Query 044593
Match_columns 335
No_of_seqs 317 out of 2870
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 04:50:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044593.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044593hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02256 arogenate dehydrogena 100.0 3.8E-56 8.3E-61 418.0 31.3 294 4-298 9-302 (304)
2 PLN02712 arogenate dehydrogena 100.0 2.1E-49 4.5E-54 406.1 30.0 293 6-299 344-636 (667)
3 COG0287 TyrA Prephenate dehydr 100.0 2.9E-48 6.4E-53 359.0 25.5 258 30-298 2-272 (279)
4 PLN02712 arogenate dehydrogena 100.0 1.8E-45 3.9E-50 377.0 32.2 269 30-299 51-319 (667)
5 PRK07417 arogenate dehydrogena 100.0 9.3E-45 2E-49 338.2 23.1 253 32-298 1-270 (279)
6 PF02153 PDH: Prephenate dehyd 100.0 4.7E-45 1E-49 336.4 19.6 239 46-294 1-256 (258)
7 PRK08818 prephenate dehydrogen 100.0 1.4E-43 2.9E-48 339.3 25.2 241 30-298 3-265 (370)
8 PRK11199 tyrA bifunctional cho 100.0 2.2E-43 4.7E-48 341.1 24.7 247 30-303 97-351 (374)
9 KOG2380 Prephenate dehydrogena 100.0 2.7E-43 5.9E-48 322.3 21.5 314 2-322 23-336 (480)
10 PRK08507 prephenate dehydrogen 100.0 1.1E-42 2.3E-47 323.6 25.3 252 32-298 1-268 (275)
11 PRK08655 prephenate dehydrogen 100.0 1.8E-42 3.9E-47 340.7 27.5 259 32-299 1-268 (437)
12 PRK07502 cyclohexadienyl dehyd 100.0 1.3E-42 2.9E-47 327.9 24.8 260 28-298 3-281 (307)
13 PRK06545 prephenate dehydrogen 100.0 4.7E-42 1E-46 330.6 24.4 256 32-298 1-272 (359)
14 PRK06444 prephenate dehydrogen 100.0 1.1E-38 2.4E-43 281.0 21.4 194 32-278 1-195 (197)
15 PRK14806 bifunctional cyclohex 100.0 3.1E-35 6.8E-40 307.5 25.5 257 31-298 3-277 (735)
16 PRK11861 bifunctional prephena 100.0 1.9E-35 4.1E-40 305.4 18.3 198 92-299 1-212 (673)
17 PLN02688 pyrroline-5-carboxyla 99.8 1.4E-19 3.1E-24 167.3 21.0 171 32-218 1-177 (266)
18 PRK11880 pyrroline-5-carboxyla 99.8 9.5E-20 2.1E-24 168.6 19.7 173 31-218 2-178 (267)
19 PRK12491 pyrroline-5-carboxyla 99.8 3.4E-19 7.3E-24 165.5 18.9 175 31-219 2-181 (272)
20 COG2084 MmsB 3-hydroxyisobutyr 99.8 2E-18 4.3E-23 159.6 22.7 172 32-215 1-178 (286)
21 PRK07679 pyrroline-5-carboxyla 99.8 2.1E-18 4.5E-23 160.9 22.8 175 29-218 1-182 (279)
22 PF03446 NAD_binding_2: NAD bi 99.8 9E-20 2E-24 156.9 7.9 157 31-199 1-162 (163)
23 PRK15059 tartronate semialdehy 99.8 1.3E-17 2.8E-22 156.5 20.5 171 32-215 1-176 (292)
24 TIGR01505 tartro_sem_red 2-hyd 99.8 2.4E-17 5.3E-22 154.5 19.7 172 33-216 1-177 (291)
25 TIGR01692 HIBADH 3-hydroxyisob 99.8 2.1E-17 4.7E-22 154.7 18.7 169 36-216 1-174 (288)
26 COG0345 ProC Pyrroline-5-carbo 99.8 6.6E-17 1.4E-21 148.2 20.2 173 31-219 1-178 (266)
27 PRK08293 3-hydroxybutyryl-CoA 99.8 2.5E-17 5.5E-22 154.2 17.8 182 30-225 2-210 (287)
28 PRK12490 6-phosphogluconate de 99.7 1.2E-16 2.6E-21 150.5 20.3 170 32-214 1-178 (299)
29 PTZ00431 pyrroline carboxylate 99.7 1E-16 2.2E-21 148.1 18.6 166 30-219 2-174 (260)
30 PRK15461 NADH-dependent gamma- 99.7 2.2E-16 4.8E-21 148.5 20.5 169 32-211 2-174 (296)
31 PRK11559 garR tartronate semia 99.7 2.2E-16 4.8E-21 148.3 19.7 171 31-213 2-177 (296)
32 PRK06129 3-hydroxyacyl-CoA deh 99.7 1.6E-15 3.4E-20 143.5 25.4 165 31-209 2-192 (308)
33 KOG0409 Predicted dehydrogenas 99.7 2.7E-16 5.9E-21 143.6 18.6 176 29-215 33-213 (327)
34 TIGR00872 gnd_rel 6-phosphoglu 99.7 9.9E-16 2.2E-20 144.2 22.2 170 32-213 1-176 (298)
35 PLN02350 phosphogluconate dehy 99.7 3.7E-16 8.1E-21 155.2 20.0 174 29-215 4-195 (493)
36 PRK09599 6-phosphogluconate de 99.7 1.2E-15 2.6E-20 143.8 21.1 171 32-215 1-180 (301)
37 PRK06928 pyrroline-5-carboxyla 99.7 3.6E-16 7.7E-21 145.7 16.9 174 31-219 1-181 (277)
38 PRK07680 late competence prote 99.7 6.5E-16 1.4E-20 143.6 18.4 171 32-218 1-177 (273)
39 PRK06476 pyrroline-5-carboxyla 99.7 3.8E-16 8.2E-21 144.0 16.5 163 32-216 1-168 (258)
40 PRK12557 H(2)-dependent methyl 99.7 5.9E-15 1.3E-19 141.0 24.2 174 32-217 1-207 (342)
41 PRK07634 pyrroline-5-carboxyla 99.7 1.8E-15 3.9E-20 138.1 17.4 176 29-219 2-183 (245)
42 PTZ00142 6-phosphogluconate de 99.7 2.3E-15 4.9E-20 149.4 19.0 170 31-213 1-187 (470)
43 PRK07066 3-hydroxybutyryl-CoA 99.7 5.4E-14 1.2E-18 133.2 26.6 168 30-211 6-195 (321)
44 PRK07531 bifunctional 3-hydrox 99.7 3.6E-14 7.8E-19 142.4 26.6 165 31-209 4-190 (495)
45 TIGR00873 gnd 6-phosphoglucona 99.7 4.7E-15 1E-19 147.1 18.9 169 33-213 1-184 (467)
46 PRK06130 3-hydroxybutyryl-CoA 99.6 5.9E-15 1.3E-19 139.6 17.2 161 31-205 4-185 (311)
47 PRK05808 3-hydroxybutyryl-CoA 99.6 6.3E-15 1.4E-19 137.6 17.1 160 30-206 2-188 (282)
48 PRK09260 3-hydroxybutyryl-CoA 99.6 8E-15 1.7E-19 137.3 17.3 153 32-199 2-181 (288)
49 PLN02545 3-hydroxybutyryl-CoA 99.6 1.7E-14 3.7E-19 135.5 17.3 154 30-199 3-183 (295)
50 PLN02858 fructose-bisphosphate 99.6 4.9E-14 1.1E-18 155.1 20.2 174 30-215 3-184 (1378)
51 TIGR01724 hmd_rel H2-forming N 99.6 4.8E-13 1E-17 124.4 23.6 178 32-215 1-209 (341)
52 PF02737 3HCDH_N: 3-hydroxyacy 99.6 1.9E-14 4.1E-19 125.8 13.0 151 33-198 1-177 (180)
53 PRK07530 3-hydroxybutyryl-CoA 99.6 6.2E-14 1.3E-18 131.6 17.3 154 30-199 3-183 (292)
54 PRK06035 3-hydroxyacyl-CoA deh 99.6 4.9E-14 1.1E-18 132.2 16.4 154 31-199 3-185 (291)
55 PRK00094 gpsA NAD(P)H-dependen 99.6 3.2E-14 6.9E-19 135.0 14.8 161 31-201 1-180 (325)
56 PRK05479 ketol-acid reductoiso 99.6 1.5E-13 3.2E-18 130.1 18.1 159 28-196 14-177 (330)
57 PLN02858 fructose-bisphosphate 99.6 1.5E-13 3.3E-18 151.3 20.7 172 30-213 323-502 (1378)
58 TIGR00465 ilvC ketol-acid redu 99.6 6.6E-13 1.4E-17 125.5 21.3 184 30-227 2-206 (314)
59 TIGR03026 NDP-sugDHase nucleot 99.6 1.3E-13 2.8E-18 135.4 17.1 175 32-215 1-215 (411)
60 COG0240 GpsA Glycerol-3-phosph 99.6 1.1E-13 2.4E-18 129.6 15.4 209 31-254 1-234 (329)
61 PRK11064 wecC UDP-N-acetyl-D-m 99.5 1E-12 2.2E-17 129.1 22.1 235 29-275 1-307 (415)
62 PRK07819 3-hydroxybutyryl-CoA 99.5 5.8E-13 1.2E-17 124.7 17.3 154 31-199 5-186 (286)
63 PRK14619 NAD(P)H-dependent gly 99.5 4.8E-13 1E-17 126.5 12.6 145 30-200 3-155 (308)
64 PF10727 Rossmann-like: Rossma 99.5 5E-14 1.1E-18 115.8 5.0 115 29-148 8-127 (127)
65 TIGR01915 npdG NADPH-dependent 99.5 1.7E-12 3.6E-17 117.0 14.5 165 32-206 1-195 (219)
66 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.4 2.6E-12 5.6E-17 128.9 15.9 155 30-199 4-184 (503)
67 PRK14618 NAD(P)H-dependent gly 99.4 1.1E-12 2.3E-17 125.2 12.5 155 31-201 4-179 (328)
68 PRK08229 2-dehydropantoate 2-r 99.4 2.3E-11 5E-16 116.4 21.6 168 31-213 2-190 (341)
69 PRK08268 3-hydroxy-acyl-CoA de 99.4 3.2E-12 6.8E-17 128.5 15.7 154 30-199 6-186 (507)
70 PF03807 F420_oxidored: NADP o 99.4 4.6E-13 1E-17 104.5 7.2 89 33-124 1-95 (96)
71 PTZ00345 glycerol-3-phosphate 99.4 9.2E-12 2E-16 119.9 16.4 210 30-254 10-261 (365)
72 COG1250 FadB 3-hydroxyacyl-CoA 99.4 6.9E-12 1.5E-16 117.4 14.4 152 30-196 2-179 (307)
73 COG2085 Predicted dinucleotide 99.4 8E-12 1.7E-16 109.9 13.9 163 31-203 1-183 (211)
74 PRK09287 6-phosphogluconate de 99.4 1.5E-11 3.3E-16 121.7 16.5 160 42-214 1-177 (459)
75 PRK12439 NAD(P)H-dependent gly 99.4 1.3E-11 2.7E-16 118.5 15.3 165 30-206 6-190 (341)
76 PF01210 NAD_Gly3P_dh_N: NAD-d 99.4 1.7E-12 3.6E-17 111.0 8.0 129 33-167 1-148 (157)
77 PRK11730 fadB multifunctional 99.4 1.6E-11 3.5E-16 128.2 16.8 164 30-209 312-501 (715)
78 TIGR02440 FadJ fatty oxidation 99.4 2.3E-11 4.9E-16 126.8 17.2 162 30-207 303-491 (699)
79 TIGR02437 FadB fatty oxidation 99.3 2.4E-11 5.1E-16 126.8 17.2 165 29-209 311-501 (714)
80 TIGR03376 glycerol3P_DH glycer 99.3 1.9E-11 4.2E-16 116.8 14.7 206 33-252 1-248 (342)
81 TIGR02441 fa_ox_alpha_mit fatt 99.3 2.2E-11 4.7E-16 127.4 15.8 156 29-199 333-514 (737)
82 PRK12921 2-dehydropantoate 2-r 99.3 1.1E-10 2.4E-15 109.8 19.0 169 32-210 1-187 (305)
83 COG1023 Gnd Predicted 6-phosph 99.3 2.9E-11 6.2E-16 107.5 13.7 167 32-211 1-175 (300)
84 TIGR00112 proC pyrroline-5-car 99.3 4.6E-11 1E-15 109.4 14.6 152 55-220 10-162 (245)
85 PRK06522 2-dehydropantoate 2-r 99.3 8E-11 1.7E-15 110.6 16.4 167 32-209 1-183 (304)
86 PRK11154 fadJ multifunctional 99.3 5.5E-11 1.2E-15 124.2 16.5 155 30-199 308-489 (708)
87 PRK15182 Vi polysaccharide bio 99.3 8.9E-11 1.9E-15 115.6 17.1 175 30-215 5-215 (425)
88 PRK14620 NAD(P)H-dependent gly 99.3 7.2E-11 1.6E-15 112.5 15.7 170 32-211 1-190 (326)
89 PRK06249 2-dehydropantoate 2-r 99.3 5.7E-10 1.2E-14 105.8 21.0 175 28-211 2-197 (313)
90 PRK15057 UDP-glucose 6-dehydro 99.3 2.1E-10 4.5E-15 111.8 17.8 171 32-216 1-205 (388)
91 cd01065 NAD_bind_Shikimate_DH 99.2 1.8E-11 4E-16 103.6 6.3 116 29-150 17-142 (155)
92 COG4007 Predicted dehydrogenas 99.2 2.6E-09 5.7E-14 95.9 19.3 167 31-203 1-198 (340)
93 PRK07574 formate dehydrogenase 99.2 8.2E-10 1.8E-14 107.1 15.7 111 28-139 189-300 (385)
94 COG1004 Ugd Predicted UDP-gluc 99.1 1.6E-09 3.4E-14 103.4 16.4 170 32-211 1-209 (414)
95 COG1893 ApbA Ketopantoate redu 99.1 6.7E-09 1.5E-13 98.2 20.3 236 32-276 1-279 (307)
96 PF02826 2-Hacid_dh_C: D-isome 99.1 9.9E-11 2.2E-15 102.1 6.9 110 28-139 33-143 (178)
97 COG0362 Gnd 6-phosphogluconate 99.1 8.9E-10 1.9E-14 104.4 13.0 170 30-211 2-186 (473)
98 PLN03139 formate dehydrogenase 99.1 2.4E-09 5.2E-14 103.8 16.3 111 28-139 196-307 (386)
99 PLN02353 probable UDP-glucose 99.1 4.5E-09 9.7E-14 104.7 16.9 175 31-212 1-220 (473)
100 PF03721 UDPG_MGDP_dh_N: UDP-g 99.1 1.9E-10 4.1E-15 101.0 6.1 98 32-131 1-128 (185)
101 PRK13243 glyoxylate reductase; 99.0 9E-10 2E-14 105.3 10.2 109 28-140 147-257 (333)
102 PRK12480 D-lactate dehydrogena 99.0 1.5E-09 3.3E-14 103.5 11.2 106 28-139 143-250 (330)
103 KOG3124 Pyrroline-5-carboxylat 99.0 1.4E-08 3E-13 91.5 16.2 173 32-218 1-178 (267)
104 PRK13403 ketol-acid reductoiso 99.0 1.7E-09 3.7E-14 101.6 9.6 161 28-199 13-181 (335)
105 COG0111 SerA Phosphoglycerate 99.0 5.7E-09 1.2E-13 99.2 12.9 111 28-140 139-250 (324)
106 PRK06436 glycerate dehydrogena 99.0 1.4E-08 3E-13 95.8 14.9 106 27-139 118-225 (303)
107 PF07991 IlvN: Acetohydroxy ac 99.0 2.1E-09 4.6E-14 91.0 8.4 91 30-123 3-95 (165)
108 COG0677 WecC UDP-N-acetyl-D-ma 99.0 2E-08 4.3E-13 95.7 15.3 170 32-209 10-216 (436)
109 PRK05708 2-dehydropantoate 2-r 99.0 2.5E-08 5.5E-13 94.3 16.0 171 31-212 2-188 (305)
110 TIGR02853 spore_dpaA dipicolin 98.9 5.2E-09 1.1E-13 98.0 10.3 94 29-128 149-245 (287)
111 PRK08605 D-lactate dehydrogena 98.9 4.8E-09 1E-13 100.3 10.0 106 28-138 143-251 (332)
112 PRK15469 ghrA bifunctional gly 98.9 2.1E-08 4.5E-13 95.0 14.0 109 29-140 134-243 (312)
113 PRK08269 3-hydroxybutyryl-CoA 98.9 3.9E-08 8.4E-13 93.3 15.0 145 42-200 1-180 (314)
114 KOG2305 3-hydroxyacyl-CoA dehy 98.9 3.8E-09 8.2E-14 93.4 6.6 162 30-205 2-190 (313)
115 TIGR01327 PGDH D-3-phosphoglyc 98.9 9.4E-09 2E-13 104.0 9.9 110 28-139 135-245 (525)
116 PRK00257 erythronate-4-phospha 98.8 2.9E-08 6.4E-13 96.2 12.4 104 29-138 114-222 (381)
117 PRK13581 D-3-phosphoglycerate 98.8 1.5E-08 3.3E-13 102.6 10.6 108 28-139 137-246 (526)
118 COG1052 LdhA Lactate dehydroge 98.8 2E-08 4.4E-13 95.3 10.8 109 28-139 143-252 (324)
119 PRK11790 D-3-phosphoglycerate 98.8 6.1E-08 1.3E-12 95.2 14.2 107 28-139 148-255 (409)
120 PF02558 ApbA: Ketopantoate re 98.8 3.3E-08 7.1E-13 83.4 9.3 113 34-151 1-127 (151)
121 PLN02928 oxidoreductase family 98.8 2.6E-08 5.6E-13 95.8 9.7 110 28-139 156-278 (347)
122 PRK08410 2-hydroxyacid dehydro 98.8 2.9E-08 6.3E-13 94.1 9.1 107 28-140 142-249 (311)
123 PRK15438 erythronate-4-phospha 98.8 2.6E-08 5.7E-13 96.3 8.6 104 29-138 114-222 (378)
124 PRK15409 bifunctional glyoxyla 98.7 4.3E-08 9.3E-13 93.3 9.9 110 28-140 142-253 (323)
125 KOG2304 3-hydroxyacyl-CoA dehy 98.7 8.7E-09 1.9E-13 91.1 4.5 155 30-198 10-195 (298)
126 PRK05225 ketol-acid reductoiso 98.7 2.9E-07 6.2E-12 89.9 15.0 163 27-199 32-208 (487)
127 PRK08306 dipicolinate synthase 98.7 8E-08 1.7E-12 90.5 10.7 94 30-128 151-246 (296)
128 PRK06487 glycerate dehydrogena 98.7 6.8E-08 1.5E-12 91.8 8.6 104 28-139 145-249 (317)
129 PRK06932 glycerate dehydrogena 98.7 6.7E-08 1.5E-12 91.7 8.0 105 28-139 144-249 (314)
130 PLN02306 hydroxypyruvate reduc 98.7 4.2E-07 9E-12 88.5 13.6 111 28-139 162-288 (386)
131 PRK13304 L-aspartate dehydroge 98.6 1.2E-07 2.5E-12 88.0 9.3 120 31-153 1-127 (265)
132 PRK13302 putative L-aspartate 98.6 1.4E-07 3E-12 87.7 9.8 79 29-108 4-87 (271)
133 KOG0069 Glyoxylate/hydroxypyru 98.6 1.8E-07 3.9E-12 88.5 10.0 110 29-140 160-270 (336)
134 KOG2653 6-phosphogluconate deh 98.5 4.1E-07 8.8E-12 85.4 9.3 169 31-211 6-190 (487)
135 PF00670 AdoHcyase_NAD: S-aden 98.5 7.7E-07 1.7E-11 75.8 9.0 93 29-128 21-115 (162)
136 cd01075 NAD_bind_Leu_Phe_Val_D 98.5 1.3E-06 2.9E-11 77.5 10.3 91 28-125 25-117 (200)
137 TIGR00745 apbA_panE 2-dehydrop 98.4 1.9E-05 4.1E-10 73.6 17.3 162 41-213 1-180 (293)
138 PTZ00075 Adenosylhomocysteinas 98.4 1.2E-06 2.5E-11 86.8 8.7 92 29-126 252-344 (476)
139 cd05213 NAD_bind_Glutamyl_tRNA 98.4 1.5E-06 3.2E-11 82.5 9.0 94 29-123 176-273 (311)
140 PF01408 GFO_IDH_MocA: Oxidore 98.3 1.7E-06 3.7E-11 69.8 7.6 77 32-108 1-82 (120)
141 smart00859 Semialdhyde_dh Semi 98.3 1.6E-06 3.5E-11 70.6 7.5 92 33-125 1-101 (122)
142 PF01488 Shikimate_DH: Shikima 98.3 6.6E-07 1.4E-11 74.5 5.1 95 28-128 9-113 (135)
143 PRK14194 bifunctional 5,10-met 98.3 1.7E-06 3.7E-11 81.0 8.2 75 29-124 157-232 (301)
144 TIGR01763 MalateDH_bact malate 98.3 4.6E-06 9.9E-11 78.9 10.8 89 32-124 2-119 (305)
145 PRK05476 S-adenosyl-L-homocyst 98.3 5.2E-06 1.1E-10 81.5 11.1 93 29-127 210-303 (425)
146 PRK06223 malate dehydrogenase; 98.3 6.1E-06 1.3E-10 78.0 11.1 90 31-124 2-120 (307)
147 PRK00961 H(2)-dependent methyl 98.3 8.5E-05 1.8E-09 67.8 17.6 128 74-214 128-257 (342)
148 TIGR00936 ahcY adenosylhomocys 98.3 5.7E-06 1.2E-10 80.8 10.8 92 29-126 193-285 (406)
149 TIGR01723 hmd_TIGR 5,10-methen 98.3 9.1E-05 2E-09 67.8 17.6 116 74-202 126-243 (340)
150 COG0059 IlvC Ketol-acid reduct 98.3 3.5E-06 7.7E-11 77.9 8.7 161 29-199 16-184 (338)
151 PRK04148 hypothetical protein; 98.2 5E-06 1.1E-10 68.8 8.3 94 28-124 14-112 (134)
152 cd00401 AdoHcyase S-adenosyl-L 98.2 6.4E-06 1.4E-10 80.7 9.8 90 30-125 201-291 (413)
153 PLN02494 adenosylhomocysteinas 98.2 7.7E-06 1.7E-10 80.8 10.3 90 29-125 252-343 (477)
154 PTZ00082 L-lactate dehydrogena 98.2 1.1E-05 2.3E-10 76.9 11.0 66 29-96 4-82 (321)
155 TIGR00507 aroE shikimate 5-deh 98.2 3.5E-06 7.6E-11 78.3 7.2 97 30-126 116-217 (270)
156 PTZ00117 malate dehydrogenase; 98.2 1.3E-05 2.7E-10 76.4 11.0 114 30-147 4-147 (319)
157 COG1748 LYS9 Saccharopine dehy 98.2 4.3E-06 9.3E-11 80.9 7.5 88 31-123 1-99 (389)
158 PF01118 Semialdhyde_dh: Semia 98.2 9E-06 1.9E-10 66.2 8.2 87 33-125 1-99 (121)
159 PRK14188 bifunctional 5,10-met 98.2 9.6E-06 2.1E-10 76.0 9.1 75 29-125 156-232 (296)
160 COG0569 TrkA K+ transport syst 98.1 8.9E-06 1.9E-10 73.6 8.6 93 32-124 1-102 (225)
161 PRK00048 dihydrodipicolinate r 98.1 2E-05 4.4E-10 72.7 10.9 100 31-135 1-104 (257)
162 PRK06141 ornithine cyclodeamin 98.1 5.8E-06 1.3E-10 78.5 6.4 90 29-124 123-220 (314)
163 TIGR02371 ala_DH_arch alanine 98.1 1.4E-05 3.1E-10 76.2 9.0 93 29-127 126-226 (325)
164 PRK12549 shikimate 5-dehydroge 98.1 5.9E-06 1.3E-10 77.4 6.1 118 29-150 125-253 (284)
165 COG1712 Predicted dinucleotide 98.1 1.5E-05 3.3E-10 70.8 8.2 92 32-126 1-96 (255)
166 KOG2711 Glycerol-3-phosphate d 98.0 6.5E-05 1.4E-09 70.6 12.0 160 29-199 19-215 (372)
167 PF13380 CoA_binding_2: CoA bi 98.0 3.5E-05 7.5E-10 62.5 8.8 103 32-145 1-107 (116)
168 PRK00045 hemA glutamyl-tRNA re 98.0 1.6E-05 3.5E-10 78.6 8.0 94 29-123 180-280 (423)
169 PRK08300 acetaldehyde dehydrog 98.0 3.4E-05 7.4E-10 72.4 9.7 94 29-126 2-104 (302)
170 cd01080 NAD_bind_m-THF_DH_Cycl 98.0 1.9E-05 4.2E-10 68.2 7.3 77 28-125 41-118 (168)
171 PRK13303 L-aspartate dehydroge 98.0 3.3E-05 7.1E-10 71.6 9.0 77 31-108 1-81 (265)
172 TIGR01921 DAP-DH diaminopimela 98.0 4.9E-05 1.1E-09 72.1 10.1 87 30-122 2-90 (324)
173 PRK00258 aroE shikimate 5-dehy 98.0 1.2E-05 2.6E-10 75.0 5.8 95 29-124 121-222 (278)
174 cd05297 GH4_alpha_glucosidase_ 98.0 3.9E-05 8.4E-10 75.9 9.6 71 32-103 1-89 (423)
175 cd05291 HicDH_like L-2-hydroxy 97.9 6.6E-05 1.4E-09 71.1 10.6 65 32-98 1-78 (306)
176 TIGR01035 hemA glutamyl-tRNA r 97.9 3.5E-05 7.5E-10 76.1 8.7 93 29-123 178-277 (417)
177 PLN00203 glutamyl-tRNA reducta 97.9 2.8E-05 6.2E-10 78.4 8.0 94 29-123 264-369 (519)
178 cd01339 LDH-like_MDH L-lactate 97.9 4.3E-05 9.3E-10 72.1 8.7 62 34-97 1-75 (300)
179 PRK14179 bifunctional 5,10-met 97.9 3E-05 6.5E-10 72.2 7.2 76 29-125 156-232 (284)
180 PRK00066 ldh L-lactate dehydro 97.9 0.00012 2.6E-09 69.5 11.5 69 27-97 2-82 (315)
181 TIGR03215 ac_ald_DH_ac acetald 97.9 9.1E-05 2E-09 69.2 10.2 90 32-125 2-97 (285)
182 PRK07340 ornithine cyclodeamin 97.9 6.1E-05 1.3E-09 71.2 8.9 92 29-127 123-221 (304)
183 TIGR00518 alaDH alanine dehydr 97.9 6.2E-05 1.3E-09 73.1 8.9 94 30-125 166-269 (370)
184 COG5495 Uncharacterized conser 97.9 0.00011 2.5E-09 65.5 9.7 162 30-206 9-176 (289)
185 cd05292 LDH_2 A subgroup of L- 97.8 4.1E-05 9E-10 72.5 7.4 65 32-98 1-77 (308)
186 KOG0068 D-3-phosphoglycerate d 97.8 6.6E-05 1.4E-09 70.5 8.0 92 30-124 145-237 (406)
187 PF01113 DapB_N: Dihydrodipico 97.8 7.9E-05 1.7E-09 61.0 7.6 100 32-136 1-112 (124)
188 PRK13301 putative L-aspartate 97.8 9.2E-05 2E-09 68.1 8.6 92 31-125 2-97 (267)
189 PRK08618 ornithine cyclodeamin 97.8 7.2E-05 1.6E-09 71.4 8.3 92 29-127 125-225 (325)
190 PRK04207 glyceraldehyde-3-phos 97.8 9.8E-05 2.1E-09 70.9 9.1 90 31-125 1-111 (341)
191 PRK00683 murD UDP-N-acetylmura 97.8 5.6E-05 1.2E-09 74.6 7.5 70 29-99 1-70 (418)
192 PRK06046 alanine dehydrogenase 97.8 7.3E-05 1.6E-09 71.4 8.1 92 29-127 127-227 (326)
193 cd05293 LDH_1 A subgroup of L- 97.8 0.00017 3.8E-09 68.4 10.5 65 31-97 3-80 (312)
194 TIGR02992 ectoine_eutC ectoine 97.8 9.9E-05 2.2E-09 70.5 8.9 90 30-125 128-226 (326)
195 PRK00436 argC N-acetyl-gamma-g 97.8 9.7E-05 2.1E-09 71.1 8.7 90 31-125 2-101 (343)
196 PRK09496 trkA potassium transp 97.8 6.6E-05 1.4E-09 74.5 7.5 90 32-122 1-99 (453)
197 cd01078 NAD_bind_H4MPT_DH NADP 97.7 7.7E-05 1.7E-09 65.6 7.0 93 29-125 26-131 (194)
198 COG0673 MviM Predicted dehydro 97.7 9.7E-05 2.1E-09 70.3 8.3 78 29-106 1-85 (342)
199 cd00650 LDH_MDH_like NAD-depen 97.7 0.00021 4.5E-09 66.1 10.0 88 34-124 1-120 (263)
200 TIGR00036 dapB dihydrodipicoli 97.7 0.00048 1E-08 63.9 12.0 100 32-136 2-113 (266)
201 PF00056 Ldh_1_N: lactate/mala 97.7 4.3E-05 9.3E-10 64.1 4.5 65 32-97 1-78 (141)
202 PRK14175 bifunctional 5,10-met 97.7 0.00011 2.5E-09 68.5 7.7 76 29-125 156-232 (286)
203 COG0373 HemA Glutamyl-tRNA red 97.7 0.00012 2.6E-09 71.5 8.1 92 29-123 176-274 (414)
204 PRK08291 ectoine utilization p 97.7 0.00018 3.8E-09 68.9 8.7 91 29-125 130-229 (330)
205 TIGR01850 argC N-acetyl-gamma- 97.7 0.00021 4.6E-09 68.8 9.0 89 32-125 1-101 (346)
206 TIGR00561 pntA NAD(P) transhyd 97.6 0.00025 5.5E-09 71.2 9.4 89 31-125 164-286 (511)
207 PLN02819 lysine-ketoglutarate 97.6 0.00022 4.8E-09 77.0 8.6 90 30-123 568-679 (1042)
208 PF02254 TrkA_N: TrkA-N domain 97.6 0.00027 5.8E-09 56.6 7.1 91 34-124 1-98 (116)
209 COG0169 AroE Shikimate 5-dehyd 97.6 0.00023 5E-09 66.4 7.5 118 30-150 125-252 (283)
210 cd00300 LDH_like L-lactate deh 97.5 0.00048 1E-08 65.1 9.6 87 34-124 1-116 (300)
211 COG2910 Putative NADH-flavin r 97.5 0.00012 2.6E-09 63.4 4.9 67 32-99 1-73 (211)
212 PRK07589 ornithine cyclodeamin 97.5 0.0003 6.5E-09 67.6 8.0 94 30-127 128-229 (346)
213 PRK06823 ornithine cyclodeamin 97.5 0.00048 1E-08 65.4 9.4 93 29-127 126-226 (315)
214 PRK13940 glutamyl-tRNA reducta 97.5 0.00018 3.9E-09 70.8 6.7 72 28-100 178-254 (414)
215 PRK09424 pntA NAD(P) transhydr 97.5 0.00038 8.3E-09 70.1 8.9 94 30-124 164-286 (509)
216 cd05191 NAD_bind_amino_acid_DH 97.5 0.00066 1.4E-08 51.8 8.2 65 29-123 21-86 (86)
217 cd05212 NAD_bind_m-THF_DH_Cycl 97.5 0.00065 1.4E-08 56.9 8.7 78 28-126 25-103 (140)
218 PLN02602 lactate dehydrogenase 97.5 0.00062 1.3E-08 65.6 9.8 64 32-97 38-114 (350)
219 PRK11579 putative oxidoreducta 97.5 0.0005 1.1E-08 66.0 9.1 76 31-108 4-84 (346)
220 PRK06407 ornithine cyclodeamin 97.5 0.00045 9.7E-09 65.3 8.3 93 29-127 115-216 (301)
221 PRK14192 bifunctional 5,10-met 97.4 0.00053 1.2E-08 64.1 8.3 76 29-125 157-233 (283)
222 PRK14189 bifunctional 5,10-met 97.4 0.0004 8.6E-09 64.8 7.2 76 29-125 156-232 (285)
223 PRK14874 aspartate-semialdehyd 97.4 0.0005 1.1E-08 65.9 8.0 90 31-125 1-96 (334)
224 PF02882 THF_DHG_CYH_C: Tetrah 97.4 0.0011 2.5E-08 56.6 9.3 77 29-126 34-111 (160)
225 COG0039 Mdh Malate/lactate deh 97.4 0.00018 4E-09 67.8 4.6 63 32-96 1-77 (313)
226 cd05294 LDH-like_MDH_nadp A la 97.4 0.00097 2.1E-08 63.2 9.6 64 32-97 1-81 (309)
227 PRK15076 alpha-galactosidase; 97.4 0.00053 1.1E-08 68.0 8.1 68 31-99 1-86 (431)
228 cd01079 NAD_bind_m-THF_DH NAD 97.4 0.00066 1.4E-08 59.6 7.7 93 28-126 59-159 (197)
229 PRK03659 glutathione-regulated 97.4 0.00058 1.3E-08 70.6 8.5 72 31-102 400-478 (601)
230 PF10100 DUF2338: Uncharacteri 97.4 0.0049 1.1E-07 59.6 14.0 183 31-217 1-220 (429)
231 PF01262 AlaDh_PNT_C: Alanine 97.4 0.00026 5.5E-09 61.1 5.0 93 30-123 19-139 (168)
232 PRK09310 aroDE bifunctional 3- 97.4 0.00031 6.8E-09 70.5 6.3 86 29-125 330-418 (477)
233 COG1064 AdhP Zn-dependent alco 97.4 0.00086 1.9E-08 63.9 8.9 90 29-123 165-259 (339)
234 COG2423 Predicted ornithine cy 97.4 0.00067 1.4E-08 64.7 8.1 89 30-124 129-226 (330)
235 cd05311 NAD_bind_2_malic_enz N 97.4 0.0016 3.5E-08 59.0 10.2 89 29-123 23-128 (226)
236 PRK12548 shikimate 5-dehydroge 97.4 0.00046 9.9E-09 64.8 6.9 94 29-123 124-236 (289)
237 PRK06718 precorrin-2 dehydroge 97.3 0.001 2.2E-08 59.2 8.6 80 28-108 7-90 (202)
238 PF03435 Saccharop_dh: Sacchar 97.3 0.00028 6.1E-09 68.8 5.2 86 34-124 1-99 (386)
239 PRK12550 shikimate 5-dehydroge 97.3 0.00048 1E-08 64.1 6.3 114 31-150 122-242 (272)
240 PRK10206 putative oxidoreducta 97.3 0.00068 1.5E-08 65.2 7.4 78 31-108 1-84 (344)
241 PRK05671 aspartate-semialdehyd 97.3 0.001 2.2E-08 63.8 8.2 90 30-125 3-99 (336)
242 TIGR01759 MalateDH-SF1 malate 97.3 0.0027 6E-08 60.5 11.1 67 30-97 2-88 (323)
243 PLN02383 aspartate semialdehyd 97.3 0.00093 2E-08 64.3 8.0 89 30-125 6-102 (344)
244 PLN02968 Probable N-acetyl-gam 97.3 0.00098 2.1E-08 65.0 8.1 90 30-125 37-136 (381)
245 PRK10669 putative cation:proto 97.3 0.0011 2.4E-08 67.9 8.9 71 31-101 417-494 (558)
246 PF02423 OCD_Mu_crystall: Orni 97.2 0.00031 6.8E-09 66.7 4.5 94 30-127 127-228 (313)
247 cd01337 MDH_glyoxysomal_mitoch 97.2 0.0011 2.3E-08 62.9 7.9 89 32-124 1-118 (310)
248 cd05211 NAD_bind_Glu_Leu_Phe_V 97.2 0.003 6.5E-08 56.8 10.5 91 28-124 20-128 (217)
249 PF02629 CoA_binding: CoA bind 97.2 0.00039 8.5E-09 54.2 4.1 77 31-109 3-83 (96)
250 PRK14027 quinate/shikimate deh 97.2 0.00053 1.2E-08 64.2 5.6 105 29-134 125-242 (283)
251 PRK03562 glutathione-regulated 97.2 0.0012 2.6E-08 68.5 8.5 72 31-102 400-478 (621)
252 cd01338 MDH_choloroplast_like 97.2 0.0014 3.1E-08 62.4 8.3 66 31-97 2-87 (322)
253 TIGR02356 adenyl_thiF thiazole 97.2 0.0012 2.7E-08 58.6 7.4 36 29-64 19-55 (202)
254 PRK06719 precorrin-2 dehydroge 97.2 0.0019 4.2E-08 55.1 8.3 78 28-109 10-91 (157)
255 PRK11863 N-acetyl-gamma-glutam 97.2 0.0015 3.2E-08 61.9 8.3 80 31-125 2-83 (313)
256 PRK10792 bifunctional 5,10-met 97.2 0.0013 2.8E-08 61.4 7.4 75 29-124 157-232 (285)
257 PRK12749 quinate/shikimate deh 97.2 0.0012 2.6E-08 62.0 7.3 93 30-123 123-233 (288)
258 cd05290 LDH_3 A subgroup of L- 97.1 0.0012 2.6E-08 62.5 7.3 63 33-97 1-77 (307)
259 TIGR01809 Shik-DH-AROM shikima 97.1 0.00087 1.9E-08 62.7 6.2 70 30-100 124-202 (282)
260 PRK05442 malate dehydrogenase; 97.1 0.0022 4.9E-08 61.2 8.9 67 30-97 3-89 (326)
261 PRK14191 bifunctional 5,10-met 97.1 0.0012 2.6E-08 61.6 6.6 76 29-125 155-231 (285)
262 COG2344 AT-rich DNA-binding pr 97.1 0.00067 1.5E-08 58.8 4.6 84 25-108 78-166 (211)
263 PRK09496 trkA potassium transp 97.1 0.0023 4.9E-08 63.5 9.0 94 30-124 230-332 (453)
264 TIGR02354 thiF_fam2 thiamine b 97.1 0.0019 4.1E-08 57.4 7.5 35 29-63 19-54 (200)
265 COG0002 ArgC Acetylglutamate s 97.1 0.0016 3.5E-08 61.8 7.3 92 30-125 1-103 (349)
266 PRK14982 acyl-ACP reductase; P 97.1 0.0013 2.8E-08 63.0 6.7 90 29-123 153-246 (340)
267 PRK05472 redox-sensing transcr 97.1 0.00063 1.4E-08 60.9 4.4 78 30-108 83-166 (213)
268 cd01076 NAD_bind_1_Glu_DH NAD( 97.1 0.0043 9.3E-08 56.2 9.8 92 28-125 28-138 (227)
269 PRK14176 bifunctional 5,10-met 97.1 0.0022 4.7E-08 59.9 7.9 75 30-125 163-238 (287)
270 PRK06199 ornithine cyclodeamin 97.1 0.0015 3.2E-08 63.7 7.1 92 29-124 153-260 (379)
271 TIGR02717 AcCoA-syn-alpha acet 97.0 0.0044 9.6E-08 61.8 10.5 85 30-122 6-96 (447)
272 PRK12475 thiamine/molybdopteri 97.0 0.0022 4.8E-08 61.6 8.0 36 29-64 22-58 (338)
273 PF13241 NAD_binding_7: Putati 97.0 0.0017 3.7E-08 51.3 6.1 88 28-124 4-92 (103)
274 cd00704 MDH Malate dehydrogena 97.0 0.0032 7E-08 60.0 9.1 64 32-96 1-84 (323)
275 PRK08040 putative semialdehyde 97.0 0.0018 3.9E-08 62.0 7.1 91 29-125 2-99 (336)
276 PRK00141 murD UDP-N-acetylmura 97.0 0.0039 8.4E-08 62.6 9.8 68 28-96 12-82 (473)
277 PLN00112 malate dehydrogenase 97.0 0.0078 1.7E-07 59.7 11.6 94 29-124 98-227 (444)
278 CHL00194 ycf39 Ycf39; Provisio 97.0 0.0017 3.6E-08 61.5 6.6 65 32-97 1-73 (317)
279 TIGR01761 thiaz-red thiazoliny 97.0 0.0033 7.2E-08 60.4 8.7 67 30-98 2-72 (343)
280 TIGR01470 cysG_Nterm siroheme 97.0 0.0044 9.5E-08 55.3 8.9 73 29-103 7-84 (205)
281 PRK01390 murD UDP-N-acetylmura 97.0 0.0024 5.2E-08 63.7 8.0 65 30-95 8-72 (460)
282 PRK08664 aspartate-semialdehyd 97.0 0.0027 5.9E-08 61.2 8.0 91 29-125 1-109 (349)
283 PRK14177 bifunctional 5,10-met 97.0 0.0031 6.7E-08 58.8 7.9 76 29-125 157-233 (284)
284 PF13460 NAD_binding_10: NADH( 96.9 0.0024 5.2E-08 55.0 6.8 62 34-98 1-70 (183)
285 PRK14173 bifunctional 5,10-met 96.9 0.0025 5.4E-08 59.5 7.2 76 29-125 153-229 (287)
286 PRK02318 mannitol-1-phosphate 96.9 0.0015 3.2E-08 63.8 6.0 77 32-108 1-100 (381)
287 PLN02516 methylenetetrahydrofo 96.9 0.0033 7.1E-08 59.0 7.9 76 29-125 165-241 (299)
288 PRK14172 bifunctional 5,10-met 96.9 0.0025 5.5E-08 59.2 7.1 76 29-125 156-232 (278)
289 PRK14169 bifunctional 5,10-met 96.9 0.0033 7.1E-08 58.6 7.8 76 29-125 154-230 (282)
290 PTZ00325 malate dehydrogenase; 96.9 0.0019 4.1E-08 61.6 6.3 66 30-97 7-85 (321)
291 TIGR01851 argC_other N-acetyl- 96.9 0.004 8.6E-08 58.8 8.4 78 32-124 2-81 (310)
292 PRK14190 bifunctional 5,10-met 96.9 0.0032 7E-08 58.7 7.6 76 29-125 156-232 (284)
293 PRK14186 bifunctional 5,10-met 96.9 0.0028 6E-08 59.5 7.2 76 29-125 156-232 (297)
294 TIGR01296 asd_B aspartate-semi 96.9 0.0024 5.1E-08 61.4 6.9 87 33-124 1-93 (339)
295 PRK14180 bifunctional 5,10-met 96.9 0.0035 7.7E-08 58.4 7.6 76 29-125 156-232 (282)
296 PRK14170 bifunctional 5,10-met 96.8 0.0033 7.1E-08 58.6 7.2 76 29-125 155-231 (284)
297 PRK14187 bifunctional 5,10-met 96.8 0.004 8.7E-08 58.3 7.8 75 29-124 158-233 (294)
298 TIGR01772 MDH_euk_gproteo mala 96.8 0.0011 2.4E-08 62.8 4.0 88 33-124 1-117 (312)
299 PRK06349 homoserine dehydrogen 96.8 0.0027 5.9E-08 62.9 6.9 70 30-99 2-83 (426)
300 PRK14166 bifunctional 5,10-met 96.8 0.0034 7.4E-08 58.5 7.0 76 29-125 155-231 (282)
301 PRK03369 murD UDP-N-acetylmura 96.8 0.0039 8.4E-08 62.9 8.0 67 30-97 11-79 (488)
302 COG4074 Mth H2-forming N5,N10- 96.8 0.056 1.2E-06 48.3 14.2 131 74-217 126-258 (343)
303 PRK06728 aspartate-semialdehyd 96.8 0.0044 9.6E-08 59.5 7.9 89 30-125 4-101 (347)
304 PRK05678 succinyl-CoA syntheta 96.8 0.013 2.8E-07 55.0 10.9 88 30-125 7-100 (291)
305 PLN00106 malate dehydrogenase 96.8 0.0022 4.8E-08 61.1 5.7 65 31-97 18-95 (323)
306 PRK01710 murD UDP-N-acetylmura 96.8 0.0047 1E-07 61.7 8.3 66 30-96 13-85 (458)
307 PRK14183 bifunctional 5,10-met 96.8 0.0039 8.4E-08 58.1 7.1 76 29-125 155-231 (281)
308 PLN02520 bifunctional 3-dehydr 96.8 0.0023 5E-08 65.1 6.1 95 29-123 377-475 (529)
309 PRK14178 bifunctional 5,10-met 96.8 0.0029 6.4E-08 58.8 6.2 76 29-125 150-226 (279)
310 PRK14171 bifunctional 5,10-met 96.8 0.004 8.6E-08 58.2 7.1 75 29-124 157-232 (288)
311 PRK14193 bifunctional 5,10-met 96.8 0.004 8.8E-08 58.0 7.1 76 29-125 156-234 (284)
312 cd01487 E1_ThiF_like E1_ThiF_l 96.8 0.0053 1.2E-07 53.2 7.4 32 33-64 1-33 (174)
313 PRK00421 murC UDP-N-acetylmura 96.8 0.0047 1E-07 61.7 8.1 66 30-96 6-74 (461)
314 PLN02616 tetrahydrofolate dehy 96.8 0.0047 1E-07 59.2 7.6 75 29-124 229-304 (364)
315 TIGR01758 MDH_euk_cyt malate d 96.7 0.0094 2E-07 56.9 9.6 64 33-97 1-84 (324)
316 cd01483 E1_enzyme_family Super 96.7 0.007 1.5E-07 50.4 7.7 32 33-64 1-33 (143)
317 TIGR01546 GAPDH-II_archae glyc 96.7 0.0049 1.1E-07 58.9 7.5 66 34-100 1-87 (333)
318 PRK01438 murD UDP-N-acetylmura 96.7 0.0046 9.9E-08 62.0 7.7 69 28-97 13-87 (480)
319 PRK00676 hemA glutamyl-tRNA re 96.7 0.0043 9.3E-08 59.3 7.1 64 27-96 170-234 (338)
320 PRK14182 bifunctional 5,10-met 96.7 0.0045 9.8E-08 57.6 7.0 76 29-125 155-231 (282)
321 PRK14106 murD UDP-N-acetylmura 96.7 0.0057 1.2E-07 60.7 8.2 69 29-98 3-78 (450)
322 TIGR01019 sucCoAalpha succinyl 96.7 0.011 2.3E-07 55.5 9.5 92 30-126 5-99 (286)
323 PF03447 NAD_binding_3: Homose 96.7 0.0051 1.1E-07 49.5 6.5 80 38-122 1-89 (117)
324 PRK02472 murD UDP-N-acetylmura 96.7 0.021 4.5E-07 56.7 12.0 66 30-96 4-76 (447)
325 PLN02897 tetrahydrofolate dehy 96.7 0.0045 9.7E-08 59.1 6.7 76 29-125 212-288 (345)
326 PRK14168 bifunctional 5,10-met 96.7 0.0063 1.4E-07 57.1 7.6 75 29-124 159-238 (297)
327 TIGR01757 Malate-DH_plant mala 96.6 0.018 4E-07 56.1 11.0 68 29-97 42-129 (387)
328 TIGR00978 asd_EA aspartate-sem 96.6 0.0056 1.2E-07 58.8 7.4 89 32-125 1-106 (341)
329 PRK05086 malate dehydrogenase; 96.6 0.0053 1.2E-07 58.3 6.9 89 32-124 1-119 (312)
330 COG0499 SAM1 S-adenosylhomocys 96.6 0.006 1.3E-07 58.1 6.9 89 30-123 208-296 (420)
331 PRK14181 bifunctional 5,10-met 96.6 0.0066 1.4E-07 56.7 7.1 76 29-125 151-231 (287)
332 PRK12769 putative oxidoreducta 96.6 0.0084 1.8E-07 62.7 8.7 69 29-98 325-422 (654)
333 PRK06598 aspartate-semialdehyd 96.6 0.0065 1.4E-07 58.8 7.2 89 31-125 1-100 (369)
334 TIGR01771 L-LDH-NAD L-lactate 96.5 0.0093 2E-07 56.3 8.1 62 36-98 1-74 (299)
335 cd00757 ThiF_MoeB_HesA_family 96.5 0.0083 1.8E-07 54.3 7.2 36 29-64 19-55 (228)
336 PRK07688 thiamine/molybdopteri 96.5 0.009 2E-07 57.4 7.7 36 29-64 22-58 (339)
337 COG0136 Asd Aspartate-semialde 96.5 0.0094 2E-07 56.6 7.6 89 31-125 1-99 (334)
338 PRK12809 putative oxidoreducta 96.5 0.01 2.2E-07 61.9 8.7 69 29-98 308-405 (639)
339 PF03720 UDPG_MGDP_dh_C: UDP-g 96.5 0.0048 1E-07 49.0 4.7 81 43-125 19-103 (106)
340 COG0686 Ald Alanine dehydrogen 96.5 0.0056 1.2E-07 57.3 5.7 91 31-123 168-268 (371)
341 PRK08644 thiamine biosynthesis 96.4 0.011 2.3E-07 53.0 7.3 35 29-63 26-61 (212)
342 TIGR02355 moeB molybdopterin s 96.4 0.0071 1.5E-07 55.3 6.1 36 29-64 22-58 (240)
343 PRK02006 murD UDP-N-acetylmura 96.4 0.012 2.5E-07 59.5 8.1 65 30-95 6-76 (498)
344 COG1063 Tdh Threonine dehydrog 96.4 0.013 2.7E-07 56.6 7.9 87 33-123 171-269 (350)
345 PRK05690 molybdopterin biosynt 96.3 0.013 2.8E-07 53.7 7.6 35 30-64 31-66 (245)
346 PF05368 NmrA: NmrA-like famil 96.3 0.0084 1.8E-07 53.9 6.2 64 34-98 1-74 (233)
347 cd01336 MDH_cytoplasmic_cytoso 96.3 0.0084 1.8E-07 57.3 6.5 65 31-97 2-87 (325)
348 KOG2741 Dimeric dihydrodiol de 96.3 0.026 5.6E-07 53.6 9.5 81 28-108 3-92 (351)
349 PRK06153 hypothetical protein; 96.3 0.01 2.2E-07 57.6 7.0 34 30-63 175-209 (393)
350 TIGR01532 E4PD_g-proteo D-eryt 96.3 0.012 2.6E-07 56.2 7.3 89 33-125 1-122 (325)
351 PRK09880 L-idonate 5-dehydroge 96.3 0.028 6.1E-07 53.6 9.9 89 30-123 169-266 (343)
352 cd05298 GH4_GlvA_pagL_like Gly 96.3 0.024 5.3E-07 56.3 9.7 68 32-100 1-86 (437)
353 PRK14185 bifunctional 5,10-met 96.3 0.015 3.3E-07 54.4 7.6 76 29-125 155-235 (293)
354 TIGR01318 gltD_gamma_fam gluta 96.3 0.017 3.6E-07 58.0 8.4 69 30-99 140-237 (467)
355 COG0289 DapB Dihydrodipicolina 96.3 0.043 9.3E-07 50.4 10.2 104 30-137 1-115 (266)
356 cd08230 glucose_DH Glucose deh 96.2 0.027 5.9E-07 53.9 9.6 69 30-99 172-249 (355)
357 PRK14184 bifunctional 5,10-met 96.2 0.014 3.1E-07 54.5 7.2 76 29-125 155-235 (286)
358 PRK14167 bifunctional 5,10-met 96.2 0.016 3.5E-07 54.4 7.6 75 29-124 155-234 (297)
359 PRK08223 hypothetical protein; 96.2 0.017 3.6E-07 54.1 7.6 35 30-64 26-61 (287)
360 PRK08762 molybdopterin biosynt 96.2 0.015 3.2E-07 56.7 7.6 35 29-63 133-168 (376)
361 PRK08328 hypothetical protein; 96.2 0.018 3.9E-07 52.3 7.6 36 30-65 26-62 (231)
362 KOG2666 UDP-glucose/GDP-mannos 96.2 0.014 3E-07 54.8 6.7 106 31-138 1-142 (481)
363 cd01485 E1-1_like Ubiquitin ac 96.2 0.012 2.7E-07 52.0 6.4 35 30-64 18-53 (198)
364 PRK04308 murD UDP-N-acetylmura 96.2 0.051 1.1E-06 54.0 11.3 66 30-96 4-75 (445)
365 TIGR03366 HpnZ_proposed putati 96.1 0.038 8.2E-07 51.2 9.7 47 30-76 120-167 (280)
366 PRK12814 putative NADPH-depend 96.1 0.022 4.8E-07 59.5 8.8 70 28-98 190-288 (652)
367 PF02056 Glyco_hydro_4: Family 96.1 0.018 4E-07 50.3 6.8 69 33-102 1-87 (183)
368 COG0190 FolD 5,10-methylene-te 96.1 0.019 4.2E-07 53.2 7.2 75 30-125 155-230 (283)
369 PRK14174 bifunctional 5,10-met 96.0 0.019 4E-07 54.0 6.8 76 29-125 157-237 (295)
370 cd01492 Aos1_SUMO Ubiquitin ac 96.0 0.027 5.8E-07 49.9 7.5 36 29-64 19-55 (197)
371 TIGR01082 murC UDP-N-acetylmur 96.0 0.02 4.4E-07 56.9 7.5 63 33-96 1-66 (448)
372 COG0771 MurD UDP-N-acetylmuram 96.0 0.017 3.6E-07 57.4 6.6 64 31-95 7-76 (448)
373 COG0026 PurK Phosphoribosylami 95.9 0.017 3.7E-07 55.3 6.2 63 31-94 1-68 (375)
374 PRK03803 murD UDP-N-acetylmura 95.9 0.024 5.3E-07 56.3 7.7 65 31-96 6-76 (448)
375 PRK08955 glyceraldehyde-3-phos 95.9 0.027 5.8E-07 53.9 7.4 90 32-125 3-121 (334)
376 TIGR01087 murD UDP-N-acetylmur 95.9 0.022 4.9E-07 56.3 7.1 63 33-96 1-70 (433)
377 cd08237 ribitol-5-phosphate_DH 95.8 0.049 1.1E-06 52.0 9.3 67 30-98 163-232 (341)
378 PRK12771 putative glutamate sy 95.8 0.019 4E-07 59.0 6.7 70 29-99 135-233 (564)
379 PRK14573 bifunctional D-alanyl 95.8 0.026 5.6E-07 60.5 8.0 67 29-96 2-71 (809)
380 TIGR03466 HpnA hopanoid-associ 95.8 0.014 3E-07 54.7 5.4 65 32-97 1-73 (328)
381 PLN02427 UDP-apiose/xylose syn 95.8 0.023 5E-07 55.2 6.9 68 28-96 11-94 (386)
382 PRK07236 hypothetical protein; 95.8 0.014 3.1E-07 56.7 5.4 38 28-65 3-40 (386)
383 cd08239 THR_DH_like L-threonin 95.8 0.057 1.2E-06 51.2 9.3 47 30-76 163-210 (339)
384 PF00070 Pyr_redox: Pyridine n 95.8 0.022 4.8E-07 42.4 5.2 34 33-66 1-34 (80)
385 PRK12409 D-amino acid dehydrog 95.8 0.014 2.9E-07 57.2 5.2 33 32-64 2-34 (410)
386 TIGR02822 adh_fam_2 zinc-bindi 95.8 0.058 1.3E-06 51.3 9.3 89 30-123 165-254 (329)
387 PRK02705 murD UDP-N-acetylmura 95.7 0.029 6.3E-07 55.9 7.4 64 33-97 2-77 (459)
388 PRK12810 gltD glutamate syntha 95.7 0.047 1E-06 54.8 8.8 36 29-64 141-176 (471)
389 PLN00198 anthocyanidin reducta 95.7 0.044 9.4E-07 52.1 8.2 41 26-66 4-45 (338)
390 cd05197 GH4_glycoside_hydrolas 95.7 0.045 9.8E-07 54.2 8.3 68 32-100 1-86 (425)
391 COG4408 Uncharacterized protei 95.7 0.2 4.3E-06 47.4 11.9 188 30-218 3-223 (431)
392 PRK05597 molybdopterin biosynt 95.7 0.034 7.4E-07 53.8 7.3 36 29-64 26-62 (355)
393 KOG1502 Flavonol reductase/cin 95.6 0.055 1.2E-06 51.4 8.4 67 30-97 5-88 (327)
394 PRK06270 homoserine dehydrogen 95.6 0.04 8.6E-07 53.0 7.7 69 31-99 2-100 (341)
395 PF00899 ThiF: ThiF family; I 95.6 0.016 3.4E-07 47.9 4.2 34 31-64 2-36 (135)
396 PRK15181 Vi polysaccharide bio 95.6 0.031 6.7E-07 53.6 6.7 37 29-65 13-50 (348)
397 PLN02662 cinnamyl-alcohol dehy 95.6 0.057 1.2E-06 50.6 8.4 37 30-66 3-40 (322)
398 cd01486 Apg7 Apg7 is an E1-lik 95.5 0.03 6.6E-07 52.6 6.3 31 33-63 1-32 (307)
399 PLN02353 probable UDP-glucose 95.5 0.054 1.2E-06 54.4 8.5 120 5-126 297-450 (473)
400 COG1486 CelF Alpha-galactosida 95.5 0.075 1.6E-06 52.4 9.2 73 29-102 1-91 (442)
401 KOG1370 S-adenosylhomocysteine 95.5 0.036 7.8E-07 51.8 6.5 88 32-124 215-302 (434)
402 PRK05600 thiamine biosynthesis 95.5 0.043 9.3E-07 53.4 7.4 35 29-63 39-74 (370)
403 PRK03815 murD UDP-N-acetylmura 95.5 0.029 6.3E-07 55.2 6.3 61 32-95 1-61 (401)
404 TIGR01202 bchC 2-desacetyl-2-h 95.5 0.062 1.3E-06 50.6 8.3 86 30-123 144-231 (308)
405 PRK05562 precorrin-2 dehydroge 95.5 0.093 2E-06 47.4 9.0 78 29-108 23-105 (223)
406 PRK00711 D-amino acid dehydrog 95.5 0.02 4.4E-07 55.9 5.1 34 32-65 1-34 (416)
407 PRK03806 murD UDP-N-acetylmura 95.5 0.058 1.2E-06 53.5 8.4 66 30-96 5-73 (438)
408 PLN02695 GDP-D-mannose-3',5'-e 95.4 0.024 5.2E-07 55.0 5.4 37 28-64 18-55 (370)
409 cd05188 MDR Medium chain reduc 95.4 0.11 2.4E-06 46.7 9.6 91 29-124 133-233 (271)
410 PRK05653 fabG 3-ketoacyl-(acyl 95.4 0.036 7.7E-07 49.4 6.2 40 28-67 2-42 (246)
411 PLN03209 translocon at the inn 95.4 0.04 8.6E-07 56.3 7.0 38 30-67 79-117 (576)
412 TIGR01745 asd_gamma aspartate- 95.4 0.036 7.8E-07 53.6 6.4 88 32-125 1-99 (366)
413 PLN02896 cinnamyl-alcohol dehy 95.4 0.045 9.7E-07 52.4 7.1 39 28-66 7-46 (353)
414 PRK08163 salicylate hydroxylas 95.4 0.023 5.1E-07 55.1 5.2 36 30-65 3-38 (396)
415 PRK06753 hypothetical protein; 95.4 0.022 4.7E-07 54.8 4.9 34 32-65 1-34 (373)
416 PRK12779 putative bifunctional 95.4 0.043 9.3E-07 59.7 7.6 70 29-98 304-402 (944)
417 PRK14031 glutamate dehydrogena 95.3 0.1 2.3E-06 51.7 9.5 34 28-61 225-259 (444)
418 PRK06182 short chain dehydroge 95.3 0.045 9.8E-07 50.2 6.7 46 30-75 2-48 (273)
419 PRK06019 phosphoribosylaminoim 95.3 0.046 9.9E-07 53.1 7.0 63 31-94 2-69 (372)
420 KOG0022 Alcohol dehydrogenase, 95.3 0.034 7.5E-07 52.2 5.6 55 30-84 192-247 (375)
421 PLN02214 cinnamoyl-CoA reducta 95.3 0.059 1.3E-06 51.6 7.6 37 30-66 9-46 (342)
422 TIGR03026 NDP-sugDHase nucleot 95.3 0.064 1.4E-06 52.8 7.9 115 2-122 284-409 (411)
423 cd01489 Uba2_SUMO Ubiquitin ac 95.3 0.069 1.5E-06 50.7 7.8 32 33-64 1-33 (312)
424 PRK07494 2-octaprenyl-6-methox 95.2 0.028 6.1E-07 54.5 5.2 38 28-65 4-41 (388)
425 PF03059 NAS: Nicotianamine sy 95.2 0.022 4.8E-07 53.0 4.2 89 31-121 121-228 (276)
426 KOG2380 Prephenate dehydrogena 95.2 0.0012 2.5E-08 62.3 -4.2 128 22-152 353-480 (480)
427 PRK08374 homoserine dehydrogen 95.2 0.045 9.7E-07 52.6 6.5 86 31-120 2-119 (336)
428 PRK06392 homoserine dehydrogen 95.1 0.033 7.2E-07 53.2 5.3 22 32-53 1-22 (326)
429 PRK11908 NAD-dependent epimera 95.1 0.047 1E-06 52.1 6.3 64 31-95 1-75 (347)
430 PRK07403 glyceraldehyde-3-phos 95.1 0.085 1.8E-06 50.5 7.9 90 31-124 1-122 (337)
431 cd01484 E1-2_like Ubiquitin ac 95.1 0.07 1.5E-06 48.6 7.1 32 33-64 1-33 (234)
432 PLN02657 3,8-divinyl protochlo 95.1 0.025 5.5E-07 55.3 4.5 37 29-65 58-95 (390)
433 PF04321 RmlD_sub_bind: RmlD s 95.1 0.021 4.6E-07 53.4 3.7 58 32-97 1-60 (286)
434 PLN02650 dihydroflavonol-4-red 95.1 0.076 1.6E-06 50.8 7.7 37 30-66 4-41 (351)
435 PF01494 FAD_binding_3: FAD bi 95.1 0.033 7.1E-07 52.4 5.1 33 33-65 3-35 (356)
436 PRK04663 murD UDP-N-acetylmura 95.1 0.13 2.7E-06 51.2 9.3 64 31-96 7-76 (438)
437 PRK13535 erythrose 4-phosphate 95.1 0.036 7.9E-07 53.1 5.3 91 31-125 1-124 (336)
438 PRK05868 hypothetical protein; 95.0 0.033 7.3E-07 54.0 5.1 35 31-65 1-35 (372)
439 PF13450 NAD_binding_8: NAD(P) 95.0 0.044 9.4E-07 39.8 4.5 30 36-65 1-30 (68)
440 TIGR01777 yfcH conserved hypot 95.0 0.033 7.2E-07 51.2 4.8 63 34-97 1-66 (292)
441 PRK11749 dihydropyrimidine deh 95.0 0.1 2.3E-06 52.0 8.7 37 28-64 137-173 (457)
442 PLN02272 glyceraldehyde-3-phos 95.0 0.064 1.4E-06 52.7 6.9 31 32-62 86-118 (421)
443 PTZ00023 glyceraldehyde-3-phos 95.0 0.073 1.6E-06 51.0 7.1 89 32-124 3-122 (337)
444 PLN02989 cinnamyl-alcohol dehy 95.0 0.098 2.1E-06 49.3 8.0 37 30-66 4-41 (325)
445 TIGR01317 GOGAT_sm_gam glutama 95.0 0.11 2.4E-06 52.4 8.7 35 30-64 142-176 (485)
446 COG1648 CysG Siroheme synthase 94.9 0.14 3.1E-06 45.8 8.4 78 29-108 10-92 (210)
447 cd05296 GH4_P_beta_glucosidase 94.9 0.079 1.7E-06 52.4 7.4 68 32-100 1-87 (419)
448 PRK07411 hypothetical protein; 94.9 0.06 1.3E-06 52.7 6.5 36 29-64 36-72 (390)
449 PRK07878 molybdopterin biosynt 94.9 0.07 1.5E-06 52.3 6.9 35 30-64 41-76 (392)
450 PRK10537 voltage-gated potassi 94.9 0.14 3.1E-06 50.1 8.9 69 31-101 240-315 (393)
451 KOG0023 Alcohol dehydrogenase, 94.8 0.082 1.8E-06 49.9 6.7 39 30-68 181-219 (360)
452 TIGR03201 dearomat_had 6-hydro 94.8 0.19 4.2E-06 48.0 9.6 47 30-76 166-212 (349)
453 COG1062 AdhC Zn-dependent alco 94.8 0.11 2.3E-06 49.5 7.5 72 29-100 184-266 (366)
454 TIGR03649 ergot_EASG ergot alk 94.8 0.054 1.2E-06 50.1 5.6 63 33-98 1-77 (285)
455 PRK15425 gapA glyceraldehyde-3 94.8 0.089 1.9E-06 50.3 7.1 89 32-124 3-121 (331)
456 PRK09414 glutamate dehydrogena 94.8 0.072 1.6E-06 52.9 6.7 94 29-125 230-346 (445)
457 PLN02477 glutamate dehydrogena 94.8 0.14 3.1E-06 50.3 8.7 91 29-125 204-313 (410)
458 PRK01368 murD UDP-N-acetylmura 94.8 0.1 2.2E-06 52.2 7.8 65 30-96 5-71 (454)
459 TIGR02622 CDP_4_6_dhtase CDP-g 94.8 0.066 1.4E-06 51.2 6.3 37 30-66 3-40 (349)
460 PLN02986 cinnamyl-alcohol dehy 94.8 0.15 3.3E-06 48.0 8.6 37 30-66 4-41 (322)
461 PRK07538 hypothetical protein; 94.7 0.04 8.7E-07 54.0 4.8 34 32-65 1-34 (413)
462 PLN02358 glyceraldehyde-3-phos 94.7 0.14 3.1E-06 49.1 8.3 35 31-65 5-41 (338)
463 PRK08849 2-octaprenyl-3-methyl 94.7 0.046 9.9E-07 53.1 5.2 34 31-64 3-36 (384)
464 PRK06901 aspartate-semialdehyd 94.7 0.032 7E-07 52.8 3.9 89 30-125 2-97 (322)
465 COG1090 Predicted nucleoside-d 94.7 0.058 1.3E-06 49.9 5.4 62 34-96 1-64 (297)
466 PTZ00187 succinyl-CoA syntheta 94.7 0.31 6.6E-06 46.3 10.4 93 30-126 28-124 (317)
467 PRK06847 hypothetical protein; 94.7 0.049 1.1E-06 52.4 5.3 36 30-65 3-38 (375)
468 PLN00125 Succinyl-CoA ligase [ 94.7 0.4 8.7E-06 45.2 11.1 93 28-126 9-105 (300)
469 COG4091 Predicted homoserine d 94.7 0.71 1.5E-05 44.2 12.6 43 28-70 14-58 (438)
470 cd05313 NAD_bind_2_Glu_DH NAD( 94.7 0.3 6.5E-06 45.0 10.1 34 28-61 35-69 (254)
471 cd05283 CAD1 Cinnamyl alcohol 94.7 0.25 5.3E-06 46.9 9.9 89 29-123 168-263 (337)
472 PRK05866 short chain dehydroge 94.7 0.091 2E-06 49.1 6.8 39 29-67 38-77 (293)
473 PRK05732 2-octaprenyl-6-methox 94.6 0.046 1E-06 52.9 4.9 35 29-63 1-38 (395)
474 cd08281 liver_ADH_like1 Zinc-d 94.6 0.17 3.8E-06 48.7 8.9 47 30-76 191-238 (371)
475 PRK07588 hypothetical protein; 94.6 0.047 1E-06 53.0 4.9 34 32-65 1-34 (391)
476 TIGR01214 rmlD dTDP-4-dehydror 94.6 0.07 1.5E-06 49.2 5.8 56 33-97 1-59 (287)
477 PRK08013 oxidoreductase; Provi 94.6 0.052 1.1E-06 53.1 5.1 35 31-65 3-37 (400)
478 COG0451 WcaG Nucleoside-diphos 94.5 0.068 1.5E-06 49.6 5.6 36 32-67 1-37 (314)
479 PLN02166 dTDP-glucose 4,6-dehy 94.5 0.087 1.9E-06 52.4 6.5 35 30-64 119-154 (436)
480 PRK08773 2-octaprenyl-3-methyl 94.5 0.057 1.2E-06 52.5 5.1 35 30-64 5-39 (392)
481 PRK13984 putative oxidoreducta 94.4 0.18 3.9E-06 52.2 9.0 70 28-98 280-378 (604)
482 cd01491 Ube1_repeat1 Ubiquitin 94.4 0.17 3.8E-06 47.4 8.0 36 29-64 17-53 (286)
483 PRK07364 2-octaprenyl-6-methox 94.4 0.059 1.3E-06 52.6 5.2 36 30-65 17-52 (415)
484 PF01266 DAO: FAD dependent ox 94.4 0.059 1.3E-06 50.7 5.0 31 33-63 1-31 (358)
485 COG0665 DadA Glycine/D-amino a 94.4 0.066 1.4E-06 51.6 5.4 37 29-65 2-38 (387)
486 PLN02206 UDP-glucuronate decar 94.4 0.1 2.3E-06 51.9 6.9 35 30-64 118-153 (442)
487 PRK04690 murD UDP-N-acetylmura 94.4 0.14 3E-06 51.4 7.8 66 30-96 7-77 (468)
488 PRK11259 solA N-methyltryptoph 94.4 0.059 1.3E-06 51.8 5.0 33 32-64 4-36 (376)
489 TIGR02469 CbiT precorrin-6Y C5 94.4 0.23 5.1E-06 39.3 7.7 87 30-119 19-118 (124)
490 PRK06057 short chain dehydroge 94.3 0.089 1.9E-06 47.7 5.8 40 28-67 4-44 (255)
491 PRK10637 cysG siroheme synthas 94.3 0.18 3.9E-06 50.4 8.4 76 28-105 9-89 (457)
492 COG0702 Predicted nucleoside-d 94.3 0.098 2.1E-06 47.5 5.9 65 32-98 1-73 (275)
493 COG0654 UbiH 2-polyprenyl-6-me 94.2 0.061 1.3E-06 52.4 4.8 33 31-63 2-34 (387)
494 PLN02686 cinnamoyl-CoA reducta 94.2 0.1 2.3E-06 50.5 6.3 39 28-66 50-89 (367)
495 PRK07045 putative monooxygenas 94.2 0.071 1.5E-06 51.7 5.1 36 30-65 4-39 (388)
496 PRK12826 3-ketoacyl-(acyl-carr 94.2 0.088 1.9E-06 47.2 5.4 38 29-66 4-42 (251)
497 PLN02948 phosphoribosylaminoim 94.2 0.14 3.1E-06 52.7 7.5 69 28-97 19-92 (577)
498 PRK08219 short chain dehydroge 94.2 0.1 2.3E-06 46.0 5.8 36 31-67 3-39 (227)
499 TIGR03219 salicylate_mono sali 94.2 0.065 1.4E-06 52.6 4.8 34 32-65 1-35 (414)
500 PRK06185 hypothetical protein; 94.1 0.069 1.5E-06 52.1 5.0 35 30-64 5-39 (407)
No 1
>PLN02256 arogenate dehydrogenase
Probab=100.00 E-value=3.8e-56 Score=418.00 Aligned_cols=294 Identities=66% Similarity=1.125 Sum_probs=262.2
Q ss_pred hhhHhhhhhcCCCccccchhhcccCCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhh
Q 044593 4 RHVIRAIDAAQPFDYESQLHTQYVKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLND 83 (335)
Q Consensus 4 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~ 83 (335)
-+..|+++++|+|||+++++.|+.++..++|+|||+|.||++++..|.+.|++|++||+++. .+.+.+.|+...++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~-~~~a~~~gv~~~~~~~e 87 (304)
T PLN02256 9 SLRVRAIDAAQPFDYESRLQEELEKSRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDY-SDIAAELGVSFFRDPDD 87 (304)
T ss_pred CcccccccccCCCChHhHHhHhhccCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccH-HHHHHHcCCeeeCCHHH
Confidence 35689999999999999999999999999999999999999999999999999999999974 35566778877677777
Q ss_pred HhhcCCCEEEEecCchhHHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCc
Q 044593 84 LCELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLP 163 (335)
Q Consensus 84 ~~~~~aDvVIlavp~~~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~ 163 (335)
++..++|+||+|||+..+.++++++..+.++++++|+|++|+|+.+++.+.+.++.+.+||++|||+|++.+...+.+.+
T Consensus 88 ~~~~~aDvVilavp~~~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~~~V~~HPmaG~e~~~~~~~~~~ 167 (304)
T PLN02256 88 FCEEHPDVVLLCTSILSTEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEFDILCTHPMFGPESGKGGWAGLP 167 (304)
T ss_pred HhhCCCCEEEEecCHHHHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCCCCeEEecCCCCCCCCCccccCCCe
Confidence 64136999999999999999999983256889999999999999999999998887778999999999998766678888
Q ss_pred ceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHhhhhHHHHHHHHHHcCCCCCCCCCcchhhHHHHH
Q 044593 164 FMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERFGVESSPINTKGYETLLDLV 243 (335)
Q Consensus 164 ~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la~aL~~~~~~~~~~~~~gf~~~~rl~ 243 (335)
+++++.++..+..+++.++.++++|+.+|+++++|++++||+++|++|||||++|.+|++...+..+++++||||+||++
T Consensus 168 ~~~~~~~i~~~~~~~~~~~~l~~l~~~lGa~v~~~~~eeHD~~vA~iShLpH~la~~L~~~~~~~~~~~~~gfrd~tria 247 (304)
T PLN02256 168 FVYDKVRIGDEGEREARCERFLDIFEEEGCRMVEMSCEEHDRYAAGSQFITHTVGRILGKMELESTPINTKGYETLLRLV 247 (304)
T ss_pred EEEecceecCCCCCHHHHHHHHHHHHHCCCEEEEeCHHHHhHHHHhhhhHHHHHHHHHHHcCCcccccccccHHHHHHHH
Confidence 88876543213345567889999999999999999999999999999999999999999876555689999999999999
Q ss_pred HHhhCCChHhHHHHHhhCHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCc
Q 044593 244 DNTKGDSFDLYYGLFMYNKNSLEQLQRLEMAFESIKQQLFGQMFRVYRKELFGSA 298 (335)
Q Consensus 244 ~~ia~~~~~lw~~I~~~N~~~~~~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~ 298 (335)
+|+.++||.||+|||..|++++++|++|++.|+++++.|+...++.||++||+.+
T Consensus 248 ~r~~~~~p~lw~dI~~~N~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 302 (304)
T PLN02256 248 ENTSSDSFDLYYGLFMYNPNATEELERLELAFDSVKKQLFGRLHDVLRKQLFEGS 302 (304)
T ss_pred HhhcCCCHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccC
Confidence 9999999999999999999999999999999999999999999999999999876
No 2
>PLN02712 arogenate dehydrogenase
Probab=100.00 E-value=2.1e-49 Score=406.06 Aligned_cols=293 Identities=67% Similarity=1.116 Sum_probs=261.6
Q ss_pred hHhhhhhcCCCccccchhhcccCCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHh
Q 044593 6 VIRAIDAAQPFDYESQLHTQYVKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLC 85 (335)
Q Consensus 6 ~~r~~~~~~~~~~~~~~~~~~~~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~ 85 (335)
.+|.++++|+|||+.......+....|||+|||+|+||+++|++|++.|++|++||++... +.+.+.|+....+.++++
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~Gv~~~~~~~el~ 422 (667)
T PLN02712 344 MMRFQGVAQKYEYNAQVSGCVNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKLGVSYFSDADDLC 422 (667)
T ss_pred hhhhhcccCCCCccchhhhccCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHHHcCCeEeCCHHHHH
Confidence 4899999999999999888878888999999999999999999999999999999999654 446678887667777765
Q ss_pred hcCCCEEEEecCchhHHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcce
Q 044593 86 ELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFM 165 (335)
Q Consensus 86 ~~~aDvVIlavp~~~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i 165 (335)
..++|+||+|||+..+.+++.++....++++++|+|++|+|..+.+.+.+.++.+.+|+++|||+|++.+..+|.+.+++
T Consensus 423 ~~~aDvVILavP~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~~HPm~G~e~~~~G~~~~~~l 502 (667)
T PLN02712 423 EEHPEVILLCTSILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILCTHPMFGPESGKNGWNNLAFV 502 (667)
T ss_pred hcCCCEEEECCChHHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceEeeCCCCCccccccchhhhhhh
Confidence 12589999999999999999988523578999999999999989999998888778899999999999865566667777
Q ss_pred ecccccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHhhhhHHHHHHHHHHcCCCCCCCCCcchhhHHHHHHH
Q 044593 166 YDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERFGVESSPINTKGYETLLDLVDN 245 (335)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la~aL~~~~~~~~~~~~~gf~~~~rl~~~ 245 (335)
|++.+++++....+.++.+.++|+.+|+++++|++++||+++|++||+||+++.+|.+.+.+..+++++||++++.|++|
T Consensus 503 f~~~~v~~~~~~~~~~~~l~~l~~~lGa~vv~ms~eeHD~~~A~vShLpHlla~~L~~~~~~~~~~~~~gfr~l~~Li~R 582 (667)
T PLN02712 503 FDKVRIGSDDRRVSRCDSFLDIFAREGCRMVEMSCAEHDWHAAGSQFITHTMGRLLEKLGLESTPINTKGYETLLNLVEN 582 (667)
T ss_pred ccCcEeCCCcchHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHCCCcccccccHHHHHHHHHHHh
Confidence 77765566655667788889999999999999999999999999999999999999988876678899999999999999
Q ss_pred hhCCChHhHHHHHhhCHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCch
Q 044593 246 TKGDSFDLYYGLFMYNKNSLEQLQRLEMAFESIKQQLFGQMFRVYRKELFGSAE 299 (335)
Q Consensus 246 ia~~~~~lw~~I~~~N~~~~~~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~ 299 (335)
++++||+||+|||+.||++++.|++|...|+.+++.|+.+.+..+|+++|+.++
T Consensus 583 ia~~~p~l~~dI~~~N~~a~~~l~~f~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 636 (667)
T PLN02712 583 TAGDSFDLYYGLFMYNVNAMEQLERLDLAFESLKKQLFGRLHGVLRKQLFKSSE 636 (667)
T ss_pred hcCCCHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCc
Confidence 999999999999999999999999999999999999999999999999999975
No 3
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.9e-48 Score=358.99 Aligned_cols=258 Identities=24% Similarity=0.380 Sum_probs=221.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCeEEEE--cCCCCcHHHHHhCCCcee--cCh-hhHhhcCCCEEEEecCchhHHHH
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVH--SRSDHSPAVRQQLNAPFF--ADL-NDLCELHPDVVLLSTSILSTQSV 104 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~--dr~~~~~~~a~~~g~~~~--~~~-~~~~~~~aDvVIlavp~~~~~~v 104 (335)
..++|+|+|+|+||+|+|+.|++.|+.|.++ |++....+.+.++|+... .+. .+.. .++|+||+|||...+.++
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~-~~aD~VivavPi~~~~~~ 80 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAA-AEADLVIVAVPIEATEEV 80 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhc-ccCCEEEEeccHHHHHHH
Confidence 4689999999999999999999999977555 555556676777888653 232 3344 679999999999999999
Q ss_pred HhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHH
Q 044593 105 LKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKF 184 (335)
Q Consensus 105 l~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v 184 (335)
++++. +.+++|++|+|++|+|..+++.+++.++.+.+|+++||||||+...+.|++..+++|| .+..+.+.++++
T Consensus 81 l~~l~-~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~~~~vltp----~~~~~~~~~~~~ 155 (279)
T COG0287 81 LKELA-PHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFENAVVVLTP----SEGTEKEWVEEV 155 (279)
T ss_pred HHHhc-ccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCCCCCCcccccccCCCEEEEcC----CCCCCHHHHHHH
Confidence 99996 6899999999999999999999999987655899999999997334678888888875 333346788999
Q ss_pred HHHHHhcCCEEEEeChHHHHHHHHHhhhhHHHHHHHHHHcCCC-------CCCCCCcchhhHHHHHHHhhCCChHhHHHH
Q 044593 185 LDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERFGVE-------SSPINTKGYETLLDLVDNTKGDSFDLYYGL 257 (335)
Q Consensus 185 ~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la~aL~~~~~~-------~~~~~~~gf~~~~rl~~~ia~~~~~lw~~I 257 (335)
.++|+.+|+++++|++++||++||++|||||+++.+|+....+ ...+++++||+++|+ +++||.||+||
T Consensus 156 ~~~~~~~ga~~v~~~~eeHD~~~a~vshLpH~~a~al~~~~~~~~~~~~~~~~~as~~frd~tRi----a~~~P~m~~dI 231 (279)
T COG0287 156 KRLWEALGARLVEMDAEEHDRVMAAVSHLPHAAALALANALAKLETEELLVLKLASGGFRDITRI----ASSDPEMYADI 231 (279)
T ss_pred HHHHHHcCCEEEEcChHHHhHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHhccccchhhHHHH----HcCChHHHHHH
Confidence 9999999999999999999999999999999999998754322 146889999999998 89999999999
Q ss_pred HhhCHhH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCc
Q 044593 258 FMYNKNS-LEQLQRLEMAFESIKQQLFGQMFRVYRKELFGSA 298 (335)
Q Consensus 258 ~~~N~~~-~~~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~ 298 (335)
+.+|+++ ++.+++|.+.|+++++.++++|.+.+.+ +|.++
T Consensus 232 ~~~N~~~~l~~i~~~~~~l~~l~~~i~~~d~~~l~~-~~~~a 272 (279)
T COG0287 232 QLSNKEALLEAIERFAKSLDELKELIENGDAEALAD-LFEEA 272 (279)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH-HHHHH
Confidence 9999995 7999999999999999999999998877 66554
No 4
>PLN02712 arogenate dehydrogenase
Probab=100.00 E-value=1.8e-45 Score=376.98 Aligned_cols=269 Identities=68% Similarity=1.164 Sum_probs=238.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhhcc
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSIP 109 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~l~ 109 (335)
..|+|+|||+|+||+++|..|++.|++|++||++... +.+.+.|+....+..+++..++|+||+|||+..+.+++.++.
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~~~~~~vl~~l~ 129 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAARSLGVSFFLDPHDLCERHPDVILLCTSIISTENVLKSLP 129 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHcCCEEeCCHHHHhhcCCCEEEEcCCHHHHHHHHHhhh
Confidence 4589999999999999999999999999999998543 457778887777777754246999999999999999999984
Q ss_pred ccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHHHHHH
Q 044593 110 FQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFA 189 (335)
Q Consensus 110 ~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l~~ 189 (335)
.+.++++++|+|++|+|..+.+.+.+.++.+..|+++|||||++....+|.+..+++++.+++.+....+.++++.++|+
T Consensus 130 ~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~~~~~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 209 (667)
T PLN02712 130 LQRLKRNTLFVDVLSVKEFAKNLLLDYLPEDFDIICSHPMFGPQSAKHGWDGLRFVYEKVRIGNEELRVSRCKSFLEVFE 209 (667)
T ss_pred hhcCCCCeEEEECCCCcHHHHHHHHHhcCCCCeEEeeCCcCCCccccchhccCcEEEeeccCCCccccHHHHHHHHHHHH
Confidence 24688999999999999999999999888778899999999999655567888888876444444444556788889999
Q ss_pred hcCCEEEEeChHHHHHHHHHhhhhHHHHHHHHHHcCCCCCCCCCcchhhHHHHHHHhhCCChHhHHHHHhhCHhHHHHHH
Q 044593 190 KEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERFGVESSPINTKGYETLLDLVDNTKGDSFDLYYGLFMYNKNSLEQLQ 269 (335)
Q Consensus 190 ~~G~~v~~~~~~eHD~~~A~~s~lph~la~aL~~~~~~~~~~~~~gf~~~~rl~~~ia~~~~~lw~~I~~~N~~~~~~l~ 269 (335)
.+|++++.|++++||+++|++|||||++|++|.....++.++.+++|+.+++++.|++++||+||+|||++||+.++.|+
T Consensus 210 ~lGa~v~~ms~eeHD~~~A~vshLpH~la~~L~~~~~~~~~~~~~~~~~~l~l~~Ria~~~p~L~~dI~~~N~~~~~~l~ 289 (667)
T PLN02712 210 REGCKMVEMSCTEHDKYAAESQFITHTVGRVLEMLKLESTPINTKGYESLLDLVENTCGDSFDLYYGLFMYNKNSLEMLE 289 (667)
T ss_pred HcCCEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCccHHHHHHHHHHHhcCCHHHHHHHHHhCHHHHHHHH
Confidence 99999999999999999999999999999999887777778889999999999999999999999999999996689999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhccCch
Q 044593 270 RLEMAFESIKQQLFGQMFRVYRKELFGSAE 299 (335)
Q Consensus 270 ~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~ 299 (335)
+|++.|+++++.|+.+.++.+|+++|+.++
T Consensus 290 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 319 (667)
T PLN02712 290 RLDLAFEALRKQLFGRLHGVVRKQLFGNEE 319 (667)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCc
Confidence 999999999999999999999999999975
No 5
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=100.00 E-value=9.3e-45 Score=338.20 Aligned_cols=253 Identities=17% Similarity=0.216 Sum_probs=213.7
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce-ecChhhHhhcCCCEEEEecCchhHHHHHhhccc
Q 044593 32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF-FADLNDLCELHPDVVLLSTSILSTQSVLKSIPF 110 (335)
Q Consensus 32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~-~~~~~~~~~~~aDvVIlavp~~~~~~vl~~l~~ 110 (335)
|||+|||+|+||+++|..|+++|++|++||++++..+.+.+.|... ..+..+.+ .++|+||+|+|+..+.++++++.
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~-~~aDlVilavp~~~~~~~~~~l~- 78 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLL-KDCDLVILALPIGLLLPPSEQLI- 78 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHh-cCCCEEEEcCCHHHHHHHHHHHH-
Confidence 5899999999999999999999999999999988877777777632 22222445 78999999999999999999985
Q ss_pred cccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCc------ccccCCCcceecccccCCChhHHHHHHHH
Q 044593 111 QRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESA------KSSWENLPFMYDKVRIGNDEERIKRVDKF 184 (335)
Q Consensus 111 ~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~------~~~~~g~~~i~~~~~~~~~~~~~~~~~~v 184 (335)
+.++++++|+|++|+|..+.+.+.+..+ +|+++|||+|++.. ...|.|.+++++| .+..+++.++.+
T Consensus 79 ~~l~~~~ii~d~~Svk~~~~~~~~~~~~---~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p----~~~~~~~~~~~v 151 (279)
T PRK07417 79 PALPPEAIVTDVGSVKAPIVEAWEKLHP---RFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTP----TENTDLNALAIV 151 (279)
T ss_pred HhCCCCcEEEeCcchHHHHHHHHHHhhC---CceeeCCcCCCCcchHHHhhHHHhCCCcEEEcc----CCCCCHHHHHHH
Confidence 6788999999999999988877765432 59999999999853 1246777777764 344456778999
Q ss_pred HHHHHhcCCEEEEeChHHHHHHHHHhhhhHHHHHHHHHHcCC---C-C-----CCCCCcchhhHHHHHHHhhCCChHhHH
Q 044593 185 LDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERFGV---E-S-----SPINTKGYETLLDLVDNTKGDSFDLYY 255 (335)
Q Consensus 185 ~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la~aL~~~~~---~-~-----~~~~~~gf~~~~rl~~~ia~~~~~lw~ 255 (335)
+++|+.+|++++++++++||+++|++||+||+++.+|++... + . ..++++||||+||+ +++||+||+
T Consensus 152 ~~l~~~lG~~~v~~~~~~hD~~~a~~shlp~~~a~~l~~~~~~~~~~~~~~~~~~~~~~gfrd~tRi----a~~~p~~w~ 227 (279)
T PRK07417 152 EELAVSLGSKIYTADPEEHDRAVALISHLPVMVSAALIQTCGTEKDPSVLKLAQNLASSGFADTSRV----GGGNPELGV 227 (279)
T ss_pred HHHHHHcCCEEEEcCHHHHHHHHHHHcchHHHHHHHHHHHHhhcccchhhHHhhhhccCcccccccc----cCCChHHHH
Confidence 999999999999999999999999999999999988865321 1 1 26889999999998 899999999
Q ss_pred HHHhhCHhH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCc
Q 044593 256 GLFMYNKNS-LEQLQRLEMAFESIKQQLFGQMFRVYRKELFGSA 298 (335)
Q Consensus 256 ~I~~~N~~~-~~~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~ 298 (335)
||+..|+++ +++|++|++.|+++++.|+++|.+.+++ +|.++
T Consensus 228 ~i~~~N~~~i~~~l~~~~~~l~~~~~~l~~~d~~~l~~-~~~~~ 270 (279)
T PRK07417 228 MMAEYNRAALLRSLASYRQSLDQLEELIEQENWSALEQ-KLEQT 270 (279)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH-HHHHH
Confidence 999999987 6999999999999999999999999888 66655
No 6
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=100.00 E-value=4.7e-45 Score=336.39 Aligned_cols=239 Identities=19% Similarity=0.281 Sum_probs=197.8
Q ss_pred HHHHHHHcC--CeEEEEcCCCCcHHHHHhCCCceecCh-hhHhhcCCCEEEEecCchhHHHHHhhccccccCCccEEEEc
Q 044593 46 LAKAFARHH--HTLLVHSRSDHSPAVRQQLNAPFFADL-NDLCELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDV 122 (335)
Q Consensus 46 iA~~L~~~G--~~V~~~dr~~~~~~~a~~~g~~~~~~~-~~~~~~~aDvVIlavp~~~~~~vl~~l~~~~l~~~~iVvd~ 122 (335)
||++|+++| ++|++||+++...+.+.+.|+...... .+.+ .++|+||+|||+..+.++++++. +.++++++|+|+
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~-~~~DlvvlavP~~~~~~~l~~~~-~~~~~~~iv~Dv 78 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAV-EDADLVVLAVPVSAIEDVLEEIA-PYLKPGAIVTDV 78 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHG-GCCSEEEE-S-HHHHHHHHHHHH-CGS-TTSEEEE-
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHh-cCCCEEEEcCCHHHHHHHHHHhh-hhcCCCcEEEEe
Confidence 688999999 689999999999888989999753322 4556 79999999999999999999996 689999999999
Q ss_pred CCCCchHHHHHHhhCCCCCceEeccccCCCCCc------ccccCCCcceecccccCCChhHHHHHHHHHHHHHhcCCEEE
Q 044593 123 LSVKEFPRNLFLKYLPQDFDILCTHPMFGPESA------KSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMV 196 (335)
Q Consensus 123 ~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~------~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~ 196 (335)
+|+|..+++.+++.++.+.+||++|||||++.+ .+.|.|.+++++| .+..+.+.++.++++|+.+|++++
T Consensus 79 ~SvK~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p----~~~~~~~~~~~~~~l~~~~Ga~~~ 154 (258)
T PF02153_consen 79 GSVKAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCP----GEDTDPEALELVEELWEALGARVV 154 (258)
T ss_dssp -S-CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEE----CTTS-HHHHHHHHHHHHHCT-EEE
T ss_pred CCCCHHHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEEEeC----CCCChHHHHHHHHHHHHHCCCEEE
Confidence 999999999999988877899999999999763 3567899988875 333456788999999999999999
Q ss_pred EeChHHHHHHHHHhhhhHHHHHHHHHHc----CCC---CCCCCCcchhhHHHHHHHhhCCChHhHHHHHhhCHhH-HHHH
Q 044593 197 EMSCFDHDKYAAGSQFVTHTMGRVLERF----GVE---SSPINTKGYETLLDLVDNTKGDSFDLYYGLFMYNKNS-LEQL 268 (335)
Q Consensus 197 ~~~~~eHD~~~A~~s~lph~la~aL~~~----~~~---~~~~~~~gf~~~~rl~~~ia~~~~~lw~~I~~~N~~~-~~~l 268 (335)
++++++||++||++||+||+++.+|+.. ..+ ...+++++|++++|+ ++++|+||++||..|+++ .+.|
T Consensus 155 ~~~~eeHD~~~A~vshlpH~~a~al~~~~~~~~~~~~~~~~~a~~~frd~tRi----a~~~p~l~~~I~~~N~~~~~~~l 230 (258)
T PF02153_consen 155 EMDAEEHDRIMAYVSHLPHLLASALANTLAELSSDDPDILRLAGGGFRDMTRI----ASSDPELWADIFLSNPENLLEAL 230 (258)
T ss_dssp E--HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHGTHHHHHHHGG----GGS-HHHHHHHHHHTHHHHHHHH
T ss_pred EcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHhhcchhHHhhccc----ccCChHHHHHHHHHCHHHHHHHH
Confidence 9999999999999999999999988762 111 235789999999987 899999999999999985 6999
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHh
Q 044593 269 QRLEMAFESIKQQLFGQMFRVYRKEL 294 (335)
Q Consensus 269 ~~~~~~l~~l~~~l~~~~~~~~~~~~ 294 (335)
++|++.|+++++.|+++|.++|+++|
T Consensus 231 ~~~~~~L~~l~~~l~~~d~~~l~~~l 256 (258)
T PF02153_consen 231 DEFIKELNELREALEAGDEEELEELL 256 (258)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHh
Confidence 99999999999999999999998843
No 7
>PRK08818 prephenate dehydrogenase; Provisional
Probab=100.00 E-value=1.4e-43 Score=339.30 Aligned_cols=241 Identities=17% Similarity=0.204 Sum_probs=197.8
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHHc-CCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593 30 TSLKIAVIGF-GNFGQFLAKAFARH-HHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS 107 (335)
Q Consensus 30 ~~~kI~IIG~-G~mG~siA~~L~~~-G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~ 107 (335)
..++|+|||+ |+||+|+|++|++. |++|+++|++.+. ..++.+.+ .+||+||+|||+..+.+++++
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~~-----------~~~~~~~v-~~aDlVilavPv~~~~~~l~~ 70 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADPG-----------SLDPATLL-QRADVLIFSAPIRHTAALIEE 70 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCccc-----------cCCHHHHh-cCCCEEEEeCCHHHHHHHHHH
Confidence 4679999999 99999999999974 8899999986321 23445666 799999999999999999999
Q ss_pred ccccc---cCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHH
Q 044593 108 IPFQR---LKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKF 184 (335)
Q Consensus 108 l~~~~---l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v 184 (335)
+. +. ++++++|+|++|+|..+++.+.+. ..+||++|||||++.+ ..|+|.++++|+. . ..+.++++
T Consensus 71 l~-~~~~~l~~~~iVtDVgSvK~~i~~~~~~~---~~~fVG~HPMaG~E~s-~lf~g~~~iltp~----~--~~~~~~~v 139 (370)
T PRK08818 71 YV-ALAGGRAAGQLWLDVTSIKQAPVAAMLAS---QAEVVGLHPMTAPPKS-PTLKGRVMVVCEA----R--LQHWSPWV 139 (370)
T ss_pred Hh-hhhcCCCCCeEEEECCCCcHHHHHHHHhc---CCCEEeeCCCCCCCCC-cccCCCeEEEeCC----C--chhHHHHH
Confidence 85 33 799999999999999888887543 3569999999999976 4688999888752 2 22346789
Q ss_pred HHHHHhcCCEEEEeChHHHHHHHHHhhhhHHHHHHHHHHcC----C---C---CCCCCCcchh-hH---HHHHHHhhCCC
Q 044593 185 LDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERFG----V---E---SSPINTKGYE-TL---LDLVDNTKGDS 250 (335)
Q Consensus 185 ~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la~aL~~~~----~---~---~~~~~~~gf~-~~---~rl~~~ia~~~ 250 (335)
+++|+.+|+++++|++++||++||++|||||+.+.+++... . . ...+.++||+ ++ +|+ +++|
T Consensus 140 ~~l~~~~Ga~v~~~~aeeHD~~~A~vS~LsHl~~l~~~~~~~~~~~~~~~~~~~~~f~~~gFr~d~t~iTRI----Ass~ 215 (370)
T PRK08818 140 QSLCSALQAECVYATPEHHDRVMALVQAMVHATHLAQAGVLRDYAPLLGELRALMPYRSASFELDTAVIARI----LSLN 215 (370)
T ss_pred HHHHHHcCCEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhccccchhhHHHhhhcchh----hcCC
Confidence 99999999999999999999999999988887655443221 0 0 1268899999 44 566 9999
Q ss_pred hHhHHHHHhhCHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh---ccCc
Q 044593 251 FDLYYGLFMYNKNSLEQLQRLEMAFESIKQQLFGQMFRVYRKEL---FGSA 298 (335)
Q Consensus 251 ~~lw~~I~~~N~~~~~~l~~~~~~l~~l~~~l~~~~~~~~~~~~---~~~~ 298 (335)
|+||+|||..|++.++.|++|++.|+++++.++++|.+.+.+ + |.++
T Consensus 216 P~mW~dI~~~N~~i~~~l~~~~~~L~~l~~~i~~~D~~~~~~-~~~~f~~a 265 (370)
T PRK08818 216 PSIYEDIQFGNPYVGEMLDRLLAQLQELRALVAQGDDAARAR-FRAQFLHA 265 (370)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHH
Confidence 999999999999557999999999999999999999987555 5 6665
No 8
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=100.00 E-value=2.2e-43 Score=341.10 Aligned_cols=247 Identities=21% Similarity=0.276 Sum_probs=206.9
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhhc
Q 044593 30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSI 108 (335)
Q Consensus 30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~l 108 (335)
..++|+||| +|.||+++|..|+++|++|++||+++. .+..+++ .+||+||+|+|...+.++++++
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~-------------~~~~~~~-~~aDlVilavP~~~~~~~~~~l 162 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW-------------DRAEDIL-ADAGMVIVSVPIHLTEEVIARL 162 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc-------------hhHHHHH-hcCCEEEEeCcHHHHHHHHHHH
Confidence 568999999 999999999999999999999998642 2344555 7899999999999999999998
Q ss_pred cccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHHHHH
Q 044593 109 PFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVF 188 (335)
Q Consensus 109 ~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l~ 188 (335)
. + ++++++|+|++|+|..++..+.+.++. .|+++|||+|++.+ ++.+..+++++ .++.+.++.+.++|
T Consensus 163 ~-~-l~~~~iv~Dv~SvK~~~~~~~~~~~~~--~fvg~HPm~G~~~~--~~~~~~vv~~~------~~~~~~~~~~~~l~ 230 (374)
T PRK11199 163 P-P-LPEDCILVDLTSVKNAPLQAMLAAHSG--PVLGLHPMFGPDVG--SLAKQVVVVCD------GRQPEAYQWLLEQI 230 (374)
T ss_pred h-C-CCCCcEEEECCCccHHHHHHHHHhCCC--CEEeeCCCCCCCCc--ccCCCEEEEcC------CCCchHHHHHHHHH
Confidence 5 5 899999999999999888888876543 69999999999864 46666555532 22345678899999
Q ss_pred HhcCCEEEEeChHHHHHHHHHhhhhHHHHHHHHHHc----CCCC---CCCCCcchhhHHHHHHHhhCCChHhHHHHHhhC
Q 044593 189 AKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERF----GVES---SPINTKGYETLLDLVDNTKGDSFDLYYGLFMYN 261 (335)
Q Consensus 189 ~~~G~~v~~~~~~eHD~~~A~~s~lph~la~aL~~~----~~~~---~~~~~~gf~~~~rl~~~ia~~~~~lw~~I~~~N 261 (335)
+.+|++++++++++||++||++||+||+++.+++.. +.+. ..+.+++|++.+.++.||+++||+||+|||..|
T Consensus 231 ~~lG~~v~~~~~~~HD~~~a~vshLpH~~a~al~~~l~~~~~~~~~~~~~~~~~fr~~la~~tRia~~~p~lw~dI~~~N 310 (374)
T PRK11199 231 QVWGARLHRISAVEHDQNMAFIQALRHFATFAYGLHLAKENVDLEQLLALSSPIYRLELAMVGRLFAQDPQLYADIIMSS 310 (374)
T ss_pred HHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhcChHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 999999999999999999999999999998886432 2221 247899999955555566999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCchhhHH
Q 044593 262 KNSLEQLQRLEMAFESIKQQLFGQMFRVYRKELFGSAEEEEE 303 (335)
Q Consensus 262 ~~~~~~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 303 (335)
+++++.|++|++.|+++++.++++|.+.+.+ +|.++.....
