Query 044595
Match_columns 558
No_of_seqs 353 out of 3165
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 04:51:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044595.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044595hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3.4E-63 7.4E-68 531.8 22.6 531 2-552 339-883 (889)
2 PLN03210 Resistant to P. syrin 100.0 3.8E-45 8.3E-50 413.7 28.9 482 2-520 372-912 (1153)
3 PLN00113 leucine-rich repeat r 99.9 1.8E-21 3.8E-26 221.1 15.4 314 179-518 116-445 (968)
4 PLN00113 leucine-rich repeat r 99.9 2.9E-21 6.4E-26 219.3 14.9 132 178-310 137-272 (968)
5 KOG0444 Cytoskeletal regulator 99.8 2.9E-23 6.4E-28 203.9 -4.9 328 163-520 36-381 (1255)
6 PLN03210 Resistant to P. syrin 99.8 2.9E-20 6.3E-25 211.5 15.9 318 181-537 532-906 (1153)
7 KOG0444 Cytoskeletal regulator 99.8 3.2E-22 6.9E-27 196.7 -2.7 293 175-509 97-394 (1255)
8 KOG0472 Leucine-rich repeat pr 99.8 1.1E-20 2.4E-25 177.0 -3.6 326 173-512 198-539 (565)
9 KOG4194 Membrane glycoprotein 99.8 8.4E-20 1.8E-24 178.6 0.5 300 183-520 127-434 (873)
10 KOG4194 Membrane glycoprotein 99.8 5.5E-19 1.2E-23 173.0 6.1 315 177-531 98-421 (873)
11 PF00931 NB-ARC: NB-ARC domain 99.7 2.8E-18 6.1E-23 167.0 2.4 107 2-109 179-285 (287)
12 KOG0472 Leucine-rich repeat pr 99.6 3.3E-18 7.2E-23 160.5 -7.8 259 207-534 49-307 (565)
13 KOG4658 Apoptotic ATPase [Sign 99.6 2.5E-15 5.5E-20 163.0 9.0 311 176-522 540-868 (889)
14 KOG0618 Serine/threonine phosp 99.6 1.5E-16 3.3E-21 164.1 -2.3 234 274-534 242-486 (1081)
15 KOG0617 Ras suppressor protein 99.5 2.5E-16 5.5E-21 131.1 -4.6 163 174-355 26-191 (264)
16 PRK15387 E3 ubiquitin-protein 99.5 1.9E-13 4.1E-18 145.5 13.8 74 418-511 382-455 (788)
17 KOG0618 Serine/threonine phosp 99.5 3.9E-15 8.5E-20 153.8 -2.5 285 181-510 219-506 (1081)
18 PRK15370 E3 ubiquitin-protein 99.4 2.5E-13 5.5E-18 145.3 9.3 118 182-311 179-296 (754)
19 PRK15370 E3 ubiquitin-protein 99.4 4.6E-13 1E-17 143.3 9.9 224 181-453 199-427 (754)
20 KOG0617 Ras suppressor protein 99.3 5.3E-14 1.2E-18 117.3 -4.0 136 172-310 47-185 (264)
21 KOG4237 Extracellular matrix p 99.3 1.5E-13 3.3E-18 129.3 -3.6 247 204-485 68-354 (498)
22 PRK15387 E3 ubiquitin-protein 99.3 1.2E-11 2.7E-16 131.8 9.9 235 181-488 222-456 (788)
23 cd00116 LRR_RI Leucine-rich re 99.1 5.5E-11 1.2E-15 117.7 5.0 107 201-310 21-149 (319)
24 cd00116 LRR_RI Leucine-rich re 99.1 5.1E-11 1.1E-15 118.0 4.0 158 180-349 22-205 (319)
25 KOG4341 F-box protein containi 99.1 1.1E-11 2.3E-16 118.0 -2.4 243 247-516 161-416 (483)
26 PF14580 LRR_9: Leucine-rich r 99.0 3.6E-10 7.7E-15 98.9 6.2 101 181-283 19-123 (175)
27 KOG4237 Extracellular matrix p 99.0 1.3E-10 2.7E-15 110.0 2.4 125 208-350 51-177 (498)
28 PF14580 LRR_9: Leucine-rich r 98.9 1.3E-09 2.8E-14 95.4 5.6 113 168-280 28-147 (175)
29 KOG3207 Beta-tubulin folding c 98.8 1.3E-09 2.9E-14 104.5 1.9 212 201-453 119-338 (505)
30 KOG0532 Leucine-rich repeat (L 98.7 8.2E-10 1.8E-14 109.3 -4.8 165 208-398 80-244 (722)
31 KOG4341 F-box protein containi 98.6 1.2E-09 2.6E-14 104.2 -4.0 142 364-516 295-441 (483)
32 PF13855 LRR_8: Leucine rich r 98.6 4.6E-08 1E-12 70.2 3.8 59 203-261 1-60 (61)
33 KOG1259 Nischarin, modulator o 98.6 9.4E-09 2E-13 94.0 -0.2 130 202-350 283-412 (490)
34 KOG3207 Beta-tubulin folding c 98.6 1.3E-08 2.9E-13 97.8 0.6 158 179-351 119-285 (505)
35 COG4886 Leucine-rich repeat (L 98.6 5.7E-08 1.2E-12 99.1 4.9 120 186-308 98-219 (394)
36 KOG2120 SCF ubiquitin ligase, 98.5 4.4E-09 9.5E-14 96.1 -3.2 83 418-511 286-373 (419)
37 KOG0532 Leucine-rich repeat (L 98.5 1.4E-08 3.1E-13 100.6 -1.0 134 175-312 115-248 (722)
38 KOG1259 Nischarin, modulator o 98.5 1.6E-08 3.5E-13 92.5 -1.4 131 177-311 280-412 (490)
39 COG4886 Leucine-rich repeat (L 98.4 1.5E-07 3.3E-12 96.0 3.6 158 177-353 112-271 (394)
40 KOG2120 SCF ubiquitin ligase, 98.4 1.9E-08 4E-13 92.1 -2.8 62 417-489 312-375 (419)
41 PLN03150 hypothetical protein; 98.4 1.3E-06 2.7E-11 93.7 10.0 106 204-310 419-527 (623)
42 KOG1909 Ran GTPase-activating 98.4 1.2E-07 2.7E-12 88.8 1.3 85 179-263 28-133 (382)
43 PF13855 LRR_8: Leucine rich r 98.2 1.4E-06 3.1E-11 62.4 3.9 59 181-239 1-61 (61)
44 PLN03150 hypothetical protein; 98.2 4.2E-06 9.1E-11 89.8 8.5 108 182-290 419-532 (623)
45 PF12799 LRR_4: Leucine Rich r 98.1 2.7E-06 5.9E-11 55.8 3.6 39 228-266 2-40 (44)
46 KOG1909 Ran GTPase-activating 98.1 6.8E-07 1.5E-11 84.0 0.7 246 199-487 26-308 (382)
47 KOG0531 Protein phosphatase 1, 98.1 6.4E-07 1.4E-11 91.6 -0.1 126 180-310 71-198 (414)
48 KOG1859 Leucine-rich repeat pr 98.0 1.5E-07 3.3E-12 96.0 -6.0 158 172-348 100-290 (1096)
49 PRK15386 type III secretion pr 98.0 5E-05 1.1E-09 75.0 10.9 63 224-291 49-112 (426)
50 KOG3665 ZYG-1-like serine/thre 97.9 8.7E-06 1.9E-10 87.2 4.8 130 181-311 122-263 (699)
51 PF12799 LRR_4: Leucine Rich r 97.9 1.6E-05 3.4E-10 52.2 4.2 41 250-291 1-41 (44)
52 KOG4579 Leucine-rich repeat (L 97.9 1.5E-06 3.2E-11 70.6 -1.3 110 182-292 28-141 (177)
53 KOG2982 Uncharacterized conser 97.9 6.1E-06 1.3E-10 75.9 1.7 60 202-261 70-132 (418)
54 KOG0531 Protein phosphatase 1, 97.8 3.7E-06 8.1E-11 86.0 -0.9 104 177-283 91-196 (414)
55 KOG1644 U2-associated snRNP A' 97.8 3.8E-05 8.3E-10 66.9 5.2 100 182-281 43-148 (233)
56 KOG3665 ZYG-1-like serine/thre 97.6 4.6E-05 1E-09 81.7 3.7 137 202-349 121-262 (699)
57 KOG1947 Leucine rich repeat pr 97.5 4.2E-05 9E-10 80.3 2.7 112 225-349 186-307 (482)
58 KOG2982 Uncharacterized conser 97.5 4.8E-05 1E-09 70.2 2.4 226 207-449 49-287 (418)
59 PRK15386 type III secretion pr 97.5 0.00028 6E-09 69.9 7.6 84 178-272 49-137 (426)
60 KOG1859 Leucine-rich repeat pr 97.4 5.3E-06 1.2E-10 85.1 -5.8 103 179-283 185-289 (1096)
61 KOG1947 Leucine rich repeat pr 97.3 5.9E-05 1.3E-09 79.2 0.6 239 248-517 186-443 (482)
62 KOG4579 Leucine-rich repeat (L 97.2 4.9E-05 1.1E-09 62.0 -1.1 87 181-268 53-141 (177)
63 KOG2739 Leucine-rich acidic nu 97.1 0.00028 6.1E-09 64.4 2.7 81 180-261 42-127 (260)
64 KOG1644 U2-associated snRNP A' 97.0 0.001 2.2E-08 58.3 4.5 105 203-310 42-152 (233)
65 KOG2123 Uncharacterized conser 96.8 0.00011 2.4E-09 67.3 -2.6 103 203-308 19-127 (388)
66 KOG2739 Leucine-rich acidic nu 96.6 0.0011 2.3E-08 60.6 2.2 110 201-312 41-157 (260)
67 COG5238 RNA1 Ran GTPase-activa 96.5 0.0021 4.6E-08 58.9 3.0 20 330-349 178-197 (388)
68 COG5238 RNA1 Ran GTPase-activa 96.1 0.0063 1.4E-07 55.9 3.8 44 269-312 88-134 (388)
69 PF00560 LRR_1: Leucine Rich R 95.9 0.0032 7E-08 34.2 0.8 19 229-247 2-20 (22)
70 KOG3864 Uncharacterized conser 95.8 0.0014 3.1E-08 57.4 -1.2 68 384-455 121-190 (221)
71 KOG2123 Uncharacterized conser 95.7 0.00071 1.5E-08 62.1 -3.9 97 181-279 19-123 (388)
72 PF13306 LRR_5: Leucine rich r 95.4 0.053 1.2E-06 45.2 6.8 116 178-300 9-128 (129)
73 PF00560 LRR_1: Leucine Rich R 95.2 0.0052 1.1E-07 33.4 -0.0 20 251-270 1-20 (22)
74 PF13504 LRR_7: Leucine rich r 94.7 0.019 4.1E-07 28.9 1.2 17 501-518 1-17 (17)
75 PF13504 LRR_7: Leucine rich r 93.9 0.037 8.1E-07 27.8 1.3 14 229-242 3-16 (17)
76 PF13306 LRR_5: Leucine rich r 93.3 0.22 4.7E-06 41.4 6.0 102 199-306 8-111 (129)
77 KOG0473 Leucine-rich repeat pr 93.2 0.0019 4E-08 57.9 -7.0 84 199-283 38-121 (326)
78 KOG3864 Uncharacterized conser 92.7 0.06 1.3E-06 47.5 1.6 35 364-398 152-186 (221)
79 KOG0473 Leucine-rich repeat pr 90.2 0.0072 1.6E-07 54.2 -6.6 91 217-309 32-122 (326)
80 smart00370 LRR Leucine-rich re 89.8 0.33 7.2E-06 27.4 2.3 19 250-268 2-20 (26)
81 smart00369 LRR_TYP Leucine-ric 89.8 0.33 7.2E-06 27.4 2.3 19 250-268 2-20 (26)
82 smart00370 LRR Leucine-rich re 87.7 0.46 9.9E-06 26.8 1.9 21 226-246 1-21 (26)
83 smart00369 LRR_TYP Leucine-ric 87.7 0.46 9.9E-06 26.8 1.9 21 226-246 1-21 (26)
84 smart00367 LRR_CC Leucine-rich 84.7 0.63 1.4E-05 26.3 1.4 17 500-516 1-17 (26)
85 PRK04841 transcriptional regul 79.2 9.6 0.00021 43.6 9.7 123 6-153 206-332 (903)
86 smart00364 LRR_BAC Leucine-ric 71.0 3 6.4E-05 23.6 1.4 17 228-244 3-19 (26)
87 smart00365 LRR_SD22 Leucine-ri 62.7 6.5 0.00014 22.3 1.7 14 250-263 2-15 (26)
88 PF13516 LRR_6: Leucine Rich r 56.9 5.9 0.00013 21.6 0.9 14 227-240 2-15 (24)
89 smart00368 LRR_RI Leucine rich 48.2 16 0.00034 20.9 1.8 13 228-240 3-15 (28)
90 PF12221 HflK_N: Bacterial mem 36.0 33 0.00072 22.0 2.0 18 1-18 20-37 (42)
91 KOG4308 LRR-containing protein 31.8 1.6 3.4E-05 45.4 -7.2 157 181-350 115-303 (478)
92 PF14050 Nudc_N: N-terminal co 23.0 1.8E+02 0.0038 20.6 4.0 30 3-32 2-31 (62)
93 PRK00080 ruvB Holliday junctio 20.6 6.8E+02 0.015 24.5 9.3 107 6-135 203-311 (328)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.4e-63 Score=531.80 Aligned_cols=531 Identities=40% Similarity=0.658 Sum_probs=436.2
Q ss_pred ccHHHHHHHHHHHcCCchhHHHHHHHHHcCCCChhhHHHHHHHHhcc-CCCCCCCccchhhhHHhcccCCCCcchhhhhc
Q 044595 2 PDILQLAQAAARECDGLPLALITIGRAMACKKTPDEWIYDIEVLRTS-SSQFPGLGNEVYPLLKFSYDRLPSDTIKSCLL 80 (558)
Q Consensus 2 ~~l~~i~~~iv~~c~GlPLai~~ig~~L~~~~~~~~W~~~~~~l~~~-~~~~~~~~~~i~~~L~~SY~~L~~~~lk~cfl 80 (558)
+++.++|++||++|+|+|||+++||+.|++|.+.++|+++.+.+.+. ..+.++..+.|+++|++|||+||+ ++|.||+
T Consensus 339 ~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~-~lK~CFL 417 (889)
T KOG4658|consen 339 PDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPE-ELKSCFL 417 (889)
T ss_pred ccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhH-HHHHHHH
Confidence 45899999999999999999999999999999999999999999887 566667778999999999999996 5999999
Q ss_pred ccccCCCCCccCHHHHHHHHHHcCcccc-CCchhhHHhHHHHHHHHHHhcccccCC----CCceehhhHHHHHHHHHHhh
Q 044595 81 YCSLYPEDYCISKEKLIDCWIGEGFLTE-RDRIGEQKEGYHILGILLHACLLEEGG----DGEVKMHDVIRDMAIWIACD 155 (558)
Q Consensus 81 ~~~~fp~~~~i~~~~Li~~W~aeg~i~~-~~~~~~~~~~~~~~~~L~~~~l~~~~~----~~~~~mhdl~~~~~~~~~~~ 155 (558)
|||+||+||.|++++||.+|+||||+.+ ..+..+++.|+.|+++|+.++|+...+ ..+|+|||+|+|||.+++.+
T Consensus 418 ycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~ 497 (889)
T KOG4658|consen 418 YCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASD 497 (889)
T ss_pred hhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhcc
Confidence 9999999999999999999999999999 678899999999999999999998864 37899999999999999998
Q ss_pred cccccceEEEecCcccccCCCCCCcccceEEEeecccccccCCCCCCCCceEEEeecCC--ccccCchhhhCCCCCcEEE
Q 044595 156 IEKEKENFFVNAGVGLVEAPDVTGWEKARRLSLMHNQITNLSEIPTCPHLLTFFLNKNR--FQMIPNDFFQFMPSLKVLN 233 (558)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~--~~~~~~~~~~~l~~L~~L~ 233 (558)
...+.++.++..+.+....+....+..+|++++.++.+..++.-..++.|++|.+.+|. +..++..+|..++.|++||
T Consensus 498 ~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLD 577 (889)
T KOG4658|consen 498 FGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLD 577 (889)
T ss_pred ccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEE
Confidence 77777778877776777788888899999999999999988887888899999999986 7889999999999999999
Q ss_pred cCCC-CCcccCcccCCCCCCCeEeccCCCCCCcchhhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCCc
Q 044595 234 LSYS-KLTSLPLGISKLVSLQHLDLSESDIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNA 312 (558)
Q Consensus 234 l~~~-~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~ 312 (558)
+++| .+..+|.+|+.|.+||||+++++.+.++|.++++|.+|.+|++..+..+..+| ++...|.+|++|.+.......
T Consensus 578 Ls~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~-~i~~~L~~Lr~L~l~~s~~~~ 656 (889)
T KOG4658|consen 578 LSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIP-GILLELQSLRVLRLPRSALSN 656 (889)
T ss_pred CCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccccccccc-chhhhcccccEEEeecccccc
Confidence 9988 78899999999999999999999999999999999999999999987777775 446779999999998765221
Q ss_pred ccccccCCcccCCcchhHHHhccCCCcceEEEEEccchhHHHHhccccccccccceeeeeccCCCcccccchhhhhhhhh
Q 044595 313 FDEASKDSSLFGGGEFIVEELLGLKSLEVISFTLRSSHGLQMILSSDQLRSCTRALSFQCFNDSTSLEVSALADLKQLKM 392 (558)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 392 (558)
+...+.++.++++|+.+.+...+......+.....+....+.+.+.++.. .....++..+.+|+.
T Consensus 657 -------------~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~--~~~~~~~~~l~~L~~ 721 (889)
T KOG4658|consen 657 -------------DKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSK--RTLISSLGSLGNLEE 721 (889)
T ss_pred -------------chhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhccccc--ceeecccccccCcce
Confidence 56778899999999999998776644555555555555555666544222 112335778899999
Q ss_pred hhhccccccceeEeccCCcccccc-cccccEEEEcCCCCCCCchhhhccCCCceEEEecCchhHHHhhcCccCCcccccc
Q 044595 393 LRIARSEILEELKMDCAGEVRQFV-FHSLNKVEIYGCSKLKDLTFLVFAPNLKSIKVTGSHAMEAIISVGKFAEVPEVMA 471 (558)
Q Consensus 393 L~l~~~~~l~~l~~~~~~~~~~~~-~~~L~~L~L~~~~~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 471 (558)
|.|.+|...+... .+........ |+++..+.+.+|...+++.|..-.|+|+.|.+..|..+++++....... ....
T Consensus 722 L~i~~~~~~e~~~-~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~--~l~~ 798 (889)
T KOG4658|consen 722 LSILDCGISEIVI-EWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALL--ELKE 798 (889)
T ss_pred EEEEcCCCchhhc-ccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhh--hccc
Confidence 9999996654322 2322222222 7789999999999999999998999999999999999888764221111 1111
Q ss_pred cCCCCccccee-eccCcccccccccCCCCCCCcceEeeecCCCCcCCCCCCCcccccc---eeEecchhcccccccCccc
Q 044595 472 NLNPFAKLQNL-EVIGAINLKSIYWKPLRFPHLKTMSFFHCNKLKMLPLDSNSAREHS---IVIRGDRMWWAQLQWEDEA 547 (558)
Q Consensus 472 ~~~~~~~L~~L-~l~~c~~L~~~~~~~~~l~~L~~L~i~~C~~L~~lP~~~~~~~~~~---~~i~~~~~~~~~~~~~~~~ 547 (558)
....|.++..+ .+.+...+..+......++.|+.+.+..||++.++|.......... ..--.+.+|.+.+.|+++.
T Consensus 799 ~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~~~~v~~~~~~ 878 (889)
T KOG4658|consen 799 LILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGEWLEGVYWEDEL 878 (889)
T ss_pred EEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCccccccceeccccceeecCCccceeeEEehhhh
Confidence 23456777777 4777777777776667778899999999999999999876543332 2222234788899999998
Q ss_pred ccccc
Q 044595 548 TRNAF 552 (558)
Q Consensus 548 ~~~~~ 552 (558)
+...+
T Consensus 879 ~~~~~ 883 (889)
T KOG4658|consen 879 TKLRF 883 (889)
T ss_pred hhhhc
Confidence 87665
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=3.8e-45 Score=413.72 Aligned_cols=482 Identities=21% Similarity=0.268 Sum_probs=295.3
Q ss_pred ccHHHHHHHHHHHcCCchhHHHHHHHHHcCCCChhhHHHHHHHHhccCCCCCCCccchhhhHHhcccCCCCcchhhhhcc
Q 044595 2 PDILQLAQAAARECDGLPLALITIGRAMACKKTPDEWIYDIEVLRTSSSQFPGLGNEVYPLLKFSYDRLPSDTIKSCLLY 81 (558)
Q Consensus 2 ~~l~~i~~~iv~~c~GlPLai~~ig~~L~~~~~~~~W~~~~~~l~~~~~~~~~~~~~i~~~L~~SY~~L~~~~lk~cfl~ 81 (558)
+++++++++||++|+|+||||+++|+.|++ ++.++|+.++++++.... ++|+++|++||++|+++..|.||+|
T Consensus 372 ~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~l~~L~~~~~------~~I~~~L~~SYd~L~~~~~k~~Fl~ 444 (1153)
T PLN03210 372 DGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWMDMLPRLRNGLD------GKIEKTLRVSYDGLNNKKDKAIFRH 444 (1153)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHHHHHHHHHhCcc------HHHHHHHHHhhhccCccchhhhhhe
Confidence 468999999999999999999999999997 689999999999987532 4899999999999987458999999
Q ss_pred cccCCCCCccCHHHHHHHHHHcCccccCCchhhHHhHHHHHHHHHHhcccccCCCCceehhhHHHHHHHHHHhhcc--cc
Q 044595 82 CSLYPEDYCISKEKLIDCWIGEGFLTERDRIGEQKEGYHILGILLHACLLEEGGDGEVKMHDVIRDMAIWIACDIE--KE 159 (558)
Q Consensus 82 ~~~fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~mhdl~~~~~~~~~~~~~--~~ 159 (558)
+|+||.++.+ ..+..|+|.+.+... .-++.|++++|++.. .+.++|||++|+||+++++++. +.
T Consensus 445 ia~ff~~~~~---~~v~~~l~~~~~~~~----------~~l~~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~~~~~ 510 (1153)
T PLN03210 445 IACLFNGEKV---NDIKLLLANSDLDVN----------IGLKNLVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQSNEPG 510 (1153)
T ss_pred ehhhcCCCCH---HHHHHHHHhcCCCch----------hChHHHHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhcCCCC
Confidence 9999998744 347778887755432 238899999999885 4679999999999999987653 23
Q ss_pred cceEEEecCc---------ccc-----------------cCCCCCCcccceEEEeecccccc-------cC-CCCCC-CC
Q 044595 160 KENFFVNAGV---------GLV-----------------EAPDVTGWEKARRLSLMHNQITN-------LS-EIPTC-PH 204 (558)
Q Consensus 160 ~~~~~~~~~~---------~~~-----------------~~~~~~~~~~lr~L~l~~~~~~~-------l~-~~~~~-~~ 204 (558)
++.+.+...+ +.. ....+..+.+++.|.+..+.... ++ .+..+ .+
T Consensus 511 ~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~ 590 (1153)
T PLN03210 511 EREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPK 590 (1153)
T ss_pred cceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcc
Confidence 3444433210 000 01124556677777765443211 11 12222 34
Q ss_pred ceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcccCCCCCCCeEeccCC-CCCCcchhhhcCCCCcEEeccCC
Q 044595 205 LLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHLDLSES-DIEELPGELKALVNLKCLDLEYT 283 (558)
Q Consensus 205 Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~~ 283 (558)
||.|.+.++.+..+|..+ .+.+|+.|++.++.++.+|.++..+++|++|+++++ .+..+| .++.+++|++|++.+|
T Consensus 591 Lr~L~~~~~~l~~lP~~f--~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c 667 (1153)
T PLN03210 591 LRLLRWDKYPLRCMPSNF--RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDC 667 (1153)
T ss_pred cEEEEecCCCCCCCCCcC--CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCC
Confidence 677777766666666652 356666666666666666666666666666666665 455555 3556666666666666
Q ss_pred CCCCcCchhhhcCCCCCcEEEeeccCCCccccc-ccCCc-----ccCCcchhHHHh-ccCCCcceEEEEEccchhHHHHh
Q 044595 284 GNLITIPRQLISNLSRLHVLRMFGAGHNAFDEA-SKDSS-----LFGGGEFIVEEL-LGLKSLEVISFTLRSSHGLQMIL 356 (558)
Q Consensus 284 ~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~L-~~l~~L~~L~l~~~~~~~~~~~~ 356 (558)
..+..+|.. ++++++|+.|++.+|.....-.. ....+ +.+ ...+..+ ....+|+.|++..+....++...
