BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044595
(558 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 70/126 (55%), Gaps = 3/126 (2%)
Query: 183 ARRLSLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSL 242
R L+L N++ ++S + +L L N+ Q +PN F + +LK L L ++L SL
Sbjct: 65 VRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL 124
Query: 243 PLGI-SKLVSLQHLDLSESDIEELP-GELKALVNLKCLDLEYTGNLITIPRQLISNLSRL 300
P G+ KL +L +L+L+ + ++ LP G L NL LDL Y L ++P + L++L
Sbjct: 125 PDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY-NQLQSLPEGVFDKLTQL 183
Query: 301 HVLRMF 306
LR++
Sbjct: 184 KDLRLY 189
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 3/101 (2%)
Query: 205 LLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGI-SKLVSLQHLDLSESDIE 263
L +L N+ Q +PN F + SL LNLS ++L SLP G+ KL L+ L L+ + ++
Sbjct: 54 LTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ 113
Query: 264 ELP-GELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVL 303
LP G L LK L L Y L ++P + L+ L +
Sbjct: 114 SLPDGVFDKLTQLKDLRL-YQNQLKSVPDGVFDRLTSLQYI 153
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 62/114 (54%), Gaps = 5/114 (4%)
Query: 197 SEIPT-CPHLLTFF-LNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGI-SKLVSLQ 253
+ +PT P T+ L N + +PN F + SL L L +KL SLP G+ +KL SL
Sbjct: 20 TSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLT 79
Query: 254 HLDLSESDIEELP-GELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMF 306
+L+LS + ++ LP G L LK L L T L ++P + L++L LR++
Sbjct: 80 YLNLSTNQLQSLPNGVFDKLTQLKELALN-TNQLQSLPDGVFDKLTQLKDLRLY 132
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 72/131 (54%), Gaps = 11/131 (8%)
Query: 183 ARRLSLMHNQITNLSEIPTCP-HLLT----FFLNKNRFQMIPNDFFQFMPSLKVLNLSYS 237
++L L N+ LS +P+ H LT +LN N+ Q +P F+ + +L+ L ++ +
Sbjct: 39 TKKLDLQSNK---LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95
Query: 238 KLTSLPLGI-SKLVSLQHLDLSESDIEELPGEL-KALVNLKCLDLEYTGNLITIPRQLIS 295
KL +LP+G+ +LV+L L L + ++ LP + +L L L L Y L ++P+ +
Sbjct: 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFD 154
Query: 296 NLSRLHVLRMF 306
L+ L LR++
Sbjct: 155 KLTSLKELRLY 165
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 66/126 (52%), Gaps = 3/126 (2%)
Query: 182 KARRLSLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTS 241
R L+L N++ ++S + +L L N+ Q +PN F + +LK L L ++L S
Sbjct: 64 NVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS 123
Query: 242 LPLGI-SKLVSLQHLDLSESDIEELP-GELKALVNLKCLDLEYTGNLITIPRQLISNLSR 299
LP G+ KL +L +L L + ++ LP G L NL LDL+ L ++P + L++
Sbjct: 124 LPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLD-NNQLQSLPEGVFDKLTQ 182
Query: 300 LHVLRM 305
L L +
Sbjct: 183 LKQLSL 188
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 75/163 (46%), Gaps = 27/163 (16%)
Query: 182 KARRLSLMHNQITNLS--EIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKL 239
+ R L L N+I L+ E + PHL LN+N + F + +L+ L L ++L
Sbjct: 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92
Query: 240 TSLPLGI-SKLVSLQHLDLSESDIEELPGEL-KALVNLKCL-----DLEYTG-------- 284
+PLG+ + L +L LD+SE+ I L + + L NLK L DL Y
Sbjct: 93 KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN 152
Query: 285 ----------NLITIPRQLISNLSRLHVLRMFGAGHNAFDEAS 317
NL +IP + +S+L L VLR+ NA + S
Sbjct: 153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYS 195
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 30/131 (22%)
Query: 210 LNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGI----------------------- 246
L+ N+ Q + F + L L L+ ++L SLPLG+
Sbjct: 66 LDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSG 125
Query: 247 --SKLVSLQHLDLSESDIEELP-GELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVL 303
+L L+ L L+ + ++ +P G L NL+ L L T L ++P L +L +
Sbjct: 126 VFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS-TNQLQSVPHGAFDRLGKLQTI 184
Query: 304 RMFGAGHNAFD 314
+FG N FD
Sbjct: 185 TLFG---NQFD 192
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 20/141 (14%)
Query: 199 IPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGI-SKLVSLQHLDL 257
IPT +L ++N+ + F + L LNL+ ++LT+LP+G+ KL L HL L
Sbjct: 38 IPTTTQVLHLYINQ--ITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLAL 95
Query: 258 SESDIEELP----GELKALVNL---------KCLDLEYTGNLITIPRQLISNLSRLHVLR 304
+ ++ +P LK+L ++ +C D+ Y N I +++ L V
Sbjct: 96 HINQLKSIPMGVFDNLKSLTHIYLFNNPWDCECSDILYLKNWIVQHASIVNPLGNGGVDN 155
Query: 305 MFGAGHN----AFDEASKDSS 321
+ +G N A EAS S
Sbjct: 156 VKCSGTNTPVRAVTEASTSPS 176
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 30/131 (22%)
Query: 210 LNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGI----------------------- 246
L+ N+ Q + F + L L L+ ++L SLPLG+
Sbjct: 66 LDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSG 125
Query: 247 --SKLVSLQHLDLSESDIEELP-GELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVL 303
+L L+ L L+ + ++ +P G L NL+ L L T L ++P L +L +
Sbjct: 126 VFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS-TNQLQSVPHGAFDRLGKLQTI 184
Query: 304 RMFGAGHNAFD 314
+FG N FD
Sbjct: 185 TLFG---NQFD 192
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 9/119 (7%)
Query: 170 GLVEAP-DVTGWEKARRLSLMHNQITNL--SEIPTCPHLLTFFLNKNRFQMIPNDFFQFM 226
GL+ P D++ +K L++ N I+ L S+I + L ++ NR Q + F+F