T Consensus 311 ~~~~~~l~~~~~~l~~l~~~l~~~d~~~l~~-~~~~a~~~~~ 351 (374)
T PRK11199 311 PENLALIKRYYQRFGEALELLEQGDKQAFID-SFRKVEHWFG 351 (374)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHHh
Confidence 9988999999999999999999999999888 6666654333
No 9
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=100.00 E-value=2.7e-43 Score=322.25 Aligned_cols=314 Identities=54% Similarity=0.848 Sum_probs=278.2
Q ss_pred chhhhHhhhhhcCCCccccchhhcccCCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecCh
Q 044593 2 PLRHVIRAIDAAQPFDYESQLHTQYVKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADL 81 (335)
Q Consensus 2 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~ 81 (335)
|--..+|+++++|.+||......-.......+|+|||+|+||..+|..|.++||.|.++||++ ....++..|...++.+
T Consensus 23 p~~~~~~a~~~~~i~d~~~~~~s~~~~k~tl~IaIIGfGnmGqflAetli~aGh~li~hsRsd-yssaa~~yg~~~ft~l 101 (480)
T KOG2380|consen 23 PRSLRIRAIDAAQIFDYMVSEDSIEQWKATLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD-YSSAAEKYGSAKFTLL 101 (480)
T ss_pred cHHHHHHhhhhhhhhhcccCcchhhhcccceEEEEEecCcHHHHHHHHHHhcCceeEecCcch-hHHHHHHhcccccccH
Confidence 345679999999999997665443344567899999999999999999999999999999998 5555788898888888
Q ss_pred hhHhhcCCCEEEEecCchhHHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCC
Q 044593 82 NDLCELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWEN 161 (335)
Q Consensus 82 ~~~~~~~aDvVIlavp~~~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g 161 (335)
.+++..+.|+|++||....+..++..+.++.++.|++++|+.|+|....+.+.+++|+++.++++|||+||+.....|.|
T Consensus 102 hdlcerhpDvvLlctsilsiekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPksvnh~wqg 181 (480)
T KOG2380|consen 102 HDLCERHPDVVLLCTSILSIEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPKSVNHEWQG 181 (480)
T ss_pred HHHHhcCCCEEEEEehhhhHHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCCcCCCcccc
Confidence 88887789999999999999999999976668999999999999999999999999999999999999999977778999
Q ss_pred CcceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHhhhhHHHHHHHHHHcCCCCCCCCCcchhhHHH
Q 044593 162 LPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERFGVESSPINTKGYETLLD 241 (335)
Q Consensus 162 ~~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la~aL~~~~~~~~~~~~~gf~~~~r 241 (335)
.|+++.+++++......+.++.+.++|...||++++|+.++||++.|-+|.++|.+...|..+.....|+.++||+.++.
T Consensus 182 lpfVydkvRig~~~~r~ercE~fleIf~cegckmVemS~eeHDkiaAdsQfVTHtagr~lg~aw~~syPintkGyEnlld 261 (480)
T KOG2380|consen 182 LPFVYDKVRIGYAASRPERCEFFLEIFACEGCKMVEMSYEEHDKIAADSQFVTHTAGRSLGSAWAKSYPINTKGYENLLD 261 (480)
T ss_pred CceEEEEeeccccccchHHHHHHHHHHHhcCCeEEEEEeecccccccchhHHHHHHHHHHHHhhhhhCceecccHHHHHH
Confidence 99999988887655667899999999999999999999999999999999999998887766555577899999999999
Q ss_pred HHHHhhCCChHhHHHHHhhCHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCchhhHHHHHHhhhhhhhhhhcCCC
Q 044593 242 LVDNTKGDSFDLYYGLFMYNKNSLEQLQRLEMAFESIKQQLFGQMFRVYRKELFGSAEEEEEEERVRLLSATKETQNGAP 321 (335)
Q Consensus 242 l~~~ia~~~~~lw~~I~~~N~~~~~~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (335)
|+.+|.+++|++|+++|.+||+++++|++|..+.+++++.+..+.+..+|+++|+.+ .+...+.. .+++.++..
T Consensus 262 LseniysdsfhlyyGLfiyNpnAleqleryd~afeelfkelfsrlhqeyrkq~f~ge-~fvfgkt~-----~lllnD~~l 335 (480)
T KOG2380|consen 262 LSENIYSDSFHLYYGLFIYNPNALEQLERYDTAFEELFKELFSRLHQEYRKQLFKGE-QFVFGKTG-----LLLLNDTIL 335 (480)
T ss_pred HHHHhhcchhhheeeeeeeChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccc-cccccccc-----cccccccch
Confidence 999999999999999999999999999999999999999999999999999999877 44444443 666666655
Q ss_pred c
Q 044593 322 V 322 (335)
Q Consensus 322 ~ 322 (335)
.
T Consensus 336 d 336 (480)
T KOG2380|consen 336 D 336 (480)
T ss_pred h
Confidence 4
No 10
>PRK08507 prephenate dehydrogenase; Validated
Probab=100.00 E-value=1.1e-42 Score=323.65 Aligned_cols=252 Identities=20% Similarity=0.271 Sum_probs=211.0
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCC--eEEEEcCCCCcHHHHHhCCCc-eecChhhHhhcCCCEEEEecCchhHHHHHhhc
Q 044593 32 LKIAVIGFGNFGQFLAKAFARHHH--TLLVHSRSDHSPAVRQQLNAP-FFADLNDLCELHPDVVLLSTSILSTQSVLKSI 108 (335)
Q Consensus 32 ~kI~IIG~G~mG~siA~~L~~~G~--~V~~~dr~~~~~~~a~~~g~~-~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~l 108 (335)
|||+|||+|+||+++|..|.+.|+ +|++||++++..+.+.+.|+. ...+..++. ++|+||+|||+..+.+++.++
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~--~aD~Vilavp~~~~~~~~~~l 78 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK--KCDVIFLAIPVDAIIEILPKL 78 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh--cCCEEEEeCcHHHHHHHHHHH
Confidence 589999999999999999999996 789999998877777778874 344566653 599999999999999999998
Q ss_pred cccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCc-c-----cccCCCcceecccccCCChhHHHHHH
Q 044593 109 PFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESA-K-----SSWENLPFMYDKVRIGNDEERIKRVD 182 (335)
Q Consensus 109 ~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~-~-----~~~~g~~~i~~~~~~~~~~~~~~~~~ 182 (335)
. + ++++++|+|++|+|..+.+.+.+.. +..|+++|||+|.++. + ..|.|..+++++ .+..+.+.++
T Consensus 79 ~-~-l~~~~iv~d~gs~k~~i~~~~~~~~--~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~----~~~~~~~~~~ 150 (275)
T PRK08507 79 L-D-IKENTTIIDLGSTKAKIIESVPKHI--RKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCD----VEKSGEKHQE 150 (275)
T ss_pred h-c-cCCCCEEEECccchHHHHHHHHHhc--CCCEEecCCcCcCchhhHHhccHHHhCCCeEEEec----CCCCCHHHHH
Confidence 5 6 8899999999999998888776653 2469999999987642 1 245677767753 3333456788
Q ss_pred HHHHHHHhcCCEEEEeChHHHHHHHHHhhhhHHHHHHHHHHcC---CCC---CCCCCcchhhHHHHHHHhhCCChHhHHH
Q 044593 183 KFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERFG---VES---SPINTKGYETLLDLVDNTKGDSFDLYYG 256 (335)
Q Consensus 183 ~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la~aL~~~~---~~~---~~~~~~gf~~~~rl~~~ia~~~~~lw~~ 256 (335)
.++++|+.+|++++++++++||+++|++||+||+++.+|+... .+. ..+.++||++++|+ ++++|+||+|
T Consensus 151 ~v~~l~~~~G~~~~~~~~~~hD~~~a~vs~lph~~a~~l~~~~~~~~~~~~~~~~~~~gfrd~tri----a~~~p~l~~~ 226 (275)
T PRK08507 151 RAKEIFSGLGMRIVYMDAKEHDLHAAYISHLPHIISFALANTVLKEEDERNIFDLAGGGFRSMSRL----AKSSPAMWSD 226 (275)
T ss_pred HHHHHHHHhCCEEEEeCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCChHHHHhhcccchhhhhhc----ccCCHHHHHH
Confidence 9999999999999999999999999999999999999886542 221 26789999999998 8999999999
Q ss_pred HHhhCHhH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCc
Q 044593 257 LFMYNKNS-LEQLQRLEMAFESIKQQLFGQMFRVYRKELFGSA 298 (335)
Q Consensus 257 I~~~N~~~-~~~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~ 298 (335)
||..|+++ ++.|++|++.|+++++.|+++|.+.+.+ +|.++
T Consensus 227 i~~~N~~~~~~~l~~~~~~l~~~~~~l~~~d~~~~~~-~~~~~ 268 (275)
T PRK08507 227 IFKQNKENVLEAIDEFIKELEQFKQLIENEDWEELEE-WMEQA 268 (275)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH-HHHHH
Confidence 99999987 5999999999999999999999998877 55544
No 11
>PRK08655 prephenate dehydrogenase; Provisional
Probab=100.00 E-value=1.8e-42 Score=340.69 Aligned_cols=259 Identities=26% Similarity=0.392 Sum_probs=224.0
Q ss_pred CeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcH-HHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhhcc
Q 044593 32 LKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSP-AVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSIP 109 (335)
Q Consensus 32 ~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~-~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~l~ 109 (335)
|||+||| +|.||+++|..|.+.|++|++|||+++.. +.+.+.|+....+..+.+ .++|+||+|+|+..+.+++.++.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~-~~aDvVIlavp~~~~~~vl~~l~ 79 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAA-KDADIVIISVPINVTEDVIKEVA 79 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHh-ccCCEEEEecCHHHHHHHHHHHH
Confidence 6899997 89999999999999999999999998663 566777887666777776 78999999999999999999985
Q ss_pred ccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHHHHHH
Q 044593 110 FQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFA 189 (335)
Q Consensus 110 ~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l~~ 189 (335)
+.++++++|+|++|+|..+.+.+.+.++.+..|+++|||+||... .+.|..++++| .+..+.+.++.++++|+
T Consensus 80 -~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~~~V~~HPmaGp~~~--~~~g~~~il~p----~~~~~~~~~~~v~~ll~ 152 (437)
T PRK08655 80 -PHVKEGSLLMDVTSVKERPVEAMEEYAPEGVEILPTHPMFGPRTP--SLKGQVVILTP----TEKRSNPWFDKVKNFLE 152 (437)
T ss_pred -hhCCCCCEEEEcccccHHHHHHHHHhcCCCCEEEEcCCCCCCCCc--ccCCCEEEEec----CCCCCHHHHHHHHHHHH
Confidence 678999999999999999999999888877889999999998753 46777777754 33334567889999999
Q ss_pred hcCCEEEEeChHHHHHHHHHhhhhHHHHHHHHHHc----CCC---CCCCCCcchhhHHHHHHHhhCCChHhHHHHHhhCH
Q 044593 190 KEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERF----GVE---SSPINTKGYETLLDLVDNTKGDSFDLYYGLFMYNK 262 (335)
Q Consensus 190 ~~G~~v~~~~~~eHD~~~A~~s~lph~la~aL~~~----~~~---~~~~~~~gf~~~~rl~~~ia~~~~~lw~~I~~~N~ 262 (335)
.+|++++++++++||+++|++||+||+++.+++.. +.+ ...+++++|+++..++.||+++||+||++||..||
T Consensus 153 ~~G~~v~~~~~e~HD~~~a~vs~lph~~a~al~~~l~~~g~~~~~~~~~a~~~frd~~~~~tRIa~~~p~lw~dI~~~N~ 232 (437)
T PRK08655 153 KEGARVIVTSPEEHDRIMSVVQGLTHFAYISIASTLKRLGVDIKESRKFASPIYELMIDIIGRILGQNPYLYASIQMNNP 232 (437)
T ss_pred HcCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhcChhhHHHHHHHHHHhcCCHHHHHHHHHhCH
Confidence 99999999999999999999999999988777543 333 23588999999988778889999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCch
Q 044593 263 NSLEQLQRLEMAFESIKQQLFGQMFRVYRKELFGSAE 299 (335)
Q Consensus 263 ~~~~~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~ 299 (335)
+..+++++|++.|+++++.++++|++.+.+ +|.++.
T Consensus 233 ~~~~~l~~~~~~l~~l~~~l~~~D~~~l~~-~~~~a~ 268 (437)
T PRK08655 233 QIPEIHETFIKECEELSELVKNGDREEFVE-RMKEAA 268 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHH
Confidence 768999999999999999999999999888 565554
No 12
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=100.00 E-value=1.3e-42 Score=327.87 Aligned_cols=260 Identities=20% Similarity=0.266 Sum_probs=218.6
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCC--eEEEEcCCCCcHHHHHhCCCc--eecChhhHhhcCCCEEEEecCchhHHH
Q 044593 28 KSTSLKIAVIGFGNFGQFLAKAFARHHH--TLLVHSRSDHSPAVRQQLNAP--FFADLNDLCELHPDVVLLSTSILSTQS 103 (335)
Q Consensus 28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~--~V~~~dr~~~~~~~a~~~g~~--~~~~~~~~~~~~aDvVIlavp~~~~~~ 103 (335)
.+..+||+|||+|.||++++..|.+.|+ +|++||++++..+.+.+.|+. ...+..+.+ .++|+||+|+|.....+
T Consensus 3 ~~~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~-~~aDvViiavp~~~~~~ 81 (307)
T PRK07502 3 APLFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAV-KGADLVILCVPVGASGA 81 (307)
T ss_pred ccCCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHh-cCCCEEEECCCHHHHHH
Confidence 3456899999999999999999999985 899999998877777777763 334566666 78999999999999888
Q ss_pred HHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCc-c-----cccCCCcceecccccCCChhH
Q 044593 104 VLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESA-K-----SSWENLPFMYDKVRIGNDEER 177 (335)
Q Consensus 104 vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~-~-----~~~~g~~~i~~~~~~~~~~~~ 177 (335)
+++++. +.++++++|+|++|+|..+.+.+.+.++.+.+|+++|||+|++.. . ..|.|.++++++ .+..+
T Consensus 82 v~~~l~-~~l~~~~iv~dvgs~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~----~~~~~ 156 (307)
T PRK07502 82 VAAEIA-PHLKPGAIVTDVGSVKASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTP----PEGTD 156 (307)
T ss_pred HHHHHH-hhCCCCCEEEeCccchHHHHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeC----CCCCC
Confidence 998885 678899999999999988888887777766789999999998752 1 345666666653 22334
Q ss_pred HHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHhhhhHHHHHHHHHHcC--CCC------CCCCCcchhhHHHHHHHhhCC
Q 044593 178 IKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERFG--VES------SPINTKGYETLLDLVDNTKGD 249 (335)
Q Consensus 178 ~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la~aL~~~~--~~~------~~~~~~gf~~~~rl~~~ia~~ 249 (335)
.+.++.+.++|+.+|++++++++++||+++|++||+||+++++|+... .+. ..++++||||++|+ +++
T Consensus 157 ~~~~~~~~~l~~~lG~~~~~~~~~~hD~~~A~~s~lph~~a~~l~~~~~~~~~~~~~~~~~~~~~gfrd~tRi----a~~ 232 (307)
T PRK07502 157 PAAVARLTAFWRALGARVEEMDPEHHDLVLAITSHLPHLIAYTIVGTADDLERVTESEVIKYSASGFRDFTRI----AAS 232 (307)
T ss_pred HHHHHHHHHHHHHcCCEEEEcCHHHHhHHHHHHhhHHHHHHHHHHHHHhhhcccchHHHHHhccccccccccc----ccC
Confidence 567889999999999999999999999999999999999999886432 111 15889999999998 899
Q ss_pred ChHhHHHHHhhCHhH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCc
Q 044593 250 SFDLYYGLFMYNKNS-LEQLQRLEMAFESIKQQLFGQMFRVYRKELFGSA 298 (335)
Q Consensus 250 ~~~lw~~I~~~N~~~-~~~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~ 298 (335)
+|+||+|||..|+++ ++.|++|++.|+++++.|+++|.+.+.+ +|.++
T Consensus 233 ~~~~w~~i~~~N~~~~~~~l~~~~~~l~~~~~~l~~~d~~~l~~-~~~~~ 281 (307)
T PRK07502 233 DPTMWRDVFLHNKDAVLEMLGRFTEDLAALQRAIRWGDGDALFD-LFTRT 281 (307)
T ss_pred ChHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH-HHHHH
Confidence 999999999999988 5999999999999999999999999888 66655
No 13
>PRK06545 prephenate dehydrogenase; Validated
Probab=100.00 E-value=4.7e-42 Score=330.56 Aligned_cols=256 Identities=18% Similarity=0.278 Sum_probs=215.3
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhC--CCce--ecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593 32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQL--NAPF--FADLNDLCELHPDVVLLSTSILSTQSVLKS 107 (335)
Q Consensus 32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~--g~~~--~~~~~~~~~~~aDvVIlavp~~~~~~vl~~ 107 (335)
++|+|||+|+||+++|.+|+++|++|.+|+++++........ |+.. .+++.+++ .+||+||+|+|+..+.+++++
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~aDlVilavP~~~~~~vl~~ 79 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAA-AEADLIVLAVPVDATAALLAE 79 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHh-cCCCEEEEeCCHHHHHHHHHH
Confidence 479999999999999999999999999999888765444333 4322 34556666 799999999999999999999
Q ss_pred cccc-ccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCc------ccccCCCcceecccccCCChhHHHH
Q 044593 108 IPFQ-RLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESA------KSSWENLPFMYDKVRIGNDEERIKR 180 (335)
Q Consensus 108 l~~~-~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~------~~~~~g~~~i~~~~~~~~~~~~~~~ 180 (335)
+. + .++++++|+|++|+|..+.+.+++.++...+|+++|||+|++.+ ...|.|.++++++ .+..+.+.
T Consensus 80 l~-~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~----~~~~~~~~ 154 (359)
T PRK06545 80 LA-DLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTP----DDHTDPDA 154 (359)
T ss_pred Hh-hcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEec----CCCCCHHH
Confidence 85 4 47899999999999999999888876666789999999999863 2456777777764 34445677
Q ss_pred HHHHHHHHHhcCCEEEEeChHHHHHHHHHhhhhHHHHHHHHHHcCC-C---CCCCCCcchhhHHHHHHHhhCCChHhHHH
Q 044593 181 VDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERFGV-E---SSPINTKGYETLLDLVDNTKGDSFDLYYG 256 (335)
Q Consensus 181 ~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la~aL~~~~~-~---~~~~~~~gf~~~~rl~~~ia~~~~~lw~~ 256 (335)
++.++++|+.+|++++++++++||+++|++||+||+++.+|+.... + ...++++||++++|+ ++++|.||.+
T Consensus 155 ~~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~ia~al~~~~~~~~~~~~~la~~gfrd~tRi----a~~~p~~w~d 230 (359)
T PRK06545 155 VAELKDLLSGTGAKFVVLDAEEHDRAVALVSHLPHILASSLAARLAGEHPLALRLAAGGFRDITRI----ASSDPGMWRD 230 (359)
T ss_pred HHHHHHHHHHcCCEEEECCHHHHhHHHhHhccHHHHHHHHHHHhhccCchHHHhhhcccccCCccc----cCCCHHHHHH
Confidence 8899999999999999999999999999999999999998864321 1 235789999999998 7899999999
Q ss_pred HHhhCHhH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCc
Q 044593 257 LFMYNKNS-LEQLQRLEMAFESIKQQLFGQMFRVYRKELFGSA 298 (335)
Q Consensus 257 I~~~N~~~-~~~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~ 298 (335)
|+.+|+.+ ++.|++|++.|+++++.|+++|.+.+++ +|..+
T Consensus 231 i~~~N~~~~~~~l~~~~~~l~~~~~~l~~~d~~~l~~-~~~~~ 272 (359)
T PRK06545 231 ILESNAEALLDALDEWIEDLDRARDALESGDAEAIAE-LFDAG 272 (359)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH-HHHHH
Confidence 99999987 6999999999999999999999998887 66655
No 14
>PRK06444 prephenate dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-38 Score=280.99 Aligned_cols=194 Identities=21% Similarity=0.360 Sum_probs=163.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhhccc
Q 044593 32 LKIAVIGF-GNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSIPF 110 (335)
Q Consensus 32 ~kI~IIG~-G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~l~~ 110 (335)
|||+|||. |.||.+++..|.++|+.|+ + .+||+||+|+|...+.++++++.
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~--------------------------~-~~~DlVilavPv~~~~~~i~~~~- 52 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY--------------------------I-KKADHAFLSVPIDAALNYIESYD- 52 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE--------------------------E-CCCCEEEEeCCHHHHHHHHHHhC-
Confidence 69999996 9999999999999999985 2 57999999999999999998873
Q ss_pred cccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHHHHHHh
Q 044593 111 QRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAK 190 (335)
Q Consensus 111 ~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l~~~ 190 (335)
.+|+|++|+|..+.+. ..+||++||||||+.+..++. ..++++ .+..+++.++.++++|+
T Consensus 53 ------~~v~Dv~SvK~~i~~~-------~~~~vg~HPMfGp~~a~~~lf-~~~iv~-----~~~~~~~~~~~~~~l~~- 112 (197)
T PRK06444 53 ------NNFVEISSVKWPFKKY-------SGKIVSIHPLFGPMSYNDGVH-RTVIFI-----NDISRDNYLNEINEMFR- 112 (197)
T ss_pred ------CeEEeccccCHHHHHh-------cCCEEecCCCCCCCcCccccc-ceEEEE-----CCCCCHHHHHHHHHHHc-
Confidence 2799999999965432 236999999999887542221 244443 22334556788999998
Q ss_pred cCCEEEEeChHHHHHHHHHhhhhHHHHHHHHHHcCCCCCCCCCcchhhHHHHHHHhhCCChHhHHHHHhhCHhHHHHHHH
Q 044593 191 EGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERFGVESSPINTKGYETLLDLVDNTKGDSFDLYYGLFMYNKNSLEQLQR 270 (335)
Q Consensus 191 ~G~~v~~~~~~eHD~~~A~~s~lph~la~aL~~~~~~~~~~~~~gf~~~~rl~~~ia~~~~~lw~~I~~~N~~~~~~l~~ 270 (335)
|++++.+++++||+++|++|||||++|.+|... . .++++++||+++|+++++.++||+||+|||.+||++ +.+++
T Consensus 113 -G~~~~~~t~eeHD~~~A~ishLpH~ia~al~~~--~-~~~~t~~fr~l~ria~~~~~~~p~lw~dI~~~N~~a-~~~~~ 187 (197)
T PRK06444 113 -GYHFVEMTADEHDLLMSEIMVKPYIISMILKDI--K-SDIKTGSFDKLLEVSEIKEKENWEVFNDTIIYNPYT-NVIND 187 (197)
T ss_pred -CCEEEEeCHHHHHHHHHHHHHHHHHHHHHHccC--C-CCCCCccHHHHHHHHHHhccCCHHHHHHHHHHCchH-HHHHH
Confidence 899999999999999999999999999998773 2 578999999999999888899999999999999999 88999
Q ss_pred HHHHHHHH
Q 044593 271 LEMAFESI 278 (335)
Q Consensus 271 ~~~~l~~l 278 (335)
|.+.+++.
T Consensus 188 ~~~~~~~~ 195 (197)
T PRK06444 188 LIERLNKV 195 (197)
T ss_pred HHHHHhhc
Confidence 98888764
No 15
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=100.00 E-value=3.1e-35 Score=307.49 Aligned_cols=257 Identities=18% Similarity=0.231 Sum_probs=216.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcC--CeEEEEcCCCCcHHHHHhCCCc--eecChhhHhhcCCCEEEEecCchhHHHHHh
Q 044593 31 SLKIAVIGFGNFGQFLAKAFARHH--HTLLVHSRSDHSPAVRQQLNAP--FFADLNDLCELHPDVVLLSTSILSTQSVLK 106 (335)
Q Consensus 31 ~~kI~IIG~G~mG~siA~~L~~~G--~~V~~~dr~~~~~~~a~~~g~~--~~~~~~~~~~~~aDvVIlavp~~~~~~vl~ 106 (335)
.+||+|||+|+||.+++..|.+.| ++|++||++++..+.+.+.|+. ...+..+++ .++|+||+|+|+..+.++++
T Consensus 3 ~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~-~~aDvVilavp~~~~~~vl~ 81 (735)
T PRK14806 3 FGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAV-SGADVIVLAVPVLAMEKVLA 81 (735)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHh-cCCCEEEECCCHHHHHHHHH
Confidence 478999999999999999999998 4899999999887777788875 344566666 78999999999999999999
Q ss_pred hccccccCCccEEEEcCCCCchHHHHHHhhCCC-CCceEeccccCCCCCc------ccccCCCcceecccccCCChhHHH
Q 044593 107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQ-DFDILCTHPMFGPESA------KSSWENLPFMYDKVRIGNDEERIK 179 (335)
Q Consensus 107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~-~~~~v~~HPmaG~~~~------~~~~~g~~~i~~~~~~~~~~~~~~ 179 (335)
++. +.++++++|+|++|+|..+.+.+++.++. ..+|++.|||+|++.. +..|.+.++++++ ....+.+
T Consensus 82 ~l~-~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~----~~~~~~~ 156 (735)
T PRK14806 82 DLK-PLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTP----LAETDPA 156 (735)
T ss_pred HHH-HhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEEC----CCCCCHH
Confidence 985 67888999999999999888988887753 4689999999999862 2345666666653 3333456
Q ss_pred HHHHHHHHHHhcCCEEEEeChHHHHHHHHHhhhhHHHHHHHHHHcC----CC--CCCCCCcchhhHHHHHHHhhCCChHh
Q 044593 180 RVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERFG----VE--SSPINTKGYETLLDLVDNTKGDSFDL 253 (335)
Q Consensus 180 ~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la~aL~~~~----~~--~~~~~~~gf~~~~rl~~~ia~~~~~l 253 (335)
..+.++++|+.+|++++++++++||+++|++||+||+++++|++.- .. ...+++++|++++|+ ++++|+|
T Consensus 157 ~~~~~~~l~~~~G~~~~~~~~~~hD~~~a~~~~~ph~~~~~l~~~l~~~~~~~~~~~~a~~~f~~~tRi----a~~~p~~ 232 (735)
T PRK14806 157 ALARVDRLWRAVGADVLHMDVAHHDEVLAATSHLPHLLAFSLVDQLANREDNLDIFRYAAGGFRDFTRI----AASDPVM 232 (735)
T ss_pred HHHHHHHHHHHcCCEEEEcCHHHHhHHHHHhcchHHHHHHHHHHHHhhcCChhHHHhhhccchhccccc----ccCCHHH
Confidence 7788999999999999999999999999999999998887775432 11 126788999999998 7999999
Q ss_pred HHHHHhhCHhH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCc
Q 044593 254 YYGLFMYNKNS-LEQLQRLEMAFESIKQQLFGQMFRVYRKELFGSA 298 (335)
Q Consensus 254 w~~I~~~N~~~-~~~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~ 298 (335)
|.||+.+|+.+ ++.|+.|++.|+.+++.+.++|++.+++ +|.++
T Consensus 233 ~~di~~~n~~~~~~~l~~~~~~l~~~~~~l~~~d~~~~~~-~~~~~ 277 (735)
T PRK14806 233 WHDIFLANKEAVLRALDHFRDDLDALRAAIEAGDGHALLG-VFTRA 277 (735)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH-HHHHH
Confidence 99999999987 5999999999999999999999999888 66655
No 16
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=100.00 E-value=1.9e-35 Score=305.41 Aligned_cols=198 Identities=16% Similarity=0.194 Sum_probs=174.4
Q ss_pred EEEecCchhHHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCC-CceEeccccCCCCCc------ccccCCCcc
Q 044593 92 VLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQD-FDILCTHPMFGPESA------KSSWENLPF 164 (335)
Q Consensus 92 VIlavp~~~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~-~~~v~~HPmaG~~~~------~~~~~g~~~ 164 (335)
||+|+|+..+.++++++. +.++++++|+|++|+|..+++.+.+.++.. .+||++|||+|+|.+ ++.|+|.++
T Consensus 1 vila~Pv~~~~~~~~~~~-~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~~~ 79 (673)
T PRK11861 1 VLLAAPVAQTGPLLARIA-PFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGRNV 79 (673)
T ss_pred CEEEcCHHHHHHHHHHHh-hhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCCeE
Confidence 689999999999999996 789999999999999999999998887643 469999999999984 356889999
Q ss_pred eecccccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHhhhhHHHHHHHHHHcCC---C-C--CCCCCcchhh
Q 044593 165 MYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERFGV---E-S--SPINTKGYET 238 (335)
Q Consensus 165 i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la~aL~~~~~---~-~--~~~~~~gf~~ 238 (335)
++|| .+..+.+.+++++++|+.+|++++.+++++||+++|++|||||++|++|++... + . ..++++||||
T Consensus 80 il~p----~~~~~~~~~~~~~~l~~~~Ga~~~~~~~~~HD~~~A~iShlpH~~a~~l~~~~~~~~~~~~~~~~a~~gfrd 155 (673)
T PRK11861 80 VLCA----LPENAPDALARVEAMWRAARADVRAMSAEQHDRVFAAVSHLPHVLSFALVEQILGESDAELKFSYAAGGFRD 155 (673)
T ss_pred EEec----CCCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHHHHHhhHHHHHHHHHHHHHhhccChhHHHHhcccchhc
Confidence 9975 333456678999999999999999999999999999999999999999976421 1 1 2588999999
Q ss_pred HHHHHHHhhCCChHhHHHHHhhCHhH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCch
Q 044593 239 LLDLVDNTKGDSFDLYYGLFMYNKNS-LEQLQRLEMAFESIKQQLFGQMFRVYRKELFGSAE 299 (335)
Q Consensus 239 ~~rl~~~ia~~~~~lw~~I~~~N~~~-~~~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~ 299 (335)
+||+ |++||+||+|||.+|+++ ++.|++|++.|+++++.|+++|++.+.+ +|.++.
T Consensus 156 ~tRi----a~~~p~lw~di~~~N~~~i~~~l~~~~~~l~~~~~~l~~~d~~~l~~-~~~~~~ 212 (673)
T PRK11861 156 FTRI----AASSPEMWRDVCLANRAALLDELDAYTAVLARLRAAIDAGDGAALEA-VFARSR 212 (673)
T ss_pred cccc----ccCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH-HHHHHH
Confidence 9998 899999999999999998 6999999999999999999999999877 776663
No 17
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.85 E-value=1.4e-19 Score=167.29 Aligned_cols=171 Identities=15% Similarity=0.120 Sum_probs=132.3
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCC----eEEEE-cCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHh
Q 044593 32 LKIAVIGFGNFGQFLAKAFARHHH----TLLVH-SRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLK 106 (335)
Q Consensus 32 ~kI~IIG~G~mG~siA~~L~~~G~----~V~~~-dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~ 106 (335)
|||+|||+|+||++++..|.++|+ +|++| +|+++..+.+.+.|+....++.+++ +++|+||+|+|+..+.+++.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~-~~aDvVil~v~~~~~~~vl~ 79 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVV-KSSDVIILAVKPQVVKDVLT 79 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHH-hcCCEEEEEECcHHHHHHHH
Confidence 789999999999999999999998 89999 9998777767778988777887777 78999999999999999999
Q ss_pred hccccccCCccEEEEc-CCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHH
Q 044593 107 SIPFQRLKRSTLFVDV-LSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFL 185 (335)
Q Consensus 107 ~l~~~~l~~~~iVvd~-~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~ 185 (335)
++. +.++++++|+++ ++++ .+.+.+.++.. +++..+|..+...+ .+...++ .....+++..+.++
T Consensus 80 ~l~-~~~~~~~~iIs~~~g~~---~~~l~~~~~~~-~vvr~mP~~~~~~~----~~~~~l~-----~~~~~~~~~~~~v~ 145 (266)
T PLN02688 80 ELR-PLLSKDKLLVSVAAGIT---LADLQEWAGGR-RVVRVMPNTPCLVG----EAASVMS-----LGPAATADDRDLVA 145 (266)
T ss_pred HHH-hhcCCCCEEEEecCCCc---HHHHHHHcCCC-CEEEECCCcHHHHh----CceEEEE-----eCCCCCHHHHHHHH
Confidence 884 567788877766 4443 35555555543 67777776665543 2222222 12223456778999
Q ss_pred HHHHhcCCEEEEeChHHHHHHHHHhhhhHHHHH
Q 044593 186 DVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMG 218 (335)
Q Consensus 186 ~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la 218 (335)
++|+.+|. ++++++++||.+++.+...|.+++
T Consensus 146 ~l~~~~G~-~~~~~e~~~d~~~~~~g~g~a~~~ 177 (266)
T PLN02688 146 TLFGAVGK-IWVVDEKLLDAVTGLSGSGPAYIF 177 (266)
T ss_pred HHHHhCCC-EEEeCHHHcchhHhhhcCHHHHHH
Confidence 99999998 999999999999998887777654
No 18
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.85 E-value=9.5e-20 Score=168.59 Aligned_cols=173 Identities=15% Similarity=0.092 Sum_probs=130.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcC---CeEEEEcCCCCcHHHHHh-CCCceecChhhHhhcCCCEEEEecCchhHHHHHh
Q 044593 31 SLKIAVIGFGNFGQFLAKAFARHH---HTLLVHSRSDHSPAVRQQ-LNAPFFADLNDLCELHPDVVLLSTSILSTQSVLK 106 (335)
Q Consensus 31 ~~kI~IIG~G~mG~siA~~L~~~G---~~V~~~dr~~~~~~~a~~-~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~ 106 (335)
+|||+|||+|.||++++..|.++| ++|.+|+|+++..+.+.+ .|+....+..+++ .++|+||+|+|+..+.++++
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~-~~advVil~v~~~~~~~v~~ 80 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAA-QEADVVVLAVKPQVMEEVLS 80 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHH-hcCCEEEEEcCHHHHHHHHH
Confidence 679999999999999999999998 789999999876655554 4776666777776 78999999999999999999
Q ss_pred hccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHHH
Q 044593 107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLD 186 (335)
Q Consensus 107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~ 186 (335)
++. +.+ +..+|..+++++ .+.+++.++.+.+++..||......+ .+.. .++ ..+..+++..+.+++
T Consensus 81 ~l~-~~~-~~~vvs~~~gi~---~~~l~~~~~~~~~iv~~~P~~p~~~~----~~~~-~i~----~~~~~~~~~~~~v~~ 146 (267)
T PRK11880 81 ELK-GQL-DKLVVSIAAGVT---LARLERLLGADLPVVRAMPNTPALVG----AGMT-ALT----ANALVSAEDRELVEN 146 (267)
T ss_pred HHH-hhc-CCEEEEecCCCC---HHHHHHhcCCCCcEEEecCCchHHHc----CceE-EEe----cCCCCCHHHHHHHHH
Confidence 985 455 334455555554 35666777655678899996644332 2322 222 233345677889999
Q ss_pred HHHhcCCEEEEeChHHHHHHHHHhhhhHHHHH
Q 044593 187 VFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMG 218 (335)
Q Consensus 187 l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la 218 (335)
+|+.+|..++..++++||.+++++++.|.++.
T Consensus 147 l~~~lG~~~~~~~e~~~d~~~a~~~~~pa~~~ 178 (267)
T PRK11880 147 LLSAFGKVVWVDDEKQMDAVTAVSGSGPAYVF 178 (267)
T ss_pred HHHhCCeEEEECChHhcchHHHHhcChHHHHH
Confidence 99999975555569999999999999887653
No 19
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.83 E-value=3.4e-19 Score=165.48 Aligned_cols=175 Identities=14% Similarity=0.119 Sum_probs=139.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCC----eEEEEcCCCCcHHHHH-hCCCceecChhhHhhcCCCEEEEecCchhHHHHH
Q 044593 31 SLKIAVIGFGNFGQFLAKAFARHHH----TLLVHSRSDHSPAVRQ-QLNAPFFADLNDLCELHPDVVLLSTSILSTQSVL 105 (335)
Q Consensus 31 ~~kI~IIG~G~mG~siA~~L~~~G~----~V~~~dr~~~~~~~a~-~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl 105 (335)
.+||+|||+|+||++++..|.++|+ +|+++||+++..+.+. +.|+....+..+++ .+||+||+|+|++.+.+++
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~-~~aDiIiLavkP~~~~~vl 80 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVA-NSADILILSIKPDLYSSVI 80 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHH-hhCCEEEEEeChHHHHHHH
Confidence 4589999999999999999999885 6999999987766554 47876667777777 7999999999999999999
Q ss_pred hhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHH
Q 044593 106 KSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFL 185 (335)
Q Consensus 106 ~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~ 185 (335)
+++. +.++++++|+|+... ..++.+++.++...+++...|......+ .|...+.. ++..+.+..+.++
T Consensus 81 ~~l~-~~~~~~~lvISi~AG--i~i~~l~~~l~~~~~vvR~MPN~~~~vg----~g~t~~~~-----~~~~~~~~~~~v~ 148 (272)
T PRK12491 81 NQIK-DQIKNDVIVVTIAAG--KSIKSTENEFDRKLKVIRVMPNTPVLVG----EGMSALCF-----NEMVTEKDIKEVL 148 (272)
T ss_pred HHHH-HhhcCCcEEEEeCCC--CcHHHHHHhcCCCCcEEEECCChHHHHc----CceEEEEe-----CCCCCHHHHHHHH
Confidence 9985 667888999998655 4568888888755578899998877765 34433331 2333445668889
Q ss_pred HHHHhcCCEEEEeChHHHHHHHHHhhhhHHHHHH
Q 044593 186 DVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGR 219 (335)
Q Consensus 186 ~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la~ 219 (335)
++|+.+|. ++++++++-|.+.|++...|-.+..
T Consensus 149 ~lf~~~G~-~~~~~E~~~d~~talsgsgPAf~~~ 181 (272)
T PRK12491 149 NIFNIFGQ-TEVVNEKLMDVVTSISGSSPAYVYM 181 (272)
T ss_pred HHHHcCCC-EEEEcHHHhhhHHHhccCcHHHHHH
Confidence 99999995 6888999999999999999886654
No 20
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.82 E-value=2e-18 Score=159.60 Aligned_cols=172 Identities=18% Similarity=0.220 Sum_probs=141.0
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCc-HHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHh---
Q 044593 32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHS-PAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLK--- 106 (335)
Q Consensus 32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~-~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~--- 106 (335)
+||++||+|.||..+|..|.++||+|++|||+++. .+.+...|.....++.+++ +++|+||+|+|.+. +.+++.
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa-~~aDvVitmv~~~~~V~~V~~g~~ 79 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAA-AEADVVITMLPDDAAVRAVLFGEN 79 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHH-HhCCEEEEecCCHHHHHHHHhCcc
Confidence 58999999999999999999999999999999977 7778888999888888888 89999999999886 677774
Q ss_pred hccccccCCccEEEEcCCCCchHHHHHHhhCC-CCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHH
Q 044593 107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLP-QDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFL 185 (335)
Q Consensus 107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~-~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~ 185 (335)
.+. ..+++|++++|++|+.......+.+.+. .+..|+-. |+.|...+. .+|...+++ +.+ ++.+++++
T Consensus 80 g~~-~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDA-PVsGg~~~A--~~GtLtimv----GG~---~~~f~r~~ 148 (286)
T COG2084 80 GLL-EGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDA-PVSGGVPGA--AAGTLTIMV----GGD---AEAFERAK 148 (286)
T ss_pred chh-hcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEec-CccCCchhh--hhCceEEEe----CCC---HHHHHHHH
Confidence 343 5678999999999998777666665553 45678874 999988653 256655553 554 46889999
Q ss_pred HHHHhcCCEEEEeChHHHHHHHHHhhhhHH
Q 044593 186 DVFAKEGCRMVEMSCFDHDKYAAGSQFVTH 215 (335)
Q Consensus 186 ~l~~~~G~~v~~~~~~eHD~~~A~~s~lph 215 (335)
++|+.+|.+++++.+.--...+.+++++--
T Consensus 149 pvl~~~g~~i~~~G~~G~G~~~Kl~nn~l~ 178 (286)
T COG2084 149 PVLEAMGKNIVHVGPVGAGQAAKLANNILL 178 (286)
T ss_pred HHHHHhcCceEEECCCCchHHHHHHHHHHH
Confidence 999999999999999877778888776644
No 21
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.82 E-value=2.1e-18 Score=160.89 Aligned_cols=175 Identities=12% Similarity=0.151 Sum_probs=132.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcC----CeEEEEcCCCC-cHH-HHHhCCCceecChhhHhhcCCCEEEEecCchhHH
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHH----HTLLVHSRSDH-SPA-VRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQ 102 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G----~~V~~~dr~~~-~~~-~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~ 102 (335)
|..|||+|||+|+||.+++..|.++| ++|++++|+++ ..+ .+.+.|+....++.+++ .++|+||+|+|++.+.
T Consensus 1 ~~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~-~~aDvVilav~p~~~~ 79 (279)
T PRK07679 1 MSIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELL-TDANILFLAMKPKDVA 79 (279)
T ss_pred CCCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHH-hcCCEEEEEeCHHHHH
Confidence 45689999999999999999999988 78999999864 333 33456877777777777 7899999999999999
Q ss_pred HHHhhccccccCCccEEEEc-CCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHH
Q 044593 103 SVLKSIPFQRLKRSTLFVDV-LSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRV 181 (335)
Q Consensus 103 ~vl~~l~~~~l~~~~iVvd~-~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~ 181 (335)
+++.++. +.++++++|+++ ++++. +.+++.++.+..+++.||+.....+ .+.. +++ +++..+.+..
T Consensus 80 ~vl~~l~-~~~~~~~liIs~~aGi~~---~~l~~~~~~~~~v~r~mPn~~~~~~----~~~t-~~~----~~~~~~~~~~ 146 (279)
T PRK07679 80 EALIPFK-EYIHNNQLIISLLAGVST---HSIRNLLQKDVPIIRAMPNTSAAIL----KSAT-AIS----PSKHATAEHI 146 (279)
T ss_pred HHHHHHH-hhcCCCCEEEEECCCCCH---HHHHHHcCCCCeEEEECCCHHHHHh----cccE-EEe----eCCCCCHHHH
Confidence 9999985 567888999997 66543 5566666655679999998654432 3333 332 2333445677
Q ss_pred HHHHHHHHhcCCEEEEeChHHHHHHHHHhhhhHHHHH
Q 044593 182 DKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMG 218 (335)
Q Consensus 182 ~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la 218 (335)
+.++++|+.+|. ++++++++.|.+++.+...|..++
T Consensus 147 ~~v~~l~~~~G~-~~~v~e~~~~~~~a~~Gsgpa~~~ 182 (279)
T PRK07679 147 QTAKALFETIGL-VSVVEEEDMHAVTALSGSGPAYIY 182 (279)
T ss_pred HHHHHHHHhCCc-EEEeCHHHhhhHHHhhcCHHHHHH
Confidence 899999999996 678888887877887776666443
No 22
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.80 E-value=9e-20 Score=156.86 Aligned_cols=157 Identities=18% Similarity=0.248 Sum_probs=119.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCch-hHHHHHhh--
Q 044593 31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSIL-STQSVLKS-- 107 (335)
Q Consensus 31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~-~~~~vl~~-- 107 (335)
|+||+|||+|.||..+|+.|.++|++|++|||+++..+...+.|+....++.+++ +++|+||+|+|.. ++.+++..
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~-~~~dvvi~~v~~~~~v~~v~~~~~ 79 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAA-EQADVVILCVPDDDAVEAVLFGEN 79 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHH-HHBSEEEE-SSSHHHHHHHHHCTT
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHh-hcccceEeecccchhhhhhhhhhH
Confidence 5799999999999999999999999999999999888778888998899999998 8899999999985 57889888
Q ss_pred ccccccCCccEEEEcCCCCchHHHHHHhhCC-CCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHHH
Q 044593 108 IPFQRLKRSTLFVDVLSVKEFPRNLFLKYLP-QDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLD 186 (335)
Q Consensus 108 l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~-~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~ 186 (335)
+. +.+++|++|+|++++.......+.+.+. .+.+|+.+ |+.|..... .+|...++. +++ ++.++++++
T Consensus 80 i~-~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vda-pV~Gg~~~a--~~g~l~~~~----gG~---~~~~~~~~~ 148 (163)
T PF03446_consen 80 IL-AGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDA-PVSGGPPGA--EEGTLTIMV----GGD---EEAFERVRP 148 (163)
T ss_dssp HG-GGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEE-EEESHHHHH--HHTTEEEEE----ES----HHHHHHHHH
T ss_pred Hh-hccccceEEEecCCcchhhhhhhhhhhhhccceeeee-eeecccccc--cccceEEEc----cCC---HHHHHHHHH
Confidence 64 6789999999999987766666766653 56788875 898876432 245534442 343 467889999
Q ss_pred HHHhcCCEEE-EeC
Q 044593 187 VFAKEGCRMV-EMS 199 (335)
Q Consensus 187 l~~~~G~~v~-~~~ 199 (335)
+|+.+|.+++ ++.
T Consensus 149 ~l~~~~~~v~~~~G 162 (163)
T PF03446_consen 149 LLEAMGKNVYHYVG 162 (163)
T ss_dssp HHHHHEEEEEEE-E
T ss_pred HHHHHhCCceeeeC
Confidence 9999999888 434
No 23
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.79 E-value=1.3e-17 Score=156.50 Aligned_cols=171 Identities=18% Similarity=0.187 Sum_probs=133.6
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCch-hHHHHHhh---
Q 044593 32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSIL-STQSVLKS--- 107 (335)
Q Consensus 32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~-~~~~vl~~--- 107 (335)
|||+|||+|.||..++..|.++|++|++||+++. .+.+.+.|+....++.+++ +++|+||+|+|.+ .+.+++..
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g~~~~~s~~~~~-~~advVi~~v~~~~~v~~v~~~~~g 78 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLSLGAVSVETARQVT-EASDIIFIMVPDTPQVEEVLFGENG 78 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcCCeecCCHHHHH-hcCCEEEEeCCChHHHHHHHcCCcc
Confidence 5899999999999999999999999999999875 3445567887777888877 7999999999987 46777643
Q ss_pred ccccccCCccEEEEcCCCCchHHHHHHhhC-CCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHHH
Q 044593 108 IPFQRLKRSTLFVDVLSVKEFPRNLFLKYL-PQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLD 186 (335)
Q Consensus 108 l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l-~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~ 186 (335)
+. +.+++|++|+|++++.....+.+.+.+ ..+..|+. +|+.|...+.. .|...++. +++ ++.++++++
T Consensus 79 ~~-~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vd-aPVsGg~~~a~--~g~l~~~~----gG~---~~~~~~~~p 147 (292)
T PRK15059 79 CT-KASLKGKTIVDMSSISPIETKRFARQVNELGGDYLD-APVSGGEIGAR--EGTLSIMV----GGD---EAVFERVKP 147 (292)
T ss_pred hh-ccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEE-ecCCCCHHHHh--cCcEEEEE----cCC---HHHHHHHHH
Confidence 32 346789999999999877666565544 34677888 69999876432 46544542 444 457889999
Q ss_pred HHHhcCCEEEEeChHHHHHHHHHhhhhHH
Q 044593 187 VFAKEGCRMVEMSCFDHDKYAAGSQFVTH 215 (335)
Q Consensus 187 l~~~~G~~v~~~~~~eHD~~~A~~s~lph 215 (335)
+|+.+|.+++++.+..+...+.+++++..
T Consensus 148 ~l~~~g~~~~~~G~~G~g~~~Kl~~N~l~ 176 (292)
T PRK15059 148 LFELLGKNITLVGGNGDGQTCKVANQIIV 176 (292)
T ss_pred HHHHHcCCcEEeCCccHHHHHHHHHHHHH
Confidence 99999999999999888888888765544
No 24
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.77 E-value=2.4e-17 Score=154.49 Aligned_cols=172 Identities=18% Similarity=0.184 Sum_probs=132.6
Q ss_pred eEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHH---hhc
Q 044593 33 KIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVL---KSI 108 (335)
Q Consensus 33 kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl---~~l 108 (335)
||+|||+|.||..+|..|.+.|++|++|||+++..+.+.+.|.....+..+++ ++||+||+|+|... +..++ ..+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~-~~aDivi~~vp~~~~~~~v~~~~~~~ 79 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVT-EQADVIFTMVPDSPQVEEVAFGENGI 79 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHH-hcCCEEEEecCCHHHHHHHHcCcchH
Confidence 69999999999999999999999999999999887777778887777777777 79999999999864 45554 223
Q ss_pred cccccCCccEEEEcCCCCchHHHHHHhhCC-CCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHHHH
Q 044593 109 PFQRLKRSTLFVDVLSVKEFPRNLFLKYLP-QDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDV 187 (335)
Q Consensus 109 ~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~-~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l 187 (335)
. +.++++++|+|++++.....+.+.+.+. .+.+|+. +|++|.+.+. ..+...++. +++ ++.++.++++
T Consensus 80 ~-~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~-~pv~g~~~~a--~~g~l~i~~----gg~---~~~~~~~~~l 148 (291)
T TIGR01505 80 I-EGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLD-APVSGGEIGA--IEGTLSIMV----GGD---QAVFDRVKPL 148 (291)
T ss_pred h-hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEe-cCCCCCHHHH--hcCCEEEEe----cCC---HHHHHHHHHH
Confidence 2 3568899999999887655555655553 3567887 7999886432 245444442 443 4677889999
Q ss_pred HHhcCCEEEEeChHHHHHHHHHhhhhHHH
Q 044593 188 FAKEGCRMVEMSCFDHDKYAAGSQFVTHT 216 (335)
Q Consensus 188 ~~~~G~~v~~~~~~eHD~~~A~~s~lph~ 216 (335)
++.+|.+++++.+..+...+.+++++-..
T Consensus 149 l~~lg~~~~~~g~~g~a~~~Kl~~n~~~~ 177 (291)
T TIGR01505 149 FEALGKNIVLVGGNGDGQTCKVANQIIVA 177 (291)
T ss_pred HHHhcCCeEEeCCCCHHHHHHHHHHHHHH
Confidence 99999999999988888778887766554
No 25
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=99.77 E-value=2.1e-17 Score=154.74 Aligned_cols=169 Identities=14% Similarity=0.108 Sum_probs=136.1
Q ss_pred EEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCch-hHHHHH---hhcccc
Q 044593 36 VIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSIL-STQSVL---KSIPFQ 111 (335)
Q Consensus 36 IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~-~~~~vl---~~l~~~ 111 (335)
|||+|.||..+|..|.++|++|++|||+++..+...+.|+....++.+++ +++|+||+|+|.. .+.+++ ..+. +
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~-~~advVil~vp~~~~~~~v~~g~~~l~-~ 78 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAA-EGADRVITMLPAGQHVISVYSGDEGIL-P 78 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHH-hcCCEEEEeCCChHHHHHHHcCcchHh-h
Confidence 68999999999999999999999999999887777788887777888887 8999999999984 467777 5563 4
Q ss_pred ccCCccEEEEcCCCCchHHHHHHhhCC-CCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHHHHHHh
Q 044593 112 RLKRSTLFVDVLSVKEFPRNLFLKYLP-QDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAK 190 (335)
Q Consensus 112 ~l~~~~iVvd~~SvK~~~~~~l~~~l~-~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l~~~ 190 (335)
.++++++|+|+++++....+.+.+.+. .+..|+.+ |++|...+.. .|...++. +++ .+.+++++++|+.
T Consensus 79 ~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vda-Pv~Gg~~~a~--~g~l~~~~----gg~---~~~~~~~~~~l~~ 148 (288)
T TIGR01692 79 KVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDA-PVSGGVGGAR--AGTLTFMV----GGV---AEEFAAAEPVLGP 148 (288)
T ss_pred cCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEC-CCCCCHHHHh--hCcEEEEE----CCC---HHHHHHHHHHHHH
Confidence 678999999999998777777766553 46789886 9999875432 45544442 444 3567888999999
Q ss_pred cCCEEEEeChHHHHHHHHHhhhhHHH
Q 044593 191 EGCRMVEMSCFDHDKYAAGSQFVTHT 216 (335)
Q Consensus 191 ~G~~v~~~~~~eHD~~~A~~s~lph~ 216 (335)
+|.+++++++..+...+.+++++...
T Consensus 149 ~g~~~~~~g~~g~g~~~Kl~~n~~~~ 174 (288)
T TIGR01692 149 MGRNIVHCGDHGAGQAAKICNNMLLG 174 (288)
T ss_pred hcCCeEeeCCCCHHHHHHHHHHHHHH
Confidence 99999999988889999998877443
No 26
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.76 E-value=6.6e-17 Score=148.23 Aligned_cols=173 Identities=17% Similarity=0.188 Sum_probs=141.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcC----CeEEEEcCCCCcHH-HHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHH
Q 044593 31 SLKIAVIGFGNFGQFLAKAFARHH----HTLLVHSRSDHSPA-VRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVL 105 (335)
Q Consensus 31 ~~kI~IIG~G~mG~siA~~L~~~G----~~V~~~dr~~~~~~-~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl 105 (335)
++||+|||+|+||.+|+..|.+.| .+|++.+|+++..+ .+.++|+..+++..+++ .++|+||+||++..+.+++
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~-~~advv~LavKPq~~~~vl 79 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAV-EEADVVFLAVKPQDLEEVL 79 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHH-hhCCEEEEEeChHhHHHHH
Confidence 479999999999999999999999 48999999998774 77888887656666776 7899999999999999999
Q ss_pred hhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHH
Q 044593 106 KSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFL 185 (335)
Q Consensus 106 ~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~ 185 (335)
.++. + +.++++|+.+... ..++.++++++ +.+++...|......+ +|...+.. ++..+++..+.+.
T Consensus 80 ~~l~-~-~~~~~lvISiaAG--v~~~~l~~~l~-~~~vvR~MPNt~a~vg----~g~t~i~~-----~~~~~~~~~~~v~ 145 (266)
T COG0345 80 SKLK-P-LTKDKLVISIAAG--VSIETLERLLG-GLRVVRVMPNTPALVG----AGVTAISA-----NANVSEEDKAFVE 145 (266)
T ss_pred HHhh-c-ccCCCEEEEEeCC--CCHHHHHHHcC-CCceEEeCCChHHHHc----Ccceeeec-----CccCCHHHHHHHH
Confidence 9995 4 7788899988544 44588888888 7789999998877765 45544432 2333455667889
Q ss_pred HHHHhcCCEEEEeChHHHHHHHHHhhhhHHHHHH
Q 044593 186 DVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGR 219 (335)
Q Consensus 186 ~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la~ 219 (335)
++|+.+| ++++++++.-|.+++++...|-.+..
T Consensus 146 ~l~~~~G-~v~~v~E~~~da~TaisGSgPAyv~~ 178 (266)
T COG0345 146 ALLSAVG-KVVEVEESLMDAVTALSGSGPAYVFL 178 (266)
T ss_pred HHHHhcC-CeEEechHHhhHHHHHhcCCHHHHHH
Confidence 9999999 58999999999999999999987653
No 27
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.76 E-value=2.5e-17 Score=154.19 Aligned_cols=182 Identities=14% Similarity=0.043 Sum_probs=133.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHh-------------------------CCCceecChhhH
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ-------------------------LNAPFFADLNDL 84 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~-------------------------~g~~~~~~~~~~ 84 (335)
..+||+|||+|.||+++|..|+.+|++|++||++++..+.+.+ .++..+++..++
T Consensus 2 ~~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a 81 (287)
T PRK08293 2 DIKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEA 81 (287)
T ss_pred CccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHH
Confidence 3579999999999999999999999999999999875443321 122346677776
Q ss_pred hhcCCCEEEEecCch--hHHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCC
Q 044593 85 CELHPDVVLLSTSIL--STQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENL 162 (335)
Q Consensus 85 ~~~~aDvVIlavp~~--~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~ 162 (335)
+ ++||+||.|+|.+ ....+++++. +.++++++|++.+|++.. ..+.+.++...+|+++||...+.. ..
T Consensus 82 ~-~~aDlVieavpe~~~~k~~~~~~l~-~~~~~~~ii~sntSt~~~--~~~~~~~~~~~r~vg~Hf~~p~~~------~~ 151 (287)
T PRK08293 82 V-KDADLVIEAVPEDPEIKGDFYEELA-KVAPEKTIFATNSSTLLP--SQFAEATGRPEKFLALHFANEIWK------NN 151 (287)
T ss_pred h-cCCCEEEEeccCCHHHHHHHHHHHH-hhCCCCCEEEECcccCCH--HHHHhhcCCcccEEEEcCCCCCCc------CC
Confidence 6 7999999999976 5678888885 578889999888887632 455555555557999999665432 11
Q ss_pred cceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHhhhhHHHHHHHHHHcC
Q 044593 163 PFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERFG 225 (335)
Q Consensus 163 ~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la~aL~~~~ 225 (335)
.+.+ ++.+.++++.++.+.++++.+|.+++.+.++.|+.++.-+.+.----|..|...+
T Consensus 152 lvev----v~~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~nRi~~~~~~ea~~l~~~g 210 (287)
T PRK08293 152 TAEI----MGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQPGYILNSLLVPFLSAALALWAKG 210 (287)
T ss_pred eEEE----eCCCCCCHHHHHHHHHHHHHcCCeEEEecCCCCCHhHHHHHHHHHHHHHHHHHcC
Confidence 2222 2345566788999999999999999999999999988766544333344444444
No 28
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.75 E-value=1.2e-16 Score=150.46 Aligned_cols=170 Identities=16% Similarity=0.154 Sum_probs=132.1
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcC---CCEEEEecCch-hHHHHHhh
Q 044593 32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELH---PDVVLLSTSIL-STQSVLKS 107 (335)
Q Consensus 32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~---aDvVIlavp~~-~~~~vl~~ 107 (335)
|+|+|||+|.||..+|..|.+.|++|++|||+++..+.+.+.|+....++++++ ++ +|+||+|+|.+ .+.+++..
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~-~~~~~advVi~~vp~~~~~~~v~~~ 79 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELV-SKLEAPRTIWVMVPAGEVTESVIKD 79 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHH-HhCCCCCEEEEEecCchHHHHHHHH
Confidence 589999999999999999999999999999998877667778887777888876 44 69999999998 78888888
Q ss_pred ccccccCCccEEEEcCCCCchHHHHHHhhC-CCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHHH
Q 044593 108 IPFQRLKRSTLFVDVLSVKEFPRNLFLKYL-PQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLD 186 (335)
Q Consensus 108 l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l-~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~ 186 (335)
+. +.++++++|+|++++.......+.+.+ ..+..|+.+ |+.|...+.. .|.+ ++ ++++ ++.++++++
T Consensus 80 i~-~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vda-pV~G~~~~a~--~g~~-~~----~gG~---~~~~~~~~~ 147 (299)
T PRK12490 80 LY-PLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDC-GTSGGVWGLR--NGYC-LM----VGGD---KEIYDRLEP 147 (299)
T ss_pred Hh-ccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeC-CCCCCHHHHh--cCCe-EE----ecCC---HHHHHHHHH
Confidence 84 568899999999888765555554444 346778775 8998865422 5553 33 2444 457889999
Q ss_pred HHHhcCC---EEEEeChHHHHHHHHHhhhhH
Q 044593 187 VFAKEGC---RMVEMSCFDHDKYAAGSQFVT 214 (335)
Q Consensus 187 l~~~~G~---~v~~~~~~eHD~~~A~~s~lp 214 (335)
+++.+|. +++++.+..-...+.++.++.
T Consensus 148 ~l~~~~~~~~~~~~~G~~g~a~~~Kl~~n~~ 178 (299)
T PRK12490 148 VFKALAPEGPGYVHAGPVGSGHFLKMVHNGI 178 (299)
T ss_pred HHHHhcCcCCcEEEECCcCHHHHHHHHHHHH
Confidence 9999997 688888766666777766543
No 29
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.74 E-value=1e-16 Score=148.11 Aligned_cols=166 Identities=16% Similarity=0.215 Sum_probs=123.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCC----eEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHH
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHH----TLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVL 105 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~----~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl 105 (335)
..|||+|||+|+||++++..|.+++. ++++++++++.. +.....++.+++ .++|+||+|+|+..+.+++
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~-~~~D~Vilavkp~~~~~vl 74 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT------PFVYLQSNEELA-KTCDIIVLAVKPDLAGKVL 74 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC------CeEEeCChHHHH-HhCCEEEEEeCHHHHHHHH
Confidence 45799999999999999999999872 599999886432 334455666666 7899999999999999999
Q ss_pred hhccccccCCccEEEEcCCCCchHHHHHHhhCCCC---CceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHH
Q 044593 106 KSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQD---FDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVD 182 (335)
Q Consensus 106 ~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~---~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~ 182 (335)
.++. +.++++.+|.++++++. +.+++.++.. +++++.||.. .+ .| ++.+++ .+..+.+..+
T Consensus 75 ~~i~-~~l~~~~iIS~~aGi~~---~~l~~~~~~~~~vvr~mPn~p~~---~g----~g-~t~i~~----~~~~~~~~~~ 138 (260)
T PTZ00431 75 LEIK-PYLGSKLLISICGGLNL---KTLEEMVGVEAKIVRVMPNTPSL---VG----QG-SLVFCA----NNNVDSTDKK 138 (260)
T ss_pred HHHH-hhccCCEEEEEeCCccH---HHHHHHcCCCCeEEEECCCchhH---hc----ce-eEEEEe----CCCCCHHHHH
Confidence 9995 56777788889999875 4555555533 3566666622 21 22 234432 2233455678
Q ss_pred HHHHHHHhcCCEEEEeChHHHHHHHHHhhhhHHHHHH
Q 044593 183 KFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGR 219 (335)
Q Consensus 183 ~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la~ 219 (335)
.++++|+.+|. ++++++++-|.+++++...|-+++.
T Consensus 139 ~v~~l~~~~G~-~~~v~E~~~d~~ta~~gsgPA~~~~ 174 (260)
T PTZ00431 139 KVIDIFSACGI-IQEIKEKDMDIATAISGCGPAYVFL 174 (260)
T ss_pred HHHHHHHhCCc-EEEEChHHcchhhhhcCCHHHHHHH
Confidence 99999999995 7788888999999999988886654
No 30
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.74 E-value=2.2e-16 Score=148.47 Aligned_cols=169 Identities=15% Similarity=0.192 Sum_probs=129.9
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHhhcc-
Q 044593 32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLKSIP- 109 (335)
Q Consensus 32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~~l~- 109 (335)
+||+|||+|.||..+|..|.++|++|++|||+++..+.+.+.|+....++.+++ +++|+||+|+|.+. +..++....
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~-~~aDvVi~~vp~~~~~~~vl~~~~~ 80 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAA-AGAEFVITMLPNGDLVRSVLFGENG 80 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHH-hcCCEEEEecCCHHHHHHHHcCccc
Confidence 589999999999999999999999999999999887777777887777888777 79999999999985 677765321
Q ss_pred -ccccCCccEEEEcCCCCchHHHHHHhhC-CCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHHHH
Q 044593 110 -FQRLKRSTLFVDVLSVKEFPRNLFLKYL-PQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDV 187 (335)
Q Consensus 110 -~~~l~~~~iVvd~~SvK~~~~~~l~~~l-~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l 187 (335)
.+.++++++|+|++++.....+.+.+.+ ..+..|+. -|+.|..... ..|...++. +++ ++.+++++++
T Consensus 81 i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ld-apV~g~~~~a--~~g~l~~~~----gg~---~~~~~~~~p~ 150 (296)
T PRK15461 81 VCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMD-VPVGRTSDNA--ITGTLLLLA----GGT---AEQVERATPI 150 (296)
T ss_pred HhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEE-ccCCCCHHHH--HhCcEEEEE----CCC---HHHHHHHHHH
Confidence 2357889999999998776666665544 34577886 4888865432 256554553 444 4578889999
Q ss_pred HHhcCCEEEEeChHHHHHHHHHhh
Q 044593 188 FAKEGCRMVEMSCFDHDKYAAGSQ 211 (335)
Q Consensus 188 ~~~~G~~v~~~~~~eHD~~~A~~s 211 (335)
|+.+|.+++++.+..-...+.++.
T Consensus 151 l~~~g~~~~~~g~~G~g~~~Kl~~ 174 (296)
T PRK15461 151 LMAMGNELINAGGPGMGIRVKLIN 174 (296)
T ss_pred HHHHcCCeEeeCCCCHHHHHHHHH
Confidence 999999999998765555566554
No 31
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.73 E-value=2.2e-16 Score=148.26 Aligned_cols=171 Identities=18% Similarity=0.225 Sum_probs=129.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHH---h
Q 044593 31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVL---K 106 (335)
Q Consensus 31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl---~ 106 (335)
+|||+|||+|.||..+|..|.+.|++|++|||+++..+.+.+.|+....+..+++ .++|+||+|+|... +..++ .
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~-~~~d~vi~~vp~~~~~~~v~~~~~ 80 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVA-EQCDVIITMLPNSPHVKEVALGEN 80 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHH-hcCCEEEEeCCCHHHHHHHHcCcc
Confidence 4789999999999999999999999999999998877767777887777888887 79999999999765 45555 2
Q ss_pred hccccccCCccEEEEcCCCCchHHHHHHhhCC-CCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHH
Q 044593 107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLP-QDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFL 185 (335)
Q Consensus 107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~-~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~ 185 (335)
.+. +.++++++|+|+++++....+.+.+.+. .+.+|+. +|++|..... ..+...++. +++ .+.++.+.
T Consensus 81 ~~~-~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d-~pv~g~~~~a--~~g~l~i~~----gg~---~~~~~~~~ 149 (296)
T PRK11559 81 GII-EGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLD-APVSGGEPKA--IDGTLSVMV----GGD---KAIFDKYY 149 (296)
T ss_pred hHh-hcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEE-cCCCCCHHHH--hhCcEEEEE----CCC---HHHHHHHH
Confidence 343 4578999999999998766666665543 3567776 4888876421 234444442 443 45788899
Q ss_pred HHHHhcCCEEEEeChHHHHHHHHHhhhh
Q 044593 186 DVFAKEGCRMVEMSCFDHDKYAAGSQFV 213 (335)
Q Consensus 186 ~l~~~~G~~v~~~~~~eHD~~~A~~s~l 213 (335)
++++.+|.+++++.+......+.++..+
T Consensus 150 ~~l~~~~~~~~~~g~~g~a~~~Kl~~n~ 177 (296)
T PRK11559 150 DLMKAMAGSVVHTGDIGAGNVTKLANQV 177 (296)
T ss_pred HHHHHhcCCeEEeCCcCHHHHHHHHHHH
Confidence 9999999999988766555666665543
No 32
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.73 E-value=1.6e-15 Score=143.48 Aligned_cols=165 Identities=15% Similarity=0.118 Sum_probs=121.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHH-----------HhCCC-------------ceecChhhHhh
Q 044593 31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVR-----------QQLNA-------------PFFADLNDLCE 86 (335)
Q Consensus 31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a-----------~~~g~-------------~~~~~~~~~~~ 86 (335)
+|+|+|||+|.||+++|..|.++|++|++||++++..+.+ .+.|. ..+.++.+++
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~- 80 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAV- 80 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhh-
Confidence 3689999999999999999999999999999998655432 23342 3556777776
Q ss_pred cCCCEEEEecCch--hHHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcc
Q 044593 87 LHPDVVLLSTSIL--STQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPF 164 (335)
Q Consensus 87 ~~aDvVIlavp~~--~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~ 164 (335)
++||+||.|+|.. ....++.++. ...+++.+|. +|++......+.+.+....++++.|||.++... . ..
T Consensus 81 ~~ad~Vi~avpe~~~~k~~~~~~l~-~~~~~~~ii~--ssts~~~~~~la~~~~~~~~~~~~hp~~p~~~~-----~-lv 151 (308)
T PRK06129 81 ADADYVQESAPENLELKRALFAELD-ALAPPHAILA--SSTSALLASAFTEHLAGRERCLVAHPINPPYLI-----P-VV 151 (308)
T ss_pred CCCCEEEECCcCCHHHHHHHHHHHH-HhCCCcceEE--EeCCCCCHHHHHHhcCCcccEEEEecCCCcccC-----c-eE
Confidence 7999999999987 3566777774 3455555553 445556667777777655679999999875421 1 11
Q ss_pred eecccccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHH
Q 044593 165 MYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAG 209 (335)
Q Consensus 165 i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~ 209 (335)
.+ ++.+.++++.++.+.++++.+|.++++++++.|+.+...
T Consensus 152 ei----v~~~~t~~~~~~~~~~~~~~lG~~~v~v~~~~~G~i~nr 192 (308)
T PRK06129 152 EV----VPAPWTAPATLARAEALYRAAGQSPVRLRREIDGFVLNR 192 (308)
T ss_pred EE----eCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCccHHHHH
Confidence 22 344455677889999999999999999998888865443
No 33
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=99.73 E-value=2.7e-16 Score=143.64 Aligned_cols=176 Identities=16% Similarity=0.153 Sum_probs=140.8
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHhh
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLKS 107 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~~ 107 (335)
.+.++||+||+|.||..++..|.++||.|++|||+.+.++...+.|.....++.|++ +.+|+||.++|... +.+++..
T Consensus 33 ~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVa-e~sDvvitmv~~~~~v~~v~~g 111 (327)
T KOG0409|consen 33 PSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVA-EDSDVVITMVPNPKDVKDVLLG 111 (327)
T ss_pred cccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHH-hhcCEEEEEcCChHhhHHHhcC
Confidence 457899999999999999999999999999999999999889999999999999998 89999999999875 5566543
Q ss_pred cc--ccccCCccEE-EEcCCCCchHHHHHHhhCC-CCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHH
Q 044593 108 IP--FQRLKRSTLF-VDVLSVKEFPRNLFLKYLP-QDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDK 183 (335)
Q Consensus 108 l~--~~~l~~~~iV-vd~~SvK~~~~~~l~~~l~-~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~ 183 (335)
-. ...++++... +|.++++......+.+... .+.+|+- -|+.|...+.+ .|.-.++. +++ ++.+++
T Consensus 112 ~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vD-APVSGg~~~A~--~G~Ltima----gGd---e~~~~~ 181 (327)
T KOG0409|consen 112 KSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVD-APVSGGVKGAE--EGTLTIMA----GGD---EALFEA 181 (327)
T ss_pred CCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEe-ccccCCchhhh--cCeEEEEe----cCc---HHHHHH
Confidence 21 1234566666 8999999888777766553 4567876 49999886542 56655653 443 567889
Q ss_pred HHHHHHhcCCEEEEeChHHHHHHHHHhhhhHH
Q 044593 184 FLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTH 215 (335)
Q Consensus 184 v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph 215 (335)
...+|+.+|.+++++..--....+.+++++..
T Consensus 182 ~~~~~~~mGk~~~~~G~~GnG~~~Kl~nnm~~ 213 (327)
T KOG0409|consen 182 ASPVFKLMGKNVVFLGGVGNGQAAKLCNNMLL 213 (327)
T ss_pred HHHHHHHhcceEEEecccCchHHHHHHHHHHH
Confidence 99999999999999988877778888776654
No 34
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.72 E-value=9.9e-16 Score=144.19 Aligned_cols=170 Identities=14% Similarity=0.157 Sum_probs=126.3
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhh--cCCCEEEEecCchhHHHHHhhcc
Q 044593 32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCE--LHPDVVLLSTSILSTQSVLKSIP 109 (335)
Q Consensus 32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~--~~aDvVIlavp~~~~~~vl~~l~ 109 (335)
|||+|||+|.||+.+|..|.++|++|.+|||+++..+.+.+.|.....++.++.. ..+|+||+|+|...+.++++++.
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~~~~~v~~~l~ 80 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHGIVDAVLEELA 80 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCchHHHHHHHHHH
Confidence 5899999999999999999999999999999998877677777766666655431 46899999999999899999985
Q ss_pred ccccCCccEEEEcCCCCch-HHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHHHHH
Q 044593 110 FQRLKRSTLFVDVLSVKEF-PRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVF 188 (335)
Q Consensus 110 ~~~l~~~~iVvd~~SvK~~-~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l~ 188 (335)
+.++++.+|+|++++... ..+..+.....+.+|+.+ |+.|...+. ..|. .++ ++++ ++.++.++++|
T Consensus 81 -~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda-~vsGg~~~a--~~G~-~~~----~gG~---~~~~~~~~~~l 148 (298)
T TIGR00872 81 -PTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDC-GTSGGVWGR--ERGY-CFM----IGGD---GEAFARAEPLF 148 (298)
T ss_pred -hhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEec-CCCCCHHHH--hcCC-eee----eCCC---HHHHHHHHHHH
Confidence 678899999999887633 333333333456789886 677655432 2453 333 2444 45778899999
Q ss_pred HhcCC---EEEEeChHHHHHHHHHhhhh
Q 044593 189 AKEGC---RMVEMSCFDHDKYAAGSQFV 213 (335)
Q Consensus 189 ~~~G~---~v~~~~~~eHD~~~A~~s~l 213 (335)
+.++. .++++.+..-...+..+.+.
T Consensus 149 ~~~~~~~~~~~~~G~~G~~~~~K~~~n~ 176 (298)
T TIGR00872 149 ADVAPEEQGYLYCGPCGSGHFVKMVHNG 176 (298)
T ss_pred HHhcCcCCCEEEECCccHhHHHHHHHHH
Confidence 99986 47888776555566665543
No 35
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.72 E-value=3.7e-16 Score=155.25 Aligned_cols=174 Identities=14% Similarity=0.124 Sum_probs=132.3
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhC----CCc---eecChhhHhhcC---CCEEEEecCc
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQL----NAP---FFADLNDLCELH---PDVVLLSTSI 98 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~----g~~---~~~~~~~~~~~~---aDvVIlavp~ 98 (335)
...++|||||+|.||..||+.|.++|++|++|||+++..+...+. |.. ...++.+++ +. +|+||+|+|.
T Consensus 4 ~~~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v-~~l~~~dvIi~~v~~ 82 (493)
T PLN02350 4 AALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFV-LSIQKPRSVIILVKA 82 (493)
T ss_pred CCCCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHH-hcCCCCCEEEEECCC
Confidence 356789999999999999999999999999999998766544332 543 456788876 54 9999999998
Q ss_pred hh-HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhC-CCCCceEeccccCCCCCcccccCCCcceecccccCCChh
Q 044593 99 LS-TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYL-PQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEE 176 (335)
Q Consensus 99 ~~-~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l-~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~ 176 (335)
+. +.+++..+. +.+++|.+|+|++++.......+.+.+ ..+++|+.+ |+.|.+.+.. .|. .++ ++++
T Consensus 83 ~~aV~~Vi~gl~-~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~flda-pVSGG~~gA~--~G~-~im----~GG~-- 151 (493)
T PLN02350 83 GAPVDQTIKALS-EYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGM-GVSGGEEGAR--NGP-SLM----PGGS-- 151 (493)
T ss_pred cHHHHHHHHHHH-hhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeC-CCcCCHHHhc--CCC-eEE----ecCC--
Confidence 86 577877774 678899999999988654444444443 357889985 9999886532 564 444 2444
Q ss_pred HHHHHHHHHHHHHhcCCE------EEEeChHHHHHHHHHhhhhHH
Q 044593 177 RIKRVDKFLDVFAKEGCR------MVEMSCFDHDKYAAGSQFVTH 215 (335)
Q Consensus 177 ~~~~~~~v~~l~~~~G~~------v~~~~~~eHD~~~A~~s~lph 215 (335)
++.+++++++|+.+|.+ ++++.+.-....+.++++..-
T Consensus 152 -~~a~~~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~ 195 (493)
T PLN02350 152 -FEAYKNIEDILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIE 195 (493)
T ss_pred -HHHHHHHHHHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHH
Confidence 46789999999999965 888988777778888775533
No 36
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.71 E-value=1.2e-15 Score=143.81 Aligned_cols=171 Identities=15% Similarity=0.159 Sum_probs=132.3
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcC---CCEEEEecCch-hHHHHHhh
Q 044593 32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELH---PDVVLLSTSIL-STQSVLKS 107 (335)
Q Consensus 32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~---aDvVIlavp~~-~~~~vl~~ 107 (335)
|||+|||+|.||..+|..|.++|++|++|||+++..+.+.+.|+....++.+++ +. +|+||+|+|.. .+.+++..
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~-~~~~~~dvvi~~v~~~~~~~~v~~~ 79 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELV-AKLPAPRVVWLMVPAGEITDATIDE 79 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHH-hhcCCCCEEEEEecCCcHHHHHHHH
Confidence 589999999999999999999999999999999877767778888777888776 44 69999999998 67888887
Q ss_pred ccccccCCccEEEEcCCCCchHHHHHHhhC-CCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHHH
Q 044593 108 IPFQRLKRSTLFVDVLSVKEFPRNLFLKYL-PQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLD 186 (335)
Q Consensus 108 l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l-~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~ 186 (335)
+. +.++++++|+|++++.......+.+.+ ..+..|+. -|+.|...+.. .|. .++ ++++ .+.++.+++
T Consensus 80 l~-~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~d-apvsG~~~~a~--~g~-~~~----~gG~---~~~~~~~~~ 147 (301)
T PRK09599 80 LA-PLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVD-VGTSGGVWGLE--RGY-CLM----IGGD---KEAVERLEP 147 (301)
T ss_pred HH-hhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEe-CCCCcCHHHHh--cCC-eEE----ecCC---HHHHHHHHH
Confidence 74 568899999999887765554444433 35678886 69999865432 454 344 2444 457788999
Q ss_pred HHHhcCC----EEEEeChHHHHHHHHHhhhhHH
Q 044593 187 VFAKEGC----RMVEMSCFDHDKYAAGSQFVTH 215 (335)
Q Consensus 187 l~~~~G~----~v~~~~~~eHD~~~A~~s~lph 215 (335)
+++.++. +++++.+..-...+.++.+...
T Consensus 148 ~l~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~ 180 (301)
T PRK09599 148 IFKALAPRAEDGYLHAGPVGAGHFVKMVHNGIE 180 (301)
T ss_pred HHHHHcccccCCeEeECCCcHHHHHHHHHHHHH
Confidence 9999998 7899988766666776654433
No 37
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.71 E-value=3.6e-16 Score=145.72 Aligned_cols=174 Identities=10% Similarity=0.135 Sum_probs=131.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcC----CeEEEEcCCCCc-HHHH-HhC-CCceecChhhHhhcCCCEEEEecCchhHHH
Q 044593 31 SLKIAVIGFGNFGQFLAKAFARHH----HTLLVHSRSDHS-PAVR-QQL-NAPFFADLNDLCELHPDVVLLSTSILSTQS 103 (335)
Q Consensus 31 ~~kI~IIG~G~mG~siA~~L~~~G----~~V~~~dr~~~~-~~~a-~~~-g~~~~~~~~~~~~~~aDvVIlavp~~~~~~ 103 (335)
|+||+|||+|+||++++..|.++| ++|++|++++.. .+.. .+. ++....+..+++ .++|+||+|+|+..+.+
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~-~~aDvVilavpp~~~~~ 79 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIF-TKCDHSFICVPPLAVLP 79 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHH-hhCCEEEEecCHHHHHH
Confidence 468999999999999999999988 689999987532 2222 223 233456667776 78999999999999999
Q ss_pred HHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHH
Q 044593 104 VLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDK 183 (335)
Q Consensus 104 vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~ 183 (335)
++.++. +.++++++|+++... ...+.+++.++. .+++...|......+ .|...+. ..+..+.+..+.
T Consensus 80 vl~~l~-~~l~~~~~ivS~~aG--i~~~~l~~~~~~-~~vvR~MPN~~~~~g----~g~t~~~-----~~~~~~~~~~~~ 146 (277)
T PRK06928 80 LLKDCA-PVLTPDRHVVSIAAG--VSLDDLLEITPG-LQVSRLIPSLTSAVG----VGTSLVA-----HAETVNEANKSR 146 (277)
T ss_pred HHHHHH-hhcCCCCEEEEECCC--CCHHHHHHHcCC-CCEEEEeCccHHHHh----hhcEEEe-----cCCCCCHHHHHH
Confidence 999995 567788888877543 445678888764 478888998876655 4543332 123334566788
Q ss_pred HHHHHHhcCCEEEEeChHHHHHHHHHhhhhHHHHHH
Q 044593 184 FLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGR 219 (335)
Q Consensus 184 v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la~ 219 (335)
++++|+.+| +++++++++-|.++|+++..|-.++.
T Consensus 147 v~~l~~~~G-~~~~v~E~~~d~~tal~gsgPA~~~~ 181 (277)
T PRK06928 147 LEETLSHFS-HVMTIREENMDIASNLTSSSPGFIAA 181 (277)
T ss_pred HHHHHHhCC-CEEEEchhhCceeeeeecCHHHHHHH
Confidence 999999999 47788888999999999999887654
No 38
>PRK07680 late competence protein ComER; Validated
Probab=99.71 E-value=6.5e-16 Score=143.64 Aligned_cols=171 Identities=13% Similarity=0.173 Sum_probs=122.5
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCC----eEEEEcCCCCcHHHHHh-C-CCceecChhhHhhcCCCEEEEecCchhHHHHH
Q 044593 32 LKIAVIGFGNFGQFLAKAFARHHH----TLLVHSRSDHSPAVRQQ-L-NAPFFADLNDLCELHPDVVLLSTSILSTQSVL 105 (335)
Q Consensus 32 ~kI~IIG~G~mG~siA~~L~~~G~----~V~~~dr~~~~~~~a~~-~-g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl 105 (335)
|+|+|||+|.||++++..|.++|+ +|++|+|+++..+...+ . |+....+..+++ .++|+||+|+|+..+.+++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~-~~aDiVilav~p~~~~~vl 79 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVI-SQSDLIFICVKPLDIYPLL 79 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHH-HhCCEEEEecCHHHHHHHH
Confidence 589999999999999999999983 79999999866543333 3 666667777776 7899999999999999999
Q ss_pred hhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHH
Q 044593 106 KSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFL 185 (335)
Q Consensus 106 ~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~ 185 (335)
+++. +.++++++|+++++. ...+.+++.++. ..+..+|... .. ...|...+.. + +..+.+..+.+.
T Consensus 80 ~~l~-~~l~~~~~iis~~ag--~~~~~L~~~~~~--~~~r~~p~~~-~~---~~~G~t~~~~----g-~~~~~~~~~~~~ 145 (273)
T PRK07680 80 QKLA-PHLTDEHCLVSITSP--ISVEQLETLVPC--QVARIIPSIT-NR---ALSGASLFTF----G-SRCSEEDQQKLE 145 (273)
T ss_pred HHHH-hhcCCCCEEEEECCC--CCHHHHHHHcCC--CEEEECCChH-HH---HhhccEEEee----C-CCCCHHHHHHHH
Confidence 9985 678888899999764 235677776653 3556666321 11 1145433321 2 122334568899
Q ss_pred HHHHhcCCEEEEeChHHHHHHHHHhhhhHHHHH
Q 044593 186 DVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMG 218 (335)
Q Consensus 186 ~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la 218 (335)
++|+.+| .+++++++..|...++....|-+++
T Consensus 146 ~ll~~~G-~~~~i~e~~~~~~~~l~gs~pa~~~ 177 (273)
T PRK07680 146 RLFSNIS-TPLVIEEDITRVSSDIVSCGPAFFS 177 (273)
T ss_pred HHHHcCC-CEEEEChHhcchhhhhccchHHHHH
Confidence 9999999 5778887777777776665555443
No 39
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.70 E-value=3.8e-16 Score=143.99 Aligned_cols=163 Identities=17% Similarity=0.229 Sum_probs=117.5
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCC---eEEEEcCCCCcHHHHH-hC-CCceecChhhHhhcCCCEEEEecCchhHHHHHh
Q 044593 32 LKIAVIGFGNFGQFLAKAFARHHH---TLLVHSRSDHSPAVRQ-QL-NAPFFADLNDLCELHPDVVLLSTSILSTQSVLK 106 (335)
Q Consensus 32 ~kI~IIG~G~mG~siA~~L~~~G~---~V~~~dr~~~~~~~a~-~~-g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~ 106 (335)
|||+|||+|+||+++++.|.+.|+ .+.+++|+++..+... .. ++....+..+++ .++|+||+|+|++.+.+++.
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~-~~aDvVilav~p~~~~~vl~ 79 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVV-DRSDVVFLAVRPQIAEEVLR 79 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHH-HhCCEEEEEeCHHHHHHHHH
Confidence 589999999999999999999886 3578999877654333 34 456667777777 78999999999999999998
Q ss_pred hccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHHH
Q 044593 107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLD 186 (335)
Q Consensus 107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~ 186 (335)
++. ++++++|+++.+. ...+.+++.++.+...+..||+.....+ .|.. .++ +.+ +.+++
T Consensus 80 ~l~---~~~~~~vis~~ag--~~~~~l~~~~~~~~~~~r~~P~~~~a~~----~g~t-~~~----~~~-------~~~~~ 138 (258)
T PRK06476 80 ALR---FRPGQTVISVIAA--TDRAALLEWIGHDVKLVRAIPLPFVAER----KGVT-AIY----PPD-------PFVAA 138 (258)
T ss_pred Hhc---cCCCCEEEEECCC--CCHHHHHHHhCCCCCEEEECCCChhhhC----CCCe-Eec----CCH-------HHHHH
Confidence 873 4577777776433 3346666666554567777887443322 2332 222 221 47789
Q ss_pred HHHhcCCEEEEeChHHHHHHHHHhhhhHHH
Q 044593 187 VFAKEGCRMVEMSCFDHDKYAAGSQFVTHT 216 (335)
Q Consensus 187 l~~~~G~~v~~~~~~eHD~~~A~~s~lph~ 216 (335)
+|+.+|..+...+++++|.+.++.++...+
T Consensus 139 l~~~lG~~~~~~~e~~~d~~~a~~s~~a~~ 168 (258)
T PRK06476 139 LFDALGTAVECDSEEEYDLLAAASALMATY 168 (258)
T ss_pred HHHhcCCcEEECChHhccceeehhccHHHH
Confidence 999999887777899999998887654443
No 40
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.70 E-value=5.9e-15 Score=141.03 Aligned_cols=174 Identities=16% Similarity=0.183 Sum_probs=128.1
Q ss_pred CeEEEEcccHH--------------------HHHHHHHHHHcCCeEEEEcCCCC-----cHHHHHhCCCceecChhhHhh
Q 044593 32 LKIAVIGFGNF--------------------GQFLAKAFARHHHTLLVHSRSDH-----SPAVRQQLNAPFFADLNDLCE 86 (335)
Q Consensus 32 ~kI~IIG~G~m--------------------G~siA~~L~~~G~~V~~~dr~~~-----~~~~a~~~g~~~~~~~~~~~~ 86 (335)
|||.|.|+|+- |..+|..|.++||+|++||++++ ..+.+.+.|+...++..+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa- 79 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAA- 79 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHH-
Confidence 68889998886 89999999999999999999986 33446677887777887777
Q ss_pred cCCCEEEEecCchh-HHHHHhhccccccCCccEEEEcCCCCchHH-HHHHhhCCC---CCceEeccccC--CCCCccccc
Q 044593 87 LHPDVVLLSTSILS-TQSVLKSIPFQRLKRSTLFVDVLSVKEFPR-NLFLKYLPQ---DFDILCTHPMF--GPESAKSSW 159 (335)
Q Consensus 87 ~~aDvVIlavp~~~-~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~-~~l~~~l~~---~~~~v~~HPma--G~~~~~~~~ 159 (335)
.++|+||+|+|... +.+++..+. +.++++++|+|+++++.... +.+.+.++. ...+...||+. |.+.
T Consensus 80 ~~ADvVIlaVP~~~~v~~Vl~~L~-~~L~~g~IVId~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~Gae~----- 153 (342)
T PRK12557 80 KHGEIHILFTPFGKKTVEIAKNIL-PHLPENAVICNTCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPGTPQ----- 153 (342)
T ss_pred hCCCEEEEECCCcHHHHHHHHHHH-hhCCCCCEEEEecCCCHHHHHHHHHHHhcccccccCeeecCCcccccccc-----
Confidence 89999999999998 889998885 67889999999999987665 566666542 23566677764 3322
Q ss_pred CCCcceeccc-ccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHhhhhHHHH
Q 044593 160 ENLPFMYDKV-RIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTM 217 (335)
Q Consensus 160 ~g~~~i~~~~-~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~l 217 (335)
+...+++.. .......+++.+++++++|+.+|.+++++++. ....+++++|++
T Consensus 154 -g~l~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G~~v~~~~~g----~~~~vk~~~n~l 207 (342)
T PRK12557 154 -HGHYVIAGKTTNGTELATEEQIEKCVELAESIGKEPYVVPAD----VVSAVADMGSLV 207 (342)
T ss_pred -chheEEeCCCcccccCCCHHHHHHHHHHHHHcCCEEEEeCHH----HHHHHHHHHHHH
Confidence 111222211 01112234567899999999999999999963 466677777765
No 41
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.68 E-value=1.8e-15 Score=138.12 Aligned_cols=176 Identities=13% Similarity=0.139 Sum_probs=128.9
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCC----eEEEEcCC-CCcHH-HHHhCCCceecChhhHhhcCCCEEEEecCchhHH
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHHH----TLLVHSRS-DHSPA-VRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQ 102 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G~----~V~~~dr~-~~~~~-~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~ 102 (335)
|+.+||+|||+|.||.+++..|.+.|+ ++++++++ ++..+ .+...++..+.+..+++ +++|+||+|||+....
T Consensus 2 m~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~DiViiavp~~~~~ 80 (245)
T PRK07634 2 LKKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHV-TSVDTIVLAMPPSAHE 80 (245)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHH-hcCCEEEEecCHHHHH
Confidence 456899999999999999999998863 37778875 44443 33446776667777777 7899999999999999
Q ss_pred HHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHH
Q 044593 103 SVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVD 182 (335)
Q Consensus 103 ~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~ 182 (335)
++++++. +.++ +++|++++.. ...+.+++.++.+..++..||.+..+.+ .|.+.+... ...+++..+
T Consensus 81 ~v~~~l~-~~~~-~~~vis~~~g--i~~~~l~~~~~~~~~v~r~~Pn~a~~v~----~g~~~~~~~-----~~~~~~~~~ 147 (245)
T PRK07634 81 ELLAELS-PLLS-NQLVVTVAAG--IGPSYLEERLPKGTPVAWIMPNTAAEIG----KSISLYTMG-----QSVNETHKE 147 (245)
T ss_pred HHHHHHH-hhcc-CCEEEEECCC--CCHHHHHHHcCCCCeEEEECCcHHHHHh----cCCeEEeeC-----CCCCHHHHH
Confidence 9999985 5555 4566666432 3446778778765678888997776654 455544421 223456778
Q ss_pred HHHHHHHhcCCEEEEeChHHHHHHHHHhhhhHHHHHH
Q 044593 183 KFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGR 219 (335)
Q Consensus 183 ~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la~ 219 (335)
.++++|+.+|..+ ++++++.|.+.|++...|-.+..
T Consensus 148 ~v~~lf~~~G~~~-~~~e~~~~~~~a~~gs~pa~~~~ 183 (245)
T PRK07634 148 TLQLILKGIGTSQ-LCTEEEVHQLTAVTGSAPAFLYY 183 (245)
T ss_pred HHHHHHHhCCCEE-EECHHHcchHHhhhcchHHHHHH
Confidence 9999999999765 57888888888887777665443
No 42
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.68 E-value=2.3e-15 Score=149.38 Aligned_cols=170 Identities=15% Similarity=0.136 Sum_probs=128.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhC----C--CceecChhhHhhc---CCCEEEEecCch-h
Q 044593 31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQL----N--APFFADLNDLCEL---HPDVVLLSTSIL-S 100 (335)
Q Consensus 31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~----g--~~~~~~~~~~~~~---~aDvVIlavp~~-~ 100 (335)
+.+|+|||+|.||+++|..|.++||+|++|||+++..+...+. | +..+.++++++ . ++|+||+++|+. .
T Consensus 1 ~~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v-~~l~~~d~Iil~v~~~~~ 79 (470)
T PTZ00142 1 MSDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELV-NSLKKPRKVILLIKAGEA 79 (470)
T ss_pred CCEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHH-hcCCCCCEEEEEeCChHH
Confidence 3589999999999999999999999999999999876544432 5 33567788876 4 589999997665 5
Q ss_pred HHHHHhhccccccCCccEEEEcCCCCch-HHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHH
Q 044593 101 TQSVLKSIPFQRLKRSTLFVDVLSVKEF-PRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIK 179 (335)
Q Consensus 101 ~~~vl~~l~~~~l~~~~iVvd~~SvK~~-~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~ 179 (335)
+.++++++. +.+++|.+|+|++++... ..+...+....+++|+.+ |+.|.+.+.. .|. .++ ++++ ++
T Consensus 80 v~~vi~~l~-~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~flda-pVSGG~~gA~--~G~-~lm----~GG~---~~ 147 (470)
T PTZ00142 80 VDETIDNLL-PLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGM-GVSGGEEGAR--YGP-SLM----PGGN---KE 147 (470)
T ss_pred HHHHHHHHH-hhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcC-CCCCCHHHHh--cCC-EEE----EeCC---HH
Confidence 788998885 689999999999877433 333333444567889885 9999876432 454 344 2444 46
Q ss_pred HHHHHHHHHHhcCCE------EEEeChHHHHHHHHHhhhh
Q 044593 180 RVDKFLDVFAKEGCR------MVEMSCFDHDKYAAGSQFV 213 (335)
Q Consensus 180 ~~~~v~~l~~~~G~~------v~~~~~~eHD~~~A~~s~l 213 (335)
.++.++++|+.++.+ +.++.+.-....+.++++.
T Consensus 148 a~~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ 187 (470)
T PTZ00142 148 AYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNG 187 (470)
T ss_pred HHHHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHH
Confidence 789999999999988 7888887666677777644
No 43
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.67 E-value=5.4e-14 Score=133.16 Aligned_cols=168 Identities=14% Similarity=0.117 Sum_probs=123.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHh-----------CC---------CceecChhhHhhcCC
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ-----------LN---------APFFADLNDLCELHP 89 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~-----------~g---------~~~~~~~~~~~~~~a 89 (335)
..+||+|||+|.||..||..|..+|++|++||++++..+.+.+ .| +...+++++++ .+|
T Consensus 6 ~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av-~~a 84 (321)
T PRK07066 6 DIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACV-ADA 84 (321)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHh-cCC
Confidence 4578999999999999999999999999999999865432211 22 23456777777 899
Q ss_pred CEEEEecCchh--HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceec
Q 044593 90 DVVLLSTSILS--TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYD 167 (335)
Q Consensus 90 DvVIlavp~~~--~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~ 167 (335)
|+||-|+|... -..++.++. ..++++++|...+|. .....+.+.+...-+|+++||...+..- | +++
T Consensus 85 DlViEavpE~l~vK~~lf~~l~-~~~~~~aIlaSnTS~--l~~s~la~~~~~p~R~~g~HffnP~~~~-------p-LVE 153 (321)
T PRK07066 85 DFIQESAPEREALKLELHERIS-RAAKPDAIIASSTSG--LLPTDFYARATHPERCVVGHPFNPVYLL-------P-LVE 153 (321)
T ss_pred CEEEECCcCCHHHHHHHHHHHH-HhCCCCeEEEECCCc--cCHHHHHHhcCCcccEEEEecCCccccC-------c-eEE
Confidence 99999999875 456778884 568888866655553 4556677766655689999998776642 2 221
Q ss_pred ccccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHhh
Q 044593 168 KVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQ 211 (335)
Q Consensus 168 ~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s 211 (335)
+++++.++++.++.+.++++.+|..++.+..+....+..-++
T Consensus 154 --Vv~g~~T~~e~~~~~~~f~~~lGk~pV~v~kd~pGFi~NRl~ 195 (321)
T PRK07066 154 --VLGGERTAPEAVDAAMGIYRALGMRPLHVRKEVPGFIADRLL 195 (321)
T ss_pred --EeCCCCCCHHHHHHHHHHHHHcCCEeEecCCCCccHHHHHHH
Confidence 234566778899999999999999998886555455444433
No 44
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.67 E-value=3.6e-14 Score=142.42 Aligned_cols=165 Identities=15% Similarity=0.102 Sum_probs=119.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHh-------------------CC-CceecChhhHhhcCCC
Q 044593 31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ-------------------LN-APFFADLNDLCELHPD 90 (335)
Q Consensus 31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~-------------------~g-~~~~~~~~~~~~~~aD 90 (335)
.|||+|||+|.||++||..|.++|++|++||++++..+...+ .| +...+++.+++ ++||
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~-~~aD 82 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAV-AGAD 82 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHh-cCCC
Confidence 569999999999999999999999999999999876542211 12 45567777777 8999
Q ss_pred EEEEecCchh--HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceecc
Q 044593 91 VVLLSTSILS--TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDK 168 (335)
Q Consensus 91 vVIlavp~~~--~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~ 168 (335)
+||.|+|.+. ...++.++. ..++++++|...+|. .....+.+.+....+++..||+.++... ..+.+
T Consensus 83 ~Vieavpe~~~vk~~l~~~l~-~~~~~~~iI~SsTsg--i~~s~l~~~~~~~~r~~~~hP~nP~~~~------~Lvev-- 151 (495)
T PRK07531 83 WIQESVPERLDLKRRVLAEID-AAARPDALIGSSTSG--FLPSDLQEGMTHPERLFVAHPYNPVYLL------PLVEL-- 151 (495)
T ss_pred EEEEcCcCCHHHHHHHHHHHH-hhCCCCcEEEEcCCC--CCHHHHHhhcCCcceEEEEecCCCcccC------ceEEE--
Confidence 9999999985 455677774 456777665444333 3345666666655678999999866532 11122
Q ss_pred cccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHH
Q 044593 169 VRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAG 209 (335)
Q Consensus 169 ~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~ 209 (335)
++++.++++.++.+.++++.+|.+++++..+-+..+...
T Consensus 152 --v~g~~t~~e~~~~~~~~~~~lG~~~v~~~k~~~gfi~nr 190 (495)
T PRK07531 152 --VGGGKTSPETIRRAKEILREIGMKPVHIAKEIDAFVGDR 190 (495)
T ss_pred --cCCCCCCHHHHHHHHHHHHHcCCEEEeecCCCcchhHHH
Confidence 355556678899999999999999998875544444443
No 45
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.66 E-value=4.7e-15 Score=147.10 Aligned_cols=169 Identities=14% Similarity=0.136 Sum_probs=126.2
Q ss_pred eEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhC-----CCceecChhhHhh--cCCCEEEEecCc-hhHHHH
Q 044593 33 KIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQL-----NAPFFADLNDLCE--LHPDVVLLSTSI-LSTQSV 104 (335)
Q Consensus 33 kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~-----g~~~~~~~~~~~~--~~aDvVIlavp~-~~~~~v 104 (335)
+|+|||+|.||+.||..|.++|++|++|||+++..+.+.+. ++....++.+++. +.+|+||+|+|+ ..+.++
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V 80 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV 80 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence 48999999999999999999999999999999877655544 2445566666541 368999999999 467889
Q ss_pred HhhccccccCCccEEEEcCCCCchH-HHHHHhhCCCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHH
Q 044593 105 LKSIPFQRLKRSTLFVDVLSVKEFP-RNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDK 183 (335)
Q Consensus 105 l~~l~~~~l~~~~iVvd~~SvK~~~-~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~ 183 (335)
+.++. +.+++|.+|+|+++++... .+..++....+++|+.+ |+.|.+.+.. .|. .++ ++++ ++.++.
T Consensus 81 i~~l~-~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvda-pVsGG~~gA~--~G~-~im----~GG~---~~a~~~ 148 (467)
T TIGR00873 81 INQLL-PLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGS-GVSGGEEGAR--KGP-SIM----PGGS---AEAWPL 148 (467)
T ss_pred HHHHH-hhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcC-CCCCCHHHHh--cCC-cCC----CCCC---HHHHHH
Confidence 98885 6789999999999876433 33334444467889986 7777665432 454 333 2444 467899
Q ss_pred HHHHHHhcCCEE------EEeChHHHHHHHHHhhhh
Q 044593 184 FLDVFAKEGCRM------VEMSCFDHDKYAAGSQFV 213 (335)
Q Consensus 184 v~~l~~~~G~~v------~~~~~~eHD~~~A~~s~l 213 (335)
++++|+.++.++ .++.+.--...+.++++.
T Consensus 149 ~~p~L~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~ 184 (467)
T TIGR00873 149 VAPIFQKIAAKVDGEPCCTWIGPDGAGHYVKMVHNG 184 (467)
T ss_pred HHHHHHHHhhhcCCCCceEEECCcCHHHHHHHHHHH
Confidence 999999999874 788887666677777654
No 46
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.65 E-value=5.9e-15 Score=139.61 Aligned_cols=161 Identities=16% Similarity=0.132 Sum_probs=116.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHh-----CC--------------CceecChhhHhhcCCCE
Q 044593 31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ-----LN--------------APFFADLNDLCELHPDV 91 (335)
Q Consensus 31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~-----~g--------------~~~~~~~~~~~~~~aDv 91 (335)
.+||+|||+|.||+++|..|.++|++|++||++++..+.+.+ .| +..+++..+.+ ++||+
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~aDl 82 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAV-SGADL 82 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHh-ccCCE
Confidence 578999999999999999999999999999999876543332 12 23445666666 79999
Q ss_pred EEEecCchh--HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceeccc
Q 044593 92 VLLSTSILS--TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKV 169 (335)
Q Consensus 92 VIlavp~~~--~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~ 169 (335)
||+|+|++. ...++.++. +.++++++|+..++. .....+.+.++...+|+++||...+.... .+.+
T Consensus 83 Vi~av~~~~~~~~~v~~~l~-~~~~~~~ii~s~tsg--~~~~~l~~~~~~~~~~ig~h~~~p~~~~~------l~~i--- 150 (311)
T PRK06130 83 VIEAVPEKLELKRDVFARLD-GLCDPDTIFATNTSG--LPITAIAQAVTRPERFVGTHFFTPADVIP------LVEV--- 150 (311)
T ss_pred EEEeccCcHHHHHHHHHHHH-HhCCCCcEEEECCCC--CCHHHHHhhcCCcccEEEEccCCCCccCc------eEEE---
Confidence 999999875 677888884 556777777544333 23456766666556799999977665321 1122
Q ss_pred ccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHH
Q 044593 170 RIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDK 205 (335)
Q Consensus 170 ~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~ 205 (335)
++++.++++.++.+.++++.+|..++.+.++....
