Query 044591
Match_columns 241
No_of_seqs 116 out of 430
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 08:02:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044591.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044591hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4i95_A Putative uncharacterize 57.5 66 0.0023 25.1 9.8 76 95-184 10-85 (142)
2 4gzv_A Hypothetical protein; A 42.6 1.2E+02 0.0041 23.7 9.2 73 94-179 9-81 (142)
3 1use_A VAsp, vasodilator-stimu 31.9 96 0.0033 19.4 4.9 19 39-57 3-21 (45)
4 3ph0_A ASCE; type III secretio 26.0 1.5E+02 0.005 20.1 5.1 42 41-84 13-64 (67)
5 2uwj_E Type III export protein 23.5 1.1E+02 0.0039 20.9 4.2 43 40-84 15-67 (70)
6 2heo_A Z-DNA binding protein 1 21.5 54 0.0018 21.5 2.3 53 45-103 8-65 (67)
7 1qwd_A Outer membrane lipoprot 21.0 1.2E+02 0.0041 23.7 4.7 33 205-237 114-149 (177)
8 3hty_A Hypothetical protein BT 16.3 1.4E+02 0.0046 21.6 3.5 26 206-232 68-93 (94)
9 3pjy_A Hypothetical signal pep 16.0 72 0.0024 24.5 2.1 15 206-220 69-83 (136)
10 3m7a_A Uncharacterized protein 15.6 74 0.0025 24.6 2.1 15 206-220 83-97 (140)
No 1
>4i95_A Putative uncharacterized protein; lipocalin-like domain of PF13924 family, structural genomics center for structural genomics, JCSG; HET: MSE; 1.81A {Bacteroides eggerthii} PDB: 4gzv_A
Probab=57.45 E-value=66 Score=25.05 Aligned_cols=76 Identities=16% Similarity=0.250 Sum_probs=47.9
Q ss_pred CCcCcEEEEEEeecccccccccccCcccccccCeeEEEEECCCCeEEEEEEEeecCccceeeEEEEEEEEEEcCCceEEE
Q 044591 95 DKVGGTWKLVYSTITILGSKRTKLGLRDFITLGDFFQSIDVAKGKAVNVIKFNVRGLNLLNGQLTIEASFKIASKSRVDI 174 (241)
Q Consensus 95 ~lL~G~W~LvyTt~~~l~s~~~~lG~~~~~~~g~v~Q~Id~~~~~~~N~v~f~~~gl~~l~g~v~v~a~~~~~~~~rv~v 174 (241)
..|.|-|+|..-.+... ..-|. ..-+.++-+|. +.|++.|+.-.. +- ...+...++|+..++....-
T Consensus 10 ~~L~GvWQ~C~y~s~~p----d~~g~---L~psn~lKIlS-dDgtF~Ni~m~~--~~---~aiIt~~GtY~~~SD~~Y~E 76 (142)
T 4i95_A 10 AHLQGIWQLCHYVSENP----DIPGV---LKPSNTFKVLS-DDGRIVNFTIRP--GT---DAIITGYGTYRQISAAAYKE 76 (142)
T ss_dssp CSCCEEEEEEEEECSST----TSCCE---EEEEEEEEEEC-TTSEEEEEECCT--TS---CCEEEEEEEEEEEETTEEEE
T ss_pred ccceeEeEEEEEecCCC----CCceE---eccCccEEEEc-CCCcEEEEEEec--CC---CcEEEEeEEEEecCCcceee
Confidence 45999999987765311 11121 22355777774 678999997652 21 23467789999988887766
Q ss_pred Eeecceechh
Q 044591 175 AYDNSTITPE 184 (241)
Q Consensus 175 ~F~~~~v~~~ 184 (241)
..+.- +.++
T Consensus 77 ~IeKn-i~lp 85 (142)
T 4i95_A 77 SIEKN-IHLP 85 (142)
T ss_dssp EEEEE-SSSG
T ss_pred eeccc-ccCc
Confidence 65554 4443
No 2
>4gzv_A Hypothetical protein; AN eight-stranded beta barrel, lipocalin family, structural joint center for structural genomics, JCSG; 1.95A {Bacteroides ovatus}
Probab=42.63 E-value=1.2e+02 Score=23.66 Aligned_cols=73 Identities=14% Similarity=0.222 Sum_probs=44.2
Q ss_pred CCCcCcEEEEEEeecccccccccccCcccccccCeeEEEEECCCCeEEEEEEEeecCccceeeEEEEEEEEEEcCCceEE
Q 044591 94 LDKVGGTWKLVYSTITILGSKRTKLGLRDFITLGDFFQSIDVAKGKAVNVIKFNVRGLNLLNGQLTIEASFKIASKSRVD 173 (241)
Q Consensus 94 ~~lL~G~W~LvyTt~~~l~s~~~~lG~~~~~~~g~v~Q~Id~~~~~~~N~v~f~~~gl~~l~g~v~v~a~~~~~~~~rv~ 173 (241)
+..|.|-|+|++-...... .. | -...+-++-+|. ++|++.|.+-.... ...+...++|+..++....
