Query 044595
Match_columns 558
No_of_seqs 353 out of 3165
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 08:04:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044595.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044595hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fmz_A Internalin; leucine ric 99.9 1.7E-25 5.7E-30 223.1 18.9 290 176-519 39-328 (347)
2 4fmz_A Internalin; leucine ric 99.9 2.6E-24 8.8E-29 214.4 21.6 293 167-512 52-344 (347)
3 1o6v_A Internalin A; bacterial 99.9 4.7E-23 1.6E-27 213.7 22.4 259 170-452 57-320 (466)
4 2z81_A CD282 antigen, TOLL-lik 99.9 3.7E-23 1.3E-27 219.4 21.3 131 181-311 26-161 (549)
5 2id5_A Lingo-1, leucine rich r 99.9 6.7E-23 2.3E-27 213.4 22.6 276 181-520 32-314 (477)
6 1o6v_A Internalin A; bacterial 99.9 5.3E-23 1.8E-27 213.3 21.5 306 179-512 44-364 (466)
7 3o6n_A APL1; leucine-rich repe 99.9 2.9E-23 9.9E-28 210.3 18.9 301 179-534 43-349 (390)
8 3v47_A TOLL-like receptor 5B a 99.9 1.4E-22 4.9E-27 209.6 22.7 335 164-521 15-390 (455)
9 4ecn_A Leucine-rich repeat pro 99.9 1.5E-23 5.3E-28 229.5 15.0 322 176-534 443-837 (876)
10 2id5_A Lingo-1, leucine rich r 99.9 1.9E-22 6.3E-27 210.1 19.7 275 175-488 50-331 (477)
11 3o6n_A APL1; leucine-rich repe 99.9 1.6E-22 5.3E-27 204.9 18.5 282 201-533 43-327 (390)
12 3vq2_A TLR4, TOLL-like recepto 99.9 4.5E-22 1.5E-26 213.6 23.0 145 166-312 18-167 (606)
13 3vq2_A TLR4, TOLL-like recepto 99.9 7.2E-23 2.4E-27 219.8 16.1 108 176-283 51-163 (606)
14 3t6q_A CD180 antigen; protein- 99.9 2.3E-22 8E-27 215.8 19.8 307 181-512 33-411 (606)
15 4eco_A Uncharacterized protein 99.9 2.9E-23 9.8E-28 223.2 12.3 322 177-534 202-597 (636)
16 3oja_B Anopheles plasmodium-re 99.9 8.2E-23 2.8E-27 218.4 15.8 131 180-311 50-184 (597)
17 2z7x_B TOLL-like receptor 1, v 99.9 1E-21 3.5E-26 206.8 23.1 124 181-310 21-150 (520)
18 2z63_A TOLL-like receptor 4, v 99.9 1.8E-22 6E-27 215.2 17.3 124 176-300 47-175 (570)
19 3t6q_A CD180 antigen; protein- 99.9 1.1E-21 3.9E-26 210.5 22.5 267 175-452 51-387 (606)
20 3bz5_A Internalin-J, INLJ; leu 99.9 2.1E-22 7E-27 207.4 15.9 285 177-517 60-354 (457)
21 2ft3_A Biglycan; proteoglycan, 99.9 4.4E-22 1.5E-26 196.9 17.5 295 181-512 33-331 (332)
22 4eco_A Uncharacterized protein 99.9 1.1E-22 3.7E-27 218.8 13.4 230 199-453 202-469 (636)
23 3oja_B Anopheles plasmodium-re 99.9 3.6E-22 1.2E-26 213.4 16.8 294 201-534 49-355 (597)
24 3rgz_A Protein brassinosteroid 99.9 2E-22 6.7E-27 221.7 13.8 130 177-309 196-329 (768)
25 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.7E-21 1.3E-25 204.3 22.4 138 166-310 38-181 (562)
26 4ecn_A Leucine-rich repeat pro 99.9 3.9E-22 1.3E-26 218.4 15.2 230 199-453 444-709 (876)
27 1xku_A Decorin; proteoglycan, 99.9 3.3E-21 1.1E-25 190.5 19.7 243 181-453 31-275 (330)
28 3v47_A TOLL-like receptor 5B a 99.9 1.8E-21 6.1E-26 201.4 17.8 322 175-518 48-412 (455)
29 3j0a_A TOLL-like receptor 5; m 99.9 1.6E-20 5.6E-25 208.6 26.1 147 162-311 7-161 (844)
30 3rgz_A Protein brassinosteroid 99.9 3E-22 1E-26 220.3 10.9 306 174-519 216-556 (768)
31 2z81_A CD282 antigen, TOLL-lik 99.9 4.5E-21 1.5E-25 203.3 19.5 133 175-308 44-182 (549)
32 4fcg_A Uncharacterized protein 99.9 1E-21 3.6E-26 193.4 13.5 105 202-308 80-193 (328)
33 2z63_A TOLL-like receptor 4, v 99.9 2.6E-21 8.7E-26 206.2 17.0 146 164-312 12-163 (570)
34 3bz5_A Internalin-J, INLJ; leu 99.9 3.7E-21 1.3E-25 198.0 17.4 268 176-495 37-304 (457)
35 2z7x_B TOLL-like receptor 1, v 99.9 6.1E-21 2.1E-25 200.8 19.5 127 385-520 321-462 (520)
36 1ziw_A TOLL-like receptor 3; i 99.9 1.6E-20 5.5E-25 204.3 23.2 275 166-451 11-306 (680)
37 4fcg_A Uncharacterized protein 99.9 7.2E-21 2.5E-25 187.4 15.9 241 225-545 79-320 (328)
38 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 4.6E-20 1.6E-24 195.9 21.0 127 181-311 31-159 (562)
39 2z80_A TOLL-like receptor 2, v 99.8 2.3E-20 7.9E-25 186.2 17.2 270 184-512 34-312 (353)
40 1ziw_A TOLL-like receptor 3; i 99.8 4.4E-20 1.5E-24 200.9 20.3 246 184-453 7-284 (680)
41 3j0a_A TOLL-like receptor 5; m 99.8 8E-20 2.7E-24 203.0 21.0 297 184-519 7-379 (844)
42 2a5y_B CED-4; apoptosis; HET: 99.8 1.1E-21 3.7E-26 206.6 5.5 141 2-155 313-470 (549)
43 1ogq_A PGIP-2, polygalacturona 99.8 9.1E-21 3.1E-25 185.5 9.9 127 181-309 50-185 (313)
44 2z80_A TOLL-like receptor 2, v 99.8 7.3E-20 2.5E-24 182.5 15.3 158 181-353 52-214 (353)
45 1xku_A Decorin; proteoglycan, 99.8 1.2E-18 4E-23 172.1 19.4 248 203-521 31-282 (330)
46 2z66_A Variable lymphocyte rec 99.8 2.6E-19 8.9E-24 174.8 14.0 124 185-310 11-138 (306)
47 4g8a_A TOLL-like receptor 4; l 99.8 6.5E-19 2.2E-23 190.0 18.1 129 181-311 52-186 (635)
48 4g8a_A TOLL-like receptor 4; l 99.8 1.1E-18 3.9E-23 188.1 19.4 115 175-290 70-189 (635)
49 3zyj_A Leucine-rich repeat-con 99.8 5.2E-19 1.8E-23 181.8 15.2 222 181-453 64-291 (440)
50 2ft3_A Biglycan; proteoglycan, 99.8 1.2E-18 4E-23 172.2 16.8 263 203-513 33-306 (332)
51 3g06_A SSPH2 (leucine-rich rep 99.8 2.4E-18 8.3E-23 182.4 19.6 76 417-512 220-295 (622)
52 3o53_A Protein LRIM1, AGAP0063 99.8 2.3E-20 7.9E-25 183.1 3.7 103 200-311 31-133 (317)
53 3zyi_A Leucine-rich repeat-con 99.8 8E-19 2.7E-23 181.1 15.4 221 181-452 75-301 (452)
54 1jl5_A Outer protein YOPM; leu 99.8 1.7E-18 5.8E-23 178.0 17.0 117 181-310 111-227 (454)
55 1jl5_A Outer protein YOPM; leu 99.8 3.4E-18 1.2E-22 175.8 17.4 218 181-452 91-308 (454)
56 3zyi_A Leucine-rich repeat-con 99.8 5.8E-18 2E-22 174.6 18.8 240 184-512 57-301 (452)
57 2z66_A Variable lymphocyte rec 99.8 3.4E-18 1.2E-22 166.9 15.0 128 181-310 28-162 (306)
58 3zyj_A Leucine-rich repeat-con 99.8 1.2E-17 4.2E-22 171.6 19.3 240 184-512 46-290 (440)
59 1ozn_A Reticulon 4 receptor; N 99.8 1.3E-17 4.5E-22 160.9 17.6 219 184-453 14-237 (285)
60 1ogq_A PGIP-2, polygalacturona 99.8 2.1E-18 7.2E-23 168.7 11.1 253 203-519 50-309 (313)
61 3ogk_B Coronatine-insensitive 99.7 2E-18 6.8E-23 184.7 8.4 308 180-517 163-528 (592)
62 3g06_A SSPH2 (leucine-rich rep 99.7 6.4E-17 2.2E-21 171.5 19.1 235 181-488 61-295 (622)
63 1h6u_A Internalin H; cell adhe 99.7 3E-17 1E-21 160.0 15.1 124 179-309 39-162 (308)
64 3oja_A Leucine-rich immune mol 99.7 1.5E-17 5E-22 172.7 13.5 237 200-509 31-270 (487)
65 1ozn_A Reticulon 4 receptor; N 99.7 1.4E-17 4.8E-22 160.7 12.4 201 180-429 31-236 (285)
66 1wwl_A Monocyte differentiatio 99.7 6.7E-19 2.3E-23 172.3 2.1 154 181-351 43-215 (312)
67 3o53_A Protein LRIM1, AGAP0063 99.7 1.2E-17 4.1E-22 163.7 11.0 264 205-518 12-279 (317)
68 3oja_A Leucine-rich immune mol 99.7 4.6E-18 1.6E-22 176.5 7.3 240 179-490 32-275 (487)
69 1z7x_W Ribonuclease inhibitor; 99.7 3.5E-18 1.2E-22 176.9 5.1 310 179-512 54-409 (461)
70 1p9a_G Platelet glycoprotein I 99.7 1.6E-16 5.4E-21 153.4 15.8 131 178-311 7-137 (290)
71 3rfs_A Internalin B, repeat mo 99.7 2.7E-17 9.1E-22 157.5 9.7 127 179-308 39-167 (272)
72 2o6q_A Variable lymphocyte rec 99.7 3E-16 1E-20 150.0 16.9 127 182-310 17-145 (270)
73 2z62_A TOLL-like receptor 4, v 99.7 3.3E-16 1.1E-20 150.3 17.0 200 204-453 29-236 (276)
74 2xwt_C Thyrotropin receptor; s 99.7 1.1E-16 3.8E-21 150.1 13.1 103 203-308 31-140 (239)
75 1h6u_A Internalin H; cell adhe 99.7 1.4E-16 4.8E-21 155.3 13.9 193 199-453 37-229 (308)
76 3ogk_B Coronatine-insensitive 99.7 4.9E-17 1.7E-21 173.9 8.7 320 182-535 139-524 (592)
77 2o6q_A Variable lymphocyte rec 99.7 7.4E-16 2.5E-20 147.3 15.2 196 204-452 17-216 (270)
78 2xwt_C Thyrotropin receptor; s 99.7 3.7E-16 1.3E-20 146.5 12.3 93 214-310 22-117 (239)
79 2ast_B S-phase kinase-associat 99.7 1.1E-16 3.7E-21 158.4 8.3 230 227-518 70-309 (336)
80 1z7x_W Ribonuclease inhibitor; 99.7 3E-17 1E-21 169.8 4.5 312 181-515 3-383 (461)
81 2ast_B S-phase kinase-associat 99.7 5.1E-17 1.7E-21 160.8 5.5 219 183-451 49-282 (336)
82 4ay9_X Follicle-stimulating ho 99.6 5.3E-16 1.8E-20 154.1 12.6 237 206-509 12-254 (350)
83 3rfs_A Internalin B, repeat mo 99.6 1.2E-15 4.1E-20 145.9 14.1 165 167-347 49-215 (272)
84 3sfz_A APAF-1, apoptotic pepti 99.6 1.9E-16 6.6E-21 184.1 10.3 140 2-155 304-451 (1249)
85 2z62_A TOLL-like receptor 4, v 99.6 9E-16 3.1E-20 147.2 12.8 201 181-429 28-235 (276)
86 2p1m_B Transport inhibitor res 99.6 1.1E-16 3.8E-21 171.2 6.0 303 179-513 154-518 (594)
87 1p9a_G Platelet glycoprotein I 99.6 2.9E-15 1E-19 144.5 14.9 200 199-453 6-207 (290)
88 4ay9_X Follicle-stimulating ho 99.6 9.3E-16 3.2E-20 152.4 11.3 238 185-451 13-256 (350)
89 1wwl_A Monocyte differentiatio 99.6 3.5E-17 1.2E-21 160.0 0.8 243 201-511 41-306 (312)
90 1h6t_A Internalin B; cell adhe 99.6 3E-15 1E-19 144.5 12.5 101 201-308 44-144 (291)
91 2p1m_B Transport inhibitor res 99.6 3.5E-16 1.2E-20 167.3 5.7 181 333-535 310-517 (594)
92 2ca6_A RAN GTPase-activating p 99.6 1.5E-15 5.2E-20 153.2 8.4 239 199-488 28-314 (386)
93 1vt4_I APAF-1 related killer D 99.6 1.2E-15 4.2E-20 163.9 6.7 112 14-149 322-436 (1221)
94 4ezg_A Putative uncharacterize 99.6 1.4E-14 4.8E-19 131.3 12.1 151 178-349 41-193 (197)
95 1h6t_A Internalin B; cell adhe 99.6 1.4E-14 4.9E-19 139.7 12.7 149 177-349 42-190 (291)
96 1m9s_A Internalin B; cell inva 99.6 2.8E-15 9.5E-20 158.8 7.7 100 202-308 42-141 (605)
97 3m19_A Variable lymphocyte rec 99.5 5.2E-14 1.8E-18 132.8 14.7 153 181-349 35-191 (251)
98 4glp_A Monocyte differentiatio 99.5 9.8E-15 3.4E-19 142.5 9.8 84 226-310 90-181 (310)
99 2ca6_A RAN GTPase-activating p 99.5 1.8E-15 6.2E-20 152.6 4.7 247 211-512 17-314 (386)
100 3e6j_A Variable lymphocyte rec 99.5 1.3E-13 4.3E-18 128.1 15.0 130 181-311 40-172 (229)
101 3goz_A Leucine-rich repeat-con 99.5 1.7E-14 5.9E-19 144.0 9.1 256 187-488 4-295 (362)
102 1xeu_A Internalin C; cellular 99.5 1.3E-13 4.4E-18 130.8 12.8 150 176-350 36-185 (263)
103 1m9s_A Internalin B; cell inva 99.5 5.9E-14 2E-18 148.6 11.2 169 177-373 39-207 (605)
104 3m19_A Variable lymphocyte rec 99.5 2.4E-13 8.1E-18 128.3 13.7 135 176-311 54-192 (251)
105 2v9t_B SLIT homolog 2 protein 99.5 4.2E-13 1.4E-17 123.7 14.7 126 182-308 33-162 (220)
106 2v9t_B SLIT homolog 2 protein 99.5 1.8E-13 6.3E-18 126.1 12.1 149 184-349 14-164 (220)
107 4ezg_A Putative uncharacterize 99.5 4.1E-13 1.4E-17 121.5 13.6 139 168-310 53-193 (197)
108 2o6s_A Variable lymphocyte rec 99.5 3.4E-13 1.2E-17 123.3 12.8 106 203-309 28-135 (208)
109 1z6t_A APAF-1, apoptotic prote 99.5 7.2E-14 2.5E-18 149.0 9.4 135 4-152 306-448 (591)
110 2o6s_A Variable lymphocyte rec 99.5 8.6E-13 2.9E-17 120.6 15.0 130 180-310 27-160 (208)
111 2v70_A SLIT-2, SLIT homolog 2 99.5 3.6E-13 1.2E-17 124.1 12.1 147 185-348 15-164 (220)
112 2v70_A SLIT-2, SLIT homolog 2 99.4 5.2E-13 1.8E-17 123.1 11.9 130 181-311 32-166 (220)
113 2ell_A Acidic leucine-rich nuc 99.4 3E-13 1E-17 119.1 9.5 129 181-312 24-161 (168)
114 1a9n_A U2A', U2A'; complex (nu 99.4 2.2E-13 7.4E-18 121.0 8.0 126 180-308 18-150 (176)
115 3cvr_A Invasion plasmid antige 99.4 1.9E-12 6.6E-17 135.5 16.1 113 182-310 60-172 (571)
116 3e6j_A Variable lymphocyte rec 99.4 8.5E-13 2.9E-17 122.5 12.0 148 183-348 21-170 (229)
117 2je0_A Acidic leucine-rich nuc 99.4 3.2E-13 1.1E-17 116.3 8.4 123 181-306 17-148 (149)
118 1xeu_A Internalin C; cellular 99.4 1.1E-13 3.9E-18 131.2 5.7 144 180-348 18-161 (263)
119 3goz_A Leucine-rich repeat-con 99.4 8.2E-14 2.8E-18 139.0 4.4 257 208-512 3-295 (362)
120 4glp_A Monocyte differentiatio 99.4 1.5E-13 5.1E-18 134.0 5.7 128 182-310 92-236 (310)
121 3cvr_A Invasion plasmid antige 99.4 3.7E-12 1.3E-16 133.4 15.1 180 204-493 60-246 (571)
122 2xot_A Amphoterin-induced prot 99.4 2.5E-12 8.4E-17 128.2 13.2 130 181-311 39-176 (361)
123 2xot_A Amphoterin-induced prot 99.3 2.8E-12 9.7E-17 127.7 10.9 155 184-352 21-178 (361)
124 2o6r_A Variable lymphocyte rec 99.3 1.1E-11 3.8E-16 109.9 13.0 127 183-311 9-137 (177)
125 1a9n_A U2A', U2A'; complex (nu 99.3 3.1E-12 1E-16 113.5 9.1 142 195-351 11-154 (176)
126 2wfh_A SLIT homolog 2 protein 99.3 1.3E-11 4.5E-16 111.0 12.8 124 184-310 13-138 (193)
127 2je0_A Acidic leucine-rich nuc 99.3 3.6E-12 1.2E-16 109.6 8.7 129 201-344 15-147 (149)
128 2ell_A Acidic leucine-rich nuc 99.3 1.7E-11 5.8E-16 107.8 13.0 114 177-291 45-164 (168)
129 1w8a_A SLIT protein; signaling 99.3 8E-12 2.7E-16 112.4 10.7 126 184-311 11-139 (192)
130 1dce_A Protein (RAB geranylger 99.3 7.1E-12 2.4E-16 131.8 10.5 104 204-312 442-547 (567)
131 4b8c_D Glucose-repressible alc 99.2 1.5E-11 5E-16 133.6 9.2 110 199-311 220-329 (727)
132 1dce_A Protein (RAB geranylger 99.2 3.2E-11 1.1E-15 126.8 11.4 137 200-354 406-550 (567)
133 1w8a_A SLIT protein; signaling 99.2 1.7E-11 5.8E-16 110.3 7.7 125 206-349 11-138 (192)
134 2wfh_A SLIT homolog 2 protein 99.2 3.9E-11 1.3E-15 107.9 9.8 125 206-349 13-138 (193)
135 4b8c_D Glucose-repressible alc 99.2 4.2E-11 1.4E-15 130.0 9.3 151 181-350 173-329 (727)
136 2o6r_A Variable lymphocyte rec 99.1 2.5E-10 8.7E-15 101.1 12.1 106 180-285 27-136 (177)
137 2r9u_A Variable lymphocyte rec 99.1 3.6E-10 1.2E-14 99.7 11.2 101 206-310 15-117 (174)
138 2r9u_A Variable lymphocyte rec 99.1 2.6E-10 8.8E-15 100.6 10.1 106 184-291 15-122 (174)
139 1ds9_A Outer arm dynein; leuci 99.1 1.8E-12 6.1E-17 117.4 -4.3 108 199-310 44-152 (198)
140 3g39_A Variable lymphocyte rec 99.1 2.7E-10 9.2E-15 100.1 9.8 102 205-310 11-114 (170)
141 3g39_A Variable lymphocyte rec 99.1 5.6E-10 1.9E-14 98.1 10.1 101 183-284 11-113 (170)
142 1ds9_A Outer arm dynein; leuci 99.0 4.4E-12 1.5E-16 114.8 -5.1 127 177-305 44-181 (198)
143 3sb4_A Hypothetical leucine ri 98.9 4.7E-09 1.6E-13 102.9 11.4 100 386-507 224-327 (329)
144 3sb4_A Hypothetical leucine ri 98.8 1.2E-08 4E-13 100.1 11.3 57 383-447 268-327 (329)
145 2ifg_A High affinity nerve gro 98.8 1.3E-08 4.4E-13 100.6 9.6 98 186-283 13-113 (347)
146 4fdw_A Leucine rich hypothetic 98.7 2.8E-07 9.7E-12 92.4 17.4 103 199-307 132-235 (401)
147 2ifg_A High affinity nerve gro 98.7 3.4E-08 1.2E-12 97.5 9.7 102 206-311 11-116 (347)
148 4fdw_A Leucine rich hypothetic 98.6 5.9E-07 2E-11 90.1 16.7 221 176-452 131-356 (401)
149 3e4g_A ATP synthase subunit S, 98.4 1.1E-07 3.8E-12 82.3 4.2 87 418-516 61-154 (176)
150 3un9_A NLR family member X1; l 98.4 6E-08 2E-12 96.4 2.4 158 181-350 72-252 (372)
151 3un9_A NLR family member X1; l 98.3 1.4E-07 5E-12 93.6 1.7 136 202-350 71-224 (372)
152 3e4g_A ATP synthase subunit S, 98.3 1.8E-07 6.1E-12 81.0 1.5 89 389-494 62-156 (176)
153 2ra8_A Uncharacterized protein 98.2 2.5E-06 8.5E-11 84.0 6.9 63 264-345 163-227 (362)
154 4fs7_A Uncharacterized protein 97.9 0.00014 4.9E-09 72.7 15.5 124 176-306 66-193 (394)
155 2ra8_A Uncharacterized protein 97.9 2.9E-05 1E-09 76.3 10.0 15 384-398 303-317 (362)
156 3rw6_A Nuclear RNA export fact 97.9 3E-06 1E-10 79.1 2.5 99 208-307 148-260 (267)
157 4gt6_A Cell surface protein; l 97.8 0.00032 1.1E-08 70.2 15.9 102 199-305 83-189 (394)
158 4fs7_A Uncharacterized protein 97.8 0.00017 5.9E-09 72.1 12.3 126 174-306 87-216 (394)
159 1io0_A Tropomodulin; LRR prote 97.7 2.7E-05 9.4E-10 68.8 4.4 107 201-310 34-163 (185)
160 1io0_A Tropomodulin; LRR prote 97.7 3.5E-05 1.2E-09 68.1 5.0 117 222-351 31-165 (185)
161 3rw6_A Nuclear RNA export fact 97.7 6.1E-05 2.1E-09 70.2 6.7 80 200-280 167-258 (267)
162 4gt6_A Cell surface protein; l 97.6 0.0031 1.1E-07 62.9 18.0 283 171-487 77-367 (394)
163 4h09_A Hypothetical leucine ri 97.1 0.047 1.6E-06 53.8 20.4 120 180-306 45-166 (379)
164 4h09_A Hypothetical leucine ri 95.5 0.074 2.5E-06 52.4 10.8 102 200-305 237-340 (379)
165 3rfe_A Platelet glycoprotein I 95.4 0.03 1E-06 45.7 6.2 31 252-282 33-64 (130)
166 3rfe_A Platelet glycoprotein I 94.5 0.059 2E-06 43.9 5.8 35 228-262 32-67 (130)
167 1pgv_A TMD-1, tropomodulin TMD 93.3 0.15 5E-06 44.7 6.4 115 224-347 38-167 (197)
168 1pgv_A TMD-1, tropomodulin TMD 92.1 0.16 5.3E-06 44.6 4.8 60 224-283 67-136 (197)
169 2qen_A Walker-type ATPase; unk 74.9 4.9 0.00017 38.3 6.7 120 6-148 226-347 (350)
170 2fna_A Conserved hypothetical 68.5 11 0.00039 35.7 7.6 117 9-148 233-355 (357)
171 1hqc_A RUVB; extended AAA-ATPa 64.3 4.3 0.00015 38.4 3.5 34 100-133 289-324 (324)
172 1w5s_A Origin recognition comp 45.4 17 0.00059 35.4 4.4 114 6-134 240-371 (412)
173 2vda_B Maltoporin; sugar trans 27.9 26 0.0009 18.4 1.2 18 14-31 7-24 (28)
174 2lz0_A Uncharacterized protein 26.5 67 0.0023 24.1 3.9 44 214-258 7-51 (100)
No 1
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=1.7e-25 Score=223.09 Aligned_cols=290 Identities=18% Similarity=0.214 Sum_probs=209.9
Q ss_pred CCCCcccceEEEeecccccccCCCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcccCCCCCCCeE
Q 044595 176 DVTGWEKARRLSLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHL 255 (558)
Q Consensus 176 ~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L 255 (558)
....++++++|++.++.+..++.+..+++|++|++++|.+..++. +..+++|++|++++|.++.+| .++.+++|++|
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L 115 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLREL 115 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEE
T ss_pred cchhcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEE
Confidence 344567888899988888888888888899999999888888776 788889999999998888875 58888999999
Q ss_pred eccCCCCCCcchhhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhcc
Q 044595 256 DLSESDIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLG 335 (558)
Q Consensus 256 ~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 335 (558)
++++|.+..+|. +..+++|++|++++|.....++. ++.+++|++|++.++.... ...+..
T Consensus 116 ~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~-----------------~~~~~~ 175 (347)
T 4fmz_A 116 YLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKD-----------------VTPIAN 175 (347)
T ss_dssp ECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCC-----------------CGGGGG
T ss_pred ECcCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCC-----------------chhhcc
Confidence 999988888875 88888999999988876666665 7888899999888776542 112677
Q ss_pred CCCcceEEEEEccchhHHHHhccccccccccceeeeeccCCCcccccchhhhhhhhhhhhccccccceeEeccCCccccc
Q 044595 336 LKSLEVISFTLRSSHGLQMILSSDQLRSCTRALSFQCFNDSTSLEVSALADLKQLKMLRIARSEILEELKMDCAGEVRQF 415 (558)
Q Consensus 336 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~ 415 (558)
+++|+.|++..+.......+. ....|+.+++.++.-.... .+..+++|++|++++| .+..++. ..
T Consensus 176 l~~L~~L~l~~n~l~~~~~~~----~l~~L~~L~l~~n~l~~~~---~~~~~~~L~~L~l~~n-~l~~~~~-~~------ 240 (347)
T 4fmz_A 176 LTDLYSLSLNYNQIEDISPLA----SLTSLHYFTAYVNQITDIT---PVANMTRLNSLKIGNN-KITDLSP-LA------ 240 (347)
T ss_dssp CTTCSEEECTTSCCCCCGGGG----GCTTCCEEECCSSCCCCCG---GGGGCTTCCEEECCSS-CCCCCGG-GT------
T ss_pred CCCCCEEEccCCccccccccc----CCCccceeecccCCCCCCc---hhhcCCcCCEEEccCC-ccCCCcc-hh------
Confidence 888888888776655544422 2236777777765432222 2567788888888877 3444333 21
Q ss_pred ccccccEEEEcCCCCCCCchhhhccCCCceEEEecCchhHHHhhcCccCCcccccccCCCCcccceeeccCccccccccc
Q 044595 416 VFHSLNKVEIYGCSKLKDLTFLVFAPNLKSIKVTGSHAMEAIISVGKFAEVPEVMANLNPFAKLQNLEVIGAINLKSIYW 495 (558)
Q Consensus 416 ~~~~L~~L~L~~~~~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~ 495 (558)
.+++|++|++++| .++.++.+..+++|+.|++++|.. +.+ ..+..+++|++|++++|.--...+.