T Consensus 151 -~~g~~t~~~~~~~v~~l~~~~G~~~v~~~~d~~G~ 185 (311)
T PRK06130 151 -VRGDKTSPQTVATTMALLRSIGKRPVLVKKDIPGF 185 (311)
T ss_pred -eCCCCCCHHHHHHHHHHHHHcCCEEEEEcCCCCCc
Confidence 23444567788999999999999999887654443
No 47
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.65 E-value=6.3e-15 Score=137.61 Aligned_cols=160 Identities=16% Similarity=0.089 Sum_probs=116.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHH-----------HHhCC-------------CceecChhhHh
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAV-----------RQQLN-------------APFFADLNDLC 85 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~-----------a~~~g-------------~~~~~~~~~~~ 85 (335)
.++||+|||+|.||+++|..|.++|++|+++|++++..+. +.+.| +..+++.++ +
T Consensus 2 ~~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-~ 80 (282)
T PRK05808 2 GIQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD-L 80 (282)
T ss_pred CccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-h
Confidence 3568999999999999999999999999999999876532 22333 223456554 4
Q ss_pred hcCCCEEEEecCchhH--HHHHhhccccccCCccEE-EEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCC
Q 044593 86 ELHPDVVLLSTSILST--QSVLKSIPFQRLKRSTLF-VDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENL 162 (335)
Q Consensus 86 ~~~aDvVIlavp~~~~--~~vl~~l~~~~l~~~~iV-vd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~ 162 (335)
++||+||+|+|.+.. .+++.++. +.++++++| +++++.+ ...+.+.++...+++++||+..+...+ +.
T Consensus 81 -~~aDlVi~av~e~~~~k~~~~~~l~-~~~~~~~il~s~ts~~~---~~~la~~~~~~~r~ig~h~~~P~~~~~----~v 151 (282)
T PRK05808 81 -KDADLVIEAATENMDLKKKIFAQLD-EIAKPEAILATNTSSLS---ITELAAATKRPDKVIGMHFFNPVPVMK----LV 151 (282)
T ss_pred -ccCCeeeecccccHHHHHHHHHHHH-hhCCCCcEEEECCCCCC---HHHHHHhhCCCcceEEeeccCCcccCc----cE
Confidence 799999999997653 68899985 678899988 4455543 346666665556799999999777542 22
Q ss_pred cceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHH
Q 044593 163 PFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKY 206 (335)
Q Consensus 163 ~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~ 206 (335)
. + +.++.++.+..+.+.++++.+|..++.+. +.+..+
T Consensus 152 e-v-----~~g~~t~~e~~~~~~~l~~~lGk~pv~~~-d~~g~i 188 (282)
T PRK05808 152 E-I-----IRGLATSDATHEAVEALAKKIGKTPVEVK-NAPGFV 188 (282)
T ss_pred E-E-----eCCCCCCHHHHHHHHHHHHHcCCeeEEec-CccChH
Confidence 1 2 23445667888999999999999988883 443333
No 48
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.64 E-value=8e-15 Score=137.33 Aligned_cols=153 Identities=15% Similarity=0.136 Sum_probs=112.1
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHh-----------CC-------------CceecChhhHhhc
Q 044593 32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ-----------LN-------------APFFADLNDLCEL 87 (335)
Q Consensus 32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~-----------~g-------------~~~~~~~~~~~~~ 87 (335)
+||+|||+|.||..+|..|.++|++|++||++++..+.+.+ .| +..+++..+.+ +
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~-~ 80 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAV-A 80 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhh-c
Confidence 58999999999999999999999999999999876654321 11 23456666666 8
Q ss_pred CCCEEEEecCchh--HHHHHhhccccccCCccEEE-EcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcc
Q 044593 88 HPDVVLLSTSILS--TQSVLKSIPFQRLKRSTLFV-DVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPF 164 (335)
Q Consensus 88 ~aDvVIlavp~~~--~~~vl~~l~~~~l~~~~iVv-d~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~ 164 (335)
+||+||.|+|.+. ...++.++. +.++++++|+ +++++. + ..+.+.+....++++.|+++.+.. +..+
T Consensus 81 ~aD~Vi~avpe~~~~k~~~~~~l~-~~~~~~~il~~~tSt~~--~-~~l~~~~~~~~r~~g~h~~~Pv~~------~~Lv 150 (288)
T PRK09260 81 DADLVIEAVPEKLELKKAVFETAD-AHAPAECYIATNTSTMS--P-TEIASFTKRPERVIAMHFFNPVHK------MKLV 150 (288)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHH-hhCCCCcEEEEcCCCCC--H-HHHHhhcCCcccEEEEecCCCccc------CceE
Confidence 9999999999886 346677774 5678888774 555542 2 456565554457899999953332 1112
Q ss_pred eecccccCCChhHHHHHHHHHHHHHhcCCEEEEeC
Q 044593 165 MYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMS 199 (335)
Q Consensus 165 i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~ 199 (335)
.+ ++++.++++.++.++++++.+|.+++++.
T Consensus 151 e~----v~g~~t~~~~~~~~~~~l~~lg~~~v~v~ 181 (288)
T PRK09260 151 EL----IRGLETSDETVQVAKEVAEQMGKETVVVN 181 (288)
T ss_pred EE----eCCCCCCHHHHHHHHHHHHHcCCeEEEec
Confidence 22 35555667889999999999999999885
No 49
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.62 E-value=1.7e-14 Score=135.53 Aligned_cols=154 Identities=13% Similarity=0.097 Sum_probs=112.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHH-----------HhCC-------------CceecChhhHh
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVR-----------QQLN-------------APFFADLNDLC 85 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a-----------~~~g-------------~~~~~~~~~~~ 85 (335)
..+||+|||+|.||.+||..|..+|++|++||++++..+.+ .+.| +...++. +.+
T Consensus 3 ~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~ 81 (295)
T PLN02545 3 EIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL-EEL 81 (295)
T ss_pred CcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH-HHh
Confidence 35689999999999999999999999999999998665421 1222 1233344 445
Q ss_pred hcCCCEEEEecC--chhHHHHHhhccccccCCccEEE-EcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCC
Q 044593 86 ELHPDVVLLSTS--ILSTQSVLKSIPFQRLKRSTLFV-DVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENL 162 (335)
Q Consensus 86 ~~~aDvVIlavp--~~~~~~vl~~l~~~~l~~~~iVv-d~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~ 162 (335)
++||+||.|+| +.....++.++. +.++++++|+ +++++ ....+.+.+....++++.||+..+...+
T Consensus 82 -~~aD~Vieav~e~~~~k~~v~~~l~-~~~~~~~il~s~tS~i---~~~~l~~~~~~~~r~~g~h~~~pp~~~~------ 150 (295)
T PLN02545 82 -RDADFIIEAIVESEDLKKKLFSELD-RICKPSAILASNTSSI---SITRLASATQRPQQVIGMHFMNPPPIMK------ 150 (295)
T ss_pred -CCCCEEEEcCccCHHHHHHHHHHHH-hhCCCCcEEEECCCCC---CHHHHHhhcCCCcceEEEeccCCcccCc------
Confidence 79999999999 555677888885 5688888886 56655 2355666665556899999999887431
Q ss_pred cceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeC
Q 044593 163 PFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMS 199 (335)
Q Consensus 163 ~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~ 199 (335)
.+.+ ++++.++.+.++.++++++.+|..++++.
T Consensus 151 lvei----v~g~~t~~e~~~~~~~ll~~lG~~~~~~~ 183 (295)
T PLN02545 151 LVEI----IRGADTSDEVFDATKALAERFGKTVVCSQ 183 (295)
T ss_pred eEEE----eCCCCCCHHHHHHHHHHHHHcCCeeEEec
Confidence 1122 23445567788999999999999888764
No 50
>PLN02858 fructose-bisphosphate aldolase
Probab=99.59 E-value=4.9e-14 Score=155.10 Aligned_cols=174 Identities=7% Similarity=0.019 Sum_probs=135.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHH---
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVL--- 105 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl--- 105 (335)
...|||+||+|.||..||..|.++||+|++|||+++..+...+.|.....++.+++ ++||+||+|+|... +.+++
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a-~~advVi~~l~~~~~v~~V~~g~ 81 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAA-KDAAALVVVLSHPDQVDDVFFGD 81 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHH-hcCCEEEEEcCChHHHHHHHhch
Confidence 35689999999999999999999999999999999888777888988888999988 89999999999875 56676
Q ss_pred hhccccccCCccEEEEcCCCCchHHHHHHhhCC-CC--CceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHH
Q 044593 106 KSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLP-QD--FDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVD 182 (335)
Q Consensus 106 ~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~-~~--~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~ 182 (335)
..+. +.+++|.+|+|++++.....+.+.+.+. .+ ..|+.+ |+.|...+. ..|...++. +++ ++.++
T Consensus 82 ~g~~-~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDa-PVsGg~~~A--~~G~L~imv----GG~---~~~~~ 150 (1378)
T PLN02858 82 EGAA-KGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDA-YVSKGMSDL--LNGKLMIIA----SGR---SDAIT 150 (1378)
T ss_pred hhHH-hcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEc-cCcCCHHHH--hcCCeEEEE----cCC---HHHHH
Confidence 2342 4578999999999988777766665543 44 568875 999877542 156544542 454 35688
Q ss_pred HHHHHHHhcCCEEEEe-ChHHHHHHHHHhhhhHH
Q 044593 183 KFLDVFAKEGCRMVEM-SCFDHDKYAAGSQFVTH 215 (335)
Q Consensus 183 ~v~~l~~~~G~~v~~~-~~~eHD~~~A~~s~lph 215 (335)
+++++|+.+|.+++++ .+.--...+.+++++-.
T Consensus 151 ~~~p~l~~~g~~i~~~~G~~G~g~~~KL~nN~l~ 184 (1378)
T PLN02858 151 RAQPFLSAMCQKLYTFEGEIGAGSKVKMVNELLE 184 (1378)
T ss_pred HHHHHHHHhcCceEEecCCCCHhHHHHHHHHHHH
Confidence 9999999999888764 76666677777766533
No 51
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=99.59 E-value=4.8e-13 Score=124.40 Aligned_cols=178 Identities=17% Similarity=0.229 Sum_probs=129.9
Q ss_pred CeEEEEcccHH--------------------HHHHHHHHHHcCCeEEEEcCCCCcH-----HHHHhCCCceecChhhHhh
Q 044593 32 LKIAVIGFGNF--------------------GQFLAKAFARHHHTLLVHSRSDHSP-----AVRQQLNAPFFADLNDLCE 86 (335)
Q Consensus 32 ~kI~IIG~G~m--------------------G~siA~~L~~~G~~V~~~dr~~~~~-----~~a~~~g~~~~~~~~~~~~ 86 (335)
|||.|.|+|+- |..+|..|.++||+|++|||++... +.+.+.|+...++..+++
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAA- 79 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAA- 79 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHH-
Confidence 78999999986 8899999999999999999986533 346677988888888888
Q ss_pred cCCCEEEEecCchh-HHHHHhhccccccCCccEEEEcCCCCchHHHH-HHhhC---CCCCceEeccccCCCCCcccccCC
Q 044593 87 LHPDVVLLSTSILS-TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNL-FLKYL---PQDFDILCTHPMFGPESAKSSWEN 161 (335)
Q Consensus 87 ~~aDvVIlavp~~~-~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~-l~~~l---~~~~~~v~~HPmaG~~~~~~~~~g 161 (335)
+++|+||+|+|... +.+++..+. +.+++|++|+|++++....... +++.+ ++++.+.+.||-+-|+... ++
T Consensus 80 a~ADVVIL~LPd~aaV~eVl~GLa-a~L~~GaIVID~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~~~~---~~ 155 (341)
T TIGR01724 80 KHGEIHVLFTPFGKGTFSIARTII-EHVPENAVICNTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPGTPQ---HG 155 (341)
T ss_pred hCCCEEEEecCCHHHHHHHHHHHH-hcCCCCCEEEECCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCCCCC---Cc
Confidence 89999999999886 568877764 5788999999999887654433 33323 3567899999988877632 11
Q ss_pred Ccceecc-cccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHhhhhHH
Q 044593 162 LPFMYDK-VRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTH 215 (335)
Q Consensus 162 ~~~i~~~-~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph 215 (335)
. +++.. +..+..-.+++.++++.++.++.|..++.++++--.-+.-+.|.++.
T Consensus 156 ~-~~~~~~~~~~~~~A~ee~i~~~~el~~~~~~~~~~~pa~l~~~v~Dm~s~vta 209 (341)
T TIGR01724 156 H-YVIGGKPTAGKEMATEEQISKCVELAKSTGKKAYVVPADVTSAVADMGSLVTA 209 (341)
T ss_pred e-eeeccccccccccCCHHHHHHHHHHHHHhCCCeeecchhhcchhhhHHHHHHH
Confidence 1 12211 11233335568899999999999999999997543333333443333
No 52
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=99.59 E-value=1.9e-14 Score=125.75 Aligned_cols=151 Identities=19% Similarity=0.240 Sum_probs=106.4
Q ss_pred eEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHh-----------CC-------------CceecChhhHhhcC
Q 044593 33 KIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ-----------LN-------------APFFADLNDLCELH 88 (335)
Q Consensus 33 kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~-----------~g-------------~~~~~~~~~~~~~~ 88 (335)
||+|||+|.||..||..+..+|++|.+||++++..+.+.+ .| +..+++++++ .+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~--~~ 78 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEA--VD 78 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGG--CT
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHH--hh
Confidence 7999999999999999999999999999999876543221 12 2346777776 48
Q ss_pred CCEEEEecCchh--HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCccee
Q 044593 89 PDVVLLSTSILS--TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMY 166 (335)
Q Consensus 89 aDvVIlavp~~~--~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~ 166 (335)
||+||-|+|.+. ..+++.++. ..+++++++...+|+ ..+..+.+.++..-+|++.|++..+... | ++
T Consensus 79 adlViEai~E~l~~K~~~~~~l~-~~~~~~~ilasnTSs--l~i~~la~~~~~p~R~ig~Hf~~P~~~~-------~-lV 147 (180)
T PF02737_consen 79 ADLVIEAIPEDLELKQELFAELD-EICPPDTILASNTSS--LSISELAAALSRPERFIGMHFFNPPHLM-------P-LV 147 (180)
T ss_dssp ESEEEE-S-SSHHHHHHHHHHHH-CCS-TTSEEEE--SS--S-HHHHHTTSSTGGGEEEEEE-SSTTT----------EE
T ss_pred hheehhhccccHHHHHHHHHHHH-HHhCCCceEEecCCC--CCHHHHHhccCcCceEEEEecccccccC-------c-eE
Confidence 999999999875 578889885 678899999988766 4557777777666689999998755532 2 22
Q ss_pred cccccCCChhHHHHHHHHHHHHHhcCCEEEEe
Q 044593 167 DKVRIGNDEERIKRVDKFLDVFAKEGCRMVEM 198 (335)
Q Consensus 167 ~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~ 198 (335)
+ +++++.++++.++.+.++++.+|..++.+
T Consensus 148 E--vv~~~~T~~~~~~~~~~~~~~~gk~pv~v 177 (180)
T PF02737_consen 148 E--VVPGPKTSPETVDRVRALLRSLGKTPVVV 177 (180)
T ss_dssp E--EEE-TTS-HHHHHHHHHHHHHTT-EEEEE
T ss_pred E--EeCCCCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 1 13455677889999999999999998876
No 53
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.58 E-value=6.2e-14 Score=131.56 Aligned_cols=154 Identities=14% Similarity=0.100 Sum_probs=110.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHh-----------CC-------------CceecChhhHh
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ-----------LN-------------APFFADLNDLC 85 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~-----------~g-------------~~~~~~~~~~~ 85 (335)
..+||+|||+|.||..+|..|..+|++|++||++++..+.+.+ .| +...++.++ +
T Consensus 3 ~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 81 (292)
T PRK07530 3 AIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLED-L 81 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHH-h
Confidence 4578999999999999999999999999999999876543221 23 234455554 4
Q ss_pred hcCCCEEEEecCch--hHHHHHhhccccccCCccEEE-EcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCC
Q 044593 86 ELHPDVVLLSTSIL--STQSVLKSIPFQRLKRSTLFV-DVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENL 162 (335)
Q Consensus 86 ~~~aDvVIlavp~~--~~~~vl~~l~~~~l~~~~iVv-d~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~ 162 (335)
.+||+||.|+|.+ ....+++++. +.++++++|+ ++++.. + ..+.+.+....++++.|++..+... .+.
T Consensus 82 -~~aD~Vieavpe~~~~k~~~~~~l~-~~~~~~~ii~s~ts~~~--~-s~la~~~~~~~r~~g~h~~~p~~~~----~~v 152 (292)
T PRK07530 82 -ADCDLVIEAATEDETVKRKIFAQLC-PVLKPEAILATNTSSIS--I-TRLASATDRPERFIGIHFMNPVPVM----KLV 152 (292)
T ss_pred -cCCCEEEEcCcCCHHHHHHHHHHHH-hhCCCCcEEEEcCCCCC--H-HHHHhhcCCcccEEEeeccCCcccC----ceE
Confidence 7999999999986 3467778884 5688898887 455442 2 3566655444579999998844422 111
Q ss_pred cceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeC
Q 044593 163 PFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMS 199 (335)
Q Consensus 163 ~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~ 199 (335)
.++ ....++++.++.+.++++.+|..++++.
T Consensus 153 -ei~-----~g~~t~~~~~~~~~~~~~~~gk~~v~~~ 183 (292)
T PRK07530 153 -ELI-----RGIATDEATFEAAKEFVTKLGKTITVAE 183 (292)
T ss_pred -EEe-----CCCCCCHHHHHHHHHHHHHcCCeEEEec
Confidence 122 2334556788999999999999888774
No 54
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.58 E-value=4.9e-14 Score=132.20 Aligned_cols=154 Identities=14% Similarity=0.080 Sum_probs=114.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHh--------------CCC-------------ceecChhh
Q 044593 31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ--------------LNA-------------PFFADLND 83 (335)
Q Consensus 31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~--------------~g~-------------~~~~~~~~ 83 (335)
..||+|||+|.||..+|..|+.+|++|++||++++..+.+.+ .|. ...++. +
T Consensus 3 i~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 81 (291)
T PRK06035 3 IKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-E 81 (291)
T ss_pred CcEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-H
Confidence 468999999999999999999999999999999876543211 121 133444 3
Q ss_pred HhhcCCCEEEEecCchh--HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCC
Q 044593 84 LCELHPDVVLLSTSILS--TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWEN 161 (335)
Q Consensus 84 ~~~~~aDvVIlavp~~~--~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g 161 (335)
.+ ++||+||.|+|.+. ..++++++. +.++++++|+.++|. .....+.+.+....+|++.||+..+...+ .
T Consensus 82 ~~-~~aDlVieav~e~~~~k~~~~~~l~-~~~~~~~il~S~tsg--~~~~~la~~~~~~~r~ig~hf~~P~~~~~----~ 153 (291)
T PRK06035 82 SL-SDADFIVEAVPEKLDLKRKVFAELE-RNVSPETIIASNTSG--IMIAEIATALERKDRFIGMHWFNPAPVMK----L 153 (291)
T ss_pred Hh-CCCCEEEEcCcCcHHHHHHHHHHHH-hhCCCCeEEEEcCCC--CCHHHHHhhcCCcccEEEEecCCCcccCc----c
Confidence 45 78999999999886 577888885 567888888765443 55677777766556899999988665431 1
Q ss_pred CcceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeC
Q 044593 162 LPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMS 199 (335)
Q Consensus 162 ~~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~ 199 (335)
. -++ .++.++.+.++.+.++++.+|..++.+.
T Consensus 154 v-Ev~-----~g~~T~~e~~~~~~~~~~~lgk~~v~v~ 185 (291)
T PRK06035 154 I-EVV-----RAALTSEETFNTTVELSKKIGKIPIEVA 185 (291)
T ss_pred E-EEe-----CCCCCCHHHHHHHHHHHHHcCCeEEEeC
Confidence 1 121 2344567788999999999999999885
No 55
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.58 E-value=3.2e-14 Score=135.02 Aligned_cols=161 Identities=22% Similarity=0.246 Sum_probs=109.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhC--------------CCceecChhhHhhcCCCEEEEec
Q 044593 31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQL--------------NAPFFADLNDLCELHPDVVLLST 96 (335)
Q Consensus 31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~--------------g~~~~~~~~~~~~~~aDvVIlav 96 (335)
||||+|||+|.||+.+|..|.++|++|++|+|+++..+...+. ++....+..+.+ +++|+||+|+
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~D~vi~~v 79 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEAL-ADADLILVAV 79 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHH-hCCCEEEEeC
Confidence 4799999999999999999999999999999998766544443 233455666666 7899999999
Q ss_pred CchhHHHHHhhccccccCCccEEEEcC-CCCch----HHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceeccccc
Q 044593 97 SILSTQSVLKSIPFQRLKRSTLFVDVL-SVKEF----PRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRI 171 (335)
Q Consensus 97 p~~~~~~vl~~l~~~~l~~~~iVvd~~-SvK~~----~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~ 171 (335)
|...+.+++.++. +.++++++|++++ ++... ..+.+.+.++.. ....++.||........+.+..+. +
T Consensus 80 ~~~~~~~v~~~l~-~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~---~~~~~~~~P~~~~~~~~g~~~~~~---~ 152 (325)
T PRK00094 80 PSQALREVLKQLK-PLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDL---APIAVLSGPSFAKEVARGLPTAVV---I 152 (325)
T ss_pred CHHHHHHHHHHHH-hhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCC---CceEEEECccHHHHHHcCCCcEEE---E
Confidence 9999999999885 5778899999886 33221 234455544421 112344555543222234332221 1
Q ss_pred CCChhHHHHHHHHHHHHHhcCCEEEEeChH
Q 044593 172 GNDEERIKRVDKFLDVFAKEGCRMVEMSCF 201 (335)
Q Consensus 172 ~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~ 201 (335)
++. +.+.++.+.++|+..|.+++..+.-
T Consensus 153 ~~~--~~~~~~~~~~~l~~~~~~~~~~~d~ 180 (325)
T PRK00094 153 AST--DEELAERVQELFHSPYFRVYTNTDV 180 (325)
T ss_pred EeC--CHHHHHHHHHHhCCCCEEEEecCCc
Confidence 221 3467788999999999887666443
No 56
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.57 E-value=1.5e-13 Score=130.10 Aligned_cols=159 Identities=16% Similarity=0.135 Sum_probs=115.7
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCC-CcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHH-
Q 044593 28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSD-HSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVL- 105 (335)
Q Consensus 28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~-~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl- 105 (335)
..+.++|+|||+|.||.++|..|+..|++|++++++. ...+.+.+.|+... +..+++ ++||+|++++|+.....++
T Consensus 14 ~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~-s~~eaa-~~ADVVvLaVPd~~~~~V~~ 91 (330)
T PRK05479 14 LIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVL-TVAEAA-KWADVIMILLPDEVQAEVYE 91 (330)
T ss_pred hhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeC-CHHHHH-hcCCEEEEcCCHHHHHHHHH
Confidence 3467899999999999999999999999998887764 45566777787654 777777 8999999999999888888
Q ss_pred hhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccc---cCCCcceecccccCCChhHHHHHH
Q 044593 106 KSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSS---WENLPFMYDKVRIGNDEERIKRVD 182 (335)
Q Consensus 106 ~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~---~~g~~~i~~~~~~~~~~~~~~~~~ 182 (335)
+++. +.++++++|+-+.+.. +.......+.+.+++...|......-... -.|.|.++. +..+ .+.+..+
T Consensus 92 ~~I~-~~Lk~g~iL~~a~G~~---i~~~~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~a---v~~d-~t~~a~~ 163 (330)
T PRK05479 92 EEIE-PNLKEGAALAFAHGFN---IHFGQIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCLIA---VHQD-ASGNAKD 163 (330)
T ss_pred HHHH-hcCCCCCEEEECCCCC---hhhceeccCCCCcEEEeCCCCCchhhhhhhhcCCCceEEEE---ecCC-CCHHHHH
Confidence 6774 6789999886665542 24444455667788888887655511011 156666652 1122 2345678
Q ss_pred HHHHHHHhcCCEEE
Q 044593 183 KFLDVFAKEGCRMV 196 (335)
Q Consensus 183 ~v~~l~~~~G~~v~ 196 (335)
.+..+++.+|+...
T Consensus 164 ~a~~l~~aiG~~~~ 177 (330)
T PRK05479 164 LALAYAKGIGGTRA 177 (330)
T ss_pred HHHHHHHHcCCCcc
Confidence 88999999998743
No 57
>PLN02858 fructose-bisphosphate aldolase
Probab=99.57 E-value=1.5e-13 Score=151.25 Aligned_cols=172 Identities=10% Similarity=0.028 Sum_probs=130.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCc-hhHHHHHh--
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSI-LSTQSVLK-- 106 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~-~~~~~vl~-- 106 (335)
..++|||||+|.||..||..|.+.|++|++|||+++..+...+.|.....++.+++ ++||+||+|+|. ..+.+++.
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~-~~aDvVi~~V~~~~~v~~Vl~g~ 401 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVA-KDVDVLVIMVANEVQAENVLFGD 401 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHH-hcCCEEEEecCChHHHHHHHhch
Confidence 45899999999999999999999999999999998877667777877677888887 899999999994 45677763
Q ss_pred -hccccccCCccEEEEcCCCCchHHHHHHhhCC---CCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHH
Q 044593 107 -SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLP---QDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVD 182 (335)
Q Consensus 107 -~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~---~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~ 182 (335)
.+. +.+++|++|+|++++.....+.+.+.+. .+..|+.+ |+.|..... ..|...++. +++ ++.++
T Consensus 402 ~g~~-~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDA-PVsGg~~~A--~~G~L~imv----gG~---~~~~~ 470 (1378)
T PLN02858 402 LGAV-SALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDA-PVSGGVKRA--AMGTLTIMA----SGT---DEALK 470 (1378)
T ss_pred hhHH-hcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEc-cCCCChhhh--hcCCceEEE----ECC---HHHHH
Confidence 232 4578999999999987766666655443 46778875 888877542 255544543 444 35788
Q ss_pred HHHHHHHhcCCEEEE-eChHHHHHHHHHhhhh
Q 044593 183 KFLDVFAKEGCRMVE-MSCFDHDKYAAGSQFV 213 (335)
Q Consensus 183 ~v~~l~~~~G~~v~~-~~~~eHD~~~A~~s~l 213 (335)
+++++|+.+|.++++ .++......+.+++++
T Consensus 471 ~~~plL~~lg~~i~~~~g~~G~a~~~KL~nN~ 502 (1378)
T PLN02858 471 SAGSVLSALSEKLYVIKGGCGAGSGVKMVNQL 502 (1378)
T ss_pred HHHHHHHHHhCcEEEeCCCCCHHHHHHHHHHH
Confidence 999999999988876 4555556677776544
No 58
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=99.55 E-value=6.6e-13 Score=125.54 Aligned_cols=184 Identities=14% Similarity=0.052 Sum_probs=132.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCC-CCcHHHHHhCCCceecChhhHhhcCCCEEEEecCch-hHHHHHhh
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRS-DHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSIL-STQSVLKS 107 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~-~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~-~~~~vl~~ 107 (335)
+.+||+|||+|+||.++|..|.+.|++|+++++. ++..+.+.+.|+... +..+++ +++|+|++|+|+. ....++++
T Consensus 2 ~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~-s~~ea~-~~ADiVvLaVpp~~~~~~v~~e 79 (314)
T TIGR00465 2 KGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVG-TVEEAI-PQADLIMNLLPDEVQHEVYEAE 79 (314)
T ss_pred CcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEEC-CHHHHH-hcCCEEEEeCCcHhHHHHHHHH
Confidence 4689999999999999999999999988765544 445555667788654 567776 7999999999999 66666777
Q ss_pred ccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCC-------cccccCCCcceecccccCCChhHHHH
Q 044593 108 IPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPES-------AKSSWENLPFMYDKVRIGNDEERIKR 180 (335)
Q Consensus 108 l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~-------~~~~~~g~~~i~~~~~~~~~~~~~~~ 180 (335)
+. +.++++.+|.-..++ .+..++..+|.+.+++...|...... + .|.+.++.. ..+ .+.+.
T Consensus 80 i~-~~l~~g~iVs~aaG~---~i~~~~~~~~~~~~VvrvmPn~p~~~vr~~~~~G----~G~~~l~a~---~~~-~~~~~ 147 (314)
T TIGR00465 80 IQ-PLLKEGKTLGFSHGF---NIHFVQIVPPKDVDVVMVAPKGPGTLVREEYKEG----FGVPTLIAV---EQD-PTGEA 147 (314)
T ss_pred HH-hhCCCCcEEEEeCCc---cHhhccccCCCCCcEEEECCCCCcHHHHHHhhcC----CCeeEEEEe---cCC-CCHHH
Confidence 74 567778654444444 34666667777778888889876652 3 566655421 122 23456
Q ss_pred HHHHHHHHHhcCCE-------E--EEeChHHHHHHHHHhhhhHHHHHH---HHHHcCCC
Q 044593 181 VDKFLDVFAKEGCR-------M--VEMSCFDHDKYAAGSQFVTHTMGR---VLERFGVE 227 (335)
Q Consensus 181 ~~~v~~l~~~~G~~-------v--~~~~~~eHD~~~A~~s~lph~la~---aL~~~~~~ 227 (335)
.+.+..+++.+|.. . .+++.+.-|..++++...|.++-. +|++.|.+
T Consensus 148 ~~~~~~~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa~v~~~~ealv~~G~~ 206 (314)
T TIGR00465 148 MAIALAYAKAIGGGRAGVLETTFKEETESDLFGEQAVLCGGLTALIKAGFDTLVEAGYQ 206 (314)
T ss_pred HHHHHHHHHHcCCCccceeechhHhhhhHHhcCcchhHHhHHHHHHHHHHHHHHHcCCC
Confidence 68889999999975 3 266677888899999889887643 45555654
No 59
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.55 E-value=1.3e-13 Score=135.44 Aligned_cols=175 Identities=17% Similarity=0.129 Sum_probs=116.9
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHh-------------------CC-CceecChhhHhhcCCCE
Q 044593 32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ-------------------LN-APFFADLNDLCELHPDV 91 (335)
Q Consensus 32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~-------------------~g-~~~~~~~~~~~~~~aDv 91 (335)
|||+|||+|.||..+|..|.++||+|++||++++..+...+ .| +..+++..+++ +++|+
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~-~~adv 79 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAI-RDADV 79 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHH-hhCCE
Confidence 68999999999999999999999999999999876653332 23 34556667766 78999
Q ss_pred EEEecCch----------hHHHHHhhccccccCCccEEEEcCCCCchHHHHHH-hhCCC------CC-ceEeccccCCCC
Q 044593 92 VLLSTSIL----------STQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFL-KYLPQ------DF-DILCTHPMFGPE 153 (335)
Q Consensus 92 VIlavp~~----------~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~-~~l~~------~~-~~v~~HPmaG~~ 153 (335)
||+|+|.. .+..+++.+. +.++++++|++.+++.....+.+. ..+.. +. ..+..+|.+..+
T Consensus 80 vii~vpt~~~~~~~~d~~~v~~~~~~i~-~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~~~~ 158 (411)
T TIGR03026 80 IIICVPTPLKEDGSPDLSYVESAAETIA-KHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNPEFLRE 158 (411)
T ss_pred EEEEeCCCCCCCCCcChHHHHHHHHHHH-HhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECCCcCCC
Confidence 99999976 3677777774 568899999998876544433332 22111 12 245667765544
Q ss_pred Ccc-cccCCCcceecccccCCChhHHHHHHHHHHHHHhcC-CEEEEeChHHHHHHHHHhhhhHH
Q 044593 154 SAK-SSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEG-CRMVEMSCFDHDKYAAGSQFVTH 215 (335)
Q Consensus 154 ~~~-~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G-~~v~~~~~~eHD~~~A~~s~lph 215 (335)
... ..+...+.++ ++. +++..+.++++++.++ ..++.++..+.-.++.++.+.-+
T Consensus 159 G~~~~~~~~~~~iv----~G~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~ 215 (411)
T TIGR03026 159 GNAVHDLLNPDRIV----GGE---TEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFR 215 (411)
T ss_pred CChhhhhcCCCEEE----EeC---CHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHH
Confidence 210 0011111222 243 3467788999999997 45666666666777777765554
No 60
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.55 E-value=1.1e-13 Score=129.59 Aligned_cols=209 Identities=19% Similarity=0.269 Sum_probs=144.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhC--------C------CceecChhhHhhcCCCEEEEec
Q 044593 31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQL--------N------APFFADLNDLCELHPDVVLLST 96 (335)
Q Consensus 31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~--------g------~~~~~~~~~~~~~~aDvVIlav 96 (335)
++||+|||.|.+|+++|..|.++||+|.+|.|+++..+...+. | +..++|+.+++ +++|+|++++
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~-~~ad~iv~av 79 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEAL-DGADIIVIAV 79 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHH-hcCCEEEEEC
Confidence 4799999999999999999999999999999998766544332 2 23467888887 7899999999
Q ss_pred CchhHHHHHhhccccccCCccEEEEcC-----CCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceeccccc
Q 044593 97 SILSTQSVLKSIPFQRLKRSTLFVDVL-----SVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRI 171 (335)
Q Consensus 97 p~~~~~~vl~~l~~~~l~~~~iVvd~~-----SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~ 171 (335)
|...+.++++++. +.++++.+++.++ .+...+.+.+++.++... ++ -+.||..+.+...+.|..++ +
T Consensus 80 Ps~~~r~v~~~l~-~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~--~~--vLSGPs~A~EVa~g~pta~~---v 151 (329)
T COG0240 80 PSQALREVLRQLK-PLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNP--IA--VLSGPSFAKEVAQGLPTAVV---V 151 (329)
T ss_pred ChHHHHHHHHHHh-hhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCe--EE--EEECccHHHHHhcCCCcEEE---E
Confidence 9999999999995 7888999998874 223345577777777432 22 25688877777788877654 2
Q ss_pred CCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHhhhhHHHHHHHH--H-HcCCCC---CCCCCcchhhHHHHHHH
Q 044593 172 GNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVL--E-RFGVES---SPINTKGYETLLDLVDN 245 (335)
Q Consensus 172 ~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la~aL--~-~~~~~~---~~~~~~gf~~~~rl~~~ 245 (335)
.+ .+.+..++++++|..--++++..+.-.- +.+...+--++|.+. . ..+... ..+-+.|+..++|+...
T Consensus 152 as--~d~~~a~~v~~~f~~~~Frvy~~~Dv~G---veigGAlKNViAIA~Gi~dGlg~G~NakaalitrGL~Em~rlg~~ 226 (329)
T COG0240 152 AS--NDQEAAEKVQALFSSPYFRVYTSTDVIG---VEIGGALKNVIAIAAGIADGLGLGDNAKAALITRGLAEMTRLGVA 226 (329)
T ss_pred ec--CCHHHHHHHHHHhCCCcEEEEecCchhh---hHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHhHHHHHHHHHHH
Confidence 32 2356778899999998888887762211 223333434443322 1 111111 13557888999998776
Q ss_pred hhCCChHhH
Q 044593 246 TKGDSFDLY 254 (335)
Q Consensus 246 ia~~~~~lw 254 (335)
+ +..|+.+
T Consensus 227 l-G~~~~T~ 234 (329)
T COG0240 227 L-GAKPETF 234 (329)
T ss_pred h-CCCcchh
Confidence 4 4445533
No 61
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.54 E-value=1e-12 Score=129.10 Aligned_cols=235 Identities=13% Similarity=0.046 Sum_probs=141.9
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce--ecChhhH---------------hhcCCCE
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF--FADLNDL---------------CELHPDV 91 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~--~~~~~~~---------------~~~~aDv 91 (335)
|.+|||+|||+|.||..+|..|+++|++|++||++++..+.. +.|... ...++++ . ++||+
T Consensus 1 m~~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l-~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~-~~aDv 78 (415)
T PRK11064 1 MSFETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTI-NRGEIHIVEPDLDMVVKTAVEGGYLRATTTP-EPADA 78 (415)
T ss_pred CCccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHH-HCCCCCcCCCCHHHHHHHHhhcCceeeeccc-ccCCE
Confidence 456899999999999999999999999999999999877643 333221 1111211 2 47999
Q ss_pred EEEecCch----------hHHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCC-CC-------------ceEecc
Q 044593 92 VLLSTSIL----------STQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQ-DF-------------DILCTH 147 (335)
Q Consensus 92 VIlavp~~----------~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~-~~-------------~~v~~H 147 (335)
||+|+|.. .+..+++.+. +.+++|++|++.+++.....+.+...+.. +. .++...
T Consensus 79 vii~vptp~~~~~~~dl~~v~~~~~~i~-~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v~~~ 157 (415)
T PRK11064 79 FLIAVPTPFKGDHEPDLTYVEAAAKSIA-PVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADINIAYC 157 (415)
T ss_pred EEEEcCCCCCCCCCcChHHHHHHHHHHH-HhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCeEEEEC
Confidence 99999984 6777888885 67899999999988876655555432211 00 123333
Q ss_pred c--cCCCCCcccccCCCcceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHhhhhHHHHHHHH----
Q 044593 148 P--MFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVL---- 221 (335)
Q Consensus 148 P--maG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la~aL---- 221 (335)
| +.+.....+ .+.+..+ +++. +++..+.++++++.++..++.++..+.-+++.++.+.-..+-.++
T Consensus 158 PE~~~~G~~~~~--~~~~~~v----vgG~--~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~ 229 (415)
T PRK11064 158 PERVLPGQVMVE--LIKNDRV----IGGM--TPVCSARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDVNIAFANEL 229 (415)
T ss_pred CCccCCCChhhh--hcCCCEE----EEeC--CHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 111110000 1122222 2331 245678889999999877777777777788888776655432111
Q ss_pred ----HHcCCCC---------C-C----CCCcch------hhHHHHHHHhhCCChHhHHHHHhhCHhH-HHHHHHHHHHH
Q 044593 222 ----ERFGVES---------S-P----INTKGY------ETLLDLVDNTKGDSFDLYYGLFMYNKNS-LEQLQRLEMAF 275 (335)
Q Consensus 222 ----~~~~~~~---------~-~----~~~~gf------~~~~rl~~~ia~~~~~lw~~I~~~N~~~-~~~l~~~~~~l 275 (335)
.+.++|. . . ..++|| +|..-|+.. ++.++.||......|..- ...++.+.+.|
T Consensus 230 ~~lae~~GiD~~~v~~~~~~~~ri~~l~pG~G~GG~ClpkD~~~L~~~-~~~~~~l~~~a~~~N~~~~~~v~~~~~~~l 307 (415)
T PRK11064 230 SLICADQGINVWELIRLANRHPRVNILQPGPGVGGHCIAVDPWFIVAQ-NPQQARLIRTAREVNDGKPHWVIDQVKAAV 307 (415)
T ss_pred HHHHHHhCCCHHHHHHHhccCCCcccCCCCCCCCCccccccHHHHHHh-cCCccHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 2334431 0 1 112322 344444332 555678888877777654 23444444333
No 62
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.52 E-value=5.8e-13 Score=124.71 Aligned_cols=154 Identities=14% Similarity=0.124 Sum_probs=112.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHH-----------HHhCCC-------------ceecChhhHhh
Q 044593 31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAV-----------RQQLNA-------------PFFADLNDLCE 86 (335)
Q Consensus 31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~-----------a~~~g~-------------~~~~~~~~~~~ 86 (335)
..||+|||+|.||..||..+..+|++|++||++++..+. +.+.|. ..+++.++ +
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-~- 82 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGD-F- 82 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHH-h-
Confidence 458999999999999999999999999999999887554 222332 24566654 4
Q ss_pred cCCCEEEEecCchh--HHHHHhhcccccc-CCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCc
Q 044593 87 LHPDVVLLSTSILS--TQSVLKSIPFQRL-KRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLP 163 (335)
Q Consensus 87 ~~aDvVIlavp~~~--~~~vl~~l~~~~l-~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~ 163 (335)
++||+||-|+|.+. ...++.++. ..+ ++++++++.+|+ .+...+........++++.|+...+...+ ..
T Consensus 83 ~~~d~ViEav~E~~~~K~~l~~~l~-~~~~~~~~il~snTS~--~~~~~la~~~~~~~r~~g~hf~~P~~~~~-----lv 154 (286)
T PRK07819 83 ADRQLVIEAVVEDEAVKTEIFAELD-KVVTDPDAVLASNTSS--IPIMKLAAATKRPGRVLGLHFFNPVPVLP-----LV 154 (286)
T ss_pred CCCCEEEEecccCHHHHHHHHHHHH-HhhCCCCcEEEECCCC--CCHHHHHhhcCCCccEEEEecCCCcccCc-----eE
Confidence 79999999999885 356667774 455 789999988777 33455555555455799999888655431 11
Q ss_pred ceecccccCCChhHHHHHHHHHHHHH-hcCCEEEEeC
Q 044593 164 FMYDKVRIGNDEERIKRVDKFLDVFA-KEGCRMVEMS 199 (335)
Q Consensus 164 ~i~~~~~~~~~~~~~~~~~~v~~l~~-~~G~~v~~~~ 199 (335)
-++ ....++++.++.+..++. .+|..++.+.
T Consensus 155 Elv-----~~~~T~~~~~~~~~~~~~~~lgk~pv~v~ 186 (286)
T PRK07819 155 ELV-----PTLVTSEATVARAEEFASDVLGKQVVRAQ 186 (286)
T ss_pred EEe-----CCCCCCHHHHHHHHHHHHHhCCCCceEec
Confidence 122 234456788999999988 5998888873
No 63
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.46 E-value=4.8e-13 Score=126.51 Aligned_cols=145 Identities=22% Similarity=0.326 Sum_probs=100.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhhcc
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSIP 109 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~l~ 109 (335)
..|||+|||+|.||+++|..|.++|++|++|+|++. .++.+++ +++|+||+|+|...+.++++.+.
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-------------~~~~~~~-~~advvi~~vp~~~~~~v~~~l~ 68 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-------------LSLAAVL-ADADVIVSAVSMKGVRPVAEQVQ 68 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-------------CCHHHHH-hcCCEEEEECChHHHHHHHHHHH
Confidence 458999999999999999999999999999999864 3456666 78999999999998999998884
Q ss_pred ccccCCccEEEEcCC-CCc----hHHHHHHhhCCCCCceEecccc---CCCCCcccccCCCcceecccccCCChhHHHHH
Q 044593 110 FQRLKRSTLFVDVLS-VKE----FPRNLFLKYLPQDFDILCTHPM---FGPESAKSSWENLPFMYDKVRIGNDEERIKRV 181 (335)
Q Consensus 110 ~~~l~~~~iVvd~~S-vK~----~~~~~l~~~l~~~~~~v~~HPm---aG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~ 181 (335)
...++++++|++++. ... ...+.+...+ ..+|+ .||..+.+...+.+.... +++.+ .+..
T Consensus 69 ~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~-------~~~~v~~i~gp~~a~ei~~~~~~~~~--~ag~~---~~~~ 136 (308)
T PRK14619 69 ALNLPPETIIVTATKGLDPETTRTPSQIWQAAF-------PNHPVVVLSGPNLSKEIQQGLPAATV--VASRD---LAAA 136 (308)
T ss_pred HhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHc-------CCCceEEEECCCcHHHHhcCCCeEEE--EEeCC---HHHH
Confidence 213678899999753 211 1222233222 23454 455543332334332221 12333 4577
Q ss_pred HHHHHHHHhcCCEEEEeCh
Q 044593 182 DKFLDVFAKEGCRMVEMSC 200 (335)
Q Consensus 182 ~~v~~l~~~~G~~v~~~~~ 200 (335)
+.++++|...|.+++..+.
T Consensus 137 ~~v~~ll~~~~~~~~~~~d 155 (308)
T PRK14619 137 ETVQQIFSSERFRVYTNSD 155 (308)
T ss_pred HHHHHHhCCCcEEEEecCC
Confidence 8899999999998886654
No 64
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=99.46 E-value=5e-14 Score=115.77 Aligned_cols=115 Identities=23% Similarity=0.276 Sum_probs=76.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEE-cCCCCcHHHHHh-CCCceecChhhHhhcCCCEEEEecCchhHHHHHh
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVH-SRSDHSPAVRQQ-LNAPFFADLNDLCELHPDVVLLSTSILSTQSVLK 106 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~-dr~~~~~~~a~~-~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~ 106 (335)
...+||+|||+|++|..++++|.++||.|.++ .|++++.+.+.. .+-....++.+++ .++|++|+|||++.+.++.+
T Consensus 8 ~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~-~~aDlv~iavpDdaI~~va~ 86 (127)
T PF10727_consen 8 AARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEIL-RDADLVFIAVPDDAIAEVAE 86 (127)
T ss_dssp ----EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGG-CC-SEEEE-S-CCHHHHHHH
T ss_pred CCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCccccccccccccccccccccccc-ccCCEEEEEechHHHHHHHH
Confidence 45789999999999999999999999998765 788766654544 3434445666777 89999999999999999999
Q ss_pred hccccc--cCCccEEEEcCCCCc-hHHHHHHhhCCCCCceEeccc
Q 044593 107 SIPFQR--LKRSTLFVDVLSVKE-FPRNLFLKYLPQDFDILCTHP 148 (335)
Q Consensus 107 ~l~~~~--l~~~~iVvd~~SvK~-~~~~~l~~~l~~~~~~v~~HP 148 (335)
+|. .. ++++++|+++++... .+++.+++ .+....+.||
T Consensus 87 ~La-~~~~~~~g~iVvHtSGa~~~~vL~p~~~---~Ga~~~s~HP 127 (127)
T PF10727_consen 87 QLA-QYGAWRPGQIVVHTSGALGSDVLAPARE---RGAIVASLHP 127 (127)
T ss_dssp HHH-CC--S-TT-EEEES-SS--GGGGHHHHH---TT-EEEEEEE
T ss_pred HHH-HhccCCCCcEEEECCCCChHHhhhhHHH---CCCeEEEeCc
Confidence 995 34 679999999976543 33444433 4567788888
No 65
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.45 E-value=1.7e-12 Score=116.97 Aligned_cols=165 Identities=17% Similarity=0.201 Sum_probs=113.1
Q ss_pred CeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHh--------CCCc---eecChhhHhhcCCCEEEEecCch
Q 044593 32 LKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ--------LNAP---FFADLNDLCELHPDVVLLSTSIL 99 (335)
Q Consensus 32 ~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~--------~g~~---~~~~~~~~~~~~aDvVIlavp~~ 99 (335)
|||+||| +|.||++++..|.++|++|++++|+++..+...+ .|+. ...+..+.+ .++|+||+|+|..
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~-~~aDvVilavp~~ 79 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAA-KRADVVILAVPWD 79 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHH-hcCCEEEEECCHH
Confidence 6899997 8999999999999999999999999866533222 1221 123445566 7899999999999
Q ss_pred hHHHHHhhccccccCCccEEEEcCCCCch---------------HHHHHHhhCCCCCceEeccccCCCCCccccc--CCC
Q 044593 100 STQSVLKSIPFQRLKRSTLFVDVLSVKEF---------------PRNLFLKYLPQDFDILCTHPMFGPESAKSSW--ENL 162 (335)
Q Consensus 100 ~~~~vl~~l~~~~l~~~~iVvd~~SvK~~---------------~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~--~g~ 162 (335)
.+.++++++. +.++ +++|+|++..-.. ..+.+++.+|.+.++|.+.|..+.+...... .+.
T Consensus 80 ~~~~~l~~l~-~~l~-~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~VVka~~~~~a~~~~~~~~~~~~ 157 (219)
T TIGR01915 80 HVLKTLESLR-DELS-GKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPETSRVVAAFHNLSAVLLQDVDDEVDC 157 (219)
T ss_pred HHHHHHHHHH-Hhcc-CCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCCCeEeeccccCCHHHhcCCCCCCCC
Confidence 9999998884 4454 4889998532211 1255777777546788887765544321100 122
Q ss_pred cceecccccCCChhHHHHHHHHHHHHHhc-CCEEEEeChHHHHHH
Q 044593 163 PFMYDKVRIGNDEERIKRVDKFLDVFAKE-GCRMVEMSCFDHDKY 206 (335)
Q Consensus 163 ~~i~~~~~~~~~~~~~~~~~~v~~l~~~~-G~~v~~~~~~eHD~~ 206 (335)
..++ ++.+ +++.+.+.+|.+.+ |++++.+.+-.+.+.
T Consensus 158 ~~~v----~Gdd---~~ak~~v~~L~~~~~G~~~vd~G~l~~a~~ 195 (219)
T TIGR01915 158 DVLV----CGDD---EEAKEVVAELAGRIDGLRALDAGPLENAAI 195 (219)
T ss_pred CEEE----ECCC---HHHHHHHHHHHHhcCCCCcccCCchhhHHH
Confidence 2222 3444 33567788999999 999999887666543
No 66
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.43 E-value=2.6e-12 Score=128.89 Aligned_cols=155 Identities=14% Similarity=0.088 Sum_probs=112.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHH-----------HhCC-------------CceecChhhHh
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVR-----------QQLN-------------APFFADLNDLC 85 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a-----------~~~g-------------~~~~~~~~~~~ 85 (335)
..+||+|||+|.||..||..+..+|++|++||++++..+.+ .+.| +..++++.++
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l- 82 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHAL- 82 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHh-
Confidence 45689999999999999999999999999999998766432 2234 2346677654
Q ss_pred hcCCCEEEEecCchh--HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCc
Q 044593 86 ELHPDVVLLSTSILS--TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLP 163 (335)
Q Consensus 86 ~~~aDvVIlavp~~~--~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~ 163 (335)
.+||+||.|+|.+. ...++.++. ..++++++|...+|+- ....+.+.+....++++.|.+..+... ...
T Consensus 83 -~~aDlVIEav~E~~~vK~~vf~~l~-~~~~~~~IlasnTStl--~i~~iA~~~~~p~r~~G~HFf~Papv~-----~Lv 153 (503)
T TIGR02279 83 -ADAGLVIEAIVENLEVKKALFAQLE-ELCPADTIIASNTSSL--SITAIAAGLARPERVAGLHFFNPAPVM-----ALV 153 (503)
T ss_pred -CCCCEEEEcCcCcHHHHHHHHHHHH-hhCCCCeEEEECCCCC--CHHHHHHhcCcccceEEEeccCccccC-----ceE
Confidence 68999999999864 456677774 5677888877544442 224555556555579999977744432 111
Q ss_pred ceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeC
Q 044593 164 FMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMS 199 (335)
Q Consensus 164 ~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~ 199 (335)
. +++++.++++.++.+.++++.+|..++++.
T Consensus 154 -E----vv~g~~Ts~e~~~~~~~l~~~lgk~pv~v~ 184 (503)
T TIGR02279 154 -E----VVSGLATAAEVAEQLYETALAWGKQPVHCH 184 (503)
T ss_pred -E----EeCCCCCCHHHHHHHHHHHHHcCCeeeEeC
Confidence 1 135556677889999999999999998885
No 67
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.43 E-value=1.1e-12 Score=125.21 Aligned_cols=155 Identities=15% Similarity=0.135 Sum_probs=100.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhC--------C------CceecChhhHhhcCCCEEEEec
Q 044593 31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQL--------N------APFFADLNDLCELHPDVVLLST 96 (335)
Q Consensus 31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~--------g------~~~~~~~~~~~~~~aDvVIlav 96 (335)
+|||+|||+|.||+.+|..|.++|++|++|+|+++..+..... | +..++++.+.+ +++|+||+|+
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~-~~aD~Vi~~v 82 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEAL-AGADFAVVAV 82 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHH-cCCCEEEEEC
Confidence 5799999999999999999999999999999987665444332 3 23455677766 7899999999
Q ss_pred CchhHHHHHhhccccccCCccEEEEcCC-CCch--HHHHHHhhCC----CCCceEeccccCCCCCcccccCCCcceeccc
Q 044593 97 SILSTQSVLKSIPFQRLKRSTLFVDVLS-VKEF--PRNLFLKYLP----QDFDILCTHPMFGPESAKSSWENLPFMYDKV 169 (335)
Q Consensus 97 p~~~~~~vl~~l~~~~l~~~~iVvd~~S-vK~~--~~~~l~~~l~----~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~ 169 (335)
|...+.++++.+ +++.+++++++ .... ....+.+.++ .+..+ +.||....+...+.+.+..
T Consensus 83 ~~~~~~~v~~~l-----~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~-----~~gP~~a~~~~~~~~~~~~-- 150 (328)
T PRK14618 83 PSKALRETLAGL-----PRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAV-----LSGPNHAEEIARFLPAATV-- 150 (328)
T ss_pred chHHHHHHHHhc-----CcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEE-----EECccHHHHHHcCCCeEEE--
Confidence 999988888655 35678888755 2211 0223333322 12222 3344443222233332221
Q ss_pred ccCCChhHHHHHHHHHHHHHhcCCEEEEeChH
Q 044593 170 RIGNDEERIKRVDKFLDVFAKEGCRMVEMSCF 201 (335)
Q Consensus 170 ~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~ 201 (335)
..+. +.+.+++++++|+..|.+++..+.-
T Consensus 151 ~~~~---~~~~~~~v~~ll~~~~~~v~~~~di 179 (328)
T PRK14618 151 VASP---EPGLARRVQAAFSGPSFRVYTSRDR 179 (328)
T ss_pred EEeC---CHHHHHHHHHHhCCCcEEEEecCCc
Confidence 1122 2456788999999999888765433
No 68
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.43 E-value=2.3e-11 Score=116.41 Aligned_cols=168 Identities=15% Similarity=0.181 Sum_probs=113.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce-----------------ecChhhHhhcCCCEEE
Q 044593 31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF-----------------FADLNDLCELHPDVVL 93 (335)
Q Consensus 31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~-----------------~~~~~~~~~~~aDvVI 93 (335)
+|||+|||+|.||+.+|..|.++|++|++|||++. .+...+.|+.. .++. +.. .++|+||
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~D~vi 78 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AAL-ATADLVL 78 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccCh-hhc-cCCCEEE
Confidence 57999999999999999999999999999999753 23344444321 2333 344 6899999
Q ss_pred EecCchhHHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccC----CCCCcccccCCCcceeccc
Q 044593 94 LSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMF----GPESAKSSWENLPFMYDKV 169 (335)
Q Consensus 94 lavp~~~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPma----G~~~~~~~~~g~~~i~~~~ 169 (335)
+|||.....++++.+. +.++++++|+++.+.-. ..+.+++.++....+.+.+|.. ||........|. ..+
T Consensus 79 l~vk~~~~~~~~~~l~-~~~~~~~iii~~~nG~~-~~~~l~~~~~~~~~~~g~~~~~~~~~~pg~~~~~~~g~-l~~--- 152 (341)
T PRK08229 79 VTVKSAATADAAAALA-GHARPGAVVVSFQNGVR-NADVLRAALPGATVLAGMVPFNVISRGPGAFHQGTSGA-LAI--- 152 (341)
T ss_pred EEecCcchHHHHHHHH-hhCCCCCEEEEeCCCCC-cHHHHHHhCCCCcEEEEEEEEEEEecCCceEEecCCCc-eEe---
Confidence 9999999999999885 67888899988754322 2356777776432233334422 222111111222 122
Q ss_pred ccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHhhhh
Q 044593 170 RIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFV 213 (335)
Q Consensus 170 ~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~l 213 (335)
+.. +.++.+.++|+..|.++.+.+.-.+..+..++.++
T Consensus 153 --~~~----~~~~~~~~~l~~~g~~~~~~~di~~~~w~Kl~~N~ 190 (341)
T PRK08229 153 --EAS----PALRPFAAAFARAGLPLVTHEDMRAVQWAKLLLNL 190 (341)
T ss_pred --cCC----chHHHHHHHHHhcCCCceecchhHHHHHHHHHHHh
Confidence 222 23578889999999999998887888877776553
No 69
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.42 E-value=3.2e-12 Score=128.53 Aligned_cols=154 Identities=16% Similarity=0.113 Sum_probs=113.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHH-----------HhCC-------------CceecChhhHh
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVR-----------QQLN-------------APFFADLNDLC 85 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a-----------~~~g-------------~~~~~~~~~~~ 85 (335)
...||+|||+|.||..||..+..+|++|++||++++..+.+ .+.| +..+++.+++
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~~- 84 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALADL- 84 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHh-
Confidence 35789999999999999999999999999999999876542 3345 3456677664
Q ss_pred hcCCCEEEEecCchh--HHHHHhhccccccCCccEEE-EcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCC
Q 044593 86 ELHPDVVLLSTSILS--TQSVLKSIPFQRLKRSTLFV-DVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENL 162 (335)
Q Consensus 86 ~~~aDvVIlavp~~~--~~~vl~~l~~~~l~~~~iVv-d~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~ 162 (335)
.+||+||.|+|.+. -..++.++. ..+++++++. |++|... ..+.+.+...-+|++.|.+..+... ..
T Consensus 85 -~~aDlViEav~E~~~vK~~vf~~l~-~~~~~~ailasntStl~i---~~la~~~~~p~r~~G~hff~Pa~v~-----~L 154 (507)
T PRK08268 85 -ADCDLVVEAIVERLDVKQALFAQLE-AIVSPDCILATNTSSLSI---TAIAAALKHPERVAGLHFFNPVPLM-----KL 154 (507)
T ss_pred -CCCCEEEEcCcccHHHHHHHHHHHH-hhCCCCcEEEECCCCCCH---HHHHhhcCCcccEEEEeecCCcccC-----ee
Confidence 68999999999885 345666674 4567888885 6666532 3565555544579999977744432 11
Q ss_pred cceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeC
Q 044593 163 PFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMS 199 (335)
Q Consensus 163 ~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~ 199 (335)
. .+ ++++.++.+.++.+.++++.+|..++++.
T Consensus 155 v-Ev----v~g~~Ts~~~~~~~~~l~~~lgk~pv~v~ 186 (507)
T PRK08268 155 V-EV----VSGLATDPAVADALYALARAWGKTPVRAK 186 (507)
T ss_pred E-EE----eCCCCCCHHHHHHHHHHHHHcCCceEEec
Confidence 1 11 34455667889999999999999998885
No 70
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=99.41 E-value=4.6e-13 Score=104.52 Aligned_cols=89 Identities=27% Similarity=0.431 Sum_probs=73.9
Q ss_pred eEEEEcccHHHHHHHHHHHHcC---CeEEE-EcCCCCcH-HHHHhCCCceec-ChhhHhhcCCCEEEEecCchhHHHHHh
Q 044593 33 KIAVIGFGNFGQFLAKAFARHH---HTLLV-HSRSDHSP-AVRQQLNAPFFA-DLNDLCELHPDVVLLSTSILSTQSVLK 106 (335)
Q Consensus 33 kI~IIG~G~mG~siA~~L~~~G---~~V~~-~dr~~~~~-~~a~~~g~~~~~-~~~~~~~~~aDvVIlavp~~~~~~vl~ 106 (335)
||+|||+|+||.+++..|.+.| ++|++ ++|+++.. +.+.+.++.... +..+++ +++|+||+|+|+..+.+++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~advvilav~p~~~~~v~~ 79 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAA-QEADVVILAVKPQQLPEVLS 79 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHH-HHTSEEEE-S-GGGHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhh-ccCCEEEEEECHHHHHHHHH
Confidence 7999999999999999999999 89984 49999765 455677776555 677877 78999999999999999999
Q ss_pred hccccccCCccEEEEcCC
Q 044593 107 SIPFQRLKRSTLFVDVLS 124 (335)
Q Consensus 107 ~l~~~~l~~~~iVvd~~S 124 (335)
++ ....++++|+|+..
T Consensus 80 ~i--~~~~~~~~vis~~a 95 (96)
T PF03807_consen 80 EI--PHLLKGKLVISIAA 95 (96)
T ss_dssp HH--HHHHTTSEEEEEST
T ss_pred HH--hhccCCCEEEEeCC
Confidence 98 35778899999863
No 71
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.40 E-value=9.2e-12 Score=119.92 Aligned_cols=210 Identities=14% Similarity=0.131 Sum_probs=135.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcC-------CeEEEEcCCCCc-----HHHHHhC--------------CCceecChhh
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHH-------HTLLVHSRSDHS-----PAVRQQL--------------NAPFFADLND 83 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G-------~~V~~~dr~~~~-----~~~a~~~--------------g~~~~~~~~~ 83 (335)
..+||+|||.|.+|+++|..|.++| ++|.+|.|+++. .+...+. ++..++|+.+
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~e 89 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKE 89 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHH
Confidence 4589999999999999999999987 799999999852 3323221 2234667777
Q ss_pred HhhcCCCEEEEecCchhHHHHHhhcccc--ccCCccEEEEcC-CC----C--chHHHHHHhhCCCCCceEeccccCCCCC
Q 044593 84 LCELHPDVVLLSTSILSTQSVLKSIPFQ--RLKRSTLFVDVL-SV----K--EFPRNLFLKYLPQDFDILCTHPMFGPES 154 (335)
Q Consensus 84 ~~~~~aDvVIlavp~~~~~~vl~~l~~~--~l~~~~iVvd~~-Sv----K--~~~~~~l~~~l~~~~~~v~~HPmaG~~~ 154 (335)
++ +++|+||++||+..+.++++++. + .++++.+|+.++ ++ . ..+.+.+++.++. .+. -+.||..
T Consensus 90 av-~~aDiIvlAVPsq~l~~vl~~l~-~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~--~~~---~LsGPs~ 162 (365)
T PTZ00345 90 AV-EDADLLIFVIPHQFLESVLSQIK-ENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGI--PCC---ALSGANV 162 (365)
T ss_pred HH-hcCCEEEEEcChHHHHHHHHHhc-cccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCC--CeE---EEECCCH
Confidence 77 89999999999999999999995 5 677777777653 11 1 2345666666642 221 2567877
Q ss_pred cccccCCCcceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHhhhhHHHHHHHH--H-HcCCCC---
Q 044593 155 AKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVL--E-RFGVES--- 228 (335)
Q Consensus 155 ~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la~aL--~-~~~~~~--- 228 (335)
+.+...+.|...+ +.+. +.+..+.++++|..-.++++..+...-=++. ..+-.++|.+. . .++...
T Consensus 163 A~Eva~~~pt~~v---ias~--~~~~a~~~~~lf~~~~frvy~s~Dv~GvEl~---galKNviAIa~Gi~dGl~~G~N~k 234 (365)
T PTZ00345 163 ANDVAREEFSEAT---IGCE--DKDDALIWQRLFDRPYFKINCVPDVIGVEVC---GALKNIIALAAGFCDGLGLGTNTK 234 (365)
T ss_pred HHHHHcCCCcEEE---EEeC--CHHHHHHHHHHhCCCcEEEEEcCCcccchhh---HHHHHHHHHHHHHHHhcCCChhHH
Confidence 7666678776553 2332 3567788999999888888876632222222 22333333221 1 112211
Q ss_pred CCCCCcchhhHHHHHHHhhC-CChHhH
Q 044593 229 SPINTKGYETLLDLVDNTKG-DSFDLY 254 (335)
Q Consensus 229 ~~~~~~gf~~~~rl~~~ia~-~~~~lw 254 (335)
..+-+.|+..+.|+...+.+ .+++.+
T Consensus 235 aalitrgl~Em~~l~~a~g~~~~~~T~ 261 (365)
T PTZ00345 235 SAIIRIGLEEMKLFGKIFFPNVMDETF 261 (365)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCccch
Confidence 12446778888887776542 355433
No 72
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=99.39 E-value=6.9e-12 Score=117.37 Aligned_cols=152 Identities=18% Similarity=0.160 Sum_probs=111.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHH-----------hCC-------------CceecChhhHh
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQ-----------QLN-------------APFFADLNDLC 85 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~-----------~~g-------------~~~~~~~~~~~ 85 (335)
..+||+|||+|.||+.||..++..|++|+++|++++..+.+. +.| +..++++.++
T Consensus 2 ~i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~l- 80 (307)
T COG1250 2 EIKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAAL- 80 (307)
T ss_pred CccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhHh-
Confidence 468999999999999999999998899999999976543222 112 1223444444
Q ss_pred hcCCCEEEEecCchh--HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCc
Q 044593 86 ELHPDVVLLSTSILS--TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLP 163 (335)
Q Consensus 86 ~~~aDvVIlavp~~~--~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~ 163 (335)
++||+||-+++.+. -.+++.++. ...++++++...+|+ ..+..+.+.+...-+|++.|++..+..- +
T Consensus 81 -~~~DlVIEAv~E~levK~~vf~~l~-~~~~~~aIlASNTSs--l~it~ia~~~~rper~iG~HFfNP~~~m-------~ 149 (307)
T COG1250 81 -KDADLVIEAVVEDLELKKQVFAELE-ALAKPDAILASNTSS--LSITELAEALKRPERFIGLHFFNPVPLM-------P 149 (307)
T ss_pred -ccCCEEEEeccccHHHHHHHHHHHH-hhcCCCcEEeeccCC--CCHHHHHHHhCCchhEEEEeccCCCCcc-------e
Confidence 79999999999885 467888885 678899999887665 4445666666555579999987766532 1
Q ss_pred ceecccccCCChhHHHHHHHHHHHHHhcCCEEE
Q 044593 164 FMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMV 196 (335)
Q Consensus 164 ~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~ 196 (335)
+++ ++.+..++++.++.+.++.+.+|..++
T Consensus 150 -LVE--vI~g~~T~~e~~~~~~~~~~~igK~~v 179 (307)
T COG1250 150 -LVE--VIRGEKTSDETVERVVEFAKKIGKTPV 179 (307)
T ss_pred -eEE--EecCCCCCHHHHHHHHHHHHHcCCCCE
Confidence 221 234555667889999999999995553
No 73
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=99.39 E-value=8e-12 Score=109.94 Aligned_cols=163 Identities=19% Similarity=0.248 Sum_probs=107.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCC-CcHH-HHHhCCCce-ecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593 31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSD-HSPA-VRQQLNAPF-FADLNDLCELHPDVVLLSTSILSTQSVLKS 107 (335)
Q Consensus 31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~-~~~~-~a~~~g~~~-~~~~~~~~~~~aDvVIlavp~~~~~~vl~~ 107 (335)
+|+|+|+|.|+||+.+|+.|.+.||+|++-.++. +..+ .+..++... ..++.+++ +.+|+||+++|...+..++.+
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~-~~aDVVvLAVP~~a~~~v~~~ 79 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAA-ALADVVVLAVPFEAIPDVLAE 79 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHH-hcCCEEEEeccHHHHHhHHHH
Confidence 5899999999999999999999999998886554 4433 333444432 23455666 789999999999999999999
Q ss_pred ccccccCCccEEEEcCCC---------------CchHHHHHHhhCCCCCceE-eccccCCCCCcccccC-CCcceecccc
Q 044593 108 IPFQRLKRSTLFVDVLSV---------------KEFPRNLFLKYLPQDFDIL-CTHPMFGPESAKSSWE-NLPFMYDKVR 170 (335)
Q Consensus 108 l~~~~l~~~~iVvd~~Sv---------------K~~~~~~l~~~l~~~~~~v-~~HPmaG~~~~~~~~~-g~~~i~~~~~ 170 (335)
+. ..+. |++|+|++.- .....+.+++.+|.. ++| .+|-++-.......-. +...++.
T Consensus 80 l~-~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~a-kVVkAFn~i~a~~l~~~~~~~~~~~v~v--- 153 (211)
T COG2085 80 LR-DALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGA-KVVKAFNTIPAAVLADLAKPGGRRDVLV--- 153 (211)
T ss_pred HH-HHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCc-chhhhhcccCHHHhccCCCcCCceeEEE---
Confidence 95 4454 8999998653 223446666777653 332 2332222211110001 2222321
Q ss_pred cCCChhHHHHHHHHHHHHHhcCCEEEEeChHHH
Q 044593 171 IGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDH 203 (335)
Q Consensus 171 ~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eH 203 (335)
+++| .++.+.+.+|.+.+|++++-..+-+.
T Consensus 154 agDD---~~Ak~~v~~L~~~iG~~~ld~G~L~~ 183 (211)
T COG2085 154 AGDD---AEAKAVVAELAEDIGFRPLDAGPLEN 183 (211)
T ss_pred ecCc---HHHHHHHHHHHHhcCcceeecccccc
Confidence 3443 45677888999999999988876443
No 74
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=99.37 E-value=1.5e-11 Score=121.73 Aligned_cols=160 Identities=14% Similarity=0.091 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhC-----CCceecChhhHhhc---CCCEEEEecCchh-HHHHHhhccccc
Q 044593 42 FGQFLAKAFARHHHTLLVHSRSDHSPAVRQQL-----NAPFFADLNDLCEL---HPDVVLLSTSILS-TQSVLKSIPFQR 112 (335)
Q Consensus 42 mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~-----g~~~~~~~~~~~~~---~aDvVIlavp~~~-~~~vl~~l~~~~ 112 (335)
||..||+.|.++|++|++|||+++..+...+. |+....++.+++ + .+|+||+|+|... +.+++..+. +.
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v-~~l~~~~~Ii~mv~~g~~v~~Vi~~l~-~~ 78 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFV-ASLEKPRKILLMVKAGAPVDAVIEQLL-PL 78 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHH-hhCCCCCEEEEECCCchHHHHHHHHHH-hc
Confidence 89999999999999999999999876555542 477778888887 4 4899999999885 688888884 67
Q ss_pred cCCccEEEEcCCCCchHHHHHHhhC-CCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHHHHHHhc
Q 044593 113 LKRSTLFVDVLSVKEFPRNLFLKYL-PQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKE 191 (335)
Q Consensus 113 l~~~~iVvd~~SvK~~~~~~l~~~l-~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l~~~~ 191 (335)
+.+|.+|+|++++.........+.+ ..+++|+.+ |+.|.+.+.. .|. .++ ++++ ++.++.++++|+.+
T Consensus 79 l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvda-pVSGG~~gA~--~G~-siM----~GG~---~~a~~~~~piL~~i 147 (459)
T PRK09287 79 LEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGM-GVSGGEEGAL--HGP-SIM----PGGQ---KEAYELVAPILEKI 147 (459)
T ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEec-CCCCCHHHHh--cCC-EEE----EeCC---HHHHHHHHHHHHHH
Confidence 8999999999876544333333333 457789985 9999876532 564 444 2444 46789999999999
Q ss_pred CCEE-------EEeChHHHHHHHHHhhhhH
Q 044593 192 GCRM-------VEMSCFDHDKYAAGSQFVT 214 (335)
Q Consensus 192 G~~v-------~~~~~~eHD~~~A~~s~lp 214 (335)
+.++ .++.+.--...+.++++..
T Consensus 148 a~~~~~g~~c~~~vG~~GaGh~vKmvhN~i 177 (459)
T PRK09287 148 AAKVEDGEPCVTYIGPDGAGHYVKMVHNGI 177 (459)
T ss_pred hhhhcCCCCceeeeCCCCHHHHHHHHHHHH
Confidence 9887 8888877777888776543
No 75
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.37 E-value=1.3e-11 Score=118.52 Aligned_cols=165 Identities=16% Similarity=0.171 Sum_probs=112.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCC---------C------ceecChhhHhhcCCCEEEE
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLN---------A------PFFADLNDLCELHPDVVLL 94 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g---------~------~~~~~~~~~~~~~aDvVIl 94 (335)
.+|||+|||+|.||+++|..|.++| +|++|.++++..+...+.+ . ..+++..+.+ .++|+||+
T Consensus 6 ~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~-~~aDlVil 83 (341)
T PRK12439 6 REPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAA-NCADVVVM 83 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHH-hcCCEEEE
Confidence 4689999999999999999999999 6888888876655444321 1 2345666666 78999999
Q ss_pred ecCchhHHHHHhhccccccCCccEEEEcCC-CC----chHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceeccc
Q 044593 95 STSILSTQSVLKSIPFQRLKRSTLFVDVLS-VK----EFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKV 169 (335)
Q Consensus 95 avp~~~~~~vl~~l~~~~l~~~~iVvd~~S-vK----~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~ 169 (335)
|||...+.++++++. +.++++++|+.+.. +. ....+.+++.++.. ++. -+.||....+...|.+....
T Consensus 84 avps~~~~~vl~~i~-~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~-~~~---~l~GP~~a~ev~~g~~t~~v-- 156 (341)
T PRK12439 84 GVPSHGFRGVLTELA-KELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGH-PAG---ILAGPNIAREVAEGYAAAAV-- 156 (341)
T ss_pred EeCHHHHHHHHHHHH-hhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCC-CeE---EEECCCHHHHHHcCCCeEEE--
Confidence 999999999999995 67888877776632 21 11235666666532 211 14566654444456654332
Q ss_pred ccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHH
Q 044593 170 RIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKY 206 (335)
Q Consensus 170 ~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~ 206 (335)
++.. +.+..+.++++|+.-+++++..+.-.--.+
T Consensus 157 -ia~~--~~~~~~~v~~lf~~~~~~v~~s~Di~gve~ 190 (341)
T PRK12439 157 -LAMP--DQHLATRLSPLFRTRRFRVYTTDDVVGVEM 190 (341)
T ss_pred -EEeC--CHHHHHHHHHHhCCCCEEEEEcCchHHHHH
Confidence 2222 245678899999999998887764433333
No 76
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=99.36 E-value=1.7e-12 Score=110.98 Aligned_cols=129 Identities=22% Similarity=0.312 Sum_probs=91.4
Q ss_pred eEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCC--------------CceecChhhHhhcCCCEEEEecCc
Q 044593 33 KIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLN--------------APFFADLNDLCELHPDVVLLSTSI 98 (335)
Q Consensus 33 kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g--------------~~~~~~~~~~~~~~aDvVIlavp~ 98 (335)
||+|||.|++|.++|..|..+|++|++|.|+++..+...+.+ +..++|+++++ +++|+||+++|.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~-~~ad~IiiavPs 79 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEAL-EDADIIIIAVPS 79 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHH-TT-SEEEE-S-G
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHh-CcccEEEecccH
Confidence 799999999999999999999999999999986654443321 22467888887 899999999999
Q ss_pred hhHHHHHhhccccccCCccEEEEcCC-----CCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceec
Q 044593 99 LSTQSVLKSIPFQRLKRSTLFVDVLS-----VKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYD 167 (335)
Q Consensus 99 ~~~~~vl~~l~~~~l~~~~iVvd~~S-----vK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~ 167 (335)
....++++++. ++++++++|+.++- +...+.+.+++.++... +. -+.||..+.+...+.|..++
T Consensus 80 ~~~~~~~~~l~-~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~-~~---~lsGP~~A~Ei~~~~pt~~~ 148 (157)
T PF01210_consen 80 QAHREVLEQLA-PYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIPR-IA---VLSGPSFAEEIAEGKPTAVV 148 (157)
T ss_dssp GGHHHHHHHHT-TTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCG-EE---EEESS--HHHHHTT--EEEE
T ss_pred HHHHHHHHHHh-hccCCCCEEEEecCCcccCCCccHHHHHHHHhhhcc-eE---EeeCccHHHHHHcCCCeEEE
Confidence 99999999996 78899999887741 12235577777776542 22 25677776666677666553
No 77
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.36 E-value=1.6e-11 Score=128.18 Aligned_cols=164 Identities=15% Similarity=0.134 Sum_probs=120.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHH-----------hCC-------------CceecChhhHh
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQ-----------QLN-------------APFFADLNDLC 85 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~-----------~~g-------------~~~~~~~~~~~ 85 (335)
...||+|||+|.||..||..++.+|++|+++|++++..+.+. +.| +..+++.+++
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~- 390 (715)
T PRK11730 312 PVKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGF- 390 (715)
T ss_pred ccceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHh-
Confidence 457899999999999999999999999999999987654321 112 2345566554
Q ss_pred hcCCCEEEEecCchh--HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCc
Q 044593 86 ELHPDVVLLSTSILS--TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLP 163 (335)
Q Consensus 86 ~~~aDvVIlavp~~~--~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~ 163 (335)
++||+||-|+|.+. ..+++.++. ..+++++++...+|+ ..+..+.+.+...-+|++.|+...+..- +
T Consensus 391 -~~aDlViEav~E~l~~K~~vf~~l~-~~~~~~~ilasNTSs--l~i~~la~~~~~p~r~~g~Hff~P~~~~-------~ 459 (715)
T PRK11730 391 -ERVDVVVEAVVENPKVKAAVLAEVE-QKVREDTILASNTST--ISISLLAKALKRPENFCGMHFFNPVHRM-------P 459 (715)
T ss_pred -cCCCEEEecccCcHHHHHHHHHHHH-hhCCCCcEEEEcCCC--CCHHHHHhhcCCCccEEEEecCCccccc-------c
Confidence 79999999999875 468999995 678999999887766 4456666666655689999987665532 1
Q ss_pred ceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHH
Q 044593 164 FMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAG 209 (335)
Q Consensus 164 ~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~ 209 (335)
+++ ++.++.++++.++.+.++++.+|..++.+. +....++.-
T Consensus 460 -lVE--vv~g~~T~~~~~~~~~~~~~~lgk~pv~v~-d~pGfv~nR 501 (715)
T PRK11730 460 -LVE--VIRGEKTSDETIATVVAYASKMGKTPIVVN-DCPGFFVNR 501 (715)
T ss_pred -eEE--eeCCCCCCHHHHHHHHHHHHHhCCceEEec-CcCchhHHH
Confidence 221 134555667888999999999999988883 444444433
No 78
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.35 E-value=2.3e-11 Score=126.79 Aligned_cols=162 Identities=14% Similarity=0.119 Sum_probs=119.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHH-HcCCeEEEEcCCCCcHHHHH-----------hC-------------CCceecChhhH
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFA-RHHHTLLVHSRSDHSPAVRQ-----------QL-------------NAPFFADLNDL 84 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~-~~G~~V~~~dr~~~~~~~a~-----------~~-------------g~~~~~~~~~~ 84 (335)
..+||+|||+|.||..||..++ .+|++|+++|++++..+.+. +. .+..+++.++
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~- 381 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYRG- 381 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChHH-
Confidence 4578999999999999999998 58999999999986543221 11 1234556654
Q ss_pred hhcCCCEEEEecCchh--HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCC
Q 044593 85 CELHPDVVLLSTSILS--TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENL 162 (335)
Q Consensus 85 ~~~~aDvVIlavp~~~--~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~ 162 (335)
+ ++||+||-|+|.+. ..+++.++. ..+++++++...+|+ ..+..+.+.+....+|++.|+...+...
T Consensus 382 ~-~~adlViEav~E~l~~K~~v~~~l~-~~~~~~~ilasnTS~--l~i~~la~~~~~p~r~~g~HffnP~~~~------- 450 (699)
T TIGR02440 382 F-KDVDIVIEAVFEDLALKHQMVKDIE-QECAAHTIFASNTSS--LPIGQIAAAASRPENVIGLHYFSPVEKM------- 450 (699)
T ss_pred h-ccCCEEEEeccccHHHHHHHHHHHH-hhCCCCcEEEeCCCC--CCHHHHHHhcCCcccEEEEecCCccccC-------
Confidence 4 79999999999885 468889985 678899999887666 4456666666555689999998766532
Q ss_pred cceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHH
Q 044593 163 PFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYA 207 (335)
Q Consensus 163 ~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~ 207 (335)
+ +++ ++.++.++++.++.+.++++.+|..++.+. +....+.
T Consensus 451 ~-lVE--vv~g~~T~~~~~~~~~~~~~~~gk~pv~v~-d~pGfi~ 491 (699)
T TIGR02440 451 P-LVE--VIPHAGTSEQTIATTVALAKKQGKTPIVVA-DKAGFYV 491 (699)
T ss_pred c-eEE--EeCCCCCCHHHHHHHHHHHHHcCCeEEEEc-cccchHH
Confidence 1 221 234556677889999999999999999884 4444333
No 79
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.35 E-value=2.4e-11 Score=126.79 Aligned_cols=165 Identities=14% Similarity=0.129 Sum_probs=121.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHh-----------CC-------------CceecChhhH
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ-----------LN-------------APFFADLNDL 84 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~-----------~g-------------~~~~~~~~~~ 84 (335)
...+||+|||+|.||..||..++.+|++|+++|++++..+.+.+ .| +..+++.+++
T Consensus 311 ~~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 390 (714)
T TIGR02437 311 KDVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAGF 390 (714)
T ss_pred cccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHh
Confidence 45679999999999999999999999999999999876543221 11 2234555444
Q ss_pred hhcCCCEEEEecCchh--HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCC
Q 044593 85 CELHPDVVLLSTSILS--TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENL 162 (335)
Q Consensus 85 ~~~~aDvVIlavp~~~--~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~ 162 (335)
++||+||-|+|.+. ..+++.++. ..+++++++...+|+ ..+..+.+.++..-+|++.|+...+..-
T Consensus 391 --~~aDlViEav~E~l~~K~~vf~~l~-~~~~~~~ilasnTS~--l~i~~ia~~~~~p~r~ig~Hff~P~~~~------- 458 (714)
T TIGR02437 391 --DNVDIVVEAVVENPKVKAAVLAEVE-QHVREDAILASNTST--ISISLLAKALKRPENFCGMHFFNPVHRM------- 458 (714)
T ss_pred --cCCCEEEEcCcccHHHHHHHHHHHH-hhCCCCcEEEECCCC--CCHHHHHhhcCCcccEEEEecCCCcccC-------
Confidence 79999999999885 468999995 678999999887766 4456666666655689999987665532
Q ss_pred cceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHH
Q 044593 163 PFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAG 209 (335)
Q Consensus 163 ~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~ 209 (335)
+ +++ ++.++.++++.++.+.++++.+|..++.+. +....+..-
T Consensus 459 ~-lvE--vv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~-d~pGfi~NR 501 (714)
T TIGR02437 459 P-LVE--VIRGEKSSDETIATVVAYASKMGKTPIVVN-DCPGFFVNR 501 (714)
T ss_pred c-eEe--ecCCCCCCHHHHHHHHHHHHHcCCEEEEeC-CcccchHHH
Confidence 2 221 234556677889999999999999988884 333334333
No 80
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=99.34 E-value=1.9e-11 Score=116.84 Aligned_cols=206 Identities=12% Similarity=0.126 Sum_probs=133.0
Q ss_pred eEEEEcccHHHHHHHHHHHHcC--------CeEEEEcCCC-----CcHHHHHhC--------CC------ceecChhhHh
Q 044593 33 KIAVIGFGNFGQFLAKAFARHH--------HTLLVHSRSD-----HSPAVRQQL--------NA------PFFADLNDLC 85 (335)
Q Consensus 33 kI~IIG~G~mG~siA~~L~~~G--------~~V~~~dr~~-----~~~~~a~~~--------g~------~~~~~~~~~~ 85 (335)
||+|||.|.+|+++|..|..+| ++|.+|.|++ +..+...+. |+ ..++|+.+++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 6999999999999999999999 9999999843 222222111 22 2456778877
Q ss_pred hcCCCEEEEecCchhHHHHHhhccccccCCccEEEEcC-----C--CCchHHHHHHhhCCCCCceEeccccCCCCCcccc
Q 044593 86 ELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVL-----S--VKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSS 158 (335)
Q Consensus 86 ~~~aDvVIlavp~~~~~~vl~~l~~~~l~~~~iVvd~~-----S--vK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~ 158 (335)
+++|+||+|||...+.++++++. +.++++++++.++ . +...+.+.+++.++. .+ --+.||..+.+.
T Consensus 81 -~~ADiIIlAVPs~~i~~vl~~l~-~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~--~~---~~lsGP~~A~Ev 153 (342)
T TIGR03376 81 -KGADILVFVIPHQFLEGICKQLK-GHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGI--PC---GVLSGANLANEV 153 (342)
T ss_pred -hcCCEEEEECChHHHHHHHHHHH-hhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCC--Ce---EEeeCcchHHHH
Confidence 89999999999999999999995 6788888888763 1 112344566666632 22 226688887677
Q ss_pred cCCCcceecccccCCChhH--HHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHhhhhHHHHHHH--HH-HcCCCC---CC
Q 044593 159 WENLPFMYDKVRIGNDEER--IKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRV--LE-RFGVES---SP 230 (335)
Q Consensus 159 ~~g~~~i~~~~~~~~~~~~--~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la~a--L~-~~~~~~---~~ 230 (335)
..+.|...+ +.+...+ .+..+.++++|..--++++..+...-=++.+ .+--++|.+ +. .++... ..
T Consensus 154 a~~~pt~~~---ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~GvEl~g---alKNv~AIa~Gi~~Gl~~g~N~~aa 227 (342)
T TIGR03376 154 AKEKFSETT---VGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAGVEIAG---ALKNVVAIAAGFVDGLGWGDNAKAA 227 (342)
T ss_pred HcCCCceEE---EEeCCCcchHHHHHHHHHHhCCCCEEEEEcCCcccchhhH---HHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 778776553 2222111 4667889999998888888776332222222 233333322 11 112211 12
Q ss_pred CCCcchhhHHHHHHHhhCCChH
Q 044593 231 INTKGYETLLDLVDNTKGDSFD 252 (335)
Q Consensus 231 ~~~~gf~~~~rl~~~ia~~~~~ 252 (335)
+-+.|++.+.|+...+ +.+|+
T Consensus 228 litrgl~Em~~l~~~~-g~~~~ 248 (342)
T TIGR03376 228 VMRRGLLEMIKFARMF-FPTGE 248 (342)
T ss_pred HHHHHHHHHHHHHHHh-CCCCC
Confidence 4567888888888774 44443
No 81
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.33 E-value=2.2e-11 Score=127.42 Aligned_cols=156 Identities=13% Similarity=0.116 Sum_probs=117.8
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHh-----------CC-------------CceecChhhH
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ-----------LN-------------APFFADLNDL 84 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~-----------~g-------------~~~~~~~~~~ 84 (335)
....+|+|||+|.||+.||..++.+|++|+++|++++..+.+.+ .| +..+++.+++
T Consensus 333 ~~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 412 (737)
T TIGR02441 333 RPVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYSGF 412 (737)
T ss_pred CcccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHh
Confidence 45679999999999999999999999999999999876543211 12 2345566554
Q ss_pred hhcCCCEEEEecCchh--HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCC
Q 044593 85 CELHPDVVLLSTSILS--TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENL 162 (335)
Q Consensus 85 ~~~~aDvVIlavp~~~--~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~ 162 (335)
++||+||-|+|.+. ..+++.++. ..+++++++...+|+ ..+..+.+.+...-+|++.|+...+..-
T Consensus 413 --~~aDlViEAv~E~l~~K~~vf~~l~-~~~~~~~ilasNTSs--l~i~~la~~~~~p~r~ig~Hff~P~~~m------- 480 (737)
T TIGR02441 413 --KNADMVIEAVFEDLSLKHKVIKEVE-AVVPPHCIIASNTSA--LPIKDIAAVSSRPEKVIGMHYFSPVDKM------- 480 (737)
T ss_pred --ccCCeehhhccccHHHHHHHHHHHH-hhCCCCcEEEEcCCC--CCHHHHHhhcCCccceEEEeccCCcccC-------
Confidence 79999999999885 568999995 678999999877665 4456676666655689999987765532
Q ss_pred cceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeC
Q 044593 163 PFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMS 199 (335)
Q Consensus 163 ~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~ 199 (335)
+ +++ ++.++.++++.++.+..+++.+|..++.+.
T Consensus 481 ~-LvE--vv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~ 514 (737)
T TIGR02441 481 Q-LLE--IITHDGTSKDTLASAVAVGLKQGKVVIVVK 514 (737)
T ss_pred c-eEE--EeCCCCCCHHHHHHHHHHHHHCCCeEEEEC
Confidence 1 221 134556677889999999999999988883
No 82
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=99.33 E-value=1.1e-10 Score=109.81 Aligned_cols=169 Identities=13% Similarity=0.175 Sum_probs=106.7
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce-------------ecChhhHhhcCCCEEEEecCc
Q 044593 32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF-------------FADLNDLCELHPDVVLLSTSI 98 (335)
Q Consensus 32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~-------------~~~~~~~~~~~aDvVIlavp~ 98 (335)
|||+|||+|.||+.+|..|.++|++|++++| ++..+...+.|+.. .++..+.. ..+|+||+|+|.
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~vilavk~ 78 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELT-GPFDLVILAVKA 78 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHcc-CCCCEEEEEecc
Confidence 6899999999999999999999999999999 65555455555421 23344444 689999999999
Q ss_pred hhHHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCC-Cccccc--CCC-cceecccccCC-
Q 044593 99 LSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPE-SAKSSW--ENL-PFMYDKVRIGN- 173 (335)
Q Consensus 99 ~~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~-~~~~~~--~g~-~~i~~~~~~~~- 173 (335)
..+.++++++. +.+.++++|+.+...- ...+.+.+.++.. +++++-...+.. .++... .+. .+.+ +.
T Consensus 79 ~~~~~~~~~l~-~~~~~~~~ii~~~nG~-~~~~~l~~~~~~~-~v~~g~~~~~~~~~~~g~v~~~~~~~~~i-----G~~ 150 (305)
T PRK12921 79 YQLDAAIPDLK-PLVGEDTVIIPLQNGI-GQLEQLEPYFGRE-RVLGGVVFISAQLNGDGVVVQRADHRLTF-----GEI 150 (305)
T ss_pred cCHHHHHHHHH-hhcCCCCEEEEeeCCC-ChHHHHHHhCCcc-cEEEEEEEEEEEECCCeEEEEcCCCcEEE-----cCC
Confidence 99999999995 5677888777663321 2345666667643 233221111111 111000 111 1122 21
Q ss_pred ChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHh
Q 044593 174 DEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGS 210 (335)
Q Consensus 174 ~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~ 210 (335)
+....+..+.+.++|...|..+...+.-.+..+..++
T Consensus 151 ~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~ 187 (305)
T PRK12921 151 PGQRSERTRAVRDALAGARLEVVLSENIRQDIWRKLL 187 (305)
T ss_pred CCCcCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHH
Confidence 1122345667888999999876665555555555543
No 83
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.33 E-value=2.9e-11 Score=107.49 Aligned_cols=167 Identities=15% Similarity=0.158 Sum_probs=123.0
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhh--cCCCEEEEecCch-hHHHHHhhc
Q 044593 32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCE--LHPDVVLLSTSIL-STQSVLKSI 108 (335)
Q Consensus 32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~--~~aDvVIlavp~~-~~~~vl~~l 108 (335)
|+|+.||+|.||..+++.|.+.||+|++||+|+...+.+...|+...+++++++. ....+|-+.+|.. .+.++++++
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~~l 80 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVIDDL 80 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHHHH
Confidence 7899999999999999999999999999999999998888999888888877652 4678999999998 688999999
Q ss_pred cccccCCccEEEEcCCCCc-hHHHHHHhhCCCCCceEeccccCCCCCccccc-CCCcceecccccCCChhHHHHHHHHHH
Q 044593 109 PFQRLKRSTLFVDVLSVKE-FPRNLFLKYLPQDFDILCTHPMFGPESAKSSW-ENLPFMYDKVRIGNDEERIKRVDKFLD 186 (335)
Q Consensus 109 ~~~~l~~~~iVvd~~SvK~-~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~-~g~~~i~~~~~~~~~~~~~~~~~~v~~ 186 (335)
+ +.+.+|.+|+|-+++.- ...+..++...++++|+-+ |..-+..+. .|..+++ +.+ ++.++.+.+
T Consensus 81 a-~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~----GTSGG~~G~~~G~~lMi-----GG~---~~a~~~~~p 147 (300)
T COG1023 81 A-PLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDV----GTSGGVWGAERGYCLMI-----GGD---EEAVERLEP 147 (300)
T ss_pred H-hhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEec----cCCCCchhhhcCceEEe-----cCc---HHHHHHHHH
Confidence 6 78999999999876532 2334433444567888865 222221111 3444333 454 468899999
Q ss_pred HHHhcCC---EEEEeChHHHHHHHHHhh
Q 044593 187 VFAKEGC---RMVEMSCFDHDKYAAGSQ 211 (335)
Q Consensus 187 l~~~~G~---~v~~~~~~eHD~~~A~~s 211 (335)
+|+.+-. -..++.|.--...+.+++
T Consensus 148 if~~lA~ge~Gyl~~Gp~GsGHfvKMVH 175 (300)
T COG1023 148 IFKALAPGEDGYLYCGPSGSGHFVKMVH 175 (300)
T ss_pred HHHhhCcCcCccccccCCCcchhHHHHh
Confidence 9997754 255666655444566554
No 84
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=99.31 E-value=4.6e-11 Score=109.45 Aligned_cols=152 Identities=16% Similarity=0.129 Sum_probs=114.4
Q ss_pred CeEEEEcCCCCcHH-HHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhhccccccCCccEEEEcCCCCchHHHHH
Q 044593 55 HTLLVHSRSDHSPA-VRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLF 133 (335)
Q Consensus 55 ~~V~~~dr~~~~~~-~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l 133 (335)
++|++++|+++..+ .+.+.|+....++.+++ .++|+||+|||+..+.+++.++. +.+.++++|+++.+. ..++.+
T Consensus 10 ~~I~v~~R~~e~~~~l~~~~g~~~~~~~~e~~-~~aDiIiLaVkP~~i~~vl~~l~-~~~~~~~~ivS~~ag--i~~~~l 85 (245)
T TIGR00112 10 YDIIVINRSPEKLAALAKELGIVASSDAQEAV-KEADVVFLAVKPQDLEEVLSELK-SEKGKDKLLISIAAG--VTLEKL 85 (245)
T ss_pred CeEEEEcCCHHHHHHHHHHcCcEEeCChHHHH-hhCCEEEEEeCHHHHHHHHHHHh-hhccCCCEEEEecCC--CCHHHH
Confidence 58999999987654 44566877777777877 78999999999999999999995 456677899988655 455788
Q ss_pred HhhCCCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHhhhh
Q 044593 134 LKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFV 213 (335)
Q Consensus 134 ~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~l 213 (335)
++.++.+..++...|......+ .|...+. .++..+.+..+.++++|+.+| +++++++++-|.+++++...
T Consensus 86 ~~~~~~~~~ivR~mPn~~~~~~----~g~t~~~-----~~~~~~~~~~~~v~~lf~~~G-~~~~v~E~~~~~~talsgsg 155 (245)
T TIGR00112 86 SQLLGGTRRVVRVMPNTPAKVG----AGVTAIA-----ANANVSEEDRALVLALFKAVG-EVVELPEALMDAVTALSGSG 155 (245)
T ss_pred HHHcCCCCeEEEECCChHHHHh----CCeEEEe-----cCCCCCHHHHHHHHHHHHhCC-CEEEECHHHcchHHhhccCc
Confidence 8888755578888888765554 3433232 122333456688899999999 57788888999999999888
Q ss_pred HHHHHHH
Q 044593 214 THTMGRV 220 (335)
Q Consensus 214 ph~la~a 220 (335)
|-++...
T Consensus 156 PA~~~~~ 162 (245)
T TIGR00112 156 PAYVFLF 162 (245)
T ss_pred HHHHHHH
Confidence 8866543
No 85
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=99.30 E-value=8e-11 Score=110.57 Aligned_cols=167 Identities=16% Similarity=0.192 Sum_probs=105.1
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce-----------ecChhhHhhcCCCEEEEecCchh
Q 044593 32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF-----------FADLNDLCELHPDVVLLSTSILS 100 (335)
Q Consensus 32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~-----------~~~~~~~~~~~aDvVIlavp~~~ 100 (335)
|||+|||+|.||+.+|..|.+.|++|++++|+++..+...+.|+.. ..+..++ ..+|+||+|||...
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~d~vila~k~~~ 78 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL--GPQDLVILAVKAYQ 78 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc--CCCCEEEEeccccc
Confidence 6899999999999999999999999999999877665555556522 2333333 68999999999999
Q ss_pred HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccC-----CCCCcccccCCCcceecccccCCCh
Q 044593 101 TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMF-----GPESAKSSWENLPFMYDKVRIGNDE 175 (335)
Q Consensus 101 ~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPma-----G~~~~~~~~~g~~~i~~~~~~~~~~ 175 (335)
+.++++++. +.+.++++|+.+.... ...+.+.+.++.. .++.+-... +|..-.....+. ..+ +...
T Consensus 79 ~~~~~~~l~-~~l~~~~~iv~~~nG~-~~~~~l~~~~~~~-~i~~~~~~~~~~~~~p~~v~~~~~g~-~~i-----g~~~ 149 (304)
T PRK06522 79 LPAALPSLA-PLLGPDTPVLFLQNGV-GHLEELAAYIGPE-RVLGGVVTHAAELEGPGVVRHTGGGR-LKI-----GEPD 149 (304)
T ss_pred HHHHHHHHh-hhcCCCCEEEEecCCC-CcHHHHHHhcCcc-cEEEEEEEEeeEecCCCEEEEcCCCC-EEE-----eCCC
Confidence 999999995 6777887777664432 2335566666542 233221111 111100000121 122 2111
Q ss_pred hHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHH
Q 044593 176 ERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAG 209 (335)
Q Consensus 176 ~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~ 209 (335)
...+..+.+.++|...|..+...+.-++..+..+
T Consensus 150 ~~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl 183 (304)
T PRK06522 150 GESAAAEALADLLNAAGLDVEWSPDIRTEIWRKL 183 (304)
T ss_pred CCcHHHHHHHHHHHhcCCCCCCChHHHHHHHHHH
Confidence 1113467788889988887655554455555443
No 86
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.30 E-value=5.5e-11 Score=124.19 Aligned_cols=155 Identities=15% Similarity=0.140 Sum_probs=116.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHH-HcCCeEEEEcCCCCcHHHHH-----------hCC-------------CceecChhhH
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFA-RHHHTLLVHSRSDHSPAVRQ-----------QLN-------------APFFADLNDL 84 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~-~~G~~V~~~dr~~~~~~~a~-----------~~g-------------~~~~~~~~~~ 84 (335)
..+||+|||+|.||..||..++ ..|++|+++|++++..+.+. +.| +..+++.++
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~- 386 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRG- 386 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChHH-
Confidence 4679999999999999999998 88999999999987544321 111 234456544
Q ss_pred hhcCCCEEEEecCchh--HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCC
Q 044593 85 CELHPDVVLLSTSILS--TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENL 162 (335)
Q Consensus 85 ~~~~aDvVIlavp~~~--~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~ 162 (335)
+ ++||+||-|+|.+. ..+++.++. ..+++++++...+|+ ..+..+.+.+....+|++.|+...+..-
T Consensus 387 ~-~~aDlViEav~E~~~~K~~v~~~le-~~~~~~~ilasnTS~--l~i~~la~~~~~p~r~ig~Hff~P~~~~------- 455 (708)
T PRK11154 387 F-KHADVVIEAVFEDLALKQQMVAEVE-QNCAPHTIFASNTSS--LPIGQIAAAAARPEQVIGLHYFSPVEKM------- 455 (708)
T ss_pred h-ccCCEEeecccccHHHHHHHHHHHH-hhCCCCcEEEECCCC--CCHHHHHHhcCcccceEEEecCCccccC-------
Confidence 4 79999999999875 468899985 678999999987766 4456666666555689999987655532
Q ss_pred cceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeC
Q 044593 163 PFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMS 199 (335)
Q Consensus 163 ~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~ 199 (335)
+ +++ ++.++.++++.++.+.++++.+|..++.+.
T Consensus 456 ~-lVE--vv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~ 489 (708)
T PRK11154 456 P-LVE--VIPHAKTSAETIATTVALAKKQGKTPIVVR 489 (708)
T ss_pred c-eEE--EECCCCCCHHHHHHHHHHHHHcCCceEEEe
Confidence 1 221 234566778889999999999999888874
No 87
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.30 E-value=8.9e-11 Score=115.63 Aligned_cols=175 Identities=13% Similarity=0.061 Sum_probs=108.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCc----------------eecChhhHhhcCCCEEE
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAP----------------FFADLNDLCELHPDVVL 93 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~----------------~~~~~~~~~~~~aDvVI 93 (335)
..|||+|||+|.||..+|..|++ ||+|++||++++..+... .|.. .+++..+.+ .+||++|
T Consensus 5 ~~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~-~~advvi 81 (425)
T PRK15182 5 DEVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK-NGVDVNLETTEEELREARYLKFTSEIEKI-KECNFYI 81 (425)
T ss_pred CCCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHH-cCCCEEE
Confidence 35899999999999999999887 699999999998876554 3432 223333445 7999999
Q ss_pred EecCch----------hHHHHHhhccccccCCccEEEEcCCCCchHHHHH-HhhCCC--C-----CceEeccccCCCCCc
Q 044593 94 LSTSIL----------STQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLF-LKYLPQ--D-----FDILCTHPMFGPESA 155 (335)
Q Consensus 94 lavp~~----------~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l-~~~l~~--~-----~~~v~~HPmaG~~~~ 155 (335)
+|+|.. .+....+.+. +.+++|++|++.+++.....+.+ ...+.. + ..+++..|-+..+..
T Consensus 82 i~Vptp~~~~~~~dl~~v~~a~~~i~-~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~ 160 (425)
T PRK15182 82 ITVPTPINTYKQPDLTPLIKASETVG-TVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGD 160 (425)
T ss_pred EEcCCCCCCCCCcchHHHHHHHHHHH-HhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCc
Confidence 999965 2444455664 57889999999998876554432 222111 1 123444455544321
Q ss_pred c-cccCCCcceecccccCCChhHHHHHHHHHHHHHhcC-CEEEEeChHHHHHHHHHhhhhHH
Q 044593 156 K-SSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEG-CRMVEMSCFDHDKYAAGSQFVTH 215 (335)
Q Consensus 156 ~-~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G-~~v~~~~~~eHD~~~A~~s~lph 215 (335)
. ..+...+.++ .+.+ ++..+.+.++++.+. ..++.++.-+-.+++.++.+.-.