Sbjct: 11 GLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFN 68
Query: 227 PSLKVLNLSYSKLTSLPLGISKLVSLQHLDLSESDIEELP--GELKALVNLKCLDLEYT 283
L+ L+LS++KL + + V+L+HLDLS + + LP E + LK L L T
Sbjct: 69 QELEYLDLSHNKL--VKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT 125
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 28/40 (70%)
Query: 227 PSLKVLNLSYSKLTSLPLGISKLVSLQHLDLSESDIEELP 266
P +KVL+L +K+ S+P + KL +LQ L+++ + ++ +P
Sbjct: 421 PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVP 460
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 204 HLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHLDLSESDIE 263
L L N+ ++P+ F + LK L + +KLT LP GI +L L HL L ++ ++
Sbjct: 89 QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLK 148
Query: 264 ELP 266
+P
Sbjct: 149 SIP 151
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 185 RLSLMHNQITNLSE--IPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSL 242
+LSL NQI +L + L +L++N+ Q +PN F + LK L L ++L S+
Sbjct: 56 KLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSV 115
Query: 243 PLGI-SKLVSLQHL 255
P GI +L SLQ +
Sbjct: 116 PDGIFDRLTSLQKI 129
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 186 LSLMHNQITNLS-EIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPL 244
L L + QI N+S I L +LN N +P + + + +L+VL+LS+++LTSLP
Sbjct: 229 LDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEI-KNLSNLRVLDLSHNRLTSLPA 287
Query: 245 GISKLVSLQHLDLSESDIEELPGELKALVNLKCLDLE 281
+ L++ ++ + LP E L NL+ L +E
Sbjct: 288 ELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVE 324
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 231 VLNLSYSKLTSLPLGISKLVSLQHLDLSESDIEELPGELKALVNLKCLDLEYTGNLITIP 290
L+LS ++ ++ I K L L L+ + + ELP E+K L NL+ LDL + L ++P
Sbjct: 228 ALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSH-NRLTSLP 286
Query: 291 RQLIS 295
+L S
Sbjct: 287 AELGS 291
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 89/201 (44%), Gaps = 13/201 (6%)
Query: 154 CDIEKEKENFFVNAGVGLVEA--PDVTGWEKARRLSLMHNQITNLSEIPTCPHLLTFFLN 211
C++ K + VN + A PD+ + L L N + S P+ LN
Sbjct: 4 CEVSKVASHLEVNCDKRQLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 212 KNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHLDLSESDIEELP-GELK 270
+R ++ +P L L+LS+++L SLPL L +L LD+S + + LP G L+
Sbjct: 62 LDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 271 ALVNLKCLDLEYTGN-LITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFI 329
L L+ L L+ GN L T+P L++ +L L + +N E + L G E +
Sbjct: 122 GLGELQELYLK--GNELKTLPPGLLTPTPKLEKLSL---ANNQLTELP--AGLLNGLENL 174
Query: 330 VEELLGLKSLEVISFTLRSSH 350
LL SL I SH
Sbjct: 175 DTLLLQENSLYTIPKGFFGSH 195
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 89/201 (44%), Gaps = 13/201 (6%)
Query: 154 CDIEKEKENFFVNAGVGLVEA--PDVTGWEKARRLSLMHNQITNLSEIPTCPHLLTFFLN 211
C++ K + VN + A PD+ + L L N + S P+ LN
Sbjct: 4 CEVSKVASHLEVNCDKRQLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 212 KNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHLDLSESDIEELP-GELK 270
+R ++ +P L L+LS+++L SLPL L +L LD+S + + LP G L+
Sbjct: 62 LDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 271 ALVNLKCLDLEYTGN-LITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFI 329
L L+ L L+ GN L T+P L++ +L L + +N E + L G E +
Sbjct: 122 GLGELQELYLK--GNELKTLPPGLLTPTPKLEKLSL---ANNQLTELP--AGLLNGLENL 174
Query: 330 VEELLGLKSLEVISFTLRSSH 350
LL SL I SH
Sbjct: 175 DTLLLQENSLYTIPKGFFGSH 195
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 88/201 (43%), Gaps = 13/201 (6%)
Query: 154 CDIEKEKENFFVNAGVGLVEA--PDVTGWEKARRLSLMHNQITNLSEIPTCPHLLTFFLN 211
C++ K + VN + A PD+ + L L N + S P+ LN
Sbjct: 4 CEVSKVASHLEVNCDKRQLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 212 KNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHLDLSESDIEELP-GELK 270
+R ++ +P L L+LS+++L SLPL L +L LD+S + + LP G L+
Sbjct: 62 LDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 271 ALVNLKCLDLEYTGN-LITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFI 329
L L+ +L GN L T+P L++ +L L + +N E + L G E +
Sbjct: 122 GLGELQ--ELYLKGNELKTLPPGLLTPTPKLEKLSL---ANNQLTELP--AGLLNGLENL 174
Query: 330 VEELLGLKSLEVISFTLRSSH 350
LL SL I SH
Sbjct: 175 DTLLLQENSLYTIPKGFFGSH 195
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 88/201 (43%), Gaps = 13/201 (6%)
Query: 154 CDIEKEKENFFVNAGVGLVEA--PDVTGWEKARRLSLMHNQITNLSEIPTCPHLLTFFLN 211
C++ K + VN + A PD+ + L L N + S P+ LN
Sbjct: 4 CEVSKVASHLEVNCDKRQLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 212 KNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHLDLSESDIEELP-GELK 270
+R ++ +P L L+LS+++L SLPL L +L LD+S + + LP G L+
Sbjct: 62 LDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 271 ALVNLKCLDLEYTGN-LITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFI 329
L L+ +L GN L T+P L++ +L L + +N E + L G E +
Sbjct: 122 GLGELQ--ELYLKGNELKTLPPGLLTPTPKLEKLSL---ANNQLTELP--AGLLNGLENL 174
Query: 330 VEELLGLKSLEVISFTLRSSH 350
LL SL I SH
Sbjct: 175 DTLLLQENSLYTIPKGFFGSH 195
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 181 EKARRLSLMHNQIT--NLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSK 238
E L L HN+I L ++ L L N+ +MI N F+P+L+ L+L +K
