BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044588
         (117 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1XY7|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
           At5g48480
 pdb|1XY7|B Chain B, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
           At5g48480
 pdb|2Q48|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
           Gene Product From Arabidopsis Thaliana At5g48480
 pdb|2Q48|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
           Gene Product From Arabidopsis Thaliana At5g48480
          Length = 166

 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 55/130 (42%), Gaps = 34/130 (26%)

Query: 10  FMGMKPQLLVEESKATNVVQFYKTTSGA-----------------------QLEIAGSTF 46
           F   K  LLVE  K  + V FYK+  GA                       +L +AGS+F
Sbjct: 23  FTEFKQXLLVEAQKVGDAVTFYKSAFGAIESGHSLYPKRKLDQELPHVLSSELNLAGSSF 82

Query: 47  LVSNFSN--DSAAAKNMGIGCVLCLEIDDVEAALAKAMSGGVWAT---------GRVGKV 95
           +V + S+    + AK+ G G    L   D EAA+AKA+  G             G  GKV
Sbjct: 83  VVCDVSSLPGFSTAKSEGSGVTFLLGTKDAEAAVAKAVDAGAVKVEVTEAEVELGFKGKV 142

Query: 96  KDPCGFTWLI 105
            DP G TW+ 
Sbjct: 143 TDPFGVTWIF 152


>pdb|3OTR|A Chain A, 2.75 Angstrom Crystal Structure Of Enolase 1 From
           Toxoplasma Gondii
 pdb|3OTR|B Chain B, 2.75 Angstrom Crystal Structure Of Enolase 1 From
           Toxoplasma Gondii
 pdb|3OTR|C Chain C, 2.75 Angstrom Crystal Structure Of Enolase 1 From
           Toxoplasma Gondii
 pdb|3OTR|D Chain D, 2.75 Angstrom Crystal Structure Of Enolase 1 From
           Toxoplasma Gondii
 pdb|3OTR|E Chain E, 2.75 Angstrom Crystal Structure Of Enolase 1 From
           Toxoplasma Gondii
 pdb|3OTR|F Chain F, 2.75 Angstrom Crystal Structure Of Enolase 1 From
           Toxoplasma Gondii
          Length = 452

 Score = 25.4 bits (54), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 9/70 (12%)

Query: 36  GAQLEIAGSTFLVSNFSNDSAAAKNMGIGCVLCLEIDD-------VEAALAKAMSG-GVW 87
           G + ++ G   LV+N      A K+    C+L L+++        +EA L    SG GV 
Sbjct: 322 GEKTQVIGDDILVTNILRIEKALKDKACNCLL-LKVNQIGSVTEAIEACLLAQKSGWGVQ 380

Query: 88  ATGRVGKVKD 97
            + R G+ +D
Sbjct: 381 VSHRSGETED 390


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.130    0.386 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,178,428
Number of Sequences: 62578
Number of extensions: 103014
Number of successful extensions: 226
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 223
Number of HSP's gapped (non-prelim): 7
length of query: 117
length of database: 14,973,337
effective HSP length: 80
effective length of query: 37
effective length of database: 9,967,097
effective search space: 368782589
effective search space used: 368782589
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)