Query 044588
Match_columns 117
No_of_seqs 178 out of 1028
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 04:48:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044588.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044588hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2764 PhnB Uncharacterized p 99.9 2.2E-22 4.9E-27 135.0 13.6 99 12-111 1-134 (136)
2 cd08355 Glo_EDI_BRP_like_14 Th 99.8 1.7E-18 3.6E-23 112.6 13.8 93 13-107 1-121 (122)
3 cd07246 Glo_EDI_BRP_like_8 Thi 99.8 3.6E-18 7.8E-23 110.2 14.0 95 12-108 2-122 (122)
4 PRK10148 hypothetical protein; 99.8 2.7E-18 5.9E-23 116.8 13.6 95 11-110 1-143 (147)
5 cd06588 PhnB_like Escherichia 99.8 1.4E-17 3.1E-22 110.1 12.3 90 13-106 1-128 (128)
6 cd08359 Glo_EDI_BRP_like_22 Th 99.7 2E-16 4.3E-21 102.1 13.0 95 11-107 1-119 (119)
7 PF06983 3-dmu-9_3-mt: 3-demet 99.7 1.9E-16 4.1E-21 103.9 11.5 90 11-106 1-116 (116)
8 cd08356 Glo_EDI_BRP_like_17 Th 99.7 3.1E-16 6.6E-21 101.5 11.2 88 12-107 2-113 (113)
9 cd09011 Glo_EDI_BRP_like_23 Th 99.7 9.8E-16 2.1E-20 99.5 12.6 95 12-108 3-119 (120)
10 cd08350 BLMT_like BLMT, a bleo 99.7 9.4E-16 2E-20 99.6 11.9 90 12-108 3-119 (120)
11 cd07264 Glo_EDI_BRP_like_15 Th 99.7 2.2E-15 4.9E-20 97.7 12.9 93 14-108 3-125 (125)
12 cd07238 Glo_EDI_BRP_like_5 Thi 99.7 3.4E-15 7.4E-20 95.6 12.2 95 12-108 1-111 (112)
13 cd08349 BLMA_like Bleomycin bi 99.6 1.1E-14 2.3E-19 92.5 12.4 90 14-107 1-112 (112)
14 COG3324 Predicted enzyme relat 99.6 3.5E-14 7.6E-19 94.2 11.8 89 21-109 17-126 (127)
15 cd07261 Glo_EDI_BRP_like_11 Th 99.6 6.5E-14 1.4E-18 89.8 12.8 90 16-107 3-114 (114)
16 cd08342 HPPD_N_like N-terminal 99.6 6.9E-14 1.5E-18 93.1 13.0 95 15-111 4-126 (136)
17 PF12681 Glyoxalase_2: Glyoxal 99.6 3.2E-14 6.9E-19 90.0 10.4 88 17-106 1-108 (108)
18 cd07235 MRD Mitomycin C resist 99.6 9.6E-14 2.1E-18 89.9 12.2 88 16-106 5-121 (122)
19 cd07247 SgaA_N_like N-terminal 99.6 2.2E-13 4.9E-18 87.1 12.9 91 15-107 4-114 (114)
20 COG3865 Uncharacterized protei 99.5 3.3E-13 7E-18 90.5 11.4 96 9-108 2-124 (151)
21 PRK11478 putative lyase; Provi 99.5 1.4E-12 3E-17 85.1 12.6 92 15-108 10-129 (129)
22 cd07263 Glo_EDI_BRP_like_16 Th 99.5 1.8E-12 3.8E-17 82.5 12.4 90 16-107 3-119 (119)
23 cd07233 Glyoxalase_I Glyoxalas 99.5 1.4E-12 3E-17 83.9 11.8 89 16-106 5-121 (121)
24 cd08357 Glo_EDI_BRP_like_18 Th 99.5 6.7E-13 1.5E-17 85.8 10.3 90 16-107 4-124 (125)
25 cd09012 Glo_EDI_BRP_like_24 Th 99.5 1.4E-12 2.9E-17 85.0 11.7 92 13-107 2-123 (124)
26 cd07245 Glo_EDI_BRP_like_9 Thi 99.5 2.1E-12 4.6E-17 81.2 11.7 87 17-105 6-114 (114)
27 cd08345 Fosfomycin_RP Fosfomyc 99.5 1.3E-12 2.7E-17 83.4 10.6 87 16-107 3-110 (113)
28 PRK10291 glyoxalase I; Provisi 99.5 2E-12 4.4E-17 84.9 11.7 93 17-111 2-123 (129)
29 cd08351 ChaP_like ChaP, an enz 99.5 1.6E-12 3.5E-17 84.7 11.1 98 9-108 2-121 (123)
30 cd08352 Glo_EDI_BRP_like_1 Thi 99.4 4.1E-12 8.9E-17 81.6 12.3 90 16-107 8-125 (125)
31 cd08354 Glo_EDI_BRP_like_13 Th 99.4 2.8E-12 6.1E-17 82.5 11.4 94 13-108 2-122 (122)
32 PRK04101 fosfomycin resistance 99.4 4.7E-12 1E-16 84.5 12.7 91 15-109 8-120 (139)
33 cd07253 Glo_EDI_BRP_like_2 Thi 99.4 6.7E-12 1.4E-16 80.6 12.7 90 16-107 8-124 (125)
34 TIGR03645 glyox_marine lactoyl 99.4 3.6E-12 7.9E-17 87.5 12.0 48 64-111 94-154 (162)
35 cd08353 Glo_EDI_BRP_like_7 Thi 99.4 5.2E-12 1.1E-16 83.9 12.0 44 65-108 89-141 (142)
36 cd07251 Glo_EDI_BRP_like_10 Th 99.4 6.4E-12 1.4E-16 80.7 11.5 90 16-107 3-120 (121)
37 cd07254 Glo_EDI_BRP_like_20 Th 99.4 2E-11 4.3E-16 78.9 13.1 96 12-109 2-118 (120)
38 TIGR03081 metmalonyl_epim meth 99.4 1.1E-11 2.3E-16 80.4 11.5 91 15-107 5-128 (128)
39 cd07244 FosA FosA, a Fosfomyci 99.4 1.2E-11 2.5E-16 80.4 11.5 89 15-109 5-111 (121)
40 PRK06724 hypothetical protein; 99.4 1.3E-11 2.7E-16 82.0 11.6 89 15-108 11-123 (128)
41 cd08363 FosB FosB, a fosfomyci 99.4 1.1E-11 2.4E-16 82.0 11.1 91 16-109 5-116 (131)
42 TIGR00068 glyox_I lactoylgluta 99.4 2.2E-11 4.7E-16 82.2 12.6 95 14-110 20-143 (150)
43 PLN02367 lactoylglutathione ly 99.4 3.7E-11 8.1E-16 87.2 14.4 46 65-110 171-224 (233)
44 cd07241 Glo_EDI_BRP_like_3 Thi 99.4 1.8E-11 3.9E-16 78.8 11.3 89 15-105 5-124 (125)
45 cd07255 Glo_EDI_BRP_like_12 Th 99.4 7.4E-11 1.6E-15 76.4 13.4 94 15-111 6-122 (125)
46 cd08361 PpCmtC_N N-terminal do 99.3 5.3E-11 1.2E-15 77.9 12.1 94 15-110 10-121 (124)
47 cd08344 MhqB_like_N N-terminal 99.3 3.2E-11 7E-16 77.4 10.7 91 16-109 7-110 (112)
48 cd08362 BphC5-RrK37_N_like N-t 99.3 4.1E-11 9E-16 77.0 11.1 93 16-110 8-119 (120)
49 PLN03042 Lactoylglutathione ly 99.3 1.2E-10 2.7E-15 82.0 14.3 45 65-109 123-175 (185)
50 cd08347 PcpA_C_like C-terminal 99.3 7.5E-11 1.6E-15 80.7 12.8 91 16-109 6-121 (157)
51 PLN02300 lactoylglutathione ly 99.3 6.4E-11 1.4E-15 87.9 13.2 96 14-111 27-151 (286)
52 cd08348 BphC2-C3-RGP6_C_like T 99.3 1.6E-10 3.4E-15 76.0 13.5 95 16-112 6-124 (134)
53 cd07252 BphC1-RGP6_N_like N-te 99.3 1.2E-10 2.6E-15 75.6 12.5 93 15-109 6-118 (120)
54 cd08343 ED_TypeI_classII_C C-t 99.3 8.9E-11 1.9E-15 77.3 11.9 94 16-111 4-120 (131)
55 cd06587 Glo_EDI_BRP_like This 99.3 1E-10 2.2E-15 72.5 11.3 87 17-105 4-112 (112)
56 cd07265 2_3_CTD_N N-terminal d 99.3 1.5E-10 3.3E-15 75.0 12.5 94 14-109 7-120 (122)
57 cd08364 FosX FosX, a fosfomyci 99.3 1.4E-10 3.1E-15 76.6 11.8 88 15-109 8-123 (131)
58 cd07266 HPCD_N_class_II N-term 99.3 1.1E-10 2.4E-15 75.3 10.9 93 15-109 8-119 (121)
59 cd08346 PcpA_N_like N-terminal 99.3 2.2E-10 4.7E-15 73.7 11.7 90 15-106 5-126 (126)
60 cd07240 ED_TypeI_classII_N N-t 99.3 2.1E-10 4.5E-15 73.3 11.4 91 16-108 7-114 (117)
61 cd07239 BphC5-RK37_C_like C-te 99.3 2.2E-10 4.7E-15 77.3 11.7 94 16-111 9-120 (144)
62 cd07262 Glo_EDI_BRP_like_19 Th 99.2 1.8E-10 3.9E-15 74.6 10.8 90 16-107 5-123 (123)
63 cd09013 BphC-JF8_N_like N-term 99.2 3.3E-10 7.1E-15 73.4 11.9 100 8-109 2-119 (121)
64 cd07267 THT_Oxygenase_N N-term 99.2 5.2E-10 1.1E-14 71.9 12.3 92 16-110 8-112 (113)
65 cd07242 Glo_EDI_BRP_like_6 Thi 99.2 7.1E-10 1.5E-14 72.1 12.6 91 16-108 6-128 (128)
66 COG3607 Predicted lactoylgluta 99.2 1.7E-10 3.7E-15 75.9 9.4 93 12-107 4-126 (133)
67 cd07249 MMCE Methylmalonyl-CoA 99.2 6.2E-10 1.3E-14 71.9 11.5 90 16-107 5-128 (128)
68 cd07257 THT_oxygenase_C The C- 99.2 4E-10 8.6E-15 76.6 11.0 93 16-110 6-127 (153)
69 cd08358 Glo_EDI_BRP_like_21 Th 99.2 9.1E-10 2E-14 73.3 12.0 91 13-107 4-126 (127)
70 cd08360 MhqB_like_C C-terminal 99.2 1.1E-09 2.5E-14 72.4 12.0 93 16-110 8-122 (134)
71 cd07237 BphC1-RGP6_C_like C-te 99.1 1.6E-09 3.4E-14 73.7 11.9 94 15-110 13-133 (154)
72 cd07258 PpCmtC_C C-terminal do 99.1 1.8E-09 3.9E-14 72.7 11.9 96 16-113 4-119 (141)
73 cd07243 2_3_CTD_C C-terminal d 99.1 1E-09 2.2E-14 73.8 10.6 92 15-108 10-125 (143)
74 PF00903 Glyoxalase: Glyoxalas 99.1 3.7E-10 8.1E-15 72.4 8.0 87 17-105 7-128 (128)
75 cd07256 HPCD_C_class_II C-term 99.1 2.1E-09 4.6E-14 73.5 11.1 93 15-109 7-124 (161)
76 PLN02300 lactoylglutathione ly 99.1 3.1E-09 6.7E-14 78.9 12.6 94 14-109 157-279 (286)
77 TIGR02295 HpaD 3,4-dihydroxyph 99.1 3.6E-09 7.7E-14 78.3 11.8 95 14-110 7-117 (294)
78 cd09014 BphC-JF8_C_like C-term 99.1 5.5E-09 1.2E-13 71.9 11.8 93 14-108 9-127 (166)
79 PRK01037 trmD tRNA (guanine-N( 99.0 5.9E-09 1.3E-13 79.3 10.0 92 10-109 246-355 (357)
80 TIGR03213 23dbph12diox 2,3-dih 99.0 1.7E-08 3.7E-13 74.7 11.9 92 15-108 7-118 (286)
81 TIGR03211 catechol_2_3 catecho 98.9 3E-08 6.6E-13 73.8 12.0 95 14-110 7-120 (303)
82 TIGR03211 catechol_2_3 catecho 98.9 4.4E-08 9.5E-13 72.9 11.7 90 16-107 150-264 (303)
83 TIGR03213 23dbph12diox 2,3-dih 98.9 7.8E-08 1.7E-12 71.1 12.0 93 15-109 146-264 (286)
84 KOG2944 Glyoxalase [Carbohydra 98.9 6.1E-08 1.3E-12 66.3 10.4 45 65-109 117-169 (170)
85 TIGR02295 HpaD 3,4-dihydroxyph 98.8 1.1E-07 2.3E-12 70.4 11.2 93 15-109 140-257 (294)
86 PF13669 Glyoxalase_4: Glyoxal 98.6 4.9E-07 1.1E-11 57.9 8.5 71 16-88 4-93 (109)
87 COG2514 Predicted ring-cleavag 98.6 6.9E-07 1.5E-11 65.8 10.0 94 15-110 14-128 (265)
88 COG3565 Predicted dioxygenase 98.5 3E-06 6.5E-11 55.4 10.5 93 16-108 7-129 (138)
89 cd07250 HPPD_C_like C-terminal 98.1 6.2E-05 1.3E-09 53.1 9.6 27 62-88 81-108 (191)
90 COG0346 GloA Lactoylglutathion 98.0 3.3E-05 7.2E-10 48.6 7.0 92 14-107 5-138 (138)
91 TIGR01263 4HPPD 4-hydroxypheny 98.0 0.00039 8.5E-09 53.2 13.2 73 14-88 5-97 (353)
92 KOG2943 Predicted glyoxalase [ 97.9 0.00014 3.1E-09 53.1 8.8 48 63-110 96-145 (299)
93 KOG2943 Predicted glyoxalase [ 97.8 0.0002 4.4E-09 52.4 8.6 93 13-108 151-270 (299)
94 TIGR01263 4HPPD 4-hydroxypheny 97.8 0.00022 4.8E-09 54.6 8.9 94 16-109 161-311 (353)
95 PF14506 CppA_N: CppA N-termin 97.5 0.0065 1.4E-07 40.0 11.8 94 13-109 2-115 (125)
96 PF15067 FAM124: FAM124 family 96.5 0.034 7.3E-07 40.6 8.7 88 14-105 133-235 (236)
97 KOG0638 4-hydroxyphenylpyruvat 96.4 0.019 4E-07 43.8 7.0 70 17-88 23-116 (381)
98 PLN02875 4-hydroxyphenylpyruva 95.8 0.07 1.5E-06 41.9 7.9 48 62-109 260-341 (398)
99 PLN02875 4-hydroxyphenylpyruva 95.4 0.69 1.5E-05 36.5 12.3 46 63-108 91-151 (398)
100 PF14507 CppA_C: CppA C-termin 95.1 0.05 1.1E-06 34.8 4.3 84 14-105 8-100 (101)
101 PF14696 Glyoxalase_5: Hydroxy 94.6 0.36 7.8E-06 32.6 7.6 89 17-109 15-127 (139)
102 COG3185 4-hydroxyphenylpyruvat 93.8 0.44 9.6E-06 36.8 7.6 27 62-88 243-270 (363)
103 COG2514 Predicted ring-cleavag 93.0 0.74 1.6E-05 34.3 7.4 30 12-41 167-196 (265)
104 PF13468 Glyoxalase_3: Glyoxal 90.6 0.53 1.2E-05 32.3 4.2 70 16-87 5-101 (175)
105 COG3185 4-hydroxyphenylpyruvat 90.5 5 0.00011 31.2 9.6 38 63-100 87-142 (363)
106 PF13669 Glyoxalase_4: Glyoxal 90.2 1 2.2E-05 28.2 5.0 47 66-112 2-59 (109)
107 PF07494 Reg_prop: Two compone 83.9 1.3 2.8E-05 20.5 2.1 14 91-104 7-20 (24)
108 KOG0638 4-hydroxyphenylpyruvat 80.3 6.2 0.00013 30.5 5.6 28 61-88 259-287 (381)
109 PF13670 PepSY_2: Peptidase pr 71.7 13 0.00029 22.2 4.6 37 73-109 30-74 (83)
110 PF13176 TPR_7: Tetratricopept 66.8 5.4 0.00012 19.9 1.8 14 22-35 13-26 (36)
111 cd04882 ACT_Bt0572_2 C-termina 57.1 30 0.00065 18.9 4.0 26 63-88 39-64 (65)
112 COG1225 Bcp Peroxiredoxin [Pos 45.4 98 0.0021 21.3 5.6 25 90-114 120-144 (157)
113 PF09142 TruB_C: tRNA Pseudour 44.7 57 0.0012 18.3 3.7 38 73-110 5-46 (56)
114 cd04883 ACT_AcuB C-terminal AC 43.7 56 0.0012 18.3 3.8 24 65-88 45-68 (72)
115 cd03017 PRX_BCP Peroxiredoxin 43.3 84 0.0018 19.9 5.5 24 91-114 111-134 (140)
116 TIGR01643 YD_repeat_2x YD repe 36.2 56 0.0012 16.4 2.7 18 91-108 17-34 (42)
117 cd04895 ACT_ACR_1 ACT domain-c 35.7 95 0.0021 18.3 3.9 28 76-103 17-55 (72)
118 cd04908 ACT_Bt0572_1 N-termina 35.6 83 0.0018 17.5 3.8 24 65-88 41-64 (66)
119 KOG2454 Betaine aldehyde dehyd 35.3 15 0.00033 29.4 0.4 34 71-104 382-418 (583)
120 KOG4657 Uncharacterized conser 34.1 1.2E+02 0.0027 22.3 4.9 20 23-42 146-165 (246)
121 smart00671 SEL1 Sel1-like repe 33.8 41 0.00088 15.9 1.8 13 22-34 19-31 (36)
122 PRK06704 RNA polymerase factor 33.8 54 0.0012 23.7 3.1 35 71-107 186-227 (228)
123 cd04906 ACT_ThrD-I_1 First of 33.7 95 0.0021 18.5 3.8 26 63-88 40-69 (85)
124 PF13351 DUF4099: Protein of u 32.9 87 0.0019 19.0 3.5 27 90-116 55-81 (85)
125 PF10706 Aminoglyc_resit: Amin 32.7 1.6E+02 0.0034 20.7 5.1 43 63-105 43-87 (174)
126 PF08379 Bact_transglu_N: Bact 32.2 70 0.0015 18.9 3.0 22 91-112 48-69 (82)
127 PRK09732 hypothetical protein; 31.7 1.5E+02 0.0032 19.7 4.8 31 75-108 17-47 (134)
128 PF11520 Cren7: Chromatin prot 31.1 49 0.0011 19.0 2.0 17 89-105 36-53 (60)
129 COG3349 Uncharacterized conser 30.1 78 0.0017 25.9 3.7 32 74-106 13-53 (485)
130 PF00515 TPR_1: Tetratricopept 30.0 51 0.0011 15.5 1.8 13 23-35 16-28 (34)
131 PHA02978 hypothetical protein; 29.4 63 0.0014 21.0 2.5 19 91-109 75-93 (135)
132 PF07045 DUF1330: Protein of u 27.9 82 0.0018 17.8 2.7 20 12-33 39-58 (65)
133 PF07719 TPR_2: Tetratricopept 27.7 59 0.0013 15.0 1.8 14 22-35 15-28 (34)
134 PF15000 TUSC2: Tumour suppres 26.5 55 0.0012 21.3 1.8 27 7-34 36-69 (111)
135 cd01205 WASP WASP-type EVH1 do 26.3 73 0.0016 20.4 2.4 20 14-35 83-102 (105)
136 KOG1651 Glutathione peroxidase 26.0 84 0.0018 22.0 2.8 45 72-116 112-162 (171)
137 PRK09437 bcp thioredoxin-depen 25.8 1.9E+02 0.0042 18.7 5.2 20 91-110 121-140 (154)
138 PF02208 Sorb: Sorbin homologo 25.6 24 0.00051 19.3 0.0 14 23-36 21-34 (47)
139 PF13181 TPR_8: Tetratricopept 25.4 73 0.0016 14.8 1.9 14 22-35 15-28 (34)
140 COG4747 ACT domain-containing 24.2 1E+02 0.0023 20.5 2.9 26 63-88 108-133 (142)
141 PF08238 Sel1: Sel1 repeat; I 23.3 51 0.0011 15.9 1.1 12 23-34 23-34 (39)
142 COG1167 ARO8 Transcriptional r 23.1 1.7E+02 0.0038 23.3 4.5 45 63-107 385-434 (459)
143 PF13549 ATP-grasp_5: ATP-gras 22.8 1.5E+02 0.0033 21.3 3.8 84 13-108 26-132 (222)
144 PF13374 TPR_10: Tetratricopep 22.7 80 0.0017 15.1 1.8 15 22-36 16-30 (42)
145 KOG1249 Predicted GTPases [Gen 22.5 59 0.0013 27.0 1.7 27 14-40 433-459 (572)
146 PF11320 DUF3122: Protein of u 22.3 70 0.0015 21.5 1.8 19 91-109 17-35 (134)
147 PF11823 DUF3343: Protein of u 22.1 1.4E+02 0.003 17.3 3.0 62 16-88 5-66 (73)
148 PF09162 Tap-RNA_bind: Tap, RN 22.0 2.1E+02 0.0045 17.7 3.9 36 66-109 46-81 (88)
149 COG2605 Predicted kinase relat 21.8 1E+02 0.0023 23.8 2.8 20 69-88 263-282 (333)
150 TIGR02540 gpx7 putative glutat 21.7 77 0.0017 20.8 2.0 24 89-112 119-142 (153)
151 PF07864 DUF1651: Protein of u 21.5 1.3E+02 0.0028 17.6 2.8 22 93-114 2-23 (75)
152 PF04761 Phage_Treg: Lactococc 21.1 74 0.0016 17.7 1.4 13 24-36 15-27 (57)
153 COG4007 Predicted dehydrogenas 20.5 81 0.0018 24.1 2.0 33 75-107 59-101 (340)
154 PHA00450 host dGTPase inhibito 20.1 2.3E+02 0.0049 17.4 4.1 37 73-109 11-59 (85)
155 PF15533 Toxin_54: Putative to 20.0 1.8E+02 0.0038 17.1 3.0 19 89-107 34-52 (66)
No 1
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.90 E-value=2.2e-22 Score=134.99 Aligned_cols=99 Identities=33% Similarity=0.591 Sum_probs=82.1
Q ss_pred ceeEEEEecCCCHHHHHHHHHhhhC--------------------------eEEEEcCeEEEEecCCCCCccccCCCcce
Q 044588 12 GMKPQLLVEESKATNVVQFYKTTSG--------------------------AQLEIAGSTFLVSNFSNDSAAAKNMGIGC 65 (117)
Q Consensus 12 ~~~p~L~v~~~D~~~a~~FY~~~fG--------------------------~~l~~~~~~l~~~~~~~~g~~~~~~~~~~ 65 (117)
.++|||.+++ |+++|++||+++|| ++|+++|..||++|..+........+.+.
T Consensus 1 ~l~PYl~f~g-n~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~g~~im~sd~~~~~~~~~~~~~s~ 79 (136)
T COG2764 1 TLSPYLFFNG-NAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIGGSTIMLSDAFPDMGATEGGGTSL 79 (136)
T ss_pred CcceEEEECC-CHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEECCEEEEEecCCCccCcccCCCeeE
Confidence 4789999984 99999999999999 46677788888888766222112223667
Q ss_pred EEEEEeCCHHHHHHHHHhCCCee---------eceEEEEECCCCCeEEEecccCC
Q 044588 66 VLCLEIDDVEAALAKAMSGGVWA---------TGRVGKVKDPCGFTWLIYSPVKK 111 (117)
Q Consensus 66 ~l~l~v~dvd~~~~~~~~~G~~v---------g~r~~~v~DP~G~~w~l~~~~~~ 111 (117)
+|++.++|+|+.|+||.++|+++ |.|++.|+||||+.|+|+++.+.
T Consensus 80 ~l~~~~~d~da~f~~a~~aGa~v~mpl~~~fwG~r~G~v~D~fGv~W~l~~~~~~ 134 (136)
T COG2764 80 SLDLYVEDVDAVFERAAAAGATVVMPLEDTFWGDRYGQVTDPFGVVWMLNTPVES 134 (136)
T ss_pred EEEEEehHHHHHHHHHHhcCCeEEecchhcCcccceEEEECCCCCEEEEecCccC
Confidence 88889999999999999999888 89999999999999999988764
No 2
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.81 E-value=1.7e-18 Score=112.58 Aligned_cols=93 Identities=19% Similarity=0.253 Sum_probs=69.7
Q ss_pred eeEEEEecCCCHHHHHHHHHhhhCeEE----------------EEcCeEEEEecCCCCCcc---ccCCCcceEEEEEeCC
Q 044588 13 MKPQLLVEESKATNVVQFYKTTSGAQL----------------EIAGSTFLVSNFSNDSAA---AKNMGIGCVLCLEIDD 73 (117)
Q Consensus 13 ~~p~L~v~~~D~~~a~~FY~~~fG~~l----------------~~~~~~l~~~~~~~~g~~---~~~~~~~~~l~l~v~d 73 (117)
++|+|.|+ |+++|++||+++||.+. .+++..+++......... ....+.+.+++|.|+|
T Consensus 1 ~~p~l~v~--d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~d 78 (122)
T cd08355 1 VWPTLRYR--DAAAAIDWLTDAFGFEERLVVPDDDGGVAHAELRFGDGGVMVGSVRDDYRASSARAGGAGTQGVYVVVDD 78 (122)
T ss_pred CeEEEEEC--CHHHHHHHHHHhcCCEEEEEEeCCCCcEEEEEEEECCEEEEEecCCCcccccccccCCCceEEEEEEECC
Confidence 57999999 99999999999999433 223333444332211110 1122367899999999
Q ss_pred HHHHHHHHHhCCCee---------eceEEEEECCCCCeEEEec
Q 044588 74 VEAALAKAMSGGVWA---------TGRVGKVKDPCGFTWLIYS 107 (117)
Q Consensus 74 vd~~~~~~~~~G~~v---------g~r~~~v~DP~G~~w~l~~ 107 (117)
+|+++++++++|+++ |.+.++++||+||.|+|++
T Consensus 79 ~d~~~~~l~~~G~~v~~~~~~~~~g~~~~~~~DPdG~~~~l~~ 121 (122)
T cd08355 79 VDAHYERARAAGAEILREPTDTPYGSREFTARDPEGNLWTFGT 121 (122)
T ss_pred HHHHHHHHHHCCCEEeeCccccCCCcEEEEEECCCCCEEEEec
Confidence 999999999999987 6688999999999999974
No 3
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.80 E-value=3.6e-18 Score=110.18 Aligned_cols=95 Identities=31% Similarity=0.525 Sum_probs=73.3
Q ss_pred ceeEEEEecCCCHHHHHHHHHhhhCeEE----------------EEcCeEEEEecCCCC-CccccCCCcceEEEEEeCCH
Q 044588 12 GMKPQLLVEESKATNVVQFYKTTSGAQL----------------EIAGSTFLVSNFSND-SAAAKNMGIGCVLCLEIDDV 74 (117)
Q Consensus 12 ~~~p~L~v~~~D~~~a~~FY~~~fG~~l----------------~~~~~~l~~~~~~~~-g~~~~~~~~~~~l~l~v~dv 74 (117)
++.|+|.|+ |++++.+||+++||.+. ..++..+++.+..+. +.+....++.++++|.|+|+
T Consensus 2 ~~~~~l~v~--d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~d~ 79 (122)
T cd07246 2 TVTPYLIVR--DAAAAIDFYKKAFGAEELERMPDDDGRVMHAELRIGDSVLMLADEFPEHGSPASWGGTPVSLHLYVEDV 79 (122)
T ss_pred ceeEEEEEC--CHHHHHHHHHHhhCCEEEEEEeCCCCCEEEEEEEECCEEEEEecCCcccCCCCCCCCceEEEEEEeCCH
Confidence 578999999 99999999999999332 234445555543221 11112233678999999999
Q ss_pred HHHHHHHHhCCCee---------eceEEEEECCCCCeEEEecc
Q 044588 75 EAALAKAMSGGVWA---------TGRVGKVKDPCGFTWLIYSP 108 (117)
Q Consensus 75 d~~~~~~~~~G~~v---------g~r~~~v~DP~G~~w~l~~~ 108 (117)
+++++++++.|+++ |.|.++++||+||.|+|++.
T Consensus 80 ~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~G~~~~l~~~ 122 (122)
T cd07246 80 DATFARAVAAGATSVMPPADQFWGDRYGGVRDPFGHRWWIATH 122 (122)
T ss_pred HHHHHHHHHCCCeEecCcccccccceEEEEECCCCCEEEEecC
Confidence 99999999999987 67899999999999999863
No 4
>PRK10148 hypothetical protein; Provisional
Probab=99.80 E-value=2.7e-18 Score=116.84 Aligned_cols=95 Identities=29% Similarity=0.450 Sum_probs=69.5
Q ss_pred cceeEEEEecCCCHHHHHHHHHhhhCeEEE------------------------------------EcCeEEEEecCCCC
Q 044588 11 MGMKPQLLVEESKATNVVQFYKTTSGAQLE------------------------------------IAGSTFLVSNFSND 54 (117)
Q Consensus 11 ~~~~p~L~v~~~D~~~a~~FY~~~fG~~l~------------------------------------~~~~~l~~~~~~~~ 54 (117)
|+++|||.++ +|+++|++||+++||+++. +++..||++|..+
T Consensus 1 m~l~pyL~f~-g~a~eAi~FY~~~Fgae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ha~l~i~g~~lm~sD~~~- 78 (147)
T PRK10148 1 MPLSPYLSFA-GNCADAIAYYQQTLGAELLYKISFGEMPKSAQDSEEGCPSGMQFPDTAIAHANVRIAGSDIMMSDAIP- 78 (147)
T ss_pred CeeEEEEEeC-CCHHHHHHHHHHHhCCEEEEEEEcccCCccccccccCCCccccCcCCcEEEEEEEECCEEEEEECCCC-
Confidence 4689999996 3899999999999994431 2233345554322
Q ss_pred CccccCCCcceEEEEEeCCHHH---HHHHHHhCCCee---------eceEEEEECCCCCeEEEecccC
Q 044588 55 SAAAKNMGIGCVLCLEIDDVEA---ALAKAMSGGVWA---------TGRVGKVKDPCGFTWLIYSPVK 110 (117)
Q Consensus 55 g~~~~~~~~~~~l~l~v~dvd~---~~~~~~~~G~~v---------g~r~~~v~DP~G~~w~l~~~~~ 110 (117)
+. ...+++++|+|.++|+++ +|+ ++++|+++ |.||++|+||||+.|+|.....
T Consensus 79 ~~--~~~~~~~~l~l~~~d~ee~~~~~~-aLa~gg~v~mpl~~~~wg~~~g~v~D~fGi~W~l~~~~~ 143 (147)
T PRK10148 79 SG--KAHYSGFTLVLDTQDVEEGKRWFD-NLAANGKIEMAWQETFWAHGFGKVTDKFGVPWMINVVKQ 143 (147)
T ss_pred Cc--CCCCCeEEEEEECCCHHHHHHHHH-HhhCCCEEEecchhcchhhccEEEECCCCCEEEEEecCC
Confidence 11 112257899999998876 556 45788887 7899999999999999988643
No 5
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=99.77 E-value=1.4e-17 Score=110.07 Aligned_cols=90 Identities=24% Similarity=0.424 Sum_probs=66.7
Q ss_pred eeEEEEecCCCHHHHHHHHHhhhCeE--------------------------EEEcCeEEEEecCCCCCccccCCCcceE
Q 044588 13 MKPQLLVEESKATNVVQFYKTTSGAQ--------------------------LEIAGSTFLVSNFSNDSAAAKNMGIGCV 66 (117)
Q Consensus 13 ~~p~L~v~~~D~~~a~~FY~~~fG~~--------------------------l~~~~~~l~~~~~~~~g~~~~~~~~~~~ 66 (117)
++|||.++ +|+++|++||+++||.+ +++++..|++.+..+ +... ..+++++
T Consensus 1 l~p~L~~~-~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~g~~l~~~d~~~-~~~~-~~~~~~~ 77 (128)
T cd06588 1 ITPYLWFN-GNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIGGQRLMASDGGP-GFPF-TFGNGIS 77 (128)
T ss_pred CeeEEeeC-CCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEECCEEEEEEcCCC-CCCC-CCCCCEE
Confidence 57999994 29999999999999922 334455677766543 1111 2336789
Q ss_pred EEEEeCC---HHHHHHHHHhCCCee---------eceEEEEECCCCCeEEEe
Q 044588 67 LCLEIDD---VEAALAKAMSGGVWA---------TGRVGKVKDPCGFTWLIY 106 (117)
Q Consensus 67 l~l~v~d---vd~~~~~~~~~G~~v---------g~r~~~v~DP~G~~w~l~ 106 (117)
+++.|+| ++++|+++.+ |+++ |.|+++|+||+|+.|+|.