T Consensus 241 ~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~l-~~~-------------~~~~~l~~L~~L~L~~n~l~~~~~~ 305 (347)
T 4fmz_A 241 NLSQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSNQI-SDI-------------SVLNNLSQLNSLFLNNNQLGNEDME 305 (347)
T ss_dssp TCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCC-CCC-------------GGGGGCTTCSEEECCSSCCCGGGHH
T ss_pred cCCCCCEEECCCC-ccCCChhHhcCCCcCEEEccCCcc-CCC-------------hhhcCCCCCCEEECcCCcCCCcChh
Confidence 3778888888888 677777788888888888888743 111 1345678888888888753333333
Q ss_pred CCCCCCCcceEeeecCCCCcCCCC
Q 044595 496 KPLRFPHLKTMSFFHCNKLKMLPL 519 (558)
Q Consensus 496 ~~~~l~~L~~L~i~~C~~L~~lP~ 519 (558)
....+++|++|++++|+ ++.+|.
T Consensus 306 ~l~~l~~L~~L~L~~n~-l~~~~~ 328 (347)
T 4fmz_A 306 VIGGLTNLTTLFLSQNH-ITDIRP 328 (347)
T ss_dssp HHHTCTTCSEEECCSSS-CCCCGG
T ss_pred HhhccccCCEEEccCCc-cccccC
Confidence 34567888888888875 555544
No 2
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=2.6e-24 Score=214.44 Aligned_cols=293 Identities=17% Similarity=0.222 Sum_probs=234.6
Q ss_pred cCcccccCCCCCCcccceEEEeecccccccCCCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCccc
Q 044595 167 AGVGLVEAPDVTGWEKARRLSLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGI 246 (558)
Q Consensus 167 ~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i 246 (558)
.+......+.+..++++++|++++|.+..++.+..+++|++|++++|.+..++. +..+++|++|++++|.++.+|. +
T Consensus 52 ~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~l~~n~i~~~~~-~ 128 (347)
T 4fmz_A 52 AGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNISDISP-L 128 (347)
T ss_dssp CSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECTTSCCCCCGG-G
T ss_pred eCCccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchH--HcCCCcCCEEECcCCcccCchh-h
Confidence 344445556677889999999999999998889999999999999999998764 8899999999999999999876 8
Q ss_pred CCCCCCCeEeccCCCCCCcchhhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCc
Q 044595 247 SKLVSLQHLDLSESDIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGG 326 (558)
Q Consensus 247 ~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 326 (558)
..+++|++|++++|.....+..+..+++|++|++++| .+..++. ++.+++|++|++.++....
T Consensus 129 ~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~--~~~l~~L~~L~l~~n~l~~-------------- 191 (347)
T 4fmz_A 129 ANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTP--IANLTDLYSLSLNYNQIED-------------- 191 (347)
T ss_dssp TTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECTTSCCCC--------------
T ss_pred ccCCceeEEECCCCCCcccccchhhCCCCcEEEecCC-CcCCchh--hccCCCCCEEEccCCcccc--------------
Confidence 9999999999999954444446999999999999998 5667765 7899999999999886542
Q ss_pred chhHHHhccCCCcceEEEEEccchhHHHHhccccccccccceeeeeccCCCcccccchhhhhhhhhhhhccccccceeEe
Q 044595 327 EFIVEELLGLKSLEVISFTLRSSHGLQMILSSDQLRSCTRALSFQCFNDSTSLEVSALADLKQLKMLRIARSEILEELKM 406 (558)
Q Consensus 327 ~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~ 406 (558)
+..+..+++|+.+++..+.......+ ....+|+.|+++++.-.. .+ .+..+++|+.|+++++ .+..++
T Consensus 192 ---~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~l~~n-~l~~~~- 259 (347)
T 4fmz_A 192 ---ISPLASLTSLHYFTAYVNQITDITPV----ANMTRLNSLKIGNNKITD-LS--PLANLSQLTWLEIGTN-QISDIN- 259 (347)
T ss_dssp ---CGGGGGCTTCCEEECCSSCCCCCGGG----GGCTTCCEEECCSSCCCC-CG--GGTTCTTCCEEECCSS-CCCCCG-
T ss_pred ---cccccCCCccceeecccCCCCCCchh----hcCCcCCEEEccCCccCC-Cc--chhcCCCCCEEECCCC-ccCCCh-
Confidence 12277889999999988776655442 223379999998865433 22 2778899999999988 444442
Q ss_pred ccCCcccccccccccEEEEcCCCCCCCchhhhccCCCceEEEecCchhHHHhhcCccCCcccccccCCCCcccceeeccC
Q 044595 407 DCAGEVRQFVFHSLNKVEIYGCSKLKDLTFLVFAPNLKSIKVTGSHAMEAIISVGKFAEVPEVMANLNPFAKLQNLEVIG 486 (558)
Q Consensus 407 ~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 486 (558)
... .+++|+.|++++| .+++++.+..+++|+.|++++|......+ ..+..+++|++|++++
T Consensus 260 ~~~------~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~l~~~~~------------~~l~~l~~L~~L~L~~ 320 (347)
T 4fmz_A 260 AVK------DLTKLKMLNVGSN-QISDISVLNNLSQLNSLFLNNNQLGNEDM------------EVIGGLTNLTTLFLSQ 320 (347)
T ss_dssp GGT------TCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCGGGH------------HHHHTCTTCSEEECCS
T ss_pred hHh------cCCCcCEEEccCC-ccCCChhhcCCCCCCEEECcCCcCCCcCh------------hHhhccccCCEEEccC
Confidence 222 3899999999999 78888889999999999999997633322 2456789999999999
Q ss_pred cccccccccCCCCCCCcceEeeecCC
Q 044595 487 AINLKSIYWKPLRFPHLKTMSFFHCN 512 (558)
Q Consensus 487 c~~L~~~~~~~~~l~~L~~L~i~~C~ 512 (558)
|+ +..++. ...+++|++|++++|+
T Consensus 321 n~-l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 321 NH-ITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp SS-CCCCGG-GGGCTTCSEESSSCC-
T ss_pred Cc-cccccC-hhhhhccceeehhhhc
Confidence 86 666654 6679999999999984
No 3
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=4.7e-23 Score=213.67 Aligned_cols=259 Identities=17% Similarity=0.238 Sum_probs=146.2
Q ss_pred ccccCCCCCCcccceEEEeecccccccCCCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcccCCC
Q 044595 170 GLVEAPDVTGWEKARRLSLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKL 249 (558)
Q Consensus 170 ~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L 249 (558)
.....+.+..++++++|++++|.+..++.+..+++|++|++++|.+..+++ +.++++|++|++++|.++.+|. ++++
T Consensus 57 ~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l 133 (466)
T 1o6v_A 57 GIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP-LKNL 133 (466)
T ss_dssp CCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTC
T ss_pred CCccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH-HcCC
Confidence 344455566778888888888888887778888888888888888887776 7788888888888888887765 7888
Q ss_pred CCCCeEeccCCCCCCcchhhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCC-----cccC
Q 044595 250 VSLQHLDLSESDIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDS-----SLFG 324 (558)
Q Consensus 250 ~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~-----~~~~ 324 (558)
++|++|++++|.+..+| .++.+++|++|++++ .+..++. ++++++|++|++.++............ .+.+
T Consensus 134 ~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~--~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~ 208 (466)
T 1o6v_A 134 TNLNRLELSSNTISDIS-ALSGLTSLQQLSFGN--QVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIATN 208 (466)
T ss_dssp TTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEE--SCCCCGG--GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCS
T ss_pred CCCCEEECCCCccCCCh-hhccCCcccEeecCC--cccCchh--hccCCCCCEEECcCCcCCCChhhccCCCCCEEEecC
Confidence 88888888888777766 366666666666642 2333333 556666666666655433211000000 0000
Q ss_pred CcchhHHHhccCCCcceEEEEEccchhHHHHhccccccccccceeeeeccCCCcccccchhhhhhhhhhhhcccccccee
Q 044595 325 GGEFIVEELLGLKSLEVISFTLRSSHGLQMILSSDQLRSCTRALSFQCFNDSTSLEVSALADLKQLKMLRIARSEILEEL 404 (558)
Q Consensus 325 ~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l 404 (558)
........++.+++|+.|++..+.....+.+. ...+|+.|+++++.-....+ +..+++|+.|+++++ .+..+
T Consensus 209 n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~----~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n-~l~~~ 280 (466)
T 1o6v_A 209 NQISDITPLGILTNLDELSLNGNQLKDIGTLA----SLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGAN-QISNI 280 (466)
T ss_dssp SCCCCCGGGGGCTTCCEEECCSSCCCCCGGGG----GCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSS-CCCCC
T ss_pred CcccccccccccCCCCEEECCCCCcccchhhh----cCCCCCEEECCCCccccchh---hhcCCCCCEEECCCC-ccCcc
Confidence 00000111344555555555544433332211 11245555555433222111 444555555555554 22222
Q ss_pred EeccCCcccccccccccEEEEcCCCCCCCchhhhccCCCceEEEecCc
Q 044595 405 KMDCAGEVRQFVFHSLNKVEIYGCSKLKDLTFLVFAPNLKSIKVTGSH 452 (558)
Q Consensus 405 ~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~l~~l~~L~~L~l~~c~ 452 (558)
+. .. .+++|+.|++++| .++.++.++.+++|+.|++++|.
T Consensus 281 ~~-~~------~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~L~~n~ 320 (466)
T 1o6v_A 281 SP-LA------GLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFNN 320 (466)
T ss_dssp GG-GT------TCTTCSEEECCSS-CCSCCGGGGGCTTCSEEECCSSC
T ss_pred cc-cc------CCCccCeEEcCCC-cccCchhhcCCCCCCEEECcCCc
Confidence 21 11 2555666666655 45555555556666666666554
No 4
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.90 E-value=3.7e-23 Score=219.40 Aligned_cols=131 Identities=26% Similarity=0.369 Sum_probs=113.1
Q ss_pred ccceEEEeecccccccC--CCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcc-cCCCCCCCeEec
Q 044595 181 EKARRLSLMHNQITNLS--EIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLG-ISKLVSLQHLDL 257 (558)
Q Consensus 181 ~~lr~L~l~~~~~~~l~--~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l 257 (558)
+++++|++++|.+..++ .+..+++|++|++++|.+..+++..+..+++|++|++++|.++.+|.. ++++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 68999999999988763 478899999999999999988877789999999999999999987664 899999999999
Q ss_pred cCCCCCC--cchhhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCC
Q 044595 258 SESDIEE--LPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHN 311 (558)
Q Consensus 258 ~~~~l~~--lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 311 (558)
++|.++. .|..++.+++|++|++++|..+..+|...++++++|++|++.++...
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence 9998884 46778999999999999986677887655889999999999887654
No 5
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=6.7e-23 Score=213.41 Aligned_cols=276 Identities=24% Similarity=0.331 Sum_probs=165.6
Q ss_pred ccceEEEeecccccccC--CCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcc-cCCCCCCCeEec
Q 044595 181 EKARRLSLMHNQITNLS--EIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLG-ISKLVSLQHLDL 257 (558)
Q Consensus 181 ~~lr~L~l~~~~~~~l~--~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l 257 (558)
++++.|++++|.+..++ .+..+++|++|++++|.+..+++..|.++++|++|++++|.++.+|.. ++++++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 56777777777777653 366677777777777777776555577777777777777777766543 567777777777
Q ss_pred cCCCCCCc-chhhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhccC
Q 044595 258 SESDIEEL-PGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGL 336 (558)
Q Consensus 258 ~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l 336 (558)
++|.+..+ |..+..+++|++|++++| .+..++...++.+++|++|++.++.... .....+..+
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~---------------~~~~~l~~l 175 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKCNLTS---------------IPTEALSHL 175 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTTCTTCCEEEEESCCCSS---------------CCHHHHTTC
T ss_pred CCCccccCChhHccccccCCEEECCCC-ccceeChhhccCCCCCCEEECCCCcCcc---------------cChhHhccc
Confidence 77777654 445677777777777776 4455544446777777777777665432 223446666
Q ss_pred CCcceEEEEEccchhHHHHhccccccccccceeeeeccCCCcccccchhhhhhhhhhhhccccccceeEeccCCcccccc
Q 044595 337 KSLEVISFTLRSSHGLQMILSSDQLRSCTRALSFQCFNDSTSLEVSALADLKQLKMLRIARSEILEELKMDCAGEVRQFV 416 (558)
Q Consensus 337 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~ 416 (558)
++|+.|++..+..... ....+..+++|+.|+++++..+..++.....
T Consensus 176 ~~L~~L~l~~n~i~~~---------------------------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~------ 222 (477)
T 2id5_A 176 HGLIVLRLRHLNINAI---------------------------RDYSFKRLYRLKVLEISHWPYLDTMTPNCLY------ 222 (477)
T ss_dssp TTCCEEEEESCCCCEE---------------------------CTTCSCSCTTCCEEEEECCTTCCEECTTTTT------
T ss_pred CCCcEEeCCCCcCcEe---------------------------ChhhcccCcccceeeCCCCccccccCccccc------
Confidence 7777776665433221 1112445566666666666555555444333
Q ss_pred cccccEEEEcCCCCCCCch--hhhccCCCceEEEecCchhHHHhhcCccCCcccccccCCCCcccceeeccCccccccc-
Q 044595 417 FHSLNKVEIYGCSKLKDLT--FLVFAPNLKSIKVTGSHAMEAIISVGKFAEVPEVMANLNPFAKLQNLEVIGAINLKSI- 493 (558)
Q Consensus 417 ~~~L~~L~L~~~~~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~- 493 (558)
..+|++|++++| .++.++ .++.+++|+.|++++|.. +.+. ...+..+++|++|+++++. +..+
T Consensus 223 ~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~-----------~~~~~~l~~L~~L~L~~n~-l~~~~ 288 (477)
T 2id5_A 223 GLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNPI-STIE-----------GSMLHELLRLQEIQLVGGQ-LAVVE 288 (477)
T ss_dssp TCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSSCC-CEEC-----------TTSCTTCTTCCEEECCSSC-CSEEC
T ss_pred CccccEEECcCC-cccccCHHHhcCccccCeeECCCCcC-CccC-----------hhhccccccCCEEECCCCc-cceEC
Confidence 346666666666 455544 355666666666666543 1111 1234556666666666643 3333
Q ss_pred ccCCCCCCCcceEeeecCCCCcCCCCC
Q 044595 494 YWKPLRFPHLKTMSFFHCNKLKMLPLD 520 (558)
Q Consensus 494 ~~~~~~l~~L~~L~i~~C~~L~~lP~~ 520 (558)
+.....+++|++|++++| +++.+|..
T Consensus 289 ~~~~~~l~~L~~L~L~~N-~l~~~~~~ 314 (477)
T 2id5_A 289 PYAFRGLNYLRVLNVSGN-QLTTLEES 314 (477)
T ss_dssp TTTBTTCTTCCEEECCSS-CCSCCCGG
T ss_pred HHHhcCcccCCEEECCCC-cCceeCHh
Confidence 333445566666666665 55555543
No 6
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=5.3e-23 Score=213.27 Aligned_cols=306 Identities=15% Similarity=0.211 Sum_probs=194.5
Q ss_pred CcccceEEEeecccccccCCCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcccCCCCCCCeEecc
Q 044595 179 GWEKARRLSLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHLDLS 258 (558)
Q Consensus 179 ~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~ 258 (558)
.+++++.|++.++.+..++.+..+++|++|++++|.+..+++ +..+++|++|++++|.++.++. ++++++|++|+++
T Consensus 44 ~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLF 120 (466)
T ss_dssp HHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECC
T ss_pred HhccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEECC
Confidence 357899999999999999988899999999999999999887 8899999999999999998876 9999999999999
Q ss_pred CCCCCCcchhhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCC-----cccCCcchhHHHh
Q 044595 259 ESDIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDS-----SLFGGGEFIVEEL 333 (558)
Q Consensus 259 ~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~L 333 (558)
+|.++.+|. +..+++|++|++++| .+..++. ++++++|++|.+.... .......... .+.+.....+..+
T Consensus 121 ~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~l 195 (466)
T 1o6v_A 121 NNQITDIDP-LKNLTNLNRLELSSN-TISDISA--LSGLTSLQQLSFGNQV-TDLKPLANLTTLERLDISSNKVSDISVL 195 (466)
T ss_dssp SSCCCCCGG-GTTCTTCSEEEEEEE-EECCCGG--GTTCTTCSEEEEEESC-CCCGGGTTCTTCCEEECCSSCCCCCGGG
T ss_pred CCCCCCChH-HcCCCCCCEEECCCC-ccCCChh--hccCCcccEeecCCcc-cCchhhccCCCCCEEECcCCcCCCChhh
Confidence 999999985 899999999999998 5777775 8999999999986421 1110000000 0000011112234
Q ss_pred ccCCCcceEEEEEccchhHHHHhccccccccccceeeeeccCCCcccccchhhhhhhhhhhhccccccceeEeccCCccc
Q 044595 334 LGLKSLEVISFTLRSSHGLQMILSSDQLRSCTRALSFQCFNDSTSLEVSALADLKQLKMLRIARSEILEELKMDCAGEVR 413 (558)
Q Consensus 334 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~ 413 (558)
..+++|+.|++..+.......+ ....+|+.|+++++.- ... ..+..+++|+.|+++++. +..+++ .
T Consensus 196 ~~l~~L~~L~l~~n~l~~~~~~----~~l~~L~~L~l~~n~l-~~~--~~l~~l~~L~~L~l~~n~-l~~~~~-~----- 261 (466)
T 1o6v_A 196 AKLTNLESLIATNNQISDITPL----GILTNLDELSLNGNQL-KDI--GTLASLTNLTDLDLANNQ-ISNLAP-L----- 261 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGGG----GGCTTCCEEECCSSCC-CCC--GGGGGCTTCSEEECCSSC-CCCCGG-G-----
T ss_pred ccCCCCCEEEecCCcccccccc----cccCCCCEEECCCCCc-ccc--hhhhcCCCCCEEECCCCc-cccchh-h-----
Confidence 4455555555544443332221 1122455566555432 211 235566677777776663 332222 1
Q ss_pred ccccccccEEEEcCCCCCCCchhhhccCCCceEEEecCchhHHHhhcCccCCcc----------cccccCCCCcccceee
Q 044595 414 QFVFHSLNKVEIYGCSKLKDLTFLVFAPNLKSIKVTGSHAMEAIISVGKFAEVP----------EVMANLNPFAKLQNLE 483 (558)
Q Consensus 414 ~~~~~~L~~L~L~~~~~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~----------~~~~~~~~~~~L~~L~ 483 (558)
..+++|++|++++| .+..++.++.+++|+.|++++|..- .++....+..+. ... .+..+++|++|+
T Consensus 262 -~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~ 337 (466)
T 1o6v_A 262 -SGLTKLTELKLGAN-QISNISPLAGLTALTNLELNENQLE-DISPISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLF 337 (466)
T ss_dssp -TTCTTCSEEECCSS-CCCCCGGGTTCTTCSEEECCSSCCS-CCGGGGGCTTCSEEECCSSCCSCCG-GGGGCTTCCEEE
T ss_pred -hcCCCCCEEECCCC-ccCccccccCCCccCeEEcCCCccc-CchhhcCCCCCCEEECcCCcCCCch-hhccCccCCEeE
Confidence 13677888888887 6666666777888888888877532 111111111110 000 123445555555
Q ss_pred ccCcccccccccCCCCCCCcceEeeecCC
Q 044595 484 VIGAINLKSIYWKPLRFPHLKTMSFFHCN 512 (558)
Q Consensus 484 l~~c~~L~~~~~~~~~l~~L~~L~i~~C~ 512 (558)
+++| .+..++ ....+++|++|++++|+
T Consensus 338 l~~n-~l~~~~-~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 338 FYNN-KVSDVS-SLANLTNINWLSAGHNQ 364 (466)
T ss_dssp CCSS-CCCCCG-GGTTCTTCCEEECCSSC
T ss_pred CCCC-ccCCch-hhccCCCCCEEeCCCCc
Confidence 5554 333332 23456666666666663
No 7
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=2.9e-23 Score=210.26 Aligned_cols=301 Identities=14% Similarity=0.194 Sum_probs=223.4
Q ss_pred CcccceEEEeecccccccCC--CCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccC-cccCCCCCCCeE
Q 044595 179 GWEKARRLSLMHNQITNLSE--IPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLP-LGISKLVSLQHL 255 (558)
Q Consensus 179 ~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L 255 (558)
.+.+++++++.++.+..++. +..+++|++|++++|.+..+++..+..+++|++|++++|.++.+| ..++++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 45789999999999998876 677899999999999999998877999999999999999999774 568999999999
Q ss_pred eccCCCCCCcchh-hhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhc
Q 044595 256 DLSESDIEELPGE-LKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELL 334 (558)
Q Consensus 256 ~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 334 (558)
++++|.++.+|.. ++.+++|++|++++| .+..+++..++++++|++|++.++..... .++
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------------~~~ 183 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHV------------------DLS 183 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSCCSBC------------------CGG
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCcCCcc------------------ccc
Confidence 9999999999987 488999999999998 66777666689999999999998865431 245
Q ss_pred cCCCcceEEEEEccchhHHHHhccccccccccceeeeeccCCCcccccchhhhhhhhhhhhccccccceeEeccCCcccc
Q 044595 335 GLKSLEVISFTLRSSHGLQMILSSDQLRSCTRALSFQCFNDSTSLEVSALADLKQLKMLRIARSEILEELKMDCAGEVRQ 414 (558)
Q Consensus 335 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~ 414 (558)
.+++|+.|++..+....+ .....++.|+++++.- ...+ ....++|+.|+++++. +... .+..
T Consensus 184 ~l~~L~~L~l~~n~l~~~-------~~~~~L~~L~l~~n~l-~~~~---~~~~~~L~~L~l~~n~-l~~~--~~l~---- 245 (390)
T 3o6n_A 184 LIPSLFHANVSYNLLSTL-------AIPIAVEELDASHNSI-NVVR---GPVNVELTILKLQHNN-LTDT--AWLL---- 245 (390)
T ss_dssp GCTTCSEEECCSSCCSEE-------ECCSSCSEEECCSSCC-CEEE---CCCCSSCCEEECCSSC-CCCC--GGGG----
T ss_pred cccccceeeccccccccc-------CCCCcceEEECCCCee-eecc---ccccccccEEECCCCC-Cccc--HHHc----
Confidence 677888888776554332 1223677777776432 2222 1234678888888773 3332 1112
Q ss_pred cccccccEEEEcCCCCCCCc--hhhhccCCCceEEEecCchhHHHhhcCccCCcccccccCCCCcccceeeccCcccccc
Q 044595 415 FVFHSLNKVEIYGCSKLKDL--TFLVFAPNLKSIKVTGSHAMEAIISVGKFAEVPEVMANLNPFAKLQNLEVIGAINLKS 492 (558)
Q Consensus 415 ~~~~~L~~L~L~~~~~l~~l--~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~ 492 (558)
.+++|++|+++++ .++.+ ..++.+++|+.|++++|.. + .++.....+++|++|+++++ .+..
T Consensus 246 -~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l-~------------~~~~~~~~l~~L~~L~L~~n-~l~~ 309 (390)
T 3o6n_A 246 -NYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNNRL-V------------ALNLYGQPIPTLKVLDLSHN-HLLH 309 (390)
T ss_dssp -GCTTCSEEECCSS-CCCEEESGGGTTCSSCCEEECCSSCC-C------------EEECSSSCCTTCCEEECCSS-CCCC
T ss_pred -CCCCccEEECCCC-cCCCcChhHccccccCCEEECCCCcC-c------------ccCcccCCCCCCCEEECCCC-ccee
Confidence 3788888888888 55553 4577888888888888754 1 22334567888888888886 5677
Q ss_pred cccCCCCCCCcceEeeecCCCCcCCCCCCCcccccceeEecc
Q 044595 493 IYWKPLRFPHLKTMSFFHCNKLKMLPLDSNSAREHSIVIRGD 534 (558)
Q Consensus 493 ~~~~~~~l~~L~~L~i~~C~~L~~lP~~~~~~~~~~~~i~~~ 534 (558)
++.....+++|++|++++| .++.+|... ...++...+.+.
T Consensus 310 ~~~~~~~l~~L~~L~L~~N-~i~~~~~~~-~~~L~~L~l~~N 349 (390)
T 3o6n_A 310 VERNQPQFDRLENLYLDHN-SIVTLKLST-HHTLKNLTLSHN 349 (390)
T ss_dssp CGGGHHHHTTCSEEECCSS-CCCCCCCCT-TCCCSEEECCSS
T ss_pred cCccccccCcCCEEECCCC-ccceeCchh-hccCCEEEcCCC
Confidence 7766667888888888887 477777432 233455555443
No 8
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=1.4e-22 Score=209.60 Aligned_cols=335 Identities=16% Similarity=0.185 Sum_probs=220.8
Q ss_pred EEecCcccccCCCCCCcccceEEEeeccccccc--CCCCCCCCceEEEeecCCcc-ccCchhhhCCCCCcEEEcCCCCCc
Q 044595 164 FVNAGVGLVEAPDVTGWEKARRLSLMHNQITNL--SEIPTCPHLLTFFLNKNRFQ-MIPNDFFQFMPSLKVLNLSYSKLT 240 (558)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l--~~~~~~~~Lr~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~l~ 240 (558)
+...+.+....+.+ .+++++|++++|.+..+ ..+..+++|++|++++|.+. .+++..+..+++|++|++++|.++
T Consensus 15 ~~c~~~~l~~lp~l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~ 92 (455)
T 3v47_A 15 AICINRGLHQVPEL--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL 92 (455)
T ss_dssp EECCSSCCSSCCCC--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTC
T ss_pred cCcCCCCcccCCCC--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccC
Confidence 33444455555552 27899999999999886 34789999999999999886 677777899999999999999998
Q ss_pred cc-CcccCCCCCCCeEeccCCCCCC-cchh--hhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCCccccc
Q 044595 241 SL-PLGISKLVSLQHLDLSESDIEE-LPGE--LKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEA 316 (558)
Q Consensus 241 ~l-p~~i~~L~~L~~L~l~~~~l~~-lp~~--i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~ 316 (558)
.+ |..++++++|++|++++|.++. .|.. ++.+++|++|++++|......|...++++++|++|++.++........
T Consensus 93 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 172 (455)
T 3v47_A 93 QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEE 172 (455)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTT
T ss_pred ccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChh
Confidence 66 7889999999999999999885 4544 889999999999998543334655578999999999998866432211
Q ss_pred ccCC--------------cccCC-----cchhHHHhccCCCcceEEEEEccchhH-HHHhccccccccccceeeeeccCC
Q 044595 317 SKDS--------------SLFGG-----GEFIVEELLGLKSLEVISFTLRSSHGL-QMILSSDQLRSCTRALSFQCFNDS 376 (558)
Q Consensus 317 ~~~~--------------~~~~~-----~~~~~~~L~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~ 376 (558)
.... .+.+. .......+..+++|+.|+++.+..... +...........++.+.+.++...
