 ~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~-i~~~ 254 (372)
T 3un9_A 217 NVAYN-GAGDTAALALARAAREHPSLELLHLYFNE-LSSE 254 (372)
T ss_dssp ECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTSS-CCHH
T ss_pred ECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCCC-CCHH
Confidence 88887 3442 32334456788888887774 4443
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.23 E-value=0.00012 Score=59.17 Aligned_cols=90 Identities=16% Similarity=0.141 Sum_probs=40.6
Q ss_pred CCCCCceEEEeccc-ccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceeccCCCCCC--CCCCCccEEEEe
Q 044585 28 SSTPKLYVVQVTER-EEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWHGQAVPV--SFFNNLRQLAVD 104 (352)
Q Consensus 28 ~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~--~~l~~L~~L~l~ 104 (352)
...++|++|++++| .+... ....+...+...++|++|++++|. +.+..... +.. ...++|++|+++
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~---------g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~-l~~~L~~n~~L~~L~L~ 101 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVP---------TLKACAEALKTNTYVKKFSIVGTR-SNDPVAFA-LAEMLKVNNTLKSLNVE 101 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHH---------HHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHH-HHHHHHHCSSCCEEECC
T ss_pred hcCCCCCEEEecCCCCCCHH---------HHHHHHHHHHhCCCcCEEECcCCC-CChHHHHH-HHHHHHhCCCcCEEECc
Confidence 34666666666643 22211 112222333345566666666665 43221110 100 123456666666
Q ss_pred cCCCCcccCC---chhhhcCCCCcEEEE
Q 044585 105 DCTNMSSAIP---TNLLRCLNNLRCLEV 129 (352)
Q Consensus 105 ~c~~l~~~~~---~~~~~~l~~L~~L~l 129 (352)
+| .+..... ...+...++|++|++
T Consensus 102 ~N-~i~~~g~~~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 102 SN-FISGSGILALVEALQSNTSLIELRI 128 (185)
T ss_dssp SS-CCCHHHHHHHHHGGGGCSSCCEEEC
T ss_pred CC-cCCHHHHHHHHHHHHhCCCceEEEe
Confidence 66 3433221 112344556777776
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.98 E-value=0.042 Score=49.29 Aligned_cols=105 Identities=13% Similarity=0.161 Sum_probs=59.3
Q ss_pred CeeecCCccEEeccccccceEeccCC-CCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCC
Q 044585 2 YTLEFPSLEQVSMTHCPNMKTFSRGI-SSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPR 80 (352)
Q Consensus 2 ~~~~l~~L~~L~l~~~~~l~~l~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 80 (352)
++..|.+|+.+.+-. .++.++... ..+ +|+.+.+.. .+..+....+...+|+.+.+.+.
T Consensus 64 aF~~C~~L~~I~lp~--~v~~Ig~~aF~~c-~l~~i~~~~---------------~l~~I~~~aF~~~~L~~i~lp~~-- 123 (379)
T 4h09_A 64 NFNSCYNMTKVTVAS--TVTSIGDGAFADT-KLQSYTGME---------------RVKKFGDYVFQGTDLDDFEFPGA-- 123 (379)
T ss_dssp TTTTCTTCCEEEECT--TCCEECTTTTTTC-CCCEEEECT---------------TCCEECTTTTTTCCCSEEECCTT--
T ss_pred HhhCCCCCCEEEeCC--cceEechhhhcCC-CCceEECCc---------------eeeEeccceeccCCcccccCCCc--
Confidence 445688999999954 477776554 455 677776652 22333333333457888887643
Q ss_pred cceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCC
Q 044585 81 LREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCD 133 (352)
Q Consensus 81 l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~ 133 (352)
+..+.... +. -.+|+.+.+.. .+..... ..+..+.+++.+.+....
T Consensus 124 ~~~i~~~~-F~---~~~l~~~~~~~--~v~~i~~-~~f~~~~~l~~~~~~~~~ 169 (379)
T 4h09_A 124 TTEIGNYI-FY---NSSVKRIVIPK--SVTTIKD-GIGYKAENLEKIEVSSNN 169 (379)
T ss_dssp CCEECTTT-TT---TCCCCEEEECT--TCCEECS-CTTTTCTTCCEEEECTTC
T ss_pred cccccccc-cc---cceeeeeeccc--eeecccc-chhccccccccccccccc
Confidence 33333332 21 13566666654 3343332 225567788888776543
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.41 E-value=0.0024 Score=54.54 Aligned_cols=93 Identities=19% Similarity=0.163 Sum_probs=53.6
Q ss_pred eccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccc
Q 044585 65 IGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEEL 144 (352)
Q Consensus 65 ~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 144 (352)
.++++|++|+|+++. ++.+..-..+. ..+++|+.|+|+++ .+........+..+ +|++|++++|+....++...