T Consensus 668 ~~L~~lp~s-i~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsg--c~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~ 744 (1153)
T PLN03210 668 SSLVELPSS-IQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSG--CSRLKSFPDISTNISWLDLDETAIEEFPSNL 744 (1153)
T ss_pred CCccccchh-hhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCC--CCCccccccccCCcCeeecCCCccccccccc
Confidence 666666655 56666666666665543210000 00000 000 0000000 01233444444433332222111
Q ss_pred ccccccccccceeeeeccCCCc------ccccchhhhhhhhhhhhccccccceeEeccCCcccccccccccEEEEcCCCC
Q 044595 357 SSDQLRSCTRALSFQCFNDSTS------LEVSALADLKQLKMLRIARSEILEELKMDCAGEVRQFVFHSLNKVEIYGCSK 430 (558)
Q Consensus 357 ~~~~~~~~L~~L~l~~~~~~~~------~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~~~~ 430 (558)
. ..+|..|.+.++..... ........+++|+.|++++|..+..+|..+.. +++|+.|+|++|..
T Consensus 745 ~----l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~------L~~L~~L~Ls~C~~ 814 (1153)
T PLN03210 745 R----LENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQN------LHKLEHLEIENCIN 814 (1153)
T ss_pred c----ccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhC------CCCCCEEECCCCCC
Confidence 0 11233333322111000 00000112345666666666555555444332 56666666666666
Q ss_pred CCCchhhhccCCCceEEEecCchhHHHhhcC-c-------cCCcccccccCCCCcccceeeccCcccccccccCCCCCCC
Q 044595 431 LKDLTFLVFAPNLKSIKVTGSHAMEAIISVG-K-------FAEVPEVMANLNPFAKLQNLEVIGAINLKSIYWKPLRFPH 502 (558)
Q Consensus 431 l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~-~-------~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~l~~ 502 (558)
++.+|....+++|+.|++++|..+..++... . ...+..++..+..+++|+.|++++|.++..++.....+++
T Consensus 815 L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~ 894 (1153)
T PLN03210 815 LETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKH 894 (1153)
T ss_pred cCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccC
Confidence 6665544456666666666666555443210 0 0112344556778999999999999999999988889999
Q ss_pred cceEeeecCCCCcCCCCC
Q 044595 503 LKTMSFFHCNKLKMLPLD 520 (558)
Q Consensus 503 L~~L~i~~C~~L~~lP~~ 520 (558)
|+.+++.+|++|+.++..
T Consensus 895 L~~L~l~~C~~L~~~~l~ 912 (1153)
T PLN03210 895 LETVDFSDCGALTEASWN 912 (1153)
T ss_pred CCeeecCCCcccccccCC
Confidence 999999999999977653
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.86 E-value=1.8e-21 Score=221.14 Aligned_cols=314 Identities=19% Similarity=0.204 Sum_probs=188.1
Q ss_pred CcccceEEEeecccccccCCCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCc-ccCcccCCCCCCCeEec
Q 044595 179 GWEKARRLSLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLT-SLPLGISKLVSLQHLDL 257 (558)
Q Consensus 179 ~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l 257 (558)
.++++++|++++|.+........+++|++|++++|.+....+..++.+++|++|++++|.+. .+|..++++++|++|++
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 195 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL 195 (968)
T ss_pred cCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeec
Confidence 45666777776666654333345667777777777665333333667777777777777665 56777777777777777
Q ss_pred cCCCCC-CcchhhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhccC
Q 044595 258 SESDIE-ELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGL 336 (558)
Q Consensus 258 ~~~~l~-~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l 336 (558)
++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++.++... ...+..++.+
T Consensus 196 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~---------------~~~p~~l~~l 259 (968)
T PLN00113 196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLT---------------GPIPSSLGNL 259 (968)
T ss_pred cCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCceec---------------cccChhHhCC
Confidence 777655 56777777777777777777544556655 677777777777666442 2345567777
Q ss_pred CCcceEEEEEccchh-HHHHhccccccccccceeeeeccCCCcccccchhhhhhhhhhhhccccccceeEeccCCccccc
Q 044595 337 KSLEVISFTLRSSHG-LQMILSSDQLRSCTRALSFQCFNDSTSLEVSALADLKQLKMLRIARSEILEELKMDCAGEVRQF 415 (558)
Q Consensus 337 ~~L~~L~l~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~ 415 (558)
++|+.|++..+...+ .+..... ..+|+.|+++++.-....+ ..+..+++|+.|++.++.....++..+.
T Consensus 260 ~~L~~L~L~~n~l~~~~p~~l~~---l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~l~~n~~~~~~~~~~~------ 329 (968)
T PLN00113 260 KNLQYLFLYQNKLSGPIPPSIFS---LQKLISLDLSDNSLSGEIP-ELVIQLQNLEILHLFSNNFTGKIPVALT------ 329 (968)
T ss_pred CCCCEEECcCCeeeccCchhHhh---ccCcCEEECcCCeeccCCC-hhHcCCCCCcEEECCCCccCCcCChhHh------
Confidence 777777776554432 1111111 1267777776654332222 2355677777777777644333332222
Q ss_pred ccccccEEEEcCCCCCCCch-hhhccCCCceEEEecCchhHHHhhc----CccCCc--------ccccccCCCCccccee
Q 044595 416 VFHSLNKVEIYGCSKLKDLT-FLVFAPNLKSIKVTGSHAMEAIISV----GKFAEV--------PEVMANLNPFAKLQNL 482 (558)
Q Consensus 416 ~~~~L~~L~L~~~~~l~~l~-~l~~l~~L~~L~l~~c~~l~~~~~~----~~~~~~--------~~~~~~~~~~~~L~~L 482 (558)
.+++|+.|++++|.....+| .++.+++|+.|++++|.....++.. ..+..+ ...+..+..+++|++|
T Consensus 330 ~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L 409 (968)
T PLN00113 330 SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRV 409 (968)
T ss_pred cCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEE
Confidence 26778888887774332333 4677777888888776543222210 000000 0122345567788888
Q ss_pred eccCcccccccccCCCCCCCcceEeeecCCCCcCCC
Q 044595 483 EVIGAINLKSIYWKPLRFPHLKTMSFFHCNKLKMLP 518 (558)
Q Consensus 483 ~l~~c~~L~~~~~~~~~l~~L~~L~i~~C~~L~~lP 518 (558)
++++|.--..+|.....+++|+.|++++|.--..+|
T Consensus 410 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~ 445 (968)
T PLN00113 410 RLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRIN 445 (968)
T ss_pred ECcCCEeeeECChhHhcCCCCCEEECcCCcccCccC
Confidence 888776555566556677888888888764333333
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.86 E-value=2.9e-21 Score=219.29 Aligned_cols=132 Identities=23% Similarity=0.342 Sum_probs=90.5
Q ss_pred CCcccceEEEeecccccc-cC-CCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCc-ccCcccCCCCCCCe
Q 044595 178 TGWEKARRLSLMHNQITN-LS-EIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLT-SLPLGISKLVSLQH 254 (558)
Q Consensus 178 ~~~~~lr~L~l~~~~~~~-l~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~lp~~i~~L~~L~~ 254 (558)
..++++++|++++|.+.. ++ .+..+++|++|++++|.+....+..+.++++|++|++++|.+. .+|..++++++|++
T Consensus 137 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 216 (968)
T PLN00113 137 GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW 216 (968)
T ss_pred cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence 345677777777777653 23 3566777777777777765433333677777777777777666 55777777777777
Q ss_pred EeccCCCCC-CcchhhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCC
Q 044595 255 LDLSESDIE-ELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGH 310 (558)
Q Consensus 255 L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 310 (558)
|++++|.+. .+|..++.+++|++|++++|.....+|.. ++++++|++|++.++..
T Consensus 217 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l 272 (968)
T PLN00113 217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKL 272 (968)
T ss_pred EECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCee
Confidence 777777665 56777777777777777777544456655 67777777777766543
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=2.9e-23 Score=203.90 Aligned_cols=328 Identities=24% Similarity=0.344 Sum_probs=231.9
Q ss_pred EEEecCcccccCC-CCCCcccceEEEeecccccccC-CCCCCCCceEEEeecCCcc--ccCchhhhCCCCCcEEEcCCCC
Q 044595 163 FFVNAGVGLVEAP-DVTGWEKARRLSLMHNQITNLS-EIPTCPHLLTFFLNKNRFQ--MIPNDFFQFMPSLKVLNLSYSK 238 (558)
Q Consensus 163 ~~~~~~~~~~~~~-~~~~~~~lr~L~l~~~~~~~l~-~~~~~~~Lr~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~ 238 (558)
+..........++ .+..+.++.+|++..|++..+. .+..++.||++++..|.+. .+|+++| +++.|.+|||++|+
T Consensus 36 WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNq 114 (1255)
T KOG0444|consen 36 WLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQ 114 (1255)
T ss_pred EEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhh
Confidence 3333444444333 3556678889999888887764 5778889999999888775 6888855 48999999999999
Q ss_pred CcccCcccCCCCCCCeEeccCCCCCCcchh-hhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccc
Q 044595 239 LTSLPLGISKLVSLQHLDLSESDIEELPGE-LKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEAS 317 (558)
Q Consensus 239 l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~ 317 (558)
++..|..+..-+++-+|+|++|+|..+|.. +-+|+-|-.|++++| .+..+|+. +.+|.+|++|.++++...
T Consensus 115 L~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ-~RRL~~LqtL~Ls~NPL~------ 186 (1255)
T KOG0444|consen 115 LREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQ-IRRLSMLQTLKLSNNPLN------ 186 (1255)
T ss_pred hhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHH-HHHHhhhhhhhcCCChhh------
Confidence 999999888889999999999999999876 567888889999987 78889988 889999999999887663
Q ss_pred cCCcccCCcchhHHHhccCCCcceEEEEEccchhHHHHhccccccccccceeeeeccCCCcccccchhhhhhhhhhhhcc
Q 044595 318 KDSSLFGGGEFIVEELLGLKSLEVISFTLRSSHGLQMILSSDQLRSCTRALSFQCFNDSTSLEVSALADLKQLKMLRIAR 397 (558)
Q Consensus 318 ~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 397 (558)
...+.+|..++.|++|+++...-+ ...+..+.....+|..++++. +++..++ ..+-.+++|+.|++++
T Consensus 187 ---------hfQLrQLPsmtsL~vLhms~TqRT-l~N~Ptsld~l~NL~dvDlS~-N~Lp~vP-ecly~l~~LrrLNLS~ 254 (1255)
T KOG0444|consen 187 ---------HFQLRQLPSMTSLSVLHMSNTQRT-LDNIPTSLDDLHNLRDVDLSE-NNLPIVP-ECLYKLRNLRRLNLSG 254 (1255)
T ss_pred ---------HHHHhcCccchhhhhhhcccccch-hhcCCCchhhhhhhhhccccc-cCCCcch-HHHhhhhhhheeccCc
Confidence 345566666777777777654432 222223333333666666654 3333332 2355677888888887
Q ss_pred ccccceeEeccCCcccccccccccEEEEcCCCCCCCch-hhhccCCCceEEEecCchh-HHHh-hcCccC----------
Q 044595 398 SEILEELKMDCAGEVRQFVFHSLNKVEIYGCSKLKDLT-FLVFAPNLKSIKVTGSHAM-EAII-SVGKFA---------- 464 (558)
Q Consensus 398 ~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~-~l~~l~~L~~L~l~~c~~l-~~~~-~~~~~~---------- 464 (558)
+ .++.+...... ..+|+.|.++.+ +++.+| .+..++.|+.|.+.++..- +-+| +++++.
T Consensus 255 N-~iteL~~~~~~------W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN 326 (1255)
T KOG0444|consen 255 N-KITELNMTEGE------WENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN 326 (1255)
T ss_pred C-ceeeeeccHHH------Hhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc
Confidence 7 55555544433 467788888777 677655 3667777777777665421 1111 112222
Q ss_pred CcccccccCCCCcccceeeccCcccccccccCCCCCCCcceEeeecCCCCcCCCCC
Q 044595 465 EVPEVMANLNPFAKLQNLEVIGAINLKSIYWKPLRFPHLKTMSFFHCNKLKMLPLD 520 (558)
Q Consensus 465 ~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~l~~L~~L~i~~C~~L~~lP~~ 520 (558)
.++-++..+..+++|+.|.|+ |..|-.+|..+.-+|-|+.|++++.|+|..-|..
T Consensus 327 ~LElVPEglcRC~kL~kL~L~-~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPKP 381 (1255)
T KOG0444|consen 327 KLELVPEGLCRCVKLQKLKLD-HNRLITLPEAIHLLPDLKVLDLRENPNLVMPPKP 381 (1255)
T ss_pred ccccCchhhhhhHHHHHhccc-ccceeechhhhhhcCCcceeeccCCcCccCCCCc
Confidence 223456778889999999995 5788888988888899999999999999976654
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.83 E-value=2.9e-20 Score=211.54 Aligned_cols=318 Identities=17% Similarity=0.275 Sum_probs=221.5
Q ss_pred ccceEEEeeccccccc----CCCCCCCCceEEEeecCCc-------cccCchhhhCCCCCcEEEcCCCCCcccCcccCCC
Q 044595 181 EKARRLSLMHNQITNL----SEIPTCPHLLTFFLNKNRF-------QMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKL 249 (558)
Q Consensus 181 ~~lr~L~l~~~~~~~l----~~~~~~~~Lr~L~l~~~~~-------~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L 249 (558)
.+++.+.+....+..+ ..+..|++|+.|.+..+.. ..+|..+..-..+||+|++.++.++.+|..+ ..
T Consensus 532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~ 610 (1153)
T PLN03210 532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RP 610 (1153)
T ss_pred ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-Cc
Confidence 3556666554444332 2367899999999975532 2456663333457999999999999999887 57
Q ss_pred CCCCeEeccCCCCCCcchhhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchh
Q 044595 250 VSLQHLDLSESDIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFI 329 (558)
Q Consensus 250 ~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 329 (558)
.+|+.|++.++.+..+|..+..+++|+.|++++|..+..+|. ++.+++|++|++.+|... ...
T Consensus 611 ~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L---------------~~l 673 (1153)
T PLN03210 611 ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSL---------------VEL 673 (1153)
T ss_pred cCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCc---------------ccc
Confidence 999999999999999999999999999999999988999986 789999999999998653 234
Q ss_pred HHHhccCCCcceEEEEEccchhHHHHhccccccccccceeeeeccCCCcccccchhhhhhhhhhhhccccccceeEeccC
Q 044595 330 VEELLGLKSLEVISFTLRSSHGLQMILSSDQLRSCTRALSFQCFNDSTSLEVSALADLKQLKMLRIARSEILEELKMDCA 409 (558)
Q Consensus 330 ~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~ 409 (558)
+..++.+++|+.|.+..+.. +..+..... ..+|+.|.+++|..+...+. ..++|+.|++.++. ++.++....
T Consensus 674 p~si~~L~~L~~L~L~~c~~--L~~Lp~~i~-l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~-i~~lP~~~~ 745 (1153)
T PLN03210 674 PSSIQYLNKLEDLDMSRCEN--LEILPTGIN-LKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETA-IEEFPSNLR 745 (1153)
T ss_pred chhhhccCCCCEEeCCCCCC--cCccCCcCC-CCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCc-ccccccccc
Confidence 56678888888888875431 122222111 23677888887765543321 12345555554442 222222110
Q ss_pred ---------------------C---cccccccccccEEEEcCCCCCCCch-hhhccCCCceEEEecCchhHHHhhcCccC
Q 044595 410 ---------------------G---EVRQFVFHSLNKVEIYGCSKLKDLT-FLVFAPNLKSIKVTGSHAMEAIISVGKFA 464 (558)
Q Consensus 410 ---------------------~---~~~~~~~~~L~~L~L~~~~~l~~l~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~ 464 (558)
. ......+++|+.|+|++|+.+..+| .++.+++|+.|+|++|..++.++.
T Consensus 746 l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~----- 820 (1153)
T PLN03210 746 LENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT----- 820 (1153)
T ss_pred ccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC-----
Confidence 0 0001235789999999998888765 588999999999999998777654
Q ss_pred CcccccccCCCCcccceeeccCcccccc--------------------cccCCCCCCCcceEeeecCCCCcCCCCCCCc-
Q 044595 465 EVPEVMANLNPFAKLQNLEVIGAINLKS--------------------IYWKPLRFPHLKTMSFFHCNKLKMLPLDSNS- 523 (558)
Q Consensus 465 ~~~~~~~~~~~~~~L~~L~l~~c~~L~~--------------------~~~~~~~l~~L~~L~i~~C~~L~~lP~~~~~- 523 (558)
.. .+++|++|++++|.++.. +|.....+++|+.|++.+|++|+.+|.....
T Consensus 821 -------~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L 892 (1153)
T PLN03210 821 -------GI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKL 892 (1153)
T ss_pred -------CC-CccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccc
Confidence 11 456666666666655544 3444556899999999999999999986432
Q ss_pred ccccceeEecchhc
Q 044595 524 AREHSIVIRGDRMW 537 (558)
Q Consensus 524 ~~~~~~~i~~~~~~ 537 (558)
..+....+.+|...
T Consensus 893 ~~L~~L~l~~C~~L 906 (1153)
T PLN03210 893 KHLETVDFSDCGAL 906 (1153)
T ss_pred cCCCeeecCCCccc
Confidence 44555667777654
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.82 E-value=3.2e-22 Score=196.69 Aligned_cols=293 Identities=20% Similarity=0.248 Sum_probs=205.9
Q ss_pred CCCCCcccceEEEeecccccccCC-CCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcccCCCCCCC
Q 044595 175 PDVTGWEKARRLSLMHNQITNLSE-IPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQ 253 (558)
Q Consensus 175 ~~~~~~~~lr~L~l~~~~~~~l~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~ 253 (558)
+++-.+..+..|+++.|.+..+|. +...+++-+|++++|.+..+|...|-++..|-+|||++|.+..+|..+..|.+|+
T Consensus 97 ~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~Lq 176 (1255)
T KOG0444|consen 97 TDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQ 176 (1255)
T ss_pred chhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhh
Confidence 455666777888888888777664 5566777788888888888888878888888888888888888888888888888
Q ss_pred eEeccCCCCCCc-chhhhcCCCCcEEeccCCCC-CCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHH
Q 044595 254 HLDLSESDIEEL-PGELKALVNLKCLDLEYTGN-LITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVE 331 (558)
Q Consensus 254 ~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~-l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (558)
+|+|++|.+... -..+-.|++|++|.+++++. +..+|.. +..|.+|+.++++.+.. ...++
T Consensus 177 tL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts-ld~l~NL~dvDlS~N~L----------------p~vPe 239 (1255)
T KOG0444|consen 177 TLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRDVDLSENNL----------------PIVPE 239 (1255)
T ss_pred hhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc-hhhhhhhhhccccccCC----------------CcchH
Confidence 888888754411 01223566777777777643 4557766 67777888877775543 34678
Q ss_pred HhccCCCcceEEEEEccchhHHHHhccccccccccceeeeeccCCCcccccchhhhhhhhhhhhcccccc-ceeEeccCC
Q 044595 332 ELLGLKSLEVISFTLRSSHGLQMILSSDQLRSCTRALSFQCFNDSTSLEVSALADLKQLKMLRIARSEIL-EELKMDCAG 410 (558)
Q Consensus 332 ~L~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l-~~l~~~~~~ 410 (558)
.+-++.+|+.|.++.+....+..-.+. +.++++|+++... +..++ .++..++.|+.|.+.++... +.+|....
T Consensus 240 cly~l~~LrrLNLS~N~iteL~~~~~~---W~~lEtLNlSrNQ-Lt~LP-~avcKL~kL~kLy~n~NkL~FeGiPSGIG- 313 (1255)
T KOG0444|consen 240 CLYKLRNLRRLNLSGNKITELNMTEGE---WENLETLNLSRNQ-LTVLP-DAVCKLTKLTKLYANNNKLTFEGIPSGIG- 313 (1255)
T ss_pred HHhhhhhhheeccCcCceeeeeccHHH---Hhhhhhhccccch-hccch-HHHhhhHHHHHHHhccCcccccCCccchh-
Confidence 888899999999887776544322222 2267788887633 34444 34788899999998776322 23333332
Q ss_pred cccccccccccEEEEcCCCCCCCc-hhhhccCCCceEEEecCchhHHHhhcCccCCcccccccCCCCcccceeeccCccc
Q 044595 411 EVRQFVFHSLNKVEIYGCSKLKDL-TFLVFAPNLKSIKVTGSHAMEAIISVGKFAEVPEVMANLNPFAKLQNLEVIGAIN 489 (558)
Q Consensus 411 ~~~~~~~~~L~~L~L~~~~~l~~l-~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 489 (558)
.+.+|+.+...++ .++-+ ..+..++.|+.|.|+.+..++ ++..+.-+|-|+.|+++..++
T Consensus 314 -----KL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~NrLiT-------------LPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 314 -----KLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDHNRLIT-------------LPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred -----hhhhhHHHHhhcc-ccccCchhhhhhHHHHHhcccccceee-------------chhhhhhcCCcceeeccCCcC
Confidence 3788888888887 66654 468899999999998877643 335778899999999999999
Q ss_pred ccccccCCCCCCCcceEeee
Q 044595 490 LKSIYWKPLRFPHLKTMSFF 509 (558)
Q Consensus 490 L~~~~~~~~~l~~L~~L~i~ 509 (558)
|.--|....+-.+|+.-+|.
T Consensus 375 LVMPPKP~da~~~lefYNID 394 (1255)
T KOG0444|consen 375 LVMPPKPNDARKKLEFYNID 394 (1255)
T ss_pred ccCCCCcchhhhcceeeecc
Confidence 98777654455667666653
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.77 E-value=1.1e-20 Score=176.96 Aligned_cols=326 Identities=21% Similarity=0.263 Sum_probs=211.1
Q ss_pred cCCCCCCcccceEEEeecccccccCCCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcccCCCCCC
Q 044595 173 EAPDVTGWEKARRLSLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSL 252 (558)
Q Consensus 173 ~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L 252 (558)
-.+++..+.++..|+++.|++..+|+|++|..|..|.+..|.+..+|....+++.+|.+||+++|+++++|..++.|.+|
T Consensus 198 lP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL 277 (565)
T KOG0472|consen 198 LPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSL 277 (565)
T ss_pred CChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhh
Confidence 34567778889999999999999999999999999999999999999998999999999999999999999999999999
Q ss_pred CeEeccCCCCCCcchhhhcCCCCcEEeccCCCCCCcCchhhhcCCCC--CcEEEee-ccCCCcccccccCCcccCCcchh
Q 044595 253 QHLDLSESDIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSR--LHVLRMF-GAGHNAFDEASKDSSLFGGGEFI 329 (558)
Q Consensus 253 ~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~--L~~L~l~-~~~~~~~~~~~~~~~~~~~~~~~ 329 (558)
.+||+++|.++.+|.++|++ +|+.|.+.|| .+.++..+++.+-+. |++|+-. .+.+....... ....+......