T Consensus 173 ~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 252 (455)
T 3v47_A 173 DLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNM 252 (455)
T ss_dssp TSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTT
T ss_pred hhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccc
Confidence 1000 00000 000111233456788888776654321 111111111125666666654322
Q ss_pred Cc---------ccccchh--hhhhhhhhhhccccccceeEeccCCcccccccccccEEEEcCCCCCCCch--hhhccCCC
Q 044595 377 TS---------LEVSALA--DLKQLKMLRIARSEILEELKMDCAGEVRQFVFHSLNKVEIYGCSKLKDLT--FLVFAPNL 443 (558)
Q Consensus 377 ~~---------~~~~~l~--~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~--~l~~l~~L 443 (558)
.. .....+. ..++|+.|+++++ .+....+.... .+++|++|+++++ .+..++ .++.+++|
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~-----~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L 325 (455)
T 3v47_A 253 GSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKS-KIFALLKSVFS-----HFTDLEQLTLAQN-EINKIDDNAFWGLTHL 325 (455)
T ss_dssp SCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSS-CCCEECTTTTT-----TCTTCCEEECTTS-CCCEECTTTTTTCTTC
T ss_pred ccccchhhhccCcccccccccccCceEEEecCc-cccccchhhcc-----cCCCCCEEECCCC-cccccChhHhcCcccC
Confidence 11 0000111 1357888888877 44444443333 2788888888888 565542 56788888
Q ss_pred ceEEEecCchhHHHhhcCccCCcccccccCCCCcccceeeccCccccccc-ccCCCCCCCcceEeeecCCCCcCCCCCC
Q 044595 444 KSIKVTGSHAMEAIISVGKFAEVPEVMANLNPFAKLQNLEVIGAINLKSI-YWKPLRFPHLKTMSFFHCNKLKMLPLDS 521 (558)
Q Consensus 444 ~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~-~~~~~~l~~L~~L~i~~C~~L~~lP~~~ 521 (558)
+.|++++|.. +.+ .+..+..+++|++|+++++. +..+ +.....+++|++|++++| +++.+|...
T Consensus 326 ~~L~Ls~N~l-~~~-----------~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~ 390 (455)
T 3v47_A 326 LKLNLSQNFL-GSI-----------DSRMFENLDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALDTN-QLKSVPDGI 390 (455)
T ss_dssp CEEECCSSCC-CEE-----------CGGGGTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCSCCCTTT
T ss_pred CEEECCCCcc-CCc-----------ChhHhcCcccCCEEECCCCc-ccccChhhccccccccEEECCCC-ccccCCHhH
Confidence 8888888754 211 12345678888888888864 4444 445667888888888885 777777654
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.90 E-value=1.5e-23 Score=229.48 Aligned_cols=322 Identities=13% Similarity=0.140 Sum_probs=213.1
Q ss_pred CCCCcccceEEEeecccccc------------------cCC-CC--CCCCceEEEeecCCccccCchhhhCCCCCcEEEc
Q 044595 176 DVTGWEKARRLSLMHNQITN------------------LSE-IP--TCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNL 234 (558)
Q Consensus 176 ~~~~~~~lr~L~l~~~~~~~------------------l~~-~~--~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l 234 (558)
.+..+++++.|++++|.+.. +|. +. .+++|++|++++|.+....+..+.++++|++|++
T Consensus 443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~L 522 (876)
T 4ecn_A 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNI 522 (876)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEEC
T ss_pred HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEEC
Confidence 46677889999999998887 654 44 7899999999988765433344788999999999
Q ss_pred CCCC-Ccc--cCcccCCCC-------CCCeEeccCCCCCCcch--hhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcE
Q 044595 235 SYSK-LTS--LPLGISKLV-------SLQHLDLSESDIEELPG--ELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHV 302 (558)
Q Consensus 235 ~~~~-l~~--lp~~i~~L~-------~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~ 302 (558)
++|. ++. +|..++++. +|++|++++|.+..+|. .++.+++|++|++++| .+..+| . ++++++|++
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N-~l~~lp-~-~~~L~~L~~ 599 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN-KVRHLE-A-FGTNVKLTD 599 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTS-CCCBCC-C-CCTTSEESE
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCC-Ccccch-h-hcCCCcceE
Confidence 9997 774 787766655 89999999998888888 8899999999999888 456888 3 888888999
Q ss_pred EEeeccCCCcccccccCCcccCCcchhHHHhccCCC-cceEEEEEccchhHHHHhcccc---------------------
Q 044595 303 LRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGLKS-LEVISFTLRSSHGLQMILSSDQ--------------------- 360 (558)
Q Consensus 303 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~-L~~L~l~~~~~~~~~~~~~~~~--------------------- 360 (558)
|++.++.... .+..+..+++ |+.|++..+....++.......
T Consensus 600 L~Ls~N~l~~----------------lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l 663 (876)
T 4ecn_A 600 LKLDYNQIEE----------------IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNI 663 (876)
T ss_dssp EECCSSCCSC----------------CCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSC
T ss_pred EECcCCcccc----------------chHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccc
Confidence 9888776542 2223444444 5555554444332221111100
Q ss_pred -------ccccccceeeeeccCCCcccccchhhhhhhhhhhhccccccceeEeccCCccc--ccccccccEEEEcCCCCC
Q 044595 361 -------LRSCTRALSFQCFNDSTSLEVSALADLKQLKMLRIARSEILEELKMDCAGEVR--QFVFHSLNKVEIYGCSKL 431 (558)
Q Consensus 361 -------~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~--~~~~~~L~~L~L~~~~~l 431 (558)
...+|+.|+++++.-. .++...+..+++|+.|+++++ .+..++........ ...+++|+.|+|++| .+
T Consensus 664 ~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L 740 (876)
T 4ecn_A 664 SCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KL 740 (876)
T ss_dssp SSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CC
T ss_pred hhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCC-CC
Confidence 0013555555543322 222222335677888888776 44455544332110 012348888888888 66
Q ss_pred CCchh-hh--ccCCCceEEEecCchhHHHhhcCccCCcccccccCCCCcccceeeccC------cccccccccCCCCCCC
Q 044595 432 KDLTF-LV--FAPNLKSIKVTGSHAMEAIISVGKFAEVPEVMANLNPFAKLQNLEVIG------AINLKSIYWKPLRFPH 502 (558)
Q Consensus 432 ~~l~~-l~--~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~------c~~L~~~~~~~~~l~~ 502 (558)
+.+|. +. .+++|+.|+|++|..- .++..+..+++|+.|+|++ +.-...+|.....+++
T Consensus 741 ~~lp~~l~~~~l~~L~~L~Ls~N~L~-------------~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~ 807 (876)
T 4ecn_A 741 TSLSDDFRATTLPYLSNMDVSYNCFS-------------SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPS 807 (876)
T ss_dssp CCCCGGGSTTTCTTCCEEECCSSCCS-------------SCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSS
T ss_pred ccchHHhhhccCCCcCEEEeCCCCCC-------------ccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCC
Confidence 66653 44 7888888888887642 2334566788999998876 3334556666677899
Q ss_pred cceEeeecCCCCcCCCCCCCcccccceeEecc
Q 044595 503 LKTMSFFHCNKLKMLPLDSNSAREHSIVIRGD 534 (558)
Q Consensus 503 L~~L~i~~C~~L~~lP~~~~~~~~~~~~i~~~ 534 (558)
|+.|++++| ++..+|.... ..++.+.+.++
T Consensus 808 L~~L~Ls~N-~L~~Ip~~l~-~~L~~LdLs~N 837 (876)
T 4ecn_A 808 LIQLQIGSN-DIRKVDEKLT-PQLYILDIADN 837 (876)
T ss_dssp CCEEECCSS-CCCBCCSCCC-SSSCEEECCSC
T ss_pred CCEEECCCC-CCCccCHhhc-CCCCEEECCCC
Confidence 999999887 4588888654 34555555554
No 10
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=1.9e-22 Score=210.05 Aligned_cols=275 Identities=21% Similarity=0.260 Sum_probs=211.7
Q ss_pred CCCCCcccceEEEeecccccccC--CCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCccc-CcccCCCCC
Q 044595 175 PDVTGWEKARRLSLMHNQITNLS--EIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSL-PLGISKLVS 251 (558)
Q Consensus 175 ~~~~~~~~lr~L~l~~~~~~~l~--~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~L~~ 251 (558)
..+..+++++.|++++|.+..+. .+..+++|++|++++|.+..+|...|.++++|++|++++|.++.+ |..+..+++
T Consensus 50 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 129 (477)
T 2id5_A 50 DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN 129 (477)
T ss_dssp TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHcccccc
Confidence 35778899999999999998873 478899999999999999999998889999999999999999966 668999999
Q ss_pred CCeEeccCCCCCCc-chhhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhH
Q 044595 252 LQHLDLSESDIEEL-PGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIV 330 (558)
Q Consensus 252 L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (558)
|++|++++|.+..+ |..+..+++|++|++++| .+..+|...+.++++|+.|++.++.... ...
T Consensus 130 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~i~~---------------~~~ 193 (477)
T 2id5_A 130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLNINA---------------IRD 193 (477)
T ss_dssp CCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEEEEESCCCCE---------------ECT
T ss_pred CCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcccCCCcEEeCCCCcCcE---------------eCh
Confidence 99999999999866 457899999999999998 7888888779999999999999886643 223
Q ss_pred HHhccCCCcceEEEEEccchh-HHHHhccccccccccceeeeeccCCCcccccchhhhhhhhhhhhccccccceeEeccC
Q 044595 331 EELLGLKSLEVISFTLRSSHG-LQMILSSDQLRSCTRALSFQCFNDSTSLEVSALADLKQLKMLRIARSEILEELKMDCA 409 (558)
Q Consensus 331 ~~L~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~ 409 (558)
..+..+++|+.|++..+.... ++.. .....+|+.|+++++. +...+...+..+++|+.|+++++ .+..++....
T Consensus 194 ~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~ 268 (477)
T 2id5_A 194 YSFKRLYRLKVLEISHWPYLDTMTPN---CLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYN-PISTIEGSML 268 (477)
T ss_dssp TCSCSCTTCCEEEEECCTTCCEECTT---TTTTCCCSEEEEESSC-CCSCCHHHHTTCTTCCEEECCSS-CCCEECTTSC
T ss_pred hhcccCcccceeeCCCCccccccCcc---cccCccccEEECcCCc-ccccCHHHhcCccccCeeECCCC-cCCccChhhc
Confidence 356778999999998654221 1111 0111268888888754 34444345677889999999887 4556655444
Q ss_pred CcccccccccccEEEEcCCCCCCCc--hhhhccCCCceEEEecCchhHHHhhcCccCCcccccccCCCCcccceeeccCc
Q 044595 410 GEVRQFVFHSLNKVEIYGCSKLKDL--TFLVFAPNLKSIKVTGSHAMEAIISVGKFAEVPEVMANLNPFAKLQNLEVIGA 487 (558)
Q Consensus 410 ~~~~~~~~~~L~~L~L~~~~~l~~l--~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 487 (558)
.. +++|+.|+|+++ .+..+ ..+..+++|+.|+|++|.. +.++. ..+..+++|++|+++++
T Consensus 269 ~~-----l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~-----------~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 269 HE-----LLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGNQL-TTLEE-----------SVFHSVGNLETLILDSN 330 (477)
T ss_dssp TT-----CTTCCEEECCSS-CCSEECTTTBTTCTTCCEEECCSSCC-SCCCG-----------GGBSCGGGCCEEECCSS
T ss_pred cc-----cccCCEEECCCC-ccceECHHHhcCcccCCEEECCCCcC-ceeCH-----------hHcCCCcccCEEEccCC
Confidence 32 788999999988 56654 3467889999999988754 22211 23466788999998865
Q ss_pred c
Q 044595 488 I 488 (558)
Q Consensus 488 ~ 488 (558)
+
T Consensus 331 ~ 331 (477)
T 2id5_A 331 P 331 (477)
T ss_dssp C
T ss_pred C
Confidence 4
No 11
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=1.6e-22 Score=204.88 Aligned_cols=282 Identities=15% Similarity=0.188 Sum_probs=223.5
Q ss_pred CCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCc-ccCCCCCCCeEeccCCCCCCcch-hhhcCCCCcEE
Q 044595 201 TCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPL-GISKLVSLQHLDLSESDIEELPG-ELKALVNLKCL 278 (558)
Q Consensus 201 ~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L 278 (558)
.+++++++++.++.+..+|..++..+++|++|++++|.++.+|. .++.+++|++|++++|.+..+|. .++.+++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 46899999999999999999989999999999999999998754 89999999999999999998864 48999999999
Q ss_pred eccCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhccCCCcceEEEEEccchhHHHHhcc
Q 044595 279 DLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGLKSLEVISFTLRSSHGLQMILSS 358 (558)
Q Consensus 279 ~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~ 358 (558)
++++| .+..+|..+++++++|++|++.++.... .....++.+++|+.|++..+......
T Consensus 123 ~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~---------------~~~~~~~~l~~L~~L~l~~n~l~~~~----- 181 (390)
T 3o6n_A 123 VLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLER---------------IEDDTFQATTSLQNLQLSSNRLTHVD----- 181 (390)
T ss_dssp ECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCB---------------CCTTTTSSCTTCCEEECCSSCCSBCC-----
T ss_pred ECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCc---------------cChhhccCCCCCCEEECCCCcCCccc-----
Confidence 99998 7889998867999999999999886642 22345778899999999877665432
Q ss_pred ccccccccceeeeeccCCCcccccchhhhhhhhhhhhccccccceeEeccCCcccccccccccEEEEcCCCCCCCchhhh
Q 044595 359 DQLRSCTRALSFQCFNDSTSLEVSALADLKQLKMLRIARSEILEELKMDCAGEVRQFVFHSLNKVEIYGCSKLKDLTFLV 438 (558)
Q Consensus 359 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~l~ 438 (558)
......++.++++++. +. .+...++|++|+++++ .+..++.. .+++|+.|+++++ .++++++++
T Consensus 182 ~~~l~~L~~L~l~~n~-l~-----~~~~~~~L~~L~l~~n-~l~~~~~~--------~~~~L~~L~l~~n-~l~~~~~l~ 245 (390)
T 3o6n_A 182 LSLIPSLFHANVSYNL-LS-----TLAIPIAVEELDASHN-SINVVRGP--------VNVELTILKLQHN-NLTDTAWLL 245 (390)
T ss_dssp GGGCTTCSEEECCSSC-CS-----EEECCSSCSEEECCSS-CCCEEECC--------CCSSCCEEECCSS-CCCCCGGGG
T ss_pred cccccccceeeccccc-cc-----ccCCCCcceEEECCCC-eeeecccc--------ccccccEEECCCC-CCcccHHHc
Confidence 1222367888887643 22 2344578999999987 55555432 2689999999999 788889999
Q ss_pred ccCCCceEEEecCchhHHHhhcCccCCcccccccCCCCcccceeeccCcccccccccCCCCCCCcceEeeecCCCCcCCC
Q 044595 439 FAPNLKSIKVTGSHAMEAIISVGKFAEVPEVMANLNPFAKLQNLEVIGAINLKSIYWKPLRFPHLKTMSFFHCNKLKMLP 518 (558)
Q Consensus 439 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~l~~L~~L~i~~C~~L~~lP 518 (558)
.+++|+.|++++|..-.. .+..+..+++|++|+++++ ++..++.....+++|++|++++| +++.+|
T Consensus 246 ~l~~L~~L~Ls~n~l~~~------------~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~ 311 (390)
T 3o6n_A 246 NYPGLVEVDLSYNELEKI------------MYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVE 311 (390)
T ss_dssp GCTTCSEEECCSSCCCEE------------ESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSS-CCCCCG
T ss_pred CCCCccEEECCCCcCCCc------------ChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCC-cceecC
Confidence 999999999999864221 1245678999999999985 67888877778999999999998 788887
Q ss_pred CCCC-cccccceeEec
Q 044595 519 LDSN-SAREHSIVIRG 533 (558)
Q Consensus 519 ~~~~-~~~~~~~~i~~ 533 (558)
.... ...++...+.+
T Consensus 312 ~~~~~l~~L~~L~L~~ 327 (390)
T 3o6n_A 312 RNQPQFDRLENLYLDH 327 (390)
T ss_dssp GGHHHHTTCSEEECCS
T ss_pred ccccccCcCCEEECCC
Confidence 6432 23344444444
No 12
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.89 E-value=4.5e-22 Score=213.61 Aligned_cols=145 Identities=21% Similarity=0.199 Sum_probs=117.8
Q ss_pred ecCcccccCCCCCCcccceEEEeecccccccC--CCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCccc-
Q 044595 166 NAGVGLVEAPDVTGWEKARRLSLMHNQITNLS--EIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSL- 242 (558)
Q Consensus 166 ~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~--~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l- 242 (558)
..+.+...++.. -.+++++|++++|.+..++ .+..+++|++|++++|.+..+++..|.++++|++|++++|.++.+
T Consensus 18 c~~~~l~~ip~~-~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~ 96 (606)
T 3vq2_A 18 CMDQKLSKVPDD-IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS 96 (606)
T ss_dssp CTTSCCSSCCTT-SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCC
T ss_pred ccCCCcccCCCC-CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccC
Confidence 334444444432 2378999999999998875 478899999999999999988877789999999999999999877
Q ss_pred CcccCCCCCCCeEeccCCCCCCcc-hhhhcCCCCcEEeccCCCCCC-cCchhhhcCCCCCcEEEeeccCCCc
Q 044595 243 PLGISKLVSLQHLDLSESDIEELP-GELKALVNLKCLDLEYTGNLI-TIPRQLISNLSRLHVLRMFGAGHNA 312 (558)
Q Consensus 243 p~~i~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~l~-~lp~~~i~~l~~L~~L~l~~~~~~~ 312 (558)
|..++++++|++|++++|.+..+| ..++.+++|++|++++|.... .+|.. ++++++|++|++.++....
T Consensus 97 p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 97 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp TTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCCE
T ss_pred hhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCccee
Confidence 788999999999999999998776 568999999999999984332 46766 8999999999998876543
No 13
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.89 E-value=7.2e-23 Score=219.84 Aligned_cols=108 Identities=27% Similarity=0.390 Sum_probs=78.5
Q ss_pred CCCCcccceEEEeecccccccC--CCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccC-cccCCCCCC
Q 044595 176 DVTGWEKARRLSLMHNQITNLS--EIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLP-LGISKLVSL 252 (558)
Q Consensus 176 ~~~~~~~lr~L~l~~~~~~~l~--~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L 252 (558)
.+..++++++|++++|.+..++ .+..+++|++|++++|.+..+++..+.++++|++|++++|.++.+| ..++++++|
T Consensus 51 ~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 130 (606)
T 3vq2_A 51 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITL 130 (606)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTC
T ss_pred hccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCC
Confidence 4566777777777777777653 3567777777777777777775555777777777777777777664 567777777
Q ss_pred CeEeccCCCCC--CcchhhhcCCCCcEEeccCC
Q 044595 253 QHLDLSESDIE--ELPGELKALVNLKCLDLEYT 283 (558)
Q Consensus 253 ~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~ 283 (558)
++|++++|.+. .+|..++++++|++|++++|
T Consensus 131 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n 163 (606)
T 3vq2_A 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163 (606)
T ss_dssp CEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS
T ss_pred CEEeCCCCcccceechHhHhhcCCCCEEEccCC
Confidence 77777777766 46777777777777777776
No 14
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.89 E-value=2.3e-22 Score=215.84 Aligned_cols=307 Identities=17% Similarity=0.179 Sum_probs=189.3
Q ss_pred ccceEEEeecccccccC--CCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCccc-CcccCCCCCCCeEec
Q 044595 181 EKARRLSLMHNQITNLS--EIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSL-PLGISKLVSLQHLDL 257 (558)
Q Consensus 181 ~~lr~L~l~~~~~~~l~--~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l 257 (558)
..+++|++++|.+..++ .+..+++|++|++++|.+..+++..|.++++|++|++++|.++.+ |..++++++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 46888888888888763 477888888888888888887766688888888888888888765 667888888888888
Q ss_pred cCCCCCCc-chhhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhccC
Q 044595 258 SESDIEEL-PGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGL 336 (558)
Q Consensus 258 ~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l 336 (558)
++|.++.+ |..++.+++|++|++++| .+..++...+..+++|++|++.++.... .....++.+
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~---------------~~~~~~~~l 176 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNNAIHY---------------LSKEDMSSL 176 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSS-CCCCCCCCTTCCCTTCCEEECCSSCCCE---------------ECHHHHHTT
T ss_pred cccCcccCCcchhccCCcccEEECCCC-cccccCcccccCCcccCEEEcccCcccc---------------cChhhhhhh
Confidence 88888877 556888888888888887 4555421114558888888888775532 234445556
Q ss_pred CCcc--eEEEEEccchhHHH---------------------Hhcccc---------------------------c-cccc
Q 044595 337 KSLE--VISFTLRSSHGLQM---------------------ILSSDQ---------------------------L-RSCT 365 (558)
Q Consensus 337 ~~L~--~L~l~~~~~~~~~~---------------------~~~~~~---------------------------~-~~~L 365 (558)
++|+ .|++..+....... ...... + ...+
T Consensus 177 ~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L 256 (606)
T 3t6q_A 177 QQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSV 256 (606)
T ss_dssp TTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEE
T ss_pred cccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCce
Confidence 6665 33333222211110 000000 0 0034
Q ss_pred cceeeeeccCCCcccccchhhhhhhhhhhhccccccceeEeccCCcccccccccccEEEEcCCCCCCCc--hhhhccCCC
Q 044595 366 RALSFQCFNDSTSLEVSALADLKQLKMLRIARSEILEELKMDCAGEVRQFVFHSLNKVEIYGCSKLKDL--TFLVFAPNL 443 (558)
Q Consensus 366 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l--~~l~~l~~L 443 (558)
+.++++++. +...+...+..+++|++|+++++ .+..++..... +++|++|+++++ .+..+ ..++.+++|
T Consensus 257 ~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~lp~~l~~------l~~L~~L~l~~n-~l~~~~~~~~~~l~~L 327 (606)
T 3t6q_A 257 ESINLQKHY-FFNISSNTFHCFSGLQELDLTAT-HLSELPSGLVG------LSTLKKLVLSAN-KFENLCQISASNFPSL 327 (606)
T ss_dssp EEEECTTCC-CSSCCTTTTTTCTTCSEEECTTS-CCSCCCSSCCS------CTTCCEEECTTC-CCSBGGGGCGGGCTTC
T ss_pred eEEEeecCc-cCccCHHHhccccCCCEEeccCC-ccCCCChhhcc------cccCCEEECccC-CcCcCchhhhhccCcC
Confidence 445554432 22333334667788888888877 45555554433 678888888877 45553 246677777
Q ss_pred ceEEEecCchhHHHhhc--CccCCcc----------cc---cccCCCCcccceeeccCcccccccccCCCCCCCcceEee
Q 044595 444 KSIKVTGSHAMEAIISV--GKFAEVP----------EV---MANLNPFAKLQNLEVIGAINLKSIYWKPLRFPHLKTMSF 508 (558)
Q Consensus 444 ~~L~l~~c~~l~~~~~~--~~~~~~~----------~~---~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~l~~L~~L~i 508 (558)
+.|++++|.....++.. ..+..+. .. +..+..+++|++|+++++.-....+.....+++|++|++
T Consensus 328 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 407 (606)
T 3t6q_A 328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDL 407 (606)
T ss_dssp SEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEEC
T ss_pred CEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEEC
Confidence 77777777543222110 0001110 11 234556677777777765433333334456677777777
Q ss_pred ecCC
Q 044595 509 FHCN 512 (558)
Q Consensus 509 ~~C~ 512 (558)
++|.
T Consensus 408 ~~n~ 411 (606)
T 3t6q_A 408 AFTR 411 (606)
T ss_dssp TTCC
T ss_pred CCCc
Confidence 7763
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.89 E-value=2.9e-23 Score=223.22 Aligned_cols=322 Identities=12% Similarity=0.137 Sum_probs=201.6
Q ss_pred CCCcccceEEEeecccccc------------------cCC-CC--CCCCceEEEeecCCccccCchhhhCCCCCcEEEcC
Q 044595 177 VTGWEKARRLSLMHNQITN------------------LSE-IP--TCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLS 235 (558)
Q Consensus 177 ~~~~~~lr~L~l~~~~~~~------------------l~~-~~--~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 235 (558)
+..++++++|++++|.+.. +|. +. .+++|++|++++|.+....+..+.++++|++|+++
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence 5667788888888888877 654 55 78888888888887654333447788888888888
Q ss_pred CCC-Ccc--cCcccCCC------CCCCeEeccCCCCCCcch--hhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEE
Q 044595 236 YSK-LTS--LPLGISKL------VSLQHLDLSESDIEELPG--ELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLR 304 (558)
Q Consensus 236 ~~~-l~~--lp~~i~~L------~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~ 304 (558)
+|. ++. +|..++.+ ++|++|++++|.++.+|. .++.+++|++|++++|.....+| . ++.+++|++|+
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~L~~L~ 359 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEIKLASLN 359 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEEEESEEE
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCCCCCEEE
Confidence 887 774 78777776 888888888888888887 78888888888888874333777 3 77777788887
Q ss_pred eeccCCCcccccccCCcccCCcchhHHHhccCCC-cceEEEEEccchhHHHHhcccc-----------------------
Q 044595 305 MFGAGHNAFDEASKDSSLFGGGEFIVEELLGLKS-LEVISFTLRSSHGLQMILSSDQ----------------------- 360 (558)
Q Consensus 305 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~-L~~L~l~~~~~~~~~~~~~~~~----------------------- 360 (558)
+.++.... .+..+..+++ |+.|++..+....++.......
T Consensus 360 L~~N~l~~----------------lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 423 (636)
T 4eco_A 360 LAYNQITE----------------IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD 423 (636)
T ss_dssp CCSSEEEE----------------CCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSC
T ss_pred CCCCcccc----------------ccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhc
Confidence 77664431 1222333333 4444443333222221110000
Q ss_pred -------ccccccceeeeeccCCCcccccchhhhhhhhhhhhccccccceeEeccCCccc--ccccccccEEEEcCCCCC
Q 044595 361 -------LRSCTRALSFQCFNDSTSLEVSALADLKQLKMLRIARSEILEELKMDCAGEVR--QFVFHSLNKVEIYGCSKL 431 (558)
Q Consensus 361 -------~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~--~~~~~~L~~L~L~~~~~l 431 (558)
...+|+.|+++++.- ..++...+..+++|+.|+++++ .+..++........ ...+++|+.|+++++ .+
T Consensus 424 ~~~~~~~~~~~L~~L~Ls~N~l-~~lp~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l 500 (636)
T 4eco_A 424 PLDPTPFKGINVSSINLSNNQI-SKFPKELFSTGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KL 500 (636)
T ss_dssp TTCSSCCCCCCEEEEECCSSCC-CSCCTHHHHTTCCCSEEECCSS-CCSBCCSSSSEETTEECTTGGGCCEEECCSS-CC
T ss_pred ccccccccCCCCCEEECcCCcc-CcCCHHHHccCCCCCEEECCCC-CCCCcCHHHhccccccccccCCccEEECcCC-cC
Confidence 112455556655332 2233222344677777777776 34455444332100 001238888888888 56
Q ss_pred CCchh-hh--ccCCCceEEEecCchhHHHhhcCccCCcccccccCCCCcccceeeccC------cccccccccCCCCCCC
Q 044595 432 KDLTF-LV--FAPNLKSIKVTGSHAMEAIISVGKFAEVPEVMANLNPFAKLQNLEVIG------AINLKSIYWKPLRFPH 502 (558)
Q Consensus 432 ~~l~~-l~--~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~------c~~L~~~~~~~~~l~~ 502 (558)
+.+|. +. .+++|+.|++++|..- .++..+..+++|++|++++ +.-...+|.....+++
T Consensus 501 ~~lp~~~~~~~l~~L~~L~Ls~N~l~-------------~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~ 567 (636)
T 4eco_A 501 TKLSDDFRATTLPYLVGIDLSYNSFS-------------KFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPS 567 (636)
T ss_dssp CBCCGGGSTTTCTTCCEEECCSSCCS-------------SCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSS
T ss_pred CccChhhhhccCCCcCEEECCCCCCC-------------CcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCC
Confidence 66553 44 7888888888887652 2233556788888888854 3335566666677888
Q ss_pred cceEeeecCCCCcCCCCCCCcccccceeEecc
Q 044595 503 LKTMSFFHCNKLKMLPLDSNSAREHSIVIRGD 534 (558)
Q Consensus 503 L~~L~i~~C~~L~~lP~~~~~~~~~~~~i~~~ 534 (558)
|++|++++| +++.+|.... ..++...+.++
T Consensus 568 L~~L~Ls~N-~l~~ip~~~~-~~L~~L~Ls~N 597 (636)
T 4eco_A 568 LTQLQIGSN-DIRKVNEKIT-PNISVLDIKDN 597 (636)
T ss_dssp CCEEECCSS-CCCBCCSCCC-TTCCEEECCSC
T ss_pred CCEEECCCC-cCCccCHhHh-CcCCEEECcCC
Confidence 888888887 4588887644 44555555543
No 16
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=8.2e-23 Score=218.36 Aligned_cols=131 Identities=16% Similarity=0.266 Sum_probs=98.6
Q ss_pred cccceEEEeecccccccCC--CCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCc-ccCCCCCCCeEe
Q 044595 180 WEKARRLSLMHNQITNLSE--IPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPL-GISKLVSLQHLD 256 (558)
Q Consensus 180 ~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~ 256 (558)
+.+++.+++.++.+..++. +..+++|++|++++|.+..+++..+..+++|++|++++|.++.+|. .++++++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 4677788888877777765 4567788888888888887777667788888888888888876654 457888888888
Q ss_pred ccCCCCCCcchh-hhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCC
Q 044595 257 LSESDIEELPGE-LKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHN 311 (558)
Q Consensus 257 l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 311 (558)
+++|.++.+|.. ++.+++|++|++++| .+..+++..++++++|++|++.++...
