BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044593
(335 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LMR3|TYRA2_ARATH Arogenate dehydrogenase 2, chloroplastic OS=Arabidopsis thaliana
GN=TYRAAT2 PE=1 SV=1
Length = 358
Score = 442 bits (1137), Expect = e-123, Method: Compositional matrix adjust.
Identities = 209/305 (68%), Positives = 255/305 (83%), Gaps = 1/305 (0%)
Query: 7 IRAIDAAQPFDYESQLHTQYVKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHS 66
IRAIDAAQ FDYE+QL ++Y KS++LKIAV+GFGNFGQFL+K RH H L+ HSRSD+S
Sbjct: 34 IRAIDAAQIFDYETQLKSEYRKSSALKIAVLGFGNFGQFLSKTLIRHGHDLITHSRSDYS 93
Query: 67 PAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVK 126
A + A FF + +DLCE HPDVVLL TSILST+SVL+S PFQRL+RSTLFVDVLSVK
Sbjct: 94 DAA-NSIGARFFDNPHDLCEQHPDVVLLCTSILSTESVLRSFPFQRLRRSTLFVDVLSVK 152
Query: 127 EFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLD 186
EFP+ LF+KYLP++FDILCTHPMFGPES K SW LPF+YDKVRIG+ R +R +KFL
Sbjct: 153 EFPKALFIKYLPKEFDILCTHPMFGPESGKHSWSGLPFVYDKVRIGDAASRQERCEKFLR 212
Query: 187 VFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERFGVESSPINTKGYETLLDLVDNT 246
+F EGC+MVEMSC HD YAAGSQFVTHTMGRVLE++GVESSPINTKGYETLLDLV+NT
Sbjct: 213 IFENEGCKMVEMSCEKHDYYAAGSQFVTHTMGRVLEKYGVESSPINTKGYETLLDLVENT 272
Query: 247 KGDSFDLYYGLFMYNKNSLEQLQRLEMAFESIKQQLFGQMFRVYRKELFGSAEEEEEEER 306
DSF+L+YGLFMYN N+LEQL+RL+MAFES+K++LFG++ + YRK++FG + ++
Sbjct: 273 SSDSFELFYGLFMYNPNALEQLERLDMAFESVKKELFGRLHQQYRKQMFGGEVQSPKKTE 332
Query: 307 VRLLS 311
+LL+
Sbjct: 333 QKLLN 337
>sp|Q944B6|TYRA1_ARATH Arogenate dehydrogenase 1, chloroplastic OS=Arabidopsis thaliana
GN=TYRAAT1 PE=1 SV=1
Length = 640
Score = 387 bits (993), Expect = e-107, Method: Compositional matrix adjust.
Identities = 179/293 (61%), Positives = 231/293 (78%), Gaps = 1/293 (0%)
Query: 6 VIRAIDAAQPFDYESQLHTQYVKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH 65
++R+ D ++Y SQ+ + LKI ++GFGNFGQFL K + HT+L +SRSD+
Sbjct: 339 MMRSEDVVVKYEYNSQVSGSVNDGSRLKIGIVGFGNFGQFLGKTMVKQGHTVLAYSRSDY 398
Query: 66 SPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSV 125
+ +L +F+DL+DL E HP+V++L TSILST+ VL+S+PFQRLKRSTLFVDVLSV
Sbjct: 399 TDEA-AKLGVSYFSDLDDLFEEHPEVIILCTSILSTEKVLESLPFQRLKRSTLFVDVLSV 457
Query: 126 KEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFL 185
KEFPRNLFL+ LPQDFDILCTHPMFGPES K+ W NL F++DKVRIG D+ R R + FL
Sbjct: 458 KEFPRNLFLQTLPQDFDILCTHPMFGPESGKNGWNNLAFVFDKVRIGMDDRRKSRCNSFL 517
Query: 186 DVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERFGVESSPINTKGYETLLDLVDN 245
D+FA+EGCRMVEMSC +HD +AAGSQF+THT+GR+LE+ +ES+PI+TKGYETLL LV+N
Sbjct: 518 DIFAREGCRMVEMSCAEHDWHAAGSQFITHTVGRLLEKLSLESTPIDTKGYETLLKLVEN 577
Query: 246 TKGDSFDLYYGLFMYNKNSLEQLQRLEMAFESIKQQLFGQMFRVYRKELFGSA 298
T GDSFDLYYGLF+YN N++EQL+R +AFES+K QLFG++ + EL S+
Sbjct: 578 TAGDSFDLYYGLFLYNPNAMEQLERFHVAFESLKTQLFGRLHSQHSHELAKSS 630
Score = 354 bits (909), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 173/304 (56%), Positives = 223/304 (73%), Gaps = 15/304 (4%)