T Consensus 161 a~~~~~~~~riv----~G~~---~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~ 215 (425)
T PRK15182 161 KKHRLTNIKKIT----SGST---AQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQR 215 (425)
T ss_pred ccccccCCCeEE----ECCC---HHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHH
Confidence 1 0011122222 2333 345567788888764 23455555555667777665544
No 88
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.29 E-value=7.2e-11 Score=112.49 Aligned_cols=170 Identities=16% Similarity=0.280 Sum_probs=107.6
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhC--------CC------ceecChhhHhhcCCCEEEEecC
Q 044593 32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQL--------NA------PFFADLNDLCELHPDVVLLSTS 97 (335)
Q Consensus 32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~--------g~------~~~~~~~~~~~~~aDvVIlavp 97 (335)
|||+|||+|.||+.+|..|.++|++|++|+|+++..+...+. +. ..+++..+....++|+||+|||
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavk 80 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVP 80 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeC
Confidence 689999999999999999999999999999987655433331 11 1234555543147899999999
Q ss_pred chhHHHHHhhcccc-ccCCccEEEEcC-CCCc----hHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceeccccc
Q 044593 98 ILSTQSVLKSIPFQ-RLKRSTLFVDVL-SVKE----FPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRI 171 (335)
Q Consensus 98 ~~~~~~vl~~l~~~-~l~~~~iVvd~~-SvK~----~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~ 171 (335)
...+.++++++. + .+++++.|+.+. +... .+.+.+.+.++.. .+. .+.||....+...+.+..+. +
T Consensus 81 s~~~~~~l~~l~-~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~-~~~---~~~Gp~~a~~~~~~~~~~~~---~ 152 (326)
T PRK14620 81 TQQLRTICQQLQ-DCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNN-PIA---ILSGPSFAKEIAEKLPCSIV---L 152 (326)
T ss_pred HHHHHHHHHHHH-HhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCC-ceE---eecCCcHHHHHHcCCCcEEE---E
Confidence 999999999995 5 677776555442 2211 1234455555432 111 13366543222333333222 1
Q ss_pred CCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHhh
Q 044593 172 GNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQ 211 (335)
Q Consensus 172 ~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s 211 (335)
.+. +.+..+.+.++|..-+.+++..+.-....+.+++-
T Consensus 153 ~~~--~~~~~~~l~~~l~~~~~~~~~~~Di~g~~~~k~~~ 190 (326)
T PRK14620 153 AGQ--NETLGSSLISKLSNENLKIIYSQDIIGVQIGAALK 190 (326)
T ss_pred ecC--CHHHHHHHHHHHCCCCeEEEecCcchhhhhHHHHH
Confidence 222 23456788888988898888877666666555543
No 89
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=99.28 E-value=5.7e-10 Score=105.81 Aligned_cols=175 Identities=15% Similarity=0.117 Sum_probs=110.6
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce--------------ecChhhHhhcCCCEEE
Q 044593 28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF--------------FADLNDLCELHPDVVL 93 (335)
Q Consensus 28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~--------------~~~~~~~~~~~aDvVI 93 (335)
.+..|||+|||+|.||+.+|..|.++|++|+++.|++. +...+.|+.. .++.+ .. ..+|+||
T Consensus 2 ~~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~-~~~D~vi 77 (313)
T PRK06249 2 DSETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSAE-DM-PPCDWVL 77 (313)
T ss_pred CCcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcchh-hc-CCCCEEE
Confidence 35678999999999999999999999999999999862 2233444321 11222 23 5799999
Q ss_pred EecCchhHHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCC-cccc--cCCC-cceeccc
Q 044593 94 LSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPES-AKSS--WENL-PFMYDKV 169 (335)
Q Consensus 94 lavp~~~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~-~~~~--~~g~-~~i~~~~ 169 (335)
+|||..++.++++.+. +.+++++.|+.+...- ...+.+.+.++.. +++.+-...|... ++.. ..+. ...+..
T Consensus 78 lavK~~~~~~~~~~l~-~~~~~~~~iv~lqNG~-~~~e~l~~~~~~~-~v~~g~~~~~a~~~~pg~v~~~~~g~~~iG~- 153 (313)
T PRK06249 78 VGLKTTANALLAPLIP-QVAAPDAKVLLLQNGL-GVEEQLREILPAE-HLLGGLCFICSNRVGPGVIHHLAYGRVNLGY- 153 (313)
T ss_pred EEecCCChHhHHHHHh-hhcCCCCEEEEecCCC-CcHHHHHHHCCCC-cEEEEeeeEeEecCCCeEEEECCCCcEEEec-
Confidence 9999999999999885 6677887777764332 2346677777653 3443322222221 1100 1111 122211
Q ss_pred ccCCCh---hHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHhh
Q 044593 170 RIGNDE---ERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQ 211 (335)
Q Consensus 170 ~~~~~~---~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s 211 (335)
...+. ...+..+.+.++|+..|..+...+.-++..+..++.
T Consensus 154 -~~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~ 197 (313)
T PRK06249 154 -HSGPAADDGITARVEEGAALFRAAGIDSQAMPDLAQARWQKLVW 197 (313)
T ss_pred -CCCCcccchHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHhhe
Confidence 11111 013456678889999999887777777777666543
No 90
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=99.27 E-value=2.1e-10 Score=111.76 Aligned_cols=171 Identities=16% Similarity=0.119 Sum_probs=106.6
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHh----------------CCCce--ecChhhHhhcCCCEEE
Q 044593 32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ----------------LNAPF--FADLNDLCELHPDVVL 93 (335)
Q Consensus 32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~----------------~g~~~--~~~~~~~~~~~aDvVI 93 (335)
|||+|||+|.||..+|..|+. ||+|++||++++..+.+.+ .+... +.+..+++ .++|+||
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~-~~ad~vi 78 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAY-RDADYVI 78 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhh-cCCCEEE
Confidence 689999999999999988775 9999999999987765443 22222 23355555 7899999
Q ss_pred EecCch-----------hHHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCC
Q 044593 94 LSTSIL-----------STQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENL 162 (335)
Q Consensus 94 lavp~~-----------~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~ 162 (335)
+|||.. .+.++++.+. . ++++++|++.|++.....+.+.+.+.. ..+.. +|+...++-. .
T Consensus 79 i~Vpt~~~~k~~~~dl~~v~~v~~~i~-~-~~~g~lVV~~STv~pgtt~~l~~~~~~--~~v~~----~PE~l~~G~a-~ 149 (388)
T PRK15057 79 IATPTDYDPKTNYFNTSSVESVIKDVV-E-INPYAVMVIKSTVPVGFTAAMHKKYRT--ENIIF----SPEFLREGKA-L 149 (388)
T ss_pred EeCCCCCccCCCCcChHHHHHHHHHHH-h-cCCCCEEEEeeecCCchHHHHHHHhhc--CcEEE----CcccccCCcc-c
Confidence 999965 4567777774 4 688999999999887777777765432 12333 4443211100 0
Q ss_pred cceeccc--ccCCChhHHHHHHHHHHHHHh--cCCEEE-EeChHHHHHHHHHhhhhHHH
Q 044593 163 PFMYDKV--RIGNDEERIKRVDKFLDVFAK--EGCRMV-EMSCFDHDKYAAGSQFVTHT 216 (335)
Q Consensus 163 ~~i~~~~--~~~~~~~~~~~~~~v~~l~~~--~G~~v~-~~~~~eHD~~~A~~s~lph~ 216 (335)
..+..|. ++|.+. +..+.+.+++.. ++..+. .++.-+--+++.++.+.-+.
T Consensus 150 ~d~~~p~rvv~G~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a 205 (388)
T PRK15057 150 YDNLHPSRIVIGERS---ERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLA 205 (388)
T ss_pred ccccCCCEEEEEcCc---HHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHH
Confidence 1111121 124432 234556666643 444333 34444555677776655443
No 91
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=99.21 E-value=1.8e-11 Score=103.65 Aligned_cols=116 Identities=15% Similarity=0.139 Sum_probs=83.3
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcC-CeEEEEcCCCCcHH-HHHhCCC----ceecChhhHhhcCCCEEEEecCchhH-
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHH-HTLLVHSRSDHSPA-VRQQLNA----PFFADLNDLCELHPDVVLLSTSILST- 101 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G-~~V~~~dr~~~~~~-~a~~~g~----~~~~~~~~~~~~~aDvVIlavp~~~~- 101 (335)
.+.++|+|||+|.||.+++..|.+.| ++|+++||+++..+ .+.+.+. ....+..+.+ +++|+||+|+|....
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Dvvi~~~~~~~~~ 95 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELL-AEADLIINTTPVGMKP 95 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhcc-ccCCEEEeCcCCCCCC
Confidence 35689999999999999999999986 78999999986543 3444443 1344556655 789999999999874
Q ss_pred -HHHHhhccccccCCccEEEEcCCCCch--HHHHHHhhCCCCCceEeccccC
Q 044593 102 -QSVLKSIPFQRLKRSTLFVDVLSVKEF--PRNLFLKYLPQDFDILCTHPMF 150 (335)
Q Consensus 102 -~~vl~~l~~~~l~~~~iVvd~~SvK~~--~~~~l~~~l~~~~~~v~~HPma 150 (335)
..+... ...++++++|+|+++++.. ..+.++ ..+..|+.+|||.
T Consensus 96 ~~~~~~~--~~~~~~~~~v~D~~~~~~~~~l~~~~~---~~g~~~v~g~~~~ 142 (155)
T cd01065 96 GDELPLP--PSLLKPGGVVYDVVYNPLETPLLKEAR---ALGAKTIDGLEML 142 (155)
T ss_pred CCCCCCC--HHHcCCCCEEEEcCcCCCCCHHHHHHH---HCCCceeCCHHHH
Confidence 121111 1236789999999988763 333333 2466899999886
No 92
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=99.20 E-value=2.6e-09 Score=95.88 Aligned_cols=167 Identities=15% Similarity=0.200 Sum_probs=122.7
Q ss_pred CCeEEEEcccHH--------------------HHHHHHHHHHcCCeEEEEcCCCCc-----HHHHHhCCCceecChhhHh
Q 044593 31 SLKIAVIGFGNF--------------------GQFLAKAFARHHHTLLVHSRSDHS-----PAVRQQLNAPFFADLNDLC 85 (335)
Q Consensus 31 ~~kI~IIG~G~m--------------------G~siA~~L~~~G~~V~~~dr~~~~-----~~~a~~~g~~~~~~~~~~~ 85 (335)
+|||+|.|+|+- |+.+|..|+++||+|++.|+|.+. .+...+.|+..++|..+.+
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa 80 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAA 80 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhh
Confidence 478999999876 888999999999999999988642 4556778999888777777
Q ss_pred hcCCCEEEEecCch-hHHHHHhhccccccCCccEEEEcCCCCchHH-HHHHhhCC---CCCceEeccccCCCCCcccccC
Q 044593 86 ELHPDVVLLSTSIL-STQSVLKSIPFQRLKRSTLFVDVLSVKEFPR-NLFLKYLP---QDFDILCTHPMFGPESAKSSWE 160 (335)
Q Consensus 86 ~~~aDvVIlavp~~-~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~-~~l~~~l~---~~~~~v~~HPmaG~~~~~~~~~ 160 (335)
+++++.|+-||.. .+-.+.++|. ++++.|++|.++|++....+ ..++..+. .++.+-+.||-.-|.... +
T Consensus 81 -~~~Ei~VLFTPFGk~T~~Iarei~-~hvpEgAVicnTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~---h 155 (340)
T COG4007 81 -EHGEIHVLFTPFGKATFGIAREIL-EHVPEGAVICNTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQ---H 155 (340)
T ss_pred -hcceEEEEecccchhhHHHHHHHH-hhCcCCcEecccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCC---C
Confidence 8999999999999 6888999985 78999999999998866544 23344443 345577888866554422 2
Q ss_pred CCcceeccc-ccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHH
Q 044593 161 NLPFMYDKV-RIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDH 203 (335)
Q Consensus 161 g~~~i~~~~-~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eH 203 (335)
+. +++... .-+.+-..++.+++..++.++.|..+++++++--
T Consensus 156 ~~-yviagr~t~g~elATeEQi~r~velaes~Gk~~yv~padv~ 198 (340)
T COG4007 156 GH-YVIAGRSTEGKELATEEQIERCVELAESTGKEVYVLPADVV 198 (340)
T ss_pred ce-EEEeccCCCceeeccHHHHHHHHHHHHhcCCceEecCHHHH
Confidence 22 222111 0112224567889999999999999999986543
No 93
>PRK07574 formate dehydrogenase; Provisional
Probab=99.16 E-value=8.2e-10 Score=107.12 Aligned_cols=111 Identities=18% Similarity=0.308 Sum_probs=86.5
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHh
Q 044593 28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLK 106 (335)
Q Consensus 28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~ 106 (335)
...+++|||||+|.||..+|+.|+..|++|.+|||+....+.....|+....++++++ ++||+|++++|... +..++.
T Consensus 189 ~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell-~~aDvV~l~lPlt~~T~~li~ 267 (385)
T PRK07574 189 DLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLV-SVCDVVTIHCPLHPETEHLFD 267 (385)
T ss_pred ecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHh-hcCCEEEEcCCCCHHHHHHhC
Confidence 4568899999999999999999999999999999987444434456766667888988 89999999999765 566665
Q ss_pred hccccccCCccEEEEcCCCCchHHHHHHhhCCC
Q 044593 107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQ 139 (335)
Q Consensus 107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~ 139 (335)
+-....+++|+++++++..+..-.+.+.+.+..
T Consensus 268 ~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~s 300 (385)
T PRK07574 268 ADVLSRMKRGSYLVNTARGKIVDRDAVVRALES 300 (385)
T ss_pred HHHHhcCCCCcEEEECCCCchhhHHHHHHHHHh
Confidence 321246899999999987765555666555543
No 94
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.15 E-value=1.6e-09 Score=103.43 Aligned_cols=170 Identities=17% Similarity=0.188 Sum_probs=114.8
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhC-------------------C-CceecChhhHhhcCCCE
Q 044593 32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQL-------------------N-APFFADLNDLCELHPDV 91 (335)
Q Consensus 32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~-------------------g-~~~~~~~~~~~~~~aDv 91 (335)
|||+|||.|-+|...+.+|++.||+|+++|.+++..+...+- | +..++|..++. +++|+
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~-~~adv 79 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAV-KDADV 79 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHH-hcCCE
Confidence 899999999999999999999999999999998877644331 1 23567777777 89999
Q ss_pred EEEecCchh----------HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCC---c-eEeccccCCCCCccc
Q 044593 92 VLLSTSILS----------TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDF---D-ILCTHPMFGPESAKS 157 (335)
Q Consensus 92 VIlavp~~~----------~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~---~-~v~~HPmaG~~~~~~ 157 (335)
+|+|||... +..+++++. +.++..++|+.=|+|.....+.+.+.+.... . -|.+.|-|=.|..+
T Consensus 80 ~fIavgTP~~~dg~aDl~~V~ava~~i~-~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPEFLREG~A- 157 (414)
T COG1004 80 VFIAVGTPPDEDGSADLSYVEAVAKDIG-EILDGKAVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASNPEFLREGSA- 157 (414)
T ss_pred EEEEcCCCCCCCCCccHHHHHHHHHHHH-hhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccCCceEecChHHhcCcch-
Confidence 999997643 677888885 5676668888888887666666665443211 1 24556666555321
Q ss_pred ccCCCcceecccc--cCCChhHHHHHHHHHHHHHhc---CCEEEEeChHHHHHHHHHhh
Q 044593 158 SWENLPFMYDKVR--IGNDEERIKRVDKFLDVFAKE---GCRMVEMSCFDHDKYAAGSQ 211 (335)
Q Consensus 158 ~~~g~~~i~~~~~--~~~~~~~~~~~~~v~~l~~~~---G~~v~~~~~~eHD~~~A~~s 211 (335)
...++.|.+ +|.... ...+.++++++.+ ...+++++..+- +++.|.+
T Consensus 158 ----v~D~~~PdRIViG~~~~--~a~~~~~ely~~~~~~~~p~l~t~~~~A-E~IKyaa 209 (414)
T COG1004 158 ----VYDFLYPDRIVIGVRSE--RAAAVLRELYAPFLRQDVPILFTDLREA-ELIKYAA 209 (414)
T ss_pred ----hhhccCCCeEEEccCCh--hHHHHHHHHHhhhhhcCCCEEEecchHH-HHHHHHH
Confidence 112333332 354322 2456667777664 777888877664 3555544
No 95
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=99.14 E-value=6.7e-09 Score=98.17 Aligned_cols=236 Identities=13% Similarity=0.113 Sum_probs=139.7
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceec------------ChhhHhhcCCCEEEEecCch
Q 044593 32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFA------------DLNDLCELHPDVVLLSTSIL 99 (335)
Q Consensus 32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~------------~~~~~~~~~aDvVIlavp~~ 99 (335)
|||+|+|+|.||+.++..|.++|++|+++.|++. .+..++.|+.... +..+.. ..+|+||++|+..
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~-~~~Dlviv~vKa~ 78 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEAL-GPADLVIVTVKAY 78 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChhhc-CCCCEEEEEeccc
Confidence 7999999999999999999999999999998876 5545565653211 112222 5799999999999
Q ss_pred hHHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEe-ccccCCCCCcccc--cCC-CcceecccccCCCh
Q 044593 100 STQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILC-THPMFGPESAKSS--WEN-LPFMYDKVRIGNDE 175 (335)
Q Consensus 100 ~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~-~HPmaG~~~~~~~--~~g-~~~i~~~~~~~~~~ 175 (335)
++.++++.+. +.+++.+.|+-+-..-+ ..+.+.+.++.. +++. .-+..+...++.. +.| -.+.+.. -++
T Consensus 79 q~~~al~~l~-~~~~~~t~vl~lqNG~g-~~e~l~~~~~~~-~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~----~~~ 151 (307)
T COG1893 79 QLEEALPSLA-PLLGPNTVVLFLQNGLG-HEEELRKILPKE-TVLGGVTTHGAVREGPGHVVHTGLGDTVIGE----LRG 151 (307)
T ss_pred cHHHHHHHhh-hcCCCCcEEEEEeCCCc-HHHHHHHhCCcc-eEEEEEeeeeeEecCCceEEEecCCcEEEcc----CCC
Confidence 9999999996 78899987775533222 335777777654 2332 2222221111111 122 1112211 111
Q ss_pred hHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHhhhhHHH-HHHHH--------------------HHcC-----CCCC
Q 044593 176 ERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHT-MGRVL--------------------ERFG-----VESS 229 (335)
Q Consensus 176 ~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~-la~aL--------------------~~~~-----~~~~ 229 (335)
...+.++.+.++|+..|..+.+.+.-++..+-.++-..+.= +...| +... ..-.
T Consensus 152 ~~~~~~~~i~~~~~~a~~~~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~~~~g~ 231 (307)
T COG1893 152 GRDELVKALAELFKEAGLEVELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVARAEGV 231 (307)
T ss_pred CchHHHHHHHHHHHhCCCCeEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHHHhccC
Confidence 22356788888899999998888777777765554333221 11000 0000 0001
Q ss_pred CCCCcchhhHHHHHHHh-hCCChHhHHHHHhhCHhHHHHHHHHHHHHH
Q 044593 230 PINTKGYETLLDLVDNT-KGDSFDLYYGLFMYNKNSLEQLQRLEMAFE 276 (335)
Q Consensus 230 ~~~~~gf~~~~rl~~~i-a~~~~~lw~~I~~~N~~~~~~l~~~~~~l~ 276 (335)
.+.-..++.+.+....+ +..-+.|+.|+....+-.++.|.-+.-.+.
T Consensus 232 ~~~~~~~~~v~~~~~~~~~~~~sSM~qDl~~gr~tEid~i~G~vv~~a 279 (307)
T COG1893 232 ELPEEVVERVLAVIRATDAENYSSMLQDLEKGRPTEIDAINGAVVRLA 279 (307)
T ss_pred CCCHHHHHHHHHHHHhcccccCchHHHHHHcCCcccHHHHhhHHHHHH
Confidence 12222244455555555 466778888887654434566655544433
No 96
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=99.13 E-value=9.9e-11 Score=102.08 Aligned_cols=110 Identities=16% Similarity=0.313 Sum_probs=78.9
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHh
Q 044593 28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLK 106 (335)
Q Consensus 28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~ 106 (335)
...+++|||||+|.||..+|+.++..|++|++|||+..........++ ...++++++ ++||+|++++|... +..++.
T Consensus 33 ~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~-~~~~l~ell-~~aDiv~~~~plt~~T~~li~ 110 (178)
T PF02826_consen 33 ELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGV-EYVSLDELL-AQADIVSLHLPLTPETRGLIN 110 (178)
T ss_dssp -STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTE-EESSHHHHH-HH-SEEEE-SSSSTTTTTSBS
T ss_pred ccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccc-eeeehhhhc-chhhhhhhhhccccccceeee
Confidence 456899999999999999999999999999999999876544555565 445888888 78999999999643 333333
Q ss_pred hccccccCCccEEEEcCCCCchHHHHHHhhCCC
Q 044593 107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQ 139 (335)
Q Consensus 107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~ 139 (335)
.-....+++|+++++++-....-.+.+.+.+..
T Consensus 111 ~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~ 143 (178)
T PF02826_consen 111 AEFLAKMKPGAVLVNVARGELVDEDALLDALES 143 (178)
T ss_dssp HHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHT
T ss_pred eeeeeccccceEEEeccchhhhhhhHHHHHHhh
Confidence 211245789999999986655545556555543
No 97
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.11 E-value=8.9e-10 Score=104.39 Aligned_cols=170 Identities=14% Similarity=0.146 Sum_probs=119.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHH-HHhC----CCceecChhhHhh--cCCCEEEEecCchh-H
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAV-RQQL----NAPFFADLNDLCE--LHPDVVLLSTSILS-T 101 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~-a~~~----g~~~~~~~~~~~~--~~aDvVIlavp~~~-~ 101 (335)
....||+||+|.||+.+|..+.++|+.|.+|+|+.+..+. ..+. .+....++++++. +...-|++.|.... +
T Consensus 2 ~~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~V 81 (473)
T COG0362 2 MKADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPV 81 (473)
T ss_pred CccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcH
Confidence 4567999999999999999999999999999999876543 3332 3445667777641 57888999888753 6
Q ss_pred HHHHhhccccccCCccEEEEcCCCC-chHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHH
Q 044593 102 QSVLKSIPFQRLKRSTLFVDVLSVK-EFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKR 180 (335)
Q Consensus 102 ~~vl~~l~~~~l~~~~iVvd~~SvK-~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~ 180 (335)
..++++|. |++.+|.+|+|-+++. ..+.+..++.-..+..|||+ -+.|.|.++ ..| |-++. ++ ++++
T Consensus 82 D~~I~~L~-p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~-GVSGGEeGA--~~G-PSiMp----GG---~~ea 149 (473)
T COG0362 82 DAVIEQLL-PLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGM-GVSGGEEGA--RHG-PSIMP----GG---QKEA 149 (473)
T ss_pred HHHHHHHH-hhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEec-ccccccccc--ccC-CCcCC----CC---CHHH
Confidence 78889995 8999999999987654 34556666555678899986 477777543 133 33431 33 3568
Q ss_pred HHHHHHHHHhcCCE------EEEeChHHHHHHHHHhh
Q 044593 181 VDKFLDVFAKEGCR------MVEMSCFDHDKYAAGSQ 211 (335)
Q Consensus 181 ~~~v~~l~~~~G~~------v~~~~~~eHD~~~A~~s 211 (335)
++.++++|..+.++ +.++.+.--...+.+++
T Consensus 150 y~~v~pil~~IaAk~~g~pCc~~iG~~GAGHfVKmVH 186 (473)
T COG0362 150 YELVAPILTKIAAKVDGEPCCTWIGPDGAGHFVKMVH 186 (473)
T ss_pred HHHHHHHHHHHHhhcCCCCceeeECCCCCCceeeeee
Confidence 88889988877543 34555544333444433
No 98
>PLN03139 formate dehydrogenase; Provisional
Probab=99.11 E-value=2.4e-09 Score=103.83 Aligned_cols=111 Identities=19% Similarity=0.322 Sum_probs=86.2
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHh
Q 044593 28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLK 106 (335)
Q Consensus 28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~ 106 (335)
...+++|||||+|.||..+|+.|+..|++|.+||++....+...+.|+....++++++ .+||+|++++|... +..++.
T Consensus 196 ~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell-~~sDvV~l~lPlt~~T~~li~ 274 (386)
T PLN03139 196 DLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAML-PKCDVVVINTPLTEKTRGMFN 274 (386)
T ss_pred CCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHH-hhCCEEEEeCCCCHHHHHHhC
Confidence 4578999999999999999999999999999999986544444556776666889988 89999999999654 566664
Q ss_pred hccccccCCccEEEEcCCCCchHHHHHHhhCCC
Q 044593 107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQ 139 (335)
Q Consensus 107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~ 139 (335)
.-....+++|+++++++-....-.+.+.+.+..
T Consensus 275 ~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~s 307 (386)
T PLN03139 275 KERIAKMKKGVLIVNNARGAIMDTQAVADACSS 307 (386)
T ss_pred HHHHhhCCCCeEEEECCCCchhhHHHHHHHHHc
Confidence 321356899999999987655555666666543
No 99
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=99.08 E-value=4.5e-09 Score=104.73 Aligned_cols=175 Identities=19% Similarity=0.157 Sum_probs=109.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcC--CeEEEEcCCCCcHHHHHhCC-------------------CceecChhhHhhcCC
Q 044593 31 SLKIAVIGFGNFGQFLAKAFARHH--HTLLVHSRSDHSPAVRQQLN-------------------APFFADLNDLCELHP 89 (335)
Q Consensus 31 ~~kI~IIG~G~mG~siA~~L~~~G--~~V~~~dr~~~~~~~a~~~g-------------------~~~~~~~~~~~~~~a 89 (335)
+|||+|||+|.+|..+|..|+++| ++|+++|.+++..+...+-+ +..+++..+.+ .++
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i-~~a 79 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHV-AEA 79 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHH-hcC
Confidence 589999999999999999999885 78999999987766433211 22445556555 799
Q ss_pred CEEEEecCch---------------hHHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCC---CC-ceEeccccC
Q 044593 90 DVVLLSTSIL---------------STQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQ---DF-DILCTHPMF 150 (335)
Q Consensus 90 DvVIlavp~~---------------~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~---~~-~~v~~HPma 150 (335)
|++|+|||.. .+.++++++. +.++++++|+--+++...+.+.+.+.+.. +. .++...|-+
T Consensus 80 dvi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~-~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v~~~PEr 158 (473)
T PLN02353 80 DIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIA-DVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPEF 158 (473)
T ss_pred CEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHH-hhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEEEECCCc
Confidence 9999998622 3577888885 67889999887777665555555443321 22 245555655
Q ss_pred CCCCcc-cccCCCcceecccccCCC--hhHHHHHHHHHHHHHhcC--CEEEEeChHHHHHHHHHhhh
Q 044593 151 GPESAK-SSWENLPFMYDKVRIGND--EERIKRVDKFLDVFAKEG--CRMVEMSCFDHDKYAAGSQF 212 (335)
Q Consensus 151 G~~~~~-~~~~g~~~i~~~~~~~~~--~~~~~~~~~v~~l~~~~G--~~v~~~~~~eHD~~~A~~s~ 212 (335)
-.+-.. ..+...+-++ +++. +...+..+.++++++.+- ..++.++++ .-+++.++..
T Consensus 159 l~~G~a~~d~~~p~riV----iG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~-~AE~~K~~eN 220 (473)
T PLN02353 159 LAEGTAIEDLFKPDRVL----IGGRETPEGQKAVQALKDVYAHWVPEERIITTNLW-SAELSKLAAN 220 (473)
T ss_pred cCCCCcccccCCCCEEE----EccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHH-HHHHHHHHHH
Confidence 433210 1111122121 2432 222446678888888773 345555554 3455555443
No 100
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=99.07 E-value=1.9e-10 Score=100.95 Aligned_cols=98 Identities=26% Similarity=0.284 Sum_probs=68.3
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhC--------------------CCceecChhhHhhcCCCE
Q 044593 32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQL--------------------NAPFFADLNDLCELHPDV 91 (335)
Q Consensus 32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~--------------------g~~~~~~~~~~~~~~aDv 91 (335)
|||+|||+|.+|..+|..|++.||+|+++|.|++..+...+- .+..+++..+.+ .++|+
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai-~~adv 79 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAI-KDADV 79 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHH-HH-SE
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhh-hccce
Confidence 899999999999999999999999999999998876643321 112345666655 78999
Q ss_pred EEEecCchh----------HHHHHhhccccccCCccEEEEcCCCCchHHH
Q 044593 92 VLLSTSILS----------TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRN 131 (335)
Q Consensus 92 VIlavp~~~----------~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~ 131 (335)
+|+|+|... +.++++.+. +.++++++|+--|++.....+
T Consensus 80 ~~I~VpTP~~~~~~~Dls~v~~a~~~i~-~~l~~~~lvV~~STvppGtt~ 128 (185)
T PF03721_consen 80 VFICVPTPSDEDGSPDLSYVESAIESIA-PVLRPGDLVVIESTVPPGTTE 128 (185)
T ss_dssp EEE----EBETTTSBETHHHHHHHHHHH-HHHCSCEEEEESSSSSTTHHH
T ss_pred EEEecCCCccccCCccHHHHHHHHHHHH-HHHhhcceEEEccEEEEeeeh
Confidence 999998542 677888885 678899999988877765555
No 101
>PRK13243 glyoxylate reductase; Reviewed
Probab=99.05 E-value=9e-10 Score=105.29 Aligned_cols=109 Identities=23% Similarity=0.345 Sum_probs=83.0
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHh
Q 044593 28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLK 106 (335)
Q Consensus 28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~ 106 (335)
...+++|||||+|.||+.+|+.|+..|++|.+|||++.... ....|+. ..++++++ ++||+|++++|... +..++.
T Consensus 147 ~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~~~~-~~~l~ell-~~aDiV~l~lP~t~~T~~~i~ 223 (333)
T PRK13243 147 DVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEA-EKELGAE-YRPLEELL-RESDFVSLHVPLTKETYHMIN 223 (333)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhh-HHHcCCE-ecCHHHHH-hhCCEEEEeCCCChHHhhccC
Confidence 35689999999999999999999999999999999875432 3344554 34788887 89999999999765 555553
Q ss_pred -hccccccCCccEEEEcCCCCchHHHHHHhhCCCC
Q 044593 107 -SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQD 140 (335)
Q Consensus 107 -~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~ 140 (335)
+. ...+++++++++++.......+++.+.+..+
T Consensus 224 ~~~-~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g 257 (333)
T PRK13243 224 EER-LKLMKPTAILVNTARGKVVDTKALVKALKEG 257 (333)
T ss_pred HHH-HhcCCCCeEEEECcCchhcCHHHHHHHHHcC
Confidence 22 2468999999999877655556666666443
No 102
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=99.03 E-value=1.5e-09 Score=103.54 Aligned_cols=106 Identities=14% Similarity=0.232 Sum_probs=79.2
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHH-
Q 044593 28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVL- 105 (335)
Q Consensus 28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl- 105 (335)
...+++|+|||+|.||+++|+.|+..|++|++||+++..... ......++++++ ++||+|++++|... +..++
T Consensus 143 ~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~----~~~~~~~l~ell-~~aDiVil~lP~t~~t~~li~ 217 (330)
T PRK12480 143 PVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLD----FLTYKDSVKEAI-KDADIISLHVPANKESYHLFD 217 (330)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhh----hhhccCCHHHHH-hcCCEEEEeCCCcHHHHHHHh
Confidence 356789999999999999999999999999999998754321 122345778887 89999999999875 34444
Q ss_pred hhccccccCCccEEEEcCCCCchHHHHHHhhCCC
Q 044593 106 KSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQ 139 (335)
Q Consensus 106 ~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~ 139 (335)
+.+ ...+++|+++++++-....-...+.+.+..
T Consensus 218 ~~~-l~~mk~gavlIN~aRG~~vd~~aL~~aL~~ 250 (330)
T PRK12480 218 KAM-FDHVKKGAILVNAARGAVINTPDLIAAVND 250 (330)
T ss_pred HHH-HhcCCCCcEEEEcCCccccCHHHHHHHHHc
Confidence 333 356889999999986554444555555543
No 103
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.03 E-value=1.4e-08 Score=91.53 Aligned_cols=173 Identities=18% Similarity=0.176 Sum_probs=132.0
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCC----eEEEEcCCCCcHHH-HHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHh
Q 044593 32 LKIAVIGFGNFGQFLAKAFARHHH----TLLVHSRSDHSPAV-RQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLK 106 (335)
Q Consensus 32 ~kI~IIG~G~mG~siA~~L~~~G~----~V~~~dr~~~~~~~-a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~ 106 (335)
|+|++||.|.|..++++.+.+.|. +++.+-.+...... .+..|+..+.+..+.. +.+|++++|+++..+..++.
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~g~~~~~~n~~~~-~~s~v~~~svKp~~i~~vls 79 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEALGVKTVFTNLEVL-QASDVVFLSVKPQVIESVLS 79 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhcCCceeeechHHHH-hhccceeEeecchhHHHHhh
Confidence 689999999999999999999985 67777775544443 7788887665556666 78999999999999999999
Q ss_pred hccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHHH
Q 044593 107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLD 186 (335)
Q Consensus 107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~ 186 (335)
++. +.+..+.+|+.+.-.+ .+..+++.++...+++...|......+ .|.. ++.. ++ ....++.+.+++
T Consensus 80 ~~~-~~~~~~~iivS~aaG~--tl~~l~~~l~~~~rviRvmpNtp~~v~----eg~s-v~~~---g~-~~~~~D~~l~~~ 147 (267)
T KOG3124|consen 80 EIK-PKVSKGKIIVSVAAGK--TLSSLESKLSPPTRVIRVMPNTPSVVG----EGAS-VYAI---GC-HATNEDLELVEE 147 (267)
T ss_pred cCc-cccccceEEEEEeecc--cHHHHHHhcCCCCceEEecCCChhhhh----cCcE-EEee---CC-CcchhhHHHHHH
Confidence 995 5577888999886553 346777777766678998887766554 3444 2221 22 233445688899
Q ss_pred HHHhcCCEEEEeChHHHHHHHHHhhhhHHHHH
Q 044593 187 VFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMG 218 (335)
Q Consensus 187 l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la 218 (335)
++..+|. +..+++.--|.++++.-.-|-..-
T Consensus 148 ll~~vG~-~~evpE~~iDavTgLsGSgPAy~f 178 (267)
T KOG3124|consen 148 LLSAVGL-CEEVPEKCIDAVTGLSGSGPAYVF 178 (267)
T ss_pred HHHhcCc-ceeCcHHhhhHHhhccCCcHHHHH
Confidence 9999994 888999999999999888877543
No 104
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=99.00 E-value=1.7e-09 Score=101.57 Aligned_cols=161 Identities=16% Similarity=0.201 Sum_probs=104.2
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHh-
Q 044593 28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLK- 106 (335)
Q Consensus 28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~- 106 (335)
..+.++|+|||+|.||..+|+.|+..|++|+++++.....+.+...|+.. .++++++ +.||+|++++|......++.
T Consensus 13 ~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v-~sl~Eaa-k~ADVV~llLPd~~t~~V~~~ 90 (335)
T PRK13403 13 LLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEV-MSVSEAV-RTAQVVQMLLPDEQQAHVYKA 90 (335)
T ss_pred hhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEE-CCHHHHH-hcCCEEEEeCCChHHHHHHHH
Confidence 45788999999999999999999999999999987655555566778754 3788888 89999999999877777774
Q ss_pred hccccccCCccEEEEcCCCCchHHHHHHhh-CCCCCceEeccccCCCCCccccc---CCCcceecccccCCChhHHHHHH
Q 044593 107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKY-LPQDFDILCTHPMFGPESAKSSW---ENLPFMYDKVRIGNDEERIKRVD 182 (335)
Q Consensus 107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~-l~~~~~~v~~HPmaG~~~~~~~~---~g~~~i~~~~~~~~~~~~~~~~~ 182 (335)
++ .+.+++|++++=.-+-.- ..... .|.++.++-.-|=...+.-.+.| .|.|.++. +-.|. +-.+.+
T Consensus 91 ei-l~~MK~GaiL~f~hgfni----~~~~i~pp~~vdv~mvaPKgpG~~vR~~y~~G~Gvp~l~a---v~qd~-sg~a~~ 161 (335)
T PRK13403 91 EV-EENLREGQMLLFSHGFNI----HFGQINPPSYVDVAMVAPKSPGHLVRRVFQEGNGVPALVA---VHQDA-TGTALH 161 (335)
T ss_pred HH-HhcCCCCCEEEECCCcce----ecCceeCCCCCeEEEECCCCCChHHHHHHHcCCCceeEEE---EEECC-CCcHHH
Confidence 45 367899987765432211 01112 24566655444422111101111 46676653 11111 112445
Q ss_pred HHHHHHHhcCCE---EEEeC
Q 044593 183 KFLDVFAKEGCR---MVEMS 199 (335)
Q Consensus 183 ~v~~l~~~~G~~---v~~~~ 199 (335)
......+.+|+. ++..+
T Consensus 162 ~ala~a~~iG~~ragv~~tt 181 (335)
T PRK13403 162 VALAYAKGVGCTRAGVIETT 181 (335)
T ss_pred HHHHHHHHcCCCceeEEecc
Confidence 666777888876 55554
No 105
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=98.99 E-value=5.7e-09 Score=99.16 Aligned_cols=111 Identities=13% Similarity=0.209 Sum_probs=83.9
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHh
Q 044593 28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLK 106 (335)
Q Consensus 28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~ 106 (335)
...++++||||+|.||+.+|..++..|++|.+||+..... .....+.....++++++ ++||+|++.+|... +..++.
T Consensus 139 el~gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~-~~~~~~~~~~~~Ld~lL-~~sDiv~lh~PlT~eT~g~i~ 216 (324)
T COG0111 139 ELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRE-RAGVDGVVGVDSLDELL-AEADILTLHLPLTPETRGLIN 216 (324)
T ss_pred cccCCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchh-hhccccceecccHHHHH-hhCCEEEEcCCCCcchhcccC
Confidence 3458899999999999999999999999999999943222 23344566667899998 89999999999764 666665
Q ss_pred hccccccCCccEEEEcCCCCchHHHHHHhhCCCC
Q 044593 107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQD 140 (335)
Q Consensus 107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~ 140 (335)
.-....+|+|+++++++-......+.+.+.+..+
T Consensus 217 ~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G 250 (324)
T COG0111 217 AEELAKMKPGAILINAARGGVVDEDALLAALDSG 250 (324)
T ss_pred HHHHhhCCCCeEEEECCCcceecHHHHHHHHHcC
Confidence 3323468999999999866555555666555443
No 106
>PRK06436 glycerate dehydrogenase; Provisional
Probab=98.97 E-value=1.4e-08 Score=95.83 Aligned_cols=106 Identities=16% Similarity=0.280 Sum_probs=78.9
Q ss_pred cCCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCc-eecChhhHhhcCCCEEEEecCchh-HHHH
Q 044593 27 VKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAP-FFADLNDLCELHPDVVLLSTSILS-TQSV 104 (335)
Q Consensus 27 ~~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~-~~~~~~~~~~~~aDvVIlavp~~~-~~~v 104 (335)
....+++|||||+|.||..+|+.++..|++|++|||+... .+.. ...++++++ .+||+|++++|... +..+
T Consensus 118 ~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~------~~~~~~~~~l~ell-~~aDiv~~~lp~t~~T~~l 190 (303)
T PRK06436 118 KLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN------DGISSIYMEPEDIM-KKSDFVLISLPLTDETRGM 190 (303)
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc------cCcccccCCHHHHH-hhCCEEEECCCCCchhhcC
Confidence 3567899999999999999999999889999999997532 1322 245788888 89999999999764 4555
Q ss_pred HhhccccccCCccEEEEcCCCCchHHHHHHhhCCC
Q 044593 105 LKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQ 139 (335)
Q Consensus 105 l~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~ 139 (335)
+..=....+++|+++++++.....-.+.+.+.+..
T Consensus 191 i~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~ 225 (303)
T PRK06436 191 INSKMLSLFRKGLAIINVARADVVDKNDMLNFLRN 225 (303)
T ss_pred cCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHc
Confidence 44211245889999999987655555566555543
No 107
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.97 E-value=2.1e-09 Score=91.01 Aligned_cols=91 Identities=22% Similarity=0.206 Sum_probs=70.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC-cHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHH-hh
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH-SPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVL-KS 107 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~-~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl-~~ 107 (335)
+.++|+|||+|..|.+.|..|++.|++|++..|... +.+.|++.|.... +..+++ +++|+|++.+|+....+++ ++
T Consensus 3 ~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~-~~~eAv-~~aDvV~~L~PD~~q~~vy~~~ 80 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVM-SVAEAV-KKADVVMLLLPDEVQPEVYEEE 80 (165)
T ss_dssp CTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECC-EHHHHH-HC-SEEEE-S-HHHHHHHHHHH
T ss_pred CCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeec-cHHHHH-hhCCEEEEeCChHHHHHHHHHH
Confidence 468999999999999999999999999998888876 7788999999765 456666 8999999999999999998 66
Q ss_pred ccccccCCccEEEEcC
Q 044593 108 IPFQRLKRSTLFVDVL 123 (335)
Q Consensus 108 l~~~~l~~~~iVvd~~ 123 (335)
+. +.+++|+.++-.-
T Consensus 81 I~-p~l~~G~~L~fah 95 (165)
T PF07991_consen 81 IA-PNLKPGATLVFAH 95 (165)
T ss_dssp HH-HHS-TT-EEEESS
T ss_pred HH-hhCCCCCEEEeCC
Confidence 74 7899998877543
No 108
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=98.96 E-value=2e-08 Score=95.71 Aligned_cols=170 Identities=17% Similarity=0.117 Sum_probs=102.0
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHh-------------------CC-CceecChhhHhhcCCCE
Q 044593 32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ-------------------LN-APFFADLNDLCELHPDV 91 (335)
Q Consensus 32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~-------------------~g-~~~~~~~~~~~~~~aDv 91 (335)
++|+|||+|-||--+|..++++|++|+++|.|+...+...+ .| +..+++..++ +.||+
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l--~~~dv 87 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEEL--KECDV 87 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhc--ccCCE
Confidence 89999999999999999999999999999999876653322 12 2345666665 68999
Q ss_pred EEEecCchh----------HHHHHhhccccccCCccEEEEcCCCCchHHHHH----Hhh---CCCCCceEeccccCCCCC
Q 044593 92 VLLSTSILS----------TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLF----LKY---LPQDFDILCTHPMFGPES 154 (335)
Q Consensus 92 VIlavp~~~----------~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l----~~~---l~~~~~~v~~HPmaG~~~ 154 (335)
+|+|||... +....+.++ +.+++|.+|+-=|++.....+.+ .+. |..+..|--.| .||.
T Consensus 88 ~iI~VPTPl~~~~~pDls~v~~aa~sIa-~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~lay---sPER 163 (436)
T COG0677 88 FIICVPTPLKKYREPDLSYVESAARSIA-PVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAY---SPER 163 (436)
T ss_pred EEEEecCCcCCCCCCChHHHHHHHHHHH-HhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEee---Cccc
Confidence 999998642 566777785 78999998886555544333333 222 11112232222 3443
Q ss_pred cccccCCCcceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHH
Q 044593 155 AKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAG 209 (335)
Q Consensus 155 ~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~ 209 (335)
-..+-.-.-..-.+.++++. ++...+....|.+.+=-.++.++...-.+++.+
T Consensus 164 v~PG~~~~el~~~~kVIgG~--tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl 216 (436)
T COG0677 164 VLPGNVLKELVNNPKVIGGV--TPKCAELAAALYKTIVEGVIPVTSARTAEMVKL 216 (436)
T ss_pred cCCCchhhhhhcCCceeecC--CHHHHHHHHHHHHHheEEEEEcCChHHHHHHHH
Confidence 21110000111112234433 244556667777776545666654444444444
No 109
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=98.95 E-value=2.5e-08 Score=94.27 Aligned_cols=171 Identities=13% Similarity=0.102 Sum_probs=107.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHh-CCCceec-----------ChhhHhhcCCCEEEEecCc
Q 044593 31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ-LNAPFFA-----------DLNDLCELHPDVVLLSTSI 98 (335)
Q Consensus 31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~-~g~~~~~-----------~~~~~~~~~aDvVIlavp~ 98 (335)
.|||+|||+|.||+.+|..|.+.|++|++++|+++..+..++ .|+.... ...+.. ..+|+||+||+.
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~-~~~D~viv~vK~ 80 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAA-EPIHRLLLACKA 80 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccc-cccCEEEEECCH
Confidence 479999999999999999999999999999998765554443 3442110 001112 468999999999
Q ss_pred hhHHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCC-ccc--ccCCC-cceecccccCCC
Q 044593 99 LSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPES-AKS--SWENL-PFMYDKVRIGND 174 (335)
Q Consensus 99 ~~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~-~~~--~~~g~-~~i~~~~~~~~~ 174 (335)
..+.++++.+. +.+.+++.|+-+-+.- ...+.+.+.++.. +++++--..|... ++. ...+. .+.+ +..
T Consensus 81 ~~~~~al~~l~-~~l~~~t~vv~lQNGv-~~~e~l~~~~~~~-~v~~g~~~~ga~~~~pg~v~~~~~g~~~~-----G~~ 152 (305)
T PRK05708 81 YDAEPAVASLA-HRLAPGAELLLLQNGL-GSQDAVAARVPHA-RCIFASSTEGAFRDGDWRVVFAGHGFTWL-----GDP 152 (305)
T ss_pred HhHHHHHHHHH-hhCCCCCEEEEEeCCC-CCHHHHHHhCCCC-cEEEEEeeeceecCCCCEEEEeceEEEEE-----cCC
Confidence 99999999995 7888888877663322 2335566677654 2333222222221 110 01121 1122 221
Q ss_pred hhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHhhh
Q 044593 175 EERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQF 212 (335)
Q Consensus 175 ~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~ 212 (335)
. .+..+.+.++|...|..+...+.-+...+..++..
T Consensus 153 ~--~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N 188 (305)
T PRK05708 153 R--NPTAPAWLDDLREAGIPHEWTVDILTRLWRKLALN 188 (305)
T ss_pred C--CcchHHHHHHHHhcCCCCccCHHHHHHHHHHHHHH
Confidence 1 12356677888888887776666677777666543
No 110
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=98.93 E-value=5.2e-09 Score=98.04 Aligned_cols=94 Identities=22% Similarity=0.323 Sum_probs=73.1
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCcee--cChhhHhhcCCCEEEEecCchhH-HHHH
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFF--ADLNDLCELHPDVVLLSTSILST-QSVL 105 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~--~~~~~~~~~~aDvVIlavp~~~~-~~vl 105 (335)
..+.+|+|||+|.||..+|+.|+..|++|++++|+++....+.+.|.... .++.+.+ .++|+||.++|...+ .+.+
T Consensus 149 l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l-~~aDiVint~P~~ii~~~~l 227 (287)
T TIGR02853 149 IHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKV-AEIDIVINTIPALVLTADVL 227 (287)
T ss_pred CCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHh-ccCCEEEECCChHHhCHHHH
Confidence 35689999999999999999999999999999999876655666665432 3455666 799999999997643 2222
Q ss_pred hhccccccCCccEEEEcCCCCch
Q 044593 106 KSIPFQRLKRSTLFVDVLSVKEF 128 (335)
Q Consensus 106 ~~l~~~~l~~~~iVvd~~SvK~~ 128 (335)
..++++++|+|+++.+..
T Consensus 228 -----~~~k~~aliIDlas~Pg~ 245 (287)
T TIGR02853 228 -----SKLPKHAVIIDLASKPGG 245 (287)
T ss_pred -----hcCCCCeEEEEeCcCCCC
Confidence 346789999999987654
No 111
>PRK08605 D-lactate dehydrogenase; Validated
Probab=98.93 E-value=4.8e-09 Score=100.32 Aligned_cols=106 Identities=20% Similarity=0.288 Sum_probs=76.5
Q ss_pred CCCCCeEEEEcccHHHHHHHHHH-HHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHH-HHH
Q 044593 28 KSTSLKIAVIGFGNFGQFLAKAF-ARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQ-SVL 105 (335)
Q Consensus 28 ~~~~~kI~IIG~G~mG~siA~~L-~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~-~vl 105 (335)
...+++|+|||+|.||+++|+.| ...|++|++||+++.... ..++....++++++ +++|+|++++|..... .++
T Consensus 143 ~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~---~~~~~~~~~l~ell-~~aDvIvl~lP~t~~t~~li 218 (332)
T PRK08605 143 SIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKA---ATYVDYKDTIEEAV-EGADIVTLHMPATKYNHYLF 218 (332)
T ss_pred eeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhH---HhhccccCCHHHHH-HhCCEEEEeCCCCcchhhhc
Confidence 34678999999999999999999 456889999999865321 12334445788888 8999999999987643 333
Q ss_pred h-hccccccCCccEEEEcCCCCchHHHHHHhhCC
Q 044593 106 K-SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLP 138 (335)
Q Consensus 106 ~-~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~ 138 (335)
. +. .+.+++|+++++++.....-...+.+.+.
T Consensus 219 ~~~~-l~~mk~gailIN~sRG~~vd~~aL~~aL~ 251 (332)
T PRK08605 219 NADL-FKHFKKGAVFVNCARGSLVDTKALLDALD 251 (332)
T ss_pred CHHH-HhcCCCCcEEEECCCCcccCHHHHHHHHH
Confidence 2 22 24588999999998765444455544443
No 112
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=98.92 E-value=2.1e-08 Score=95.02 Aligned_cols=109 Identities=16% Similarity=0.162 Sum_probs=78.1
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHhh
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLKS 107 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~~ 107 (335)
...++|||||+|.||..+|+.|+..|++|++||++.+....... .....++++++ .+||+|++++|... +..++..
T Consensus 134 l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~--~~~~~~l~e~l-~~aDvvv~~lPlt~~T~~li~~ 210 (312)
T PRK15469 134 REDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQS--FAGREELSAFL-SQTRVLINLLPNTPETVGIINQ 210 (312)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCcee--ecccccHHHHH-hcCCEEEECCCCCHHHHHHhHH
Confidence 46789999999999999999999999999999987643210111 11234677887 89999999999764 5566543
Q ss_pred ccccccCCccEEEEcCCCCchHHHHHHhhCCCC
Q 044593 108 IPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQD 140 (335)
Q Consensus 108 l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~ 140 (335)
-....+++|+++++++-....-.+.+.+.+..+
T Consensus 211 ~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g 243 (312)
T PRK15469 211 QLLEQLPDGAYLLNLARGVHVVEDDLLAALDSG 243 (312)
T ss_pred HHHhcCCCCcEEEECCCccccCHHHHHHHHhcC
Confidence 112468899999999755444445555555443
No 113
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.90 E-value=3.9e-08 Score=93.33 Aligned_cols=145 Identities=17% Similarity=0.146 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCCc-------HHHH-----------HhCCC-------------ceecC--hhhHhhcC
Q 044593 42 FGQFLAKAFARHHHTLLVHSRSDHS-------PAVR-----------QQLNA-------------PFFAD--LNDLCELH 88 (335)
Q Consensus 42 mG~siA~~L~~~G~~V~~~dr~~~~-------~~~a-----------~~~g~-------------~~~~~--~~~~~~~~ 88 (335)
||..||..++.+|++|++||++++. .+.+ .+.|. ...++ ..+.+ ++
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~-~~ 79 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADAL-AD 79 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHh-cc
Confidence 7999999999999999999999853 1111 11221 22322 44556 89
Q ss_pred CCEEEEecCchh--HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCccee
Q 044593 89 PDVVLLSTSILS--TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMY 166 (335)
Q Consensus 89 aDvVIlavp~~~--~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~ 166 (335)
||+||.|+|.+. ...++.++. ..++++++|..++|. .....+.+.+...-++++.|+...|..- + ++
T Consensus 80 aD~ViEav~E~~~~K~~~f~~l~-~~~~~~~ilaSntS~--~~~~~la~~~~~p~r~~g~Hf~~Pp~~~-------~-lv 148 (314)
T PRK08269 80 ADLVFEAVPEVLDAKREALRWLG-RHVDADAIIASTTST--FLVTDLQRHVAHPERFLNAHWLNPAYLM-------P-LV 148 (314)
T ss_pred CCEEEECCcCCHHHHHHHHHHHH-hhCCCCcEEEEcccc--CCHHHHHhhcCCcccEEEEecCCccccC-------c-eE
Confidence 999999999885 356777874 578899999776665 4556677666555579999988776632 1 11
Q ss_pred cccccCCChhHHHHHHHHHHHHHhcCCEEEEeCh
Q 044593 167 DKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSC 200 (335)
Q Consensus 167 ~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~ 200 (335)
+ +++++.++++.++.+.++++.+|.+++++..
T Consensus 149 E--Vv~g~~t~~e~~~~~~~ll~~lGk~~v~v~d 180 (314)
T PRK08269 149 E--VSPSDATDPAVVDRLAALLERIGKVPVVCGP 180 (314)
T ss_pred E--EeCCCCCCHHHHHHHHHHHHHcCCcEEEecC
Confidence 1 1345566778899999999999999988853
No 114
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=98.87 E-value=3.8e-09 Score=93.40 Aligned_cols=162 Identities=17% Similarity=0.079 Sum_probs=113.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHh-----------CCC--------------ceecChhhH
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ-----------LNA--------------PFFADLNDL 84 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~-----------~g~--------------~~~~~~~~~ 84 (335)
+.-||+|+|.|.+|+++|..|+..||+|..||..++....|.+ .|. ..++++.++
T Consensus 2 s~~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~ 81 (313)
T KOG2305|consen 2 SFGKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNEL 81 (313)
T ss_pred CccceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHH
Confidence 4569999999999999999999999999999998765443321 222 246788888
Q ss_pred hhcCCCEEEEecCchh--HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCC
Q 044593 85 CELHPDVVLLSTSILS--TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENL 162 (335)
Q Consensus 85 ~~~~aDvVIlavp~~~--~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~ 162 (335)
. +++=.|--|+|.+- -..+++++. ..+.+.+++...+|+ .....+.+.+-+..+.+..||+..|-+-+ .
T Consensus 82 v-k~Ai~iQEcvpE~L~lkk~ly~qlD-~i~d~~tIlaSSTSt--~mpS~~s~gL~~k~q~lvaHPvNPPyfiP-----L 152 (313)
T KOG2305|consen 82 V-KGAIHIQECVPEDLNLKKQLYKQLD-EIADPTTILASSTST--FMPSKFSAGLINKEQCLVAHPVNPPYFIP-----L 152 (313)
T ss_pred H-hhhhhHHhhchHhhHHHHHHHHHHH-HhcCCceEEeccccc--cChHHHhhhhhhhhheeEecCCCCCcccc-----h
Confidence 8 77877788999875 356677774 445676666655444 44455555454445678889998776432 1
Q ss_pred cceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHH
Q 044593 163 PFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDK 205 (335)
Q Consensus 163 ~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~ 205 (335)
.-+ ++.+.+.++.+++..++.+++|-+++....+.-..
T Consensus 153 vEl-----VPaPwTsp~tVdrt~~lM~sigq~pV~l~rei~Gf 190 (313)
T KOG2305|consen 153 VEL-----VPAPWTSPDTVDRTRALMRSIGQEPVTLKREILGF 190 (313)
T ss_pred hee-----ccCCCCChhHHHHHHHHHHHhCCCCcccccccccc
Confidence 111 24455566788899999999999988887665443
No 115
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=98.86 E-value=9.4e-09 Score=104.02 Aligned_cols=110 Identities=18% Similarity=0.299 Sum_probs=83.2
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCch-hHHHHHh
Q 044593 28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSIL-STQSVLK 106 (335)
Q Consensus 28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~-~~~~vl~ 106 (335)
...+++|||||+|.||+.+|+.++..|++|++||+... .+.+.+.|+....++++++ .+||+|++++|.. .+..++.
T Consensus 135 ~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~-~~~~~~~g~~~~~~l~ell-~~aDvV~l~lPlt~~T~~li~ 212 (525)
T TIGR01327 135 ELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYIS-PERAEQLGVELVDDLDELL-ARADFITVHTPLTPETRGLIG 212 (525)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCC-hhHHHhcCCEEcCCHHHHH-hhCCEEEEccCCChhhccCcC
Confidence 45678999999999999999999999999999998643 2334566776556788988 8999999999976 3555552
Q ss_pred hccccccCCccEEEEcCCCCchHHHHHHhhCCC
Q 044593 107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQ 139 (335)
Q Consensus 107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~ 139 (335)
.=....+++++++++++.....-.+++.+.+..
T Consensus 213 ~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~ 245 (525)
T TIGR01327 213 AEELAKMKKGVIIVNCARGGIIDEAALYEALEE 245 (525)
T ss_pred HHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHc
Confidence 111245889999999987655555566555543
No 116
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=98.84 E-value=2.9e-08 Score=96.21 Aligned_cols=104 Identities=16% Similarity=0.201 Sum_probs=76.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-----HHH
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-----TQS 103 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-----~~~ 103 (335)
..+++|||||+|.||+.+|+.+...|++|.+||+...... +.....++++++ ++||+|++++|... +..
T Consensus 114 l~gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~~-----~~~~~~~l~ell-~~aDiV~lh~Plt~~g~~~T~~ 187 (381)
T PRK00257 114 LAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAE-----GDGDFVSLERIL-EECDVISLHTPLTKEGEHPTRH 187 (381)
T ss_pred cCcCEEEEECCCHHHHHHHHHHHHCCCEEEEECCcccccc-----cCccccCHHHHH-hhCCEEEEeCcCCCCccccccc
Confidence 4678999999999999999999999999999998643211 222345788888 79999999999753 445
Q ss_pred HHhhccccccCCccEEEEcCCCCchHHHHHHhhCC
Q 044593 104 VLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLP 138 (335)
Q Consensus 104 vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~ 138 (335)
++.+-....+++|+++++++-....-.+++.+.+.
T Consensus 188 li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~ 222 (381)
T PRK00257 188 LLDEAFLASLRPGAWLINASRGAVVDNQALREALL 222 (381)
T ss_pred cCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHH
Confidence 55322124588999999998665444455655553
No 117
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.84 E-value=1.5e-08 Score=102.57 Aligned_cols=108 Identities=15% Similarity=0.215 Sum_probs=83.1
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHh
Q 044593 28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLK 106 (335)
Q Consensus 28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~ 106 (335)
...+++|||||+|.||..+|+.++..|++|++||+.... +.+...|+... ++++++ ++||+|++++|... +..++.
T Consensus 137 ~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~-~l~ell-~~aDiV~l~lP~t~~t~~li~ 213 (526)
T PRK13581 137 ELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERAAQLGVELV-SLDELL-ARADFITLHTPLTPETRGLIG 213 (526)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEE-cHHHHH-hhCCEEEEccCCChHhhcCcC
Confidence 346889999999999999999999999999999987542 23455677655 788888 89999999999863 555553
Q ss_pred -hccccccCCccEEEEcCCCCchHHHHHHhhCCC
Q 044593 107 -SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQ 139 (335)
Q Consensus 107 -~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~ 139 (335)
+. ...+++++++++++.....-.+.+.+.+..
T Consensus 214 ~~~-l~~mk~ga~lIN~aRG~~vde~aL~~aL~~ 246 (526)
T PRK13581 214 AEE-LAKMKPGVRIINCARGGIIDEAALAEALKS 246 (526)
T ss_pred HHH-HhcCCCCeEEEECCCCceeCHHHHHHHHhc
Confidence 22 246889999999987655555666666644
No 118
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=98.84 E-value=2e-08 Score=95.35 Aligned_cols=109 Identities=18% Similarity=0.362 Sum_probs=81.7
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHh
Q 044593 28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLK 106 (335)
Q Consensus 28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~ 106 (335)
...++++||||+|.||..+|+.++..|++|..|||++. .+...+.+..+.. +++++ +++|+|++.+|... +..++.
T Consensus 143 ~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~~~~~~~~y~~-l~ell-~~sDii~l~~Plt~~T~hLin 219 (324)
T COG1052 143 DLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN-PEAEKELGARYVD-LDELL-AESDIISLHCPLTPETRHLIN 219 (324)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC-hHHHhhcCceecc-HHHHH-HhCCEEEEeCCCChHHhhhcC
Confidence 35689999999999999999999988899999999987 3333444455555 88888 89999999999775 555554
Q ss_pred hccccccCCccEEEEcCCCCchHHHHHHhhCCC
Q 044593 107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQ 139 (335)
Q Consensus 107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~ 139 (335)
.-....++++.++++++-....-.+++-+.+..
T Consensus 220 ~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~ 252 (324)
T COG1052 220 AEELAKMKPGAILVNTARGGLVDEQALIDALKS 252 (324)
T ss_pred HHHHHhCCCCeEEEECCCccccCHHHHHHHHHh
Confidence 322246889999999975544444555555543
No 119
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.83 E-value=6.1e-08 Score=95.19 Aligned_cols=107 Identities=16% Similarity=0.219 Sum_probs=79.8
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHh
Q 044593 28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLK 106 (335)
Q Consensus 28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~ 106 (335)
...+++|||||+|.||..+|+.++..|++|.+||+.+... ..++....++++++ ++||+|++++|... +..++.
T Consensus 148 ~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~----~~~~~~~~~l~ell-~~sDiVslh~Plt~~T~~li~ 222 (409)
T PRK11790 148 EVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP----LGNARQVGSLEELL-AQSDVVSLHVPETPSTKNMIG 222 (409)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccc----cCCceecCCHHHHH-hhCCEEEEcCCCChHHhhccC
Confidence 4578999999999999999999999999999999864321 12334445789998 89999999999754 556664
Q ss_pred hccccccCCccEEEEcCCCCchHHHHHHhhCCC
Q 044593 107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQ 139 (335)
Q Consensus 107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~ 139 (335)
.-....+++|+++++++-..-.-.+++.+.+..
T Consensus 223 ~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~ 255 (409)
T PRK11790 223 AEELALMKPGAILINASRGTVVDIDALADALKS 255 (409)
T ss_pred HHHHhcCCCCeEEEECCCCcccCHHHHHHHHHc
Confidence 322346899999999986544444555555543
No 120
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=98.79 E-value=3.3e-08 Score=83.38 Aligned_cols=113 Identities=19% Similarity=0.263 Sum_probs=81.2
Q ss_pred EEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCcee--------------cChhhHhhcCCCEEEEecCch
Q 044593 34 IAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFF--------------ADLNDLCELHPDVVLLSTSIL 99 (335)
Q Consensus 34 I~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~--------------~~~~~~~~~~aDvVIlavp~~ 99 (335)
|+|+|+|.||..+|..|.+.|++|.+++|++ ..+...+.|+... .+..+.. ..+|+||+||+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~D~viv~vKa~ 78 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADA-GPYDLVIVAVKAY 78 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHH-STESEEEE-SSGG
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhcc-CCCcEEEEEeccc
Confidence 7899999999999999999999999999998 6555555555321 1111223 6899999999999
Q ss_pred hHHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCC
Q 044593 100 STQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFG 151 (335)
Q Consensus 100 ~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG 151 (335)
+..++++.+. +.+.+++.|+-+-+.- ...+.+.+.++.. +++.+-..+|
T Consensus 79 ~~~~~l~~l~-~~~~~~t~iv~~qNG~-g~~~~l~~~~~~~-~v~~g~~~~g 127 (151)
T PF02558_consen 79 QLEQALQSLK-PYLDPNTTIVSLQNGM-GNEEVLAEYFPRP-RVLGGVTTIG 127 (151)
T ss_dssp GHHHHHHHHC-TGEETTEEEEEESSSS-SHHHHHHCHSTGS-GEEEEEEEEE
T ss_pred chHHHHHHHh-hccCCCcEEEEEeCCC-CcHHHHHHHcCCC-cEEEEEEeEe
Confidence 9999999995 7888886666554332 3447777777643 4444444444
No 121
>PLN02928 oxidoreductase family protein
Probab=98.78 E-value=2.6e-08 Score=95.78 Aligned_cols=110 Identities=19% Similarity=0.250 Sum_probs=78.3
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHH------------hCCCceecChhhHhhcCCCEEEEe
Q 044593 28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQ------------QLNAPFFADLNDLCELHPDVVLLS 95 (335)
Q Consensus 28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~------------~~g~~~~~~~~~~~~~~aDvVIla 95 (335)
...+++|||||+|.||..+|+.++..|++|++|||+........ ..+. ...++++++ .+||+|+++
T Consensus 156 ~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ell-~~aDiVvl~ 233 (347)
T PLN02928 156 TLFGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKG-GHEDIYEFA-GEADIVVLC 233 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccC-cccCHHHHH-hhCCEEEEC
Confidence 45689999999999999999999999999999999743211110 0011 345788888 899999999
Q ss_pred cCchh-HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCC
Q 044593 96 TSILS-TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQ 139 (335)
Q Consensus 96 vp~~~-~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~ 139 (335)
+|... +..++..-....+++|+++++++-..-.-.+++.+.+..
T Consensus 234 lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~ 278 (347)
T PLN02928 234 CTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALES 278 (347)
T ss_pred CCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHc
Confidence 99654 445553221246889999999986554444556555544
No 122
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=98.76 E-value=2.9e-08 Score=94.06 Aligned_cols=107 Identities=17% Similarity=0.215 Sum_probs=79.3
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHh
Q 044593 28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLK 106 (335)
Q Consensus 28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~ 106 (335)
...+++|||||+|.||..+|+.++..|++|.+||+..... ..++. ..++++++ ++||+|++++|... +..++.
T Consensus 142 ~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~----~~~~~-~~~l~ell-~~sDvv~lh~Plt~~T~~li~ 215 (311)
T PRK08410 142 EIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK----NEEYE-RVSLEELL-KTSDIISIHAPLNEKTKNLIA 215 (311)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc----ccCce-eecHHHHh-hcCCEEEEeCCCCchhhcccC
Confidence 4578999999999999999999999999999999964321 22332 34788888 89999999999764 555554
Q ss_pred hccccccCCccEEEEcCCCCchHHHHHHhhCCCC
Q 044593 107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQD 140 (335)
Q Consensus 107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~ 140 (335)
.-....+|+++++++++-....-.+++.+.+..+
T Consensus 216 ~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g 249 (311)
T PRK08410 216 YKELKLLKDGAILINVGRGGIVNEKDLAKALDEK 249 (311)
T ss_pred HHHHHhCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 3223468899999999765444445565555443
No 123
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=98.75 E-value=2.6e-08 Score=96.31 Aligned_cols=104 Identities=15% Similarity=0.235 Sum_probs=75.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-----HHH
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-----TQS 103 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-----~~~ 103 (335)
..+++|||||+|.||+.+|+.+...|++|.+||+..... ... ....++++++ .+||+|++++|... +..
T Consensus 114 L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~----~~~-~~~~~L~ell-~~sDiI~lh~PLt~~g~~~T~~ 187 (378)
T PRK15438 114 LHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADR----GDE-GDFRSLDELV-QEADILTFHTPLFKDGPYKTLH 187 (378)
T ss_pred cCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCccccc----ccc-cccCCHHHHH-hhCCEEEEeCCCCCCccccccc
Confidence 468899999999999999999999999999999753211 111 1245788888 79999999999654 444
Q ss_pred HHhhccccccCCccEEEEcCCCCchHHHHHHhhCC
Q 044593 104 VLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLP 138 (335)
Q Consensus 104 vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~ 138 (335)
++.+-....+++|+++++++-....-.+++.+.+.
T Consensus 188 li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~ 222 (378)
T PRK15438 188 LADEKLIRSLKPGAILINACRGAVVDNTALLTCLN 222 (378)
T ss_pred ccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHH
Confidence 44321124588999999997654444455555553
No 124
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=98.75 E-value=4.3e-08 Score=93.35 Aligned_cols=110 Identities=21% Similarity=0.380 Sum_probs=80.5
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHH-HcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHH
Q 044593 28 KSTSLKIAVIGFGNFGQFLAKAFA-RHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVL 105 (335)
Q Consensus 28 ~~~~~kI~IIG~G~mG~siA~~L~-~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl 105 (335)
...++++||||+|.||..+|+.++ ..|++|.+||+...... ....++.. .++++++ ++||+|++++|... +..++
T Consensus 142 ~L~gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~-~~~~~~~~-~~l~ell-~~sDvv~lh~plt~~T~~li 218 (323)
T PRK15409 142 DVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEA-EERFNARY-CDLDTLL-QESDFVCIILPLTDETHHLF 218 (323)
T ss_pred CCCCCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhh-HHhcCcEe-cCHHHHH-HhCCEEEEeCCCChHHhhcc
Confidence 457899999999999999999997 78899999998753221 23445543 4788888 89999999999764 55555
Q ss_pred hhccccccCCccEEEEcCCCCchHHHHHHhhCCCC
Q 044593 106 KSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQD 140 (335)
Q Consensus 106 ~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~ 140 (335)
..-....+++++++++++-....-.+++.+.+..+
T Consensus 219 ~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g 253 (323)
T PRK15409 219 GAEQFAKMKSSAIFINAGRGPVVDENALIAALQKG 253 (323)
T ss_pred CHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 43222468899999999765444445665555443
No 125
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=98.74 E-value=8.7e-09 Score=91.08 Aligned_cols=155 Identities=13% Similarity=0.126 Sum_probs=104.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhC-----------C-C-----------------ceecC
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQL-----------N-A-----------------PFFAD 80 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~-----------g-~-----------------~~~~~ 80 (335)
..+.|+|||.|.||+.||+-.+..|++|+++|++++.+..+.+- + . ...++
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tn 89 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTN 89 (298)
T ss_pred cccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCC
Confidence 45789999999999999999999999999999998766544321 1 0 12345
Q ss_pred hhhHhhcCCCEEEEecCch--hHHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccc
Q 044593 81 LNDLCELHPDVVLLSTSIL--STQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSS 158 (335)
Q Consensus 81 ~~~~~~~~aDvVIlavp~~--~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~ 158 (335)
..+++ .++|+||-++-.. .-..+++++. ...++.++++..+|. ..+..+...+....+|.|.|-+.....=
T Consensus 90 v~~~v-~dadliiEAivEn~diK~~lF~~l~-~~ak~~~il~tNTSS--l~lt~ia~~~~~~srf~GlHFfNPvPvM--- 162 (298)
T KOG2304|consen 90 VSDAV-SDADLIIEAIVENLDIKRKLFKDLD-KIAKSSTILATNTSS--LSLTDIASATQRPSRFAGLHFFNPVPVM--- 162 (298)
T ss_pred HHHhh-hhhHHHHHHHHHhHHHHHHHHHHHH-hhcccceEEeecccc--eeHHHHHhhccChhhhceeeccCCchhH---
Confidence 56666 7899998776443 3467788884 456788887765443 2234455455555689999954433321
Q ss_pred cCCCcceecccccCCChhHHHHHHHHHHHHHhcCCEEEEe
Q 044593 159 WENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEM 198 (335)
Q Consensus 159 ~~g~~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~ 198 (335)
+ +++ ++.++.++++.++.+.++-+.+|..++..
T Consensus 163 -K----LvE--Vir~~~TS~eTf~~l~~f~k~~gKttVac 195 (298)
T KOG2304|consen 163 -K----LVE--VIRTDDTSDETFNALVDFGKAVGKTTVAC 195 (298)
T ss_pred -H----Hhh--hhcCCCCCHHHHHHHHHHHHHhCCCceee
Confidence 1 111 12345566778888999999999766655
No 126
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=98.73 E-value=2.9e-07 Score=89.93 Aligned_cols=163 Identities=14% Similarity=0.111 Sum_probs=107.2
Q ss_pred cCCCCCeEEEEcccHHHHHHHHHHHHcCCeEE------EEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh
Q 044593 27 VKSTSLKIAVIGFGNFGQFLAKAFARHHHTLL------VHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS 100 (335)
Q Consensus 27 ~~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~------~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~ 100 (335)
...++++|+|||+|.+|.+.|..|+..|++|+ ++|.+.+..+.|.+.|+.. .+..+++ +.||+|++.+|...
T Consensus 32 ~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v-~~~~Ea~-~~ADvVviLlPDt~ 109 (487)
T PRK05225 32 SYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV-GTYEELI-PQADLVINLTPDKQ 109 (487)
T ss_pred HHhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCcc-CCHHHHH-HhCCEEEEcCChHH
Confidence 44578999999999999999999999999988 4444455666677778865 4677777 89999999999998
Q ss_pred HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccC-CCCCccccc---CCCcceecccccC-CCh
Q 044593 101 TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMF-GPESAKSSW---ENLPFMYDKVRIG-NDE 175 (335)
Q Consensus 101 ~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPma-G~~~~~~~~---~g~~~i~~~~~~~-~~~ 175 (335)
-..+.+++. +.+++|..+.=.-+-. + ..-.-..|.++.++-.-|=. |++.- +.| .|.|.++. +.. .|.
T Consensus 110 q~~v~~~i~-p~LK~Ga~L~fsHGFn--i-~~~~i~~~~dvdVimvAPKgpG~~vR-~~y~~G~Gvp~l~A--V~~~qD~ 182 (487)
T PRK05225 110 HSDVVRAVQ-PLMKQGAALGYSHGFN--I-VEVGEQIRKDITVVMVAPKCPGTEVR-EEYKRGFGVPTLIA--VHPENDP 182 (487)
T ss_pred HHHHHHHHH-hhCCCCCEEEecCCce--e-eeCceeCCCCCcEEEECCCCCCchHH-HHHhcCCCceEEEE--EeecCCC
Confidence 677777784 7899998776432221 1 11111235667766555533 22221 111 46676653 111 222
Q ss_pred hHHHHHHHHHHHHHhcCCE---EEEeC
Q 044593 176 ERIKRVDKFLDVFAKEGCR---MVEMS 199 (335)
Q Consensus 176 ~~~~~~~~v~~l~~~~G~~---v~~~~ 199 (335)
+..+.+....+...+|+. ++..+
T Consensus 183 -~g~a~~~ala~a~~iG~~ragv~~tt 208 (487)
T PRK05225 183 -KGEGMAIAKAWAAATGGHRAGVLESS 208 (487)
T ss_pred -CchHHHHHHHHHHHhCCCccceeecc
Confidence 223556667777888876 55554
No 127
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=98.72 E-value=8e-08 Score=90.47 Aligned_cols=94 Identities=19% Similarity=0.287 Sum_probs=73.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCcee--cChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFF--ADLNDLCELHPDVVLLSTSILSTQSVLKS 107 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~--~~~~~~~~~~aDvVIlavp~~~~~~vl~~ 107 (335)
...|++|||+|.+|..++..|+..|.+|+++||+++..+.+.+.|.... .++.+.+ .++|+||.|+|...+. ++
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l-~~aDiVI~t~p~~~i~---~~ 226 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEV-GKIDIIFNTIPALVLT---KE 226 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHh-CCCCEEEECCChhhhh---HH
Confidence 5789999999999999999999999999999999877776777787543 3455666 7899999999975432 12
Q ss_pred ccccccCCccEEEEcCCCCch
Q 044593 108 IPFQRLKRSTLFVDVLSVKEF 128 (335)
Q Consensus 108 l~~~~l~~~~iVvd~~SvK~~ 128 (335)
. ...++++.+|+|+++....
T Consensus 227 ~-l~~~~~g~vIIDla~~pgg 246 (296)
T PRK08306 227 V-LSKMPPEALIIDLASKPGG 246 (296)
T ss_pred H-HHcCCCCcEEEEEccCCCC
Confidence 2 1346789999999876544
No 128
>PRK06487 glycerate dehydrogenase; Provisional
Probab=98.67 E-value=6.8e-08 Score=91.78 Aligned_cols=104 Identities=13% Similarity=0.186 Sum_probs=77.5
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHh
Q 044593 28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLK 106 (335)
Q Consensus 28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~ 106 (335)
...+++|||||+|.||..+|+.++..|++|.+||+..... .. ...++++++ ++||+|++++|... +..++.
T Consensus 145 ~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~~------~~-~~~~l~ell-~~sDiv~l~lPlt~~T~~li~ 216 (317)
T PRK06487 145 ELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRPA------RP-DRLPLDELL-PQVDALTLHCPLTEHTRHLIG 216 (317)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCcc------cc-cccCHHHHH-HhCCEEEECCCCChHHhcCcC
Confidence 4578899999999999999999999999999999864321 11 124688888 89999999999754 555554
Q ss_pred hccccccCCccEEEEcCCCCchHHHHHHhhCCC
Q 044593 107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQ 139 (335)
Q Consensus 107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~ 139 (335)
.-....+|+++++++++-....-.+++.+.+..
T Consensus 217 ~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~ 249 (317)
T PRK06487 217 ARELALMKPGALLINTARGGLVDEQALADALRS 249 (317)
T ss_pred HHHHhcCCCCeEEEECCCccccCHHHHHHHHHc
Confidence 322346889999999986544444555555543
No 129
>PRK06932 glycerate dehydrogenase; Provisional
Probab=98.65 E-value=6.7e-08 Score=91.70 Aligned_cols=105 Identities=13% Similarity=0.195 Sum_probs=77.4
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHh
Q 044593 28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLK 106 (335)
Q Consensus 28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~ 106 (335)
...+++|||||+|.||..+|+.++..|++|.+||+..... ... ...++++++ .+||+|++++|... +..++.
T Consensus 144 ~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~-----~~~-~~~~l~ell-~~sDiv~l~~Plt~~T~~li~ 216 (314)
T PRK06932 144 DVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASV-----CRE-GYTPFEEVL-KQADIVTLHCPLTETTQNLIN 216 (314)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCcccc-----ccc-ccCCHHHHH-HhCCEEEEcCCCChHHhcccC
Confidence 4578999999999999999999999999999999864211 011 134788888 89999999999654 555554
Q ss_pred hccccccCCccEEEEcCCCCchHHHHHHhhCCC
Q 044593 107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQ 139 (335)
Q Consensus 107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~ 139 (335)
.-....+|+|+++++++-..-.-.+++.+.+..
T Consensus 217 ~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~ 249 (314)
T PRK06932 217 AETLALMKPTAFLINTGRGPLVDEQALLDALEN 249 (314)
T ss_pred HHHHHhCCCCeEEEECCCccccCHHHHHHHHHc
Confidence 322346889999999986554444566555543
No 130
>PLN02306 hydroxypyruvate reductase
Probab=98.65 E-value=4.2e-07 Score=88.49 Aligned_cols=111 Identities=13% Similarity=0.150 Sum_probs=78.0
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHH-HcCCeEEEEcCCCCcH-HH-HHhCC------------CceecChhhHhhcCCCEE
Q 044593 28 KSTSLKIAVIGFGNFGQFLAKAFA-RHHHTLLVHSRSDHSP-AV-RQQLN------------APFFADLNDLCELHPDVV 92 (335)
Q Consensus 28 ~~~~~kI~IIG~G~mG~siA~~L~-~~G~~V~~~dr~~~~~-~~-a~~~g------------~~~~~~~~~~~~~~aDvV 92 (335)
...+++|||||+|.||..+|+.+. ..|++|.+||+..... .. ....| +....++++++ .+||+|
T Consensus 162 ~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell-~~sDiV 240 (386)
T PLN02306 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVL-READVI 240 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHH-hhCCEE
Confidence 356899999999999999999985 7799999999886422 10 11111 12235788888 899999
Q ss_pred EEecCchh-HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCC
Q 044593 93 LLSTSILS-TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQ 139 (335)
Q Consensus 93 Ilavp~~~-~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~ 139 (335)
++++|... +..++..-....+++|+++++++-....-.+++.+.+..
T Consensus 241 ~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~s 288 (386)
T PLN02306 241 SLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKA 288 (386)
T ss_pred EEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHh
Confidence 99999653 555554322356899999999975544444555555543
No 131
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.65 E-value=1.2e-07 Score=88.00 Aligned_cols=120 Identities=15% Similarity=0.194 Sum_probs=78.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHHc--CCe-EEEEcCCCCcHH-HHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHh
Q 044593 31 SLKIAVIGFGNFGQFLAKAFARH--HHT-LLVHSRSDHSPA-VRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLK 106 (335)
Q Consensus 31 ~~kI~IIG~G~mG~siA~~L~~~--G~~-V~~~dr~~~~~~-~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~ 106 (335)
+|||+|||+|.||..++..+.+. +++ +.++|++++..+ .+...+...+++.++++ .++|+|++|+|+....++..
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell-~~~DvVvi~a~~~~~~~~~~ 79 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELV-EDVDLVVECASVNAVEEVVP 79 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHh-cCCCEEEEcCChHHHHHHHH
Confidence 37999999999999999999876 355 467899986544 34455666677888887 78999999999988877776
Q ss_pred hccccccCCccEEEEcCCCC-chHHHHHHhhCC-CCC-ceEeccccCCCC
Q 044593 107 SIPFQRLKRSTLFVDVLSVK-EFPRNLFLKYLP-QDF-DILCTHPMFGPE 153 (335)
Q Consensus 107 ~l~~~~l~~~~iVvd~~SvK-~~~~~~l~~~l~-~~~-~~v~~HPmaG~~ 153 (335)
.+. . ..++.++++++... ....+.+.+... .+. -+++.+++.|..
T Consensus 80 ~al-~-~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~v~sga~~g~d 127 (265)
T PRK13304 80 KSL-E-NGKDVIIMSVGALADKELFLKLYKLAKENNCKIYLPSGAIVGLD 127 (265)
T ss_pred HHH-H-cCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEEEEeCchHHhHH
Confidence 652 1 22333343332221 122333333222 222 366666666554
No 132
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.65 E-value=1.4e-07 Score=87.74 Aligned_cols=79 Identities=24% Similarity=0.398 Sum_probs=63.1
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHc--CCeEE-EEcCCCCcH-HHHHhCCC-ceecChhhHhhcCCCEEEEecCchhHHH
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARH--HHTLL-VHSRSDHSP-AVRQQLNA-PFFADLNDLCELHPDVVLLSTSILSTQS 103 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~--G~~V~-~~dr~~~~~-~~a~~~g~-~~~~~~~~~~~~~aDvVIlavp~~~~~~ 103 (335)
|+.+||||||+|.||..++..|.+. ++++. ++|++++.. +.+.+.|. ..+++.++++ .++|+|++|+|.....+
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell-~~~D~Vvi~tp~~~h~e 82 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLA-THADIVVEAAPASVLRA 82 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHh-cCCCEEEECCCcHHHHH
Confidence 5678999999999999999999873 67775 789988654 34555564 4567888887 78999999999998777
Q ss_pred HHhhc
Q 044593 104 VLKSI 108 (335)
Q Consensus 104 vl~~l 108 (335)
+....
T Consensus 83 ~~~~a 87 (271)
T PRK13302 83 IVEPV 87 (271)
T ss_pred HHHHH
Confidence 76654
No 133
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=98.63 E-value=1.8e-07 Score=88.45 Aligned_cols=110 Identities=18% Similarity=0.368 Sum_probs=83.6
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHhh
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLKS 107 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~~ 107 (335)
..+++|+|+|+|.||..+|+.|...|..+..+.|++...+.+.+.+.. ..+.++.+ .++|+|++|+|... +..++..
T Consensus 160 ~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~-~~d~~~~~-~~sD~ivv~~pLt~~T~~liNk 237 (336)
T KOG0069|consen 160 LEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAE-FVDIEELL-ANSDVIVVNCPLTKETRHLINK 237 (336)
T ss_pred ccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhccc-ccCHHHHH-hhCCEEEEecCCCHHHHHHhhH
Confidence 357899999999999999999999997777778877766656655554 45667777 89999999999875 5666653
Q ss_pred ccccccCCccEEEEcCCCCchHHHHHHhhCCCC
Q 044593 108 IPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQD 140 (335)
Q Consensus 108 l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~ 140 (335)
-....++++.+|++++-.+-.-.+.+.+.+..+
T Consensus 238 ~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG 270 (336)
T KOG0069|consen 238 KFIEKMKDGAVLVNTARGAIIDEEALVEALKSG 270 (336)
T ss_pred HHHHhcCCCeEEEeccccccccHHHHHHHHhcC
Confidence 223568999999999766545556666666543
No 134
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.53 E-value=4.1e-07 Score=85.38 Aligned_cols=169 Identities=14% Similarity=0.137 Sum_probs=112.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHH--Hh---CCCceecChhhHhh--cCCCEEEEecCchh-HH
Q 044593 31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVR--QQ---LNAPFFADLNDLCE--LHPDVVLLSTSILS-TQ 102 (335)
Q Consensus 31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a--~~---~g~~~~~~~~~~~~--~~aDvVIlavp~~~-~~ 102 (335)
.+.|+.||++.||..++.....+|+.|.+|+|.....+.. .+ ..+....++++++. +...+|++-++... +.
T Consensus 6 ~~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD 85 (487)
T KOG2653|consen 6 KADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVD 85 (487)
T ss_pred ccchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHH
Confidence 4689999999999999999999999999999998655322 22 23445677777752 57889998887765 66
Q ss_pred HHHhhccccccCCccEEEEcCCCC-chHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHH
Q 044593 103 SVLKSIPFQRLKRSTLFVDVLSVK-EFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRV 181 (335)
Q Consensus 103 ~vl~~l~~~~l~~~~iVvd~~SvK-~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~ 181 (335)
.+++++. +++.+|.+|+|-++.. ....+..++....+.-||++ -+.|.|.++ +--|-++. +++ .++.
T Consensus 86 ~~I~~L~-p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~-GVSGGEEGA---R~GPSlMp----Gg~---~~Aw 153 (487)
T KOG2653|consen 86 QFIEELV-PYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGS-GVSGGEEGA---RYGPSLMP----GGS---KEAW 153 (487)
T ss_pred HHHHHHH-hhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEec-CccCccccc---ccCCccCC----CCC---hHHH
Confidence 7888885 7899999999986543 23444455444567778886 466666442 22243431 232 4566
Q ss_pred HHHHHHHHhcCCE-------EEEeChHHHHHHHHHhh
Q 044593 182 DKFLDVFAKEGCR-------MVEMSCFDHDKYAAGSQ 211 (335)
Q Consensus 182 ~~v~~l~~~~G~~-------v~~~~~~eHD~~~A~~s 211 (335)
..++++|..+-++ +.++.+.--...+.+++
T Consensus 154 p~ik~ifq~iaakv~~~epCc~wvG~~GaGhfVKMVH 190 (487)
T KOG2653|consen 154 PHIKDIFQKIAAKVSDGEPCCDWVGEGGAGHFVKMVH 190 (487)
T ss_pred HHHHHHHHHHHHHhcCCCCCeeeecCCCCccchhhhc
Confidence 6777777655322 34555544344454443
No 135
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=98.48 E-value=7.7e-07 Score=75.82 Aligned_cols=93 Identities=13% Similarity=0.167 Sum_probs=67.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhH--HHHHh
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILST--QSVLK 106 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~--~~vl~ 106 (335)
..++++.|+|+|.+|..+|+.|+..|.+|+++|++|-..-.|...|+... +.++++ ..+|++|.+|....+ .+-+.
T Consensus 21 l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~-~~~~a~-~~adi~vtaTG~~~vi~~e~~~ 98 (162)
T PF00670_consen 21 LAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVM-TLEEAL-RDADIFVTATGNKDVITGEHFR 98 (162)
T ss_dssp -TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE--HHHHT-TT-SEEEE-SSSSSSB-HHHHH
T ss_pred eCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEec-CHHHHH-hhCCEEEECCCCccccCHHHHH
Confidence 35789999999999999999999999999999999965545777788764 577777 899999999987653 45554
Q ss_pred hccccccCCccEEEEcCCCCch
Q 044593 107 SIPFQRLKRSTLFVDVLSVKEF 128 (335)
Q Consensus 107 ~l~~~~l~~~~iVvd~~SvK~~ 128 (335)
+ ++++++|.++++....
T Consensus 99 ~-----mkdgail~n~Gh~d~E 115 (162)
T PF00670_consen 99 Q-----MKDGAILANAGHFDVE 115 (162)
T ss_dssp H-----S-TTEEEEESSSSTTS
T ss_pred H-----hcCCeEEeccCcCcee
Confidence 4 5689999999876543
No 136
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.45 E-value=1.3e-06 Score=77.52 Aligned_cols=91 Identities=15% Similarity=0.193 Sum_probs=65.2
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHH-HhCCCceecChhhHhhcCCCEEEEecCchh-HHHHH
Q 044593 28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVR-QQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVL 105 (335)
Q Consensus 28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a-~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl 105 (335)
..++++|+|+|+|.||..+|+.|.+.|++|+++|++++..+.. ...|....+. .++...+||+++-|..... ..+.+
T Consensus 25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~-~~l~~~~~Dv~vp~A~~~~I~~~~~ 103 (200)
T cd01075 25 SLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAP-EEIYSVDADVFAPCALGGVINDDTI 103 (200)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcc-hhhccccCCEEEecccccccCHHHH
Confidence 3467899999999999999999999999999999998765433 3336554433 4443247999997766553 35555
Q ss_pred hhccccccCCccEEEEcCCC
Q 044593 106 KSIPFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 106 ~~l~~~~l~~~~iVvd~~Sv 125 (335)
+++. ..+|++-++.
T Consensus 104 ~~l~------~~~v~~~AN~ 117 (200)
T cd01075 104 PQLK------AKAIAGAANN 117 (200)
T ss_pred HHcC------CCEEEECCcC
Confidence 5552 3477777654
No 137
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=98.40 E-value=1.9e-05 Score=73.63 Aligned_cols=162 Identities=12% Similarity=0.093 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce--------------ecChhhHhhcCCCEEEEecCchhHHHHHh
Q 044593 41 NFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF--------------FADLNDLCELHPDVVLLSTSILSTQSVLK 106 (335)
Q Consensus 41 ~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~--------------~~~~~~~~~~~aDvVIlavp~~~~~~vl~ 106 (335)
.||+.+|..|.++|++|++++|+ +..+..++.|+.. .+++++ . ..+|+||+|||..++.++++
T Consensus 1 aiG~~~a~~L~~~G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~-~~~D~iiv~vKs~~~~~~l~ 77 (293)
T TIGR00745 1 AVGSLYGAYLARAGHDVTLLARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-L-PPADLVIITVKAYQTEEAAA 77 (293)
T ss_pred CchHHHHHHHHhCCCcEEEEecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhh-c-CCCCEEEEeccchhHHHHHH
Confidence 37999999999999999999997 4444455555421 112333 3 57999999999999999999
Q ss_pred hccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCC-ccccc--CCC-cceecccccCCChhHHHHHH
Q 044593 107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPES-AKSSW--ENL-PFMYDKVRIGNDEERIKRVD 182 (335)
Q Consensus 107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~-~~~~~--~g~-~~i~~~~~~~~~~~~~~~~~ 182 (335)
.+. +.+.++++|+.+...-. ..+.+.+.++.. +++.+.+..|... ++... .+. .+. ++..+...+..+
T Consensus 78 ~l~-~~l~~~~~iv~~qNG~g-~~~~l~~~~~~~-~v~~g~~~~~~~~~~pg~v~~~~~~~~~-----iG~~~~~~~~~~ 149 (293)
T TIGR00745 78 LLL-PLIGKNTKVLFLQNGLG-HEERLRELLPAR-RILGGVVTHGAVREEPGVVHHAGLGATK-----IGDYVGENEAVE 149 (293)
T ss_pred HhH-hhcCCCCEEEEccCCCC-CHHHHHHHhCcc-CEEEEEEEEeeEEcCCcEEEEeccccEE-----EecCCCchHHHH
Confidence 995 67888888877643322 235566666543 3444433333322 11000 111 111 222111124567
Q ss_pred HHHHHHHhcCCEEEEeChHHHHHHHHHhhhh
Q 044593 183 KFLDVFAKEGCRMVEMSCFDHDKYAAGSQFV 213 (335)
Q Consensus 183 ~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~l 213 (335)
.+.++|+..|.++...+.-....+..++...
T Consensus 150 ~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~ 180 (293)
T TIGR00745 150 ALAELLNEAGIPAELHGDILAAIWKKLLVNA 180 (293)
T ss_pred HHHHHHHhCCCCCEecchHHHHHHHHHhhee
Confidence 7888999989887666655555555554333
No 138
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=98.38 E-value=1.2e-06 Score=86.76 Aligned_cols=92 Identities=14% Similarity=0.217 Sum_probs=71.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHh-h
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLK-S 107 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~-~ 107 (335)
..+++|+|||+|.||..+|..++..|++|+++++++.....+...|+.. .++++++ +.+|+||+|+... .++. +
T Consensus 252 LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~-~~leell-~~ADIVI~atGt~---~iI~~e 326 (476)
T PTZ00075 252 IAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQV-VTLEDVV-ETADIFVTATGNK---DIITLE 326 (476)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCcee-ccHHHHH-hcCCEEEECCCcc---cccCHH
Confidence 4688999999999999999999999999999999886654455567643 3567777 8999999997533 3332 2
Q ss_pred ccccccCCccEEEEcCCCC
Q 044593 108 IPFQRLKRSTLFVDVLSVK 126 (335)
Q Consensus 108 l~~~~l~~~~iVvd~~SvK 126 (335)
. ...++++.+|++++...
T Consensus 327 ~-~~~MKpGAiLINvGr~d 344 (476)
T PTZ00075 327 H-MRRMKNNAIVGNIGHFD 344 (476)
T ss_pred H-HhccCCCcEEEEcCCCc
Confidence 2 23578999999998764
No 139
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.37 E-value=1.5e-06 Score=82.48 Aligned_cols=94 Identities=22% Similarity=0.315 Sum_probs=69.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcC-CeEEEEcCCCCc-HHHHHhCCCcee--cChhhHhhcCCCEEEEecCchhHHHH
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHH-HTLLVHSRSDHS-PAVRQQLNAPFF--ADLNDLCELHPDVVLLSTSILSTQSV 104 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G-~~V~~~dr~~~~-~~~a~~~g~~~~--~~~~~~~~~~aDvVIlavp~~~~~~v 104 (335)
...++|+|||+|.||..++..|...| .+|++++|+++. .+.+.+.|.... .+..+.+ .++|+||.|||......+
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l-~~aDvVi~at~~~~~~~~ 254 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELL-NEADVVISATGAPHYAKI 254 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHH-hcCCEEEECCCCCchHHH
Confidence 35789999999999999999999866 589999999865 466777776432 2344555 789999999998876444
Q ss_pred HhhccccccCCccEEEEcC
Q 044593 105 LKSIPFQRLKRSTLFVDVL 123 (335)
Q Consensus 105 l~~l~~~~l~~~~iVvd~~ 123 (335)
+.........++.+|+|++
T Consensus 255 ~~~~~~~~~~~~~~viDla 273 (311)
T cd05213 255 VERAMKKRSGKPRLIVDLA 273 (311)
T ss_pred HHHHHhhCCCCCeEEEEeC
Confidence 4443111123567999987
No 140
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=98.35 E-value=1.7e-06 Score=69.79 Aligned_cols=77 Identities=21% Similarity=0.390 Sum_probs=62.6
Q ss_pred CeEEEEcccHHHHHHHHHHHHc--CCeE-EEEcCCCCcHH-HHHhCCCceecChhhHhh-cCCCEEEEecCchhHHHHHh
Q 044593 32 LKIAVIGFGNFGQFLAKAFARH--HHTL-LVHSRSDHSPA-VRQQLNAPFFADLNDLCE-LHPDVVLLSTSILSTQSVLK 106 (335)
Q Consensus 32 ~kI~IIG~G~mG~siA~~L~~~--G~~V-~~~dr~~~~~~-~a~~~g~~~~~~~~~~~~-~~aDvVIlavp~~~~~~vl~ 106 (335)
+||+|||+|.+|......+.+. +.++ .++|++++..+ .+++.|+..+++.++++. .+.|+|++|||...-.+++.
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~~ 80 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAEIAK 80 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHHHHH
Confidence 5899999999999999999887 3465 47899986554 467789988899998872 37999999999998777776
Q ss_pred hc
Q 044593 107 SI 108 (335)
Q Consensus 107 ~l 108 (335)
..
T Consensus 81 ~~ 82 (120)
T PF01408_consen 81 KA 82 (120)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 141
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=98.34 E-value=1.6e-06 Score=70.58 Aligned_cols=92 Identities=20% Similarity=0.288 Sum_probs=61.5
Q ss_pred eEEEEc-ccHHHHHHHHHHHHc-CCeEEEE-cCCCCcHHHHHhCC--Cc---e-ecChhhHhhcCCCEEEEecCchhHHH
Q 044593 33 KIAVIG-FGNFGQFLAKAFARH-HHTLLVH-SRSDHSPAVRQQLN--AP---F-FADLNDLCELHPDVVLLSTSILSTQS 103 (335)
Q Consensus 33 kI~IIG-~G~mG~siA~~L~~~-G~~V~~~-dr~~~~~~~a~~~g--~~---~-~~~~~~~~~~~aDvVIlavp~~~~~~ 103 (335)
||+||| .|.+|..++..+.+. ++++..+ +++.+..+.+...+ +. . ..+...+...++|+||+|+|.+...+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~ 80 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVSKE 80 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHHHH
Confidence 689999 599999999999984 7777655 65532222222211 11 0 11111111147999999999999888
Q ss_pred HHhhccccccCCccEEEEcCCC
Q 044593 104 VLKSIPFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 104 vl~~l~~~~l~~~~iVvd~~Sv 125 (335)
++..+. ..+++|++|+|++|+
T Consensus 81 ~~~~~~-~~~~~g~~viD~s~~ 101 (122)
T smart00859 81 IAPLLP-KAAEAGVKVIDLSSA 101 (122)
T ss_pred HHHHHH-hhhcCCCEEEECCcc
Confidence 776553 456899999999986
No 142
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.33 E-value=6.6e-07 Score=74.46 Aligned_cols=95 Identities=20% Similarity=0.279 Sum_probs=64.3
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCe-EEEEcCCCCcH-HHHHhCC---Cc--eecChhhHhhcCCCEEEEecCchh
Q 044593 28 KSTSLKIAVIGFGNFGQFLAKAFARHHHT-LLVHSRSDHSP-AVRQQLN---AP--FFADLNDLCELHPDVVLLSTSILS 100 (335)
Q Consensus 28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~-V~~~dr~~~~~-~~a~~~g---~~--~~~~~~~~~~~~aDvVIlavp~~~ 100 (335)
..+..++.|||+|.+|.+++.+|.+.|.+ |++++|+.+.. +.+...+ +. ...+..+.. .++|+||.|||...
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~-~~~DivI~aT~~~~ 87 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEAL-QEADIVINATPSGM 87 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHH-HTESEEEE-SSTTS
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHH-hhCCeEEEecCCCC
Confidence 45788999999999999999999999985 99999997654 4444442 21 234455555 78999999999875
Q ss_pred H---HHHHhhccccccCCccEEEEcCCCCch
Q 044593 101 T---QSVLKSIPFQRLKRSTLFVDVLSVKEF 128 (335)
Q Consensus 101 ~---~~vl~~l~~~~l~~~~iVvd~~SvK~~ 128 (335)
. .+.+.... . .-++|+|++ +...
T Consensus 88 ~~i~~~~~~~~~-~---~~~~v~Dla-~Pr~ 113 (135)
T PF01488_consen 88 PIITEEMLKKAS-K---KLRLVIDLA-VPRD 113 (135)
T ss_dssp TSSTHHHHTTTC-H---HCSEEEES--SS-S
T ss_pred cccCHHHHHHHH-h---hhhceeccc-cCCC
Confidence 3 23333221 0 014999996 5433
No 143
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.33 E-value=1.7e-06 Score=81.04 Aligned_cols=75 Identities=23% Similarity=0.317 Sum_probs=61.1
Q ss_pred CCCCeEEEEccc-HHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593 29 STSLKIAVIGFG-NFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS 107 (335)
Q Consensus 29 ~~~~kI~IIG~G-~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~ 107 (335)
..+++|+|||.| .||..+|..|.++|+.|++|++... ++.+++ ++||+||+|++... .+..