T Consensus 9 ~~~L~GvWQ~c~y~~~~~~-~~---~---~l~~s~~~KIlS-~DgtF~N~~m~~~~-----~aiIt~yGtY~l~SD~~Y~ 75 (142)
T 4gzv_A 9 AADLKGIWQLCHYVSESPD-VP---G---ALKPSNTFKVLS-DDGRIVNFTIIPGA-----DAIITGYGTYKQLTDDSYK 75 (142)
T ss_dssp SCCCCEEEEEEEEEESSTT-SC---C---EEEEEEEEEEEC-TTSEEEEEECCTTS-----CCEEEEEEEEEEEETTEEE
T ss_pred cccceEEeEEeeEeecCCC-CC---c---eEeecCceEEEC-CCCcEEEEEEeCCC-----CcEEEEeEEEEecCCCeee
Confidence 4569999998854432100 00 1 012345677785 57899999743222 1246778899999888766
Q ss_pred EEeecc
Q 044591 174 IAYDNS 179 (241)
Q Consensus 174 v~F~~~ 179 (241)
-..++.
T Consensus 76 E~i~kn 81 (142)
T 4gzv_A 76 ESIEKN 81 (142)
T ss_dssp EEEEEE
T ss_pred eeeccc
Confidence 655443
No 3
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=31.86 E-value=96 Score=19.43 Aligned_cols=19 Identities=47% Similarity=0.613 Sum_probs=15.4
Q ss_pred CCChhhHHHHHHHHHHHHh
Q 044591 39 SSDKRTLTQIKTELLQVVQ 57 (241)
Q Consensus 39 ~~~~~~~~~lK~~LL~~ia 57 (241)
+.++.+.+.+|++||.-+.
T Consensus 3 ~~~~~dle~~KqEIL~E~R 21 (45)
T 1use_A 3 SSDYSDLQRVKQELLEEVK 21 (45)
T ss_dssp CCCHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHH
Confidence 3456789999999998776
No 4
>3ph0_A ASCE; type III secretion system, chapero; 2.40A {Aeromonas hydrophila} PDB: 2q1k_A
Probab=26.01 E-value=1.5e+02 Score=20.15 Aligned_cols=42 Identities=21% Similarity=0.294 Sum_probs=28.5
Q ss_pred ChhhHHHHHHHHHHHHhhc----CCCCCCCCh------hhHHHHHHHHHHHHhc
Q 044591 41 DKRTLTQIKTELLQVVQGI----NRGIFGVPS------AKKSEIEALVELLESQ 84 (241)
Q Consensus 41 ~~~~~~~lK~~LL~~ia~t----~rG~~asp~------~~r~~I~~li~~LE~~ 84 (241)
+...+.+++..|.+++... ++|-. |. .+.++|+..+.-||..
T Consensus 13 ~~~~~~~i~~~L~qAl~~vKr~L~~G~~--pqqyQ~~~~Q~~A~eAal~Iie~~ 64 (67)
T 3ph0_A 13 DPVFARELHAQLVQALGDVKRRLLRGGT--QQQYQQWQQEADAIEAGLNIIEKI 64 (67)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5667899999999998866 56754 43 2567888888888764
No 5
>2uwj_E Type III export protein PSCE; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=23.51 E-value=1.1e+02 Score=20.87 Aligned_cols=43 Identities=16% Similarity=0.302 Sum_probs=31.1
Q ss_pred CChhhHHHHHHHHHHHHhhc----CCCCCCCChh------hHHHHHHHHHHHHhc
Q 044591 40 SDKRTLTQIKTELLQVVQGI----NRGIFGVPSA------KKSEIEALVELLESQ 84 (241)
Q Consensus 40 ~~~~~~~~lK~~LL~~ia~t----~rG~~asp~~------~r~~I~~li~~LE~~ 84 (241)
++.....+++..|.++++.. ++|. +|.+ +.++|+..+.-||..