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 184 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLT 184 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSCCS
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCCCC
Confidence 888888877766 477888888888877 555666555778888888888776554
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.89 E-value=1e-21 Score=206.80 Aligned_cols=124 Identities=27% Similarity=0.367 Sum_probs=106.2
Q ss_pred ccceEEEeecccccccC--CCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcccCCCCCCCeEecc
Q 044595 181 EKARRLSLMHNQITNLS--EIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHLDLS 258 (558)
Q Consensus 181 ~~lr~L~l~~~~~~~l~--~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~ 258 (558)
+++++|++++|.+..++ .+..+++|++|++++|.+..+++..+.++++|++|++++|.++.+|.. .+++|++|+++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~ 98 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLS 98 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEecc
Confidence 78999999999998875 478899999999999999988776789999999999999999999876 89999999999
Q ss_pred CCCCCC--cchhhhcCCCCcEEeccCCCCCCcCchhhhcCCCCC--cEEEeeccCC
Q 044595 259 ESDIEE--LPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRL--HVLRMFGAGH 310 (558)
Q Consensus 259 ~~~l~~--lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L--~~L~l~~~~~ 310 (558)
+|.++. +|..++.+++|++|++++| .+.. ..++.+++| ++|++.++..
T Consensus 99 ~N~l~~~~~p~~~~~l~~L~~L~L~~n-~l~~---~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 99 FNAFDALPICKEFGNMSQLKFLGLSTT-HLEK---SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp SSCCSSCCCCGGGGGCTTCCEEEEEES-SCCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred CCccccccchhhhccCCcceEEEecCc-ccch---hhccccccceeeEEEeecccc
Confidence 998885 5788999999999999988 3443 226778888 9999988765
No 18
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.88 E-value=1.8e-22 Score=215.19 Aligned_cols=124 Identities=25% Similarity=0.320 Sum_probs=71.0
Q ss_pred CCCCcccceEEEeecccccccC--CCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCc-ccCCCCCC
Q 044595 176 DVTGWEKARRLSLMHNQITNLS--EIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPL-GISKLVSL 252 (558)
Q Consensus 176 ~~~~~~~lr~L~l~~~~~~~l~--~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L 252 (558)
.+..++++++|++++|.+..++ .+..+++|++|++++|.+..+++..+..+++|++|++++|.++.+|. .++++++|
T Consensus 47 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 126 (570)
T 2z63_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126 (570)
T ss_dssp TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTC
T ss_pred HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccc
Confidence 3445556666666666655543 24556666666666666666655556666666666666666665543 45666666
Q ss_pred CeEeccCCCCCC--cchhhhcCCCCcEEeccCCCCCCcCchhhhcCCCCC
Q 044595 253 QHLDLSESDIEE--LPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRL 300 (558)
Q Consensus 253 ~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L 300 (558)
++|++++|.+.. +|..++++++|++|++++| .+..++...++.+++|
T Consensus 127 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L 175 (570)
T 2z63_A 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQM 175 (570)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS-CCCEECGGGGHHHHTC
T ss_pred cEEecCCCccceecChhhhcccCCCCEEeCcCC-ccceecHHHccchhcc
Confidence 666666665553 4566666666666666665 3344433324444444
No 19
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.88 E-value=1.1e-21 Score=210.45 Aligned_cols=267 Identities=16% Similarity=0.137 Sum_probs=176.2
Q ss_pred CCCCCcccceEEEeecccccccC--CCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCccc-CcccCCCCC
Q 044595 175 PDVTGWEKARRLSLMHNQITNLS--EIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSL-PLGISKLVS 251 (558)
Q Consensus 175 ~~~~~~~~lr~L~l~~~~~~~l~--~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~L~~ 251 (558)
..+..++++++|++++|.+..+. .+..+++|++|++++|.+..+++..+.++++|++|++++|.++.+ |..++++++
T Consensus 51 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~ 130 (606)
T 3t6q_A 51 TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT 130 (606)
T ss_dssp TTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTT
T ss_pred hHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCc
Confidence 35778899999999999988763 478899999999999999988777789999999999999999987 678899999
Q ss_pred CCeEeccCCCCCCcc-hhhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCc--EEEeeccCCCcccccccCC------cc
Q 044595 252 LQHLDLSESDIEELP-GELKALVNLKCLDLEYTGNLITIPRQLISNLSRLH--VLRMFGAGHNAFDEASKDS------SL 322 (558)
Q Consensus 252 L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~--~L~l~~~~~~~~~~~~~~~------~~ 322 (558)
|++|++++|.+..++ +.+..+++|++|++++| .+..++...++.+++|+ +|++.++............ .+
T Consensus 131 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l 209 (606)
T 3t6q_A 131 LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN-AIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNF 209 (606)
T ss_dssp CCEEECCSSCCCCCCCCTTCCCTTCCEEECCSS-CCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEEC
T ss_pred ccEEECCCCcccccCcccccCCcccCEEEcccC-cccccChhhhhhhcccceeEEecCCCccCccChhHhhhcccccccc
Confidence 999999999988762 34445899999999998 66677666688999999 7777776544322111000 00
Q ss_pred c------------------------------------------------------CCcchhHHHhccCCCcceEEEEEcc
Q 044595 323 F------------------------------------------------------GGGEFIVEELLGLKSLEVISFTLRS 348 (558)
Q Consensus 323 ~------------------------------------------------------~~~~~~~~~L~~l~~L~~L~l~~~~ 348 (558)
. .........++.+++|+.|++..+.
T Consensus 210 ~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 289 (606)
T 3t6q_A 210 GGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH 289 (606)
T ss_dssp TTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC
T ss_pred CCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCc
Confidence 0 0000111224556667777666555
Q ss_pred chhHHHHhccccccccccceeeeeccCCCcccccchhhhhhhhhhhhccccccceeEeccCCcccccccccccEEEEcCC
Q 044595 349 SHGLQMILSSDQLRSCTRALSFQCFNDSTSLEVSALADLKQLKMLRIARSEILEELKMDCAGEVRQFVFHSLNKVEIYGC 428 (558)
Q Consensus 349 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~~ 428 (558)
...++... ....+|+.|+++++.-. ......+..+++|+.|+++++.....++..... .+++|++|+++++
T Consensus 290 l~~lp~~l---~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-----~l~~L~~L~l~~n 360 (606)
T 3t6q_A 290 LSELPSGL---VGLSTLKKLVLSANKFE-NLCQISASNFPSLTHLSIKGNTKRLELGTGCLE-----NLENLRELDLSHD 360 (606)
T ss_dssp CSCCCSSC---CSCTTCCEEECTTCCCS-BGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTT-----TCTTCCEEECCSS
T ss_pred cCCCChhh---cccccCCEEECccCCcC-cCchhhhhccCcCCEEECCCCCcccccchhhhh-----ccCcCCEEECCCC
Confidence 44333221 12235666776654322 222234566677777777766443344433222 2667777777766
Q ss_pred CCCCCch----hhhccCCCceEEEecCc
Q 044595 429 SKLKDLT----FLVFAPNLKSIKVTGSH 452 (558)
Q Consensus 429 ~~l~~l~----~l~~l~~L~~L~l~~c~ 452 (558)
.+.... .++.+++|+.|++++|.
T Consensus 361 -~l~~~~~~~~~~~~l~~L~~L~l~~n~ 387 (606)
T 3t6q_A 361 -DIETSDCCNLQLRNLSHLQSLNLSYNE 387 (606)
T ss_dssp -CCCEEEESTTTTTTCTTCCEEECCSCS
T ss_pred -ccccccCcchhcccCCCCCEEECCCCc
Confidence 444432 35666777777777664
No 20
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=2.1e-22 Score=207.39 Aligned_cols=285 Identities=17% Similarity=0.190 Sum_probs=127.9
Q ss_pred CCCcccceEEEeecccccccCCCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcccCCCCCCCeEe
Q 044595 177 VTGWEKARRLSLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHLD 256 (558)
Q Consensus 177 ~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~ 256 (558)
+..++++++|++++|.+..++ +..+++|++|++++|.+..++ +..+++|++|++++|.++.+| ++.+++|++|+
T Consensus 60 l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~ 133 (457)
T 3bz5_A 60 IEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLN 133 (457)
T ss_dssp GGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEE
T ss_pred hcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEE
Confidence 334444444444444444443 444444444444444444432 344444444444444444443 44444444444
Q ss_pred ccCCCCCCcchhhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhccC
Q 044595 257 LSESDIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGL 336 (558)
Q Consensus 257 l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l 336 (558)
+++|.++.+| ++.+++|++|++++|..+..++ ++.+++|++|++.++.... +. +..+
T Consensus 134 l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~-----------------l~-l~~l 190 (457)
T 3bz5_A 134 CARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITE-----------------LD-VSQN 190 (457)
T ss_dssp CTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCC-----------------CC-CTTC
T ss_pred CCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccce-----------------ec-cccC
Confidence 4444444432 3444444444444443333332 3444444444444443221 01 4445
Q ss_pred CCcceEEEEEccchhHHHHhccccccccccceeeeeccCCCcccccchhhhhhhhhhhhccccccceeEeccCCcccccc
Q 044595 337 KSLEVISFTLRSSHGLQMILSSDQLRSCTRALSFQCFNDSTSLEVSALADLKQLKMLRIARSEILEELKMDCAGEVRQFV 416 (558)
Q Consensus 337 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~ 416 (558)
++|+.|++..+...... ......|+.|+++++.- ...+ +..+++|+.|+++++ .+..++.. .
T Consensus 191 ~~L~~L~l~~N~l~~~~-----l~~l~~L~~L~Ls~N~l-~~ip---~~~l~~L~~L~l~~N-~l~~~~~~--------~ 252 (457)
T 3bz5_A 191 KLLNRLNCDTNNITKLD-----LNQNIQLTFLDCSSNKL-TEID---VTPLTQLTYFDCSVN-PLTELDVS--------T 252 (457)
T ss_dssp TTCCEEECCSSCCSCCC-----CTTCTTCSEEECCSSCC-SCCC---CTTCTTCSEEECCSS-CCSCCCCT--------T
T ss_pred CCCCEEECcCCcCCeec-----cccCCCCCEEECcCCcc-cccC---ccccCCCCEEEeeCC-cCCCcCHH--------H
Confidence 55555555544443331 11112455555555322 2222 445556666666555 33332211 1
Q ss_pred ccccc----------EEEEcCCCCCCCchhhhccCCCceEEEecCchhHHHhhcCccCCcccccccCCCCcccceeeccC
Q 044595 417 FHSLN----------KVEIYGCSKLKDLTFLVFAPNLKSIKVTGSHAMEAIISVGKFAEVPEVMANLNPFAKLQNLEVIG 486 (558)
Q Consensus 417 ~~~L~----------~L~L~~~~~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 486 (558)
+++|+ .|++++|..+..++ .+.+++|+.|++++|..++.++.. ...+..+ .+..+++|++|++++
T Consensus 253 l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~~~--~~~L~~L--~l~~~~~L~~L~L~~ 327 (457)
T 3bz5_A 253 LSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQLYLLDCQ--AAGITEL--DLSQNPKLVYLYLNN 327 (457)
T ss_dssp CTTCCEEECTTCCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEEECT--TCCCSCC--CCTTCTTCCEEECTT
T ss_pred CCCCCEEeccCCCCCEEECCCCccCCccc-ccccccCCEEECCCCcccceeccC--CCcceEe--chhhcccCCEEECCC
Confidence 33333 33333333222232 345566666666666655544321 1111111 234456666666655
Q ss_pred cccccccccCCCCCCCcceEeeecCCCCcCC
Q 044595 487 AINLKSIYWKPLRFPHLKTMSFFHCNKLKML 517 (558)
Q Consensus 487 c~~L~~~~~~~~~l~~L~~L~i~~C~~L~~l 517 (558)
+ +++.++ ...+++|+.|+++++ +++.+
T Consensus 328 N-~l~~l~--l~~l~~L~~L~l~~N-~l~~l 354 (457)
T 3bz5_A 328 T-ELTELD--VSHNTKLKSLSCVNA-HIQDF 354 (457)
T ss_dssp C-CCSCCC--CTTCTTCSEEECCSS-CCCBC
T ss_pred C-cccccc--cccCCcCcEEECCCC-CCCCc
Confidence 3 344443 456677777777653 44443
No 21
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=4.4e-22 Score=196.89 Aligned_cols=295 Identities=16% Similarity=0.162 Sum_probs=208.8
Q ss_pred ccceEEEeecccccccCCCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCccc-CcccCCCCCCCeEeccC
Q 044595 181 EKARRLSLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSL-PLGISKLVSLQHLDLSE 259 (558)
Q Consensus 181 ~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~ 259 (558)
.+++.++++++.+..+|.. -.+++++|++++|.+..+++..+.++++|++|++++|.++.+ |..++++++|++|++++
T Consensus 33 c~l~~l~~~~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKE-ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp EETTEEECCSSCCSSCCSC-CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred ccCCEEECCCCCccccCCC-CCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 4788999999988887752 247899999999999999887789999999999999999977 77899999999999999
Q ss_pred CCCCCcchhhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhccCCCc
Q 044595 260 SDIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGLKSL 339 (558)
Q Consensus 260 ~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L 339 (558)
|.++.+|..+. ++|++|++++| .+..+|...++++++|++|++.++.... .......+..+ +|
T Consensus 112 n~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~-------------~~~~~~~~~~l-~L 174 (332)
T 2ft3_A 112 NHLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLEN-------------SGFEPGAFDGL-KL 174 (332)
T ss_dssp SCCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBG-------------GGSCTTSSCSC-CC
T ss_pred CcCCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCcccc-------------CCCCcccccCC-cc
Confidence 99999998766 89999999998 6778887778999999999999876532 11223344555 78
Q ss_pred ceEEEEEccchhHHHHhccccccccccceeeeeccCCCcccccchhhhhhhhhhhhccccccceeEeccCCccccccccc
Q 044595 340 EVISFTLRSSHGLQMILSSDQLRSCTRALSFQCFNDSTSLEVSALADLKQLKMLRIARSEILEELKMDCAGEVRQFVFHS 419 (558)
Q Consensus 340 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~ 419 (558)
+.|++..+....++.. ....|+.|+++++. +.......+..+++|+.|+++++ .+..+++.... .+++
T Consensus 175 ~~L~l~~n~l~~l~~~-----~~~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~~~-----~l~~ 242 (332)
T 2ft3_A 175 NYLRISEAKLTGIPKD-----LPETLNELHLDHNK-IQAIELEDLLRYSKLYRLGLGHN-QIRMIENGSLS-----FLPT 242 (332)
T ss_dssp SCCBCCSSBCSSCCSS-----SCSSCSCCBCCSSC-CCCCCTTSSTTCTTCSCCBCCSS-CCCCCCTTGGG-----GCTT
T ss_pred CEEECcCCCCCccCcc-----ccCCCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCC-cCCcCChhHhh-----CCCC
Confidence 8888877765554321 12478888887643 33333345777888999999887 45544443332 3788
Q ss_pred ccEEEEcCCCCCCCch-hhhccCCCceEEEecCchhHHHhhcCccCCcccccccCCCCcccceeeccCcccc--cccccC
Q 044595 420 LNKVEIYGCSKLKDLT-FLVFAPNLKSIKVTGSHAMEAIISVGKFAEVPEVMANLNPFAKLQNLEVIGAINL--KSIYWK 496 (558)
Q Consensus 420 L~~L~L~~~~~l~~l~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L--~~~~~~ 496 (558)
|++|+++++ .++.+| .++.+++|+.|++++|.. +.+.. ..+.. . .....+++|+.|++.+++-. ...+..
T Consensus 243 L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~l-~~~~~-~~~~~---~-~~~~~~~~l~~L~l~~N~~~~~~~~~~~ 315 (332)
T 2ft3_A 243 LRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTNNI-TKVGV-NDFCP---V-GFGVKRAYYNGISLFNNPVPYWEVQPAT 315 (332)
T ss_dssp CCEEECCSS-CCCBCCTTGGGCTTCCEEECCSSCC-CBCCT-TSSSC---S-SCCSSSCCBSEEECCSSSSCGGGSCGGG
T ss_pred CCEEECCCC-cCeecChhhhcCccCCEEECCCCCC-CccCh-hHccc---c-ccccccccccceEeecCcccccccCccc
Confidence 999999888 666665 478888999999988764 22211 00000 0 01123677888888887632 122223
Q ss_pred CCCCCCcceEeeecCC
Q 044595 497 PLRFPHLKTMSFFHCN 512 (558)
Q Consensus 497 ~~~l~~L~~L~i~~C~ 512 (558)
...+++|+.+++.++.
T Consensus 316 ~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 316 FRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GTTBCCSTTEEC----
T ss_pred ccccchhhhhhccccc
Confidence 3456778888877764
No 22
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.88 E-value=1.1e-22 Score=218.76 Aligned_cols=230 Identities=13% Similarity=0.183 Sum_probs=166.2
Q ss_pred CCCCCCceEEEeecCCccc------------------cCchhhh--CCCCCcEEEcCCCCCc-ccCcccCCCCCCCeEec
Q 044595 199 IPTCPHLLTFFLNKNRFQM------------------IPNDFFQ--FMPSLKVLNLSYSKLT-SLPLGISKLVSLQHLDL 257 (558)
Q Consensus 199 ~~~~~~Lr~L~l~~~~~~~------------------~~~~~~~--~l~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l 257 (558)
+..+++|++|++++|.+.. +|.. +. ++++|++|++++|.+. .+|..++++++|++|++
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 280 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV 280 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEEC
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEEC
Confidence 5678999999999999988 7877 56 8999999999999866 78999999999999999
Q ss_pred cCCC-CC--CcchhhhcC------CCCcEEeccCCCCCCcCch--hhhcCCCCCcEEEeeccCCCcccccccCCcccCCc
Q 044595 258 SESD-IE--ELPGELKAL------VNLKCLDLEYTGNLITIPR--QLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGG 326 (558)
Q Consensus 258 ~~~~-l~--~lp~~i~~l------~~L~~L~l~~~~~l~~lp~--~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 326 (558)
++|. ++ .+|..++.+ ++|++|++++| .+..+|. . ++++++|++|++.++...
T Consensus 281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~-l~~l~~L~~L~L~~N~l~--------------- 343 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETS-LQKMKKLGMLECLYNQLE--------------- 343 (636)
T ss_dssp TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHH-HTTCTTCCEEECCSCCCE---------------
T ss_pred cCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhh-hccCCCCCEEeCcCCcCc---------------
Confidence 9997 88 489888887 99999999998 5668887 5 899999999999887653
Q ss_pred chhHHHhccCCCcceEEEEEccchhHHHHhcccccccc-ccceeeeeccCCCcccccchhh--hhhhhhhhhccccccce
Q 044595 327 EFIVEELLGLKSLEVISFTLRSSHGLQMILSSDQLRSC-TRALSFQCFNDSTSLEVSALAD--LKQLKMLRIARSEILEE 403 (558)
Q Consensus 327 ~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~l~~--l~~L~~L~l~~~~~l~~ 403 (558)
+..+ .++.+++|+.|++..+....++.... .... |+.|+++++.-. .++- .+.. +++|+.|+++++.....
T Consensus 344 g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~---~l~~~L~~L~Ls~N~l~-~lp~-~~~~~~l~~L~~L~Ls~N~l~~~ 417 (636)
T 4eco_A 344 GKLP-AFGSEIKLASLNLAYNQITEIPANFC---GFTEQVENLSFAHNKLK-YIPN-IFDAKSVSVMSAIDFSYNEIGSV 417 (636)
T ss_dssp EECC-CCEEEEEESEEECCSSEEEECCTTSE---EECTTCCEEECCSSCCS-SCCS-CCCTTCSSCEEEEECCSSCTTTT
T ss_pred cchh-hhCCCCCCCEEECCCCccccccHhhh---hhcccCcEEEccCCcCc-ccch-hhhhcccCccCEEECcCCcCCCc
Confidence 1233 67788899999998777664443322 2225 889999876533 3331 2333 34788888888744332
Q ss_pred eEeccCC-cccccccccccEEEEcCCCCCCCchh--hhccCCCceEEEecCch
Q 044595 404 LKMDCAG-EVRQFVFHSLNKVEIYGCSKLKDLTF--LVFAPNLKSIKVTGSHA 453 (558)
Q Consensus 404 l~~~~~~-~~~~~~~~~L~~L~L~~~~~l~~l~~--l~~l~~L~~L~l~~c~~ 453 (558)
.+..+.. ......+++|+.|+++++ .++.++. +..+++|+.|++++|..
T Consensus 418 ~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N~l 469 (636)
T 4eco_A 418 DGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNML 469 (636)
T ss_dssp TTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSSCC
T ss_pred chhhhcccccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCCCC
Confidence 2222220 000012457888888887 5556543 34577888888877754
No 23
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=3.6e-22 Score=213.41 Aligned_cols=294 Identities=15% Similarity=0.189 Sum_probs=193.8
Q ss_pred CCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccC-cccCCCCCCCeEeccCCCCCCcchh-hhcCCCCcEE
Q 044595 201 TCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLP-LGISKLVSLQHLDLSESDIEELPGE-LKALVNLKCL 278 (558)
Q Consensus 201 ~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L 278 (558)
.+.+++.+++.++.+..+|+.++..+++|++|++++|.++.+| ..++.+++|++|++++|.+..+|.. ++.+++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 4678999999999999999999999999999999999999875 4899999999999999999988765 6999999999
Q ss_pred eccCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhccCCCcceEEEEEccchhHHHHhcc
Q 044595 279 DLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGLKSLEVISFTLRSSHGLQMILSS 358 (558)
Q Consensus 279 ~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~ 358 (558)
++++| .+..+|..+++++++|++|++.++.... ..+..++.+++|+.|++..+......
T Consensus 129 ~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~---------------~~~~~~~~l~~L~~L~L~~N~l~~~~----- 187 (597)
T 3oja_B 129 VLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLER---------------IEDDTFQATTSLQNLQLSSNRLTHVD----- 187 (597)
T ss_dssp ECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCB---------------CCTTTTTTCTTCCEEECTTSCCSBCC-----
T ss_pred EeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCC---------------CChhhhhcCCcCcEEECcCCCCCCcC-----
Confidence 99998 7889998877999999999999886643 23345677888888888776655432
Q ss_pred ccccccccceeeeeccCCCcccccchhhhhhhhhhhhccccccceeEeccCCcccccccccccEEEEcCCCCCCCchhhh
Q 044595 359 DQLRSCTRALSFQCFNDSTSLEVSALADLKQLKMLRIARSEILEELKMDCAGEVRQFVFHSLNKVEIYGCSKLKDLTFLV 438 (558)
Q Consensus 359 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~l~ 438 (558)
......|+.|+++++.- . .++..++|+.|+++++ .+..++... +++|+.|++++| .++.+++++
T Consensus 188 ~~~l~~L~~L~l~~n~l-~-----~l~~~~~L~~L~ls~n-~l~~~~~~~--------~~~L~~L~L~~n-~l~~~~~l~ 251 (597)
T 3oja_B 188 LSLIPSLFHANVSYNLL-S-----TLAIPIAVEELDASHN-SINVVRGPV--------NVELTILKLQHN-NLTDTAWLL 251 (597)
T ss_dssp GGGCTTCSEEECCSSCC-S-----EEECCTTCSEEECCSS-CCCEEECSC--------CSCCCEEECCSS-CCCCCGGGG
T ss_pred hhhhhhhhhhhcccCcc-c-----cccCCchhheeeccCC-ccccccccc--------CCCCCEEECCCC-CCCCChhhc
Confidence 11123566666654321 1 2233455666666655 333333221 244555555555 444444455
Q ss_pred ccCCCceEEEecCchhHHHhh-cCccC----------CcccccccCCCCcccceeeccCcccccccccCCCCCCCcceEe
Q 044595 439 FAPNLKSIKVTGSHAMEAIIS-VGKFA----------EVPEVMANLNPFAKLQNLEVIGAINLKSIYWKPLRFPHLKTMS 507 (558)
Q Consensus 439 ~l~~L~~L~l~~c~~l~~~~~-~~~~~----------~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~l~~L~~L~ 507 (558)
.+++|+.|++++|..-...+. ...+. .+..++.....+|+|++|+++++ .+..+|.....+++|++|+
T Consensus 252 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~ 330 (597)
T 3oja_B 252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLY 330 (597)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEE
T ss_pred cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCC-CCCccCcccccCCCCCEEE
Confidence 555555555554432111110 00000 00123334456778888888775 4556665556678888888
Q ss_pred eecCCCCcCCCCCCCcccccceeEecc
Q 044595 508 FFHCNKLKMLPLDSNSAREHSIVIRGD 534 (558)
Q Consensus 508 i~~C~~L~~lP~~~~~~~~~~~~i~~~ 534 (558)
+++| .+..+|.... ..+..+.+.++
T Consensus 331 L~~N-~l~~~~~~~~-~~L~~L~l~~N 355 (597)
T 3oja_B 331 LDHN-SIVTLKLSTH-HTLKNLTLSHN 355 (597)
T ss_dssp CCSS-CCCCCCCCTT-CCCSEEECCSS
T ss_pred CCCC-CCCCcChhhc-CCCCEEEeeCC
Confidence 8876 4666664332 33444555443
No 24
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.87 E-value=2e-22 Score=221.72 Aligned_cols=130 Identities=23% Similarity=0.276 Sum_probs=75.7
Q ss_pred CCCcccceEEEeecccccc-cCCCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcc-cCcccCCCCCCCe
Q 044595 177 VTGWEKARRLSLMHNQITN-LSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTS-LPLGISKLVSLQH 254 (558)
Q Consensus 177 ~~~~~~lr~L~l~~~~~~~-l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~i~~L~~L~~ 254 (558)
...++++++|++++|.+.. ++.+..+++|++|++++|.+....+..+..+++|++|++++|.++. +|. . .+++|++
T Consensus 196 ~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~-~l~~L~~ 273 (768)
T 3rgz_A 196 VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP-L-PLKSLQY 273 (768)
T ss_dssp CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCC-C-CCTTCCE
T ss_pred cccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCc-c-ccCCCCE
Confidence 3556677777777776655 3446667777777777777764444446667777777777766652 222 2 4555555
Q ss_pred EeccCCCCC-CcchhhhcC-CCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccC
Q 044595 255 LDLSESDIE-ELPGELKAL-VNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAG 309 (558)
Q Consensus 255 L~l~~~~l~-~lp~~i~~l-~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 309 (558)
|++++|.+. .+|..+..+ ++|++|++++|.....+|.. ++++++|++|++.++.