T Consensus 78 l~i~~~~~e~v~~~~~~l~~-~g~~~~~~~~~~~g~~~~~v~Dp~G~~W~i~ 128 (128)
T cd06588 78 LSVECDSEEEADRLFEALSE-GGTVLMPLQKTFWSPLFGWVTDRFGVSWQIN 128 (128)
T ss_pred EEEECCCHHHHHHHHHHHhc-CCeEeccchhcCcccccEEEECCCCCEEEeC
Confidence 9999886 6788998665 5566 779999999999999984
No 6
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.73 E-value=2e-16 Score=102.13 Aligned_cols=95 Identities=20% Similarity=0.288 Sum_probs=70.4
Q ss_pred cceeEEEEecCCCHHHHHHHHHhhhCeEEEEc----------Ce--EEEEecCCCCCc---cccCCCcceEEEEEeCCHH
Q 044588 11 MGMKPQLLVEESKATNVVQFYKTTSGAQLEIA----------GS--TFLVSNFSNDSA---AAKNMGIGCVLCLEIDDVE 75 (117)
Q Consensus 11 ~~~~p~L~v~~~D~~~a~~FY~~~fG~~l~~~----------~~--~l~~~~~~~~g~---~~~~~~~~~~l~l~v~dvd 75 (117)
+++.|.|.++ |+++|.+||+++||++.... +. .+.+........ .....+.+++++|.|+|++
T Consensus 1 ~~~~~~l~v~--D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~v~did 78 (119)
T cd08359 1 TSLYPVIVTD--DLAETADFYVRHFGFTVVFDSDWYVSLRSPDGGVELAFMLPGHETVPAAQYQFQGQGLILNFEVDDVD 78 (119)
T ss_pred CcceeEEEEC--CHHHHHHHHHHhhCcEEEeccCcEEEEecCCCceEEEEccCCCCCCcchhcccCCceEEEEEEECCHH
Confidence 4688999999 99999999999999654432 22 222222111111 1112346789999999999
Q ss_pred HHHHHHHhCCCee---------eceEEEEECCCCCeEEEec
Q 044588 76 AALAKAMSGGVWA---------TGRVGKVKDPCGFTWLIYS 107 (117)
Q Consensus 76 ~~~~~~~~~G~~v---------g~r~~~v~DP~G~~w~l~~ 107 (117)
++++++.++|+++ |.|.++++||+||.|+|.+
T Consensus 79 ~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~G~~ie~~~ 119 (119)
T cd08359 79 AEYERLKAEGLPIVLPLRDEPWGQRHFIVRDPNGVLIDIVQ 119 (119)
T ss_pred HHHHHHHhcCCCeeeccccCCCcceEEEEECCCCCEEEEEC
Confidence 9999999999976 5688999999999999975
No 7
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=99.72 E-value=1.9e-16 Score=103.90 Aligned_cols=90 Identities=31% Similarity=0.508 Sum_probs=66.6
Q ss_pred cceeEEEEecCCCHHHHHHHHHhhhC-----------------------eEEEEcCeEEEEecCCCCCccccCCCcceEE
Q 044588 11 MGMKPQLLVEESKATNVVQFYKTTSG-----------------------AQLEIAGSTFLVSNFSNDSAAAKNMGIGCVL 67 (117)
Q Consensus 11 ~~~~p~L~v~~~D~~~a~~FY~~~fG-----------------------~~l~~~~~~l~~~~~~~~g~~~~~~~~~~~l 67 (117)
.+++|||.++ +++++|++||+++|| ++|+++|..+|.+|..+ ....+++++|
T Consensus 1 qki~pyL~F~-g~a~eA~~fY~~vf~~~~i~~~~~~~~~~~~~~~~v~ha~l~i~g~~lm~~D~~~----~~~~~~~~sl 75 (116)
T PF06983_consen 1 QKITPYLWFN-GNAEEALEFYKEVFGGSEIMTFGDYPDDEPEWKDKVMHAELTIGGQKLMASDGGP----DFPFGNNISL 75 (116)
T ss_dssp -SEEEEEEES-S-HHHHHHHHHHHSTTEEEEEEEE-TTTCTTHTTSEEEEEEEETTEEEEEEEEST----S----TTEEE
T ss_pred CceEEEEEeC-CCHHHHHHHHHHHcCCCEEEEEeECCCCCCCCCCcEEEEEEEECCeEEEEECCCC----CCCCCCcEEE
Confidence 3789999998 489999999999999 46777788888887632 1223478999
Q ss_pred EEEeCCH---HHHHHHHHhCCCeeeceEEEEECCCCCeEEEe
Q 044588 68 CLEIDDV---EAALAKAMSGGVWATGRVGKVKDPCGFTWLIY 106 (117)
Q Consensus 68 ~l~v~dv---d~~~~~~~~~G~~vg~r~~~v~DP~G~~w~l~ 106 (117)
+|.++|. +++|++|.+.| +-..+||+|+|+||+.|+|.
T Consensus 76 ~i~~~~~ee~~~~f~~Ls~gG-~~~~~~G~v~DkFGv~Wqiv 116 (116)
T PF06983_consen 76 CIECDDEEEIDRIFDKLSEGG-QWFSRYGWVTDKFGVSWQIV 116 (116)
T ss_dssp EEEESSHHHHHHHHHHHHTTT-ETCCEEEEEE-TTS-EEEEE
T ss_pred EEEcCCHHHHHHHHHHHHcCC-CccceeEEEEeCCCCEEEeC
Confidence 9999855 56799876654 44349999999999999985
No 8
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.70 E-value=3.1e-16 Score=101.54 Aligned_cols=88 Identities=25% Similarity=0.422 Sum_probs=66.6
Q ss_pred ceeEEEEecCCCHHHHHHHHHhhhCeEE----------EEcCeEEEEecCCCCCccccCCCcceEEEEEeCCHHHHHHHH
Q 044588 12 GMKPQLLVEESKATNVVQFYKTTSGAQL----------EIAGSTFLVSNFSNDSAAAKNMGIGCVLCLEIDDVEAALAKA 81 (117)
Q Consensus 12 ~~~p~L~v~~~D~~~a~~FY~~~fG~~l----------~~~~~~l~~~~~~~~g~~~~~~~~~~~l~l~v~dvd~~~~~~ 81 (117)
.+.|+|.+. |++++++||++ ||.++ ..++..+++..... . ....+..++|.|+|++++++++
T Consensus 2 ~~~~~l~v~--Dl~~s~~FY~~-LGf~~~~~~~~~~~l~~~~~~l~l~~~~~--~---~~~~~~~~~~~v~did~~~~~l 73 (113)
T cd08356 2 SIRPFIPAK--DFAESKQFYQA-LGFELEWENDNLAYFRLGNCAFYLQDYYV--K---DWAENSMLHLEVDDLEAYYEHI 73 (113)
T ss_pred cceeccccc--cHHHHHHHHHH-hCCeeEecCCCEEEEEcCCEEEEeecCCC--c---ccccCCEEEEEECCHHHHHHHH
Confidence 578999999 99999999988 89433 33344444433211 1 1114568899999999999999
Q ss_pred HhCCCee--------------eceEEEEECCCCCeEEEec
Q 044588 82 MSGGVWA--------------TGRVGKVKDPCGFTWLIYS 107 (117)
Q Consensus 82 ~~~G~~v--------------g~r~~~v~DP~G~~w~l~~ 107 (117)
+++|+++ |.|.++++||+||.|+|.+
T Consensus 74 ~~~G~~~~~~~~~~~~~~~~~g~r~f~~~DPdGn~~~~~~ 113 (113)
T cd08356 74 KALGLPKKFPGVKLPPITQPWWGREFFLHDPSGVLWHIGQ 113 (113)
T ss_pred HHcCCcccccceecCccccCCCcEEEEEECCCccEEEeeC
Confidence 9999641 7799999999999999974
No 9
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.69 E-value=9.8e-16 Score=99.45 Aligned_cols=95 Identities=19% Similarity=0.140 Sum_probs=67.9
Q ss_pred ceeEEEEecCCCHHHHHHHHHhhhCeEEEEc-CeEEE------EecCC----CC-CccccCCCcceEEEEEeCCHHHHHH
Q 044588 12 GMKPQLLVEESKATNVVQFYKTTSGAQLEIA-GSTFL------VSNFS----ND-SAAAKNMGIGCVLCLEIDDVEAALA 79 (117)
Q Consensus 12 ~~~p~L~v~~~D~~~a~~FY~~~fG~~l~~~-~~~l~------~~~~~----~~-g~~~~~~~~~~~l~l~v~dvd~~~~ 79 (117)
...|.|.|+ |+++|++||+++||.+.... +.... +.... .. ..+....+.+.+++|.|+|+|++++
T Consensus 3 ~~~~~l~v~--D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~v~dvd~~~~ 80 (120)
T cd09011 3 FKNPLLVVK--DIEKSKKFYEKVLGLKVVMDFGENVTFEGGFALQEGYSWLEGISKADIIEKSNNFELYFEEEDFDAFLD 80 (120)
T ss_pred EEEEEEEEC--CHHHHHHHHHHhcCCEEeeccCceEEEeccceeccchhhhccCCcccccccCCceEEEEEehhhHHHHH
Confidence 346888998 99999999999999665432 11111 11000 00 0111122356899999999999999
Q ss_pred HHHhCCC-ee---------eceEEEEECCCCCeEEEecc
Q 044588 80 KAMSGGV-WA---------TGRVGKVKDPCGFTWLIYSP 108 (117)
Q Consensus 80 ~~~~~G~-~v---------g~r~~~v~DP~G~~w~l~~~ 108 (117)
+++++|+ ++ |.|.++++||+||.|+|.++
T Consensus 81 ~l~~~g~~~~~~~~~~~~~g~r~~~~~DPdGn~iei~~~ 119 (120)
T cd09011 81 KLKRYDNIEYVHPIKEHPWGQRVVRFYDPDKHIIEVGES 119 (120)
T ss_pred HHHhcCCcEEecCcccCCCccEEEEEECCCCCEEEEecc
Confidence 9999986 44 67899999999999999875
No 10
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.69 E-value=9.4e-16 Score=99.63 Aligned_cols=90 Identities=19% Similarity=0.140 Sum_probs=67.6
Q ss_pred ceeEEEEecCCCHHHHHHHHHhhhCeEEEEc-----------CeEEEEecCCCCCccccCCCcceEEEEEeCCHHHHHHH
Q 044588 12 GMKPQLLVEESKATNVVQFYKTTSGAQLEIA-----------GSTFLVSNFSNDSAAAKNMGIGCVLCLEIDDVEAALAK 80 (117)
Q Consensus 12 ~~~p~L~v~~~D~~~a~~FY~~~fG~~l~~~-----------~~~l~~~~~~~~g~~~~~~~~~~~l~l~v~dvd~~~~~ 80 (117)
+++|.|.++ |+++|++||++ ||.++... +..+++.... . ..+.....++++.|+|+++.+++
T Consensus 3 ~~~~~l~v~--Dl~~s~~FY~~-lG~~~~~~~~~~~~~~~~~~~~l~l~~~~--~--~~~~~~~~~~~~~v~dvd~~~~~ 75 (120)
T cd08350 3 TTIPNLPSR--DLDATEAFYAR-LGFSVGYRQAAGYMILRRGDLELHFFAHP--D--LDPATSPFGCCLRLPDVAALHAE 75 (120)
T ss_pred cccceeEcC--CHHHHHHHHHH-cCCEEEecCCCCEEEEEcCCEEEEEEecC--c--CCCCCCcceEEEEeCCHHHHHHH
Confidence 678999999 99999999999 99554432 2223332211 0 11112456889999999999999
Q ss_pred HHhCCCe--------e--------eceEEEEECCCCCeEEEecc
Q 044588 81 AMSGGVW--------A--------TGRVGKVKDPCGFTWLIYSP 108 (117)
Q Consensus 81 ~~~~G~~--------v--------g~r~~~v~DP~G~~w~l~~~ 108 (117)
+.++|++ + |.|.++++||+||.|+|.++
T Consensus 76 l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~~~DPdG~~ie~~~~ 119 (120)
T cd08350 76 FRAAGLPETGSGIPRITPPEDQPWGMREFALVDPDGNLLRFGQP 119 (120)
T ss_pred HHHhCccccccCCCcccCCcCCCCceeEEEEECCCCCEEEeecC
Confidence 9999986 2 56889999999999999875
No 11
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.68 E-value=2.2e-15 Score=97.67 Aligned_cols=93 Identities=25% Similarity=0.340 Sum_probs=66.7
Q ss_pred eEEEEecCCCHHHHHHHHHhhhCeEEEE------------cCeEEEEecCCC------CCc--c-ccCCCcceEEEEEeC
Q 044588 14 KPQLLVEESKATNVVQFYKTTSGAQLEI------------AGSTFLVSNFSN------DSA--A-AKNMGIGCVLCLEID 72 (117)
Q Consensus 14 ~p~L~v~~~D~~~a~~FY~~~fG~~l~~------------~~~~l~~~~~~~------~g~--~-~~~~~~~~~l~l~v~ 72 (117)
...|.|+ |++++.+||+++||.+... ++..+.+..... .+. . ....+.+++++|.|+
T Consensus 3 ~~~l~v~--D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 80 (125)
T cd07264 3 YTIIYVE--DVEKTLEFYERAFGFERRFLHESGDYGELETGETTLAFASHDLAESNLKGGFVKADPAQPPAGFEIAFVTD 80 (125)
T ss_pred eEEEEEc--CHHHHHHHHHHhhCCeEEeecCCCcEEEecCCcEEEEEEcccccccccccCccCCccccCCCcEEEEEEcC
Confidence 4567777 9999999999999965432 122233322110 010 0 111235689999999
Q ss_pred CHHHHHHHHHhCCCee---------eceEEEEECCCCCeEEEecc
Q 044588 73 DVEAALAKAMSGGVWA---------TGRVGKVKDPCGFTWLIYSP 108 (117)
Q Consensus 73 dvd~~~~~~~~~G~~v---------g~r~~~v~DP~G~~w~l~~~ 108 (117)
|+++++++++++|+++ |.+.++++||+||.|+|.++
T Consensus 81 di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~~~~~~~ 125 (125)
T cd07264 81 DVAAAFARAVEAGAVLVSEPKEKPWGQTVAYVRDINGFLIELCSP 125 (125)
T ss_pred CHHHHHHHHHHcCCEeccCCccCCCCcEEEEEECCCCCEEEEecC
Confidence 9999999999999977 56789999999999999875
No 12
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.66 E-value=3.4e-15 Score=95.59 Aligned_cols=95 Identities=25% Similarity=0.283 Sum_probs=69.2
Q ss_pred ceeEEEEecCCCHHHHHHHHHhhhCeEEEEcCeEEE-Eec-CC-CC--Cc-c-ccCCCcceEEEEEeCCHHHHHHHHHhC
Q 044588 12 GMKPQLLVEESKATNVVQFYKTTSGAQLEIAGSTFL-VSN-FS-ND--SA-A-AKNMGIGCVLCLEIDDVEAALAKAMSG 84 (117)
Q Consensus 12 ~~~p~L~v~~~D~~~a~~FY~~~fG~~l~~~~~~l~-~~~-~~-~~--g~-~-~~~~~~~~~l~l~v~dvd~~~~~~~~~ 84 (117)
++.|.|.++ |++++++||+++||.++......+. +.. .. .. .. . ........++++.|+|+++++++++++
T Consensus 1 ~~~~~l~v~--Dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~d~~~~~~~l~~~ 78 (112)
T cd07238 1 RIVPNLPVA--DPEAAAAFYADVLGLDVVMDHGWIATFASPQNMTVQVSLATEGGTATVVPDLSIEVDDVDAALARAVAA 78 (112)
T ss_pred CccceEecC--CHHHHHHHHHHhcCceEEEcCCceEEEeecCCCCcEEEEecCCCCCCCCCEEEEEeCCHHHHHHHHHhc
Confidence 467999999 9999999999999977654432222 211 10 00 00 0 011113468999999999999999999
Q ss_pred CCee---------eceEEEEECCCCCeEEEecc
Q 044588 85 GVWA---------TGRVGKVKDPCGFTWLIYSP 108 (117)
Q Consensus 85 G~~v---------g~r~~~v~DP~G~~w~l~~~ 108 (117)
|+++ |.+.++++||+||.|+|+++
T Consensus 79 G~~~~~~~~~~~~g~~~~~~~DP~Gn~i~~~~~ 111 (112)
T cd07238 79 GFAIVYGPTDEPWGVRRFFVRDPFGKLVNILTH 111 (112)
T ss_pred CCeEecCCccCCCceEEEEEECCCCCEEEEEEc
Confidence 9987 45788999999999999975
No 13
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.64 E-value=1.1e-14 Score=92.55 Aligned_cols=90 Identities=23% Similarity=0.342 Sum_probs=66.2
Q ss_pred eEEEEecCCCHHHHHHHHHhhhCeEEEEc------------CeEEEEecCCCCCccccCCCcceEEEEEeCCHHHHHHHH
Q 044588 14 KPQLLVEESKATNVVQFYKTTSGAQLEIA------------GSTFLVSNFSNDSAAAKNMGIGCVLCLEIDDVEAALAKA 81 (117)
Q Consensus 14 ~p~L~v~~~D~~~a~~FY~~~fG~~l~~~------------~~~l~~~~~~~~g~~~~~~~~~~~l~l~v~dvd~~~~~~ 81 (117)
+|.|.++ |++++++||+++||+++... +..+.+.... +........++++++.++|++++++++
T Consensus 1 ~~~i~v~--d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l 76 (112)
T cd08349 1 VPVLPVS--DIERSLAFYRDVLGFEVDWEHPEPGYAFLSRGGAQLMLSEHD--GDEPVPLGRGGSVYIEVEDVDALYAEL 76 (112)
T ss_pred CCEEEEC--CHHHHHHHHHhccCeEEEEEcCCCcEEEEEeCCEEEEEeccC--CCCCCCCCCcEEEEEEeCCHHHHHHHH
Confidence 4789999 99999999999999554322 2223322211 111101236678999999999999999
Q ss_pred HhCCCe-e---------eceEEEEECCCCCeEEEec
Q 044588 82 MSGGVW-A---------TGRVGKVKDPCGFTWLIYS 107 (117)
Q Consensus 82 ~~~G~~-v---------g~r~~~v~DP~G~~w~l~~ 107 (117)
.++|++ + |.+..+++||+|+.|+|++
T Consensus 77 ~~~G~~~~~~~~~~~~~g~~~~~~~DP~G~~ie~~~ 112 (112)
T cd08349 77 KAKGADLIVYPPEDQPWGMREFAVRDPDGNLLRFGE 112 (112)
T ss_pred HHcCCcceecCccCCCcccEEEEEECCCCCEEEecC
Confidence 999998 3 4588899999999999975
No 14
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=99.60 E-value=3.5e-14 Score=94.22 Aligned_cols=89 Identities=24% Similarity=0.368 Sum_probs=67.4
Q ss_pred CCCHHHHHHHHHhhhCeEEEEc----CeEEEEe-cCCC--CCc----cccCC-CcceEEEEEeCCHHHHHHHHHhCCCee
Q 044588 21 ESKATNVVQFYKTTSGAQLEIA----GSTFLVS-NFSN--DSA----AAKNM-GIGCVLCLEIDDVEAALAKAMSGGVWA 88 (117)
Q Consensus 21 ~~D~~~a~~FY~~~fG~~l~~~----~~~l~~~-~~~~--~g~----~~~~~-~~~~~l~l~v~dvd~~~~~~~~~G~~v 88 (117)
++|+++|++||+++||+.+.-. +.....+ ...+ .|. +...+ ++++.++|.|+|+|++.+|+.++|++|
T Consensus 17 ~~D~~ra~~FY~~vFgW~~~~~~~~~~~~y~~f~~~~~~~gG~l~~~~~~~p~~~~~~iy~~v~did~~l~rv~~~GG~V 96 (127)
T COG3324 17 VSDLERAKAFYEKVFGWTFEDYFDMGEMRYAVFPADGAGAGGGLMARPGSPPGGGGWVIYFAVDDIDATLERVVAAGGKV 96 (127)
T ss_pred cCCHHHHHHHHHHhhCceecccccCCCceEEEEECCCccccceeccCCcCCCCCCCEEEEEecCChHHHHHHHHhcCCeE
Confidence 3499999999999999877533 2333332 1111 111 11122 578999999999999999999999988
Q ss_pred ---------eceEEEEECCCCCeEEEeccc
Q 044588 89 ---------TGRVGKVKDPCGFTWLIYSPV 109 (117)
Q Consensus 89 ---------g~r~~~v~DP~G~~w~l~~~~ 109 (117)
++|++.+.||.||.+.|+++.
T Consensus 97 ~~p~~~~p~~G~~a~~~Dp~Gn~~~l~s~~ 126 (127)
T COG3324 97 LRPKTEFPGGGRIAHFVDPEGNRFGLWSPA 126 (127)
T ss_pred EecccccCCceEEEEEECCCCCEEEEeecC
Confidence 579999999999999999864
No 15
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.59 E-value=6.5e-14 Score=89.75 Aligned_cols=90 Identities=24% Similarity=0.303 Sum_probs=62.6
Q ss_pred EEEecCCCHHHHHHHHHhhhCeEEE----------Ec-CeEEEEecCCCCCccccCCCcceEEEEEeCC---HHHHHHHH
Q 044588 16 QLLVEESKATNVVQFYKTTSGAQLE----------IA-GSTFLVSNFSNDSAAAKNMGIGCVLCLEIDD---VEAALAKA 81 (117)
Q Consensus 16 ~L~v~~~D~~~a~~FY~~~fG~~l~----------~~-~~~l~~~~~~~~g~~~~~~~~~~~l~l~v~d---vd~~~~~~ 81 (117)
.|.|+ |.++|++||+++||.++. .. +..+.+.............+.+.+++|.+++ ++++++++
T Consensus 3 ~l~v~--d~~~a~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 80 (114)
T cd07261 3 LLYVE--DPAASAEFYSELLGREPVELSPTFALFVLGSGVKLGLWSRHTVEPASDATGGGSELAFMVDDGAAVDALYAEW 80 (114)
T ss_pred EEEEC--CHHHHHHHHHHHcCCCccCCCCceEEEEeCCCcEEEEeeccccCCCCCCCCCceEEEEEcCCHHHHHHHHHHH
Confidence 46777 999999999999994332 22 2233333221111111122256789999975 88999999
Q ss_pred HhCCCee--------eceEEEEECCCCCeEEEec
Q 044588 82 MSGGVWA--------TGRVGKVKDPCGFTWLIYS 107 (117)
Q Consensus 82 ~~~G~~v--------g~r~~~v~DP~G~~w~l~~ 107 (117)
.++|+++ .++.++++||+||.|+|++
T Consensus 81 ~~~g~~v~~~~~~~~~g~~~~~~DPdGn~ie~~~ 114 (114)
T cd07261 81 QAKGVKIIQEPTEMDFGYTFVALDPDGHRLRVFA 114 (114)
T ss_pred HHCCCeEecCccccCCccEEEEECCCCCEEEeeC
Confidence 9999988 2477899999999999974
No 16
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.59 E-value=6.9e-14 Score=93.07 Aligned_cols=95 Identities=17% Similarity=0.202 Sum_probs=67.3
Q ss_pred EEEEecCCCHHHHHHHHHhhhCeEEEE--------------cCeEEEEecCCC-CCc-c---ccCCCcceEEEEEeCCHH
Q 044588 15 PQLLVEESKATNVVQFYKTTSGAQLEI--------------AGSTFLVSNFSN-DSA-A---AKNMGIGCVLCLEIDDVE 75 (117)
Q Consensus 15 p~L~v~~~D~~~a~~FY~~~fG~~l~~--------------~~~~l~~~~~~~-~g~-~---~~~~~~~~~l~l~v~dvd 75 (117)
..|.|+ |++++++||+++||.++.. ++..+++..... .+. . ...+....+++|.|+|++
T Consensus 4 i~i~V~--D~e~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~g~~~l~l~~~~~~~~~~~~~~~~~~~g~~hia~~V~Dvd 81 (136)
T cd08342 4 VEFYVG--NAKQLASWFSTKLGFEPVAYHGSEDKASYLLRQGDINFVLNSPLNSFAPVADFLEKHGDGVCDVAFRVDDAA 81 (136)
T ss_pred EEEEeC--CHHHHHHHHHHhcCCeEEEecCCCceEEEEEEcCCEEEEEecCCCCCCchHHHHHhcCCceEEEEEEeCCHH
Confidence 456777 9999999999999954422 112233322111 010 0 011223468999999999
Q ss_pred HHHHHHHhCCCee---------eceEEEEECCCCCeEEEecccCC
Q 044588 76 AALAKAMSGGVWA---------TGRVGKVKDPCGFTWLIYSPVKK 111 (117)
Q Consensus 76 ~~~~~~~~~G~~v---------g~r~~~v~DP~G~~w~l~~~~~~ 111 (117)
++++++.++|+++ |.|.++++||+|++|+|.+....
T Consensus 82 a~~~~l~~~G~~v~~~p~~~~~~~~~~~i~dp~G~~ie~~~~~~~ 126 (136)
T cd08342 82 AAYERAVARGAKPVQEPVEEPGELKIAAIKGYGDSLHTLVDRKGY 126 (136)
T ss_pred HHHHHHHHcCCeEccCceecCCeEEEEEEeccCCcEEEEEecCCC
Confidence 9999999999998 56899999999999999997643
No 17
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.58 E-value=3.2e-14 Score=90.04 Aligned_cols=88 Identities=22% Similarity=0.171 Sum_probs=61.3
Q ss_pred EEecCCCHHHHHHHHHhhhCeEEEEc-CeEEEEecCC----------CCCccccCCCcceEEEEEeCCHHHHHHHHHhCC
Q 044588 17 LLVEESKATNVVQFYKTTSGAQLEIA-GSTFLVSNFS----------NDSAAAKNMGIGCVLCLEIDDVEAALAKAMSGG 85 (117)
Q Consensus 17 L~v~~~D~~~a~~FY~~~fG~~l~~~-~~~l~~~~~~----------~~g~~~~~~~~~~~l~l~v~dvd~~~~~~~~~G 85 (117)
|.++ |+++|.+||+++||.+.... +....+.... .............+++|.|+|++++++++.++|
T Consensus 1 l~v~--d~~~a~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dv~~~~~~l~~~G 78 (108)
T PF12681_consen 1 LPVS--DLEAAAAFYEDVLGFEVVFDDPDYVDFSLGFRFHDGVIEFLQFPDPPGPPGGGFHLCFEVEDVDALYERLKELG 78 (108)
T ss_dssp EEES--SHHHHHHHHHHTTTSEEEEEETSEEEEEETEEEEEEEEEEEEEESSSSSSSSEEEEEEEESHHHHHHHHHHHTT
T ss_pred CccC--CHHHHHHHHHHhcCCEEEEeCCCeEEEEeccchhhhhHHHccCCccccCCCceeEEEEEEcCHHHHHHHHHHCC
Confidence 5677 99999999999999555432 1111111000 000011223367899999999999999999999
Q ss_pred Cee---------eceEEEEECCCCCeEEEe
Q 044588 86 VWA---------TGRVGKVKDPCGFTWLIY 106 (117)
Q Consensus 86 ~~v---------g~r~~~v~DP~G~~w~l~ 106 (117)
+++ |.+.++++||+||.|+|+
T Consensus 79 ~~~~~~~~~~~~g~~~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 79 AEIVTEPRDDPWGQRSFYFIDPDGNRIEFC 108 (108)
T ss_dssp SEEEEEEEEETTSEEEEEEE-TTS-EEEEE
T ss_pred CeEeeCCEEcCCCeEEEEEECCCCCEEEeC
Confidence 987 568999999999999985
No 18
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.57 E-value=9.6e-14 Score=89.93 Aligned_cols=88 Identities=19% Similarity=0.253 Sum_probs=60.7
Q ss_pred EEEecCCCHHHHHHHHHhhhCeE------------EEEc-CeEEEEecCCCC----CccccCCCcceEEEEEe---CCHH
Q 044588 16 QLLVEESKATNVVQFYKTTSGAQ------------LEIA-GSTFLVSNFSND----SAAAKNMGIGCVLCLEI---DDVE 75 (117)
Q Consensus 16 ~L~v~~~D~~~a~~FY~~~fG~~------------l~~~-~~~l~~~~~~~~----g~~~~~~~~~~~l~l~v---~dvd 75 (117)
.|.|+ |+++|++||++ ||.+ +..+ +..+++...... .......+...++++.+ +|++
T Consensus 5 ~l~V~--D~~~a~~FY~~-LGf~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~dvd 81 (122)
T cd07235 5 GIVVA--DMAKSLDFYRR-LGFDFPEEADDEPHVEAVLPGGVRLAWDTVESIRSFTPGWTPTGGHRIALAFLCETPAEVD 81 (122)
T ss_pred EEEec--cHHHHHHHHHH-hCceecCCcCCCCcEEEEeCCCEEEEEEcccceeeecCCCCCCCCCcEEEEEEcCCHHHHH
Confidence 46677 99999999975 8933 3333 344554332110 01111222456777765 4899
Q ss_pred HHHHHHHhCCCee---------eceEEEEECCCCCeEEEe
Q 044588 76 AALAKAMSGGVWA---------TGRVGKVKDPCGFTWLIY 106 (117)
Q Consensus 76 ~~~~~~~~~G~~v---------g~r~~~v~DP~G~~w~l~ 106 (117)
++++++.++|+++ |.++++++||+||.|+|+
T Consensus 82 ~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iel~ 121 (122)
T cd07235 82 ALYAELVGAGYPGHKEPWDAPWGQRYAIVKDPDGNLVDLF 121 (122)
T ss_pred HHHHHHHHCCCCcCCCCccCCCCCEEEEEECCCCCEEEEe
Confidence 9999999999876 668899999999999986
No 19
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.56 E-value=2.2e-13 Score=87.11 Aligned_cols=91 Identities=23% Similarity=0.300 Sum_probs=65.1
Q ss_pred EEEEecCCCHHHHHHHHHhhhCeEEEEcC---e-EEEEecCC-C-C-----CccccCCCcceEEEEEeCCHHHHHHHHHh
Q 044588 15 PQLLVEESKATNVVQFYKTTSGAQLEIAG---S-TFLVSNFS-N-D-----SAAAKNMGIGCVLCLEIDDVEAALAKAMS 83 (117)
Q Consensus 15 p~L~v~~~D~~~a~~FY~~~fG~~l~~~~---~-~l~~~~~~-~-~-----g~~~~~~~~~~~l~l~v~dvd~~~~~~~~ 83 (117)
..|.++ |++++++||+++||.++.... . ..++.... . . .......+.+.+++|.++|+++.++++++
T Consensus 4 i~l~v~--d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~v~di~~~~~~l~~ 81 (114)
T cd07247 4 FELPTT--DPERAKAFYGAVFGWTFEDMGDGGGDYAVFSTGGGAVGGLMKAPEPAAGSPPGWLVYFAVDDVDAAAARVEA 81 (114)
T ss_pred EEeeCC--CHHHHHHHHHhccCceeeeccCCCCceEEEEeCCccEEEEecCCCCCCCCCCeEEEEEEeCCHHHHHHHHHH
Confidence 345666 999999999999996654332 2 22222110 0 0 00001234678999999999999999999
Q ss_pred CCCee---------eceEEEEECCCCCeEEEec
Q 044588 84 GGVWA---------TGRVGKVKDPCGFTWLIYS 107 (117)
Q Consensus 84 ~G~~v---------g~r~~~v~DP~G~~w~l~~ 107 (117)
+|+++ +.+.++++||+||.|+|++
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 82 AGGKVLVPPTDIPGVGRFAVFADPEGAVFGLWQ 114 (114)
T ss_pred CCCEEEeCCcccCCcEEEEEEECCCCCEEEeEC
Confidence 99987 3578899999999999975
No 20
>COG3865 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.52 E-value=3.3e-13 Score=90.53 Aligned_cols=96 Identities=20% Similarity=0.330 Sum_probs=75.1
Q ss_pred CCcceeEEEEecCCCHHHHHHHHHhhhC------------------------eEEEEcCeEEEEecCCCCCccccCCCcc
Q 044588 9 NFMGMKPQLLVEESKATNVVQFYKTTSG------------------------AQLEIAGSTFLVSNFSNDSAAAKNMGIG 64 (117)
Q Consensus 9 ~~~~~~p~L~v~~~D~~~a~~FY~~~fG------------------------~~l~~~~~~l~~~~~~~~g~~~~~~~~~ 64 (117)
-+.+++|+|.++ ++.++|.+||.++|- ++++++|..++..+..+ ..... -...
T Consensus 2 ~~~kit~~L~F~-~~AeeA~~fY~s~FpdS~i~~i~r~p~~~~~g~~G~Vl~a~F~l~g~~f~~ld~g~-~~~f~-fneA 78 (151)
T COG3865 2 MMPKITPFLWFD-GNAEEAMNFYLSTFPDSKIIGITRYPEGEPGGKEGKVLVAEFTLNGQSFMALDGGP-NTSFK-FNEA 78 (151)
T ss_pred CCCcceeEEEEC-CcHHHHHHHHHHhCCcceeeeeeecCCCCCCCCCccEEEEEEEECCeEEEEEcCCC-CcCCC-cCcc
Confidence 467899999998 489999999999998 56667777777666543 11111 1267
Q ss_pred eEEEEEeC---CHHHHHHHHHhCCCeeeceEEEEECCCCCeEEEecc
Q 044588 65 CVLCLEID---DVEAALAKAMSGGVWATGRVGKVKDPCGFTWLIYSP 108 (117)
Q Consensus 65 ~~l~l~v~---dvd~~~~~~~~~G~~vg~r~~~v~DP~G~~w~l~~~ 108 (117)
+++.+.++ ++|+.|+++++.|++. .++++++|++|+.|+|.-+
T Consensus 79 ~S~~v~~~~q~E~Drlwnal~~~g~e~-~~cgW~kDKfGVSWQi~p~ 124 (151)
T COG3865 79 FSFQVACDDQEEIDRLWNALSDNGGEA-EACGWLKDKFGVSWQIVPR 124 (151)
T ss_pred EEEEEEcCCHHHHHHHHHHHhccCcch-hcceeEecccCcEEEEcHH
Confidence 88888887 5678999999999774 7899999999999999754
No 21
>PRK11478 putative lyase; Provisional
Probab=99.49 E-value=1.4e-12 Score=85.11 Aligned_cols=92 Identities=22% Similarity=0.310 Sum_probs=62.2
Q ss_pred EEEEecCCCHHHHHHHHHhhhCeEEEE----------------cCe-EEEEecCC-CCCccccCCCcc-eEEEEEeCCHH
Q 044588 15 PQLLVEESKATNVVQFYKTTSGAQLEI----------------AGS-TFLVSNFS-NDSAAAKNMGIG-CVLCLEIDDVE 75 (117)
Q Consensus 15 p~L~v~~~D~~~a~~FY~~~fG~~l~~----------------~~~-~l~~~~~~-~~g~~~~~~~~~-~~l~l~v~dvd 75 (117)
..|.|+ |++++++||+++||.++.. ++. .+.+.... +.+.+......+ .+++|.|+|++
T Consensus 10 v~l~v~--D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~g~~hi~f~v~d~~ 87 (129)
T PRK11478 10 IAIIAT--DYAVSKAFYCDILGFTLQSEVYREARDSWKGDLALNGQYVIELFSFPFPPERPSRPEACGLRHLAFSVDDID 87 (129)
T ss_pred EEEEcC--CHHHHHHHHHHHhCCEecccccccccccceeeEecCCCcEEEEEEecCCCCCCCCCCCCceeEEEEEeCCHH
Confidence 355666 9999999999999955421 111 11111110 111111111123 48999999999
Q ss_pred HHHHHHHhCCCee---------eceEEEEECCCCCeEEEecc
Q 044588 76 AALAKAMSGGVWA---------TGRVGKVKDPCGFTWLIYSP 108 (117)
Q Consensus 76 ~~~~~~~~~G~~v---------g~r~~~v~DP~G~~w~l~~~ 108 (117)
++++++.++|+++ |.++.+++||+||.|+|.+.