Sbjct: 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK 252
Query: 239 LTSLPLGISKLVSLQHLDLSESDIEEL 265
L+ +P G+ L LQ + L ++I ++
Sbjct: 253 LSRVPAGLPDLKLLQVVYLHTNNITKV 279
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 89/201 (44%), Gaps = 13/201 (6%)
Query: 154 CDIEKEKENFFVNAGVGLVEA--PDVTGWEKARRLSLMHNQITNLSEIPTCPHLLTFFLN 211
C++ K + VN + A PD+ + L L N + S P+ LN
Sbjct: 4 CEVSKVASHLEVNCDKRDLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 212 KNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHLDLSESDIEELP-GELK 270
+R ++ +P L L+LS+++L SLPL L +L LD+S + + LP G L+
Sbjct: 62 LDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 271 ALVNLKCLDLEYTGN-LITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFI 329
L L+ L L+ GN L T+P L++ +L L + +N E + L G E +
Sbjct: 122 GLGELQELYLK--GNELKTLPPGLLTPTPKLEKLSL---ANNDLTELP--AGLLNGLENL 174
Query: 330 VEELLGLKSLEVISFTLRSSH 350
LL SL I SH
Sbjct: 175 DTLLLQENSLYTIPKGFFGSH 195
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 89/201 (44%), Gaps = 13/201 (6%)
Query: 154 CDIEKEKENFFVNAGVGLVEA--PDVTGWEKARRLSLMHNQITNLSEIPTCPHLLTFFLN 211
C++ K + VN + A PD+ + L L N + S P+ LN
Sbjct: 4 CEVSKVASHLEVNCDKRDLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 212 KNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHLDLSESDIEELP-GELK 270
+R ++ +P L L+LS+++L SLPL L +L LD+S + + LP G L+
Sbjct: 62 LDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 271 ALVNLKCLDLEYTGN-LITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFI 329
L L+ L L+ GN L T+P L++ +L L + +N E + L G E +
Sbjct: 122 GLGELQELYLK--GNELKTLPPGLLTPTPKLEKLSL---ANNNLTELP--AGLLNGLENL 174
Query: 330 VEELLGLKSLEVISFTLRSSH 350
LL SL I SH
Sbjct: 175 DTLLLQENSLYTIPKGFFGSH 195
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 89/201 (44%), Gaps = 13/201 (6%)
Query: 154 CDIEKEKENFFVNAGVGLVEA--PDVTGWEKARRLSLMHNQITNLSEIPTCPHLLTFFLN 211
C++ K + VN + A PD+ + L L N + S P+ LN
Sbjct: 4 CEVSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 212 KNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHLDLSESDIEELP-GELK 270
+R ++ +P L L+LS+++L SLPL L +L LD+S + + LP G L+
Sbjct: 62 LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 271 ALVNLKCLDLEYTGN-LITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFI 329
L L+ L L+ GN L T+P L++ +L L + +N E + L G E +
Sbjct: 122 GLGELQELYLK--GNELKTLPPGLLTPTPKLEKLSL---ANNNLTELP--AGLLNGLENL 174
Query: 330 VEELLGLKSLEVISFTLRSSH 350
LL SL I SH
Sbjct: 175 DTLLLQENSLYTIPKGFFGSH 195
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 89/201 (44%), Gaps = 13/201 (6%)
Query: 154 CDIEKEKENFFVNAGVGLVEA--PDVTGWEKARRLSLMHNQITNLSEIPTCPHLLTFFLN 211
C++ K + VN + A PD+ + L L N + S P+ LN
Sbjct: 4 CEVSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 212 KNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHLDLSESDIEELP-GELK 270
+R ++ +P L L+LS+++L SLPL L +L LD+S + + LP G L+
Sbjct: 62 LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 271 ALVNLKCLDLEYTGN-LITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFI 329
L L+ L L+ GN L T+P L++ +L L + +N E + L G E +
Sbjct: 122 GLGELQELYLK--GNELKTLPPGLLTPTPKLEKLSL---ANNNLTELP--AGLLNGLENL 174
Query: 330 VEELLGLKSLEVISFTLRSSH 350
LL SL I SH
Sbjct: 175 DTLLLQENSLYTIPKGFFGSH 195
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 89/201 (44%), Gaps = 13/201 (6%)
Query: 154 CDIEKEKENFFVNAGVGLVEA--PDVTGWEKARRLSLMHNQITNLSEIPTCPHLLTFFLN 211
C++ K + VN + A PD+ + L L N + S P+ LN
Sbjct: 4 CEVSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 212 KNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHLDLSESDIEELP-GELK 270
+R ++ +P L L+LS+++L SLPL L +L LD+S + + LP G L+
Sbjct: 62 LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 271 ALVNLKCLDLEYTGN-LITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFI 329
L L+ L L+ GN L T+P L++ +L L + +N E + L G E +
Sbjct: 122 GLGELQELYLK--GNELKTLPPGLLTPTPKLEKLSL---ANNNLTELP--AGLLNGLENL 174
Query: 330 VEELLGLKSLEVISFTLRSSH 350
LL SL I SH
Sbjct: 175 DTLLLQENSLYTIPKGFFGSH 195
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 88/201 (43%), Gaps = 13/201 (6%)
Query: 154 CDIEKEKENFFVNAGVGLVEA--PDVTGWEKARRLSLMHNQITNLSEIPTCPHLLTFFLN 211
C++ K + VN + A PD+ + L L N + S P+ LN
Sbjct: 5 CEVSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 62
Query: 212 KNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHLDLSESDIEELP-GELK 270
+R ++ +P L L+LS+++L SLPL L +L LD+S + + LP G L+
Sbjct: 63 LDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 122
Query: 271 ALVNLKCLDLEYTGN-LITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFI 329
L L+ +L GN L T+P L++ +L L + +N E + L G E +
Sbjct: 123 GLGELQ--ELYLKGNELKTLPPGLLTPTPKLEKLSL---ANNNLTELP--AGLLNGLENL 175
Query: 330 VEELLGLKSLEVISFTLRSSH 350
LL SL I SH
Sbjct: 176 DTLLLQENSLYTIPKGFFGSH 196
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 37.7 bits (86), Expect = 0.017, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 184 RRLSLMHNQITNLSEIPTCPHLLTF---FLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLT 240
+RL L +NQIT L E HL+ + N N+ IP F + L L+L+ + L
Sbjct: 36 QRLWLNNNQITKL-EPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK 94
Query: 241 SLPLG-ISKLVSLQHLDL 257
S+P G L SL H+ L
Sbjct: 95 SIPRGAFDNLKSLTHIYL 112