T Consensus 274 L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~ 329 (768)
T 3rgz_A 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSNN 329 (768)
T ss_dssp EECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-GGGCTTCCEEECCSSE
T ss_pred EECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-HhcCCCccEEECCCCc
Confidence 555555544 555555443 56666666665333344443 5566666666665543
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.87 E-value=3.7e-21 Score=204.31 Aligned_cols=138 Identities=25% Similarity=0.350 Sum_probs=102.9
Q ss_pred ecCcccccCCCCCCcccceEEEeecccccccC--CCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccC
Q 044595 166 NAGVGLVEAPDVTGWEKARRLSLMHNQITNLS--EIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLP 243 (558)
Q Consensus 166 ~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~--~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp 243 (558)
..+.....++.. -.++++.|++++|.+..++ .+..+++|++|++++|.+..+++..|.++++|++|++++|.++.+|
T Consensus 38 ls~~~L~~ip~~-~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp 116 (562)
T 3a79_B 38 YSNRNLTHVPKD-LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNIS 116 (562)
T ss_dssp CTTSCCCSCCTT-SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEEC
T ss_pred cCCCCCccCCCC-CCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccC
Confidence 334444444431 2268888888888888875 4788888888888888888887766888888888888888888888
Q ss_pred cccCCCCCCCeEeccCCCCCCcc--hhhhcCCCCcEEeccCCCCCCcCchhhhcCCCCC--cEEEeeccCC
Q 044595 244 LGISKLVSLQHLDLSESDIEELP--GELKALVNLKCLDLEYTGNLITIPRQLISNLSRL--HVLRMFGAGH 310 (558)
Q Consensus 244 ~~i~~L~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L--~~L~l~~~~~ 310 (558)
.. .+++|++|++++|.+..+| ..++.+++|++|++++| .+.... +..+++| ++|++.++..
T Consensus 117 ~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n-~l~~~~---~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 117 CC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA-KFRQLD---LLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp SC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECS-BCCTTT---TGGGTTSCEEEEEEEESSC
T ss_pred cc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCC-ccccCc---hhhhhhceeeEEEeecccc
Confidence 76 7888888888888888654 67888888888888887 344322 4555555 8888887755
No 26
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.87 E-value=3.9e-22 Score=218.38 Aligned_cols=230 Identities=12% Similarity=0.153 Sum_probs=142.0
Q ss_pred CCCCCCceEEEeecCCccc------------------cCchh-hhCCCCCcEEEcCCCCCc-ccCcccCCCCCCCeEecc
Q 044595 199 IPTCPHLLTFFLNKNRFQM------------------IPNDF-FQFMPSLKVLNLSYSKLT-SLPLGISKLVSLQHLDLS 258 (558)
Q Consensus 199 ~~~~~~Lr~L~l~~~~~~~------------------~~~~~-~~~l~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~ 258 (558)
+..+++|++|++++|.+.. +|+.+ |.++++|++|++++|.+. .+|..++++++|++|+++
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls 523 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIA 523 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECT
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECc
Confidence 4566777777777777776 66663 337777788888777644 667777777778888887
Q ss_pred CCC-CCC--cchhhhcCC-------CCcEEeccCCCCCCcCch-hhhcCCCCCcEEEeeccCCCcccccccCCcccCCcc
Q 044595 259 ESD-IEE--LPGELKALV-------NLKCLDLEYTGNLITIPR-QLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGE 327 (558)
Q Consensus 259 ~~~-l~~--lp~~i~~l~-------~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 327 (558)
+|. ++. +|..++.+. +|++|++++| .+..+|. ..++++++|++|++.++....
T Consensus 524 ~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~--------------- 587 (876)
T 4ecn_A 524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHNKVRH--------------- 587 (876)
T ss_dssp TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHHHTTCTTCCEEECTTSCCCB---------------
T ss_pred CCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCccCChhhhhcCCCCCEEECCCCCccc---------------
Confidence 776 663 777666665 7778887777 4557776 127777788888777665431
Q ss_pred hhHHHhccCCCcceEEEEEccchhHHHHhcccccccc-ccceeeeeccCCCcccccchhhh--hhhhhhhhcccccccee
Q 044595 328 FIVEELLGLKSLEVISFTLRSSHGLQMILSSDQLRSC-TRALSFQCFNDSTSLEVSALADL--KQLKMLRIARSEILEEL 404 (558)
Q Consensus 328 ~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~l~~l 404 (558)
.+ .++.+++|+.|++..+....++.... ...+ |+.|+++++.-. .++ ..+..+ ++|+.|+++++.....
T Consensus 588 -lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~---~l~~~L~~L~Ls~N~L~-~lp-~~~~~~~~~~L~~L~Ls~N~l~g~- 659 (876)
T 4ecn_A 588 -LE-AFGTNVKLTDLKLDYNQIEEIPEDFC---AFTDQVEGLGFSHNKLK-YIP-NIFNAKSVYVMGSVDFSYNKIGSE- 659 (876)
T ss_dssp -CC-CCCTTSEESEEECCSSCCSCCCTTSC---EECTTCCEEECCSSCCC-SCC-SCCCTTCSSCEEEEECCSSCTTTT-
T ss_pred -ch-hhcCCCcceEEECcCCccccchHHHh---hccccCCEEECcCCCCC-cCc-hhhhccccCCCCEEECcCCcCCCc-
Confidence 22 56777888888887776654433221 1224 888888775532 332 123333 3477777777643221
Q ss_pred EeccCCcccccccccccEEEEcCCCCCCCchh-h-hccCCCceEEEecCch
Q 044595 405 KMDCAGEVRQFVFHSLNKVEIYGCSKLKDLTF-L-VFAPNLKSIKVTGSHA 453 (558)
Q Consensus 405 ~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~-l-~~l~~L~~L~l~~c~~ 453 (558)
.+...........++|+.|++++| .+..+|. + ..+++|+.|+|++|..
T Consensus 660 ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~~~~~~l~~L~~L~Ls~N~L 709 (876)
T 4ecn_A 660 GRNISCSMDDYKGINASTVTLSYN-EIQKFPTELFATGSPISTIILSNNLM 709 (876)
T ss_dssp SSSCSSCTTTCCCCCEEEEECCSS-CCCSCCHHHHHTTCCCSEEECCSCCC
T ss_pred cccchhhhccccCCCcCEEEccCC-cCCccCHHHHccCCCCCEEECCCCcC
Confidence 111111111112347777777777 5555543 2 3567777777777643
No 27
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=3.3e-21 Score=190.50 Aligned_cols=243 Identities=16% Similarity=0.214 Sum_probs=177.7
Q ss_pred ccceEEEeecccccccCCCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCccc-CcccCCCCCCCeEeccC
Q 044595 181 EKARRLSLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSL-PLGISKLVSLQHLDLSE 259 (558)
Q Consensus 181 ~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~ 259 (558)
.+++.++++++.+..+|.. -.+.+++|++++|.+..+++..+.++++|++|++++|.++.+ |..++++++|++|++++
T Consensus 31 c~l~~l~~~~~~l~~lp~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKD-LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp EETTEEECTTSCCCSCCCS-CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCCeEEEecCCCccccCcc-CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 4788899998888887652 237899999999999999987789999999999999999977 88899999999999999
Q ss_pred CCCCCcchhhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhccCCCc
Q 044595 260 SDIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGLKSL 339 (558)
Q Consensus 260 ~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L 339 (558)
|.++.+|..+. ++|++|++++| .+..++...++++++|++|++.++.... .......+..+++|
T Consensus 110 n~l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------------~~~~~~~~~~l~~L 173 (330)
T 1xku_A 110 NQLKELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKS-------------SGIENGAFQGMKKL 173 (330)
T ss_dssp SCCSBCCSSCC--TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCG-------------GGBCTTGGGGCTTC
T ss_pred CcCCccChhhc--ccccEEECCCC-cccccCHhHhcCCccccEEECCCCcCCc-------------cCcChhhccCCCCc
Confidence 99999987765 79999999998 6778887778999999999998876542 12234567788899
Q ss_pred ceEEEEEccchhHHHHhccccccccccceeeeeccCCCcccccchhhhhhhhhhhhccccccceeEeccCCccccccccc
Q 044595 340 EVISFTLRSSHGLQMILSSDQLRSCTRALSFQCFNDSTSLEVSALADLKQLKMLRIARSEILEELKMDCAGEVRQFVFHS 419 (558)
Q Consensus 340 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~ 419 (558)
+.|++..+....++... ...|+.|+++++. +.......+..+++|+.|+++++ .+..++..... .+++
T Consensus 174 ~~L~l~~n~l~~l~~~~-----~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~-----~l~~ 241 (330)
T 1xku_A 174 SYIRIADTNITTIPQGL-----PPSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLA-----NTPH 241 (330)
T ss_dssp CEEECCSSCCCSCCSSC-----CTTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSS-CCCEECTTTGG-----GSTT
T ss_pred CEEECCCCccccCCccc-----cccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCC-cCceeChhhcc-----CCCC
Confidence 99988776655433211 1356677766543 33333334566677777777666 34444432222 2567
Q ss_pred ccEEEEcCCCCCCCch-hhhccCCCceEEEecCch
Q 044595 420 LNKVEIYGCSKLKDLT-FLVFAPNLKSIKVTGSHA 453 (558)
Q Consensus 420 L~~L~L~~~~~l~~l~-~l~~l~~L~~L~l~~c~~ 453 (558)
|++|++++| .++.+| .+..+++|+.|++++|..
T Consensus 242 L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~i 275 (330)
T 1xku_A 242 LRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNNI 275 (330)
T ss_dssp CCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSCC
T ss_pred CCEEECCCC-cCccCChhhccCCCcCEEECCCCcC
Confidence 777777777 455543 466677777777776653
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.87 E-value=1.8e-21 Score=201.41 Aligned_cols=322 Identities=16% Similarity=0.187 Sum_probs=218.7
Q ss_pred CCCCCcccceEEEeeccccc-cc--CCCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcc-cCcc--cCC
Q 044595 175 PDVTGWEKARRLSLMHNQIT-NL--SEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTS-LPLG--ISK 248 (558)
Q Consensus 175 ~~~~~~~~lr~L~l~~~~~~-~l--~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~--i~~ 248 (558)
..+..++++++|++++|.+. .+ ..+..+++|++|++++|.+..+++..+.++++|++|++++|.++. +|.. ++.
T Consensus 48 ~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 127 (455)
T 3v47_A 48 TSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKP 127 (455)
T ss_dssp TTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTT
T ss_pred hHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccC
Confidence 45778899999999999875 33 347889999999999999998876668999999999999999985 4444 889
Q ss_pred CCCCCeEeccCCCCCCc-chh-hhcCCCCcEEeccCCCCCCcCchhhhcCC--CCCcEEEeeccCCCcccccccC-----
Q 044595 249 LVSLQHLDLSESDIEEL-PGE-LKALVNLKCLDLEYTGNLITIPRQLISNL--SRLHVLRMFGAGHNAFDEASKD----- 319 (558)
Q Consensus 249 L~~L~~L~l~~~~l~~l-p~~-i~~l~~L~~L~l~~~~~l~~lp~~~i~~l--~~L~~L~l~~~~~~~~~~~~~~----- 319 (558)
+++|++|++++|.+..+ |.. ++.+++|++|++++| .+..++...+..+ .+|+.|++.++...........
T Consensus 128 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~ 206 (455)
T 3v47_A 128 LTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN-KVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCG 206 (455)
T ss_dssp CTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTC-CBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHC
T ss_pred cccCCEEECCCCccCccCcccccCCCCcccEEeCCCC-cccccChhhhhccccccccccccccCcccccchhhccccccc
Confidence 99999999999999877 544 889999999999998 4554443334443 3344444443332221100000
Q ss_pred -----C-----cccC--CcchhHHHhc---cCCCcceEEEEEccchhH----------HHHhccccccccccceeeeecc
Q 044595 320 -----S-----SLFG--GGEFIVEELL---GLKSLEVISFTLRSSHGL----------QMILSSDQLRSCTRALSFQCFN 374 (558)
Q Consensus 320 -----~-----~~~~--~~~~~~~~L~---~l~~L~~L~l~~~~~~~~----------~~~~~~~~~~~~L~~L~l~~~~ 374 (558)
. .+.+ .....+..+. ...+|+.|.+..+..... ....-..-....++.++++++.
T Consensus 207 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 286 (455)
T 3v47_A 207 NPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK 286 (455)
T ss_dssp CTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSC
T ss_pred cccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcc
Confidence 0 0000 0222333333 337788887764422110 0000000011368888888754
Q ss_pred CCCcccccchhhhhhhhhhhhccccccceeEeccCCcccccccccccEEEEcCCCCCCCc--hhhhccCCCceEEEecCc
Q 044595 375 DSTSLEVSALADLKQLKMLRIARSEILEELKMDCAGEVRQFVFHSLNKVEIYGCSKLKDL--TFLVFAPNLKSIKVTGSH 452 (558)
Q Consensus 375 ~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l--~~l~~l~~L~~L~l~~c~ 452 (558)
-. ......+..+++|+.|+++++ .+..+++..... +++|++|++++| .+..+ ..++.+++|+.|++++|.
T Consensus 287 l~-~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~-----l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~ 358 (455)
T 3v47_A 287 IF-ALLKSVFSHFTDLEQLTLAQN-EINKIDDNAFWG-----LTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNH 358 (455)
T ss_dssp CC-EECTTTTTTCTTCCEEECTTS-CCCEECTTTTTT-----CTTCCEEECCSS-CCCEECGGGGTTCTTCCEEECCSSC
T ss_pred cc-ccchhhcccCCCCCEEECCCC-cccccChhHhcC-----cccCCEEECCCC-ccCCcChhHhcCcccCCEEECCCCc
Confidence 33 333345788999999999988 555555544432 899999999999 66665 347889999999999986
Q ss_pred hhHHHhhcCccCCcccccccCCCCcccceeeccCcccccccccCC-CCCCCcceEeeecCCCCcCCC
Q 044595 453 AMEAIISVGKFAEVPEVMANLNPFAKLQNLEVIGAINLKSIYWKP-LRFPHLKTMSFFHCNKLKMLP 518 (558)
Q Consensus 453 ~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~-~~l~~L~~L~i~~C~~L~~lP 518 (558)
.-. + .+..+..+++|++|+++++ +++.++... ..+++|++|++++++---..|
T Consensus 359 l~~-~-----------~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 359 IRA-L-----------GDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCE-E-----------CTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccc-c-----------ChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 521 1 1246778999999999995 677777643 678999999999876544445
No 29
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.87 E-value=1.6e-20 Score=208.61 Aligned_cols=147 Identities=21% Similarity=0.270 Sum_probs=121.4
Q ss_pred eEEEecCcccccCCCCCCcccceEEEeecccccccC--CCCCCCCceEEEeecC-CccccCchhhhCCCCCcEEEcCCCC
Q 044595 162 NFFVNAGVGLVEAPDVTGWEKARRLSLMHNQITNLS--EIPTCPHLLTFFLNKN-RFQMIPNDFFQFMPSLKVLNLSYSK 238 (558)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~--~~~~~~~Lr~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~~~ 238 (558)
..+.........++. ..+++++|++++|.+..+. .+..+++|++|++++| ....+++..|.++++|++|++++|.
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc
Confidence 344455556666776 4589999999999998863 5889999999999988 4557766668999999999999999
Q ss_pred Cccc-CcccCCCCCCCeEeccCCCCCC-cchh--hhcCCCCcEEeccCCCCCCcC-chhhhcCCCCCcEEEeeccCCC
Q 044595 239 LTSL-PLGISKLVSLQHLDLSESDIEE-LPGE--LKALVNLKCLDLEYTGNLITI-PRQLISNLSRLHVLRMFGAGHN 311 (558)
Q Consensus 239 l~~l-p~~i~~L~~L~~L~l~~~~l~~-lp~~--i~~l~~L~~L~l~~~~~l~~l-p~~~i~~l~~L~~L~l~~~~~~ 311 (558)
++.+ |..++++++|++|++++|.+.. +|.. ++.+++|++|++++|. +..+ +...++++++|++|++.++...
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCC
Confidence 9976 8899999999999999999885 5655 8999999999999984 4444 4344899999999999987654
No 30
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.86 E-value=3e-22 Score=220.31 Aligned_cols=306 Identities=18% Similarity=0.151 Sum_probs=199.9
Q ss_pred CCCCCCcccceEEEeeccccccc--CCCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCc-ccCcccCCC-
Q 044595 174 APDVTGWEKARRLSLMHNQITNL--SEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLT-SLPLGISKL- 249 (558)
Q Consensus 174 ~~~~~~~~~lr~L~l~~~~~~~l--~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~lp~~i~~L- 249 (558)
.+.+..++++++|++++|.+... ..+..+++|++|++++|.+....+. . .+++|++|++++|.++ .+|..++.+
T Consensus 216 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~-~l~~L~~L~L~~n~l~~~ip~~~~~~~ 293 (768)
T 3rgz_A 216 IPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP-L-PLKSLQYLSLAENKFTGEIPDFLSGAC 293 (768)
T ss_dssp CCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCC-C-CCTTCCEEECCSSEEEESCCCCSCTTC
T ss_pred CcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCc-c-ccCCCCEEECcCCccCCccCHHHHhhc
Confidence 34477789999999999998753 3478899999999999988755443 2 7899999999999888 788888775
Q ss_pred CCCCeEeccCCCCC-CcchhhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcch
Q 044595 250 VSLQHLDLSESDIE-ELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEF 328 (558)
Q Consensus 250 ~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 328 (558)
++|++|++++|.+. .+|..++.+++|++|++++|.....+|...++++++|++|++.++.... .
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~---------------~ 358 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG---------------E 358 (768)
T ss_dssp TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEE---------------C
T ss_pred CcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCc---------------c
Confidence 99999999999887 7788899999999999999854447887778899999999998875431 1
Q ss_pred hHHHhcc---------------------------CCCcceEEEEEccchh-HHHHhccccccccccceeeeeccCCCccc
Q 044595 329 IVEELLG---------------------------LKSLEVISFTLRSSHG-LQMILSSDQLRSCTRALSFQCFNDSTSLE 380 (558)
Q Consensus 329 ~~~~L~~---------------------------l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 380 (558)
.+..+.. +++|+.|++..+...+ .+... ....+|+.|+++++.-....+
T Consensus 359 ~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l---~~l~~L~~L~Ls~N~l~~~~p 435 (768)
T 3rgz_A 359 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL---SNCSELVSLHLSFNYLSGTIP 435 (768)
T ss_dssp CCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGG---GGCTTCCEEECCSSEEESCCC
T ss_pred ccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHH---hcCCCCCEEECcCCcccCccc
Confidence 2222333 3344444444333221 11111 111245555555433221111
Q ss_pred ccchhhhhhhhhhhhccccccceeEeccCCcccccccccccEEEEcCCCCCC-Cc-hhhhccCCCceEEEecCchhHHHh
Q 044595 381 VSALADLKQLKMLRIARSEILEELKMDCAGEVRQFVFHSLNKVEIYGCSKLK-DL-TFLVFAPNLKSIKVTGSHAMEAII 458 (558)
Q Consensus 381 ~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~-~l-~~l~~l~~L~~L~l~~c~~l~~~~ 458 (558)
..+..+++|+.|+++++.....++..+. .+++|+.|++++| .+. .+ ..++.+++|+.|++++|.....
T Consensus 436 -~~l~~l~~L~~L~L~~n~l~~~~p~~~~------~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-- 505 (768)
T 3rgz_A 436 -SSLGSLSKLRDLKLWLNMLEGEIPQELM------YVKTLETLILDFN-DLTGEIPSGLSNCTNLNWISLSNNRLTGE-- 505 (768)
T ss_dssp -GGGGGCTTCCEEECCSSCCCSCCCGGGG------GCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECCSSCCCSC--
T ss_pred -HHHhcCCCCCEEECCCCcccCcCCHHHc------CCCCceEEEecCC-cccCcCCHHHhcCCCCCEEEccCCccCCc--
Confidence 2345556666666665533323332222 2566777777766 333 22 3466677777777776654222
Q ss_pred hcCccCCcccccccCCCCcccceeeccCcccccccccCCCCCCCcceEeeecCCCCcCCCC
Q 044595 459 SVGKFAEVPEVMANLNPFAKLQNLEVIGAINLKSIYWKPLRFPHLKTMSFFHCNKLKMLPL 519 (558)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~l~~L~~L~i~~C~~L~~lP~ 519 (558)
++..++.+++|++|++++|.-...+|.....+++|++|++++|+--..+|.
T Consensus 506 ----------~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 506 ----------IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556 (768)
T ss_dssp ----------CCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCG
T ss_pred ----------CChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCCh
Confidence 223456677888888887765556676667778888888877755556664
No 31
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.86 E-value=4.5e-21 Score=203.30 Aligned_cols=133 Identities=18% Similarity=0.251 Sum_probs=107.3
Q ss_pred CCCCCcccceEEEeecccccccC--CCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcc--cCcccCCCC
Q 044595 175 PDVTGWEKARRLSLMHNQITNLS--EIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTS--LPLGISKLV 250 (558)
Q Consensus 175 ~~~~~~~~lr~L~l~~~~~~~l~--~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~--lp~~i~~L~ 250 (558)
..+..++++++|++++|.+..++ .+..+++|++|++++|.+..+++..+.++++|++|++++|.++. .|..+++++
T Consensus 44 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~ 123 (549)
T 2z81_A 44 GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT 123 (549)
T ss_dssp STTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCT
T ss_pred hhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccC
Confidence 35778899999999999998875 47889999999999999999998888999999999999999984 467899999
Q ss_pred CCCeEeccCCC-CCCcc-hhhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeecc
Q 044595 251 SLQHLDLSESD-IEELP-GELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGA 308 (558)
Q Consensus 251 ~L~~L~l~~~~-l~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~ 308 (558)
+|++|++++|. +..+| ..++.+++|++|++++|......|.. ++++++|++|++.++
T Consensus 124 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSIRDIHHLTLHLS 182 (549)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEEEEEEEECS
T ss_pred CccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhccccCceEecccC
Confidence 99999999996 67776 46888999999999888433334443 555555555555443
No 32
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=1e-21 Score=193.40 Aligned_cols=105 Identities=20% Similarity=0.351 Sum_probs=82.8
Q ss_pred CCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcccCCCCCCCeEeccCCCCCCcchhhhcCCCCcEEecc
Q 044595 202 CPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHLDLSESDIEELPGELKALVNLKCLDLE 281 (558)
Q Consensus 202 ~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 281 (558)
.++++.|+++++.+..+|.. +.++++|++|++++|.++.+|..++++++|++|++++|.+..+|..++.+++|++|+++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQ-AFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp STTCCEEEEESSCCSSCCSC-GGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred ccceeEEEccCCCchhcChh-hhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 45678888888888888877 55588899999988888888888888889999999888888888888888889999998
Q ss_pred CCCCCCcCchhhhcC---------CCCCcEEEeecc
Q 044595 282 YTGNLITIPRQLISN---------LSRLHVLRMFGA 308 (558)
Q Consensus 282 ~~~~l~~lp~~~i~~---------l~~L~~L~l~~~ 308 (558)
+|.....+|.. ++. +++|++|++.++
T Consensus 159 ~n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n 193 (328)
T 4fcg_A 159 ACPELTELPEP-LASTDASGEHQGLVNLQSLRLEWT 193 (328)
T ss_dssp EETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEE
T ss_pred CCCCccccChh-HhhccchhhhccCCCCCEEECcCC
Confidence 88777777765 332 555555555544
No 33
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.86 E-value=2.6e-21 Score=206.19 Aligned_cols=146 Identities=24% Similarity=0.304 Sum_probs=122.7
Q ss_pred EEecCcccccCCCCCCcccceEEEeecccccccC--CCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcc
Q 044595 164 FVNAGVGLVEAPDVTGWEKARRLSLMHNQITNLS--EIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTS 241 (558)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~--~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~ 241 (558)
+.+.+.+...++. .-.+.+++|++++|.+..++ .+..+++|++|++++|.+..+++..|.++++|++|++++|.++.
T Consensus 12 ~~c~~~~l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~ 90 (570)
T 2z63_A 12 YQCMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90 (570)
T ss_dssp EECCSSCCSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred EEeCCCCccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCc
Confidence 3334444555543 22367999999999998875 57899999999999999999988889999999999999999997
Q ss_pred cC-cccCCCCCCCeEeccCCCCCCcch-hhhcCCCCcEEeccCCCCCCc--CchhhhcCCCCCcEEEeeccCCCc
Q 044595 242 LP-LGISKLVSLQHLDLSESDIEELPG-ELKALVNLKCLDLEYTGNLIT--IPRQLISNLSRLHVLRMFGAGHNA 312 (558)
Q Consensus 242 lp-~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~--lp~~~i~~l~~L~~L~l~~~~~~~ 312 (558)
+| ..++++++|++|++++|.++.+|. .++.+++|++|++++| .+.. +|.. ++++++|++|++.++....
T Consensus 91 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~-~~~l~~L~~L~l~~n~l~~ 163 (570)
T 2z63_A 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNKIQS 163 (570)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECTTSCCCE
T ss_pred cCHhhhcCccccccccccccccccCCCccccccccccEEecCCC-ccceecChhh-hcccCCCCEEeCcCCccce
Confidence 75 689999999999999999998876 5899999999999998 4444 6776 8999999999999886543
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.86 E-value=3.7e-21 Score=198.02 Aligned_cols=268 Identities=16% Similarity=0.180 Sum_probs=203.5
Q ss_pred CCCCcccceEEEeecccccccCCCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcccCCCCCCCeE
Q 044595 176 DVTGWEKARRLSLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHL 255 (558)
Q Consensus 176 ~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L 255 (558)
.+..++++++|+++++.+..++.+..+++|++|++++|.+..++ +..+++|++|++++|.++.+| ++++++|++|
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L 111 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYL 111 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEE
T ss_pred ChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee--cCCCCcCCEE
Confidence 34556899999999999999988889999999999999999886 788999999999999999885 8899999999
Q ss_pred eccCCCCCCcchhhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhcc
Q 044595 256 DLSESDIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLG 335 (558)
Q Consensus 256 ~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 335 (558)
++++|.++.+| ++.+++|++|++++| .+..++ ++++++|++|++.++.... . . .++.
T Consensus 112 ~L~~N~l~~l~--~~~l~~L~~L~l~~N-~l~~l~---l~~l~~L~~L~l~~n~~~~--------------~-~--~~~~ 168 (457)
T 3bz5_A 112 NCDTNKLTKLD--VSQNPLLTYLNCARN-TLTEID---VSHNTQLTELDCHLNKKIT--------------K-L--DVTP 168 (457)
T ss_dssp ECCSSCCSCCC--CTTCTTCCEEECTTS-CCSCCC---CTTCTTCCEEECTTCSCCC--------------C-C--CCTT
T ss_pred ECCCCcCCeec--CCCCCcCCEEECCCC-ccceec---cccCCcCCEEECCCCCccc--------------c-c--cccc
Confidence 99999999886 889999999999998 677775 7899999999998875431 1 1 3677
Q ss_pred CCCcceEEEEEccchhHHHHhccccccccccceeeeeccCCCcccccchhhhhhhhhhhhccccccceeEeccCCccccc
Q 044595 336 LKSLEVISFTLRSSHGLQMILSSDQLRSCTRALSFQCFNDSTSLEVSALADLKQLKMLRIARSEILEELKMDCAGEVRQF 415 (558)
Q Consensus 336 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~ 415 (558)
+++|+.|++..+....++ ......|+.|+++++.- ...+ +..+++|+.|+++++ .+..++ ..
T Consensus 169 l~~L~~L~ls~n~l~~l~-----l~~l~~L~~L~l~~N~l-~~~~---l~~l~~L~~L~Ls~N-~l~~ip--~~------ 230 (457)
T 3bz5_A 169 QTQLTTLDCSFNKITELD-----VSQNKLLNRLNCDTNNI-TKLD---LNQNIQLTFLDCSSN-KLTEID--VT------ 230 (457)
T ss_dssp CTTCCEEECCSSCCCCCC-----CTTCTTCCEEECCSSCC-SCCC---CTTCTTCSEEECCSS-CCSCCC--CT------
T ss_pred CCcCCEEECCCCccceec-----cccCCCCCEEECcCCcC-Ceec---cccCCCCCEEECcCC-cccccC--cc------
Confidence 899999999888776653 12223788888877543 3332 677899999999988 455554 22
Q ss_pred ccccccEEEEcCCCCCCCchhhhccCCCceEEEecCchhHHHhhcCccCCcccccccCCCCcccceeeccCccccccccc
Q 044595 416 VFHSLNKVEIYGCSKLKDLTFLVFAPNLKSIKVTGSHAMEAIISVGKFAEVPEVMANLNPFAKLQNLEVIGAINLKSIYW 495 (558)
Q Consensus 416 ~~~~L~~L~L~~~~~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~ 495 (558)
.+++|+.|+++++ .++.++ .+.+++|+.|+++++.. +.+ ..........+ ..+.+++|++|++++|..+..++.