T Consensus 278 ~rLDlSNN~is~Lp~sLgnl-hL~~L~leGN-PlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~-~e~~~t~~~~~ 354 (565)
T KOG0472|consen 278 ERLDLSNNDISSLPYSLGNL-HLKFLALEGN-PLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGG-TETAMTLPSES 354 (565)
T ss_pred hhhcccCCccccCCcccccc-eeeehhhcCC-chHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccc-ccccCCCCCCc
Confidence 99999999999999999999 9999999998 677777665543221 3333221 01111000000 00000001122
Q ss_pred HHHhccCCCcceEEEEEccchhHHHHhccccccccccceeeeeccCCCcccccchhhhhhhhhhhhccccccceeEeccC
Q 044595 330 VEELLGLKSLEVISFTLRSSHGLQMILSSDQLRSCTRALSFQCFNDSTSLEVSALADLKQLKMLRIARSEILEELKMDCA 409 (558)
Q Consensus 330 ~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~ 409 (558)
......+.+.+.|+++....+.++.-.-...-..-....+++... +..++- .+..+..+.+.-+.....+..++....
T Consensus 355 ~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNq-L~elPk-~L~~lkelvT~l~lsnn~isfv~~~l~ 432 (565)
T KOG0472|consen 355 FPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQ-LCELPK-RLVELKELVTDLVLSNNKISFVPLELS 432 (565)
T ss_pred ccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccch-Hhhhhh-hhHHHHHHHHHHHhhcCccccchHHHH
Confidence 333445566777777766655443221111111123444444422 122221 233344444444434434433333222
Q ss_pred CcccccccccccEEEEcCCCCCCCch-hhhccCCCceEEEecCchhHHHhhc-----------CccCCcccccc-cCCCC
Q 044595 410 GEVRQFVFHSLNKVEIYGCSKLKDLT-FLVFAPNLKSIKVTGSHAMEAIISV-----------GKFAEVPEVMA-NLNPF 476 (558)
Q Consensus 410 ~~~~~~~~~~L~~L~L~~~~~l~~l~-~l~~l~~L~~L~l~~c~~l~~~~~~-----------~~~~~~~~~~~-~~~~~ 476 (558)
.+++|+.|+++++ -+.++| ..+++..|+.|+|+.+.. ..+|.. ..-..+..+.. .+.++
T Consensus 433 ------~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~NrF-r~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm 504 (565)
T KOG0472|consen 433 ------QLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFNRF-RMLPECLYELQTLETLLASNNQIGSVDPSGLKNM 504 (565)
T ss_pred ------hhhcceeeecccc-hhhhcchhhhhhhhhheeccccccc-ccchHHHhhHHHHHHHHhccccccccChHHhhhh
Confidence 2778888888887 566665 367777788888887642 222110 00001112222 36788
Q ss_pred cccceeeccCcccccccccCCCCCCCcceEeeecCC
Q 044595 477 AKLQNLEVIGAINLKSIYWKPLRFPHLKTMSFFHCN 512 (558)
Q Consensus 477 ~~L~~L~l~~c~~L~~~~~~~~~l~~L~~L~i~~C~ 512 (558)
.+|.+|++.+ ..+..+|...++|.+|++|++.+-|
T Consensus 505 ~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 505 RNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred hhcceeccCC-CchhhCChhhccccceeEEEecCCc
Confidence 9999999987 6788999999999999999999864
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.76 E-value=8.4e-20 Score=178.61 Aligned_cols=300 Identities=21% Similarity=0.293 Sum_probs=148.5
Q ss_pred ceEEEeecccccccC--CCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCccc-CcccCCCCCCCeEeccC
Q 044595 183 ARRLSLMHNQITNLS--EIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSL-PLGISKLVSLQHLDLSE 259 (558)
Q Consensus 183 lr~L~l~~~~~~~l~--~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~ 259 (558)
+..|++..|.+..+. .+..++.||+|+++.|.+..++...|..-.++++|+|++|.|+.+ -..|..+.+|.+|.|++
T Consensus 127 l~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr 206 (873)
T KOG4194|consen 127 LEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR 206 (873)
T ss_pred eeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeeccc
Confidence 455555555544442 234445555555555555554444444444555555555555544 22344444555555555
Q ss_pred CCCCCcchh-hhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhccCCC
Q 044595 260 SDIEELPGE-LKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGLKS 338 (558)
Q Consensus 260 ~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~ 338 (558)
|+++.+|.- +.+|++|+.|++..| .+..+--..+..|++|+.|.+..+....... ..+-.+.+
T Consensus 207 NrittLp~r~Fk~L~~L~~LdLnrN-~irive~ltFqgL~Sl~nlklqrN~I~kL~D---------------G~Fy~l~k 270 (873)
T KOG4194|consen 207 NRITTLPQRSFKRLPKLESLDLNRN-RIRIVEGLTFQGLPSLQNLKLQRNDISKLDD---------------GAFYGLEK 270 (873)
T ss_pred CcccccCHHHhhhcchhhhhhcccc-ceeeehhhhhcCchhhhhhhhhhcCcccccC---------------cceeeecc
Confidence 555555433 333555555555444 2222222224445555555554443322111 11223455
Q ss_pred cceEEEEEccchhHH-HHhccccccccccceeeeeccCCCcccccchhhhhhhhhhhhccccccceeEeccCCccccccc
Q 044595 339 LEVISFTLRSSHGLQ-MILSSDQLRSCTRALSFQCFNDSTSLEVSALADLKQLKMLRIARSEILEELKMDCAGEVRQFVF 417 (558)
Q Consensus 339 L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~ 417 (558)
+++|++..++..... .|.-... .|+.|+++. +.+......+++.+++|+.|+++.+ .+..++...... +
T Consensus 271 me~l~L~~N~l~~vn~g~lfgLt---~L~~L~lS~-NaI~rih~d~WsftqkL~~LdLs~N-~i~~l~~~sf~~-----L 340 (873)
T KOG4194|consen 271 MEHLNLETNRLQAVNEGWLFGLT---SLEQLDLSY-NAIQRIHIDSWSFTQKLKELDLSSN-RITRLDEGSFRV-----L 340 (873)
T ss_pred cceeecccchhhhhhcccccccc---hhhhhccch-hhhheeecchhhhcccceeEecccc-ccccCChhHHHH-----H
Confidence 555555554443321 1111111 445555543 2223333344555566666666554 444444433332 5
Q ss_pred ccccEEEEcCCCCCCCch--hhhccCCCceEEEecCchhHHHhhcCccCCcccccccCCCCcccceeeccCccccccccc
Q 044595 418 HSLNKVEIYGCSKLKDLT--FLVFAPNLKSIKVTGSHAMEAIISVGKFAEVPEVMANLNPFAKLQNLEVIGAINLKSIYW 495 (558)
Q Consensus 418 ~~L~~L~L~~~~~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~ 495 (558)
..|+.|.|+.+ .+..+. .+..+.+|+.|+|+++..--.+ ++-.....++++|++|++.+ .+++.++.
T Consensus 341 ~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N~ls~~I---------EDaa~~f~gl~~LrkL~l~g-Nqlk~I~k 409 (873)
T KOG4194|consen 341 SQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSNELSWCI---------EDAAVAFNGLPSLRKLRLTG-NQLKSIPK 409 (873)
T ss_pred HHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCCeEEEEE---------ecchhhhccchhhhheeecC-ceeeecch
Confidence 56666666665 444432 2445667777777765431111 11223456788999999888 67888875
Q ss_pred C-CCCCCCcceEeeecCCCCcCCCCC
Q 044595 496 K-PLRFPHLKTMSFFHCNKLKMLPLD 520 (558)
Q Consensus 496 ~-~~~l~~L~~L~i~~C~~L~~lP~~ 520 (558)
. ...+++|++|++.+. -+.++-..
T Consensus 410 rAfsgl~~LE~LdL~~N-aiaSIq~n 434 (873)
T KOG4194|consen 410 RAFSGLEALEHLDLGDN-AIASIQPN 434 (873)
T ss_pred hhhccCcccceecCCCC-cceeeccc
Confidence 2 346788888888774 45555333
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.76 E-value=5.5e-19 Score=172.96 Aligned_cols=315 Identities=17% Similarity=0.253 Sum_probs=210.6
Q ss_pred CCCcccceEEEeecccccccCCCCC-CCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCc-ccCCCCCCCe
Q 044595 177 VTGWEKARRLSLMHNQITNLSEIPT-CPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPL-GISKLVSLQH 254 (558)
Q Consensus 177 ~~~~~~lr~L~l~~~~~~~l~~~~~-~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~ 254 (558)
+..+++++.+++..|.++.+|.+.. ..++..|++..|.+.++..+-++.++.||.|||+.|.|+.+|. ++..=.++++
T Consensus 98 f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~ 177 (873)
T KOG4194|consen 98 FYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKK 177 (873)
T ss_pred HhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceE
Confidence 3455677777777777777776544 3447777777777777766667777788888888887776654 3555567888
Q ss_pred EeccCCCCCCcc-hhhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHh
Q 044595 255 LDLSESDIEELP-GELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEEL 333 (558)
Q Consensus 255 L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L 333 (558)
|+|++|.|+.+- ..+..+.+|.+|.++.| .++.+|...+.+|+.|+.|++..+..... .--.+
T Consensus 178 L~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~iriv---------------e~ltF 241 (873)
T KOG4194|consen 178 LNLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNRIRIV---------------EGLTF 241 (873)
T ss_pred EeeccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhhhhccccceeee---------------hhhhh
Confidence 888888777663 34677778888888876 67788877777788888888876654311 12234
Q ss_pred ccCCCcceEEEEEccchhHHHHhccccccccccceeeeeccCCCcccccchhhhhhhhhhhhccccccceeEeccCCccc
Q 044595 334 LGLKSLEVISFTLRSSHGLQMILSSDQLRSCTRALSFQCFNDSTSLEVSALADLKQLKMLRIARSEILEELKMDCAGEVR 413 (558)
Q Consensus 334 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~ 413 (558)
+.|++|+.|.+..++...+.+-. .-.+..++.|++.. +.+..+.-..+-+++.|+.|+++.+ .++.+....-.
T Consensus 242 qgL~Sl~nlklqrN~I~kL~DG~--Fy~l~kme~l~L~~-N~l~~vn~g~lfgLt~L~~L~lS~N-aI~rih~d~Ws--- 314 (873)
T KOG4194|consen 242 QGLPSLQNLKLQRNDISKLDDGA--FYGLEKMEHLNLET-NRLQAVNEGWLFGLTSLEQLDLSYN-AIQRIHIDSWS--- 314 (873)
T ss_pred cCchhhhhhhhhhcCcccccCcc--eeeecccceeeccc-chhhhhhcccccccchhhhhccchh-hhheeecchhh---
Confidence 56666666666655554433211 11122566666654 2333333345667899999999877 66666554222
Q ss_pred ccccccccEEEEcCCCCCCCch--hhhccCCCceEEEecCchhHHHhhcCccCCcccccccCCCCcccceeeccCccccc
Q 044595 414 QFVFHSLNKVEIYGCSKLKDLT--FLVFAPNLKSIKVTGSHAMEAIISVGKFAEVPEVMANLNPFAKLQNLEVIGAINLK 491 (558)
Q Consensus 414 ~~~~~~L~~L~L~~~~~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~ 491 (558)
..++|+.|+|+.+ +++.++ .+..+..|+.|.|+++.. +.+-+ ..+.++.+|++|+|++. .+.
T Consensus 315 --ftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~Nsi-~~l~e-----------~af~~lssL~~LdLr~N-~ls 378 (873)
T KOG4194|consen 315 --FTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSHNSI-DHLAE-----------GAFVGLSSLHKLDLRSN-ELS 378 (873)
T ss_pred --hcccceeEecccc-ccccCChhHHHHHHHhhhhcccccch-HHHHh-----------hHHHHhhhhhhhcCcCC-eEE
Confidence 3799999999998 787765 477889999999998764 33322 34567899999999873 232
Q ss_pred ccc----cCCCCCCCcceEeeecCCCCcCCCCCCCcccccceeE
Q 044595 492 SIY----WKPLRFPHLKTMSFFHCNKLKMLPLDSNSAREHSIVI 531 (558)
Q Consensus 492 ~~~----~~~~~l~~L~~L~i~~C~~L~~lP~~~~~~~~~~~~i 531 (558)
..- .....+++|+.|.+.+ .+|+++|....+....+..+
T Consensus 379 ~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~L 421 (873)
T KOG4194|consen 379 WCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHL 421 (873)
T ss_pred EEEecchhhhccchhhhheeecC-ceeeecchhhhccCccccee
Confidence 211 1223589999999988 69999998766543333333
No 11
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.70 E-value=2.8e-18 Score=167.03 Aligned_cols=107 Identities=37% Similarity=0.736 Sum_probs=91.5
Q ss_pred ccHHHHHHHHHHHcCCchhHHHHHHHHHcCCCChhhHHHHHHHHhccCCCCCCCccchhhhHHhcccCCCCcchhhhhcc
Q 044595 2 PDILQLAQAAARECDGLPLALITIGRAMACKKTPDEWIYDIEVLRTSSSQFPGLGNEVYPLLKFSYDRLPSDTIKSCLLY 81 (558)
Q Consensus 2 ~~l~~i~~~iv~~c~GlPLai~~ig~~L~~~~~~~~W~~~~~~l~~~~~~~~~~~~~i~~~L~~SY~~L~~~~lk~cfl~ 81 (558)
+.+.+++++|+++|+|+||||+++|+.|+.+.+.++|+.+++++........+....+..++.+||+.||++ +|.||+|
T Consensus 179 ~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~f~~ 257 (287)
T PF00931_consen 179 EDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPDE-LRRCFLY 257 (287)
T ss_dssp TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHTC-CHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceechhcCCcc-HHHHHhh
Confidence 456789999999999999999999999976567899999999988775544444568999999999999995 9999999
Q ss_pred cccCCCCCccCHHHHHHHHHHcCccccC
Q 044595 82 CSLYPEDYCISKEKLIDCWIGEGFLTER 109 (558)
Q Consensus 82 ~~~fp~~~~i~~~~Li~~W~aeg~i~~~ 109 (558)
||+||+++.|+++.|+++|+|||||...
T Consensus 258 L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 258 LSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp GGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred CcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 9999999999999999999999999764
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.62 E-value=3.3e-18 Score=160.46 Aligned_cols=259 Identities=23% Similarity=0.345 Sum_probs=130.4
Q ss_pred EEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcccCCCCCCCeEeccCCCCCCcchhhhcCCCCcEEeccCCCCC
Q 044595 207 TFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHLDLSESDIEELPGELKALVNLKCLDLEYTGNL 286 (558)
Q Consensus 207 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l 286 (558)
.++++.|.+..+.++ ..++..|.+|++.++.+..+|.+|+.+..++.++.+++++.++|..++.+.+|+.++.+++ .+
T Consensus 49 ~lils~N~l~~l~~d-l~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n-~~ 126 (565)
T KOG0472|consen 49 KLILSHNDLEVLRED-LKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN-EL 126 (565)
T ss_pred hhhhccCchhhccHh-hhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc-ce
Confidence 344444444444443 4445555555555555555555555555555555555555555555555555555555544 34
Q ss_pred CcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhccCCCcceEEEEEccchhHHHHhcccccccccc
Q 044595 287 ITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGLKSLEVISFTLRSSHGLQMILSSDQLRSCTR 366 (558)
Q Consensus 287 ~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 366 (558)
..+|++ ++.+-.|..|+...+.... .++.+..+.+|..+.+..+..
T Consensus 127 ~el~~~-i~~~~~l~dl~~~~N~i~s----------------lp~~~~~~~~l~~l~~~~n~l----------------- 172 (565)
T KOG0472|consen 127 KELPDS-IGRLLDLEDLDATNNQISS----------------LPEDMVNLSKLSKLDLEGNKL----------------- 172 (565)
T ss_pred eecCch-HHHHhhhhhhhcccccccc----------------CchHHHHHHHHHHhhccccch-----------------
Confidence 444444 4444444444443332221 222222222222222221111
Q ss_pred ceeeeeccCCCcccccchhhhhhhhhhhhccccccceeEeccCCcccccccccccEEEEcCCCCCCCchhhhccCCCceE
Q 044595 367 ALSFQCFNDSTSLEVSALADLKQLKMLRIARSEILEELKMDCAGEVRQFVFHSLNKVEIYGCSKLKDLTFLVFAPNLKSI 446 (558)
Q Consensus 367 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~l~~l~~L~~L 446 (558)
..++.. .-+++.|++|+...+ .++.+|++..+ +.+|..|++..+ ++..+|.++++..|+.|
T Consensus 173 ----------~~l~~~-~i~m~~L~~ld~~~N-~L~tlP~~lg~------l~~L~~LyL~~N-ki~~lPef~gcs~L~El 233 (565)
T KOG0472|consen 173 ----------KALPEN-HIAMKRLKHLDCNSN-LLETLPPELGG------LESLELLYLRRN-KIRFLPEFPGCSLLKEL 233 (565)
T ss_pred ----------hhCCHH-HHHHHHHHhcccchh-hhhcCChhhcc------hhhhHHHHhhhc-ccccCCCCCccHHHHHH
Confidence 111111 122555555555443 45555555544 566666666666 56666666666666666
Q ss_pred EEecCchhHHHhhcCccCCcccccccCCCCcccceeeccCcccccccccCCCCCCCcceEeeecCCCCcCCCCCCCcccc
Q 044595 447 KVTGSHAMEAIISVGKFAEVPEVMANLNPFAKLQNLEVIGAINLKSIYWKPLRFPHLKTMSFFHCNKLKMLPLDSNSARE 526 (558)
Q Consensus 447 ~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~l~~L~~L~i~~C~~L~~lP~~~~~~~~ 526 (558)
.+..+. ++.++. .....+++|..|++++ .++++.|.+..-+.+|++|++++ ..+.++|-......+
T Consensus 234 h~g~N~-i~~lpa-----------e~~~~L~~l~vLDLRd-Nklke~Pde~clLrsL~rLDlSN-N~is~Lp~sLgnlhL 299 (565)
T KOG0472|consen 234 HVGENQ-IEMLPA-----------EHLKHLNSLLVLDLRD-NKLKEVPDEICLLRSLERLDLSN-NDISSLPYSLGNLHL 299 (565)
T ss_pred HhcccH-HHhhHH-----------HHhcccccceeeeccc-cccccCchHHHHhhhhhhhcccC-CccccCCccccccee
Confidence 665443 233332 2334666777777766 56777776666667777777766 466667665555555
Q ss_pred cceeEecc
Q 044595 527 HSIVIRGD 534 (558)
Q Consensus 527 ~~~~i~~~ 534 (558)
....++|.
T Consensus 300 ~~L~leGN 307 (565)
T KOG0472|consen 300 KFLALEGN 307 (565)
T ss_pred eehhhcCC
Confidence 55555665
No 13
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.58 E-value=2.5e-15 Score=162.99 Aligned_cols=311 Identities=22% Similarity=0.289 Sum_probs=208.8
Q ss_pred CCCCcccceEEEeeccc--ccccCC--CCCCCCceEEEeecCC-ccccCchhhhCCCCCcEEEcCCCCCcccCcccCCCC
Q 044595 176 DVTGWEKARRLSLMHNQ--ITNLSE--IPTCPHLLTFFLNKNR-FQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLV 250 (558)
Q Consensus 176 ~~~~~~~lr~L~l~~~~--~~~l~~--~~~~~~Lr~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~ 250 (558)
.-...++++.|-+..|. +..++. +..++.||+|++++|. +..+|.. ++.+-+||||+++++.+..+|.++++|.
T Consensus 540 ~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t~I~~LP~~l~~Lk 618 (889)
T KOG4658|consen 540 GSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDTGISHLPSGLGNLK 618 (889)
T ss_pred CCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccCCCccccchHHHHHH
Confidence 33344579999999886 566655 7889999999999654 5677777 8999999999999999999999999999
Q ss_pred CCCeEeccCC-CCCCcchhhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchh
Q 044595 251 SLQHLDLSES-DIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFI 329 (558)
Q Consensus 251 ~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 329 (558)
.|.+|++..+ .+..+|.....|++|++|.+.... .......++.+.+|++|....+.... ...
T Consensus 619 ~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~--~~~~~~~l~el~~Le~L~~ls~~~~s--------------~~~ 682 (889)
T KOG4658|consen 619 KLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA--LSNDKLLLKELENLEHLENLSITISS--------------VLL 682 (889)
T ss_pred hhheeccccccccccccchhhhcccccEEEeeccc--cccchhhHHhhhcccchhhheeecch--------------hHh
Confidence 9999999998 555667667779999999998763 22222235666677777666554432 133
Q ss_pred HHHhccCCCcceEEEEEc-cchhHHHHhccccccccccceeeeeccCCCccc--cc--chh-hhhhhhhhhhccccccce
Q 044595 330 VEELLGLKSLEVISFTLR-SSHGLQMILSSDQLRSCTRALSFQCFNDSTSLE--VS--ALA-DLKQLKMLRIARSEILEE 403 (558)
Q Consensus 330 ~~~L~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~--~l~-~l~~L~~L~l~~~~~l~~ 403 (558)
.+.+..+..|+.+..... ................+|+.|.+.+|...+... .. ... .++++..+.+.+|.....
T Consensus 683 ~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~ 762 (889)
T KOG4658|consen 683 LEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRD 762 (889)
T ss_pred HhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccc
Confidence 444555555553332222 112223333333344578888888877653221 00 111 256788888888877766
Q ss_pred eEeccCCcccccccccccEEEEcCCCCCCCc-hhhhccCCCceEEEecCchhHHHhhcCccCCcccccccCCCCccccee
Q 044595 404 LKMDCAGEVRQFVFHSLNKVEIYGCSKLKDL-TFLVFAPNLKSIKVTGSHAMEAIISVGKFAEVPEVMANLNPFAKLQNL 482 (558)
Q Consensus 404 l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l-~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L 482 (558)
+.... ..++|+.|++..|+.++++ |....+..++.+.+..+..-.. ......++|+++..+
T Consensus 763 l~~~~-------f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l-----------~~~~~l~~l~~i~~~ 824 (889)
T KOG4658|consen 763 LTWLL-------FAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGL-----------RMLCSLGGLPQLYWL 824 (889)
T ss_pred cchhh-------ccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccc-----------eeeecCCCCceeEec
Confidence 54332 2789999999999888884 5566666677655544332111 011345666666666
Q ss_pred eccCcccccccccCC----CCCCCcceEeeecC-CCCcCCCCCCC
Q 044595 483 EVIGAINLKSIYWKP----LRFPHLKTMSFFHC-NKLKMLPLDSN 522 (558)
Q Consensus 483 ~l~~c~~L~~~~~~~----~~l~~L~~L~i~~C-~~L~~lP~~~~ 522 (558)
.+... .+..|.... ..+|.+.++.|.+| +++..+|....
T Consensus 825 ~l~~~-~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~ 868 (889)
T KOG4658|consen 825 PLSFL-KLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGEW 868 (889)
T ss_pred ccCcc-chhheehhcCcccccCccccccceeccccceeecCCccc
Confidence 66653 366665544 56888999999997 89999998633
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.57 E-value=1.5e-16 Score=164.11 Aligned_cols=234 Identities=21% Similarity=0.266 Sum_probs=123.7
Q ss_pred CCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCC-c------ccCCcchhHHHhccCCCcceEEEEE
Q 044595 274 NLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDS-S------LFGGGEFIVEELLGLKSLEVISFTL 346 (558)
Q Consensus 274 ~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~-~------~~~~~~~~~~~L~~l~~L~~L~l~~ 346 (558)
+|++++++.+ .+..+| +.++.+.+|+.++...+............ . ....-...+..+.+++.|++|++..