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 204 HLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLP-LGISKLVSLQHLDLSE--- 259
+L T L NR IPN F ++ LK L L + + S+P +++ SL+ LDL E
Sbjct: 113 NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKR 172
Query: 260 -SDIEELPGELKALVNLKCLDLEYTGNLITIP 290
S I E G + L NL+ L+L NL IP
Sbjct: 173 LSYISE--GAFEGLSNLRYLNLAMC-NLREIP 201
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 195 NLSEIPTCPHLLTFFLN-------KNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGI- 246
N+ E+P+ HL N N+ + +P F MP LK LNL+ ++L S+P GI
Sbjct: 157 NIEEMPS--HLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIF 214
Query: 247 SKLVSLQHL 255
+L SLQ +
Sbjct: 215 DRLTSLQKI 223
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 6/90 (6%)
Query: 228 SLKVLNLSYSKLTSLPLGISKLVSLQHLDLSESDIEELP--GELKALVNLKCLDLEYTGN 285
SLK L+LS++ + ++ L L+HLD S+++++ +L NL LD+ +T
Sbjct: 398 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 457
Query: 286 LITIPRQLISNLSRLHVLRMFGAGHNAFDE 315
+ + + LS L VL+M G N+F E
Sbjct: 458 RVAF-NGIFNGLSSLEVLKMAG---NSFQE 483
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 67/135 (49%), Gaps = 8/135 (5%)
Query: 174 APDVTGWEKARRLSLMHNQITNLSEIP---TCPHLLTFFLNKNRFQMIPNDFFQFMPSLK 230
+ + G E+ L H+ + +SE + +L+ ++ ++ N F + SL+
Sbjct: 413 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 472
Query: 231 VLNLSYSKLTS--LPLGISKLVSLQHLDLSESDIEEL-PGELKALVNLKCLDLEYTG--N 285
VL ++ + LP ++L +L LDLS+ +E+L P +L +L+ L++ + +
Sbjct: 473 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 532
Query: 286 LITIPRQLISNLSRL 300
L T P + +++L L
Sbjct: 533 LDTFPYKCLNSLQVL 547
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 171 LVEAPDVTGWEKARRLSLM---HNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMP 227
L E P +K +L L+ HN++ +L T L L+ N+ + IP DF F
Sbjct: 560 LEEFPASASLQKXVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTD 619
Query: 228 SLKVLNLSYSKLTSLP 243
++ L S++KL +P
Sbjct: 620 QVEGLGFSHNKLKYIP 635
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 6/90 (6%)
Query: 228 SLKVLNLSYSKLTSLPLGISKLVSLQHLDLSESDIEELP--GELKALVNLKCLDLEYTGN 285
SLK L+LS++ + ++ L L+HLD S+++++ +L NL LD+ +T
Sbjct: 374 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433
Query: 286 LITIPRQLISNLSRLHVLRMFGAGHNAFDE 315
+ + + LS L VL+M G N+F E
Sbjct: 434 RVAF-NGIFNGLSSLEVLKMAG---NSFQE 459
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 65/134 (48%), Gaps = 7/134 (5%)
Query: 174 APDVTGWEKARRLSLMHNQITNLSEIP---TCPHLLTFFLNKNRFQMIPNDFFQFMPSLK 230
+ + G E+ L H+ + +SE + +L+ ++ ++ N F + SL+
Sbjct: 389 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448
Query: 231 VLNLSYSKLTS--LPLGISKLVSLQHLDLSESDIEEL-PGELKALVNLKCLDLEYTGNLI 287
VL ++ + LP ++L +L LDLS+ +E+L P +L +L+ L++ + L
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA-SNQLK 507
Query: 288 TIPRQLISNLSRLH 301
++P + L+ L
Sbjct: 508 SVPDGIFDRLTSLQ 521
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 6/90 (6%)
Query: 228 SLKVLNLSYSKLTSLPLGISKLVSLQHLDLSESDIEELP--GELKALVNLKCLDLEYTGN 285
SLK L+LS++ + ++ L L+HLD S+++++ +L NL LD+ +T
Sbjct: 79 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 138
Query: 286 LITIPRQLISNLSRLHVLRMFGAGHNAFDE 315
+ + + LS L VL+M G N+F E
Sbjct: 139 RVAF-NGIFNGLSSLEVLKMAG---NSFQE 164
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 67/135 (49%), Gaps = 8/135 (5%)
Query: 174 APDVTGWEKARRLSLMHNQITNLSEIP---TCPHLLTFFLNKNRFQMIPNDFFQFMPSLK 230
+ + G E+ L H+ + +SE + +L+ ++ ++ N F + SL+
Sbjct: 94 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 153
Query: 231 VLNLSYSKLTS--LPLGISKLVSLQHLDLSESDIEEL-PGELKALVNLKCLDLEYTG--N 285
VL ++ + LP ++L +L LDLS+ +E+L P +L +L+ L++ + +
Sbjct: 154 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 213
Query: 286 LITIPRQLISNLSRL 300
L T P + +++L L
Sbjct: 214 LDTFPYKCLNSLQVL 228
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 6/90 (6%)
Query: 228 SLKVLNLSYSKLTSLPLGISKLVSLQHLDLSESDIEELP--GELKALVNLKCLDLEYTGN 285
SLK L+LS++ + ++ L L+HLD S+++++ +L NL LD+ +T
Sbjct: 374 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433
Query: 286 LITIPRQLISNLSRLHVLRMFGAGHNAFDE 315
+ + + LS L VL+M G N+F E
Sbjct: 434 RVAF-NGIFNGLSSLEVLKMAG---NSFQE 459
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 67/135 (49%), Gaps = 8/135 (5%)
Query: 174 APDVTGWEKARRLSLMHNQITNLSEIP---TCPHLLTFFLNKNRFQMIPNDFFQFMPSLK 230
+ + G E+ L H+ + +SE + +L+ ++ ++ N F + SL+
Sbjct: 389 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448
Query: 231 VLNLSYSKLTS--LPLGISKLVSLQHLDLSESDIEEL-PGELKALVNLKCLDLEYTG--N 285
VL ++ + LP ++L +L LDLS+ +E+L P +L +L+ L++ + +
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 508
Query: 286 LITIPRQLISNLSRL 300
L T P + +++L L
Sbjct: 509 LDTFPYKCLNSLQVL 523
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 35.8 bits (81), Expect = 0.063, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 199 IPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGI-SKLVSLQHLDL 257
IPT +L +L NR + F + L L+L ++LT LP G+ KL L L L
Sbjct: 28 IPTTTQVL--YLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85
Query: 258 SESDIEELPGELKALVNLKCL 278
+++ ++ +P A NL+ L
Sbjct: 86 NDNQLKSIP--RGAFDNLRSL 104