T Consensus 231 ~l~~L~~L~l~~N-~l~~~~-~~~l~~L~~L~l~~n~L-~~L-~l~~n~~~~~~--~~~~l~~L~~L~Ls~n~~l~~l~~ 304 (457)
T 3bz5_A 231 PLTQLTYFDCSVN-PLTELD-VSTLSKLTTLHCIQTDL-LEI-DLTHNTQLIYF--QAEGCRKIKELDVTHNTQLYLLDC 304 (457)
T ss_dssp TCTTCSEEECCSS-CCSCCC-CTTCTTCCEEECTTCCC-SCC-CCTTCTTCCEE--ECTTCTTCCCCCCTTCTTCCEEEC
T ss_pred ccCCCCEEEeeCC-cCCCcC-HHHCCCCCEEeccCCCC-CEE-ECCCCccCCcc--cccccccCCEEECCCCcccceecc
Confidence 3889999999999 677665 55677776666554432 111 00000001112 246789999999999988777764
No 35
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.86 E-value=6.1e-21 Score=200.84 Aligned_cols=127 Identities=12% Similarity=0.182 Sum_probs=75.8
Q ss_pred hhhhhhhhhhhccccccceeEeccCCcccccccccccEEEEcCCCCCCCch----hhhccCCCceEEEecCchhHHHhhc
Q 044595 385 ADLKQLKMLRIARSEILEELKMDCAGEVRQFVFHSLNKVEIYGCSKLKDLT----FLVFAPNLKSIKVTGSHAMEAIISV 460 (558)
Q Consensus 385 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~----~l~~l~~L~~L~l~~c~~l~~~~~~ 460 (558)
..+++|++|+++++.....++..+. .+++|++|++++| .++.++ .++.+++|+.|++++|.....++..
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~------~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~ 393 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCG------HLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG 393 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCC------CCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC
T ss_pred hhCCcccEEEeECCccChhhhhhhc------cCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCcCCcccccc
Confidence 4566777777776633222222221 2667777777776 455432 2556677777777766543323321
Q ss_pred --CccCCcccccccC--------CCC-cccceeeccCcccccccccCCCCCCCcceEeeecCCCCcCCCCC
Q 044595 461 --GKFAEVPEVMANL--------NPF-AKLQNLEVIGAINLKSIYWKPLRFPHLKTMSFFHCNKLKMLPLD 520 (558)
Q Consensus 461 --~~~~~~~~~~~~~--------~~~-~~L~~L~l~~c~~L~~~~~~~~~l~~L~~L~i~~C~~L~~lP~~ 520 (558)
..+..+..+..+- ..+ ++|++|+++++ ++..+|.....+++|++|++++| +++.+|..
T Consensus 394 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~ 462 (520)
T 2z7x_B 394 DCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPDG 462 (520)
T ss_dssp SCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTT
T ss_pred hhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCHH
Confidence 1111111111000 112 68999999886 67788877778999999999998 78899976
No 36
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.86 E-value=1.6e-20 Score=204.29 Aligned_cols=275 Identities=20% Similarity=0.163 Sum_probs=169.4
Q ss_pred ecCcccccCCCCCCcccceEEEeecccccccCC--CCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccC
Q 044595 166 NAGVGLVEAPDVTGWEKARRLSLMHNQITNLSE--IPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLP 243 (558)
Q Consensus 166 ~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp 243 (558)
..+.....++..- .+++++|++++|.+..++. +..+++|++|++++|.+..+++..+.++++|++|++++|.++.+|
T Consensus 11 cs~~~L~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~ 89 (680)
T 1ziw_A 11 CSHLKLTQVPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 89 (680)
T ss_dssp CCSSCCSSCCSCS-CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCC
T ss_pred CCCCCcccccccc-CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccC
Confidence 3333444444321 2789999999999988764 788999999999999999988888899999999999999999887
Q ss_pred c-ccCCCCCCCeEeccCCCCCCcc-hhhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCCccccccc---
Q 044595 244 L-GISKLVSLQHLDLSESDIEELP-GELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASK--- 318 (558)
Q Consensus 244 ~-~i~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~--- 318 (558)
. .++++++|++|++++|.+..+| ..++.+++|++|++++| .+...+...++++++|++|++.++..........
T Consensus 90 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 168 (680)
T 1ziw_A 90 DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIF 168 (680)
T ss_dssp TTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSS-CCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGG
T ss_pred hhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCC-cccccCchhhcccccCCEEEccCCcccccCHHHhhcc
Confidence 6 5899999999999999998886 56899999999999998 4555554447899999999998876543211000
Q ss_pred ----CC--cccC--CcchhHHHhccCCCcceEEEEEccchh--HHHHhccccccccccceeeeeccCCCcccccchhhhh
Q 044595 319 ----DS--SLFG--GGEFIVEELLGLKSLEVISFTLRSSHG--LQMILSSDQLRSCTRALSFQCFNDSTSLEVSALADLK 388 (558)
Q Consensus 319 ----~~--~~~~--~~~~~~~~L~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~ 388 (558)
.. .+.+ ........+..+.+|+.+.+....... ...+.... ....++.|+++++.-. ......+..++
T Consensus 169 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l-~~~~L~~L~L~~n~l~-~~~~~~~~~l~ 246 (680)
T 1ziw_A 169 ANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL-ANTSIRNLSLSNSQLS-TTSNTTFLGLK 246 (680)
T ss_dssp TTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHH-TTSCCCEEECTTSCCC-EECTTTTGGGG
T ss_pred ccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHh-hhccccEEEccCCccc-ccChhHhhccC
Confidence 00 0000 011111222333333333332211110 00000000 0125666666554322 22222344444
Q ss_pred h--hhhhhhccccccceeEeccCCcccccccccccEEEEcCCCCCCCc--hhhhccCCCceEEEecC
Q 044595 389 Q--LKMLRIARSEILEELKMDCAGEVRQFVFHSLNKVEIYGCSKLKDL--TFLVFAPNLKSIKVTGS 451 (558)
Q Consensus 389 ~--L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l--~~l~~l~~L~~L~l~~c 451 (558)
. |+.|+++++ .+..+++..... +++|++|+++++ .+..+ ..++.+++|+.|+++++
T Consensus 247 ~~~L~~L~Ls~n-~l~~~~~~~~~~-----l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~~ 306 (680)
T 1ziw_A 247 WTNLTMLDLSYN-NLNVVGNDSFAW-----LPQLEYFFLEYN-NIQHLFSHSLHGLFNVRYLNLKRS 306 (680)
T ss_dssp GSCCCEEECTTS-CCCEECTTTTTT-----CTTCCEEECCSC-CBSEECTTTTTTCTTCCEEECTTC
T ss_pred cCCCCEEECCCC-CcCccCcccccC-----cccccEeeCCCC-ccCccChhhhcCCCCccEEeccch
Confidence 3 777777766 344444333332 667777777766 44432 24566666666666654
No 37
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=7.2e-21 Score=187.40 Aligned_cols=241 Identities=22% Similarity=0.276 Sum_probs=171.1
Q ss_pred CCCCCcEEEcCCCCCcccCcccCCCCCCCeEeccCCCCCCcchhhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEE
Q 044595 225 FMPSLKVLNLSYSKLTSLPLGISKLVSLQHLDLSESDIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLR 304 (558)
Q Consensus 225 ~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~ 304 (558)
...++++|+++++.++.+|..++++++|++|++++|.+..+|..++.+++|++|++++| .+..+|.. ++++++|++|+
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~-l~~l~~L~~L~ 156 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPAS-IASLNRLRELS 156 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGG-GGGCTTCCEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHH-HhcCcCCCEEE
Confidence 45889999999999999999999999999999999999999999999999999999998 66789987 89999999999
Q ss_pred eeccCCCcccccccCCcccCCcchhHHHhccCCCcceEEEEEccchhHHHHhccccccccccceeeeeccCCCcccccch
Q 044595 305 MFGAGHNAFDEASKDSSLFGGGEFIVEELLGLKSLEVISFTLRSSHGLQMILSSDQLRSCTRALSFQCFNDSTSLEVSAL 384 (558)
Q Consensus 305 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l 384 (558)
+.+|..... .+..+.. ..+ ...+
T Consensus 157 L~~n~~~~~---------------~p~~~~~--------------------------------~~~----------~~~~ 179 (328)
T 4fcg_A 157 IRACPELTE---------------LPEPLAS--------------------------------TDA----------SGEH 179 (328)
T ss_dssp EEEETTCCC---------------CCSCSEE--------------------------------EC-----------CCCE
T ss_pred CCCCCCccc---------------cChhHhh--------------------------------ccc----------hhhh
Confidence 998755321 1111110 000 0013
Q ss_pred hhhhhhhhhhhccccccceeEeccCCcccccccccccEEEEcCCCCCCCc-hhhhccCCCceEEEecCchhHHHhhcCcc
Q 044595 385 ADLKQLKMLRIARSEILEELKMDCAGEVRQFVFHSLNKVEIYGCSKLKDL-TFLVFAPNLKSIKVTGSHAMEAIISVGKF 463 (558)
Q Consensus 385 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l-~~l~~l~~L~~L~l~~c~~l~~~~~~~~~ 463 (558)
..+++|+.|+++++ .+..++..+. .+++|++|++++| .+..+ +.++.+++|+.|++++|.....++
T Consensus 180 ~~l~~L~~L~L~~n-~l~~lp~~l~------~l~~L~~L~L~~N-~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p----- 246 (328)
T 4fcg_A 180 QGLVNLQSLRLEWT-GIRSLPASIA------NLQNLKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALRNYP----- 246 (328)
T ss_dssp EESTTCCEEEEEEE-CCCCCCGGGG------GCTTCCEEEEESS-CCCCCCGGGGGCTTCCEEECTTCTTCCBCC-----
T ss_pred ccCCCCCEEECcCC-CcCcchHhhc------CCCCCCEEEccCC-CCCcCchhhccCCCCCEEECcCCcchhhhH-----
Confidence 44556666666665 3334433322 2677888888877 45554 457778888888888877644332
Q ss_pred CCcccccccCCCCcccceeeccCcccccccccCCCCCCCcceEeeecCCCCcCCCCCCCcccccceeEecchhccccccc
Q 044595 464 AEVPEVMANLNPFAKLQNLEVIGAINLKSIYWKPLRFPHLKTMSFFHCNKLKMLPLDSNSAREHSIVIRGDRMWWAQLQW 543 (558)
Q Consensus 464 ~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~l~~L~~L~i~~C~~L~~lP~~~~~~~~~~~~i~~~~~~~~~~~~ 543 (558)
..+..+++|++|++++|..+..+|.....+++|++|++++|+.+..+|..... ..++..+.....+...+.+
T Consensus 247 -------~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~-L~~L~~l~l~~~~~~~l~~ 318 (328)
T 4fcg_A 247 -------PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ-LPANCIILVPPHLQAQLDQ 318 (328)
T ss_dssp -------CCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGG-SCTTCEEECCGGGSCC---
T ss_pred -------HHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhh-ccCceEEeCCHHHHHHHhh
Confidence 35677888888888888888888877778888888888888888888865433 2456666665666655555
Q ss_pred Cc
Q 044595 544 ED 545 (558)
Q Consensus 544 ~~ 545 (558)
..
T Consensus 319 ~~ 320 (328)
T 4fcg_A 319 HR 320 (328)
T ss_dssp --
T ss_pred hh
Confidence 43
No 38
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.84 E-value=4.6e-20 Score=195.93 Aligned_cols=127 Identities=21% Similarity=0.304 Sum_probs=107.2
Q ss_pred ccceEEEeecccccccCCCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCccc-CcccCCCCCCCeEeccC
Q 044595 181 EKARRLSLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSL-PLGISKLVSLQHLDLSE 259 (558)
Q Consensus 181 ~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~ 259 (558)
...++++++++.++.+|.-. .+++++|++++|.+..+++..+.++++|++|++++|.++.+ |..++++++|++|++++
T Consensus 31 ~~~~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 31 ELESMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp --CCEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CCCcEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 34588999999999887522 38999999999999999887789999999999999999977 67799999999999999
Q ss_pred CCCCCcchhhhcCCCCcEEeccCCCCCCcCch-hhhcCCCCCcEEEeeccCCC
Q 044595 260 SDIEELPGELKALVNLKCLDLEYTGNLITIPR-QLISNLSRLHVLRMFGAGHN 311 (558)
Q Consensus 260 ~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~~ 311 (558)
|.++.+|.. .+++|++|++++| .+..+|. ..++++++|++|++.++...
T Consensus 110 N~l~~lp~~--~l~~L~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 110 NRLQNISCC--PMASLRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp SCCCEECSC--CCTTCSEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred CcCCccCcc--ccccCCEEECCCC-CccccCchHhhcccCcccEEecCCCccc
Confidence 999999977 8999999999998 5666542 33899999999999987654
No 39
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.84 E-value=2.3e-20 Score=186.19 Aligned_cols=270 Identities=21% Similarity=0.207 Sum_probs=180.7
Q ss_pred eEEEeecccccccCCCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCccc-CcccCCCCCCCeEeccCCCC
Q 044595 184 RRLSLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSL-PLGISKLVSLQHLDLSESDI 262 (558)
Q Consensus 184 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~l 262 (558)
...+.+++.++.+|. .-.++|++|++++|.+..++...+.++++|++|++++|.++.+ |..++++++|++|++++|.+
T Consensus 34 ~~c~~~~~~l~~iP~-~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 112 (353)
T 2z80_A 34 GICKGSSGSLNSIPS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112 (353)
T ss_dssp SEEECCSTTCSSCCT-TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred eEeeCCCCCcccccc-cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC
Confidence 345666777777764 2235889999999988888886688899999999999988876 45688889999999999988
Q ss_pred CCcchh-hhcCCCCcEEeccCCCCCCcCch-hhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhccCCCcc
Q 044595 263 EELPGE-LKALVNLKCLDLEYTGNLITIPR-QLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGLKSLE 340 (558)
Q Consensus 263 ~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~ 340 (558)
+.+|.. ++.+++|++|++++| .+..+|. ..++++++|++|++.++... .......++.+++|+
T Consensus 113 ~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~--------------~~~~~~~~~~l~~L~ 177 (353)
T 2z80_A 113 SNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTF--------------TKIQRKDFAGLTFLE 177 (353)
T ss_dssp SSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSC--------------CEECTTTTTTCCEEE
T ss_pred CcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccc--------------cccCHHHccCCCCCC
Confidence 888876 788899999999887 6677776 44788889999998877422 122234566777777
Q ss_pred eEEEEEccchhHHHHhccccccccccceeeeeccCCCcccccchhhhhhhhhhhhccccccceeEeccCCcccccccccc
Q 044595 341 VISFTLRSSHGLQMILSSDQLRSCTRALSFQCFNDSTSLEVSALADLKQLKMLRIARSEILEELKMDCAGEVRQFVFHSL 420 (558)
Q Consensus 341 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L 420 (558)
.|++..+..... ....+..+++|++|+++++. +..++..... .+++|
T Consensus 178 ~L~l~~n~l~~~---------------------------~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~-----~~~~L 224 (353)
T 2z80_A 178 ELEIDASDLQSY---------------------------EPKSLKSIQNVSHLILHMKQ-HILLLEIFVD-----VTSSV 224 (353)
T ss_dssp EEEEEETTCCEE---------------------------CTTTTTTCSEEEEEEEECSC-STTHHHHHHH-----HTTTE
T ss_pred EEECCCCCcCcc---------------------------CHHHHhccccCCeecCCCCc-cccchhhhhh-----hcccc
Confidence 777776543221 11124455666666666553 3333222211 25677
Q ss_pred cEEEEcCCCCCCCch-----hhhccCCCceEEEecCchhHHHhhcCccCCcccccccCCCCcccceeeccCccccccccc
Q 044595 421 NKVEIYGCSKLKDLT-----FLVFAPNLKSIKVTGSHAMEAIISVGKFAEVPEVMANLNPFAKLQNLEVIGAINLKSIYW 495 (558)
Q Consensus 421 ~~L~L~~~~~l~~l~-----~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~ 495 (558)
+.|+++++ .++.++ .....+.++.++++++..-.... ..++..+..+++|++|+++++ ++..++.
T Consensus 225 ~~L~L~~n-~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l--------~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~ 294 (353)
T 2z80_A 225 ECLELRDT-DLDTFHFSELSTGETNSLIKKFTFRNVKITDESL--------FQVMKLLNQISGLLELEFSRN-QLKSVPD 294 (353)
T ss_dssp EEEEEESC-BCTTCCCC------CCCCCCEEEEESCBCCHHHH--------HHHHHHHHTCTTCCEEECCSS-CCCCCCT
T ss_pred cEEECCCC-ccccccccccccccccchhhccccccccccCcch--------hhhHHHHhcccCCCEEECCCC-CCCccCH
Confidence 77777776 444422 23345667777777665422211 122334566788888888875 5677776
Q ss_pred CC-CCCCCcceEeeecCC
Q 044595 496 KP-LRFPHLKTMSFFHCN 512 (558)
Q Consensus 496 ~~-~~l~~L~~L~i~~C~ 512 (558)
.. ..+++|++|++++++
T Consensus 295 ~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 295 GIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp TTTTTCTTCCEEECCSSC
T ss_pred HHHhcCCCCCEEEeeCCC
Confidence 54 578888888888874
No 40
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.84 E-value=4.4e-20 Score=200.88 Aligned_cols=246 Identities=15% Similarity=0.199 Sum_probs=178.4
Q ss_pred eEEEeecccccccCCCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCccc-CcccCCCCCCCeEeccCCCC
Q 044595 184 RRLSLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSL-PLGISKLVSLQHLDLSESDI 262 (558)
Q Consensus 184 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~l 262 (558)
+.++.+++.++.+|..- .+++++|++++|.+..+++..+.++++|++|++++|.++.+ |..++++++|++|++++|.+
T Consensus 7 ~~~~cs~~~L~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 85 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85 (680)
T ss_dssp SEEECCSSCCSSCCSCS-CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC
T ss_pred CeeECCCCCcccccccc-CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc
Confidence 45777778888777521 27899999999999999988899999999999999999976 67789999999999999999
Q ss_pred CCcch-hhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhccCCCcce
Q 044595 263 EELPG-ELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGLKSLEV 341 (558)
Q Consensus 263 ~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~ 341 (558)
+.+|. .++.+++|++|++++| .+..+|+..++++++|++|++.++.... ..+..++.+++|+.
T Consensus 86 ~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~---------------~~~~~~~~l~~L~~ 149 (680)
T 1ziw_A 86 SQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSS---------------TKLGTQVQLENLQE 149 (680)
T ss_dssp CCCCTTTTTTCTTCSEEECCSS-CCCCCCSCTTTTCTTCCEEECCSSCCSC---------------CCCCSSSCCTTCCE
T ss_pred CccChhhhccCCCCCEEECCCC-ccCccChhHccccCCCCEEECCCCcccc---------------cCchhhcccccCCE
Confidence 99987 4999999999999998 6677876668999999999999886543 12334567889999
Q ss_pred EEEEEccchhHHHH-hccccccccccceeeeeccCCCcccccchhhh---------------------------hhhhhh
Q 044595 342 ISFTLRSSHGLQMI-LSSDQLRSCTRALSFQCFNDSTSLEVSALADL---------------------------KQLKML 393 (558)
Q Consensus 342 L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l---------------------------~~L~~L 393 (558)
|++..+........ .... ....|+.|+++++.- .......+..+ ++|+.|
T Consensus 150 L~L~~n~l~~~~~~~~~~~-~~~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L 227 (680)
T 1ziw_A 150 LLLSNNKIQALKSEELDIF-ANSSLKKLELSSNQI-KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNL 227 (680)
T ss_dssp EECCSSCCCCBCHHHHGGG-TTCEESEEECTTCCC-CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEE
T ss_pred EEccCCcccccCHHHhhcc-ccccccEEECCCCcc-cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEE
Confidence 98887665443221 1111 113678888876532 22221223333 455666
Q ss_pred hhccccccceeEeccCCcccccccccccEEEEcCCCCCCCc--hhhhccCCCceEEEecCch
Q 044595 394 RIARSEILEELKMDCAGEVRQFVFHSLNKVEIYGCSKLKDL--TFLVFAPNLKSIKVTGSHA 453 (558)
Q Consensus 394 ~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l--~~l~~l~~L~~L~l~~c~~ 453 (558)
+++++ .+....+..... ...++|+.|++++| .+..+ ..++.+++|+.|++++|..
T Consensus 228 ~L~~n-~l~~~~~~~~~~---l~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l 284 (680)
T 1ziw_A 228 SLSNS-QLSTTSNTTFLG---LKWTNLTMLDLSYN-NLNVVGNDSFAWLPQLEYFFLEYNNI 284 (680)
T ss_dssp ECTTS-CCCEECTTTTGG---GGGSCCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSCCB
T ss_pred EccCC-cccccChhHhhc---cCcCCCCEEECCCC-CcCccCcccccCcccccEeeCCCCcc
Confidence 66655 333333332221 11245999999999 56654 3578899999999999865
No 41
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.83 E-value=8e-20 Score=203.04 Aligned_cols=297 Identities=16% Similarity=0.176 Sum_probs=192.4
Q ss_pred eEEEeecccccccCCCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCC-CCccc-CcccCCCCCCCeEeccCCC
Q 044595 184 RRLSLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYS-KLTSL-PLGISKLVSLQHLDLSESD 261 (558)
Q Consensus 184 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~l-p~~i~~L~~L~~L~l~~~~ 261 (558)
+..+.+++.++.+|. ..+++++|++++|.+..+++..+.++++|++|++++| .+..+ |..++++++|++|++++|.
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc
Confidence 456677788888887 5689999999999999987777999999999999999 44466 7789999999999999999
Q ss_pred CCCc-chhhhcCCCCcEEeccCCCCCCcCch-hhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhccCCCc
Q 044595 262 IEEL-PGELKALVNLKCLDLEYTGNLITIPR-QLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGLKSL 339 (558)
Q Consensus 262 l~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L 339 (558)
+..+ |..++.+++|++|++++|.....+|. ..++++++|++|+++++..... .....++++++|
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~--------------~~~~~~~~L~~L 150 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL--------------YLHPSFGKLNSL 150 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCC--------------CCCGGGGTCSSC
T ss_pred CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccc--------------ccchhHhhCCCC
Confidence 9976 77899999999999999954433443 3478999999999999876431 122467889999
Q ss_pred ceEEEEEccchhH--HHHhccccccccccceeeeeccCCCcccccchhhhh------hhhhhhhcccc------------
Q 044595 340 EVISFTLRSSHGL--QMILSSDQLRSCTRALSFQCFNDSTSLEVSALADLK------QLKMLRIARSE------------ 399 (558)
Q Consensus 340 ~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~------~L~~L~l~~~~------------ 399 (558)
+.|++..+..... ..+.... ..+|+.|+++.+.-....+. .+..++ .|+.|+++++.
T Consensus 151 ~~L~Ls~N~i~~~~~~~l~~l~--~~~L~~L~L~~n~l~~~~~~-~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~ 227 (844)
T 3j0a_A 151 KSIDFSSNQIFLVCEHELEPLQ--GKTLSFFSLAANSLYSRVSV-DWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNA 227 (844)
T ss_dssp CEEEEESSCCCCCCSGGGHHHH--HCSSCCCEECCSBSCCCCCC-CCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGT
T ss_pred CEEECCCCcCCeeCHHHccccc--CCccceEECCCCcccccccc-chhhcCCccccCceeEEecCCCcCchhHHHHHHhh
Confidence 9999987764321 1111100 02455555554332221111 111111 14444444331
Q ss_pred -------------------------------------------------ccceeEeccCCcccccccccccEEEEcCCCC
Q 044595 400 -------------------------------------------------ILEELKMDCAGEVRQFVFHSLNKVEIYGCSK 430 (558)
Q Consensus 400 -------------------------------------------------~l~~l~~~~~~~~~~~~~~~L~~L~L~~~~~ 430 (558)
.+..+.+.... .+++|+.|+|+++ .
T Consensus 228 l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~L~~n-~ 301 (844)
T 3j0a_A 228 ISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE-----TLKDLKVLNLAYN-K 301 (844)
T ss_dssp SCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSS-----SCCCCCEEEEESC-C
T ss_pred cCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhh-----cCCCCCEEECCCC-c
Confidence 22222222221 2556666666665 3
Q ss_pred CCCc--hhhhccCCCceEEEecCchhHHHhhcCccCCcccccccCCCCcccceeeccCccccccccc-CCCCCCCcceEe
Q 044595 431 LKDL--TFLVFAPNLKSIKVTGSHAMEAIISVGKFAEVPEVMANLNPFAKLQNLEVIGAINLKSIYW-KPLRFPHLKTMS 507 (558)
Q Consensus 431 l~~l--~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~-~~~~l~~L~~L~ 507 (558)
+..+ ..++.+++|++|++++|..- . ..+..+..+++|++|+++++ .+..++. ....+++|++|+
T Consensus 302 i~~~~~~~~~~l~~L~~L~Ls~N~l~-~-----------~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~ 368 (844)
T 3j0a_A 302 INKIADEAFYGLDNLQVLNLSYNLLG-E-----------LYSSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLD 368 (844)
T ss_dssp CCEECTTTTTTCSSCCEEEEESCCCS-C-----------CCSCSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEE
T ss_pred CCCCChHHhcCCCCCCEEECCCCCCC-c-----------cCHHHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEE
Confidence 4432 23455666666666665431 1 11235567788888888775 4555553 244578888888
Q ss_pred eecCCCCcCCCC
Q 044595 508 FFHCNKLKMLPL 519 (558)
Q Consensus 508 i~~C~~L~~lP~ 519 (558)
+++| .++.+|.