Query: 32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDV 91
L+IA+IGFGN+GQFLA+ H L HSRSDHS A R+ L +F DL+DLCE HPDV
Sbjct: 53 LRIAIIGFGNYGQFLAETLISQGHILFAHSRSDHSSAARR-LGVSYFTDLHDLCERHPDV 111
Query: 92 VLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFG 151
VLL TSILS +++LK++PFQRL+R+TLFVDVLSVKEF + L L+YLP+DFDILCTHPMFG
Sbjct: 112 VLLCTSILSIENILKTLPFQRLRRNTLFVDVLSVKEFAKTLLLQYLPEDFDILCTHPMFG 171
Query: 152 PESAKSS--WENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAG 209
P+S S+ W L F+YDKVRIG + R+ R + FL++F +EGC MVEMS DHDK+AA
Sbjct: 172 PQSVSSNHGWRGLRFVYDKVRIGEERLRVSRCESFLEIFVREGCEMVEMSVTDHDKFAAE 231
Query: 210 SQFVTHTMGRVLERFGVESSPINTKGYETLLDLVDNTKGDSFDLYYGLFMYNKNSLEQLQ 269
SQF+THT+GR+L + S+PINTKGYE LLDL +N GDSFDLYYGLF+YN NSLE L+
Sbjct: 232 SQFITHTLGRLLGMLKLISTPINTKGYEALLDLAENICGDSFDLYYGLFVYNNNSLEVLE 291
Query: 270 RLEMAFESIKQQLFGQMFRVYRKELFGSAEEEEEEERVRLLSATKETQNGAPVEQASVDS 329
R+++AFE+++++LF ++ V RK+ F E E ++V + E AS+D
Sbjct: 292 RIDLAFEALRKELFSRLHGVVRKQSF-----EGEAKKVHVFPNCGEN-------DASLDM 339
Query: 330 ERLE 333
R E
Sbjct: 340 MRSE 343
>sp|Q58029|Y612_METJA Probable arogenate/prephenate dehydrogenase OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0612 PE=4 SV=1
Length = 446
Score = 75.1 bits (183), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 118/251 (47%), Gaps = 30/251 (11%)
Query: 27 VKSTSLKIAVIGFGN-FGQFLAKAFARHHHTLLVHSRS-DHSPAVRQQLNAPFFADLNDL 84
+K+T+L I++IG + G++ A+ ++V R + V ++L F + N
Sbjct: 1 MKNTNLTISIIGGTDGLGKWFARYLKNKGFNVIVTGRDIEKGKNVEKELGVEF-TNNNIE 59
Query: 85 CELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDIL 144
D+V+++ I T+ V+K + ++ L +D+ S+KE P +++ + ++
Sbjct: 60 AAKKGDIVIVAVPINVTERVIKEVA-PHVREGCLLMDITSIKEIPSKAMEEHVKEGVTVI 118
Query: 145 CTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVF---AKEGCRMVEMSCF 201
THPMFGP + P + +V I E+ K + F V+ KEG +++ +
Sbjct: 119 PTHPMFGPST--------PSLLRQVVILTPSEKHKNTEWFNKVYNFLKKEGAKVIVIPPE 170
Query: 202 DHDKYAAGSQFVTH----TMGRVLERFGVE-------SSPINTKGYETLLDLVDNTKGDS 250
HD+ Q +TH ++G L+ V+ +SPI YE ++ ++ G +
Sbjct: 171 KHDRIMGIVQGLTHFAFISLGATLKELNVDIKESRKFASPI----YELMISIIGRIIGQN 226
Query: 251 FDLYYGLFMYN 261
LY + M+N
Sbjct: 227 PYLYADIQMFN 237
>sp|O60078|TYR1_SCHPO Probable prephenate dehydrogenase [NADP(+)] OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=tyr1 PE=2 SV=1
Length = 431
Score = 61.2 bits (147), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 122/287 (42%), Gaps = 31/287 (10%)
Query: 31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELH-- 88
+ ++ +IGFG+ G+ A+ ++ + V R ++ +++ + L D ++
Sbjct: 4 TFQVGIIGFGDMGRLYAEYISKAGWRVNVCDRPENYESIQATYGNGGYTVLKDGFQVSRT 63
Query: 89 PDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHP 148
D +L S V+ ++ K + S K N F KYLP+D DI+ H
Sbjct: 64 SDYILYSVEAEHIDKVV-ALYGPATKVGAIVGGQTSCKAPEMNAFEKYLPEDVDIISCHS 122