T Consensus 242 nl~~~dis~n-~l~~lp-~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~ 319 (1081)
T KOG0618|consen 242 NLQYLDISHN-NLSNLP-EWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQS 319 (1081)
T ss_pred cceeeecchh-hhhcch-HHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehh
Confidence 4444444444 455667 45777777777776655432211100000 0 0000223455566778888888887
Q ss_pred ccchhHHHHhccccccccccceeeeeccCCCcccccchhhhhhhhhhhhccccccceeEeccCCcccccccccccEEEEc
Q 044595 347 RSSHGLQMILSSDQLRSCTRALSFQCFNDSTSLEVSALADLKQLKMLRIARSEILEELKMDCAGEVRQFVFHSLNKVEIY 426 (558)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~ 426 (558)
+....++...-.. ....++.+..+. ..+...+-..=..++.|+.|.+.++.-.+...+.... +.+|+.|+|+
T Consensus 320 N~L~~lp~~~l~v-~~~~l~~ln~s~-n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~------~~hLKVLhLs 391 (1081)
T KOG0618|consen 320 NNLPSLPDNFLAV-LNASLNTLNVSS-NKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVN------FKHLKVLHLS 391 (1081)
T ss_pred ccccccchHHHhh-hhHHHHHHhhhh-ccccccccccchhhHHHHHHHHhcCcccccchhhhcc------ccceeeeeec
Confidence 7776665422111 000122222221 1111111001123578888888887554444443333 7889999998
Q ss_pred CCCCCCCchh--hhccCCCceEEEecCchhHHHhhcCccCCcccccccCCCCcccceeeccCcccccccccCCCCCCCcc
Q 044595 427 GCSKLKDLTF--LVFAPNLKSIKVTGSHAMEAIISVGKFAEVPEVMANLNPFAKLQNLEVIGAINLKSIYWKPLRFPHLK 504 (558)
Q Consensus 427 ~~~~l~~l~~--l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~l~~L~ 504 (558)
.+ .+.++|. +.+++.|+.|.|+++.. +.+++ .+..+++|++|...+ .++..+| +...+++|+
T Consensus 392 yN-rL~~fpas~~~kle~LeeL~LSGNkL-~~Lp~------------tva~~~~L~tL~ahs-N~l~~fP-e~~~l~qL~ 455 (1081)
T KOG0618|consen 392 YN-RLNSFPASKLRKLEELEELNLSGNKL-TTLPD------------TVANLGRLHTLRAHS-NQLLSFP-ELAQLPQLK 455 (1081)
T ss_pred cc-ccccCCHHHHhchHHhHHHhcccchh-hhhhH------------HHHhhhhhHHHhhcC-Cceeech-hhhhcCcce
Confidence 88 7887764 67888899999998754 33332 344555666665544 4455555 344556666
Q ss_pred eEeeecCCCCcC--CCCCCCcccccceeEecc
Q 044595 505 TMSFFHCNKLKM--LPLDSNSAREHSIVIRGD 534 (558)
Q Consensus 505 ~L~i~~C~~L~~--lP~~~~~~~~~~~~i~~~ 534 (558)
.+++ .|.+|.. +|.....+.++...+.|.
T Consensus 456 ~lDl-S~N~L~~~~l~~~~p~p~LkyLdlSGN 486 (1081)
T KOG0618|consen 456 VLDL-SCNNLSEVTLPEALPSPNLKYLDLSGN 486 (1081)
T ss_pred EEec-ccchhhhhhhhhhCCCcccceeeccCC
Confidence 6666 4455553 343333344444444443
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.52 E-value=2.5e-16 Score=131.06 Aligned_cols=163 Identities=23% Similarity=0.399 Sum_probs=142.2
Q ss_pred CCCCCCcccceEEEeecccccccC-CCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcccCCCCCC
Q 044595 174 APDVTGWEKARRLSLMHNQITNLS-EIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSL 252 (558)
Q Consensus 174 ~~~~~~~~~lr~L~l~~~~~~~l~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L 252 (558)
.+.+..+.++.+|.++.|.++.++ .+..+.+|++|.+++|+++.+|.+ ++.++.||.|++..|.+..+|.++|.++-|
T Consensus 26 ~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmnrl~~lprgfgs~p~l 104 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMNRLNILPRGFGSFPAL 104 (264)
T ss_pred cccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchhhhhcCccccCCCchh
Confidence 344555678888999999998874 688999999999999999999998 788999999999999999999999999999
Q ss_pred CeEeccCCCCC--CcchhhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhH
Q 044595 253 QHLDLSESDIE--ELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIV 330 (558)
Q Consensus 253 ~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (558)
+.||+..|++. .+|..+..|+.|+.|.++.| ....+|.+ ++++++||.|.+.++... ..+
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~d-vg~lt~lqil~lrdndll----------------~lp 166 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPD-VGKLTNLQILSLRDNDLL----------------SLP 166 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChh-hhhhcceeEEeeccCchh----------------hCc
Confidence 99999999776 78999999999999999987 77889988 899999999999876543 478
Q ss_pred HHhccCCCcceEEEEEccchhHHHH
Q 044595 331 EELLGLKSLEVISFTLRSSHGLQMI 355 (558)
Q Consensus 331 ~~L~~l~~L~~L~l~~~~~~~~~~~ 355 (558)
.+++.+..|++|+|.+++...++.-
T Consensus 167 keig~lt~lrelhiqgnrl~vlppe 191 (264)
T KOG0617|consen 167 KEIGDLTRLRELHIQGNRLTVLPPE 191 (264)
T ss_pred HHHHHHHHHHHHhcccceeeecChh
Confidence 8999999999999998887655543
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.50 E-value=1.9e-13 Score=145.46 Aligned_cols=74 Identities=19% Similarity=0.226 Sum_probs=38.5
Q ss_pred ccccEEEEcCCCCCCCchhhhccCCCceEEEecCchhHHHhhcCccCCcccccccCCCCcccceeeccCcccccccccCC
Q 044595 418 HSLNKVEIYGCSKLKDLTFLVFAPNLKSIKVTGSHAMEAIISVGKFAEVPEVMANLNPFAKLQNLEVIGAINLKSIYWKP 497 (558)
Q Consensus 418 ~~L~~L~L~~~~~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~ 497 (558)
.+|+.|+++++ .++.+|.. .++|+.|++++|.. +.++. .+.+|+.|++++ .++..+|...
T Consensus 382 ~~L~~LdLs~N-~Lt~LP~l--~s~L~~LdLS~N~L-ssIP~---------------l~~~L~~L~Ls~-NqLt~LP~sl 441 (788)
T PRK15387 382 SGLKELIVSGN-RLTSLPVL--PSELKELMVSGNRL-TSLPM---------------LPSGLLSLSVYR-NQLTRLPESL 441 (788)
T ss_pred cccceEEecCC-cccCCCCc--ccCCCEEEccCCcC-CCCCc---------------chhhhhhhhhcc-CcccccChHH
Confidence 45666666665 45554432 34566666666542 21211 123455566655 3455555555
Q ss_pred CCCCCcceEeeecC
Q 044595 498 LRFPHLKTMSFFHC 511 (558)
Q Consensus 498 ~~l~~L~~L~i~~C 511 (558)
..+++|+.|+++++
T Consensus 442 ~~L~~L~~LdLs~N 455 (788)
T PRK15387 442 IHLSSETTVNLEGN 455 (788)
T ss_pred hhccCCCeEECCCC
Confidence 55666666666554
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.46 E-value=3.9e-15 Score=153.84 Aligned_cols=285 Identities=22% Similarity=0.328 Sum_probs=181.2
Q ss_pred ccceEEEeecccccccCCCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcccCCCCCCCeEeccCC
Q 044595 181 EKARRLSLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHLDLSES 260 (558)
Q Consensus 181 ~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~ 260 (558)
.++++|..+.|.+..+..-+.-.+|++++++.+.+..+| +.+..+.+|..++..+|.++.+|..+...++|++|++..|
T Consensus 219 ~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~n 297 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYN 297 (1081)
T ss_pred cchheeeeccCcceeeccccccccceeeecchhhhhcch-HHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhh
Confidence 456666666666664443445567888888888888888 5578888888888888888888888888888888888888
Q ss_pred CCCCcchhhhcCCCCcEEeccCCCCCCcCchhhhcCCCC-CcEEEeeccCCCcccccccCCcccCCcchhHHHhccCCCc
Q 044595 261 DIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSR-LHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGLKSL 339 (558)
Q Consensus 261 ~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L 339 (558)
.+..+|+....+++|++|++..| ++..+|+..+..+.. |+.|+.+........ .+ .. ..+..|
T Consensus 298 el~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp------~~---~e------~~~~~L 361 (1081)
T KOG0618|consen 298 ELEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLP------SY---EE------NNHAAL 361 (1081)
T ss_pred hhhhCCCcccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhccccccc------cc---cc------hhhHHH
Confidence 88888888888888888888877 777888765444433 555544433222110 00 00 011122
Q ss_pred ceEEEEEccch--hHHHHhccccccccccceeeeeccCCCcccccchhhhhhhhhhhhccccccceeEeccCCccccccc
Q 044595 340 EVISFTLRSSH--GLQMILSSDQLRSCTRALSFQCFNDSTSLEVSALADLKQLKMLRIARSEILEELKMDCAGEVRQFVF 417 (558)
Q Consensus 340 ~~L~l~~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~ 417 (558)
+.|.+..+... .++.+... .+|+.|++++ +.+..++.+.+.+++.|++|.++|+ .++.++..... +
T Consensus 362 q~LylanN~Ltd~c~p~l~~~----~hLKVLhLsy-NrL~~fpas~~~kle~LeeL~LSGN-kL~~Lp~tva~------~ 429 (1081)
T KOG0618|consen 362 QELYLANNHLTDSCFPVLVNF----KHLKVLHLSY-NRLNSFPASKLRKLEELEELNLSGN-KLTTLPDTVAN------L 429 (1081)
T ss_pred HHHHHhcCcccccchhhhccc----cceeeeeecc-cccccCCHHHHhchHHhHHHhcccc-hhhhhhHHHHh------h
Confidence 22333222221 11111111 1455555554 3334444445778888999999988 77777765544 7
Q ss_pred ccccEEEEcCCCCCCCchhhhccCCCceEEEecCchhHHHhhcCccCCcccccccCCCCcccceeeccCcccccccccCC
Q 044595 418 HSLNKVEIYGCSKLKDLTFLVFAPNLKSIKVTGSHAMEAIISVGKFAEVPEVMANLNPFAKLQNLEVIGAINLKSIYWKP 497 (558)
Q Consensus 418 ~~L~~L~L~~~~~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~ 497 (558)
..|+.|...++ .+..+|.+..++.|+.++++.+. ++++.- +... .-|.|++|+++|..++. .+.
T Consensus 430 ~~L~tL~ahsN-~l~~fPe~~~l~qL~~lDlS~N~-L~~~~l----------~~~~-p~p~LkyLdlSGN~~l~---~d~ 493 (1081)
T KOG0618|consen 430 GRLHTLRAHSN-QLLSFPELAQLPQLKVLDLSCNN-LSEVTL----------PEAL-PSPNLKYLDLSGNTRLV---FDH 493 (1081)
T ss_pred hhhHHHhhcCC-ceeechhhhhcCcceEEecccch-hhhhhh----------hhhC-CCcccceeeccCCcccc---cch
Confidence 88888888777 77778888899999999997654 344321 1111 11899999999877632 233
Q ss_pred CCCCCcceEeeec
Q 044595 498 LRFPHLKTMSFFH 510 (558)
Q Consensus 498 ~~l~~L~~L~i~~ 510 (558)
..++.++.+...+
T Consensus 494 ~~l~~l~~l~~~~ 506 (1081)
T KOG0618|consen 494 KTLKVLKSLSQMD 506 (1081)
T ss_pred hhhHHhhhhhhee
Confidence 4455555555544
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.43 E-value=2.5e-13 Score=145.33 Aligned_cols=118 Identities=24% Similarity=0.399 Sum_probs=91.4
Q ss_pred cceEEEeecccccccCCCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcccCCCCCCCeEeccCCC
Q 044595 182 KARRLSLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHLDLSESD 261 (558)
Q Consensus 182 ~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~ 261 (558)
+...|.+.++.++.+|.. -.+.++.|++++|.+..+|..++ .+|++|++++|.++.+|..+. .+|+.|++++|.
T Consensus 179 ~~~~L~L~~~~LtsLP~~-Ip~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~ 252 (754)
T PRK15370 179 NKTELRLKILGLTTIPAC-IPEQITTLILDNNELKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSINR 252 (754)
T ss_pred CceEEEeCCCCcCcCCcc-cccCCcEEEecCCCCCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcCCc
Confidence 456788888887777651 12578899999999998887643 589999999999998887664 479999999999
Q ss_pred CCCcchhhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCC
Q 044595 262 IEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHN 311 (558)
Q Consensus 262 l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 311 (558)
+..+|..+. .+|+.|++++| .+..+|.. + .++|++|+++++...
T Consensus 253 L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~-l--~~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 253 ITELPERLP--SALQSLDLFHN-KISCLPEN-L--PEELRYLSVYDNSIR 296 (754)
T ss_pred cCcCChhHh--CCCCEEECcCC-ccCccccc-c--CCCCcEEECCCCccc
Confidence 988887765 58999999876 67788865 3 257889988877543
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.42 E-value=4.6e-13 Score=143.34 Aligned_cols=224 Identities=23% Similarity=0.259 Sum_probs=148.1
Q ss_pred ccceEEEeecccccccCCCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcccCCCCCCCeEeccCC
Q 044595 181 EKARRLSLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHLDLSES 260 (558)
Q Consensus 181 ~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~ 260 (558)
+.++.|++++|.+..++.. ..++|++|++++|.+..+|..+ ..+|+.|++++|.++.+|..+. .+|++|++++|
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~-l~~nL~~L~Ls~N~LtsLP~~l---~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N 272 (754)
T PRK15370 199 EQITTLILDNNELKSLPEN-LQGNIKTLYANSNQLTSIPATL---PDTIQEMELSINRITELPERLP--SALQSLDLFHN 272 (754)
T ss_pred cCCcEEEecCCCCCcCChh-hccCCCEEECCCCccccCChhh---hccccEEECcCCccCcCChhHh--CCCCEEECcCC
Confidence 5799999999999988753 2368999999999999998764 3579999999999999998775 58999999999
Q ss_pred CCCCcchhhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhccCCCcc
Q 044595 261 DIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGLKSLE 340 (558)
Q Consensus 261 ~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~ 340 (558)
++..+|..+. .+|++|++++| .+..+|.. + .++|+.|++.++....+ +..+ .++|+
T Consensus 273 ~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~-l--p~sL~~L~Ls~N~Lt~L----------------P~~l--~~sL~ 328 (754)
T PRK15370 273 KISCLPENLP--EELRYLSVYDN-SIRTLPAH-L--PSGITHLNVQSNSLTAL----------------PETL--PPGLK 328 (754)
T ss_pred ccCccccccC--CCCcEEECCCC-ccccCccc-c--hhhHHHHHhcCCccccC----------------Cccc--cccce
Confidence 9999997664 58999999998 78888865 2 24688888877654321 1111 24677
Q ss_pred eEEEEEccchhHHHHhccccccccccceeeeeccCCCcccccchhhhhhhhhhhhccccccceeEeccCCcccccccccc
Q 044595 341 VISFTLRSSHGLQMILSSDQLRSCTRALSFQCFNDSTSLEVSALADLKQLKMLRIARSEILEELKMDCAGEVRQFVFHSL 420 (558)
Q Consensus 341 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L 420 (558)
.|.+..+....++.. +..+|+.|+++++. +..++. .+ .+.|+.|++++| .+..++... ..+|
T Consensus 329 ~L~Ls~N~Lt~LP~~-----l~~sL~~L~Ls~N~-L~~LP~-~l--p~~L~~LdLs~N-~Lt~LP~~l--------~~sL 390 (754)
T PRK15370 329 TLEAGENALTSLPAS-----LPPELQVLDVSKNQ-ITVLPE-TL--PPTITTLDVSRN-ALTNLPENL--------PAAL 390 (754)
T ss_pred eccccCCccccCChh-----hcCcccEEECCCCC-CCcCCh-hh--cCCcCEEECCCC-cCCCCCHhH--------HHHH
Confidence 777766554443321 12356666666543 222221 11 246666666665 333333221 2356
Q ss_pred cEEEEcCCCCCCCchh-----hhccCCCceEEEecCch
Q 044595 421 NKVEIYGCSKLKDLTF-----LVFAPNLKSIKVTGSHA 453 (558)
Q Consensus 421 ~~L~L~~~~~l~~l~~-----l~~l~~L~~L~l~~c~~ 453 (558)
+.|+++++ ++..+|. .+.++++..|++.+++.
T Consensus 391 ~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 391 QIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred HHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 66666665 4554431 22346666666666554
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.31 E-value=5.3e-14 Score=117.34 Aligned_cols=136 Identities=33% Similarity=0.585 Sum_probs=123.8
Q ss_pred ccCCCCCCcccceEEEeecccccccC-CCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCc--ccCcccCC
Q 044595 172 VEAPDVTGWEKARRLSLMHNQITNLS-EIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLT--SLPLGISK 248 (558)
Q Consensus 172 ~~~~~~~~~~~lr~L~l~~~~~~~l~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~--~lp~~i~~ 248 (558)
...+.+..+.++..|++.+|++.++| .++.+++||.|.+.-|++..+|.. |+.++.|.+||+.+|++. .+|..+..
T Consensus 47 ~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprg-fgs~p~levldltynnl~e~~lpgnff~ 125 (264)
T KOG0617|consen 47 VVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRG-FGSFPALEVLDLTYNNLNENSLPGNFFY 125 (264)
T ss_pred ecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccc-cCCCchhhhhhccccccccccCCcchhH
Confidence 34466777889999999999999986 589999999999999999999988 899999999999999887 78999999
Q ss_pred CCCCCeEeccCCCCCCcchhhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCC
Q 044595 249 LVSLQHLDLSESDIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGH 310 (558)
Q Consensus 249 L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 310 (558)
+..|+-|.++.|.+.-+|..++++++|+.|.++.| .+-.+|.+ ++.++.|+.|++.++..
T Consensus 126 m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn-dll~lpke-ig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 126 MTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN-DLLSLPKE-IGDLTRLRELHIQGNRL 185 (264)
T ss_pred HHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC-chhhCcHH-HHHHHHHHHHhccccee
Confidence 99999999999999999999999999999999998 77889998 89999999999988754
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.28 E-value=1.5e-13 Score=129.27 Aligned_cols=247 Identities=17% Similarity=0.239 Sum_probs=142.4
Q ss_pred CceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCccc-CcccCCCCCCCeEeccC-CCCCCcchh-hhcCCCCcEEec
Q 044595 204 HLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSL-PLGISKLVSLQHLDLSE-SDIEELPGE-LKALVNLKCLDL 280 (558)
Q Consensus 204 ~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~-~~l~~lp~~-i~~l~~L~~L~l 280 (558)
....+.|..|.++.+|+..|+.++.||.|||+.|.|+.+ |..|.+|..|-.|-+.+ |+|+.+|+. ++.|..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 345567777888888888788888888888888888766 77777777777766666 578877765 677777777777
Q ss_pred cCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhccCCCcceEEEEEccc-----------
Q 044595 281 EYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGLKSLEVISFTLRSS----------- 349 (558)
Q Consensus 281 ~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~----------- 349 (558)
.-| .+..++.+.+..|++|..|.+.++....+... .+..+..++++++..+..
T Consensus 148 Nan-~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~---------------tf~~l~~i~tlhlA~np~icdCnL~wla~ 211 (498)
T KOG4237|consen 148 NAN-HINCIRQDALRDLPSLSLLSLYDNKIQSICKG---------------TFQGLAAIKTLHLAQNPFICDCNLPWLAD 211 (498)
T ss_pred Chh-hhcchhHHHHHHhhhcchhcccchhhhhhccc---------------cccchhccchHhhhcCccccccccchhhh
Confidence 665 56667777777777777777776654322111 111112222221111110
Q ss_pred ------------h-----hHH--HH--hccccccccccce---eeeeccCCCcccccchhhhhhhhhhhhccccccceeE
Q 044595 350 ------------H-----GLQ--MI--LSSDQLRSCTRAL---SFQCFNDSTSLEVSALADLKQLKMLRIARSEILEELK 405 (558)
Q Consensus 350 ------------~-----~~~--~~--~~~~~~~~~L~~L---~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~ 405 (558)
. .+. .. .....+..+++.+ -...|......+...+..+++|++|+++++ .++.+.
T Consensus 212 ~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN-~i~~i~ 290 (498)
T KOG4237|consen 212 DLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNN-KITRIE 290 (498)
T ss_pred HHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCC-ccchhh
Confidence 0 000 00 0000011111111 111111112222334677888888888877 666666
Q ss_pred eccCCcccccccccccEEEEcCCCCCCCchh--hhccCCCceEEEecCchhHHHhhcCccCCcccccccCCCCcccceee
Q 044595 406 MDCAGEVRQFVFHSLNKVEIYGCSKLKDLTF--LVFAPNLKSIKVTGSHAMEAIISVGKFAEVPEVMANLNPFAKLQNLE 483 (558)
Q Consensus 406 ~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~--l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 483 (558)
..++.. ...+++|+|.++ ++..+.. +..+..|+.|+|.++..-.-.+ ..+..+.+|.+|.
T Consensus 291 ~~aFe~-----~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~------------~aF~~~~~l~~l~ 352 (498)
T KOG4237|consen 291 DGAFEG-----AAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDNQITTVAP------------GAFQTLFSLSTLN 352 (498)
T ss_pred hhhhcc-----hhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecCCeeEEEec------------ccccccceeeeee
Confidence 666554 677888888777 5665543 5677888888888775422111 2444556666666
Q ss_pred cc
Q 044595 484 VI 485 (558)
Q Consensus 484 l~ 485 (558)
+-
T Consensus 353 l~ 354 (498)
T KOG4237|consen 353 LL 354 (498)
T ss_pred hc
Confidence 54
No 22
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.27 E-value=1.2e-11 Score=131.75 Aligned_cols=235 Identities=22% Similarity=0.208 Sum_probs=168.9
Q ss_pred ccceEEEeecccccccCCCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcccCCCCCCCeEeccCC
Q 044595 181 EKARRLSLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHLDLSES 260 (558)
Q Consensus 181 ~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~ 260 (558)
.+++.|++..|.++.+|.. .++|++|++++|.++.+|.. .++|+.|++++|.++.+|.. ..+|+.|++++|
T Consensus 222 ~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N~L~~Lp~l---p~~L~~L~Ls~N 292 (788)
T PRK15387 222 AHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL----PPGLLELSIFSNPLTHLPAL---PSGLCKLWIFGN 292 (788)
T ss_pred cCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc----ccccceeeccCCchhhhhhc---hhhcCEEECcCC
Confidence 5789999999999988764 58999999999999998853 47899999999999988763 367889999999
Q ss_pred CCCCcchhhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhccCCCcc
Q 044595 261 DIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGLKSLE 340 (558)
Q Consensus 261 ~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~ 340 (558)
+++.+|.. +++|+.|++++| .+..+|.. ..+|+.|.+.++....+ + . -..+|+
T Consensus 293 ~Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~l----p~~L~~L~Ls~N~L~~L----------------P-~--lp~~Lq 345 (788)
T PRK15387 293 QLTSLPVL---PPGLQELSVSDN-QLASLPAL----PSELCKLWAYNNQLTSL----------------P-T--LPSGLQ 345 (788)
T ss_pred cccccccc---ccccceeECCCC-ccccCCCC----cccccccccccCccccc----------------c-c--cccccc
Confidence 99999863 478999999988 67777752 23577777776644321 1 1 114688
Q ss_pred eEEEEEccchhHHHHhccccccccccceeeeeccCCCcccccchhhhhhhhhhhhccccccceeEeccCCcccccccccc
Q 044595 341 VISFTLRSSHGLQMILSSDQLRSCTRALSFQCFNDSTSLEVSALADLKQLKMLRIARSEILEELKMDCAGEVRQFVFHSL 420 (558)
Q Consensus 341 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L 420 (558)
.|+++.+....++.. ..++..|.+.++ .+..++ . ...+|+.|+++++ .+..++. .+++|
T Consensus 346 ~LdLS~N~Ls~LP~l------p~~L~~L~Ls~N-~L~~LP--~--l~~~L~~LdLs~N-~Lt~LP~---------l~s~L 404 (788)
T PRK15387 346 ELSVSDNQLASLPTL------PSELYKLWAYNN-RLTSLP--A--LPSGLKELIVSGN-RLTSLPV---------LPSEL 404 (788)
T ss_pred eEecCCCccCCCCCC------Ccccceehhhcc-ccccCc--c--cccccceEEecCC-cccCCCC---------cccCC
Confidence 888887776655432 235666766553 233222 1 1357889999877 4444432 14689
Q ss_pred cEEEEcCCCCCCCchhhhccCCCceEEEecCchhHHHhhcCccCCcccccccCCCCcccceeeccCcc
Q 044595 421 NKVEIYGCSKLKDLTFLVFAPNLKSIKVTGSHAMEAIISVGKFAEVPEVMANLNPFAKLQNLEVIGAI 488 (558)
Q Consensus 421 ~~L~L~~~~~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 488 (558)
+.|+++++ .+..+|.+ +.+|+.|++++|.. +.+ +..+..+++|+.|++++++
T Consensus 405 ~~LdLS~N-~LssIP~l--~~~L~~L~Ls~NqL-t~L------------P~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 405 KELMVSGN-RLTSLPML--PSGLLSLSVYRNQL-TRL------------PESLIHLSSETTVNLEGNP 456 (788)
T ss_pred CEEEccCC-cCCCCCcc--hhhhhhhhhccCcc-ccc------------ChHHhhccCCCeEECCCCC
Confidence 99999998 67777753 45788899888654 333 3356778999999998864
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.11 E-value=5.5e-11 Score=117.69 Aligned_cols=107 Identities=28% Similarity=0.334 Sum_probs=51.4
Q ss_pred CCCCceEEEeecCCccc-----cCchhhhCCCCCcEEEcCCCCCcc-------cCcccCCCCCCCeEeccCCCCC-Ccch
Q 044595 201 TCPHLLTFFLNKNRFQM-----IPNDFFQFMPSLKVLNLSYSKLTS-------LPLGISKLVSLQHLDLSESDIE-ELPG 267 (558)
Q Consensus 201 ~~~~Lr~L~l~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~l~~-------lp~~i~~L~~L~~L~l~~~~l~-~lp~ 267 (558)
.+.+|+.+++.++.+.. ++.. +...+.|+.|+++++.+.. ++..+..+.+|++|++++|.+. ..+.