T Consensus 88 ~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iEl~~~ 129 (129)
T PRK11478 88 AAVAHLESHNVKCEAIRVDPYTQKRFTFFNDPDGLPLELYEQ 129 (129)
T ss_pred HHHHHHHHcCCeeeccccCCCCCCEEEEEECCCCCEEEEEeC
Confidence 9999999999986 45788999999999999863
No 22
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.49 E-value=1.8e-12 Score=82.53 Aligned_cols=90 Identities=22% Similarity=0.321 Sum_probs=62.6
Q ss_pred EEEecCCCHHHHHHHHHhhhCeEEEEc-----Ce-E------------EEEecCCCC-CccccCCCcceEEEEEeCCHHH
Q 044588 16 QLLVEESKATNVVQFYKTTSGAQLEIA-----GS-T------------FLVSNFSND-SAAAKNMGIGCVLCLEIDDVEA 76 (117)
Q Consensus 16 ~L~v~~~D~~~a~~FY~~~fG~~l~~~-----~~-~------------l~~~~~~~~-g~~~~~~~~~~~l~l~v~dvd~ 76 (117)
.|.+. |++++.+||+++||.++... +. . +++...... .......+...++++.|+|+++
T Consensus 3 ~l~v~--d~~~~~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~di~~ 80 (119)
T cd07263 3 SLYVD--DQDKALAFYTEKLGFEVREDVPMGGGFRWVTVAPPGSPETSLVLAPPANPAAMSGLQPGGTPGLVLATDDIDA 80 (119)
T ss_pred eEEeC--CHHHHHHHHHhccCeEEEEeeccCCCcEEEEEeCCCCCeeEEEEeCCCCccccccccCCCceEEEEEehHHHH
Confidence 45677 99999999999999554321 11 1 222111100 0000112345689999999999
Q ss_pred HHHHHHhCCCee--------eceEEEEECCCCCeEEEec
Q 044588 77 ALAKAMSGGVWA--------TGRVGKVKDPCGFTWLIYS 107 (117)
Q Consensus 77 ~~~~~~~~G~~v--------g~r~~~v~DP~G~~w~l~~ 107 (117)
+++++.++|+++ +.+.++++||+||.|+|++
T Consensus 81 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 81 TYEELKARGVEFSEEPREMPYGTVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred HHHHHHhCCCEEeeccccCCCceEEEEECCCCCEEEEeC
Confidence 999999999988 4578999999999999974
No 23
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.48 E-value=1.4e-12 Score=83.85 Aligned_cols=89 Identities=22% Similarity=0.188 Sum_probs=60.8
Q ss_pred EEEecCCCHHHHHHHHHhhhCeEEEE----cC--eE-EEEecCC----C-------CC--ccccCCCcceEEEEEeCCHH
Q 044588 16 QLLVEESKATNVVQFYKTTSGAQLEI----AG--ST-FLVSNFS----N-------DS--AAAKNMGIGCVLCLEIDDVE 75 (117)
Q Consensus 16 ~L~v~~~D~~~a~~FY~~~fG~~l~~----~~--~~-l~~~~~~----~-------~g--~~~~~~~~~~~l~l~v~dvd 75 (117)
.|.++ |+++|.+||+++||.++.. .+ .. ..+.... . .+ .+.....+..++++.++|+|
T Consensus 5 ~i~v~--d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~v~did 82 (121)
T cd07233 5 MLRVK--DLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYNWGTEEPYDNGNGFGHLAFAVDDVY 82 (121)
T ss_pred EEEec--CcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEecCCCCCCcCCCCCeEEEEEEeCCHH
Confidence 45666 9999999999999955432 11 11 1121110 0 00 00111113368999999999
Q ss_pred HHHHHHHhCCCee--------eceEEEEECCCCCeEEEe
Q 044588 76 AALAKAMSGGVWA--------TGRVGKVKDPCGFTWLIY 106 (117)
Q Consensus 76 ~~~~~~~~~G~~v--------g~r~~~v~DP~G~~w~l~ 106 (117)
+++++++++|+++ +.++++++||+||.|+|+
T Consensus 83 ~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DpdG~~iE~~ 121 (121)
T cd07233 83 AACERLEEMGVEVTKPPGDGGMKGIAFIKDPDGYWIELI 121 (121)
T ss_pred HHHHHHHHCCCEEeeCCccCCCceEEEEECCCCCEEEeC
Confidence 9999999999988 457889999999999984
No 24
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.48 E-value=6.7e-13 Score=85.81 Aligned_cols=90 Identities=17% Similarity=0.117 Sum_probs=60.2
Q ss_pred EEEecCCCHHHHHHHHHhhhCeEEE----------EcCeEEEEecCC-CCC---cccc----CCCcceEEEEEeCCHHHH
Q 044588 16 QLLVEESKATNVVQFYKTTSGAQLE----------IAGSTFLVSNFS-NDS---AAAK----NMGIGCVLCLEIDDVEAA 77 (117)
Q Consensus 16 ~L~v~~~D~~~a~~FY~~~fG~~l~----------~~~~~l~~~~~~-~~g---~~~~----~~~~~~~l~l~v~dvd~~ 77 (117)
.|.|+ |++++++||+++||.++. .++..+++.... ... .... .....+.+++.++|++++
T Consensus 4 ~l~v~--Dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~dv~~~ 81 (125)
T cd08357 4 AIPVR--DLEAARAFYGDVLGCKEGRSSETWVDFDFFGHQLVAHLSPNFNADASDNAVDGHPVPVPHFGLILSEEEFDAL 81 (125)
T ss_pred EEEeC--CHHHHHHHHHHhcCCEEeeccCCcccccccCcEEEEEeccCCCcccccCCCCCCccCCceEEEEEeHHHHHHH
Confidence 35566 999999999999995442 223344432111 100 0000 011334567788999999
Q ss_pred HHHHHhCCCee-------------eceEEEEECCCCCeEEEec
Q 044588 78 LAKAMSGGVWA-------------TGRVGKVKDPCGFTWLIYS 107 (117)
Q Consensus 78 ~~~~~~~G~~v-------------g~r~~~v~DP~G~~w~l~~ 107 (117)
++++.++|+++ +.+.++++||+||.|+|.+
T Consensus 82 ~~~l~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~ 124 (125)
T cd08357 82 AERLEAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKA 124 (125)
T ss_pred HHHHHHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEee
Confidence 99999999877 1367899999999999864
No 25
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.48 E-value=1.4e-12 Score=85.02 Aligned_cols=92 Identities=16% Similarity=0.190 Sum_probs=62.2
Q ss_pred eeEEEEecCCCHHHHHHHHHhhhCeEEE------------Ec-CeEEEEecCCC---C-Cccc--cCCCcceEEEEEeC-
Q 044588 13 MKPQLLVEESKATNVVQFYKTTSGAQLE------------IA-GSTFLVSNFSN---D-SAAA--KNMGIGCVLCLEID- 72 (117)
Q Consensus 13 ~~p~L~v~~~D~~~a~~FY~~~fG~~l~------------~~-~~~l~~~~~~~---~-g~~~--~~~~~~~~l~l~v~- 72 (117)
+...|.|+ |+++|++||++ ||.++. .+ +..+++..... . ..+. ..++...+++|.|+
T Consensus 2 ~~v~l~V~--Dl~~s~~FY~~-lGf~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~f~v~~ 78 (124)
T cd09012 2 IFINLPVK--DLEKSTAFYTA-LGFEFNPQFSDEKAACMVISDNIFVMLLTEDFFQTFTPKPIADTKKSTEVLISLSADS 78 (124)
T ss_pred EEEEeecC--CHHHHHHHHHH-CCCEEccccCCCCeEEEEECCceEEEEEcHHHHhhccCCCcccCCCCCeEEEEEeCCC
Confidence 35567788 99999999987 894432 22 22344433211 0 0000 11224578999997
Q ss_pred --CHHHHHHHHHhCCCee--------eceEEEEECCCCCeEEEec
Q 044588 73 --DVEAALAKAMSGGVWA--------TGRVGKVKDPCGFTWLIYS 107 (117)
Q Consensus 73 --dvd~~~~~~~~~G~~v--------g~r~~~v~DP~G~~w~l~~ 107 (117)
|+|++++++.++|+++ +.+.++++||+||.|+|+.
T Consensus 79 ~~~vd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 79 REEVDELVEKALAAGGKEFREPQDHGFMYGRSFADLDGHLWEVLW 123 (124)
T ss_pred HHHHHHHHHHHHHCCCcccCCcccCCceEEEEEECCCCCEEEEEE
Confidence 6889999999999987 3356789999999999974
No 26
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.47 E-value=2.1e-12 Score=81.16 Aligned_cols=87 Identities=21% Similarity=0.181 Sum_probs=59.2
Q ss_pred EEecCCCHHHHHHHHHhhhCeEEEE-------------cCe-EEEEecCCCCCccccCCCcceEEEEEeCCHHHHHHHHH
Q 044588 17 LLVEESKATNVVQFYKTTSGAQLEI-------------AGS-TFLVSNFSNDSAAAKNMGIGCVLCLEIDDVEAALAKAM 82 (117)
Q Consensus 17 L~v~~~D~~~a~~FY~~~fG~~l~~-------------~~~-~l~~~~~~~~g~~~~~~~~~~~l~l~v~dvd~~~~~~~ 82 (117)
|.++ |++++.+||+++||..+.. ++. .+.+.............+...+++|.|+|++++++++.
T Consensus 6 l~v~--d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~l~ 83 (114)
T cd07245 6 LRVP--DLEASRAFYTDVLGLEEGPRPPFLFPGAWLYAGDGPQLHLIEEDPPDALPEGPGRDDHIAFRVDDLDAFRARLK 83 (114)
T ss_pred EecC--CHHHHHHHHHHccCCcccCcCCCCCCceEEEeCCCcEEEEEecCCCccccCCCcccceEEEEeCCHHHHHHHHH
Confidence 4555 9999999999999944321 111 22222111100000112244689999999999999999
Q ss_pred hCCCee--------eceEEEEECCCCCeEEE
Q 044588 83 SGGVWA--------TGRVGKVKDPCGFTWLI 105 (117)
Q Consensus 83 ~~G~~v--------g~r~~~v~DP~G~~w~l 105 (117)
++|+++ +.+.++++||+|+.|+|
T Consensus 84 ~~g~~~~~~~~~~~~~~~~~~~DP~G~~iE~ 114 (114)
T cd07245 84 AAGVPYTESDVPGDGVRQLFVRDPDGNRIEL 114 (114)
T ss_pred HcCCCcccccCCCCCccEEEEECCCCCEEeC
Confidence 999988 34678999999999985
No 27
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.46 E-value=1.3e-12 Score=83.37 Aligned_cols=87 Identities=21% Similarity=0.248 Sum_probs=59.9
Q ss_pred EEEecCCCHHHHHHHHHhhhCeEEEE----------cCeEEEEecCCCCCccccCCCcceEEEEEe--CCHHHHHHHHHh
Q 044588 16 QLLVEESKATNVVQFYKTTSGAQLEI----------AGSTFLVSNFSNDSAAAKNMGIGCVLCLEI--DDVEAALAKAMS 83 (117)
Q Consensus 16 ~L~v~~~D~~~a~~FY~~~fG~~l~~----------~~~~l~~~~~~~~g~~~~~~~~~~~l~l~v--~dvd~~~~~~~~ 83 (117)
.|.|+ |++++++||+++||.++.. ++..+.+... + .... ..+...++.|.| +|++++++++.+
T Consensus 3 ~l~v~--d~~~s~~Fy~~~lg~~~~~~~~~~~~~~~~~~~l~~~~~-~-~~~~-~~~~~~hiaf~v~~~d~~~~~~~l~~ 77 (113)
T cd08345 3 TLIVK--DLNKSIAFYRDILGAELIYSSSKEAYFELAGLWICLMEE-D-SLQG-PERTYTHIAFQIQSEEFDEYTERLKA 77 (113)
T ss_pred eEEEC--CHHHHHHHHHHhcCCeeeeccCceeEEEecCeEEEeccC-C-CcCC-CCCCccEEEEEcCHHHHHHHHHHHHH
Confidence 46677 9999999999999954432 2222333221 1 1111 111223666666 589999999999
Q ss_pred CCCee---------eceEEEEECCCCCeEEEec
Q 044588 84 GGVWA---------TGRVGKVKDPCGFTWLIYS 107 (117)
Q Consensus 84 ~G~~v---------g~r~~~v~DP~G~~w~l~~ 107 (117)
+|+++ +.+.++++||+||.|+|++
T Consensus 78 ~G~~~~~~~~~~~~~~~~~~~~DPdG~~iEi~~ 110 (113)
T cd08345 78 LGVEMKPERPRVQGEGRSIYFYDPDGHLLELHA 110 (113)
T ss_pred cCCccCCCccccCCCceEEEEECCCCCEEEEEe
Confidence 99987 3578899999999999985
No 28
>PRK10291 glyoxalase I; Provisional
Probab=99.46 E-value=2e-12 Score=84.89 Aligned_cols=93 Identities=17% Similarity=0.238 Sum_probs=63.4
Q ss_pred EEecCCCHHHHHHHHHhhhCeEEEE----cC--eEEEEecCCC------------CCccccCCCcc-eEEEEEeCCHHHH
Q 044588 17 LLVEESKATNVVQFYKTTSGAQLEI----AG--STFLVSNFSN------------DSAAAKNMGIG-CVLCLEIDDVEAA 77 (117)
Q Consensus 17 L~v~~~D~~~a~~FY~~~fG~~l~~----~~--~~l~~~~~~~------------~g~~~~~~~~~-~~l~l~v~dvd~~ 77 (117)
|.|. |+++|++||+++||.++.. .+ ..+.+....+ .+......+.+ .+++|.|+|++++
T Consensus 2 l~V~--Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~hlaf~V~d~~~~ 79 (129)
T PRK10291 2 LRVG--DLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGVDKYELGTAYGHIALSVDNAAEA 79 (129)
T ss_pred EEec--CHHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccCCCCCcceEEeeecCCCCCCcCCCCeeEEEEEeCCHHHH
Confidence 6677 9999999999999965532 11 1222211100 00001111233 4899999999999
Q ss_pred HHHHHhCCCee---------ec-eEEEEECCCCCeEEEecccCC
Q 044588 78 LAKAMSGGVWA---------TG-RVGKVKDPCGFTWLIYSPVKK 111 (117)
Q Consensus 78 ~~~~~~~G~~v---------g~-r~~~v~DP~G~~w~l~~~~~~ 111 (117)
++++.++|+++ |. +.++++||+||.|+|.+..+.
T Consensus 80 ~~~l~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~~~ 123 (129)
T PRK10291 80 CEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEKDA 123 (129)
T ss_pred HHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEcccc
Confidence 99999999876 22 457889999999999997753
No 29
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.46 E-value=1.6e-12 Score=84.73 Aligned_cols=98 Identities=13% Similarity=0.062 Sum_probs=63.4
Q ss_pred CCcceeEEEEecCCCHHHHHHHHHhhhCeEEEEc-CeEEEE-ecCCC-CCc-cccCCCcceEEEEEeC--CHHHHHHHHH
Q 044588 9 NFMGMKPQLLVEESKATNVVQFYKTTSGAQLEIA-GSTFLV-SNFSN-DSA-AAKNMGIGCVLCLEID--DVEAALAKAM 82 (117)
Q Consensus 9 ~~~~~~p~L~v~~~D~~~a~~FY~~~fG~~l~~~-~~~l~~-~~~~~-~g~-~~~~~~~~~~l~l~v~--dvd~~~~~~~ 82 (117)
++.-....|.|+ |+++|++||+++||.+.... +....+ ..... ... .........++.|.++ |+++.++++.
T Consensus 2 ~~~~~hv~l~v~--Dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~h~a~~v~~~dl~~~~~~l~ 79 (123)
T cd08351 2 TVTLNHTIVPAR--DREASAEFYAEILGLPWAKPFGPFAVVKLDNGVSLDFAQPDGEIPPQHYAFLVSEEEFDRIFARIR 79 (123)
T ss_pred cceEeEEEEEcC--CHHHHHHHHHHhcCCEeeeccCCEEEEEcCCCcEEEEecCCCCCCcceEEEEeCHHHHHHHHHHHH
Confidence 334445677777 99999999999999655432 211111 11100 000 0000112345555554 7999999999
Q ss_pred hCCCee----------------eceEEEEECCCCCeEEEecc
Q 044588 83 SGGVWA----------------TGRVGKVKDPCGFTWLIYSP 108 (117)
Q Consensus 83 ~~G~~v----------------g~r~~~v~DP~G~~w~l~~~ 108 (117)
++|+++ |.|.++++||+||.|+|++.
T Consensus 80 ~~G~~~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 121 (123)
T cd08351 80 ERGIDYWADPQRTEPGQINTNDGGRGVYFLDPDGHLLEIITR 121 (123)
T ss_pred HcCCceecCCcccccccccCCCCeeEEEEECCCCCEEEEEec
Confidence 999874 45889999999999999976
No 30
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.45 E-value=4.1e-12 Score=81.61 Aligned_cols=90 Identities=20% Similarity=0.232 Sum_probs=61.0
Q ss_pred EEEecCCCHHHHHHHHHhhhCeEEEEc----C--eE-EEEec-C---------CCCC-ccccCCCcc-eEEEEEeCCHHH
Q 044588 16 QLLVEESKATNVVQFYKTTSGAQLEIA----G--ST-FLVSN-F---------SNDS-AAAKNMGIG-CVLCLEIDDVEA 76 (117)
Q Consensus 16 ~L~v~~~D~~~a~~FY~~~fG~~l~~~----~--~~-l~~~~-~---------~~~g-~~~~~~~~~-~~l~l~v~dvd~ 76 (117)
.|.|. |.++|++||+++||.++... + .. +.+.. . .... .+....+.+ .++++.|+|+++
T Consensus 8 ~l~v~--d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~g~~h~~~~v~d~~~ 85 (125)
T cd08352 8 AIICS--DYEKSKEFYVEILGFKVIREVYRPERGSYKLDLLLNGGYQLELFSFPNPPERPSYPEACGLRHLAFSVEDIEA 85 (125)
T ss_pred EEEcC--CHHHHHHHHHHhcCCEEeeeeecCCCCcEEEEEecCCCcEEEEEEcCCCCCCCCCCcCCCceEEEEEeCCHHH
Confidence 45666 99999999999999554321 1 11 11111 0 0000 000111133 479999999999
Q ss_pred HHHHHHhCCCee---------eceEEEEECCCCCeEEEec
Q 044588 77 ALAKAMSGGVWA---------TGRVGKVKDPCGFTWLIYS 107 (117)
Q Consensus 77 ~~~~~~~~G~~v---------g~r~~~v~DP~G~~w~l~~ 107 (117)
+++++.++|+++ |.++++++||+|+.|+|.+
T Consensus 86 ~~~~l~~~G~~~~~~~~~~~~~~~~~~~~DP~G~~iEl~~ 125 (125)
T cd08352 86 AVKHLKAKGVEVEPIRVDEFTGKRFTFFYDPDGLPLELYE 125 (125)
T ss_pred HHHHHHHcCCccccccccCCCceEEEEEECCCCCEEEecC
Confidence 999999999887 4568899999999999974
No 31
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.45 E-value=2.8e-12 Score=82.53 Aligned_cols=94 Identities=21% Similarity=0.295 Sum_probs=62.1
Q ss_pred eeEEEEecCCCHHHHHHHHHhhhCeEEEE-c-Ce----------EEEEecCCCCC---c-cccCCCcc-eEEEEEe--CC
Q 044588 13 MKPQLLVEESKATNVVQFYKTTSGAQLEI-A-GS----------TFLVSNFSNDS---A-AAKNMGIG-CVLCLEI--DD 73 (117)
Q Consensus 13 ~~p~L~v~~~D~~~a~~FY~~~fG~~l~~-~-~~----------~l~~~~~~~~g---~-~~~~~~~~-~~l~l~v--~d 73 (117)
+...|.+. |.+++++||+++||.++.. . +. .+.+....... . .......+ .+++|.+ +|
T Consensus 2 ~~~~l~v~--d~~~s~~Fy~~~lG~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d 79 (122)
T cd08354 2 LETALYVD--DLEAAEAFYEDVLGLELMLKEDRRLAFFWVGGRGMLLLFDPGATSTPGGEIPPHGGSGPGHFAFAIPAEE 79 (122)
T ss_pred eEEEEEeC--CHHHHHHHHHhccCCEEeecCCCceEEEEcCCCcEEEEEecCCcccccCCCCCCCCCCccEEEEEcCHHH
Confidence 35678888 9999999999999955443 1 11 12222111000 0 00011112 3555555 68
Q ss_pred HHHHHHHHHhCCCee--------eceEEEEECCCCCeEEEecc
Q 044588 74 VEAALAKAMSGGVWA--------TGRVGKVKDPCGFTWLIYSP 108 (117)
Q Consensus 74 vd~~~~~~~~~G~~v--------g~r~~~v~DP~G~~w~l~~~ 108 (117)
++++++++.++|+++ +.+.++++||+||.|+|+++
T Consensus 80 l~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 122 (122)
T cd08354 80 LAEWEAHLEAKGVAIESEVQWPRGGRSLYFRDPDGNLLELATP 122 (122)
T ss_pred HHHHHHHHHhcCCceeccccCCCCeeEEEEECCCCCEEEEecC
Confidence 999999999999977 46788999999999999864
No 32
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.45 E-value=4.7e-12 Score=84.48 Aligned_cols=91 Identities=14% Similarity=0.187 Sum_probs=61.9
Q ss_pred EEEEecCCCHHHHHHHHHhhhCeEEEE----------cCeEEEEecCCCCCccccCCCc-ceEEEEEeC--CHHHHHHHH
Q 044588 15 PQLLVEESKATNVVQFYKTTSGAQLEI----------AGSTFLVSNFSNDSAAAKNMGI-GCVLCLEID--DVEAALAKA 81 (117)
Q Consensus 15 p~L~v~~~D~~~a~~FY~~~fG~~l~~----------~~~~l~~~~~~~~g~~~~~~~~-~~~l~l~v~--dvd~~~~~~ 81 (117)
..|.++ |++++.+||+++||.++.. ++..+.+... + ..+....+. ..++.|.++ |++++++++
T Consensus 8 i~L~v~--Dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~g~~l~l~~~-~-~~~~~~~~~~~~hiaf~v~~~dv~~~~~~l 83 (139)
T PRK04101 8 ICFSVS--NLEKSIEFYEKVLGAKLLVKGRKTAYFDLNGLWIALNEE-K-DIPRNEIHQSYTHIAFSIEEEDFDHWYQRL 83 (139)
T ss_pred EEEEec--CHHHHHHHHHhccCCEEEeecCeeEEEecCCeEEEeecc-C-CCCCccCCCCeeEEEEEecHHHHHHHHHHH
Confidence 355666 9999999999999965432 2333333221 1 111111112 235566655 999999999
Q ss_pred HhCCCee---------eceEEEEECCCCCeEEEeccc
Q 044588 82 MSGGVWA---------TGRVGKVKDPCGFTWLIYSPV 109 (117)
Q Consensus 82 ~~~G~~v---------g~r~~~v~DP~G~~w~l~~~~ 109 (117)
.++|+++ +.+.++++||+||.|+|.+..
T Consensus 84 ~~~G~~i~~~~~~~~~~~~~~~~~DPdGn~iEl~~~~ 120 (139)
T PRK04101 84 KENDVNILPGRERDERDKKSIYFTDPDGHKFEFHTGT 120 (139)
T ss_pred HHCCceEcCCccccCCCceEEEEECCCCCEEEEEeCC
Confidence 9999987 457889999999999998754
No 33
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.44 E-value=6.7e-12 Score=80.61 Aligned_cols=90 Identities=18% Similarity=0.146 Sum_probs=60.2
Q ss_pred EEEecCCCHHHHHHHHHhhhCeEEEE------------cCeEEEEecCCC-CCccccCC-CcceEEEEEeCC-HHHHHHH
Q 044588 16 QLLVEESKATNVVQFYKTTSGAQLEI------------AGSTFLVSNFSN-DSAAAKNM-GIGCVLCLEIDD-VEAALAK 80 (117)
Q Consensus 16 ~L~v~~~D~~~a~~FY~~~fG~~l~~------------~~~~l~~~~~~~-~g~~~~~~-~~~~~l~l~v~d-vd~~~~~ 80 (117)
.|.++ |++++++||+++||..+.. ++..+.+..... ...+.... ....+++|.+++ +++++++
T Consensus 8 ~l~v~--d~~~s~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~hi~~~~~~~~~~~~~~ 85 (125)
T cd07253 8 VLTVA--DIEATLDFYTRVLGMEVVRFGEEVGRKALRFGSQKINLHPVGGEFEPAAGSPGPGSDDLCLITEPPIDELVAH 85 (125)
T ss_pred EEEec--CHHHHHHHHHHHhCceeecccccCCceEEEeCCEEEEEecCCCccCcCccCCCCCCceEEEEecccHHHHHHH
Confidence 55666 9999999999999944432 222233322111 00011111 133578888864 9999999
Q ss_pred HHhCCCee--------e----ceEEEEECCCCCeEEEec
Q 044588 81 AMSGGVWA--------T----GRVGKVKDPCGFTWLIYS 107 (117)
Q Consensus 81 ~~~~G~~v--------g----~r~~~v~DP~G~~w~l~~ 107 (117)
+.++|+++ + .+.++++||+||.|++.+
T Consensus 86 l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~ 124 (125)
T cd07253 86 LEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSN 124 (125)
T ss_pred HHHCCceeecCcccccCCCCCccEEEEECCCCCEEEeee
Confidence 99999976 1 357899999999999976
No 34
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.44 E-value=3.6e-12 Score=87.52 Aligned_cols=48 Identities=25% Similarity=0.279 Sum_probs=41.3
Q ss_pred ceEEEEEeCCHHHHHHHHHhCCCee----------e---ceEEEEECCCCCeEEEecccCC
Q 044588 64 GCVLCLEIDDVEAALAKAMSGGVWA----------T---GRVGKVKDPCGFTWLIYSPVKK 111 (117)
Q Consensus 64 ~~~l~l~v~dvd~~~~~~~~~G~~v----------g---~r~~~v~DP~G~~w~l~~~~~~ 111 (117)
..+|+|.|+|++++++++.++|+++ | .+.++++||+||.|+|+++.+.
T Consensus 94 ~~Hla~~v~dida~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~~~ 154 (162)
T TIGR03645 94 VFHFCVQDPDVEGLAERIVAAGGKKRMPVPRYYYPGEKPYRMIYMEDPFGNILEIYSHSYE 154 (162)
T ss_pred ceEEEEEcCCHHHHHHHHHHcCCcccCCCccccCCCCCceEEEEEECCCCCEEEEEEcChh
Confidence 3589999999999999999999864 1 2688999999999999988754
No 35
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.43 E-value=5.2e-12 Score=83.92 Aligned_cols=44 Identities=18% Similarity=0.270 Sum_probs=40.4
Q ss_pred eEEEEEeCCHHHHHHHHHhCCCee---------eceEEEEECCCCCeEEEecc
Q 044588 65 CVLCLEIDDVEAALAKAMSGGVWA---------TGRVGKVKDPCGFTWLIYSP 108 (117)
Q Consensus 65 ~~l~l~v~dvd~~~~~~~~~G~~v---------g~r~~~v~DP~G~~w~l~~~ 108 (117)
.+|+|.|+|++++++++.++|+++ |.|.++++||+|+.|+|.+.
T Consensus 89 ~hia~~v~d~d~~~~~l~~~G~~~~~~~~~~~~~~r~~~~~DPdG~~iEl~e~ 141 (142)
T cd08353 89 RRVMFAVDDIDARVARLRKHGAELVGEVVQYENSYRLCYIRGPEGILIELAEQ 141 (142)
T ss_pred eEEEEEeCCHHHHHHHHHHCCCceeCCceecCCCeEEEEEECCCCCEEEeeec
Confidence 489999999999999999999887 46789999999999999975
No 36
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.42 E-value=6.4e-12 Score=80.65 Aligned_cols=90 Identities=22% Similarity=0.309 Sum_probs=61.2
Q ss_pred EEEecCCCHHHHHHHHHhhhCeEEE-----------EcCeEEEEecCCC----CCccc-cCCCcceEEEEEe---CCHHH
Q 044588 16 QLLVEESKATNVVQFYKTTSGAQLE-----------IAGSTFLVSNFSN----DSAAA-KNMGIGCVLCLEI---DDVEA 76 (117)
Q Consensus 16 ~L~v~~~D~~~a~~FY~~~fG~~l~-----------~~~~~l~~~~~~~----~g~~~-~~~~~~~~l~l~v---~dvd~ 76 (117)
.|.++ |++++.+||+++||.++. .++..+.+..... .+.+. .....+.++.+.+ +|+++
T Consensus 3 ~l~v~--d~~~a~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 80 (121)
T cd07251 3 TLGVA--DLARSRAFYEALLGWKPSADSNDGVAFFQLGGLVLALFPREELAKDAGVPVPPPGFSGITLAHNVRSEEEVDA 80 (121)
T ss_pred eEeeC--CHHHHHHHHHHhcCceecccCCCceEEEEcCCeEEEEecchhhhhhcCCCCCCCCccceEEEEEcCCHHHHHH
Confidence 46677 999999999999995543 2233333332110 01111 1112455666654 58999
Q ss_pred HHHHHHhCCCee---------eceEEEEECCCCCeEEEec
Q 044588 77 ALAKAMSGGVWA---------TGRVGKVKDPCGFTWLIYS 107 (117)
Q Consensus 77 ~~~~~~~~G~~v---------g~r~~~v~DP~G~~w~l~~ 107 (117)
+++++++.|+++ |.+.++++||+||+|+|..
T Consensus 81 ~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~Gn~iei~~ 120 (121)
T cd07251 81 VLARAAAAGATIVKPPQDVFWGGYSGYFADPDGHLWEVAH 120 (121)
T ss_pred HHHHHHhCCCEEecCCccCCCCceEEEEECCCCCEEEEee
Confidence 999999999987 4678899999999999974
No 37
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.40 E-value=2e-11 Score=78.85 Aligned_cols=96 Identities=19% Similarity=0.202 Sum_probs=63.5
Q ss_pred ceeEEEEecCCCHHHHHHHHHhhhCeEEEEc--CeEEEEecCCCC-----CccccCCCcceEEEEEeCC---HHHHHHHH
Q 044588 12 GMKPQLLVEESKATNVVQFYKTTSGAQLEIA--GSTFLVSNFSND-----SAAAKNMGIGCVLCLEIDD---VEAALAKA 81 (117)
Q Consensus 12 ~~~p~L~v~~~D~~~a~~FY~~~fG~~l~~~--~~~l~~~~~~~~-----g~~~~~~~~~~~l~l~v~d---vd~~~~~~ 81 (117)
++.+.|.++ |++++.+||+++||.+.... +...+....... ..+....+...+++|.+++ +++.++++
T Consensus 2 ~~hv~l~v~--d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~f~v~~~~dl~~~~~~l 79 (120)
T cd07254 2 RFHVALNVD--DLEASIAFYSKLFGVEPTKVRDDYAKFLLEDPRLNFVLNERPGAPGGGLNHLGVQVDSAEEVAEAKARA 79 (120)
T ss_pred cEEEEEEeC--CHHHHHHHHHHHhCCeEecccCCeeEEEecCCceEEEEecCCCCCCCCeeEEEEEeCCHHHHHHHHHHH
Confidence 467788888 99999999999999544211 111111111000 0000111133478888876 78899999
Q ss_pred HhCCCee---e--------ceEEEEECCCCCeEEEeccc
Q 044588 82 MSGGVWA---T--------GRVGKVKDPCGFTWLIYSPV 109 (117)
Q Consensus 82 ~~~G~~v---g--------~r~~~v~DP~G~~w~l~~~~ 109 (117)
.++|.++ + .+..+++||+||.|+|.+..
T Consensus 80 ~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~ 118 (120)
T cd07254 80 EAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVTL 118 (120)
T ss_pred HHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEee
Confidence 9999987 1 35689999999999998753
No 38
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.40 E-value=1.1e-11 Score=80.41 Aligned_cols=91 Identities=23% Similarity=0.297 Sum_probs=60.1
Q ss_pred EEEEecCCCHHHHHHHHHhhhCeEEE----------------EcCeEEEEecCCC-CCc-cc--cCCCcce-EEEEEeCC
Q 044588 15 PQLLVEESKATNVVQFYKTTSGAQLE----------------IAGSTFLVSNFSN-DSA-AA--KNMGIGC-VLCLEIDD 73 (117)
Q Consensus 15 p~L~v~~~D~~~a~~FY~~~fG~~l~----------------~~~~~l~~~~~~~-~g~-~~--~~~~~~~-~l~l~v~d 73 (117)
..|.|+ |++++++||+++||.++. .++..+.+..... ... .. ...+.++ +++|.|+|
T Consensus 5 v~l~v~--D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~g~~~i~~~v~d 82 (128)
T TIGR03081 5 VGIAVP--DLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALGNTKVELLEPLGEDSPIAKFLEKNGGGIHHIAIEVDD 82 (128)
T ss_pred EEEEeC--CHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecCCEEEEEEecCCCCChHHHHHhcCCCceEEEEEEcCC
Confidence 346677 999999999999994432 1222333332111 100 00 0112343 89999999
Q ss_pred HHHHHHHHHhCCCee----------eceEEEE--ECCCCCeEEEec
Q 044588 74 VEAALAKAMSGGVWA----------TGRVGKV--KDPCGFTWLIYS 107 (117)
Q Consensus 74 vd~~~~~~~~~G~~v----------g~r~~~v--~DP~G~~w~l~~ 107 (117)
++++++++.++|+++ |.+..++ +||+|+.|+|.+
T Consensus 83 i~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~dp~G~~~E~~~ 128 (128)
T TIGR03081 83 IEAALETLKEKGVRLIDEEPRIGAGGKPVAFLHPKSTGGVLIELEE 128 (128)
T ss_pred HHHHHHHHHHCCCcccCCCCccCCCCCEEEEecccccCcEEEEecC
Confidence 999999999999977 2344566 799999999864
No 39
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.39 E-value=1.2e-11 Score=80.43 Aligned_cols=89 Identities=18% Similarity=0.112 Sum_probs=60.6
Q ss_pred EEEEecCCCHHHHHHHHHhhhCeEEEEc----------CeEEEEecCCCCCccccCCCcceEEEEEe--CCHHHHHHHHH
Q 044588 15 PQLLVEESKATNVVQFYKTTSGAQLEIA----------GSTFLVSNFSNDSAAAKNMGIGCVLCLEI--DDVEAALAKAM 82 (117)
Q Consensus 15 p~L~v~~~D~~~a~~FY~~~fG~~l~~~----------~~~l~~~~~~~~g~~~~~~~~~~~l~l~v--~dvd~~~~~~~ 82 (117)
..|.++ |++++.+||+++||.++... +..+.+... + . ....+...+++|.+ +|++++++++.
T Consensus 5 v~l~v~--d~~~~~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~l~~~-~--~-~~~~~~~~hi~f~v~~~dl~~~~~~l~ 78 (121)
T cd07244 5 ITLAVS--DLERSVAFYVDLLGFKLHVRWDKGAYLEAGDLWLCLSVD-A--N-VGPAKDYTHYAFSVSEEDFASLKEKLR 78 (121)
T ss_pred EEEEEC--CHHHHHHHHHHhcCCEEEEecCCceEEecCCEEEEEecC-C--C-CCCCCCeeeEEEEeCHHHHHHHHHHHH
Confidence 345666 99999999999999655321 112222110 0 0 01111334666666 68999999999
Q ss_pred hCCCee------eceEEEEECCCCCeEEEeccc
Q 044588 83 SGGVWA------TGRVGKVKDPCGFTWLIYSPV 109 (117)
Q Consensus 83 ~~G~~v------g~r~~~v~DP~G~~w~l~~~~ 109 (117)
++|+++ ..+..+++||+||.|+|++..
T Consensus 79 ~~G~~~~~~~~~~~~~~~f~DPdG~~ie~~~~~ 111 (121)
T cd07244 79 QAGVKEWKENTSEGDSFYFLDPDGHKLELHVGS 111 (121)
T ss_pred HcCCcccCCCCCCccEEEEECCCCCEEEEEeCC
Confidence 999987 346789999999999998753
No 40
>PRK06724 hypothetical protein; Provisional
Probab=99.39 E-value=1.3e-11 Score=82.01 Aligned_cols=89 Identities=13% Similarity=0.128 Sum_probs=59.4
Q ss_pred EEEEecCCCHHHHHHHHHhhhC---eEEE----E-cC-eEEEEecCCCCCccccCCCcceEEEEEe---CCHHHHHHHHH
Q 044588 15 PQLLVEESKATNVVQFYKTTSG---AQLE----I-AG-STFLVSNFSNDSAAAKNMGIGCVLCLEI---DDVEAALAKAM 82 (117)
Q Consensus 15 p~L~v~~~D~~~a~~FY~~~fG---~~l~----~-~~-~~l~~~~~~~~g~~~~~~~~~~~l~l~v---~dvd~~~~~~~ 82 (117)
.-|.|+ |+++|++||+++|| .+.. . ++ ..+.+..... ... ... ...++++.| +|+|+.++++.