Query: 149 MFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAA 208
M GP+ S P + +R +E + V++ L F +V +S +HD+ A
Sbjct: 123 MHGPKVNPKS---QPLVI--IRHRASDEHFEIVNEILSCFKSS---VVYLSAKEHDRITA 174
Query: 209 GSQFVTH----TMGRVLERFGVESSPIN--TKGYETL-LDLVDNTKGDSFDLYYGLFMYN 261
+Q VTH TMG IN G E + ++L + +Y GL + N
Sbjct: 175 DTQAVTHAAFLTMGLAWHANNQYPWEINRWCGGIENIKMNLSMRIYSSKWHVYAGLAILN 234
Query: 262 KNSLEQLQRLEMAFESIKQQLFGQMFRVYRKELFGSAEEEEEEERVR 308
+ Q+Q+ + S +LF +L S + +E E+R+R
Sbjct: 235 PEAQRQIQQ----YASSVTELF---------KLAISGKAKEYEDRIR 268
>sp|P07023|TYRA_ECOLI T-protein OS=Escherichia coli (strain K12) GN=tyrA PE=1 SV=1
Length = 373
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 78/307 (25%), Positives = 119/307 (38%), Gaps = 50/307 (16%)
Query: 31 SLKIAVI--GFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELH 88
SL+ VI G G G+ K + + + + D A A AD
Sbjct: 97 SLRPVVIVGGGGQMGRLFEKMLTLSGYQVRILEQHDWDRA------ADIVADAG------ 144
Query: 89 PDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHP 148
+V++S I T+ V+ +P L + + VD+ SVK P L + D +L HP
Sbjct: 145 --MVIVSVPIHVTEQVIGKLP--PLPKDCILVDLASVKNGPLQAML--VAHDGPVLGLHP 198
Query: 149 MFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAA 208
MFGP+S + +V + D + + FL+ G R+ +S +HD+ A
Sbjct: 199 MFGPDSGS--------LAKQVVVWCDGRKPEAYQWFLEQIQVWGARLHRISAVEHDQNMA 250
Query: 209 GSQ----FVTHTMGR-------VLERFGVESSPINTKGYETLLDLVDNTKGDSFDLYYGL 257
Q F T G LE+ SSPI Y L +V LY +
Sbjct: 251 FIQALRHFATFAYGLHLAEENVQLEQLLALSSPI----YRLELAMVGRLFAQDPQLYADI 306
Query: 258 FMYNKNSLEQLQRLEMAF-ESIK------QQLFGQMFRVYRKELFGSAEEEEEEERVRLL 310
M ++ +L ++R F E+I+ +Q F FR A+ + E RV L
Sbjct: 307 IMSSERNLALIKRYYKRFGEAIELLEQGDKQAFIDSFRKVEHWFGDYAQRFQSESRVLLR 366
Query: 311 SATKETQ 317
A Q
Sbjct: 367 QANDNRQ 373
>sp|P20049|TYR1_YEAST Prephenate dehydrogenase [NADP(+)] OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TYR1 PE=1 SV=2
Length = 452
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/273 (21%), Positives = 113/273 (41%), Gaps = 25/273 (9%)
Query: 34 IAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLND--LCELHPDV 91
I +IG G+ G A F ++ R ++ ++++ + F + + L D
Sbjct: 16 IGIIGLGDMGLLYANKFTDAGWGVICCDREEYYDELKEKYASAKFELVKNGHLVSRQSDY 75
Query: 92 VLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFG 151
++ S + ++ + K T+ S K F KYLP+D DI+ H + G
Sbjct: 76 IIYSVEASNISKIVATYGPSS-KVGTIVGGQTSCKLPEIEAFEKYLPKDCDIITVHSLHG 134
Query: 152 PESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLD-VFAKEGCRMVEMSCFDHDKYAAGS 210
P K + E P + I N + +F++ V A + V ++ +HDK A +
Sbjct: 135 P---KVNTEGQPLV-----IINHRSQYPESFEFVNSVMACLKSKQVYLTYEEHDKITADT 186
Query: 211 QFVTH----TMGRVLERFGVESSPINT-KGYETLLDLVDNTK----GDSFDLYYGLFMYN 261
Q VTH +MG + + + K Y L ++ N + + +Y GL + N
Sbjct: 187 QAVTHAAFLSMGSAWAKIKIYPWTLGVNKWYGGLENVKVNISLRIYSNKWHVYAGLAITN 246
Query: 262 KNSLEQLQRLEMAFESIKQQLFGQMFRVYRKEL 294
++ +Q+ + + + +LF M +EL
Sbjct: 247 PSAHQQI----LQYATSATELFSLMIDNKEQEL 275