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~-l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 99 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASA-LRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG 99 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHH-HhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH
Confidence 34446666666665521 2222 3445556666666654431 2233445556666666666554 2333
Q ss_pred hhhcCCC---CcEEeccCCCCCCc-----CchhhhcCC-CCCcEEEeeccCC
Q 044595 268 ELKALVN---LKCLDLEYTGNLIT-----IPRQLISNL-SRLHVLRMFGAGH 310 (558)
Q Consensus 268 ~i~~l~~---L~~L~l~~~~~l~~-----lp~~~i~~l-~~L~~L~l~~~~~ 310 (558)
.+..+.+ |++|++++|. +.. +... +..+ ++|+.|++.+|..
T Consensus 100 ~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~-l~~~~~~L~~L~L~~n~l 149 (319)
T cd00116 100 VLESLLRSSSLQELKLNNNG-LGDRGLRLLAKG-LKDLPPALEKLVLGRNRL 149 (319)
T ss_pred HHHHHhccCcccEEEeeCCc-cchHHHHHHHHH-HHhCCCCceEEEcCCCcC
Confidence 3433333 6666666552 221 1111 3344 5556666655543
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.09 E-value=5.1e-11 Score=117.97 Aligned_cols=158 Identities=22% Similarity=0.159 Sum_probs=104.9
Q ss_pred cccceEEEeecccccc-----cC-CCCCCCCceEEEeecCCccccC------chhhhCCCCCcEEEcCCCCCc-ccCccc
Q 044595 180 WEKARRLSLMHNQITN-----LS-EIPTCPHLLTFFLNKNRFQMIP------NDFFQFMPSLKVLNLSYSKLT-SLPLGI 246 (558)
Q Consensus 180 ~~~lr~L~l~~~~~~~-----l~-~~~~~~~Lr~L~l~~~~~~~~~------~~~~~~l~~L~~L~l~~~~l~-~lp~~i 246 (558)
+..++.+.+.++.+.. +. .+...+.++.++++++.+...+ ...+..+.+|+.|++++|.+. ..+..+
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence 3557888888887643 22 2456777899999887765312 223677889999999999886 344445
Q ss_pred CCCCC---CCeEeccCCCCC-----CcchhhhcC-CCCcEEeccCCCCCC----cCchhhhcCCCCCcEEEeeccCCCcc
Q 044595 247 SKLVS---LQHLDLSESDIE-----ELPGELKAL-VNLKCLDLEYTGNLI----TIPRQLISNLSRLHVLRMFGAGHNAF 313 (558)
Q Consensus 247 ~~L~~---L~~L~l~~~~l~-----~lp~~i~~l-~~L~~L~l~~~~~l~----~lp~~~i~~l~~L~~L~l~~~~~~~~ 313 (558)
..+.+ |++|++++|.+. .+...+..+ ++|+.|++++|.... .++.. +..+++|++|++.++.....
T Consensus 102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~ 180 (319)
T cd00116 102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA-LRANRDLKELNLANNGIGDA 180 (319)
T ss_pred HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH-HHhCCCcCEEECcCCCCchH
Confidence 55554 999999999877 234456677 899999999984331 22322 56778899999987754310
Q ss_pred cccccCCcccCCcchhHHHhccCCCcceEEEEEccc
Q 044595 314 DEASKDSSLFGGGEFIVEELLGLKSLEVISFTLRSS 349 (558)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~ 349 (558)
. .......+..+++|+.|++..+..
T Consensus 181 ~-----------~~~l~~~l~~~~~L~~L~L~~n~i 205 (319)
T cd00116 181 G-----------IRALAEGLKANCNLEVLDLNNNGL 205 (319)
T ss_pred H-----------HHHHHHHHHhCCCCCEEeccCCcc
Confidence 0 112344555666777777765543
No 25
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.06 E-value=1.1e-11 Score=117.98 Aligned_cols=243 Identities=16% Similarity=0.188 Sum_probs=114.0
Q ss_pred CCCCCCCeEeccCC-CCCC--cchhhhcCCCCcEEeccCCCCCCcCchh-hhcCCCCCcEEEeeccCCCcccccccCCcc
Q 044595 247 SKLVSLQHLDLSES-DIEE--LPGELKALVNLKCLDLEYTGNLITIPRQ-LISNLSRLHVLRMFGAGHNAFDEASKDSSL 322 (558)
Q Consensus 247 ~~L~~L~~L~l~~~-~l~~--lp~~i~~l~~L~~L~l~~~~~l~~lp~~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 322 (558)
.++++++.|.+.+| +++. +-.--....+|++|++..|..++...-. +...+++|.+++++.|....
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~---------- 230 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQIS---------- 230 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhh----------
Confidence 34555555555555 3331 1112234455666666665555443322 23345566666666554432
Q ss_pred cCCcchhHHHhccCCCcceEEEEEccchhHHHHhccccccccccceeeeeccCCCcccccch-hhhhhhhhhhhcccccc
Q 044595 323 FGGGEFIVEELLGLKSLEVISFTLRSSHGLQMILSSDQLRSCTRALSFQCFNDSTSLEVSAL-ADLKQLKMLRIARSEIL 401 (558)
Q Consensus 323 ~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~l 401 (558)
....-.-...+++++++...++.....+.+........-+..+++..|..+++..+-.+ ..+..|+.|..++|..+
T Consensus 231 ---~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~ 307 (483)
T KOG4341|consen 231 ---GNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDI 307 (483)
T ss_pred ---cCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCC
Confidence 11111222233334433333322223333332222222344444555555554443222 23556666666666554
Q ss_pred ceeEeccCCcccccccccccEEEEcCCCCCCCch--hh-hccCCCceEEEecCchhHHHhhcCccCCcccccccCCCCcc
Q 044595 402 EELKMDCAGEVRQFVFHSLNKVEIYGCSKLKDLT--FL-VFAPNLKSIKVTGSHAMEAIISVGKFAEVPEVMANLNPFAK 478 (558)
Q Consensus 402 ~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~--~l-~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~ 478 (558)
.+......+ ...++|+.|.+.+|.++.+.. .+ ...+.|+.+++..|..+.+. .+.....++|.
T Consensus 308 ~d~~l~aLg----~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~----------tL~sls~~C~~ 373 (483)
T KOG4341|consen 308 TDEVLWALG----QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG----------TLASLSRNCPR 373 (483)
T ss_pred chHHHHHHh----cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh----------hHhhhccCCch
Confidence 433322222 135666777777666655532 22 24566666666666554432 11123345666
Q ss_pred cceeeccCccccccc-----ccCCCCCCCcceEeeecCCCCcC
Q 044595 479 LQNLEVIGAINLKSI-----YWKPLRFPHLKTMSFFHCNKLKM 516 (558)
Q Consensus 479 L~~L~l~~c~~L~~~-----~~~~~~l~~L~~L~i~~C~~L~~ 516 (558)
|+.|.++.|..+.+- .....++..|+.+++.+||.++.
T Consensus 374 lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d 416 (483)
T KOG4341|consen 374 LRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITD 416 (483)
T ss_pred hccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchH
Confidence 666666666655544 22233456666666666666553
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.03 E-value=3.6e-10 Score=98.89 Aligned_cols=101 Identities=33% Similarity=0.461 Sum_probs=23.0
Q ss_pred ccceEEEeecccccccCCCC-CCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCccc-CCCCCCCeEecc
Q 044595 181 EKARRLSLMHNQITNLSEIP-TCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGI-SKLVSLQHLDLS 258 (558)
Q Consensus 181 ~~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i-~~L~~L~~L~l~ 258 (558)
.++|.|++.++.++.+..+. .+.+|+.|++++|.+..+.. +..++.|++|++++|.++.++..+ ..+++|+.|+++
T Consensus 19 ~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLS 96 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS---S-CHHHHHH-TT--EEE-T
T ss_pred cccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCEEECc
Confidence 34455555555555554443 34455555555555554443 444555555555555555443333 234555555555
Q ss_pred CCCCCCcc--hhhhcCCCCcEEeccCC
Q 044595 259 ESDIEELP--GELKALVNLKCLDLEYT 283 (558)
Q Consensus 259 ~~~l~~lp--~~i~~l~~L~~L~l~~~ 283 (558)
+|+|..+- ..+..+++|++|++.+|
T Consensus 97 ~N~I~~l~~l~~L~~l~~L~~L~L~~N 123 (175)
T PF14580_consen 97 NNKISDLNELEPLSSLPKLRVLSLEGN 123 (175)
T ss_dssp TS---SCCCCGGGGG-TT--EEE-TT-
T ss_pred CCcCCChHHhHHHHcCCCcceeeccCC
Confidence 55444321 23344455555555544
No 27
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.01 E-value=1.3e-10 Score=109.96 Aligned_cols=125 Identities=23% Similarity=0.323 Sum_probs=100.9
Q ss_pred EEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCc-ccCCCCCCCeEeccCCCCCCc-chhhhcCCCCcEEeccCCCC
Q 044595 208 FFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPL-GISKLVSLQHLDLSESDIEEL-PGELKALVNLKCLDLEYTGN 285 (558)
Q Consensus 208 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~ 285 (558)
.+-++..+..+|.+. ...-..++|..|+|+.+|. .|+.+++||.|||++|.|+.+ |..+..+.+|..|-+.++++
T Consensus 51 VdCr~~GL~eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk 127 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK 127 (498)
T ss_pred EEccCCCcccCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc
Confidence 444566777787663 3466788999999999975 689999999999999999977 77899999999999999779
Q ss_pred CCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhccCCCcceEEEEEccch
Q 044595 286 LITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGLKSLEVISFTLRSSH 350 (558)
Q Consensus 286 l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~ 350 (558)
+..+|.+.+++|..|+.|.+--+... -.....+..+++|..|.+..+...
T Consensus 128 I~~l~k~~F~gL~slqrLllNan~i~---------------Cir~~al~dL~~l~lLslyDn~~q 177 (498)
T KOG4237|consen 128 ITDLPKGAFGGLSSLQRLLLNANHIN---------------CIRQDALRDLPSLSLLSLYDNKIQ 177 (498)
T ss_pred hhhhhhhHhhhHHHHHHHhcChhhhc---------------chhHHHHHHhhhcchhcccchhhh
Confidence 99999999999999999988655543 234566778888888887765543
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.93 E-value=1.3e-09 Score=95.38 Aligned_cols=113 Identities=31% Similarity=0.381 Sum_probs=52.6
Q ss_pred CcccccCCCCC-CcccceEEEeecccccccCCCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCccc--Cc
Q 044595 168 GVGLVEAPDVT-GWEKARRLSLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSL--PL 244 (558)
Q Consensus 168 ~~~~~~~~~~~-~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l--p~ 244 (558)
+.....+..+. .+.+++.|++++|.+..++.+..++.|++|++++|.+.++.+.+...+++|+.|++++|.|..+ -.
T Consensus 28 ~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~ 107 (175)
T PF14580_consen 28 GNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELE 107 (175)
T ss_dssp --------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCG
T ss_pred ccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhH
Confidence 33444444454 4678999999999999999999999999999999999999776556799999999999988754 24
Q ss_pred ccCCCCCCCeEeccCCCCCCcch----hhhcCCCCcEEec
Q 044595 245 GISKLVSLQHLDLSESDIEELPG----ELKALVNLKCLDL 280 (558)
Q Consensus 245 ~i~~L~~L~~L~l~~~~l~~lp~----~i~~l~~L~~L~l 280 (558)
.++.+++|++|++.+|.+.+.+. .+..+++|+.||-
T Consensus 108 ~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 108 PLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp GGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred HHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 57789999999999997764432 2445555555553
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=1.3e-09 Score=104.53 Aligned_cols=212 Identities=18% Similarity=0.180 Sum_probs=104.1
Q ss_pred CCCCceEEEeecCCccccCc-hhhhCCCCCcEEEcCCCCCc---ccCcccCCCCCCCeEeccCCCCCCcchhhhcCCCCc
Q 044595 201 TCPHLLTFFLNKNRFQMIPN-DFFQFMPSLKVLNLSYSKLT---SLPLGISKLVSLQHLDLSESDIEELPGELKALVNLK 276 (558)
Q Consensus 201 ~~~~Lr~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~l~---~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~ 276 (558)
++++||...+.++.+...+. .....+++++.|||+.|-+. .+-.-...|++|+.|+++.|.+.....
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~--------- 189 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS--------- 189 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc---------
Confidence 44555555555555544332 23455555555555555333 222223445555555555554432211
Q ss_pred EEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhccCCCcceEEEEEccchhHHHHh
Q 044595 277 CLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGLKSLEVISFTLRSSHGLQMIL 356 (558)
Q Consensus 277 ~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~ 356 (558)
......++.|+.|.+..|+.. ......-+..+++|..|.+..+.......
T Consensus 190 --------------s~~~~~l~~lK~L~l~~CGls--------------~k~V~~~~~~fPsl~~L~L~~N~~~~~~~-- 239 (505)
T KOG3207|consen 190 --------------SNTTLLLSHLKQLVLNSCGLS--------------WKDVQWILLTFPSLEVLYLEANEIILIKA-- 239 (505)
T ss_pred --------------ccchhhhhhhheEEeccCCCC--------------HHHHHHHHHhCCcHHHhhhhcccccceec--
Confidence 111123444555555555443 22333344445555555555443111110
Q ss_pred ccccccccccceeeeeccCCCcccccchhhhhhhhhhhhccccccceeEeccCC-cccccccccccEEEEcCCCCCCCc-
Q 044595 357 SSDQLRSCTRALSFQCFNDSTSLEVSALADLKQLKMLRIARSEILEELKMDCAG-EVRQFVFHSLNKVEIYGCSKLKDL- 434 (558)
Q Consensus 357 ~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~-~~~~~~~~~L~~L~L~~~~~l~~l- 434 (558)
........|+.|++++.+.+....+..++.++.|+.|.++.+ ++.++..-... .--...|++|++|.+..+ ++.++
T Consensus 240 ~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N-~I~~w~ 317 (505)
T KOG3207|consen 240 TSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISEN-NIRDWR 317 (505)
T ss_pred chhhhhhHHhhccccCCcccccccccccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccC-cccccc
Confidence 011111246666666655554443444667788888888776 44443221110 001134889999999888 44444
Q ss_pred --hhhhccCCCceEEEecCch
Q 044595 435 --TFLVFAPNLKSIKVTGSHA 453 (558)
Q Consensus 435 --~~l~~l~~L~~L~l~~c~~ 453 (558)
..+..+++|+.|.+..++.
T Consensus 318 sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 318 SLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred ccchhhccchhhhhhcccccc
Confidence 4455677778777665543
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.66 E-value=8.2e-10 Score=109.26 Aligned_cols=165 Identities=27% Similarity=0.326 Sum_probs=78.2
Q ss_pred EEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcccCCCCCCCeEeccCCCCCCcchhhhcCCCCcEEeccCCCCCC
Q 044595 208 FFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHLDLSESDIEELPGELKALVNLKCLDLEYTGNLI 287 (558)
Q Consensus 208 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~ 287 (558)
.+++.|++..+|.. +..+..|..+.+..|.+..+|..+++|..|.+|+++.|.+..+|..+..|+ |+.|-+++| +++
T Consensus 80 aDlsrNR~~elp~~-~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN-kl~ 156 (722)
T KOG0532|consen 80 ADLSRNRFSELPEE-ACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN-KLT 156 (722)
T ss_pred hhccccccccCchH-HHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC-ccc
Confidence 34445555555444 333444455555555555555555555555555555555555554444432 445544443 444
Q ss_pred cCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhccCCCcceEEEEEccchhHHHHhccccccccccc
Q 044595 288 TIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGLKSLEVISFTLRSSHGLQMILSSDQLRSCTRA 367 (558)
Q Consensus 288 ~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 367 (558)
.+|.+ ++.+..|.+|+.+.|... ..+.+++.+..|+.|.+..+....++.-.... .|..
T Consensus 157 ~lp~~-ig~~~tl~~ld~s~nei~----------------slpsql~~l~slr~l~vrRn~l~~lp~El~~L----pLi~ 215 (722)
T KOG0532|consen 157 SLPEE-IGLLPTLAHLDVSKNEIQ----------------SLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL----PLIR 215 (722)
T ss_pred cCCcc-cccchhHHHhhhhhhhhh----------------hchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC----ceee
Confidence 55544 444444444444433321 23444444445554444444333332221111 3445
Q ss_pred eeeeeccCCCcccccchhhhhhhhhhhhccc
Q 044595 368 LSFQCFNDSTSLEVSALADLKQLKMLRIARS 398 (558)
Q Consensus 368 L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 398 (558)
|+++ |+++..+++. +.+|++|++|.|.++
T Consensus 216 lDfS-cNkis~iPv~-fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 216 LDFS-CNKISYLPVD-FRKMRHLQVLQLENN 244 (722)
T ss_pred eecc-cCceeecchh-hhhhhhheeeeeccC
Confidence 5553 3444445443 566667777766655
No 31
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.65 E-value=1.2e-09 Score=104.24 Aligned_cols=142 Identities=13% Similarity=0.185 Sum_probs=62.9
Q ss_pred cccceeeeeccCCCcccccch-hhhhhhhhhhhccccccceeEeccCCcccccccccccEEEEcCCCCCCCc--hh-hhc
Q 044595 364 CTRALSFQCFNDSTSLEVSAL-ADLKQLKMLRIARSEILEELKMDCAGEVRQFVFHSLNKVEIYGCSKLKDL--TF-LVF 439 (558)
Q Consensus 364 ~L~~L~l~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l--~~-l~~ 439 (558)
.++.++.++|....+..+.++ ...++|+.|.+.+|..+.+......+ ...+.|+.+++.+|....+- .. -.+
T Consensus 295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~----rn~~~Le~l~~e~~~~~~d~tL~sls~~ 370 (483)
T KOG4341|consen 295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLG----RNCPHLERLDLEECGLITDGTLASLSRN 370 (483)
T ss_pred HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhh----cCChhhhhhcccccceehhhhHhhhccC
Confidence 345555555555444443333 23455555555555443332222111 12455555555555433332 11 124
Q ss_pred cCCCceEEEecCchhHHHhhcCccCCcccccccCCCCcccceeeccCccccccccc-CCCCCCCcceEeeecCCCCcC
Q 044595 440 APNLKSIKVTGSHAMEAIISVGKFAEVPEVMANLNPFAKLQNLEVIGAINLKSIYW-KPLRFPHLKTMSFFHCNKLKM 516 (558)
Q Consensus 440 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~-~~~~l~~L~~L~i~~C~~L~~ 516 (558)
+|.|+.|.+++|..+++.-. ..+.....+...|..+.+++|+.+.+-.. ....+++|+.+++.+|.....
T Consensus 371 C~~lr~lslshce~itD~gi-------~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 371 CPRLRVLSLSHCELITDEGI-------RHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTK 441 (483)
T ss_pred CchhccCChhhhhhhhhhhh-------hhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhh
Confidence 55566666665555444200 01111223445555555555555544322 122345555555555554443
No 32
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.59 E-value=4.6e-08 Score=70.17 Aligned_cols=59 Identities=41% Similarity=0.633 Sum_probs=42.8
Q ss_pred CCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccC-cccCCCCCCCeEeccCCC
Q 044595 203 PHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLP-LGISKLVSLQHLDLSESD 261 (558)
Q Consensus 203 ~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~ 261 (558)
|+|++|++++|.+..+|+..|..+++|++|++++|.++.+| ..+.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45677777777777777777777777777777777777664 456777777777777764
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.57 E-value=9.4e-09 Score=94.00 Aligned_cols=130 Identities=25% Similarity=0.253 Sum_probs=82.5
Q ss_pred CCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcccCCCCCCCeEeccCCCCCCcchhhhcCCCCcEEecc
Q 044595 202 CPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHLDLSESDIEELPGELKALVNLKCLDLE 281 (558)
Q Consensus 202 ~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 281 (558)
...|..+++++|.+..+.++ .+-.+.+|+|++++|.+..+- ++..|++|+.||+++|.++++-..-.++-+.++|.+.
T Consensus 283 Wq~LtelDLS~N~I~~iDES-vKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDES-VKLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred Hhhhhhccccccchhhhhhh-hhhccceeEEeccccceeeeh-hhhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 34566777777777766665 566677777777777776663 3666777777777777666655555566667777777
Q ss_pred CCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhccCCCcceEEEEEccch
Q 044595 282 YTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGLKSLEVISFTLRSSH 350 (558)
Q Consensus 282 ~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~ 350 (558)
+| .+..+.- ++++=+|..|++.++.+. ....+..+++++.|+++.+..+...
T Consensus 361 ~N-~iE~LSG--L~KLYSLvnLDl~~N~Ie--------------~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 361 QN-KIETLSG--LRKLYSLVNLDLSSNQIE--------------ELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hh-hHhhhhh--hHhhhhheeccccccchh--------------hHHHhcccccccHHHHHhhcCCCcc
Confidence 66 4554442 556666666666665543 2334556666776766666655544
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=1.3e-08 Score=97.84 Aligned_cols=158 Identities=19% Similarity=0.176 Sum_probs=87.0
Q ss_pred CcccceEEEeecccccccC---CCCCCCCceEEEeecCCcccc--CchhhhCCCCCcEEEcCCCCCcccCcc--cCCCCC
Q 044595 179 GWEKARRLSLMHNQITNLS---EIPTCPHLLTFFLNKNRFQMI--PNDFFQFMPSLKVLNLSYSKLTSLPLG--ISKLVS 251 (558)
Q Consensus 179 ~~~~lr~L~l~~~~~~~l~---~~~~~~~Lr~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~l~~lp~~--i~~L~~ 251 (558)
.++++|.+++.++.+.... -...|+++|.|+++.|-+... ...+...+++|+.|+++.|.+....++ -..+.+
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 3456777777766655544 245677777777777665532 223456677777777777765533222 124567
Q ss_pred CCeEeccCCCCC--CcchhhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchh
Q 044595 252 LQHLDLSESDIE--ELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFI 329 (558)
Q Consensus 252 L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 329 (558)
|+.|.+++|+++ ++-.....+++|+.|++.+|..+..-... ..-+..|+.|++.++.... ...