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 35.8 bits (81), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 13/117 (11%)
Query: 179 GWEKARRLSLMHNQITNL--SEIPTCP--------HLLTFFLNKNRFQMIPNDFFQFMPS 228
G EK L L HN + L P P HL L N F IP + F+ +
Sbjct: 512 GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFE 571
Query: 229 LKVLNLSYSKLTSLPLGI-SKLVSLQHLDLSESDIEELPGEL--KALVNLKCLDLEY 282
LK+++L + L +LP + + VSL+ L+L ++ I + ++ A NL LD+ +
Sbjct: 572 LKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRF 628
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 13/117 (11%)
Query: 179 GWEKARRLSLMHNQITNL--SEIPTCP--------HLLTFFLNKNRFQMIPNDFFQFMPS 228
G EK L L HN + L P P HL L N F IP + F+ +
Sbjct: 507 GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFE 566
Query: 229 LKVLNLSYSKLTSLPLGI-SKLVSLQHLDLSESDIEELPGEL--KALVNLKCLDLEY 282
LK+++L + L +LP + + VSL+ L+L ++ I + ++ A NL LD+ +
Sbjct: 567 LKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRF 623
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 35.4 bits (80), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 13/118 (11%)
Query: 179 GWEKARRLSLMHNQITNL--SEIPTCP--------HLLTFFLNKNRFQMIPNDFFQFMPS 228
G EK L L HN + L P P HL L N F IP + F+ +
Sbjct: 502 GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFE 561
Query: 229 LKVLNLSYSKLTSLPLGI-SKLVSLQHLDLSESDIEELPGEL--KALVNLKCLDLEYT 283
LK+++L + L +LP + + VSL+ L+L ++ I + ++ A NL LD+ +
Sbjct: 562 LKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 619
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 35.0 bits (79), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 182 KARRLSLMHNQITNL--SEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKL 239
+ + LSL N I+ L +I L L+ NR + + F F L+ L++S+++L
Sbjct: 53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL 112
Query: 240 TSLPLGISKLVSLQHLDLSESDIEELP 266
++ + SL+HLDLS +D + LP
Sbjct: 113 QNI--SCCPMASLRHLDLSFNDFDVLP 137
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 227 PSLKVLNLSYSKLTSLPLGISKLVSLQHLDLSESDIEELP-GELKALVNLK 276
P +KVL+L +++ S+P ++ L +LQ L+++ + ++ +P G L +L+
Sbjct: 450 PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQ 500
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 208 FFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLP-LGISKLVSLQHLDLSESDIEEL- 265
+L N Q +P+D F+ + +L L L ++++S+P L SL L L ++ + +
Sbjct: 133 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 192
Query: 266 PGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRM 305
P + L L L L + NL +P + ++ L L LR+
Sbjct: 193 PHAFRDLGRLMTLYL-FANNLSALPTEALAPLRALQYLRL 231
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 80/201 (39%), Gaps = 18/201 (8%)
Query: 208 FFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSL-PLGISKLVSLQHLDLSE-SDIEEL 265
FL+ NR +P F+ +L +L L + L + + L L+ LDLS+ + + +
Sbjct: 36 IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 95
Query: 266 -PGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFG 324
P L L L L+ G L + L L+ L L + NA +A D +
Sbjct: 96 DPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYL---QDNAL-QALPDDTFRD 150
Query: 325 GGEFIVEELLGLKSLEVISFTLRSSHGLQMIL---------SSDQLRSCTRALSFQCF-N 374
G L G + V R H L +L R R ++ F N
Sbjct: 151 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 210
Query: 375 DSTSLEVSALADLKQLKMLRI 395
+ ++L ALA L+ L+ LR+
Sbjct: 211 NLSALPTEALAPLRALQYLRL 231
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 208 FFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLP-LGISKLVSLQHLDLSESDIEEL- 265
+L N Q +P+D F+ + +L L L ++++S+P L SL L L ++ + +
Sbjct: 134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 193
Query: 266 PGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRM 305
P + L L L L + NL +P + ++ L L LR+
Sbjct: 194 PHAFRDLGRLMTLYL-FANNLSALPTEALAPLRALQYLRL 232
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 80/201 (39%), Gaps = 18/201 (8%)
Query: 208 FFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSL-PLGISKLVSLQHLDLSE-SDIEEL 265
FL+ NR +P F+ +L +L L + L + + L L+ LDLS+ + + +
Sbjct: 37 IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 96
Query: 266 -PGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFG 324
P L L L L+ G L + L L+ L L + NA +A D +
Sbjct: 97 DPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYL---QDNAL-QALPDDTFRD 151
Query: 325 GGEFIVEELLGLKSLEVISFTLRSSHGLQMIL---------SSDQLRSCTRALSFQCF-N 374
G L G + V R H L +L R R ++ F N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211
Query: 375 DSTSLEVSALADLKQLKMLRI 395
+ ++L ALA L+ L+ LR+
Sbjct: 212 NLSALPTEALAPLRALQYLRL 232
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 62/140 (44%), Gaps = 38/140 (27%)
Query: 196 LSEIPTCPHLLTFF-LNKNRF----QMIPNDFF------------QFMPSLKVLNLSYSK 238
L+++P P LTF +++N F ++ PN ++ PSL+ LN+S +K
Sbjct: 269 LTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK 328
Query: 239 LTSLPLGISKL----VSLQHLDLSESDIEELPGELKAL------------VNLKCLDLEY 282
L LP +L S HL +++ ELP LK L + DL
Sbjct: 329 LIELPALPPRLERLIASFNHL----AEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRM 384
Query: 283 TGNLITIPRQLISNLSRLHV 302
+L +P +L NL +LHV
Sbjct: 385 NSHLAEVP-ELPQNLKQLHV 403
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 10/83 (12%)
Query: 190 HNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKL 249