T Consensus 11 v~l~V~--Dle~s~~FY~~vlg~lg~~~~~~~~~~~g~~~l~l~~~~~-~~~-~~~-g~~h~af~v~~~~dvd~~~~~l~ 85 (128)
T PRK06724 11 IEFWVA--NLEESISFYDMLFSIIGWRKLNEVAYSTGESEIYFKEVDE-EIV-RTL-GPRHICYQAINRKVVDEVAEFLS 85 (128)
T ss_pred EEEEeC--CHHHHHHHHHHHHhhCCcEEeeeEeeeCCCeeEEEecCCc-ccc-CCC-CceeEEEecCChHHHHHHHHHHH
Confidence 345666 99999999999885 2221 2 22 2343332111 111 111 345788876 79999999999
Q ss_pred hCCCee------------eceEEEEECCCCCeEEEecc
Q 044588 83 SGGVWA------------TGRVGKVKDPCGFTWLIYSP 108 (117)
Q Consensus 83 ~~G~~v------------g~r~~~v~DP~G~~w~l~~~ 108 (117)
++|+++ |.+..+|+||+||.|+|...
T Consensus 86 ~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 123 (128)
T PRK06724 86 STKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYT 123 (128)
T ss_pred HCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeC
Confidence 999986 12556899999999999866
No 41
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.38 E-value=1.1e-11 Score=82.04 Aligned_cols=91 Identities=16% Similarity=0.187 Sum_probs=62.2
Q ss_pred EEEecCCCHHHHHHHHHhhhCeEEE----------EcCeEEEEecCCCCCccccCCCcceEEEEEeC--CHHHHHHHHHh
Q 044588 16 QLLVEESKATNVVQFYKTTSGAQLE----------IAGSTFLVSNFSNDSAAAKNMGIGCVLCLEID--DVEAALAKAMS 83 (117)
Q Consensus 16 ~L~v~~~D~~~a~~FY~~~fG~~l~----------~~~~~l~~~~~~~~g~~~~~~~~~~~l~l~v~--dvd~~~~~~~~ 83 (117)
.|.|+ |++++.+||+++||.++. .++..+.+... +........+...+++|.++ |++++++++.+
T Consensus 5 ~l~V~--Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~l~~~-~~~~~~~~~~~~~hiaf~v~~~dld~~~~~l~~ 81 (131)
T cd08363 5 TFSVS--NLDKSISFYKHVFMEKLLVLGEKTAYFTIGGTWLALNEE-PDIPRNEIRQSYTHIAFTIEDSEFDAFYTRLKE 81 (131)
T ss_pred EEEEC--CHHHHHHHHHHhhCCEEeccCCccceEeeCceEEEEEcc-CCCCcCCcCccceEEEEEecHHHHHHHHHHHHH
Confidence 46677 999999999999995443 23333333221 10000011112346777766 59999999999
Q ss_pred CCCee---------eceEEEEECCCCCeEEEeccc
Q 044588 84 GGVWA---------TGRVGKVKDPCGFTWLIYSPV 109 (117)
Q Consensus 84 ~G~~v---------g~r~~~v~DP~G~~w~l~~~~ 109 (117)
+|+++ +.+..+++||+||.|+|.+..
T Consensus 82 ~G~~~~~~~~~~~~~~~~~~f~DPdG~~iEl~~~~ 116 (131)
T cd08363 82 AGVNILPGRKRDVRDRKSIYFTDPDGHKLEVHTGT 116 (131)
T ss_pred cCCcccCCCccccCcceEEEEECCCCCEEEEecCc
Confidence 99876 356789999999999999865
No 42
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.38 E-value=2.2e-11 Score=82.22 Aligned_cols=95 Identities=16% Similarity=0.114 Sum_probs=64.3
Q ss_pred eEEEEecCCCHHHHHHHHHhhhCeEEEE--c--Ce--EEEEec--CCC-C----------CccccCCCcceEEEEEeCCH
Q 044588 14 KPQLLVEESKATNVVQFYKTTSGAQLEI--A--GS--TFLVSN--FSN-D----------SAAAKNMGIGCVLCLEIDDV 74 (117)
Q Consensus 14 ~p~L~v~~~D~~~a~~FY~~~fG~~l~~--~--~~--~l~~~~--~~~-~----------g~~~~~~~~~~~l~l~v~dv 74 (117)
...|.+. |+++|.+||+++||.++.. . +. .+.+.. ... . +.+........+++|.|+|+
T Consensus 20 hv~l~v~--Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~hi~f~v~dl 97 (150)
T TIGR00068 20 HTMLRVG--DLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYGDETSAAVIELTHNWGTEKYDLGNGFGHIAIGVDDV 97 (150)
T ss_pred EEEEEec--CHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCCCCCCccEEEEeecCCCCcccCCCceeEEEEecCCH
Confidence 5566677 9999999999999966532 1 11 121111 000 0 00001111235799999999
Q ss_pred HHHHHHHHhCCCee---------e-ceEEEEECCCCCeEEEecccC
Q 044588 75 EAALAKAMSGGVWA---------T-GRVGKVKDPCGFTWLIYSPVK 110 (117)
Q Consensus 75 d~~~~~~~~~G~~v---------g-~r~~~v~DP~G~~w~l~~~~~ 110 (117)
+++++++.++|+++ + .+.++|+||+|+.|+|.++..
T Consensus 98 d~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~ 143 (150)
T TIGR00068 98 YKACERVRALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRKS 143 (150)
T ss_pred HHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEECCc
Confidence 99999999999876 1 356789999999999998764
No 43
>PLN02367 lactoylglutathione lyase
Probab=99.38 E-value=3.7e-11 Score=87.16 Aligned_cols=46 Identities=24% Similarity=0.242 Sum_probs=41.0
Q ss_pred eEEEEEeCCHHHHHHHHHhCCCee--------eceEEEEECCCCCeEEEecccC
Q 044588 65 CVLCLEIDDVEAALAKAMSGGVWA--------TGRVGKVKDPCGFTWLIYSPVK 110 (117)
Q Consensus 65 ~~l~l~v~dvd~~~~~~~~~G~~v--------g~r~~~v~DP~G~~w~l~~~~~ 110 (117)
.+|+|.|+|++++++++.++|+++ +.+.++++||+||.|+|++...
T Consensus 171 ~HIaf~VdDVdaa~erL~a~Gv~~v~~P~~g~~~riaFIkDPDGn~IEL~e~~~ 224 (233)
T PLN02367 171 GHIGITVDDVYKACERFEELGVEFVKKPNDGKMKGIAFIKDPDGYWIEIFDLKT 224 (233)
T ss_pred eEEEEEcCCHHHHHHHHHHCCCEEEeCCccCCceEEEEEECCCCCEEEEEeccc
Confidence 489999999999999999999987 2468899999999999998653
No 44
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.37 E-value=1.8e-11 Score=78.82 Aligned_cols=89 Identities=15% Similarity=0.122 Sum_probs=57.8
Q ss_pred EEEEecCCCHHHHHHHHHhhhCeEEE--E--------------c-CeEEEEecCCCCCcc--ccCCCcceEEEEEeC---
Q 044588 15 PQLLVEESKATNVVQFYKTTSGAQLE--I--------------A-GSTFLVSNFSNDSAA--AKNMGIGCVLCLEID--- 72 (117)
Q Consensus 15 p~L~v~~~D~~~a~~FY~~~fG~~l~--~--------------~-~~~l~~~~~~~~g~~--~~~~~~~~~l~l~v~--- 72 (117)
..|.|+ |++++++||+++||.+.. . + +..+.+......... ........+++|.|+
T Consensus 5 i~l~v~--dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~hi~f~v~~~~ 82 (125)
T cd07241 5 VAIWTK--DLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDDGARLELMTRPDIAPSPNEGERTGWAHLAFSVGSKE 82 (125)
T ss_pred EEEEec--CHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCCCcEEEEEcCcccCCCcccCCCCceEEEEEECCCHH
Confidence 456777 999999999999995431 1 1 111222211000000 011112357999995
Q ss_pred CHHHHHHHHHhCCCee---------eceEEEEECCCCCeEEE
Q 044588 73 DVEAALAKAMSGGVWA---------TGRVGKVKDPCGFTWLI 105 (117)
Q Consensus 73 dvd~~~~~~~~~G~~v---------g~r~~~v~DP~G~~w~l 105 (117)
|+++.++++.++|+++ |.+.++++||+||.|+|
T Consensus 83 ~v~~~~~~l~~~g~~~~~~~~~~~~g~~~~~~~DPdG~~iE~ 124 (125)
T cd07241 83 AVDELTERLRADGYLIIGEPRTTGDGYYESVILDPEGNRIEI 124 (125)
T ss_pred HHHHHHHHHHHCCCEEEeCceecCCCeEEEEEECCCCCEEEe
Confidence 5899999999999987 23446799999999987
No 45
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.35 E-value=7.4e-11 Score=76.36 Aligned_cols=94 Identities=19% Similarity=0.204 Sum_probs=62.4
Q ss_pred EEEEecCCCHHHHHHHHHhhhCeEEEEcC-eE-----------EEEecCCCCCcc-ccCCCcceEEEEEeC---CHHHHH
Q 044588 15 PQLLVEESKATNVVQFYKTTSGAQLEIAG-ST-----------FLVSNFSNDSAA-AKNMGIGCVLCLEID---DVEAAL 78 (117)
Q Consensus 15 p~L~v~~~D~~~a~~FY~~~fG~~l~~~~-~~-----------l~~~~~~~~g~~-~~~~~~~~~l~l~v~---dvd~~~ 78 (117)
..|.++ |++++.+||+++||.++...+ .. |.+... +.... ........++.|.|+ ++++.+
T Consensus 6 i~l~v~--d~~~~~~Fy~~~lG~~~~~~~~~~~~l~~~~~~~~l~l~~~-~~~~~~~~~~~~~~hi~f~v~~~~~v~~~~ 82 (125)
T cd07255 6 VTLRVA--DLERSLAFYQDVLGLEVLERTDSTAVLGTGGKRPLLVLEED-PDAPPAPPGATGLYHFAILLPSRADLAAAL 82 (125)
T ss_pred EEEEEC--CHHHHHHHHHhccCcEEEEcCCCEEEEecCCCeEEEEEEeC-CCCCcccCCCCcEEEEEEECCCHHHHHHHH
Confidence 356666 999999999999995554321 11 222111 11100 111113357888886 589999
Q ss_pred HHHHhCCCee-------eceEEEEECCCCCeEEEecccCC
Q 044588 79 AKAMSGGVWA-------TGRVGKVKDPCGFTWLIYSPVKK 111 (117)
Q Consensus 79 ~~~~~~G~~v-------g~r~~~v~DP~G~~w~l~~~~~~ 111 (117)
+++.++|+++ ..+.++++||+||.|+|.+..+.
T Consensus 83 ~~l~~~g~~~~~~~~~~~~~~~~~~DPdG~~iEi~~~~~~ 122 (125)
T cd07255 83 RRLIELGIPLVGASDHLVSEALYLSDPEGNGIEIYADRPR 122 (125)
T ss_pred HHHHHcCCceeccccccceeEEEEECCCCCEEEEEEecCc
Confidence 9999999877 12567899999999999876543
No 46
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.33 E-value=5.3e-11 Score=77.93 Aligned_cols=94 Identities=13% Similarity=0.072 Sum_probs=61.6
Q ss_pred EEEEecCCCHHHHHHHHHhhhCeEEEEc-CeEEEEecC-CCCCcc-ccCCCcceEEEEEeCC---HHHHHHHHHhCCCee
Q 044588 15 PQLLVEESKATNVVQFYKTTSGAQLEIA-GSTFLVSNF-SNDSAA-AKNMGIGCVLCLEIDD---VEAALAKAMSGGVWA 88 (117)
Q Consensus 15 p~L~v~~~D~~~a~~FY~~~fG~~l~~~-~~~l~~~~~-~~~g~~-~~~~~~~~~l~l~v~d---vd~~~~~~~~~G~~v 88 (117)
..|.|+ |++++.+||+++||.+.... +....+... ...... ........+++|.|+| ++++++++.++|.++
T Consensus 10 v~l~v~--d~~~s~~FY~~vLG~~~~~~~~~~~~l~~~~~~~~i~l~~~~~~~~~iaf~v~~~~dv~~~~~~l~~~G~~~ 87 (124)
T cd08361 10 VRLGTR--DLAGATRFATDILGLQVAERTAKATYFRSDARDHTLVYIEGDPAEQASGFELRDDDALESAATELEQYGHEV 87 (124)
T ss_pred EEEeeC--CHHHHHHHHHhccCceeccCCCCeEEEEcCCccEEEEEEeCCCceEEEEEEECCHHHHHHHHHHHHHcCCce
Confidence 445555 99999999999999655332 222222211 110000 0001134578888874 999999999999876
Q ss_pred ------------eceEEEEECCCCCeEEEecccC
Q 044588 89 ------------TGRVGKVKDPCGFTWLIYSPVK 110 (117)
Q Consensus 89 ------------g~r~~~v~DP~G~~w~l~~~~~ 110 (117)
+.++.+++||+||.|++.....
T Consensus 88 ~~~~~~~~~~~~~~~~~~f~DPdG~~iE~~~~~~ 121 (124)
T cd08361 88 RRGTAEECELRKVKAFIAFRDPSGNSIELVVRPS 121 (124)
T ss_pred EEcCHHHhhcCCcceEEEEECcCCCEEEEEEeee
Confidence 1346799999999999986543
No 47
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.33 E-value=3.2e-11 Score=77.35 Aligned_cols=91 Identities=16% Similarity=0.098 Sum_probs=60.0
Q ss_pred EEEecCCCHHHHHHHHHhhhCeEEEEcCeEEEEec-CCCC--C---ccccCCCcceEEEEEeCCHHHHHHHHHhCCCee-
Q 044588 16 QLLVEESKATNVVQFYKTTSGAQLEIAGSTFLVSN-FSND--S---AAAKNMGIGCVLCLEIDDVEAALAKAMSGGVWA- 88 (117)
Q Consensus 16 ~L~v~~~D~~~a~~FY~~~fG~~l~~~~~~l~~~~-~~~~--g---~~~~~~~~~~~l~l~v~dvd~~~~~~~~~G~~v- 88 (117)
.|.++ |++++.+||+ .||.+....+..+.+.. .... . ...........+.+.++|++++++++.++|+++
T Consensus 7 ~l~v~--d~~~s~~FY~-~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~Gi~~~ 83 (112)
T cd08344 7 ALEVP--DLEVARRFYE-AFGLDVREEGDGLELRTAGNDHRWARLLEGARKRLAYLSFGIFEDDFAAFARHLEAAGVALA 83 (112)
T ss_pred EEecC--CHHHHHHHHH-HhCCcEEeecCceEEEecCCCceEEEeecCCCCceeeEEEEeEhhhHHHHHHHHHHcCCcee
Confidence 34555 9999999997 69966543332222211 1010 0 000011123556667789999999999999987
Q ss_pred ------eceEEEEECCCCCeEEEeccc
Q 044588 89 ------TGRVGKVKDPCGFTWLIYSPV 109 (117)
Q Consensus 89 ------g~r~~~v~DP~G~~w~l~~~~ 109 (117)
+.+.++++||+||.|+|....
T Consensus 84 ~~~~~~~~~~~~~~DP~Gn~iel~~~~ 110 (112)
T cd08344 84 AAPPGADPDGVWFRDPDGNLLQVKVAE 110 (112)
T ss_pred cCCCcCCCCEEEEECCCCCEEEEecCC
Confidence 346789999999999998654
No 48
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.33 E-value=4.1e-11 Score=77.04 Aligned_cols=93 Identities=16% Similarity=0.140 Sum_probs=62.8
Q ss_pred EEEecCCCHHHHHHHHHhhhCeEEEEc-CeEEEEecCCCCCc----cccCCCcceEEEEEe---CCHHHHHHHHHhCCCe
Q 044588 16 QLLVEESKATNVVQFYKTTSGAQLEIA-GSTFLVSNFSNDSA----AAKNMGIGCVLCLEI---DDVEAALAKAMSGGVW 87 (117)
Q Consensus 16 ~L~v~~~D~~~a~~FY~~~fG~~l~~~-~~~l~~~~~~~~g~----~~~~~~~~~~l~l~v---~dvd~~~~~~~~~G~~ 87 (117)
.|.++ |.+++++||+++||.+.... +....+........ .......-.++.+.+ +++++.++++.++|++
T Consensus 8 ~l~v~--d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~l~~~G~~ 85 (120)
T cd08362 8 GLGVP--DLAAAAAFYREVWGLSVVAEDDGIVYLRATGSEHHILRLRRSDRNRLDVVSFSVASRADVDALARQVAARGGT 85 (120)
T ss_pred EEecC--CHHHHHHHHHhCcCcEEEEecCCEEEEECCCCccEEEEeccCCCCCCceEEEEeCCHHHHHHHHHHHHHcCCc
Confidence 55566 99999999999999765432 22333332111000 011111234788888 5789999999999997
Q ss_pred e-----------eceEEEEECCCCCeEEEecccC
Q 044588 88 A-----------TGRVGKVKDPCGFTWLIYSPVK 110 (117)
Q Consensus 88 v-----------g~r~~~v~DP~G~~w~l~~~~~ 110 (117)
+ +.+.++++||+||.++|++..+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~~~ 119 (120)
T cd08362 86 VLSEPGATDDPGGGYGFRFFDPDGRLIEFSADVE 119 (120)
T ss_pred eecCCcccCCCCCceEEEEECCCCCEEEEEeccc
Confidence 6 2467899999999999987653
No 49
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.33 E-value=1.2e-10 Score=81.97 Aligned_cols=45 Identities=24% Similarity=0.236 Sum_probs=39.8
Q ss_pred eEEEEEeCCHHHHHHHHHhCCCee--------eceEEEEECCCCCeEEEeccc
Q 044588 65 CVLCLEIDDVEAALAKAMSGGVWA--------TGRVGKVKDPCGFTWLIYSPV 109 (117)
Q Consensus 65 ~~l~l~v~dvd~~~~~~~~~G~~v--------g~r~~~v~DP~G~~w~l~~~~ 109 (117)
.+|+|.|+|++++++++.+.|+++ +.++++++||+|+.|+|++..
T Consensus 123 ~Hlaf~V~Dvd~~~~~L~~~Gv~v~~~p~~~~~~~~~fi~DPdG~~IEl~e~~ 175 (185)
T PLN03042 123 GHIGITVDDVYKACERFEKLGVEFVKKPDDGKMKGLAFIKDPDGYWIEIFDLK 175 (185)
T ss_pred cEEEEEcCCHHHHHHHHHHCCCeEEeCCccCCceeEEEEECCCCCEEEEEECC
Confidence 479999999999999999999987 246789999999999999854
No 50
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.33 E-value=7.5e-11 Score=80.74 Aligned_cols=91 Identities=14% Similarity=0.085 Sum_probs=61.4
Q ss_pred EEEecCCCHHHHHHHHHhhhCeEEEEc-C-------------eEEEEecCCCCCccccCCCcc-eEEEEEeCC---HHHH
Q 044588 16 QLLVEESKATNVVQFYKTTSGAQLEIA-G-------------STFLVSNFSNDSAAAKNMGIG-CVLCLEIDD---VEAA 77 (117)
Q Consensus 16 ~L~v~~~D~~~a~~FY~~~fG~~l~~~-~-------------~~l~~~~~~~~g~~~~~~~~~-~~l~l~v~d---vd~~ 77 (117)
.|.|+ |++++.+||+++||.+.... . ..|.+..... .........+ .+|+|.|+| ++++
T Consensus 6 ~i~V~--Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~-~~~~~~~~~~l~Hiaf~v~d~~dvd~~ 82 (157)
T cd08347 6 TLTVR--DPEATAAFLTDVLGFREVGEEGDRVRLEEGGGGPGAVVDVLEEPD-QPRGRPGAGTVHHVAFRVPDDEELEAW 82 (157)
T ss_pred EEEeC--CHHHHHHHHHHhcCCEEEeeeCCEEEEEecCCCCCCEEEEEeCCC-CCCCcccCCceEEEEEECCCHHHHHHH
Confidence 46667 99999999999999544321 1 1222221100 0000111123 489999987 8999
Q ss_pred HHHHHhCCCee-------eceEEEEECCCCCeEEEeccc
Q 044588 78 LAKAMSGGVWA-------TGRVGKVKDPCGFTWLIYSPV 109 (117)
Q Consensus 78 ~~~~~~~G~~v-------g~r~~~v~DP~G~~w~l~~~~ 109 (117)
++++.++|.++ +.+..+++||+||.|+|.+..
T Consensus 83 ~~~L~~~Gv~~~~~~~~~~~~s~yf~DPdG~~iEl~~~~ 121 (157)
T cd08347 83 KERLEALGLPVSGIVDRFYFKSLYFREPGGILFEIATDG 121 (157)
T ss_pred HHHHHHCCCCcccccccccEEEEEEECCCCcEEEEEECC
Confidence 99999999877 235679999999999999864
No 51
>PLN02300 lactoylglutathione lyase
Probab=99.32 E-value=6.4e-11 Score=87.94 Aligned_cols=96 Identities=16% Similarity=0.217 Sum_probs=64.3
Q ss_pred eEEEEecCCCHHHHHHHHHhhhCeEEEE----cC--e-EEEEecC--CC---------CCccccCCCcc-eEEEEEeCCH
Q 044588 14 KPQLLVEESKATNVVQFYKTTSGAQLEI----AG--S-TFLVSNF--SN---------DSAAAKNMGIG-CVLCLEIDDV 74 (117)
Q Consensus 14 ~p~L~v~~~D~~~a~~FY~~~fG~~l~~----~~--~-~l~~~~~--~~---------~g~~~~~~~~~-~~l~l~v~dv 74 (117)
...|.|+ |++++++||+++||.++.. .+ . ...+... .. .+......+.+ .+++|.|+|+
T Consensus 27 Hv~l~V~--Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~~~g~~hia~~v~dv 104 (286)
T PLN02300 27 HVVYRVG--DLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSNFVVELTYNYGVDKYDIGTGFGHFGIAVEDV 104 (286)
T ss_pred EEEEEeC--CHHHHHHHHHHhcCCEEEEeeecCCCcEEEEEEccCCCCCceEEEEeccCCCCccccCCCccEEEEEeCCH
Confidence 4456677 9999999999999965521 11 1 1112110 00 01111111233 3899999999
Q ss_pred HHHHHHHHhCCCee---------e-ceEEEEECCCCCeEEEecccCC
Q 044588 75 EAALAKAMSGGVWA---------T-GRVGKVKDPCGFTWLIYSPVKK 111 (117)
Q Consensus 75 d~~~~~~~~~G~~v---------g-~r~~~v~DP~G~~w~l~~~~~~ 111 (117)
++.++++.++|+++ | .++++++||+||.|+|.+....
T Consensus 105 d~~~~~l~~~G~~i~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~~~~ 151 (286)
T PLN02300 105 AKTVELVKAKGGKVTREPGPVKGGKSVIAFVKDPDGYKFELIQRGPT 151 (286)
T ss_pred HHHHHHHHHCCCeeecCCcccCCCceEEEEEECCCCCEEEEEeCCCC
Confidence 99999999999877 2 3567999999999999987543
No 52
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=99.32 E-value=1.6e-10 Score=75.97 Aligned_cols=95 Identities=17% Similarity=0.224 Sum_probs=62.7
Q ss_pred EEEecCCCHHHHHHHHHhhhCeEEEEc-C--eEEEEecC--CC--------CCccccCCCcc-eEEEEEeCCHH---HHH
Q 044588 16 QLLVEESKATNVVQFYKTTSGAQLEIA-G--STFLVSNF--SN--------DSAAAKNMGIG-CVLCLEIDDVE---AAL 78 (117)
Q Consensus 16 ~L~v~~~D~~~a~~FY~~~fG~~l~~~-~--~~l~~~~~--~~--------~g~~~~~~~~~-~~l~l~v~dvd---~~~ 78 (117)
.|.++ |++++++||+++||.++... + ....+... .. ..........+ .+++|.|+|++ +.+
T Consensus 6 ~l~v~--D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~~~~~v~~~~ 83 (134)
T cd08348 6 VLYVR--DLEAMVRFYRDVLGFTVTDRGPLGGLVFLSRDPDEHHQIALITGRPAAPPPGPAGLNHIAFEVDSLDDLRDLY 83 (134)
T ss_pred EEEec--CHHHHHHHHHHhcCCEEEeeccCCcEEEEEecCCCceEEEEEecCCCCCCCCCCCceEEEEEeCCHHHHHHHH
Confidence 45666 99999999999999654322 1 22222211 00 00000011123 46889988655 688
Q ss_pred HHHHhCCCee-------eceEEEEECCCCCeEEEecccCCC
Q 044588 79 AKAMSGGVWA-------TGRVGKVKDPCGFTWLIYSPVKKC 112 (117)
Q Consensus 79 ~~~~~~G~~v-------g~r~~~v~DP~G~~w~l~~~~~~~ 112 (117)
+++.++|+++ +.+.++++||+||.|+|.+..++.
T Consensus 84 ~~l~~~G~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~~~~ 124 (134)
T cd08348 84 ERLRAAGITPVWPVDHGNAWSIYFRDPDGNRLELFVDTPWY 124 (134)
T ss_pred HHHHHCCCCccccCCCCceeEEEEECCCCCEEEEEEcCCCC
Confidence 9999999877 357789999999999999877653
No 53
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.31 E-value=1.2e-10 Score=75.59 Aligned_cols=93 Identities=12% Similarity=0.022 Sum_probs=61.5
Q ss_pred EEEEecCCCHHHHHHHHHhhhCeEEEEc--CeEEEEecC-CCCC--ccccCCCcceEEEEEeC---CHHHHHHHHHhCCC
Q 044588 15 PQLLVEESKATNVVQFYKTTSGAQLEIA--GSTFLVSNF-SNDS--AAAKNMGIGCVLCLEID---DVEAALAKAMSGGV 86 (117)
Q Consensus 15 p~L~v~~~D~~~a~~FY~~~fG~~l~~~--~~~l~~~~~-~~~g--~~~~~~~~~~~l~l~v~---dvd~~~~~~~~~G~ 86 (117)
..|.|+ |+++|.+||+++||.+.... +....+... .... ..........++.+.++ |+++.++++.++|+
T Consensus 6 v~l~v~--Dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~f~v~~~~dl~~~~~~l~~~Gv 83 (120)
T cd07252 6 LGVESS--DLDAWRRFATDVLGLQVGDRPEDGALYLRMDDRAWRIAVHPGEADDLAYAGWEVADEAALDALAARLRAAGV 83 (120)
T ss_pred EEEEeC--CHHHHHHHHHhccCceeccCCCCCeEEEEccCCceEEEEEeCCCCceeEEEEEECCHHHHHHHHHHHHHcCC
Confidence 456677 99999999999999655322 222222211 1100 00011112346778876 58999999999999
Q ss_pred ee------------eceEEEEECCCCCeEEEeccc
Q 044588 87 WA------------TGRVGKVKDPCGFTWLIYSPV 109 (117)
Q Consensus 87 ~v------------g~r~~~v~DP~G~~w~l~~~~ 109 (117)
++ +.+..+++||+||.|++....
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 118 (120)
T cd07252 84 AVEEGSAELAAERGVEGLIRFADPDGNRHELFWGP 118 (120)
T ss_pred eEEEcCHHHHhhCCCcEEEEEECCCCCEEEEEecc
Confidence 87 126789999999999998654
No 54
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.31 E-value=8.9e-11 Score=77.31 Aligned_cols=94 Identities=12% Similarity=0.132 Sum_probs=63.1
Q ss_pred EEEecCCCHHHHHHHHHhhhCeEEEEc-C-----eEEEEecCCC-C--CccccC-CCcceEEEEEeCCHH---HHHHHHH
Q 044588 16 QLLVEESKATNVVQFYKTTSGAQLEIA-G-----STFLVSNFSN-D--SAAAKN-MGIGCVLCLEIDDVE---AALAKAM 82 (117)
Q Consensus 16 ~L~v~~~D~~~a~~FY~~~fG~~l~~~-~-----~~l~~~~~~~-~--g~~~~~-~~~~~~l~l~v~dvd---~~~~~~~ 82 (117)
.|.|+ |+++|++||+++||.++... + ....+..... . ...... .....+++|.|+|++ +.++++.
T Consensus 4 ~l~V~--dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~hl~~~v~d~~~~~~~~~~l~ 81 (131)
T cd08343 4 VLRTP--DVAATAAFYTEVLGFRVSDRVGDPGVDAAAFLRCDEDHHDLALFPGPERPGLHHVAFEVESLDDILRAADRLA 81 (131)
T ss_pred EEEcC--CHHHHHHHHHhcCCCEEEEEEccCCceeEEEEEcCCCcceEEEEcCCCCCCeeEEEEEcCCHHHHHHHHHHHH
Confidence 45666 99999999999999665322 1 1222222111 0 000111 223457899998774 7899999
Q ss_pred hCCCee----------eceEEEEECCCCCeEEEecccCC
Q 044588 83 SGGVWA----------TGRVGKVKDPCGFTWLIYSPVKK 111 (117)
Q Consensus 83 ~~G~~v----------g~r~~~v~DP~G~~w~l~~~~~~ 111 (117)
++|+++ +.++++++||+|+.|+|.+..+.
T Consensus 82 ~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~~ 120 (131)
T cd08343 82 ANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAEMYR 120 (131)
T ss_pred HcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcCCcc
Confidence 999987 24678999999999999987654
No 55
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=99.30 E-value=1e-10 Score=72.51 Aligned_cols=87 Identities=28% Similarity=0.364 Sum_probs=59.7
Q ss_pred EEecCCCHHHHHHHHHhhhCeEEEEcC----eEEE-EecCCC----CCccc-c---CCCcceEEEEEeCCHHHHHHHHHh
Q 044588 17 LLVEESKATNVVQFYKTTSGAQLEIAG----STFL-VSNFSN----DSAAA-K---NMGIGCVLCLEIDDVEAALAKAMS 83 (117)
Q Consensus 17 L~v~~~D~~~a~~FY~~~fG~~l~~~~----~~l~-~~~~~~----~g~~~-~---~~~~~~~l~l~v~dvd~~~~~~~~ 83 (117)
|.++ |.+++.+||+++||.+..... .... +..... ...+. . ......++++.++|+++.++++.+
T Consensus 4 i~~~--d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~ 81 (112)
T cd06587 4 LTVS--DLEAAVAFYEEVLGFEVLFRNGNGGAEFAVLGLGGTRLELFEGDEPAPAPSGGGGVHLAFEVDDVDAAYERLKA 81 (112)
T ss_pred eeeC--CHHHHHHHHHhccCCEEEEeeccCCEEEEEEecCCceEEEecCCCCCCcccCCCeeEEEEECCCHHHHHHHHHH
Confidence 4555 999999999999995543321 1222 211100 00000 0 122456999999999999999999
Q ss_pred CCCee---------eceEEEEECCCCCeEEE
Q 044588 84 GGVWA---------TGRVGKVKDPCGFTWLI 105 (117)
Q Consensus 84 ~G~~v---------g~r~~~v~DP~G~~w~l 105 (117)
+|+.+ +.+..+++||+|+.|+|
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~~~Dp~G~~~~~ 112 (112)
T cd06587 82 AGVEVLGEPREEPWGGRVAYFRDPDGNLIEL 112 (112)
T ss_pred cCCcccCCCcCCCCCcEEEEEECCCCcEEeC
Confidence 99877 35788999999999985
No 56
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.30 E-value=1.5e-10 Score=75.00 Aligned_cols=94 Identities=18% Similarity=0.156 Sum_probs=63.4
Q ss_pred eEEEEecCCCHHHHHHHHHhhhCeEEEEc--CeEEEEec--CCC-CCc--cccCCCcceEEEEEeC---CHHHHHHHHHh
Q 044588 14 KPQLLVEESKATNVVQFYKTTSGAQLEIA--GSTFLVSN--FSN-DSA--AAKNMGIGCVLCLEID---DVEAALAKAMS 83 (117)
Q Consensus 14 ~p~L~v~~~D~~~a~~FY~~~fG~~l~~~--~~~l~~~~--~~~-~g~--~~~~~~~~~~l~l~v~---dvd~~~~~~~~ 83 (117)
...|.|+ |+++|.+||+++||.++... +....+.. ... ... .........++++.++ |++++++++.+
T Consensus 7 hv~l~v~--Dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~hiaf~v~~~~dv~~~~~~l~~ 84 (122)
T cd07265 7 HVQLRVL--DLEEAIKHYREVLGLDEVGRDDQGRVYLKAWDEFDHHSIVLREADTAGLDFMGFKVLDDADLEKLEARLQA 84 (122)
T ss_pred EEEEEeC--CHHHHHHHHHhccCCEeeeecCCceEEEEccCCCcccEEEeccCCCCCeeEEEEEeCCHHHHHHHHHHHHH
Confidence 3467777 99999999999999765432 22333321 111 000 0111112347888886 88999999999
Q ss_pred CCCee---------e-ceEEEEECCCCCeEEEeccc
Q 044588 84 GGVWA---------T-GRVGKVKDPCGFTWLIYSPV 109 (117)
Q Consensus 84 ~G~~v---------g-~r~~~v~DP~G~~w~l~~~~ 109 (117)
+|+++ + .+..+++||+||.|+|.+..
T Consensus 85 ~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 120 (122)
T cd07265 85 YGVAVERIPAGELPGVGRRVRFQLPSGHTMELYADK 120 (122)
T ss_pred CCCcEEEcccCCCCCCceEEEEECCCCCEEEEEEec
Confidence 99876 1 35789999999999998754
No 57
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.28 E-value=1.4e-10 Score=76.62 Aligned_cols=88 Identities=15% Similarity=0.089 Sum_probs=60.9
Q ss_pred EEEEecCCCHHHHHHHHHhhhCeEEEEc-----------------CeEEEEecCCCCCccccCCCcceEEEEEeC--CHH
Q 044588 15 PQLLVEESKATNVVQFYKTTSGAQLEIA-----------------GSTFLVSNFSNDSAAAKNMGIGCVLCLEID--DVE 75 (117)
Q Consensus 15 p~L~v~~~D~~~a~~FY~~~fG~~l~~~-----------------~~~l~~~~~~~~g~~~~~~~~~~~l~l~v~--dvd 75 (117)
..|.|+ |++++++||+++||...... +..+.+... .. . ..+...++.|.|+ |++
T Consensus 8 v~l~V~--dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~---~~-~-~~~~~~Hiaf~v~~~~ld 80 (131)
T cd08364 8 ITLIVK--DLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFLIGGLWIAIMEG---DS-L-QERTYNHIAFKISDSDVD 80 (131)
T ss_pred EEEEeC--CHHHHHHHHHHHhCCeeEEecccccccccceeEEEcCCeEEEEecC---CC-C-CCCCceEEEEEcCHHHHH
Confidence 346666 99999999999999543221 111112111 11 1 1112347888887 799
Q ss_pred HHHHHHHhCCCee---------eceEEEEECCCCCeEEEeccc
Q 044588 76 AALAKAMSGGVWA---------TGRVGKVKDPCGFTWLIYSPV 109 (117)
Q Consensus 76 ~~~~~~~~~G~~v---------g~r~~~v~DP~G~~w~l~~~~ 109 (117)
++++++.++|..+ +++..+++||+||.|+|.+..
