BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044593
(335 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|B Chain B, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|C Chain C, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|D Chain D, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|E Chain E, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|F Chain F, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|G Chain G, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|H Chain H, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|I Chain I, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|J Chain J, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|K Chain K, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|L Chain L, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3JTM|A Chain A, Structure Of Recombinant Formate Dehydrogenase From
Arabidopsis Thaliana
Length = 351
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 34 IAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVL 93
I +G G G+ L + LL H R +P + ++ A F DLN++ DV++
Sbjct: 167 IGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLP-KCDVIV 225
Query: 94 LSTSIL-STQSVLKSIPFQRLKRSTLFVD 121
++ + T+ + +LK+ L V+
Sbjct: 226 INMPLTEKTRGMFNKELIGKLKKGVLIVN 254
>pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
pdb|3NAQ|B Chain B, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
Length = 357
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 34 IAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVL 93
I +G G G+ L + LL H R +P + ++ A F DLN++ DV++
Sbjct: 173 IGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLP-KCDVIV 231
Query: 94 LSTSILS-TQSVLKSIPFQRLKRSTLFVD 121
++ + T+ + +LK+ L V+
Sbjct: 232 INMPLTEKTRGMFNKELIGKLKKGVLIVN 260
>pdb|2AMF|A Chain A, Crystal Structure Of 1-Pyrroline-5-Carboxylate Reductase
From Human Pathogen Streptococcus Pyogenes
pdb|2AMF|B Chain B, Crystal Structure Of 1-Pyrroline-5-Carboxylate Reductase
From Human Pathogen Streptococcus Pyogenes
pdb|2AMF|C Chain C, Crystal Structure Of 1-Pyrroline-5-Carboxylate Reductase
From Human Pathogen Streptococcus Pyogenes
pdb|2AMF|D Chain D, Crystal Structure Of 1-Pyrroline-5-Carboxylate Reductase
From Human Pathogen Streptococcus Pyogenes
pdb|2AMF|E Chain E, Crystal Structure Of 1-Pyrroline-5-Carboxylate Reductase
From Human Pathogen Streptococcus Pyogenes
Length = 259
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRS-DHSPAVRQQLNAPFFADLNDLCEL 87
S ++KI +IG G + K + H L++ S + S + +QL P+ DL +
Sbjct: 1 SNAMKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLID- 59
Query: 88 HPDVVLLSTSILSTQSVLKSIPFQR 112
D+V+L ++VLK + F++
Sbjct: 60 QVDLVILGIKPQLFETVLKPLHFKQ 84
>pdb|2I9P|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|B Chain B, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|C Chain C, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|D Chain D, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
Length = 319
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 69/156 (44%), Gaps = 13/156 (8%)
Query: 22 LHTQYVKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVH-----SRSDHSPAVRQQLNAP 76
L T+ + S+ + IG GN G +AK +H + L+++ + + A Q +++P
Sbjct: 13 LGTENLYFQSMPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSP 72
Query: 77 FFADLNDLCELHPDVVLLSTSI--LSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFL 134
AD+ + + + +L TSI + S I +++K+ +L +D ++
Sbjct: 73 --ADVAEKADRI--ITMLPTSINAIEAYSGANGI-LKKVKKGSLLIDSSTIDPAVSKELA 127
Query: 135 KYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVR 170
K + + + P+ G A S NL FM V
Sbjct: 128 KEVEKMGAVFMDAPVSGGVGAARSG-NLTFMVGGVE 162
>pdb|2AHR|A Chain A, Crystal Structures Of 1-Pyrroline-5-Carboxylate Reductase
From Human Pathogen Streptococcus Pyogenes
pdb|2AHR|B Chain B, Crystal Structures Of 1-Pyrroline-5-Carboxylate Reductase
From Human Pathogen Streptococcus Pyogenes