T Consensus 157 l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~--------------~l~e~~-~~ADIVIsavg~~~---~v~~ 218 (301)
T PRK14194 157 LTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST--------------DAKALC-RQADIVVAAVGRPR---LIDA 218 (301)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC--------------CHHHHH-hcCCEEEEecCChh---cccH
Confidence 457999999995 9999999999999999999987643 456666 78999999998764 2222
Q ss_pred ccccccCCccEEEEcCC
Q 044593 108 IPFQRLKRSTLFVDVLS 124 (335)
Q Consensus 108 l~~~~l~~~~iVvd~~S 124 (335)
..+++|++|+|++-
T Consensus 219 ---~~ik~GaiVIDvgi 232 (301)
T PRK14194 219 ---DWLKPGAVVIDVGI 232 (301)
T ss_pred ---hhccCCcEEEEecc
Confidence 23789999999974
No 144
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=98.31 E-value=4.6e-06 Score=78.91 Aligned_cols=89 Identities=20% Similarity=0.251 Sum_probs=61.0
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHH-HHHhC-----------CCceecChhhHhhcCCCEEEEecCc
Q 044593 32 LKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPA-VRQQL-----------NAPFFADLNDLCELHPDVVLLSTSI 98 (335)
Q Consensus 32 ~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~-~a~~~-----------g~~~~~~~~~~~~~~aDvVIlavp~ 98 (335)
|||+|||+|.||..+|..++..|+ +|+++|++++..+ .+.+. .+..+.+.++ + ++||+||+|++.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~-~~aDiVIitag~ 79 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-T-ANSDIVVITAGL 79 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-h-CCCCEEEEcCCC
Confidence 699999999999999999999887 8999999766432 12110 1123456666 4 799999999873
Q ss_pred h----------------hHHHHHhhccccccCCccEEEEcCC
Q 044593 99 L----------------STQSVLKSIPFQRLKRSTLFVDVLS 124 (335)
Q Consensus 99 ~----------------~~~~vl~~l~~~~l~~~~iVvd~~S 124 (335)
. .+.++.+++. +. .++.+|+.+++
T Consensus 80 p~~~~~sR~~l~~~N~~iv~~i~~~I~-~~-~p~~~iIv~tN 119 (305)
T TIGR01763 80 PRKPGMSREDLLSMNAGIVREVTGRIM-EH-SPNPIIVVVSN 119 (305)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHH-HH-CCCeEEEEecC
Confidence 1 1344555553 33 45666666654
No 145
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=98.29 E-value=5.2e-06 Score=81.55 Aligned_cols=93 Identities=11% Similarity=0.155 Sum_probs=72.3
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHh-h
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLK-S 107 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~-~ 107 (335)
..+++|+|+|+|.||..+|..++..|.+|+++|+++.....+...|... .+.++++ +.+|+||.|+.... ++. +
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v-~~l~eal-~~aDVVI~aTG~~~---vI~~~ 284 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRV-MTMEEAA-ELGDIFVTATGNKD---VITAE 284 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEe-cCHHHHH-hCCCEEEECCCCHH---HHHHH
Confidence 3678999999999999999999999999999999987665566667653 3567777 79999999986543 332 2
Q ss_pred ccccccCCccEEEEcCCCCc
Q 044593 108 IPFQRLKRSTLFVDVLSVKE 127 (335)
Q Consensus 108 l~~~~l~~~~iVvd~~SvK~ 127 (335)
. ...+++|+++++++....
T Consensus 285 ~-~~~mK~GailiNvG~~d~ 303 (425)
T PRK05476 285 H-MEAMKDGAILANIGHFDN 303 (425)
T ss_pred H-HhcCCCCCEEEEcCCCCC
Confidence 2 134789999999987653
No 146
>PRK06223 malate dehydrogenase; Reviewed
Probab=98.28 E-value=6.1e-06 Score=77.99 Aligned_cols=90 Identities=21% Similarity=0.246 Sum_probs=59.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHHH-HHh---C----CC--c--eecChhhHhhcCCCEEEEecC
Q 044593 31 SLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPAV-RQQ---L----NA--P--FFADLNDLCELHPDVVLLSTS 97 (335)
Q Consensus 31 ~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~~-a~~---~----g~--~--~~~~~~~~~~~~aDvVIlavp 97 (335)
++||+|||+|.||..+|..+...|+ +|+++|++++..+. +.+ . +. . .+++.++ + ++||+||+++.
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~~-~-~~aDiVii~~~ 79 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYED-I-AGSDVVVITAG 79 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHHH-H-CCCCEEEECCC
Confidence 4799999999999999999998876 99999998865421 111 1 11 1 2345544 4 79999999863
Q ss_pred --c--------------hhHHHHHhhccccccCCccEEEEcCC
Q 044593 98 --I--------------LSTQSVLKSIPFQRLKRSTLFVDVLS 124 (335)
Q Consensus 98 --~--------------~~~~~vl~~l~~~~l~~~~iVvd~~S 124 (335)
. ..+.++++++. +.. ++.+++.+++
T Consensus 80 ~p~~~~~~r~~~~~~n~~i~~~i~~~i~-~~~-~~~~viv~tN 120 (307)
T PRK06223 80 VPRKPGMSRDDLLGINAKIMKDVAEGIK-KYA-PDAIVIVVTN 120 (307)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHHHHHH-HHC-CCeEEEEecC
Confidence 2 22455666663 333 5555665543
No 147
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=98.28 E-value=8.5e-05 Score=67.85 Aligned_cols=128 Identities=13% Similarity=0.135 Sum_probs=93.7
Q ss_pred CCceecChhhHhhcCCCEEEEecCchh-HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCC-CCCceEeccccCC
Q 044593 74 NAPFFADLNDLCELHPDVVLLSTSILS-TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLP-QDFDILCTHPMFG 151 (335)
Q Consensus 74 g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~-~~~~~v~~HPmaG 151 (335)
|+..++|..+++ +++|++|+-+|... ...+++.+. +++++|++|+++|++.+.....+-+.++ +++.+.+.||-+-
T Consensus 128 GvkVtsDD~EAv-k~aei~I~ftPfG~~t~~Iikki~-~~ipEgAII~~tCTIpt~~ly~~le~l~R~DvgIsS~HPaaV 205 (342)
T PRK00961 128 GLKVTTDDREAV-ADADIVITWLPKGGMQPDIIEKFA-DDIKEGAIVTHACTIPTTKFAKIFKDLGRDDLNVTSYHPGAV 205 (342)
T ss_pred CceEecCcHHHh-cCCCEEEEecCCCCCchHHHHHHH-hhCCCCCEEeccccCCHHHHHHHHHHhCcccCCeeccCCCCC
Confidence 555666767777 89999999999987 588899885 7899999999999987766655544454 5678999999887
Q ss_pred CCCcccccCCCcceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHhhhhH
Q 044593 152 PESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVT 214 (335)
Q Consensus 152 ~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lp 214 (335)
|+.. |+.++- ..-.++++++++.++.++.|..++.+.++--.-+.-+.|.++
T Consensus 206 Pgt~-----Gq~~i~------egyAtEEqI~klveL~~sa~k~ay~~PA~lvspV~DMgS~VT 257 (342)
T PRK00961 206 PEMK-----GQVYIA------EGYADEEAVEKLYEIGKKARGNAFKMPANLIGPVCDMCSAVT 257 (342)
T ss_pred CCCC-----Cceecc------cccCCHHHHHHHHHHHHHhCCCeeecchhhcchhhhHHHHHH
Confidence 7752 443332 222456789999999999999999999753333333333333
No 148
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=98.27 E-value=5.7e-06 Score=80.84 Aligned_cols=92 Identities=12% Similarity=0.165 Sum_probs=71.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh-
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS- 107 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~- 107 (335)
..+++|+|+|+|.+|..+|..++..|.+|+++|+++.....+...|.... +.++++ ..+|+||.++.... ++..
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~-~leeal-~~aDVVItaTG~~~---vI~~~ 267 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAA-KIGDIFITATGNKD---VIRGE 267 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeC-CHHHHH-hcCCEEEECCCCHH---HHHHH
Confidence 46789999999999999999999999999999999876555666776443 456666 78999999987543 3322
Q ss_pred ccccccCCccEEEEcCCCC
Q 044593 108 IPFQRLKRSTLFVDVLSVK 126 (335)
Q Consensus 108 l~~~~l~~~~iVvd~~SvK 126 (335)
. ...+++|+++++++...
T Consensus 268 ~-~~~mK~GailiN~G~~~ 285 (406)
T TIGR00936 268 H-FENMKDGAIVANIGHFD 285 (406)
T ss_pred H-HhcCCCCcEEEEECCCC
Confidence 2 13578999999988654
No 149
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=98.27 E-value=9.1e-05 Score=67.77 Aligned_cols=116 Identities=11% Similarity=0.153 Sum_probs=90.0
Q ss_pred CCceecChhhHhhcCCCEEEEecCchh-HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCC-CCCceEeccccCC
Q 044593 74 NAPFFADLNDLCELHPDVVLLSTSILS-TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLP-QDFDILCTHPMFG 151 (335)
Q Consensus 74 g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~-~~~~~v~~HPmaG 151 (335)
|+..++|..+++ +++|++|+-+|... ...+++.+. +++++|++|+++|++.+.....+-+.++ +++.+.+.||-+-
T Consensus 126 GvkVtsDD~EAv-~~aei~I~ftPfG~~q~~Iikkii-~~lpEgAII~~tCTIpt~~ly~ilE~l~R~DvgVsS~HPaaV 203 (340)
T TIGR01723 126 GLKVTTDDREAV-EDADIIITWLPKGNKQPDIIKKFI-DDIPEGAIVTHACTIPTTKFAKIFEDLGREDLNVTSYHPGCV 203 (340)
T ss_pred CceEecCcHHHh-cCCCEEEEEcCCCCCchHHHHHHH-hhCCCCCEEeccccCChHHHHHHHHhhCcccCCeeccCCCCC
Confidence 555667777777 89999999999987 588898885 7899999999999997766655544454 5678999999887
Q ss_pred CCCcccccCCCcceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeChHH
Q 044593 152 PESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFD 202 (335)
Q Consensus 152 ~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~e 202 (335)
|+. .++.++.. .-.++++++++.++.++.|..++.+.++-
T Consensus 204 Pgt-----~~q~Yi~e------gyAtEEqI~klveL~~sa~k~ay~~PA~L 243 (340)
T TIGR01723 204 PEM-----KGQVYIAE------GYASEEAVNKLYELGKKARGKAFKMPANL 243 (340)
T ss_pred CCC-----CCceEeec------ccCCHHHHHHHHHHHHHhCCCeeecchhh
Confidence 774 24444432 22346789999999999999999998763
No 150
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.27 E-value=3.5e-06 Score=77.88 Aligned_cols=161 Identities=17% Similarity=0.225 Sum_probs=104.9
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC-cHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHh-
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH-SPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLK- 106 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~-~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~- 106 (335)
.+.+||+|||+|.-|.+-|..|+.+|.+|++--|... +.+.|.+.|..+. +.++++ +.+|+|++-+|+....++++
T Consensus 16 LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~-~v~ea~-k~ADvim~L~PDe~q~~vy~~ 93 (338)
T COG0059 16 LKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVY-TVEEAA-KRADVVMILLPDEQQKEVYEK 93 (338)
T ss_pred hcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEee-cHHHHh-hcCCEEEEeCchhhHHHHHHH
Confidence 4678999999999999999999999999876655544 4788999998865 456777 89999999999999999998
Q ss_pred hccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCccccc---CCCcceecccccCCChhHHHHHHH
Q 044593 107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSW---ENLPFMYDKVRIGNDEERIKRVDK 183 (335)
Q Consensus 107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~---~g~~~i~~~~~~~~~~~~~~~~~~ 183 (335)
++. |.+++|..+.=.-+.. .....+ ..|+++.++-.-|=...+.-.+.+ .|.|.++. +-.|. +-.+.+.
T Consensus 94 ~I~-p~Lk~G~aL~FaHGfN-ihf~~i--~ppkdvdV~MVAPKgPG~~VR~~y~~G~GvP~LiA---V~qD~-sG~a~~~ 165 (338)
T COG0059 94 EIA-PNLKEGAALGFAHGFN-IHFGLI--VPPKDVDVIMVAPKGPGHLVRREYKEGFGVPALIA---VHQDA-SGKALDI 165 (338)
T ss_pred Hhh-hhhcCCceEEeccccc-eeccee--cCCccCcEEEEcCCCCcHHHHHHHHccCCceeEEE---EEeCC-CchHHHH
Confidence 775 7899998654322211 111111 124556555444432211100111 46776663 11221 1235566
Q ss_pred HHHHHHhcC---CEEEEeC
Q 044593 184 FLDVFAKEG---CRMVEMS 199 (335)
Q Consensus 184 v~~l~~~~G---~~v~~~~ 199 (335)
...+.+.+| +-++..+
T Consensus 166 Ala~AkgiGg~RaGvieTT 184 (338)
T COG0059 166 ALAYAKGIGGTRAGVIETT 184 (338)
T ss_pred HHHHHHhcCCCccceEeee
Confidence 677788888 3366654
No 151
>PRK04148 hypothetical protein; Provisional
Probab=98.25 E-value=5e-06 Score=68.81 Aligned_cols=94 Identities=13% Similarity=0.185 Sum_probs=72.8
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce-----ecChhhHhhcCCCEEEEecCchhHH
Q 044593 28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF-----FADLNDLCELHPDVVLLSTSILSTQ 102 (335)
Q Consensus 28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~-----~~~~~~~~~~~aDvVIlavp~~~~~ 102 (335)
..+.+||.+||+| .|..+|..|.+.|++|+++|.++...+.+++.+... ++..-++- +++|+|.-+-|+..+.
T Consensus 14 ~~~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y-~~a~liysirpp~el~ 91 (134)
T PRK04148 14 KGKNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIY-KNAKLIYSIRPPRDLQ 91 (134)
T ss_pred cccCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHH-hcCCEEEEeCCCHHHH
Confidence 3356899999999 999999999999999999999999888788877743 22223444 7899999999988876
Q ss_pred HHHhhccccccCCccEEEEcCC
Q 044593 103 SVLKSIPFQRLKRSTLFVDVLS 124 (335)
Q Consensus 103 ~vl~~l~~~~l~~~~iVvd~~S 124 (335)
.-+-+++ ..++...+|...++
T Consensus 92 ~~~~~la-~~~~~~~~i~~l~~ 112 (134)
T PRK04148 92 PFILELA-KKINVPLIIKPLSG 112 (134)
T ss_pred HHHHHHH-HHcCCCEEEEcCCC
Confidence 6666664 44666667776665
No 152
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=98.22 E-value=6.4e-06 Score=80.70 Aligned_cols=90 Identities=11% Similarity=0.210 Sum_probs=71.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHh-hc
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLK-SI 108 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~-~l 108 (335)
.+.+|+|+|+|.||..++..++..|.+|+++|+++.....+...|+... +.++.+ ..+|+||.|+.... ++. ..
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~-~~~e~v-~~aDVVI~atG~~~---~i~~~~ 275 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVM-TMEEAV-KEGDIFVTTTGNKD---IITGEH 275 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEc-cHHHHH-cCCCEEEECCCCHH---HHHHHH
Confidence 5789999999999999999999999999999999988888888898543 345666 78999999987543 222 21
Q ss_pred cccccCCccEEEEcCCC
Q 044593 109 PFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 109 ~~~~l~~~~iVvd~~Sv 125 (335)
...+++|.++++++..
T Consensus 276 -l~~mk~GgilvnvG~~ 291 (413)
T cd00401 276 -FEQMKDGAIVCNIGHF 291 (413)
T ss_pred -HhcCCCCcEEEEeCCC
Confidence 1347789999998754
No 153
>PLN02494 adenosylhomocysteinase
Probab=98.22 E-value=7.7e-06 Score=80.85 Aligned_cols=90 Identities=12% Similarity=0.182 Sum_probs=71.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhH--HHHHh
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILST--QSVLK 106 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~--~~vl~ 106 (335)
..+++|+|+|+|.||..+|..++..|.+|+++++++.....+...|.... +.++++ ..+|+||.++....+ .+.+
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv-~leEal-~~ADVVI~tTGt~~vI~~e~L- 328 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVL-TLEDVV-SEADIFVTTTGNKDIIMVDHM- 328 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeec-cHHHHH-hhCCEEEECCCCccchHHHHH-
Confidence 35789999999999999999999999999999999876555667777543 566776 789999998775532 2333
Q ss_pred hccccccCCccEEEEcCCC
Q 044593 107 SIPFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 107 ~l~~~~l~~~~iVvd~~Sv 125 (335)
..+++++++++++..
T Consensus 329 ----~~MK~GAiLiNvGr~ 343 (477)
T PLN02494 329 ----RKMKNNAIVCNIGHF 343 (477)
T ss_pred ----hcCCCCCEEEEcCCC
Confidence 347799999999863
No 154
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=98.21 E-value=1.1e-05 Score=76.93 Aligned_cols=66 Identities=20% Similarity=0.256 Sum_probs=48.6
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHH-HHH----h---CCC----ceecChhhHhhcCCCEEEEe
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPA-VRQ----Q---LNA----PFFADLNDLCELHPDVVLLS 95 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~-~a~----~---~g~----~~~~~~~~~~~~~aDvVIla 95 (335)
.+.+||+|||+|.||..+|..+...|+ +|+++|++++..+ .+. . .+. ..+++.++ + ++||+||++
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~~-l-~~aDiVI~t 81 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYED-I-AGSDVVIVT 81 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHHH-h-CCCCEEEEC
Confidence 356799999999999999999999995 8999999987431 111 1 111 12356554 4 799999997
Q ss_pred c
Q 044593 96 T 96 (335)
Q Consensus 96 v 96 (335)
.
T Consensus 82 a 82 (321)
T PTZ00082 82 A 82 (321)
T ss_pred C
Confidence 6
No 155
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=98.20 E-value=3.5e-06 Score=78.28 Aligned_cols=97 Identities=13% Similarity=0.246 Sum_probs=64.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHH-HHHhC---CCceecChhhHhhcCCCEEEEecCchhHHHHH
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPA-VRQQL---NAPFFADLNDLCELHPDVVLLSTSILSTQSVL 105 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~-~a~~~---g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl 105 (335)
..++++|+|+|.+|.+++..|.+.|++|++++|+++..+ .+... +.....+..+....++|+||.|||......+-
T Consensus 116 ~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~~ 195 (270)
T TIGR00507 116 PNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNID 195 (270)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCCC
Confidence 467899999999999999999999999999999976432 23222 22122223322214799999999986322111
Q ss_pred h-hccccccCCccEEEEcCCCC
Q 044593 106 K-SIPFQRLKRSTLFVDVLSVK 126 (335)
Q Consensus 106 ~-~l~~~~l~~~~iVvd~~SvK 126 (335)
. .+....++++.+|+|+....
T Consensus 196 ~~~~~~~~l~~~~~v~D~~y~p 217 (270)
T TIGR00507 196 EPPVPAEKLKEGMVVYDMVYNP 217 (270)
T ss_pred CCCCCHHHcCCCCEEEEeccCC
Confidence 0 11113467889999997543
No 156
>PTZ00117 malate dehydrogenase; Provisional
Probab=98.19 E-value=1.3e-05 Score=76.39 Aligned_cols=114 Identities=15% Similarity=0.130 Sum_probs=69.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcC-CeEEEEcCCCCcHH-HHHh-------CCC----ceecChhhHhhcCCCEEEEec
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHH-HTLLVHSRSDHSPA-VRQQ-------LNA----PFFADLNDLCELHPDVVLLST 96 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G-~~V~~~dr~~~~~~-~a~~-------~g~----~~~~~~~~~~~~~aDvVIlav 96 (335)
+.+||+|||+|.||.+++..+...| .++.++|++++..+ .+.+ .+. ..+++.+ .+ ++||+||++.
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l-~~ADiVVita 81 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DI-KDSDVVVITA 81 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-Hh-CCCCEEEECC
Confidence 4679999999999999999999888 58999999986432 1111 111 1234555 44 7999999998
Q ss_pred --Cc--------------hhHHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCC-CCceEecc
Q 044593 97 --SI--------------LSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQ-DFDILCTH 147 (335)
Q Consensus 97 --p~--------------~~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~-~~~~v~~H 147 (335)
|. ..+.++.+.+. + ..|+.+++.+++.-......+.+..+. ..++++.+
T Consensus 82 g~~~~~g~~r~dll~~n~~i~~~i~~~i~-~-~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~g 147 (319)
T PTZ00117 82 GVQRKEEMTREDLLTINGKIMKSVAESVK-K-YCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMA 147 (319)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHH-H-HCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEec
Confidence 32 12445666663 2 346666666554322333334333221 13566554
No 157
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=98.18 E-value=4.3e-06 Score=80.92 Aligned_cols=88 Identities=25% Similarity=0.295 Sum_probs=66.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcC-CeEEEEcCCCCcHHHHHhCC---Cce----e---cChhhHhhcCCCEEEEecCch
Q 044593 31 SLKIAVIGFGNFGQFLAKAFARHH-HTLLVHSRSDHSPAVRQQLN---APF----F---ADLNDLCELHPDVVLLSTSIL 99 (335)
Q Consensus 31 ~~kI~IIG~G~mG~siA~~L~~~G-~~V~~~dr~~~~~~~a~~~g---~~~----~---~~~~~~~~~~aDvVIlavp~~ 99 (335)
+|||.|||+|.+|+.+|..|+++| .+|++.||+.+.++.+.+.. +.. . ..+.+++ ++.|+||.|.|..
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li-~~~d~VIn~~p~~ 79 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALI-KDFDLVINAAPPF 79 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHH-hcCCEEEEeCCch
Confidence 589999999999999999999999 89999999988876665543 321 1 2334555 7889999999999
Q ss_pred hHHHHHhhccccccCCccEEEEcC
Q 044593 100 STQSVLKSIPFQRLKRSTLFVDVL 123 (335)
Q Consensus 100 ~~~~vl~~l~~~~l~~~~iVvd~~ 123 (335)
....+++.. ++.|.-++|++
T Consensus 80 ~~~~i~ka~----i~~gv~yvDts 99 (389)
T COG1748 80 VDLTILKAC----IKTGVDYVDTS 99 (389)
T ss_pred hhHHHHHHH----HHhCCCEEEcc
Confidence 877777543 23445555554
No 158
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=98.17 E-value=9e-06 Score=66.24 Aligned_cols=87 Identities=22% Similarity=0.304 Sum_probs=60.3
Q ss_pred eEEEEc-ccHHHHHHHHHHHHcC-CeE-EEEcCCC-CcHHHHHhCC----C---ceec-ChhhHhhcCCCEEEEecCchh
Q 044593 33 KIAVIG-FGNFGQFLAKAFARHH-HTL-LVHSRSD-HSPAVRQQLN----A---PFFA-DLNDLCELHPDVVLLSTSILS 100 (335)
Q Consensus 33 kI~IIG-~G~mG~siA~~L~~~G-~~V-~~~dr~~-~~~~~a~~~g----~---~~~~-~~~~~~~~~aDvVIlavp~~~ 100 (335)
||+||| .|.+|+.+.+.|.+.- +++ .+++++. .........+ . .... +..++ .++|+||+|+|...
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~Dvvf~a~~~~~ 78 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEEL--SDVDVVFLALPHGA 78 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHH--TTESEEEE-SCHHH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHh--hcCCEEEecCchhH
Confidence 799999 8999999999999854 354 5566666 2222222221 2 1222 33333 78999999999998
Q ss_pred HHHHHhhccccccCCccEEEEcCCC
Q 044593 101 TQSVLKSIPFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 101 ~~~vl~~l~~~~l~~~~iVvd~~Sv 125 (335)
..++...+ ++.|..|+|.++.
T Consensus 79 ~~~~~~~~----~~~g~~ViD~s~~ 99 (121)
T PF01118_consen 79 SKELAPKL----LKAGIKVIDLSGD 99 (121)
T ss_dssp HHHHHHHH----HHTTSEEEESSST
T ss_pred HHHHHHHH----hhCCcEEEeCCHH
Confidence 88888776 4578899999875
No 159
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.15 E-value=9.6e-06 Score=76.05 Aligned_cols=75 Identities=21% Similarity=0.309 Sum_probs=61.3
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEc-CCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHh
Q 044593 29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHS-RSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLK 106 (335)
Q Consensus 29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~d-r~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~ 106 (335)
..+++|+||| .|.||..+|..|.++|+.|++|+ |++ ++.+++ +++|+||.|++... .++
T Consensus 156 ~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~---------------~l~e~~-~~ADIVIsavg~~~---~v~ 216 (296)
T PRK14188 156 LSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR---------------DLPAVC-RRADILVAAVGRPE---MVK 216 (296)
T ss_pred CCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC---------------CHHHHH-hcCCEEEEecCChh---hcc
Confidence 4689999999 99999999999999999999995 554 245566 78999999999765 333
Q ss_pred hccccccCCccEEEEcCCC
Q 044593 107 SIPFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 107 ~l~~~~l~~~~iVvd~~Sv 125 (335)
.. .+++|++|+|++..
T Consensus 217 ~~---~lk~GavVIDvGin 232 (296)
T PRK14188 217 GD---WIKPGATVIDVGIN 232 (296)
T ss_pred hh---eecCCCEEEEcCCc
Confidence 32 37899999999854
No 160
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=98.15 E-value=8.9e-06 Score=73.59 Aligned_cols=93 Identities=19% Similarity=0.266 Sum_probs=67.9
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHh--CCCce----ecChhhHh---hcCCCEEEEecCchhHH
Q 044593 32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ--LNAPF----FADLNDLC---ELHPDVVLLSTSILSTQ 102 (335)
Q Consensus 32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~--~g~~~----~~~~~~~~---~~~aDvVIlavp~~~~~ 102 (335)
|+|.|||+|.+|.++|+.|.+.|++|+++|++++..+.... .+... .++.+.+. ..++|++|.+|..+...
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~~N 80 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDEVN 80 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCHHH
Confidence 78999999999999999999999999999999987765333 44321 22332221 26899999999999888
Q ss_pred HHHhhccccccCCccEEEEcCC
Q 044593 103 SVLKSIPFQRLKRSTLFVDVLS 124 (335)
Q Consensus 103 ~vl~~l~~~~l~~~~iVvd~~S 124 (335)
.++..+....+....+|+-+.+
T Consensus 81 ~i~~~la~~~~gv~~viar~~~ 102 (225)
T COG0569 81 SVLALLALKEFGVPRVIARARN 102 (225)
T ss_pred HHHHHHHHHhcCCCcEEEEecC
Confidence 8877775333444556665543
No 161
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=98.14 E-value=2e-05 Score=72.70 Aligned_cols=100 Identities=20% Similarity=0.195 Sum_probs=68.1
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHHc-CCeEE-EEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593 31 SLKIAVIGF-GNFGQFLAKAFARH-HHTLL-VHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS 107 (335)
Q Consensus 31 ~~kI~IIG~-G~mG~siA~~L~~~-G~~V~-~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~ 107 (335)
+|||+|||+ |.||..++..+.+. +++++ ++|++++........++..+.++++++ .++|+||.++|+....+++..
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll-~~~DvVid~t~p~~~~~~~~~ 79 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVL-ADADVLIDFTTPEATLENLEF 79 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhc-cCCCEEEECCCHHHHHHHHHH
Confidence 479999998 99999999998864 67764 588887654323444666667888877 689999999998887777665
Q ss_pred ccccccCCcc-EEEEcCCCCchHHHHHHh
Q 044593 108 IPFQRLKRST-LFVDVLSVKEFPRNLFLK 135 (335)
Q Consensus 108 l~~~~l~~~~-iVvd~~SvK~~~~~~l~~ 135 (335)
.. +.|. +|+-+.+......+.+.+
T Consensus 80 al----~~G~~vvigttG~s~~~~~~l~~ 104 (257)
T PRK00048 80 AL----EHGKPLVIGTTGFTEEQLAELEE 104 (257)
T ss_pred HH----HcCCCEEEECCCCCHHHHHHHHH
Confidence 52 2333 443333333334444544
No 162
>PRK06141 ornithine cyclodeaminase; Validated
Probab=98.09 E-value=5.8e-06 Score=78.54 Aligned_cols=90 Identities=20% Similarity=0.261 Sum_probs=63.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHH-cC-CeEEEEcCCCCcHH-HHHh---CC--CceecChhhHhhcCCCEEEEecCchh
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFAR-HH-HTLLVHSRSDHSPA-VRQQ---LN--APFFADLNDLCELHPDVVLLSTSILS 100 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~-~G-~~V~~~dr~~~~~~-~a~~---~g--~~~~~~~~~~~~~~aDvVIlavp~~~ 100 (335)
....+|+|||+|.||..++.++.. .+ .+|++|+|+++..+ .+.+ .| +....+..+++ .++|+|+.|||..
T Consensus 123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av-~~aDIVi~aT~s~- 200 (314)
T PRK06141 123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAV-RQADIISCATLST- 200 (314)
T ss_pred CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHH-hcCCEEEEeeCCC-
Confidence 456799999999999999987765 44 68999999986543 3333 24 34556777777 7999999999865
Q ss_pred HHHHHhhccccccCCccEEEEcCC
Q 044593 101 TQSVLKSIPFQRLKRSTLFVDVLS 124 (335)
Q Consensus 101 ~~~vl~~l~~~~l~~~~iVvd~~S 124 (335)
..++.. ..+++|+.|.-+++
T Consensus 201 -~pvl~~---~~l~~g~~i~~ig~ 220 (314)
T PRK06141 201 -EPLVRG---EWLKPGTHLDLVGN 220 (314)
T ss_pred -CCEecH---HHcCCCCEEEeeCC
Confidence 223321 34678885554544
No 163
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=98.08 E-value=1.4e-05 Score=76.22 Aligned_cols=93 Identities=15% Similarity=0.113 Sum_probs=68.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHc--CCeEEEEcCCCCcHHH-H---HhCCC--ceecChhhHhhcCCCEEEEecCchh
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARH--HHTLLVHSRSDHSPAV-R---QQLNA--PFFADLNDLCELHPDVVLLSTSILS 100 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~--G~~V~~~dr~~~~~~~-a---~~~g~--~~~~~~~~~~~~~aDvVIlavp~~~ 100 (335)
....+++|||+|.+|.+.+.++... ..+|.+|||+++..+. + .+.|+ ....+.++++ +++|+|+.|||...
T Consensus 126 ~~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav-~~aDiVitaT~s~~ 204 (325)
T TIGR02371 126 KDSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAV-EGCDILVTTTPSRK 204 (325)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHh-ccCCEEEEecCCCC
Confidence 3457899999999999988887653 3589999999876532 2 23453 3467888888 89999999998753
Q ss_pred HHHHHhhccccccCCccEEEEcCCCCc
Q 044593 101 TQSVLKSIPFQRLKRSTLFVDVLSVKE 127 (335)
Q Consensus 101 ~~~vl~~l~~~~l~~~~iVvd~~SvK~ 127 (335)
.++. ...+++|+.|..+++-+.
T Consensus 205 --P~~~---~~~l~~g~~v~~vGs~~p 226 (325)
T TIGR02371 205 --PVVK---ADWVSEGTHINAIGADAP 226 (325)
T ss_pred --cEec---HHHcCCCCEEEecCCCCc
Confidence 2221 134689999999987543
No 164
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=98.08 E-value=5.9e-06 Score=77.38 Aligned_cols=118 Identities=16% Similarity=0.101 Sum_probs=73.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHH-HHHhCC-----Cce--ecChhhHhhcCCCEEEEecCch
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPA-VRQQLN-----APF--FADLNDLCELHPDVVLLSTSIL 99 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~-~a~~~g-----~~~--~~~~~~~~~~~aDvVIlavp~~ 99 (335)
...++|.|||+|.+|.+++..|...|. +|+++||+.+..+ .+...+ ... ..+..+.+ .++|+||.|||..
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~-~~aDiVInaTp~G 203 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAAL-AAADGLVHATPTG 203 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhh-CCCCEEEECCcCC
Confidence 356799999999999999999999997 8999999976543 333221 111 22333344 6899999999976
Q ss_pred hHHHHHhhccccccCCccEEEEcCC--CCchHHHHHHhhCCCCCceEeccccC
Q 044593 100 STQSVLKSIPFQRLKRSTLFVDVLS--VKEFPRNLFLKYLPQDFDILCTHPMF 150 (335)
Q Consensus 100 ~~~~vl~~l~~~~l~~~~iVvd~~S--vK~~~~~~l~~~l~~~~~~v~~HPma 150 (335)
.....-..+....++++.+|.|+.- ..+..++..++ .+.+.+.+..|.
T Consensus 204 m~~~~~~~~~~~~l~~~~~v~DivY~P~~T~ll~~A~~---~G~~~~~G~~ML 253 (284)
T PRK12549 204 MAKHPGLPLPAELLRPGLWVADIVYFPLETELLRAARA---LGCRTLDGGGMA 253 (284)
T ss_pred CCCCCCCCCCHHHcCCCcEEEEeeeCCCCCHHHHHHHH---CCCeEecCHHHH
Confidence 4211001121134677889999853 23344444433 344455444443
No 165
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=98.07 E-value=1.5e-05 Score=70.80 Aligned_cols=92 Identities=17% Similarity=0.305 Sum_probs=70.9
Q ss_pred CeEEEEcccHHHHHHHHHHHHc--CCe-EEEEcCCCCcHH-HHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593 32 LKIAVIGFGNFGQFLAKAFARH--HHT-LLVHSRSDHSPA-VRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS 107 (335)
Q Consensus 32 ~kI~IIG~G~mG~siA~~L~~~--G~~-V~~~dr~~~~~~-~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~ 107 (335)
|+|+|||+|.||..+...+... +++ +.+||++.+... .....+....++++++. .+.|+++-|....++.+...+
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~-~~~DlvVEaAS~~Av~e~~~~ 79 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELI-AEVDLVVEAASPEAVREYVPK 79 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHh-hccceeeeeCCHHHHHHHhHH
Confidence 6899999999999999888764 344 688999987764 33445555568889988 899999999999998887776
Q ss_pred ccccccCCccEEEEcCCCC
Q 044593 108 IPFQRLKRSTLFVDVLSVK 126 (335)
Q Consensus 108 l~~~~l~~~~iVvd~~SvK 126 (335)
+.. -..+.+|++++...
T Consensus 80 ~L~--~g~d~iV~SVGALa 96 (255)
T COG1712 80 ILK--AGIDVIVMSVGALA 96 (255)
T ss_pred HHh--cCCCEEEEechhcc
Confidence 632 23567888887554
No 166
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=98.04 E-value=6.5e-05 Score=70.61 Aligned_cols=160 Identities=13% Similarity=0.202 Sum_probs=96.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHc--CC-----eEEEEcCCCCcH----HH---HHhC--------CC------ceecC
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARH--HH-----TLLVHSRSDHSP----AV---RQQL--------NA------PFFAD 80 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~--G~-----~V~~~dr~~~~~----~~---a~~~--------g~------~~~~~ 80 (335)
+...||+|||.|++|+++|+.+.++ ++ +|..|-+.++.. .+ .... |+ ...+|
T Consensus 19 ~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~d 98 (372)
T KOG2711|consen 19 RDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPD 98 (372)
T ss_pred cCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecch
Confidence 3457999999999999999998774 12 455554333211 11 1110 22 24567
Q ss_pred hhhHhhcCCCEEEEecCchhHHHHHhhccccccCCccEEEEcC-----CCCc----hHHHHHHhhCCCCCceEeccccCC
Q 044593 81 LNDLCELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVL-----SVKE----FPRNLFLKYLPQDFDILCTHPMFG 151 (335)
Q Consensus 81 ~~~~~~~~aDvVIlavp~~~~~~vl~~l~~~~l~~~~iVvd~~-----SvK~----~~~~~l~~~l~~~~~~v~~HPmaG 151 (335)
+.+++ .++|++|..+|.+.+..++++|. .+++++...+++. +-++ -+.+.+.+.++-...+ +.|
T Consensus 99 l~ea~-~dADilvf~vPhQf~~~ic~~l~-g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lgI~~~v-----L~G 171 (372)
T KOG2711|consen 99 LVEAA-KDADILVFVVPHQFIPRICEQLK-GYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALGIPCSV-----LMG 171 (372)
T ss_pred HHHHh-ccCCEEEEeCChhhHHHHHHHHh-cccCCCCeEEEeecceeccCCCCceeehHHHHHHHhCCCcee-----ecC
Confidence 88887 89999999999999999999996 7899998887763 1011 1234444544433333 344
Q ss_pred CCCcccccCCCcceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeC
Q 044593 152 PESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMS 199 (335)
Q Consensus 152 ~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~ 199 (335)
+..+.+.... -|+..+++.... .+.-..+.++|..-.+++...+
T Consensus 172 aNiA~EVa~~---~f~e~tIg~~~~-~~~~~~l~~lf~~p~FrV~~~~ 215 (372)
T KOG2711|consen 172 ANIASEVANE---KFCETTIGYKDK-KEAGILLKKLFRTPYFRVVVVE 215 (372)
T ss_pred CchHHHHHhc---cccceeEeccch-hhcchHHHHHhCCCceEEEEec
Confidence 4443222222 122223333211 1122357889999999877765
No 167
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=98.02 E-value=3.5e-05 Score=62.46 Aligned_cols=103 Identities=11% Similarity=0.111 Sum_probs=70.2
Q ss_pred CeEEEEc----ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593 32 LKIAVIG----FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS 107 (335)
Q Consensus 32 ~kI~IIG----~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~ 107 (335)
++|+||| -+.+|..+...|.+.|++|+.+++...... |...+.++.+.- ...|++++++|...+.+++++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~-----G~~~y~sl~e~p-~~iDlavv~~~~~~~~~~v~~ 74 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEIL-----GIKCYPSLAEIP-EPIDLAVVCVPPDKVPEIVDE 74 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEET-----TEE-BSSGGGCS-ST-SEEEE-S-HHHHHHHHHH
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEEC-----cEEeeccccCCC-CCCCEEEEEcCHHHHHHHHHH
Confidence 4799999 699999999999999999999988765543 666777777643 689999999999999999999
Q ss_pred ccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEe
Q 044593 108 IPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILC 145 (335)
Q Consensus 108 l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~ 145 (335)
+. .+..+.+++-.++......+.+++ .+.++++
T Consensus 75 ~~--~~g~~~v~~~~g~~~~~~~~~a~~---~gi~vig 107 (116)
T PF13380_consen 75 AA--ALGVKAVWLQPGAESEELIEAARE---AGIRVIG 107 (116)
T ss_dssp HH--HHT-SEEEE-TTS--HHHHHHHHH---TT-EEEE
T ss_pred HH--HcCCCEEEEEcchHHHHHHHHHHH---cCCEEEe
Confidence 84 255667777766443333333333 3566664
No 168
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=98.01 E-value=1.6e-05 Score=78.58 Aligned_cols=94 Identities=22% Similarity=0.346 Sum_probs=66.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcH-HHHHhCCCce--ecChhhHhhcCCCEEEEecCchhH---
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSP-AVRQQLNAPF--FADLNDLCELHPDVVLLSTSILST--- 101 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~-~~a~~~g~~~--~~~~~~~~~~~aDvVIlavp~~~~--- 101 (335)
...++|+|||+|.||..++..|...|+ +|++++|+++.. ..+.+.|... ..+..+.+ .++|+||.||+....
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l-~~aDvVI~aT~s~~~~i~ 258 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEAL-AEADIVISSTGAPHPIIG 258 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHh-ccCCEEEECCCCCCcEEc
Confidence 456899999999999999999999997 899999998654 4566666432 23344555 789999999986642
Q ss_pred HHHHhhccccccCCccEEEEcC
Q 044593 102 QSVLKSIPFQRLKRSTLFVDVL 123 (335)
Q Consensus 102 ~~vl~~l~~~~l~~~~iVvd~~ 123 (335)
.+.++......-..+.+++|++
T Consensus 259 ~~~l~~~~~~~~~~~~vviDla 280 (423)
T PRK00045 259 KGMVERALKARRHRPLLLVDLA 280 (423)
T ss_pred HHHHHHHHhhccCCCeEEEEeC
Confidence 3344332101112457899986
No 169
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=98.01 E-value=3.4e-05 Score=72.41 Aligned_cols=94 Identities=21% Similarity=0.199 Sum_probs=71.3
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHc-CCeE-EEEcCCCCc--HHHHHhCCCce-ecChhhHhh----cCCCEEEEecCch
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARH-HHTL-LVHSRSDHS--PAVRQQLNAPF-FADLNDLCE----LHPDVVLLSTSIL 99 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~-G~~V-~~~dr~~~~--~~~a~~~g~~~-~~~~~~~~~----~~aDvVIlavp~~ 99 (335)
|+.+||+|||+|.||..+...+.+. +.++ .++|++++. .+.+++.|+.. +.+.++++. .+.|+|+.|||..
T Consensus 2 m~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~ 81 (302)
T PRK08300 2 MSKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAG 81 (302)
T ss_pred CCCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHH
Confidence 4568999999999999988777764 4576 467888764 35678889875 467777762 3689999999998
Q ss_pred hHHHHHhhccccccCCccEEEEcCCCC
Q 044593 100 STQSVLKSIPFQRLKRSTLFVDVLSVK 126 (335)
Q Consensus 100 ~~~~vl~~l~~~~l~~~~iVvd~~SvK 126 (335)
...+..... .+.|+.|+|.++..
T Consensus 82 ~H~e~a~~a----~eaGk~VID~sPA~ 104 (302)
T PRK08300 82 AHVRHAAKL----REAGIRAIDLTPAA 104 (302)
T ss_pred HHHHHHHHH----HHcCCeEEECCccc
Confidence 877776655 35788999987654
No 170
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=98.00 E-value=1.9e-05 Score=68.17 Aligned_cols=77 Identities=21% Similarity=0.311 Sum_probs=59.8
Q ss_pred CCCCCeEEEEcccHH-HHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHh
Q 044593 28 KSTSLKIAVIGFGNF-GQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLK 106 (335)
Q Consensus 28 ~~~~~kI~IIG~G~m-G~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~ 106 (335)
...+.+|.|||.|.| |..++..|.+.|.+|++++|+.+ ++.+.+ .++|+||.||+... ++.
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~--------------~l~~~l-~~aDiVIsat~~~~---ii~ 102 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTK--------------NLKEHT-KQADIVIVAVGKPG---LVK 102 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCch--------------hHHHHH-hhCCEEEEcCCCCc---eec
Confidence 356799999999997 77799999999999999998742 334455 78999999999764 222
Q ss_pred hccccccCCccEEEEcCCC
Q 044593 107 SIPFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 107 ~l~~~~l~~~~iVvd~~Sv 125 (335)
. ..++++.+|+|++.-
T Consensus 103 ~---~~~~~~~viIDla~p 118 (168)
T cd01080 103 G---DMVKPGAVVIDVGIN 118 (168)
T ss_pred H---HHccCCeEEEEccCC
Confidence 1 236678999999854
No 171
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.98 E-value=3.3e-05 Score=71.63 Aligned_cols=77 Identities=21% Similarity=0.301 Sum_probs=54.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHHc-CCeEE-EEcCCCCcHHHHHh--CCCceecChhhHhhcCCCEEEEecCchhHHHHHh
Q 044593 31 SLKIAVIGFGNFGQFLAKAFARH-HHTLL-VHSRSDHSPAVRQQ--LNAPFFADLNDLCELHPDVVLLSTSILSTQSVLK 106 (335)
Q Consensus 31 ~~kI~IIG~G~mG~siA~~L~~~-G~~V~-~~dr~~~~~~~a~~--~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~ 106 (335)
++||+|||+|.||..+++.+.+. +.++. +++++....+.... .++..+++.+++. .++|+|+.|+|.....+...
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~-~~~DvVve~t~~~~~~e~~~ 79 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALP-QRPDLVVECAGHAALKEHVV 79 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhc-cCCCEEEECCCHHHHHHHHH
Confidence 47999999999999999999875 45653 44554332221222 2556677787773 67999999999987766666
Q ss_pred hc
Q 044593 107 SI 108 (335)
Q Consensus 107 ~l 108 (335)
..
T Consensus 80 ~a 81 (265)
T PRK13303 80 PI 81 (265)
T ss_pred HH
Confidence 54
No 172
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.97 E-value=4.9e-05 Score=72.06 Aligned_cols=87 Identities=20% Similarity=0.257 Sum_probs=58.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHc-CCeEEE-EcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARH-HHTLLV-HSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS 107 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~-G~~V~~-~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~ 107 (335)
+.+||+|||+|+||..++.++.+. ++++++ +|+++... .....++....+..++. .++|+|++|+|...-.+....
T Consensus 2 ~kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~-~~~~~~v~~~~d~~e~l-~~iDVViIctPs~th~~~~~~ 79 (324)
T TIGR01921 2 SKIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAET-LDTETPVYAVADDEKHL-DDVDVLILCMGSATDIPEQAP 79 (324)
T ss_pred CCcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHH-HhhcCCccccCCHHHhc-cCCCEEEEcCCCccCHHHHHH
Confidence 458999999999999999999875 678764 69986221 12234444445555565 789999999997654333332
Q ss_pred ccccccCCccEEEEc
Q 044593 108 IPFQRLKRSTLFVDV 122 (335)
Q Consensus 108 l~~~~l~~~~iVvd~ 122 (335)
+ +..|.-|+|.
T Consensus 80 ~----L~aG~NVV~s 90 (324)
T TIGR01921 80 Y----FAQFANTVDS 90 (324)
T ss_pred H----HHcCCCEEEC
Confidence 2 3344455554
No 173
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.96 E-value=1.2e-05 Score=75.04 Aligned_cols=95 Identities=15% Similarity=0.230 Sum_probs=64.5
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcC-CeEEEEcCCCCcHH-HHHhCCC----ceecChhhHhhcCCCEEEEecCchhHH
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHH-HTLLVHSRSDHSPA-VRQQLNA----PFFADLNDLCELHPDVVLLSTSILSTQ 102 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G-~~V~~~dr~~~~~~-~a~~~g~----~~~~~~~~~~~~~aDvVIlavp~~~~~ 102 (335)
...+++.|+|+|.+|.+++.+|...| .+|++++|+.+..+ .+.+.+. ....+..+.+ .++|+||-|||.....
T Consensus 121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~-~~~DivInaTp~g~~~ 199 (278)
T PRK00258 121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEEL-ADFDLIINATSAGMSG 199 (278)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhcc-ccCCEEEECCcCCCCC
Confidence 35678999999999999999999999 69999999976543 3333221 1111223444 6899999999977532
Q ss_pred HH-HhhccccccCCccEEEEcCC
Q 044593 103 SV-LKSIPFQRLKRSTLFVDVLS 124 (335)
Q Consensus 103 ~v-l~~l~~~~l~~~~iVvd~~S 124 (335)
.. ...+....++++.+|+|+.-
T Consensus 200 ~~~~~~~~~~~l~~~~~v~DivY 222 (278)
T PRK00258 200 ELPLPPLPLSLLRPGTIVYDMIY 222 (278)
T ss_pred CCCCCCCCHHHcCCCCEEEEeec
Confidence 10 01111134678899999964
No 174
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=97.95 E-value=3.9e-05 Score=75.88 Aligned_cols=71 Identities=15% Similarity=0.095 Sum_probs=51.3
Q ss_pred CeEEEEcccHHHHHHHH--HH----HHcCCeEEEEcCCCCcHHHHHh--------CC----CceecChhhHhhcCCCEEE
Q 044593 32 LKIAVIGFGNFGQFLAK--AF----ARHHHTLLVHSRSDHSPAVRQQ--------LN----APFFADLNDLCELHPDVVL 93 (335)
Q Consensus 32 ~kI~IIG~G~mG~siA~--~L----~~~G~~V~~~dr~~~~~~~a~~--------~g----~~~~~~~~~~~~~~aDvVI 93 (335)
+||+|||.|.||.+++. .+ ...|++|++||++++..+.... .+ +..++|..+++ ++||+||
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal-~~AD~Vi 79 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREAL-DGADFVI 79 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHh-cCCCEEE
Confidence 58999999999998666 34 3457899999999875542211 12 23466777777 8999999
Q ss_pred EecCchhHHH
Q 044593 94 LSTSILSTQS 103 (335)
Q Consensus 94 lavp~~~~~~ 103 (335)
.++|......
T Consensus 80 ~ai~~~~~~~ 89 (423)
T cd05297 80 NTIQVGGHEY 89 (423)
T ss_pred EeeEecCccc
Confidence 9999755433
No 175
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=97.94 E-value=6.6e-05 Score=71.06 Aligned_cols=65 Identities=20% Similarity=0.405 Sum_probs=48.1
Q ss_pred CeEEEEcccHHHHHHHHHHHHcC--CeEEEEcCCCCcHH-HHHhC-------CC--ce-ecChhhHhhcCCCEEEEecCc
Q 044593 32 LKIAVIGFGNFGQFLAKAFARHH--HTLLVHSRSDHSPA-VRQQL-------NA--PF-FADLNDLCELHPDVVLLSTSI 98 (335)
Q Consensus 32 ~kI~IIG~G~mG~siA~~L~~~G--~~V~~~dr~~~~~~-~a~~~-------g~--~~-~~~~~~~~~~~aDvVIlavp~ 98 (335)
+||+|||+|.+|+++|..|...| ++|+++|++++..+ .+.++ +. .. ..+.++ + .+||+||+++..
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~-l-~~aDIVIitag~ 78 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSD-C-KDADIVVITAGA 78 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHH-h-CCCCEEEEccCC
Confidence 48999999999999999999999 58999999987543 22221 11 12 233344 4 799999999975
No 176
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.93 E-value=3.5e-05 Score=76.07 Aligned_cols=93 Identities=22% Similarity=0.370 Sum_probs=65.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcC-CeEEEEcCCCCcH-HHHHhCCCce--ecChhhHhhcCCCEEEEecCchhH---
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHH-HTLLVHSRSDHSP-AVRQQLNAPF--FADLNDLCELHPDVVLLSTSILST--- 101 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G-~~V~~~dr~~~~~-~~a~~~g~~~--~~~~~~~~~~~aDvVIlavp~~~~--- 101 (335)
....+|+|||+|.||..++..|...| .+|++++|+.+.. +.+...|... ..+..+.+ .++|+||.||+....
T Consensus 178 l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l-~~aDvVi~aT~s~~~ii~ 256 (417)
T TIGR01035 178 LKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYL-AEADIVISSTGAPHPIVS 256 (417)
T ss_pred ccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHH-hhCCEEEECCCCCCceEc
Confidence 45689999999999999999999999 6899999998653 4566655432 23445555 789999999976542
Q ss_pred HHHHhhccccccCCccEEEEcC
Q 044593 102 QSVLKSIPFQRLKRSTLFVDVL 123 (335)
Q Consensus 102 ~~vl~~l~~~~l~~~~iVvd~~ 123 (335)
.+.++... ..-+...+++|++
T Consensus 257 ~e~l~~~~-~~~~~~~~viDla 277 (417)
T TIGR01035 257 KEDVERAL-RERTRPLFIIDIA 277 (417)
T ss_pred HHHHHHHH-hcCCCCeEEEEeC
Confidence 33444331 1001235889986
No 177
>PLN00203 glutamyl-tRNA reductase
Probab=97.92 E-value=2.8e-05 Score=78.43 Aligned_cols=94 Identities=26% Similarity=0.417 Sum_probs=65.6
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHH-HHHhC-CCc----eecChhhHhhcCCCEEEEecCchh-
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPA-VRQQL-NAP----FFADLNDLCELHPDVVLLSTSILS- 100 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~-~a~~~-g~~----~~~~~~~~~~~~aDvVIlavp~~~- 100 (335)
....+|+|||+|.||..++..|...|+ +|++++|+.+..+ .+... +.. ...+..+.+ .++|+||.||+...
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al-~~aDVVIsAT~s~~p 342 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACA-AEADVVFTSTSSETP 342 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHH-hcCCEEEEccCCCCC
Confidence 347899999999999999999999997 7999999986643 34443 322 223455556 78999999987554
Q ss_pred --HHHHHhhcccc--ccCCccEEEEcC
Q 044593 101 --TQSVLKSIPFQ--RLKRSTLFVDVL 123 (335)
Q Consensus 101 --~~~vl~~l~~~--~l~~~~iVvd~~ 123 (335)
..+.++.+... .-....+++|++
T Consensus 343 vI~~e~l~~~~~~~~~~~~~~~~IDLA 369 (519)
T PLN00203 343 LFLKEHVEALPPASDTVGGKRLFVDIS 369 (519)
T ss_pred eeCHHHHHHhhhcccccCCCeEEEEeC
Confidence 45666665210 001225899986
No 178
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=97.91 E-value=4.3e-05 Score=72.07 Aligned_cols=62 Identities=27% Similarity=0.371 Sum_probs=44.7
Q ss_pred EEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHH-HHH---h----CCC----ceecChhhHhhcCCCEEEEecC
Q 044593 34 IAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPA-VRQ---Q----LNA----PFFADLNDLCELHPDVVLLSTS 97 (335)
Q Consensus 34 I~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~-~a~---~----~g~----~~~~~~~~~~~~~aDvVIlavp 97 (335)
|+|||+|.||..+|..+...|+ +|+++|++++..+ .+. . .+. ..+.+.++ + ++||+||++..
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~~-l-~dADiVIit~g 75 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYED-I-AGSDVVVITAG 75 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHHH-h-CCCCEEEEecC
Confidence 6899999999999999998876 9999999976432 111 1 011 12345554 4 79999999873
No 179
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.90 E-value=3e-05 Score=72.18 Aligned_cols=76 Identities=14% Similarity=0.202 Sum_probs=60.0
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593 29 STSLKIAVIGF-GNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS 107 (335)
Q Consensus 29 ~~~~kI~IIG~-G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~ 107 (335)
..+++|+|||. |.||..+|..|.++|+.|++|.... .++.+.+ ++||+||.|++.... ++.
T Consensus 156 l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t--------------~~l~~~~-~~ADIVI~avg~~~~---v~~ 217 (284)
T PRK14179 156 LEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRT--------------RNLAEVA-RKADILVVAIGRGHF---VTK 217 (284)
T ss_pred CCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCC--------------CCHHHHH-hhCCEEEEecCcccc---CCH
Confidence 35789999997 9999999999999999999993221 1456666 799999999997653 222
Q ss_pred ccccccCCccEEEEcCCC
Q 044593 108 IPFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 108 l~~~~l~~~~iVvd~~Sv 125 (335)
..+++|++|+|++..
T Consensus 218 ---~~ik~GavVIDvgin 232 (284)
T PRK14179 218 ---EFVKEGAVVIDVGMN 232 (284)
T ss_pred ---HHccCCcEEEEecce
Confidence 237899999999754
No 180
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=97.89 E-value=0.00012 Score=69.55 Aligned_cols=69 Identities=20% Similarity=0.381 Sum_probs=50.2
Q ss_pred cCCCCCeEEEEcccHHHHHHHHHHHHcCC--eEEEEcCCCCcHH-HHHhC--------CCcee-cChhhHhhcCCCEEEE
Q 044593 27 VKSTSLKIAVIGFGNFGQFLAKAFARHHH--TLLVHSRSDHSPA-VRQQL--------NAPFF-ADLNDLCELHPDVVLL 94 (335)
Q Consensus 27 ~~~~~~kI~IIG~G~mG~siA~~L~~~G~--~V~~~dr~~~~~~-~a~~~--------g~~~~-~~~~~~~~~~aDvVIl 94 (335)
++...+||+|||+|.+|+++|..|...|. ++.++|++++..+ .+.++ ..... .+.++ + ++||+||+
T Consensus 2 ~~~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~-~-~~adivIi 79 (315)
T PRK00066 2 MKKQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSD-C-KDADLVVI 79 (315)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHH-h-CCCCEEEE
Confidence 45667899999999999999999999887 8999999876532 22221 11222 33444 4 89999999
Q ss_pred ecC
Q 044593 95 STS 97 (335)
Q Consensus 95 avp 97 (335)
+.-
T Consensus 80 tag 82 (315)
T PRK00066 80 TAG 82 (315)
T ss_pred ecC
Confidence 764
No 181
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=97.88 E-value=9.1e-05 Score=69.24 Aligned_cols=90 Identities=21% Similarity=0.269 Sum_probs=66.9
Q ss_pred CeEEEEcccHHHHHHHHHHHH-cCCeE-EEEcCCCCc--HHHHHhCCCce-ecChhhHhh-cCCCEEEEecCchhHHHHH
Q 044593 32 LKIAVIGFGNFGQFLAKAFAR-HHHTL-LVHSRSDHS--PAVRQQLNAPF-FADLNDLCE-LHPDVVLLSTSILSTQSVL 105 (335)
Q Consensus 32 ~kI~IIG~G~mG~siA~~L~~-~G~~V-~~~dr~~~~--~~~a~~~g~~~-~~~~~~~~~-~~aDvVIlavp~~~~~~vl 105 (335)
+||+|||+|.||..++..+.+ .++++ .++|+++++ .+.+++.|+.. +.+.++++. .+.|+|++|||.....+..
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~e~a 81 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHARHA 81 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHHHHH
Confidence 689999999999988777765 35676 467888865 45677888864 446677652 3689999999999877766
Q ss_pred hhccccccCCccEEEEcCCC
Q 044593 106 KSIPFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 106 ~~l~~~~l~~~~iVvd~~Sv 125 (335)
... ++.|..|+|..+.
T Consensus 82 ~~a----l~aGk~VIdekPa 97 (285)
T TIGR03215 82 RLL----AELGKIVIDLTPA 97 (285)
T ss_pred HHH----HHcCCEEEECCcc
Confidence 554 3467788887544
No 182
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.86 E-value=6.1e-05 Score=71.22 Aligned_cols=92 Identities=20% Similarity=0.156 Sum_probs=67.9
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHH-cCC-eEEEEcCCCCcH-HHHHhC---CCce-ecChhhHhhcCCCEEEEecCchhH
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFAR-HHH-TLLVHSRSDHSP-AVRQQL---NAPF-FADLNDLCELHPDVVLLSTSILST 101 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~-~G~-~V~~~dr~~~~~-~~a~~~---g~~~-~~~~~~~~~~~aDvVIlavp~~~~ 101 (335)
....+++|||+|.+|...+.++.. .+. +|.+|+|+++.. +.+.+. ++.. ..+.++++ .++|+||.|||...
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av-~~aDiVitaT~s~~- 200 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIP-EAVDLVVTATTSRT- 200 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHh-hcCCEEEEccCCCC-
Confidence 456799999999999999999975 554 799999998654 333332 3332 35677777 89999999999775
Q ss_pred HHHHhhccccccCCccEEEEcCCCCc
Q 044593 102 QSVLKSIPFQRLKRSTLFVDVLSVKE 127 (335)
Q Consensus 102 ~~vl~~l~~~~l~~~~iVvd~~SvK~ 127 (335)
.++. ..+++|+.|.-+++-+.
T Consensus 201 -Pl~~----~~~~~g~hi~~iGs~~p 221 (304)
T PRK07340 201 -PVYP----EAARAGRLVVAVGAFTP 221 (304)
T ss_pred -ceeC----ccCCCCCEEEecCCCCC
Confidence 3332 23689999999987654
No 183
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=97.85 E-value=6.2e-05 Score=73.14 Aligned_cols=94 Identities=16% Similarity=0.194 Sum_probs=64.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHH-hCCCce---e---cChhhHhhcCCCEEEEecCch--h
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQ-QLNAPF---F---ADLNDLCELHPDVVLLSTSIL--S 100 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~-~~g~~~---~---~~~~~~~~~~aDvVIlavp~~--~ 100 (335)
...+|.|||+|.+|...+..++..|.+|+++|++++..+.+. ..+... . .++.+.+ .++|+||.|++.. .
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l-~~aDvVI~a~~~~g~~ 244 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAV-KRADLLIGAVLIPGAK 244 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHH-ccCCEEEEccccCCCC
Confidence 456899999999999999999999999999999987654443 334321 1 2234455 7899999998432 1
Q ss_pred HHHHH-hhccccccCCccEEEEcCCC
Q 044593 101 TQSVL-KSIPFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 101 ~~~vl-~~l~~~~l~~~~iVvd~~Sv 125 (335)
...++ ++.. ..++++.+|+|++.-
T Consensus 245 ~p~lit~~~l-~~mk~g~vIvDva~d 269 (370)
T TIGR00518 245 APKLVSNSLV-AQMKPGAVIVDVAID 269 (370)
T ss_pred CCcCcCHHHH-hcCCCCCEEEEEecC
Confidence 11111 1111 236788999998744
No 184
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=97.85 E-value=0.00011 Score=65.46 Aligned_cols=162 Identities=12% Similarity=0.044 Sum_probs=92.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceec---ChhhHhhcCCCEEEEecCchhHHHHHh
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFA---DLNDLCELHPDVVLLSTSILSTQSVLK 106 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~---~~~~~~~~~aDvVIlavp~~~~~~vl~ 106 (335)
..+.+++||.|..|........+.++.+.. .+..+.+.++.+--.... +..... +-.+++|+-+|...+.++..
T Consensus 9 ~~v~~~~vgtgrl~ra~~~ra~h~~~~cs~--i~srS~~~a~~LaE~~~a~p~d~~~~a-el~~~vfv~vpd~~~s~vaa 85 (289)
T COG5495 9 ARVVVGIVGTGRLGRAALLRADHVVVACSA--ISSRSRDRAQNLAETYVAPPLDVAKSA-ELLLLVFVDVPDALYSGVAA 85 (289)
T ss_pred eeeEEEEeecchHHHHHHHHhcchheeehh--hhhcCHHHHhhchhccCCCccchhhCh-hhhceEEecchHHHHHHHHH
Confidence 457899999999999843333333333322 222233333332111111 112222 44688999999886666655
Q ss_pred hccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccc---cCCCcceecccccCCChhHHHHHHH
Q 044593 107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSS---WENLPFMYDKVRIGNDEERIKRVDK 183 (335)
Q Consensus 107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~---~~g~~~i~~~~~~~~~~~~~~~~~~ 183 (335)
.. ...+|++|++|++..+. ..+...-..+.--.+.||.|.....++. .++..+.+. ..| ...+..
T Consensus 86 ~~---~~rpg~iv~HcSga~~~--~il~~~gr~g~~~asiHP~f~Fsgl~edl~rl~d~~~~i~----eaD---~~g~ai 153 (289)
T COG5495 86 TS---LNRPGTIVAHCSGANGS--GILAPLGRQGCIPASIHPAFSFSGLDEDLSRLKDTIFGIT----EAD---DVGYAI 153 (289)
T ss_pred hc---ccCCCeEEEEccCCCch--hhhhhhhhcCCcceeecccccccCCHHHHHhCcccEEEee----ccc---ccccHH
Confidence 44 25799999999876442 3333322234445688998866543221 234433331 122 234567
Q ss_pred HHHHHHhcCCEEEEeChHHHHHH
Q 044593 184 FLDVFAKEGCRMVEMSCFDHDKY 206 (335)
Q Consensus 184 v~~l~~~~G~~v~~~~~~eHD~~ 206 (335)
++++...+|++++.+.+++.-.+
T Consensus 154 ~q~la~emgg~~f~V~~~~r~lY 176 (289)
T COG5495 154 VQSLALEMGGEPFCVREEARILY 176 (289)
T ss_pred HHHHHHHhCCCceeechhHHHHH
Confidence 78999999999999988765443
No 185
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.85 E-value=4.1e-05 Score=72.51 Aligned_cols=65 Identities=22% Similarity=0.369 Sum_probs=48.6
Q ss_pred CeEEEEcccHHHHHHHHHHHHcC--CeEEEEcCCCCcHH-HHHhCC-C-------c-eecChhhHhhcCCCEEEEecCc
Q 044593 32 LKIAVIGFGNFGQFLAKAFARHH--HTLLVHSRSDHSPA-VRQQLN-A-------P-FFADLNDLCELHPDVVLLSTSI 98 (335)
Q Consensus 32 ~kI~IIG~G~mG~siA~~L~~~G--~~V~~~dr~~~~~~-~a~~~g-~-------~-~~~~~~~~~~~~aDvVIlavp~ 98 (335)
|||+|||+|.+|.++|..|...| .+|.++|++++..+ .+.++. . . .+.+.++ + ++||+||+|++.
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~-l-~~aDiViita~~ 77 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYAD-C-KGADVVVITAGA 77 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHH-h-CCCCEEEEccCC
Confidence 68999999999999999999999 58999999986543 222211 1 1 1234444 4 799999999985
No 186
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=97.82 E-value=6.6e-05 Score=70.46 Aligned_cols=92 Identities=16% Similarity=0.292 Sum_probs=72.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCch-hHHHHHhhc
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSIL-STQSVLKSI 108 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~-~~~~vl~~l 108 (335)
.++++||+|+|.||+-+|..++..|..|++||+=.. .+.+...|++.. +++++. ..||+|-+-+|.. .+..++.+-
T Consensus 145 ~GKTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~-~~~~~a~gvq~v-sl~Eil-~~ADFitlH~PLtP~T~~lin~~ 221 (406)
T KOG0068|consen 145 RGKTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITP-MALAEAFGVQLV-SLEEIL-PKADFITLHVPLTPSTEKLLNDE 221 (406)
T ss_pred eccEEEEeecccchHHHHHHHHhcCceEEeecCCCc-hHHHHhccceee-eHHHHH-hhcCEEEEccCCCcchhhccCHH
Confidence 478999999999999999999999999999986543 334777888764 467776 7899999999965 366666543
Q ss_pred cccccCCccEEEEcCC
Q 044593 109 PFQRLKRSTLFVDVLS 124 (335)
Q Consensus 109 ~~~~l~~~~iVvd~~S 124 (335)
....+|+|..|++++-
T Consensus 222 tfA~mKkGVriIN~aR 237 (406)
T KOG0068|consen 222 TFAKMKKGVRIINVAR 237 (406)
T ss_pred HHHHhhCCcEEEEecC
Confidence 2345899999999964
No 187
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.81 E-value=7.9e-05 Score=61.03 Aligned_cols=100 Identities=20% Similarity=0.248 Sum_probs=64.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHH-cCCeE-EEEcCCCCc-H--HHH-----HhCCCceecChhhHhhcCCCEEEEecCchh
Q 044593 32 LKIAVIGF-GNFGQFLAKAFAR-HHHTL-LVHSRSDHS-P--AVR-----QQLNAPFFADLNDLCELHPDVVLLSTSILS 100 (335)
Q Consensus 32 ~kI~IIG~-G~mG~siA~~L~~-~G~~V-~~~dr~~~~-~--~~a-----~~~g~~~~~~~~~~~~~~aDvVIlavp~~~ 100 (335)
|||+|+|+ |.||..++..+.+ .++++ .++|+++.. . +.. ...|+..+++++++. ..+|+||-.+-+..
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~-~~~DVvIDfT~p~~ 79 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELL-EEADVVIDFTNPDA 79 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHT-TH-SEEEEES-HHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhc-ccCCEEEEcCChHH
Confidence 68999999 9999999999998 67785 567888721 1 111 134566778888887 67999999997777
Q ss_pred HHHHHhhccccccCCcc-EEEEcCCCCchHHHHHHhh
Q 044593 101 TQSVLKSIPFQRLKRST-LFVDVLSVKEFPRNLFLKY 136 (335)
Q Consensus 101 ~~~vl~~l~~~~l~~~~-iVvd~~SvK~~~~~~l~~~ 136 (335)
+.+.++... +.+. +|+=+++-.....+.+++.
T Consensus 80 ~~~~~~~~~----~~g~~~ViGTTG~~~~~~~~l~~~ 112 (124)
T PF01113_consen 80 VYDNLEYAL----KHGVPLVIGTTGFSDEQIDELEEL 112 (124)
T ss_dssp HHHHHHHHH----HHT-EEEEE-SSSHHHHHHHHHHH
T ss_pred hHHHHHHHH----hCCCCEEEECCCCCHHHHHHHHHH
Confidence 777776653 2233 4444444433444555554
No 188
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.80 E-value=9.2e-05 Score=68.06 Aligned_cols=92 Identities=14% Similarity=0.192 Sum_probs=64.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcC---CeE-EEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHh
Q 044593 31 SLKIAVIGFGNFGQFLAKAFARHH---HTL-LVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLK 106 (335)
Q Consensus 31 ~~kI~IIG~G~mG~siA~~L~~~G---~~V-~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~ 106 (335)
.+||+|||+|.||..++..+.+.+ +++ .+++++++..+...+ .....+++++++...+|+||-|.+...+.+...
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~-~~~~~~~l~~ll~~~~DlVVE~A~~~av~e~~~ 80 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAG-RVALLDGLPGLLAWRPDLVVEAAGQQAIAEHAE 80 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhc-cCcccCCHHHHhhcCCCEEEECCCHHHHHHHHH
Confidence 479999999999999999987642 554 457777644432322 255677888863378999999999998888777
Q ss_pred hccccccCCccEEEEcCCC
Q 044593 107 SIPFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 107 ~l~~~~l~~~~iVvd~~Sv 125 (335)
.+.. -..+-++++++..
T Consensus 81 ~iL~--~g~dlvv~SvGAL 97 (267)
T PRK13301 81 GCLT--AGLDMIICSAGAL 97 (267)
T ss_pred HHHh--cCCCEEEEChhHh
Confidence 6621 1234456665543
No 189
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.80 E-value=7.2e-05 Score=71.42 Aligned_cols=92 Identities=17% Similarity=0.195 Sum_probs=67.3
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHH-cCC-eEEEEcCCCCcHH-HHH----hCCCc--eecChhhHhhcCCCEEEEecCch
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFAR-HHH-TLLVHSRSDHSPA-VRQ----QLNAP--FFADLNDLCELHPDVVLLSTSIL 99 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~-~G~-~V~~~dr~~~~~~-~a~----~~g~~--~~~~~~~~~~~~aDvVIlavp~~ 99 (335)
....+++|||+|.+|.+.+.++.. .+. +|.+|+|+++..+ .+. +.++. ...+.++++ .++|+||.|||..
T Consensus 125 ~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~aDiVi~aT~s~ 203 (325)
T PRK08618 125 EDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAI-EEADIIVTVTNAK 203 (325)
T ss_pred CCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHH-hcCCEEEEccCCC
Confidence 346789999999999999988764 454 7999999987543 222 23443 356777777 8999999999977
Q ss_pred hHHHHHhhccccccCCccEEEEcCCCCc
Q 044593 100 STQSVLKSIPFQRLKRSTLFVDVLSVKE 127 (335)
Q Consensus 100 ~~~~vl~~l~~~~l~~~~iVvd~~SvK~ 127 (335)
. .++. ..+++|+.|..+++-+.
T Consensus 204 ~--p~i~----~~l~~G~hV~~iGs~~p 225 (325)
T PRK08618 204 T--PVFS----EKLKKGVHINAVGSFMP 225 (325)
T ss_pred C--cchH----HhcCCCcEEEecCCCCc
Confidence 4 2333 13679999999987643
No 190
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=97.80 E-value=9.8e-05 Score=70.95 Aligned_cols=90 Identities=20% Similarity=0.159 Sum_probs=63.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHHc-CCeEEE-EcCCCCcHH-HHHhCC------------------CceecChhhHhhcCC
Q 044593 31 SLKIAVIGFGNFGQFLAKAFARH-HHTLLV-HSRSDHSPA-VRQQLN------------------APFFADLNDLCELHP 89 (335)
Q Consensus 31 ~~kI~IIG~G~mG~siA~~L~~~-G~~V~~-~dr~~~~~~-~a~~~g------------------~~~~~~~~~~~~~~a 89 (335)
++||+|+|+|.||..+++.+.+. ++++++ +|++++... .+...| +....+..++. .++
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~-~~v 79 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLL-EKA 79 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhh-ccC
Confidence 46999999999999999998864 567754 576654332 233222 22334556665 689
Q ss_pred CEEEEecCchhHHHHHhhccccccCCccEEEEcCCC
Q 044593 90 DVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 90 DvVIlavp~~~~~~vl~~l~~~~l~~~~iVvd~~Sv 125 (335)
|+||.|+|.....+..... ++.|+.+++.++.
T Consensus 80 DVVIdaT~~~~~~e~a~~~----~~aGk~VI~~~~~ 111 (341)
T PRK04207 80 DIVVDATPGGVGAKNKELY----EKAGVKAIFQGGE 111 (341)
T ss_pred CEEEECCCchhhHHHHHHH----HHCCCEEEEcCCC
Confidence 9999999998877777654 4467888888775
No 191
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.79 E-value=5.6e-05 Score=74.56 Aligned_cols=70 Identities=16% Similarity=0.229 Sum_probs=48.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCch
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSIL 99 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~ 99 (335)
|+.++|+|||+|.+|.++|+.|++.|++|+++|+++.........+-....+..... .++|++|.+.+..
T Consensus 1 ~~~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlvV~s~gi~ 70 (418)
T PRK00683 1 MGLQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFP-EQVDLVVRSPGIK 70 (418)
T ss_pred CCCCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHh-cCCCEEEECCCCC
Confidence 345789999999999999999999999999999887543211100001112223333 5799999987654
No 192
>PRK06046 alanine dehydrogenase; Validated
Probab=97.79 E-value=7.3e-05 Score=71.40 Aligned_cols=92 Identities=18% Similarity=0.228 Sum_probs=66.5
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHc-CC-eEEEEcCCCCcHHH-HHh----CCC--ceecChhhHhhcCCCEEEEecCch
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARH-HH-TLLVHSRSDHSPAV-RQQ----LNA--PFFADLNDLCELHPDVVLLSTSIL 99 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~-G~-~V~~~dr~~~~~~~-a~~----~g~--~~~~~~~~~~~~~aDvVIlavp~~ 99 (335)
....+|+|||+|.+|...+.++... +. +|.+|||+++..+. +.+ .+. ....+.++++ + +|+|+.|||..
T Consensus 127 ~~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l-~-aDiVv~aTps~ 204 (326)
T PRK06046 127 KDSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEAC-D-CDILVTTTPSR 204 (326)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHh-h-CCEEEEecCCC
Confidence 3457899999999999999999753 44 68899999865432 222 243 3456777776 5 99999999976
Q ss_pred hHHHHHhhccccccCCccEEEEcCCCCc
Q 044593 100 STQSVLKSIPFQRLKRSTLFVDVLSVKE 127 (335)
Q Consensus 100 ~~~~vl~~l~~~~l~~~~iVvd~~SvK~ 127 (335)
. .++. ...+++|+.|..+++-+.
T Consensus 205 ~--P~~~---~~~l~~g~hV~~iGs~~p 227 (326)
T PRK06046 205 K--PVVK---AEWIKEGTHINAIGADAP 227 (326)
T ss_pred C--cEec---HHHcCCCCEEEecCCCCC
Confidence 4 2222 134689999999987654
No 193
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.78 E-value=0.00017 Score=68.37 Aligned_cols=65 Identities=17% Similarity=0.198 Sum_probs=47.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCC--eEEEEcCCCCcHH-HHHhC-------C---CceecChhhHhhcCCCEEEEecC
Q 044593 31 SLKIAVIGFGNFGQFLAKAFARHHH--TLLVHSRSDHSPA-VRQQL-------N---APFFADLNDLCELHPDVVLLSTS 97 (335)
Q Consensus 31 ~~kI~IIG~G~mG~siA~~L~~~G~--~V~~~dr~~~~~~-~a~~~-------g---~~~~~~~~~~~~~~aDvVIlavp 97 (335)
.+||+|||+|.+|+++|..|...|. ++.++|++++..+ .+.++ . +..+.+.++ + ++||+||++.-
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~-~~adivvitaG 80 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-T-ANSKVVIVTAG 80 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-h-CCCCEEEECCC
Confidence 4699999999999999999998885 7999999876432 12221 1 112345665 4 79999999653
No 194
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.78 E-value=9.9e-05 Score=70.49 Aligned_cols=90 Identities=16% Similarity=0.154 Sum_probs=65.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHH-cCC-eEEEEcCCCCcHH-HHHh----CCCc--eecChhhHhhcCCCEEEEecCchh
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFAR-HHH-TLLVHSRSDHSPA-VRQQ----LNAP--FFADLNDLCELHPDVVLLSTSILS 100 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~-~G~-~V~~~dr~~~~~~-~a~~----~g~~--~~~~~~~~~~~~aDvVIlavp~~~ 100 (335)
...+++|||+|.+|...+.+|.. .+. +|++|+|+++..+ .+.+ .|+. ...+..+.+ .++|+||.|||...
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av-~~aDiVvtaT~s~~ 206 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAM-SGADIIVTTTPSET 206 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHh-ccCCEEEEecCCCC
Confidence 45689999999999999999974 564 7999999986543 3332 2543 356677777 89999999999754
Q ss_pred HHHHHhhccccccCCccEEEEcCCC
Q 044593 101 TQSVLKSIPFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 101 ~~~vl~~l~~~~l~~~~iVvd~~Sv 125 (335)
.++. ...+++|+.|..+++-
T Consensus 207 --p~i~---~~~l~~g~~i~~vg~~ 226 (326)
T TIGR02992 207 --PILH---AEWLEPGQHVTAMGSD 226 (326)
T ss_pred --cEec---HHHcCCCcEEEeeCCC
Confidence 2222 1346788888888754
No 195
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=97.77 E-value=9.7e-05 Score=71.06 Aligned_cols=90 Identities=17% Similarity=0.242 Sum_probs=60.8
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHHc-CCeEEE-EcCCCCcHHHHHhCC-Cc-----eecChhh-HhhcCCCEEEEecCchh
Q 044593 31 SLKIAVIGF-GNFGQFLAKAFARH-HHTLLV-HSRSDHSPAVRQQLN-AP-----FFADLND-LCELHPDVVLLSTSILS 100 (335)
Q Consensus 31 ~~kI~IIG~-G~mG~siA~~L~~~-G~~V~~-~dr~~~~~~~a~~~g-~~-----~~~~~~~-~~~~~aDvVIlavp~~~ 100 (335)
++||+|||+ |.+|..+++.|.+. +++++. +++...........+ +. .+.+.++ .. .++|+|++|+|...
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~-~~vD~Vf~alP~~~ 80 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEIL-AGADVVFLALPHGV 80 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHh-cCCCEEEECCCcHH
Confidence 479999996 99999999999876 567644 554332222121111 11 1222222 33 67999999999998
Q ss_pred HHHHHhhccccccCCccEEEEcCCC
Q 044593 101 TQSVLKSIPFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 101 ~~~vl~~l~~~~l~~~~iVvd~~Sv 125 (335)
..++...+. +.|..|+|.++-
T Consensus 81 ~~~~v~~a~----~aG~~VID~S~~ 101 (343)
T PRK00436 81 SMDLAPQLL----EAGVKVIDLSAD 101 (343)
T ss_pred HHHHHHHHH----hCCCEEEECCcc
Confidence 888887763 368899999875
No 196
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=97.75 E-value=6.6e-05 Score=74.50 Aligned_cols=90 Identities=19% Similarity=0.222 Sum_probs=62.6
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHh-CCCcee----cCh---hhH-hhcCCCEEEEecCchhHH
Q 044593 32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ-LNAPFF----ADL---NDL-CELHPDVVLLSTSILSTQ 102 (335)
Q Consensus 32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~-~g~~~~----~~~---~~~-~~~~aDvVIlavp~~~~~ 102 (335)
|+|.|+|+|.+|..++..|.+.|++|+++|++++..+.+.+ .|+... .+. .++ + .++|.||++++.+...
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~-~~a~~vi~~~~~~~~n 79 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGA-EDADLLIAVTDSDETN 79 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCC-CcCCEEEEecCChHHH
Confidence 68999999999999999999999999999999887765554 454321 122 222 3 6899999999987765
Q ss_pred HHHhhccccccCCccEEEEc
Q 044593 103 SVLKSIPFQRLKRSTLFVDV 122 (335)
Q Consensus 103 ~vl~~l~~~~l~~~~iVvd~ 122 (335)
..+........+...+|+.+
T Consensus 80 ~~~~~~~r~~~~~~~ii~~~ 99 (453)
T PRK09496 80 MVACQIAKSLFGAPTTIARV 99 (453)
T ss_pred HHHHHHHHHhcCCCeEEEEE
Confidence 54433321222344555554
No 197
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.75 E-value=7.7e-05 Score=65.65 Aligned_cols=93 Identities=20% Similarity=0.134 Sum_probs=62.6
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHHcCCeEEEEcCCCCcHHH-HHhC----CCce----ecCh---hhHhhcCCCEEEEe
Q 044593 29 STSLKIAVIGF-GNFGQFLAKAFARHHHTLLVHSRSDHSPAV-RQQL----NAPF----FADL---NDLCELHPDVVLLS 95 (335)
Q Consensus 29 ~~~~kI~IIG~-G~mG~siA~~L~~~G~~V~~~dr~~~~~~~-a~~~----g~~~----~~~~---~~~~~~~aDvVIla 95 (335)
.+.+++.|+|. |.+|..++..|.+.|++|++++|+.+..+. +... +... ..+. .+.+ .++|+||.|
T Consensus 26 l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~diVi~a 104 (194)
T cd01078 26 LKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAI-KGADVVFAA 104 (194)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHH-hcCCEEEEC
Confidence 35689999995 999999999999999999999998754332 2211 2211 1222 2445 789999999
Q ss_pred cCchhHHHHHhhccccccCCccEEEEcCCC
Q 044593 96 TSILSTQSVLKSIPFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 96 vp~~~~~~vl~~l~~~~l~~~~iVvd~~Sv 125 (335)
+|..... .... ....+++.+++|+.-.
T Consensus 105 t~~g~~~--~~~~-~~~~~~~~vv~D~~~~ 131 (194)
T cd01078 105 GAAGVEL--LEKL-AWAPKPLAVAADVNAV 131 (194)
T ss_pred CCCCcee--chhh-hcccCceeEEEEccCC
Confidence 9977641 1111 1224457899998644
No 198
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=97.75 E-value=9.7e-05 Score=70.31 Aligned_cols=78 Identities=18% Similarity=0.250 Sum_probs=59.1
Q ss_pred CCCCeEEEEcccHHH-HHHHHHHHHcC--Ce-EEEEcCCCCcH-HHHHhCCCc-eecChhhHhh-cCCCEEEEecCchhH
Q 044593 29 STSLKIAVIGFGNFG-QFLAKAFARHH--HT-LLVHSRSDHSP-AVRQQLNAP-FFADLNDLCE-LHPDVVLLSTSILST 101 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG-~siA~~L~~~G--~~-V~~~dr~~~~~-~~a~~~g~~-~~~~~~~~~~-~~aDvVIlavp~~~~ 101 (335)
++++||||||+|.++ ...+..+.+.+ .+ |.++|++++.. +.+.+.|+. .+++.++++. .+.|+|++|+|+..-
T Consensus 1 ~~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H 80 (342)
T COG0673 1 MKMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALH 80 (342)
T ss_pred CCeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhh
Confidence 467899999999666 45888888866 24 56779998764 567778885 7788888873 237999999999886
Q ss_pred HHHHh
Q 044593 102 QSVLK 106 (335)
Q Consensus 102 ~~vl~ 106 (335)
.++..
T Consensus 81 ~e~~~ 85 (342)
T COG0673 81 AELAL 85 (342)
T ss_pred HHHHH
Confidence 65553
No 199
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=97.74 E-value=0.00021 Score=66.10 Aligned_cols=88 Identities=22% Similarity=0.255 Sum_probs=58.9
Q ss_pred EEEEcc-cHHHHHHHHHHHHcC----CeEEEEcCCCCcHHHH-H-------hC---CCceecChhhHhhcCCCEEEEecC
Q 044593 34 IAVIGF-GNFGQFLAKAFARHH----HTLLVHSRSDHSPAVR-Q-------QL---NAPFFADLNDLCELHPDVVLLSTS 97 (335)
Q Consensus 34 I~IIG~-G~mG~siA~~L~~~G----~~V~~~dr~~~~~~~a-~-------~~---g~~~~~~~~~~~~~~aDvVIlavp 97 (335)
|+|||+ |.||..++..|...| .+|+++|++++..+.. . .. .+..++|..+.+ ++||+||++.-
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~-~~aDiVv~t~~ 79 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAF-KDADVVIITAG 79 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHh-CCCCEEEECCC
Confidence 689999 999999999999988 6899999998654311 1 11 222344545556 89999999652
Q ss_pred c----------------hhHHHHHhhccccccCCccEEEEcCC
Q 044593 98 I----------------LSTQSVLKSIPFQRLKRSTLFVDVLS 124 (335)
Q Consensus 98 ~----------------~~~~~vl~~l~~~~l~~~~iVvd~~S 124 (335)
. ..+.++.+.+. . ..++++++.++.
T Consensus 80 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~-~-~~p~a~~i~~tN 120 (263)
T cd00650 80 VGRKPGMGRLDLLKRNVPIVKEIGDNIE-K-YSPDAWIIVVSN 120 (263)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHHHHHH-H-HCCCeEEEEecC
Confidence 2 12445555553 2 346777777653
No 200
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.71 E-value=0.00048 Score=63.91 Aligned_cols=100 Identities=23% Similarity=0.253 Sum_probs=64.8
Q ss_pred CeEEEEc-ccHHHHHHHHHHHH-cCCeEE-EEcCCC-CcH--HHHHh-----CCCceecChhhHhhcCCCEEEEecCchh
Q 044593 32 LKIAVIG-FGNFGQFLAKAFAR-HHHTLL-VHSRSD-HSP--AVRQQ-----LNAPFFADLNDLCELHPDVVLLSTSILS 100 (335)
Q Consensus 32 ~kI~IIG-~G~mG~siA~~L~~-~G~~V~-~~dr~~-~~~--~~a~~-----~g~~~~~~~~~~~~~~aDvVIlavp~~~ 100 (335)
+||+|+| +|.||..+++.+.+ .+++++ ++|++. ... ..... .|+..+++++++. ..+|+||.++|+..
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~-~~~DvVIdfT~p~~ 80 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVE-TDPDVLIDFTTPEG 80 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhc-CCCCEEEECCChHH
Confidence 6999999 69999999999986 467764 578543 221 11111 3555667887774 67999999999998
Q ss_pred HHHHHhhccccccCCc-cEEEEcCCCCchHHHHHHhh
Q 044593 101 TQSVLKSIPFQRLKRS-TLFVDVLSVKEFPRNLFLKY 136 (335)
Q Consensus 101 ~~~vl~~l~~~~l~~~-~iVvd~~SvK~~~~~~l~~~ 136 (335)
..+.+.... +.| .+|+-+.+......+.+.+.
T Consensus 81 ~~~~~~~al----~~g~~vVigttg~~~e~~~~l~~a 113 (266)
T TIGR00036 81 VLNHLKFAL----EHGVRLVVGTTGFSEEDKQELADL 113 (266)
T ss_pred HHHHHHHHH----HCCCCEEEECCCCCHHHHHHHHHH
Confidence 877776652 233 34444433333334444443
No 201
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=97.71 E-value=4.3e-05 Score=64.06 Aligned_cols=65 Identities=20% Similarity=0.320 Sum_probs=46.6
Q ss_pred CeEEEEcc-cHHHHHHHHHHHHcCC--eEEEEcCCCCcHH-HHHhC-------C--CceecChhhHhhcCCCEEEEecC
Q 044593 32 LKIAVIGF-GNFGQFLAKAFARHHH--TLLVHSRSDHSPA-VRQQL-------N--APFFADLNDLCELHPDVVLLSTS 97 (335)
Q Consensus 32 ~kI~IIG~-G~mG~siA~~L~~~G~--~V~~~dr~~~~~~-~a~~~-------g--~~~~~~~~~~~~~~aDvVIlavp 97 (335)
|||+|||+ |.+|+++|..|...+. ++.++|++++..+ .+.++ + .....+..+.+ ++||+||++.-
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~-~~aDivvitag 78 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEAL-KDADIVVITAG 78 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGG-TTESEEEETTS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccccccccc-ccccEEEEecc
Confidence 79999999 9999999999999875 8999999975332 22221 1 11222333344 79999999873
No 202
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.70 E-value=0.00011 Score=68.46 Aligned_cols=76 Identities=16% Similarity=0.242 Sum_probs=60.4
Q ss_pred CCCCeEEEEcccH-HHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593 29 STSLKIAVIGFGN-FGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS 107 (335)
Q Consensus 29 ~~~~kI~IIG~G~-mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~ 107 (335)
..+++|.|||.|. +|..+|..|.+.|..|+++++.. .++.+.+ .+||+||.|++.... +..
T Consensus 156 l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t--------------~~l~~~~-~~ADIVIsAvg~p~~---i~~ 217 (286)
T PRK14175 156 LEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS--------------KDMASYL-KDADVIVSAVGKPGL---VTK 217 (286)
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHH-hhCCEEEECCCCCcc---cCH
Confidence 4678999999977 99999999999999999998653 2345556 799999999987542 221
Q ss_pred ccccccCCccEEEEcCCC
Q 044593 108 IPFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 108 l~~~~l~~~~iVvd~~Sv 125 (335)
..+++|++|+|+++.
T Consensus 218 ---~~vk~gavVIDvGi~ 232 (286)
T PRK14175 218 ---DVVKEGAVIIDVGNT 232 (286)
T ss_pred ---HHcCCCcEEEEcCCC
Confidence 347789999999875
No 203
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.70 E-value=0.00012 Score=71.47 Aligned_cols=92 Identities=25% Similarity=0.367 Sum_probs=66.9
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCc-HHHHHhCCCce--ecChhhHhhcCCCEEEEecCchh---H
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHS-PAVRQQLNAPF--FADLNDLCELHPDVVLLSTSILS---T 101 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~-~~~a~~~g~~~--~~~~~~~~~~~aDvVIlavp~~~---~ 101 (335)
-+..++.|||+|-||...|+.|.++|. +|++.+|+.+. .+++.+.|..+ .+++.+.+ .++|+||.||.... .
T Consensus 176 L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l-~~~DvVissTsa~~~ii~ 254 (414)
T COG0373 176 LKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEAL-AEADVVISSTSAPHPIIT 254 (414)
T ss_pred cccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhh-hhCCEEEEecCCCccccC
Confidence 467899999999999999999999994 89999999865 46788888543 34555556 79999999986553 1
Q ss_pred HHHHhhccccccCCccEEEEcC
Q 044593 102 QSVLKSIPFQRLKRSTLFVDVL 123 (335)
Q Consensus 102 ~~vl~~l~~~~l~~~~iVvd~~ 123 (335)
.+-+..... -++.-+++|++
T Consensus 255 ~~~ve~a~~--~r~~~livDia 274 (414)
T COG0373 255 REMVERALK--IRKRLLIVDIA 274 (414)
T ss_pred HHHHHHHHh--cccCeEEEEec
Confidence 233333211 12235889986
No 204
>PRK08291 ectoine utilization protein EutC; Validated
Probab=97.67 E-value=0.00018 Score=68.88 Aligned_cols=91 Identities=19% Similarity=0.250 Sum_probs=64.3
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHH-cC-CeEEEEcCCCCcHH-HHHh----CCCc--eecChhhHhhcCCCEEEEecCch
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFAR-HH-HTLLVHSRSDHSPA-VRQQ----LNAP--FFADLNDLCELHPDVVLLSTSIL 99 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~-~G-~~V~~~dr~~~~~~-~a~~----~g~~--~~~~~~~~~~~~aDvVIlavp~~ 99 (335)
...++|+|||+|.+|.+.+.++.. .+ .+|.+|+|+++..+ .+.+ .|+. ...+.++++ .++|+||.|||..
T Consensus 130 ~~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al-~~aDiVi~aT~s~ 208 (330)
T PRK08291 130 EDASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAV-AGADIIVTTTPSE 208 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHH-ccCCEEEEeeCCC
Confidence 345799999999999999999885 45 48999999987543 2332 2554 356777777 7899999999976
Q ss_pred hHHHHHhhccccccCCccEEEEcCCC
Q 044593 100 STQSVLKSIPFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 100 ~~~~vl~~l~~~~l~~~~iVvd~~Sv 125 (335)
. .++.. ..+++++.|..+++-
T Consensus 209 ~--p~i~~---~~l~~g~~v~~vg~d 229 (330)
T PRK08291 209 E--PILKA---EWLHPGLHVTAMGSD 229 (330)
T ss_pred C--cEecH---HHcCCCceEEeeCCC
Confidence 4 22222 135677777776653
No 205
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=97.65 E-value=0.00021 Score=68.77 Aligned_cols=89 Identities=17% Similarity=0.234 Sum_probs=61.3
Q ss_pred CeEEEEcc-cHHHHHHHHHHHHc-CCeEE-EEcCCCCcHH-HHHhC----CC-c-eec--ChhhHhhcCCCEEEEecCch
Q 044593 32 LKIAVIGF-GNFGQFLAKAFARH-HHTLL-VHSRSDHSPA-VRQQL----NA-P-FFA--DLNDLCELHPDVVLLSTSIL 99 (335)
Q Consensus 32 ~kI~IIG~-G~mG~siA~~L~~~-G~~V~-~~dr~~~~~~-~a~~~----g~-~-~~~--~~~~~~~~~aDvVIlavp~~ 99 (335)
|||+|||+ |.+|..+++.|.+. ++++. +++++...-+ ..... +. . ... +..++. .++|+||+|+|..
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~DvVf~alP~~ 79 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIA-EDADVVFLALPHG 79 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhh-cCCCEEEECCCch
Confidence 68999997 99999999999876 46776 5465432111 11111 11 1 122 344554 5899999999999
Q ss_pred hHHHHHhhccccccCCccEEEEcCCC
Q 044593 100 STQSVLKSIPFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 100 ~~~~vl~~l~~~~l~~~~iVvd~~Sv 125 (335)
...++...+. ..|+.|+|+++-
T Consensus 80 ~s~~~~~~~~----~~G~~VIDlS~~ 101 (346)
T TIGR01850 80 VSAELAPELL----AAGVKVIDLSAD 101 (346)
T ss_pred HHHHHHHHHH----hCCCEEEeCChh
Confidence 8888887763 367899999865
No 206
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=97.63 E-value=0.00025 Score=71.21 Aligned_cols=89 Identities=18% Similarity=0.207 Sum_probs=66.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce-ecC--------------------------hhh
Q 044593 31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF-FAD--------------------------LND 83 (335)
Q Consensus 31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~-~~~--------------------------~~~ 83 (335)
..|+.|+|+|.+|...+..++..|..|+++|++++..+.++.+|... ..+ ..+
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e 243 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAA 243 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999998888788777653 101 122
Q ss_pred HhhcCCCEEEEec-----Cch--hHHHHHhhccccccCCccEEEEcCCC
Q 044593 84 LCELHPDVVLLST-----SIL--STQSVLKSIPFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 84 ~~~~~aDvVIlav-----p~~--~~~~vl~~l~~~~l~~~~iVvd~~Sv 125 (335)
.+ +++|+||-|+ |.. .+++.+ ..+++|.+|+|++.-
T Consensus 244 ~~-~~~DIVI~TalipG~~aP~Lit~emv-----~~MKpGsvIVDlA~d 286 (511)
T TIGR00561 244 QA-KEVDIIITTALIPGKPAPKLITEEMV-----DSMKAGSVIVDLAAE 286 (511)
T ss_pred Hh-CCCCEEEECcccCCCCCCeeehHHHH-----hhCCCCCEEEEeeeC
Confidence 23 6899999988 332 233333 346799999999743
No 207
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=97.57 E-value=0.00022 Score=77.05 Aligned_cols=90 Identities=19% Similarity=0.182 Sum_probs=62.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcC-Ce-------------EEEEcCCCCcHHH-HHhC-CC---ce-ecChhhHhh--c
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHH-HT-------------LLVHSRSDHSPAV-RQQL-NA---PF-FADLNDLCE--L 87 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G-~~-------------V~~~dr~~~~~~~-a~~~-g~---~~-~~~~~~~~~--~ 87 (335)
+++||+|||+|.||...+..|.+.. ++ |++.|++.+..+. +... ++ .. ..+.+++.. .
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~ 647 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS 647 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence 4679999999999999999998753 33 8889999865543 3333 43 22 445555431 5
Q ss_pred CCCEEEEecCchhHHHHHhhccccccCCccEEEEcC
Q 044593 88 HPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVL 123 (335)
Q Consensus 88 ~aDvVIlavp~~~~~~vl~~l~~~~l~~~~iVvd~~ 123 (335)
++|+||+|+|......+++.. ++.|.-+++.+
T Consensus 648 ~~DaVIsalP~~~H~~VAkaA----ieaGkHvv~ek 679 (1042)
T PLN02819 648 QVDVVISLLPASCHAVVAKAC----IELKKHLVTAS 679 (1042)
T ss_pred CCCEEEECCCchhhHHHHHHH----HHcCCCEEECc
Confidence 799999999998766666654 33455555554
No 208
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=97.57 E-value=0.00027 Score=56.59 Aligned_cols=91 Identities=14% Similarity=0.170 Sum_probs=62.1
Q ss_pred EEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCcee----cChhhH---hhcCCCEEEEecCchhHHHHHh
Q 044593 34 IAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFF----ADLNDL---CELHPDVVLLSTSILSTQSVLK 106 (335)
Q Consensus 34 I~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~----~~~~~~---~~~~aDvVIlavp~~~~~~vl~ 106 (335)
|.|+|+|.+|..++..|.+.+.+|+++|++++..+.+.+.|+... ++.+.+ -..++|.+|++++.+...-.+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~~~~ 80 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEENLLIA 80 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHHHHHH
Confidence 679999999999999999977799999999988888888886531 222221 1268999999999886443332
Q ss_pred hccccccCCccEEEEcCC
Q 044593 107 SIPFQRLKRSTLFVDVLS 124 (335)
Q Consensus 107 ~l~~~~l~~~~iVvd~~S 124 (335)
.......+...+++-+.+
T Consensus 81 ~~~r~~~~~~~ii~~~~~ 98 (116)
T PF02254_consen 81 LLARELNPDIRIIARVND 98 (116)
T ss_dssp HHHHHHTTTSEEEEEESS
T ss_pred HHHHHHCCCCeEEEEECC
Confidence 221122333456665544
No 209
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=97.56 E-value=0.00023 Score=66.43 Aligned_cols=118 Identities=18% Similarity=0.174 Sum_probs=75.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcH-HHHHhCC---C-ceecChhhHhh-cCCCEEEEecCchhHH
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSP-AVRQQLN---A-PFFADLNDLCE-LHPDVVLLSTSILSTQ 102 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~-~~a~~~g---~-~~~~~~~~~~~-~~aDvVIlavp~~~~~ 102 (335)
+..++.|+|+|-.+.+++..|++.|. +|++++|+.+.. +++...+ . .......++.. .++|+||-|||.....
T Consensus 125 ~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~Gm~~ 204 (283)
T COG0169 125 TGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVGMAG 204 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCCCCC
Confidence 46889999999999999999999995 899999998654 3333332 1 11111222210 2589999999987643
Q ss_pred HHHh-hccccccCCccEEEEcC--CCCchHHHHHHhhCCCCCceEeccccC
Q 044593 103 SVLK-SIPFQRLKRSTLFVDVL--SVKEFPRNLFLKYLPQDFDILCTHPMF 150 (335)
Q Consensus 103 ~vl~-~l~~~~l~~~~iVvd~~--SvK~~~~~~l~~~l~~~~~~v~~HPma 150 (335)
..-. -+....++++.++.|+- ...++.++..++ .+..++.+..|.
T Consensus 205 ~~~~~~~~~~~l~~~~~v~D~vY~P~~TplL~~A~~---~G~~~idGl~Ml 252 (283)
T COG0169 205 PEGDSPVPAELLPKGAIVYDVVYNPLETPLLREARA---QGAKTIDGLGML 252 (283)
T ss_pred CCCCCCCcHHhcCcCCEEEEeccCCCCCHHHHHHHH---cCCeEECcHHHH
Confidence 3111 11113477889999984 334555555544 234466666665
No 210
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=97.55 E-value=0.00048 Score=65.06 Aligned_cols=87 Identities=20% Similarity=0.305 Sum_probs=57.1
Q ss_pred EEEEcccHHHHHHHHHHHHcC--CeEEEEcCCCCcHH-HHHhC-------C-Cce--ecChhhHhhcCCCEEEEecCchh
Q 044593 34 IAVIGFGNFGQFLAKAFARHH--HTLLVHSRSDHSPA-VRQQL-------N-APF--FADLNDLCELHPDVVLLSTSILS 100 (335)
Q Consensus 34 I~IIG~G~mG~siA~~L~~~G--~~V~~~dr~~~~~~-~a~~~-------g-~~~--~~~~~~~~~~~aDvVIlavp~~~ 100 (335)
|+|||+|.+|+++|..+...| .+++++|++++..+ .+.++ . ... ..+.++ + ++||+||++.....
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~-l-~~aDiVIitag~p~ 78 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYAD-A-ADADIVVITAGAPR 78 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHHH-h-CCCCEEEEcCCCCC
Confidence 689999999999999999988 58999999886543 12211 1 111 233444 4 79999999886421
Q ss_pred ----------------HHHHHhhccccccCCccEEEEcCC
Q 044593 101 ----------------TQSVLKSIPFQRLKRSTLFVDVLS 124 (335)
Q Consensus 101 ----------------~~~vl~~l~~~~l~~~~iVvd~~S 124 (335)
+.++.+.+. . ..++.+|+.+++
T Consensus 79 ~~~~~R~~l~~~n~~i~~~~~~~i~-~-~~p~~~viv~sN 116 (300)
T cd00300 79 KPGETRLDLINRNAPILRSVITNLK-K-YGPDAIILVVSN 116 (300)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH-H-hCCCeEEEEccC
Confidence 334444453 2 336667776653
No 211
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=97.54 E-value=0.00012 Score=63.41 Aligned_cols=67 Identities=25% Similarity=0.231 Sum_probs=49.1
Q ss_pred CeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHH-----hCCCceecChhhHhhcCCCEEEEecCch
Q 044593 32 LKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQ-----QLNAPFFADLNDLCELHPDVVLLSTSIL 99 (335)
Q Consensus 32 ~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~-----~~g~~~~~~~~~~~~~~aDvVIlavp~~ 99 (335)
|||+||| .|..|+.|+.-..++||+|+++-||+....... +..+..-+...+.+ .+.|+||.+....
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l-~g~DaVIsA~~~~ 73 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDL-AGHDAVISAFGAG 73 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhh-cCCceEEEeccCC
Confidence 7999999 599999999999999999999999987654211 11221122223444 6899999987654
No 212
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.53 E-value=0.0003 Score=67.65 Aligned_cols=94 Identities=15% Similarity=0.109 Sum_probs=67.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHc-C-CeEEEEcCCCCcHH-HH---HhCCC--ceecChhhHhhcCCCEEEEecCchhH
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARH-H-HTLLVHSRSDHSPA-VR---QQLNA--PFFADLNDLCELHPDVVLLSTSILST 101 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~-G-~~V~~~dr~~~~~~-~a---~~~g~--~~~~~~~~~~~~~aDvVIlavp~~~~ 101 (335)
...+++|||+|..|.+.+.++..- . .+|.+|+|+++..+ .+ .+.++ ....+.++++ .++|+|+.|||....
