Query 044591
Match_columns 241
No_of_seqs 116 out of 430
Neff 6.7
Searched_HMMs 13730
Date Mon Mar 25 08:02:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044591.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044591hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2gyc31 a.108.1.1 (3:2-48) Rib 19.1 66 0.0048 18.7 3.6 29 49-87 3-31 (47)
2 d2gu3a1 d.17.1.6 (A:99-161) Un 18.8 27 0.002 21.9 1.9 22 198-219 25-46 (63)
3 d1dl5a2 d.197.1.1 (A:214-317) 17.9 31 0.0023 22.8 2.1 16 202-219 49-64 (104)
4 d1ji1a2 b.71.1.1 (A:555-637) M 16.8 39 0.0029 21.4 2.5 9 207-215 2-10 (83)
5 d1mu2a2 e.8.1.2 (A:3-429) HIV- 14.8 51 0.0037 28.0 3.3 38 68-106 26-74 (427)
6 d1z8ma1 d.298.1.2 (A:1-88) Hyp 14.2 27 0.0019 23.1 1.0 31 71-102 24-54 (88)
7 d2bkfa1 d.15.2.2 (A:1-85) Next 11.7 47 0.0035 21.9 1.7 9 207-215 44-52 (85)
8 d1wmia1 d.298.1.2 (A:1-88) Hyp 10.4 40 0.0029 21.6 0.9 20 69-89 21-40 (88)
9 d1wzaa1 b.71.1.1 (A:437-515) B 10.1 53 0.0038 20.5 1.3 16 93-108 36-51 (79)
10 d2bmoa1 b.33.1.2 (A:3-152) Nit 10.0 1.4E+02 0.01 21.1 4.1 28 203-230 47-74 (150)
No 1
>d2gyc31 a.108.1.1 (3:2-48) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Escherichia coli [TaxId: 562]}
Probab=19.09 E-value=66 Score=18.71 Aligned_cols=29 Identities=14% Similarity=0.334 Sum_probs=22.8
Q ss_pred HHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHHHhcCCC
Q 044591 49 KTELLQVVQGINRGIFGVPSAKKSEIEALVELLESQNPT 87 (241)
Q Consensus 49 K~~LL~~ia~t~rG~~asp~~~r~~I~~li~~LE~~np~ 87 (241)
|.++|++|+.. .--+|-+||.++|..-.-
T Consensus 3 ke~Ileaia~M----------SVmdvveLi~amEEKFGV 31 (47)
T d2gyc31 3 KDQIIEAVAAM----------SVMDVVELISAMEEKFGV 31 (47)
T ss_dssp HHHHHHHHHHS----------CHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHh----------hHHHHHHHHHHHHHHhCc
Confidence 78999999865 135799999999987543
No 2
>d2gu3a1 d.17.1.6 (A:99-161) Uncharacterized protein YpmB {Bacillus subtilis [TaxId: 1423]}
Probab=18.83 E-value=27 Score=21.87 Aligned_cols=22 Identities=18% Similarity=0.148 Sum_probs=15.9
Q ss_pred cccCCCceEEEEEEecCCeEEE
Q 044591 198 LGIFNPDGWLEISYVDDTMRIG 219 (241)
Q Consensus 198 lp~~~p~g~l~~tYLDedlRI~ 219 (241)
|...+..-.||+||+|++=|.+
T Consensus 25 LG~~~~~pvWEVtY~~~~~~l~ 46 (63)
T d2gu3a1 25 LAREGNVLLWEVTYLDKEGQYS 46 (63)
T ss_dssp EEEETTEEEEEEEEECTTSCEE
T ss_pred eeeECCEEEEEEEEEeCCCCEE
Confidence 3444557788999999886654
No 3
>d1dl5a2 d.197.1.1 (A:214-317) Protein-L-isoaspartyl O-methyltransferase, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=17.94 E-value=31 Score=22.85 Aligned_cols=16 Identities=44% Similarity=0.887 Sum_probs=13.1
Q ss_pred CCceEEEEEEecCCeEEE
Q 044591 202 NPDGWLEISYVDDTMRIG 219 (241)
Q Consensus 202 ~p~g~l~~tYLDedlRI~ 219 (241)
+|.|. +-|||++|||-
T Consensus 49 gp~g~--vefl~~~mriy 64 (104)
T d1dl5a2 49 GPNGV--VEFLDDRMRIY 64 (104)
T ss_dssp CSSEE--EEEETTEEEEE
T ss_pred CCCce--eeecCCcEEEe
Confidence 57887 45899999995
No 4
>d1ji1a2 b.71.1.1 (A:555-637) Maltogenic amylase {Thermoactinomyces vulgaris, TVAI [TaxId: 2026]}
Probab=16.85 E-value=39 Score=21.35 Aligned_cols=9 Identities=33% Similarity=0.316 Sum_probs=6.8
Q ss_pred EEEEEecCC
Q 044591 207 LEISYVDDT 215 (241)
Q Consensus 207 l~~tYLDed 215 (241)
|.+.|.||+
T Consensus 2 f~~l~ad~~ 10 (83)
T d1ji1a2 2 FMTLITDDT 10 (83)
T ss_dssp EEEEEEETT
T ss_pred cEEEEecCC
Confidence 677888875
No 5