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li~--------------~~~ 263 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLID--------------FDQ 263 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCcccc--------------ccc
Confidence 777777777666 23233445567777777666322111111 2335556666666654432 122
Q ss_pred HHHhccCCCcceEEEEEccchh
Q 044595 330 VEELLGLKSLEVISFTLRSSHG 351 (558)
Q Consensus 330 ~~~L~~l~~L~~L~l~~~~~~~ 351 (558)
....+.++.|+.|.+..++..+
T Consensus 264 ~~~~~~l~~L~~Lnls~tgi~s 285 (505)
T KOG3207|consen 264 GYKVGTLPGLNQLNLSSTGIAS 285 (505)
T ss_pred ccccccccchhhhhccccCcch
Confidence 2334555556655555554443
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.56 E-value=5.7e-08 Score=99.12 Aligned_cols=120 Identities=35% Similarity=0.482 Sum_probs=70.2
Q ss_pred EEeecccc-cccCCCCCCCCceEEEeecCCccccCchhhhCCC-CCcEEEcCCCCCcccCcccCCCCCCCeEeccCCCCC
Q 044595 186 LSLMHNQI-TNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMP-SLKVLNLSYSKLTSLPLGISKLVSLQHLDLSESDIE 263 (558)
Q Consensus 186 L~l~~~~~-~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~l~ 263 (558)
+....+.+ .....+...+.+..|.+.++.+..+++. ...+. +|+.|+++++.+..+|..++.+++|+.|+++.|.+.
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~ 176 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS 176 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCcccccCccc-cccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence 44444443 3333344445666666666666666654 33342 666666666666666656666666666666666666
Q ss_pred CcchhhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeecc
Q 044595 264 ELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGA 308 (558)
Q Consensus 264 ~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~ 308 (558)
++|...+.+.+|+.|+++++ .+..+|.. ++.+..|++|.+.+.
T Consensus 177 ~l~~~~~~~~~L~~L~ls~N-~i~~l~~~-~~~~~~L~~l~~~~N 219 (394)
T COG4886 177 DLPKLLSNLSNLNNLDLSGN-KISDLPPE-IELLSALEELDLSNN 219 (394)
T ss_pred hhhhhhhhhhhhhheeccCC-ccccCchh-hhhhhhhhhhhhcCC
Confidence 66665556666666666665 55666654 334444555555544
No 36
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=4.4e-09 Score=96.10 Aligned_cols=83 Identities=19% Similarity=0.288 Sum_probs=39.9
Q ss_pred ccccEEEEcCCCCCC---Cchhh-hccCCCceEEEecCchhHHHhhcCccCCcccccccCCCCcccceeeccCccccccc
Q 044595 418 HSLNKVEIYGCSKLK---DLTFL-VFAPNLKSIKVTGSHAMEAIISVGKFAEVPEVMANLNPFAKLQNLEVIGAINLKSI 493 (558)
Q Consensus 418 ~~L~~L~L~~~~~l~---~l~~l-~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~ 493 (558)
++|+.|.|+||.+-- ++..+ ..+|+|.+|+|++|..++.-. ...+..|+.|++|.++.|..+-.-
T Consensus 286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~-----------~~~~~kf~~L~~lSlsRCY~i~p~ 354 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDC-----------FQEFFKFNYLQHLSLSRCYDIIPE 354 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchH-----------HHHHHhcchheeeehhhhcCCChH
Confidence 455555555553211 12222 345666666666655544311 123345566666666666544321
Q ss_pred c-cCCCCCCCcceEeeecC
Q 044595 494 Y-WKPLRFPHLKTMSFFHC 511 (558)
Q Consensus 494 ~-~~~~~l~~L~~L~i~~C 511 (558)
. .+...+|+|.+|++.+|
T Consensus 355 ~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 355 TLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HeeeeccCcceEEEEeccc
Confidence 1 12334566666666665
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.51 E-value=1.4e-08 Score=100.63 Aligned_cols=134 Identities=25% Similarity=0.420 Sum_probs=116.5
Q ss_pred CCCCCcccceEEEeecccccccCCCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcccCCCCCCCe
Q 044595 175 PDVTGWEKARRLSLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQH 254 (558)
Q Consensus 175 ~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~ 254 (558)
..+..+..+..++++.|+++.++.-...--|++|.+++|.++.+|+. ++.+.+|..||.+.|.+..+|..++.+..|+.
T Consensus 115 ~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~-ig~~~tl~~ld~s~nei~slpsql~~l~slr~ 193 (722)
T KOG0532|consen 115 EAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEE-IGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRD 193 (722)
T ss_pred hhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCcc-cccchhHHHhhhhhhhhhhchHHhhhHHHHHH
Confidence 34556678888999999999887644445589999999999999999 56899999999999999999999999999999
Q ss_pred EeccCCCCCCcchhhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCCc
Q 044595 255 LDLSESDIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNA 312 (558)
Q Consensus 255 L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~ 312 (558)
|+++.|++..+|..+..| .|..||++.| ++..+|-. +.+|+.|++|-+..+....
T Consensus 194 l~vrRn~l~~lp~El~~L-pLi~lDfScN-kis~iPv~-fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 194 LNVRRNHLEDLPEELCSL-PLIRLDFSCN-KISYLPVD-FRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred HHHhhhhhhhCCHHHhCC-ceeeeecccC-ceeecchh-hhhhhhheeeeeccCCCCC
Confidence 999999999999999854 6999999966 89999988 8999999999998876543
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.48 E-value=1.6e-08 Score=92.49 Aligned_cols=131 Identities=30% Similarity=0.434 Sum_probs=108.6
Q ss_pred CCCcccceEEEeecccccccCC-CCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcccCCCCCCCeE
Q 044595 177 VTGWEKARRLSLMHNQITNLSE-IPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHL 255 (558)
Q Consensus 177 ~~~~~~lr~L~l~~~~~~~l~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L 255 (558)
+..|+.+..+++++|.++.+.. ..-.|.+|.|+++.|.+..+.. +..+.+|+.||+++|.++.+-..-.+|-|.++|
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTL 357 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeee
Confidence 4567889999999999988754 5667999999999999987765 788999999999999888774444578899999
Q ss_pred eccCCCCCCcchhhhcCCCCcEEeccCCCCCCcCch-hhhcCCCCCcEEEeeccCCC
Q 044595 256 DLSESDIEELPGELKALVNLKCLDLEYTGNLITIPR-QLISNLSRLHVLRMFGAGHN 311 (558)
Q Consensus 256 ~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~~ 311 (558)
.+.+|.+..+. .++++.+|..||+++| ++..+.. .-||+++.|+++.+.+++..
T Consensus 358 ~La~N~iE~LS-GL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 358 KLAQNKIETLS-GLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred ehhhhhHhhhh-hhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCCcc
Confidence 99999988775 7899999999999998 4554432 12899999999999887664
No 39
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.41 E-value=1.5e-07 Score=95.99 Aligned_cols=158 Identities=28% Similarity=0.422 Sum_probs=124.7
Q ss_pred CCCcccceEEEeecccccccCCCCCCC--CceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcccCCCCCCCe
Q 044595 177 VTGWEKARRLSLMHNQITNLSEIPTCP--HLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQH 254 (558)
Q Consensus 177 ~~~~~~lr~L~l~~~~~~~l~~~~~~~--~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~ 254 (558)
....+.+..+.+..+.+..++...... +|+.|++++|.+..+|.. +..+++|+.|++++|.+..+|...+.+.+|+.
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNN 190 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhh-hhccccccccccCCchhhhhhhhhhhhhhhhh
Confidence 344467899999999999998765554 899999999999998754 78899999999999999999988879999999
Q ss_pred EeccCCCCCCcchhhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhc
Q 044595 255 LDLSESDIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELL 334 (558)
Q Consensus 255 L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 334 (558)
|+++++.+..+|..++.+..|++|.++++. ....+.. ++++.++..+.+...... ..+..++
T Consensus 191 L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~-~~~~~~l~~l~l~~n~~~----------------~~~~~~~ 252 (394)
T COG4886 191 LDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSS-LSNLKNLSGLELSNNKLE----------------DLPESIG 252 (394)
T ss_pred eeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchh-hhhcccccccccCCceee----------------eccchhc
Confidence 999999999999888888889999999874 4445544 678888888775444322 1245566
Q ss_pred cCCCcceEEEEEccchhHH
Q 044595 335 GLKSLEVISFTLRSSHGLQ 353 (558)
Q Consensus 335 ~l~~L~~L~l~~~~~~~~~ 353 (558)
.+.+++.|++..+....+.
T Consensus 253 ~l~~l~~L~~s~n~i~~i~ 271 (394)
T COG4886 253 NLSNLETLDLSNNQISSIS 271 (394)
T ss_pred cccccceeccccccccccc
Confidence 7777777777765554443
No 40
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=1.9e-08 Score=92.05 Aligned_cols=62 Identities=18% Similarity=0.266 Sum_probs=41.0
Q ss_pred cccccEEEEcCCCCCCC--chhhhccCCCceEEEecCchhHHHhhcCccCCcccccccCCCCcccceeeccCccc
Q 044595 417 FHSLNKVEIYGCSKLKD--LTFLVFAPNLKSIKVTGSHAMEAIISVGKFAEVPEVMANLNPFAKLQNLEVIGAIN 489 (558)
Q Consensus 417 ~~~L~~L~L~~~~~l~~--l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 489 (558)
+++|..|+|++|..+++ +..+.+++.|++|.++.|+.+.- .....++..|+|.+|++.+|-.
T Consensus 312 cp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p-----------~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 312 CPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIP-----------ETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred CCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCCh-----------HHeeeeccCcceEEEEeccccC
Confidence 67777777777766665 33456777788888887776431 2223456678888888877754
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.39 E-value=1.3e-06 Score=93.75 Aligned_cols=106 Identities=19% Similarity=0.265 Sum_probs=80.1
Q ss_pred CceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCc-ccCcccCCCCCCCeEeccCCCCC-CcchhhhcCCCCcEEecc
Q 044595 204 HLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLT-SLPLGISKLVSLQHLDLSESDIE-ELPGELKALVNLKCLDLE 281 (558)
Q Consensus 204 ~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~ 281 (558)
.++.|++.++.+....+..+..+++|+.|+|++|.+. .+|..++.+++|++|+|++|.+. .+|..++.+++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3677888888877443334788888888888888887 67888888888888888888877 678888888888888888
Q ss_pred CCCCCCcCchhhhcC-CCCCcEEEeeccCC
Q 044595 282 YTGNLITIPRQLISN-LSRLHVLRMFGAGH 310 (558)
Q Consensus 282 ~~~~l~~lp~~~i~~-l~~L~~L~l~~~~~ 310 (558)
+|.....+|.. ++. ..++..+++.++..
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecCCcc
Confidence 88666677876 443 34566777665543
No 42
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.36 E-value=1.2e-07 Score=88.81 Aligned_cols=85 Identities=19% Similarity=0.206 Sum_probs=41.0
Q ss_pred CcccceEEEeeccccccc------CCCCCCCCceEEEeec----CCccccCchh------hhCCCCCcEEEcCCCCCc--
Q 044595 179 GWEKARRLSLMHNQITNL------SEIPTCPHLLTFFLNK----NRFQMIPNDF------FQFMPSLKVLNLSYSKLT-- 240 (558)
Q Consensus 179 ~~~~lr~L~l~~~~~~~l------~~~~~~~~Lr~L~l~~----~~~~~~~~~~------~~~l~~L~~L~l~~~~l~-- 240 (558)
....+..+++++|.+..- +.+.+-+.||..+++. .....+|+.. +-..++|++|+|++|.+.
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 345666777777665431 1233444666666652 1222333221 233446666666666443
Q ss_pred cc---CcccCCCCCCCeEeccCCCCC
Q 044595 241 SL---PLGISKLVSLQHLDLSESDIE 263 (558)
Q Consensus 241 ~l---p~~i~~L~~L~~L~l~~~~l~ 263 (558)
.+ -.-+..+..|+.|.|.+|.+.
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCC
Confidence 11 112344555666666666554
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.22 E-value=1.4e-06 Score=62.36 Aligned_cols=59 Identities=32% Similarity=0.532 Sum_probs=54.0
Q ss_pred ccceEEEeecccccccC--CCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCC
Q 044595 181 EKARRLSLMHNQITNLS--EIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKL 239 (558)
Q Consensus 181 ~~lr~L~l~~~~~~~l~--~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l 239 (558)
++++.|.+++|.+..++ .+..+++|++|++++|.+..+++..|..+++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 36889999999999987 478899999999999999999999999999999999999864
No 44
>PLN03150 hypothetical protein; Provisional
Probab=98.19 E-value=4.2e-06 Score=89.77 Aligned_cols=108 Identities=26% Similarity=0.442 Sum_probs=89.4
Q ss_pred cceEEEeeccccccc--CCCCCCCCceEEEeecCCcc-ccCchhhhCCCCCcEEEcCCCCCc-ccCcccCCCCCCCeEec
Q 044595 182 KARRLSLMHNQITNL--SEIPTCPHLLTFFLNKNRFQ-MIPNDFFQFMPSLKVLNLSYSKLT-SLPLGISKLVSLQHLDL 257 (558)
Q Consensus 182 ~lr~L~l~~~~~~~l--~~~~~~~~Lr~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l 257 (558)
.++.|+++++.+... +.+..+++|+.|++++|.+. .+|.. +..+++|++|++++|.++ .+|..+++|++|++|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~-~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 477888988888652 24678999999999999998 45554 899999999999999998 78999999999999999
Q ss_pred cCCCCC-CcchhhhcC-CCCcEEeccCCCCCCcCc
Q 044595 258 SESDIE-ELPGELKAL-VNLKCLDLEYTGNLITIP 290 (558)
Q Consensus 258 ~~~~l~-~lp~~i~~l-~~L~~L~l~~~~~l~~lp 290 (558)
++|.+. .+|..++.+ .++..+++.+|..+...|
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 999887 889888764 567889998875544443
No 45
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.13 E-value=2.7e-06 Score=55.80 Aligned_cols=39 Identities=36% Similarity=0.597 Sum_probs=21.1
Q ss_pred CCcEEEcCCCCCcccCcccCCCCCCCeEeccCCCCCCcc
Q 044595 228 SLKVLNLSYSKLTSLPLGISKLVSLQHLDLSESDIEELP 266 (558)
Q Consensus 228 ~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp 266 (558)
+|++|++++|.++.+|..+++|++|++|++++|.++++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 455556666655555555555666666666555555443
No 46
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.12 E-value=6.8e-07 Score=83.98 Aligned_cols=246 Identities=19% Similarity=0.216 Sum_probs=120.6
Q ss_pred CCCCCCceEEEeecCCccc----cCchhhhCCCCCcEEEcCCCC----CcccCcc-------cCCCCCCCeEeccCCCCC
Q 044595 199 IPTCPHLLTFFLNKNRFQM----IPNDFFQFMPSLKVLNLSYSK----LTSLPLG-------ISKLVSLQHLDLSESDIE 263 (558)
Q Consensus 199 ~~~~~~Lr~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~----l~~lp~~-------i~~L~~L~~L~l~~~~l~ 263 (558)
...+..+..+++++|.+.. .....+.+.+.|+..++++-. ...+|+. +-..++|++|+|+.|-+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 4556778888888888752 222235667788888888751 1244443 334567888888887554
Q ss_pred -C----cchhhhcCCCCcEEeccCCCCCCcCchhhhc----------CCCCCcEEEeeccCCCcccccccCCcccCCcch
Q 044595 264 -E----LPGELKALVNLKCLDLEYTGNLITIPRQLIS----------NLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEF 328 (558)
Q Consensus 264 -~----lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~----------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 328 (558)
. +-.-+.+...|++|.+.+|. +...--..++ +.++=..|..+.|..+.+.... ...
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~g--------a~~ 176 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGG--------ATA 176 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccccc--------HHH
Confidence 1 22235566777788877773 3322211111 1122222222222222211100 223
Q ss_pred hHHHhccCCCcceEEEEEccchhHHHHhccccccccccceeeeeccCCCcccccchhhhhhhhhhhhccccccceeEecc
Q 044595 329 IVEELLGLKSLEVISFTLRSSHGLQMILSSDQLRSCTRALSFQCFNDSTSLEVSALADLKQLKMLRIARSEILEELKMDC 408 (558)
Q Consensus 329 ~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~ 408 (558)
.-..++.++.|+.+.+..++...-. . ..-..++..+++|+.|++.++.....-....
T Consensus 177 ~A~~~~~~~~leevr~~qN~I~~eG----------------------~-~al~eal~~~~~LevLdl~DNtft~egs~~L 233 (382)
T KOG1909|consen 177 LAEAFQSHPTLEEVRLSQNGIRPEG----------------------V-TALAEALEHCPHLEVLDLRDNTFTLEGSVAL 233 (382)
T ss_pred HHHHHHhccccceEEEecccccCch----------------------h-HHHHHHHHhCCcceeeecccchhhhHHHHHH
Confidence 3444555555665555544322110 0 0011134556666666666553221111100
Q ss_pred CCcccccccccccEEEEcCCCCCCCch------h-hhccCCCceEEEecCchhHHHhhcCccCCcccccccCCCCcccce
Q 044595 409 AGEVRQFVFHSLNKVEIYGCSKLKDLT------F-LVFAPNLKSIKVTGSHAMEAIISVGKFAEVPEVMANLNPFAKLQN 481 (558)
Q Consensus 409 ~~~~~~~~~~~L~~L~L~~~~~l~~l~------~-l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 481 (558)
. .+-..+++|++|++.+| .+++=. . -...|+|+.|.+.+|..-.+-.. .+......-|.|+.
T Consensus 234 a--kaL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~--------~la~~~~ek~dL~k 302 (382)
T KOG1909|consen 234 A--KALSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAAL--------ALAACMAEKPDLEK 302 (382)
T ss_pred H--HHhcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHH--------HHHHHHhcchhhHH
Confidence 0 01113567777777777 555421 1 13467777777777665333211 11123334667777
Q ss_pred eeccCc
Q 044595 482 LEVIGA 487 (558)
Q Consensus 482 L~l~~c 487 (558)
|+|++|
T Consensus 303 LnLngN 308 (382)
T KOG1909|consen 303 LNLNGN 308 (382)
T ss_pred hcCCcc
Confidence 777664
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.09 E-value=6.4e-07 Score=91.65 Aligned_cols=126 Identities=32% Similarity=0.469 Sum_probs=77.1
Q ss_pred cccceEEEeecccccc-cCCCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcccCCCCCCCeEecc
Q 044595 180 WEKARRLSLMHNQITN-LSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHLDLS 258 (558)
Q Consensus 180 ~~~lr~L~l~~~~~~~-l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~ 258 (558)
+..+..+.+..|.+.. ...+..+.+|..+++.+|.+..+... +..+.+|++|++++|.|+.+ .++..+..|+.|++.
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLS 148 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccc-hhhhhcchheeccccccccc-cchhhccchhhheec
Confidence 3455555566666665 23356667777777777777666553 45577777777777777766 346666667777777
Q ss_pred CCCCCCcchhhhcCCCCcEEeccCCCCCCcCch-hhhcCCCCCcEEEeeccCC
Q 044595 259 ESDIEELPGELKALVNLKCLDLEYTGNLITIPR-QLISNLSRLHVLRMFGAGH 310 (558)
Q Consensus 259 ~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~ 310 (558)
+|.++.+. .+..+..|+.+++++| .+..+.. . ...+.+++.+.+.++..
T Consensus 149 ~N~i~~~~-~~~~l~~L~~l~l~~n-~i~~ie~~~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 149 GNLISDIS-GLESLKSLKLLDLSYN-RIVDIENDE-LSELISLEELDLGGNSI 198 (414)
T ss_pred cCcchhcc-CCccchhhhcccCCcc-hhhhhhhhh-hhhccchHHHhccCCch
Confidence 77776654 4444667777777766 3444433 1 24555566665555443
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.02 E-value=1.5e-07 Score=96.04 Aligned_cols=158 Identities=27% Similarity=0.319 Sum_probs=107.2
Q ss_pred ccCCCCCCcccceEEEeecccccccCCC---------------------------------CCCCCceEEEeecCCcccc
Q 044595 172 VEAPDVTGWEKARRLSLMHNQITNLSEI---------------------------------PTCPHLLTFFLNKNRFQMI 218 (558)
Q Consensus 172 ~~~~~~~~~~~lr~L~l~~~~~~~l~~~---------------------------------~~~~~Lr~L~l~~~~~~~~ 218 (558)
....++..++.+|+|.+.++++.....+ .....|.+.+.++|.+..+
T Consensus 100 t~pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~m 179 (1096)
T KOG1859|consen 100 TEPISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLM 179 (1096)
T ss_pred CCCceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhH
Confidence 3345667788999999988876542211 1123455556667777666
Q ss_pred CchhhhCCCCCcEEEcCCCCCcccCcccCCCCCCCeEeccCCCCCCcchhhhcCCCCcEEeccCCCCCCcCchhhhcCCC
Q 044595 219 PNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHLDLSESDIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLS 298 (558)
Q Consensus 219 ~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~ 298 (558)
..+ +.-++.|+.|+|+.|+++..- .+..|.+|++|||+.|.+..+|.--..--+|+.|++++| .++.+-. +.+|.
T Consensus 180 D~S-Lqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN-~l~tL~g--ie~Lk 254 (1096)
T KOG1859|consen 180 DES-LQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNN-ALTTLRG--IENLK 254 (1096)
T ss_pred HHH-HHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeeccc-HHHhhhh--HHhhh
Confidence 555 677888999999999888774 788889999999999988888753222234888999887 6676664 78888
Q ss_pred CCcEEEeeccCCCcccccccCCcccCCcchhHHHhccCCCcceEEEEEcc
Q 044595 299 RLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGLKSLEVISFTLRS 348 (558)
Q Consensus 299 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~ 348 (558)
+|+.|+++++-.. ....++-|..|..|++|.+.++.
T Consensus 255 sL~~LDlsyNll~--------------~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 255 SLYGLDLSYNLLS--------------EHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhhccchhHhhhh--------------cchhhhHHHHHHHHHHHhhcCCc
Confidence 9999988876554 22334445555556666555443
No 49
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.99 E-value=5e-05 Score=75.04 Aligned_cols=63 Identities=17% Similarity=0.318 Sum_probs=39.1
Q ss_pred hCCCCCcEEEcCCCCCcccCcccCCCCCCCeEeccCC-CCCCcchhhhcCCCCcEEeccCCCCCCcCch
Q 044595 224 QFMPSLKVLNLSYSKLTSLPLGISKLVSLQHLDLSES-DIEELPGELKALVNLKCLDLEYTGNLITIPR 291 (558)
Q Consensus 224 ~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~ 291 (558)
..+.+++.|++++|.++.+|. + ..+|+.|.+++| .++.+|..+. .+|++|++++|..+..+|.
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc
Confidence 345677777777777777762 2 235777777765 5666665442 4677777777655555553
No 50
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.93 E-value=8.7e-06 Score=87.18 Aligned_cols=130 Identities=22% Similarity=0.285 Sum_probs=93.5
Q ss_pred ccceEEEeeccccccc---CC-CCCCCCceEEEeecCCcccc-CchhhhCCCCCcEEEcCCCCCcccCcccCCCCCCCeE
Q 044595 181 EKARRLSLMHNQITNL---SE-IPTCPHLLTFFLNKNRFQMI-PNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHL 255 (558)
Q Consensus 181 ~~lr~L~l~~~~~~~l---~~-~~~~~~Lr~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L 255 (558)
.++++|++.+...-.- .. -.-+|.|++|.+.+-.+..- -...+.++++|+.||+++++++.+ .++++|++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 5788888877433211 11 24589999999998766422 123477899999999999999999 789999999999
Q ss_pred eccCCCCCCc--chhhhcCCCCcEEeccCCCCCCcC--chhh---hcCCCCCcEEEeeccCCC
Q 044595 256 DLSESDIEEL--PGELKALVNLKCLDLEYTGNLITI--PRQL---ISNLSRLHVLRMFGAGHN 311 (558)
Q Consensus 256 ~l~~~~l~~l--p~~i~~l~~L~~L~l~~~~~l~~l--p~~~---i~~l~~L~~L~l~~~~~~ 311 (558)
.+++-.+..- -..+..|++|++||++........ .... -..||+||.|+.++....