T Consensus 128 da~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av-~~ADIIvtaT~S~~~ 206 (346)
T PRK07589 128 DSRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAV-EGADIITTVTADKTN 206 (346)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHH-hcCCEEEEecCCCCC
Confidence 457899999999999998887763 3 38999999987543 22 22344 3457788888 899999999985443
Q ss_pred HHHHhhccccccCCccEEEEcCCCCc
Q 044593 102 QSVLKSIPFQRLKRSTLFVDVLSVKE 127 (335)
Q Consensus 102 ~~vl~~l~~~~l~~~~iVvd~~SvK~ 127 (335)
..+++. ..+++|+.|.-++|-+.
T Consensus 207 ~Pvl~~---~~lkpG~hV~aIGs~~p 229 (346)
T PRK07589 207 ATILTD---DMVEPGMHINAVGGDCP 229 (346)
T ss_pred CceecH---HHcCCCcEEEecCCCCC
Confidence 234432 35789999888887654
No 213
>PRK06823 ornithine cyclodeaminase; Validated
Probab=97.53 E-value=0.00048 Score=65.45 Aligned_cols=93 Identities=15% Similarity=0.185 Sum_probs=68.5
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHc-C-CeEEEEcCCCCcHH-H---HHhCCCce--ecChhhHhhcCCCEEEEecCchh
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARH-H-HTLLVHSRSDHSPA-V---RQQLNAPF--FADLNDLCELHPDVVLLSTSILS 100 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~-G-~~V~~~dr~~~~~~-~---a~~~g~~~--~~~~~~~~~~~aDvVIlavp~~~ 100 (335)
....+++|||+|..|.+.+.++... . .+|.+|+|+++..+ . .++.++.. ..+.++++ .++|+|+.||+...
T Consensus 126 ~d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av-~~ADIV~taT~s~~ 204 (315)
T PRK06823 126 QHVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVA-HAANLIVTTTPSRE 204 (315)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHh-cCCCEEEEecCCCC
Confidence 3467899999999999999998764 2 38999999987643 2 23334443 56778887 89999999998654
Q ss_pred HHHHHhhccccccCCccEEEEcCCCCc
Q 044593 101 TQSVLKSIPFQRLKRSTLFVDVLSVKE 127 (335)
Q Consensus 101 ~~~vl~~l~~~~l~~~~iVvd~~SvK~ 127 (335)
.+++. ..+++|+.|.-+++-+.
T Consensus 205 --P~~~~---~~l~~G~hi~~iGs~~p 226 (315)
T PRK06823 205 --PLLQA---EDIQPGTHITAVGADSP 226 (315)
T ss_pred --ceeCH---HHcCCCcEEEecCCCCc
Confidence 33321 35789999999987644
No 214
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.52 E-value=0.00018 Score=70.81 Aligned_cols=72 Identities=17% Similarity=0.400 Sum_probs=55.5
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCc-HHHHHhCC-Cc--eecChhhHhhcCCCEEEEecCchh
Q 044593 28 KSTSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHS-PAVRQQLN-AP--FFADLNDLCELHPDVVLLSTSILS 100 (335)
Q Consensus 28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~-~~~a~~~g-~~--~~~~~~~~~~~~aDvVIlavp~~~ 100 (335)
....+||.|||+|.||..++..|...|. +|++++|+.+. ...+.+.+ .. ...++.+.+ .++|+||.||+...
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l-~~aDiVI~aT~a~~ 254 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLI-KKADIIIAAVNVLE 254 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHh-ccCCEEEECcCCCC
Confidence 3467899999999999999999999995 79999999764 34555554 32 224445555 78999999998765
No 215
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=97.51 E-value=0.00038 Score=70.07 Aligned_cols=94 Identities=18% Similarity=0.263 Sum_probs=68.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCcee-cCh---------------hh-------H-h
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFF-ADL---------------ND-------L-C 85 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~-~~~---------------~~-------~-~ 85 (335)
...||.|+|+|.+|...+..++..|.+|+++|++++..+.++++|.... .+. .+ . .
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~ 243 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFA 243 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHHH
Confidence 4689999999999999999999999999999999999888999988622 100 01 1 1
Q ss_pred h--cCCCEEEEecCchh--HHHH-HhhccccccCCccEEEEcCC
Q 044593 86 E--LHPDVVLLSTSILS--TQSV-LKSIPFQRLKRSTLFVDVLS 124 (335)
Q Consensus 86 ~--~~aDvVIlavp~~~--~~~v-l~~l~~~~l~~~~iVvd~~S 124 (335)
. .++|+||-|+.... ...+ .++.- ..+++|.+|+|++.
T Consensus 244 ~~~~gaDVVIetag~pg~~aP~lit~~~v-~~mkpGgvIVdvg~ 286 (509)
T PRK09424 244 EQAKEVDIIITTALIPGKPAPKLITAEMV-ASMKPGSVIVDLAA 286 (509)
T ss_pred hccCCCCEEEECCCCCcccCcchHHHHHH-HhcCCCCEEEEEcc
Confidence 0 36999999986432 1122 23331 34678999999864
No 216
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=97.50 E-value=0.00066 Score=51.76 Aligned_cols=65 Identities=17% Similarity=0.304 Sum_probs=49.9
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHc-CCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARH-HHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS 107 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~-G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~ 107 (335)
...++++|+|.|.+|..++..+.+. +.+|++||| |++|.|++......-- .
T Consensus 21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r---------------------------di~i~~~~~~~~~~~~-~ 72 (86)
T cd05191 21 LKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR---------------------------DILVTATPAGVPVLEE-A 72 (86)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC---------------------------CEEEEcCCCCCCchHH-H
Confidence 4567999999999999999999998 568999988 8899999876532110 1
Q ss_pred ccccccCCccEEEEcC
Q 044593 108 IPFQRLKRSTLFVDVL 123 (335)
Q Consensus 108 l~~~~l~~~~iVvd~~ 123 (335)
+ ..++++.+|+|++
T Consensus 73 ~--~~~~~~~~v~~~a 86 (86)
T cd05191 73 T--AKINEGAVVIDLA 86 (86)
T ss_pred H--HhcCCCCEEEecC
Confidence 2 2356788999863
No 217
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=97.50 E-value=0.00065 Score=56.87 Aligned_cols=78 Identities=19% Similarity=0.260 Sum_probs=62.0
Q ss_pred CCCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHh
Q 044593 28 KSTSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLK 106 (335)
Q Consensus 28 ~~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~ 106 (335)
+..+++|.|+| .+..|..++..|.+.|..|+.++++.. ++.+.+ ++||+||.+++....
T Consensus 25 ~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~--------------~l~~~v-~~ADIVvsAtg~~~~----- 84 (140)
T cd05212 25 RLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTI--------------QLQSKV-HDADVVVVGSPKPEK----- 84 (140)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCc--------------CHHHHH-hhCCEEEEecCCCCc-----
Confidence 34688999999 689999999999999999999986543 334556 799999999986632
Q ss_pred hccccccCCccEEEEcCCCC
Q 044593 107 SIPFQRLKRSTLFVDVLSVK 126 (335)
Q Consensus 107 ~l~~~~l~~~~iVvd~~SvK 126 (335)
+....+++|++|+|++..+
T Consensus 85 -i~~~~ikpGa~Vidvg~~~ 103 (140)
T cd05212 85 -VPTEWIKPGATVINCSPTK 103 (140)
T ss_pred -cCHHHcCCCCEEEEcCCCc
Confidence 3235689999999998654
No 218
>PLN02602 lactate dehydrogenase
Probab=97.49 E-value=0.00062 Score=65.62 Aligned_cols=64 Identities=17% Similarity=0.279 Sum_probs=46.6
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCC--eEEEEcCCCCcHH-HHHhC-------C-Ccee--cChhhHhhcCCCEEEEecC
Q 044593 32 LKIAVIGFGNFGQFLAKAFARHHH--TLLVHSRSDHSPA-VRQQL-------N-APFF--ADLNDLCELHPDVVLLSTS 97 (335)
Q Consensus 32 ~kI~IIG~G~mG~siA~~L~~~G~--~V~~~dr~~~~~~-~a~~~-------g-~~~~--~~~~~~~~~~aDvVIlavp 97 (335)
+||+|||+|.+|+++|..+...|. ++.++|++++..+ .+.++ + .... .+.++ + ++||+||++.-
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~~-~-~daDiVVitAG 114 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYAV-T-AGSDLCIVTAG 114 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHHH-h-CCCCEEEECCC
Confidence 699999999999999999998875 7999999886432 22221 1 1222 34455 4 79999999853
No 219
>PRK11579 putative oxidoreductase; Provisional
Probab=97.49 E-value=0.0005 Score=66.05 Aligned_cols=76 Identities=16% Similarity=0.222 Sum_probs=54.2
Q ss_pred CCeEEEEcccHHHHH-HHHHHHHc-CCeEE-EEcCCCCcHHHHHhC-CCceecChhhHhh-cCCCEEEEecCchhHHHHH
Q 044593 31 SLKIAVIGFGNFGQF-LAKAFARH-HHTLL-VHSRSDHSPAVRQQL-NAPFFADLNDLCE-LHPDVVLLSTSILSTQSVL 105 (335)
Q Consensus 31 ~~kI~IIG~G~mG~s-iA~~L~~~-G~~V~-~~dr~~~~~~~a~~~-g~~~~~~~~~~~~-~~aDvVIlavp~~~~~~vl 105 (335)
.+||||||+|.||.. .+..+... +++++ ++|++++... ... +...+++.++++. .+.|+|++|||...-.++.
T Consensus 4 ~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~--~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H~~~~ 81 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVK--ADWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTHFPLA 81 (346)
T ss_pred cceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHH--hhCCCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHH
Confidence 479999999999984 56666654 57775 6788865432 233 4456788888872 3689999999998766655
Q ss_pred hhc
Q 044593 106 KSI 108 (335)
Q Consensus 106 ~~l 108 (335)
...
T Consensus 82 ~~a 84 (346)
T PRK11579 82 KAA 84 (346)
T ss_pred HHH
Confidence 543
No 220
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.47 E-value=0.00045 Score=65.28 Aligned_cols=93 Identities=12% Similarity=0.020 Sum_probs=68.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHc-CC-eEEEEcCCCCcHH-HHHh----CCC--ceecChhhHhhcCCCEEEEecCch
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARH-HH-TLLVHSRSDHSPA-VRQQ----LNA--PFFADLNDLCELHPDVVLLSTSIL 99 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~-G~-~V~~~dr~~~~~~-~a~~----~g~--~~~~~~~~~~~~~aDvVIlavp~~ 99 (335)
....+++|||+|..|.+.+.++... .. +|.+|+|+++..+ .+.+ .|+ ....+.++++ .+||+|+.||+..
T Consensus 115 ~da~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav-~~aDIV~taT~s~ 193 (301)
T PRK06407 115 KNVENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAAL-RDADTITSITNSD 193 (301)
T ss_pred cCCcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHH-hcCCEEEEecCCC
Confidence 3567899999999999999998874 33 8999999987643 2222 254 3457788888 8999999999966
Q ss_pred hHHHHHhhccccccCCccEEEEcCCCCc
Q 044593 100 STQSVLKSIPFQRLKRSTLFVDVLSVKE 127 (335)
Q Consensus 100 ~~~~vl~~l~~~~l~~~~iVvd~~SvK~ 127 (335)
. .++. ...+++|+.|.-+++-+.
T Consensus 194 ~--P~~~---~~~l~pg~hV~aiGs~~p 216 (301)
T PRK06407 194 T--PIFN---RKYLGDEYHVNLAGSNYP 216 (301)
T ss_pred C--cEec---HHHcCCCceEEecCCCCC
Confidence 4 2332 134678888888887543
No 221
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.44 E-value=0.00053 Score=64.13 Aligned_cols=76 Identities=16% Similarity=0.232 Sum_probs=58.4
Q ss_pred CCCCeEEEEcccH-HHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593 29 STSLKIAVIGFGN-FGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS 107 (335)
Q Consensus 29 ~~~~kI~IIG~G~-mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~ 107 (335)
..+++|.|||.|. .|..++..|.+.|..|+++++... ++.+.+ .++|+||.||+... .+.
T Consensus 157 l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~--------------~L~~~~-~~aDIvI~AtG~~~---~v~- 217 (283)
T PRK14192 157 LAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQ--------------NLPELV-KQADIIVGAVGKPE---LIK- 217 (283)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCch--------------hHHHHh-ccCCEEEEccCCCC---cCC-
Confidence 4678999999987 999999999999999999987322 234445 78999999996333 221
Q ss_pred ccccccCCccEEEEcCCC
Q 044593 108 IPFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 108 l~~~~l~~~~iVvd~~Sv 125 (335)
...++++++|+|++..
T Consensus 218 --~~~lk~gavViDvg~n 233 (283)
T PRK14192 218 --KDWIKQGAVVVDAGFH 233 (283)
T ss_pred --HHHcCCCCEEEEEEEe
Confidence 2457899999999743
No 222
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.42 E-value=0.0004 Score=64.79 Aligned_cols=76 Identities=21% Similarity=0.218 Sum_probs=59.5
Q ss_pred CCCCeEEEEcccHH-HHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593 29 STSLKIAVIGFGNF-GQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS 107 (335)
Q Consensus 29 ~~~~kI~IIG~G~m-G~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~ 107 (335)
..+++|+|||.|.+ |.-++..|.+.|..|+++.... .++.+.+ +++|+||.|++... ++.
T Consensus 156 l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t--------------~~l~~~~-~~ADIVV~avG~~~---~i~- 216 (285)
T PRK14189 156 LRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKT--------------RDLAAHT-RQADIVVAAVGKRN---VLT- 216 (285)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCC--------------CCHHHHh-hhCCEEEEcCCCcC---ccC-
Confidence 35789999998776 9999999999999999876432 2445566 79999999999543 222
Q ss_pred ccccccCCccEEEEcCCC
Q 044593 108 IPFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 108 l~~~~l~~~~iVvd~~Sv 125 (335)
...+++|++|+|++..
T Consensus 217 --~~~ik~gavVIDVGin 232 (285)
T PRK14189 217 --ADMVKPGATVIDVGMN 232 (285)
T ss_pred --HHHcCCCCEEEEcccc
Confidence 2468899999999854
No 223
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=97.41 E-value=0.0005 Score=65.90 Aligned_cols=90 Identities=14% Similarity=0.128 Sum_probs=60.2
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHHcCC---eEEEEcCCCCcHHHHHhCCCc-eecChh-hHhhcCCCEEEEecCchhHHHH
Q 044593 31 SLKIAVIG-FGNFGQFLAKAFARHHH---TLLVHSRSDHSPAVRQQLNAP-FFADLN-DLCELHPDVVLLSTSILSTQSV 104 (335)
Q Consensus 31 ~~kI~IIG-~G~mG~siA~~L~~~G~---~V~~~dr~~~~~~~a~~~g~~-~~~~~~-~~~~~~aDvVIlavp~~~~~~v 104 (335)
++||+||| .|..|.-+.+.|.+.|| ++....++...-+...-.|.. ...+.. ... .++|+||+|+|.....++
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~-~~vDvVf~A~g~g~s~~~ 79 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDF-SGVDIALFSAGGSVSKKY 79 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHH-cCCCEEEECCChHHHHHH
Confidence 47999999 69999999999999877 445554443221111111211 112222 223 689999999999988888
Q ss_pred HhhccccccCCccEEEEcCCC
Q 044593 105 LKSIPFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 105 l~~l~~~~l~~~~iVvd~~Sv 125 (335)
...+ ++.|..|+|.++-
T Consensus 80 ~~~~----~~~G~~VIDlS~~ 96 (334)
T PRK14874 80 APKA----AAAGAVVIDNSSA 96 (334)
T ss_pred HHHH----HhCCCEEEECCch
Confidence 8766 3467899999863
No 224
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=97.41 E-value=0.0011 Score=56.64 Aligned_cols=77 Identities=18% Similarity=0.219 Sum_probs=53.2
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593 29 STSLKIAVIGF-GNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS 107 (335)
Q Consensus 29 ~~~~kI~IIG~-G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~ 107 (335)
..+++|.|||- +.+|..++..|.+.|..|+.++...+ ++.+.. +++|+||.|+.....
T Consensus 34 l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~--------------~l~~~~-~~ADIVVsa~G~~~~------ 92 (160)
T PF02882_consen 34 LEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTK--------------NLQEIT-RRADIVVSAVGKPNL------ 92 (160)
T ss_dssp TTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSS--------------SHHHHH-TTSSEEEE-SSSTT-------
T ss_pred CCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCC--------------ccccee-eeccEEeeeeccccc------
Confidence 46889999995 57999999999999999999876643 334555 789999999986543
Q ss_pred ccccccCCccEEEEcCCCC
Q 044593 108 IPFQRLKRSTLFVDVLSVK 126 (335)
Q Consensus 108 l~~~~l~~~~iVvd~~SvK 126 (335)
+....+++|++|+|++...
T Consensus 93 i~~~~ik~gavVIDvG~~~ 111 (160)
T PF02882_consen 93 IKADWIKPGAVVIDVGINY 111 (160)
T ss_dssp B-GGGS-TTEEEEE--CEE
T ss_pred cccccccCCcEEEecCCcc
Confidence 2235689999999998653
No 225
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=97.39 E-value=0.00018 Score=67.80 Aligned_cols=63 Identities=27% Similarity=0.395 Sum_probs=44.6
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCC--eEEEEcCCCCcHH-HHHhC---------CCceec--ChhhHhhcCCCEEEEec
Q 044593 32 LKIAVIGFGNFGQFLAKAFARHHH--TLLVHSRSDHSPA-VRQQL---------NAPFFA--DLNDLCELHPDVVLLST 96 (335)
Q Consensus 32 ~kI~IIG~G~mG~siA~~L~~~G~--~V~~~dr~~~~~~-~a~~~---------g~~~~~--~~~~~~~~~aDvVIlav 96 (335)
+||+|||+|.+|+++|..|...+. ++.++|++++..+ .+.++ ...... +.++ + +++|+||++.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~-~-~~aDiVvitA 77 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYED-L-KGADIVVITA 77 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhh-h-cCCCEEEEeC
Confidence 699999999999999999977663 8999999954332 22221 111222 2344 4 7999999987
No 226
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=97.39 E-value=0.00097 Score=63.22 Aligned_cols=64 Identities=23% Similarity=0.392 Sum_probs=45.4
Q ss_pred CeEEEEcc-cHHHHHHHHHHHHcCC--eEEEEcCCC--CcHH-HHH-------hCCC--c--eecChhhHhhcCCCEEEE
Q 044593 32 LKIAVIGF-GNFGQFLAKAFARHHH--TLLVHSRSD--HSPA-VRQ-------QLNA--P--FFADLNDLCELHPDVVLL 94 (335)
Q Consensus 32 ~kI~IIG~-G~mG~siA~~L~~~G~--~V~~~dr~~--~~~~-~a~-------~~g~--~--~~~~~~~~~~~~aDvVIl 94 (335)
|||+|||+ |.+|..++..|...|+ +|+++|+++ +..+ .+. ..+. . ...+.++ + .++|+||+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~~-l-~~aDiVii 78 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLSD-V-AGSDIVII 78 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCHHH-h-CCCCEEEE
Confidence 79999997 9999999999999986 599999965 2221 010 1121 1 2234454 4 89999999
Q ss_pred ecC
Q 044593 95 STS 97 (335)
Q Consensus 95 avp 97 (335)
|..
T Consensus 79 tag 81 (309)
T cd05294 79 TAG 81 (309)
T ss_pred ecC
Confidence 985
No 227
>PRK15076 alpha-galactosidase; Provisional
Probab=97.39 E-value=0.00053 Score=67.97 Aligned_cols=68 Identities=13% Similarity=0.040 Sum_probs=47.6
Q ss_pred CCeEEEEcccHHHHHHHH--HHH--H--cCCeEEEEcCCCCcHHHHH--------hCC----CceecChhhHhhcCCCEE
Q 044593 31 SLKIAVIGFGNFGQFLAK--AFA--R--HHHTLLVHSRSDHSPAVRQ--------QLN----APFFADLNDLCELHPDVV 92 (335)
Q Consensus 31 ~~kI~IIG~G~mG~siA~--~L~--~--~G~~V~~~dr~~~~~~~a~--------~~g----~~~~~~~~~~~~~~aDvV 92 (335)
++||+|||.|.||.+.+. .+. . .+.+|+++|++++..+.+. ..+ +..++|..+.+ ++||+|
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal-~dADfV 79 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREAL-QGADYV 79 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHh-CCCCEE
Confidence 379999999999976655 443 1 2468999999986654221 122 22456766766 899999
Q ss_pred EEecCch
Q 044593 93 LLSTSIL 99 (335)
Q Consensus 93 Ilavp~~ 99 (335)
|.+.-..
T Consensus 80 v~ti~vg 86 (431)
T PRK15076 80 INAIQVG 86 (431)
T ss_pred eEeeeeC
Confidence 9988765
No 228
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=97.38 E-value=0.00066 Score=59.62 Aligned_cols=93 Identities=17% Similarity=0.172 Sum_probs=64.6
Q ss_pred CCCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHH-HHHhCCCcee--cC----hhhHhhcCCCEEEEecCch
Q 044593 28 KSTSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPA-VRQQLNAPFF--AD----LNDLCELHPDVVLLSTSIL 99 (335)
Q Consensus 28 ~~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~-~a~~~g~~~~--~~----~~~~~~~~aDvVIlavp~~ 99 (335)
+..+++|.||| ...+|.-+|..|.+.|..|+++|.+.-... ......-..+ .+ +.+.+ ++||+||.|++..
T Consensus 59 ~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~-~~ADIVIsAvG~~ 137 (197)
T cd01079 59 RLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCL-SQSDVVITGVPSP 137 (197)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHh-hhCCEEEEccCCC
Confidence 35689999999 678899999999999999999986542211 0000001111 12 45666 8999999999866
Q ss_pred hHHHHHhhccccccCCccEEEEcCCCC
Q 044593 100 STQSVLKSIPFQRLKRSTLFVDVLSVK 126 (335)
Q Consensus 100 ~~~~vl~~l~~~~l~~~~iVvd~~SvK 126 (335)
... +....+++|++|+|++..+
T Consensus 138 ~~~-----i~~d~ik~GavVIDVGi~~ 159 (197)
T cd01079 138 NYK-----VPTELLKDGAICINFASIK 159 (197)
T ss_pred CCc-----cCHHHcCCCcEEEEcCCCc
Confidence 541 2234688999999998664
No 229
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=97.38 E-value=0.00058 Score=70.55 Aligned_cols=72 Identities=14% Similarity=0.290 Sum_probs=58.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce----ecChhhHh---hcCCCEEEEecCchhHH
Q 044593 31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF----FADLNDLC---ELHPDVVLLSTSILSTQ 102 (335)
Q Consensus 31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~----~~~~~~~~---~~~aDvVIlavp~~~~~ 102 (335)
.++|.|+|+|.+|..+++.|.+.|++++++|.|++..+.+++.|... .++.+-+- .++||.+|++++.+...
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n 478 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDT 478 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHH
Confidence 57899999999999999999999999999999999888888888742 22322221 16899999999988654
No 230
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.37 E-value=0.0049 Score=59.57 Aligned_cols=183 Identities=18% Similarity=0.203 Sum_probs=107.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHH-H--HHhC--CC--------------------ceecChhhH
Q 044593 31 SLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPA-V--RQQL--NA--------------------PFFADLNDL 84 (335)
Q Consensus 31 ~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~-~--a~~~--g~--------------------~~~~~~~~~ 84 (335)
|.+|.|+|.|..+-.+|..+++.+. +|-++.|.....+ . +.+. +. ..+.+.+++
T Consensus 1 m~~VLI~GtGPvAiQLAv~lk~~~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~~~~i 80 (429)
T PF10100_consen 1 MGNVLIVGTGPVAIQLAVILKKHGNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQDYEEI 80 (429)
T ss_pred CCceEEEcCCHHHHHHHHHHHhccCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcCHHHh
Confidence 4589999999999999999998764 7888888653322 1 1111 11 023455565
Q ss_pred hhcCCCEEEEecCchhHHHHHhhccccccCCccEEEEcCCCCc--hHHHHHHhhCCCCCceEeccccCCCCCcccccCC-
Q 044593 85 CELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKE--FPRNLFLKYLPQDFDILCTHPMFGPESAKSSWEN- 161 (335)
Q Consensus 85 ~~~~aDvVIlavp~~~~~~vl~~l~~~~l~~~~iVvd~~SvK~--~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g- 161 (335)
. .+-|.+|+|||.++..+|+++|....++.=..|+=++.+-+ -.++.+-.....++.+|+.--=.|...-. .+
T Consensus 81 ~-g~WdtlILavtaDAY~~VL~ql~~~~L~~vk~iVLvSPtfGS~~lv~~~l~~~~~~~EVISFStY~gdTr~~---d~~ 156 (429)
T PF10100_consen 81 E-GEWDTLILAVTADAYLDVLQQLPWEVLKRVKSIVLVSPTFGSHLLVKGFLNDLGPDAEVISFSTYYGDTRWS---DGE 156 (429)
T ss_pred c-ccccEEEEEechHHHHHHHHhcCHHHHhhCCEEEEECcccchHHHHHHHHHhcCCCceEEEeecccccceec---cCC
Confidence 5 67899999999999999999996444443334444443322 22333333334456666654333333210 11
Q ss_pred Cc-ceeccc-----ccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHh--hhhHHHH
Q 044593 162 LP-FMYDKV-----RIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGS--QFVTHTM 217 (335)
Q Consensus 162 ~~-~i~~~~-----~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~--s~lph~l 217 (335)
.+ -+++.. .+++...+...+.++..+++.+|-.+..|+..-|-+.-..+ -|-|.++
T Consensus 157 ~~~~vlt~~vK~kiYigSt~~~s~~~~~l~~~~~~~gI~~~~~~~pl~AE~rNislYVHpplfm 220 (429)
T PF10100_consen 157 QPNRVLTTAVKKKIYIGSTHSNSPELDKLCRLLAQLGIQLEVMDNPLEAESRNISLYVHPPLFM 220 (429)
T ss_pred CcceehhhhhhceEEEEeCCCCChHHHHHHHHHHHcCCeEEEeCChHhhhhcccceecCChHhh
Confidence 01 111111 12333333456788999999999999999866555433222 2455555
No 231
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=97.37 E-value=0.00026 Score=61.05 Aligned_cols=93 Identities=17% Similarity=0.203 Sum_probs=59.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce--e------------------------cChhh
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF--F------------------------ADLND 83 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~--~------------------------~~~~~ 83 (335)
...||.|+|.|..|..-+..+...|++|+.+|.+++..+.....+... . ..+.+
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 98 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFAE 98 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHHH
Confidence 458999999999999999999999999999999877665555544321 1 01223
Q ss_pred HhhcCCCEEEEecC--chhHHHHHhhccccccCCccEEEEcC
Q 044593 84 LCELHPDVVLLSTS--ILSTQSVLKSIPFQRLKRSTLFVDVL 123 (335)
Q Consensus 84 ~~~~~aDvVIlavp--~~~~~~vl~~l~~~~l~~~~iVvd~~ 123 (335)
.+ ..+|+||.++- ......++.+-....++++.+|+|++
T Consensus 99 ~i-~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 99 FI-APADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HH-HH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HH-hhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 33 67999998553 33333333221113467999999995
No 232
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=97.37 E-value=0.00031 Score=70.51 Aligned_cols=86 Identities=17% Similarity=0.284 Sum_probs=59.8
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHH-HHHhCCCce--ecChhhHhhcCCCEEEEecCchhHHHHH
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPA-VRQQLNAPF--FADLNDLCELHPDVVLLSTSILSTQSVL 105 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~-~a~~~g~~~--~~~~~~~~~~~aDvVIlavp~~~~~~vl 105 (335)
...++++|+|+|.+|.+++..|.+.|++|++++|+++..+ .+...+... ..+..+ + .++|+||.|||.... +.
T Consensus 330 ~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~-l-~~~DiVInatP~g~~--~~ 405 (477)
T PRK09310 330 LNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPE-L-HRIDIIINCLPPSVT--IP 405 (477)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcc-c-CCCCEEEEcCCCCCc--ch
Confidence 4567999999999999999999999999999999876543 333333221 122222 3 679999999998752 11
Q ss_pred hhccccccCCccEEEEcCCC
Q 044593 106 KSIPFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 106 ~~l~~~~l~~~~iVvd~~Sv 125 (335)
. .+. .+|+|+...
T Consensus 406 ~-----~l~--~~v~D~~Y~ 418 (477)
T PRK09310 406 K-----AFP--PCVVDINTL 418 (477)
T ss_pred h-----HHh--hhEEeccCC
Confidence 1 122 388898654
No 233
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.37 E-value=0.00086 Score=63.93 Aligned_cols=90 Identities=18% Similarity=0.235 Sum_probs=63.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceec---Ch--hhHhhcCCCEEEEecCchhHHH
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFA---DL--NDLCELHPDVVLLSTSILSTQS 103 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~---~~--~~~~~~~aDvVIlavp~~~~~~ 103 (335)
..+.+|+|+|+|-+|..-.+..+..|.+|+++|+++++.+.++++|....- +. .+.+.+.+|+||.+++...+..
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~~~~~~~ 244 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVGPATLEP 244 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCChhhHHH
Confidence 347899999999999888888888999999999999999999999875321 11 1111123899998888444455
Q ss_pred HHhhccccccCCccEEEEcC
Q 044593 104 VLKSIPFQRLKRSTLFVDVL 123 (335)
Q Consensus 104 vl~~l~~~~l~~~~iVvd~~ 123 (335)
.++.+ +++..++-++
T Consensus 245 ~l~~l-----~~~G~~v~vG 259 (339)
T COG1064 245 SLKAL-----RRGGTLVLVG 259 (339)
T ss_pred HHHHH-----hcCCEEEEEC
Confidence 55444 3444544444
No 234
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.36 E-value=0.00067 Score=64.66 Aligned_cols=89 Identities=19% Similarity=0.177 Sum_probs=67.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHc-CC-eEEEEcCCCCcHHH-H---HhC-C--CceecChhhHhhcCCCEEEEecCchh
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARH-HH-TLLVHSRSDHSPAV-R---QQL-N--APFFADLNDLCELHPDVVLLSTSILS 100 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~-G~-~V~~~dr~~~~~~~-a---~~~-g--~~~~~~~~~~~~~~aDvVIlavp~~~ 100 (335)
.-..++|||+|..+.....++..- +. +|.+|+|+++..+. + .+. + +....+.++++ ++||+|+.|||...
T Consensus 129 da~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av-~~aDiIvt~T~s~~ 207 (330)
T COG2423 129 DASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAV-EGADIVVTATPSTE 207 (330)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHh-hcCCEEEEecCCCC
Confidence 356899999999999999999874 33 89999999976542 2 222 3 24567778888 89999999999887
Q ss_pred HHHHHhhccccccCCccEEEEcCC
Q 044593 101 TQSVLKSIPFQRLKRSTLFVDVLS 124 (335)
Q Consensus 101 ~~~vl~~l~~~~l~~~~iVvd~~S 124 (335)
.+++ ...+++|+.|.-+++
T Consensus 208 --Pil~---~~~l~~G~hI~aiGa 226 (330)
T COG2423 208 --PVLK---AEWLKPGTHINAIGA 226 (330)
T ss_pred --Ceec---HhhcCCCcEEEecCC
Confidence 3332 245789999998886
No 235
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=97.36 E-value=0.0016 Score=58.96 Aligned_cols=89 Identities=13% Similarity=0.186 Sum_probs=62.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCC---eEEEEcCC----CCc--------HHHHHhCCCc-eecChhhHhhcCCCEE
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHHH---TLLVHSRS----DHS--------PAVRQQLNAP-FFADLNDLCELHPDVV 92 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G~---~V~~~dr~----~~~--------~~~a~~~g~~-~~~~~~~~~~~~aDvV 92 (335)
.+.+||.|+|+|.+|..++..|...|. +|+++||+ .+. .+.+++.+.. ...++.+.+ .++|+|
T Consensus 23 l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l-~~~dvl 101 (226)
T cd05311 23 IEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEAL-KGADVF 101 (226)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHH-hcCCEE
Confidence 456799999999999999999999996 59999998 332 2233433211 112554555 789999
Q ss_pred EEecCchhH-HHHHhhccccccCCccEEEEcC
Q 044593 93 LLSTSILST-QSVLKSIPFQRLKRSTLFVDVL 123 (335)
Q Consensus 93 Ilavp~~~~-~~vl~~l~~~~l~~~~iVvd~~ 123 (335)
|-++|.... .++++.+ .++.+|++++
T Consensus 102 IgaT~~G~~~~~~l~~m-----~~~~ivf~ls 128 (226)
T cd05311 102 IGVSRPGVVKKEMIKKM-----AKDPIVFALA 128 (226)
T ss_pred EeCCCCCCCCHHHHHhh-----CCCCEEEEeC
Confidence 999985543 3455444 3667888876
No 236
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=97.36 E-value=0.00046 Score=64.81 Aligned_cols=94 Identities=14% Similarity=0.177 Sum_probs=59.9
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCe-EEEEcCCC---CcH-HHHHhC---C--Cce----ecC---hhhHhhcCCCE
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHHHT-LLVHSRSD---HSP-AVRQQL---N--APF----FAD---LNDLCELHPDV 91 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~-V~~~dr~~---~~~-~~a~~~---g--~~~----~~~---~~~~~~~~aDv 91 (335)
.+.+++.|+|+|.+|.+++..|.+.|++ |++++|++ +.. +.+.+. + +.. ..+ ..+.+ ..+|+
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~-~~~Di 202 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEI-ASSDI 202 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhh-ccCCE
Confidence 3467899999999999999999999985 99999996 222 222221 1 111 111 12233 57899
Q ss_pred EEEecCchhHHHHHh-hc-cccccCCccEEEEcC
Q 044593 92 VLLSTSILSTQSVLK-SI-PFQRLKRSTLFVDVL 123 (335)
Q Consensus 92 VIlavp~~~~~~vl~-~l-~~~~l~~~~iVvd~~ 123 (335)
||.|||.......-. -+ ....++++.+|.|+.
T Consensus 203 lINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~v 236 (289)
T PRK12548 203 LVNATLVGMKPNDGETNIKDTSVFRKDLVVADTV 236 (289)
T ss_pred EEEeCCCCCCCCCCCCCCCcHHhcCCCCEEEEec
Confidence 999999775321000 01 012366788999985
No 237
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.35 E-value=0.001 Score=59.22 Aligned_cols=80 Identities=10% Similarity=0.065 Sum_probs=57.0
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCc-H-HHHHhCCCceec-Ch-hhHhhcCCCEEEEecCchhHHH
Q 044593 28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHS-P-AVRQQLNAPFFA-DL-NDLCELHPDVVLLSTSILSTQS 103 (335)
Q Consensus 28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~-~-~~a~~~g~~~~~-~~-~~~~~~~aDvVIlavp~~~~~~ 103 (335)
...+++|.|||.|.+|...+..|.+.|++|++++++... . +.+....+.... .. .+.+ .++|+||.||.......
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l-~~adlViaaT~d~elN~ 85 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDI-VDAFLVIAATNDPRVNE 85 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhc-CCceEEEEcCCCHHHHH
Confidence 356789999999999999999999999999999876532 2 323222232211 11 1223 68999999999998877
Q ss_pred HHhhc
Q 044593 104 VLKSI 108 (335)
Q Consensus 104 vl~~l 108 (335)
.+...
T Consensus 86 ~i~~~ 90 (202)
T PRK06718 86 QVKED 90 (202)
T ss_pred HHHHH
Confidence 76655
No 238
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=97.32 E-value=0.00028 Score=68.78 Aligned_cols=86 Identities=23% Similarity=0.305 Sum_probs=58.0
Q ss_pred EEEEcccHHHHHHHHHHHHcC-C-eEEEEcCCCCcHHHHHh--C--CCc----eecC---hhhHhhcCCCEEEEecCchh
Q 044593 34 IAVIGFGNFGQFLAKAFARHH-H-TLLVHSRSDHSPAVRQQ--L--NAP----FFAD---LNDLCELHPDVVLLSTSILS 100 (335)
Q Consensus 34 I~IIG~G~mG~siA~~L~~~G-~-~V~~~dr~~~~~~~a~~--~--g~~----~~~~---~~~~~~~~aDvVIlavp~~~ 100 (335)
|+|+|+|.+|+.++..|.+.+ + +|++.||+.+..+...+ . .+. ...+ +.+++ +++|+||.|+|+..
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~-~~~dvVin~~gp~~ 79 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELL-RGCDVVINCAGPFF 79 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHH-TTSSEEEE-SSGGG
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHH-hcCCEEEECCccch
Confidence 789999999999999999886 4 89999999877543432 2 221 1222 34556 79999999999886
Q ss_pred HHHHHhhccccccCCccEEEEcCC
Q 044593 101 TQSVLKSIPFQRLKRSTLFVDVLS 124 (335)
Q Consensus 101 ~~~vl~~l~~~~l~~~~iVvd~~S 124 (335)
...+++.. ++.|+-.+|++.
T Consensus 80 ~~~v~~~~----i~~g~~yvD~~~ 99 (386)
T PF03435_consen 80 GEPVARAC----IEAGVHYVDTSY 99 (386)
T ss_dssp HHHHHHHH----HHHT-EEEESS-
T ss_pred hHHHHHHH----HHhCCCeeccch
Confidence 66666554 346677888543
No 239
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=97.30 E-value=0.00048 Score=64.09 Aligned_cols=114 Identities=14% Similarity=0.182 Sum_probs=70.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcH-HHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHH---H
Q 044593 31 SLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSP-AVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSV---L 105 (335)
Q Consensus 31 ~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~-~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~v---l 105 (335)
..++.|+|+|..|.+++.+|.+.|. +|++++|+++.. +.+...+.....+.. . ..+|+||-|||....... .
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~~~~~--~-~~~dlvINaTp~Gm~~~~~~~~ 198 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWRPDLG--G-IEADILVNVTPIGMAGGPEADK 198 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcchhhcc--c-ccCCEEEECCccccCCCCcccc
Confidence 3589999999999999999999997 699999998654 334444432211111 2 468999999997643110 0
Q ss_pred hhccccccCCccEEEEcCC--CCchHHHHHHhhCCCCCceEeccccC
Q 044593 106 KSIPFQRLKRSTLFVDVLS--VKEFPRNLFLKYLPQDFDILCTHPMF 150 (335)
Q Consensus 106 ~~l~~~~l~~~~iVvd~~S--vK~~~~~~l~~~l~~~~~~v~~HPma 150 (335)
..+....++++.+|.|+.- -.+..++..++ .+...+.+..|.
T Consensus 199 ~pi~~~~l~~~~~v~D~vY~P~~T~ll~~A~~---~G~~~i~Gl~ML 242 (272)
T PRK12550 199 LAFPEAEIDAASVVFDVVALPAETPLIRYARA---RGKTVITGAEVI 242 (272)
T ss_pred CCCCHHHcCCCCEEEEeecCCccCHHHHHHHH---CcCeEeCCHHHH
Confidence 0121234677889999852 22333343332 344555444443
No 240
>PRK10206 putative oxidoreductase; Provisional
Probab=97.29 E-value=0.00068 Score=65.19 Aligned_cols=78 Identities=17% Similarity=0.172 Sum_probs=54.5
Q ss_pred CCeEEEEcccHHHHH-HHHHHHH--cCCeE-EEEcCCCCcHHHHHhCC-CceecChhhHhh-cCCCEEEEecCchhHHHH
Q 044593 31 SLKIAVIGFGNFGQF-LAKAFAR--HHHTL-LVHSRSDHSPAVRQQLN-APFFADLNDLCE-LHPDVVLLSTSILSTQSV 104 (335)
Q Consensus 31 ~~kI~IIG~G~mG~s-iA~~L~~--~G~~V-~~~dr~~~~~~~a~~~g-~~~~~~~~~~~~-~~aDvVIlavp~~~~~~v 104 (335)
+.||||||+|.++.. .+..+.. .+++| .++|++++..+.+.+.+ +..+++.++++. .+.|+|++|+|...-.++
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H~~~ 80 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFEY 80 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHHHHH
Confidence 358999999998763 3454533 25676 46899876555555555 456778888872 368999999999876665
Q ss_pred Hhhc
Q 044593 105 LKSI 108 (335)
Q Consensus 105 l~~l 108 (335)
....
T Consensus 81 ~~~a 84 (344)
T PRK10206 81 AKRA 84 (344)
T ss_pred HHHH
Confidence 5543
No 241
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=97.27 E-value=0.001 Score=63.81 Aligned_cols=90 Identities=17% Similarity=0.207 Sum_probs=57.2
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHHcCC---eEEEEcCCCCcHHHHHhCCC--cee-cChhhHhhcCCCEEEEecCchhHH
Q 044593 30 TSLKIAVIG-FGNFGQFLAKAFARHHH---TLLVHSRSDHSPAVRQQLNA--PFF-ADLNDLCELHPDVVLLSTSILSTQ 102 (335)
Q Consensus 30 ~~~kI~IIG-~G~mG~siA~~L~~~G~---~V~~~dr~~~~~~~a~~~g~--~~~-~~~~~~~~~~aDvVIlavp~~~~~ 102 (335)
+++||+|+| .|.+|.-+.+.|.+.+| ++..+......-+.....|. ... .+..+ . +++|++|+|+|.....
T Consensus 3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~~~l~~~~~~~~~-~-~~vD~vFla~p~~~s~ 80 (336)
T PRK05671 3 QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAGKNLRVREVDSFD-F-SQVQLAFFAAGAAVSR 80 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCCcceEEeeCChHH-h-cCCCEEEEcCCHHHHH
Confidence 458999999 59999999999998776 33333222111110111121 111 12223 3 6899999999987777
Q ss_pred HHHhhccccccCCccEEEEcCCC
Q 044593 103 SVLKSIPFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 103 ~vl~~l~~~~l~~~~iVvd~~Sv 125 (335)
.+...+ .+.|..|+|.++-
T Consensus 81 ~~v~~~----~~~G~~VIDlS~~ 99 (336)
T PRK05671 81 SFAEKA----RAAGCSVIDLSGA 99 (336)
T ss_pred HHHHHH----HHCCCeEEECchh
Confidence 766665 2468899999864
No 242
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=97.27 E-value=0.0027 Score=60.51 Aligned_cols=67 Identities=21% Similarity=0.189 Sum_probs=45.8
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHHcCC-------eEEEEcCCCCc--H-HHHHhC---------CCceecChhhHhhcCC
Q 044593 30 TSLKIAVIGF-GNFGQFLAKAFARHHH-------TLLVHSRSDHS--P-AVRQQL---------NAPFFADLNDLCELHP 89 (335)
Q Consensus 30 ~~~kI~IIG~-G~mG~siA~~L~~~G~-------~V~~~dr~~~~--~-~~a~~~---------g~~~~~~~~~~~~~~a 89 (335)
+..||+|||+ |.+|+++|..|...|. ++.++|+++.. . ..+.++ +.....+..+.+ ++|
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~-~da 80 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAF-KDV 80 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHh-CCC
Confidence 4579999998 9999999999998874 79999996521 2 122221 111222333444 799
Q ss_pred CEEEEecC
Q 044593 90 DVVLLSTS 97 (335)
Q Consensus 90 DvVIlavp 97 (335)
|+||++.-
T Consensus 81 DvVVitAG 88 (323)
T TIGR01759 81 DAALLVGA 88 (323)
T ss_pred CEEEEeCC
Confidence 99999764
No 243
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=97.26 E-value=0.00093 Score=64.28 Aligned_cols=89 Identities=17% Similarity=0.127 Sum_probs=59.4
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHHcCC---eEEEE--cCCCCcHHHHHhCCC--ceecChhhHhhcCCCEEEEecCchhH
Q 044593 30 TSLKIAVIG-FGNFGQFLAKAFARHHH---TLLVH--SRSDHSPAVRQQLNA--PFFADLNDLCELHPDVVLLSTSILST 101 (335)
Q Consensus 30 ~~~kI~IIG-~G~mG~siA~~L~~~G~---~V~~~--dr~~~~~~~a~~~g~--~~~~~~~~~~~~~aDvVIlavp~~~~ 101 (335)
..+||+||| .|..|.-+.+.|.+.+| ++..+ .++.... ....|. .......+.+ .++|+||+|+|....
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~--~~~~~~~~~v~~~~~~~~-~~~D~vf~a~p~~~s 82 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKK--VTFEGRDYTVEELTEDSF-DGVDIALFSAGGSIS 82 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCe--eeecCceeEEEeCCHHHH-cCCCEEEECCCcHHH
Confidence 467999999 69999999999998777 34333 3333211 111222 1111112334 689999999999988
Q ss_pred HHHHhhccccccCCccEEEEcCCC
Q 044593 102 QSVLKSIPFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 102 ~~vl~~l~~~~l~~~~iVvd~~Sv 125 (335)
.++...+. ..|+.|+|.++-
T Consensus 83 ~~~~~~~~----~~g~~VIDlS~~ 102 (344)
T PLN02383 83 KKFGPIAV----DKGAVVVDNSSA 102 (344)
T ss_pred HHHHHHHH----hCCCEEEECCch
Confidence 88887652 368899999864
No 244
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=97.25 E-value=0.00098 Score=64.99 Aligned_cols=90 Identities=18% Similarity=0.210 Sum_probs=61.0
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHHc-CCeEEEEcCCCCcHHHHHhCC-------CceecChh-hHhhcCCCEEEEecCch
Q 044593 30 TSLKIAVIG-FGNFGQFLAKAFARH-HHTLLVHSRSDHSPAVRQQLN-------APFFADLN-DLCELHPDVVLLSTSIL 99 (335)
Q Consensus 30 ~~~kI~IIG-~G~mG~siA~~L~~~-G~~V~~~dr~~~~~~~a~~~g-------~~~~~~~~-~~~~~~aDvVIlavp~~ 99 (335)
..+||+|+| .|.+|.-+.+.|.+. +++|..+.++...-+...... .....+.+ +.. +++|+||+|+|..
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~-~~~DvVf~Alp~~ 115 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADF-SDVDAVFCCLPHG 115 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHh-cCCCEEEEcCCHH
Confidence 567999999 599999999999988 568887765533221111111 11111222 113 6899999999998
Q ss_pred hHHHHHhhccccccCCccEEEEcCCC
Q 044593 100 STQSVLKSIPFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 100 ~~~~vl~~l~~~~l~~~~iVvd~~Sv 125 (335)
...++...+ ..++.|+|+++-
T Consensus 116 ~s~~i~~~~-----~~g~~VIDlSs~ 136 (381)
T PLN02968 116 TTQEIIKAL-----PKDLKIVDLSAD 136 (381)
T ss_pred HHHHHHHHH-----hCCCEEEEcCch
Confidence 877777765 256899999864
No 245
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=97.25 E-value=0.0011 Score=67.87 Aligned_cols=71 Identities=14% Similarity=0.088 Sum_probs=56.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce----ecChhhH---hhcCCCEEEEecCchhH
Q 044593 31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF----FADLNDL---CELHPDVVLLSTSILST 101 (335)
Q Consensus 31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~----~~~~~~~---~~~~aDvVIlavp~~~~ 101 (335)
..+|.|+|+|.+|..+++.|.+.|++|+++|.|++..+.+++.|... .++.+.+ -.+++|.++++++.+..
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~ 494 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYE 494 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHH
Confidence 47899999999999999999999999999999998888788887742 2232211 11689999999988653
No 246
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.25 E-value=0.00031 Score=66.69 Aligned_cols=94 Identities=20% Similarity=0.217 Sum_probs=56.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHc-CC-eEEEEcCCCCcHH----HHHhCCCc--eecChhhHhhcCCCEEEEecCchhH
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARH-HH-TLLVHSRSDHSPA----VRQQLNAP--FFADLNDLCELHPDVVLLSTSILST 101 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~-G~-~V~~~dr~~~~~~----~a~~~g~~--~~~~~~~~~~~~aDvVIlavp~~~~ 101 (335)
...+++|||+|..|.+-+.++... +. +|.+|+|+++..+ ...+.++. ...+.++++ .+||+|+.|||....
T Consensus 127 ~~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av-~~aDii~taT~s~~~ 205 (313)
T PF02423_consen 127 DARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAV-RGADIIVTATPSTTP 205 (313)
T ss_dssp T--EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHH-TTSSEEEE----SSE
T ss_pred CCceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhc-ccCCEEEEccCCCCC
Confidence 456899999999999999998763 43 8999999986542 22333544 456788888 899999999997762
Q ss_pred HHHHhhccccccCCccEEEEcCCCCc
Q 044593 102 QSVLKSIPFQRLKRSTLFVDVLSVKE 127 (335)
Q Consensus 102 ~~vl~~l~~~~l~~~~iVvd~~SvK~ 127 (335)
..++. ...+++|+.|..+++-+.
T Consensus 206 ~P~~~---~~~l~~g~hi~~iGs~~~ 228 (313)
T PF02423_consen 206 APVFD---AEWLKPGTHINAIGSYTP 228 (313)
T ss_dssp EESB----GGGS-TT-EEEE-S-SST
T ss_pred Ccccc---HHHcCCCcEEEEecCCCC
Confidence 12222 245789999999987543
No 247
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.24 E-value=0.0011 Score=62.93 Aligned_cols=89 Identities=20% Similarity=0.310 Sum_probs=56.7
Q ss_pred CeEEEEcc-cHHHHHHHHHHHHcCC--eEEEEcCCCCcHHHHHhC--C---Cce--e-cC--hhhHhhcCCCEEEEecCc
Q 044593 32 LKIAVIGF-GNFGQFLAKAFARHHH--TLLVHSRSDHSPAVRQQL--N---APF--F-AD--LNDLCELHPDVVLLSTSI 98 (335)
Q Consensus 32 ~kI~IIG~-G~mG~siA~~L~~~G~--~V~~~dr~~~~~~~a~~~--g---~~~--~-~~--~~~~~~~~aDvVIlavp~ 98 (335)
|||+|||+ |.+|+++|..|...|. ++.++|++ .....+.++ + ... . .+ +.+.+ +++|+||++.-.
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~-~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~-~daDivvitaG~ 78 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV-NTPGVAADLSHINTPAKVTGYLGPEELKKAL-KGADVVVIPAGV 78 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC-ccceeehHhHhCCCcceEEEecCCCchHHhc-CCCCEEEEeCCC
Confidence 69999999 9999999999998885 89999998 322112111 1 111 1 22 23444 899999997643
Q ss_pred hh----------------HHHHHhhccccccCCccEEEEcCC
Q 044593 99 LS----------------TQSVLKSIPFQRLKRSTLFVDVLS 124 (335)
Q Consensus 99 ~~----------------~~~vl~~l~~~~l~~~~iVvd~~S 124 (335)
.. +.++.+.+. + ..++++|+.+++
T Consensus 79 ~~k~g~tR~dll~~N~~i~~~i~~~i~-~-~~p~a~vivvtN 118 (310)
T cd01337 79 PRKPGMTRDDLFNINAGIVRDLATAVA-K-ACPKALILIISN 118 (310)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHH-H-hCCCeEEEEccC
Confidence 11 233444443 2 356778887764
No 248
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.24 E-value=0.003 Score=56.81 Aligned_cols=91 Identities=19% Similarity=0.123 Sum_probs=59.3
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCe-EEEEcCCC----------CcHHHHHhCC-Ccee-----cChhhHhhcCCC
Q 044593 28 KSTSLKIAVIGFGNFGQFLAKAFARHHHT-LLVHSRSD----------HSPAVRQQLN-APFF-----ADLNDLCELHPD 90 (335)
Q Consensus 28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~-V~~~dr~~----------~~~~~a~~~g-~~~~-----~~~~~~~~~~aD 90 (335)
..++++|+|.|+|++|+.+|+.|.+.|.. |.+.|.+. +..+...+.+ +... .+.+++...+||
T Consensus 20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D 99 (217)
T cd05211 20 SLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDVD 99 (217)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceecccc
Confidence 45689999999999999999999999885 56678876 4444333332 2211 122333325799
Q ss_pred EEEEecCchhH-HHHHhhccccccCCccEEEEcCC
Q 044593 91 VVLLSTSILST-QSVLKSIPFQRLKRSTLFVDVLS 124 (335)
Q Consensus 91 vVIlavp~~~~-~~vl~~l~~~~l~~~~iVvd~~S 124 (335)
++|-|.+.+.+ .+....+. -.+|+..++
T Consensus 100 VlipaA~~~~i~~~~a~~l~------a~~V~e~AN 128 (217)
T cd05211 100 IFAPCALGNVIDLENAKKLK------AKVVAEGAN 128 (217)
T ss_pred EEeeccccCccChhhHhhcC------ccEEEeCCC
Confidence 99999988764 34444442 236666554
No 249
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=97.22 E-value=0.00039 Score=54.20 Aligned_cols=77 Identities=14% Similarity=0.246 Sum_probs=56.2
Q ss_pred CCeEEEEcccHHHHHHHHHHH-HcCCeE-EEEcCCCCcHHHHHhCCCceecChhhHhhcC--CCEEEEecCchhHHHHHh
Q 044593 31 SLKIAVIGFGNFGQFLAKAFA-RHHHTL-LVHSRSDHSPAVRQQLNAPFFADLNDLCELH--PDVVLLSTSILSTQSVLK 106 (335)
Q Consensus 31 ~~kI~IIG~G~mG~siA~~L~-~~G~~V-~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~--aDvVIlavp~~~~~~vl~ 106 (335)
..+|.|+|+|.+|..++..+. ..|+.+ .++|.+++... -.-.|+....+.+++. +. .|+.|+|+|.....++..
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G-~~i~gipV~~~~~~l~-~~~~i~iaii~VP~~~a~~~~~ 80 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIG-KEIGGIPVYGSMDELE-EFIEIDIAIITVPAEAAQEVAD 80 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTT-SEETTEEEESSHHHHH-HHCTTSEEEEES-HHHHHHHHH
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccC-cEECCEEeeccHHHhh-hhhCCCEEEEEcCHHHHHHHHH
Confidence 458999999999999985554 457754 67788887442 1123666776777775 44 999999999999888887
Q ss_pred hcc
Q 044593 107 SIP 109 (335)
Q Consensus 107 ~l~ 109 (335)
++.
T Consensus 81 ~~~ 83 (96)
T PF02629_consen 81 ELV 83 (96)
T ss_dssp HHH
T ss_pred HHH
Confidence 763
No 250
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=97.22 E-value=0.00053 Score=64.17 Aligned_cols=105 Identities=15% Similarity=0.114 Sum_probs=65.3
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHH-HHHhC----CC--ceecCh---hhHhhcCCCEEEEecC
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPA-VRQQL----NA--PFFADL---NDLCELHPDVVLLSTS 97 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~-~a~~~----g~--~~~~~~---~~~~~~~aDvVIlavp 97 (335)
...+++.|+|+|-.|.+++.+|.+.|. +|++++|+.+..+ .+... +. ....+. .+.. ..+|+||-|||
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~-~~~divINaTp 203 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVI-AAADGVVNATP 203 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHH-hhcCEEEEcCC
Confidence 346789999999999999999999997 7999999976543 33322 11 011121 2233 57999999999
Q ss_pred chhHHHHHhhccccccCCccEEEEcC--CCCchHHHHHH
Q 044593 98 ILSTQSVLKSIPFQRLKRSTLFVDVL--SVKEFPRNLFL 134 (335)
Q Consensus 98 ~~~~~~vl~~l~~~~l~~~~iVvd~~--SvK~~~~~~l~ 134 (335)
.......-..+....+.++.+|.|+. ...+..++..+
T Consensus 204 ~Gm~~~~~~~~~~~~l~~~~~v~D~vY~P~~T~ll~~A~ 242 (283)
T PRK14027 204 MGMPAHPGTAFDVSCLTKDHWVGDVVYMPIETELLKAAR 242 (283)
T ss_pred CCCCCCCCCCCCHHHcCCCcEEEEcccCCCCCHHHHHHH
Confidence 76421100001112356778999984 23334444444
No 251
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=97.20 E-value=0.0012 Score=68.53 Aligned_cols=72 Identities=14% Similarity=0.245 Sum_probs=57.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce----ecChhhHh---hcCCCEEEEecCchhHH
Q 044593 31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF----FADLNDLC---ELHPDVVLLSTSILSTQ 102 (335)
Q Consensus 31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~----~~~~~~~~---~~~aDvVIlavp~~~~~ 102 (335)
.++|.|+|+|.+|..+++.|.+.|++++++|.|++..+.+++.|... .++.+-+- .+++|.+|++++.+...
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n 478 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTS 478 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHH
Confidence 57899999999999999999999999999999999888788888753 22332221 15899999999987643
No 252
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.19 E-value=0.0014 Score=62.43 Aligned_cols=66 Identities=23% Similarity=0.188 Sum_probs=45.0
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHHcCC-------eEEEEcCCCCc--HH-HHHhC---------CCceecChhhHhhcCCC
Q 044593 31 SLKIAVIGF-GNFGQFLAKAFARHHH-------TLLVHSRSDHS--PA-VRQQL---------NAPFFADLNDLCELHPD 90 (335)
Q Consensus 31 ~~kI~IIG~-G~mG~siA~~L~~~G~-------~V~~~dr~~~~--~~-~a~~~---------g~~~~~~~~~~~~~~aD 90 (335)
.+||+|||+ |.+|+++|..|...|. ++.++|+++.. .+ .+.++ .+....+..+.+ ++||
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~-~daD 80 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAF-KDAD 80 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHh-CCCC
Confidence 569999998 9999999999998775 79999996432 11 11111 112223333444 7999
Q ss_pred EEEEecC
Q 044593 91 VVLLSTS 97 (335)
Q Consensus 91 vVIlavp 97 (335)
+||++.-
T Consensus 81 ivvitaG 87 (322)
T cd01338 81 WALLVGA 87 (322)
T ss_pred EEEEeCC
Confidence 9999764
No 253
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=97.19 E-value=0.0012 Score=58.62 Aligned_cols=36 Identities=19% Similarity=0.249 Sum_probs=32.5
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCC
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSD 64 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~ 64 (335)
....||.|||+|.+|+.++..|...|. +++++|.+.
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 456799999999999999999999997 899999883
No 254
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.19 E-value=0.0019 Score=55.08 Aligned_cols=78 Identities=13% Similarity=0.094 Sum_probs=56.3
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCC-Ccee-cC--hhhHhhcCCCEEEEecCchhHHH
Q 044593 28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLN-APFF-AD--LNDLCELHPDVVLLSTSILSTQS 103 (335)
Q Consensus 28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g-~~~~-~~--~~~~~~~~aDvVIlavp~~~~~~ 103 (335)
+.++++|.|||.|.+|...++.|.+.|++|++++++ ..+...+++ +... .. ..+ + .++|+||.||..+.+..
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~--~~~~l~~l~~i~~~~~~~~~~d-l-~~a~lViaaT~d~e~N~ 85 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE--ICKEMKELPYITWKQKTFSNDD-I-KDAHLIYAATNQHAVNM 85 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc--cCHHHHhccCcEEEecccChhc-C-CCceEEEECCCCHHHHH
Confidence 456889999999999999999999999999999644 222233333 2211 11 122 3 68999999999998877
Q ss_pred HHhhcc
Q 044593 104 VLKSIP 109 (335)
Q Consensus 104 vl~~l~ 109 (335)
.+....
T Consensus 86 ~i~~~a 91 (157)
T PRK06719 86 MVKQAA 91 (157)
T ss_pred HHHHHH
Confidence 776653
No 255
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=97.18 E-value=0.0015 Score=61.90 Aligned_cols=80 Identities=20% Similarity=0.222 Sum_probs=57.5
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHHcCC-eEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhhc
Q 044593 31 SLKIAVIG-FGNFGQFLAKAFARHHH-TLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSI 108 (335)
Q Consensus 31 ~~kI~IIG-~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~l 108 (335)
++||+||| .|..|.-+.+.|.++.. ++.....+... . . .+.++.. .++|++|+|+|.....++..++
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~-~------~---~~~~~~~-~~~DvvFlalp~~~s~~~~~~~ 70 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK-D------A---AARRELL-NAADVAILCLPDDAAREAVALI 70 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC-c------c---cCchhhh-cCCCEEEECCCHHHHHHHHHHH
Confidence 67999999 69999999999988764 55444333221 1 1 1223344 6899999999999888888776
Q ss_pred cccccCCccEEEEcCCC
Q 044593 109 PFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 109 ~~~~l~~~~iVvd~~Sv 125 (335)
. +.|+.|+|.++-
T Consensus 71 ~----~~g~~VIDlSad 83 (313)
T PRK11863 71 D----NPATRVIDASTA 83 (313)
T ss_pred H----hCCCEEEECChh
Confidence 3 368899999853
No 256
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.16 E-value=0.0013 Score=61.40 Aligned_cols=75 Identities=17% Similarity=0.221 Sum_probs=58.2
Q ss_pred CCCCeEEEEcccH-HHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593 29 STSLKIAVIGFGN-FGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS 107 (335)
Q Consensus 29 ~~~~kI~IIG~G~-mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~ 107 (335)
..+++|.|||-|. +|..++..|.+.|..|+++.+.. .++.+.+ +++|+||.|++-... +.
T Consensus 157 l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T--------------~~l~~~~-~~ADIvi~avG~p~~---v~- 217 (285)
T PRK10792 157 TYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT--------------KNLRHHV-RNADLLVVAVGKPGF---IP- 217 (285)
T ss_pred CCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC--------------CCHHHHH-hhCCEEEEcCCCccc---cc-
Confidence 3578999999776 99999999999999999987642 2345566 799999999954432 11
Q ss_pred ccccccCCccEEEEcCC
Q 044593 108 IPFQRLKRSTLFVDVLS 124 (335)
Q Consensus 108 l~~~~l~~~~iVvd~~S 124 (335)
...+++|++|+|++-
T Consensus 218 --~~~vk~gavVIDvGi 232 (285)
T PRK10792 218 --GEWIKPGAIVIDVGI 232 (285)
T ss_pred --HHHcCCCcEEEEccc
Confidence 245789999999984
No 257
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=97.16 E-value=0.0012 Score=61.99 Aligned_cols=93 Identities=16% Similarity=0.176 Sum_probs=59.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCC---c-HHHHHhCC----Cc-eecCh------hhHhhcCCCEEE
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDH---S-PAVRQQLN----AP-FFADL------NDLCELHPDVVL 93 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~---~-~~~a~~~g----~~-~~~~~------~~~~~~~aDvVI 93 (335)
..+++.|+|+|..+.+++..|...|. +|++++|+++ . .+++...+ .. ...++ .+.. .++|+||
T Consensus 123 ~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~-~~aDivI 201 (288)
T PRK12749 123 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEAL-ASADILT 201 (288)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhc-ccCCEEE
Confidence 45789999999999999999999886 8999999964 2 22333222 11 11122 1223 5789999
Q ss_pred EecCchhHHHHHhhc--cccccCCccEEEEcC
Q 044593 94 LSTSILSTQSVLKSI--PFQRLKRSTLFVDVL 123 (335)
Q Consensus 94 lavp~~~~~~vl~~l--~~~~l~~~~iVvd~~ 123 (335)
.|||.......-..+ ....++++.+|.|+.
T Consensus 202 NaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~v 233 (288)
T PRK12749 202 NGTKVGMKPLENESLVNDISLLHPGLLVTECV 233 (288)
T ss_pred ECCCCCCCCCCCCCCCCcHHHCCCCCEEEEec
Confidence 999986532110101 012356788999985
No 258
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.15 E-value=0.0012 Score=62.55 Aligned_cols=63 Identities=17% Similarity=0.354 Sum_probs=45.3
Q ss_pred eEEEEcccHHHHHHHHHHHHcCC--eEEEEcCCCCcHH-HHHhC----------CCce-ecChhhHhhcCCCEEEEecC
Q 044593 33 KIAVIGFGNFGQFLAKAFARHHH--TLLVHSRSDHSPA-VRQQL----------NAPF-FADLNDLCELHPDVVLLSTS 97 (335)
Q Consensus 33 kI~IIG~G~mG~siA~~L~~~G~--~V~~~dr~~~~~~-~a~~~----------g~~~-~~~~~~~~~~~aDvVIlavp 97 (335)
||+|||+|.+|+++|..|...+. ++.++|++++..+ .+.++ .+.. ..+.++ + ++||+||++.-
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~-~-~~aDivvitaG 77 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDD-C-ADADIIVITAG 77 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHH-h-CCCCEEEECCC
Confidence 79999999999999999998885 7999999876432 22221 1112 234444 4 79999999763
No 259
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=97.13 E-value=0.00087 Score=62.72 Aligned_cols=70 Identities=13% Similarity=0.025 Sum_probs=51.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcH-HHHHhCCC----ceec---ChhhHhhcCCCEEEEecCchh
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSP-AVRQQLNA----PFFA---DLNDLCELHPDVVLLSTSILS 100 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~-~~a~~~g~----~~~~---~~~~~~~~~aDvVIlavp~~~ 100 (335)
..+++.|||+|.+|.+++.+|.+.|. +|++++|+.+.. +.+...+. .... +..+.. .++|+||-|||...
T Consensus 124 ~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~-~~~DiVInaTp~g~ 202 (282)
T TIGR01809 124 AGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIE-KAAEVLVSTVPADV 202 (282)
T ss_pred CCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcc-cCCCEEEECCCCCC
Confidence 46789999999999999999999997 799999997654 33333221 1111 222333 67999999999764
No 260
>PRK05442 malate dehydrogenase; Provisional
Probab=97.12 E-value=0.0022 Score=61.20 Aligned_cols=67 Identities=24% Similarity=0.204 Sum_probs=44.9
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHHcCC-------eEEEEcCCCCc--HH-HHHhC---------CCceecChhhHhhcCC
Q 044593 30 TSLKIAVIGF-GNFGQFLAKAFARHHH-------TLLVHSRSDHS--PA-VRQQL---------NAPFFADLNDLCELHP 89 (335)
Q Consensus 30 ~~~kI~IIG~-G~mG~siA~~L~~~G~-------~V~~~dr~~~~--~~-~a~~~---------g~~~~~~~~~~~~~~a 89 (335)
+.+||+|||+ |.+|+++|..|...|. ++.++|+++.. .+ .+.++ ......+..+.+ ++|
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~-~da 81 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAF-KDA 81 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHh-CCC
Confidence 4679999998 9999999999887663 79999996431 11 11111 122233333445 899
Q ss_pred CEEEEecC
Q 044593 90 DVVLLSTS 97 (335)
Q Consensus 90 DvVIlavp 97 (335)
|+||++.-
T Consensus 82 DiVVitaG 89 (326)
T PRK05442 82 DVALLVGA 89 (326)
T ss_pred CEEEEeCC
Confidence 99999764
No 261
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.10 E-value=0.0012 Score=61.62 Aligned_cols=76 Identities=18% Similarity=0.180 Sum_probs=58.8
Q ss_pred CCCCeEEEEccc-HHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593 29 STSLKIAVIGFG-NFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS 107 (335)
Q Consensus 29 ~~~~kI~IIG~G-~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~ 107 (335)
..+++|.|||-| .+|..+|..|.+.|..|+++.... .++.+.+ ++||+||.|++.... +.
T Consensus 155 l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t--------------~~l~~~~-~~ADIvV~AvG~p~~---i~- 215 (285)
T PRK14191 155 IKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT--------------KDLSFYT-QNADIVCVGVGKPDL---IK- 215 (285)
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc--------------HHHHHHH-HhCCEEEEecCCCCc---CC-
Confidence 357899999987 999999999999999999885432 1234556 799999999975543 22
Q ss_pred ccccccCCccEEEEcCCC
Q 044593 108 IPFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 108 l~~~~l~~~~iVvd~~Sv 125 (335)
...+++|++|+|++..
T Consensus 216 --~~~vk~GavVIDvGi~ 231 (285)
T PRK14191 216 --ASMVKKGAVVVDIGIN 231 (285)
T ss_pred --HHHcCCCcEEEEeecc
Confidence 2457899999999843
No 262
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=97.10 E-value=0.00067 Score=58.83 Aligned_cols=84 Identities=12% Similarity=0.197 Sum_probs=57.1
Q ss_pred cccCCCCCeEEEEcccHHHHHHHHHH--HHcCCeE-EEEcCCCCcHH-HHHhCCCceecChhhHhh-cCCCEEEEecCch
Q 044593 25 QYVKSTSLKIAVIGFGNFGQFLAKAF--ARHHHTL-LVHSRSDHSPA-VRQQLNAPFFADLNDLCE-LHPDVVLLSTSIL 99 (335)
Q Consensus 25 ~~~~~~~~kI~IIG~G~mG~siA~~L--~~~G~~V-~~~dr~~~~~~-~a~~~g~~~~~~~~~~~~-~~aDvVIlavp~~ 99 (335)
.+...++-++.|||+|++|.+++.+- .++|+++ .+||.+++..- .....-+...++++..+. .+.|+.|+|||..
T Consensus 78 ~Lg~~~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa~ 157 (211)
T COG2344 78 LLGQDKTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPAE 157 (211)
T ss_pred HhCCCcceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccHH
Confidence 44556778999999999999998543 3567765 67899987442 111111112234444441 3799999999999
Q ss_pred hHHHHHhhc
Q 044593 100 STQSVLKSI 108 (335)
Q Consensus 100 ~~~~vl~~l 108 (335)
...++.+.+
T Consensus 158 ~AQ~vad~L 166 (211)
T COG2344 158 HAQEVADRL 166 (211)
T ss_pred HHHHHHHHH
Confidence 888888777
No 263
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=97.09 E-value=0.0023 Score=63.52 Aligned_cols=94 Identities=17% Similarity=0.156 Sum_probs=63.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhC--CCce----ecChhhH---hhcCCCEEEEecCchh
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQL--NAPF----FADLNDL---CELHPDVVLLSTSILS 100 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~--g~~~----~~~~~~~---~~~~aDvVIlavp~~~ 100 (335)
..++|.|+|+|.+|..+++.|.+.|++|+++|++++..+.+.+. ++.. .++...+ ...++|.||++++.+.
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~~ 309 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDDE 309 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCcH
Confidence 46899999999999999999999999999999999876655543 3321 1222222 1168999999998775
Q ss_pred HHHHHhhccccccCCccEEEEcCC
Q 044593 101 TQSVLKSIPFQRLKRSTLFVDVLS 124 (335)
Q Consensus 101 ~~~vl~~l~~~~l~~~~iVvd~~S 124 (335)
..-....+. ..+....+|+-+.+
T Consensus 310 ~n~~~~~~~-~~~~~~~ii~~~~~ 332 (453)
T PRK09496 310 ANILSSLLA-KRLGAKKVIALVNR 332 (453)
T ss_pred HHHHHHHHH-HHhCCCeEEEEECC
Confidence 443333332 22344456655543
No 264
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.08 E-value=0.0019 Score=57.38 Aligned_cols=35 Identities=23% Similarity=0.351 Sum_probs=32.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCC
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRS 63 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~ 63 (335)
.+..||+|||+|.+|+.+|..|...|. +++++|.+
T Consensus 19 L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 19 LEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 456799999999999999999999998 79999998
No 265
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=97.08 E-value=0.0016 Score=61.80 Aligned_cols=92 Identities=20% Similarity=0.243 Sum_probs=60.2
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHHcCC-eEEEEcCCC-CcHHHHHh----CCCc---e-ecChhhHhhcCCCEEEEecCc
Q 044593 30 TSLKIAVIG-FGNFGQFLAKAFARHHH-TLLVHSRSD-HSPAVRQQ----LNAP---F-FADLNDLCELHPDVVLLSTSI 98 (335)
Q Consensus 30 ~~~kI~IIG-~G~mG~siA~~L~~~G~-~V~~~dr~~-~~~~~a~~----~g~~---~-~~~~~~~~~~~aDvVIlavp~ 98 (335)
+++||+||| .|--|.-+.+.|..... ++..+..+. ........ .|.. . .-+.+++...+||+||+|+|.
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFlalPh 80 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLALPH 80 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEEecCc
Confidence 368999999 69999999999988753 766655443 21111111 1221 1 112333321569999999999
Q ss_pred hhHHHHHhhccccccCCccEEEEcCCC
Q 044593 99 LSTQSVLKSIPFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 99 ~~~~~vl~~l~~~~l~~~~iVvd~~Sv 125 (335)
....++..++ +.++..|+|+|.-
T Consensus 81 g~s~~~v~~l----~~~g~~VIDLSad 103 (349)
T COG0002 81 GVSAELVPEL----LEAGCKVIDLSAD 103 (349)
T ss_pred hhHHHHHHHH----HhCCCeEEECCcc
Confidence 9988888776 3356779999753
No 266
>PRK14982 acyl-ACP reductase; Provisional
Probab=97.07 E-value=0.0013 Score=63.03 Aligned_cols=90 Identities=19% Similarity=0.287 Sum_probs=61.7
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHHc-C-CeEEEEcCCCCcHH-HHHhCCCceecChhhHhhcCCCEEEEecCchhHHHH
Q 044593 29 STSLKIAVIGF-GNFGQFLAKAFARH-H-HTLLVHSRSDHSPA-VRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSV 104 (335)
Q Consensus 29 ~~~~kI~IIG~-G~mG~siA~~L~~~-G-~~V~~~dr~~~~~~-~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~v 104 (335)
...++|.|+|+ |.||+.+++.|... | .++++++|+++... .+.+.+.....++.+.+ .++|+||.++...... +
T Consensus 153 l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l-~~aDiVv~~ts~~~~~-~ 230 (340)
T PRK14982 153 LSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEAL-PEADIVVWVASMPKGV-E 230 (340)
T ss_pred cCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHH-ccCCEEEECCcCCcCC-c
Confidence 45689999997 99999999999854 5 58999999876543 33333322223455666 7899999988653311 0
Q ss_pred HhhccccccCCccEEEEcC
Q 044593 105 LKSIPFQRLKRSTLFVDVL 123 (335)
Q Consensus 105 l~~l~~~~l~~~~iVvd~~ 123 (335)
+. ...++++.+++|++
T Consensus 231 I~---~~~l~~~~~viDiA 246 (340)
T PRK14982 231 ID---PETLKKPCLMIDGG 246 (340)
T ss_pred CC---HHHhCCCeEEEEec
Confidence 11 12356889999996
No 267
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=97.07 E-value=0.00063 Score=60.94 Aligned_cols=78 Identities=14% Similarity=0.282 Sum_probs=51.2
Q ss_pred CCCeEEEEcccHHHHHHHHHH--HHcCCeEEE-EcCCCCcHHHHHhCCCc--eecChhhHhh-cCCCEEEEecCchhHHH
Q 044593 30 TSLKIAVIGFGNFGQFLAKAF--ARHHHTLLV-HSRSDHSPAVRQQLNAP--FFADLNDLCE-LHPDVVLLSTSILSTQS 103 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L--~~~G~~V~~-~dr~~~~~~~a~~~g~~--~~~~~~~~~~-~~aDvVIlavp~~~~~~ 103 (335)
...+|+|||+|.+|..++..+ ...|+++++ +|++++...... .|+. ...++.+++. .++|.|++|+|.....+
T Consensus 83 ~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i-~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~ 161 (213)
T PRK05472 83 RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKI-GGIPVYHIDELEEVVKENDIEIGILTVPAEAAQE 161 (213)
T ss_pred CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEe-CCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHH
Confidence 457899999999999999864 345788764 688764332111 1221 2234455541 35999999999887766
Q ss_pred HHhhc
Q 044593 104 VLKSI 108 (335)
Q Consensus 104 vl~~l 108 (335)
+...+
T Consensus 162 i~~~l 166 (213)
T PRK05472 162 VADRL 166 (213)
T ss_pred HHHHH
Confidence 55544
No 268
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.07 E-value=0.0043 Score=56.22 Aligned_cols=92 Identities=15% Similarity=0.187 Sum_probs=58.2
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCeEE-EEcC----------CCCcHH-HHHhCCC-ce-----ecChhhHhhcCC
Q 044593 28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLL-VHSR----------SDHSPA-VRQQLNA-PF-----FADLNDLCELHP 89 (335)
Q Consensus 28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~-~~dr----------~~~~~~-~a~~~g~-~~-----~~~~~~~~~~~a 89 (335)
..+.++|+|.|+|.+|+.+++.|.+.|.+|+ +.|. |.+.+. ...+.|- .. ..+.+++...+|
T Consensus 28 ~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~~~~ 107 (227)
T cd01076 28 GLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLELDC 107 (227)
T ss_pred CccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCccceeecc
Confidence 4578999999999999999999999999987 5566 322222 1222231 10 112233332579
Q ss_pred CEEEEecCchhH-HHHHhhccccccCCccEEEEcCCC
Q 044593 90 DVVLLSTSILST-QSVLKSIPFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 90 DvVIlavp~~~~-~~vl~~l~~~~l~~~~iVvd~~Sv 125 (335)
|++|-|.+...+ .+.+..+. -.+|+..++.
T Consensus 108 Dvlip~a~~~~i~~~~~~~l~------a~~I~egAN~ 138 (227)
T cd01076 108 DILIPAALENQITADNADRIK------AKIIVEAANG 138 (227)
T ss_pred cEEEecCccCccCHHHHhhce------eeEEEeCCCC
Confidence 999999987764 45555552 1356655443
No 269
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.06 E-value=0.0022 Score=59.88 Aligned_cols=75 Identities=20% Similarity=0.325 Sum_probs=58.5
Q ss_pred CCCeEEEEcccH-HHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhhc
Q 044593 30 TSLKIAVIGFGN-FGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSI 108 (335)
Q Consensus 30 ~~~kI~IIG~G~-mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~l 108 (335)
.++++.|||-|. +|.-++..|.+.|..|+++.... .++.+.. ++||+||.|+.-.. .+.
T Consensus 163 ~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T--------------~~l~~~~-~~ADIvv~AvG~p~---~i~-- 222 (287)
T PRK14176 163 EGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT--------------DDLKKYT-LDADILVVATGVKH---LIK-- 222 (287)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC--------------CCHHHHH-hhCCEEEEccCCcc---ccC--
Confidence 578999999776 99999999999999999987432 2345556 78999999876443 221
Q ss_pred cccccCCccEEEEcCCC
Q 044593 109 PFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 109 ~~~~l~~~~iVvd~~Sv 125 (335)
...+++|++|+|++..
T Consensus 223 -~~~vk~gavVIDvGin 238 (287)
T PRK14176 223 -ADMVKEGAVIFDVGIT 238 (287)
T ss_pred -HHHcCCCcEEEEeccc
Confidence 2458899999999864
No 270
>PRK06199 ornithine cyclodeaminase; Validated
Probab=97.06 E-value=0.0015 Score=63.74 Aligned_cols=92 Identities=16% Similarity=0.225 Sum_probs=64.9
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHc--CC-eEEEEcCCCCcHH-HHH----hC-C---CceecChhhHhhcCCCEEEEec
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARH--HH-TLLVHSRSDHSPA-VRQ----QL-N---APFFADLNDLCELHPDVVLLST 96 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~--G~-~V~~~dr~~~~~~-~a~----~~-g---~~~~~~~~~~~~~~aDvVIlav 96 (335)
....+++|||+|.+|.+...++... .. +|.+|+|+++..+ .+. .. | +....+.++++ .+||+|+.||
T Consensus 153 ~da~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav-~~ADIVvtaT 231 (379)
T PRK06199 153 KDSKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVV-RGSDIVTYCN 231 (379)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHH-cCCCEEEEcc
Confidence 3457899999999999999999873 23 8999999987543 222 22 3 33457788888 8999999999
Q ss_pred Cchh----HHHHHhhccccccCCccEEEEcCC
Q 044593 97 SILS----TQSVLKSIPFQRLKRSTLFVDVLS 124 (335)
Q Consensus 97 p~~~----~~~vl~~l~~~~l~~~~iVvd~~S 124 (335)
+... ...++.. ..+++|+.|.-+++
T Consensus 232 ~s~~~~~s~~Pv~~~---~~lkpG~hv~~ig~ 260 (379)
T PRK06199 232 SGETGDPSTYPYVKR---EWVKPGAFLLMPAA 260 (379)
T ss_pred CCCCCCCCcCcEecH---HHcCCCcEEecCCc
Confidence 7532 1133321 34678988876665
No 271
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=97.04 E-value=0.0044 Score=61.78 Aligned_cols=85 Identities=13% Similarity=0.092 Sum_probs=66.4
Q ss_pred CCCeEEEEcc----cHHHHHHHHHHHHcCC--eEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHH
Q 044593 30 TSLKIAVIGF----GNFGQFLAKAFARHHH--TLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQS 103 (335)
Q Consensus 30 ~~~kI~IIG~----G~mG~siA~~L~~~G~--~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~ 103 (335)
...+|+|||. |.+|..+.+.|.+.|| +|+.+++..... .|+..+.++.++- ...|++|+++|...+.+
T Consensus 6 ~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i-----~G~~~~~sl~~lp-~~~Dlavi~vp~~~~~~ 79 (447)
T TIGR02717 6 NPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEI-----LGVKAYPSVLEIP-DPVDLAVIVVPAKYVPQ 79 (447)
T ss_pred CCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCcc-----CCccccCCHHHCC-CCCCEEEEecCHHHHHH
Confidence 4578999998 8899999999999998 677666654322 3777888888886 67899999999999999
Q ss_pred HHhhccccccCCccEEEEc
Q 044593 104 VLKSIPFQRLKRSTLFVDV 122 (335)
Q Consensus 104 vl~~l~~~~l~~~~iVvd~ 122 (335)
+++++.. ..-+.+|+-.
T Consensus 80 ~l~e~~~--~gv~~~vi~s 96 (447)
T TIGR02717 80 VVEECGE--KGVKGAVVIT 96 (447)
T ss_pred HHHHHHh--cCCCEEEEEC
Confidence 9998842 3344555533
No 272
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=97.03 E-value=0.0022 Score=61.57 Aligned_cols=36 Identities=22% Similarity=0.325 Sum_probs=32.6
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCC
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSD 64 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~ 64 (335)
.+..+|.|||+|.+|+.+|..|...|+ +++++|++.
T Consensus 22 L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 22 IREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 356789999999999999999999998 899999885
No 273
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.03 E-value=0.0017 Score=51.25 Aligned_cols=88 Identities=13% Similarity=0.084 Sum_probs=56.1
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce-ecChhhHhhcCCCEEEEecCchhHHHHHh
Q 044593 28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF-FADLNDLCELHPDVVLLSTSILSTQSVLK 106 (335)
Q Consensus 28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~-~~~~~~~~~~~aDvVIlavp~~~~~~vl~ 106 (335)
+.++.+|.|||.|.+|..=++.|.+.|.+|++++++. . ..+..+.. ....++.+ .++|+||.|++.....+.+.
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~---~-~~~~~i~~~~~~~~~~l-~~~~lV~~at~d~~~n~~i~ 78 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI---E-FSEGLIQLIRREFEEDL-DGADLVFAATDDPELNEAIY 78 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE---H-HHHTSCEEEESS-GGGC-TTESEEEE-SS-HHHHHHHH
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch---h-hhhhHHHHHhhhHHHHH-hhheEEEecCCCHHHHHHHH
Confidence 3467899999999999999999999999999998875 1 11122221 11223334 78999999998877665554
Q ss_pred hccccccCCccEEEEcCC
Q 044593 107 SIPFQRLKRSTLFVDVLS 124 (335)
Q Consensus 107 ~l~~~~l~~~~iVvd~~S 124 (335)
... +...+++++..
T Consensus 79 ~~a----~~~~i~vn~~D 92 (103)
T PF13241_consen 79 ADA----RARGILVNVVD 92 (103)
T ss_dssp HHH----HHTTSEEEETT
T ss_pred HHH----hhCCEEEEECC
Confidence 442 22335555543
No 274
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.03 E-value=0.0032 Score=60.04 Aligned_cols=64 Identities=19% Similarity=0.169 Sum_probs=43.6
Q ss_pred CeEEEEcc-cHHHHHHHHHHHHcCC-------eEEEEcCCC--CcHH-HHHh---------CCCceecChhhHhhcCCCE
Q 044593 32 LKIAVIGF-GNFGQFLAKAFARHHH-------TLLVHSRSD--HSPA-VRQQ---------LNAPFFADLNDLCELHPDV 91 (335)
Q Consensus 32 ~kI~IIG~-G~mG~siA~~L~~~G~-------~V~~~dr~~--~~~~-~a~~---------~g~~~~~~~~~~~~~~aDv 91 (335)
.||+|||+ |.+|+.++..|...|. ++.++|+++ +..+ .+.+ .+.....+..+.+ ++||+
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~-~~aDi 79 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAF-KDVDV 79 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHh-CCCCE
Confidence 38999998 9999999999998663 499999987 4321 0100 0112223344555 89999
Q ss_pred EEEec
Q 044593 92 VLLST 96 (335)
Q Consensus 92 VIlav 96 (335)
||++.
T Consensus 80 VVitA 84 (323)
T cd00704 80 AILVG 84 (323)
T ss_pred EEEeC
Confidence 99876
No 275
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=97.01 E-value=0.0018 Score=62.03 Aligned_cols=91 Identities=13% Similarity=0.184 Sum_probs=59.6
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHHcCC---eEEEEcCCCC---cHHHHHhCCCceecChhhHhhcCCCEEEEecCchhH
Q 044593 29 STSLKIAVIG-FGNFGQFLAKAFARHHH---TLLVHSRSDH---SPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILST 101 (335)
Q Consensus 29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~---~V~~~dr~~~---~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~ 101 (335)
+..+||+||| .|..|.-+.+.|.+..| ++..+..+.. ... .....+.+. +.++....++|++|+|+|....
T Consensus 2 ~~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~-~~~~~~~v~-~~~~~~~~~~Dvvf~a~p~~~s 79 (336)
T PRK08040 2 SEGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLR-FGGKSVTVQ-DAAEFDWSQAQLAFFVAGREAS 79 (336)
T ss_pred CCCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEE-ECCcceEEE-eCchhhccCCCEEEECCCHHHH
Confidence 3568999999 59999999999998544 5554432221 111 111112222 3333211579999999999988
Q ss_pred HHHHhhccccccCCccEEEEcCCC
Q 044593 102 QSVLKSIPFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 102 ~~vl~~l~~~~l~~~~iVvd~~Sv 125 (335)
.++...+. +.|+.|+|.++-
T Consensus 80 ~~~~~~~~----~~g~~VIDlS~~ 99 (336)
T PRK08040 80 AAYAEEAT----NAGCLVIDSSGL 99 (336)
T ss_pred HHHHHHHH----HCCCEEEECChH
Confidence 88877662 468899999864
No 276
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.00 E-value=0.0039 Score=62.61 Aligned_cols=68 Identities=15% Similarity=0.139 Sum_probs=50.5
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcH-HHHHhCCCceec--ChhhHhhcCCCEEEEec
Q 044593 28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSP-AVRQQLNAPFFA--DLNDLCELHPDVVLLST 96 (335)
Q Consensus 28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~-~~a~~~g~~~~~--~~~~~~~~~aDvVIlav 96 (335)
+..++||.|+|+|..|.++|+.|.+.|++|+++|++.... +...+.|+.... +..+.+ .++|+||.+-
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~-~~~d~vV~Sp 82 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQL-DSFSLVVTSP 82 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHh-cCCCEEEeCC
Confidence 3456789999999999999999999999999999876433 223456876542 222334 6799999863
No 277
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=96.99 E-value=0.0078 Score=59.68 Aligned_cols=94 Identities=19% Similarity=0.145 Sum_probs=60.1
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHHc-------CC--eEEEEcCCCCcHH-HHHhC---------CCceecChhhHhhcC
Q 044593 29 STSLKIAVIGF-GNFGQFLAKAFARH-------HH--TLLVHSRSDHSPA-VRQQL---------NAPFFADLNDLCELH 88 (335)
Q Consensus 29 ~~~~kI~IIG~-G~mG~siA~~L~~~-------G~--~V~~~dr~~~~~~-~a~~~---------g~~~~~~~~~~~~~~ 88 (335)
.+.-||+|||+ |.+|+++|..|... |. +++++|++++..+ .+.++ .+....+..+.+ ++
T Consensus 98 ~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~-kd 176 (444)
T PLN00112 98 KKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVF-QD 176 (444)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHh-Cc
Confidence 34579999999 99999999999987 65 7899999987543 12211 222223333444 89
Q ss_pred CCEEEEecCchh----------------HHHHHhhccccccCCccEEEEcCC
Q 044593 89 PDVVLLSTSILS----------------TQSVLKSIPFQRLKRSTLFVDVLS 124 (335)
Q Consensus 89 aDvVIlavp~~~----------------~~~vl~~l~~~~l~~~~iVvd~~S 124 (335)
||+||++.-... +.++.+.+. .+..++.+|+-+++
T Consensus 177 aDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~-~~a~p~~ivIVVsN 227 (444)
T PLN00112 177 AEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALN-EVASRNVKVIVVGN 227 (444)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HhcCCCeEEEEcCC
Confidence 999999764311 233444442 22356777776653
No 278
>CHL00194 ycf39 Ycf39; Provisional
Probab=96.98 E-value=0.0017 Score=61.50 Aligned_cols=65 Identities=12% Similarity=0.175 Sum_probs=48.3
Q ss_pred CeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce----ecC---hhhHhhcCCCEEEEecC
Q 044593 32 LKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF----FAD---LNDLCELHPDVVLLSTS 97 (335)
Q Consensus 32 ~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~----~~~---~~~~~~~~aDvVIlavp 97 (335)
|||.|+| .|.+|+.++..|.+.|++|.+.+|+++........++.. ..+ +.+++ .++|+||.++.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al-~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSF-KGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHH-CCCCEEEECCC
Confidence 6899999 699999999999999999999999865433233345532 122 33445 78999998764
No 279
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=96.98 E-value=0.0033 Score=60.39 Aligned_cols=67 Identities=22% Similarity=0.388 Sum_probs=53.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHc--CCeE-EEEcCCCCc-HHHHHhCCCceecChhhHhhcCCCEEEEecCc
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARH--HHTL-LVHSRSDHS-PAVRQQLNAPFFADLNDLCELHPDVVLLSTSI 98 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~--G~~V-~~~dr~~~~-~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~ 98 (335)
...||+|||+ .||...+.++.+. ++++ .++|++++. .+.+.+.|+..+++.++++ .+.|++++++|.
T Consensus 2 ~~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell-~d~Di~~V~ipt 72 (343)
T TIGR01761 2 DVQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELP-DDIDIACVVVRS 72 (343)
T ss_pred CCcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHh-cCCCEEEEEeCC
Confidence 3579999999 6899999999875 4676 467999865 4567778988888999998 778888888754
No 280
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.98 E-value=0.0044 Score=55.25 Aligned_cols=73 Identities=15% Similarity=0.057 Sum_probs=52.9
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCc-H-HHHHhCCCcee---cChhhHhhcCCCEEEEecCchhHHH
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHS-P-AVRQQLNAPFF---ADLNDLCELHPDVVLLSTSILSTQS 103 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~-~-~~a~~~g~~~~---~~~~~~~~~~aDvVIlavp~~~~~~ 103 (335)
..+++|.|||.|.+|..-++.|.+.|.+|++++++... . +.+.+..+... ....+ + .++|+||.||.......
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~d-l-~~~~lVi~at~d~~ln~ 84 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADI-L-EGAFLVIAATDDEELNR 84 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHH-h-CCcEEEEECCCCHHHHH
Confidence 45779999999999999999999999999999987642 2 32333233321 12233 4 78999999998875543
No 281
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.97 E-value=0.0024 Score=63.74 Aligned_cols=65 Identities=17% Similarity=0.094 Sum_probs=48.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEe
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLS 95 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIla 95 (335)
.++||.|||+|..|.+.|..|.+.|++|+++|..+.......+.|+.......+.. .++|+||.+
T Consensus 8 ~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~-~~~d~vv~s 72 (460)
T PRK01390 8 AGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADW-SGFAALVLS 72 (460)
T ss_pred CCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHH-cCCCEEEEC
Confidence 46789999999999999999999999999999775433334456775432112223 579998874
No 282
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.96 E-value=0.0027 Score=61.22 Aligned_cols=91 Identities=18% Similarity=0.197 Sum_probs=60.4
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHHcCC-eEEEEcCCCCcH-HHHHh---C-----------CCcee-cChhhHhhcCCC
Q 044593 29 STSLKIAVIG-FGNFGQFLAKAFARHHH-TLLVHSRSDHSP-AVRQQ---L-----------NAPFF-ADLNDLCELHPD 90 (335)
Q Consensus 29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~-~V~~~dr~~~~~-~~a~~---~-----------g~~~~-~~~~~~~~~~aD 90 (335)
|+++||+|+| .|.+|+.+.+.|.+... +++++.+++... +.... . .+... .+.+. . .++|
T Consensus 1 ~~~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~-~~~D 78 (349)
T PRK08664 1 MMKLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEA-V-DDVD 78 (349)
T ss_pred CCCcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHH-h-cCCC
Confidence 3468999998 89999999999987654 887774443221 10110 0 01111 23333 3 6899
Q ss_pred EEEEecCchhHHHHHhhccccccCCccEEEEcCCC
Q 044593 91 VVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 91 vVIlavp~~~~~~vl~~l~~~~l~~~~iVvd~~Sv 125 (335)
+|+.|+|.....++.+.+. ..|..++|.++.
T Consensus 79 vVf~a~p~~~s~~~~~~~~----~~G~~vIDls~~ 109 (349)
T PRK08664 79 IVFSALPSDVAGEVEEEFA----KAGKPVFSNASA 109 (349)
T ss_pred EEEEeCChhHHHHHHHHHH----HCCCEEEECCch
Confidence 9999999988777776552 367889999875
No 283
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.95 E-value=0.0031 Score=58.79 Aligned_cols=76 Identities=13% Similarity=0.185 Sum_probs=60.3
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593 29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS 107 (335)
Q Consensus 29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~ 107 (335)
..+++|.||| ...+|.-++..|.+.|..|++++.... ++.+.. ++||+||.|+.-... +.
T Consensus 157 l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T~--------------~l~~~~-~~ADIvIsAvGk~~~---i~- 217 (284)
T PRK14177 157 VTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKTQ--------------NLPSIV-RQADIIVGAVGKPEF---IK- 217 (284)
T ss_pred CCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCC--------------CHHHHH-hhCCEEEEeCCCcCc---cC-
Confidence 4578999999 689999999999999999998875432 345556 799999999986543 22
Q ss_pred ccccccCCccEEEEcCCC
Q 044593 108 IPFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 108 l~~~~l~~~~iVvd~~Sv 125 (335)
...+++|++|+|++..
T Consensus 218 --~~~ik~gavVIDvGin 233 (284)
T PRK14177 218 --ADWISEGAVLLDAGYN 233 (284)
T ss_pred --HHHcCCCCEEEEecCc
Confidence 2468899999999864
No 284
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.95 E-value=0.0024 Score=54.98 Aligned_cols=62 Identities=24% Similarity=0.251 Sum_probs=48.3
Q ss_pred EEEEcc-cHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce----ecCh---hhHhhcCCCEEEEecCc
Q 044593 34 IAVIGF-GNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF----FADL---NDLCELHPDVVLLSTSI 98 (335)
Q Consensus 34 I~IIG~-G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~----~~~~---~~~~~~~aDvVIlavp~ 98 (335)
|.|+|. |.+|..++..|.+.|++|+++.|+++..+. ..++.. ..+. .+++ .++|.||.+++.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~~~~~d~~d~~~~~~al-~~~d~vi~~~~~ 70 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--SPGVEIIQGDLFDPDSVKAAL-KGADAVIHAAGP 70 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTEEEEESCTTCHHHHHHHH-TTSSEEEECCHS
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--ccccccceeeehhhhhhhhhh-hhcchhhhhhhh
Confidence 789995 999999999999999999999999886654 444432 2233 3444 799999999974
No 285
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.94 E-value=0.0025 Score=59.54 Aligned_cols=76 Identities=18% Similarity=0.231 Sum_probs=59.6
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593 29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS 107 (335)
Q Consensus 29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~ 107 (335)
..+++|.||| ...+|.-++..|.+.|..|+++.... .++.+.. ++||+||.|+.-... +.
T Consensus 153 l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T--------------~~l~~~~-~~ADIvIsAvGkp~~---i~- 213 (287)
T PRK14173 153 LAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT--------------QDLPAVT-RRADVLVVAVGRPHL---IT- 213 (287)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHH-hhCCEEEEecCCcCc---cC-
Confidence 4578999999 68999999999999999999886443 2345566 789999999986542 22
Q ss_pred ccccccCCccEEEEcCCC
Q 044593 108 IPFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 108 l~~~~l~~~~iVvd~~Sv 125 (335)
..++++|++|+|++..
T Consensus 214 --~~~vk~GavVIDVGin 229 (287)
T PRK14173 214 --PEMVRPGAVVVDVGIN 229 (287)
T ss_pred --HHHcCCCCEEEEccCc
Confidence 2468899999999854
No 286
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=96.93 E-value=0.0015 Score=63.76 Aligned_cols=77 Identities=17% Similarity=0.170 Sum_probs=54.2
Q ss_pred CeEEEEcccHHHH-HHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCc---e---------------e--cChhhHh--hcC
Q 044593 32 LKIAVIGFGNFGQ-FLAKAFARHHHTLLVHSRSDHSPAVRQQLNAP---F---------------F--ADLNDLC--ELH 88 (335)
Q Consensus 32 ~kI~IIG~G~mG~-siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~---~---------------~--~~~~~~~--~~~ 88 (335)
|||.++|+|+||+ .++..|.+.|++|+++|+++...+...+.|.- . . .+.+++. ..+
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~ 80 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEAVIEAIAE 80 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHHHHHHhcC
Confidence 7999999999997 55888889999999999887766655554431 0 0 0112221 047
Q ss_pred CCEEEEecCchhHHHHHhhc
Q 044593 89 PDVVLLSTSILSTQSVLKSI 108 (335)
Q Consensus 89 aDvVIlavp~~~~~~vl~~l 108 (335)
+|+|+++|+......+...+
T Consensus 81 ~dlvt~~v~~~~~~s~~~~l 100 (381)
T PRK02318 81 ADLVTTAVGPNILPFIAPLI 100 (381)
T ss_pred CCEEEeCCCcccchhHHHHH
Confidence 89999999887766655555
No 287
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=96.93 E-value=0.0033 Score=59.04 Aligned_cols=76 Identities=16% Similarity=0.172 Sum_probs=59.7
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593 29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS 107 (335)
Q Consensus 29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~ 107 (335)
..+++|.||| ...+|.-++..|.+.|..|+++.... .++.+.+ +++|+||.|+.-. .++
T Consensus 165 l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T--------------~nl~~~~-~~ADIvv~AvGk~---~~i-- 224 (299)
T PLN02516 165 IKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRT--------------PDPESIV-READIVIAAAGQA---MMI-- 224 (299)
T ss_pred CCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHH-hhCCEEEEcCCCc---Ccc--
Confidence 4579999999 68899999999999999999886432 2345666 8999999998754 222
Q ss_pred ccccccCCccEEEEcCCC
Q 044593 108 IPFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 108 l~~~~l~~~~iVvd~~Sv 125 (335)
....+++|++|+|++..
T Consensus 225 -~~~~vk~gavVIDvGin 241 (299)
T PLN02516 225 -KGDWIKPGAAVIDVGTN 241 (299)
T ss_pred -CHHHcCCCCEEEEeecc
Confidence 23568899999999854
No 288
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.92 E-value=0.0025 Score=59.23 Aligned_cols=76 Identities=16% Similarity=0.306 Sum_probs=59.9
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593 29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS 107 (335)
Q Consensus 29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~ 107 (335)
..++++.||| ...+|.-++..|.+.|..|+++.... .++.+.. ++||+||.|+.-... +.
T Consensus 156 l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T--------------~~l~~~~-~~ADIvIsAvGkp~~---i~- 216 (278)
T PRK14172 156 IEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKT--------------KNLKEVC-KKADILVVAIGRPKF---ID- 216 (278)
T ss_pred CCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHH-hhCCEEEEcCCCcCc---cC-
Confidence 4578999999 68899999999999999999887542 2345566 789999999986543 22
Q ss_pred ccccccCCccEEEEcCCC
Q 044593 108 IPFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 108 l~~~~l~~~~iVvd~~Sv 125 (335)
...+++|++|+|++-.
T Consensus 217 --~~~ik~gavVIDvGin 232 (278)
T PRK14172 217 --EEYVKEGAIVIDVGTS 232 (278)
T ss_pred --HHHcCCCcEEEEeecc
Confidence 3468899999999743
No 289
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.92 E-value=0.0033 Score=58.57 Aligned_cols=76 Identities=16% Similarity=0.290 Sum_probs=59.6
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593 29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS 107 (335)
Q Consensus 29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~ 107 (335)
-.+++|.||| ...+|.-++..|.+.|..|+++.... .++.+.. ++||+||.|+.-... +.
T Consensus 154 l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T--------------~~l~~~~-~~ADIvI~AvG~p~~---i~- 214 (282)
T PRK14169 154 VAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT--------------RNLKQLT-KEADILVVAVGVPHF---IG- 214 (282)
T ss_pred CCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCC--------------CCHHHHH-hhCCEEEEccCCcCc---cC-
Confidence 3578999999 68899999999999999998885432 2345556 789999999986653 22
Q ss_pred ccccccCCccEEEEcCCC
Q 044593 108 IPFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 108 l~~~~l~~~~iVvd~~Sv 125 (335)
...+++|++|+|++..