pdb|2AHR|C Chain C, Crystal Structures Of 1-Pyrroline-5-Carboxylate Reductase
From Human Pathogen Streptococcus Pyogenes
pdb|2AHR|D Chain D, Crystal Structures Of 1-Pyrroline-5-Carboxylate Reductase
From Human Pathogen Streptococcus Pyogenes
pdb|2AHR|E Chain E, Crystal Structures Of 1-Pyrroline-5-Carboxylate Reductase
From Human Pathogen Streptococcus Pyogenes
Length = 259
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRS-DHSPAVRQQLNAPFFADLNDLCEL 87
S + KI +IG G + K + H L++ S + S + +QL P+ DL +
Sbjct: 1 SNAXKIGIIGVGKXASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAXSHQDLID- 59
Query: 88 HPDVVLLSTSILSTQSVLKSIPFQR 112
D+V+L ++VLK + F++
Sbjct: 60 QVDLVILGIKPQLFETVLKPLHFKQ 84
>pdb|3I83|A Chain A, Crystal Structure Of 2-dehydropantoate 2-reductase From
Methylococcus Capsulatus
pdb|3I83|B Chain B, Crystal Structure Of 2-dehydropantoate 2-reductase From
Methylococcus Capsulatus
Length = 320
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH 65
SL I VIG G G F A+ H + V SRSD+
Sbjct: 2 SLNILVIGTGAIGSFYGALLAKTGHCVSVVSRSDY 36
>pdb|2GF2|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|B Chain B, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|C Chain C, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|D Chain D, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
Length = 296
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 64/146 (43%), Gaps = 13/146 (8%)
Query: 32 LKIAVIGFGNFGQFLAKAFARHHHTLLVH-----SRSDHSPAVRQQLNAPFFADLNDLCE 86
+ + IG GN G +AK +H + L+++ + + A Q +++P AD+ + +
Sbjct: 1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSP--ADVAEKAD 58
Query: 87 LHPDVVLLSTSI--LSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDIL 144
+ +L TSI + S I +++K+ +L +D ++ K + + +
Sbjct: 59 RI--ITMLPTSINAIEAYSGANGI-LKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVF 115
Query: 145 CTHPMFGPESAKSSWENLPFMYDKVR 170
P+ G A S NL FM V
Sbjct: 116 MDAPVSGGVGAARSG-NLTFMVGGVE 140
>pdb|2F1K|A Chain A, Crystal Structure Of Synechocystis Arogenate Dehydrogenase
pdb|2F1K|B Chain B, Crystal Structure Of Synechocystis Arogenate Dehydrogenase
pdb|2F1K|C Chain C, Crystal Structure Of Synechocystis Arogenate Dehydrogenase
pdb|2F1K|D Chain D, Crystal Structure Of Synechocystis Arogenate Dehydrogenase
Length = 279
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 81/197 (41%), Gaps = 31/197 (15%)
Query: 32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSR--SDHSPAVRQQLNAPFFADLNDLCELHP 89
+KI V+G G G LA R H L+ SR S AV +QL DL+ L
Sbjct: 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQT--A 58
Query: 90 DVVLLSTSI-LSTQSVLKSIPFQRLKRSTLFVDVLSVK----EFPRNLFLKYLPQDFDIL 144
++ L T I L ++ K IP L + + DV SVK E L+ + +
Sbjct: 59 KIIFLCTPIQLILPTLEKLIP--HLSPTAIVTDVASVKTAIAEPASQLWSGF-------I 109
Query: 145 CTHPMFG--PESAKSSWENL----PFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEM 198
HP G + + ENL P++ D E++ + L+ G ++
Sbjct: 110 GGHPXAGTAAQGIDGAEENLFVNAPYVLTPTEY-TDPEQLAXLRSVLEPL---GVKIYLC 165
Query: 199 SCFDHDKYAAGSQFVTH 215
+ DHD+ A +++H
Sbjct: 166 TPADHDQAVA---WISH 179
>pdb|3AOG|A Chain A, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|B Chain B, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|C Chain C, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|D Chain D, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|E Chain E, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|F Chain F, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|G Chain G, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|H Chain H, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|I Chain I, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|J Chain J, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|K Chain K, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|L Chain L, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
Length = 440
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 33 KIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAV 69