>sp|Q02287|TYRA_ENTAG T-protein OS=Enterobacter agglomerans GN=tyrA PE=4 SV=1
Length = 373
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 79/191 (41%), Gaps = 27/191 (14%)
Query: 91 VVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMF 150
+V++S I T+ V+ +P L + VD+ SVK P L + +L HPMF
Sbjct: 145 MVIISVPIHLTEQVIAQLP--PLPEDCILVDLASVKNRPLQAMLA--AHNGPVLGLHPMF 200
Query: 151 GPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGS 210
GP+S + +V + D + + FL+ G R+ +S +HD+ A
Sbjct: 201 GPDSGS--------LAKQVVVWCDGRQPEAYQWFLEQIQVWGARLHRISAVEHDQNMAFI 252
Query: 211 Q----FVTHTMGRVLERFGVE-------SSPINTKGYETLLDLVDNTKGDSFDLYYGLFM 259
Q F T G L V SSPI Y L +V LY + M
Sbjct: 253 QALRHFATFAYGLHLAEENVNLDQLLALSSPI----YRLELAMVGRLFAQDPQLYADIIM 308
Query: 260 YNKNSLEQLQR 270
++++L ++R
Sbjct: 309 SSESNLALIKR 319
>sp|Q2L0B2|GPDA_BORA1 Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Bordetella avium
(strain 197N) GN=gpsA PE=3 SV=1
Length = 354
Score = 40.4 bits (93), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 63/269 (23%), Positives = 104/269 (38%), Gaps = 57/269 (21%)
Query: 31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHS-------------PAVRQQLNAPF 77
SL+IAV+G G++G LA A +R H TLL + + P V F
Sbjct: 8 SLRIAVLGAGSWGTALAAAASRRHPTLLWARGAAQAASLSIERENTRYLPGVALPAALRF 67
Query: 78 FADLN---DLCELHPD--VVLLSTSILSTQSVLKS----IPFQRLKRSTLFVDVLSVKEF 128
ADL+ D PD +++L + S++ +P + + R+ + V + K F
Sbjct: 68 SADLDQALDFLGTDPDQALIILGVPVAGMSSIMAELALRLPLRGMIRTPI---VWTCKGF 124
Query: 129 -------PRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRV 181
P + + + + C + GP A+ + LP + + + ER+ R
Sbjct: 125 ETDSARLPHEIVHASVGELAGMAC-GVLSGPSFAREVAQGLPV---ALTVASRHERVIRA 180
Query: 182 ------DKFLDVFAKEGCRMVEM----------SCFDHDKYAAGSQFVTHTMGRVLE--- 222
+ V+A + VEM +C D A G+ + R L
Sbjct: 181 VTAALHGAAVRVYASQDVPGVEMGGALKNVIAVACGISDGLALGTNARAALITRGLAEMT 240
Query: 223 RFGVE-SSPINT-KGYETLLDLVDNTKGD 249
RFG+ + +T G L DLV G+
Sbjct: 241 RFGLALGARADTFAGLTGLGDLVLTATGE 269
>sp|Q6G0U8|GPDA_BARQU Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Bartonella quintana
(strain Toulouse) GN=gpsA PE=3 SV=1
Length = 340
Score = 39.3 bits (90), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 31 SLKIAVIGFGNFGQFLAKAFARH-HHTLLVHSRSDHSPAVR-QQLNAPFFADLNDLCELH 88
++ + VIG G++G LA AFAR+ HH LL H ++ + N F D+ L
Sbjct: 3 AVSMTVIGAGSYGTALAIAFARNGHHVLLWGYNPQHVRELQIHRCNQAFLPDVQFPDNLS 62
Query: 89 PDVVLLSTSILSTQSVLKSIP 109
P+ L T+I +++++L ++P
Sbjct: 63 PEAS-LETAITASRNILIAVP 82
>sp|Q8D2K8|HEM1_WIGBR Glutamyl-tRNA reductase OS=Wigglesworthia glossinidia brevipalpis
GN=hemA PE=3 SV=1
Length = 420
Score = 37.7 bits (86), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 75/168 (44%), Gaps = 29/168 (17%)
Query: 15 PFDYESQLHTQYVKSTSLKIAVIGFGNFGQFLAKAFARHH-HTLLVHSRS-DHSPAVRQQ 72
P+ L ++ T +K+ +IG G + +AK ++ L + +R+ DH+ + +
Sbjct: 167 PYIICVLLKKIFISFTEIKVMLIGSGTINELIAKQLFKYKIKDLFISNRTIDHAKNLAIK 226
