Query 044590
Match_columns 347
No_of_seqs 174 out of 1367
Neff 7.6
Searched_HMMs 13730
Date Mon Mar 25 08:01:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044590.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044590hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtm1 f.23.35.1 (M:1-36) Pho 8.9 89 0.0065 17.4 1.9 13 89-101 8-20 (36)
2 d2yvxa3 f.57.1.1 (A:276-448) M 7.9 2E+02 0.015 21.7 4.5 57 74-130 109-167 (173)
3 d2axtj1 f.23.32.1 (J:7-40) Pho 7.1 1.9E+02 0.014 15.8 2.7 17 329-345 6-22 (34)
4 d1ppjd2 f.23.11.1 (D:196-241) 4.7 1.7E+02 0.012 17.3 1.6 17 44-60 6-22 (46)
5 d1rkla_ f.23.30.1 (A:) Oligosa 4.0 3.4E+02 0.025 14.6 2.5 16 330-345 10-25 (36)
6 d1jb0j_ f.23.18.1 (J:) Subunit 3.2 4.7E+02 0.034 14.8 2.7 27 285-313 10-36 (41)
7 d1m56d_ f.23.8.1 (D:) Bacteria 2.5 1.8E+02 0.013 16.8 0.2 21 42-62 16-36 (42)
8 d2e74f1 f.23.25.1 (F:1-32) Pet 2.3 5.2E+02 0.038 13.4 3.0 19 197-215 6-24 (32)
9 d1kqfb2 f.23.22.1 (B:246-290) 2.2 6.6E+02 0.048 14.4 2.8 16 291-306 19-34 (45)
10 d1pv7a_ f.38.1.2 (A:) Lactose 2.0 7.3E+02 0.053 18.8 3.7 60 41-100 4-68 (417)
No 1
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=8.87 E-value=89 Score=17.44 Aligned_cols=13 Identities=23% Similarity=0.478 Sum_probs=8.4
Q ss_pred HHHHHHHHhcHhH
Q 044590 89 FLGTALMHFLSDA 101 (347)
Q Consensus 89 lLg~a~~hLLPea 101 (347)
+++++++-++|.+
T Consensus 8 ~iAt~LFilvPt~ 20 (36)
T d2axtm1 8 LIATALFVLVPSV 20 (36)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4667777777744
No 2
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=7.92 E-value=2e+02 Score=21.75 Aligned_cols=57 Identities=18% Similarity=0.131 Sum_probs=31.1
Q ss_pred chhHHHHHhhhhhhHHHHHHHHHhcHhHHHHhccCC-CCCCcH-HHHHHHHHHHHHHHH
Q 044590 74 NEGFLVLGTQFAGGVFLGTALMHFLSDANETFGDLT-SKEYPF-AFMLACAGYLFTMLA 130 (347)
Q Consensus 74 ~~~~l~~~~~faaGvlLg~a~~hLLPea~e~~~~~~-~~~~p~-~~~~~~~Gf~l~~ll 130 (347)
+.-.+....+.-..+.+++.+=-++|--.+.++-.+ ...-|+ +...=..|++..+.+
T Consensus 109 ~~l~~vi~~sl~~~~~ia~~~G~~lPlll~klg~DPA~aS~P~itti~Di~g~~iyf~i 167 (173)
T d2yvxa3 109 PLLLPVVGVSLVLIVFFANLVGAMLPFLLRRLGVDPALVSNPLVATLSDVTGLLIYLSV 167 (173)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCGGGSCSTTHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHHHHHHHHH
Confidence 333445555666667777777778888777766332 122353 223334455554443
No 3
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=7.12 E-value=1.9e+02 Score=15.76 Aligned_cols=17 Identities=41% Similarity=0.767 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHhh
Q 044590 329 FLAVVLGVGVIAVVMIW 345 (347)
Q Consensus 329 ~~~~~lG~~~ma~l~~w 345 (347)
+++.+.|++++.++.++
T Consensus 6 lv~tv~G~~vi~~vG~F 22 (34)
T d2axtj1 6 IVATVAGMGVIVIVGLF 22 (34)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred EeeehhhhhhHhheeee
Confidence 35678888888888764
No 4
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.67 E-value=1.7e+02 Score=17.27 Aligned_cols=17 Identities=12% Similarity=0.215 Sum_probs=9.3
Q ss_pred cchHHHHHHHHHHHHHH
Q 044590 44 KPLILVKIWCLMIIFVG 60 (347)
Q Consensus 44 ~~l~~~ki~~l~~i~~~ 60 (347)
+..+..|++..+.++.+
T Consensus 6 RK~mG~Kv~~~l~~l~~ 22 (46)
T d1ppjd2 6 RKRMGLKMLLMMGLLLP 22 (46)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455577766555443
No 5