++A+ GFGN G A+AF H H V + DH+ V
Sbjct: 237 RVAIQGFGNVGNAAARAF--HDHGARVVAVQDHTGTV 271
>pdb|3AOE|A Chain A, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|B Chain B, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
Length = 424
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 33 KIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAV 69
++A+ GFGN G A+AF H H V + DH+ V
Sbjct: 221 RVAIQGFGNVGNAAARAF--HDHGARVVAVQDHTGTV 255
>pdb|1HV9|A Chain A, Structure Of E. Coli Glmu: Analysis Of Pyrophosphorylase
And Acetyltransferase Active Sites
pdb|1HV9|B Chain B, Structure Of E. Coli Glmu: Analysis Of Pyrophosphorylase
And Acetyltransferase Active Sites
pdb|2OI5|A Chain A, E. Coli Glmu- Complex With Udp-Glcnac And Acetyl-Coa
pdb|2OI5|B Chain B, E. Coli Glmu- Complex With Udp-Glcnac And Acetyl-Coa
pdb|2OI6|A Chain A, E. Coli Glmu- Complex With Udp-Glcnac, Coa And Glcn-1-Po4
pdb|2OI6|B Chain B, E. Coli Glmu- Complex With Udp-Glcnac, Coa And Glcn-1-Po4
pdb|2OI7|A Chain A, E. Coli Glmu- Complex With Udp-Glcnac, Desulpho-Coa And
Glcnac-1-Po4
pdb|2OI7|B Chain B, E. Coli Glmu- Complex With Udp-Glcnac, Desulpho-Coa And
Glcnac-1-Po4
Length = 456
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 39 FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSI 98
+G+ G L +A + ++ + + QQ APFFAD D+ L+ DV L+S
Sbjct: 55 YGHGGDLLKQALKDDNLNWVLQAEQLGTGHAMQQA-APFFADDEDILMLYGDVPLISVET 113
Query: 99 L 99
L
Sbjct: 114 L 114
>pdb|1FWY|A Chain A, Crystal Structure Of N-Acetylglucosamine 1-Phosphate
Uridyltransferase Bound To Udp-Glcnac
pdb|1FWY|B Chain B, Crystal Structure Of N-Acetylglucosamine 1-Phosphate
Uridyltransferase Bound To Udp-Glcnac
pdb|1FXJ|A Chain A, Crystal Structure Of N-Acetylglucosamine 1-Phosphate
Uridyltransferase
pdb|1FXJ|B Chain B, Crystal Structure Of N-Acetylglucosamine 1-Phosphate
Uridyltransferase
Length = 331
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 39 FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSI 98
+G+ G L +A + ++ + + QQ APFFAD D+ L+ DV L+S
Sbjct: 55 YGHGGDLLKQALKDDNLNWVLQAEQLGTGHAMQQA-APFFADDEDILMLYGDVPLISVET 113
Query: 99 L 99
L
Sbjct: 114 L 114
>pdb|3SP1|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase (Cyss) From
Borrelia Burgdorferi
pdb|3SP1|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase (Cyss) From
Borrelia Burgdorferi
Length = 501
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 160 ENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVE 197
EN+ + ++ RI E+ KR D+ D FAK+G +V+
Sbjct: 454 ENMKALIEERRIAKCEKNFKRADEIRDFFAKKGFVLVD 491
>pdb|2RIR|A Chain A, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
pdb|2RIR|B Chain B, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
pdb|2RIR|C Chain C, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
pdb|2RIR|D Chain D, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
pdb|2RIR|E Chain E, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
pdb|2RIR|F Chain F, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
pdb|2RIR|G Chain G, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
pdb|2RIR|H Chain H, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
Length = 300
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 23 HTQYVKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSD-HSPAVRQQLNAPFFADL 81
HT Y S ++AV+G G G +A+ FA + V +RS H + + PF D
Sbjct: 150 HTDYTIHGS-QVAVLGLGRTGXTIARTFAALGANVKVGARSSAHLARITEXGLVPFHTD- 207
Query: 82 NDLCELHPDVVLLSTSILS---TQSVLKS 107
+L E D+ + +I S Q+VL S
Sbjct: 208 -ELKEHVKDIDICINTIPSXILNQTVLSS 235
>pdb|3DTT|A Chain A, Crystal Structure Of A Putative F420 Dependent
Nadp-Reductase (Arth_0613) From Arthrobacter Sp. Fb24
At 1.70 A Resolution
pdb|3DTT|B Chain B, Crystal Structure Of A Putative F420 Dependent
Nadp-Reductase (Arth_0613) From Arthrobacter Sp. Fb24
At 1.70 A Resolution
Length = 245