>d1mu2a2 e.8.1.2 (A:3-429) HIV-1 reverse transcriptase {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=14.80 E-value=51 Score=28.03 Aligned_cols=38 Identities=18% Similarity=0.490 Sum_probs=23.6
Q ss_pred hhhHHHHHHHHHHHHhcC-----CCCCCCCCCCCc------CcEEEEEEe
Q 044591 68 SAKKSEIEALVELLESQN-----PTPHPTANLDKV------GGTWKLVYS 106 (241)
Q Consensus 68 ~~~r~~I~~li~~LE~~n-----p~~~P~~~~~lL------~G~W~LvyT 106 (241)
.++.+++.++|++|+..+ |...|- ++|.+ .|+|+++--
T Consensus 26 ~ek~~al~~~i~ell~~G~I~~~ps~Sp~-~sPvf~V~KKd~gk~Rl~vD 74 (427)
T d1mu2a2 26 KEKIEALKEICEKMEKEGQLEEAPPTNPY-NTPTFAIKKKDKNKWRMLID 74 (427)
T ss_dssp HHHHHHHHHHHHHHHHHTSEEECCTTCCC-BBCEEECCCCC----CEEEC
T ss_pred HHHHHHHHHHHHHHHHCCeEEeCCCCCcC-cCceEEEEcCCCCCcEEEEc
Confidence 357889999999999986 333443 44433 499999854
No 6
>d1z8ma1 d.298.1.2 (A:1-88) Hypothetical protein HP0894 {Helicobacter pylori [TaxId: 210]}
Probab=14.18 E-value=27 Score=23.05 Aligned_cols=31 Identities=19% Similarity=0.386 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCcCcEEE
Q 044591 71 KSEIEALVELLESQNPTPHPTANLDKVGGTWK 102 (241)
Q Consensus 71 r~~I~~li~~LE~~np~~~P~~~~~lL~G~W~ 102 (241)
..++.+.|..|...+|-|.-. ....|.|+|.
T Consensus 24 ~~~~~~~i~~L~~~~pl~~~~-~dH~L~G~~~ 54 (88)
T d1z8ma1 24 DSVLNEVILTLRKKEPLDPQF-QDHALKGKWK 54 (88)
T ss_dssp HHHHHHHHHHHTTSCCCCGGG-CCEECSGGGT
T ss_pred HHHHHHHHHHHHcCCCCCccc-cCccccCccc
Confidence 467888888887766654322 3455666543
No 7
>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.72 E-value=47 Score=21.90 Aligned_cols=9 Identities=33% Similarity=0.944 Sum_probs=8.2
Q ss_pred EEEEEecCC
Q 044591 207 LEISYVDDT 215 (241)
Q Consensus 207 l~~tYLDed 215 (241)
+.+.|+|||
T Consensus 44 ~~lkY~Ddd 52 (85)
T d2bkfa1 44 IQIKYLDEE 52 (85)
T ss_dssp EEEEEECTT
T ss_pred ceEEEEcCC
Confidence 789999987
No 8
>d1wmia1 d.298.1.2 (A:1-88) Hypothetical protein PHS013 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=10.42 E-value=40 Score=21.64 Aligned_cols=20 Identities=25% Similarity=0.454 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHHHhcCCCCC
Q 044591 69 AKKSEIEALVELLESQNPTPH 89 (241)
Q Consensus 69 ~~r~~I~~li~~LE~~np~~~ 89 (241)
..+..|.+.++.|+. ||.+.
T Consensus 21 ~~~~~I~~~l~~L~~-~P~~~ 40 (88)
T d1wmia1 21 AHYRRFLEFRDILEY-EPVPR 40 (88)
T ss_dssp HHHHHHHHHHHHHTT-CSCCH
T ss_pred HHHHHHHHHHHHHHh-CcCcC
Confidence 356777777777654 55443
No 9
>d1wzaa1 b.71.1.1 (A:437-515) Bacterial alpha-Amylase {Halothermothrix orenii [TaxId: 31909]}
Probab=10.06 E-value=53 Score=20.47 Aligned_cols=16 Identities=19% Similarity=0.690 Sum_probs=12.8
Q ss_pred CCCCcCcEEEEEEeec
Q 044591 93 NLDKVGGTWKLVYSTI 108 (241)
Q Consensus 93 ~~~lL~G~W~LvyTt~ 108 (241)
.....+|.|.|+|.+.
T Consensus 36 kikvasgnwtllfnsg 51 (79)
T d1wzaa1 36 KIKVASGNWTLLFNSG 51 (79)
T ss_dssp EEEEESSCEEEEEESS
T ss_pred EEEEecCcEEEEEccC
Confidence 4455789999999985
No 10
>d2bmoa1 b.33.1.2 (A:3-152) Nitrobenzene dioxygenase alpha subunit, NBDO-alpha {Comamonas sp. JS765 [TaxId: 58226]}
Probab=10.05 E-value=1.4e+02 Score=21.11 Aligned_cols=28 Identities=14% Similarity=0.349 Sum_probs=23.5
Q ss_pred CceEEEEEEecCCeEEEeCCCCcEEEEE
Q 044591 203 PDGWLEISYVDDTMRIGRDDKGNIFILE 230 (241)
Q Consensus 203 p~g~l~~tYLDedlRI~Rg~~G~~FV~~ 230 (241)
+.-++.+.++++.+-|.|+.+|.+-+|.
T Consensus 47 ~Gd~~~~~i~~~~~vv~R~~dg~i~af~ 74 (150)
T d2bmoa1 47 PGDYVKAKMGVDEVIVSRQNDGSVRAFL 74 (150)
T ss_dssp TTEEEEEEETTEEEEEEECTTSCEEEEE
T ss_pred CcceeeeeecCceeEEEecCCCchhhhh
Confidence 3346778889999999999999998875
Done!