T Consensus 81 ~~~~~l~~~gv~~~~~~~~~~~~g~~~yf~DPdG~~iEl~~~~ 123 (131)
T cd08364 81 EYTERIKALGVEMKPPRPRVQGEGRSIYFYDFDNHLFELHTGT 123 (131)
T ss_pred HHHHHHHHCCCEEecCCccccCCceEEEEECCCCCEEEEecCC
Confidence 9999999999887 257889999999999998754
No 58
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.28 E-value=1.1e-10 Score=75.32 Aligned_cols=93 Identities=18% Similarity=0.223 Sum_probs=62.5
Q ss_pred EEEEecCCCHHHHHHHHHhhhCeEEEEc-CeEEEEecCC--C-C--CccccCCCcceEEEEEe---CCHHHHHHHHHhCC
Q 044588 15 PQLLVEESKATNVVQFYKTTSGAQLEIA-GSTFLVSNFS--N-D--SAAAKNMGIGCVLCLEI---DDVEAALAKAMSGG 85 (117)
Q Consensus 15 p~L~v~~~D~~~a~~FY~~~fG~~l~~~-~~~l~~~~~~--~-~--g~~~~~~~~~~~l~l~v---~dvd~~~~~~~~~G 85 (117)
..|.|+ |++++.+||+++||.++... +....+.... . . ...........++.+.| +|+++.++++.++|
T Consensus 8 i~l~v~--d~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hi~~~v~~~~dv~~~~~~l~~~g 85 (121)
T cd07266 8 VELRVT--DLEKSREFYVDVLGLVETEEDDDRIYLRGLEEFIHHSLVLTKAPVAGLGHIAFRVRSEEDLDKAEAFFQELG 85 (121)
T ss_pred EEEEcC--CHHHHHHHHHhccCCEEeccCCCeEEEEecCCCceEEEEEeeCCCCceeEEEEECCCHHHHHHHHHHHHHcC
Confidence 345566 99999999999999776533 2232222110 0 0 00011111345677877 58899999999999
Q ss_pred Cee---------e-ceEEEEECCCCCeEEEeccc
Q 044588 86 VWA---------T-GRVGKVKDPCGFTWLIYSPV 109 (117)
Q Consensus 86 ~~v---------g-~r~~~v~DP~G~~w~l~~~~ 109 (117)
.++ + .+.+++.||+||.|+++...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~~ 119 (121)
T cd07266 86 LPTEWVEAGEEPGQGRALRVEDPLGFPIEFYAEM 119 (121)
T ss_pred CCcccccCCcCCCCccEEEEECCCCCEEEEEecc
Confidence 876 2 46889999999999998654
No 59
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.26 E-value=2.2e-10 Score=73.71 Aligned_cols=90 Identities=17% Similarity=0.180 Sum_probs=59.4
Q ss_pred EEEEecCCCHHHHHHHHHhhhCeEEEEc----C----eEEEEecC------------CCCCcc-ccCCCc-ceEEEEEeC
Q 044588 15 PQLLVEESKATNVVQFYKTTSGAQLEIA----G----STFLVSNF------------SNDSAA-AKNMGI-GCVLCLEID 72 (117)
Q Consensus 15 p~L~v~~~D~~~a~~FY~~~fG~~l~~~----~----~~l~~~~~------------~~~g~~-~~~~~~-~~~l~l~v~ 72 (117)
..|.|+ |++++++||+++||.+.... + ..+.+... .+.... ...... -.+++|.++
T Consensus 5 v~l~v~--d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~hi~f~v~ 82 (126)
T cd08346 5 VTLITR--DAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPDAGPKGRRGPGQIHHIAFSVP 82 (126)
T ss_pred EEEEcC--ChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCCCCCCCCCCCCcEEEEEEEcC
Confidence 356677 99999999999999544311 1 11222211 000000 011112 248889887
Q ss_pred ---CHHHHHHHHHhCCCee-------eceEEEEECCCCCeEEEe
Q 044588 73 ---DVEAALAKAMSGGVWA-------TGRVGKVKDPCGFTWLIY 106 (117)
Q Consensus 73 ---dvd~~~~~~~~~G~~v-------g~r~~~v~DP~G~~w~l~ 106 (117)
|++++++++.++|+++ +.+.++++||+||.|+|.
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~DP~G~~iE~~ 126 (126)
T cd08346 83 SEASLDAWRERLRAAGVPVSGVVDHFGERSIYFEDPDGLRLELT 126 (126)
T ss_pred CHHHHHHHHHHHHHcCCcccceEeecceEEEEEECCCCCEEEeC
Confidence 5799999999999887 457889999999999974
No 60
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.26 E-value=2.1e-10 Score=73.25 Aligned_cols=91 Identities=21% Similarity=0.241 Sum_probs=61.9
Q ss_pred EEEecCCCHHHHHHHHHhhhCeEEEEc-CeEEEEecC--CCCC--ccccCCCcceEEEEEeC---CHHHHHHHHHhCCCe
Q 044588 16 QLLVEESKATNVVQFYKTTSGAQLEIA-GSTFLVSNF--SNDS--AAAKNMGIGCVLCLEID---DVEAALAKAMSGGVW 87 (117)
Q Consensus 16 ~L~v~~~D~~~a~~FY~~~fG~~l~~~-~~~l~~~~~--~~~g--~~~~~~~~~~~l~l~v~---dvd~~~~~~~~~G~~ 87 (117)
.|.++ |++++++||+++||.++... +....+... .... ..........++.|.|+ ++++.++++.++|++
T Consensus 7 ~l~v~--d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~v~~~~~~l~~~g~~ 84 (117)
T cd07240 7 ELEVP--DLERALEFYTDVLGLTVLDRDAGSVYLRCSEDDHHSLVLTEGDEPGVDALGFEVASEEDLEALAAHLEAAGVA 84 (117)
T ss_pred EEecC--CHHHHHHHHHhccCcEEEeecCCeEEEecCCCCcEEEEEEeCCCCCceeEEEEcCCHHHHHHHHHHHHHcCCc
Confidence 45566 99999999999999766543 222222211 1100 00111113457788886 788999999999988
Q ss_pred e---------eceEEEEECCCCCeEEEecc
Q 044588 88 A---------TGRVGKVKDPCGFTWLIYSP 108 (117)
Q Consensus 88 v---------g~r~~~v~DP~G~~w~l~~~ 108 (117)
+ +.+.++++||+||.|++...
T Consensus 85 ~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 114 (117)
T cd07240 85 PEEASDPEPGVGRGLRFQDPDGHLLELFVE 114 (117)
T ss_pred eEEcCccCCCCceEEEEECCCCCEEEEEEc
Confidence 7 34788999999999999865
No 61
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.25 E-value=2.2e-10 Score=77.26 Aligned_cols=94 Identities=17% Similarity=0.227 Sum_probs=61.9
Q ss_pred EEEecCCCHHHHHHHHHhhhCeEEE-EcC-eEEEEecCCC-CCcc--ccCCCcceEEEEEeCCHHHH---HHHHHhCCCe
Q 044588 16 QLLVEESKATNVVQFYKTTSGAQLE-IAG-STFLVSNFSN-DSAA--AKNMGIGCVLCLEIDDVEAA---LAKAMSGGVW 87 (117)
Q Consensus 16 ~L~v~~~D~~~a~~FY~~~fG~~l~-~~~-~~l~~~~~~~-~g~~--~~~~~~~~~l~l~v~dvd~~---~~~~~~~G~~ 87 (117)
.|.|+ |++++++||+++||.+.. ..+ ....+..... .... ....+...++.|.|+|++++ ++++.++|++
T Consensus 9 ~i~V~--Dle~s~~FY~~~LG~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~hiaf~v~d~~~l~~~~~~l~~~Gi~ 86 (144)
T cd07239 9 VLNSP--DVDKTVAFYEDVLGFRVSDWLGDQMAFLRCNSDHHSIAIARGPHPSLNHVAFEMPSIDEVMRGIGRMIDKGID 86 (144)
T ss_pred EEECC--CHHHHHHHHHhcCCCEEEEeeCCeEEEEECCCCcceEEEccCCCCceEEEEEECCCHHHHHHHHHHHHHcCCc
Confidence 45566 999999999999997653 222 2222221111 1000 11111334789999887766 4899999997
Q ss_pred e----------eceEEEEECCCCCeEEEecccCC
Q 044588 88 A----------TGRVGKVKDPCGFTWLIYSPVKK 111 (117)
Q Consensus 88 v----------g~r~~~v~DP~G~~w~l~~~~~~ 111 (117)
+ +.++.+++||+||.|+|++....
T Consensus 87 ~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~~~~ 120 (144)
T cd07239 87 ILWGPGRHGPGDNTFAYFLDPGGFVIEYTSELEQ 120 (144)
T ss_pred eeeCCcccCCCCCEEEEEECCCCcEEEeccCceE
Confidence 7 13567899999999999987644
No 62
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.25 E-value=1.8e-10 Score=74.56 Aligned_cols=90 Identities=18% Similarity=0.138 Sum_probs=58.1
Q ss_pred EEEecCCCHHHHHHHHHhhh---CeEEEEc--CeEEEEecC--CC-------CCccccCCCcceEEEEEeCC---HHHHH
Q 044588 16 QLLVEESKATNVVQFYKTTS---GAQLEIA--GSTFLVSNF--SN-------DSAAAKNMGIGCVLCLEIDD---VEAAL 78 (117)
Q Consensus 16 ~L~v~~~D~~~a~~FY~~~f---G~~l~~~--~~~l~~~~~--~~-------~g~~~~~~~~~~~l~l~v~d---vd~~~ 78 (117)
.|.|+ |.++|++||+++| |.+.... +..+.+... .. ........+...+++|.|+| +++++
T Consensus 5 ~l~v~--d~~~s~~FY~~~f~~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~hi~f~v~~~~~v~~~~ 82 (123)
T cd07262 5 TLGVN--DLERARAFYDAVLAPLGIKRVMEDGPGAVGYGKGGGGPDFWVTKPFDGEPATAGNGTHVAFAAPSREAVDAFH 82 (123)
T ss_pred EEecC--cHHHHHHHHHHHHhhcCceEEeecCCceeEeccCCCCceEEEeccccCCCCCCCCceEEEEECCCHHHHHHHH
Confidence 45666 9999999999995 6443322 223322221 00 00001112245789999986 78899
Q ss_pred HHHHhCCCee----------ec--eEEEEECCCCCeEEEec
Q 044588 79 AKAMSGGVWA----------TG--RVGKVKDPCGFTWLIYS 107 (117)
Q Consensus 79 ~~~~~~G~~v----------g~--r~~~v~DP~G~~w~l~~ 107 (117)
+++.++|+.+ |. +.++++||+||.|+|+.
T Consensus 83 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~~ 123 (123)
T cd07262 83 AAALAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAVC 123 (123)
T ss_pred HHHHHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEeC
Confidence 9999999876 11 24699999999999863
No 63
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.24 E-value=3.3e-10 Score=73.39 Aligned_cols=100 Identities=16% Similarity=0.225 Sum_probs=64.4
Q ss_pred CCCcce-eEEEEecCCCHHHHHHHHHhhhCeEEEEc-CeEEEEe-cCC-C-CCcc-ccCCCcc-eEEEEEeC---CHHHH
Q 044588 8 ANFMGM-KPQLLVEESKATNVVQFYKTTSGAQLEIA-GSTFLVS-NFS-N-DSAA-AKNMGIG-CVLCLEID---DVEAA 77 (117)
Q Consensus 8 ~~~~~~-~p~L~v~~~D~~~a~~FY~~~fG~~l~~~-~~~l~~~-~~~-~-~g~~-~~~~~~~-~~l~l~v~---dvd~~ 77 (117)
|..+++ ...|.|+ |++++.+||+++||.++... +....+. ... . .... ......+ .+++|.++ |++++
T Consensus 2 ~~i~~i~hv~l~v~--dl~~a~~FY~~~lG~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~h~af~v~~~~~v~~~ 79 (121)
T cd09013 2 FDIAHLAHVELLTP--KPEESLWFFTDVLGLEETGREGQSVYLRAWGDYEHHSLKLTESPEAGLGHIAWRASSPEALERR 79 (121)
T ss_pred CCccEeeEEEEEeC--CHHHHHHHHHhCcCCEEEeecCCeEEEEeccCCCccEEEEeeCCCCceEEEEEEcCCHHHHHHH
Confidence 444444 3355566 99999999999999665432 2223222 111 1 0000 0111123 47888886 68899
Q ss_pred HHHHHhCCCee--------eceEEEEECCCCCeEEEeccc
Q 044588 78 LAKAMSGGVWA--------TGRVGKVKDPCGFTWLIYSPV 109 (117)
Q Consensus 78 ~~~~~~~G~~v--------g~r~~~v~DP~G~~w~l~~~~ 109 (117)
++++.++|.++ +.+..+++||+||.|+|....
T Consensus 80 ~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~ 119 (121)
T cd09013 80 VAALEASGLGIGWIEGDPGHGKAYRFRSPDGHPMELYWEV 119 (121)
T ss_pred HHHHHHcCCccccccCCCCCcceEEEECCCCCEEEEEEec
Confidence 99999999876 245679999999999998643
No 64
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.23 E-value=5.2e-10 Score=71.88 Aligned_cols=92 Identities=11% Similarity=0.032 Sum_probs=60.6
Q ss_pred EEEecCCCHHHHHHHHHhhhCeEEEEc-CeEEEEec-CCC-CCc--cccCCCcceEEEEEeCCHHHHHHHHHhCCCee--
Q 044588 16 QLLVEESKATNVVQFYKTTSGAQLEIA-GSTFLVSN-FSN-DSA--AAKNMGIGCVLCLEIDDVEAALAKAMSGGVWA-- 88 (117)
Q Consensus 16 ~L~v~~~D~~~a~~FY~~~fG~~l~~~-~~~l~~~~-~~~-~g~--~~~~~~~~~~l~l~v~dvd~~~~~~~~~G~~v-- 88 (117)
.|.|+ |+++|.+||++ ||.+.... +....+.. ... .-. .....+.-.++.|.|+|.++..+.+.++|...
T Consensus 8 ~l~v~--Dl~~s~~FY~~-lGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~v~~~~~~~~~~~~~g~~~~~ 84 (113)
T cd07267 8 RFEHP--DLDKAERFLTD-FGLEVAARTDDELYYRGYGTDPFVYVARKGEKARFVGAAFEAASRADLEKAAALPGASVID 84 (113)
T ss_pred EEccC--CHHHHHHHHHH-cCCEEEEecCCeEEEecCCCccEEEEcccCCcCcccEEEEEECCHHHHHHHHHcCCCeeec
Confidence 34555 99999999999 89654322 22222221 111 000 00011123478999999999999888888865
Q ss_pred ------eceEEEEECCCCCeEEEecccC
Q 044588 89 ------TGRVGKVKDPCGFTWLIYSPVK 110 (117)
Q Consensus 89 ------g~r~~~v~DP~G~~w~l~~~~~ 110 (117)
+.+..+++||+||.|+|....+
T Consensus 85 ~~~~~~~~~~~~~~DPdG~~iEl~~~~~ 112 (113)
T cd07267 85 DLEAPGGGKRVTLTDPDGFPVELVYGQE 112 (113)
T ss_pred CCCCCCCceEEEEECCCCCEEEEEeccc
Confidence 4678899999999999986543
No 65
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.22 E-value=7.1e-10 Score=72.09 Aligned_cols=91 Identities=19% Similarity=0.202 Sum_probs=60.5
Q ss_pred EEEecCCCHHHHHHHHHhhh---CeEEEEc------------CeEEEEecCCCCCcc-ccCCCcc-eEEEEEeC---CHH
Q 044588 16 QLLVEESKATNVVQFYKTTS---GAQLEIA------------GSTFLVSNFSNDSAA-AKNMGIG-CVLCLEID---DVE 75 (117)
Q Consensus 16 ~L~v~~~D~~~a~~FY~~~f---G~~l~~~------------~~~l~~~~~~~~g~~-~~~~~~~-~~l~l~v~---dvd 75 (117)
.|.++ |++++.+||+++| |.++... +..+.+......... ....+.+ .++++.|+ |++
T Consensus 6 ~i~v~--d~~~~~~Fy~~~l~~~G~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~g~~hia~~v~~~~d~~ 83 (128)
T cd07242 6 ELTVR--DLERSRAFYDWLLGLLGFEEVKEWEDGRSWRAGDGGTYLVLQQADGESAGRHDRRNPGLHHLAFRAPSREAVD 83 (128)
T ss_pred EEEeC--CHHHHHHHHHHHHhhcCCEEEEeeccCceEEecCCceEEEEEecccCCCcccccCCcCeeEEEEEcCCHHHHH
Confidence 56666 9999999999999 9544321 122223221110010 0011133 47888886 588
Q ss_pred HHHHHHHhCCCee------------eceEEEEECCCCCeEEEecc
Q 044588 76 AALAKAMSGGVWA------------TGRVGKVKDPCGFTWLIYSP 108 (117)
Q Consensus 76 ~~~~~~~~~G~~v------------g~r~~~v~DP~G~~w~l~~~ 108 (117)
++++++.++|+++ +.+.++++||+|+.++|+.|
T Consensus 84 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~~ 128 (128)
T cd07242 84 ELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVAP 128 (128)
T ss_pred HHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEeC
Confidence 9999999999987 23577999999999999865
No 66
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=99.22 E-value=1.7e-10 Score=75.86 Aligned_cols=93 Identities=19% Similarity=0.228 Sum_probs=64.5
Q ss_pred ceeEEEEecCCCHHHHHHHHHhhhC------------eEEEEcC-eEEEEecCCC---C---CccccCCCcceEEEEEeC
Q 044588 12 GMKPQLLVEESKATNVVQFYKTTSG------------AQLEIAG-STFLVSNFSN---D---SAAAKNMGIGCVLCLEID 72 (117)
Q Consensus 12 ~~~p~L~v~~~D~~~a~~FY~~~fG------------~~l~~~~-~~l~~~~~~~---~---g~~~~~~~~~~~l~l~v~ 72 (117)
.+.-+|.|. |++++.+||+. +| +.+.+++ ..+||..... . .......++.+.++|.+.
T Consensus 4 mIFvNLPVk--DL~~S~~Fy~a-lGfk~Npq~sde~a~~mi~~~ni~vMLL~~~~fq~F~~~~i~dt~~s~evli~ls~~ 80 (133)
T COG3607 4 MIFVNLPVK--DLEASKAFYTA-LGFKFNPQFSDEDAACMIISDNIFVMLLEEARFQTFTKRQIADTTKSREVLISLSAG 80 (133)
T ss_pred EEEEecchh--hHHHHHHHHHH-hCcccCCCcccccceeEEEeccEEEEEeccHHhhhhcccccccccCCceEEEEeccC
Confidence 456778888 99999999997 56 3333443 3455543321 1 111112236688889875
Q ss_pred ---CHHHHHHHHHhCCCee-------eceEE-EEECCCCCeEEEec
Q 044588 73 ---DVEAALAKAMSGGVWA-------TGRVG-KVKDPCGFTWLIYS 107 (117)
Q Consensus 73 ---dvd~~~~~~~~~G~~v-------g~r~~-~v~DP~G~~w~l~~ 107 (117)
++|+..++++++|+.+ |..|+ .+.|||||.|++.-
T Consensus 81 s~eevd~~v~ka~eaGGk~~~~~~d~gfMYg~~fqDpDGh~wE~l~ 126 (133)
T COG3607 81 SREEVDELVDKALEAGGKPANEPQDEGFMYGRSFQDPDGHVWEFLW 126 (133)
T ss_pred cHHHHHHHHHHHHHcCCCCCCCccccccccceeeeCCCCCeEEEEE
Confidence 7889999999999988 44444 89999999999853
No 67
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.20 E-value=6.2e-10 Score=71.85 Aligned_cols=90 Identities=20% Similarity=0.264 Sum_probs=58.6
Q ss_pred EEEecCCCHHHHHHHHHhhhCeEEEE-----------------cCeEEEEecCCCCCccc----cCCCc-ceEEEEEeCC
Q 044588 16 QLLVEESKATNVVQFYKTTSGAQLEI-----------------AGSTFLVSNFSNDSAAA----KNMGI-GCVLCLEIDD 73 (117)
Q Consensus 16 ~L~v~~~D~~~a~~FY~~~fG~~l~~-----------------~~~~l~~~~~~~~g~~~----~~~~~-~~~l~l~v~d 73 (117)
.|.++ |++++.+||+++||.+... ++..+.+........+. ...+. ..+++|.|+|
T Consensus 5 ~l~v~--d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~g~~h~~f~v~d 82 (128)
T cd07249 5 GIAVP--DLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGLGNVQIELIEPLDDDSPIAKFLEKRGEGLHHIAFEVDD 82 (128)
T ss_pred EEEeC--CHHHHHHHHHHhhCCCCccccccCcccccEEEEEEcCCEEEEEEEECCCCCcHHHHHhcCCCceEEEEEEeCC
Confidence 46666 9999999999999933321 12223332221101110 01123 3579999999
Q ss_pred HHHHHHHHHhCCCee---------eceEEEEECCC---CCeEEEec
Q 044588 74 VEAALAKAMSGGVWA---------TGRVGKVKDPC---GFTWLIYS 107 (117)
Q Consensus 74 vd~~~~~~~~~G~~v---------g~r~~~v~DP~---G~~w~l~~ 107 (117)
++++++++.++|+++ +++.+.+.||+ |+.|+|++
T Consensus 83 ~~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~d~~~~~g~~iE~~~ 128 (128)
T cd07249 83 IDAALARLKAQGVRLLQEGPRIGAGGKRVAFLHPKDTGGVLIELVE 128 (128)
T ss_pred HHHHHHHHHHCCCeeeccCCCccCCCCEEEEEecCCCceEEEEecC
Confidence 999999999999987 34555555555 99999874
No 68
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.20 E-value=4e-10 Score=76.58 Aligned_cols=93 Identities=17% Similarity=0.103 Sum_probs=61.6
Q ss_pred EEEecCCCHHHHHHHHHhhhCeEEE----Ec--C-eEEEEe--cCC-C---C-Cc--cccCCCcceEEEEEeCCHHHHH-
Q 044588 16 QLLVEESKATNVVQFYKTTSGAQLE----IA--G-STFLVS--NFS-N---D-SA--AAKNMGIGCVLCLEIDDVEAAL- 78 (117)
Q Consensus 16 ~L~v~~~D~~~a~~FY~~~fG~~l~----~~--~-~~l~~~--~~~-~---~-g~--~~~~~~~~~~l~l~v~dvd~~~- 78 (117)
.|.|+ |+++|++||+++||.++. .. + ..+.+. +.. . . .. ...+.+.--+|+|.|+|++++.
T Consensus 6 ~l~V~--Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~g~~Hiaf~v~die~~~~ 83 (153)
T cd07257 6 VLEVP--DFAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLDRGEEYVDHHTLALAQGPESGVHHAAFEVHDFDAQGL 83 (153)
T ss_pred EEecC--CHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecCCCCCcccchHHHHhcCCCCceeEEEEEcCCHHHHHH
Confidence 45666 999999999999995542 11 1 122222 110 0 0 00 0111112358999999999885
Q ss_pred --HHHHhCCCee--e--------ceEEEEECCCCCeEEEecccC
Q 044588 79 --AKAMSGGVWA--T--------GRVGKVKDPCGFTWLIYSPVK 110 (117)
Q Consensus 79 --~~~~~~G~~v--g--------~r~~~v~DP~G~~w~l~~~~~ 110 (117)
++|.++|.++ + .++.+++||+||.|+|.....
T Consensus 84 ~~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~~~~ 127 (153)
T cd07257 84 GHDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYTDGD 127 (153)
T ss_pred HHHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEcCce
Confidence 9999999987 1 346799999999999987653
No 69
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.19 E-value=9.1e-10 Score=73.29 Aligned_cols=91 Identities=16% Similarity=0.272 Sum_probs=59.2
Q ss_pred eeEEEEecCCCHHHHHHHHHhhhCeEEEE----c------------Ce-E-EEEe--cC-CC--------CCccccCCCc
Q 044588 13 MKPQLLVEESKATNVVQFYKTTSGAQLEI----A------------GS-T-FLVS--NF-SN--------DSAAAKNMGI 63 (117)
Q Consensus 13 ~~p~L~v~~~D~~~a~~FY~~~fG~~l~~----~------------~~-~-l~~~--~~-~~--------~g~~~~~~~~ 63 (117)
+...|.|. |+++|++||+++||.++.. . +. . +++. +. .. .+......+.
T Consensus 4 ~Hv~irV~--DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~~~~~~~g~ 81 (127)
T cd08358 4 LHFVFKVG--NRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYGIGDYELGN 81 (127)
T ss_pred EEEEEEeC--CHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCCCCCCCCCC
Confidence 45678888 9999999999999965421 1 11 1 2221 11 10 0111112234
Q ss_pred ceEEEEEeCCHHHHHHHHHhCCCee---eceEEEEECCCCCeEEEec
Q 044588 64 GCVLCLEIDDVEAALAKAMSGGVWA---TGRVGKVKDPCGFTWLIYS 107 (117)
Q Consensus 64 ~~~l~l~v~dvd~~~~~~~~~G~~v---g~r~~~v~DP~G~~w~l~~ 107 (117)
+ ++.|.|++. .+.+++.+.|..+ ...+++++||+|+.++|..
T Consensus 82 ~-~~hlav~~~-d~~~~l~~~Gv~~~~~~~~~~fi~DPDG~~ie~~~ 126 (127)
T cd08358 82 D-FLGITIHSK-QAVSNAKKHNWPVTEVEDGVYEVKAPGGYKFYLID 126 (127)
T ss_pred C-EEEEEEECH-HHHHHHHHCCCceecCCCCEEEEECCCCCEEEEec
Confidence 4 677777777 4559999999888 2249999999999999863
No 70
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.17 E-value=1.1e-09 Score=72.39 Aligned_cols=93 Identities=14% Similarity=0.205 Sum_probs=60.2
Q ss_pred EEEecCCCHHHHHHHHHhhhCeEEEEc--CeEEEEecC--CC-CC---ccccCCCcc-eEEEEEeCCHHHHH---HHHHh
Q 044588 16 QLLVEESKATNVVQFYKTTSGAQLEIA--GSTFLVSNF--SN-DS---AAAKNMGIG-CVLCLEIDDVEAAL---AKAMS 83 (117)
Q Consensus 16 ~L~v~~~D~~~a~~FY~~~fG~~l~~~--~~~l~~~~~--~~-~g---~~~~~~~~~-~~l~l~v~dvd~~~---~~~~~ 83 (117)
.|.|+ |++++.+||+++||.++.-. .....+... .. .. ........+ .+|.|.|+|++++. +++.+
T Consensus 8 ~l~v~--dl~~s~~FY~~vlGl~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~g~~hiaf~v~d~~~~~~~~~~l~~ 85 (134)
T cd08360 8 VLFVP--DVEAAEAFYRDRLGFRVSDRFKGRGAFLRAAGGGDHHNLFLIKTPAPMAGFHHAAFEVGDIDEVMLGGNHMLR 85 (134)
T ss_pred EEEcC--CHHHHHHHHHHhcCCEEEEEecCcEEEEECCCCCCCcEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHHHH
Confidence 45666 99999999999999665321 112222111 00 00 000111133 48999999888665 69999
Q ss_pred CCCee----------eceEEEEECCCCCeEEEecccC
Q 044588 84 GGVWA----------TGRVGKVKDPCGFTWLIYSPVK 110 (117)
Q Consensus 84 ~G~~v----------g~r~~~v~DP~G~~w~l~~~~~ 110 (117)
+|.++ +.++.+++||+|+.++|.....
T Consensus 86 ~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~~~~ 122 (134)
T cd08360 86 AGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGADMD 122 (134)
T ss_pred cCCccccCCCCcCCCccEEEEEECCCCCEEEEEcccc
Confidence 99986 1245799999999999997543
No 71
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.15 E-value=1.6e-09 Score=73.70 Aligned_cols=94 Identities=18% Similarity=0.113 Sum_probs=61.7
Q ss_pred EEEEecCCCHHHHHHHHHhhhCeEEEE----c-----CeEEEEe--cCCCCCcc--ccCCCcc-eEEEEEeCCHH---HH
Q 044588 15 PQLLVEESKATNVVQFYKTTSGAQLEI----A-----GSTFLVS--NFSNDSAA--AKNMGIG-CVLCLEIDDVE---AA 77 (117)
Q Consensus 15 p~L~v~~~D~~~a~~FY~~~fG~~l~~----~-----~~~l~~~--~~~~~g~~--~~~~~~~-~~l~l~v~dvd---~~ 77 (117)
-.|.|+ |++++++||+++||.++.. . +..+.+. +....... ......+ .+|+|.|+|++ ++
T Consensus 13 i~l~v~--Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~g~~Hiaf~V~d~~~l~~~ 90 (154)
T cd07237 13 VVLATP--DPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGRHHSLALAEGPGPKRIHHLMLEVTSLDDVGRA 90 (154)
T ss_pred EEEEeC--CHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCCCCCEEEEcCCCCceeEEEEEEcCCHHHHHHH
Confidence 355666 9999999999999966532 1 1123222 21111110 1111123 48999997654 68
Q ss_pred HHHHHhCCCee----------eceEEEEECCCCCeEEEecccC
Q 044588 78 LAKAMSGGVWA----------TGRVGKVKDPCGFTWLIYSPVK 110 (117)
Q Consensus 78 ~~~~~~~G~~v----------g~r~~~v~DP~G~~w~l~~~~~ 110 (117)
++++.++|.++ +.+.++++||+|+.|+|.....
T Consensus 91 ~~~L~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~~~~ 133 (154)
T cd07237 91 YDRVRARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGWGGR 133 (154)
T ss_pred HHHHHHcCCceeccCCccCCCCcEEEEEECCCCcEEEeccCce
Confidence 99999999987 2367889999999999987643
No 72
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.14 E-value=1.8e-09 Score=72.66 Aligned_cols=96 Identities=13% Similarity=-0.008 Sum_probs=63.4
Q ss_pred EEEecCCCHHHHHHHHHhhhCeEEEE--cCeEEEEecC-CCCCc--cc-cCCCcc-eEEEEEeCC---HHHHHHHHHhCC
Q 044588 16 QLLVEESKATNVVQFYKTTSGAQLEI--AGSTFLVSNF-SNDSA--AA-KNMGIG-CVLCLEIDD---VEAALAKAMSGG 85 (117)
Q Consensus 16 ~L~v~~~D~~~a~~FY~~~fG~~l~~--~~~~l~~~~~-~~~g~--~~-~~~~~~-~~l~l~v~d---vd~~~~~~~~~G 85 (117)
.|.|+ |++++.+||+++||.++.- ++..+.+... ....+ .. +....+ -+++|.|+| ++++++++.++|
T Consensus 4 ~l~V~--Dle~s~~Fy~~vLG~~~~~~~~~~~~~l~~~~~~~~h~~~~~~~~~~gl~Hiaf~v~~~~~v~~~~~~l~~~G 81 (141)
T cd07258 4 VIGSE--NFEASRDSLVEDFGFRVSDLIEDRIVFMRCHPNPFHHTFAVGPASSSHFHHVNFMVTDIDDIGKALYRIKAHD 81 (141)
T ss_pred EEecC--CHHHHHHHHHhcCCCEeeeeeCCEEEEEEcCCCCCcceeeeccCCCCceEEEEEECCCHHHHHHHHHHHHHCC
Confidence 46677 9999999999999976532 2222233211 11001 11 111123 488898875 467899999999
Q ss_pred Cee----------eceEEEEECCCCCeEEEecccCCCC
Q 044588 86 VWA----------TGRVGKVKDPCGFTWLIYSPVKKCA 113 (117)
Q Consensus 86 ~~v----------g~r~~~v~DP~G~~w~l~~~~~~~~ 113 (117)
.++ +.++++++||+|+.|+|+...+..+
T Consensus 82 ~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~~~~~~~ 119 (141)
T cd07258 82 VKVVFGPGRHPPSDSIFFYFLDPDGITVEYSFGMEEFA 119 (141)
T ss_pred CcEEeCCceECCCCCEEEEEECCCCCEEEEEeCcceec
Confidence 976 2367899999999999988765443
No 73
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.14 E-value=1e-09 Score=73.81 Aligned_cols=92 Identities=15% Similarity=0.081 Sum_probs=60.2
Q ss_pred EEEEecCCCHHHHHHHHHhhhCeEE--EE---cCe-EE--EEe-cCCCCCccc-cCCCcc-eEEEEEeCCHHH---HHHH
Q 044588 15 PQLLVEESKATNVVQFYKTTSGAQL--EI---AGS-TF--LVS-NFSNDSAAA-KNMGIG-CVLCLEIDDVEA---ALAK 80 (117)
Q Consensus 15 p~L~v~~~D~~~a~~FY~~~fG~~l--~~---~~~-~l--~~~-~~~~~g~~~-~~~~~~-~~l~l~v~dvd~---~~~~ 80 (117)
..|.|+ |++++++||+++||.++ +. .+. .+ .+. ....+.... ..++.+ .+++|.|+|+++ ++++
T Consensus 10 v~l~v~--Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~~~~~h~~~~~~~~~~~~~Hiaf~v~d~~~l~~~~~~ 87 (143)
T cd07243 10 CLLTGE--DIAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSCSNKPHDIAFVGGPDGKLHHFSFFLESWEDVLKAGDI 87 (143)
T ss_pred EEEecC--CHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEecCCCcceEEEecCCCCCceEEEEEcCCHHHHHHHHHH
Confidence 346666 99999999999999653 11 121 12 221 111111111 111234 489999998876 6789
Q ss_pred HHhCCCee-------e---ceEEEEECCCCCeEEEecc
Q 044588 81 AMSGGVWA-------T---GRVGKVKDPCGFTWLIYSP 108 (117)
Q Consensus 81 ~~~~G~~v-------g---~r~~~v~DP~G~~w~l~~~ 108 (117)
+.++|.++ + .+..+++||+||.|+|...
T Consensus 88 l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~~ 125 (143)
T cd07243 88 ISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFAG 125 (143)
T ss_pred HHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEecC
Confidence 99999876 1 3678999999999999753
No 74
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.13 E-value=3.7e-10 Score=72.42 Aligned_cols=87 Identities=18% Similarity=0.241 Sum_probs=52.6
Q ss_pred EEecCCCHHHHHHHHHhhhCeEEEEc------CeE--EEEecCCCC-----Cccc-cCCCc--------ceEEEEE---e
Q 044588 17 LLVEESKATNVVQFYKTTSGAQLEIA------GST--FLVSNFSND-----SAAA-KNMGI--------GCVLCLE---I 71 (117)
Q Consensus 17 L~v~~~D~~~a~~FY~~~fG~~l~~~------~~~--l~~~~~~~~-----g~~~-~~~~~--------~~~l~l~---v 71 (117)
|.+. |++++++||+++||.++... +.. ......... .... ..... ..++.+. +
T Consensus 7 i~v~--d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 84 (128)
T PF00903_consen 7 IRVK--DLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIGEGHIELFLNPSPPPRASGHSFPEHGGHHIAFLAFDV 84 (128)
T ss_dssp EEES--CHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEESTSSCEEEEEEESSSSSSEEEHHHSHTSEEEEEEESSH
T ss_pred EEcC--CHHHHHHHHHHHhCCcEEeeeccccccccccceeecccccceeeeeeccccccccccccccccceeEEEEeccH
Confidence 6677 99999999999999444321 111 111111000 0000 00001 2345554 4
Q ss_pred CCHHHHHHHHHhCCCee---------eceE-EEEECCCCCeEEE
Q 044588 72 DDVEAALAKAMSGGVWA---------TGRV-GKVKDPCGFTWLI 105 (117)
Q Consensus 72 ~dvd~~~~~~~~~G~~v---------g~r~-~~v~DP~G~~w~l 105 (117)
+|++++++++.+.|.++ +..+ .+++||+||.|+|
T Consensus 85 ~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 85 DDLDAAYERLKAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp HHHHHHHHHHHHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred HHHHHHHHHHhhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 57889999999999887 3344 3699999999986
No 75
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.10 E-value=2.1e-09 Score=73.54 Aligned_cols=93 Identities=14% Similarity=0.134 Sum_probs=59.3
Q ss_pred EEEEecCCCHHHHHHHHHhhhCeEEEE-----cCe-E-EEEecCC-CCCcc-ccCCCcc-eEEEEEeCC---HHHHHHHH
Q 044588 15 PQLLVEESKATNVVQFYKTTSGAQLEI-----AGS-T-FLVSNFS-NDSAA-AKNMGIG-CVLCLEIDD---VEAALAKA 81 (117)
Q Consensus 15 p~L~v~~~D~~~a~~FY~~~fG~~l~~-----~~~-~-l~~~~~~-~~g~~-~~~~~~~-~~l~l~v~d---vd~~~~~~ 81 (117)
..|.|+ |+++|++||+++||.++.. .+. . ..+.... ..... ....+.+ .+++|.|+| +++.+++|
T Consensus 7 v~l~V~--Dl~~s~~FY~~vLGl~~~~~~~~~~~~~~~~~l~~~~~~~~i~l~~~~~~~~~Hiaf~v~~~~~v~~~~~~L 84 (161)
T cd07256 7 FNLRVP--DVDAGLAYYRDELGFRVSEYTEDDDGTTWAAWLHRKGGVHDTALTGGNGPRLHHVAFWVPEPHNIIRTCDLL 84 (161)
T ss_pred EEEecC--CHHHHHHHHHhccCCEEEEEeccCCCcEEEEEEecCCCcceEEEecCCCCceeEEEEEcCCHHHHHHHHHHH
Confidence 345666 9999999999999965531 111 1 2221111 11010 0111233 478899875 77889999
Q ss_pred HhCCCee------------eceEEEEECCCCCeEEEeccc
Q 044588 82 MSGGVWA------------TGRVGKVKDPCGFTWLIYSPV 109 (117)
Q Consensus 82 ~~~G~~v------------g~r~~~v~DP~G~~w~l~~~~ 109 (117)
.++|+.. +.++.+++||+||.|+|.+..