T Consensus 369 Ls~N-~l~~i~~ 379 (844)
T 3j0a_A 369 LRDN-ALTTIHF 379 (844)
T ss_dssp EETC-CSCCCSS
T ss_pred CCCC-CCCcccC
Confidence 8876 5666664
No 42
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.83 E-value=1.1e-21 Score=206.62 Aligned_cols=141 Identities=14% Similarity=0.120 Sum_probs=112.4
Q ss_pred ccHHHHHHHHHHHcCCchhHHHHHHHHHcCCCChhhHHHHHHHHhccCCCCCCCccchhhhHHhcccCCCCcchhhhhc-
Q 044595 2 PDILQLAQAAARECDGLPLALITIGRAMACKKTPDEWIYDIEVLRTSSSQFPGLGNEVYPLLKFSYDRLPSDTIKSCLL- 80 (558)
Q Consensus 2 ~~l~~i~~~iv~~c~GlPLai~~ig~~L~~~~~~~~W~~~~~~l~~~~~~~~~~~~~i~~~L~~SY~~L~~~~lk~cfl- 80 (558)
+++++++++|+++|+|+||||+++|+.|+.+ + |+.+ +.+.+..+... ..++..+|++||++||.+ +|.||+
T Consensus 313 ~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~---w~~~-~~l~~~l~~~~--~~~i~~~l~~Sy~~L~~~-lk~~f~~ 384 (549)
T 2a5y_B 313 EKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T---FEKM-AQLNNKLESRG--LVGVECITPYSYKSLAMA-LQRCVEV 384 (549)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S---HHHH-HHHHHHHHHHC--SSTTCCCSSSSSSSHHHH-HHHHHHT
T ss_pred hhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h---HHHH-HHhHHHhhccc--HHHHHHHHhcccccccHH-HHHHHhc
Confidence 6789999999999999999999999999763 3 5443 34433322111 247899999999999995 999999
Q ss_pred ----------ccccCCCCCccCHHHHHHHHHHc--CccccCC-chhhHHhHHHHHHHHHHhcccccCC---CCceehhhH
Q 044595 81 ----------YCSLYPEDYCISKEKLIDCWIGE--GFLTERD-RIGEQKEGYHILGILLHACLLEEGG---DGEVKMHDV 144 (558)
Q Consensus 81 ----------~~~~fp~~~~i~~~~Li~~W~ae--g~i~~~~-~~~~~~~~~~~~~~L~~~~l~~~~~---~~~~~mhdl 144 (558)
|||+||+|+.|+ +++|+|+ ||+.... +...++.++ ||++|+++||++... ...|+|||+
T Consensus 385 Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdl 459 (549)
T 2a5y_B 385 LSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHI 459 (549)
T ss_dssp SCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEECSSSCEEECCHH
T ss_pred cchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCCCceEEEeChH
Confidence 999999999999 8999999 9998754 666778887 999999999999763 457999999
Q ss_pred HHHHHHHHHhh
Q 044595 145 IRDMAIWIACD 155 (558)
Q Consensus 145 ~~~~~~~~~~~ 155 (558)
+|++|++++.+
T Consensus 460 v~~~a~~~~~~ 470 (549)
T 2a5y_B 460 IHMFLKHVVDA 470 (549)
T ss_dssp HHHHHHTTSCT
T ss_pred HHHHHHHHHHH
Confidence 99999988765
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.83 E-value=9.1e-21 Score=185.53 Aligned_cols=127 Identities=19% Similarity=0.293 Sum_probs=85.8
Q ss_pred ccceEEEeecccccc---c-CCCCCCCCceEEEeec-CCccc-cCchhhhCCCCCcEEEcCCCCCc-ccCcccCCCCCCC
Q 044595 181 EKARRLSLMHNQITN---L-SEIPTCPHLLTFFLNK-NRFQM-IPNDFFQFMPSLKVLNLSYSKLT-SLPLGISKLVSLQ 253 (558)
Q Consensus 181 ~~lr~L~l~~~~~~~---l-~~~~~~~~Lr~L~l~~-~~~~~-~~~~~~~~l~~L~~L~l~~~~l~-~lp~~i~~L~~L~ 253 (558)
.+++.|+++++.+.. + +.+..+++|++|++++ |.+.. +|.. +.++++|++|++++|.++ .+|..++++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 467777777777664 3 3456677777777773 66653 4433 667777777777777776 6677777777777
Q ss_pred eEeccCCCCC-CcchhhhcCCCCcEEeccCCCCCCcCchhhhcCCC-CCcEEEeeccC
Q 044595 254 HLDLSESDIE-ELPGELKALVNLKCLDLEYTGNLITIPRQLISNLS-RLHVLRMFGAG 309 (558)
Q Consensus 254 ~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~-~L~~L~l~~~~ 309 (558)
+|++++|.+. .+|..++.+++|++|++++|.....+|.. +++++ +|++|++.++.
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~ 185 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNR 185 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSE
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCe
Confidence 7777777666 56777777777777777776433356655 66666 77777776654
No 44
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.82 E-value=7.3e-20 Score=182.54 Aligned_cols=158 Identities=24% Similarity=0.350 Sum_probs=137.9
Q ss_pred ccceEEEeecccccccCC--CCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcc-cCCCCCCCeEec
Q 044595 181 EKARRLSLMHNQITNLSE--IPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLG-ISKLVSLQHLDL 257 (558)
Q Consensus 181 ~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l 257 (558)
++++.|++++|.+..++. +..+++|++|++++|.+..+++..+.++++|++|++++|.++.+|.. ++++++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 689999999999998764 88999999999999999999887799999999999999999999876 899999999999
Q ss_pred cCCCCCCcch--hhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhcc
Q 044595 258 SESDIEELPG--ELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLG 335 (558)
Q Consensus 258 ~~~~l~~lp~--~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 335 (558)
++|.++.+|. .++.+++|++|++++|..+..++...++++++|++|++.++.... ..+..++.
T Consensus 132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~---------------~~~~~l~~ 196 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS---------------YEPKSLKS 196 (353)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE---------------ECTTTTTT
T ss_pred CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc---------------cCHHHHhc
Confidence 9999999987 688999999999999877788876668999999999999886532 23456778
Q ss_pred CCCcceEEEEEccchhHH
Q 044595 336 LKSLEVISFTLRSSHGLQ 353 (558)
Q Consensus 336 l~~L~~L~l~~~~~~~~~ 353 (558)
+++|+.|++..+.....+
T Consensus 197 l~~L~~L~l~~n~l~~~~ 214 (353)
T 2z80_A 197 IQNVSHLILHMKQHILLL 214 (353)
T ss_dssp CSEEEEEEEECSCSTTHH
T ss_pred cccCCeecCCCCccccch
Confidence 899999999877655444
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.80 E-value=1.2e-18 Score=172.13 Aligned_cols=248 Identities=19% Similarity=0.265 Sum_probs=173.2
Q ss_pred CCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCc-ccCCCCCCCeEeccCCCCCCc-chhhhcCCCCcEEec
Q 044595 203 PHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPL-GISKLVSLQHLDLSESDIEEL-PGELKALVNLKCLDL 280 (558)
Q Consensus 203 ~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l 280 (558)
.++++++++++.+..+|..+ .++|++|++++|.++.+|. .++++++|++|++++|.++.+ |..++.+++|++|++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp EETTEEECTTSCCCSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCeEEEecCCCccccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 47899999999999998763 3789999999999998865 799999999999999999977 778999999999999
Q ss_pred cCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhccCCCcceEEEEEccchhHHHHhcccc
Q 044595 281 EYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGLKSLEVISFTLRSSHGLQMILSSDQ 360 (558)
Q Consensus 281 ~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~ 360 (558)
++| .+..+|.. + .++|++|++.++... ......+..+++|+.|++..+......
T Consensus 108 s~n-~l~~l~~~-~--~~~L~~L~l~~n~l~---------------~~~~~~~~~l~~L~~L~l~~n~l~~~~------- 161 (330)
T 1xku_A 108 SKN-QLKELPEK-M--PKTLQELRVHENEIT---------------KVRKSVFNGLNQMIVVELGTNPLKSSG------- 161 (330)
T ss_dssp CSS-CCSBCCSS-C--CTTCCEEECCSSCCC---------------BBCHHHHTTCTTCCEEECCSSCCCGGG-------
T ss_pred CCC-cCCccChh-h--cccccEEECCCCccc---------------ccCHhHhcCCccccEEECCCCcCCccC-------
Confidence 998 67888876 2 379999999887653 234456778888888887755432211
Q ss_pred ccccccceeeeeccCCCcccccchhhhhhhhhhhhccccccceeEeccCCcccccccccccEEEEcCCCCCCCc--hhhh
Q 044595 361 LRSCTRALSFQCFNDSTSLEVSALADLKQLKMLRIARSEILEELKMDCAGEVRQFVFHSLNKVEIYGCSKLKDL--TFLV 438 (558)
Q Consensus 361 ~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l--~~l~ 438 (558)
.....+..+++|+.|+++++ .+..++.. .+++|++|+++++ .++.+ ..++
T Consensus 162 ------------------~~~~~~~~l~~L~~L~l~~n-~l~~l~~~--------~~~~L~~L~l~~n-~l~~~~~~~~~ 213 (330)
T 1xku_A 162 ------------------IENGAFQGMKKLSYIRIADT-NITTIPQG--------LPPSLTELHLDGN-KITKVDAASLK 213 (330)
T ss_dssp ------------------BCTTGGGGCTTCCEEECCSS-CCCSCCSS--------CCTTCSEEECTTS-CCCEECTGGGT
T ss_pred ------------------cChhhccCCCCcCEEECCCC-ccccCCcc--------ccccCCEEECCCC-cCCccCHHHhc
Confidence 01113455666777777665 33333221 2467777777776 45543 3466
Q ss_pred ccCCCceEEEecCchhHHHhhcCccCCcccccccCCCCcccceeeccCcccccccccCCCCCCCcceEeeecCCCCcCCC
Q 044595 439 FAPNLKSIKVTGSHAMEAIISVGKFAEVPEVMANLNPFAKLQNLEVIGAINLKSIYWKPLRFPHLKTMSFFHCNKLKMLP 518 (558)
Q Consensus 439 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~l~~L~~L~i~~C~~L~~lP 518 (558)
.+++|+.|++++|..-. ++ +..+..+++|++|+++++ .+..+|.....+++|++|++++| +++.+|
T Consensus 214 ~l~~L~~L~Ls~n~l~~-~~-----------~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~ 279 (330)
T 1xku_A 214 GLNNLAKLGLSFNSISA-VD-----------NGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIG 279 (330)
T ss_dssp TCTTCCEEECCSSCCCE-EC-----------TTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCC
T ss_pred CCCCCCEEECCCCcCce-eC-----------hhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCC-cCCccC
Confidence 67777777777765311 10 113455677777777775 46666665666777777777765 566666
Q ss_pred CCC
Q 044595 519 LDS 521 (558)
Q Consensus 519 ~~~ 521 (558)
...
T Consensus 280 ~~~ 282 (330)
T 1xku_A 280 SND 282 (330)
T ss_dssp TTS
T ss_pred hhh
Confidence 543
No 46
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.80 E-value=2.6e-19 Score=174.81 Aligned_cols=124 Identities=21% Similarity=0.248 Sum_probs=86.5
Q ss_pred EEEeecccccccCCCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCccc---CcccCCCCCCCeEeccCCC
Q 044595 185 RLSLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSL---PLGISKLVSLQHLDLSESD 261 (558)
Q Consensus 185 ~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l---p~~i~~L~~L~~L~l~~~~ 261 (558)
.++..++.++.+|. ...+++++|++++|.+..+|..++.++++|++|++++|.++.+ |..+..+++|++|++++|.
T Consensus 11 ~l~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~ 89 (306)
T 2z66_A 11 EIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89 (306)
T ss_dssp EEECCSSCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred EEEcCCCCcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc
Confidence 45555566666554 1235777888888877777777677788888888888777644 4566677788888888887
Q ss_pred CCCcchhhhcCCCCcEEeccCCCCCCcCch-hhhcCCCCCcEEEeeccCC
Q 044595 262 IEELPGELKALVNLKCLDLEYTGNLITIPR-QLISNLSRLHVLRMFGAGH 310 (558)
Q Consensus 262 l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~ 310 (558)
+..+|..+..+++|++|++++| .+..++. ..+..+++|++|++.++..
T Consensus 90 i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l 138 (306)
T 2z66_A 90 VITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHT 138 (306)
T ss_dssp EEEEEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCC
T ss_pred cccChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcC
Confidence 7777777777788888888776 4555543 3367777777777766543
No 47
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.80 E-value=6.5e-19 Score=190.01 Aligned_cols=129 Identities=26% Similarity=0.335 Sum_probs=106.1
Q ss_pred ccceEEEeecccccccC--CCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCc-ccCCCCCCCeEec
Q 044595 181 EKARRLSLMHNQITNLS--EIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPL-GISKLVSLQHLDL 257 (558)
Q Consensus 181 ~~lr~L~l~~~~~~~l~--~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l 257 (558)
..+++|++++|.++.++ .+..+++|++|++++|.+..+++..|.++++|++|+|++|.++.+|. .++++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 47889999999988875 47888999999999999988888878889999999999999988865 5788999999999
Q ss_pred cCCCCCCcchh-hhcCCCCcEEeccCCCCCCc--CchhhhcCCCCCcEEEeeccCCC
Q 044595 258 SESDIEELPGE-LKALVNLKCLDLEYTGNLIT--IPRQLISNLSRLHVLRMFGAGHN 311 (558)
Q Consensus 258 ~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~--lp~~~i~~l~~L~~L~l~~~~~~ 311 (558)
++|.++.+|.. ++.+++|++|++++| .+.. +|.. ++.+++|++|++.++...
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~-~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECCSSCCC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccC-ccccCCCchh-hccchhhhhhcccCcccc
Confidence 99988888764 788899999999888 4443 3444 788899999988876543
No 48
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.80 E-value=1.1e-18 Score=188.12 Aligned_cols=115 Identities=26% Similarity=0.340 Sum_probs=102.3
Q ss_pred CCCCCcccceEEEeecccccccCC--CCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCc-ccCCCCC
Q 044595 175 PDVTGWEKARRLSLMHNQITNLSE--IPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPL-GISKLVS 251 (558)
Q Consensus 175 ~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~i~~L~~ 251 (558)
..+..++++++|++++|.++.++. +..+++|++|++++|.+..+|+..|.++.+|++|++++|.++.+|. .++++++
T Consensus 70 ~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~ 149 (635)
T 4g8a_A 70 YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 149 (635)
T ss_dssp TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTT
T ss_pred HHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcc
Confidence 357888999999999999998864 7889999999999999999999889999999999999999998865 5899999
Q ss_pred CCeEeccCCCCC--CcchhhhcCCCCcEEeccCCCCCCcCc
Q 044595 252 LQHLDLSESDIE--ELPGELKALVNLKCLDLEYTGNLITIP 290 (558)
Q Consensus 252 L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~l~~lp 290 (558)
|++|++++|.+. .+|..++.+++|++|++++| .+..++
T Consensus 150 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~ 189 (635)
T 4g8a_A 150 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIY 189 (635)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEEC
T ss_pred cCeeccccCccccCCCchhhccchhhhhhcccCc-cccccc
Confidence 999999999887 45788999999999999987 454443
No 49
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.79 E-value=5.2e-19 Score=181.80 Aligned_cols=222 Identities=22% Similarity=0.286 Sum_probs=155.5
Q ss_pred ccceEEEeecccccccC--CCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCc-ccCCCCCCCeEec
Q 044595 181 EKARRLSLMHNQITNLS--EIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPL-GISKLVSLQHLDL 257 (558)
Q Consensus 181 ~~lr~L~l~~~~~~~l~--~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l 257 (558)
++++.|++++|.+..++ .+..+++|++|++++|.+..++...|.++++|++|++++|.++.+|. .+..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 56777888877777654 46777778888888887777776667777888888888887777754 4777788888888
Q ss_pred cCCCCCCcch-hhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhccC
Q 044595 258 SESDIEELPG-ELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGL 336 (558)
Q Consensus 258 ~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l 336 (558)
++|.+..+|. .+..+++|++|++++|+.+..++...+.++++|++|++.++.... +..+..+
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-----------------~~~~~~l 206 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-----------------IPNLTPL 206 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-----------------CCCCTTC
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-----------------ccccCCC
Confidence 8887777665 467777888888877767777777667777788888877665432 1123444
Q ss_pred CCcceEEEEEccchhHHHHhccccccccccceeeeeccCCCcccccchhhhhhhhhhhhccccccceeEeccCCcccccc
Q 044595 337 KSLEVISFTLRSSHGLQMILSSDQLRSCTRALSFQCFNDSTSLEVSALADLKQLKMLRIARSEILEELKMDCAGEVRQFV 416 (558)
Q Consensus 337 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~ 416 (558)
++|+.|+++ ++ .+.......+..+++|+.|++.++ .+..+.......
T Consensus 207 ~~L~~L~Ls--------------------------~N-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~----- 253 (440)
T 3zyj_A 207 IKLDELDLS--------------------------GN-HLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDN----- 253 (440)
T ss_dssp SSCCEEECT--------------------------TS-CCCEECTTTTTTCTTCCEEECTTC-CCCEECTTSSTT-----
T ss_pred cccCEEECC--------------------------CC-ccCccChhhhccCccCCEEECCCC-ceeEEChhhhcC-----
Confidence 555554443 32 222222234677888999999887 566665554442
Q ss_pred cccccEEEEcCCCCCCCchh--hhccCCCceEEEecCch
Q 044595 417 FHSLNKVEIYGCSKLKDLTF--LVFAPNLKSIKVTGSHA 453 (558)
Q Consensus 417 ~~~L~~L~L~~~~~l~~l~~--l~~l~~L~~L~l~~c~~ 453 (558)
+++|+.|+|+++ .++.++. +..+++|+.|+|++|+.
T Consensus 254 l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 254 LQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred CCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCCc
Confidence 788999999998 6777553 57789999999988764
No 50
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.79 E-value=1.2e-18 Score=172.20 Aligned_cols=263 Identities=16% Similarity=0.211 Sum_probs=176.8
Q ss_pred CCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCccc-CcccCCCCCCCeEeccCCCCCCc-chhhhcCCCCcEEec
Q 044595 203 PHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSL-PLGISKLVSLQHLDLSESDIEEL-PGELKALVNLKCLDL 280 (558)
Q Consensus 203 ~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l 280 (558)
.+++.++++++.+..+|..+ .++|++|++++|.++.+ |..++++++|++|++++|.++.+ |..++.+++|++|++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp EETTEEECCSSCCSSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred ccCCEEECCCCCccccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 46899999999999999864 47899999999999987 45799999999999999999977 678999999999999
Q ss_pred cCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhccCCCcceEEEEEccchhHHHHhcccc
Q 044595 281 EYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGLKSLEVISFTLRSSHGLQMILSSDQ 360 (558)
Q Consensus 281 ~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~ 360 (558)
++| .+..+|.. +. ++|++|++.++..... ....+..+++|+.|++..+.............
T Consensus 110 ~~n-~l~~l~~~-~~--~~L~~L~l~~n~i~~~---------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 170 (332)
T 2ft3_A 110 SKN-HLVEIPPN-LP--SSLVELRIHDNRIRKV---------------PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170 (332)
T ss_dssp CSS-CCCSCCSS-CC--TTCCEEECCSSCCCCC---------------CSGGGSSCSSCCEEECCSCCCBGGGSCTTSSC
T ss_pred CCC-cCCccCcc-cc--ccCCEEECCCCccCcc---------------CHhHhCCCccCCEEECCCCccccCCCCccccc
Confidence 998 67788876 33 8999999998866431 22346788999999988766543222112111
Q ss_pred ccccccceeeeeccCCCcccccchhhhhhhhhhhhccccccceeEeccCCcccccccccccEEEEcCCCCCCCch--hhh
Q 044595 361 LRSCTRALSFQCFNDSTSLEVSALADLKQLKMLRIARSEILEELKMDCAGEVRQFVFHSLNKVEIYGCSKLKDLT--FLV 438 (558)
Q Consensus 361 ~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~--~l~ 438 (558)
.. .|+.|+++++.- ..++.. + .++|++|+++++ .+..+++.... .+++|+.|+++++ .+..++ .++
T Consensus 171 ~l-~L~~L~l~~n~l-~~l~~~-~--~~~L~~L~l~~n-~i~~~~~~~l~-----~l~~L~~L~L~~N-~l~~~~~~~~~ 238 (332)
T 2ft3_A 171 GL-KLNYLRISEAKL-TGIPKD-L--PETLNELHLDHN-KIQAIELEDLL-----RYSKLYRLGLGHN-QIRMIENGSLS 238 (332)
T ss_dssp SC-CCSCCBCCSSBC-SSCCSS-S--CSSCSCCBCCSS-CCCCCCTTSST-----TCTTCSCCBCCSS-CCCCCCTTGGG
T ss_pred CC-ccCEEECcCCCC-CccCcc-c--cCCCCEEECCCC-cCCccCHHHhc-----CCCCCCEEECCCC-cCCcCChhHhh
Confidence 11 566666655432 222211 1 256777777766 34444333222 2667777777776 555543 466
Q ss_pred ccCCCceEEEecCchhHHHhhcCccCCcccccccCCCCcccceeeccCcccccccccCCC-------CCCCcceEeeecC
Q 044595 439 FAPNLKSIKVTGSHAMEAIISVGKFAEVPEVMANLNPFAKLQNLEVIGAINLKSIYWKPL-------RFPHLKTMSFFHC 511 (558)
Q Consensus 439 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~-------~l~~L~~L~i~~C 511 (558)
.+++|+.|++++|.. + .++..+..+++|++|+++++ .+..++.... .+++|+.|++.++
T Consensus 239 ~l~~L~~L~L~~N~l-~------------~lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N 304 (332)
T 2ft3_A 239 FLPTLRELHLDNNKL-S------------RVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNN 304 (332)
T ss_dssp GCTTCCEEECCSSCC-C------------BCCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSS
T ss_pred CCCCCCEEECCCCcC-e------------ecChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecC
Confidence 777777777777643 1 22234556677777777764 4555543211 1456777777776
Q ss_pred CC
Q 044595 512 NK 513 (558)
Q Consensus 512 ~~ 513 (558)
|-
T Consensus 305 ~~ 306 (332)
T 2ft3_A 305 PV 306 (332)
T ss_dssp SS
T ss_pred cc
Confidence 53
No 51
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.79 E-value=2.4e-18 Score=182.37 Aligned_cols=76 Identities=18% Similarity=0.220 Sum_probs=42.3
Q ss_pred cccccEEEEcCCCCCCCchhhhccCCCceEEEecCchhHHHhhcCccCCcccccccCCCCcccceeeccCcccccccccC
Q 044595 417 FHSLNKVEIYGCSKLKDLTFLVFAPNLKSIKVTGSHAMEAIISVGKFAEVPEVMANLNPFAKLQNLEVIGAINLKSIYWK 496 (558)
Q Consensus 417 ~~~L~~L~L~~~~~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~ 496 (558)
+++|+.|+++++ .++.++ ..+++|+.|++++|.. +.+ +. .+++|++|++++| ++..+|..
T Consensus 220 ~~~L~~L~Ls~N-~L~~lp--~~l~~L~~L~Ls~N~L-~~l------------p~---~~~~L~~L~Ls~N-~L~~lp~~ 279 (622)
T 3g06_A 220 PSGLKELIVSGN-RLTSLP--VLPSELKELMVSGNRL-TSL------------PM---LPSGLLSLSVYRN-QLTRLPES 279 (622)
T ss_dssp CTTCCEEECCSS-CCSCCC--CCCTTCCEEECCSSCC-SCC------------CC---CCTTCCEEECCSS-CCCSCCGG
T ss_pred CCCCCEEEccCC-ccCcCC--CCCCcCcEEECCCCCC-CcC------------Cc---ccccCcEEeCCCC-CCCcCCHH
Confidence 356666666666 555555 4456666666666532 111 11 3456666666664 45555555
Q ss_pred CCCCCCcceEeeecCC
Q 044595 497 PLRFPHLKTMSFFHCN 512 (558)
Q Consensus 497 ~~~l~~L~~L~i~~C~ 512 (558)
...+++|+.|++++++
T Consensus 280 l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 280 LIHLSSETTVNLEGNP 295 (622)
T ss_dssp GGGSCTTCEEECCSCC
T ss_pred HhhccccCEEEecCCC
Confidence 5556666666666654
No 52
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.79 E-value=2.3e-20 Score=183.13 Aligned_cols=103 Identities=18% Similarity=0.162 Sum_probs=72.7
Q ss_pred CCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcccCCCCCCCeEeccCCCCCCcchhhhcCCCCcEEe
Q 044595 200 PTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHLDLSESDIEELPGELKALVNLKCLD 279 (558)
Q Consensus 200 ~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~ 279 (558)
..+++|++|++++|.+..+++..+..+++|++|++++|.++.++. ++.+++|++|++++|.++.+| ..++|++|+
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~L~ 105 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL----VGPSIETLH 105 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEE----ECTTCCEEE
T ss_pred ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccccc----CCCCcCEEE
Confidence 445677778888777777776667777888888888877776654 777778888888777776655 336777888
Q ss_pred ccCCCCCCcCchhhhcCCCCCcEEEeeccCCC
Q 044595 280 LEYTGNLITIPRQLISNLSRLHVLRMFGAGHN 311 (558)
Q Consensus 280 l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 311 (558)
+++| .+..++. ..+++|++|++.++...
T Consensus 106 l~~n-~l~~~~~---~~~~~L~~L~l~~N~l~ 133 (317)
T 3o53_A 106 AANN-NISRVSC---SRGQGKKNIYLANNKIT 133 (317)
T ss_dssp CCSS-CCSEEEE---CCCSSCEEEECCSSCCC
T ss_pred CCCC-ccCCcCc---cccCCCCEEECCCCCCC
Confidence 7776 5555553 34677777777766553
No 53
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.79 E-value=8e-19 Score=181.08 Aligned_cols=221 Identities=23% Similarity=0.261 Sum_probs=154.0
Q ss_pred ccceEEEeecccccccC--CCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcc-cCCCCCCCeEec
Q 044595 181 EKARRLSLMHNQITNLS--EIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLG-ISKLVSLQHLDL 257 (558)
Q Consensus 181 ~~lr~L~l~~~~~~~l~--~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l 257 (558)
++++.|++++|.+..++ .+..+++|++|++++|.+..+++..|.++++|++|++++|.++.+|.. ++.+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 56778888887777763 467778888888888887777766677788888888888877777543 677788888888
Q ss_pred cCCCCCCcch-hhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhccC
Q 044595 258 SESDIEELPG-ELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGL 336 (558)
Q Consensus 258 ~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l 336 (558)
++|.+..+|. .+..+++|++|++++|+.+..++...+.++++|++|++.++.... +..+..+
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-----------------~~~~~~l 217 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-----------------MPNLTPL 217 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-----------------CCCCTTC
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-----------------ccccccc
Confidence 8887777765 467778888888887777777777667778888888877765432 1124445
Q ss_pred CCcceEEEEEccchhHHHHhccccccccccceeeeeccCCCcccccchhhhhhhhhhhhccccccceeEeccCCcccccc
Q 044595 337 KSLEVISFTLRSSHGLQMILSSDQLRSCTRALSFQCFNDSTSLEVSALADLKQLKMLRIARSEILEELKMDCAGEVRQFV 416 (558)
Q Consensus 337 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~ 416 (558)
++|+.|+++.+. +.......+..+++|+.|+++++ .+..+.+.....
T Consensus 218 ~~L~~L~Ls~N~---------------------------l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~----- 264 (452)
T 3zyi_A 218 VGLEELEMSGNH---------------------------FPEIRPGSFHGLSSLKKLWVMNS-QVSLIERNAFDG----- 264 (452)
T ss_dssp TTCCEEECTTSC---------------------------CSEECGGGGTTCTTCCEEECTTS-CCCEECTTTTTT-----
T ss_pred ccccEEECcCCc---------------------------CcccCcccccCccCCCEEEeCCC-cCceECHHHhcC-----
Confidence 555555544322 22222234667788888888877 555555444332
Q ss_pred cccccEEEEcCCCCCCCchh--hhccCCCceEEEecCc
Q 044595 417 FHSLNKVEIYGCSKLKDLTF--LVFAPNLKSIKVTGSH 452 (558)
Q Consensus 417 ~~~L~~L~L~~~~~l~~l~~--l~~l~~L~~L~l~~c~ 452 (558)
+++|+.|+|+++ .++.++. +..+++|+.|+|++|+
T Consensus 265 l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 265 LASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 788899999888 6766543 5678888899888776
No 54
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.78 E-value=1.7e-18 Score=178.01 Aligned_cols=117 Identities=24% Similarity=0.341 Sum_probs=68.8
Q ss_pred ccceEEEeecccccccCCCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcccCCCCCCCeEeccCC
Q 044595 181 EKARRLSLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHLDLSES 260 (558)
Q Consensus 181 ~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~ 260 (558)
.+++.|++++|.+..++.+. ++|++|++++|.+..+|. +..+++|++|++++|.++.+|..+ .+|++|++++|
T Consensus 111 ~~L~~L~l~~n~l~~l~~~~--~~L~~L~L~~n~l~~lp~--~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n 183 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQLEKLPE--LQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNN 183 (454)
T ss_dssp TTCCEEECCSSCCSCCCSCC--TTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSS
T ss_pred CCCcEEECCCCccCcccCCC--CCCCEEECcCCCCCCCcc--cCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCC
Confidence 45666666666555544332 466666666666666652 566666666666666666665433 36666666666
Q ss_pred CCCCcchhhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCC
Q 044595 261 DIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGH 310 (558)
Q Consensus 261 ~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 310 (558)
.++.+| .++.+++|++|++++| .+..+|.. .++|++|++.++..