>d1rkla_ f.23.30.1 (A:) Oligosaccharyltransferase subunit ost4p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.01 E-value=3.4e+02 Score=14.58 Aligned_cols=16 Identities=25% Similarity=0.775 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHhh
Q 044590 330 LAVVLGVGVIAVVMIW 345 (347)
Q Consensus 330 ~~~~lG~~~ma~l~~w 345 (347)
+.+..|+..|.++-+|
T Consensus 10 ~~i~fgi~mmtliviy 25 (36)
T d1rkla_ 10 LAITFGIVMMTLIVIY 25 (36)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred EEeehhHHHHHHHHHH
Confidence 5678899888888776
No 6
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre, PsaJ {Synechococcus elongatus [TaxId: 32046]}
Probab=3.20 E-value=4.7e+02 Score=14.76 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=18.2
Q ss_pred chhHHHHHHHHhhhHHHHHHHHHHhhhcc
Q 044590 285 VADWIFAISMGLACGVFIYVSINHLLSKG 313 (347)
Q Consensus 285 ~~~~~~~il~alAaG~flYVa~~eLlp~~ 313 (347)
++..+..+-+++.||.++= +|-+.|..
T Consensus 10 tAPVla~~w~~~tAG~lIE--iNRFfPD~ 36 (41)
T d1jb0j_ 10 TAPVLAAIWMTITAGILIE--FNRFYPDL 36 (41)
T ss_dssp BHHHHHHHHHHHHHHHHHH--HHHHSCCC
T ss_pred hhHHHHHHHHHHHHHHHHH--HHhhCchh
Confidence 4566667778888888764 46666654
No 7
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=2.52 E-value=1.8e+02 Score=16.76 Aligned_cols=21 Identities=14% Similarity=0.067 Sum_probs=9.2
Q ss_pred CCcchHHHHHHHHHHHHHHHH
Q 044590 42 RSKPLILVKIWCLMIIFVGTF 62 (347)
Q Consensus 42 ~~~~l~~~ki~~l~~i~~~t~ 62 (347)
++.=+-+++..++.++.+.-+
T Consensus 16 F~gFik~~t~~~i~~i~~lif 36 (42)
T d1m56d_ 16 FAGFVRMVTWAAVVIVAALIF 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 443343444455444444433
No 8
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=2.32 E-value=5.2e+02 Score=13.37 Aligned_cols=19 Identities=37% Similarity=0.632 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 044590 197 LLIVALCFHSVFEGIAIGV 215 (347)
Q Consensus 197 ll~~al~~Hs~~EGlalGv 215 (347)
+...-++|--+|-|.++|+
T Consensus 6 l~aa~lsfglifvgwglga 24 (32)
T d2e74f1 6 LYAALLSFGLIFVGWGLGV 24 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhHHHH
Confidence 3344556666677777765
No 9
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=2.25 E-value=6.6e+02 Score=14.40 Aligned_cols=16 Identities=25% Similarity=0.399 Sum_probs=11.2
Q ss_pred HHHHHhhhHHHHHHHH
Q 044590 291 AISMGLACGVFIYVSI 306 (347)
Q Consensus 291 ~il~alAaG~flYVa~ 306 (347)
++.-.+++|.|=||..
T Consensus 19 ~~~~~~~~~~fHYv~v 34 (45)
T d1kqfb2 19 GFIATFAGLIFHYIGI 34 (45)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhee
Confidence 4445567888888875
No 10
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=1.98 E-value=7.3e+02 Score=18.79 Aligned_cols=60 Identities=15% Similarity=0.147 Sum_probs=0.0
Q ss_pred cCCcchHHHHHHHHHHHHHHHHhhhhccccccc-----chhHHHHHhhhhhhHHHHHHHHHhcHh
Q 044590 41 LRSKPLILVKIWCLMIIFVGTFVGGVSPYFLKW-----NEGFLVLGTQFAGGVFLGTALMHFLSD 100 (347)
Q Consensus 41 ~~~~~l~~~ki~~l~~i~~~t~~G~~iP~~~~~-----~~~~l~~~~~faaGvlLg~a~~hLLPe 100 (347)
+||++.|.+.+...+.-+..+....++|...+. +...=.+...+..+.+++.-+.-.+-|
T Consensus 4 lkn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~D 68 (417)
T d1pv7a_ 4 LKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSD 68 (417)
T ss_dssp HHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!