Query 044590
Match_columns 347
No_of_seqs 174 out of 1367
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 08:01:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044590.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044590hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j1r_A Archaeal adhesion filam 9.1 2.6E+02 0.009 15.6 2.4 16 289-304 8-23 (26)
2 2zy9_A Mg2+ transporter MGTE; 7.6 3.9E+02 0.013 25.5 4.7 60 74-133 407-468 (473)
3 3arc_M Photosystem II reaction 6.9 2.6E+02 0.0089 17.0 1.9 15 88-102 7-21 (36)
4 2lat_A Dolichyl-diphosphooligo 6.6 4.9E+02 0.017 15.9 3.1 18 328-345 8-25 (37)
5 1vry_A Glycine receptor alpha- 6.4 4.2E+02 0.014 18.8 3.2 25 117-141 38-62 (76)
6 2k21_A Potassium voltage-gated 6.0 6.7E+02 0.023 19.8 4.3 31 111-141 49-79 (138)
7 1rkl_A Dolichyl-diphosphooligo 5.4 5.4E+02 0.018 15.6 2.7 17 329-345 9-25 (36)
8 4gx0_A TRKA domain protein; me 4.9 1.7E+03 0.059 21.0 7.9 40 302-341 56-95 (565)
9 3j1z_P YIIP, cation efflux fam 4.0 1.8E+03 0.06 19.2 6.6 30 79-108 81-110 (306)
10 3h90_A Ferrous-iron efflux pum 3.8 1.8E+03 0.061 18.8 6.5 51 79-129 72-123 (283)
No 1
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=9.11 E-value=2.6e+02 Score=15.59 Aligned_cols=16 Identities=25% Similarity=0.619 Sum_probs=12.1
Q ss_pred HHHHHHHhhhHHHHHH
Q 044590 289 IFAISMGLACGVFIYV 304 (347)
Q Consensus 289 ~~~il~alAaG~flYV 304 (347)
+.-|..+++++.++|.
T Consensus 8 ~lLIviav~aaVllyl 23 (26)
T 3j1r_A 8 LLLILIAVAAAVLLYT 23 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456778888888886
No 2
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=7.55 E-value=3.9e+02 Score=25.51 Aligned_cols=60 Identities=17% Similarity=0.104 Sum_probs=33.1
Q ss_pred chhHHHHHhhhhhhHHHHHHHHHhcHhHHHHhccCC-CCCCcH-HHHHHHHHHHHHHHHHHH
Q 044590 74 NEGFLVLGTQFAGGVFLGTALMHFLSDANETFGDLT-SKEYPF-AFMLACAGYLFTMLADCA 133 (347)
Q Consensus 74 ~~~~l~~~~~faaGvlLg~a~~hLLPea~e~~~~~~-~~~~p~-~~~~~~~Gf~l~~lle~i 133 (347)
..-.+....++-..+++++.+=-++|=....++-.+ ...-|+ +.+.=..|+++.+.+-.+
T Consensus 407 ~~~~~~v~~a~~~~~~~a~~~g~~~p~~~~~~~~DPa~~s~p~itt~~D~~g~~~~~~~a~~ 468 (473)
T 2zy9_A 407 PLLLPVVGVSLVLIVFFANLVGAMLPFLLRRLGVDPALVSNPLVATLSDVTGLLIYLSVARL 468 (473)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTCCGGGSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccchHHHHHHHHHHHHHHHHHHH
Confidence 344556666666667777766677777666665221 123353 333334566666555443
No 3
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=6.87 E-value=2.6e+02 Score=17.00 Aligned_cols=15 Identities=20% Similarity=0.273 Sum_probs=10.0
Q ss_pred HHHHHHHHHhcHhHH
Q 044590 88 VFLGTALMHFLSDAN 102 (347)
Q Consensus 88 vlLg~a~~hLLPea~ 102 (347)
-|++++++-++|.++
T Consensus 7 ~fiAt~Lfi~iPt~F 21 (36)
T 3arc_M 7 GLIATALFVLVPSVF 21 (36)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 367777777777553
No 4
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=6.61 E-value=4.9e+02 Score=15.85 Aligned_cols=18 Identities=28% Similarity=0.632 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 044590 328 KFLAVVLGVGVIAVVMIW 345 (347)
Q Consensus 328 ~~~~~~lG~~~ma~l~~w 345 (347)
..++.++|...|.++-.+
T Consensus 8 ~~lan~lG~~~~~LIVlY 25 (37)
T 2lat_A 8 AIFANMLGVSLFLLVVLY 25 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 346788898888877654
No 5
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=6.38 E-value=4.2e+02 Score=18.78 Aligned_cols=25 Identities=20% Similarity=0.490 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Q 044590 117 FMLACAGYLFTMLADCAISFVLDKK 141 (347)