T Consensus 215 --~~~vk~GavVIDvGin 230 (282)
T PRK14169 215 --ADAVKPGAVVIDVGIS 230 (282)
T ss_pred --HHHcCCCcEEEEeecc
Confidence 2468899999999854
No 290
>PTZ00325 malate dehydrogenase; Provisional
Probab=96.91 E-value=0.0019 Score=61.56 Aligned_cols=66 Identities=23% Similarity=0.274 Sum_probs=44.4
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHHcC--CeEEEEcCCCCcHHHHHh-------CCCceecCh---hhHhhcCCCEEEEec
Q 044593 30 TSLKIAVIGF-GNFGQFLAKAFARHH--HTLLVHSRSDHSPAVRQQ-------LNAPFFADL---NDLCELHPDVVLLST 96 (335)
Q Consensus 30 ~~~kI~IIG~-G~mG~siA~~L~~~G--~~V~~~dr~~~~~~~a~~-------~g~~~~~~~---~~~~~~~aDvVIlav 96 (335)
++.||+|||+ |.+|+.+|..|...+ .++.++|++.... .+.+ ..+...++. .+.+ +++|+||++.
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g-~a~Dl~~~~~~~~v~~~td~~~~~~~l-~gaDvVVita 84 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPG-VAADLSHIDTPAKVTGYADGELWEKAL-RGADLVLICA 84 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcc-cccchhhcCcCceEEEecCCCchHHHh-CCCCEEEECC
Confidence 5679999998 999999999998666 4899999943211 1111 111222221 3445 8999999876
Q ss_pred C
Q 044593 97 S 97 (335)
Q Consensus 97 p 97 (335)
-
T Consensus 85 G 85 (321)
T PTZ00325 85 G 85 (321)
T ss_pred C
Confidence 3
No 291
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=96.91 E-value=0.004 Score=58.82 Aligned_cols=78 Identities=17% Similarity=0.196 Sum_probs=55.7
Q ss_pred CeEEEEc-ccHHHHHHHHHHHHcCC-eEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhhcc
Q 044593 32 LKIAVIG-FGNFGQFLAKAFARHHH-TLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSIP 109 (335)
Q Consensus 32 ~kI~IIG-~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~l~ 109 (335)
.||+|+| .|..|.-+.+.|....+ ++.....+.. .. ..+.+++. .++|++|+|+|.....++...+.
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~---------~~-~~~~~~~~-~~~D~vFlalp~~~s~~~~~~~~ 70 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR---------KD-AAERAKLL-NAADVAILCLPDDAAREAVSLVD 70 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc---------cC-cCCHhHhh-cCCCEEEECCCHHHHHHHHHHHH
Confidence 4899999 69999999999998753 5543322211 00 11334555 68999999999998888877662
Q ss_pred ccccCCccEEEEcCC
Q 044593 110 FQRLKRSTLFVDVLS 124 (335)
Q Consensus 110 ~~~l~~~~iVvd~~S 124 (335)
..|+.|+|.++
T Consensus 71 ----~~g~~VIDlSa 81 (310)
T TIGR01851 71 ----NPNTCIIDAST 81 (310)
T ss_pred ----hCCCEEEECCh
Confidence 36889999985
No 292
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.90 E-value=0.0032 Score=58.74 Aligned_cols=76 Identities=13% Similarity=0.229 Sum_probs=59.8
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593 29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS 107 (335)
Q Consensus 29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~ 107 (335)
..+++|.||| ...+|.-+|..|.+.|..|+++.... .++.+.+ ++||+||.|+..... +.
T Consensus 156 l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t--------------~~l~~~~-~~ADIvI~AvG~p~~---i~- 216 (284)
T PRK14190 156 ISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKT--------------KNLAELT-KQADILIVAVGKPKL---IT- 216 (284)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCc--------------hhHHHHH-HhCCEEEEecCCCCc---CC-
Confidence 3578999999 78999999999999999999886432 2445566 799999999975542 22
Q ss_pred ccccccCCccEEEEcCCC
Q 044593 108 IPFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 108 l~~~~l~~~~iVvd~~Sv 125 (335)
...+++|++|+|++..
T Consensus 217 --~~~ik~gavVIDvGi~ 232 (284)
T PRK14190 217 --ADMVKEGAVVIDVGVN 232 (284)
T ss_pred --HHHcCCCCEEEEeecc
Confidence 3468899999999754
No 293
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.90 E-value=0.0028 Score=59.49 Aligned_cols=76 Identities=18% Similarity=0.183 Sum_probs=59.7
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593 29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS 107 (335)
Q Consensus 29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~ 107 (335)
..+++|.||| ...+|.-++..|.+.|..|+++.... .++.+.+ ++||+||.|+.-... +.
T Consensus 156 l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T--------------~~l~~~~-~~ADIvIsAvGkp~~---i~- 216 (297)
T PRK14186 156 IAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRT--------------QDLASIT-READILVAAAGRPNL---IG- 216 (297)
T ss_pred CCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHH-hhCCEEEEccCCcCc---cC-
Confidence 4578999999 68899999999999999998885432 2345566 789999999985542 22
Q ss_pred ccccccCCccEEEEcCCC
Q 044593 108 IPFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 108 l~~~~l~~~~iVvd~~Sv 125 (335)
..++++|++|+|++..
T Consensus 217 --~~~ik~gavVIDvGin 232 (297)
T PRK14186 217 --AEMVKPGAVVVDVGIH 232 (297)
T ss_pred --HHHcCCCCEEEEeccc
Confidence 3468899999999855
No 294
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=96.89 E-value=0.0024 Score=61.38 Aligned_cols=87 Identities=15% Similarity=0.184 Sum_probs=57.7
Q ss_pred eEEEEc-ccHHHHHHHHHHHHcCCe---EEEEcCCCCcHHHHHhCCCce-ecCh-hhHhhcCCCEEEEecCchhHHHHHh
Q 044593 33 KIAVIG-FGNFGQFLAKAFARHHHT---LLVHSRSDHSPAVRQQLNAPF-FADL-NDLCELHPDVVLLSTSILSTQSVLK 106 (335)
Q Consensus 33 kI~IIG-~G~mG~siA~~L~~~G~~---V~~~dr~~~~~~~a~~~g~~~-~~~~-~~~~~~~aDvVIlavp~~~~~~vl~ 106 (335)
||+||| .|.+|..+.+.|.+.+|. +..+.++...-+.....|... ..+. .+.. .++|+||+|+|.....++..
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~~-~~~D~v~~a~g~~~s~~~a~ 79 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESF-EGIDIALFSAGGSVSKEFAP 79 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHHh-cCCCEEEECCCHHHHHHHHH
Confidence 689999 699999999999998875 334434332211111123211 1111 2223 68999999999998888877
Q ss_pred hccccccCCccEEEEcCC
Q 044593 107 SIPFQRLKRSTLFVDVLS 124 (335)
Q Consensus 107 ~l~~~~l~~~~iVvd~~S 124 (335)
.+ ++.|..|+|.++
T Consensus 80 ~~----~~~G~~VID~ss 93 (339)
T TIGR01296 80 KA----AKCGAIVIDNTS 93 (339)
T ss_pred HH----HHCCCEEEECCH
Confidence 65 346789999986
No 295
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.87 E-value=0.0035 Score=58.38 Aligned_cols=76 Identities=14% Similarity=0.200 Sum_probs=59.5
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593 29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS 107 (335)
Q Consensus 29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~ 107 (335)
-.+++|.||| ...+|.-++..|.++|..|+++..... ++.+.. ++||+||.|++-... +.
T Consensus 156 l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T~--------------dl~~~~-k~ADIvIsAvGkp~~---i~- 216 (282)
T PRK14180 156 TEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTT--------------DLKSHT-TKADILIVAVGKPNF---IT- 216 (282)
T ss_pred CCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCCC--------------CHHHHh-hhcCEEEEccCCcCc---CC-
Confidence 3578999999 688999999999999999998865432 344555 789999999986543 22
Q ss_pred ccccccCCccEEEEcCCC
Q 044593 108 IPFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 108 l~~~~l~~~~iVvd~~Sv 125 (335)
...+++|++|+|++..
T Consensus 217 --~~~vk~gavVIDvGin 232 (282)
T PRK14180 217 --ADMVKEGAVVIDVGIN 232 (282)
T ss_pred --HHHcCCCcEEEEeccc
Confidence 2458899999999854
No 296
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.85 E-value=0.0033 Score=58.62 Aligned_cols=76 Identities=18% Similarity=0.269 Sum_probs=59.8
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593 29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS 107 (335)
Q Consensus 29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~ 107 (335)
..+++|.||| ...+|.-++..|.+.|..|+++.... .++.+.+ ++||+||.|+.-... +.
T Consensus 155 l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T--------------~~l~~~~-~~ADIvI~AvG~~~~---i~- 215 (284)
T PRK14170 155 IEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRT--------------KDLPQVA-KEADILVVATGLAKF---VK- 215 (284)
T ss_pred CCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHH-hhCCEEEEecCCcCc---cC-
Confidence 4578999999 68889999999999999999886432 2345566 799999999986543 22
Q ss_pred ccccccCCccEEEEcCCC
Q 044593 108 IPFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 108 l~~~~l~~~~iVvd~~Sv 125 (335)
...+++|++|+|++..
T Consensus 216 --~~~vk~GavVIDvGin 231 (284)
T PRK14170 216 --KDYIKPGAIVIDVGMD 231 (284)
T ss_pred --HHHcCCCCEEEEccCc
Confidence 2468899999999865
No 297
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.85 E-value=0.004 Score=58.31 Aligned_cols=75 Identities=20% Similarity=0.317 Sum_probs=59.5
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593 29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS 107 (335)
Q Consensus 29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~ 107 (335)
-.+++|.||| ...+|.-++..|.+.|..|+++.... .++.+.+ ++||+||.|+.-... +
T Consensus 158 l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T--------------~~l~~~~-~~ADIvVsAvGkp~~---i-- 217 (294)
T PRK14187 158 LSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT--------------RDLADYC-SKADILVAAVGIPNF---V-- 217 (294)
T ss_pred CCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC--------------CCHHHHH-hhCCEEEEccCCcCc---c--
Confidence 4578999999 68899999999999999999887543 2345566 799999999986543 2
Q ss_pred ccccccCCccEEEEcCC
Q 044593 108 IPFQRLKRSTLFVDVLS 124 (335)
Q Consensus 108 l~~~~l~~~~iVvd~~S 124 (335)
...++++|++|+|++-
T Consensus 218 -~~~~ik~gaiVIDVGi 233 (294)
T PRK14187 218 -KYSWIKKGAIVIDVGI 233 (294)
T ss_pred -CHHHcCCCCEEEEecc
Confidence 2346889999999974
No 298
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=96.83 E-value=0.0011 Score=62.85 Aligned_cols=88 Identities=18% Similarity=0.280 Sum_probs=56.0
Q ss_pred eEEEEcc-cHHHHHHHHHHHHcCC--eEEEEcCCCCcHHHHHhC--C---Ccee--c-C--hhhHhhcCCCEEEEecCch
Q 044593 33 KIAVIGF-GNFGQFLAKAFARHHH--TLLVHSRSDHSPAVRQQL--N---APFF--A-D--LNDLCELHPDVVLLSTSIL 99 (335)
Q Consensus 33 kI~IIG~-G~mG~siA~~L~~~G~--~V~~~dr~~~~~~~a~~~--g---~~~~--~-~--~~~~~~~~aDvVIlavp~~ 99 (335)
||+|||+ |.+|+++|..|...++ ++.++|+++ ....+.++ + .... . + +.+.+ +++|+||++.-..
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~-a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~-~daDivvitaG~~ 78 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG-AAGVAADLSHIPTAASVKGFSGEEGLENAL-KGADVVVIPAGVP 78 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC-CcEEEchhhcCCcCceEEEecCCCchHHHc-CCCCEEEEeCCCC
Confidence 7999999 9999999999988876 799999987 21111111 1 1111 1 1 23445 8999999977432
Q ss_pred h----------------HHHHHhhccccccCCccEEEEcCC
Q 044593 100 S----------------TQSVLKSIPFQRLKRSTLFVDVLS 124 (335)
Q Consensus 100 ~----------------~~~vl~~l~~~~l~~~~iVvd~~S 124 (335)
. +.++.+.+. . ..++++|+.+++
T Consensus 79 ~~~g~~R~dll~~N~~I~~~i~~~i~-~-~~p~~iiivvsN 117 (312)
T TIGR01772 79 RKPGMTRDDLFNVNAGIVKDLVAAVA-E-SCPKAMILVITN 117 (312)
T ss_pred CCCCccHHHHHHHhHHHHHHHHHHHH-H-hCCCeEEEEecC
Confidence 1 233444443 2 357777777764
No 299
>PRK06349 homoserine dehydrogenase; Provisional
Probab=96.82 E-value=0.0027 Score=62.89 Aligned_cols=70 Identities=16% Similarity=0.200 Sum_probs=47.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHc--------C--CeE-EEEcCCCCcHHHHHhCCCceecChhhHhh-cCCCEEEEecC
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARH--------H--HTL-LVHSRSDHSPAVRQQLNAPFFADLNDLCE-LHPDVVLLSTS 97 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~--------G--~~V-~~~dr~~~~~~~a~~~g~~~~~~~~~~~~-~~aDvVIlavp 97 (335)
+..||+|||+|.||+.++..|.++ | .+| .++|++..........+...+++.++++. .+.|+|+.|++
T Consensus 2 ~~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg 81 (426)
T PRK06349 2 KPLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMG 81 (426)
T ss_pred CeEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCC
Confidence 457999999999999999888553 2 354 46688765432111123345677777762 35799999987
Q ss_pred ch
Q 044593 98 IL 99 (335)
Q Consensus 98 ~~ 99 (335)
..
T Consensus 82 ~~ 83 (426)
T PRK06349 82 GI 83 (426)
T ss_pred Cc
Confidence 53
No 300
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.82 E-value=0.0034 Score=58.49 Aligned_cols=76 Identities=18% Similarity=0.216 Sum_probs=59.6
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593 29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS 107 (335)
Q Consensus 29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~ 107 (335)
..+++|.||| ...+|.-++..|.+.|..|+++.... .++.+.. ++||+||.|+.-... +.
T Consensus 155 l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T--------------~nl~~~~-~~ADIvIsAvGkp~~---i~- 215 (282)
T PRK14166 155 LEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT--------------KDLSLYT-RQADLIIVAAGCVNL---LR- 215 (282)
T ss_pred CCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHH-hhCCEEEEcCCCcCc---cC-
Confidence 4678999999 68899999999999999999887543 2345566 789999999986543 22
Q ss_pred ccccccCCccEEEEcCCC
Q 044593 108 IPFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 108 l~~~~l~~~~iVvd~~Sv 125 (335)
...+++|++|+|++-.
T Consensus 216 --~~~vk~GavVIDvGin 231 (282)
T PRK14166 216 --SDMVKEGVIVVDVGIN 231 (282)
T ss_pred --HHHcCCCCEEEEeccc
Confidence 2458899999999843
No 301
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.81 E-value=0.0039 Score=62.87 Aligned_cols=67 Identities=15% Similarity=0.110 Sum_probs=51.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceec--ChhhHhhcCCCEEEEecC
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFA--DLNDLCELHPDVVLLSTS 97 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~--~~~~~~~~~aDvVIlavp 97 (335)
.+++|.|+|+|..|.+.++.|...|++|+++|+++...+.+++.|+.... ...+.+ .++|+||.+..
T Consensus 11 ~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l-~~~D~VV~SpG 79 (488)
T PRK03369 11 PGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQI-ADYALVVTSPG 79 (488)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHh-hcCCEEEECCC
Confidence 45789999999999999999999999999999776555445667875432 222334 67999998653
No 302
>COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=96.81 E-value=0.056 Score=48.31 Aligned_cols=131 Identities=10% Similarity=0.115 Sum_probs=86.0
Q ss_pred CCceecChhhHhhcCCCEEEEecCchh-HHHHHhhccccccCCccEEEEcCCCCchHHH-HHHhhCCCCCceEeccccCC
Q 044593 74 NAPFFADLNDLCELHPDVVLLSTSILS-TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRN-LFLKYLPQDFDILCTHPMFG 151 (335)
Q Consensus 74 g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~-~l~~~l~~~~~~v~~HPmaG 151 (335)
|+..++|..+++ +++|+||.=.|-.. -..+++.+. ..+++|++|++.|++.+.-.. .+++....+.++-+.||-+-
T Consensus 126 g~~vttddreav-edad~iitwlpkg~~qpdiikkfi-ddipegaivthactipttkf~kifed~gredlnvtsyhpg~v 203 (343)
T COG4074 126 GIVVTTDDREAV-EDADMIITWLPKGGVQPDIIKKFI-DDIPEGAIVTHACTIPTTKFKKIFEDMGREDLNVTSYHPGTV 203 (343)
T ss_pred eeEEecCcHhhh-cCCCeEEEeccCCCCCccHHHHHH-hcCCCCceEeeecccchHHHHHHHHHhCccccceeccCCCCC
Confidence 445667777887 89999999888664 345666663 567899999999987654333 33333335568889999888
Q ss_pred CCCcccccCCCcceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHhhhhHHHH
Q 044593 152 PESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTM 217 (335)
Q Consensus 152 ~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~l 217 (335)
|+. +|+.++-+ .-.+++.++.+-++=+..-...+.+...--.-+.-++|.++..+
T Consensus 204 pem-----kgqvyiae------gyaseeavn~lyelg~karg~afk~pa~llgpvcdmcsavtaiv 258 (343)
T COG4074 204 PEM-----KGQVYIAE------GYASEEAVNALYELGEKARGLAFKVPAYLLGPVCDMCSAVTAIV 258 (343)
T ss_pred ccc-----cCcEEEec------ccccHHHHHHHHHHHHHhhcccccCcHHhhchHHHHHHHHHHHH
Confidence 884 56644432 12345677777776665544567777665555566666665543
No 303
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.80 E-value=0.0044 Score=59.54 Aligned_cols=89 Identities=15% Similarity=0.236 Sum_probs=59.0
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHH-cCCe---EEEEcCCCC---cHHHHHhCCCcee-cChhhHhhcCCCEEEEecCchh
Q 044593 30 TSLKIAVIG-FGNFGQFLAKAFAR-HHHT---LLVHSRSDH---SPAVRQQLNAPFF-ADLNDLCELHPDVVLLSTSILS 100 (335)
Q Consensus 30 ~~~kI~IIG-~G~mG~siA~~L~~-~G~~---V~~~dr~~~---~~~~a~~~g~~~~-~~~~~~~~~~aDvVIlavp~~~ 100 (335)
+.+||+||| .|..|.-+.+.|.+ ..++ +..+..... ..... ...+... .+..++ .++|++|+|+|...
T Consensus 4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~-~~~l~v~~~~~~~~--~~~Divf~a~~~~~ 80 (347)
T PRK06728 4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFK-GREIIIQEAKINSF--EGVDIAFFSAGGEV 80 (347)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeC-CcceEEEeCCHHHh--cCCCEEEECCChHH
Confidence 347999999 59999999999995 5666 544432221 11111 0112211 233333 68999999999998
Q ss_pred HHHHHhhccccccCCccEEEEcCCC
Q 044593 101 TQSVLKSIPFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 101 ~~~vl~~l~~~~l~~~~iVvd~~Sv 125 (335)
..++...+ .+.|+.|+|.+|.
T Consensus 81 s~~~~~~~----~~~G~~VID~Ss~ 101 (347)
T PRK06728 81 SRQFVNQA----VSSGAIVIDNTSE 101 (347)
T ss_pred HHHHHHHH----HHCCCEEEECchh
Confidence 88877765 3468999999874
No 304
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=96.79 E-value=0.013 Score=55.01 Aligned_cols=88 Identities=10% Similarity=0.078 Sum_probs=64.5
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHHcCCe-EEEEcCC--CCcHHHHHhCCCceecChhhHhhcC--CCEEEEecCchhHHH
Q 044593 30 TSLKIAVIG-FGNFGQFLAKAFARHHHT-LLVHSRS--DHSPAVRQQLNAPFFADLNDLCELH--PDVVLLSTSILSTQS 103 (335)
Q Consensus 30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~-V~~~dr~--~~~~~~a~~~g~~~~~~~~~~~~~~--aDvVIlavp~~~~~~ 103 (335)
+..||.|.| .|.+|+.+...|.+.|++ |+.+++. .+.. .|+..+.+..++. +. .|++|+++|...+.+
T Consensus 7 ~~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~pVnp~~~~~~v-----~G~~~y~sv~dlp-~~~~~DlAvi~vp~~~v~~ 80 (291)
T PRK05678 7 KDTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPGKGGTTV-----LGLPVFNTVAEAV-EATGANASVIYVPPPFAAD 80 (291)
T ss_pred CCCeEEEeCCCchHHHHHHHHHHHCCCCEEEEECCCCCCCeE-----eCeeccCCHHHHh-hccCCCEEEEEcCHHHHHH
Confidence 456899999 599999999999998886 3344544 2222 3777888888886 55 899999999999999
Q ss_pred HHhhccccccCCccEEEEcCCC
Q 044593 104 VLKSIPFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 104 vl~~l~~~~l~~~~iVvd~~Sv 125 (335)
++++... ..-+..|+-.++.
T Consensus 81 ~l~e~~~--~gvk~avI~s~Gf 100 (291)
T PRK05678 81 AILEAID--AGIDLIVCITEGI 100 (291)
T ss_pred HHHHHHH--CCCCEEEEECCCC
Confidence 9998742 2333445544444
No 305
>PLN00106 malate dehydrogenase
Probab=96.79 E-value=0.0022 Score=61.11 Aligned_cols=65 Identities=23% Similarity=0.317 Sum_probs=45.1
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHHcCC--eEEEEcCCCCcHHHHHhC-------CCce---ecChhhHhhcCCCEEEEecC
Q 044593 31 SLKIAVIGF-GNFGQFLAKAFARHHH--TLLVHSRSDHSPAVRQQL-------NAPF---FADLNDLCELHPDVVLLSTS 97 (335)
Q Consensus 31 ~~kI~IIG~-G~mG~siA~~L~~~G~--~V~~~dr~~~~~~~a~~~-------g~~~---~~~~~~~~~~~aDvVIlavp 97 (335)
..||+|||+ |.+|+++|..|...+. ++.++|+++. ...+.++ .+.. .++..+.+ +++|+||++.-
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~-~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l-~~aDiVVitAG 95 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANT-PGVAADVSHINTPAQVRGFLGDDQLGDAL-KGADLVIIPAG 95 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCC-CeeEchhhhCCcCceEEEEeCCCCHHHHc-CCCCEEEEeCC
Confidence 469999998 9999999999997775 8999999872 1111111 1111 12334555 89999999763
No 306
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.79 E-value=0.0047 Score=61.72 Aligned_cols=66 Identities=17% Similarity=0.177 Sum_probs=49.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcH-----HHHHhCCCceec--ChhhHhhcCCCEEEEec
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSP-----AVRQQLNAPFFA--DLNDLCELHPDVVLLST 96 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~-----~~a~~~g~~~~~--~~~~~~~~~aDvVIlav 96 (335)
.++||+|+|+|..|.++|+.|.+.|++|+++|+++... +...+.|+.... ...+.+ .++|+||++.
T Consensus 13 ~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~-~~~dlVV~Sp 85 (458)
T PRK01710 13 KNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKL-DGFDVIFKTP 85 (458)
T ss_pred cCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHh-ccCCEEEECC
Confidence 35789999999999999999999999999999875311 235566775432 222334 6899999874
No 307
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.78 E-value=0.0039 Score=58.05 Aligned_cols=76 Identities=14% Similarity=0.187 Sum_probs=58.7
Q ss_pred CCCCeEEEEccc-HHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593 29 STSLKIAVIGFG-NFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS 107 (335)
Q Consensus 29 ~~~~kI~IIG~G-~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~ 107 (335)
..+++|.|||-+ .+|.-+|..|.++|..|+++.... .++.+.+ ++||+||.|+.-... +.
T Consensus 155 l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T--------------~~l~~~~-~~ADIvV~AvGkp~~---i~- 215 (281)
T PRK14183 155 VKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFT--------------KDLKAHT-KKADIVIVGVGKPNL---IT- 215 (281)
T ss_pred CCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------cCHHHHH-hhCCEEEEecCcccc---cC-
Confidence 457899999965 999999999999999998875432 2345556 799999999975543 22
Q ss_pred ccccccCCccEEEEcCCC
Q 044593 108 IPFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 108 l~~~~l~~~~iVvd~~Sv 125 (335)
...+++|++|+|++..
T Consensus 216 --~~~vk~gavvIDvGin 231 (281)
T PRK14183 216 --EDMVKEGAIVIDIGIN 231 (281)
T ss_pred --HHHcCCCcEEEEeecc
Confidence 2468899999999854
No 308
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=96.77 E-value=0.0023 Score=65.09 Aligned_cols=95 Identities=20% Similarity=0.232 Sum_probs=61.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcH-HHHHhCCCce--ecChhhHhhcCCCEEEEecCchhHHHHH
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSP-AVRQQLNAPF--FADLNDLCELHPDVVLLSTSILSTQSVL 105 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~-~~a~~~g~~~--~~~~~~~~~~~aDvVIlavp~~~~~~vl 105 (335)
...+++.|+|.|.+|.+++..|.+.|++|++++|+.+.. +.+...+... ..+..+.....+|+||-|+|.......-
T Consensus 377 ~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~vGm~~~~~ 456 (529)
T PLN02520 377 LAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTTSVGMQPNVD 456 (529)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEecccCCCCCCCC
Confidence 346789999999999999999999999999999986543 3333333221 1222221113578999899877532110
Q ss_pred -hhccccccCCccEEEEcC
Q 044593 106 -KSIPFQRLKRSTLFVDVL 123 (335)
Q Consensus 106 -~~l~~~~l~~~~iVvd~~ 123 (335)
..+....++++.+|+|+.
T Consensus 457 ~~pl~~~~l~~~~~v~D~v 475 (529)
T PLN02520 457 ETPISKHALKHYSLVFDAV 475 (529)
T ss_pred CCcccHhhCCCCCEEEEec
Confidence 012113466778999985
No 309
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.77 E-value=0.0029 Score=58.81 Aligned_cols=76 Identities=13% Similarity=0.176 Sum_probs=59.2
Q ss_pred CCCCeEEEEccc-HHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593 29 STSLKIAVIGFG-NFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS 107 (335)
Q Consensus 29 ~~~~kI~IIG~G-~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~ 107 (335)
..+.+|.|||-+ ..|..+|..|...|..|+.+.++.. ++.+.+ ++||+||.|++-.. ++.
T Consensus 150 l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~--------------~L~~~~-~~ADIvI~Avgk~~---lv~- 210 (279)
T PRK14178 150 IAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKTE--------------NLKAEL-RQADILVSAAGKAG---FIT- 210 (279)
T ss_pred CCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecChh--------------HHHHHH-hhCCEEEECCCccc---ccC-
Confidence 457899999976 9999999999999999998876532 345556 79999999997442 222
Q ss_pred ccccccCCccEEEEcCCC
Q 044593 108 IPFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 108 l~~~~l~~~~iVvd~~Sv 125 (335)
...+++|++|+|++..
T Consensus 211 --~~~vk~GavVIDVgi~ 226 (279)
T PRK14178 211 --PDMVKPGATVIDVGIN 226 (279)
T ss_pred --HHHcCCCcEEEEeecc
Confidence 2347899999999854
No 310
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.76 E-value=0.004 Score=58.17 Aligned_cols=75 Identities=15% Similarity=0.234 Sum_probs=58.4
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593 29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS 107 (335)
Q Consensus 29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~ 107 (335)
..++++.||| ...+|.-++..|.+.|..|+++.... .++.+.+ ++||+||.|+.-.. ++.
T Consensus 157 l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T--------------~~L~~~~-~~ADIvV~AvGkp~---~i~- 217 (288)
T PRK14171 157 LTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKT--------------HNLSSIT-SKADIVVAAIGSPL---KLT- 217 (288)
T ss_pred CCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHH-hhCCEEEEccCCCC---ccC-
Confidence 4578999999 68899999999999999999886432 2345566 78999999998543 222
Q ss_pred ccccccCCccEEEEcCC
Q 044593 108 IPFQRLKRSTLFVDVLS 124 (335)
Q Consensus 108 l~~~~l~~~~iVvd~~S 124 (335)
...+++|++|+|++-
T Consensus 218 --~~~vk~GavVIDvGi 232 (288)
T PRK14171 218 --AEYFNPESIVIDVGI 232 (288)
T ss_pred --HHHcCCCCEEEEeec
Confidence 246889999999973
No 311
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.76 E-value=0.004 Score=58.04 Aligned_cols=76 Identities=16% Similarity=0.211 Sum_probs=59.3
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHH--cCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHH
Q 044593 29 STSLKIAVIG-FGNFGQFLAKAFAR--HHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVL 105 (335)
Q Consensus 29 ~~~~kI~IIG-~G~mG~siA~~L~~--~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl 105 (335)
..++++.||| .+.+|.-++..|.+ .+..|+++.... .++.+.+ ++||+||.|+.-... +
T Consensus 156 l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~T--------------~~l~~~~-k~ADIvV~AvGkp~~---i 217 (284)
T PRK14193 156 LAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTGT--------------RDLAAHT-RRADIIVAAAGVAHL---V 217 (284)
T ss_pred CCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCCC--------------CCHHHHH-HhCCEEEEecCCcCc---c
Confidence 3578999999 68999999999988 688898886542 2445666 799999999986542 2
Q ss_pred hhccccccCCccEEEEcCCC
Q 044593 106 KSIPFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 106 ~~l~~~~l~~~~iVvd~~Sv 125 (335)
...++++|++|+|++..
T Consensus 218 ---~~~~ik~GavVIDvGin 234 (284)
T PRK14193 218 ---TADMVKPGAAVLDVGVS 234 (284)
T ss_pred ---CHHHcCCCCEEEEcccc
Confidence 23568899999999854
No 312
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.75 E-value=0.0053 Score=53.24 Aligned_cols=32 Identities=25% Similarity=0.324 Sum_probs=29.6
Q ss_pred eEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCC
Q 044593 33 KIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSD 64 (335)
Q Consensus 33 kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~ 64 (335)
||+|||+|.+|+.++..|...|. +++++|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 68999999999999999999998 699999875
No 313
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=96.75 E-value=0.0047 Score=61.73 Aligned_cols=66 Identities=20% Similarity=0.216 Sum_probs=49.2
Q ss_pred CCCeEEEEcccHHHHH-HHHHHHHcCCeEEEEcCCCCc-HHHHHhCCCceec-ChhhHhhcCCCEEEEec
Q 044593 30 TSLKIAVIGFGNFGQF-LAKAFARHHHTLLVHSRSDHS-PAVRQQLNAPFFA-DLNDLCELHPDVVLLST 96 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~s-iA~~L~~~G~~V~~~dr~~~~-~~~a~~~g~~~~~-~~~~~~~~~aDvVIlav 96 (335)
.+++|.|||+|..|.+ +|+.|.+.|++|+++|.++.. .+...+.|+.... ...+.+ .++|+||++-
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~-~~~d~vv~sp 74 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENI-KDADVVVYSS 74 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHC-CCCCEEEECC
Confidence 4578999999999999 899999999999999987642 2334556776532 223334 6799999854
No 314
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=96.75 E-value=0.0047 Score=59.19 Aligned_cols=75 Identities=15% Similarity=0.166 Sum_probs=59.5
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593 29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS 107 (335)
Q Consensus 29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~ 107 (335)
..+++|.||| ...+|.-++..|.+.|..|+++.... .++.+.+ ++||+||.|+.-... +
T Consensus 229 l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T--------------~nl~~~~-r~ADIVIsAvGkp~~---i-- 288 (364)
T PLN02616 229 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------KNPEEIT-READIIISAVGQPNM---V-- 288 (364)
T ss_pred CCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCC--------------CCHHHHH-hhCCEEEEcCCCcCc---C--
Confidence 4678999999 78899999999999999999886432 2345666 899999999986543 2
Q ss_pred ccccccCCccEEEEcCC
Q 044593 108 IPFQRLKRSTLFVDVLS 124 (335)
Q Consensus 108 l~~~~l~~~~iVvd~~S 124 (335)
....+++|++|+|++-
T Consensus 289 -~~d~vK~GAvVIDVGI 304 (364)
T PLN02616 289 -RGSWIKPGAVVIDVGI 304 (364)
T ss_pred -CHHHcCCCCEEEeccc
Confidence 2346889999999974
No 315
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=96.74 E-value=0.0094 Score=56.92 Aligned_cols=64 Identities=19% Similarity=0.127 Sum_probs=42.3
Q ss_pred eEEEEcc-cHHHHHHHHHHHHcCC-------eEEEEcCCCCcH-HHHHhC-----------CCceecChhhHhhcCCCEE
Q 044593 33 KIAVIGF-GNFGQFLAKAFARHHH-------TLLVHSRSDHSP-AVRQQL-----------NAPFFADLNDLCELHPDVV 92 (335)
Q Consensus 33 kI~IIG~-G~mG~siA~~L~~~G~-------~V~~~dr~~~~~-~~a~~~-----------g~~~~~~~~~~~~~~aDvV 92 (335)
||+|||+ |.+|++++..|...+. ++.++|+++... ..+..+ ++...++..+.+ ++||+|
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~-~~aDiV 79 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAF-TDVDVA 79 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHh-CCCCEE
Confidence 6999999 9999999999988653 599999965421 111111 111122323445 799999
Q ss_pred EEecC
Q 044593 93 LLSTS 97 (335)
Q Consensus 93 Ilavp 97 (335)
|++.-
T Consensus 80 VitAG 84 (324)
T TIGR01758 80 ILVGA 84 (324)
T ss_pred EEcCC
Confidence 99663
No 316
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=96.73 E-value=0.007 Score=50.42 Aligned_cols=32 Identities=19% Similarity=0.390 Sum_probs=29.8
Q ss_pred eEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCC
Q 044593 33 KIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSD 64 (335)
Q Consensus 33 kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~ 64 (335)
||.|||+|.+|+.+++.|...|. +++++|.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 68999999999999999999998 799999885
No 317
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=96.72 E-value=0.0049 Score=58.90 Aligned_cols=66 Identities=24% Similarity=0.298 Sum_probs=45.7
Q ss_pred EEEEcccHHHHHHHHHHHHc-CCeEEE-EcCCCCcH-HHHHhCCCc------------------eecChhhHhhcCCCEE
Q 044593 34 IAVIGFGNFGQFLAKAFARH-HHTLLV-HSRSDHSP-AVRQQLNAP------------------FFADLNDLCELHPDVV 92 (335)
Q Consensus 34 I~IIG~G~mG~siA~~L~~~-G~~V~~-~dr~~~~~-~~a~~~g~~------------------~~~~~~~~~~~~aDvV 92 (335)
|+|+|+|.||..+++++.+. +.+|++ .|.+++.. ..+..+|+. ...+++++. .++|+|
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl-~~vDiV 79 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLL-EKVDIV 79 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHh-hcCCEE
Confidence 68999999999999998764 467654 57665532 333333322 233567776 789999
Q ss_pred EEecCchh
Q 044593 93 LLSTSILS 100 (335)
Q Consensus 93 Ilavp~~~ 100 (335)
+.|+|...
T Consensus 80 ve~Tp~~~ 87 (333)
T TIGR01546 80 VDATPGGI 87 (333)
T ss_pred EECCCCCC
Confidence 99998765
No 318
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.72 E-value=0.0046 Score=62.04 Aligned_cols=69 Identities=23% Similarity=0.217 Sum_probs=50.5
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC-c----HHHHHhCCCceecC-hhhHhhcCCCEEEEecC
Q 044593 28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH-S----PAVRQQLNAPFFAD-LNDLCELHPDVVLLSTS 97 (335)
Q Consensus 28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~-~----~~~a~~~g~~~~~~-~~~~~~~~aDvVIlavp 97 (335)
....++|.|||.|.+|.++|..|.+.|++|+++|+++. . .+..++.|+..... ..+.. ..+|+||+++-
T Consensus 13 ~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~-~~~D~Vv~s~G 87 (480)
T PRK01438 13 DWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLP-EDTDLVVTSPG 87 (480)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCcccc-CCCCEEEECCC
Confidence 34567999999999999999999999999999997653 1 23345668765321 11223 57999999873
No 319
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=96.72 E-value=0.0043 Score=59.30 Aligned_cols=64 Identities=17% Similarity=0.208 Sum_probs=45.6
Q ss_pred cCCCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEec
Q 044593 27 VKSTSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLST 96 (335)
Q Consensus 27 ~~~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlav 96 (335)
.....++|.|||+|-||...++.|.++|. +|++.+|+....... +... ..-++. .++|+||.|+
T Consensus 170 ~~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~~~-~~~~----~~~~~~-~~~DvVIs~t 234 (338)
T PRK00676 170 QKSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLPYR-TVVR----EELSFQ-DPYDVIFFGS 234 (338)
T ss_pred CCccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccchh-hhhh----hhhhcc-cCCCEEEEcC
Confidence 34567899999999999999999999995 799999997532210 0000 001223 6899999974
No 320
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.71 E-value=0.0045 Score=57.63 Aligned_cols=76 Identities=18% Similarity=0.223 Sum_probs=59.2
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593 29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS 107 (335)
Q Consensus 29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~ 107 (335)
..+++|.||| ...+|.-++..|.+.|..|+++.... .++.+.. ++||+||.|+.-.. .+.
T Consensus 155 l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T--------------~nl~~~~-~~ADIvI~AvGk~~---~i~- 215 (282)
T PRK14182 155 PKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRT--------------ADLAGEV-GRADILVAAIGKAE---LVK- 215 (282)
T ss_pred CCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHH-hhCCEEEEecCCcC---ccC-
Confidence 3578999999 68899999999999999999886442 2345556 78999999998543 222
Q ss_pred ccccccCCccEEEEcCCC
Q 044593 108 IPFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 108 l~~~~l~~~~iVvd~~Sv 125 (335)
...+++|++|+|++..
T Consensus 216 --~~~ik~gaiVIDvGin 231 (282)
T PRK14182 216 --GAWVKEGAVVIDVGMN 231 (282)
T ss_pred --HHHcCCCCEEEEeece
Confidence 3468899999999854
No 321
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.70 E-value=0.0057 Score=60.74 Aligned_cols=69 Identities=17% Similarity=0.228 Sum_probs=50.3
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC-cH----HHHHhCCCcee-c-ChhhHhhcCCCEEEEecCc
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH-SP----AVRQQLNAPFF-A-DLNDLCELHPDVVLLSTSI 98 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~-~~----~~a~~~g~~~~-~-~~~~~~~~~aDvVIlavp~ 98 (335)
++.++|.|+|.|.+|..+|..|.+.|++|+++|++.. .. +...+.|+... . ..++.. .++|+||.++-.
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~d~vv~~~g~ 78 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFL-EGVDLVVVSPGV 78 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHh-hcCCEEEECCCC
Confidence 4578999999999999999999999999999999852 22 22334465432 1 122333 679999998754
No 322
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=96.70 E-value=0.011 Score=55.48 Aligned_cols=92 Identities=11% Similarity=0.108 Sum_probs=66.6
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcC--CCEEEEecCchhHHHHHh
Q 044593 30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELH--PDVVLLSTSILSTQSVLK 106 (335)
Q Consensus 30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~--aDvVIlavp~~~~~~vl~ 106 (335)
+..||.|.| .|.+|..+-..+...|++ .++..++..-. ..-.|+..+.+..++. +. .|++++++|...+.++++
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~~~~g~~-~v~~V~p~~~~-~~v~G~~~y~sv~dlp-~~~~~Dlavi~vpa~~v~~~l~ 81 (286)
T TIGR01019 5 KDTKVIVQGITGSQGSFHTEQMLAYGTN-IVGGVTPGKGG-TTVLGLPVFDSVKEAV-EETGANASVIFVPAPFAADAIF 81 (286)
T ss_pred CCCcEEEecCCcHHHHHHHHHHHhCCCC-EEEEECCCCCc-ceecCeeccCCHHHHh-hccCCCEEEEecCHHHHHHHHH
Confidence 456899999 799999999999999987 55555554100 1124777888888886 44 799999999999999999
Q ss_pred hccccccCCccEEEEcCCCC
Q 044593 107 SIPFQRLKRSTLFVDVLSVK 126 (335)
Q Consensus 107 ~l~~~~l~~~~iVvd~~SvK 126 (335)
+... ..-+.+|+-.++..
T Consensus 82 e~~~--~Gvk~avIis~Gf~ 99 (286)
T TIGR01019 82 EAID--AGIELIVCITEGIP 99 (286)
T ss_pred HHHH--CCCCEEEEECCCCC
Confidence 8742 23334555444443
No 323
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=96.70 E-value=0.0051 Score=49.46 Aligned_cols=80 Identities=26% Similarity=0.279 Sum_probs=48.8
Q ss_pred cccHHHHHHHHHHHHc----CCeE-EEEcCC--CCcHHHHHhCCCceecChhhHhhc--CCCEEEEecCchhHHHHHhhc
Q 044593 38 GFGNFGQFLAKAFARH----HHTL-LVHSRS--DHSPAVRQQLNAPFFADLNDLCEL--HPDVVLLSTSILSTQSVLKSI 108 (335)
Q Consensus 38 G~G~mG~siA~~L~~~----G~~V-~~~dr~--~~~~~~a~~~g~~~~~~~~~~~~~--~aDvVIlavp~~~~~~vl~~l 108 (335)
|+|.||+.++..|.+. +++| .+++++ ..........+.....++++++ . +.|+||=|++.....+.+...
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~dvvVE~t~~~~~~~~~~~~ 79 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELI-DDPDIDVVVECTSSEAVAEYYEKA 79 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHH-THTT-SEEEE-SSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHh-cCcCCCEEEECCCchHHHHHHHHH
Confidence 8999999999999886 4565 456887 1111222233455667777776 5 788888888877666655443
Q ss_pred cccccCCccEEEEc
Q 044593 109 PFQRLKRSTLFVDV 122 (335)
Q Consensus 109 ~~~~l~~~~iVvd~ 122 (335)
++.|.-|+..
T Consensus 80 ----L~~G~~VVt~ 89 (117)
T PF03447_consen 80 ----LERGKHVVTA 89 (117)
T ss_dssp ----HHTTCEEEES
T ss_pred ----HHCCCeEEEE
Confidence 4455555543
No 324
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.68 E-value=0.021 Score=56.71 Aligned_cols=66 Identities=15% Similarity=0.131 Sum_probs=48.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCc----HHHHHhCCCcee--cChhhHhhcC-CCEEEEec
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHS----PAVRQQLNAPFF--ADLNDLCELH-PDVVLLST 96 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~----~~~a~~~g~~~~--~~~~~~~~~~-aDvVIlav 96 (335)
.+++|.|+|.|.+|.+.|+.|.+.|++|+++|++... .+...+.|+... .+..+.. .. +|+||.+.
T Consensus 4 ~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-~~~~d~vV~s~ 76 (447)
T PRK02472 4 QNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELL-DEDFDLMVKNP 76 (447)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHh-cCcCCEEEECC
Confidence 4678999999999999999999999999999987532 133445576543 2233333 33 89998865
No 325
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=96.67 E-value=0.0045 Score=59.05 Aligned_cols=76 Identities=20% Similarity=0.234 Sum_probs=59.6
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593 29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS 107 (335)
Q Consensus 29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~ 107 (335)
..+++|.||| ...+|.-+|..|.+.|..|+++.... .++.+.. ++||+||.|+.-... +.
T Consensus 212 l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T--------------~nl~~~~-~~ADIvIsAvGkp~~---v~- 272 (345)
T PLN02897 212 IAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT--------------KDPEQIT-RKADIVIAAAGIPNL---VR- 272 (345)
T ss_pred CCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC--------------CCHHHHH-hhCCEEEEccCCcCc---cC-
Confidence 4689999999 68899999999999999998886432 2345566 799999999986543 22
Q ss_pred ccccccCCccEEEEcCCC
Q 044593 108 IPFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 108 l~~~~l~~~~iVvd~~Sv 125 (335)
...+++|++|+|++..
T Consensus 273 --~d~vk~GavVIDVGin 288 (345)
T PLN02897 273 --GSWLKPGAVVIDVGTT 288 (345)
T ss_pred --HHHcCCCCEEEEcccc
Confidence 2468899999999854
No 326
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.65 E-value=0.0063 Score=57.11 Aligned_cols=75 Identities=15% Similarity=0.327 Sum_probs=57.8
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHHc----CCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHH
Q 044593 29 STSLKIAVIG-FGNFGQFLAKAFARH----HHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQS 103 (335)
Q Consensus 29 ~~~~kI~IIG-~G~mG~siA~~L~~~----G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~ 103 (335)
..+++|.||| ...+|.-+|..|.+. +..|+++.... .++.+.+ ++||+||.|+.-...
T Consensus 159 l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T--------------~~l~~~~-~~ADIvVsAvGkp~~-- 221 (297)
T PRK14168 159 TSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRS--------------KNLARHC-QRADILIVAAGVPNL-- 221 (297)
T ss_pred CCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCC--------------cCHHHHH-hhCCEEEEecCCcCc--
Confidence 4578999999 789999999999987 67888875432 2345566 799999999875543
Q ss_pred HHhhccccccCCccEEEEcCC
Q 044593 104 VLKSIPFQRLKRSTLFVDVLS 124 (335)
Q Consensus 104 vl~~l~~~~l~~~~iVvd~~S 124 (335)
+....+++|++|+|++-
T Consensus 222 ----i~~~~ik~gavVIDvGi 238 (297)
T PRK14168 222 ----VKPEWIKPGATVIDVGV 238 (297)
T ss_pred ----cCHHHcCCCCEEEecCC
Confidence 22356889999999974
No 327
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=96.64 E-value=0.018 Score=56.14 Aligned_cols=68 Identities=19% Similarity=0.184 Sum_probs=44.4
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHHcCC-e----E--EEE--cCCCCcHH-HHHh---------CCCceecChhhHhhcC
Q 044593 29 STSLKIAVIGF-GNFGQFLAKAFARHHH-T----L--LVH--SRSDHSPA-VRQQ---------LNAPFFADLNDLCELH 88 (335)
Q Consensus 29 ~~~~kI~IIG~-G~mG~siA~~L~~~G~-~----V--~~~--dr~~~~~~-~a~~---------~g~~~~~~~~~~~~~~ 88 (335)
...-||+|||+ |.+|+++|..|...|. . | .++ |++.+..+ .+.+ .++....+..+.+ ++
T Consensus 42 ~~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~-kd 120 (387)
T TIGR01757 42 KKTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVF-ED 120 (387)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHh-CC
Confidence 34689999999 9999999999998764 2 3 445 77765432 1111 1222223333444 89
Q ss_pred CCEEEEecC
Q 044593 89 PDVVLLSTS 97 (335)
Q Consensus 89 aDvVIlavp 97 (335)
||+||++.-
T Consensus 121 aDIVVitAG 129 (387)
T TIGR01757 121 ADWALLIGA 129 (387)
T ss_pred CCEEEECCC
Confidence 999999653
No 328
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=96.64 E-value=0.0056 Score=58.85 Aligned_cols=89 Identities=16% Similarity=0.165 Sum_probs=57.7
Q ss_pred CeEEEEc-ccHHHHHHHHHHHHcC-CeEEEE-cCCCCcHH-HHHhC------C----Cc--eecC-hhhHhhcCCCEEEE
Q 044593 32 LKIAVIG-FGNFGQFLAKAFARHH-HTLLVH-SRSDHSPA-VRQQL------N----AP--FFAD-LNDLCELHPDVVLL 94 (335)
Q Consensus 32 ~kI~IIG-~G~mG~siA~~L~~~G-~~V~~~-dr~~~~~~-~a~~~------g----~~--~~~~-~~~~~~~~aDvVIl 94 (335)
+||+|+| .|.||.-+++.|.+.. +++..+ +.++..-+ ..... + +. ...+ ..+.. .++|+|++
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~DvVf~ 79 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVAS-KDVDIVFS 79 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHh-ccCCEEEE
Confidence 5899999 5999999999998876 577655 54432111 11101 0 11 1111 12233 68999999
Q ss_pred ecCchhHHHHHhhccccccCCccEEEEcCCC
Q 044593 95 STSILSTQSVLKSIPFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 95 avp~~~~~~vl~~l~~~~l~~~~iVvd~~Sv 125 (335)
|+|.....++...+ ...|+.|+|.++.
T Consensus 80 a~p~~~s~~~~~~~----~~~G~~VIDlsg~ 106 (341)
T TIGR00978 80 ALPSEVAEEVEPKL----AEAGKPVFSNASN 106 (341)
T ss_pred eCCHHHHHHHHHHH----HHCCCEEEECChh
Confidence 99999877777655 2367889999865
No 329
>PRK05086 malate dehydrogenase; Provisional
Probab=96.60 E-value=0.0053 Score=58.30 Aligned_cols=89 Identities=18% Similarity=0.211 Sum_probs=56.1
Q ss_pred CeEEEEcc-cHHHHHHHHHHHH-c--CCeEEEEcCCCCc----HHHHHhCC--Cce----ecChhhHhhcCCCEEEEecC
Q 044593 32 LKIAVIGF-GNFGQFLAKAFAR-H--HHTLLVHSRSDHS----PAVRQQLN--APF----FADLNDLCELHPDVVLLSTS 97 (335)
Q Consensus 32 ~kI~IIG~-G~mG~siA~~L~~-~--G~~V~~~dr~~~~----~~~a~~~g--~~~----~~~~~~~~~~~aDvVIlavp 97 (335)
|||+|||+ |.+|.+++..+.. . +++++++|+++.. .+. ...+ ... .+++.+.+ +++|+||+|.-
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl-~~~~~~~~i~~~~~~d~~~~l-~~~DiVIitaG 78 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDL-SHIPTAVKIKGFSGEDPTPAL-EGADVVLISAG 78 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhh-hcCCCCceEEEeCCCCHHHHc-CCCCEEEEcCC
Confidence 79999998 9999999988854 2 3589999998653 221 1111 111 23434455 78999999875
Q ss_pred ch----------------hHHHHHhhccccccCCccEEEEcCC
Q 044593 98 IL----------------STQSVLKSIPFQRLKRSTLFVDVLS 124 (335)
Q Consensus 98 ~~----------------~~~~vl~~l~~~~l~~~~iVvd~~S 124 (335)
.. .+.++++.+. . ..++.+|+.+++
T Consensus 79 ~~~~~~~~R~dll~~N~~i~~~ii~~i~-~-~~~~~ivivvsN 119 (312)
T PRK05086 79 VARKPGMDRSDLFNVNAGIVKNLVEKVA-K-TCPKACIGIITN 119 (312)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHH-H-hCCCeEEEEccC
Confidence 31 1334444553 2 356667776654
No 330
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=96.58 E-value=0.006 Score=58.07 Aligned_cols=89 Identities=10% Similarity=0.134 Sum_probs=67.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhhcc
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSIP 109 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~l~ 109 (335)
.++++.|.|+|-.|..+|..++..|.+|.+++.+|-..-.|.-.|..+.+ .++++ ..+|++|.||-...+...= .+
T Consensus 208 aGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~~-m~~Aa-~~gDifiT~TGnkdVi~~e-h~- 283 (420)
T COG0499 208 AGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVMT-MEEAA-KTGDIFVTATGNKDVIRKE-HF- 283 (420)
T ss_pred cCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEEE-hHHhh-hcCCEEEEccCCcCccCHH-HH-
Confidence 56889999999999999999999999999999998544336666877654 45555 7899999999866532211 11
Q ss_pred ccccCCccEEEEcC
Q 044593 110 FQRLKRSTLFVDVL 123 (335)
Q Consensus 110 ~~~l~~~~iVvd~~ 123 (335)
..++.++++.+.+
T Consensus 284 -~~MkDgaIl~N~G 296 (420)
T COG0499 284 -EKMKDGAILANAG 296 (420)
T ss_pred -HhccCCeEEeccc
Confidence 2367888988876
No 331
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.57 E-value=0.0066 Score=56.69 Aligned_cols=76 Identities=16% Similarity=0.266 Sum_probs=58.6
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHHc----CCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHH
Q 044593 29 STSLKIAVIG-FGNFGQFLAKAFARH----HHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQS 103 (335)
Q Consensus 29 ~~~~kI~IIG-~G~mG~siA~~L~~~----G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~ 103 (335)
..++++.||| ...+|.-++..|.++ +..|+++.... .++.+.+ ++||+||.|+.-...
T Consensus 151 l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T--------------~~l~~~~-~~ADIvV~AvG~p~~-- 213 (287)
T PRK14181 151 LHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQS--------------ENLTEIL-KTADIIIAAIGVPLF-- 213 (287)
T ss_pred CCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCC--------------CCHHHHH-hhCCEEEEccCCcCc--
Confidence 4579999999 688999999999988 67888876432 2345566 789999999986542
Q ss_pred HHhhccccccCCccEEEEcCCC
Q 044593 104 VLKSIPFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 104 vl~~l~~~~l~~~~iVvd~~Sv 125 (335)
+. ...+++|++|+|++..
T Consensus 214 -i~---~~~ik~GavVIDvGin 231 (287)
T PRK14181 214 -IK---EEMIAEKAVIVDVGTS 231 (287)
T ss_pred -cC---HHHcCCCCEEEEeccc
Confidence 22 3468899999999854
No 332
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.57 E-value=0.0084 Score=62.66 Aligned_cols=69 Identities=22% Similarity=0.286 Sum_probs=51.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC---------------------cHHHHHhCCCceec--------
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH---------------------SPAVRQQLNAPFFA-------- 79 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~---------------------~~~~a~~~g~~~~~-------- 79 (335)
.+.++|+|||.|..|.+.|..|++.|++|+++|+.+. ..+.+.+.|+.+..
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~i 404 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKDI 404 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCcC
Confidence 3578999999999999999999999999999998753 12334556764321
Q ss_pred ChhhHhhcCCCEEEEecCc
Q 044593 80 DLNDLCELHPDVVLLSTSI 98 (335)
Q Consensus 80 ~~~~~~~~~aDvVIlavp~ 98 (335)
+..++. .++|.||+++-.
T Consensus 405 ~~~~~~-~~~DavilAtGa 422 (654)
T PRK12769 405 SLESLL-EDYDAVFVGVGT 422 (654)
T ss_pred CHHHHH-hcCCEEEEeCCC
Confidence 223343 578999998854
No 333
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.56 E-value=0.0065 Score=58.83 Aligned_cols=89 Identities=17% Similarity=0.207 Sum_probs=58.0
Q ss_pred CCeEEEEc-ccHHHHHHHH-HHHHcCCe---EEEEcCCCCcHHH--HHhCCCcee--cChhhHhhcCCCEEEEecCchhH
Q 044593 31 SLKIAVIG-FGNFGQFLAK-AFARHHHT---LLVHSRSDHSPAV--RQQLNAPFF--ADLNDLCELHPDVVLLSTSILST 101 (335)
Q Consensus 31 ~~kI~IIG-~G~mG~siA~-~L~~~G~~---V~~~dr~~~~~~~--a~~~g~~~~--~~~~~~~~~~aDvVIlavp~~~~ 101 (335)
|++|+||| .|.+|.-+.+ .|.+..+. +..+.......+. ......... .+..++ .++|++|+|+|....
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g~~~~v~~~~~~~~~--~~~Divf~a~~~~~s 78 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGKEGTLQDAFDIDAL--KKLDIIITCQGGDYT 78 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCCCcceEEecCChhHh--cCCCEEEECCCHHHH
Confidence 37999999 5999999998 66666665 6655543221111 111111111 223333 689999999999988
Q ss_pred HHHHhhccccccCCc--cEEEEcCCC
Q 044593 102 QSVLKSIPFQRLKRS--TLFVDVLSV 125 (335)
Q Consensus 102 ~~vl~~l~~~~l~~~--~iVvd~~Sv 125 (335)
.++...+. +.| ++|+|.+|.
T Consensus 79 ~~~~~~~~----~aG~~~~VID~Ss~ 100 (369)
T PRK06598 79 NEVYPKLR----AAGWQGYWIDAAST 100 (369)
T ss_pred HHHHHHHH----hCCCCeEEEECChH
Confidence 88887763 356 679999864
No 334
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=96.54 E-value=0.0093 Score=56.29 Aligned_cols=62 Identities=18% Similarity=0.244 Sum_probs=42.7
Q ss_pred EEcccHHHHHHHHHHHHcCC--eEEEEcCCCCcHH-HHHhC---------CCceecChhhHhhcCCCEEEEecCc
Q 044593 36 VIGFGNFGQFLAKAFARHHH--TLLVHSRSDHSPA-VRQQL---------NAPFFADLNDLCELHPDVVLLSTSI 98 (335)
Q Consensus 36 IIG~G~mG~siA~~L~~~G~--~V~~~dr~~~~~~-~a~~~---------g~~~~~~~~~~~~~~aDvVIlavp~ 98 (335)
|||+|.+|+++|..|...+. ++.++|++++..+ .+.++ ......+..+.+ ++||+||++.-.
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~-~daDivVitag~ 74 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDC-KDADLVVITAGA 74 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHH-CCCCEEEECCCC
Confidence 79999999999999998875 7999999876432 22221 112222222344 899999997643
No 335
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.50 E-value=0.0083 Score=54.26 Aligned_cols=36 Identities=19% Similarity=0.207 Sum_probs=31.8
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCC
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSD 64 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~ 64 (335)
.+..||.|||+|.+|+.+|..|...|. +++++|.+.
T Consensus 19 L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 19 LKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 346799999999999999999999997 888898764
No 336
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=96.49 E-value=0.009 Score=57.39 Aligned_cols=36 Identities=19% Similarity=0.274 Sum_probs=32.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCC
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSD 64 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~ 64 (335)
.+..||.|||+|.+|+.+|..|...|. +++++|.+.
T Consensus 22 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 22 LREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 356799999999999999999999998 899999874
No 337
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=96.48 E-value=0.0094 Score=56.60 Aligned_cols=89 Identities=21% Similarity=0.235 Sum_probs=59.7
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHHcCC--e-EEEE--cCCCCcH-HHHHhCCCcee---cChhhHhhcCCCEEEEecCchh
Q 044593 31 SLKIAVIG-FGNFGQFLAKAFARHHH--T-LLVH--SRSDHSP-AVRQQLNAPFF---ADLNDLCELHPDVVLLSTSILS 100 (335)
Q Consensus 31 ~~kI~IIG-~G~mG~siA~~L~~~G~--~-V~~~--dr~~~~~-~~a~~~g~~~~---~~~~~~~~~~aDvVIlavp~~~ 100 (335)
+++|+|+| .|.+|..+...|.+..+ + +.++ .|+.... -.+....+..- .+..+. +++|++|.|.+.+.
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~~v~~~~~~~~~~--~~~Divf~~ag~~~ 78 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSIGVPEDAADEFVF--SDVDIVFFAAGGSV 78 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCccccCcccccccccc--ccCCEEEEeCchHH
Confidence 47899999 69999999999999654 2 3333 4443222 11222212211 222222 68999999999998
Q ss_pred HHHHHhhccccccCCccEEEEcCCC
Q 044593 101 TQSVLKSIPFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 101 ~~~vl~~l~~~~l~~~~iVvd~~Sv 125 (335)
..++...+. +.|++|+|.+|.
T Consensus 79 s~~~~p~~~----~~G~~VIdnsSa 99 (334)
T COG0136 79 SKEVEPKAA----EAGCVVIDNSSA 99 (334)
T ss_pred HHHHHHHHH----HcCCEEEeCCcc
Confidence 888887763 478999999885
No 338
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.48 E-value=0.01 Score=61.88 Aligned_cols=69 Identities=26% Similarity=0.293 Sum_probs=51.9
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC---------------------cHHHHHhCCCcee--------c
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH---------------------SPAVRQQLNAPFF--------A 79 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~---------------------~~~~a~~~g~~~~--------~ 79 (335)
.+.+||+|||.|..|.+.|..|++.|++|++|++.+. ..+...+.|+.+. .
T Consensus 308 ~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~ 387 (639)
T PRK12809 308 PRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDI 387 (639)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCcC
Confidence 3578999999999999999999999999999998863 1234455666431 1
Q ss_pred ChhhHhhcCCCEEEEecCc
Q 044593 80 DLNDLCELHPDVVLLSTSI 98 (335)
Q Consensus 80 ~~~~~~~~~aDvVIlavp~ 98 (335)
+..++. .+.|.||+++-.
T Consensus 388 ~~~~l~-~~~DaV~latGa 405 (639)
T PRK12809 388 TFSDLT-SEYDAVFIGVGT 405 (639)
T ss_pred CHHHHH-hcCCEEEEeCCC
Confidence 233444 578999998864
No 339
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=96.46 E-value=0.0048 Score=48.98 Aligned_cols=81 Identities=12% Similarity=0.145 Sum_probs=54.8
Q ss_pred HHHHHHHHHHcCCeEEEEcCCCCcHHHHH---hCCCceecChhhHhhcCCCEEEEecCchhHHH-HHhhccccccCCccE
Q 044593 43 GQFLAKAFARHHHTLLVHSRSDHSPAVRQ---QLNAPFFADLNDLCELHPDVVLLSTSILSTQS-VLKSIPFQRLKRSTL 118 (335)
Q Consensus 43 G~siA~~L~~~G~~V~~~dr~~~~~~~a~---~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~-vl~~l~~~~l~~~~i 118 (335)
+--++..|.+.|.+|.+||+.-....... ..++...+++.+.+ +++|+||++|+-..... -.+.+. ..++++.+
T Consensus 19 ~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~D~vvl~t~h~~f~~l~~~~~~-~~~~~~~~ 96 (106)
T PF03720_consen 19 ALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEAL-KGADAVVLATDHDEFRELDWEEIA-KLMRKPPV 96 (106)
T ss_dssp HHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHH-TTESEEEESS--GGGGCCGHHHHH-HHSCSSEE
T ss_pred HHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHh-cCCCEEEEEecCHHHhccCHHHHH-HhcCCCCE
Confidence 45688999999999999998865444222 24677777888877 89999999999877554 122332 23457889
Q ss_pred EEEcCCC
Q 044593 119 FVDVLSV 125 (335)
Q Consensus 119 Vvd~~Sv 125 (335)
|+|+-++
T Consensus 97 iiD~~~~ 103 (106)
T PF03720_consen 97 IIDGRNI 103 (106)
T ss_dssp EEESSST
T ss_pred EEECccc
Confidence 9998654
No 340
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=96.45 E-value=0.0056 Score=57.30 Aligned_cols=91 Identities=16% Similarity=0.225 Sum_probs=63.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhC-CCc---eec---ChhhHhhcCCCEEEEec--CchhH
Q 044593 31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQL-NAP---FFA---DLNDLCELHPDVVLLST--SILST 101 (335)
Q Consensus 31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~-g~~---~~~---~~~~~~~~~aDvVIlav--p~~~~ 101 (335)
.-||.|||.|.+|.--|+.....|.+|++.|+|.+.+...... +.. ..+ .+++.+ .++|+||=++ |....
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v-~~aDlvIgaVLIpgaka 246 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAV-KKADLVIGAVLIPGAKA 246 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHh-hhccEEEEEEEecCCCC
Confidence 4689999999999999999888899999999998766533332 222 122 345555 7899999776 33332
Q ss_pred HH-HHhhccccccCCccEEEEcC
Q 044593 102 QS-VLKSIPFQRLKRSTLFVDVL 123 (335)
Q Consensus 102 ~~-vl~~l~~~~l~~~~iVvd~~ 123 (335)
.. +.+++. ..++||.+|+|++
T Consensus 247 PkLvt~e~v-k~MkpGsVivDVA 268 (371)
T COG0686 247 PKLVTREMV-KQMKPGSVIVDVA 268 (371)
T ss_pred ceehhHHHH-HhcCCCcEEEEEE
Confidence 22 233332 3578999999986
No 341
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.41 E-value=0.011 Score=53.03 Aligned_cols=35 Identities=26% Similarity=0.329 Sum_probs=31.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCC
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRS 63 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~ 63 (335)
.+..+|+|||+|.+|+.++..|...|. +++++|.+
T Consensus 26 L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 26 LKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 356789999999999999999999997 69999988
No 342
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=96.39 E-value=0.0071 Score=55.25 Aligned_cols=36 Identities=14% Similarity=0.252 Sum_probs=32.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCC
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSD 64 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~ 64 (335)
.+..||.|+|+|.+|+.++..|...|. +++++|.+.
T Consensus 22 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 22 LKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 456799999999999999999999997 889999875
No 343
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.36 E-value=0.012 Score=59.50 Aligned_cols=65 Identities=28% Similarity=0.261 Sum_probs=46.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCc--HHHHHhC--CCceec--ChhhHhhcCCCEEEEe
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHS--PAVRQQL--NAPFFA--DLNDLCELHPDVVLLS 95 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~--~~~a~~~--g~~~~~--~~~~~~~~~aDvVIla 95 (335)
.+++|.|+|.|..|.++|+.|.+.|++|+++|.+... .+...+. |+.... ...+.+ .++|+||++
T Consensus 6 ~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~-~~~d~vv~s 76 (498)
T PRK02006 6 QGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALL-DGVDLVALS 76 (498)
T ss_pred CCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHh-cCCCEEEEC
Confidence 4578999999999999999999999999999976532 2223344 443321 123344 689999996
No 344
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.36 E-value=0.013 Score=56.58 Aligned_cols=87 Identities=18% Similarity=0.180 Sum_probs=59.1
Q ss_pred eEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHHHHHh-CCCceecCh-h--------hHhh-cCCCEEEEecCchh
Q 044593 33 KIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPAVRQQ-LNAPFFADL-N--------DLCE-LHPDVVLLSTSILS 100 (335)
Q Consensus 33 kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~~a~~-~g~~~~~~~-~--------~~~~-~~aDvVIlavp~~~ 100 (335)
++.|+|+|.||...+..++..|. +|++.|++++.++.|++ .|.....+. . +... ..+|++|-|+....
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~~~ 250 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGSPP 250 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCCHH
Confidence 89999999999999888888885 78888999999998988 454422221 1 1110 25899999998433
Q ss_pred HHHHHhhccccccCCccEEEEcC
Q 044593 101 TQSVLKSIPFQRLKRSTLFVDVL 123 (335)
Q Consensus 101 ~~~vl~~l~~~~l~~~~iVvd~~ 123 (335)
.+.+.. ..++++..|+-++
T Consensus 251 ---~~~~ai-~~~r~gG~v~~vG 269 (350)
T COG1063 251 ---ALDQAL-EALRPGGTVVVVG 269 (350)
T ss_pred ---HHHHHH-HHhcCCCEEEEEe
Confidence 222221 2355666666554
No 345
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=96.35 E-value=0.013 Score=53.68 Aligned_cols=35 Identities=20% Similarity=0.308 Sum_probs=31.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCC
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSD 64 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~ 64 (335)
+..||+|||+|.+|+.++..|...|. +++++|.+.
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 46799999999999999999999997 889998774
No 346
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=96.33 E-value=0.0084 Score=53.87 Aligned_cols=64 Identities=27% Similarity=0.256 Sum_probs=49.2
Q ss_pred EEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCc--HHHHHhCCCce----ecC---hhhHhhcCCCEEEEecCc
Q 044593 34 IAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHS--PAVRQQLNAPF----FAD---LNDLCELHPDVVLLSTSI 98 (335)
Q Consensus 34 I~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~--~~~a~~~g~~~----~~~---~~~~~~~~aDvVIlavp~ 98 (335)
|+|+| .|.+|+.++.+|.+.+++|.+.-|++.. .+...+.|+.. ..+ +.+++ +++|.||++++.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al-~g~d~v~~~~~~ 74 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAAL-KGVDAVFSVTPP 74 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHH-TTCSEEEEESSC
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHH-cCCceEEeecCc
Confidence 78999 5999999999999999999999998743 34455677753 222 33345 799999999994
No 347
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.33 E-value=0.0084 Score=57.29 Aligned_cols=65 Identities=15% Similarity=0.137 Sum_probs=44.8
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHHcC-------CeEEEEcCCCCc--HHHHHhC-----------CCceecChhhHhhcCC
Q 044593 31 SLKIAVIGF-GNFGQFLAKAFARHH-------HTLLVHSRSDHS--PAVRQQL-----------NAPFFADLNDLCELHP 89 (335)
Q Consensus 31 ~~kI~IIG~-G~mG~siA~~L~~~G-------~~V~~~dr~~~~--~~~a~~~-----------g~~~~~~~~~~~~~~a 89 (335)
..||+|+|+ |.+|++++..|...+ .+|.++|+++.. .+ .... .+....+..+.+ ++|
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~-g~~~Dl~d~~~~~~~~~~~~~~~~~~l-~~a 79 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALE-GVVMELQDCAFPLLKSVVATTDPEEAF-KDV 79 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCcccccc-ceeeehhhccccccCCceecCCHHHHh-CCC
Confidence 468999998 999999999998854 489999996531 11 1111 111234544555 899
Q ss_pred CEEEEecC
Q 044593 90 DVVLLSTS 97 (335)
Q Consensus 90 DvVIlavp 97 (335)
|+||++.-
T Consensus 80 DiVI~tAG 87 (325)
T cd01336 80 DVAILVGA 87 (325)
T ss_pred CEEEEeCC
Confidence 99998763
No 348
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.33 E-value=0.026 Score=53.61 Aligned_cols=81 Identities=20% Similarity=0.290 Sum_probs=61.5
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHc---CCeEE-EEcCCCCc-HHHHHhCCC---ceecChhhHhh-cCCCEEEEecCc
Q 044593 28 KSTSLKIAVIGFGNFGQFLAKAFARH---HHTLL-VHSRSDHS-PAVRQQLNA---PFFADLNDLCE-LHPDVVLLSTSI 98 (335)
Q Consensus 28 ~~~~~kI~IIG~G~mG~siA~~L~~~---G~~V~-~~dr~~~~-~~~a~~~g~---~~~~~~~~~~~-~~aDvVIlavp~ 98 (335)
.+..-|+||+|+|.|++-++++|.-. +|.|+ +.||+.+. .+.|.+.++ ..+.+.++++. ..+|+|.+++|.
T Consensus 3 ~s~~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~~ 82 (351)
T KOG2741|consen 3 DSATIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTPN 82 (351)
T ss_pred CCceeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCCCCccccCHHHHhcCCCcCEEEeCCCC
Confidence 34567999999999999999998653 67765 56887653 567888887 35677888872 356999999999
Q ss_pred hhHHHHHhhc
Q 044593 99 LSTQSVLKSI 108 (335)
Q Consensus 99 ~~~~~vl~~l 108 (335)
.+-.+++..+
T Consensus 83 ~qH~evv~l~ 92 (351)
T KOG2741|consen 83 PQHYEVVMLA 92 (351)
T ss_pred ccHHHHHHHH
Confidence 8877766544
No 349
>PRK06153 hypothetical protein; Provisional
Probab=96.33 E-value=0.01 Score=57.58 Aligned_cols=34 Identities=21% Similarity=0.446 Sum_probs=31.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCC
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRS 63 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~ 63 (335)
+..+|+|||+|..|+.++..|++.|. +++++|.+
T Consensus 175 ~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 175 EGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred hhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 45799999999999999999999997 88999876
No 350
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=96.31 E-value=0.012 Score=56.21 Aligned_cols=89 Identities=18% Similarity=0.179 Sum_probs=56.8
Q ss_pred eEEEEcccHHHHHHHHHHHHcC----CeEEEE-cCCCC-cHHHHHhCCC-----------------------ce--ecCh
Q 044593 33 KIAVIGFGNFGQFLAKAFARHH----HTLLVH-SRSDH-SPAVRQQLNA-----------------------PF--FADL 81 (335)
Q Consensus 33 kI~IIG~G~mG~siA~~L~~~G----~~V~~~-dr~~~-~~~~a~~~g~-----------------------~~--~~~~ 81 (335)
||+|+|+|.||..+.+.+.+.+ ++|..+ |.... ......+.+. .. ..++
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~p 80 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSPTP 80 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcCCh
Confidence 6999999999999999988754 676554 43322 2222222211 01 1244
Q ss_pred hhHhh--cCCCEEEEecCchhHHHHHhhccccccCCccEEEEcCCC
Q 044593 82 NDLCE--LHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 82 ~~~~~--~~aDvVIlavp~~~~~~vl~~l~~~~l~~~~iVvd~~Sv 125 (335)
.++.+ .++|+||.|++.....+.... +++.|+.++++++-
T Consensus 81 ~~~~w~~~gvDiVie~tG~~~s~e~a~~----~l~aGa~~V~~SaP 122 (325)
T TIGR01532 81 EALPWRALGVDLVLDCTGVYGNREQGER----HIRAGAKRVLFSHP 122 (325)
T ss_pred hhccccccCCCEEEEccchhccHHHHHH----HHHcCCeEEEecCC
Confidence 44432 479999999998876665543 35678888888753
No 351
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=96.30 E-value=0.028 Score=53.63 Aligned_cols=89 Identities=18% Similarity=0.197 Sum_probs=62.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHHHHHhCCCceec-----ChhhHhh--cCCCEEEEecCchh-
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPAVRQQLNAPFFA-----DLNDLCE--LHPDVVLLSTSILS- 100 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~~a~~~g~~~~~-----~~~~~~~--~~aDvVIlavp~~~- 100 (335)
...+|.|+|+|.+|...+..++..|. +|++.+++++..+.++++|+...- +..+... ...|+||-|+....
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~~~~ 248 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGHPSS 248 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCCHHH
Confidence 46799999999999999999898998 688999999888889999875321 1222210 13788888877532
Q ss_pred HHHHHhhccccccCCccEEEEcC
Q 044593 101 TQSVLKSIPFQRLKRSTLFVDVL 123 (335)
Q Consensus 101 ~~~vl~~l~~~~l~~~~iVvd~~ 123 (335)
+...++- ++++..++.++
T Consensus 249 ~~~~~~~-----l~~~G~iv~~G 266 (343)
T PRK09880 249 INTCLEV-----TRAKGVMVQVG 266 (343)
T ss_pred HHHHHHH-----hhcCCEEEEEc
Confidence 3333333 44566666665
No 352
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=96.29 E-value=0.024 Score=56.28 Aligned_cols=68 Identities=13% Similarity=0.151 Sum_probs=47.0
Q ss_pred CeEEEEcccHH-HHHHHHHHHHc-----CCeEEEEcCCCCcHHHH--------HhCCC----ceecChhhHhhcCCCEEE
Q 044593 32 LKIAVIGFGNF-GQFLAKAFARH-----HHTLLVHSRSDHSPAVR--------QQLNA----PFFADLNDLCELHPDVVL 93 (335)
Q Consensus 32 ~kI~IIG~G~m-G~siA~~L~~~-----G~~V~~~dr~~~~~~~a--------~~~g~----~~~~~~~~~~~~~aDvVI 93 (335)
|||+|||.|.. +-.+...|... +-+|+.+|.+++..+.. .+.|. ..++|..+++ ++||+||
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~eAl-~gADfVi 79 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEAF-TDADFVF 79 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEEEECCHHHHh-CCCCEEE
Confidence 79999999874 22344444433 24899999999765432 22232 3578888888 8999999
Q ss_pred EecCchh
Q 044593 94 LSTSILS 100 (335)
Q Consensus 94 lavp~~~ 100 (335)
.+.-...
T Consensus 80 ~~irvGg 86 (437)
T cd05298 80 AQIRVGG 86 (437)
T ss_pred EEeeeCC
Confidence 9886654
No 353
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.27 E-value=0.015 Score=54.43 Aligned_cols=76 Identities=20% Similarity=0.324 Sum_probs=58.1
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHHc----CCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHH
Q 044593 29 STSLKIAVIG-FGNFGQFLAKAFARH----HHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQS 103 (335)
Q Consensus 29 ~~~~kI~IIG-~G~mG~siA~~L~~~----G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~ 103 (335)
..+++|.||| ...+|.-++..|.+. +..|+++.... .++.+.+ ++||+||.|+.-...
T Consensus 155 l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T--------------~nl~~~~-~~ADIvIsAvGkp~~-- 217 (293)
T PRK14185 155 TSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS--------------KNLKKEC-LEADIIIAALGQPEF-- 217 (293)
T ss_pred CCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC--------------CCHHHHH-hhCCEEEEccCCcCc--
Confidence 4578999999 688999999999987 56888775432 2345566 789999999986543
Q ss_pred HHhhccccccCCccEEEEcCCC
Q 044593 104 VLKSIPFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 104 vl~~l~~~~l~~~~iVvd~~Sv 125 (335)
+. ...+++|++|+|++..
T Consensus 218 -i~---~~~vk~gavVIDvGin 235 (293)
T PRK14185 218 -VK---ADMVKEGAVVIDVGTT 235 (293)
T ss_pred -cC---HHHcCCCCEEEEecCc
Confidence 22 2458899999999854
No 354
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.26 E-value=0.017 Score=57.96 Aligned_cols=69 Identities=28% Similarity=0.353 Sum_probs=51.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC---------------------cHHHHHhCCCceec--------C
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH---------------------SPAVRQQLNAPFFA--------D 80 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~---------------------~~~~a~~~g~~~~~--------~ 80 (335)
+.++|.|||.|..|.+.|..|++.|++|+++++.+. ..+.+.+.|+.... .
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~ 219 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRDIS 219 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCccC
Confidence 568999999999999999999999999999998753 12345666764321 1
Q ss_pred hhhHhhcCCCEEEEecCch
Q 044593 81 LNDLCELHPDVVLLSTSIL 99 (335)
Q Consensus 81 ~~~~~~~~aDvVIlavp~~ 99 (335)
..++. ..+|.||+|+-..
T Consensus 220 ~~~~~-~~~D~vilAtGa~ 237 (467)
T TIGR01318 220 LDDLL-EDYDAVFLGVGTY 237 (467)
T ss_pred HHHHH-hcCCEEEEEeCCC
Confidence 23333 4689999988643
No 355
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=96.25 E-value=0.043 Score=50.39 Aligned_cols=104 Identities=20% Similarity=0.156 Sum_probs=68.0
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHHcC-CeE-EEEcCCCCcH--HHH------HhCCCceecChhhHhhcCCCEEEEecCc
Q 044593 30 TSLKIAVIGF-GNFGQFLAKAFARHH-HTL-LVHSRSDHSP--AVR------QQLNAPFFADLNDLCELHPDVVLLSTSI 98 (335)
Q Consensus 30 ~~~kI~IIG~-G~mG~siA~~L~~~G-~~V-~~~dr~~~~~--~~a------~~~g~~~~~~~~~~~~~~aDvVIlavp~ 98 (335)
++|||+|+|+ |.||..+.+.+.+.. +++ -++|+.+... ..+ ...|+...+++.... .++|++|=-|-+
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~-~~~DV~IDFT~P 79 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVK-ADADVLIDFTTP 79 (266)
T ss_pred CCceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCceeecchhhcc-cCCCEEEECCCc
Confidence 3689999996 999999999998875 564 5678876422 111 223455555555544 789999976666
Q ss_pred hhHHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhC
Q 044593 99 LSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYL 137 (335)
Q Consensus 99 ~~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l 137 (335)
..+.+.++.... .+-.+|+=+++....-.+.+++..
T Consensus 80 ~~~~~~l~~~~~---~~~~lVIGTTGf~~e~~~~l~~~a 115 (266)
T COG0289 80 EATLENLEFALE---HGKPLVIGTTGFTEEQLEKLREAA 115 (266)
T ss_pred hhhHHHHHHHHH---cCCCeEEECCCCCHHHHHHHHHHH
Confidence 766666665421 123467777666665566665543
No 356
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=96.25 E-value=0.027 Score=53.94 Aligned_cols=69 Identities=19% Similarity=0.299 Sum_probs=49.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcC---CCCcHHHHHhCCCceecChh----h--HhhcCCCEEEEecCch
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSR---SDHSPAVRQQLNAPFFADLN----D--LCELHPDVVLLSTSIL 99 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr---~~~~~~~a~~~g~~~~~~~~----~--~~~~~aDvVIlavp~~ 99 (335)
.+.+|.|+|+|.+|...+..++..|.+|+++++ +++..+.+++.|+......+ + .. ..+|+||-|+...
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~-~~~d~vid~~g~~ 249 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLV-GEFDLIIEATGVP 249 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhc-CCCCEEEECcCCH
Confidence 467899999999999999999999999999998 45566778888875321110 0 11 3467777777643
No 357
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.24 E-value=0.014 Score=54.52 Aligned_cols=76 Identities=21% Similarity=0.245 Sum_probs=57.9
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHH----cCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHH
Q 044593 29 STSLKIAVIG-FGNFGQFLAKAFAR----HHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQS 103 (335)
Q Consensus 29 ~~~~kI~IIG-~G~mG~siA~~L~~----~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~ 103 (335)
..++++.||| ...+|.-++..|.+ .+..|+.+..+. .++.+.+ ++||+||.|++...+
T Consensus 155 l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t--------------~~l~~~~-~~ADIVI~AvG~p~l-- 217 (286)
T PRK14184 155 PAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT--------------PDLAEEC-READFLFVAIGRPRF-- 217 (286)
T ss_pred CCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc--------------hhHHHHH-HhCCEEEEecCCCCc--
Confidence 3578999999 68899999999998 677888887543 2345566 789999999975543
Q ss_pred HHhhccccccCCccEEEEcCCC
Q 044593 104 VLKSIPFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 104 vl~~l~~~~l~~~~iVvd~~Sv 125 (335)
+. ...+++|++|+|++-.
T Consensus 218 -i~---~~~vk~GavVIDVGi~ 235 (286)
T PRK14184 218 -VT---ADMVKPGAVVVDVGIN 235 (286)
T ss_pred -CC---HHHcCCCCEEEEeeee
Confidence 22 2457899999999743
No 358
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.23 E-value=0.016 Score=54.43 Aligned_cols=75 Identities=17% Similarity=0.250 Sum_probs=56.8
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHHc----CCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHH
Q 044593 29 STSLKIAVIG-FGNFGQFLAKAFARH----HHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQS 103 (335)
Q Consensus 29 ~~~~kI~IIG-~G~mG~siA~~L~~~----G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~ 103 (335)
-.+++|.||| ...+|.-+|..|.+. +..|+++.... .++.+.. ++||+||.|+.-..
T Consensus 155 l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T--------------~~l~~~~-~~ADIvIsAvGkp~--- 216 (297)
T PRK14167 155 TEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRT--------------DDLAAKT-RRADIVVAAAGVPE--- 216 (297)
T ss_pred CCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCC--------------CCHHHHH-hhCCEEEEccCCcC---
Confidence 4578999999 688999999999887 67888875432 2345556 79999999986544
Q ss_pred HHhhccccccCCccEEEEcCC
Q 044593 104 VLKSIPFQRLKRSTLFVDVLS 124 (335)
Q Consensus 104 vl~~l~~~~l~~~~iVvd~~S 124 (335)
++. ...+++|++|+|++-
T Consensus 217 ~i~---~~~ik~gaiVIDvGi 234 (297)
T PRK14167 217 LID---GSMLSEGATVIDVGI 234 (297)
T ss_pred ccC---HHHcCCCCEEEEccc
Confidence 222 246889999999974
No 359
>PRK08223 hypothetical protein; Validated
Probab=96.22 E-value=0.017 Score=54.11 Aligned_cols=35 Identities=17% Similarity=0.272 Sum_probs=31.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCC
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSD 64 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~ 64 (335)
+..+|.|||+|.+|+.++..|+..|. ++.++|.+.
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 46799999999999999999999997 889998875
No 360
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=96.21 E-value=0.015 Score=56.71 Aligned_cols=35 Identities=23% Similarity=0.226 Sum_probs=31.9
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCC
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRS 63 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~ 63 (335)
.+..||.|||+|.+|+.++..|...|. +++++|.+
T Consensus 133 l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 133 LLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 356799999999999999999999997 79999987
No 361
>PRK08328 hypothetical protein; Provisional
Probab=96.20 E-value=0.018 Score=52.28 Aligned_cols=36 Identities=25% Similarity=0.359 Sum_probs=32.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCC
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDH 65 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~ 65 (335)
+..||+|||+|.+|+.++..|...|. +++++|.+.-
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~v 62 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTP 62 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 46789999999999999999999997 7999998753
No 362
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=96.19 E-value=0.014 Score=54.76 Aligned_cols=106 Identities=20% Similarity=0.139 Sum_probs=71.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHHc--CCeEEEEcCCCCcHHHHHh-------------------CCCceecChhhHhhcCC
Q 044593 31 SLKIAVIGFGNFGQFLAKAFARH--HHTLLVHSRSDHSPAVRQQ-------------------LNAPFFADLNDLCELHP 89 (335)
Q Consensus 31 ~~kI~IIG~G~mG~siA~~L~~~--G~~V~~~dr~~~~~~~a~~-------------------~g~~~~~~~~~~~~~~a 89 (335)
++||.-||+|.+|+-....++-+ ..+|+++|.+...+..... .+..+.++.+..+ .++
T Consensus 1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai-~ea 79 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAI-KEA 79 (481)
T ss_pred CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHh-hhc
Confidence 47899999999999876655543 2478899988765542221 1223456777777 899
Q ss_pred CEEEEecCch---------------hHHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCC
Q 044593 90 DVVLLSTSIL---------------STQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLP 138 (335)
Q Consensus 90 DvVIlavp~~---------------~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~ 138 (335)
|+|+++|... .++...+.++ +.-....+|+.-+++.....+.+...+.
T Consensus 80 dlvfisvntptkt~g~gkg~aadlky~es~ar~ia-~~s~~~kivvekstvpv~aaesi~~il~ 142 (481)
T KOG2666|consen 80 DLVFISVNTPTKTYGLGKGKAADLKYWESAARMIA-DVSVSDKIVVEKSTVPVKAAESIEKILN 142 (481)
T ss_pred ceEEEEecCCcccccCCCCcccchhHHHHHHHHHH-HhccCCeEEEeeccccchHHHHHHHHHh
Confidence 9999987432 2455555554 3445667999888876666666766664
No 363
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=96.19 E-value=0.012 Score=52.02 Aligned_cols=35 Identities=23% Similarity=0.313 Sum_probs=31.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCC
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSD 64 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~ 64 (335)
+..||.|||+|.+|+.+++.|...|. +++++|.+.
T Consensus 18 ~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ 53 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL 53 (198)
T ss_pred hhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 45789999999999999999999997 799999874
No 364
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.17 E-value=0.051 Score=54.01 Aligned_cols=66 Identities=18% Similarity=0.158 Sum_probs=48.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCc--HHHHHh--CCCceec-C-hhhHhhcCCCEEEEec
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHS--PAVRQQ--LNAPFFA-D-LNDLCELHPDVVLLST 96 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~--~~~a~~--~g~~~~~-~-~~~~~~~~aDvVIlav 96 (335)
..++|.|+|.|..|.+.|+.|.+.|++|+++|.++.. .....+ .|+.... . ..... .++|+||.+.
T Consensus 4 ~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~-~~~d~vv~sp 75 (445)
T PRK04308 4 QNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALD-NGFDILALSP 75 (445)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHH-hCCCEEEECC
Confidence 4679999999999999999999999999999987643 222232 3665422 1 22333 5799999865
No 365
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=96.14 E-value=0.038 Score=51.18 Aligned_cols=47 Identities=19% Similarity=0.223 Sum_probs=40.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCe-EEEEcCCCCcHHHHHhCCCc
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHHT-LLVHSRSDHSPAVRQQLNAP 76 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~~-V~~~dr~~~~~~~a~~~g~~ 76 (335)
...+|.|+|.|.+|...+..++..|.+ |++.+++++..+.++++|+.
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~ 167 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGAT 167 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCc
Confidence 467899999999999999999999986 88889888888888888874
No 366
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.12 E-value=0.022 Score=59.52 Aligned_cols=70 Identities=26% Similarity=0.320 Sum_probs=50.9
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCc---------------------HHHHHhCCCceec-------
Q 044593 28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHS---------------------PAVRQQLNAPFFA------- 79 (335)
Q Consensus 28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~---------------------~~~a~~~g~~~~~------- 79 (335)
....++|+|||.|..|.+.|..|++.|++|+++|+++.. .+...+.|+....
T Consensus 190 ~~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~d 269 (652)
T PRK12814 190 PKSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGRD 269 (652)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcccCc
Confidence 345789999999999999999999999999999987532 2234455664311
Q ss_pred -ChhhHhhcCCCEEEEecCc
Q 044593 80 -DLNDLCELHPDVVLLSTSI 98 (335)
Q Consensus 80 -~~~~~~~~~aDvVIlavp~ 98 (335)
+.+++. ..+|.||+||-.
T Consensus 270 v~~~~~~-~~~DaVilAtGa 288 (652)
T PRK12814 270 ITLEELQ-KEFDAVLLAVGA 288 (652)
T ss_pred cCHHHHH-hhcCEEEEEcCC
Confidence 123333 468999998854
No 367
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=96.10 E-value=0.018 Score=50.29 Aligned_cols=69 Identities=16% Similarity=0.151 Sum_probs=43.3
Q ss_pred eEEEEcccHHHHH--HHHHHHHc----CCeEEEEcCCCCcHHH--------HHhCCC----ceecChhhHhhcCCCEEEE
Q 044593 33 KIAVIGFGNFGQF--LAKAFARH----HHTLLVHSRSDHSPAV--------RQQLNA----PFFADLNDLCELHPDVVLL 94 (335)
Q Consensus 33 kI~IIG~G~mG~s--iA~~L~~~----G~~V~~~dr~~~~~~~--------a~~~g~----~~~~~~~~~~~~~aDvVIl 94 (335)
||+|||.|..-.. +...+... +.+|..+|+|++.++. +++.|. ..++|..+++ +++|+||.
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl-~gADfVi~ 79 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREAL-EGADFVIN 79 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHH-TTESEEEE
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHh-CCCCEEEE
Confidence 7999999876433 23333322 2389999999876542 223343 3478888888 89999999
Q ss_pred ecCchhHH
Q 044593 95 STSILSTQ 102 (335)
Q Consensus 95 avp~~~~~ 102 (335)
+.-.....
T Consensus 80 ~irvGg~~ 87 (183)
T PF02056_consen 80 QIRVGGLE 87 (183)
T ss_dssp ---TTHHH
T ss_pred EeeecchH
Confidence 98776543
No 368
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=96.09 E-value=0.019 Score=53.19 Aligned_cols=75 Identities=20% Similarity=0.249 Sum_probs=58.3
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhhc
Q 044593 30 TSLKIAVIGF-GNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSI 108 (335)
Q Consensus 30 ~~~kI~IIG~-G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~l 108 (335)
.++++.|||- ..+|.-++..|...++.|+++..... ++.+.. +++|+||.|+--..+ ++
T Consensus 155 ~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T~--------------~l~~~~-k~ADIvv~AvG~p~~---i~-- 214 (283)
T COG0190 155 RGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRTK--------------DLASIT-KNADIVVVAVGKPHF---IK-- 214 (283)
T ss_pred CCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCCC--------------CHHHHh-hhCCEEEEecCCccc---cc--
Confidence 5789999995 56799999999999999999875532 334556 789999999875432 22
Q ss_pred cccccCCccEEEEcCCC
Q 044593 109 PFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 109 ~~~~l~~~~iVvd~~Sv 125 (335)
.+.+++|.+|+|++..
T Consensus 215 -~d~vk~gavVIDVGin 230 (283)
T COG0190 215 -ADMVKPGAVVIDVGIN 230 (283)
T ss_pred -cccccCCCEEEecCCc
Confidence 2568999999999854
No 369
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.00 E-value=0.019 Score=53.99 Aligned_cols=76 Identities=13% Similarity=0.215 Sum_probs=57.4
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHH----cCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHH
Q 044593 29 STSLKIAVIG-FGNFGQFLAKAFAR----HHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQS 103 (335)
Q Consensus 29 ~~~~kI~IIG-~G~mG~siA~~L~~----~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~ 103 (335)
..+++|.||| ...+|.-++..|.+ .+..|+.+..+.. ++.+.+ ++||+||.|++-..
T Consensus 157 l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t~--------------~l~~~~-~~ADIvI~Avg~~~--- 218 (295)
T PRK14174 157 TKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSATK--------------DIPSYT-RQADILIAAIGKAR--- 218 (295)
T ss_pred CCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCch--------------hHHHHH-HhCCEEEEecCccC---
Confidence 4578999999 68899999999987 5788888765532 235556 78999999996442
Q ss_pred HHhhccccccCCccEEEEcCCC
Q 044593 104 VLKSIPFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 104 vl~~l~~~~l~~~~iVvd~~Sv 125 (335)
++. ...+++|++|+|++..
T Consensus 219 li~---~~~vk~GavVIDVgi~ 237 (295)
T PRK14174 219 FIT---ADMVKPGAVVIDVGIN 237 (295)
T ss_pred ccC---HHHcCCCCEEEEeecc
Confidence 222 2457899999999743
No 370
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=95.99 E-value=0.027 Score=49.87 Aligned_cols=36 Identities=22% Similarity=0.298 Sum_probs=32.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCC
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSD 64 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~ 64 (335)
.+..||.|||+|.+|+.+++.|...|. +++++|.+.
T Consensus 19 L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 19 LRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred HHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 346799999999999999999999997 799999874
No 371
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=95.98 E-value=0.02 Score=56.92 Aligned_cols=63 Identities=19% Similarity=0.300 Sum_probs=46.7
Q ss_pred eEEEEcccHHHHH-HHHHHHHcCCeEEEEcCCCCc-HHHHHhCCCceec-ChhhHhhcCCCEEEEec
Q 044593 33 KIAVIGFGNFGQF-LAKAFARHHHTLLVHSRSDHS-PAVRQQLNAPFFA-DLNDLCELHPDVVLLST 96 (335)
Q Consensus 33 kI~IIG~G~mG~s-iA~~L~~~G~~V~~~dr~~~~-~~~a~~~g~~~~~-~~~~~~~~~aDvVIlav 96 (335)
+|.|||.|..|.+ +|+.|++.|++|+++|.+... .+..++.|+.... ...+.+ .++|+||++.
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~-~~~d~vV~sp 66 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAENL-DDADVVVVSA 66 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCCCCHHHC-CCCCEEEECC
Confidence 5889999999998 999999999999999976542 2334556776532 122334 6799999854
No 372
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=95.96 E-value=0.017 Score=57.38 Aligned_cols=64 Identities=16% Similarity=0.082 Sum_probs=46.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcH----HHHHhCCCceec--ChhhHhhcCCCEEEEe
Q 044593 31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSP----AVRQQLNAPFFA--DLNDLCELHPDVVLLS 95 (335)
Q Consensus 31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~----~~a~~~g~~~~~--~~~~~~~~~aDvVIla 95 (335)
++||+|+|+|.-|.+.++.|.+.|++|+++|.++... ......++.... ...+.. .++|+||.+
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~-~~~d~vV~S 76 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDL-AEFDLVVKS 76 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhcc-ccCCEEEEC
Confidence 7899999999999999999999999999999776542 112234544321 111333 679999985
No 373
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=95.91 E-value=0.017 Score=55.33 Aligned_cols=63 Identities=24% Similarity=0.377 Sum_probs=44.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHH-HhCCC-ceecC---hhhHhhcCCCEEEE
Q 044593 31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVR-QQLNA-PFFAD---LNDLCELHPDVVLL 94 (335)
Q Consensus 31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a-~~~g~-~~~~~---~~~~~~~~aDvVIl 94 (335)
+++|||||-|..|..++.+-...|++|++.|.+++.-... .+.-+ ...+| +.+++ +.||+|-.
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela-~~~DViT~ 68 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELA-AKCDVITY 68 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHH-hhCCEEEE
Confidence 4689999999999999999999999999999988643211 11111 12222 34555 67888754
No 374
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.90 E-value=0.024 Score=56.32 Aligned_cols=65 Identities=14% Similarity=0.171 Sum_probs=47.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCc--HHHHHh--CCCceec--ChhhHhhcCCCEEEEec
Q 044593 31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHS--PAVRQQ--LNAPFFA--DLNDLCELHPDVVLLST 96 (335)
Q Consensus 31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~--~~~a~~--~g~~~~~--~~~~~~~~~aDvVIlav 96 (335)
.-.|+|||.|..|.++|+.|.+.|++|+++|.++.. .+...+ .|+.... ...+.+ .++|+||++-
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~-~~~d~vV~sp 76 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELL-VQASEIIISP 76 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHh-cCCCEEEECC
Confidence 457999999999999999999999999999987542 222333 3765532 123334 6899998854
No 375
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=95.87 E-value=0.027 Score=53.93 Aligned_cols=90 Identities=18% Similarity=0.211 Sum_probs=56.5
Q ss_pred CeEEEEcccHHHHHHHHHHHHcC-CeEEE-EcCC--CCcHHHHHhC----CC-------------------ce--ecChh
Q 044593 32 LKIAVIGFGNFGQFLAKAFARHH-HTLLV-HSRS--DHSPAVRQQL----NA-------------------PF--FADLN 82 (335)
Q Consensus 32 ~kI~IIG~G~mG~siA~~L~~~G-~~V~~-~dr~--~~~~~~a~~~----g~-------------------~~--~~~~~ 82 (335)
+||+|.|+|.||..+.+.+.+.+ +++.+ .|+. .+......+. |- .. ..++.
T Consensus 3 ikigInG~GRiGr~v~r~~~~~~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~v~~~g~~l~~~g~~i~v~~~~~~~ 82 (334)
T PRK08955 3 IKVGINGFGRIGRLALRAAWDWPELEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTAEGDAIVINGKRIRTTQNKAIA 82 (334)
T ss_pred eEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCEEEcCCEEEECCEEEEEEecCChh
Confidence 69999999999999999987654 56644 3433 2233333222 11 01 11444
Q ss_pred hHhhcCCCEEEEecCchhHHHHHhhccccccCCccEEEEcCCC
Q 044593 83 DLCELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 83 ~~~~~~aDvVIlavp~~~~~~vl~~l~~~~l~~~~iVvd~~Sv 125 (335)
++.+.++|+||.|+......+.... ++..|+.++|+++.
T Consensus 83 ~~~w~gvDiVle~tG~~~s~~~a~~----hl~aGak~V~iSap 121 (334)
T PRK08955 83 DTDWSGCDVVIEASGVMKTKALLQA----YLDQGVKRVVVTAP 121 (334)
T ss_pred hCCccCCCEEEEccchhhcHHHHHH----HHHCCCEEEEECCC
Confidence 4433589999999987765555543 35577888887654
No 376
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=95.85 E-value=0.022 Score=56.27 Aligned_cols=63 Identities=16% Similarity=0.189 Sum_probs=45.8
Q ss_pred eEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCc-HH----HHH-hCCCceec-ChhhHhhcCCCEEEEec
Q 044593 33 KIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHS-PA----VRQ-QLNAPFFA-DLNDLCELHPDVVLLST 96 (335)
Q Consensus 33 kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~-~~----~a~-~~g~~~~~-~~~~~~~~~aDvVIlav 96 (335)
||.|||.|..|.++|+.|.+.|++|+++|.++.. .. ... ..|+.... ...+.+ .++|+||.+.
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~~~~~-~~~d~vv~sp 70 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLHLEDL-NNADLVVKSP 70 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCchHHh-ccCCEEEECC
Confidence 5899999999999999999999999999987542 11 122 34775432 113334 6899998855
No 377
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=95.85 E-value=0.049 Score=52.03 Aligned_cols=67 Identities=19% Similarity=0.216 Sum_probs=47.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHH-cC-CeEEEEcCCCCcHHHHHhCCCceecChhhHhh-cCCCEEEEecCc
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFAR-HH-HTLLVHSRSDHSPAVRQQLNAPFFADLNDLCE-LHPDVVLLSTSI 98 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~-~G-~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~-~~aDvVIlavp~ 98 (335)
...+|.|+|+|.+|...+..+++ .| .+|+++|++++..+.+++.+..... ++... ..+|+||-|+..
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~~--~~~~~~~g~d~viD~~G~ 232 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYLI--DDIPEDLAVDHAFECVGG 232 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceeeh--hhhhhccCCcEEEECCCC
Confidence 46799999999999988887776 44 5899999998887777665543211 12210 247888888873
No 378
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=95.85 E-value=0.019 Score=59.00 Aligned_cols=70 Identities=23% Similarity=0.201 Sum_probs=51.5
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC---------------------cHHHHHhCCCceec------C-
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH---------------------SPAVRQQLNAPFFA------D- 80 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~---------------------~~~~a~~~g~~~~~------~- 80 (335)
..+++|+|||.|.+|.+.|..|++.|++|+++|+.+. ..+.+.+.|+.... +
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~ 214 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDI 214 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcC
Confidence 4678999999999999999999999999999996532 22446677774321 1
Q ss_pred -hhhHhhcCCCEEEEecCch
Q 044593 81 -LNDLCELHPDVVLLSTSIL 99 (335)
Q Consensus 81 -~~~~~~~~aDvVIlavp~~ 99 (335)
..+.. .++|+||+|+...
