BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044588
(117 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LV66|Y5848_ARATH Uncharacterized protein At5g48480 OS=Arabidopsis thaliana
GN=At5g48480 PE=1 SV=1
Length = 166
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 55/130 (42%), Gaps = 34/130 (26%)
Query: 10 FMGMKPQLLVEESKATNVVQFYKTTSGA-----------------------QLEIAGSTF 46
F K LLVE K + V FYK+ GA +L +AGS+F
Sbjct: 23 FTEFKQMLLVEAQKVGDAVTFYKSAFGAIESGHSLYPKRKLDQELPHVLSSELNLAGSSF 82
Query: 47 LVSNFSN--DSAAAKNMGIGCVLCLEIDDVEAALAKAMSGGVWAT---------GRVGKV 95
+V + S+ + AK+ G G L D EAA+AKA+ G G GKV
Sbjct: 83 VVCDVSSLPGFSTAKSEGSGVTFLLGTKDAEAAVAKAVDAGAVKVEVTEAEVELGFKGKV 142
Query: 96 KDPCGFTWLI 105
DP G TW+
Sbjct: 143 TDPFGVTWIF 152
>sp|P64742|Y911_MYCBO Uncharacterized protein Mb0911c OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=Mb0911c PE=4 SV=1
Length = 170
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 53/130 (40%), Gaps = 31/130 (23%)
Query: 13 MKPQLLVEES--------KATNVVQFYKTTS------GAQLEIAGSTFLVSNFSNDSAAA 58
+ P L+V+++ KA + V+ + A L I G T ++++
Sbjct: 27 LSPHLVVDDAASAIDFYVKAFDAVELGRVPGPDGKLIHAALRINGFTVMLNDDVPQMCGG 86
Query: 59 KNM------GIGCVLCLEIDDVEAALAKAMSGG----------VWATGRVGKVKDPCGFT 102
K+M G + L + DV+A +A++ G +W R G V DP G
Sbjct: 87 KSMTPTSLGGTPVTIHLTVTDVDAKFQRALNAGATVVTALEDQLWGD-RYGVVADPFGHH 145
Query: 103 WLIYSPVKKC 112
W + PV++
Sbjct: 146 WSLGQPVREV 155
>sp|P64741|Y887_MYCTU Uncharacterized protein Rv0887c/MT0910 OS=Mycobacterium
tuberculosis GN=Rv0887c PE=4 SV=1
Length = 170
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 53/130 (40%), Gaps = 31/130 (23%)
Query: 13 MKPQLLVEES--------KATNVVQFYKTTS------GAQLEIAGSTFLVSNFSNDSAAA 58
+ P L+V+++ KA + V+ + A L I G T ++++
Sbjct: 27 LSPHLVVDDAASAIDFYVKAFDAVELGRVPGPDGKLIHAALRINGFTVMLNDDVPQMCGG 86
Query: 59 KNM------GIGCVLCLEIDDVEAALAKAMSGG----------VWATGRVGKVKDPCGFT 102
K+M G + L + DV+A +A++ G +W R G V DP G
Sbjct: 87 KSMTPTSLGGTPVTIHLTVTDVDAKFQRALNAGATVVTALEDQLWGD-RYGVVADPFGHH 145
Query: 103 WLIYSPVKKC 112
W + PV++
Sbjct: 146 WSLGQPVREV 155
>sp|Q3SH71|KUP_THIDA Probable potassium transport system protein kup OS=Thiobacillus
denitrificans (strain ATCC 25259) GN=kup PE=3 SV=1
Length = 624
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Query: 11 MGMKPQLLVEESKATNVVQFYKTTSGAQLEIAGSTFLVSNFSNDSAAAKNMGIGCVLCLE 70
MG P+L++ + AT Q Y L AG LV F + S A GI
Sbjct: 320 MGYAPRLVIRHTSATAAGQIYIPFVNWTLA-AGVALLVLGFQSSSNLAAAYGIAVTATFA 378
Query: 71 IDDVEAALAKAMSGGVWATGR 91
ID V AL ++ W GR
Sbjct: 379 IDTVLLALLMRVN---WNLGR 396
>sp|Q20168|COPB2_CAEEL Probable coatomer subunit beta' OS=Caenorhabditis elegans
GN=F38E11.5 PE=3 SV=3
Length = 1000
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 42 AGSTFLVSNFSNDSAAAKNMGIGCVLCLEIDDVEAALAKAMSGG 85
AGS L+ ++DSAAA++ I + L + D++A L K +S G
Sbjct: 705 AGSAPLLQKLADDSAAAESHNISFLSSLLLGDIDACLDKLISTG 748
>sp|A2A8Z1|OSBL9_MOUSE Oxysterol-binding protein-related protein 9 OS=Mus musculus
GN=Osbpl9 PE=1 SV=1
Length = 736
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 27 VVQFYKTTSGAQLEIAGSTFLVSNFSNDSAAAKNMGIGCVLCLEIDD 73
+ FY +++ + S F S N+G GCV CLE D+
Sbjct: 505 ISAFYAECFNKKIQFNAHIWTKSKFLGMSIGVHNIGQGCVSCLEYDE 551
>sp|A9BCS9|PUR5_PROM4 Phosphoribosylformylglycinamidine cyclo-ligase OS=Prochlorococcus
marinus (strain MIT 9211) GN=purM PE=3 SV=1
Length = 345
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 60 NMGIGCVLCLEIDDVEAALAKAMSGGVWATGRVGKVKDP 98
N+GIG L + D VEAAL G W +G+V++P
Sbjct: 295 NLGIGFCLVVSTDQVEAALEICTEIG-WDAWTIGRVQEP 332
>sp|A4XWN5|PUR5_PSEMY Phosphoribosylformylglycinamidine cyclo-ligase OS=Pseudomonas
mendocina (strain ymp) GN=purM PE=3 SV=1
Length = 352
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 60 NMGIGCVLCLEIDDVEAALAKAMSGG--VWATGRV 92
N G+G V+C+ D VEAALA + G W G++
Sbjct: 300 NCGVGMVICVAQDQVEAALASLRASGESPWVIGQI 334
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.130 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,429,006
Number of Sequences: 539616
Number of extensions: 1357982
Number of successful extensions: 3138
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 3131
Number of HSP's gapped (non-prelim): 29
length of query: 117
length of database: 191,569,459
effective HSP length: 84
effective length of query: 33
effective length of database: 146,241,715
effective search space: 4825976595
effective search space used: 4825976595
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)