+N + L E+ P L T + + N + +P+ PSL+ LN+ + LT LP
Sbjct: 224 NNILEELPELQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTDLP---ELP 276
Query: 250 VSLQHLDLSE---SDIEELPGEL 269
SL LD+SE S + ELP L
Sbjct: 277 QSLTFLDVSENIFSGLSELPPNL 299
>pdb|2IFG|A Chain A, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
pdb|2IFG|B Chain B, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
Length = 347
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 212 KNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHLDLS 258
K+ + + D F F P L LNLS++ L SL + +SLQ L LS
Sbjct: 65 KSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLS 111
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 63/155 (40%), Gaps = 32/155 (20%)
Query: 182 KARRLSLMHN--QITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKL 239
R L+L N Q+ HL L+KN + I F +PSL L L ++L
Sbjct: 36 NTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRL 95
Query: 240 TSLPL-GISKLVSLQHLDLSESDIEELP---------------GELK-----------AL 272
T++P L L+ L L + IE +P GELK L
Sbjct: 96 TTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGL 155
Query: 273 VNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFG 307
VNL+ L+L NL IP ++ L RL L + G
Sbjct: 156 VNLRYLNLGMC-NLKDIPN--LTALVRLEELELSG 187
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Query: 186 LSLMHNQITNL-SEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSL-P 243
L L NQ T + E+ HL L+ NR + N F M L L LSY++L + P
Sbjct: 36 LYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPP 95
Query: 244 LGISKLVSLQHLDLSESDIEELP----GELKALVNL 275
L SL+ L L +DI +P +L AL +L
Sbjct: 96 RTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHL 131
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 13/118 (11%)
Query: 204 HLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSL---PLGISKLVSLQHLDLSES 260
++ +L+ N++ + F +PSL+ L L L ++ P L +L LDLS +
Sbjct: 431 NIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNN 490
Query: 261 DIEELPGE-LKALVNLKCLDLEYTGNLITI--------PRQLISNLSRLHVLRMFGAG 309
+I + + L+ L NL+ LD ++ NL + P + LS LH+L + G
Sbjct: 491 NIANINEDLLEGLENLEILDFQH-NNLARLWKRANPGGPVNFLKGLSHLHILNLESNG 547
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 68/180 (37%), Gaps = 40/180 (22%)
Query: 205 LLTFFLNKNRFQMIPNDFFQFMPSLKVLN-------------------------LSYSKL 239
LLT L KN I N F ++ L++L+ LSY+K
Sbjct: 383 LLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKY 442
Query: 240 TSLPLGISKLV-SLQHLDLSE---SDIEELPGELKALVNLKCLDLEYTGNLITIPRQLIS 295
L LV SLQ L L +++ P + L NL LDL N+ I L+
Sbjct: 443 LQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLS-NNNIANINEDLLE 501
Query: 296 NLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGLKSLEVISFTLRSSHGLQMI 355
L L +L HN K ++ G F L GL L +++ S+GL I
Sbjct: 502 GLENLEILDF---QHNNLARLWKRANPGGPVNF----LKGLSHLHILNL---ESNGLDEI 551
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 63/155 (40%), Gaps = 32/155 (20%)
Query: 182 KARRLSLMHN--QITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKL 239
R L+L N Q+ HL L+KN + I F +PSL L L ++L
Sbjct: 36 NTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRL 95
Query: 240 TSLPL-GISKLVSLQHLDLSESDIEELP---------------GELK-----------AL 272
T++P L L+ L L + IE +P GELK L
Sbjct: 96 TTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGL 155
Query: 273 VNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFG 307
VNL+ L+L NL IP ++ L RL L + G
Sbjct: 156 VNLRYLNLGMC-NLKDIPN--LTALVRLEELELSG 187
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 16/118 (13%)
Query: 203 PHLLTFFLNKNRFQM-----IPNDFFQFMPSLKVLNLSYSKLTSLPLGI-SKLVSLQHLD 256
P L FL +N Q+ + D F+ + L+VL L+++ L SLP G+ S L +L+ L
Sbjct: 451 PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLS 510
Query: 257 LSESDIEELP-GELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAF 313
L+ + + L +L A NL+ LD+ L P +S L + HN F
Sbjct: 511 LNSNRLTVLSHNDLPA--NLEILDISRNQLLAPNPDVFVS-------LSVLDITHNKF 559
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 92/231 (39%), Gaps = 61/231 (26%)
Query: 165 VNAGVGL--VEAPDVTGW-----EKARRLSLMHNQITNLSE--IPTCPHLLTFFLNKNRF 215
+ AG G ++ PD + R L L H + +L+ T L L N+
Sbjct: 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKI 302
Query: 216 QMIPNDFFQFMPSLKVLNLSYSKLTSL-PLGISKLVSLQHLDLSESDIEELPGE-LKALV 273
I ++ F + +L+VLNLSY+ L L L + ++DL ++ I + + K L
Sbjct: 303 NKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE 362
Query: 274 NLKCLDLE-----------------YTGN-LITIPR-QLISNLSRLHVLRMFGAGHNAFD 314
L+ LDL +GN L+T+P+ L +NL L R
Sbjct: 363 KLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENR---------- 412
Query: 315 EASKDSSLFGGGEFIVEELLGLKSLEVISFTLRSSHGLQMILSSDQLRSCT 365
L++L+++ F LR H +IL+ ++ SC+
Sbjct: 413 ---------------------LENLDILYFLLRVPHLQILILNQNRFSSCS 442
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 7/94 (7%)
Query: 187 SLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGI 246
SL HN I++++ + P L + +L N+ I + L L+L ++++ + + +
Sbjct: 115 SLEHNGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDI-VPL 171
Query: 247 SKLVSLQHLDLSESDIEELPGELKALVNLKCLDL 280
+ L LQ+L LS++ I +L+AL LK LD+
Sbjct: 172 AGLTKLQNLYLSKNHIS----DLRALAGLKNLDV 201
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 205 LLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLP-LGISKLVSLQHLDLSE-SDI 262