T Consensus 215 ~~~~~~-~~~D~Vi~AtG~~ 233 (564)
T PRK12771 215 TLEQLE-GEFDAVFVAIGAQ 233 (564)
T ss_pred CHHHHH-hhCCEEEEeeCCC
Confidence 22233 4689999998644
No 379
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=95.84 E-value=0.026 Score=60.49 Aligned_cols=67 Identities=21% Similarity=0.195 Sum_probs=49.8
Q ss_pred CCCCeEEEEcccHHHHHH-HHHHHHcCCeEEEEcCCCCc-HHHHHhCCCceec-ChhhHhhcCCCEEEEec
Q 044593 29 STSLKIAVIGFGNFGQFL-AKAFARHHHTLLVHSRSDHS-PAVRQQLNAPFFA-DLNDLCELHPDVVLLST 96 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~si-A~~L~~~G~~V~~~dr~~~~-~~~a~~~g~~~~~-~~~~~~~~~aDvVIlav 96 (335)
+++++|.|||+|..|.+. |+.|.+.|++|+++|.++.. .+...+.|+.... ...+.+ .++|+||++-
T Consensus 2 ~~~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~~~~g~~~~~~-~~~d~vV~Sp 71 (809)
T PRK14573 2 MKSLFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFLGHQEEHV-PEDAVVVYSS 71 (809)
T ss_pred CCcceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHc-CCCCEEEECC
Confidence 345679999999999997 99999999999999987542 3334566876532 223444 6799999854
No 380
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=95.84 E-value=0.014 Score=54.71 Aligned_cols=65 Identities=15% Similarity=0.214 Sum_probs=46.3
Q ss_pred CeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce----ecC---hhhHhhcCCCEEEEecC
Q 044593 32 LKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF----FAD---LNDLCELHPDVVLLSTS 97 (335)
Q Consensus 32 ~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~----~~~---~~~~~~~~aDvVIlavp 97 (335)
|+|.|+| .|.+|..++..|.+.|++|++++|+++........++.. ..+ +.+++ +.+|+||.+..
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~-~~~d~vi~~a~ 73 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAV-AGCRALFHVAA 73 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHH-hCCCEEEEece
Confidence 5899999 699999999999999999999999875432222224321 122 33444 67899998763
No 381
>PLN02427 UDP-apiose/xylose synthase
Probab=95.80 E-value=0.023 Score=55.17 Aligned_cols=68 Identities=19% Similarity=0.235 Sum_probs=46.4
Q ss_pred CCCCCeEEEEc-ccHHHHHHHHHHHHc-CCeEEEEcCCCCcHHHHHhC-------CCce----ecC---hhhHhhcCCCE
Q 044593 28 KSTSLKIAVIG-FGNFGQFLAKAFARH-HHTLLVHSRSDHSPAVRQQL-------NAPF----FAD---LNDLCELHPDV 91 (335)
Q Consensus 28 ~~~~~kI~IIG-~G~mG~siA~~L~~~-G~~V~~~dr~~~~~~~a~~~-------g~~~----~~~---~~~~~~~~aDv 91 (335)
..+.|||.|.| .|.+|+.++..|.++ |++|+++|++.......... ++.. ..+ ..+++ .++|+
T Consensus 11 ~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~-~~~d~ 89 (386)
T PLN02427 11 PIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLI-KMADL 89 (386)
T ss_pred cccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHh-hcCCE
Confidence 34568999999 699999999999998 59999999876543322211 1211 112 23344 67999
Q ss_pred EEEec
Q 044593 92 VLLST 96 (335)
Q Consensus 92 VIlav 96 (335)
||-+.
T Consensus 90 ViHlA 94 (386)
T PLN02427 90 TINLA 94 (386)
T ss_pred EEEcc
Confidence 99755
No 382
>PRK07236 hypothetical protein; Provisional
Probab=95.80 E-value=0.014 Score=56.68 Aligned_cols=38 Identities=26% Similarity=0.195 Sum_probs=34.7
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593 28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH 65 (335)
Q Consensus 28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~ 65 (335)
.|+.++|.|||.|..|.++|..|++.|++|+++++.+.
T Consensus 3 ~~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 3 HMSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 46678999999999999999999999999999998763
No 383
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=95.78 E-value=0.057 Score=51.19 Aligned_cols=47 Identities=15% Similarity=0.054 Sum_probs=41.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCe-EEEEcCCCCcHHHHHhCCCc
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHHT-LLVHSRSDHSPAVRQQLNAP 76 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~~-V~~~dr~~~~~~~a~~~g~~ 76 (335)
...+|.|+|.|.+|...+..++..|.+ |++.+++++..+.+++.|+.
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~ 210 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGAD 210 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCC
Confidence 467999999999999999999999988 99999988887778777763
No 384
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=95.78 E-value=0.022 Score=42.43 Aligned_cols=34 Identities=35% Similarity=0.417 Sum_probs=31.4
Q ss_pred eEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCc
Q 044593 33 KIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHS 66 (335)
Q Consensus 33 kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~ 66 (335)
||.|||.|.+|.-+|..|.+.|.+|+++++++..
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence 6899999999999999999999999999988753
No 385
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=95.77 E-value=0.014 Score=57.20 Aligned_cols=33 Identities=36% Similarity=0.344 Sum_probs=31.4
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCC
Q 044593 32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSD 64 (335)
Q Consensus 32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~ 64 (335)
.+|.|||.|.+|.++|..|++.|++|+++|+++
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 489999999999999999999999999999986
No 386
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=95.77 E-value=0.058 Score=51.30 Aligned_cols=89 Identities=17% Similarity=0.152 Sum_probs=60.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHhhc
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLKSI 108 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~~l 108 (335)
.+.+|.|+|.|.+|...+..++..|.+|++.+++++..+.++++|+...-+..+......|+++.++.... ....++
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~~~~~~~~~-- 242 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAGGLVPPALE-- 242 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcHHHHHHHHH--
Confidence 46799999999999988888888899999999999888889999985432211111134687777765432 222222
Q ss_pred cccccCCccEEEEcC
Q 044593 109 PFQRLKRSTLFVDVL 123 (335)
Q Consensus 109 ~~~~l~~~~iVvd~~ 123 (335)
.++++..++-++
T Consensus 243 ---~l~~~G~~v~~G 254 (329)
T TIGR02822 243 ---ALDRGGVLAVAG 254 (329)
T ss_pred ---hhCCCcEEEEEe
Confidence 345555555554
No 387
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.74 E-value=0.029 Score=55.89 Aligned_cols=64 Identities=23% Similarity=0.276 Sum_probs=46.6
Q ss_pred eEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCc-H----HHHHhCCCceecC--hh-----hHhhcCCCEEEEecC
Q 044593 33 KIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHS-P----AVRQQLNAPFFAD--LN-----DLCELHPDVVLLSTS 97 (335)
Q Consensus 33 kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~-~----~~a~~~g~~~~~~--~~-----~~~~~~aDvVIlavp 97 (335)
||.|||.|..|.+.|+.|.+.|++|.++|+++.. . ....+.|+..... .. ... .++|+||.+..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~-~~~d~vv~s~g 77 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWL-DQPDLVVVSPG 77 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHh-hcCCEEEECCC
Confidence 7999999999999999999999999999987642 2 1234567754321 11 233 67999998543
No 388
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=95.70 E-value=0.047 Score=54.77 Aligned_cols=36 Identities=39% Similarity=0.507 Sum_probs=32.9
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCC
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSD 64 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~ 64 (335)
...++|+|||.|..|.+.|..|++.|++|+++++.+
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~ 176 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERAD 176 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 456899999999999999999999999999999864
No 389
>PLN00198 anthocyanidin reductase; Provisional
Probab=95.69 E-value=0.044 Score=52.10 Aligned_cols=41 Identities=17% Similarity=0.213 Sum_probs=35.0
Q ss_pred ccCCCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCc
Q 044593 26 YVKSTSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHS 66 (335)
Q Consensus 26 ~~~~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~ 66 (335)
++++.+++|.|.| .|.+|+.++..|.+.|++|.+..|+...
T Consensus 4 ~~~~~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~ 45 (338)
T PLN00198 4 LTPTGKKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPEN 45 (338)
T ss_pred ccCCCCCeEEEECCchHHHHHHHHHHHHCCCEEEEEECCCCC
Confidence 3456688999999 7999999999999999999888777643
No 390
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=95.67 E-value=0.045 Score=54.22 Aligned_cols=68 Identities=19% Similarity=0.230 Sum_probs=47.5
Q ss_pred CeEEEEcccHH-HHHHHHHHHHc-----CCeEEEEcCCCCcHHH--------HHhCCC----ceecChhhHhhcCCCEEE
Q 044593 32 LKIAVIGFGNF-GQFLAKAFARH-----HHTLLVHSRSDHSPAV--------RQQLNA----PFFADLNDLCELHPDVVL 93 (335)
Q Consensus 32 ~kI~IIG~G~m-G~siA~~L~~~-----G~~V~~~dr~~~~~~~--------a~~~g~----~~~~~~~~~~~~~aDvVI 93 (335)
|||+|||.|.. .-.+...|... +-+|+.+|.+++..+. +.+.|. ..++|.++++ .+||+||
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~Al-~gADfVi 79 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAI-IDADFVI 79 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHh-CCCCEEE
Confidence 69999999873 33344555443 2489999999876542 223343 3578888888 8999999
Q ss_pred EecCchh
Q 044593 94 LSTSILS 100 (335)
Q Consensus 94 lavp~~~ 100 (335)
.+.-...
T Consensus 80 ~~irvGg 86 (425)
T cd05197 80 NQFRVGG 86 (425)
T ss_pred EeeecCC
Confidence 9886554
No 391
>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.65 E-value=0.2 Score=47.38 Aligned_cols=188 Identities=13% Similarity=0.141 Sum_probs=108.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcC-CeEEEEcCCCCc---HHHHHhCCCc---------------------eecChhhH
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHH-HTLLVHSRSDHS---PAVRQQLNAP---------------------FFADLNDL 84 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G-~~V~~~dr~~~~---~~~a~~~g~~---------------------~~~~~~~~ 84 (335)
.+.++.++|+|...-.+|.-+...| +++-.++|.... ...+.+.+-. +..+.+++
T Consensus 3 ~m~~vLllGtGpvaIQlAv~l~~h~d~~lg~~~r~s~rse~l~qala~~~ql~l~~q~eahr~leg~~~id~~~kd~a~~ 82 (431)
T COG4408 3 NMLPVLLLGTGPVAIQLAVDLSAHGDARLGLYNRPSTRSERLKQALALTPQLYLQGQGEAHRQLEGSVTIDCYIKDLAQA 82 (431)
T ss_pred cccceeEeecCcHHHHHHHHHHhccCceeeccCCCCchhHHHHHHHhcCCeEEEEeccHHHHhhcCceehhHHHhhHHHh
Confidence 4678999999999999999999887 577777765432 2233333211 12345555
Q ss_pred hhcCCCEEEEecCchhHHHHHhhccccccCCccEEEEcCCCCc--hHHHHHHhhCCCCCceEeccccCCCCCc--cc-cc
Q 044593 85 CELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKE--FPRNLFLKYLPQDFDILCTHPMFGPESA--KS-SW 159 (335)
Q Consensus 85 ~~~~aDvVIlavp~~~~~~vl~~l~~~~l~~~~iVvd~~SvK~--~~~~~l~~~l~~~~~~v~~HPmaG~~~~--~~-~~ 159 (335)
. .+-+-+|+|||.++..+++++|.-..++.=..++-++++-+ ..+..+...++.++.+++.----|..+- ++ ..
T Consensus 83 ~-~dwqtlilav~aDaY~dvlqqi~~e~L~~vk~viLiSptfGsn~lv~~~mnk~~~daeViS~SsY~~dTk~id~~~p~ 161 (431)
T COG4408 83 V-GDWQTLILAVPADAYYDVLQQIPWEALPQVKSVILISPTFGSNLLVQNLMNKAGRDAEVISLSSYYADTKYIDAEQPN 161 (431)
T ss_pred h-chhheEEEEeecHHHHHHHhcCCHhHhccccEEEEecccccccHHHHHHHhhhCCCceEEEeehhcccceeecccCcc
Confidence 5 67899999999999999999985333332222332322221 2333333344556677765433332210 00 00
Q ss_pred CCCcceecc-cccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHh--hhhHHHHH
Q 044593 160 ENLPFMYDK-VRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGS--QFVTHTMG 218 (335)
Q Consensus 160 ~g~~~i~~~-~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~--s~lph~la 218 (335)
+..+..+.. ..+++...+...++.+..+++..|..+..+....|.+.-..+ -|-|.+++
T Consensus 162 ~alTkavKkriYlgs~~~ns~~~e~l~~v~aq~~I~v~~~esp~~AEtrnit~YVHpPlfln 223 (431)
T COG4408 162 RALTKAVKKRIYLGSQHGNSGSAEMLTAVLAQHGIDVEPCESPLAAETRNITLYVHPPLFLN 223 (431)
T ss_pred hHHHHHHhHheeeccCCCCChHHHHHHHHHHhcCCceEEcCChhhhhhcccceeecCcchhh
Confidence 000001100 012433333456778899999999999998777666543332 25566654
No 392
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.65 E-value=0.034 Score=53.78 Aligned_cols=36 Identities=22% Similarity=0.212 Sum_probs=31.9
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCC
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSD 64 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~ 64 (335)
.+..||.|||+|.+|+.++..|...|. +++++|.+.
T Consensus 26 L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 26 LFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred HhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 346799999999999999999999997 788888774
No 393
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=95.64 E-value=0.055 Score=51.42 Aligned_cols=67 Identities=18% Similarity=0.147 Sum_probs=50.1
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHH---HHHhCC-C-----------ceecChhhHhhcCCCEEE
Q 044593 30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPA---VRQQLN-A-----------PFFADLNDLCELHPDVVL 93 (335)
Q Consensus 30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~---~a~~~g-~-----------~~~~~~~~~~~~~aDvVI 93 (335)
.+++|.|-| .|-||+++.+.|.++||.|.+.-|+++..+ .+.++. . ....+...++ .+||.||
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai-~gcdgVf 83 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAI-DGCDGVF 83 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHH-hCCCEEE
Confidence 678999999 599999999999999999999999986532 233331 1 1234556666 8999999
Q ss_pred E-ecC
Q 044593 94 L-STS 97 (335)
Q Consensus 94 l-avp 97 (335)
= |.|
T Consensus 84 H~Asp 88 (327)
T KOG1502|consen 84 HTASP 88 (327)
T ss_pred EeCcc
Confidence 5 444
No 394
>PRK06270 homoserine dehydrogenase; Provisional
Probab=95.63 E-value=0.04 Score=53.01 Aligned_cols=69 Identities=25% Similarity=0.310 Sum_probs=44.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHHc----------CCeEE-EEcCCCC-------cH----HHHHhCCCc-------eecCh
Q 044593 31 SLKIAVIGFGNFGQFLAKAFARH----------HHTLL-VHSRSDH-------SP----AVRQQLNAP-------FFADL 81 (335)
Q Consensus 31 ~~kI~IIG~G~mG~siA~~L~~~----------G~~V~-~~dr~~~-------~~----~~a~~~g~~-------~~~~~ 81 (335)
.+||+|+|+|.||+.+++.|.+. +.+|+ ++|++.. .. +.+.+.+.. .+.+.
T Consensus 2 ~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~ 81 (341)
T PRK06270 2 EMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISG 81 (341)
T ss_pred eEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCH
Confidence 46899999999999999999765 35654 5575321 11 112222321 12356
Q ss_pred hhHhh-cCCCEEEEecCch
Q 044593 82 NDLCE-LHPDVVLLSTSIL 99 (335)
Q Consensus 82 ~~~~~-~~aDvVIlavp~~ 99 (335)
.+++. .+.|+||.|||..
T Consensus 82 ~ell~~~~~DvVvd~T~s~ 100 (341)
T PRK06270 82 LEVIRSVDADVVVEATPTN 100 (341)
T ss_pred HHHhhccCCCEEEECCcCc
Confidence 66551 3689999999964
No 395
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=95.62 E-value=0.016 Score=47.88 Aligned_cols=34 Identities=24% Similarity=0.351 Sum_probs=30.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCC
Q 044593 31 SLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSD 64 (335)
Q Consensus 31 ~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~ 64 (335)
..||+|+|+|.+|+.++..|...|. +++++|.+.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 4689999999999999999999998 799999874
No 396
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=95.57 E-value=0.031 Score=53.58 Aligned_cols=37 Identities=14% Similarity=0.107 Sum_probs=33.0
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593 29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDH 65 (335)
Q Consensus 29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~ 65 (335)
.++|||.|.| +|-+|+.++..|.+.|++|+++|+...
T Consensus 13 ~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~ 50 (348)
T PRK15181 13 LAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFST 50 (348)
T ss_pred ccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 4568999999 699999999999999999999998653
No 397
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=95.56 E-value=0.057 Score=50.65 Aligned_cols=37 Identities=19% Similarity=0.270 Sum_probs=32.8
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCc
Q 044593 30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHS 66 (335)
Q Consensus 30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~ 66 (335)
+.++|.|.| +|-+|+.++..|.+.|++|.+++|+...
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~ 40 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPND 40 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCc
Confidence 457999999 6999999999999999999999887653
No 398
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=95.55 E-value=0.03 Score=52.62 Aligned_cols=31 Identities=16% Similarity=0.240 Sum_probs=28.0
Q ss_pred eEEEEcccHHHHHHHHHHHHcCC-eEEEEcCC
Q 044593 33 KIAVIGFGNFGQFLAKAFARHHH-TLLVHSRS 63 (335)
Q Consensus 33 kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~ 63 (335)
||.|||+|.+|+.+|+.|...|. +++++|.+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 69999999999999999999997 78888764
No 399
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=95.54 E-value=0.054 Score=54.37 Aligned_cols=120 Identities=13% Similarity=0.152 Sum_probs=72.8
Q ss_pred hhHhhhhhcCCCccccchhhccc-CCCCCeEEEEcc----------cHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhC
Q 044593 5 HVIRAIDAAQPFDYESQLHTQYV-KSTSLKIAVIGF----------GNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQL 73 (335)
Q Consensus 5 ~~~r~~~~~~~~~~~~~~~~~~~-~~~~~kI~IIG~----------G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~ 73 (335)
...++++..|+...-.++...+. .....||+|+|+ ..-...++..|.+.|.+|.+||+--...+.....
T Consensus 297 ~~~~~iN~~~~~~vv~~~~~~l~~~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~ 376 (473)
T PLN02353 297 KQVIKMNDYQKSRFVNRVVSSMFNTVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDL 376 (473)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhhcccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHh
Confidence 34556666665422122222221 246789999997 3356788999999999999999874332211111
Q ss_pred ----------------------CCceecChhhHhhcCCCEEEEecCchhHHHH-HhhccccccCCccEEEEcCCCC
Q 044593 74 ----------------------NAPFFADLNDLCELHPDVVLLSTSILSTQSV-LKSIPFQRLKRSTLFVDVLSVK 126 (335)
Q Consensus 74 ----------------------g~~~~~~~~~~~~~~aDvVIlavp~~~~~~v-l~~l~~~~l~~~~iVvd~~SvK 126 (335)
++....+..+++ +++|+||++|+-...... ++.+. ..+++..+|+|.-++-
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~aD~vvi~t~~~ef~~l~~~~~~-~~m~~~~~viD~rn~l 450 (473)
T PLN02353 377 SMNKFDWDHPRHLQPMSPTAVKQVSVVWDAYEAT-KGAHGICILTEWDEFKTLDYQKIY-DNMQKPAFVFDGRNVL 450 (473)
T ss_pred hcccccccccccccccccccccceeeeCCHHHHh-cCCCEEEECCCChHhcccCHHHHH-HhccCCCEEEECCCCC
Confidence 123344555666 899999999998765432 22221 2233445899987663
No 400
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=95.54 E-value=0.075 Score=52.37 Aligned_cols=73 Identities=16% Similarity=0.120 Sum_probs=50.4
Q ss_pred CCCCeEEEEcccHHHHHH--HHHHHHc----CCeEEEEcCCCCcHH----H----HHhCCC----ceecChhhHhhcCCC
Q 044593 29 STSLKIAVIGFGNFGQFL--AKAFARH----HHTLLVHSRSDHSPA----V----RQQLNA----PFFADLNDLCELHPD 90 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~si--A~~L~~~----G~~V~~~dr~~~~~~----~----a~~~g~----~~~~~~~~~~~~~aD 90 (335)
|+.+||+|||.|..+..- ...+... +.++..+|.+++..+ . .++.|. ..++|.++++ .+||
T Consensus 1 m~~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~~eAl-~gAd 79 (442)
T COG1486 1 MKKFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEAGAPVKVEATTDRREAL-EGAD 79 (442)
T ss_pred CCcceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhhCCCeEEEEecCHHHHh-cCCC
Confidence 457899999999876432 2222222 348999999987655 1 223444 3467888888 8999
Q ss_pred EEEEecCchhHH
Q 044593 91 VVLLSTSILSTQ 102 (335)
Q Consensus 91 vVIlavp~~~~~ 102 (335)
+||.+.-+....
T Consensus 80 fVi~~~rvG~l~ 91 (442)
T COG1486 80 FVITQIRVGGLE 91 (442)
T ss_pred EEEEEEeeCCcc
Confidence 999998776543
No 401
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=95.51 E-value=0.036 Score=51.81 Aligned_cols=88 Identities=14% Similarity=0.177 Sum_probs=63.3
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhhcccc
Q 044593 32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSIPFQ 111 (335)
Q Consensus 32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~l~~~ 111 (335)
+-+.|.|+|-+|...|.+|+..|..|++...+|-..-.|.-.|..++ .+++++ .++|++|.+|--..+ +..+. ..
T Consensus 215 Kv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V~-tm~ea~-~e~difVTtTGc~di--i~~~H-~~ 289 (434)
T KOG1370|consen 215 KVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEVT-TLEEAI-REVDIFVTTTGCKDI--ITGEH-FD 289 (434)
T ss_pred cEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccEee-eHHHhh-hcCCEEEEccCCcch--hhHHH-HH
Confidence 34456699999999999999999999999999843322444466654 567777 899999998875543 12222 23
Q ss_pred ccCCccEEEEcCC
Q 044593 112 RLKRSTLFVDVLS 124 (335)
Q Consensus 112 ~l~~~~iVvd~~S 124 (335)
.+++++||.+++-
T Consensus 290 ~mk~d~IvCN~Gh 302 (434)
T KOG1370|consen 290 QMKNDAIVCNIGH 302 (434)
T ss_pred hCcCCcEEecccc
Confidence 4678889988763
No 402
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=95.50 E-value=0.043 Score=53.38 Aligned_cols=35 Identities=20% Similarity=0.268 Sum_probs=31.6
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCC
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRS 63 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~ 63 (335)
.+..+|.|||+|.+|+.++..|...|. +++++|.+
T Consensus 39 l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 39 LHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 346799999999999999999999996 89999887
No 403
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.49 E-value=0.029 Score=55.19 Aligned_cols=61 Identities=18% Similarity=0.250 Sum_probs=42.9
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEe
Q 044593 32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLS 95 (335)
Q Consensus 32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIla 95 (335)
|+|.|+|+|.-|.++|+.|. .|++|+++|.++.... ..+.|+... ..+.....++|+||.+
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~-~~~~gi~~~-~~~~~~~~~~d~vv~s 61 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESH-KDEEGNLLL-PSNDFDPNKSDLEIPS 61 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccc-hhhcCCEEe-cHHHcCcCCCCEEEEC
Confidence 68999999999999999999 9999999996543222 223466553 2111110368988875
No 404
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=95.49 E-value=0.062 Score=50.57 Aligned_cols=86 Identities=13% Similarity=0.057 Sum_probs=55.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCe-EEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHhh
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHHT-LLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLKS 107 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~~-V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~~ 107 (335)
...++.|+|+|.+|...+..++..|.+ |.++|++++..+.+....+... ..+.- ..+|+||-|+.... ....++.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i~~--~~~~~-~g~Dvvid~~G~~~~~~~~~~~ 220 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVLDP--EKDPR-RDYRAIYDASGDPSLIDTLVRR 220 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccccCh--hhccC-CCCCEEEECCCCHHHHHHHHHh
Confidence 356899999999999999888888986 6677887766655554432211 11122 45899999888653 3444443
Q ss_pred ccccccCCccEEEEcC
Q 044593 108 IPFQRLKRSTLFVDVL 123 (335)
Q Consensus 108 l~~~~l~~~~iVvd~~ 123 (335)
++++..++-++
T Consensus 221 -----l~~~G~iv~~G 231 (308)
T TIGR01202 221 -----LAKGGEIVLAG 231 (308)
T ss_pred -----hhcCcEEEEEe
Confidence 34555555554
No 405
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.48 E-value=0.093 Score=47.36 Aligned_cols=78 Identities=14% Similarity=0.178 Sum_probs=56.1
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC--cHHHHHhCCCceec---ChhhHhhcCCCEEEEecCchhHHH
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH--SPAVRQQLNAPFFA---DLNDLCELHPDVVLLSTSILSTQS 103 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~--~~~~a~~~g~~~~~---~~~~~~~~~aDvVIlavp~~~~~~ 103 (335)
.+.++|.|||.|.+|..=+..|.+.|.+|+++.+.-. -.+.+....+.... +..++ .++++||.||....+..
T Consensus 23 ~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl--~g~~LViaATdD~~vN~ 100 (223)
T PRK05562 23 SNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFI--KDKHLIVIATDDEKLNN 100 (223)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHh--CCCcEEEECCCCHHHHH
Confidence 4578999999999999999999999999999977643 22333322333211 22333 78999999999888776
Q ss_pred HHhhc
Q 044593 104 VLKSI 108 (335)
Q Consensus 104 vl~~l 108 (335)
-+...
T Consensus 101 ~I~~~ 105 (223)
T PRK05562 101 KIRKH 105 (223)
T ss_pred HHHHH
Confidence 66555
No 406
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=95.46 E-value=0.02 Score=55.93 Aligned_cols=34 Identities=26% Similarity=0.356 Sum_probs=31.8
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593 32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH 65 (335)
Q Consensus 32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~ 65 (335)
|+|.|||.|.+|.++|..|++.|++|+++|++..
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 5899999999999999999999999999999753
No 407
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.46 E-value=0.058 Score=53.47 Aligned_cols=66 Identities=20% Similarity=0.168 Sum_probs=46.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcH-HHHHhCCCceec--ChhhHhhcCCCEEEEec
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSP-AVRQQLNAPFFA--DLNDLCELHPDVVLLST 96 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~-~~a~~~g~~~~~--~~~~~~~~~aDvVIlav 96 (335)
..++|.|||.|..|.+.++.|++.|++|+++|.++... ....+.|+.... .....+ ..+|+||.+-
T Consensus 5 ~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~~g~~~~~~~~~~~~~-~~~d~vv~sp 73 (438)
T PRK03806 5 QGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLPENVERHTGSLNDEWL-LAADLIVASP 73 (438)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHhcCCEEEeCCCCHHHh-cCCCEEEECC
Confidence 35689999999999999999999999999999765432 111233765432 122334 5789777643
No 408
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=95.44 E-value=0.024 Score=54.99 Aligned_cols=37 Identities=19% Similarity=0.346 Sum_probs=33.0
Q ss_pred CCCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCC
Q 044593 28 KSTSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSD 64 (335)
Q Consensus 28 ~~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~ 64 (335)
....|||.|.| .|.+|+.++..|.+.|++|++++|..
T Consensus 18 ~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~ 55 (370)
T PLN02695 18 PSEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK 55 (370)
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence 34678999999 59999999999999999999999864
No 409
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=95.43 E-value=0.11 Score=46.69 Aligned_cols=91 Identities=22% Similarity=0.245 Sum_probs=59.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCcee---c--Chhh-H---hhcCCCEEEEecCc-
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFF---A--DLND-L---CELHPDVVLLSTSI- 98 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~---~--~~~~-~---~~~~aDvVIlavp~- 98 (335)
....+|.|+|.|.+|..++..++..|.+|++.+++++..+.+.+.|.... . +..+ + .....|++|-+++.
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~ 212 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGP 212 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCH
Confidence 34679999999889999999999999999999998877666666654311 1 1111 0 01357888888776
Q ss_pred hhHHHHHhhccccccCCccEEEEcCC
Q 044593 99 LSTQSVLKSIPFQRLKRSTLFVDVLS 124 (335)
Q Consensus 99 ~~~~~vl~~l~~~~l~~~~iVvd~~S 124 (335)
......++.+ +++..+++++.
T Consensus 213 ~~~~~~~~~l-----~~~G~~v~~~~ 233 (271)
T cd05188 213 ETLAQALRLL-----RPGGRIVVVGG 233 (271)
T ss_pred HHHHHHHHhc-----ccCCEEEEEcc
Confidence 4444444433 34445555543
No 410
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=95.42 E-value=0.036 Score=49.45 Aligned_cols=40 Identities=13% Similarity=0.185 Sum_probs=34.7
Q ss_pred CCCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcH
Q 044593 28 KSTSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSP 67 (335)
Q Consensus 28 ~~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~ 67 (335)
++++++|.|.| .|.+|..+++.|.+.|++|++++|++...
T Consensus 2 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~ 42 (246)
T PRK05653 2 SLQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAA 42 (246)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHH
Confidence 34567899999 59999999999999999999999997643
No 411
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=95.39 E-value=0.04 Score=56.31 Aligned_cols=38 Identities=16% Similarity=0.140 Sum_probs=33.5
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcH
Q 044593 30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSP 67 (335)
Q Consensus 30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~ 67 (335)
.++.|.|.| .|.+|..+++.|.+.|++|++++|+.+..
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl 117 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRA 117 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHH
Confidence 456788999 59999999999999999999999997654
No 412
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=95.39 E-value=0.036 Score=53.60 Aligned_cols=88 Identities=14% Similarity=0.216 Sum_probs=55.9
Q ss_pred CeEEEEc-ccHHHHHHHHHHH-HcCCe---EEEEcCCC--CcHHHHHhCCCceecCh-h-hHhhcCCCEEEEecCchhHH
Q 044593 32 LKIAVIG-FGNFGQFLAKAFA-RHHHT---LLVHSRSD--HSPAVRQQLNAPFFADL-N-DLCELHPDVVLLSTSILSTQ 102 (335)
Q Consensus 32 ~kI~IIG-~G~mG~siA~~L~-~~G~~---V~~~dr~~--~~~~~a~~~g~~~~~~~-~-~~~~~~aDvVIlavp~~~~~ 102 (335)
++|+|+| .|.+|..+...|. +..+. +..+.... ...-........ ..+. . +.. .++|++|.|.+.+...
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f~~~~~~-v~~~~~~~~~-~~vDivffa~g~~~s~ 78 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGGTTGT-LQDAFDIDAL-KALDIIITCQGGDYTN 78 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCCCCCcce-EEcCcccccc-cCCCEEEEcCCHHHHH
Confidence 5899999 5999999999998 66664 34443322 111101111111 1122 1 123 6899999999988777
Q ss_pred HHHhhccccccCCc--cEEEEcCCC
Q 044593 103 SVLKSIPFQRLKRS--TLFVDVLSV 125 (335)
Q Consensus 103 ~vl~~l~~~~l~~~--~iVvd~~Sv 125 (335)
++...+. +.| ++|+|.+|.
T Consensus 79 ~~~p~~~----~aG~~~~VIDnSSa 99 (366)
T TIGR01745 79 EIYPKLR----ESGWQGYWIDAASS 99 (366)
T ss_pred HHHHHHH----hCCCCeEEEECChh
Confidence 7777653 467 789999874
No 413
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=95.38 E-value=0.045 Score=52.44 Aligned_cols=39 Identities=23% Similarity=0.293 Sum_probs=34.4
Q ss_pred CCCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCc
Q 044593 28 KSTSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHS 66 (335)
Q Consensus 28 ~~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~ 66 (335)
.+..|+|.|.| .|.+|+.+++.|.+.|++|++.+|+...
T Consensus 7 ~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~ 46 (353)
T PLN02896 7 ESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAK 46 (353)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHH
Confidence 45688999999 6999999999999999999998887643
No 414
>PRK08163 salicylate hydroxylase; Provisional
Probab=95.37 E-value=0.023 Score=55.11 Aligned_cols=36 Identities=19% Similarity=0.176 Sum_probs=33.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH 65 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~ 65 (335)
+.++|.|||.|..|.++|..|++.|++|+++++++.
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 357899999999999999999999999999998764
No 415
>PRK06753 hypothetical protein; Provisional
Probab=95.37 E-value=0.022 Score=54.84 Aligned_cols=34 Identities=29% Similarity=0.413 Sum_probs=32.0
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593 32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH 65 (335)
Q Consensus 32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~ 65 (335)
|+|.|||.|..|.++|..|++.|++|+++++++.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 6899999999999999999999999999998864
No 416
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=95.37 E-value=0.043 Score=59.67 Aligned_cols=70 Identities=23% Similarity=0.169 Sum_probs=50.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCc---------------------HHHHHhCCCcee--------c
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHS---------------------PAVRQQLNAPFF--------A 79 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~---------------------~~~a~~~g~~~~--------~ 79 (335)
.+++||+|||.|.-|.+.|..|.+.||+|++|++.+.. .+..++.|+.+. -
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG~di 383 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGKTA 383 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEeccEE
Confidence 45789999999999999999999999999999986421 112344566421 1
Q ss_pred ChhhHhhcCCCEEEEecCc
Q 044593 80 DLNDLCELHPDVVLLSTSI 98 (335)
Q Consensus 80 ~~~~~~~~~aDvVIlavp~ 98 (335)
+.+++...++|.||+||-.
T Consensus 384 t~~~l~~~~yDAV~LAtGA 402 (944)
T PRK12779 384 TLEDLKAAGFWKIFVGTGA 402 (944)
T ss_pred eHHHhccccCCEEEEeCCC
Confidence 3444431268999999854
No 417
>PRK14031 glutamate dehydrogenase; Provisional
Probab=95.33 E-value=0.1 Score=51.71 Aligned_cols=34 Identities=18% Similarity=0.174 Sum_probs=30.4
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEE-Ec
Q 044593 28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLV-HS 61 (335)
Q Consensus 28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~-~d 61 (335)
+.++++|+|.|+|++|...|+.|.+.|.+|++ .|
T Consensus 225 ~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD 259 (444)
T PRK14031 225 DLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSD 259 (444)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 35688999999999999999999999999876 56
No 418
>PRK06182 short chain dehydrogenase; Validated
Probab=95.32 E-value=0.045 Score=50.23 Aligned_cols=46 Identities=17% Similarity=0.100 Sum_probs=36.9
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCC
Q 044593 30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNA 75 (335)
Q Consensus 30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~ 75 (335)
++++|.|.| .|.+|..+++.|.+.|++|++.+|+++..+.....++
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~~~~ 48 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLASLGV 48 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhCCC
Confidence 457899999 5999999999999999999999999765543333343
No 419
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=95.32 E-value=0.046 Score=53.12 Aligned_cols=63 Identities=29% Similarity=0.322 Sum_probs=43.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcH-HHHHhCCC-ceecC---hhhHhhcCCCEEEE
Q 044593 31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSP-AVRQQLNA-PFFAD---LNDLCELHPDVVLL 94 (335)
Q Consensus 31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~-~~a~~~g~-~~~~~---~~~~~~~~aDvVIl 94 (335)
+++|+|||.|..|..++.+.++.|++|+++|.+++.. ....+.-+ ....| +.+++ +.||+|..
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a-~~~dvit~ 69 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELA-EQCDVITY 69 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHH-hcCCEEEe
Confidence 4689999999999999999999999999999887542 21111111 11233 33445 68998754
No 420
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.29 E-value=0.034 Score=52.23 Aligned_cols=55 Identities=18% Similarity=0.222 Sum_probs=47.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHHHHHhCCCceecChhhH
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPAVRQQLNAPFFADLNDL 84 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~~a~~~g~~~~~~~~~~ 84 (335)
.+..++|+|+|.+|.+.+...+.+|. +|+++|.|++..+.+++.|+...-++.++
T Consensus 192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~d~ 247 (375)
T KOG0022|consen 192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPKDL 247 (375)
T ss_pred CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChhhc
Confidence 45789999999999999999999996 89999999999999999999765555543
No 421
>PLN02214 cinnamoyl-CoA reductase
Probab=95.28 E-value=0.059 Score=51.55 Aligned_cols=37 Identities=16% Similarity=0.246 Sum_probs=32.9
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHHcCCeEEEEcCCCCc
Q 044593 30 TSLKIAVIGF-GNFGQFLAKAFARHHHTLLVHSRSDHS 66 (335)
Q Consensus 30 ~~~kI~IIG~-G~mG~siA~~L~~~G~~V~~~dr~~~~ 66 (335)
++++|.|.|. |.+|+.++..|.++|++|++.+|+.+.
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~ 46 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDD 46 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchh
Confidence 5678999995 999999999999999999999987653
No 422
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=95.28 E-value=0.064 Score=52.85 Aligned_cols=115 Identities=14% Similarity=0.157 Sum_probs=72.9
Q ss_pred chhhhHhhhhhcCCCccccchhhcccCCCCCeEEEEcc----------cHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHH
Q 044593 2 PLRHVIRAIDAAQPFDYESQLHTQYVKSTSLKIAVIGF----------GNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQ 71 (335)
Q Consensus 2 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~kI~IIG~----------G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~ 71 (335)
|+-...|+++-.|+...-.++...+......+|+|+|+ ..-.-.++..|.+.|.+|.+||+.-..... .
T Consensus 284 ~l~~~~~~~N~~~~~~~~~~~~~~l~~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~~-~ 362 (411)
T TIGR03026 284 ELIEAAREINDSQPDYVVEKILDLLGPLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEV-K 362 (411)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhcccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhhh-h
Confidence 45566777777776432223333333456789999997 224668899999999999999987533221 1
Q ss_pred hCCCceecChhhHhhcCCCEEEEecCchhHHHH-HhhccccccCCccEEEEc
Q 044593 72 QLNAPFFADLNDLCELHPDVVLLSTSILSTQSV-LKSIPFQRLKRSTLFVDV 122 (335)
Q Consensus 72 ~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~v-l~~l~~~~l~~~~iVvd~ 122 (335)
..+ ...+..+.+ +++|+||++|+-....++ .+.+. ..+ ...+|+|.
T Consensus 363 ~~~--~~~~~~~~~-~~ad~~v~~t~~~~~~~~~~~~~~-~~~-~~~~v~D~ 409 (411)
T TIGR03026 363 GLP--LIDDLEEAL-KGADALVILTDHDEFKDLDLEKIK-DLM-KGKVVVDT 409 (411)
T ss_pred hcc--cCCCHHHHH-hCCCEEEEecCCHHHhccCHHHHH-Hhc-CCCEEEeC
Confidence 111 235666777 899999999997765432 22332 122 23478885
No 423
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=95.28 E-value=0.069 Score=50.67 Aligned_cols=32 Identities=22% Similarity=0.298 Sum_probs=29.0
Q ss_pred eEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCC
Q 044593 33 KIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSD 64 (335)
Q Consensus 33 kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~ 64 (335)
||.|||+|.+|..+++.|...|. +++++|.+.
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~ 33 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDT 33 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCC
Confidence 68999999999999999999997 789988763
No 424
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=95.23 E-value=0.028 Score=54.45 Aligned_cols=38 Identities=29% Similarity=0.261 Sum_probs=33.5
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593 28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH 65 (335)
Q Consensus 28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~ 65 (335)
.++...|.|||.|..|.++|..|.+.|++|+++|+++.
T Consensus 4 ~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~ 41 (388)
T PRK07494 4 EKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPP 41 (388)
T ss_pred CCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 34556799999999999999999999999999998753
No 425
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=95.23 E-value=0.022 Score=52.98 Aligned_cols=89 Identities=18% Similarity=0.229 Sum_probs=49.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHHc--CCeEEEEcCCCCcHHHHHhC---------CCce-ecChhhH---hhcCCCEEEEe
Q 044593 31 SLKIAVIGFGNFGQFLAKAFARH--HHTLLVHSRSDHSPAVRQQL---------NAPF-FADLNDL---CELHPDVVLLS 95 (335)
Q Consensus 31 ~~kI~IIG~G~mG~siA~~L~~~--G~~V~~~dr~~~~~~~a~~~---------g~~~-~~~~~~~---~~~~aDvVIla 95 (335)
..||++||.|.+--+.-...... |..|.++|++++..+.+++. ++.+ +.+..+. + .++|+|++|
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl-~~~DvV~lA 199 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDL-KEYDVVFLA 199 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG-----SEEEE-
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccccc-ccCCEEEEh
Confidence 35999999999987766555554 45789999999876544321 2222 1222111 2 579999999
Q ss_pred cCch----hHHHHHhhccccccCCccEEEE
Q 044593 96 TSIL----STQSVLKSIPFQRLKRSTLFVD 121 (335)
Q Consensus 96 vp~~----~~~~vl~~l~~~~l~~~~iVvd 121 (335)
.-.. .-.+++..+. ..+++|+.|+-
T Consensus 200 alVg~~~e~K~~Il~~l~-~~m~~ga~l~~ 228 (276)
T PF03059_consen 200 ALVGMDAEPKEEILEHLA-KHMAPGARLVV 228 (276)
T ss_dssp TT-S----SHHHHHHHHH-HHS-TTSEEEE
T ss_pred hhcccccchHHHHHHHHH-hhCCCCcEEEE
Confidence 8777 6788999985 67889987764
No 426
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=95.22 E-value=0.0012 Score=62.32 Aligned_cols=128 Identities=9% Similarity=-0.101 Sum_probs=87.2
Q ss_pred hhhcccCCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhH
Q 044593 22 LHTQYVKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILST 101 (335)
Q Consensus 22 ~~~~~~~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~ 101 (335)
++....-....|+||.|.|.||.+........|+.+++|-+.. ..+.+.+.++...+...+.+ +.. +++.|...-..
T Consensus 353 lS~laivdSw~klGI~p~~hmicstplfri~~Gvsey~f~~pg-lld~~i~~ai~~~sf~~Ddl-Efv-v~~r~wS~~vs 429 (480)
T KOG2380|consen 353 LSLLAIVDSWFKLGIDPYDHMICSTPLFRIFLGVSEYLFLKPG-LLDQTIDAAIHDKSFIKDDL-EFV-VSAREWSSVVS 429 (480)
T ss_pred eeeEEeecchhccccccCCceeecccceeEEeccEEEEecCCc-hHHHHHHHhhccccccchhH-HHH-HHHhHHhhhhh
Confidence 3444444567899999999999999988888899999887653 34445556666555444443 222 44555555555
Q ss_pred HHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCC
Q 044593 102 QSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGP 152 (335)
Q Consensus 102 ~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~ 152 (335)
...++.++++.++..+.+.++-+.+..+-+.+-+.++.+....+.|||+|+
T Consensus 430 ~k~f~~ykkqfl~~q~~F~p~l~ea~~~gN~mi~tll~~~~~~~~~~~~~~ 480 (480)
T KOG2380|consen 430 FKNFDIYKKQFLSVQKFFEPMLPEANLIGNEMIKTLLSHSSDRSAAEKRNT 480 (480)
T ss_pred hhhhHHHHHHHHHHHHHhhhccchhhchhhHHHHHHHHhhhhhhhccccCC
Confidence 566666654556666777888778777777776666666667788999875
No 427
>PRK08374 homoserine dehydrogenase; Provisional
Probab=95.22 E-value=0.045 Score=52.56 Aligned_cols=86 Identities=19% Similarity=0.308 Sum_probs=49.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHH--------cC--CeEE-EEcCCC-----CcH--HH----HHhCCC-c-ee-------c
Q 044593 31 SLKIAVIGFGNFGQFLAKAFAR--------HH--HTLL-VHSRSD-----HSP--AV----RQQLNA-P-FF-------A 79 (335)
Q Consensus 31 ~~kI~IIG~G~mG~siA~~L~~--------~G--~~V~-~~dr~~-----~~~--~~----a~~~g~-~-~~-------~ 79 (335)
.++|+|+|+|++|+.+++.|.+ .| .+|. +.|++. +.. .. ..+.+. . +. .
T Consensus 2 ~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~ 81 (336)
T PRK08374 2 EVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNF 81 (336)
T ss_pred eeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCC
Confidence 4799999999999999998877 46 3443 346442 111 11 111111 0 11 1
Q ss_pred ChhhHh-hcCCCEEEEecCchhHHHHHhhccccccCCccEEE
Q 044593 80 DLNDLC-ELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFV 120 (335)
Q Consensus 80 ~~~~~~-~~~aDvVIlavp~~~~~~vl~~l~~~~l~~~~iVv 120 (335)
+..+++ ..++|+||-+++.....++.... +..|.-|+
T Consensus 82 ~~~ell~~~~~DVvVd~t~~~~a~~~~~~a----l~~G~~VV 119 (336)
T PRK08374 82 SPEEIVEEIDADIVVDVTNDKNAHEWHLEA----LKEGKSVV 119 (336)
T ss_pred CHHHHHhcCCCCEEEECCCcHHHHHHHHHH----HhhCCcEE
Confidence 444554 14689999888776665555544 34555444
No 428
>PRK06392 homoserine dehydrogenase; Provisional
Probab=95.14 E-value=0.033 Score=53.20 Aligned_cols=22 Identities=27% Similarity=0.640 Sum_probs=20.2
Q ss_pred CeEEEEcccHHHHHHHHHHHHc
Q 044593 32 LKIAVIGFGNFGQFLAKAFARH 53 (335)
Q Consensus 32 ~kI~IIG~G~mG~siA~~L~~~ 53 (335)
|||+|||+|++|+.+++.|.+.
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~ 22 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSR 22 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhC
Confidence 5899999999999999999873
No 429
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=95.13 E-value=0.047 Score=52.15 Aligned_cols=64 Identities=16% Similarity=0.158 Sum_probs=42.7
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHHc-CCeEEEEcCCCCcHHHHH-hCCCce-ec----C---hhhHhhcCCCEEEEe
Q 044593 31 SLKIAVIGF-GNFGQFLAKAFARH-HHTLLVHSRSDHSPAVRQ-QLNAPF-FA----D---LNDLCELHPDVVLLS 95 (335)
Q Consensus 31 ~~kI~IIG~-G~mG~siA~~L~~~-G~~V~~~dr~~~~~~~a~-~~g~~~-~~----~---~~~~~~~~aDvVIla 95 (335)
+|||.|.|. |.+|+.++..|.+. |++|++++|+........ ..++.. .. + ..+++ +++|+||-+
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-~~~d~ViH~ 75 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDLVNHPRMHFFEGDITINKEWIEYHV-KKCDVILPL 75 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHhccCCCeEEEeCCCCCCHHHHHHHH-cCCCEEEEC
Confidence 478999995 99999999999886 699999998764322121 122321 11 2 12344 689999953
No 430
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=95.12 E-value=0.085 Score=50.52 Aligned_cols=90 Identities=16% Similarity=0.207 Sum_probs=52.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHHc---CCeEEEEcC-C-CCcHHHHHhC----CC-------------------cee--cC
Q 044593 31 SLKIAVIGFGNFGQFLAKAFARH---HHTLLVHSR-S-DHSPAVRQQL----NA-------------------PFF--AD 80 (335)
Q Consensus 31 ~~kI~IIG~G~mG~siA~~L~~~---G~~V~~~dr-~-~~~~~~a~~~----g~-------------------~~~--~~ 80 (335)
|+||+|=|+|+||..+.+.+.+. ..+|+.+.- . .+......+. |- ... .+
T Consensus 1 ~~ki~INGfGRIGR~~~R~~~~~~~~~~~vvaind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~I~v~~~~d 80 (337)
T PRK07403 1 MIRVAINGFGRIGRNFLRCWLGRENSQLELVAINDTSDPRTNAHLLKYDSMLGKLNADISADENSITVNGKTIKCVSDRN 80 (337)
T ss_pred CeEEEEEccChHHHHHHHHHHhccCCCeEEEEecCCCCHHHHHHHHhhccCCCCCCCcEEEcCCEEEECCEEEEEEEcCC
Confidence 46999999999999999997654 356665532 1 1222222221 10 011 23
Q ss_pred hhhHhhc--CCCEEEEecCchhHHHHHhhccccccCCccEEEEcCC
Q 044593 81 LNDLCEL--HPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLS 124 (335)
Q Consensus 81 ~~~~~~~--~aDvVIlavp~~~~~~vl~~l~~~~l~~~~iVvd~~S 124 (335)
+.++-+. ++|+||.|+......+.... +++.|+..+++++
T Consensus 81 p~~~~W~~~gvDiV~e~tG~f~s~~~a~~----hl~aGak~V~iSa 122 (337)
T PRK07403 81 PLNLPWKEWGIDLIIESTGVFVTKEGASK----HIQAGAKKVLITA 122 (337)
T ss_pred cccCChhhcCCCEEEeccchhhhHHHHHH----HhhCCcEEEEeCC
Confidence 3443223 79999999987765554443 2445666666654
No 431
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=95.11 E-value=0.07 Score=48.58 Aligned_cols=32 Identities=25% Similarity=0.305 Sum_probs=28.8
Q ss_pred eEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCC
Q 044593 33 KIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSD 64 (335)
Q Consensus 33 kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~ 64 (335)
||.|||+|.+|..+++.|...|. +++++|.+.
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~ 33 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDT 33 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 68999999999999999999997 788888763
No 432
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=95.11 E-value=0.025 Score=55.29 Aligned_cols=37 Identities=19% Similarity=0.486 Sum_probs=33.4
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593 29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDH 65 (335)
Q Consensus 29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~ 65 (335)
.+++||.|+| .|.+|..+++.|.+.|++|++++|+..
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~ 95 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKS 95 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechh
Confidence 4578999999 599999999999999999999999864
No 433
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=95.09 E-value=0.021 Score=53.40 Aligned_cols=58 Identities=28% Similarity=0.403 Sum_probs=38.1
Q ss_pred CeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHh-hcCCCEEEEecC
Q 044593 32 LKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLC-ELHPDVVLLSTS 97 (335)
Q Consensus 32 ~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~-~~~aDvVIlavp 97 (335)
|||.|+| .|.+|+.+...|.+.|++|+.++|++-. +.......+++ ....|+||.|.-
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~~d--------l~d~~~~~~~~~~~~pd~Vin~aa 60 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRSDLD--------LTDPEAVAKLLEAFKPDVVINCAA 60 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTTCS---------TTSHHHHHHHHHHH--SEEEE---
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCchhcC--------CCCHHHHHHHHHHhCCCeEeccce
Confidence 7999999 6999999999999999999999877321 11111122222 136899999863
No 434
>PLN02650 dihydroflavonol-4-reductase
Probab=95.09 E-value=0.076 Score=50.76 Aligned_cols=37 Identities=19% Similarity=0.257 Sum_probs=32.8
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCc
Q 044593 30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHS 66 (335)
Q Consensus 30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~ 66 (335)
..++|.|.| .|.+|+.++..|.+.|++|++.+|+...
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~ 41 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPAN 41 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcch
Confidence 467899999 6999999999999999999998887654
No 435
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=95.09 E-value=0.033 Score=52.41 Aligned_cols=33 Identities=27% Similarity=0.351 Sum_probs=29.1
Q ss_pred eEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593 33 KIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH 65 (335)
Q Consensus 33 kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~ 65 (335)
+|.|||.|.-|..+|..|+++|++|.++++++.
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~ 35 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPD 35 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence 699999999999999999999999999998764
No 436
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.06 E-value=0.13 Score=51.18 Aligned_cols=64 Identities=17% Similarity=0.248 Sum_probs=45.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHHc--CCeEEEEcCCCCcH--HHHHhCCCceecC--hhhHhhcCCCEEEEec
Q 044593 31 SLKIAVIGFGNFGQFLAKAFARH--HHTLLVHSRSDHSP--AVRQQLNAPFFAD--LNDLCELHPDVVLLST 96 (335)
Q Consensus 31 ~~kI~IIG~G~mG~siA~~L~~~--G~~V~~~dr~~~~~--~~a~~~g~~~~~~--~~~~~~~~aDvVIlav 96 (335)
.++|.|||+|..|.+.+..|.+. |++|+++|.++... +... .|+..... ..+.+ .++|+||++.
T Consensus 7 ~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~-~g~~~~~g~~~~~~~-~~~d~vV~Sp 76 (438)
T PRK04663 7 IKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLP-EDVELHSGGWNLEWL-LEADLVVTNP 76 (438)
T ss_pred CceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhh-cCCEEEeCCCChHHh-ccCCEEEECC
Confidence 36899999999999999999887 58999999765322 2222 37755211 22334 6799998855
No 437
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=95.06 E-value=0.036 Score=53.06 Aligned_cols=91 Identities=19% Similarity=0.199 Sum_probs=53.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCC--eEEEEcCCC----CcHHHHHhC----C-------------------Cce--ec
Q 044593 31 SLKIAVIGFGNFGQFLAKAFARHHH--TLLVHSRSD----HSPAVRQQL----N-------------------APF--FA 79 (335)
Q Consensus 31 ~~kI~IIG~G~mG~siA~~L~~~G~--~V~~~dr~~----~~~~~a~~~----g-------------------~~~--~~ 79 (335)
++||+|.|+|.||..+.+.|.+.++ ++.++..|. +......+. | +.. ..
T Consensus 1 ~~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind~~~~~~~ayll~ydS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~ 80 (336)
T PRK13535 1 TIRVAINGFGRIGRNVLRALYESGRRAEITVVAINELADAEGMAHLLKYDTSHGRFAWDVRQERDQLFVGDDAIRLLHER 80 (336)
T ss_pred CeEEEEECcCHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEcC
Confidence 3689999999999999999987532 344442221 111111111 0 001 12
Q ss_pred ChhhHhh--cCCCEEEEecCchhHHHHHhhccccccCCccEEEEcCCC
Q 044593 80 DLNDLCE--LHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 80 ~~~~~~~--~~aDvVIlavp~~~~~~vl~~l~~~~l~~~~iVvd~~Sv 125 (335)
++.++.+ .++|+||.|+......+..... +..|+.++++++.
T Consensus 81 ~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~----l~aGAk~V~iSap 124 (336)
T PRK13535 81 DIASLPWRELGVDVVLDCTGVYGSREDGEAH----IAAGAKKVLFSHP 124 (336)
T ss_pred CcccCcccccCCCEEEEccchhhhHHHHHHH----HHcCCEEEEecCC
Confidence 4444332 4799999999887666655433 4567777776543
No 438
>PRK05868 hypothetical protein; Validated
Probab=95.04 E-value=0.033 Score=53.98 Aligned_cols=35 Identities=20% Similarity=0.147 Sum_probs=32.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593 31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH 65 (335)
Q Consensus 31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~ 65 (335)
|++|.|||.|..|.++|..|++.|++|+++++.+.
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~ 35 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG 35 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence 46899999999999999999999999999998764
No 439
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=95.02 E-value=0.044 Score=39.80 Aligned_cols=30 Identities=27% Similarity=0.306 Sum_probs=27.5
Q ss_pred EEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593 36 VIGFGNFGQFLAKAFARHHHTLLVHSRSDH 65 (335)
Q Consensus 36 IIG~G~mG~siA~~L~~~G~~V~~~dr~~~ 65 (335)
|||.|.-|.+.|..|++.|++|+++++++.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 899999999999999999999999999875
No 440
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=95.02 E-value=0.033 Score=51.24 Aligned_cols=63 Identities=17% Similarity=0.195 Sum_probs=43.3
Q ss_pred EEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCcee--cChhhHhhcCCCEEEEecC
Q 044593 34 IAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFF--ADLNDLCELHPDVVLLSTS 97 (335)
Q Consensus 34 I~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~--~~~~~~~~~~aDvVIlavp 97 (335)
|.|.| +|.+|+.+++.|.+.|++|++++|++.........++... ....+.+ .++|+||.+..
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~D~Vvh~a~ 66 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTKWEGYKPWAPLAESEAL-EGADAVINLAG 66 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCcccceeeecccccchhhhc-CCCCEEEECCC
Confidence 46888 6999999999999999999999998765422111122111 1222334 67999998774
No 441
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=95.01 E-value=0.1 Score=51.98 Aligned_cols=37 Identities=32% Similarity=0.378 Sum_probs=33.4
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCC
Q 044593 28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSD 64 (335)
Q Consensus 28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~ 64 (335)
+...++|.|||.|..|.+.|..|.+.|++|+++|+++
T Consensus 137 ~~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~ 173 (457)
T PRK11749 137 PKTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARD 173 (457)
T ss_pred ccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Confidence 3457899999999999999999999999999999864
No 442
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=95.01 E-value=0.064 Score=52.70 Aligned_cols=31 Identities=19% Similarity=0.452 Sum_probs=25.6
Q ss_pred CeEEEEcccHHHHHHHHHHHH-cCCeEEE-EcC
Q 044593 32 LKIAVIGFGNFGQFLAKAFAR-HHHTLLV-HSR 62 (335)
Q Consensus 32 ~kI~IIG~G~mG~siA~~L~~-~G~~V~~-~dr 62 (335)
+||||.|+|.||..+++.+.. .+.+|+. .|+
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp 118 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDP 118 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCC
Confidence 599999999999999999875 5678766 453
No 443
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=94.99 E-value=0.073 Score=50.99 Aligned_cols=89 Identities=18% Similarity=0.161 Sum_probs=55.1
Q ss_pred CeEEEEcccHHHHHHHHHHHHc-CCeEEEEcC---CCCcHHHHHhC----CC-------------------ce--ecChh
Q 044593 32 LKIAVIGFGNFGQFLAKAFARH-HHTLLVHSR---SDHSPAVRQQL----NA-------------------PF--FADLN 82 (335)
Q Consensus 32 ~kI~IIG~G~mG~siA~~L~~~-G~~V~~~dr---~~~~~~~a~~~----g~-------------------~~--~~~~~ 82 (335)
+||+|-|+|.||..+.+.+.+. +.+|+.++- +.+......+. |- .. ..++.
T Consensus 3 ~ki~INGfGRIGr~v~r~~~~~~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~~~~~~dp~ 82 (337)
T PTZ00023 3 VKLGINGFGRIGRLVFRAALEREDVEVVAINDPFMTLDYMCYLLKYDSVHGSLPAEVSVTDGFLMIGSKKVHVFFEKDPA 82 (337)
T ss_pred eEEEEECcChHHHHHHHHHHhcCCeEEEEecCCCCChHHhhhhheeecCCCCCCCcEEecCCEEEECCeEEEEEeCCChh
Confidence 6999999999999999997654 467766531 22233322221 11 01 12344
Q ss_pred hHhh--cCCCEEEEecCchhHHHHHhhccccccCCccEEEEcCC
Q 044593 83 DLCE--LHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLS 124 (335)
Q Consensus 83 ~~~~--~~aDvVIlavp~~~~~~vl~~l~~~~l~~~~iVvd~~S 124 (335)
++-+ .++|+||.|+......+.... +++.|+.++|+++
T Consensus 83 ~lpW~~~gvDiVle~tG~~~s~~~a~~----~l~aGak~V~iSa 122 (337)
T PTZ00023 83 AIPWGKNGVDVVCESTGVFLTKEKAQA----HLKGGAKKVIMSA 122 (337)
T ss_pred hCCccccCCCEEEEecchhcCHHHHHH----HhhCCCEEEEeCC
Confidence 4422 378999999987766555543 3557777777765
No 444
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=94.97 E-value=0.098 Score=49.30 Aligned_cols=37 Identities=16% Similarity=0.204 Sum_probs=32.4
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCc
Q 044593 30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHS 66 (335)
Q Consensus 30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~ 66 (335)
.+++|.|.| .|.||+.++..|.+.|++|++.+|++..
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~ 41 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKD 41 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcc
Confidence 467899999 6999999999999999999888887653
No 445
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=94.96 E-value=0.11 Score=52.39 Aligned_cols=35 Identities=40% Similarity=0.512 Sum_probs=32.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCC
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSD 64 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~ 64 (335)
..++|.|||.|..|.+.|..|++.|++|+++++.+
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~ 176 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFERED 176 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence 45799999999999999999999999999998764
No 446
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=94.92 E-value=0.14 Score=45.75 Aligned_cols=78 Identities=17% Similarity=0.110 Sum_probs=56.9
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC-c-HHHHHhCCCcee---cChhhHhhcCCCEEEEecCchhHHH
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH-S-PAVRQQLNAPFF---ADLNDLCELHPDVVLLSTSILSTQS 103 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~-~-~~~a~~~g~~~~---~~~~~~~~~~aDvVIlavp~~~~~~ 103 (335)
..+++|.|||.|.+|..=++.|.+.|.+|+++..... . ...+.+.++... -+..++ .++++||.||+.....+
T Consensus 10 l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~~--~~~~lviaAt~d~~ln~ 87 (210)
T COG1648 10 LEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAEDL--DDAFLVIAATDDEELNE 87 (210)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhhh--cCceEEEEeCCCHHHHH
Confidence 3578999999999999999999999999999987762 2 233444443321 233344 46999999999987765
Q ss_pred HHhhc
Q 044593 104 VLKSI 108 (335)
Q Consensus 104 vl~~l 108 (335)
-+.+.
T Consensus 88 ~i~~~ 92 (210)
T COG1648 88 RIAKA 92 (210)
T ss_pred HHHHH
Confidence 55544
No 447
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=94.91 E-value=0.079 Score=52.39 Aligned_cols=68 Identities=15% Similarity=0.187 Sum_probs=46.0
Q ss_pred CeEEEEcccHHHH-HHHHHHHHc-----CCeEEEEcCC-CCcHHH--------HHhCC----CceecChhhHhhcCCCEE
Q 044593 32 LKIAVIGFGNFGQ-FLAKAFARH-----HHTLLVHSRS-DHSPAV--------RQQLN----APFFADLNDLCELHPDVV 92 (335)
Q Consensus 32 ~kI~IIG~G~mG~-siA~~L~~~-----G~~V~~~dr~-~~~~~~--------a~~~g----~~~~~~~~~~~~~~aDvV 92 (335)
|||+|||.|..-+ .+...|... +-+|+.+|++ ++..+. ..+.| +..++|..+++ .++|+|
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~al-~gadfV 79 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTDRREAL-EGADFV 79 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHh-CCCCEE
Confidence 6999999988633 344555442 2489999999 555432 12233 23567888888 899999
Q ss_pred EEecCchh
Q 044593 93 LLSTSILS 100 (335)
Q Consensus 93 Ilavp~~~ 100 (335)
|.+.-...
T Consensus 80 i~~~~vg~ 87 (419)
T cd05296 80 FTQIRVGG 87 (419)
T ss_pred EEEEeeCC
Confidence 99886544
No 448
>PRK07411 hypothetical protein; Validated
Probab=94.90 E-value=0.06 Score=52.74 Aligned_cols=36 Identities=17% Similarity=0.117 Sum_probs=31.6
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCC
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSD 64 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~ 64 (335)
.+..||+|||+|.+|+.++..|...|. +++++|.+.
T Consensus 36 L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ 72 (390)
T PRK07411 36 LKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDV 72 (390)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 346799999999999999999999997 788888763
No 449
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=94.89 E-value=0.07 Score=52.31 Aligned_cols=35 Identities=23% Similarity=0.180 Sum_probs=31.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCC
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSD 64 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~ 64 (335)
+..||.|||+|.+|+.++..|...|. +++++|.+.
T Consensus 41 ~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ 76 (392)
T PRK07878 41 KNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDV 76 (392)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 46799999999999999999999997 788998763
No 450
>PRK10537 voltage-gated potassium channel; Provisional
Probab=94.86 E-value=0.14 Score=50.14 Aligned_cols=69 Identities=10% Similarity=-0.013 Sum_probs=48.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce----ecChhhHh---hcCCCEEEEecCchhH
Q 044593 31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF----FADLNDLC---ELHPDVVLLSTSILST 101 (335)
Q Consensus 31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~----~~~~~~~~---~~~aDvVIlavp~~~~ 101 (335)
...|.|+|+|.+|..+++.|.+.|.+++++|.+.. +...+.|... .++.+.+. .++|+.||++++.+..
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~~--~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~~ 315 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQAVTVIVPLGL--EHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRDNDAD 315 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCEEEEECchh--hhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCChHH
Confidence 46799999999999999999999999999987632 2233334431 12222221 1689999999887764
No 451
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.82 E-value=0.082 Score=49.88 Aligned_cols=39 Identities=15% Similarity=0.249 Sum_probs=31.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHH
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPA 68 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~ 68 (335)
.+++|+|+|+|-+|..=.+..++.|++|+++|++....+
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kke 219 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKE 219 (360)
T ss_pred CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHH
Confidence 478999999988887666666778999999999985544
No 452
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=94.81 E-value=0.19 Score=47.98 Aligned_cols=47 Identities=13% Similarity=0.194 Sum_probs=41.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCc
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAP 76 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~ 76 (335)
...+|.|+|.|.+|...+..++..|.+|++.+++++..+.++++|+.
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga~ 212 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGAD 212 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCc
Confidence 46799999999999999999999999999999998888778777763
No 453
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=94.81 E-value=0.11 Score=49.53 Aligned_cols=72 Identities=11% Similarity=0.184 Sum_probs=54.8
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHHHHHhCCCceecChhhH----------hhcCCCEEEEecC
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPAVRQQLNAPFFADLNDL----------CELHPDVVLLSTS 97 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~~a~~~g~~~~~~~~~~----------~~~~aDvVIlavp 97 (335)
..+..++|+|+|.+|-+....++..|. .|+++|.++++.++|+++|...+-+..+. ....+|..|-|+-
T Consensus 184 ~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~~~~vv~~i~~~T~gG~d~~~e~~G 263 (366)
T COG1062 184 EPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPKEVDDVVEAIVELTDGGADYAFECVG 263 (366)
T ss_pred CCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecchhhhhHHHHHHHhcCCCCCEEEEccC
Confidence 346789999999999999999999997 78999999999999999998754332211 1025677777765
Q ss_pred chh
Q 044593 98 ILS 100 (335)
Q Consensus 98 ~~~ 100 (335)
...
T Consensus 264 ~~~ 266 (366)
T COG1062 264 NVE 266 (366)
T ss_pred CHH
Confidence 443
No 454
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=94.81 E-value=0.054 Score=50.10 Aligned_cols=63 Identities=24% Similarity=0.210 Sum_probs=44.3
Q ss_pred eEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCc----eecChh---hHhh-----cC-CCEEEEecCc
Q 044593 33 KIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAP----FFADLN---DLCE-----LH-PDVVLLSTSI 98 (335)
Q Consensus 33 kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~----~~~~~~---~~~~-----~~-aDvVIlavp~ 98 (335)
+|.|+| .|.+|+.++..|.+.|++|.+..|+++... ..++. ...|.+ +++. .. +|.|+++.|.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~---~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~ 77 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSA---GPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPP 77 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCcccc---CCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCC
Confidence 588999 599999999999999999999999986432 12221 122322 2220 24 8999988774
No 455
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=94.80 E-value=0.089 Score=50.27 Aligned_cols=89 Identities=18% Similarity=0.193 Sum_probs=53.5
Q ss_pred CeEEEEcccHHHHHHHHHHHHc-CCeEEEEc-CCC-CcHHHHHhC----CC-------------------ce--ecChhh
Q 044593 32 LKIAVIGFGNFGQFLAKAFARH-HHTLLVHS-RSD-HSPAVRQQL----NA-------------------PF--FADLND 83 (335)
Q Consensus 32 ~kI~IIG~G~mG~siA~~L~~~-G~~V~~~d-r~~-~~~~~a~~~----g~-------------------~~--~~~~~~ 83 (335)
+||+|-|+|.||..+.+.+.+. +.+|+.++ ..+ +......+. |- .. ..++.+
T Consensus 3 ~~i~inGfGRIGr~~~r~~~~~~~~~vvaiNd~~~~~~~ayll~yDs~hg~~~~~v~~~~~~l~v~g~~I~v~~~~dp~~ 82 (331)
T PRK15425 3 IKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPAN 82 (331)
T ss_pred eEEEEEeeChHHHHHHHHHHHCCCCEEEEEecCCCHHHHHHHHccccCCCCcCCcEEecCCEEEECCeEEEEEEcCChhh
Confidence 5999999999999999997654 56777663 221 222323232 10 01 114444
Q ss_pred Hhhc--CCCEEEEecCchhHHHHHhhccccccCCccEEEEcCC
Q 044593 84 LCEL--HPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLS 124 (335)
Q Consensus 84 ~~~~--~aDvVIlavp~~~~~~vl~~l~~~~l~~~~iVvd~~S 124 (335)
+.+. ++|+||.|+......+.... +++.|+.++|+++
T Consensus 83 ~~w~~~gvDiVle~tG~f~s~~~a~~----hl~aGak~V~iSa 121 (331)
T PRK15425 83 LKWDEVGVDVVAEATGLFLTDETARK----HITAGAKKVVMTG 121 (331)
T ss_pred CcccccCCCEEEEecchhhcHHHHHH----HHHCCCEEEEeCC
Confidence 3323 78888888876655554432 3456777777764
No 456
>PRK09414 glutamate dehydrogenase; Provisional
Probab=94.80 E-value=0.072 Score=52.93 Aligned_cols=94 Identities=7% Similarity=0.015 Sum_probs=57.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEE-c----------CCCCcHHHHH-hC-C-Cce--------ecChhhHhh
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVH-S----------RSDHSPAVRQ-QL-N-APF--------FADLNDLCE 86 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~-d----------r~~~~~~~a~-~~-g-~~~--------~~~~~~~~~ 86 (335)
.++++|+|.|+|++|+..|+.|.+.|.+|+++ | .|.+.+.... +. | +.. ..+.+++..
T Consensus 230 l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~i~~ 309 (445)
T PRK09414 230 FEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGSPWS 309 (445)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCccccc
Confidence 46789999999999999999999999998876 7 3322221111 11 1 110 112333332
Q ss_pred cCCCEEEEecCchhH-HHHHhhccccccCCccEEEEcCCC
Q 044593 87 LHPDVVLLSTSILST-QSVLKSIPFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 87 ~~aDvVIlavp~~~~-~~vl~~l~~~~l~~~~iVvd~~Sv 125 (335)
.+||++|-|.....+ .+-...+. + ..-.+|+..++.
T Consensus 310 ~d~DVliPaAl~n~It~~~a~~i~-~--~~akiIvEgAN~ 346 (445)
T PRK09414 310 VPCDIALPCATQNELDEEDAKTLI-A--NGVKAVAEGANM 346 (445)
T ss_pred cCCcEEEecCCcCcCCHHHHHHHH-H--cCCeEEEcCCCC
Confidence 479999999887764 34444441 0 012466666544
No 457
>PLN02477 glutamate dehydrogenase
Probab=94.78 E-value=0.14 Score=50.33 Aligned_cols=91 Identities=13% Similarity=0.107 Sum_probs=55.3
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCeEE-EEcCC----------CCcH-HHHHhCC-Cce-----ecChhhHhhcCCC
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHHHTLL-VHSRS----------DHSP-AVRQQLN-APF-----FADLNDLCELHPD 90 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~-~~dr~----------~~~~-~~a~~~g-~~~-----~~~~~~~~~~~aD 90 (335)
.++++|+|.|+|++|+.+|+.|.+.|.+|+ +.|.+ .+.+ +...+.| +.. .-+.+++...+||
T Consensus 204 l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~~~~D 283 (410)
T PLN02477 204 IAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPDDILVEPCD 283 (410)
T ss_pred ccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEecCccceecccc
Confidence 467899999999999999999999999987 55765 2211 1111111 110 1123333325899
Q ss_pred EEEEecCchh-HHHHHhhccccccCCccEEEEcCCC
Q 044593 91 VVLLSTSILS-TQSVLKSIPFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 91 vVIlavp~~~-~~~vl~~l~~~~l~~~~iVvd~~Sv 125 (335)
++|-|.-... ..+....+. -.+|+..++.
T Consensus 284 vliP~Al~~~I~~~na~~i~------ak~I~egAN~ 313 (410)
T PLN02477 284 VLIPAALGGVINKENAADVK------AKFIVEAANH 313 (410)
T ss_pred EEeeccccccCCHhHHHHcC------CcEEEeCCCC
Confidence 9998854444 244444442 2366666544
No 458
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.76 E-value=0.1 Score=52.21 Aligned_cols=65 Identities=20% Similarity=0.239 Sum_probs=43.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhC-CCcee-cChhhHhhcCCCEEEEec
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQL-NAPFF-ADLNDLCELHPDVVLLST 96 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~-g~~~~-~~~~~~~~~~aDvVIlav 96 (335)
.++||+|+|+|.-|.+.++.|.+ |.+|+++|.++.......+. ..... ....+.. .++|+||++-
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~vV~SP 71 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRW-QNLDKIVLSP 71 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHh-hCCCEEEECC
Confidence 46799999999999999999995 99999999654432212221 11111 1122334 6799998854
No 459
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=94.75 E-value=0.066 Score=51.17 Aligned_cols=37 Identities=19% Similarity=0.129 Sum_probs=33.2
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCc
Q 044593 30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHS 66 (335)
Q Consensus 30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~ 66 (335)
++++|.|.| .|.+|+.++..|.+.|++|++++|++..
T Consensus 3 ~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~ 40 (349)
T TIGR02622 3 QGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPT 40 (349)
T ss_pred CCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCcc
Confidence 468999999 6999999999999999999999988753
No 460
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=94.75 E-value=0.15 Score=48.00 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=32.3
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCc
Q 044593 30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHS 66 (335)
Q Consensus 30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~ 66 (335)
.+++|.|.| .|.+|+.++..|.+.|++|++..|+...
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~ 41 (322)
T PLN02986 4 GGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTD 41 (322)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcc
Confidence 467999999 6999999999999999999988777643
No 461
>PRK07538 hypothetical protein; Provisional
Probab=94.73 E-value=0.04 Score=54.03 Aligned_cols=34 Identities=21% Similarity=0.245 Sum_probs=31.9
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593 32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH 65 (335)
Q Consensus 32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~ 65 (335)
|+|.|||.|..|.++|..|++.|++|+++++.+.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence 6899999999999999999999999999998764
No 462
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=94.73 E-value=0.14 Score=49.12 Aligned_cols=35 Identities=20% Similarity=0.459 Sum_probs=27.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHHc-CCeEEE-EcCCCC
Q 044593 31 SLKIAVIGFGNFGQFLAKAFARH-HHTLLV-HSRSDH 65 (335)
Q Consensus 31 ~~kI~IIG~G~mG~siA~~L~~~-G~~V~~-~dr~~~ 65 (335)
.+||+|+|+|.||...++.+.+. +.++++ .|++.+
T Consensus 5 ~lrVaI~G~GrIGr~~~r~~~~~~~velvaI~D~~~~ 41 (338)
T PLN02358 5 KIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFIT 41 (338)
T ss_pred ceEEEEEeecHHHHHHHHHHhhCCCcEEEEEeCCCCC
Confidence 47999999999999999998764 467654 566543
No 463
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=94.73 E-value=0.046 Score=53.09 Aligned_cols=34 Identities=29% Similarity=0.404 Sum_probs=31.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCC
Q 044593 31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSD 64 (335)
Q Consensus 31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~ 64 (335)
..+|.|||.|..|.++|..|.+.|++|+++|+.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 3589999999999999999999999999999764
No 464
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=94.72 E-value=0.032 Score=52.82 Aligned_cols=89 Identities=10% Similarity=0.063 Sum_probs=56.2
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHHcCCe---EEEEcCC-CCcHHHHHhCCCce-ecChh-hHhhcCCCEEEEecCchhHH
Q 044593 30 TSLKIAVIG-FGNFGQFLAKAFARHHHT---LLVHSRS-DHSPAVRQQLNAPF-FADLN-DLCELHPDVVLLSTSILSTQ 102 (335)
Q Consensus 30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~---V~~~dr~-~~~~~~a~~~g~~~-~~~~~-~~~~~~aDvVIlavp~~~~~ 102 (335)
..++|+| | .|.+|..+-..|.+.++. +..++.. ...-+...-.|-.. ..+++ +.. ++.|++|+ .+.+...
T Consensus 2 ~~~~iAi-GATg~VG~~~l~~Leer~fpv~~l~l~~s~~~s~gk~i~f~g~~~~V~~l~~~~f-~~vDia~f-ag~~~s~ 78 (322)
T PRK06901 2 ATLNIAI-AAEFELSEKLLEALEQSDLEIEQISIVEIEPFGEEQGIRFNNKAVEQIAPEEVEW-ADFNYVFF-AGKMAQA 78 (322)
T ss_pred CcceEEE-ecCcHHHHHHHHHHHhcCCchhheeecccccccCCCEEEECCEEEEEEECCccCc-ccCCEEEE-cCHHHHH
Confidence 4678999 9 599999999999999874 4454433 11111010011111 11121 123 68999999 8877666
Q ss_pred HHHhhccccccCCccEEEEcCCC
Q 044593 103 SVLKSIPFQRLKRSTLFVDVLSV 125 (335)
Q Consensus 103 ~vl~~l~~~~l~~~~iVvd~~Sv 125 (335)
++.... .+.|++|+|.+|.
T Consensus 79 ~~ap~a----~~aG~~VIDnSsa 97 (322)
T PRK06901 79 EHLAQA----AEAGCIVIDLYGI 97 (322)
T ss_pred HHHHHH----HHCCCEEEECChH
Confidence 666644 4579999999874
No 465
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=94.71 E-value=0.058 Score=49.89 Aligned_cols=62 Identities=19% Similarity=0.276 Sum_probs=42.7
Q ss_pred EEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhc-CCCEEEEec
Q 044593 34 IAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCEL-HPDVVLLST 96 (335)
Q Consensus 34 I~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~-~aDvVIlav 96 (335)
|.|-| .|.||..+...|.+.||+|++..|++.....-....+...+.+++.. . ++|+||--.
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~~~~~v~~~~~~~~~~-~~~~DavINLA 64 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGHQVTILTRRPPKASQNLHPNVTLWEGLADAL-TLGIDAVINLA 64 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCCeEEEEEcCCcchhhhcCccccccchhhhcc-cCCCCEEEECC
Confidence 45666 89999999999999999999999998655422222222223334443 3 599999643
No 466
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=94.70 E-value=0.31 Score=46.33 Aligned_cols=93 Identities=11% Similarity=0.074 Sum_probs=66.4
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHHcCCeE-EEEcCCCCcHHHHHhCCCceecChhhHhhcC--CCEEEEecCchhHHHHH
Q 044593 30 TSLKIAVIG-FGNFGQFLAKAFARHHHTL-LVHSRSDHSPAVRQQLNAPFFADLNDLCELH--PDVVLLSTSILSTQSVL 105 (335)
Q Consensus 30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V-~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~--aDvVIlavp~~~~~~vl 105 (335)
+..||.|-| .|.-|+..+....+.|-+| -++.+...-.+ ....|+..+.+..++. +. +|+.++++|...+.+.+
T Consensus 28 ~~t~v~vqGitg~~g~~h~~~~~~ygt~iv~GV~Pgkgg~~-v~~~Gvpvy~sv~ea~-~~~~~D~avI~VPa~~v~dai 105 (317)
T PTZ00187 28 KNTKVICQGITGKQGTFHTEQAIEYGTKMVGGVNPKKAGTT-HLKHGLPVFATVKEAK-KATGADASVIYVPPPHAASAI 105 (317)
T ss_pred CCCeEEEecCCChHHHHHHHHHHHhCCcEEEEECCCCCCce-EecCCccccCCHHHHh-cccCCCEEEEecCHHHHHHHH
Confidence 467999999 6999999999999999875 45666541111 1124788888998887 55 89999999999988888
Q ss_pred hhccccccCCccEEEEcCCCC
Q 044593 106 KSIPFQRLKRSTLFVDVLSVK 126 (335)
Q Consensus 106 ~~l~~~~l~~~~iVvd~~SvK 126 (335)
.+... ..-..+|+-+.+..
T Consensus 106 ~Ea~~--aGI~~~ViiteGfp 124 (317)
T PTZ00187 106 IEAIE--AEIPLVVCITEGIP 124 (317)
T ss_pred HHHHH--cCCCEEEEECCCCc
Confidence 77632 22233455444443
No 467
>PRK06847 hypothetical protein; Provisional
Probab=94.70 E-value=0.049 Score=52.38 Aligned_cols=36 Identities=19% Similarity=0.098 Sum_probs=32.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH 65 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~ 65 (335)
++++|.|||.|..|.++|..|++.|++|+++++++.
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 357899999999999999999999999999998764
No 468
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=94.69 E-value=0.4 Score=45.25 Aligned_cols=93 Identities=8% Similarity=0.061 Sum_probs=66.3
Q ss_pred CCCCCeEEEEc-ccHHHHHHHHHHHHcCCeE-EEEcCCCCcHHHHHhCCCceecChhhHhhcC--CCEEEEecCchhHHH
Q 044593 28 KSTSLKIAVIG-FGNFGQFLAKAFARHHHTL-LVHSRSDHSPAVRQQLNAPFFADLNDLCELH--PDVVLLSTSILSTQS 103 (335)
Q Consensus 28 ~~~~~kI~IIG-~G~mG~siA~~L~~~G~~V-~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~--aDvVIlavp~~~~~~ 103 (335)
-.+..||.|.| .|..|+..-..+.+.|-+| -+++......+ -.|+..+.+..++. .. .|+.|+++|...+.+
T Consensus 9 ~~~~~~v~~~gi~~~~~~~~~~~~~~ygt~~~~gV~p~~~~~~---i~G~~~y~sv~dlp-~~~~~DlAvI~vPa~~v~~ 84 (300)
T PLN00125 9 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---HLGLPVFNTVAEAK-AETKANASVIYVPPPFAAA 84 (300)
T ss_pred ecCCCeEEEecCCCHHHHHHHHHHHHhCCcEEEEECCCCCCce---EcCeeccCCHHHHh-hccCCCEEEEecCHHHHHH
Confidence 34568999999 7999999999999999775 45666531111 13777888888876 44 799999999999999
Q ss_pred HHhhccccccCCccEEEEcCCCC
Q 044593 104 VLKSIPFQRLKRSTLFVDVLSVK 126 (335)
Q Consensus 104 vl~~l~~~~l~~~~iVvd~~SvK 126 (335)
++++... ..-..+|+-.++..
T Consensus 85 al~e~~~--~Gvk~~vIisaGf~ 105 (300)
T PLN00125 85 AILEAME--AELDLVVCITEGIP 105 (300)
T ss_pred HHHHHHH--cCCCEEEEECCCCC
Confidence 9988742 22233444444443
No 469
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=94.69 E-value=0.71 Score=44.22 Aligned_cols=43 Identities=14% Similarity=0.322 Sum_probs=33.1
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHH-cCCeEE-EEcCCCCcHHHH
Q 044593 28 KSTSLKIAVIGFGNFGQFLAKAFAR-HHHTLL-VHSRSDHSPAVR 70 (335)
Q Consensus 28 ~~~~~kI~IIG~G~mG~siA~~L~~-~G~~V~-~~dr~~~~~~~a 70 (335)
..+.-|||+||+|.||+-++..... .|++|. +.|++....+.+
T Consensus 14 ~G~PiRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A 58 (438)
T COG4091 14 EGKPIRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRA 58 (438)
T ss_pred cCCceEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHH
Confidence 4567899999999999999988776 588875 458887655444
No 470
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=94.69 E-value=0.3 Score=44.97 Aligned_cols=34 Identities=18% Similarity=0.329 Sum_probs=29.9
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCeEE-EEc
Q 044593 28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLL-VHS 61 (335)
Q Consensus 28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~-~~d 61 (335)
..++.||+|.|+|++|+..|+.|.+.|.+|+ +.|
T Consensus 35 ~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD 69 (254)
T cd05313 35 TLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSD 69 (254)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 3467899999999999999999999999887 545
No 471
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=94.67 E-value=0.25 Score=46.86 Aligned_cols=89 Identities=20% Similarity=0.200 Sum_probs=60.9
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceec---Ch---hhHhhcCCCEEEEecCchh-H
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFA---DL---NDLCELHPDVVLLSTSILS-T 101 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~---~~---~~~~~~~aDvVIlavp~~~-~ 101 (335)
....+|.|.|.|.+|..++..++..|.+|++++++++..+.+.+.|+...- +. .... ..+|+++-|++... .
T Consensus 168 ~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~-~~~d~v~~~~g~~~~~ 246 (337)
T cd05283 168 GPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGADEFIATKDPEAMKKAA-GSLDLIIDTVSASHDL 246 (337)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEecCcchhhhhhcc-CCceEEEECCCCcchH
Confidence 346789999999999999999999999999999988777777777764211 11 1112 45788888877653 3
Q ss_pred HHHHhhccccccCCccEEEEcC
Q 044593 102 QSVLKSIPFQRLKRSTLFVDVL 123 (335)
Q Consensus 102 ~~vl~~l~~~~l~~~~iVvd~~ 123 (335)
...+..+ +++..+++++
T Consensus 247 ~~~~~~l-----~~~G~~v~~g 263 (337)
T cd05283 247 DPYLSLL-----KPGGTLVLVG 263 (337)
T ss_pred HHHHHHh-----cCCCEEEEEe
Confidence 4444333 3445566654
No 472
>PRK05866 short chain dehydrogenase; Provisional
Probab=94.66 E-value=0.091 Score=49.11 Aligned_cols=39 Identities=26% Similarity=0.345 Sum_probs=33.8
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcH
Q 044593 29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSP 67 (335)
Q Consensus 29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~ 67 (335)
++.++|.|.| .|.+|..+|..|.+.|++|++.+|+++..
T Consensus 38 ~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l 77 (293)
T PRK05866 38 LTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLL 77 (293)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHH
Confidence 3457899999 59999999999999999999999987543
No 473
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=94.63 E-value=0.046 Score=52.93 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=32.1
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHc---CCeEEEEcCC
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARH---HHTLLVHSRS 63 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~---G~~V~~~dr~ 63 (335)
|+..+|.|||.|..|.++|..|++. |++|+++|+.
T Consensus 1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 4567899999999999999999998 9999999994
No 474
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=94.62 E-value=0.17 Score=48.75 Aligned_cols=47 Identities=17% Similarity=0.247 Sum_probs=40.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHHHHHhCCCc
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPAVRQQLNAP 76 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~~a~~~g~~ 76 (335)
...+|.|+|.|.+|...+..++..|. +|++.+++++..+.++++|+.
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~ 238 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGAT 238 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCc
Confidence 35789999999999999999899998 699999998888888888764
No 475
>PRK07588 hypothetical protein; Provisional
Probab=94.59 E-value=0.047 Score=53.02 Aligned_cols=34 Identities=29% Similarity=0.331 Sum_probs=31.5
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593 32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH 65 (335)
Q Consensus 32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~ 65 (335)
++|.|||.|..|.++|..|++.|++|+++++.++
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence 5899999999999999999999999999997754
No 476
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=94.59 E-value=0.07 Score=49.16 Aligned_cols=56 Identities=20% Similarity=0.313 Sum_probs=39.6
Q ss_pred eEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhc--CCCEEEEecC
Q 044593 33 KIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCEL--HPDVVLLSTS 97 (335)
Q Consensus 33 kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~--~aDvVIlavp 97 (335)
||.|+| .|.+|+.++..|.+.|++|++++|+.- .+....+..+++ . +.|+||.+..
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~~~--------d~~~~~~~~~~~-~~~~~d~vi~~a~ 59 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVVALTSSQL--------DLTDPEALERLL-RAIRPDAVVNTAA 59 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCccc--------CCCCHHHHHHHH-HhCCCCEEEECCc
Confidence 689999 599999999999999999999998621 111111223333 3 3599998764
No 477
>PRK08013 oxidoreductase; Provisional
Probab=94.58 E-value=0.052 Score=53.07 Aligned_cols=35 Identities=17% Similarity=0.166 Sum_probs=32.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593 31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH 65 (335)
Q Consensus 31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~ 65 (335)
...|.|||.|..|.++|..|++.|++|.++|+.+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 35799999999999999999999999999998764
No 478
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=94.52 E-value=0.068 Score=49.65 Aligned_cols=36 Identities=22% Similarity=0.289 Sum_probs=32.0
Q ss_pred CeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcH
Q 044593 32 LKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSP 67 (335)
Q Consensus 32 ~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~ 67 (335)
|+|.|.| .|-+|+.++..|.+.|++|.++||.....
T Consensus 1 ~~ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~~ 37 (314)
T COG0451 1 MRILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGL 37 (314)
T ss_pred CeEEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCccc
Confidence 4599999 69999999999999999999999987544
No 479
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=94.47 E-value=0.087 Score=52.39 Aligned_cols=35 Identities=23% Similarity=0.300 Sum_probs=31.8
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCC
Q 044593 30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSD 64 (335)
Q Consensus 30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~ 64 (335)
+.|||.|.| .|.+|+.++..|.+.|++|+++|+..
T Consensus 119 ~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ldr~~ 154 (436)
T PLN02166 119 KRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNFF 154 (436)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 458999999 69999999999999999999999864
No 480
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=94.46 E-value=0.057 Score=52.46 Aligned_cols=35 Identities=17% Similarity=0.191 Sum_probs=32.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCC
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSD 64 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~ 64 (335)
....|.|||.|..|.++|..|.+.|++|.++|+.+
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~ 39 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALADAGLSVALVEGRE 39 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 44689999999999999999999999999999864
No 481
>PRK13984 putative oxidoreductase; Provisional
Probab=94.44 E-value=0.18 Score=52.16 Aligned_cols=70 Identities=24% Similarity=0.243 Sum_probs=50.4
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCc---------------------HHHHHhCCCcee------c-
Q 044593 28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHS---------------------PAVRQQLNAPFF------A- 79 (335)
Q Consensus 28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~---------------------~~~a~~~g~~~~------~- 79 (335)
..+.++|.|||.|..|.+.|..|.+.|++|+++++++.. .+...+.|+... .
T Consensus 280 ~~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~ 359 (604)
T PRK13984 280 EKKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGKD 359 (604)
T ss_pred ccCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCCEeCCc
Confidence 346789999999999999999999999999999876521 123445565421 1
Q ss_pred -ChhhHhhcCCCEEEEecCc
Q 044593 80 -DLNDLCELHPDVVLLSTSI 98 (335)
Q Consensus 80 -~~~~~~~~~aDvVIlavp~ 98 (335)
+.+++. ..+|.||+|+..
T Consensus 360 ~~~~~~~-~~yD~vilAtGa 378 (604)
T PRK13984 360 IPLEELR-EKHDAVFLSTGF 378 (604)
T ss_pred CCHHHHH-hcCCEEEEEcCc
Confidence 223333 578999999864
No 482
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=94.42 E-value=0.17 Score=47.36 Aligned_cols=36 Identities=17% Similarity=0.289 Sum_probs=32.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCC
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSD 64 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~ 64 (335)
+...+|.|+|+|.+|.-+|+.|...|. +|+++|.+.
T Consensus 17 L~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ 53 (286)
T cd01491 17 LQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP 53 (286)
T ss_pred HhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence 456789999999999999999999997 799998764
No 483
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=94.42 E-value=0.059 Score=52.62 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=32.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH 65 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~ 65 (335)
...+|.|||.|..|.++|..|.+.|++|.++++.+.
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 52 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPA 52 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCc
Confidence 356899999999999999999999999999998753
No 484
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=94.39 E-value=0.059 Score=50.69 Aligned_cols=31 Identities=29% Similarity=0.424 Sum_probs=29.8
Q ss_pred eEEEEcccHHHHHHHHHHHHcCCeEEEEcCC
Q 044593 33 KIAVIGFGNFGQFLAKAFARHHHTLLVHSRS 63 (335)
Q Consensus 33 kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~ 63 (335)
.|.|||.|.+|.++|..|++.|++|++++++
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeec
Confidence 4899999999999999999999999999998
No 485
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=94.39 E-value=0.066 Score=51.58 Aligned_cols=37 Identities=22% Similarity=0.243 Sum_probs=33.5
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593 29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH 65 (335)
Q Consensus 29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~ 65 (335)
+..++|.|||.|.+|.+.|..|++.|++|+++|+.+-
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~ 38 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEA 38 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCcc
Confidence 3567999999999999999999999999999998763
No 486
>PLN02206 UDP-glucuronate decarboxylase
Probab=94.39 E-value=0.1 Score=51.93 Aligned_cols=35 Identities=20% Similarity=0.317 Sum_probs=31.7
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCC
Q 044593 30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSD 64 (335)
Q Consensus 30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~ 64 (335)
+.|||.|.| .|.+|+.++..|.++|++|+++|+..
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~~~ 153 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFF 153 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeCCC
Confidence 568999999 69999999999999999999998753
No 487
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.39 E-value=0.14 Score=51.39 Aligned_cols=66 Identities=15% Similarity=0.094 Sum_probs=45.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC-cHH---HHHhCCCcee-cChhhHhhcCCCEEEEec
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH-SPA---VRQQLNAPFF-ADLNDLCELHPDVVLLST 96 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~-~~~---~a~~~g~~~~-~~~~~~~~~~aDvVIlav 96 (335)
.++||+|+|+|.-|.+.++.|.+.|.+|+++|.++. ... ...+.+.... ....+.+ .++|+||.+-
T Consensus 7 ~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~d~vV~Sp 77 (468)
T PRK04690 7 EGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRL-AAFDVVVKSP 77 (468)
T ss_pred CCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHc-cCCCEEEECC
Confidence 367899999999999999999999999999996542 221 1222222211 1223334 6799999854
No 488
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=94.37 E-value=0.059 Score=51.78 Aligned_cols=33 Identities=27% Similarity=0.341 Sum_probs=30.8
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCC
Q 044593 32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSD 64 (335)
Q Consensus 32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~ 64 (335)
-.|.|||.|.+|.++|..|++.|++|+++|+..
T Consensus 4 ~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~ 36 (376)
T PRK11259 4 YDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFM 36 (376)
T ss_pred ccEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 469999999999999999999999999999875
No 489
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=94.36 E-value=0.23 Score=39.27 Aligned_cols=87 Identities=20% Similarity=0.201 Sum_probs=51.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHc-CCeEEEEcCCCCcHHHHH----hCCCc---ee-cCh----hhHhhcCCCEEEEec
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARH-HHTLLVHSRSDHSPAVRQ----QLNAP---FF-ADL----NDLCELHPDVVLLST 96 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~-G~~V~~~dr~~~~~~~a~----~~g~~---~~-~~~----~~~~~~~aDvVIlav 96 (335)
..++|.-+|+|. |......+... +.+|+++|.++...+.++ ..+.. .. .+. .... ...|+|++..
T Consensus 19 ~~~~vldlG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~D~v~~~~ 96 (124)
T TIGR02469 19 PGDVLWDIGAGS-GSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSL-PEPDRVFIGG 96 (124)
T ss_pred CCCEEEEeCCCC-CHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhc-CCCCEEEECC
Confidence 456899999988 44433333333 358999999987665443 23321 11 121 1222 4689999876
Q ss_pred CchhHHHHHhhccccccCCccEE
Q 044593 97 SILSTQSVLKSIPFQRLKRSTLF 119 (335)
Q Consensus 97 p~~~~~~vl~~l~~~~l~~~~iV 119 (335)
+.....++++.+. ..+++|..+
T Consensus 97 ~~~~~~~~l~~~~-~~Lk~gG~l 118 (124)
T TIGR02469 97 SGGLLQEILEAIW-RRLRPGGRI 118 (124)
T ss_pred cchhHHHHHHHHH-HHcCCCCEE
Confidence 6555666777664 456665543
No 490
>PRK06057 short chain dehydrogenase; Provisional
Probab=94.32 E-value=0.089 Score=47.67 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=34.9
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHHcCCeEEEEcCCCCcH
Q 044593 28 KSTSLKIAVIGF-GNFGQFLAKAFARHHHTLLVHSRSDHSP 67 (335)
Q Consensus 28 ~~~~~kI~IIG~-G~mG~siA~~L~~~G~~V~~~dr~~~~~ 67 (335)
.+++++|.|+|. |.||..+++.|.+.|++|++++|++...
T Consensus 4 ~~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~ 44 (255)
T PRK06057 4 RLAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAG 44 (255)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 356789999995 9999999999999999999999987543
No 491
>PRK10637 cysG siroheme synthase; Provisional
Probab=94.30 E-value=0.18 Score=50.45 Aligned_cols=76 Identities=11% Similarity=-0.052 Sum_probs=53.2
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC--cHHHHHhCCCceec---ChhhHhhcCCCEEEEecCchhHH
Q 044593 28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH--SPAVRQQLNAPFFA---DLNDLCELHPDVVLLSTSILSTQ 102 (335)
Q Consensus 28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~--~~~~a~~~g~~~~~---~~~~~~~~~aDvVIlavp~~~~~ 102 (335)
+.++++|.|||.|.+|..=+..|.+.|.+|+++.+.-. ..+.+.+..+.... ...+ + .++++||.||....+.
T Consensus 9 ~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~d-l-~~~~lv~~at~d~~~n 86 (457)
T PRK10637 9 QLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESL-L-DTCWLAIAATDDDAVN 86 (457)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHH-h-CCCEEEEECCCCHHHh
Confidence 35688999999999999999999999999999976532 22323322332211 2233 3 7899999999887655
Q ss_pred HHH
Q 044593 103 SVL 105 (335)
Q Consensus 103 ~vl 105 (335)
.-+
T Consensus 87 ~~i 89 (457)
T PRK10637 87 QRV 89 (457)
T ss_pred HHH
Confidence 443
No 492
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=94.25 E-value=0.098 Score=47.55 Aligned_cols=65 Identities=22% Similarity=0.224 Sum_probs=50.3
Q ss_pred CeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce----e---cChhhHhhcCCCEEEEecCc
Q 044593 32 LKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF----F---ADLNDLCELHPDVVLLSTSI 98 (335)
Q Consensus 32 ~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~----~---~~~~~~~~~~aDvVIlavp~ 98 (335)
|+|.|.| .|.+|+.++..|.+.|++|.+..|+++...... .++.. . .++.... .+.|.++++.+.
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~~~~~-~~v~~~~~d~~~~~~l~~a~-~G~~~~~~i~~~ 73 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAALA-GGVEVVLGDLRDPKSLVAGA-KGVDGVLLISGL 73 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCCEEEEEEeCHHHHHhhc-CCcEEEEeccCCHhHHHHHh-ccccEEEEEecc
Confidence 6899998 799999999999999999999999987765444 55532 1 2233344 789999998883
No 493
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=94.25 E-value=0.061 Score=52.39 Aligned_cols=33 Identities=33% Similarity=0.438 Sum_probs=31.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCC
Q 044593 31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRS 63 (335)
Q Consensus 31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~ 63 (335)
.+.|.|||.|..|.++|..|++.|++|.++++.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 468999999999999999999999999999997
No 494
>PLN02686 cinnamoyl-CoA reductase
Probab=94.20 E-value=0.1 Score=50.46 Aligned_cols=39 Identities=13% Similarity=0.254 Sum_probs=33.4
Q ss_pred CCCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCc
Q 044593 28 KSTSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHS 66 (335)
Q Consensus 28 ~~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~ 66 (335)
.+++++|.|.| .|.+|+.++..|.+.|++|.++.++...
T Consensus 50 ~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~ 89 (367)
T PLN02686 50 DAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQED 89 (367)
T ss_pred CCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 45678999999 5999999999999999999887776543
No 495
>PRK07045 putative monooxygenase; Reviewed
Probab=94.19 E-value=0.071 Score=51.73 Aligned_cols=36 Identities=22% Similarity=0.336 Sum_probs=32.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH 65 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~ 65 (335)
...+|.|||.|..|.+.|..|+++|++|+++++.+.
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~ 39 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAAR 39 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCc
Confidence 456899999999999999999999999999998764
No 496
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=94.17 E-value=0.088 Score=47.16 Aligned_cols=38 Identities=16% Similarity=0.139 Sum_probs=33.7
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCc
Q 044593 29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHS 66 (335)
Q Consensus 29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~ 66 (335)
++.++|.|.| .|.+|.++++.|.+.|++|++.+|+++.
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~ 42 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDD 42 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 4567899999 7999999999999999999999998653
No 497
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=94.17 E-value=0.14 Score=52.71 Aligned_cols=69 Identities=20% Similarity=0.285 Sum_probs=47.7
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHH--HHHhCCCceecCh---hhHhhcCCCEEEEecC
Q 044593 28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPA--VRQQLNAPFFADL---NDLCELHPDVVLLSTS 97 (335)
Q Consensus 28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~--~a~~~g~~~~~~~---~~~~~~~aDvVIlavp 97 (335)
.+..+||+|||.|..|..++.+.++.|++|+++|.+++... .+...-+....|. .+++ +++|+|.....
T Consensus 19 ~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a-~~~dvIt~e~e 92 (577)
T PLN02948 19 GVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFA-KRCDVLTVEIE 92 (577)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHH-HHCCEEEEecC
Confidence 35678999999999999999999999999999999875322 1111111112343 3344 67898876543
No 498
>PRK08219 short chain dehydrogenase; Provisional
Probab=94.17 E-value=0.1 Score=45.96 Aligned_cols=36 Identities=25% Similarity=0.349 Sum_probs=31.5
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcH
Q 044593 31 SLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSP 67 (335)
Q Consensus 31 ~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~ 67 (335)
+++|.|.| .|.+|..++..|.+. ++|++.+|++...
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~ 39 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-HTLLLGGRPAERL 39 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHH
Confidence 56899998 699999999999999 9999999986543
No 499
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=94.15 E-value=0.065 Score=52.56 Aligned_cols=34 Identities=29% Similarity=0.468 Sum_probs=31.1
Q ss_pred CeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCC
Q 044593 32 LKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDH 65 (335)
Q Consensus 32 ~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~ 65 (335)
|||+|||.|.-|.++|..|+++|+ +|+++++.+.
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~ 35 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPA 35 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCc
Confidence 689999999999999999999985 9999998764
No 500
>PRK06185 hypothetical protein; Provisional
Probab=94.15 E-value=0.069 Score=52.06 Aligned_cols=35 Identities=20% Similarity=0.275 Sum_probs=32.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCC
Q 044593 30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSD 64 (335)
Q Consensus 30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~ 64 (335)
....|.|||.|..|.++|..|++.|++|+++|+++
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~ 39 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHA 39 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 44679999999999999999999999999999875
Done!