Q Consensus 117 ~~~~~~Gf~l~~lle~i~~~~~~~~ 141 (347)
+++.|..|.+.-++|..+-.+..++
T Consensus 38 w~~~C~~FVF~aLlEya~V~y~~r~ 62 (76)
T 1vry_A 38 WLAVCLLFVFSALLEYAAVNFVSRK 62 (76)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6778889999999999876665544
No 6
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=5.99 E-value=6.7e+02 Score=19.77 Aligned_cols=31 Identities=16% Similarity=0.286 Sum_probs=22.3
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 044590 111 KEYPFAFMLACAGYLFTMLADCAISFVLDKK 141 (347)
Q Consensus 111 ~~~p~~~~~~~~Gf~l~~lle~i~~~~~~~~ 141 (347)
+.+..-++++++||+-++.+--++.....++
T Consensus 49 ~~~~ylYIL~vmgffgff~~GImLsYiRSKk 79 (138)
T 2k21_A 49 GKLEALYVLMVLGFFGFFTLGIMLSYIRSKK 79 (138)
T ss_dssp CSSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceeehHHHHHHHHHHHHHHHHHHHhHhhh
Confidence 3444567788889988888888777765544
No 7
>1rkl_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 4 kDa subunit; membrane protein; NMR {Synthetic} SCOP: f.23.30.1
Probab=5.42 E-value=5.4e+02 Score=15.58 Aligned_cols=17 Identities=24% Similarity=0.675 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHhh
Q 044590 329 FLAVVLGVGVIAVVMIW 345 (347)
Q Consensus 329 ~~~~~lG~~~ma~l~~w 345 (347)
.++..+|...|.++..+
T Consensus 9 ~lan~lG~~~~~LIvlY 25 (36)
T 1rkl_A 9 SLAITFGIVMMTLIVIY 25 (36)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46688888888887654
No 8
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=4.94 E-value=1.7e+03 Score=21.02 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=21.2
Q ss_pred HHHHHHHhhhcccCCCCCCCCcchHHHHHHHHHHHHHHHH
Q 044590 302 IYVSINHLLSKGYTPQKTVSVDTPNYKFLAVVLGVGVIAV 341 (347)
Q Consensus 302 lYVa~~eLlp~~~~~~~~~~~~~~~~~~~~~~lG~~~ma~ 341 (347)
+|.++.-+-.-.|-.-.+.+...|+...+..+.|+++++.
T Consensus 56 ~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~ 95 (565)
T 4gx0_A 56 IYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDI 95 (565)
T ss_dssp HHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHT
T ss_pred hheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHH
Confidence 4555555555444322222233466666667777766554
No 9
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=3.98 E-value=1.8e+03 Score=19.24 Aligned_cols=30 Identities=13% Similarity=0.032 Sum_probs=19.8
Q ss_pred HHHhhhhhhHHHHHHHHHhcHhHHHHhccC
Q 044590 79 VLGTQFAGGVFLGTALMHFLSDANETFGDL 108 (347)
Q Consensus 79 ~~~~~faaGvlLg~a~~hLLPea~e~~~~~ 108 (347)
-.+.++..|+++...-+-++-|+.+.+-+.
T Consensus 81 E~l~al~~~~~l~~~~~~i~~eai~~l~~p 110 (306)
T 3j1z_P 81 EPLAALAQSAFIMGSAFLLLFYGGERLLNP 110 (306)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhheecC
Confidence 344566666666666667777888877654
No 10
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=3.78 E-value=1.8e+03 Score=18.79 Aligned_cols=51 Identities=10% Similarity=0.178 Sum_probs=28.6
Q ss_pred HHHhhhhhhHHHHHHHHHhcHhHHHHhccCCCCCCc-HHHHHHHHHHHHHHH
Q 044590 79 VLGTQFAGGVFLGTALMHFLSDANETFGDLTSKEYP-FAFMLACAGYLFTML 129 (347)
Q Consensus 79 ~~~~~faaGvlLg~a~~hLLPea~e~~~~~~~~~~p-~~~~~~~~Gf~l~~l 129 (347)
-.+.+|..|+++...-+-++=|+++.+-+....+.+ ++.....++.++-..
T Consensus 72 E~l~~l~~~~~l~~~~~~i~~eai~~l~~~~~~~~~~~~l~v~~~s~~v~~~ 123 (283)
T 3h90_A 72 ESLAALAQSMFISGSALFLFLTGIQHLISPTPMTDPGVGVIVTIVALICTII 123 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSSCCCCCCCCCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHH
Confidence 344566666666666677888888877654322222 233444455544443
Done!