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 9988777643 246889999999999986443322 1111 135888888888866553
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.93 E-value=1.6e-05 Score=52.17 Aligned_cols=41 Identities=39% Similarity=0.575 Sum_probs=34.3
Q ss_pred CCCCeEeccCCCCCCcchhhhcCCCCcEEeccCCCCCCcCch
Q 044595 250 VSLQHLDLSESDIEELPGELKALVNLKCLDLEYTGNLITIPR 291 (558)
Q Consensus 250 ~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~ 291 (558)
++|++|++++|.++.+|..+++|++|++|++++| .++.++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence 4799999999999999988999999999999998 6776654
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.89 E-value=1.5e-06 Score=70.63 Aligned_cols=110 Identities=21% Similarity=0.336 Sum_probs=83.8
Q ss_pred cceEEEeecccccccCC----CCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcccCCCCCCCeEec
Q 044595 182 KARRLSLMHNQITNLSE----IPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHLDL 257 (558)
Q Consensus 182 ~lr~L~l~~~~~~~l~~----~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l 257 (558)
.+..++++++.+..++. +.....|...++++|.+.+.|+.+-.+++.+..|++++|.+..+|..+..++.|+.|++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 33445555555544332 34556777888888888888888777777888888888888888888888888899999
Q ss_pred cCCCCCCcchhhhcCCCCcEEeccCCCCCCcCchh
Q 044595 258 SESDIEELPGELKALVNLKCLDLEYTGNLITIPRQ 292 (558)
Q Consensus 258 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~ 292 (558)
+.|.+...|..+..|.+|-.|+..++ ....+|.+
T Consensus 108 ~~N~l~~~p~vi~~L~~l~~Lds~~n-a~~eid~d 141 (177)
T KOG4579|consen 108 RFNPLNAEPRVIAPLIKLDMLDSPEN-ARAEIDVD 141 (177)
T ss_pred ccCccccchHHHHHHHhHHHhcCCCC-ccccCcHH
Confidence 88888888888888888888888776 55556654
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.85 E-value=6.1e-06 Score=75.94 Aligned_cols=60 Identities=23% Similarity=0.250 Sum_probs=26.8
Q ss_pred CCCceEEEeecCCccccC--chhhhCCCCCcEEEcCCCCCcccCccc-CCCCCCCeEeccCCC
Q 044595 202 CPHLLTFFLNKNRFQMIP--NDFFQFMPSLKVLNLSYSKLTSLPLGI-SKLVSLQHLDLSESD 261 (558)
Q Consensus 202 ~~~Lr~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~l~~lp~~i-~~L~~L~~L~l~~~~ 261 (558)
+..++.+++.+|.+.... ..++.+|++|++|+++.|++...-.+. ..+.+|++|-|.++.
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~ 132 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTG 132 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCC
Confidence 445555555555554222 123455555555555555433211111 133455555555543
No 54
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.79 E-value=3.7e-06 Score=86.03 Aligned_cols=104 Identities=27% Similarity=0.396 Sum_probs=92.2
Q ss_pred CCCcccceEEEeecccccccCC-CCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcccCCCCCCCeE
Q 044595 177 VTGWEKARRLSLMHNQITNLSE-IPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHL 255 (558)
Q Consensus 177 ~~~~~~lr~L~l~~~~~~~l~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L 255 (558)
+..++++..+++.+|.+..+.. +..+++|++|++++|.+..+.. +..+..|+.|++++|.+..+. .+..+..|+.+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l 167 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDIS-GLESLKSLKLL 167 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchhcc-CCccchhhhcc
Confidence 5566899999999999999988 8899999999999999998876 678888999999999999884 57779999999
Q ss_pred eccCCCCCCcchh-hhcCCCCcEEeccCC
Q 044595 256 DLSESDIEELPGE-LKALVNLKCLDLEYT 283 (558)
Q Consensus 256 ~l~~~~l~~lp~~-i~~l~~L~~L~l~~~ 283 (558)
++++|.+..+... ...+.+|+.+.+.++
T Consensus 168 ~l~~n~i~~ie~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 168 DLSYNRIVDIENDELSELISLEELDLGGN 196 (414)
T ss_pred cCCcchhhhhhhhhhhhccchHHHhccCC
Confidence 9999999988754 588899999999987
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.77 E-value=3.8e-05 Score=66.94 Aligned_cols=100 Identities=29% Similarity=0.441 Sum_probs=73.5
Q ss_pred cceEEEeecccccccCCCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCccc--CcccCCCCCCCeEeccC
Q 044595 182 KARRLSLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSL--PLGISKLVSLQHLDLSE 259 (558)
Q Consensus 182 ~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l--p~~i~~L~~L~~L~l~~ 259 (558)
....+++++|++..+..++.++.|.+|.+.+|+++.+.+.+-..+++|..|.+.+|.+..+ -..+..++.|++|.+-+
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence 4556788888888888888888999999999999888888777777888889988877754 23456677888888877
Q ss_pred CCCCCcch----hhhcCCCCcEEecc
Q 044595 260 SDIEELPG----ELKALVNLKCLDLE 281 (558)
Q Consensus 260 ~~l~~lp~----~i~~l~~L~~L~l~ 281 (558)
|.+++.+. .+.++++|++||..
T Consensus 123 Npv~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 123 NPVEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred CchhcccCceeEEEEecCcceEeehh
Confidence 76664432 23445555555554
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.59 E-value=4.6e-05 Score=81.73 Aligned_cols=137 Identities=20% Similarity=0.207 Sum_probs=90.2
Q ss_pred CCCceEEEeecCCcc--ccCchhhhCCCCCcEEEcCCCCCc--ccCcccCCCCCCCeEeccCCCCCCcchhhhcCCCCcE
Q 044595 202 CPHLLTFFLNKNRFQ--MIPNDFFQFMPSLKVLNLSYSKLT--SLPLGISKLVSLQHLDLSESDIEELPGELKALVNLKC 277 (558)
Q Consensus 202 ~~~Lr~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~l~--~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~ 277 (558)
-.+|+.|+++|...- .-+..+...+|+|+.|.+.+-.+. .+-.-..++++|+.||+++++++.+ .++++|++|++
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 357888888875432 334444566889999998887554 2333455788899999999998888 58899999999
Q ss_pred EeccCCCCCCcCc-hhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhccCCCcceEEEEEccc
Q 044595 278 LDLEYTGNLITIP-RQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGLKSLEVISFTLRSS 349 (558)
Q Consensus 278 L~l~~~~~l~~lp-~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~ 349 (558)
|.+++-. +.... -..+.+|++|++|+++......... . ....++.-..|++|+-|+.+++..
T Consensus 200 L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~-i--------i~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 200 LSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTK-I--------IEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HhccCCC-CCchhhHHHHhcccCCCeeeccccccccchH-H--------HHHHHHhcccCccccEEecCCcch
Confidence 9887542 22211 1125688889999888765543110 0 223344455678888888875543
No 57
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.54 E-value=4.2e-05 Score=80.34 Aligned_cols=112 Identities=27% Similarity=0.171 Sum_probs=52.7
Q ss_pred CCCCCcEEEcCCC-CCcc--cCcccCCCCCCCeEeccCC--CCCCc----chhhhcCCCCcEEeccCCCCCCcCchhhhc
Q 044595 225 FMPSLKVLNLSYS-KLTS--LPLGISKLVSLQHLDLSES--DIEEL----PGELKALVNLKCLDLEYTGNLITIPRQLIS 295 (558)
Q Consensus 225 ~l~~L~~L~l~~~-~l~~--lp~~i~~L~~L~~L~l~~~--~l~~l----p~~i~~l~~L~~L~l~~~~~l~~lp~~~i~ 295 (558)
.++.|+.|.+.++ .++. +-.....+++|+.|+++++ .+... +.....+.+|+.|++.+|..+...--..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 3555666666655 3332 2233445566666666552 11111 122334456666666666433332222222
Q ss_pred -CCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhccCCCcceEEEEEccc
Q 044595 296 -NLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGLKSLEVISFTLRSS 349 (558)
Q Consensus 296 -~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~ 349 (558)
.+++|++|.+.+|.... ......-...+++|++|++.....
T Consensus 266 ~~c~~L~~L~l~~c~~lt-------------~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLT-------------DEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhCCCcceEccCCCCccc-------------hhHHHHHHHhcCcccEEeeecCcc
Confidence 25666666655554321 223333344455566666664443
No 58
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.52 E-value=4.8e-05 Score=70.21 Aligned_cols=226 Identities=14% Similarity=0.047 Sum_probs=119.7
Q ss_pred EEEeecCCccccC--chhhhCCCCCcEEEcCCCCCcc---cCcccCCCCCCCeEeccCCCCCCcchhh-hcCCCCcEEec
Q 044595 207 TFFLNKNRFQMIP--NDFFQFMPSLKVLNLSYSKLTS---LPLGISKLVSLQHLDLSESDIEELPGEL-KALVNLKCLDL 280 (558)
Q Consensus 207 ~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~l~~---lp~~i~~L~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~l 280 (558)
.+.+.++.+.... ..+-....+++.|||.+|.|+. +-.-..+|+.|++|+++.|.+...-.+. ..+.+|++|-+
T Consensus 49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVL 128 (418)
T KOG2982|consen 49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVL 128 (418)
T ss_pred hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEE
Confidence 4455555554332 2234567788999999998773 3333567899999999988765321122 35578888888
Q ss_pred cCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhccCCCcceEEEEEccchhHHHHhcccc
Q 044595 281 EYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGLKSLEVISFTLRSSHGLQMILSSDQ 360 (558)
Q Consensus 281 ~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~ 360 (558)
.|+.--..-.......++.++.|+++.+....+.... ...+. --+.+++++...+....+.......+
T Consensus 129 NgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd----------~c~e~--~s~~v~tlh~~~c~~~~w~~~~~l~r 196 (418)
T KOG2982|consen 129 NGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDD----------NCIED--WSTEVLTLHQLPCLEQLWLNKNKLSR 196 (418)
T ss_pred cCCCCChhhhhhhhhcchhhhhhhhccchhhhhcccc----------ccccc--cchhhhhhhcCCcHHHHHHHHHhHHh
Confidence 8874333333333567777788877766433221111 00110 11234444444444433333333333
Q ss_pred ccccccceeeeeccCCCcccccchhhhhhhhhhhhccccccceeEeccCCcccccccccccEEEEcCCCCCCCchh----
Q 044595 361 LRSCTRALSFQCFNDSTSLEVSALADLKQLKMLRIARSEILEELKMDCAGEVRQFVFHSLNKVEIYGCSKLKDLTF---- 436 (558)
Q Consensus 361 ~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~---- 436 (558)
.-.++.++-+..++-.+...-.+...+|.+-.|.+... .+.+ |..-..-..|+.|..|.+.+.+-+..+..
T Consensus 197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~-~ids----wasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err 271 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGAN-NIDS----WASVDALNGFPQLVDLRVSENPLSDPLRGGERR 271 (418)
T ss_pred hcccchheeeecCcccchhhcccCCCCCcchhhhhccc-cccc----HHHHHHHcCCchhheeeccCCcccccccCCcce
Confidence 33456655555543222222223344555556666544 2221 11111112378888888888765554432
Q ss_pred ---hhccCCCceEEEe
Q 044595 437 ---LVFAPNLKSIKVT 449 (558)
Q Consensus 437 ---l~~l~~L~~L~l~ 449 (558)
++.+++++.|+=+
T Consensus 272 ~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 272 FLLIARLTKVQVLNGS 287 (418)
T ss_pred EEEEeeccceEEecCc
Confidence 4677888877544
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.50 E-value=0.00028 Score=69.92 Aligned_cols=84 Identities=21% Similarity=0.409 Sum_probs=57.5
Q ss_pred CCcccceEEEeecccccccCCCCCCCCceEEEeec-CCccccCchhhhCCCCCcEEEcCCC-CCcccCcccCCCCCCCeE
Q 044595 178 TGWEKARRLSLMHNQITNLSEIPTCPHLLTFFLNK-NRFQMIPNDFFQFMPSLKVLNLSYS-KLTSLPLGISKLVSLQHL 255 (558)
Q Consensus 178 ~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L 255 (558)
..+.++++|+++++.+..+|.++ ++|++|.+.+ +.+..+|.. + ..+|++|++++| .+..+|.+ |+.|
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP~LP--~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L 117 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLPVLP--NELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGLPES------VRSL 117 (426)
T ss_pred HHhcCCCEEEeCCCCCcccCCCC--CCCcEEEccCCCCcccCCch-h--hhhhhheEccCcccccccccc------cceE
Confidence 34567889999988888777443 3699999885 555666654 2 368999999988 77777754 5556
Q ss_pred eccCCC---CCCcchhhhcC
Q 044595 256 DLSESD---IEELPGELKAL 272 (558)
Q Consensus 256 ~l~~~~---l~~lp~~i~~l 272 (558)
++.++. +..+|.++..|
T Consensus 118 ~L~~n~~~~L~~LPssLk~L 137 (426)
T PRK15386 118 EIKGSATDSIKNVPNGLTSL 137 (426)
T ss_pred EeCCCCCcccccCcchHhhe
Confidence 665543 55677655433
No 60
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.40 E-value=5.3e-06 Score=85.14 Aligned_cols=103 Identities=32% Similarity=0.323 Sum_probs=66.9
Q ss_pred CcccceEEEeecccccccCCCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcccCCCCCCCeEecc
Q 044595 179 GWEKARRLSLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHLDLS 258 (558)
Q Consensus 179 ~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~ 258 (558)
-++.++.|+++.|++.++..+..+++|+.|+++.|++..+|.--...++ |..|.+++|.++.+ .++.+|.+|+.||++
T Consensus 185 ll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL-~gie~LksL~~LDls 262 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL-RGIENLKSLYGLDLS 262 (1096)
T ss_pred HHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh-hhHHhhhhhhccchh
Confidence 3456677777777777776667777777777777777766654333344 77777777777766 456777777777777
Q ss_pred CCCCCCcc--hhhhcCCCCcEEeccCC
Q 044595 259 ESDIEELP--GELKALVNLKCLDLEYT 283 (558)
Q Consensus 259 ~~~l~~lp--~~i~~l~~L~~L~l~~~ 283 (558)
.|-+.... .-++.|..|+.|.+.||
T Consensus 263 yNll~~hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 263 YNLLSEHSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred HhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence 76444221 13455666677777765
No 61
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.33 E-value=5.9e-05 Score=79.19 Aligned_cols=239 Identities=21% Similarity=0.231 Sum_probs=130.7
Q ss_pred CCCCCCeEeccCC-CCCC--cchhhhcCCCCcEEeccC-CCCCCcCc---hhhhcCCCCCcEEEeeccCCCcccccccCC
Q 044595 248 KLVSLQHLDLSES-DIEE--LPGELKALVNLKCLDLEY-TGNLITIP---RQLISNLSRLHVLRMFGAGHNAFDEASKDS 320 (558)
Q Consensus 248 ~L~~L~~L~l~~~-~l~~--lp~~i~~l~~L~~L~l~~-~~~l~~lp---~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~ 320 (558)
.+++|+.|.+.++ .+.. +-......++|+.|++++ +......+ ......+++|+.|++..+...
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~i--------- 256 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLV--------- 256 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhcc---------
Confidence 3788999999888 6665 445677889999999988 33333322 222456788999999888742
Q ss_pred cccCCcchhHHHhcc-CCCcceEEEEEccchhHHHHhccccccccccceeeeeccCCCcccccc-hhhhhhhhhhhhccc
Q 044595 321 SLFGGGEFIVEELLG-LKSLEVISFTLRSSHGLQMILSSDQLRSCTRALSFQCFNDSTSLEVSA-LADLKQLKMLRIARS 398 (558)
Q Consensus 321 ~~~~~~~~~~~~L~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-l~~l~~L~~L~l~~~ 398 (558)
.+..+..+.. +++|+.|.+..+...+...+.........|+.|++++|....+..+.. ..++++|+.|.+..+
T Consensus 257 -----sd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 257 -----TDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL 331 (482)
T ss_pred -----CchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence 3344444443 778888885544433333444444444479999999888875543332 234666666665444
Q ss_pred cc---cceeEeccCCccccccc-ccccEEEEcCCCCCCCch--hhhccCCCc-eEEEecCchh-HHHhhcCccCCccccc
Q 044595 399 EI---LEELKMDCAGEVRQFVF-HSLNKVEIYGCSKLKDLT--FLVFAPNLK-SIKVTGSHAM-EAIISVGKFAEVPEVM 470 (558)
Q Consensus 399 ~~---l~~l~~~~~~~~~~~~~-~~L~~L~L~~~~~l~~l~--~l~~l~~L~-~L~l~~c~~l-~~~~~~~~~~~~~~~~ 470 (558)
.. ++......... .. ..+..+.+.+|+.++++. ..+ ..... .+.+.+|+.+ ..+.
T Consensus 332 ~~c~~l~~~~l~~~~~----~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~~~l~------------ 394 (482)
T KOG1947|consen 332 NGCPSLTDLSLSGLLT----LTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLTESLE------------ 394 (482)
T ss_pred CCCccHHHHHHHHhhc----cCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccchHHH------------
Confidence 32 22211110000 01 134444444444444422 112 22222 3445555554 1111
Q ss_pred ccCCCCcccceeeccCcccccccccCCCC--CCCcceEeeecCCCCcCC
Q 044595 471 ANLNPFAKLQNLEVIGAINLKSIYWKPLR--FPHLKTMSFFHCNKLKML 517 (558)
Q Consensus 471 ~~~~~~~~L~~L~l~~c~~L~~~~~~~~~--l~~L~~L~i~~C~~L~~l 517 (558)
.....+.+++.|.+..|.....-.....+ +..++.+.+.+|+....-
T Consensus 395 ~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 395 LRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLK 443 (482)
T ss_pred HHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccch
Confidence 12223334778888877766554332111 556677777777666543
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.22 E-value=4.9e-05 Score=61.99 Aligned_cols=87 Identities=26% Similarity=0.424 Sum_probs=77.5
Q ss_pred ccceEEEeecccccccCC-C-CCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcccCCCCCCCeEecc
Q 044595 181 EKARRLSLMHNQITNLSE-I-PTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHLDLS 258 (558)
Q Consensus 181 ~~lr~L~l~~~~~~~l~~-~-~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~ 258 (558)
.++..+++++|.+.++|. + ..++-+.++++.+|.+..+|.+ +..++.||.|+++.|++...|..|..|.+|-+|+..
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccCccccchHHHHHHHhHHHhcCC
Confidence 467788999999998764 2 4566889999999999999999 888999999999999999999999999999999999
Q ss_pred CCCCCCcchh
Q 044595 259 ESDIEELPGE 268 (558)
Q Consensus 259 ~~~l~~lp~~ 268 (558)
++.+.++|-.
T Consensus 132 ~na~~eid~d 141 (177)
T KOG4579|consen 132 ENARAEIDVD 141 (177)
T ss_pred CCccccCcHH
Confidence 9988888866
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.13 E-value=0.00028 Score=64.36 Aligned_cols=81 Identities=31% Similarity=0.423 Sum_probs=44.9
Q ss_pred cccceEEEeecccccccCCCCCCCCceEEEeecC--Ccc-ccCchhhhCCCCCcEEEcCCCCCccc--CcccCCCCCCCe
Q 044595 180 WEKARRLSLMHNQITNLSEIPTCPHLLTFFLNKN--RFQ-MIPNDFFQFMPSLKVLNLSYSKLTSL--PLGISKLVSLQH 254 (558)
Q Consensus 180 ~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~--~~~-~~~~~~~~~l~~L~~L~l~~~~l~~l--p~~i~~L~~L~~ 254 (558)
+..+..+++.+..++.+..++.+++|+.|.++.| ++. .++. ...++++|++|++++|+++.+ -.....+.+|..
T Consensus 42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred ccchhhhhhhccceeecccCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence 3456666666666666666777777777777766 332 2222 234456677777777655532 012333444445
Q ss_pred EeccCCC
Q 044595 255 LDLSESD 261 (558)
Q Consensus 255 L~l~~~~ 261 (558)
|++..|.
T Consensus 121 Ldl~n~~ 127 (260)
T KOG2739|consen 121 LDLFNCS 127 (260)
T ss_pred hhcccCC
Confidence 5555443
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.97 E-value=0.001 Score=58.33 Aligned_cols=105 Identities=21% Similarity=0.276 Sum_probs=71.9
Q ss_pred CCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcccCC-CCCCCeEeccCCCCCCcc--hhhhcCCCCcEEe
Q 044595 203 PHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISK-LVSLQHLDLSESDIEELP--GELKALVNLKCLD 279 (558)
Q Consensus 203 ~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~-L~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~ 279 (558)
...-.+++.+|.+..++. |..++.|.+|.+..|.|+.+-..+.. +++|..|.+.+|++.++- ..+..+++|++|.
T Consensus 42 d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 345667888888877665 77788888888888888877555544 466888888888777553 2355667888888
Q ss_pred ccCCCCCCc---CchhhhcCCCCCcEEEeeccCC
Q 044595 280 LEYTGNLIT---IPRQLISNLSRLHVLRMFGAGH 310 (558)
Q Consensus 280 l~~~~~l~~---lp~~~i~~l~~L~~L~l~~~~~ 310 (558)
+-+|. +.. .-.-++.++++|++|+..++..
T Consensus 120 ll~Np-v~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 120 LLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred ecCCc-hhcccCceeEEEEecCcceEeehhhhhH
Confidence 77763 222 2222356778888888776654
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.83 E-value=0.00011 Score=67.28 Aligned_cols=103 Identities=26% Similarity=0.256 Sum_probs=69.0
Q ss_pred CCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcccCCCCCCCeEeccCCCCCCcch--hhhcCCCCcEEec
Q 044595 203 PHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHLDLSESDIEELPG--ELKALVNLKCLDL 280 (558)
Q Consensus 203 ~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l 280 (558)
.+.+.|++.|+.+..+. ++.+|+.|.+|.|+-|.|+.+ ..+..+++|+.|.|+.|.|..+-. -+.++++|+.|-|
T Consensus 19 ~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 34455666666666554 367788888888888888777 457778888888888887775532 3566777788877
Q ss_pred cCCCCCCcCc----hhhhcCCCCCcEEEeecc
Q 044595 281 EYTGNLITIP----RQLISNLSRLHVLRMFGA 308 (558)
Q Consensus 281 ~~~~~l~~lp----~~~i~~l~~L~~L~l~~~ 308 (558)
..|.....-+ ..++.-|++|+.|+-..+
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~V 127 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLDNVPV 127 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhccCccc
Confidence 7665444433 234667888888776544
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.63 E-value=0.0011 Score=60.65 Aligned_cols=110 Identities=27% Similarity=0.292 Sum_probs=75.3
Q ss_pred CCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCC--CCc-ccCcccCCCCCCCeEeccCCCCCCcc--hhhhcCCCC
Q 044595 201 TCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYS--KLT-SLPLGISKLVSLQHLDLSESDIEELP--GELKALVNL 275 (558)
Q Consensus 201 ~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~--~l~-~lp~~i~~L~~L~~L~l~~~~l~~lp--~~i~~l~~L 275 (558)
.+..|..+.+.+..++.+.. +..|++|++|.++.| .+. .++...-.+++|++|++++|++..+. ..+..+.+|
T Consensus 41 ~~~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred cccchhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 34455566666666655544 566889999999999 444 45444556699999999999776421 245677888
Q ss_pred cEEeccCCCC--CCcCchhhhcCCCCCcEEEeeccCCCc
Q 044595 276 KCLDLEYTGN--LITIPRQLISNLSRLHVLRMFGAGHNA 312 (558)
Q Consensus 276 ~~L~l~~~~~--l~~lp~~~i~~l~~L~~L~l~~~~~~~ 312 (558)
..|++..|.. +...-..++.-+++|++|+-.++....