Query: 73 LNA------PFFADLNDLCELHPDVVLLST---SILSTQSVLKSIPFQRLKRSTLFVDVL 123
+N F +LN + V++ ST ++ T ++KSI + + +F+D+
Sbjct: 227 VNGCVVEFNEIFKNLNKM-----QVIITSTYSRKLIITYKIIKSIIEKNKNKKIIFIDI- 280
Query: 124 SVKEFPRNLFLK---------YLPQDFDILCTHPMFGPESAKSSWENL 162
PRN+ K Y +D L T+ + ++A + EN+
Sbjct: 281 ---SIPRNIDKKIKKITGVHLYTLEDLKDLITNNLEKRKNAATLAENI 325
>sp|Q5JEZ2|GYAR_PYRKO Glyoxylate reductase OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=gyaR PE=3 SV=1
Length = 333
Score = 37.7 bits (86), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 2/108 (1%)
Query: 34 IAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVL 93
I ++GFG GQ +A+ +L +SRS P ++L A F + L DL VVL
Sbjct: 153 IGIVGFGRIGQAVARRARGFGMRILYYSRS-RKPEAEKELGAEFRS-LEDLLRESDFVVL 210
Query: 94 LSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDF 141
TQ ++ + +K++ + V++ K +K L + +
Sbjct: 211 AVPLTKETQYMINEERLRLMKKTAILVNIARGKVVDTKALMKALKEGW 258
>sp|Q47VY6|GPDA_COLP3 Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Colwellia
psychrerythraea (strain 34H / ATCC BAA-681) GN=gpsA PE=3
SV=1
Length = 334
Score = 37.4 bits (85), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 15/100 (15%)
Query: 29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ--LNAPFFADLNDLCE 86
S + KI V+G G++G LA AR+ H L+ R D+ A +Q N + AD C
Sbjct: 2 SLAAKITVLGAGSYGTALAICLARNGHKTLLWGRDDNHVAAMEQDRENNKYLAD----CP 57
Query: 87 LHPDVVL---LSTSILSTQSVLKSIPFQRLKRSTLFVDVL 123
++ L L ++ ++ ++L +P S F D+L
Sbjct: 58 FPENLALEADLEKAVQASDNLLVVVP------SHAFADML 91
>sp|C5BL79|GPDA_TERTT Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Teredinibacter
turnerae (strain ATCC 39867 / T7901) GN=gpsA PE=3 SV=1
Length = 340
Score = 37.0 bits (84), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 63/148 (42%), Gaps = 20/148 (13%)
Query: 29 STSLKIAVIGFGNFGQFLAKAFARH-HHTLLVHSRSDHSPAVRQQLNAPFFA---DLNDL 84
+ SL++AV+G G+FG +A A + HHT L D + + + P + LND
Sbjct: 2 TNSLRVAVLGGGSFGTAIANIIAANGHHTYLWMRDEDRAEKCQFERENPEYLPGYKLNDN 61
Query: 85 CELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDIL 144
E+ D+V S+ V S+P Q S +E R + ++P++ +L
Sbjct: 62 LEITSDLV---ASVADADVVTLSVPSQ------------SFREVARRV-APHIPENAIVL 105
Query: 145 CTHPMFGPESAKSSWENLPFMYDKVRIG 172
T ES + L VRIG
Sbjct: 106 STTKGIEGESFLLMSQILEQELGNVRIG 133
>sp|O66553|P5CR_AQUAE Pyrroline-5-carboxylate reductase OS=Aquifex aeolicus (strain VF5)
GN=proC PE=3 SV=1
Length = 265
Score = 37.0 bits (84), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 31 SLKIAVIGFGNFGQFLAKAFARH--HHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELH 88
++++ ++GFGN GQ A F++ ++V + + ++ F +D+ L + +
Sbjct: 7 TMRVGIVGFGNMGQAFALCFSKKLGKENIIVTDKVQEKRNLATEMGIAFASDVKFLAD-N 65
Query: 89 PDVVLLSTSILSTQSVLKSI 108
DVVL++ +Q VL+ +
Sbjct: 66 SDVVLVAVKPKDSQEVLQKL 85
>sp|Q9S7E4|FDH_ARATH Formate dehydrogenase, mitochondrial OS=Arabidopsis thaliana
GN=FDH1 PE=1 SV=1
Length = 384