L T L N +IP+ F+++ L+ L L + + S+P +++ SL LDL E +
Sbjct: 125 LNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKL 184
Query: 263 EELP-GELKALVNLKCLDL 280
E + G + L NLK L+L
Sbjct: 185 EYISEGAFEGLFNLKYLNL 203
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
(S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate
pdb|3PYB|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|B Chain B, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|C Chain C, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
Length = 727
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 341 VISFTLRSSHGLQMILSSDQLRSCTRALSFQCFNDSTSLEVSALADLKQLKMLRIARSEI 400
++F L HG Q +S+D ++ + F CF ++ V+ + +L + L R EI
Sbjct: 299 AMAFRLLRQHGYQ--VSADVFKNFEKEGEFFCFVGQSNQAVTGMFNLYRASQLAFPREEI 356
Query: 401 LEELK 405
L+ K
Sbjct: 357 LKNAK 361
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Query: 229 LKVLNLSYSKLTSLPLGISKLVSLQHLDLSESDIEELPGELKALVNLKCLD-----LEYT 283
++VL+L++ LT L + +L+ + HLDLS + + LP L AL L+ L LE
Sbjct: 443 VRVLHLAHKDLTVL-CHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 501
Query: 284 GNLITIPR 291
+ +PR
Sbjct: 502 DGVANLPR 509
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 229 LKVLNLSYSKLTSLPLGISKLVSLQHLDLSESDIEELPGELKALVNLKCLDLEYTGNLIT 288
++VL+L++ LT L + +L+ + HLDLS + + LP AL L+CL++ +
Sbjct: 443 VRVLHLAHKDLTVL-CHLEQLLLVTHLDLSHNRLRALP---PALAALRCLEVLQASDNAL 498
Query: 289 IPRQLISNLSRLHVL 303
++NL RL L
Sbjct: 499 ENVDGVANLPRLQEL 513
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 6/124 (4%)
Query: 210 LNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPL-GISKLVSLQHLDLSESDIEELPGE 268
L+ NR I N Q +L+ L L+ + + ++ S L SL+HLDLS + + L
Sbjct: 59 LSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSS 118
Query: 269 -LKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGE 327
K L +L L+L L S+L++L +LR+ + F + + F G
Sbjct: 119 WFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV--GNMDTFTKIQRKD--FAGLT 174
Query: 328 FIVE 331
F+ E
Sbjct: 175 FLEE 178
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 80/201 (39%), Gaps = 18/201 (8%)
Query: 208 FFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSL-PLGISKLVSLQHLDLSESDIEEL- 265
FL+ NR +P FQ +L +L L + L + + L L+ LDLS++ +
Sbjct: 36 IFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVV 95
Query: 266 -PGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVL-----RMFGAGHNAFDEASKD 319
P + L +L L L+ G L + L L+ L L + N F +
Sbjct: 96 DPTTFRGLGHLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNL 154
Query: 320 SSLFGGGEFIV----EELLGLKSLEVISFTLRSSHGLQMILSSDQLRSCTRALSFQCF-N 374
+ LF G I GL SL+ L +H ++ R R ++ F N
Sbjct: 155 THLFLHGNRIPSVPEHAFRGLHSLD--RLLLHQNHVARV--HPHAFRDLGRLMTLYLFAN 210
Query: 375 DSTSLEVSALADLKQLKMLRI 395
+ + L L L+ L+ LR+
Sbjct: 211 NLSMLPAEVLVPLRSLQYLRL 231
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 65/134 (48%), Gaps = 23/134 (17%)
Query: 184 RRLSLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPS-LKVLNLSYSKLTSL 242
+ LS+ NQ+ +L +P+ L + N+ +P +PS L+ L++S ++L SL
Sbjct: 144 QELSVSDNQLASLPALPS--ELCKLWAYNNQLTSLP-----MLPSGLQELSVSDNQLASL 196
Query: 243 PLGISKLVSLQHLDLSESDIEELPGELKALVNLKCLDLEYTGN-LITIP------RQLIS 295
P S+L L + + + LP LK L+ +GN L ++P ++L+
Sbjct: 197 PTLPSELYKLWAYNNRLTSLPALPSGLKELI--------VSGNRLTSLPVLPSELKELMV 248
Query: 296 NLSRLHVLRMFGAG 309
+ +RL L M +G
Sbjct: 249 SGNRLTSLPMLPSG 262
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 11/93 (11%)
Query: 190 HNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPS-LKVLNLSYSKLTSLPLGISK 248
+N++T+L +P+ L ++ NR +P +PS LK L +S ++LTSLP+ S
Sbjct: 210 NNRLTSLPALPSG--LKELIVSGNRLTSLP-----VLPSELKELMVSGNRLTSLPMLPSG 262
Query: 249 LVSLQHLDLSESDIEELPGELKALVNLKCLDLE 281
L+S L + + + LP L L + ++LE
Sbjct: 263 LLS---LSVYRNQLTRLPESLIHLSSETTVNLE 292
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 6/124 (4%)
Query: 210 LNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPL-GISKLVSLQHLDLSESDIEELPGE 268
L+ NR I N Q +L+ L L+ + + ++ S L SL+HLDLS + + L
Sbjct: 33 LSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSS 92
Query: 269 -LKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGE 327
K L +L L+L L S+L++L +LR+ + F + + F G
Sbjct: 93 WFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV--GNMDTFTKIQRKD--FAGLT 148
Query: 328 FIVE 331
F+ E
Sbjct: 149 FLEE 152
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 210 LNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLG---ISKLVSLQHLDLSESDIEELP 266
LN N F + PSL+ L + + L LG + KL +LQ LDLS SDIE
Sbjct: 307 LNANSFDQLCQINAASFPSLRDLYIK-GNMRKLDLGTRCLEKLENLQKLDLSHSDIEASD 365
Query: 267 G---ELKALVNLKCLDLEYT 283
+LK L +L+ L+L Y
Sbjct: 366 CCNLQLKNLRHLQYLNLSYN 385
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 32/56 (57%)
Query: 210 LNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHLDLSESDIEEL 265
L K+RF + + F+ ++ L+L+ + L LP GI + SL+ L L+ + ++L
Sbjct: 260 LQKHRFSDLSSSTFRCFTRVQELDLTAAHLNGLPSGIEGMNSLKKLVLNANSFDQL 315
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 7/94 (7%)
Query: 187 SLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGI 246
SL HN I++++ + P L + +L N+ I + L L+L ++++ + + +