T Consensus 85 ~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~~~ 124 (161)
T cd07256 85 AAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYTGD 124 (161)
T ss_pred HHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEeecC
Confidence 9999752 134689999999999998643
No 76
>PLN02300 lactoylglutathione lyase
Probab=99.10 E-value=3.1e-09 Score=78.93 Aligned_cols=94 Identities=15% Similarity=0.157 Sum_probs=65.2
Q ss_pred eEEEEecCCCHHHHHHHHHhhhCeEEEE----cC--eEEEEec--CCCC----------Ccc-ccCCCcceEEEEEeCCH
Q 044588 14 KPQLLVEESKATNVVQFYKTTSGAQLEI----AG--STFLVSN--FSND----------SAA-AKNMGIGCVLCLEIDDV 74 (117)
Q Consensus 14 ~p~L~v~~~D~~~a~~FY~~~fG~~l~~----~~--~~l~~~~--~~~~----------g~~-~~~~~~~~~l~l~v~dv 74 (117)
...|.++ |++++.+||+++||+++.. .+ ..+.... .... +.. .......++++|.|+|+
T Consensus 157 ~~~l~~~--d~~~a~~Fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~g~~~~~i~~~v~di 234 (286)
T PLN02300 157 QVMLRVG--DLDRSIKFYEKAFGMKLLRKRDNPEYKYTIAMMGYGPEDKTTVLELTYNYGVTEYTKGNAYAQIAIGTDDV 234 (286)
T ss_pred eEEEEeC--CHHHHHHHHHhccCCEEEeeecccccceEEEEEecCCCCCccEEEEeecCCCCccccCCceeEEEEecCCH
Confidence 4566677 9999999999999976631 11 1121111 1000 000 11122345899999999
Q ss_pred HHHHHHHHhCCCee----------eceEEEEECCCCCeEEEeccc
Q 044588 75 EAALAKAMSGGVWA----------TGRVGKVKDPCGFTWLIYSPV 109 (117)
Q Consensus 75 d~~~~~~~~~G~~v----------g~r~~~v~DP~G~~w~l~~~~ 109 (117)
+++++++.++|+++ +.|++.++||+|+.++|.+..
T Consensus 235 ~~~~~~~~~~G~~v~~~p~~~p~~~~~~~~~~DPdG~~i~~~~~~ 279 (286)
T PLN02300 235 YKTAEAIKLVGGKITREPGPLPGINTKITACLDPDGWKTVFVDNI 279 (286)
T ss_pred HHHHHHHHHcCCeEecCCccCCCCceEEEEEECCCCCEEEEEccc
Confidence 99999999999987 247899999999999998764
No 77
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.07 E-value=3.6e-09 Score=78.28 Aligned_cols=95 Identities=15% Similarity=0.161 Sum_probs=64.8
Q ss_pred eEEEEecCCCHHHHHHHHHhhhCeEEEEc-CeEEEEecC-C--CCCc--cccCCCcceEEEEEeC---CHHHHHHHHHhC
Q 044588 14 KPQLLVEESKATNVVQFYKTTSGAQLEIA-GSTFLVSNF-S--NDSA--AAKNMGIGCVLCLEID---DVEAALAKAMSG 84 (117)
Q Consensus 14 ~p~L~v~~~D~~~a~~FY~~~fG~~l~~~-~~~l~~~~~-~--~~g~--~~~~~~~~~~l~l~v~---dvd~~~~~~~~~ 84 (117)
...|.|+ |++++++||+++||.++... +....+... . .... .........++.+.|+ |++++++++.++
T Consensus 7 hv~l~v~--Dl~~s~~FY~~vLGl~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~hiaf~v~~~~dl~~~~~~l~~~ 84 (294)
T TIGR02295 7 HVELRVT--DLDKSREFYVDLLGFRETESDKEYIYLRGIEEFQHHSLVLTKAPSAALSYIGFRVSKEEDLDKAADFFQKL 84 (294)
T ss_pred EEEEEeC--CHHHHHHHHHHccCCEEEEecCCeEEEeccCcCCceEEEeeeCCCcCccEEEEEeCCHHHHHHHHHHHHhc
Confidence 4567777 99999999999999776432 222222211 0 0000 0111112347888886 889999999999
Q ss_pred CCee-------eceEEEEECCCCCeEEEecccC
Q 044588 85 GVWA-------TGRVGKVKDPCGFTWLIYSPVK 110 (117)
Q Consensus 85 G~~v-------g~r~~~v~DP~G~~w~l~~~~~ 110 (117)
|+++ +.+..+++||+||.|+|+....
T Consensus 85 Gv~v~~~~~~~~~~~~~~~DPdG~~iEl~~~~~ 117 (294)
T TIGR02295 85 GHPVRLVRDGGQPEALRVEDPFGYPIEFYFEME 117 (294)
T ss_pred CCcEEeecCCCCceEEEEECCCCCEEEEEEchh
Confidence 9987 3478899999999999987543
No 78
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.06 E-value=5.5e-09 Score=71.93 Aligned_cols=93 Identities=18% Similarity=0.142 Sum_probs=59.8
Q ss_pred eEEEEecCCCHHHHHHHHHhhhCeEEEE----c-Ce--EEEEec-CCCC--Cc---cccCCCcceEEEEEeCC---HHHH
Q 044588 14 KPQLLVEESKATNVVQFYKTTSGAQLEI----A-GS--TFLVSN-FSND--SA---AAKNMGIGCVLCLEIDD---VEAA 77 (117)
Q Consensus 14 ~p~L~v~~~D~~~a~~FY~~~fG~~l~~----~-~~--~l~~~~-~~~~--g~---~~~~~~~~~~l~l~v~d---vd~~ 77 (117)
...|.|+ |++++++||+++||.++.. . +. ...+.. .... .. .....+.-.+|+|.|+| +++.
T Consensus 9 Hi~l~V~--Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~hiaf~v~~~~~l~~~ 86 (166)
T cd09014 9 HVNLLAS--DVDANRDFMEEVLGFRLREQIRLDNGKEAGAWMSVSNKVHDVAYTRDPAGARGRLHHLAYALDTREDVLRA 86 (166)
T ss_pred eEEEEcC--CHHHHHHHHHHccCCEEEEEEecCCCceEEEEEeCCCCceeEEEecCCCCCCCCceEEEEECCCHHHHHHH
Confidence 3456777 9999999999999965421 1 11 122211 1100 00 00111123588999985 4588
Q ss_pred HHHHHhCCCee-------e--c-eEEEEECCCCCeEEEecc
Q 044588 78 LAKAMSGGVWA-------T--G-RVGKVKDPCGFTWLIYSP 108 (117)
Q Consensus 78 ~~~~~~~G~~v-------g--~-r~~~v~DP~G~~w~l~~~ 108 (117)
++++.++|+++ + . ++.+++||+||.|+|.+.
T Consensus 87 ~~~l~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~ 127 (166)
T cd09014 87 ADIFLENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGG 127 (166)
T ss_pred HHHHHHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEc
Confidence 99999999886 2 2 247899999999999887
No 79
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=98.98 E-value=5.9e-09 Score=79.32 Aligned_cols=92 Identities=18% Similarity=0.157 Sum_probs=64.6
Q ss_pred CcceeEEEEecCCCHHHHHHHHHhhhCeE-E------EEcCeE-EEEecCCCCCccccCCCcceEEEEEeC---CHHHHH
Q 044588 10 FMGMKPQLLVEESKATNVVQFYKTTSGAQ-L------EIAGST-FLVSNFSNDSAAAKNMGIGCVLCLEID---DVEAAL 78 (117)
Q Consensus 10 ~~~~~p~L~v~~~D~~~a~~FY~~~fG~~-l------~~~~~~-l~~~~~~~~g~~~~~~~~~~~l~l~v~---dvd~~~ 78 (117)
-..+..+|.|. |+++|++||+++|+.. + .+++.. +|+.... .......+.++|.++ +||+..
T Consensus 246 ~~~IfVNLpV~--DL~rS~~FYt~LF~~n~Fsde~a~cm~dtI~vMllt~~-----D~~~~~evLl~Ls~~Sre~VD~lv 318 (357)
T PRK01037 246 PKTFSVVLEVQ--DLRRAKKFYSKMFGLECWDGDKLFLLGKTSLYLQQTKA-----EKKNRGTTTLSLELECEHDFVRFL 318 (357)
T ss_pred CceEEEEeeeC--CHHHHHHHHHHHhCCCCCCCCccccccCcEEEEEecCC-----CCCCcceEEEEeccCCHHHHHHHH
Confidence 34567888888 9999999999999932 1 112211 2222221 111225678888887 788999
Q ss_pred HHHHhCCCee-------eceEEEEECCCCCeEEEeccc
Q 044588 79 AKAMSGGVWA-------TGRVGKVKDPCGFTWLIYSPV 109 (117)
Q Consensus 79 ~~~~~~G~~v-------g~r~~~v~DP~G~~w~l~~~~ 109 (117)
++++++||+. |. .-.|.|||||.|++.-..
T Consensus 319 ~~A~aaGG~~~~~~~D~Gf-~rsf~D~DGH~WEi~~~~ 355 (357)
T PRK01037 319 RRWEMLGGELGEQADGHFP-LRLVFDLDGHIWVVSCVQ 355 (357)
T ss_pred HHHHHcCCCCCCCcccccC-cceeECCCCCEEEEEEEe
Confidence 9999999977 44 558999999999997543
No 80
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=98.96 E-value=1.7e-08 Score=74.68 Aligned_cols=92 Identities=16% Similarity=0.091 Sum_probs=59.8
Q ss_pred EEEEecCCCHHHHHHHHHhhhCeEEEE--cCeEEE-EecCCCCCcc--ccCCCcceEEEEEeCC---HHHHHHHHHhCCC
Q 044588 15 PQLLVEESKATNVVQFYKTTSGAQLEI--AGSTFL-VSNFSNDSAA--AKNMGIGCVLCLEIDD---VEAALAKAMSGGV 86 (117)
Q Consensus 15 p~L~v~~~D~~~a~~FY~~~fG~~l~~--~~~~l~-~~~~~~~g~~--~~~~~~~~~l~l~v~d---vd~~~~~~~~~G~ 86 (117)
..|.|+ |+++|++||+++||.+... +++... -.+....... ......-.++.+.|++ ++++.++|.++|.
T Consensus 7 v~l~V~--Dl~~s~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~f~V~~~~~l~~~~~~L~~~Gv 84 (286)
T TIGR03213 7 LGIGVS--DVDAWREFATEVLGMMVASEGENDALYLRLDSRAHRIAVHPGESDDLAYAGWEVADEAGLDQVKEKLEKAGV 84 (286)
T ss_pred EEEEeC--CHHHHHHHHHhccCcccccCCCCceEEEEcCCCceEEEEEECCcCCeeeEeeeeCCHHHHHHHHHHHHHcCC
Confidence 345666 9999999999999965432 112221 1121100000 0011122368888887 8899999999998
Q ss_pred ee------------eceEEEEECCCCCeEEEecc
Q 044588 87 WA------------TGRVGKVKDPCGFTWLIYSP 108 (117)
Q Consensus 87 ~v------------g~r~~~v~DP~G~~w~l~~~ 108 (117)
++ +.+..+|+||+||.|+|...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~f~DPdGn~lEl~~~ 118 (286)
T TIGR03213 85 AVTVASAAEARERGVLGLIKFTDPGGNPLEIYYG 118 (286)
T ss_pred ceEECCHHHhhhccceEEEEEECCCCCEEEEEEc
Confidence 76 13678999999999999863
No 81
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=98.92 E-value=3e-08 Score=73.75 Aligned_cols=95 Identities=18% Similarity=0.262 Sum_probs=63.6
Q ss_pred eEEEEecCCCHHHHHHHHHhhhCeEEEEc-CeEEEEecCC---CCCcc-ccCCCcc-eEEEEEeC---CHHHHHHHHHhC
Q 044588 14 KPQLLVEESKATNVVQFYKTTSGAQLEIA-GSTFLVSNFS---NDSAA-AKNMGIG-CVLCLEID---DVEAALAKAMSG 84 (117)
Q Consensus 14 ~p~L~v~~~D~~~a~~FY~~~fG~~l~~~-~~~l~~~~~~---~~g~~-~~~~~~~-~~l~l~v~---dvd~~~~~~~~~ 84 (117)
...|.|+ |++++++||+++||.++... +....+.... ..... ......+ .+++|.|+ |++++++++.++
T Consensus 7 Hi~l~V~--Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~hiaf~v~~~~dl~~~~~~l~~~ 84 (303)
T TIGR03211 7 HVELRVL--DLEESLKHYTDVLGLEETGRDGQRVYLKAWDEWDHYSVILTEADTAGLDHMAFKVESEADLERLVKRLEAY 84 (303)
T ss_pred EEEEEeC--CHHHHHHHHHHhcCCEEeeecCceEEEEeccccccceEeeccCCCCceeEEEEEeCCHHHHHHHHHHHHHc
Confidence 4456677 99999999999999766432 2222222110 00000 0111123 47888887 889999999999
Q ss_pred CCee----------eceEEEEECCCCCeEEEecccC
Q 044588 85 GVWA----------TGRVGKVKDPCGFTWLIYSPVK 110 (117)
Q Consensus 85 G~~v----------g~r~~~v~DP~G~~w~l~~~~~ 110 (117)
|.++ ..+..+++||+||.|+|.+...
T Consensus 85 G~~~~~~~~~~~~~~g~~~~~~DPdG~~iEl~~~~~ 120 (303)
T TIGR03211 85 GVGTGWIPAGELPGVGRRVRFTLPSGHTMELYAEKE 120 (303)
T ss_pred CCCeeeccCCCCCCcceEEEEECCCCCEEEEEEccc
Confidence 9876 1366799999999999998654
No 82
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=98.88 E-value=4.4e-08 Score=72.89 Aligned_cols=90 Identities=18% Similarity=0.151 Sum_probs=58.2
Q ss_pred EEEecCCCHHHHHHHHHhhhCeEEE----Ec-Ce--EE-EEec-CCCC--CccccC-CCcceEEEEEeCC---HHHHHHH
Q 044588 16 QLLVEESKATNVVQFYKTTSGAQLE----IA-GS--TF-LVSN-FSND--SAAAKN-MGIGCVLCLEIDD---VEAALAK 80 (117)
Q Consensus 16 ~L~v~~~D~~~a~~FY~~~fG~~l~----~~-~~--~l-~~~~-~~~~--g~~~~~-~~~~~~l~l~v~d---vd~~~~~ 80 (117)
.|.|+ |++++++||+++||.++. .. +. .. .+.. .... .....+ .+.-.+++|.|+| +++.+++
T Consensus 150 ~l~V~--Dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Hiaf~v~~~~~v~~~~~~ 227 (303)
T TIGR03211 150 LLYGE--DVAENTRFFTEVLGFRLTEQVVLGDGKEQAAAWLSVSNKAHDIAFVGDPEPGKLHHVSFFLDSWEDVLKAADV 227 (303)
T ss_pred eEEeC--CHHHHHHHHHHhcCCEEEeeEEcCCCcEEEEEEEEcCCCCcccceecCCCCCceEEEEEEcCCHHHHHHHHHH
Confidence 45666 999999999999996542 12 21 11 2211 1111 110111 1123489999986 5567889
Q ss_pred HHhCCCee-------e---ceEEEEECCCCCeEEEec
Q 044588 81 AMSGGVWA-------T---GRVGKVKDPCGFTWLIYS 107 (117)
Q Consensus 81 ~~~~G~~v-------g---~r~~~v~DP~G~~w~l~~ 107 (117)
+.++|.++ + .+..+++||+||.|+|.+
T Consensus 228 l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iEl~~ 264 (303)
T TIGR03211 228 MSKNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFG 264 (303)
T ss_pred HHhCCCceeeCCcccCCCCceEEEEECCCCCEEEEec
Confidence 99999887 2 357899999999999973
No 83
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=98.85 E-value=7.8e-08 Score=71.13 Aligned_cols=93 Identities=24% Similarity=0.174 Sum_probs=60.3
Q ss_pred EEEEecCCCHHHHHHHHHhhhCeEEEE------cCe---EE-EE-ecCCCCCc--cccCCCcce-EEEEEeCCHHH---H
Q 044588 15 PQLLVEESKATNVVQFYKTTSGAQLEI------AGS---TF-LV-SNFSNDSA--AAKNMGIGC-VLCLEIDDVEA---A 77 (117)
Q Consensus 15 p~L~v~~~D~~~a~~FY~~~fG~~l~~------~~~---~l-~~-~~~~~~g~--~~~~~~~~~-~l~l~v~dvd~---~ 77 (117)
..|.++ |++++.+||+++||.++.- +++ .+ .+ .+...+.. ...+...++ +++|.|+|.++ .
T Consensus 146 v~l~v~--Dle~s~~FY~~~LGf~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~l~~~~~~~~~~Hiaf~v~d~~~v~~~ 223 (286)
T TIGR03213 146 IVLRVP--DVDAALAFYTEVLGFQLSDVIDLPAGPGVTVRPYFLHCNERHHSLAFAAGPSEKRLNHLMLEVDTLDDVGLA 223 (286)
T ss_pred EEEEcC--CHHHHHHHHHHccCCeEEEeEcccCCCCCcceEEEEEECCCcceEEEecCCCCCceEEEEEEcCCHHHHHHH
Confidence 356666 9999999999999965421 111 12 22 22111111 011111333 79999987766 7
Q ss_pred HHHHHhCCCee---------eceEEEEECCCCCeEEEeccc
Q 044588 78 LAKAMSGGVWA---------TGRVGKVKDPCGFTWLIYSPV 109 (117)
Q Consensus 78 ~~~~~~~G~~v---------g~r~~~v~DP~G~~w~l~~~~ 109 (117)
++++.++|... +.++.+++||+|++|++.+..
T Consensus 224 ~~~l~~~G~~~~~~~r~~~~~~~~~y~~DP~G~~iE~~~~~ 264 (286)
T TIGR03213 224 LDRVDADGIVASTLGRHTNDHMVSFYVATPSGWLVEYGWGA 264 (286)
T ss_pred HHHHHHCCCEEecCCcCCCCCeEEEEEECCCCcEEEeecCc
Confidence 99999999843 245789999999999998744
No 84
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=98.85 E-value=6.1e-08 Score=66.26 Aligned_cols=45 Identities=24% Similarity=0.375 Sum_probs=39.8
Q ss_pred eEEEEEeCCHHHHHHHHHhCCCee------ec--eEEEEECCCCCeEEEeccc
Q 044588 65 CVLCLEIDDVEAALAKAMSGGVWA------TG--RVGKVKDPCGFTWLIYSPV 109 (117)
Q Consensus 65 ~~l~l~v~dvd~~~~~~~~~G~~v------g~--r~~~v~DP~G~~w~l~~~~ 109 (117)
-+|+|+|+|++++.+++.+.|++. |. ..+++.||||+.++|....
T Consensus 117 gHIci~V~di~sac~~lkekGV~f~Kk~~dGk~K~iaF~~dpDgywiei~~~s 169 (170)
T KOG2944|consen 117 GHICIEVDDINSACERLKEKGVRFKKKLKDGKMKPIAFLHDPDGYWIEIELES 169 (170)
T ss_pred ceEEEEeCCHHHHHHHHHHhCceeeecCCCccccceeEEECCCCCeEEEeecC
Confidence 499999999999999999999988 42 4789999999999997653
No 85
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=98.80 E-value=1.1e-07 Score=70.42 Aligned_cols=93 Identities=17% Similarity=0.195 Sum_probs=59.2
Q ss_pred EEEEecCCCHHHHHHHHHhhhCeEEE--E--c-Ce-EEEEecCCC--CCcc-ccCCCcc-eEEEEEeCC---HHHHHHHH
Q 044588 15 PQLLVEESKATNVVQFYKTTSGAQLE--I--A-GS-TFLVSNFSN--DSAA-AKNMGIG-CVLCLEIDD---VEAALAKA 81 (117)
Q Consensus 15 p~L~v~~~D~~~a~~FY~~~fG~~l~--~--~-~~-~l~~~~~~~--~g~~-~~~~~~~-~~l~l~v~d---vd~~~~~~ 81 (117)
..|.|+ |++++++||+++||.++. . . +. ...+..... +... ....+.+ .+++|.|+| +++.++++
T Consensus 140 v~l~v~--dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Hiaf~v~d~~~v~~~~~~l 217 (294)
T TIGR02295 140 FNVFVP--DVQRALRFYKEELGFRVTEYTEDDEGNLAAAWLHRKGGVHDIALTNGNGPRLHHIAYWVHDPLNIIKACDIL 217 (294)
T ss_pred EEEEeC--CHHHHHHHHHHhcCCEEEEEeccCCCcEEEEEEecCCCcCceEeecCCCCceeeEEEEcCCHHHHHHHHHHH
Confidence 345666 999999999999996542 1 1 21 122211111 1110 0111133 489999998 55668999
Q ss_pred HhCCCe--e--e--------ceEEEEECCCCCeEEEeccc
Q 044588 82 MSGGVW--A--T--------GRVGKVKDPCGFTWLIYSPV 109 (117)
Q Consensus 82 ~~~G~~--v--g--------~r~~~v~DP~G~~w~l~~~~ 109 (117)
.++|.+ + + ..+++++||+||.|+|.+..
T Consensus 218 ~~~G~~~~~~~~p~~~~~~~~~~~y~~DP~G~~iEl~~~~ 257 (294)
T TIGR02295 218 ASAGLSDSIERGPGRHGVSNAFFLYLRDPDGHRIELYTGD 257 (294)
T ss_pred HhCCCCcccccCCccCCCCcceEEEEECCCCCEEEEEecc
Confidence 999986 4 1 24679999999999998643
No 86
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=98.61 E-value=4.9e-07 Score=57.86 Aligned_cols=71 Identities=20% Similarity=0.311 Sum_probs=46.0
Q ss_pred EEEecCCCHHHHHHHHHhhhCeE----------------EEEcCe--EEEEecCCCCCccccCCCcc-eEEEEEeCCHHH
Q 044588 16 QLLVEESKATNVVQFYKTTSGAQ----------------LEIAGS--TFLVSNFSNDSAAAKNMGIG-CVLCLEIDDVEA 76 (117)
Q Consensus 16 ~L~v~~~D~~~a~~FY~~~fG~~----------------l~~~~~--~l~~~~~~~~g~~~~~~~~~-~~l~l~v~dvd~ 76 (117)
.+.|+ |+++|++||+++||.. +..+++ .|-+......+......+.+ .+|++.|+|+++
T Consensus 4 ~i~V~--Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~~~~iELi~p~~~~~~~~~~~~gi~Hia~~v~D~d~ 81 (109)
T PF13669_consen 4 GIVVP--DLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDGPVQIELIQPLDGDSPLDRGGGGIHHIAFEVDDLDA 81 (109)
T ss_dssp EEEES---HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTETEEEEEEEESSTTCHHHHTSSEEEEEEEEESHHHH
T ss_pred EEEcC--CHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCCcEEEEEEEeCCCCcccccCCCCEEEEEEEeCCHHH
Confidence 46777 9999999999999922 122332 23333221111111113355 489999999999
Q ss_pred HHHHHHhCCCee
Q 044588 77 ALAKAMSGGVWA 88 (117)
Q Consensus 77 ~~~~~~~~G~~v 88 (117)
+.+++.++|.++
T Consensus 82 ~~~~l~~~G~~~ 93 (109)
T PF13669_consen 82 AIARLEAQGFRV 93 (109)
T ss_dssp HHHHHHHTTECE
T ss_pred HHHHHHHCCCEE
Confidence 999999999887
No 87
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=98.59 E-value=6.9e-07 Score=65.75 Aligned_cols=94 Identities=18% Similarity=0.196 Sum_probs=64.1
Q ss_pred EEEEecCCCHHHHHHHHHhhhCe----------EEEEcCeEEEEecCCCC-CccccCCCcceEEEEEeC---CHHHHHHH
Q 044588 15 PQLLVEESKATNVVQFYKTTSGA----------QLEIAGSTFLVSNFSND-SAAAKNMGIGCVLCLEID---DVEAALAK 80 (117)
Q Consensus 15 p~L~v~~~D~~~a~~FY~~~fG~----------~l~~~~~~l~~~~~~~~-g~~~~~~~~~~~l~l~v~---dvd~~~~~ 80 (117)
..|.|. |++++..||++++|. .+..++..++.....+. +.+......=+++.|-++ |+..+..+
T Consensus 14 v~L~vr--dL~~~~~FY~~ilGL~v~~~~~~~v~L~vgg~~LL~L~q~~~a~~~~~~~aGLyH~AfLlP~r~~L~~~l~h 91 (265)
T COG2514 14 VTLNVR--DLDSMTSFYQEILGLQVLEETDGSVTLGVGGTPLLTLEQFPDARRPPPRAAGLYHTAFLLPTREDLARVLNH 91 (265)
T ss_pred EEEEec--cHHHHHHHHHHhhCCeeeeccCceEEEeeCCEEEEEEEeCCCCCCCCccccceeeeeeecCCHHHHHHHHHH
Confidence 356677 999999999999992 33445554554443332 222111212368888887 66788999
Q ss_pred HHhCCCee-e--ce----EEEEECCCCCeEEEecccC
Q 044588 81 AMSGGVWA-T--GR----VGKVKDPCGFTWLIYSPVK 110 (117)
Q Consensus 81 ~~~~G~~v-g--~r----~~~v~DP~G~~w~l~~~~~ 110 (117)
+.+.|..+ | .+ -.++.||+||-|++....+
T Consensus 92 l~~~~~~l~Ga~DH~vSEAlYl~DPEGNGIEiYaDrp 128 (265)
T COG2514 92 LAEEGIPLVGASDHLVSEALYLEDPEGNGIEIYADRP 128 (265)
T ss_pred HHhcCCcccccCcchhheeeeecCCCCCeEEEEecCC
Confidence 99999887 3 22 3399999999999987643
No 88
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=98.53 E-value=3e-06 Score=55.37 Aligned_cols=93 Identities=15% Similarity=0.138 Sum_probs=60.4
Q ss_pred EEEecCCCHHHHHHHHHhhhCe----------EEEEcCeEEEE-ecCCCC--Cccc-c---CCCcceEEEEEeCCHHHHH
Q 044588 16 QLLVEESKATNVVQFYKTTSGA----------QLEIAGSTFLV-SNFSND--SAAA-K---NMGIGCVLCLEIDDVEAAL 78 (117)
Q Consensus 16 ~L~v~~~D~~~a~~FY~~~fG~----------~l~~~~~~l~~-~~~~~~--g~~~-~---~~~~~~~l~l~v~dvd~~~ 78 (117)
+|.++.+|++++.+||.++||+ .+.+-|..+.. ....+. +... . .+...+-+.+.+||--+..
T Consensus 7 HLA~pV~Dl~~tr~FYgevlG~~~GRstd~wvdfDfyGHQ~v~Hl~~q~~~~~~g~V~~~~v~~pHfGvVl~~edW~ala 86 (138)
T COG3565 7 HLAIPVNDLDETRRFYGEVLGCKEGRSTDTWVDFDFYGHQVVAHLTPQPDSQGSGKVDGHGVPPPHFGVVLPVEDWFALA 86 (138)
T ss_pred EEeeeccccHHHHhhhhhhcccccccccceEEEeeecccEEEEEecCCcccccCcccCCCCCCCccceEEEEHHHHHHHH
Confidence 3444444999999999999992 22222433322 211110 1100 0 0115667788889888999
Q ss_pred HHHHhCCCee------------e-ceEEEEECCCCCeEEEecc
Q 044588 79 AKAMSGGVWA------------T-GRVGKVKDPCGFTWLIYSP 108 (117)
Q Consensus 79 ~~~~~~G~~v------------g-~r~~~v~DP~G~~w~l~~~ 108 (117)
+|+.++|... | +|..++.||.||.+++..-
T Consensus 87 erlea~gi~~~i~P~vRF~Ge~gEq~TlFl~DP~gN~lEfK~f 129 (138)
T COG3565 87 ERLEAAGIPFHIPPKVRFKGEPGEQRTLFLFDPSGNALEFKGF 129 (138)
T ss_pred HHHHHcCCCcccCceEEecCCccceEEEEEECCCCCeeeeecc
Confidence 9999999644 2 6888999999999998654
No 89
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=98.06 E-value=6.2e-05 Score=53.06 Aligned_cols=27 Identities=33% Similarity=0.410 Sum_probs=24.2
Q ss_pred Ccce-EEEEEeCCHHHHHHHHHhCCCee
Q 044588 62 GIGC-VLCLEIDDVEAALAKAMSGGVWA 88 (117)
Q Consensus 62 ~~~~-~l~l~v~dvd~~~~~~~~~G~~v 88 (117)
+.|+ +|+|.|+|++++++++.++|+++
T Consensus 81 G~Gv~HIAf~vdDI~~~~~~L~~~Gv~~ 108 (191)
T cd07250 81 GAGVQHIALATDDIFATVAALRARGVEF 108 (191)
T ss_pred CCceeEEEEECCCHHHHHHHHHHcCCee
Confidence 3555 89999999999999999999988
No 90
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=98.02 E-value=3.3e-05 Score=48.61 Aligned_cols=92 Identities=24% Similarity=0.166 Sum_probs=55.1
Q ss_pred eEEEEecCCCHHHHHHHHHhhhCeEEEEcC--------eEEEEecCC-----C----CC-----------ccc-cCCC--
Q 044588 14 KPQLLVEESKATNVVQFYKTTSGAQLEIAG--------STFLVSNFS-----N----DS-----------AAA-KNMG-- 62 (117)
Q Consensus 14 ~p~L~v~~~D~~~a~~FY~~~fG~~l~~~~--------~~l~~~~~~-----~----~g-----------~~~-~~~~-- 62 (117)
...|.|+ |+++|++||+++||.++.... ....+.... . .+ ... ....
T Consensus 5 hv~l~v~--dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (138)
T COG0346 5 HVTLAVP--DLEASIDFYTDVLGLRLVKDTVNEADDGGGYHLLFLDGDGGPGELLAFFGFEGRAGTGFVGDVALGVPGGD 82 (138)
T ss_pred EEEEeeC--CHhHhHHHHHhhcCCeeeeecccccCCceEEEEEeccCCCCcccceeecccccccccccccceEEeecCch
Confidence 4567787 999999999999995553221 011111110 0 00 000 0011
Q ss_pred -cceEEEEEeCC---HHHHHHHHHhCCCee--ec-e----EEEEECCCCCeEEEec
Q 044588 63 -IGCVLCLEIDD---VEAALAKAMSGGVWA--TG-R----VGKVKDPCGFTWLIYS 107 (117)
Q Consensus 63 -~~~~l~l~v~d---vd~~~~~~~~~G~~v--g~-r----~~~v~DP~G~~w~l~~ 107 (117)
....+.+.+++ ....+..+...|..+ .. . .++++||+|+.|+|.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~dp~g~~~e~~~ 138 (138)
T COG0346 83 LGLGHLAFEVDDEAFGDAALAFLDPDGVRIELGEPGRGGVHVYFRDPDGILIELAT 138 (138)
T ss_pred hccCceeEecccccccceEEEeeCCCCCEEEeecCCCcceEEEEECCCCcEEEeeC
Confidence 14567777776 566666666667665 21 1 6899999999999864
No 91
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=97.97 E-value=0.00039 Score=53.22 Aligned_cols=73 Identities=21% Similarity=0.253 Sum_probs=47.8
Q ss_pred eEEEEecCCCHHHHHHHHHhhhCeEEE---------------EcCeEEEEecCCCCCccc----cCCCcc-eEEEEEeCC
Q 044588 14 KPQLLVEESKATNVVQFYKTTSGAQLE---------------IAGSTFLVSNFSNDSAAA----KNMGIG-CVLCLEIDD 73 (117)
Q Consensus 14 ~p~L~v~~~D~~~a~~FY~~~fG~~l~---------------~~~~~l~~~~~~~~g~~~----~~~~~~-~~l~l~v~d 73 (117)
.+.+.|+ |++++++||.+.||.+.. .++..+.+........+. ...+.+ .+++|.|+|
T Consensus 5 hi~~~V~--D~~~a~~~y~~~LGf~~~~~~~~~~~~~~~~~~~G~~~l~L~~~~~~~s~~~~~~~~hg~gv~~iaf~V~D 82 (353)
T TIGR01263 5 FVEFYVG--DAKQAAYYYFTRFGFEKVAKETGHREKASHVLRQGQINFVLTAPYSSDSPAADFAAKHGDGVKDVAFRVDD 82 (353)
T ss_pred EEEEEeC--CHHHHHHHHHHhcCCcEEEEeecCCceeEEEEEeCCEEEEEecCCCCCchHHHHHHhCCCceEEEEEEECC
Confidence 4567777 999999999999993221 122234443321111000 012233 579999999
Q ss_pred HHHHHHHHHhCCCee
Q 044588 74 VEAALAKAMSGGVWA 88 (117)
Q Consensus 74 vd~~~~~~~~~G~~v 88 (117)
++++++++.++|+++
T Consensus 83 v~~a~~~l~~~Ga~~ 97 (353)
T TIGR01263 83 AAAAFEAAVERGAEP 97 (353)
T ss_pred HHHHHHHHHHCCCEe
Confidence 999999999999987
No 92
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=97.88 E-value=0.00014 Score=53.14 Aligned_cols=48 Identities=21% Similarity=0.237 Sum_probs=37.1
Q ss_pred cce-EEEEEeCCHHHHHHHHHhCCCee-eceEEEEECCCCCeEEEecccC
Q 044588 63 IGC-VLCLEIDDVEAALAKAMSGGVWA-TGRVGKVKDPCGFTWLIYSPVK 110 (117)
Q Consensus 63 ~~~-~l~l~v~dvd~~~~~~~~~G~~v-g~r~~~v~DP~G~~w~l~~~~~ 110 (117)
+++ .+.|..+|+-...+++...|++. |...+.++||+|+.+.|....+
T Consensus 96 ndfg~i~I~s~dv~~~ve~v~~p~~~~~g~~~~~v~dPdGykF~l~~~~p 145 (299)
T KOG2943|consen 96 NDFGGITIASDDVFSKVEKVNAPGGKGSGCGIAFVKDPDGYKFYLIDRGP 145 (299)
T ss_pred CCcccEEEeHHHHHHHHHHhcCcCCcccceEEEEEECCCCcEEEEeccCC
Confidence 443 67788888888888777766665 5668899999999999997443
No 93
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=97.81 E-value=0.0002 Score=52.38 Aligned_cols=93 Identities=12% Similarity=0.084 Sum_probs=57.7
Q ss_pred eeEEEEecCCCHHHHHHHHHhhhCeEE------------EEcCeE--EEEecCCCCCccccCCCcceEEEEEeCCHHHHH
Q 044588 13 MKPQLLVEESKATNVVQFYKTTSGAQL------------EIAGST--FLVSNFSNDSAAAKNMGIGCVLCLEIDDVEAAL 78 (117)
Q Consensus 13 ~~p~L~v~~~D~~~a~~FY~~~fG~~l------------~~~~~~--l~~~~~~~~g~~~~~~~~~~~l~l~v~dvd~~~ 78 (117)
+...|.|. |+++|+.||.++||..+ ..+... |-+..... ......+-..+.+.+-.+++...-
T Consensus 151 ~~V~l~Vg--dL~ks~kyw~~~lgM~ilekeek~t~~~mgYgd~q~~LElt~~~~-~id~~kg~griafaip~d~~~~l~ 227 (299)
T KOG2943|consen 151 LQVMLNVG--DLQKSIKYWEKLLGMKILEKEEKYTRARMGYGDEQCVLELTYNYD-VIDRAKGFGRIAFAIPTDDLPKLQ 227 (299)
T ss_pred EEEEEEeh--hHHHHHHHHHHHhCcchhhhhhhhhhhhhccCCcceEEEEEeccC-cccccccceeEEEeccccccccHH
Confidence 45567888 99999999999999433 222211 22211110 111111113466777667777666
Q ss_pred HHHHhCCCee-------------eceEEEEECCCCCeEEEecc
Q 044588 79 AKAMSGGVWA-------------TGRVGKVKDPCGFTWLIYSP 108 (117)
Q Consensus 79 ~~~~~~G~~v-------------g~r~~~v~DP~G~~w~l~~~ 108 (117)
+.++.+++++ +.....+.|||||-+++...