Score = 37.0 bits (84), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 34 IAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVL 93
I +G G G+ L + LL H R +P + ++ A F DLN++ DV++
Sbjct: 200 IGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLP-KCDVIV 258
Query: 94 LSTSIL-STQSVLKSIPFQRLKRSTLFVD 121
++ + T+ + +LK+ L V+
Sbjct: 259 INMPLTEKTRGMFNKELIGKLKKGVLIVN 287
>sp|P21336|Y7SR_METFE Uncharacterized 28.5 kDa protein in 7S RNA 5'region
OS=Methanothermus fervidus PE=4 SV=1
Length = 251
Score = 36.6 bits (83), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 56/116 (48%), Gaps = 5/116 (4%)
Query: 32 LKIAVIGFGNFGQFLAKAFA-RHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPD 90
++I IGFG L++ F + V RS+ + + ++L + D DL + + D
Sbjct: 1 MRIGFIGFGEVSSTLSQFFKDKVEVQTCVKGRSEKTKKIAKKLGVKIYKDYKDLVK-NSD 59
Query: 91 VVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCT 146
+V+ + + S V K + + + ++VDV +V ++ LKY+ ++ + C
Sbjct: 60 IVISAVTPFSALDVAK--KYGKYVKG-IYVDVNNVSPLTKHKILKYIDEEKFVDCA 112
>sp|Q93ML3|REX_LACSS Redox-sensing transcriptional repressor rex OS=Lactobacillus sakei
subsp. sakei (strain 23K) GN=rex PE=3 SV=1
Length = 208
Score = 36.2 bits (82), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 16/127 (12%)
Query: 21 QLHTQYVKSTSL-KIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPA-VRQQLNA-PF 77
Q+ + +K+ L K+AVIG GN G+ L + R + L + D +PA V Q LN P
Sbjct: 74 QIFSAVLKADILTKMAVIGVGNLGRALIENNFRRNDNLQITCAFDTNPALVGQTLNGVPI 133
Query: 78 FADLNDLCELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEF-------PR 130
+A ++ L + P + I + S + S QR + + S+ F PR
Sbjct: 134 YA-IDQLATVIP-----AAGITTAISTVPSEASQRSAEQLIDAGITSILNFAPTRLQVPR 187
Query: 131 NLFLKYL 137
++ ++YL
Sbjct: 188 HINVRYL 194
>sp|Q9ZRI8|FDH_HORVU Formate dehydrogenase, mitochondrial OS=Hordeum vulgare PE=2 SV=1
Length = 377
Score = 35.4 bits (80), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 34 IAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVL 93
+ +G G +G+ L + + LL H R +P + +++ A F DL+ + DVV+
Sbjct: 193 VGTVGAGRYGRLLLQRLKPFNCNLLYHDRLQINPELEKEIGAKFEEDLDAMLP-KCDVVV 251
Query: 94 LSTSIL-STQSVLKSIPFQRLKRSTLFVD 121
++T + T+ + ++K+ + V+
Sbjct: 252 INTPLTEKTRGMFNKEKIAKMKKGVIIVN 280
>sp|Q7NYZ3|GPDA_CHRVO Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Chromobacterium
violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 /
NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=gpsA PE=3 SV=1
Length = 334
Score = 35.4 bits (80), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 32 LKIAVIGFGNFGQFLAKAFARHHHTLL 58
+K+A++G G +G LA AFARHH L
Sbjct: 1 MKLAILGAGAWGSALAIAFARHHQVTL 27
>sp|Q9V0N0|PANE_PYRAB Putative 2-dehydropantoate 2-reductase OS=Pyrococcus abyssi (strain
GE5 / Orsay) GN=apbA PE=3 SV=1
Length = 300
Score = 35.0 bits (79), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ-LNAPFFADLNDLCEL--- 87
+KI ++G G G A +L+ R H A+ ++ L DLN E
Sbjct: 1 MKIYILGAGAIGSLFGGLLANAGEDVLLIGRDPHVSAINEKGLKIVGIKDLNVKVEATTR 60