Sbjct: 118 SLEHNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-VPL 174
Query: 247 SKLVSLQHLDLSESDIEELPGELKALVNLKCLDL 280
+ L LQ+L LS++ I +L+AL LK LD+
Sbjct: 175 AGLTKLQNLYLSKNHI----SDLRALAGLKNLDV 204
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 53/104 (50%), Gaps = 10/104 (9%)
Query: 184 RRLSLMHNQITNLSE--IPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTS 241
R+++ +N+IT++ E + L NR + + + F+ + SLK L L +++T
Sbjct: 60 RKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITC 119
Query: 242 LP----LGISKLVSLQHLDLSESDIEEL-PGELKALVNLKCLDL 280
+ +G+S S++ L L ++ I + PG L +L L+L
Sbjct: 120 VGNDSFIGLS---SVRLLSLYDNQITTVAPGAFDTLHSLSTLNL 160
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 186 LSLMHNQITNLSEIPTCPHLLTFFLNKNRFQMI 218
L+L +NQIT++S I P++ FLN N+ I
Sbjct: 71 LNLSNNQITDISPIQYLPNVTKLFLNGNKLTDI 103
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 10/132 (7%)
Query: 228 SLKVLNLSYSKLTSLPLGISKLVSLQHLDLSESDIEELPGELKALVNLK---CLDLEYTG 284
SL+ L+LS++ + L LQHLD S ++ + E A ++L+ LD+ YT
Sbjct: 372 SLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVT-EFSAFLSLEKLLYLDISYTN 430
Query: 285 NLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGLKSLEVISF 344
I + L+ L+ L+M G N+F + + S++F + L LE IS+
Sbjct: 431 TKIDFDGIFLG-LTSLNTLKMAG---NSFKDNTL-SNVFANTTNLTFLDLSKCQLEQISW 485
Query: 345 TLRSS-HGLQMI 355
+ + H LQ++
Sbjct: 486 GVFDTLHRLQLL 497
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 10/132 (7%)
Query: 228 SLKVLNLSYSKLTSLPLGISKLVSLQHLDLSESDIEELPGELKALVNLK---CLDLEYTG 284
SL+ L+LS++ + L LQHLD S ++ + E A ++L+ LD+ YT
Sbjct: 377 SLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVT-EFSAFLSLEKLLYLDISYTN 435
Query: 285 NLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGLKSLEVISF 344
I + L+ L+ L+M G N+F + + S++F + L LE IS+
Sbjct: 436 TKIDFDGIFLG-LTSLNTLKMAG---NSFKDNTL-SNVFANTTNLTFLDLSKCQLEQISW 490
Query: 345 TLRSS-HGLQMI 355
+ + H LQ++
Sbjct: 491 GVFDTLHRLQLL 502
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 7/94 (7%)
Query: 187 SLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGI 246
SL HN I++++ + P L + +L N+ I + L L+L ++++ + + +
Sbjct: 116 SLEHNGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDI-VPL 172
Query: 247 SKLVSLQHLDLSESDIEELPGELKALVNLKCLDL 280
+ L LQ+L LS++ I +L+AL LK LD+
Sbjct: 173 AGLTKLQNLYLSKNHI----SDLRALAGLKNLDV 202
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 7/94 (7%)
Query: 187 SLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGI 246
SL HN I++++ + P L + +L N+ I + L L+L ++++ + + +
Sbjct: 118 SLEHNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-VPL 174
Query: 247 SKLVSLQHLDLSESDIEELPGELKALVNLKCLDL 280
+ L LQ+L LS++ I +L+AL LK LD+
Sbjct: 175 AGLTKLQNLYLSKNHI----SDLRALAGLKNLDV 204
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 4/94 (4%)
Query: 187 SLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGI 246
SL HN I++++ + P L + +L N+ I + L L+L +++ + + +
Sbjct: 116 SLEHNGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQIRRI-VPL 172
Query: 247 SKLVSLQHLDLSESDIEELPGELKALVNLKCLDL 280
++L LQ+L LS++ I +L L+ L NL L+L
Sbjct: 173 ARLTKLQNLYLSKNHISDLRA-LRGLKNLDVLEL 205
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 7/94 (7%)
Query: 187 SLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGI 246
SL HN I++++ + P L + +L N+ I + L L+L ++++ + + +
Sbjct: 136 SLEHNGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDI-VPL 192
Query: 247 SKLVSLQHLDLSESDIEELPGELKALVNLKCLDL 280
+ L LQ+L LS++ I +L+AL LK LD+
Sbjct: 193 AGLTKLQNLYLSKNHI----SDLRALAGLKNLDV 222
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 7/94 (7%)
Query: 187 SLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGI 246
SL HN I++++ + P L + +L N+ I + L L+L ++++ + + +
Sbjct: 136 SLEHNGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDI-VPL 192
Query: 247 SKLVSLQHLDLSESDIEELPGELKALVNLKCLDL 280
+ L LQ+L LS++ I +L+AL LK LD+
Sbjct: 193 AGLTKLQNLYLSKNHI----SDLRALAGLKNLDV 222
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 7/94 (7%)
Query: 187 SLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGI 246
SL HN I++++ + P L + +L N+ I + L L+L ++++ + + +
Sbjct: 136 SLEHNGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDI-VPL 192
Query: 247 SKLVSLQHLDLSESDIEELPGELKALVNLKCLDL 280
+ L LQ+L LS++ I +L+AL LK LD+
Sbjct: 193 AGLTKLQNLYLSKNHI----SDLRALAGLKNLDV 222
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 210 LNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHLDLSESDIEEL 265
L ++RF I + FQ L+ L+L+ + L LP G+ L L+ L LS + ++L
Sbjct: 258 LQEHRFSDISSTTFQCFTQLQELDLTATHLKGLPSGMKGLNLLKKLVLSVNHFDQL 313
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,918,955
Number of Sequences: 62578
Number of extensions: 653417
Number of successful extensions: 1618
Number of sequences better than 100.0: 104
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 70
Number of HSP's that attempted gapping in prelim test: 1397
Number of HSP's gapped (non-prelim): 206
length of query: 558
length of database: 14,973,337
effective HSP length: 104
effective length of query: 454
effective length of database: 8,465,225
effective search space: 3843212150
effective search space used: 3843212150
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)