T Consensus 228 e~iK~~n~~i~~~lttl~tPgka~vqvvil~DPDgheicfVdd 270 (299)
T KOG2943|consen 228 EAIKSANGTILTPLTTLDTPGKATVQVVILADPDGHEICFVDD 270 (299)
T ss_pred HHHHHhccccccceeeccCCCcceeEEEEEECCCCceEEEecc
Confidence 6666666655 24577999999999999764
No 94
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=97.77 E-value=0.00022 Score=54.59 Aligned_cols=94 Identities=18% Similarity=0.258 Sum_probs=58.4
Q ss_pred EEEecCC--CHHHHHHHHHhhhCeEE----EEcC----------------eEEEEecCCC-CCcc------ccCCCcce-
Q 044588 16 QLLVEES--KATNVVQFYKTTSGAQL----EIAG----------------STFLVSNFSN-DSAA------AKNMGIGC- 65 (117)
Q Consensus 16 ~L~v~~~--D~~~a~~FY~~~fG~~l----~~~~----------------~~l~~~~~~~-~g~~------~~~~~~~~- 65 (117)
++.+.+. |++++++||+++||.+. .+.+ ..|-+..... .... ....+.|+
T Consensus 161 Hv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~~~~~~~~~~s~~~~~~~g~~~i~L~ep~~~~~~s~i~~fl~~~~g~Gv~ 240 (353)
T TIGR01263 161 HLVGNVYRGQMEPWAEFYEKIFGFREIRSFDIKTEYSALNSIVMASPDGKVKIPLNEPASGKDKSQIEEFLEFYNGAGVQ 240 (353)
T ss_pred eeEcccCCccHHHHHHHHHHHhCCceeeEEEeccCCccEEEEEEECCCCcEEEEEeccCCCCCCCHHHHHHHHcCCCCcc
Confidence 4555554 89999999999999322 1211 1121211100 0000 01123555
Q ss_pred EEEEEeCCHHHHHHHHHhCCCee-----------eceEE--------------EE--ECCCCCeEEEeccc
Q 044588 66 VLCLEIDDVEAALAKAMSGGVWA-----------TGRVG--------------KV--KDPCGFTWLIYSPV 109 (117)
Q Consensus 66 ~l~l~v~dvd~~~~~~~~~G~~v-----------g~r~~--------------~v--~DP~G~~w~l~~~~ 109 (117)
+|+|.|+|++++++++.++|+++ ..|+. .+ +|.+|..++|++..
T Consensus 241 HiAf~vdDi~~~~~~l~~~Gv~~l~~P~~yY~~l~~r~~~~~~~~~~~l~~~~iL~D~d~~g~llqift~~ 311 (353)
T TIGR01263 241 HIALNTDDIVRTVRALRARGVEFLDTPDTYYDLLGERLGGHVKEDLDTLRELNILIDGDEDGYLLQIFTKP 311 (353)
T ss_pred EEEEEcCCHHHHHHHHHHcCCccCcCCHHHHHHHHHHhcccccchHHHHHHCCEEEecCCCceEEEEeccC
Confidence 79999999999999999999987 23432 22 56778899998764
No 95
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=97.54 E-value=0.0065 Score=40.05 Aligned_cols=94 Identities=14% Similarity=0.180 Sum_probs=52.2
Q ss_pred eeEEEEecCCCHHHHHHHHHhhhCeEEEEc-CeEEEEecCCCC------Cccc----cC--CCcceEEEEEeCCHHHHHH
Q 044588 13 MKPQLLVEESKATNVVQFYKTTSGAQLEIA-GSTFLVSNFSND------SAAA----KN--MGIGCVLCLEIDDVEAALA 79 (117)
Q Consensus 13 ~~p~L~v~~~D~~~a~~FY~~~fG~~l~~~-~~~l~~~~~~~~------g~~~----~~--~~~~~~l~l~v~dvd~~~~ 79 (117)
++|.|.|+ |-+.-++||++.||..+... +....+++.... .+|. .. +..--.+.+.+++..+. +
T Consensus 2 ~~PvlRVn--nR~~ni~FY~~~LGfkll~EEna~a~lg~~~~~erlvlEESP~~rtr~V~G~KKl~~ivIkv~~~~EI-e 78 (125)
T PF14506_consen 2 IIPVLRVN--NRDLNIDFYQKTLGFKLLSEENALAILGDQQKEERLVLEESPSMRTRAVEGPKKLNRIVIKVPNPKEI-E 78 (125)
T ss_dssp EEEEEEES--SHHHHHHHHTTTT--EEEEEETTEEEEE-TT--EEEEEEE--TTT-B--SSS-SEEEEEEEESSHHHH-H
T ss_pred cCceEEEc--CHHHhHHHHHhccCcEEeeccccEEEecCCCCceEEEEecCCccccccccCcceeeEEEEEcCCHHHH-H
Confidence 57999999 99999999999999665544 333333332110 1111 00 11234778888887776 4
Q ss_pred HHHhCCCee-----e--ceEEEEECCCCCeEEEeccc
Q 044588 80 KAMSGGVWA-----T--GRVGKVKDPCGFTWLIYSPV 109 (117)
Q Consensus 80 ~~~~~G~~v-----g--~r~~~v~DP~G~~w~l~~~~ 109 (117)
.+++.|..+ | +.-+-+.+|+|..|.|....
T Consensus 79 ~LLar~~~~~~l~kg~~gyAfe~vSPEgd~~llhaEd 115 (125)
T PF14506_consen 79 ALLARGAQYDRLYKGKNGYAFEAVSPEGDRFLLHAED 115 (125)
T ss_dssp HHHHC-S--SEEEE-SSSEEEEEE-TT--EEEEE--S
T ss_pred HHHhcccccceeEEcCCceEEEEECCCCCEEEEEEcC
Confidence 467778766 3 34457889999999998653
No 96
>PF15067 FAM124: FAM124 family
Probab=96.50 E-value=0.034 Score=40.58 Aligned_cols=88 Identities=11% Similarity=0.099 Sum_probs=55.5
Q ss_pred eEEEEecCCCHHHHHHHHHhhhCeE--EEEcCe-----------EEEEecCC-CCCccccCCCcceEEEEEeCCHHHHHH
Q 044588 14 KPQLLVEESKATNVVQFYKTTSGAQ--LEIAGS-----------TFLVSNFS-NDSAAAKNMGIGCVLCLEIDDVEAALA 79 (117)
Q Consensus 14 ~p~L~v~~~D~~~a~~FY~~~fG~~--l~~~~~-----------~l~~~~~~-~~g~~~~~~~~~~~l~l~v~dvd~~~~ 79 (117)
+-|...+ |.+.+++||+-+++.+ .+-.+. .|-++-.. +.|..+. +-....|.|.|.|+-+..-
T Consensus 133 tly~~~~--N~~d~vr~Yelil~~~~~~~k~~FC~F~lys~~~~~iQlsLK~lp~~~~p~-p~esavLqF~V~~igqLvp 209 (236)
T PF15067_consen 133 TLYCSFD--NYEDMVRFYELILQREPTQQKEDFCFFTLYSQPGLDIQLSLKQLPPGMSPE-PTESAVLQFRVEDIGQLVP 209 (236)
T ss_pred EEEecCC--CHHHHHHHHHHHhccCcceeeCCcEEEEEecCCCeEEEEEeccCCCCCCcc-cccceEEEEEecchhhhcc
Confidence 4444445 9999999999999922 222222 33332211 1122222 2267899999999998877
Q ss_pred HHHhCCCee-eceEEEEECCCCCeEEE
Q 044588 80 KAMSGGVWA-TGRVGKVKDPCGFTWLI 105 (117)
Q Consensus 80 ~~~~~G~~v-g~r~~~v~DP~G~~w~l 105 (117)
++-..+.. +...-...|||||.+-|
T Consensus 210 -LLPnpc~PIS~~rWqT~D~DGNkILL 235 (236)
T PF15067_consen 210 -LLPNPCSPISETRWQTEDYDGNKILL 235 (236)
T ss_pred -cCCCCcccccCCcceeeCCCCCEecc
Confidence 45555544 55557899999998754
No 97
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=96.38 E-value=0.019 Score=43.84 Aligned_cols=70 Identities=19% Similarity=0.305 Sum_probs=44.6
Q ss_pred EEecCCCHHHHHHHHHhhhCeEE----------------EE-cCeEEEEe-cC-CC----CCccccCCCcce-EEEEEeC
Q 044588 17 LLVEESKATNVVQFYKTTSGAQL----------------EI-AGSTFLVS-NF-SN----DSAAAKNMGIGC-VLCLEID 72 (117)
Q Consensus 17 L~v~~~D~~~a~~FY~~~fG~~l----------------~~-~~~~l~~~-~~-~~----~g~~~~~~~~~~-~l~l~v~ 72 (117)
+.|. |...+.+||...||.+- .+ .|..+.+. .. .+ +|.-....|.++ .++|+|+
T Consensus 23 F~vg--na~q~A~~y~~~fGfep~A~~~letg~~~~~s~alr~g~~vFv~~s~~~p~~~~~G~~l~~HgdgvkdvafeVe 100 (381)
T KOG0638|consen 23 FWVG--NAKQAARWYCSGFGFEPLAYRGLETGSREWASHALRQGKIVFVFNSAYNPDNSEYGDHLVKHGDGVKDVAFEVE 100 (381)
T ss_pred EEec--CcHHHHHHHHhhcCCcchhcccccccchHHHHHHhhcCCEEEEEecCCCCCchhhhhhhhhcccchhceEEEec
Confidence 4455 99999999999999221 11 12222222 21 11 121111223444 7899999
Q ss_pred CHHHHHHHHHhCCCee
Q 044588 73 DVEAALAKAMSGGVWA 88 (117)
Q Consensus 73 dvd~~~~~~~~~G~~v 88 (117)
|.+++++.+.++|+.+
T Consensus 101 D~da~~~~~va~Ga~v 116 (381)
T KOG0638|consen 101 DADAIFQEAVANGAKV 116 (381)
T ss_pred chHHHHHHHHHcCCcc
Confidence 9999999999999988
No 98
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=95.75 E-value=0.07 Score=41.94 Aligned_cols=48 Identities=27% Similarity=0.344 Sum_probs=36.0
Q ss_pred Ccce-EEEEEeCCHHHHHHHHHhC----CCee------------ece---------------EEEEECCC--CCeEEEec
Q 044588 62 GIGC-VLCLEIDDVEAALAKAMSG----GVWA------------TGR---------------VGKVKDPC--GFTWLIYS 107 (117)
Q Consensus 62 ~~~~-~l~l~v~dvd~~~~~~~~~----G~~v------------g~r---------------~~~v~DP~--G~~w~l~~ 107 (117)
|.|+ +|.|.++|+.++.+++.++ |.+. ..| ...+.|.+ |.+++|++
T Consensus 260 G~GIQHIAl~tdDI~~av~~Lra~~~~~Gv~fL~~Pp~~YYd~L~~R~~~~l~~e~~~~L~~~~ILvD~d~~G~LLQIFT 339 (398)
T PLN02875 260 GPGLQHLALKSDDIFGTLREMRARSHIGGFEFMPPPPPTYYKNLKKRVGDVLTEEQIKECEELGILVDKDDQGVLLQIFT 339 (398)
T ss_pred CCCeeEEEeecCCHHHHHHHHHhccccCCeecCCCChHHHHHHHHHHhccCCChhhHHHHHHcCEEEecCCCceEEEEec
Confidence 4665 8999999999999999998 8766 122 22555555 88899887
Q ss_pred cc
Q 044588 108 PV 109 (117)
Q Consensus 108 ~~ 109 (117)
..
T Consensus 340 kp 341 (398)
T PLN02875 340 KP 341 (398)
T ss_pred cc
Confidence 64
No 99
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=95.41 E-value=0.69 Score=36.45 Aligned_cols=46 Identities=13% Similarity=0.134 Sum_probs=34.0
Q ss_pred cc-eEEEEEeCCHHHHHHHHHhCCCee-------e-------ceEEEEECCCCCeEEEecc
Q 044588 63 IG-CVLCLEIDDVEAALAKAMSGGVWA-------T-------GRVGKVKDPCGFTWLIYSP 108 (117)
Q Consensus 63 ~~-~~l~l~v~dvd~~~~~~~~~G~~v-------g-------~r~~~v~DP~G~~w~l~~~ 108 (117)
.+ ..+.|.|+|+++++++++++|++. + -++..++=+.|....|.+.
T Consensus 91 ~gV~dvaf~V~Da~~a~~~A~~~Ga~~~~~~~~~~d~~~~g~~~~~~I~~~G~~~h~lVdr 151 (398)
T PLN02875 91 LAVRAVGVLVEDAEEAFRTSVAHGARPVLEPTELGDEASGGKAVIAEVELYGDVVLRYVSY 151 (398)
T ss_pred CeeeEEEEEECCHHHHHHHHHHCCCeeccCCccccccccCceEEEEEEEccCCcEEEEEcc
Confidence 44 478999999999999999999987 1 1344566666666666653
No 100
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=95.12 E-value=0.05 Score=34.83 Aligned_cols=84 Identities=14% Similarity=0.156 Sum_probs=34.7
Q ss_pred eEEEEecCCCHHHHHHHHHhhhCeEEEEcCeEEEEecCCCCCccc-cCCCcce---EEEEEeC---CHHHHHHHHHhCCC
Q 044588 14 KPQLLVEESKATNVVQFYKTTSGAQLEIAGSTFLVSNFSNDSAAA-KNMGIGC---VLCLEID---DVEAALAKAMSGGV 86 (117)
Q Consensus 14 ~p~L~v~~~D~~~a~~FY~~~fG~~l~~~~~~l~~~~~~~~g~~~-~~~~~~~---~l~l~v~---dvd~~~~~~~~~G~ 86 (117)
.-.|.|. | +++.+||+++||..+. ..+.+.... |..- ..+...| .|-+.|+ |+.+.-+++.+.+.
T Consensus 8 ~i~LNV~--d-~~~~~fy~~~f~~~~~---~~l~f~ea~--G~DL~~~~~~twDLe~Lkf~V~~~~Dl~~L~~~le~~~~ 79 (101)
T PF14507_consen 8 SIELNVP--D-AKSQSFYQSIFGGQLP---FFLTFQEAQ--GPDLTIENNETWDLEMLKFQVPKDFDLAALKSHLEEQEF 79 (101)
T ss_dssp EEEEEE---T--T---S--H---HHHT---TTEEEEE-----CCGSS-TTSBSSEEEEEEEES-S--HHHHHHHTTTS-E
T ss_pred EEEEeCC--C-hhHHHHHHhccccCCC---ceEEEeecc--CCccccCCCcEEeeEEEEEEecCcccHHHHHHHhcccce
Confidence 4567788 9 8899999999972111 112222111 1111 1111233 5566777 55566665544222
Q ss_pred ee--eceEEEEECCCCCeEEE
Q 044588 87 WA--TGRVGKVKDPCGFTWLI 105 (117)
Q Consensus 87 ~v--g~r~~~v~DP~G~~w~l 105 (117)
=+ ..++..+.||.|+-|.+
T Consensus 80 fidKk~k~l~~~Dps~IElWF 100 (101)
T PF14507_consen 80 FIDKKEKFLVTSDPSQIELWF 100 (101)
T ss_dssp E--TT-SEEEEE-TTS-EEEE
T ss_pred EecCCceEEEEECCcceEEEe
Confidence 22 57899999999998865
No 101
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=94.55 E-value=0.36 Score=32.59 Aligned_cols=89 Identities=22% Similarity=0.324 Sum_probs=50.4
Q ss_pred EEecCCCHHHHHHHHHhhhC-----------eEE-EEcCeEEEEecCCCCCccc---cCCCcc-eEEEEEeCCHHHHHHH
Q 044588 17 LLVEESKATNVVQFYKTTSG-----------AQL-EIAGSTFLVSNFSNDSAAA---KNMGIG-CVLCLEIDDVEAALAK 80 (117)
Q Consensus 17 L~v~~~D~~~a~~FY~~~fG-----------~~l-~~~~~~l~~~~~~~~g~~~---~~~~~~-~~l~l~v~dvd~~~~~ 80 (117)
+.++ +.+++..++ +.|| ..+ +-++-.+.+... +.+... ...|.+ ..+.|.|+|+++++++
T Consensus 15 Fa~~--~~~~l~~~~-~~lGF~~~a~hrsk~v~l~rQG~I~~vln~e-p~s~a~~~~~~HG~sv~aiafrV~Da~~A~~r 90 (139)
T PF14696_consen 15 FAVP--DAQALAQLF-TALGFQPVARHRSKDVTLYRQGDINFVLNSE-PDSFAAEFAAQHGPSVCAIAFRVDDAAAAYER 90 (139)
T ss_dssp EE-S--STTSCHHHH-CCCCEEEECCECCCSEEEEEETTEEEEEEEE-STSCHHHHHHHHSSEEEEEEEEES-HHHHHHH
T ss_pred EecC--CHHHHHHHH-HHhCcceEEecCCcceEEEEeCCEEEEEeCC-CcchHHHHHHhcCCEEEEEEEEeCCHHHHHHH
Confidence 3445 866666666 5689 222 223444555432 322210 111344 4789999999999999
Q ss_pred HHhCCCee-------e-ceEEEEECCCCCeEEEeccc
Q 044588 81 AMSGGVWA-------T-GRVGKVKDPCGFTWLIYSPV 109 (117)
Q Consensus 81 ~~~~G~~v-------g-~r~~~v~DP~G~~w~l~~~~ 109 (117)
+++.|++. | .....++=+.|.++.|++..
T Consensus 91 A~~~GA~~~~~~~~~~e~~~paI~g~G~sl~yfVdr~ 127 (139)
T PF14696_consen 91 AVALGAEPVQEPTGPGELNIPAIRGIGGSLHYFVDRY 127 (139)
T ss_dssp HHHTT--EEEEEEETT-BEEEEEE-CCC-EEEEEE--
T ss_pred HHHcCCcCcccCCCCCcEeeeeEEccCCCEEEEEecC
Confidence 99999987 1 34667888888888887764
No 102
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=93.82 E-value=0.44 Score=36.84 Aligned_cols=27 Identities=30% Similarity=0.352 Sum_probs=23.9
Q ss_pred Ccce-EEEEEeCCHHHHHHHHHhCCCee
Q 044588 62 GIGC-VLCLEIDDVEAALAKAMSGGVWA 88 (117)
Q Consensus 62 ~~~~-~l~l~v~dvd~~~~~~~~~G~~v 88 (117)
|.|+ +|.|.++|+-++.+++.++|...
T Consensus 243 G~GIQHIA~~T~dI~~tv~~lr~rG~~f 270 (363)
T COG3185 243 GEGIQHIAFGTDDIYATVAALRERGVKF 270 (363)
T ss_pred CCcceEEEecccHHHHHHHHHHHcCCcc
Confidence 4554 89999999999999999999877
No 103
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=92.97 E-value=0.74 Score=34.32 Aligned_cols=30 Identities=13% Similarity=0.267 Sum_probs=21.0
Q ss_pred ceeEEEEecCCCHHHHHHHHHhhhCeEEEE
Q 044588 12 GMKPQLLVEESKATNVVQFYKTTSGAQLEI 41 (117)
Q Consensus 12 ~~~p~L~v~~~D~~~a~~FY~~~fG~~l~~ 41 (117)
+++-+|.+.+.|+++|.+||+++||.+...
T Consensus 167 t~IGHvHL~v~~l~eA~~fY~~~LG~~~~~ 196 (265)
T COG2514 167 TIIGHVHLKVADLEEAEQFYEDVLGLEVTA 196 (265)
T ss_pred cEEeEEEEEeCCHHHHHHHHHHhcCCeeee
Confidence 344444443349999999999999955543
No 104
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=90.57 E-value=0.53 Score=32.25 Aligned_cols=70 Identities=17% Similarity=0.198 Sum_probs=32.0
Q ss_pred EEEecCCCHHHHHHHHHhhhCeEE----------------EEcCeEEEEecCCC--CC--cccc------CCCcc-eEEE
Q 044588 16 QLLVEESKATNVVQFYKTTSGAQL----------------EIAGSTFLVSNFSN--DS--AAAK------NMGIG-CVLC 68 (117)
Q Consensus 16 ~L~v~~~D~~~a~~FY~~~fG~~l----------------~~~~~~l~~~~~~~--~g--~~~~------~~~~~-~~l~ 68 (117)
.+.|+ |++++.++|++.||..+ .++++-|-+....+ .. .... ..+.+ ..++
T Consensus 5 v~~v~--dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~~~YlEli~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 82 (175)
T PF13468_consen 5 VIAVR--DLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFGDGYLELIAIDPEAPAPDRGRWFGLDRLAGGEGLYGWA 82 (175)
T ss_dssp EEE-T--TGGG----GGGS--S--EEEEE-TTT-EEEEEEE-SSSEEEEEEES-HHHSTGGGT-TTTHHHHT--EEEEEE
T ss_pred EEEcC--CHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeCCceEEEEEeCCcccccccccceechhhcCCCCeEEEE
Confidence 34556 99999999988899332 22322222221111 00 0000 12344 4889
Q ss_pred EEeCCHHHHHHHHHhCCCe
Q 044588 69 LEIDDVEAALAKAMSGGVW 87 (117)
Q Consensus 69 l~v~dvd~~~~~~~~~G~~ 87 (117)
+.++|+++..+++.+.|..
T Consensus 83 l~t~d~~~~~~~l~~~G~~ 101 (175)
T PF13468_consen 83 LRTDDIEAVAARLRAAGLD 101 (175)
T ss_dssp EE-S-HHHHHHHHHTTT-E
T ss_pred EecCCHHHHHHHHHhcCCC
Confidence 9999999999999999953
No 105
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=90.46 E-value=5 Score=31.22 Aligned_cols=38 Identities=32% Similarity=0.527 Sum_probs=31.1
Q ss_pred cceEEEEEeCCHHHHHHHHHhCCCee------------------eceEEEEECCCC
Q 044588 63 IGCVLCLEIDDVEAALAKAMSGGVWA------------------TGRVGKVKDPCG 100 (117)
Q Consensus 63 ~~~~l~l~v~dvd~~~~~~~~~G~~v------------------g~r~~~v~DP~G 100 (117)
.-..+.+.|+|..++++++++.|++. |+...++.|++|
T Consensus 87 s~~a~a~~V~DA~~A~a~A~a~gA~~~~~~~g~~e~~ipai~giggsllyfvd~~~ 142 (363)
T COG3185 87 SACAMAFRVDDAEQALARALALGARTIDTEIGAGEVDIPAIRGIGGSLLYFVDRYG 142 (363)
T ss_pred chheeEEeeCCHHHHHHHHHHcCCccccCCCCCccccccceeccCCcEEEEeccCC
Confidence 44578899999999999999999944 456678888883
No 106
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=90.17 E-value=1 Score=28.21 Aligned_cols=47 Identities=19% Similarity=0.077 Sum_probs=36.5
Q ss_pred EEEEEeCCHHHHHHHHHh-CCCee---------eceEEEEECCCC-CeEEEecccCCC
Q 044588 66 VLCLEIDDVEAALAKAMS-GGVWA---------TGRVGKVKDPCG-FTWLIYSPVKKC 112 (117)
Q Consensus 66 ~l~l~v~dvd~~~~~~~~-~G~~v---------g~r~~~v~DP~G-~~w~l~~~~~~~ 112 (117)
++.|.|+|++++.+.+.+ .|.+. +.+..++.-+.| ..++|.++....
T Consensus 2 Hv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~~~~iELi~p~~~~ 59 (109)
T PF13669_consen 2 HVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDGPVQIELIQPLDGD 59 (109)
T ss_dssp EEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTETEEEEEEEESSTT
T ss_pred EEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCCcEEEEEEEeCCCC
Confidence 678999999999888887 78655 345678888888 689999987654
No 107
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=83.91 E-value=1.3 Score=20.54 Aligned_cols=14 Identities=21% Similarity=0.382 Sum_probs=10.9
Q ss_pred eEEEEECCCCCeEE
Q 044588 91 RVGKVKDPCGFTWL 104 (117)
Q Consensus 91 r~~~v~DP~G~~w~ 104 (117)
-+..++|++|++|-
T Consensus 7 I~~i~~D~~G~lWi 20 (24)
T PF07494_consen 7 IYSIYEDSDGNLWI 20 (24)
T ss_dssp EEEEEE-TTSCEEE
T ss_pred EEEEEEcCCcCEEE
Confidence 36789999999995
No 108
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=80.32 E-value=6.2 Score=30.48 Aligned_cols=28 Identities=21% Similarity=0.236 Sum_probs=24.3
Q ss_pred CCcce-EEEEEeCCHHHHHHHHHhCCCee
Q 044588 61 MGIGC-VLCLEIDDVEAALAKAMSGGVWA 88 (117)
Q Consensus 61 ~~~~~-~l~l~v~dvd~~~~~~~~~G~~v 88 (117)
.|.|+ ++.+.++|+-++.+.+.++|++.
T Consensus 259 gG~GvQHiaL~tedIi~Ai~~lr~rG~eF 287 (381)
T KOG0638|consen 259 GGAGVQHIALNTEDIIEAIRGLRARGGEF 287 (381)
T ss_pred CCCceeeeeecchHHHHHHHHHHhcCCcc
Confidence 35665 89999999999999999999987
No 109
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=71.70 E-value=13 Score=22.22 Aligned_cols=37 Identities=22% Similarity=0.153 Sum_probs=29.3
Q ss_pred CHHHHHHHHHhCCCee--------eceEEEEECCCCCeEEEeccc
Q 044588 73 DVEAALAKAMSGGVWA--------TGRVGKVKDPCGFTWLIYSPV 109 (117)
Q Consensus 73 dvd~~~~~~~~~G~~v--------g~r~~~v~DP~G~~w~l~~~~ 109 (117)
..+++.+++.+.|.++ |.....+.|++|+.+++.-..
T Consensus 30 ~~~~~~~~l~~~G~~v~~ve~~~~g~yev~~~~~dG~~~ev~vD~ 74 (83)
T PF13670_consen 30 SIEQAVAKLEAQGYQVREVEFDDDGCYEVEARDKDGKKVEVYVDP 74 (83)
T ss_pred CHHHHHHHHHhcCCceEEEEEcCCCEEEEEEEECCCCEEEEEEcC
Confidence 6788889999999877 344567899999999986543
No 110
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=66.75 E-value=5.4 Score=19.91 Aligned_cols=14 Identities=7% Similarity=0.404 Sum_probs=11.5
Q ss_pred CCHHHHHHHHHhhh
Q 044588 22 SKATNVVQFYKTTS 35 (117)
Q Consensus 22 ~D~~~a~~FY~~~f 35 (117)
+|.++|+++|+++|
T Consensus 13 g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 13 GDYEKAIEYYEQAL 26 (36)
T ss_dssp T-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 48999999999976
No 111
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=57.12 E-value=30 Score=18.86 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=21.0
Q ss_pred cceEEEEEeCCHHHHHHHHHhCCCee
Q 044588 63 IGCVLCLEIDDVEAALAKAMSGGVWA 88 (117)
Q Consensus 63 ~~~~l~l~v~dvd~~~~~~~~~G~~v 88 (117)
+...+.+.+++.+.+.+.+.++|.++
T Consensus 39 ~~~~v~~~ve~~~~~~~~L~~~G~~v 64 (65)
T cd04882 39 GKALLIFRTEDIEKAIEVLQERGVEL 64 (65)
T ss_pred CeEEEEEEeCCHHHHHHHHHHCCceE
Confidence 34567888999999999999998653
No 112
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=45.39 E-value=98 Score=21.31 Aligned_cols=25 Identities=28% Similarity=0.260 Sum_probs=19.2
Q ss_pred ceEEEEECCCCCeEEEecccCCCCc
Q 044588 90 GRVGKVKDPCGFTWLIYSPVKKCAD 114 (117)
Q Consensus 90 ~r~~~v~DP~G~~w~l~~~~~~~~~ 114 (117)
.|--++.|++|.+..++........
T Consensus 120 ~R~TfvId~dG~I~~~~~~v~~~~h 144 (157)
T COG1225 120 ERSTFVIDPDGKIRYVWRKVKVKGH 144 (157)
T ss_pred cceEEEECCCCeEEEEecCCCCccc
Confidence 5777999999999999955554433
No 113
>PF09142 TruB_C: tRNA Pseudouridine synthase II, C terminal; InterPro: IPR015225 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. The C-terminal domain adopts a secondary structure consisting of a four-stranded beta sheet and one alpha helix, similar to that found in PUA domains. It is predominantly involved in RNA-binding, being mostly found in tRNA pseudouridine synthase B (TruB) []. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1SGV_B.
Probab=44.67 E-value=57 Score=18.26 Aligned_cols=38 Identities=13% Similarity=0.026 Sum_probs=20.4
Q ss_pred CHHHHHHHHHhCCCee----eceEEEEECCCCCeEEEecccC
Q 044588 73 DVEAALAKAMSGGVWA----TGRVGKVKDPCGFTWLIYSPVK 110 (117)
Q Consensus 73 dvd~~~~~~~~~G~~v----g~r~~~v~DP~G~~w~l~~~~~ 110 (117)
++++.-++.+..|-.+ ..-..-+.+|+|..+.|.+...
T Consensus 5 ~ls~~ea~~l~~Gr~l~~~~~~g~~aa~~pdG~lvAL~~~~g 46 (56)
T PF09142_consen 5 ELSAEEARDLRHGRRLPAAGPPGPVAAFAPDGRLVALLEERG 46 (56)
T ss_dssp E--HHHHHHHHTT---B-----S-EEEE-TTS-EEEEEEEET
T ss_pred ECCHHHHHHHhCCCccCCCCCCceEEEECCCCcEEEEEEccC
Confidence 4455556677888766 2234568899999999986543
No 114
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=43.70 E-value=56 Score=18.25 Aligned_cols=24 Identities=8% Similarity=0.057 Sum_probs=18.2
Q ss_pred eEEEEEeCCHHHHHHHHHhCCCee
Q 044588 65 CVLCLEIDDVEAALAKAMSGGVWA 88 (117)
Q Consensus 65 ~~l~l~v~dvd~~~~~~~~~G~~v 88 (117)
+.+.+.+++.+.+.+.+.++|.++
T Consensus 45 v~i~v~~~~~~~~~~~L~~~G~~v 68 (72)
T cd04883 45 LVFRVQTMNPRPIIEDLRRAGYEV 68 (72)
T ss_pred EEEEEecCCHHHHHHHHHHCCCee
Confidence 455555568889999999999775
No 115
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=43.29 E-value=84 Score=19.86 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=18.1
Q ss_pred eEEEEECCCCCeEEEecccCCCCc
Q 044588 91 RVGKVKDPCGFTWLIYSPVKKCAD 114 (117)
Q Consensus 91 r~~~v~DP~G~~w~l~~~~~~~~~ 114 (117)
+..++.|++|.............+
T Consensus 111 p~~~lid~~G~v~~~~~g~~~~~~ 134 (140)
T cd03017 111 RSTFLIDPDGKIVKVWRKVKPKGH 134 (140)
T ss_pred eeEEEECCCCEEEEEEecCCccch
Confidence 577999999999888766554443
No 116
>TIGR01643 YD_repeat_2x YD repeat (two copies). This model describes two tandem copies of a 21-residue extracellular repeat found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin.
Probab=36.24 E-value=56 Score=16.42 Aligned_cols=18 Identities=17% Similarity=-0.003 Sum_probs=8.6
Q ss_pred eEEEEECCCCCeEEEecc
Q 044588 91 RVGKVKDPCGFTWLIYSP 108 (117)
Q Consensus 91 r~~~v~DP~G~~w~l~~~ 108 (117)
.+.+-.|..|++.....+
T Consensus 17 ~~~~~YD~~Grl~~~tdp 34 (42)
T TIGR01643 17 TTRYTYDAAGRLVEITDA 34 (42)
T ss_pred EEEEEECCCCCEEEEECC
Confidence 344444555555554443
No 117
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.70 E-value=95 Score=18.35 Aligned_cols=28 Identities=21% Similarity=0.107 Sum_probs=20.1
Q ss_pred HHHHHHHhCCCee--------ece---EEEEECCCCCeE
Q 044588 76 AALAKAMSGGVWA--------TGR---VGKVKDPCGFTW 103 (117)
Q Consensus 76 ~~~~~~~~~G~~v--------g~r---~~~v~DP~G~~w 103 (117)
++..-+.+.|..+ |.| .++++|++|+.+
T Consensus 17 ~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl 55 (72)
T cd04895 17 EAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKL 55 (72)
T ss_pred HHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCC
Confidence 4445556778777 554 679999999875
No 118
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=35.58 E-value=83 Score=17.52 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=18.8
Q ss_pred eEEEEEeCCHHHHHHHHHhCCCee
Q 044588 65 CVLCLEIDDVEAALAKAMSGGVWA 88 (117)
Q Consensus 65 ~~l~l~v~dvd~~~~~~~~~G~~v 88 (117)
..+.+.++|.+++.+.+.++|.++
T Consensus 41 ~~~rl~~~~~~~~~~~L~~~G~~v 64 (66)
T cd04908 41 GILRLIVSDPDKAKEALKEAGFAV 64 (66)
T ss_pred CEEEEEECCHHHHHHHHHHCCCEE
Confidence 466667789889999888888764
No 119
>KOG2454 consensus Betaine aldehyde dehydrogenase [Energy production and conversion]
Probab=35.33 E-value=15 Score=29.38 Aligned_cols=34 Identities=26% Similarity=0.409 Sum_probs=28.4
Q ss_pred eCCHHHHHHHHHhCCCee---eceEEEEECCCCCeEE
Q 044588 71 IDDVEAALAKAMSGGVWA---TGRVGKVKDPCGFTWL 104 (117)
Q Consensus 71 v~dvd~~~~~~~~~G~~v---g~r~~~v~DP~G~~w~ 104 (117)
.|.++...+.++++|+++ |.|++..++|-|+.+.