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~E 157 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGEE 157 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhccccccccCCcc
Confidence 8999988842 233334556678889988887776543
No 67
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.47 E-value=0.0021 Score=58.88 Aligned_cols=20 Identities=10% Similarity=0.067 Sum_probs=10.6
Q ss_pred HHHhccCCCcceEEEEEccc
Q 044595 330 VEELLGLKSLEVISFTLRSS 349 (558)
Q Consensus 330 ~~~L~~l~~L~~L~l~~~~~ 349 (558)
...+....+|+++.+..++.
T Consensus 178 a~~l~sh~~lk~vki~qNgI 197 (388)
T COG5238 178 AALLESHENLKEVKIQQNGI 197 (388)
T ss_pred HHHHHhhcCceeEEeeecCc
Confidence 33444445666666655543
No 68
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.07 E-value=0.0063 Score=55.91 Aligned_cols=44 Identities=25% Similarity=0.249 Sum_probs=25.7
Q ss_pred hhcCCCCcEEeccCCCCCCcCch---hhhcCCCCCcEEEeeccCCCc
Q 044595 269 LKALVNLKCLDLEYTGNLITIPR---QLISNLSRLHVLRMFGAGHNA 312 (558)
Q Consensus 269 i~~l~~L~~L~l~~~~~l~~lp~---~~i~~l~~L~~L~l~~~~~~~ 312 (558)
+-++++|+..+++.|-.-...|+ +.|++-+.|.||.+.+|+.-.
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp 134 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGP 134 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCc
Confidence 34556666666666644444443 235666777777777765543
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.90 E-value=0.0032 Score=34.21 Aligned_cols=19 Identities=47% Similarity=0.611 Sum_probs=10.2
Q ss_pred CcEEEcCCCCCcccCcccC
Q 044595 229 LKVLNLSYSKLTSLPLGIS 247 (558)
Q Consensus 229 L~~L~l~~~~l~~lp~~i~ 247 (558)
|++|++++|.++.+|.+++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555555555555555443
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.85 E-value=0.0014 Score=57.45 Aligned_cols=68 Identities=24% Similarity=0.470 Sum_probs=40.2
Q ss_pred hhhhhhhhhhhhccccccceeEeccCCcccccccccccEEEEcCCCCCCC--chhhhccCCCceEEEecCchhH
Q 044595 384 LADLKQLKMLRIARSEILEELKMDCAGEVRQFVFHSLNKVEIYGCSKLKD--LTFLVFAPNLKSIKVTGSHAME 455 (558)
Q Consensus 384 l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~--l~~l~~l~~L~~L~l~~c~~l~ 455 (558)
+..++.++.|.+.+|..+.+........ ..++|+.|+|++|+++++ +.++..+++|+.|.|.+-+.+.
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~----~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGG----LAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcc----cccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhh
Confidence 4445556666666665544433222221 367777777777777766 5566677777777776655443
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.66 E-value=0.00071 Score=62.10 Aligned_cols=97 Identities=29% Similarity=0.278 Sum_probs=63.3
Q ss_pred ccceEEEeecccccccCCCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccC--cccCCCCCCCeEecc
Q 044595 181 EKARRLSLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLP--LGISKLVSLQHLDLS 258 (558)
Q Consensus 181 ~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~l~ 258 (558)
.+++.|+..++.+.+++-...|+.|++|.|+-|.+..+.+ +..++.|+.|+|+.|.|..+- .-+.++++|++|-|.
T Consensus 19 ~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 4566677777777777666777777777777777776655 667777777777777666552 234567777777776
Q ss_pred CCCCC-Ccc-----hhhhcCCCCcEEe
Q 044595 259 ESDIE-ELP-----GELKALVNLKCLD 279 (558)
Q Consensus 259 ~~~l~-~lp-----~~i~~l~~L~~L~ 279 (558)
.|... .-+ ..+..|++|+.||
T Consensus 97 ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 97 ENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCCcccccchhHHHHHHHHcccchhcc
Confidence 65222 111 2355667777665
No 72
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.38 E-value=0.053 Score=45.16 Aligned_cols=116 Identities=19% Similarity=0.347 Sum_probs=41.3
Q ss_pred CCcccceEEEeecccccccC--CCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCc-ccCCCCCCCe
Q 044595 178 TGWEKARRLSLMHNQITNLS--EIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPL-GISKLVSLQH 254 (558)
Q Consensus 178 ~~~~~lr~L~l~~~~~~~l~--~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~ 254 (558)
..+.+++.+.+.. .+..+. .+..+++|+.+.+..+ +..++...|..++.|+.+.+.. .+..++. .+..+.+|+.
T Consensus 9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred hCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccc
Confidence 3344555555542 333332 2445555666665543 5555555556565566666654 3333322 3344555666
Q ss_pred EeccCCCCCCcchh-hhcCCCCcEEeccCCCCCCcCchhhhcCCCCC
Q 044595 255 LDLSESDIEELPGE-LKALVNLKCLDLEYTGNLITIPRQLISNLSRL 300 (558)
Q Consensus 255 L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L 300 (558)
+++..+ +..++.. +... +|+.+.+.. .+..++...+.+.++|
T Consensus 86 i~~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 86 IDIPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKL 128 (129)
T ss_dssp EEETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG-----
T ss_pred cccCcc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccC
Confidence 655443 3333322 3333 555555543 3344444444444433
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.20 E-value=0.0052 Score=33.38 Aligned_cols=20 Identities=30% Similarity=0.627 Sum_probs=11.5
Q ss_pred CCCeEeccCCCCCCcchhhh
Q 044595 251 SLQHLDLSESDIEELPGELK 270 (558)
Q Consensus 251 ~L~~L~l~~~~l~~lp~~i~ 270 (558)
+|++|++++|.++.+|.+++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 35666666666666655443
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.68 E-value=0.019 Score=28.88 Aligned_cols=17 Identities=35% Similarity=0.677 Sum_probs=10.0
Q ss_pred CCcceEeeecCCCCcCCC
Q 044595 501 PHLKTMSFFHCNKLKMLP 518 (558)
Q Consensus 501 ~~L~~L~i~~C~~L~~lP 518 (558)
++|+.|++++|. |+++|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 467888888875 77776
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.92 E-value=0.037 Score=27.80 Aligned_cols=14 Identities=57% Similarity=0.809 Sum_probs=4.7
Q ss_pred CcEEEcCCCCCccc
Q 044595 229 LKVLNLSYSKLTSL 242 (558)
Q Consensus 229 L~~L~l~~~~l~~l 242 (558)
|++|++++|.++.+
T Consensus 3 L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 3 LRTLDLSNNRLTSL 16 (17)
T ss_dssp -SEEEETSS--SSE
T ss_pred cCEEECCCCCCCCC
Confidence 44444444444333
No 76
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.34 E-value=0.22 Score=41.40 Aligned_cols=102 Identities=23% Similarity=0.337 Sum_probs=59.2
Q ss_pred CCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCc-ccCCCCCCCeEeccCCCCCCcchh-hhcCCCCc
Q 044595 199 IPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPL-GISKLVSLQHLDLSESDIEELPGE-LKALVNLK 276 (558)
Q Consensus 199 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~ 276 (558)
+..+.+|+.+.+.. .+..++...|..+..|+.+.+.++ +..++. .+.++.+|+.+.+.. .+..++.. +....+|+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 56677888888774 577888888888888999988875 665543 466777888888865 55555443 45578888
Q ss_pred EEeccCCCCCCcCchhhhcCCCCCcEEEee
Q 044595 277 CLDLEYTGNLITIPRQLISNLSRLHVLRMF 306 (558)
Q Consensus 277 ~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~ 306 (558)
.+.+.. .+..++...+.+. +|+.+.+.
T Consensus 85 ~i~~~~--~~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 85 NIDIPS--NITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp EEEETT--T-BEEHTTTTTT--T--EEE-T
T ss_pred ccccCc--cccEEchhhhcCC-CceEEEEC
Confidence 888865 3666776667776 77777764
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.20 E-value=0.0019 Score=57.85 Aligned_cols=84 Identities=18% Similarity=0.198 Sum_probs=57.4
Q ss_pred CCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcccCCCCCCCeEeccCCCCCCcchhhhcCCCCcEE
Q 044595 199 IPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHLDLSESDIEELPGELKALVNLKCL 278 (558)
Q Consensus 199 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L 278 (558)
+..+....+|+++.|++..+... |+.+..|..|+++.+.+..+|..++.+..++.+++..|..+..|.+.+.+++++.+
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hhccceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence 44555666667766666655554 55566667777777777777777777777777777777777777777777777777
Q ss_pred eccCC
Q 044595 279 DLEYT 283 (558)
Q Consensus 279 ~l~~~ 283 (558)
+..++
T Consensus 117 e~k~~ 121 (326)
T KOG0473|consen 117 EQKKT 121 (326)
T ss_pred hhccC
Confidence 77665
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.71 E-value=0.06 Score=47.55 Aligned_cols=35 Identities=20% Similarity=0.203 Sum_probs=16.5
Q ss_pred cccceeeeeccCCCcccccchhhhhhhhhhhhccc
Q 044595 364 CTRALSFQCFNDSTSLEVSALADLKQLKMLRIARS 398 (558)
Q Consensus 364 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 398 (558)
+|+.|++++|..+++-.+..+..+++|+.|.+.+.
T Consensus 152 ~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 152 SLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDL 186 (221)
T ss_pred chheeeccCCCeechhHHHHHHHhhhhHHHHhcCc
Confidence 44444444445444444444444445555544443
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.23 E-value=0.0072 Score=54.21 Aligned_cols=91 Identities=23% Similarity=0.189 Sum_probs=77.8
Q ss_pred ccCchhhhCCCCCcEEEcCCCCCcccCcccCCCCCCCeEeccCCCCCCcchhhhcCCCCcEEeccCCCCCCcCchhhhcC
Q 044595 217 MIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHLDLSESDIEELPGELKALVNLKCLDLEYTGNLITIPRQLISN 296 (558)
Q Consensus 217 ~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~ 296 (558)
.+|-.-+...+..++||++.+.+..+-..++.++.|..|+++.+.+..+|.+.+.+..++++++..| +....|.+ .++
T Consensus 32 ~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s-~~k 109 (326)
T KOG0473|consen 32 EIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKS-QKK 109 (326)
T ss_pred ccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCcc-ccc
Confidence 3443335567889999999998888888888899999999999999999999999999999999876 78899988 899
Q ss_pred CCCCcEEEeeccC
Q 044595 297 LSRLHVLRMFGAG 309 (558)
Q Consensus 297 l~~L~~L~l~~~~ 309 (558)
++.++.++.-++.
T Consensus 110 ~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 110 EPHPKKNEQKKTE 122 (326)
T ss_pred cCCcchhhhccCc
Confidence 9999998886654
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.84 E-value=0.33 Score=27.37 Aligned_cols=19 Identities=37% Similarity=0.615 Sum_probs=9.7
Q ss_pred CCCCeEeccCCCCCCcchh
Q 044595 250 VSLQHLDLSESDIEELPGE 268 (558)
Q Consensus 250 ~~L~~L~l~~~~l~~lp~~ 268 (558)
.+|++|++.+|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 3455555555555555543
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.84 E-value=0.33 Score=27.37 Aligned_cols=19 Identities=37% Similarity=0.615 Sum_probs=9.7
Q ss_pred CCCCeEeccCCCCCCcchh
Q 044595 250 VSLQHLDLSESDIEELPGE 268 (558)
Q Consensus 250 ~~L~~L~l~~~~l~~lp~~ 268 (558)
.+|++|++.+|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 3455555555555555543
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.70 E-value=0.46 Score=26.77 Aligned_cols=21 Identities=48% Similarity=0.830 Sum_probs=16.0
Q ss_pred CCCCcEEEcCCCCCcccCccc
Q 044595 226 MPSLKVLNLSYSKLTSLPLGI 246 (558)
Q Consensus 226 l~~L~~L~l~~~~l~~lp~~i 246 (558)
+.+|++|++++|.++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 457888888888888887654
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.70 E-value=0.46 Score=26.77 Aligned_cols=21 Identities=48% Similarity=0.830 Sum_probs=16.0
Q ss_pred CCCCcEEEcCCCCCcccCccc
Q 044595 226 MPSLKVLNLSYSKLTSLPLGI 246 (558)
Q Consensus 226 l~~L~~L~l~~~~l~~lp~~i 246 (558)
+.+|++|++++|.++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 457888888888888887654
No 84
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=84.66 E-value=0.63 Score=26.27 Aligned_cols=17 Identities=18% Similarity=0.557 Sum_probs=12.6
Q ss_pred CCCcceEeeecCCCCcC
Q 044595 500 FPHLKTMSFFHCNKLKM 516 (558)
Q Consensus 500 l~~L~~L~i~~C~~L~~ 516 (558)
+|+|++|++++|++++.
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 46788888888887763
No 85
>PRK04841 transcriptional regulator MalT; Provisional
Probab=79.16 E-value=9.6 Score=43.61 Aligned_cols=123 Identities=15% Similarity=0.115 Sum_probs=76.7
Q ss_pred HHHHHHHHHcCCchhHHHHHHHHHcCCCChhhHHHHHHHHhccCCCCCCCccchhhhHHhc-ccCCCCcchhhhhccccc
Q 044595 6 QLAQAAARECDGLPLALITIGRAMACKKTPDEWIYDIEVLRTSSSQFPGLGNEVYPLLKFS-YDRLPSDTIKSCLLYCSL 84 (558)
Q Consensus 6 ~i~~~iv~~c~GlPLai~~ig~~L~~~~~~~~W~~~~~~l~~~~~~~~~~~~~i~~~L~~S-Y~~L~~~~lk~cfl~~~~ 84 (558)
+...+|.+.|+|.|+++..++..+....... ......+... ....+...+.-. ++.||++ .+..+...|+
T Consensus 206 ~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~--~~~~~~~~~~------~~~~~~~~l~~~v~~~l~~~-~~~~l~~~a~ 276 (903)
T PRK04841 206 AESSRLCDDVEGWATALQLIALSARQNNSSL--HDSARRLAGI------NASHLSDYLVEEVLDNVDLE-TRHFLLRCSV 276 (903)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCCch--hhhhHhhcCC------CchhHHHHHHHHHHhcCCHH-HHHHHHHhcc
Confidence 3457899999999999999988775432100 1111111100 012344444333 8899996 9999999999
Q ss_pred CCCCCccCHHHHHHHHHHcCccccCCchhhHHhHHHHHHHHHHhccccc-CC--CCceehhhHHHHHHHHHH
Q 044595 85 YPEDYCISKEKLIDCWIGEGFLTERDRIGEQKEGYHILGILLHACLLEE-GG--DGEVKMHDVIRDMAIWIA 153 (558)
Q Consensus 85 fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~~~~L~~~~l~~~-~~--~~~~~mhdl~~~~~~~~~ 153 (558)
++ .|+.+ +.. .+.. .+.+...++.|...+++.. .+ ...|+.|++++++.....
T Consensus 277 ~~---~~~~~-l~~-----~l~~-------~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 277 LR---SMNDA-LIV-----RVTG-------EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred cc---cCCHH-HHH-----HHcC-------CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 87 33422 221 1111 1234567999999998653 22 347899999999987654
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=71.03 E-value=3 Score=23.57 Aligned_cols=17 Identities=65% Similarity=0.741 Sum_probs=9.1
Q ss_pred CCcEEEcCCCCCcccCc
Q 044595 228 SLKVLNLSYSKLTSLPL 244 (558)
Q Consensus 228 ~L~~L~l~~~~l~~lp~ 244 (558)
+|++|++++|.++.+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 45555555555555553
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=62.70 E-value=6.5 Score=22.25 Aligned_cols=14 Identities=43% Similarity=0.719 Sum_probs=7.8
Q ss_pred CCCCeEeccCCCCC
Q 044595 250 VSLQHLDLSESDIE 263 (558)
Q Consensus 250 ~~L~~L~l~~~~l~ 263 (558)
.+|+.|+++.|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45555666555554
No 88
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=56.92 E-value=5.9 Score=21.60 Aligned_cols=14 Identities=43% Similarity=0.771 Sum_probs=5.7
Q ss_pred CCCcEEEcCCCCCc
Q 044595 227 PSLKVLNLSYSKLT 240 (558)
Q Consensus 227 ~~L~~L~l~~~~l~ 240 (558)
++|+.|++++|.++
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34555555555443
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=48.16 E-value=16 Score=20.94 Aligned_cols=13 Identities=54% Similarity=0.641 Sum_probs=7.2
Q ss_pred CCcEEEcCCCCCc
Q 044595 228 SLKVLNLSYSKLT 240 (558)
Q Consensus 228 ~L~~L~l~~~~l~ 240 (558)
+|++|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555666655543
No 90
>PF12221 HflK_N: Bacterial membrane protein N terminal; InterPro: IPR020980 HflK is a bacterial membrane protein which is thought, together with the HflC protein, to form a membrane protease complex whose activity is modulated by the GTPase HflX []. This entry represents the N-terminal, membrane-spanning, region of of HflK responsible for anchoring the protein in the bacterial membrane. It is often found in association with PF01145 from PFAM.
Probab=36.00 E-value=33 Score=22.03 Aligned_cols=18 Identities=28% Similarity=0.438 Sum_probs=15.8
Q ss_pred CccHHHHHHHHHHHcCCc
Q 044595 1 DPDILQLAQAAARECDGL 18 (558)
Q Consensus 1 ~~~l~~i~~~iv~~c~Gl 18 (558)
||||+++-+++-++.+|+
T Consensus 20 PPDLdel~r~l~~kl~~~ 37 (42)
T PF12221_consen 20 PPDLDELFRKLQDKLGGL 37 (42)
T ss_pred CCCHHHHHHHHHHHHhcc
Confidence 789999999999988875
No 91
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=31.78 E-value=1.6 Score=45.35 Aligned_cols=157 Identities=22% Similarity=0.158 Sum_probs=89.5
Q ss_pred ccceEEEeeccccccc------CCCCCC-CCceEEEeecCCccc-----cCchhhhCCCCCcEEEcCCCCCc-----ccC
Q 044595 181 EKARRLSLMHNQITNL------SEIPTC-PHLLTFFLNKNRFQM-----IPNDFFQFMPSLKVLNLSYSKLT-----SLP 243 (558)
Q Consensus 181 ~~lr~L~l~~~~~~~l------~~~~~~-~~Lr~L~l~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~l~-----~lp 243 (558)
..+..|++.+|.+... ..+... ..+++|.+..+.+.. +... +....+++.++++.|.+. .++
T Consensus 115 ~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~-L~~~~~l~~l~l~~n~l~~~g~~~l~ 193 (478)
T KOG4308|consen 115 PTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV-LEKNEHLTELDLSLNGLIELGLLVLS 193 (478)
T ss_pred ccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH-HhcccchhHHHHHhcccchhhhHHHh
Confidence 4455566766666531 112222 456666666555542 3333 444778888888888653 223
Q ss_pred ccc----CCCCCCCeEeccCCCCCCc-----chhhhcCCC-CcEEeccCCCCCCc----CchhhhcCC-CCCcEEEeecc
Q 044595 244 LGI----SKLVSLQHLDLSESDIEEL-----PGELKALVN-LKCLDLEYTGNLIT----IPRQLISNL-SRLHVLRMFGA 308 (558)
Q Consensus 244 ~~i----~~L~~L~~L~l~~~~l~~l-----p~~i~~l~~-L~~L~l~~~~~l~~----lp~~~i~~l-~~L~~L~l~~~ 308 (558)
..+ ....++++|++.+|.++.. -..+...++ +..|++..|..-+. +.+. +..+ ..++++++..+
T Consensus 194 ~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~-l~~~~~~l~~l~l~~n 272 (478)
T KOG4308|consen 194 QALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPC-LSVLSETLRVLDLSRN 272 (478)
T ss_pred hhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHH-hcccchhhhhhhhhcC
Confidence 333 3477888888888876621 123344455 66678777633222 1111 3444 56678888777
Q ss_pred CCCcccccccCCcccCCcchhHHHhccCCCcceEEEEEccch
Q 044595 309 GHNAFDEASKDSSLFGGGEFIVEELLGLKSLEVISFTLRSSH 350 (558)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~ 350 (558)
...... .....+.+..+..++++.+..+...
T Consensus 273 si~~~~-----------~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 273 SITEKG-----------VRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred Cccccc-----------hHHHHHHHhhhHHHHHhhcccCccc
Confidence 665321 3345666677778888888766554
No 92
>PF14050 Nudc_N: N-terminal conserved domain of Nudc.
Probab=23.02 E-value=1.8e+02 Score=20.63 Aligned_cols=30 Identities=20% Similarity=0.187 Sum_probs=26.8
Q ss_pred cHHHHHHHHHHHcCCchhHHHHHHHHHcCC
Q 044595 3 DILQLAQAAARECDGLPLALITIGRAMACK 32 (558)
Q Consensus 3 ~l~~i~~~iv~~c~GlPLai~~ig~~L~~~ 32 (558)
.+..+--.|++.|+|++=-+-++-+.|+.+
T Consensus 2 ~~D~~ll~iaq~~~~I~~~Ld~fF~FL~Rk 31 (62)
T PF14050_consen 2 RFDNMLLSIAQQCGGIEDFLDTFFSFLRRK 31 (62)
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Confidence 466778889999999999999999999975
No 93
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=20.62 E-value=6.8e+02 Score=24.46 Aligned_cols=107 Identities=12% Similarity=0.093 Sum_probs=50.8
Q ss_pred HHHHHHHHHcCCchhHHHHHHHHHcCCCChhhHHHHHHHHhccCCCCCCCccchhhhHHhcccCCCCcchhhhhc-cccc
Q 044595 6 QLAQAAARECDGLPLALITIGRAMACKKTPDEWIYDIEVLRTSSSQFPGLGNEVYPLLKFSYDRLPSDTIKSCLL-YCSL 84 (558)
Q Consensus 6 ~i~~~iv~~c~GlPLai~~ig~~L~~~~~~~~W~~~~~~l~~~~~~~~~~~~~i~~~L~~SY~~L~~~~lk~cfl-~~~~ 84 (558)
+....|++.|+|.|-.+..+...+. .|..+. ....-. ..........+...|..|++. .+..+. ....
T Consensus 203 ~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~---~~~~I~-~~~v~~~l~~~~~~~~~l~~~-~~~~l~~~~~~ 271 (328)
T PRK00080 203 EGALEIARRSRGTPRIANRLLRRVR------DFAQVK---GDGVIT-KEIADKALDMLGVDELGLDEM-DRKYLRTIIEK 271 (328)
T ss_pred HHHHHHHHHcCCCchHHHHHHHHHH------HHHHHc---CCCCCC-HHHHHHHHHHhCCCcCCCCHH-HHHHHHHHHHH
Confidence 4577899999999954444443221 121110 000000 000112334456667788774 555553 5555
Q ss_pred CCCCCccCHHHHHHHHHHcCccccCCchhhHHhHHHHHH-HHHHhcccccCC
Q 044595 85 YPEDYCISKEKLIDCWIGEGFLTERDRIGEQKEGYHILG-ILLHACLLEEGG 135 (558)
Q Consensus 85 fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~~~-~L~~~~l~~~~~ 135 (558)
|+.+ .+..+.+.... .. ..+.++..++ .|++.+|++...
T Consensus 272 ~~~~-~~~~~~~a~~l------g~-----~~~~~~~~~e~~Li~~~li~~~~ 311 (328)
T PRK00080 272 FGGG-PVGLDTLAAAL------GE-----ERDTIEDVYEPYLIQQGFIQRTP 311 (328)
T ss_pred cCCC-ceeHHHHHHHH------CC-----CcchHHHHhhHHHHHcCCcccCC
Confidence 6655 34444432211 11 1123333444 678888876543
Done!