Query: 88 ----HPDVVLLSTSILSTQSVLKS 107
PD+++L+T ST LKS
Sbjct: 61 VPEEKPDLIVLATKSYSTIEALKS 84
>sp|A5FMP6|KMO_FLAJ1 Kynurenine 3-monooxygenase OS=Flavobacterium johnsoniae (strain
ATCC 17061 / DSM 2064 / UW101) GN=kmo PE=3 SV=1
Length = 446
Score = 35.0 bits (79), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQ 71
TSLKIAV+G G G LA + HT+ V+ D SP +R+
Sbjct: 3 TSLKIAVVGSGLVGSLLAIYLKKAGHTVHVY---DRSPDIRK 41
>sp|B4SSF9|GPDA_STRM5 Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Stenotrophomonas
maltophilia (strain R551-3) GN=gpsA PE=3 SV=1
Length = 341
Score = 35.0 bits (79), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 27 VKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSR 62
+ +T+ KIAV+G G++G LA ARH H ++ R
Sbjct: 1 MSTTADKIAVLGAGSWGTALASLLARHGHPTVLWGR 36
>sp|B2FHD8|GPDA_STRMK Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Stenotrophomonas
maltophilia (strain K279a) GN=gpsA PE=3 SV=1
Length = 341
Score = 35.0 bits (79), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 27 VKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSR 62
+ +T+ KIAV+G G++G LA ARH H ++ R
Sbjct: 1 MSTTADKIAVLGAGSWGTALASLLARHGHPTVLWGR 36
>sp|B3PHG2|GPDA_CELJU Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Cellvibrio
japonicus (strain Ueda107) GN=gpsA PE=3 SV=1
Length = 340
Score = 34.7 bits (78), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQ--QLNAPFFADLNDLCE 86
+T LK+AV+G G+FG +A A + H + + RS Q + N +
Sbjct: 2 ATKLKVAVLGGGSFGTAIANIIACNQHQVYLWMRSGEQATASQLARENTRYLPGY----R 57
Query: 87 LHPDVVL---LSTSILSTQSVLKSIP 109
LH D+++ L+ ++ Q V SIP
Sbjct: 58 LHDDLMISADLAQAVRGAQLVFVSIP 83
>sp|A9IM16|GPDA_BART1 Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Bartonella
tribocorum (strain CIP 105476 / IBS 506) GN=gpsA PE=3
SV=1
Length = 334
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 47/85 (55%), Gaps = 11/85 (12%)
Query: 31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRS-DHSPAVRQQ-LNAPFFADLNDLCELH 88
++ + +IG G+FG LA A AR+ H++L+ + H +++Q N + D+
Sbjct: 3 TIAMTIIGAGSFGTALAIALARNGHSVLLWGYNPQHIKKLQEQRCNQVYLPDIR-----F 57
Query: 89 PDVVL----LSTSILSTQSVLKSIP 109
P+ +L L T+I ++ ++L ++P
Sbjct: 58 PENLLLEASLETAITASDNILIAVP 82
>sp|B6YWH0|GYAR_THEON Glyoxylate reductase OS=Thermococcus onnurineus (strain NA1)
GN=gyaR PE=3 SV=1
Length = 334
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 2/108 (1%)
Query: 34 IAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVL 93
I ++GFG GQ +A+ +L +SR+ P V ++L A F L++L + VVL
Sbjct: 153 IGIVGFGRIGQAIARRAKGFGMRILYNSRT-RKPEVEKELGAEFMP-LDELLKESDFVVL 210
Query: 94 LSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDF 141
+ T ++ + +K + + V++ K +K L + +
Sbjct: 211 VVPLTKETYHMINEERLKLMKPTAILVNIARGKVVDTEALVKALREGW 258
>sp|Q4L6H9|GPDA_STAHJ Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Staphylococcus
haemolyticus (strain JCSC1435) GN=gpsA PE=3 SV=1
Length = 332