T Consensus 382 fdhLesLv~DAv~KGArl~~gGsrF~Hpkyp~g~YF~ 418 (583)
T KOG2454|consen 382 FDHLESLVNDAVDKGARLAVGGSRFGHPKYPVGQYFP 418 (583)
T ss_pred hHHHHHHHHHHHhhcchhhhcccccCCCCCCcccccC
Confidence 456778888899999988 7889999999998763
No 120
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.13 E-value=1.2e+02 Score=22.33 Aligned_cols=20 Identities=15% Similarity=0.370 Sum_probs=17.2
Q ss_pred CHHHHHHHHHhhhCeEEEEc
Q 044588 23 KATNVVQFYKTTSGAQLEIA 42 (117)
Q Consensus 23 D~~~a~~FY~~~fG~~l~~~ 42 (117)
|..+++.||.+.||.++.-+
T Consensus 146 ~~~e~a~wy~dyLGleie~~ 165 (246)
T KOG4657|consen 146 DIHEAASWYNDYLGLEIEAG 165 (246)
T ss_pred ccHHHHHHHHHhcCceeeec
Confidence 67788999999999888755
No 121
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=33.81 E-value=41 Score=15.89 Aligned_cols=13 Identities=15% Similarity=0.526 Sum_probs=11.2
Q ss_pred CCHHHHHHHHHhh
Q 044588 22 SKATNVVQFYKTT 34 (117)
Q Consensus 22 ~D~~~a~~FY~~~ 34 (117)
.|..+|..||+++
T Consensus 19 ~d~~~A~~~~~~A 31 (36)
T smart00671 19 KDLEKALEYYKKA 31 (36)
T ss_pred cCHHHHHHHHHHH
Confidence 3899999999875
No 122
>PRK06704 RNA polymerase factor sigma-70; Validated
Probab=33.75 E-value=54 Score=23.73 Aligned_cols=35 Identities=11% Similarity=0.089 Sum_probs=23.7
Q ss_pred eCCHHHHHHHHHhCCCee------e-ceEEEEECCCCCeEEEec
Q 044588 71 IDDVEAALAKAMSGGVWA------T-GRVGKVKDPCGFTWLIYS 107 (117)
Q Consensus 71 v~dvd~~~~~~~~~G~~v------g-~r~~~v~DP~G~~w~l~~ 107 (117)
-+|.+..++ ++ .|.++ | ..++.++||+||..+++.
T Consensus 186 ~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (228)
T PRK06704 186 EERPELLTK-LL-PTIDFTKLPSKQPVLLFNVKQPSSYSCMLCV 227 (228)
T ss_pred hcCHHHHHH-Hh-ccceeeecccccceEEEEeeCCCccchhhcc
Confidence 345566666 33 45555 3 357899999999988763
No 123
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=33.67 E-value=95 Score=18.48 Aligned_cols=26 Identities=12% Similarity=0.132 Sum_probs=21.2
Q ss_pred cceEEEEEeCC----HHHHHHHHHhCCCee
Q 044588 63 IGCVLCLEIDD----VEAALAKAMSGGVWA 88 (117)
Q Consensus 63 ~~~~l~l~v~d----vd~~~~~~~~~G~~v 88 (117)
..+.+.++++| ++.+.+.+.++|.++
T Consensus 40 ~~v~i~ie~~~~~~~~~~i~~~L~~~G~~~ 69 (85)
T cd04906 40 AHIFVGVSVANGAEELAELLEDLKSAGYEV 69 (85)
T ss_pred eEEEEEEEeCCcHHHHHHHHHHHHHCCCCe
Confidence 45778889888 889999999998764
No 124
>PF13351 DUF4099: Protein of unknown function (DUF4099)
Probab=32.85 E-value=87 Score=19.04 Aligned_cols=27 Identities=30% Similarity=0.474 Sum_probs=22.4
Q ss_pred ceEEEEECCCCCeEEEecccCCCCccc
Q 044588 90 GRVGKVKDPCGFTWLIYSPVKKCADVE 116 (117)
Q Consensus 90 ~r~~~v~DP~G~~w~l~~~~~~~~~~~ 116 (117)
.|...++|++|..--...+..+.++.|
T Consensus 55 arlsl~~~~dG~v~l~i~~ir~ep~le 81 (85)
T PF13351_consen 55 ARLSLVRDEDGNVDLMIHPIRKEPELE 81 (85)
T ss_pred eEEEEEECCCCCEEEEEeeeecccccC
Confidence 578999999999988888877777665
No 125
>PF10706 Aminoglyc_resit: Aminoglycoside-2''-adenylyltransferase; InterPro: IPR019646 Aminoglycoside-2''-adenylyltransferase is conserved in Bacteria. It confers resistance to kanamycin, gentamicin, and tobramycin []. The protein is also produced by plasmids in various bacterial species and confers resistance to essentially all clinically available aminoglycosides except streptomycin, and it eliminates the synergism between aminoglycosides and cell-wall active agents []. ; PDB: 4E8I_A 4E8J_B.
Probab=32.71 E-value=1.6e+02 Score=20.71 Aligned_cols=43 Identities=16% Similarity=-0.002 Sum_probs=32.3
Q ss_pred cceEEEEEeCCHHHHHHHHHhCCCee--eceEEEEECCCCCeEEE
Q 044588 63 IGCVLCLEIDDVEAALAKAMSGGVWA--TGRVGKVKDPCGFTWLI 105 (117)
Q Consensus 63 ~~~~l~l~v~dvd~~~~~~~~~G~~v--g~r~~~v~DP~G~~w~l 105 (117)
..+-+.+..++.++..+.|.+.|.++ ...+.++.++.|..+.+
T Consensus 43 ~DiDi~~~~~~~~~l~~~L~~~G~~ite~~~~~~l~~~~g~llDl 87 (174)
T PF10706_consen 43 RDIDIFVPREDQAELRALLKELGYRITETTDYGFLADDDGRLLDL 87 (174)
T ss_dssp SEEEEEEEGGGHHHHHHHHHHTT-EEEEEETEEEEEETTTEEEEE
T ss_pred CCeEEEEEcchhHHHHHHHHHCCCEEEEeccccEEEcCCCCEEEe
Confidence 45777777889999999999999987 34466788888866554
No 126
>PF08379 Bact_transglu_N: Bacterial transglutaminase-like N-terminal region; InterPro: IPR013589 This region is found towards the N terminus of various archaeal and bacterial hypothetical proteins. Some of these are annotated as being transglutaminase-like proteins, and in fact contain a transglutaminase-like superfamily domain (IPR002931 from INTERPRO).
Probab=32.18 E-value=70 Score=18.85 Aligned_cols=22 Identities=23% Similarity=0.075 Sum_probs=18.2
Q ss_pred eEEEEECCCCCeEEEecccCCC
Q 044588 91 RVGKVKDPCGFTWLIYSPVKKC 112 (117)
Q Consensus 91 r~~~v~DP~G~~w~l~~~~~~~ 112 (117)
+.....|.|||.+..+.-..+.
T Consensus 48 ~~~~~~D~fGN~v~~~~~~~ph 69 (82)
T PF08379_consen 48 RVREYTDFFGNRVHRFSFPEPH 69 (82)
T ss_pred EEEEEECCCCCEEEEEEECCCc
Confidence 7889999999999988766554
No 127
>PRK09732 hypothetical protein; Provisional
Probab=31.69 E-value=1.5e+02 Score=19.74 Aligned_cols=31 Identities=16% Similarity=-0.001 Sum_probs=22.6
Q ss_pred HHHHHHHHhCCCeeeceEEEEECCCCCeEEEecc
Q 044588 75 EAALAKAMSGGVWATGRVGKVKDPCGFTWLIYSP 108 (117)
Q Consensus 75 d~~~~~~~~~G~~vg~r~~~v~DP~G~~w~l~~~ 108 (117)
+++.+++.+.|..+ ...|.|+.|+++.+..-
T Consensus 17 ~aA~~~A~~~g~~v---~iaVvD~~G~l~a~~Rm 47 (134)
T PRK09732 17 AAGQEEAQKNNWSV---SIAVADDGGHLLALSRM 47 (134)
T ss_pred HHHHHHHHHhCCCE---EEEEEcCCCCEEEEEEc
Confidence 45566667776543 67899999999888653
No 128
>PF11520 Cren7: Chromatin protein Cren7; InterPro: IPR020906 Cren7 is a chromatin protein found in Crenarchaeota and has a higher affinity for double-stranded DNA than for single-stranded DNA. The protein contains negative DNA supercoils and is associated with genomic DNA in vivo. Cren7 interacts with duplex DNA through a beta-sheet and a long flexible loop. Its binding to double-stranded DNA is without sequence specificity. There is approximately 1 Cren7 molecule for 12 bp of DNA. The function of Cren7 has not been completely determined but it is thought that the protein may have a role similar to that of archaeal proteins in Euryarchaea [].; GO: 0003690 double-stranded DNA binding, 0005737 cytoplasm; PDB: 3KXT_A 3LWH_A 3LWI_A 2JTM_A.
Probab=31.13 E-value=49 Score=19.04 Aligned_cols=17 Identities=29% Similarity=0.378 Sum_probs=10.1
Q ss_pred eceEEEEECCC-CCeEEE
Q 044588 89 TGRVGKVKDPC-GFTWLI 105 (117)
Q Consensus 89 g~r~~~v~DP~-G~~w~l 105 (117)
|-..+.|+||+ |..+.=
T Consensus 36 GV~igLFk~P~tGk~fR~ 53 (60)
T PF11520_consen 36 GVKIGLFKDPETGKYFRK 53 (60)
T ss_dssp -EEEEEEE-TTT--EEEE
T ss_pred ceEEEEEeCCCCCcchhh
Confidence 56688999999 887653
No 129
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=30.06 E-value=78 Score=25.86 Aligned_cols=32 Identities=22% Similarity=0.126 Sum_probs=24.6
Q ss_pred HHHHHHHHHhCCCee---------eceEEEEECCCCCeEEEe
Q 044588 74 VEAALAKAMSGGVWA---------TGRVGKVKDPCGFTWLIY 106 (117)
Q Consensus 74 vd~~~~~~~~~G~~v---------g~r~~~v~DP~G~~w~l~ 106 (117)
+.++++ |.++|.++ |++.+..+|+||+..+-.
T Consensus 13 L~~a~~-La~~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~g 53 (485)
T COG3349 13 LAAAYE-LADAGYDVTLYEARDRLGGKVASWRDSDGNHVEHG 53 (485)
T ss_pred HHHHHH-HHhCCCceEEEeccCccCceeeeeecCCCCeeeee
Confidence 344555 67888877 889999999999987643
No 130
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=30.01 E-value=51 Score=15.45 Aligned_cols=13 Identities=8% Similarity=0.396 Sum_probs=10.6
Q ss_pred CHHHHHHHHHhhh
Q 044588 23 KATNVVQFYKTTS 35 (117)
Q Consensus 23 D~~~a~~FY~~~f 35 (117)
+.++|+..|++++
T Consensus 16 ~~~~A~~~~~~al 28 (34)
T PF00515_consen 16 DYEEALEYYQRAL 28 (34)
T ss_dssp -HHHHHHHHHHHH
T ss_pred CchHHHHHHHHHH
Confidence 7899999999875
No 131
>PHA02978 hypothetical protein; Provisional
Probab=29.36 E-value=63 Score=21.02 Aligned_cols=19 Identities=21% Similarity=0.235 Sum_probs=16.6
Q ss_pred eEEEEECCCCCeEEEeccc
Q 044588 91 RVGKVKDPCGFTWLIYSPV 109 (117)
Q Consensus 91 r~~~v~DP~G~~w~l~~~~ 109 (117)
-|+...||+|..+++.++.
T Consensus 75 iy~sy~~~~gisiqvst~~ 93 (135)
T PHA02978 75 IYFSYADPDGISIQVSTPK 93 (135)
T ss_pred EEEEecCCCceEEEEeCCC
Confidence 5889999999999998775
No 132
>PF07045 DUF1330: Protein of unknown function (DUF1330); InterPro: IPR010753 This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.; PDB: 2FIU_B 3HHL_A 3DCA_D 3LO3_I.
Probab=27.93 E-value=82 Score=17.82 Aligned_cols=20 Identities=5% Similarity=0.061 Sum_probs=16.5
Q ss_pred ceeEEEEecCCCHHHHHHHHHh
Q 044588 12 GMKPQLLVEESKATNVVQFYKT 33 (117)
Q Consensus 12 ~~~p~L~v~~~D~~~a~~FY~~ 33 (117)
.....|-++ +.+++.+||.+
T Consensus 39 ~~~viieFP--s~~aa~~~~~s 58 (65)
T PF07045_consen 39 DRVVIIEFP--SMEAAKAWYNS 58 (65)
T ss_dssp SEEEEEEES--SHHHHHHHHCS
T ss_pred CeEEEEECC--CHHHHHHHHCC
Confidence 456678889 99999999975
No 133
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=27.68 E-value=59 Score=14.97 Aligned_cols=14 Identities=0% Similarity=0.351 Sum_probs=10.9
Q ss_pred CCHHHHHHHHHhhh
Q 044588 22 SKATNVVQFYKTTS 35 (117)
Q Consensus 22 ~D~~~a~~FY~~~f 35 (117)
++.++|++.|++++
T Consensus 15 ~~~~~A~~~~~~al 28 (34)
T PF07719_consen 15 GNYEEAIEYFEKAL 28 (34)
T ss_dssp T-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 37899999999875
No 134
>PF15000 TUSC2: Tumour suppressor candidate 2
Probab=26.50 E-value=55 Score=21.25 Aligned_cols=27 Identities=19% Similarity=0.363 Sum_probs=18.0
Q ss_pred cCCCcceeEEE-------EecCCCHHHHHHHHHhh
Q 044588 7 LANFMGMKPQL-------LVEESKATNVVQFYKTT 34 (117)
Q Consensus 7 ~~~~~~~~p~L-------~v~~~D~~~a~~FY~~~ 34 (117)
+.......|++ +++. |-+.|.+||+++
T Consensus 36 ~~~~r~~~pfV~tr~sS~y~De-DGdlAhEFYeE~ 69 (111)
T PF15000_consen 36 VRPTRGATPFVFTRRSSMYFDE-DGDLAHEFYEEV 69 (111)
T ss_pred ccccccccccEEecCCceeEcC-Ccchhhhhhhhh
Confidence 34444556644 4442 899999999993
No 135
>cd01205 WASP WASP-type EVH1 domain. WASP-type EVH1 domain. Wiskott-Aldrich syndrome (WAS) is an X-linked recessive disease, characterized by eczema, immunodeficiency, and thrombocytopenia. The majority of patients with WAS, or a milder version of the disorder, X-linked thrombocytopenia (XLT), have point mutations in the EVH1 domain of WASP (Wiskott-Aldrich syndrome protein). WASP is an actin regulatory protein consisting of an N-terminal EVH1 domain, a basic region, a GTP binding domain, a proline rich region and a WH2 acidic region. Yeast members lack the GTP binding domain. WASP binds a 25 residue proline rich motif from the WASP Interacting Protein (WIP) via its N-terminal EVH1 domain.
Probab=26.29 E-value=73 Score=20.44 Aligned_cols=20 Identities=20% Similarity=0.149 Sum_probs=16.1
Q ss_pred eEEEEecCCCHHHHHHHHHhhh
Q 044588 14 KPQLLVEESKATNVVQFYKTTS 35 (117)
Q Consensus 14 ~p~L~v~~~D~~~a~~FY~~~f 35 (117)
..-|.+. |-++|..||+++.
T Consensus 83 ~~GL~Fa--de~EA~~F~k~v~ 102 (105)
T cd01205 83 VVGLNFA--DETEAAEFRKKVL 102 (105)
T ss_pred EEEEEEC--CHHHHHHHHHHHH
Confidence 4456787 9999999999874
No 136
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=25.97 E-value=84 Score=22.02 Aligned_cols=45 Identities=18% Similarity=0.123 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHhC-CCeeec--e---EEEEECCCCCeEEEecccCCCCccc
Q 044588 72 DDVEAALAKAMSG-GVWATG--R---VGKVKDPCGFTWLIYSPVKKCADVE 116 (117)
Q Consensus 72 ~dvd~~~~~~~~~-G~~vg~--r---~~~v~DP~G~~w~l~~~~~~~~~~~ 116 (117)
++.+.+|+-|.+. ++.+|. + .=++.||+|+.+.=+.+...+-|++
T Consensus 112 ~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ptt~p~~~~ 162 (171)
T KOG1651|consen 112 DNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFSPTTSPLDIE 162 (171)
T ss_pred CCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeCCCCCccccc
Confidence 3777888877543 333321 1 2289999999999999887766654
No 137
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=25.83 E-value=1.9e+02 Score=18.71 Aligned_cols=20 Identities=20% Similarity=0.240 Sum_probs=15.9
Q ss_pred eEEEEECCCCCeEEEecccC
Q 044588 91 RVGKVKDPCGFTWLIYSPVK 110 (117)
Q Consensus 91 r~~~v~DP~G~~w~l~~~~~ 110 (117)
+..++.||+|.+........
T Consensus 121 ~~~~lid~~G~i~~~~~g~~ 140 (154)
T PRK09437 121 RISFLIDADGKIEHVFDKFK 140 (154)
T ss_pred eEEEEECCCCEEEEEEcCCC
Confidence 45689999999998886543
No 138
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=25.60 E-value=24 Score=19.27 Aligned_cols=14 Identities=21% Similarity=0.268 Sum_probs=12.5
Q ss_pred CHHHHHHHHHhhhC
Q 044588 23 KATNVVQFYKTTSG 36 (117)
Q Consensus 23 D~~~a~~FY~~~fG 36 (117)
+++...+||+..|-
T Consensus 21 ~vd~~kDWYktMFk 34 (47)
T PF02208_consen 21 NVDRPKDWYKTMFK 34 (47)
T ss_pred cccchhHHHHHHHH
Confidence 78999999999885
No 139
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=25.35 E-value=73 Score=14.75 Aligned_cols=14 Identities=0% Similarity=0.313 Sum_probs=11.6
Q ss_pred CCHHHHHHHHHhhh
Q 044588 22 SKATNVVQFYKTTS 35 (117)
Q Consensus 22 ~D~~~a~~FY~~~f 35 (117)
+|.++|.+.|++++
T Consensus 15 ~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 15 GDYEEALEYFEKAL 28 (34)
T ss_dssp TSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 38899999998875
No 140
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=24.22 E-value=1e+02 Score=20.51 Aligned_cols=26 Identities=15% Similarity=0.351 Sum_probs=21.3
Q ss_pred cceEEEEEeCCHHHHHHHHHhCCCee
Q 044588 63 IGCVLCLEIDDVEAALAKAMSGGVWA 88 (117)
Q Consensus 63 ~~~~l~l~v~dvd~~~~~~~~~G~~v 88 (117)
.-..+.+.++|+|+....+.++|..+
T Consensus 108 ~KAlli~r~ed~d~~~~aLed~gi~~ 133 (142)
T COG4747 108 QKALLIVRVEDIDRAIKALEDAGIKL 133 (142)
T ss_pred ceEEEEEEhhHHHHHHHHHHHcCCee
Confidence 34567788999999999999998765
No 141
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=23.34 E-value=51 Score=15.91 Aligned_cols=12 Identities=8% Similarity=0.390 Sum_probs=10.6
Q ss_pred CHHHHHHHHHhh
Q 044588 23 KATNVVQFYKTT 34 (117)
Q Consensus 23 D~~~a~~FY~~~ 34 (117)
|.++|..||+++
T Consensus 23 d~~~A~~~~~~A 34 (39)
T PF08238_consen 23 DYEKAFKWYEKA 34 (39)
T ss_dssp HHHHHHHHHHHH
T ss_pred cccchHHHHHHH
Confidence 789999999875
No 142
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=23.05 E-value=1.7e+02 Score=23.26 Aligned_cols=45 Identities=24% Similarity=0.177 Sum_probs=30.9
Q ss_pred cceEEEEEeC---CHHHHHHHHHhCCCee-e-ceEEEEECCCCCeEEEec
Q 044588 63 IGCVLCLEID---DVEAALAKAMSGGVWA-T-GRVGKVKDPCGFTWLIYS 107 (117)
Q Consensus 63 ~~~~l~l~v~---dvd~~~~~~~~~G~~v-g-~r~~~v~DP~G~~w~l~~ 107 (117)
.|+++.+.++ |..+.+++++++|..+ . +.++...++..+.+.|+-
T Consensus 385 gG~flwl~l~~~~~~~~l~~~a~~~gv~i~~~g~~f~~~~~~~~~~Rl~~ 434 (459)
T COG1167 385 GGLFLWLELPEGIDARELLAAALEKGVVVTPLGSAFSADGDPRNGLRLSF 434 (459)
T ss_pred ceEEEEEEcCCCCCHHHHHHHHHHCCCEEEcCCccccCCCCCCCeEEEEc
Confidence 6889999887 5678899999999988 3 444444443455555543
No 143
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=22.78 E-value=1.5e+02 Score=21.34 Aligned_cols=84 Identities=23% Similarity=0.230 Sum_probs=44.0
Q ss_pred eeEEEEecCCCHHHHHHHHHhhhC-eEEEEcCeEEEEecCCCCCccccCCCcceEEEEEe-CCHHHHHHHHHhC------
Q 044588 13 MKPQLLVEESKATNVVQFYKTTSG-AQLEIAGSTFLVSNFSNDSAAAKNMGIGCVLCLEI-DDVEAALAKAMSG------ 84 (117)
Q Consensus 13 ~~p~L~v~~~D~~~a~~FY~~~fG-~~l~~~~~~l~~~~~~~~g~~~~~~~~~~~l~l~v-~dvd~~~~~~~~~------ 84 (117)
+.|...+. +.+++.+..+++-. +-+++.+..+..- .. . .++.+.+.- +++.++|+++.+.
T Consensus 26 ~~~~~~~~--~~~ea~~~a~~ig~PvvlKi~sp~i~HK--------sd-~-GgV~L~l~~~~~v~~a~~~l~~~~~~~~p 93 (222)
T PF13549_consen 26 VPPTRLVT--SAEEAVAAAEEIGFPVVLKIVSPDIAHK--------SD-V-GGVRLNLNSPEEVREAFERLRERVAAHHP 93 (222)
T ss_dssp ----EEES--SHHHHHHHHHHH-SSEEEEEE-TT---H--------HH-H-T-EEEEE-SHHHHHHHHHHHHHHHHHH-T
T ss_pred CCCeeEeC--CHHHHHHHHHHhCCCEEEEEecCCCCcC--------CC-C-CcEEECCCCHHHHHHHHHHHHHHHHHhCC
Confidence 35566677 99999999888522 4444433222110 00 1 577777763 4666666666543
Q ss_pred -----CCee-------e--ceEEEEECC-CCCeEEEecc
Q 044588 85 -----GVWA-------T--GRVGKVKDP-CGFTWLIYSP 108 (117)
Q Consensus 85 -----G~~v-------g--~r~~~v~DP-~G~~w~l~~~ 108 (117)
|..+ | -..+..+|| ||-.+.+..-
T Consensus 94 ~~~~~gvlVq~m~~~~g~El~vG~~~Dp~FGPvv~~G~G 132 (222)
T PF13549_consen 94 GARIDGVLVQEMAPSGGRELIVGVRRDPQFGPVVMFGLG 132 (222)
T ss_dssp T----EEEEEE------EEEEEEEEEETTTEEEEEEEE-
T ss_pred CCccceEEEEEcccCCcEEEEEEEEECCCCCCEEEEcCC
Confidence 2222 1 136688888 8888887653
No 144
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=22.74 E-value=80 Score=15.12 Aligned_cols=15 Identities=0% Similarity=0.138 Sum_probs=11.0
Q ss_pred CCHHHHHHHHHhhhC
Q 044588 22 SKATNVVQFYKTTSG 36 (117)
Q Consensus 22 ~D~~~a~~FY~~~fG 36 (117)
++.++|.++|++++.
T Consensus 16 g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 16 GRYEEALELLEEALE 30 (42)
T ss_dssp T-HHHHHHHHHHHHH
T ss_pred hhcchhhHHHHHHHH
Confidence 378888888888765
No 145
>KOG1249 consensus Predicted GTPases [General function prediction only]
Probab=22.55 E-value=59 Score=27.00 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=20.3
Q ss_pred eEEEEecCCCHHHHHHHHHhhhCeEEE
Q 044588 14 KPQLLVEESKATNVVQFYKTTSGAQLE 40 (117)
Q Consensus 14 ~p~L~v~~~D~~~a~~FY~~~fG~~l~ 40 (117)
..+|.+.....++|-+||++.||..+.
T Consensus 433 s~~Lplhi~~t~~Ae~~y~~~~G~rll 459 (572)
T KOG1249|consen 433 SEQLPLHIGPTEEAEAFYEKHLGTRLL 459 (572)
T ss_pred cCcceeeecchhhHHHHHHHhcCCeee
Confidence 445555555899999999999995554
No 146
>PF11320 DUF3122: Protein of unknown function (DUF3122); InterPro: IPR021469 This family of proteins with unknown function appear to be restricted to Cyanobacteria.
Probab=22.35 E-value=70 Score=21.50 Aligned_cols=19 Identities=16% Similarity=0.260 Sum_probs=15.2
Q ss_pred eEEEEECCCCCeEEEeccc
Q 044588 91 RVGKVKDPCGFTWLIYSPV 109 (117)
Q Consensus 91 r~~~v~DP~G~~w~l~~~~ 109 (117)
..-.++|-+|+.|++.--.
T Consensus 17 S~qsLrD~~g~sWQvV~fk 35 (134)
T PF11320_consen 17 SRQSLRDQDGNSWQVVLFK 35 (134)
T ss_pred eeeeecCCCCCceEEEEEE
Confidence 3558999999999987644
No 147
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=22.14 E-value=1.4e+02 Score=17.25 Aligned_cols=62 Identities=15% Similarity=0.107 Sum_probs=37.8
Q ss_pred EEEecCCCHHHHHHHHHhhhCeEEEEcCeEEEEecCCCCCccccCCCcceEEEEEeCCHHHHHHHHHhCCCee
Q 044588 16 QLLVEESKATNVVQFYKTTSGAQLEIAGSTFLVSNFSNDSAAAKNMGIGCVLCLEIDDVEAALAKAMSGGVWA 88 (117)
Q Consensus 16 ~L~v~~~D~~~a~~FY~~~fG~~l~~~~~~l~~~~~~~~g~~~~~~~~~~~l~l~v~dvd~~~~~~~~~G~~v 88 (117)
+++++ +...|+++++.+-.. |-..-+... | ..-..+-|+.+.+..+|.+.+.+-+.++|..+
T Consensus 5 ~i~F~--st~~a~~~ek~lk~~-----gi~~~liP~-P---~~i~~~CG~al~~~~~d~~~i~~~l~~~~i~~ 66 (73)
T PF11823_consen 5 LITFP--STHDAMKAEKLLKKN-----GIPVRLIPT-P---REISAGCGLALRFEPEDLEKIKEILEENGIEY 66 (73)
T ss_pred EEEEC--CHHHHHHHHHHHHHC-----CCcEEEeCC-C---hhccCCCCEEEEEChhhHHHHHHHHHHCCCCe
Confidence 56677 788888888865322 111111111 1 01123366777777789999999888888765
No 148
>PF09162 Tap-RNA_bind: Tap, RNA-binding; InterPro: IPR015245 This domain adopts a structure consisting of an alpha+beta sandwich with an antiparallel beta-sheet, arranged in a 2(beta-alpha-beta) motif. It is mainly found in mRNA export factors, which mediate the sequence nonspecific nuclear export of cellular mRNAs as well as the sequence-specific export of retroviral mRNAs bearing the constitutive transport element []. ; GO: 0003723 RNA binding, 0006406 mRNA export from nucleus, 0005634 nucleus, 0005737 cytoplasm; PDB: 1FT8_A 1KOH_C 1KOO_C 3RW6_B 3RW7_C 1FO1_A.
Probab=22.03 E-value=2.1e+02 Score=17.75 Aligned_cols=36 Identities=19% Similarity=0.119 Sum_probs=23.8
Q ss_pred EEEEEeCCHHHHHHHHHhCCCeeeceEEEEECCCCCeEEEeccc
Q 044588 66 VLCLEIDDVEAALAKAMSGGVWATGRVGKVKDPCGFTWLIYSPV 109 (117)
Q Consensus 66 ~l~l~v~dvd~~~~~~~~~G~~vg~r~~~v~DP~G~~w~l~~~~ 109 (117)
...|.|+|.+.+.+ |+...-. +.|++|..+.|.-..
T Consensus 46 ~a~FfV~D~~tA~a-Lk~vsrk-------I~~~dg~Ki~I~V~p 81 (88)
T PF09162_consen 46 RAQFFVEDASTASA-LKDVSRK-------ICDEDGFKISIFVNP 81 (88)
T ss_dssp EEEEEESSHHHHHH-HHTTTTT-------EEBTTSBEE--EEEE
T ss_pred EEEEEeCCHHHHHH-HHHCCCc-------eECCCCCEEEEEEcC
Confidence 56788999887755 5655433 478999988887554
No 149
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]
Probab=21.83 E-value=1e+02 Score=23.75 Aligned_cols=20 Identities=15% Similarity=0.400 Sum_probs=15.0
Q ss_pred EEeCCHHHHHHHHHhCCCee
Q 044588 69 LEIDDVEAALAKAMSGGVWA 88 (117)
Q Consensus 69 l~v~dvd~~~~~~~~~G~~v 88 (117)
+.=+.+|+.|+.++++|+.-
T Consensus 263 ISN~~IDriy~~A~~~GA~~ 282 (333)
T COG2605 263 ISNDAIDRIYELALKNGAYG 282 (333)
T ss_pred cCcHHHHHHHHHHHhcCchh
Confidence 44457889999999888644
No 150
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=21.67 E-value=77 Score=20.83 Aligned_cols=24 Identities=13% Similarity=0.076 Sum_probs=18.7
Q ss_pred eceEEEEECCCCCeEEEecccCCC
Q 044588 89 TGRVGKVKDPCGFTWLIYSPVKKC 112 (117)
Q Consensus 89 g~r~~~v~DP~G~~w~l~~~~~~~ 112 (117)
..|..++.|++|.+..........
T Consensus 119 ~~~~tflID~~G~v~~~~~g~~~~ 142 (153)
T TIGR02540 119 WNFWKYLVNPEGQVVKFWRPEEPV 142 (153)
T ss_pred CccEEEEEcCCCcEEEEECCCCCH
Confidence 355689999999999988765443
No 151
>PF07864 DUF1651: Protein of unknown function (DUF1651); InterPro: IPR012447 The proteins in this entry have not been characterised.
Probab=21.48 E-value=1.3e+02 Score=17.64 Aligned_cols=22 Identities=27% Similarity=0.199 Sum_probs=17.3
Q ss_pred EEEECCCCCeEEEecccCCCCc
Q 044588 93 GKVKDPCGFTWLIYSPVKKCAD 114 (117)
Q Consensus 93 ~~v~DP~G~~w~l~~~~~~~~~ 114 (117)
+++.||.+..+..+.+...+.+
T Consensus 2 gWLin~~~~~~~rF~~d~~s~~ 23 (75)
T PF07864_consen 2 GWLINPQRSWVKRFHPDKKSWD 23 (75)
T ss_pred ceeECCCCCeEEEEEECCCCcc
Confidence 6789999999888887665544
No 152
>PF04761 Phage_Treg: Lactococcus bacteriophage putative transcription regulator; InterPro: IPR006848 This family represents a number of putative transcription repressor proteins found in several Lactococcus bacteriophages. Horizontal transfer may account for the presence of similar proteins in Lactococcus species [].
Probab=21.07 E-value=74 Score=17.72 Aligned_cols=13 Identities=31% Similarity=0.491 Sum_probs=10.0
Q ss_pred HHHHHHHHHhhhC
Q 044588 24 ATNVVQFYKTTSG 36 (117)
Q Consensus 24 ~~~a~~FY~~~fG 36 (117)
.+++.+||++-|-
T Consensus 15 ~q~sve~yk~kl~ 27 (57)
T PF04761_consen 15 YQESVEFYKEKLS 27 (57)
T ss_pred HHHHHHHHHHHHH
Confidence 4678999998764
No 153
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=20.52 E-value=81 Score=24.06 Aligned_cols=33 Identities=21% Similarity=0.285 Sum_probs=25.9
Q ss_pred HHHHHHHHhCCCee---------eceEEEEECCCC-CeEEEec
Q 044588 75 EAALAKAMSGGVWA---------TGRVGKVKDPCG-FTWLIYS 107 (117)
Q Consensus 75 d~~~~~~~~~G~~v---------g~r~~~v~DP~G-~~w~l~~ 107 (117)
|+.|+|+-++|.++ +.-...+.-||| +.+.|..
T Consensus 59 d~~w~~vedAGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Iar 101 (340)
T COG4007 59 DEHWKRVEDAGVEVVSDDAEAAEHGEIHVLFTPFGKATFGIAR 101 (340)
T ss_pred HHHHHHHHhcCcEEecCchhhhhcceEEEEecccchhhHHHHH
Confidence 56799999999998 456778899999 6666543
No 154
>PHA00450 host dGTPase inhibitor
Probab=20.11 E-value=2.3e+02 Score=17.43 Aligned_cols=37 Identities=19% Similarity=0.045 Sum_probs=24.8
Q ss_pred CHHHHHHHHHhCCCee------------eceEEEEECCCCCeEEEeccc
Q 044588 73 DVEAALAKAMSGGVWA------------TGRVGKVKDPCGFTWLIYSPV 109 (117)
Q Consensus 73 dvd~~~~~~~~~G~~v------------g~r~~~v~DP~G~~w~l~~~~ 109 (117)
+..++.+|+.+....| --++-.+.|+.|+++.-.+-.
T Consensus 11 afKaA~~RL~q~D~aVi~e~~~~~~~~k~c~~LRvedR~G~~i~s~tfe 59 (85)
T PHA00450 11 AFKAATARLFEHDVAVIVEEFYYENPAKMCMSLRVEDRSGHLIASRTFE 59 (85)
T ss_pred HHHHHHHHHHhcceeEEEeehhccchhhheeEEEEEecCCCEeeeeeee
Confidence 3456677777776655 113468999999998765433
No 155
>PF15533 Toxin_54: Putative toxin 54
Probab=20.05 E-value=1.8e+02 Score=17.11 Aligned_cols=19 Identities=16% Similarity=0.083 Sum_probs=15.4
Q ss_pred eceEEEEECCCCCeEEEec
Q 044588 89 TGRVGKVKDPCGFTWLIYS 107 (117)
Q Consensus 89 g~r~~~v~DP~G~~w~l~~ 107 (117)
+.++=..+|.+|++|..--
T Consensus 34 ~s~yDlykD~~gni~ik~K 52 (66)
T PF15533_consen 34 ISNYDLYKDREGNIYIKPK 52 (66)
T ss_pred cccceeEEcCCCCEEEecC
Confidence 4578899999999998743
Done!