T Consensus 15 ~~~~~~~~i~~~L~qAl~~vKrqL~~G~--~pqqyQ~~~qQ~~AieAal~Iie~i 67 (70)
T 2uwj_E 15 ADGTHAAALRQRLQAALAECRRELARGA--CPERFQFLQQQARALEGGLGILSQL 67 (70)
T ss_dssp SSTHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56678999999999998876 4674 4542 566777777777654
No 6
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=21.47 E-value=54 Score=21.53 Aligned_cols=53 Identities=11% Similarity=0.186 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCC-----hhhHHHHHHHHHHHHhcCCCCCCCCCCCCcCcEEEE
Q 044591 45 LTQIKTELLQVVQGINRGIFGVP-----SAKKSEIEALVELLESQNPTPHPTANLDKVGGTWKL 103 (241)
Q Consensus 45 ~~~lK~~LL~~ia~t~rG~~asp-----~~~r~~I~~li~~LE~~np~~~P~~~~~lL~G~W~L 103 (241)
..+.+.+||++++..++...++. .-.+..|..+|..|+..+-.. . .-.|.|.|
T Consensus 8 m~~~~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~-----~-~~~G~y~l 65 (67)
T 2heo_A 8 GDNLEQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVS-----S-PSPKYWSI 65 (67)
T ss_dssp -CHHHHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEE-----E-EETTEEEE
T ss_pred ccHHHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEe-----c-CCCceEee
Confidence 34568889999986433333210 014788999999999987521 1 12477765
No 7
>1qwd_A Outer membrane lipoprotein BLC; bacterial lipocalin, lipid binding protein; 1.75A {Escherichia coli} SCOP: b.60.1.1 PDB: 2aco_A* 3mbt_A
Probab=20.96 E-value=1.2e+02 Score=23.68 Aligned_cols=33 Identities=21% Similarity=0.443 Sum_probs=23.7
Q ss_pred eEEEEEEecCCeE---EEeCCCCcEEEEEecCCCCC
Q 044591 205 GWLEISYVDDTMR---IGRDDKGNIFILERSSSAGE 237 (241)
Q Consensus 205 g~l~~tYLDedlR---I~Rg~~G~~FV~~R~~~~~~ 237 (241)
+-+-+.++|++-+ ++..+...++||.|.....+
T Consensus 114 ~~y~Vl~tD~~Ya~~~v~~~~~~~~wILsR~p~l~~ 149 (177)
T 1qwd_A 114 GGYNVIALDREYRHALVCGPDRDYLWILSRTPTISD 149 (177)
T ss_dssp EEEEEEEEBTTSSEEEEECSSTTCEEEEESSSSCCH
T ss_pred ceEEEEEECCCeeEEEEecCCCcEEEEEECCCCCCH
Confidence 4556899998833 34446778999999876543
No 8
>3hty_A Hypothetical protein BT_0869; NP_809782.1, structural genomics, joint cente structural genomics, JCSG; HET: MSE GOL; 1.95A {Bacteroides thetaiotaomicron vpi-5482}
Probab=16.33 E-value=1.4e+02 Score=21.64 Aligned_cols=26 Identities=12% Similarity=0.162 Sum_probs=21.0
Q ss_pred EEEEEEecCCeEEEeCCCCcEEEEEec
Q 044591 206 WLEISYVDDTMRIGRDDKGNIFILERS 232 (241)
Q Consensus 206 ~l~~tYLDedlRI~Rg~~G~~FV~~R~ 232 (241)
.|+|-+|+.|-.+- .+.|.+|+|.|.
T Consensus 68 Tf~I~~l~~dsL~L-~~~~~~~~Y~r~ 93 (94)
T 3hty_A 68 TMDIKRLTADSLVL-DNQGMEIRYAKQ 93 (94)
T ss_dssp EEEEEEECSSEEEE-EETTEEEEEEEC
T ss_pred EEEEEecCCceEEE-EcCCeEEEEEec
Confidence 46788888888777 677889999994
No 9
>3pjy_A Hypothetical signal peptide protein; DUF192 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.55A {Sinorhizobium meliloti}
Probab=16.02 E-value=72 Score=24.48 Aligned_cols=15 Identities=13% Similarity=0.215 Sum_probs=12.4
Q ss_pred EEEEEEecCCeEEEe
Q 044591 206 WLEISYVDDTMRIGR 220 (241)
Q Consensus 206 ~l~~tYLDedlRI~R 220 (241)
-||+.|||+|-||..
T Consensus 69 PLDiiFld~~g~Vv~ 83 (136)
T 3pjy_A 69 PLDMLFIASDGTIRT 83 (136)
T ss_dssp CEEEEEECTTSBEEE
T ss_pred ceEEEEECCCCEEEE
Confidence 369999999988864
No 10
>3m7a_A Uncharacterized protein; structural genomics, unknown function, joint center for structural genomics, JCSG; HET: MSE; 1.22A {Novosphingobium aromaticivorans}
Probab=15.61 E-value=74 Score=24.59 Aligned_cols=15 Identities=27% Similarity=0.255 Sum_probs=12.6
Q ss_pred EEEEEEecCCeEEEe
Q 044591 206 WLEISYVDDTMRIGR 220 (241)
Q Consensus 206 ~l~~tYLDedlRI~R 220 (241)
-||+.|||+|-||..
T Consensus 83 PLDiiFid~dg~Vv~ 97 (140)
T 3m7a_A 83 PLDIIFVGLDRRVMN 97 (140)
T ss_dssp CEEEEEECTTSBEEE
T ss_pred ceEEEEECCCCeEEE
Confidence 469999999988874
Done!