T Consensus 167 ~~l~~L~~L~Ls~N~-l~~l~~l~~~~-~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~-- 240 (267)
T 3rw6_A 167 ENIPELLSLNLSNNR-LYRLDDMSSIV-QKAPNLKILNLSGN-ELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQS-- 240 (267)
T ss_dssp HHCTTCCEEECTTSC-CCCCGGGTTHH-HHSTTCCEEECTTS-CCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHH--
T ss_pred hhCCCCCEEECCCCC-CCCCccchhHH-hhCCCCCEEECCCC-ccCCchhhhhcccC-CcceEEccCCcCccccCcch--
Confidence 367889999988877 65532210000 25788999999887 55554322323333 88999998877543221100
Q ss_pred cccccccCCCCcccCeeccc
Q 044585 145 NAKEEHIGPRFPRLNRLRLI 164 (352)
Q Consensus 145 ~~~~~~~~~~~~~L~~L~l~ 164 (352)
......+. .+|+|+.|+-.
T Consensus 241 ~y~~~il~-~~P~L~~LDg~ 259 (267)
T 3rw6_A 241 TYISAIRE-RFPKLLRLDGH 259 (267)
T ss_dssp HHHHHHHH-HCTTCCEESSC
T ss_pred hHHHHHHH-HCcccCeECCc
Confidence 00011222 78888888754
No 159
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.04 E-value=0.0017 Score=52.26 Aligned_cols=12 Identities=25% Similarity=0.454 Sum_probs=6.7
Q ss_pred ccCcceEeeccC
Q 044585 182 LSELENLTIENC 193 (352)
Q Consensus 182 ~~~L~~L~l~~c 193 (352)
.++|++|++++|
T Consensus 35 ~~~L~~L~L~~n 46 (185)
T 1io0_A 35 DPDLEEVNLNNI 46 (185)
T ss_dssp CTTCCEEECTTC
T ss_pred CCCCCEEEecCC
Confidence 455555555555
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.75 E-value=0.0063 Score=51.96 Aligned_cols=81 Identities=19% Similarity=0.140 Sum_probs=49.0
Q ss_pred ccCCcceeecccccccccccc--cccccccccCCcceEEEecCCCcccccCCccCCC--CCcEEeecCCccccccc----
Q 044585 238 TFPQLKELKLSRLHKVQHLWK--ENDESNKAFANLKSLEIFECSKLQKLVPASWHLE--NLEALKVSKCHRLINLL---- 309 (352)
Q Consensus 238 ~~~~L~~L~l~~~~~l~~l~~--~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~--~L~~L~l~~c~~l~~~~---- 309 (352)
.+|+|+.|+|++ +.++.+.. ..+ ..+++|+.|+++++ .++.+. .+..+. +|++|++.+++--...+
T Consensus 168 ~l~~L~~L~Ls~-N~l~~l~~l~~~~---~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~ 241 (267)
T 3rw6_A 168 NIPELLSLNLSN-NRLYRLDDMSSIV---QKAPNLKILNLSGN-ELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQST 241 (267)
T ss_dssp HCTTCCEEECTT-SCCCCCGGGTTHH---HHSTTCCEEECTTS-CCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHH
T ss_pred hCCCCCEEECCC-CCCCCCccchhHH---hhCCCCCEEECCCC-ccCCch-hhhhcccCCcceEEccCCcCccccCcchh
Confidence 467888888888 56665542 111 46788888888876 455442 223333 88888888776433221
Q ss_pred -cccccCccccccEEE
Q 044585 310 -TLSTSRSLIILQSMT 324 (352)
Q Consensus 310 -~~~~~~~l~~L~~L~ 324 (352)
...+...+++|+.|+
T Consensus 242 y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 242 YISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHHCTTCCEES
T ss_pred HHHHHHHHCcccCeEC
Confidence 112445667777664
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=85.86 E-value=1.2 Score=33.16 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=26.1
Q ss_pred CCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCC
Q 044585 95 FNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDL 134 (352)
Q Consensus 95 l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~ 134 (352)
.++|++|+|+++ .+..+. ...+..+++|+.|+|.+|..