Score = 33.5 bits (75), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 33 KIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHS 66
KI V G G+FG LA A + HT+L+ +++ S
Sbjct: 3 KITVFGMGSFGTALANVLAENGHTVLMWGKNEDS 36
>sp|Q07511|FDH_SOLTU Formate dehydrogenase, mitochondrial OS=Solanum tuberosum GN=FDH1
PE=1 SV=2
Length = 381
Score = 32.7 bits (73), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 34 IAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVL 93
+ +G G G+ L + + LL H R + Q+ A F DL+ + D+V+
Sbjct: 197 VGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDSELENQIGAKFEEDLDKMLS-KCDIVV 255
Query: 94 LSTSIL-STQSVLKSIPFQRLKRSTLFVD 121
++T + T+ + +LK+ L V+
Sbjct: 256 INTPLTEKTKGMFDKERIAKLKKGVLIVN 284
>sp|O08455|YHAN_BACSU Uncharacterized protein YhaN OS=Bacillus subtilis (strain 168)
GN=yhaN PE=2 SV=1
Length = 963
Score = 32.3 bits (72), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%)
Query: 144 LCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDH 203
L T F + LPF D + D+ER+KRV L ++ G +++ +C +H
Sbjct: 889 LYTAIRFALAVTRQGESKLPFQLDDSFVHFDQERLKRVLHVLYDLSEGGRQILYFTCHEH 948
Query: 204 DKYAAGSQFVTH 215
K A S + H
Sbjct: 949 VKDAFHSSQIIH 960
>sp|Q9SXP2|FDH1_ORYSJ Formate dehydrogenase 1, mitochondrial OS=Oryza sativa subsp.
japonica GN=Os06g0486800 PE=1 SV=2
Length = 376
Score = 32.0 bits (71), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 34 IAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVL 93
+ +G G G+ L + + LL H R P + +++ A + DL+ + DV++
Sbjct: 192 VGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKIDPELEKEIGAKYEEDLDAMLP-KCDVIV 250
Query: 94 LSTSIL-STQSVLKSIPFQRLKRSTLFVD 121
++T + T+ + ++K+ + V+
Sbjct: 251 INTPLTEKTRGMFNKERIAKMKKGVIIVN 279
>sp|Q49XG5|TYRA_STAS1 Prephenate dehydrogenase OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=tyrA
PE=4 SV=1
Length = 363
Score = 31.6 bits (70), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 50/123 (40%), Gaps = 5/123 (4%)
Query: 33 KIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFF----ADLNDLCELH 88
+I +G G G LA +H + + + + + + L+ D E +
Sbjct: 3 QILFVGLGLIGGSLASNLRYYHDDIEITAFDADTSQLDKALSIGIIDYQSTDYKTSVE-N 61
Query: 89 PDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHP 148
D+++ +T + T L+ +P +LK+ + D S K + L D ++ HP
Sbjct: 62 ADIIIYATPVQQTVKYLQDLPNYQLKKHVIITDTGSTKSTIQQYEQFLLNHDIHLVGGHP 121
Query: 149 MFG 151
M G
Sbjct: 122 MAG 124
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119,060,069
Number of Sequences: 539616
Number of extensions: 4858661
Number of successful extensions: 16559
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 16523
Number of HSP's gapped (non-prelim): 55
length of query: 335
length of database: 191,569,459
effective HSP length: 118
effective length of query: 217
effective length of database: 127,894,771
effective search space: 27753165307
effective search space used: 27753165307
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)