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 27/61 (44%)
Query: 33 KIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVV 92
KIAV+G G G+ A A A H + + +R + R + +A + HP V
Sbjct: 21 KIAVLGTGTVGRTXAGALADLGHEVTIGTRDPKATLARAEPDAXGAPPFSQWLPEHPHVH 80
Query: 93 L 93
L
Sbjct: 81 L 81
>pdb|3K92|A Chain A, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
pdb|3K92|B Chain B, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
pdb|3K92|C Chain C, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
pdb|3K92|D Chain D, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
pdb|3K92|E Chain E, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
pdb|3K92|F Chain F, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
Length = 424
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 19 ESQLHTQYVKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFF 78
E + + +K + +I + GFGN G FLAK ++ S ++ L+ P+
Sbjct: 209 EEAVKKKGIKLQNARIIIQGFGNAGSFLAKFMHDAGAKVIGISDANGGLYNPDGLDIPYL 268
Query: 79 ADLND----LCELHPDVV 92
D D + L DV+
Sbjct: 269 LDKRDSFGMVTNLFTDVI 286
>pdb|1CM5|A Chain A, Crystal Structure Of C418a,C419a Mutant Of Pfl From E.Coli
pdb|1CM5|B Chain B, Crystal Structure Of C418a,C419a Mutant Of Pfl From E.Coli
Length = 759
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 173 NDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYA 207
N +E ++R+D F+D AK+ + + + HDKY+
Sbjct: 471 NYDEVMERMDHFMDWLAKQYITALNIIHYMHDKYS 505
>pdb|2PFL|A Chain A, Crystal Structure Of Pfl From E.Coli
pdb|2PFL|B Chain B, Crystal Structure Of Pfl From E.Coli
pdb|3PFL|A Chain A, Crystal Structure Of Pfl From E.coli In Complex With
Substrate Analogue Oxamate
pdb|3PFL|B Chain B, Crystal Structure Of Pfl From E.coli In Complex With
Substrate Analogue Oxamate
pdb|1H16|A Chain A, Pyruvate Formate-Lyase (E.Coli) In Complex With Pyruvate
And Coa
pdb|1H17|A Chain A, Pyruvate Formate-Lyase (E.Coli) In Complex With Coa And
The Substrate Analog Oxamate
pdb|1H18|A Chain A, Pyruvate Formate-Lyase (E.Coli) In Complex With Pyruvate
pdb|1H18|B Chain B, Pyruvate Formate-Lyase (E.Coli) In Complex With Pyruvate
pdb|1MZO|A Chain A, Crystal Structure Of Pyruvate Formate-Lyase With Pyruvate
pdb|1MZO|B Chain B, Crystal Structure Of Pyruvate Formate-Lyase With Pyruvate
Length = 759
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 173 NDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYA 207
N +E ++R+D F+D AK+ + + + HDKY+
Sbjct: 471 NYDEVMERMDHFMDWLAKQYITALNIIHYMHDKYS 505
>pdb|1FDJ|A Chain A, Fructose 1,6-Bisphosphate Aldolase From Rabbit Liver
pdb|1FDJ|B Chain B, Fructose 1,6-Bisphosphate Aldolase From Rabbit Liver
pdb|1FDJ|C Chain C, Fructose 1,6-Bisphosphate Aldolase From Rabbit Liver
pdb|1FDJ|D Chain D, Fructose 1,6-Bisphosphate Aldolase From Rabbit Liver
Length = 363
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 216 TMGRVLERFGVESSPINTKGYETLLDLVDNTKGDSFD--LYYGLFMYNKNSLEQLQR 270
TMG L+R VE+S N + + +L VDN+ S + + +Y K+S +L R
Sbjct: 38 TMGNRLQRIKVENSEENRRQFREILFTVDNSINQSIGGVILFHETLYQKDSQGKLFR 94
>pdb|1QHM|A Chain A, Escherichia Coli Pyruvate Formate Lyase Large Domain
pdb|1QHM|B Chain B, Escherichia Coli Pyruvate Formate Lyase Large Domain
Length = 624
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 173 NDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYA 207
N +E ++R+D F+D AK+ + + + HDKY+
Sbjct: 471 NYDEVMERMDHFMDWLAKQYITALNIIHYMHDKYS 505
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,247,754
Number of Sequences: 62578
Number of extensions: 358006
Number of successful extensions: 950
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 937
Number of HSP's gapped (non-prelim): 24
length of query: 335
length of database: 14,973,337
effective HSP length: 99
effective length of query: 236
effective length of database: 8,778,115
effective search space: 2071635140
effective search space used: 2071635140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)