T Consensus 30 p~~l~~L~Ls~N-~l~~l~-~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 30 PVDTTELVLTGN-NLTALP-PGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp CTTCSEEECTTS-CCSSCC-TTTGGGCTTCCEEECCSSCC
T ss_pred CcCCCEEECCCC-cCCccC-hhhhhhccccCEEEecCCCe
Confidence 346888888886 555543 34467778888888887653
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=83.31 E-value=1 Score=33.40 Aligned_cols=36 Identities=17% Similarity=0.098 Sum_probs=25.9
Q ss_pred CCcceeecccccccccccccccccccccCCcceEEEecCC
Q 044585 240 PQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECS 279 (352)
Q Consensus 240 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~ 279 (352)
++|+.|+|++ +.++.++...+ ..+++|+.|++.+++
T Consensus 31 ~~l~~L~Ls~-N~l~~l~~~~f---~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 31 VDTTELVLTG-NNLTALPPGLL---DALPALRTAHLGANP 66 (130)
T ss_dssp TTCSEEECTT-SCCSSCCTTTG---GGCTTCCEEECCSSC
T ss_pred cCCCEEECCC-CcCCccChhhh---hhccccCEEEecCCC
Confidence 4678888877 57777777666 567777777777654
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=81.68 E-value=0.29 Score=39.45 Aligned_cols=64 Identities=14% Similarity=0.138 Sum_probs=30.3
Q ss_pred ccCccceeEeccCCCcceeccCCCCCC--CCCCCccEEEEecCCCCcccCCchh---hhcCCCCcEEEEccC
Q 044585 66 GFRDIEHLQLSHFPRLREIWHGQAVPV--SFFNNLRQLAVDDCTNMSSAIPTNL---LRCLNNLRCLEVRNC 132 (352)
Q Consensus 66 ~~~~L~~L~l~~~~~l~~~~~~~~l~~--~~l~~L~~L~l~~c~~l~~~~~~~~---~~~l~~L~~L~l~~~ 132 (352)
.-..|++|+|++|. +.+..... ++. ..-+.|++|+|+++ .+.......+ +..-++|++|+++++
T Consensus 68 ~N~~L~~L~L~~n~-igd~ga~a-lA~aL~~N~tL~~L~L~~N-~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 68 NSKHIEKFSLANTA-ISDSEARG-LIELIETSPSLRVLNVESN-FLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp TCSCCCEEECTTSC-CBHHHHTT-HHHHHHHCSSCCEEECCSS-BCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred hCCCcCEEEccCCC-CChHHHHH-HHHHHhcCCccCeEecCCC-cCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 44566777776665 44322221 111 01245677777665 3443221111 233345777777643
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=64.02 E-value=2.3 Score=34.15 Aligned_cols=118 Identities=13% Similarity=0.106 Sum_probs=66.6
Q ss_pred eccCccceeEeccCCCcceeccCCCCCC--CCCCCccEEEEecCCCCcccCC---chhhhcCCCCcEEEEccCCCcceee
Q 044585 65 IGFRDIEHLQLSHFPRLREIWHGQAVPV--SFFNNLRQLAVDDCTNMSSAIP---TNLLRCLNNLRCLEVRNCDLIEEVL 139 (352)
Q Consensus 65 ~~~~~L~~L~l~~~~~l~~~~~~~~l~~--~~l~~L~~L~l~~c~~l~~~~~---~~~~~~l~~L~~L~l~~~~~l~~~~ 139 (352)
.+-+.|++|+++++..+.+..... +.. ..-+.|++|+|++| .+.+... ...+..-++|++|+|++|. +.+
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~-la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~-Ig~-- 112 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRS-LIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNF-LTP-- 112 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHH-HHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCH--
T ss_pred hcCCCccEEECCCCCCCCHHHHHH-HHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCc-CCH--
Confidence 456789999999764354321110 100 12468999999998 5654332 1234566899999999865 322
Q ss_pred eeccccccccccCCCCcccCeeccccccc--ccc-----ccccCCceeeccCcceEeeccC
Q 044585 140 HLEELNAKEEHIGPRFPRLNRLRLIDLPK--LKR-----FCNFTGNIIELSELENLTIENC 193 (352)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--l~~-----~~~~~~~~~~~~~L~~L~l~~c 193 (352)
.+..+..+.+. .-..|+.|+++++.. +.. +.. .+..-+.|++|.++.+
T Consensus 113 --~Ga~ala~aL~-~N~tL~~L~L~n~~~~~ig~~g~~~ia~---aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 113 --ELLARLLRSTL-VTQSIVEFKADNQRQSVLGNQVEMDMMM---AIEENESLLRVGISFA 167 (197)
T ss_dssp --HHHHHHHHHTT-TTCCCSEEECCCCSSCCCCHHHHHHHHH---HHHHCSSCCEEECCCC
T ss_pred --HHHHHHHHHHh-hCCceeEEECCCCcCcCcCHHHHHHHHH---HHHhCCCcCeEeccCC
Confidence 12222222333 455799999976421 221 111 2333467788877543
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=30.88 E-value=73 Score=21.95 Aligned_cols=43 Identities=14% Similarity=0.024 Sum_probs=19.6
Q ss_pred cccccccccccccccCCcceEEEecCCCcccccC-CccCCCCCcEEeec
Q 044585 253 VQHLWKENDESNKAFANLKSLEIFECSKLQKLVP-ASWHLENLEALKVS 300 (352)
Q Consensus 253 l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~ 300 (352)
++.+...++ ..+.+|+.+.|-. .++.+-. .+..|.+|+.+.+.
T Consensus 8 vt~I~~~aF---~~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 8 VVGMDKSLF---AGNTVIREITVQP--NIGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CCSSCSCTT---TTCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEEC
T ss_pred cCEecHHHh---cCCCCCcEEEcCC--chheEcHHHHhccCCccEEEEc
Confidence 344444444 4455555555543 2233321 34455555555553
Done!