T Consensus 184 ~l~~l~-~~~~l~~L~~L~l~~N-~l~~l~~~----~~~L~~L~l~~n~l 227 (454)
T 1jl5_A 184 QLEELP-ELQNLPFLTAIYADNN-SLKKLPDL----PLSLESIVAGNNIL 227 (454)
T ss_dssp CCSSCC-CCTTCTTCCEEECCSS-CCSSCCCC----CTTCCEEECCSSCC
T ss_pred cCCcCc-cccCCCCCCEEECCCC-cCCcCCCC----cCcccEEECcCCcC
Confidence 666665 4666666666666665 34444431 24566666655533
No 55
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.78 E-value=3.4e-18 Score=175.77 Aligned_cols=218 Identities=19% Similarity=0.217 Sum_probs=153.8
Q ss_pred ccceEEEeecccccccCCCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcccCCCCCCCeEeccCC
Q 044595 181 EKARRLSLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHLDLSES 260 (558)
Q Consensus 181 ~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~ 260 (558)
++++.|++++|.+..++.. .++|++|++++|.+..++.. .++|++|++++|.++.+| .++++++|++|++++|
T Consensus 91 ~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N 163 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNN 163 (454)
T ss_dssp TTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS
T ss_pred CCCCEEEccCCcCCccccc--cCCCcEEECCCCccCcccCC----CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCC
Confidence 6889999999988887653 47899999999988877642 268999999999998888 5899999999999999
Q ss_pred CCCCcchhhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhccCCCcc
Q 044595 261 DIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGLKSLE 340 (558)
Q Consensus 261 ~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~ 340 (558)
.++.+|..+ .+|++|++++| .+..+|. ++++++|++|++.++....+. ....+|+
T Consensus 164 ~l~~lp~~~---~~L~~L~L~~n-~l~~l~~--~~~l~~L~~L~l~~N~l~~l~-------------------~~~~~L~ 218 (454)
T 1jl5_A 164 SLKKLPDLP---PSLEFIAAGNN-QLEELPE--LQNLPFLTAIYADNNSLKKLP-------------------DLPLSLE 218 (454)
T ss_dssp CCSCCCCCC---TTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCCSSCC-------------------CCCTTCC
T ss_pred cCcccCCCc---ccccEEECcCC-cCCcCcc--ccCCCCCCEEECCCCcCCcCC-------------------CCcCccc
Confidence 888888543 58999999988 6677873 789999999999887654211 0124788
Q ss_pred eEEEEEccchhHHHHhccccccccccceeeeeccCCCcccccchhhhhhhhhhhhccccccceeEeccCCcccccccccc
Q 044595 341 VISFTLRSSHGLQMILSSDQLRSCTRALSFQCFNDSTSLEVSALADLKQLKMLRIARSEILEELKMDCAGEVRQFVFHSL 420 (558)
Q Consensus 341 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L 420 (558)
.|++..+....++.+ ....+|+.|+++++.- ..++ ..+++|+.|+++++ .+..++. .+++|
T Consensus 219 ~L~l~~n~l~~lp~~----~~l~~L~~L~l~~N~l-~~l~----~~~~~L~~L~l~~N-~l~~l~~---------~~~~L 279 (454)
T 1jl5_A 219 SIVAGNNILEELPEL----QNLPFLTTIYADNNLL-KTLP----DLPPSLEALNVRDN-YLTDLPE---------LPQSL 279 (454)
T ss_dssp EEECCSSCCSSCCCC----TTCTTCCEEECCSSCC-SSCC----SCCTTCCEEECCSS-CCSCCCC---------CCTTC
T ss_pred EEECcCCcCCccccc----CCCCCCCEEECCCCcC-Cccc----ccccccCEEECCCC-cccccCc---------ccCcC
Confidence 888877766544432 1233688888877432 2222 12368888888877 3443322 14678
Q ss_pred cEEEEcCCCCCCCchhhhccCCCceEEEecCc
Q 044595 421 NKVEIYGCSKLKDLTFLVFAPNLKSIKVTGSH 452 (558)
Q Consensus 421 ~~L~L~~~~~l~~l~~l~~l~~L~~L~l~~c~ 452 (558)
+.|+++++ .++.++.+ .++|+.|++++|.
T Consensus 280 ~~L~ls~N-~l~~l~~~--~~~L~~L~l~~N~ 308 (454)
T 1jl5_A 280 TFLDVSEN-IFSGLSEL--PPNLYYLNASSNE 308 (454)
T ss_dssp CEEECCSS-CCSEESCC--CTTCCEEECCSSC
T ss_pred CEEECcCC-ccCcccCc--CCcCCEEECcCCc
Confidence 88888877 45554322 2566666666654
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.77 E-value=5.8e-18 Score=174.65 Aligned_cols=240 Identities=19% Similarity=0.233 Sum_probs=164.0
Q ss_pred eEEEeecccccccCCCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccC-cccCCCCCCCeEeccCCCC
Q 044595 184 RRLSLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLP-LGISKLVSLQHLDLSESDI 262 (558)
Q Consensus 184 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~l 262 (558)
+.++..+..+..+|.- -.+++++|++++|.+..+++..|.++++|++|++++|.++.++ ..+.++++|++|++++|.+
T Consensus 57 ~~v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQG-IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp CEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred cEEEECCCCcCccCCC-CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence 4555666666665531 2257777788877777776666777778888888877777653 5677777788888877777
Q ss_pred CCcchh-hhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhccCCCcce
Q 044595 263 EELPGE-LKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGLKSLEV 341 (558)
Q Consensus 263 ~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~ 341 (558)
+.+|.. +..+++|++|++++| .+..+|...+.++++|++|++.++...
T Consensus 136 ~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l------------------------------ 184 (452)
T 3zyi_A 136 TVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKL------------------------------ 184 (452)
T ss_dssp SBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTC------------------------------
T ss_pred CccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCc------------------------------
Confidence 777654 666777777777776 566666655667777777776543221
Q ss_pred EEEEEccchhHHHHhccccccccccceeeeeccCCCcccccchhhhhhhhhhhhccccccceeEeccCCccccccccccc
Q 044595 342 ISFTLRSSHGLQMILSSDQLRSCTRALSFQCFNDSTSLEVSALADLKQLKMLRIARSEILEELKMDCAGEVRQFVFHSLN 421 (558)
Q Consensus 342 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~ 421 (558)
...+...+..+++|+.|+++++ .+..++ ... .+++|+
T Consensus 185 -----------------------------------~~i~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~------~l~~L~ 221 (452)
T 3zyi_A 185 -----------------------------------EYISEGAFEGLFNLKYLNLGMC-NIKDMP-NLT------PLVGLE 221 (452)
T ss_dssp -----------------------------------CEECTTTTTTCTTCCEEECTTS-CCSSCC-CCT------TCTTCC
T ss_pred -----------------------------------cccChhhccCCCCCCEEECCCC-cccccc-ccc------cccccc
Confidence 1111123556778888888877 444443 222 378999
Q ss_pred EEEEcCCCCCCCc--hhhhccCCCceEEEecCchhHHHhhcCccCCcccccccCCCCcccceeeccCcccccccccC-CC
Q 044595 422 KVEIYGCSKLKDL--TFLVFAPNLKSIKVTGSHAMEAIISVGKFAEVPEVMANLNPFAKLQNLEVIGAINLKSIYWK-PL 498 (558)
Q Consensus 422 ~L~L~~~~~l~~l--~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~-~~ 498 (558)
.|+|+++ .++.+ ..+..+++|+.|++++|..-.. .+..+..+++|++|+|+++ ++..++.. ..
T Consensus 222 ~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~------------~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~ 287 (452)
T 3zyi_A 222 ELEMSGN-HFPEIRPGSFHGLSSLKKLWVMNSQVSLI------------ERNAFDGLASLVELNLAHN-NLSSLPHDLFT 287 (452)
T ss_dssp EEECTTS-CCSEECGGGGTTCTTCCEEECTTSCCCEE------------CTTTTTTCTTCCEEECCSS-CCSCCCTTSST
T ss_pred EEECcCC-cCcccCcccccCccCCCEEEeCCCcCceE------------CHHHhcCCCCCCEEECCCC-cCCccChHHhc
Confidence 9999998 56654 3578899999999998764211 1235677899999999986 67777653 34
Q ss_pred CCCCcceEeeecCC
Q 044595 499 RFPHLKTMSFFHCN 512 (558)
Q Consensus 499 ~l~~L~~L~i~~C~ 512 (558)
.+++|+.|++.++|
T Consensus 288 ~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 288 PLRYLVELHLHHNP 301 (452)
T ss_dssp TCTTCCEEECCSSC
T ss_pred cccCCCEEEccCCC
Confidence 68899999998764
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.77 E-value=3.4e-18 Score=166.85 Aligned_cols=128 Identities=27% Similarity=0.360 Sum_probs=111.3
Q ss_pred ccceEEEeecccccccCC--CCCCCCceEEEeecCCcccc---CchhhhCCCCCcEEEcCCCCCcccCcccCCCCCCCeE
Q 044595 181 EKARRLSLMHNQITNLSE--IPTCPHLLTFFLNKNRFQMI---PNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHL 255 (558)
Q Consensus 181 ~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~---~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L 255 (558)
+++++|++++|.+..++. +..+++|++|++++|.+..+ +.. +..+++|++|++++|.++.+|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS-DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH-HHSCSCCCEEECCSCSEEEEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccc-cccccccCEEECCCCccccChhhcCCCCCCCEE
Confidence 689999999999998875 68899999999999998765 344 667999999999999999999999999999999
Q ss_pred eccCCCCCCcch--hhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCC
Q 044595 256 DLSESDIEELPG--ELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGH 310 (558)
Q Consensus 256 ~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 310 (558)
++++|.+..++. .+..+++|++|++++| .+...+...++.+++|++|++.++..
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l 162 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSF 162 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTS-CCEECSTTTTTTCTTCCEEECTTCEE
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCC-cCCccchhhcccCcCCCEEECCCCcc
Confidence 999999988874 6899999999999998 45555555588899999999987643
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.76 E-value=1.2e-17 Score=171.59 Aligned_cols=240 Identities=18% Similarity=0.261 Sum_probs=158.5
Q ss_pred eEEEeecccccccCCCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccC-cccCCCCCCCeEeccCCCC
Q 044595 184 RRLSLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLP-LGISKLVSLQHLDLSESDI 262 (558)
Q Consensus 184 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~l 262 (558)
+.++..+..+..+|.- -.++++.|++++|.+..++...|.++++|++|++++|.++.++ ..+.++++|++|++++|.+
T Consensus 46 ~~v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 124 (440)
T 3zyj_A 46 SKVICVRKNLREVPDG-ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124 (440)
T ss_dssp CEEECCSCCCSSCCSC-CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred CEEEeCCCCcCcCCCC-CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence 4555555556655531 1256777777777777776666777777777777777777553 4566777777777777777
Q ss_pred CCcch-hhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhccCCCcce
Q 044595 263 EELPG-ELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGLKSLEV 341 (558)
Q Consensus 263 ~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~ 341 (558)
+.+|. .+..+++|++|++++| .+..+|...+.++++|++|++.++...
T Consensus 125 ~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l------------------------------ 173 (440)
T 3zyj_A 125 TTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRL------------------------------ 173 (440)
T ss_dssp SSCCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTC------------------------------
T ss_pred CeeCHhHhhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCc------------------------------
Confidence 76665 3666777777777766 455666555666666666666543221
Q ss_pred EEEEEccchhHHHHhccccccccccceeeeeccCCCcccccchhhhhhhhhhhhccccccceeEeccCCccccccccccc
Q 044595 342 ISFTLRSSHGLQMILSSDQLRSCTRALSFQCFNDSTSLEVSALADLKQLKMLRIARSEILEELKMDCAGEVRQFVFHSLN 421 (558)
Q Consensus 342 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~ 421 (558)
...+...+..+++|+.|+++++ .+..++. .. .+++|+
T Consensus 174 -----------------------------------~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~-~~------~l~~L~ 210 (440)
T 3zyj_A 174 -----------------------------------SYISEGAFEGLSNLRYLNLAMC-NLREIPN-LT------PLIKLD 210 (440)
T ss_dssp -----------------------------------CEECTTTTTTCSSCCEEECTTS-CCSSCCC-CT------TCSSCC
T ss_pred -----------------------------------ceeCcchhhcccccCeecCCCC-cCccccc-cC------CCcccC
Confidence 1111123556778888888877 4555442 22 278999
Q ss_pred EEEEcCCCCCCCc--hhhhccCCCceEEEecCchhHHHhhcCccCCcccccccCCCCcccceeeccCcccccccccC-CC
Q 044595 422 KVEIYGCSKLKDL--TFLVFAPNLKSIKVTGSHAMEAIISVGKFAEVPEVMANLNPFAKLQNLEVIGAINLKSIYWK-PL 498 (558)
Q Consensus 422 ~L~L~~~~~l~~l--~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~-~~ 498 (558)
.|+|+++ .++.+ ..+..+++|+.|++++|..- .+ .+..+..+++|++|+|+++ ++..++.. ..
T Consensus 211 ~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~-----------~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~ 276 (440)
T 3zyj_A 211 ELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQSQIQ-VI-----------ERNAFDNLQSLVEINLAHN-NLTLLPHDLFT 276 (440)
T ss_dssp EEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCC-EE-----------CTTSSTTCTTCCEEECTTS-CCCCCCTTTTS
T ss_pred EEECCCC-ccCccChhhhccCccCCEEECCCCcee-EE-----------ChhhhcCCCCCCEEECCCC-CCCccChhHhc
Confidence 9999998 66664 35778899999999887642 11 1135677899999999885 67776653 34
Q ss_pred CCCCcceEeeecCC
Q 044595 499 RFPHLKTMSFFHCN 512 (558)
Q Consensus 499 ~l~~L~~L~i~~C~ 512 (558)
.+++|+.|+++++|
T Consensus 277 ~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 277 PLHHLERIHLHHNP 290 (440)
T ss_dssp SCTTCCEEECCSSC
T ss_pred cccCCCEEEcCCCC
Confidence 67899999987754
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.76 E-value=1.3e-17 Score=160.90 Aligned_cols=219 Identities=18% Similarity=0.231 Sum_probs=147.1
Q ss_pred eEEEeecccccccCCCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCccc-CcccCCCCCCCeEeccCCC-
Q 044595 184 RRLSLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSL-PLGISKLVSLQHLDLSESD- 261 (558)
Q Consensus 184 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~- 261 (558)
+.++..++.+..+|. ...++++.|++++|.+..++...+..+++|++|++++|.++.+ |..++.+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp CEEECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred eEEEcCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 455666666666653 2346788888888888877776677788888888888877766 6677788888888888885
Q ss_pred CCCc-chhhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhccCCCcc
Q 044595 262 IEEL-PGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGLKSLE 340 (558)
Q Consensus 262 l~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~ 340 (558)
+..+ |..+..+++|++|++++| .+..++...++++++|++|++.++..... ....++.+++|+
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------~~~~~~~l~~L~ 156 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNALQAL---------------PDDTFRDLGNLT 156 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCC---------------CTTTTTTCTTCC
T ss_pred ccccCHHHhcCCcCCCEEECCCC-cCCEECHhHhhCCcCCCEEECCCCccccc---------------CHhHhccCCCcc
Confidence 7766 556777888888888877 45556555577788888888877654321 112245556666
Q ss_pred eEEEEEccchhHHHHhccccccccccceeeeeccCCCcccccchhhhhhhhhhhhccccccceeEeccCCcccccccccc
Q 044595 341 VISFTLRSSHGLQMILSSDQLRSCTRALSFQCFNDSTSLEVSALADLKQLKMLRIARSEILEELKMDCAGEVRQFVFHSL 420 (558)
Q Consensus 341 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L 420 (558)
.|++..+.. ...+...+..+++|+.|+++++ .+..+.+.... .+++|
T Consensus 157 ~L~l~~n~l---------------------------~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~-----~l~~L 203 (285)
T 1ozn_A 157 HLFLHGNRI---------------------------SSVPERAFRGLHSLDRLLLHQN-RVAHVHPHAFR-----DLGRL 203 (285)
T ss_dssp EEECCSSCC---------------------------CEECTTTTTTCTTCCEEECCSS-CCCEECTTTTT-----TCTTC
T ss_pred EEECCCCcc---------------------------cccCHHHhcCccccCEEECCCC-cccccCHhHcc-----Ccccc
Confidence 665543321 1112123556778888888877 44444433333 27889
Q ss_pred cEEEEcCCCCCCCch--hhhccCCCceEEEecCch
Q 044595 421 NKVEIYGCSKLKDLT--FLVFAPNLKSIKVTGSHA 453 (558)
Q Consensus 421 ~~L~L~~~~~l~~l~--~l~~l~~L~~L~l~~c~~ 453 (558)
+.|+++++ .++.++ .+..+++|+.|++++|+.
T Consensus 204 ~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 204 MTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp CEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred cEeeCCCC-cCCcCCHHHcccCcccCEEeccCCCc
Confidence 99999888 666654 377888999999988765
No 60
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.75 E-value=2.1e-18 Score=168.69 Aligned_cols=253 Identities=19% Similarity=0.223 Sum_probs=193.3
Q ss_pred CCceEEEeecCCccc---cCchhhhCCCCCcEEEcCC-CCCc-ccCcccCCCCCCCeEeccCCCCC-CcchhhhcCCCCc
Q 044595 203 PHLLTFFLNKNRFQM---IPNDFFQFMPSLKVLNLSY-SKLT-SLPLGISKLVSLQHLDLSESDIE-ELPGELKALVNLK 276 (558)
Q Consensus 203 ~~Lr~L~l~~~~~~~---~~~~~~~~l~~L~~L~l~~-~~l~-~lp~~i~~L~~L~~L~l~~~~l~-~lp~~i~~l~~L~ 276 (558)
.+++.|+++++.+.. +|.. +.++++|++|++++ +.+. .+|..++++++|++|++++|.+. .+|..++.+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChh-HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 579999999999984 6655 88999999999995 7777 78999999999999999999998 8899999999999
Q ss_pred EEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhccCC-CcceEEEEEccchhHHHH
Q 044595 277 CLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGLK-SLEVISFTLRSSHGLQMI 355 (558)
Q Consensus 277 ~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~-~L~~L~l~~~~~~~~~~~ 355 (558)
+|++++|.....+|.. ++++++|++|++.++... ...+..+..+. +|+.|++..+...+
T Consensus 129 ~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~---------------~~~p~~l~~l~~~L~~L~L~~N~l~~---- 188 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPS-ISSLPNLVGITFDGNRIS---------------GAIPDSYGSFSKLFTSMTISRNRLTG---- 188 (313)
T ss_dssp EEECCSSEEESCCCGG-GGGCTTCCEEECCSSCCE---------------EECCGGGGCCCTTCCEEECCSSEEEE----
T ss_pred EEeCCCCccCCcCChH-HhcCCCCCeEECcCCccc---------------CcCCHHHhhhhhcCcEEECcCCeeec----
Confidence 9999998544467766 899999999999987652 23455667776 77777766443210
Q ss_pred hccccccccccceeeeeccCCCcccccchhhhhhhhhhhhccccccceeEeccCCcccccccccccEEEEcCCCCCCCch
Q 044595 356 LSSDQLRSCTRALSFQCFNDSTSLEVSALADLKQLKMLRIARSEILEELKMDCAGEVRQFVFHSLNKVEIYGCSKLKDLT 435 (558)
Q Consensus 356 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~ 435 (558)
. ....+..++ |+.|+++++. +....+.... .+++|+.|+++++.--..++
T Consensus 189 ----------------------~-~~~~~~~l~-L~~L~Ls~N~-l~~~~~~~~~-----~l~~L~~L~L~~N~l~~~~~ 238 (313)
T 1ogq_A 189 ----------------------K-IPPTFANLN-LAFVDLSRNM-LEGDASVLFG-----SDKNTQKIHLAKNSLAFDLG 238 (313)
T ss_dssp ----------------------E-CCGGGGGCC-CSEEECCSSE-EEECCGGGCC-----TTSCCSEEECCSSEECCBGG
T ss_pred ----------------------c-CChHHhCCc-ccEEECcCCc-ccCcCCHHHh-----cCCCCCEEECCCCceeeecC
Confidence 0 011244455 8999998873 3333333333 28899999999994333466
Q ss_pred hhhccCCCceEEEecCchhHHHhhcCccCCcccccccCCCCcccceeeccCcccccccccCCCCCCCcceEeeecCCCCc
Q 044595 436 FLVFAPNLKSIKVTGSHAMEAIISVGKFAEVPEVMANLNPFAKLQNLEVIGAINLKSIYWKPLRFPHLKTMSFFHCNKLK 515 (558)
Q Consensus 436 ~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~l~~L~~L~i~~C~~L~ 515 (558)
.+..+++|++|++++|..... .+..+..+++|++|+++++.--..+|.. ..+++|+.|++.+++.+.
T Consensus 239 ~~~~l~~L~~L~Ls~N~l~~~------------~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 239 KVGLSKNLNGLDLRNNRIYGT------------LPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp GCCCCTTCCEEECCSSCCEEC------------CCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEE
T ss_pred cccccCCCCEEECcCCcccCc------------CChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCcc
Confidence 778899999999999876322 2345678899999999997644467764 788999999999998887
Q ss_pred CCCC
Q 044595 516 MLPL 519 (558)
Q Consensus 516 ~lP~ 519 (558)
..|.
T Consensus 306 ~~p~ 309 (313)
T 1ogq_A 306 GSPL 309 (313)
T ss_dssp STTS
T ss_pred CCCC
Confidence 6664
No 61
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.73 E-value=2e-18 Score=184.69 Aligned_cols=308 Identities=17% Similarity=0.126 Sum_probs=148.3
Q ss_pred cccceEEEeecccccccC------CCCCCCCceEEEeecCCccccC----chhhhCCCCCcEEEcCCCCCcccCcccCCC
Q 044595 180 WEKARRLSLMHNQITNLS------EIPTCPHLLTFFLNKNRFQMIP----NDFFQFMPSLKVLNLSYSKLTSLPLGISKL 249 (558)
Q Consensus 180 ~~~lr~L~l~~~~~~~l~------~~~~~~~Lr~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L 249 (558)
+++++.|++.+|.+.+.. ....+++|++|++++|.+..+. ..++.++++|++|++++|.+..+|..++.+
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~ 242 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAA 242 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHC
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhh
Confidence 355666666665543321 1123455666666655554111 122345566666666665555555444555
Q ss_pred CCCCeEecc---------------------------CCCCCCcchhhhcCCCCcEEeccCCCCCCc-CchhhhcCCCCCc
Q 044595 250 VSLQHLDLS---------------------------ESDIEELPGELKALVNLKCLDLEYTGNLIT-IPRQLISNLSRLH 301 (558)
Q Consensus 250 ~~L~~L~l~---------------------------~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~-lp~~~i~~l~~L~ 301 (558)
++|++|+++ ++....+|..+..+++|++|++++|. +.. ....++..+++|+
T Consensus 243 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~ 321 (592)
T 3ogk_B 243 ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLE 321 (592)
T ss_dssp TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCC
T ss_pred hHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCC
Confidence 555555554 33333444445555555555555553 221 1112234555555
Q ss_pred EEEeeccCCCcccccccCCcccCCcchhHHHhccCCCcceEEEEE----------ccchhHHHHhccccccccccceeee
Q 044595 302 VLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGLKSLEVISFTL----------RSSHGLQMILSSDQLRSCTRALSFQ 371 (558)
Q Consensus 302 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~----------~~~~~~~~~~~~~~~~~~L~~L~l~ 371 (558)
+|++..+.. ......-...+++|++|++.. +.......+........+|+.|.+
T Consensus 322 ~L~L~~~~~---------------~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l- 385 (592)
T 3ogk_B 322 VLETRNVIG---------------DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV- 385 (592)
T ss_dssp EEEEEGGGH---------------HHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-
T ss_pred EEeccCccC---------------HHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-
Confidence 555542110 111222224455666666652 111111111111111235666666
Q ss_pred eccCCCcccccchhh-hhhhhhhhhccc---cccceeEeccCCcccccccccccEEEEcCCCC-CCC--chhhh-ccCCC
Q 044595 372 CFNDSTSLEVSALAD-LKQLKMLRIARS---EILEELKMDCAGEVRQFVFHSLNKVEIYGCSK-LKD--LTFLV-FAPNL 443 (558)
Q Consensus 372 ~~~~~~~~~~~~l~~-l~~L~~L~l~~~---~~l~~l~~~~~~~~~~~~~~~L~~L~L~~~~~-l~~--l~~l~-~l~~L 443 (558)
.+..+....+..+.. +++|+.|++.++ ..+...+....-...-..+++|+.|+++.|.. +.+ +..++ .+++|
T Consensus 386 ~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L 465 (592)
T 3ogk_B 386 YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNV 465 (592)
T ss_dssp EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTC
T ss_pred ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccc
Confidence 334444433333433 566666666532 23322111000000011266777777766542 232 22333 36777
Q ss_pred ceEEEecCchhHHHhhcCccCCcccccccCCCCcccceeeccCcccccc--cccCCCCCCCcceEeeecCCCCcCC
Q 044595 444 KSIKVTGSHAMEAIISVGKFAEVPEVMANLNPFAKLQNLEVIGAINLKS--IYWKPLRFPHLKTMSFFHCNKLKML 517 (558)
Q Consensus 444 ~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~--~~~~~~~l~~L~~L~i~~C~~L~~l 517 (558)
+.|++++|..-... +.....++++|++|++++|+ +.. ++.....+++|++|++++|+ ++.-
T Consensus 466 ~~L~L~~n~l~~~~-----------~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~ 528 (592)
T 3ogk_B 466 RWMLLGYVGESDEG-----------LMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMT 528 (592)
T ss_dssp CEEEECSCCSSHHH-----------HHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTT
T ss_pred eEeeccCCCCCHHH-----------HHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHH
Confidence 77777776532211 11234567999999999987 543 22223467999999999997 5543
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.73 E-value=6.4e-17 Score=171.50 Aligned_cols=235 Identities=22% Similarity=0.204 Sum_probs=182.2
Q ss_pred ccceEEEeecccccccCCCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcccCCCCCCCeEeccCC
Q 044595 181 EKARRLSLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHLDLSES 260 (558)
Q Consensus 181 ~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~ 260 (558)
++++.|++++|.++.++. .+++|++|++++|.+..+|. .+++|++|++++|.++.+|. .+.+|++|++++|
T Consensus 61 ~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N 131 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGN 131 (622)
T ss_dssp TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSS
T ss_pred CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCC
Confidence 789999999999988876 67899999999999988886 57899999999999998887 5788999999999
Q ss_pred CCCCcchhhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhccCCCcc
Q 044595 261 DIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGLKSLE 340 (558)
Q Consensus 261 ~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~ 340 (558)
.++.+|.. +++|++|++++| .+..+|. .+++|+.|++.++....+ + ..+++|+
T Consensus 132 ~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~----~~~~L~~L~L~~N~l~~l----------------~---~~~~~L~ 184 (622)
T 3g06_A 132 QLTSLPVL---PPGLQELSVSDN-QLASLPA----LPSELCKLWAYNNQLTSL----------------P---MLPSGLQ 184 (622)
T ss_dssp CCSCCCCC---CTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCSCC----------------C---CCCTTCC
T ss_pred CCCcCCCC---CCCCCEEECcCC-cCCCcCC----ccCCCCEEECCCCCCCCC----------------c---ccCCCCc
Confidence 99988864 488999999988 6777774 357888999887765431 1 3468899
Q ss_pred eEEEEEccchhHHHHhccccccccccceeeeeccCCCcccccchhhhhhhhhhhhccccccceeEeccCCcccccccccc
Q 044595 341 VISFTLRSSHGLQMILSSDQLRSCTRALSFQCFNDSTSLEVSALADLKQLKMLRIARSEILEELKMDCAGEVRQFVFHSL 420 (558)
Q Consensus 341 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L 420 (558)
.|+++.+....++. ...+|+.|.+.++.- ..++ ..+++|+.|+++++ .+..++ . .+++|
T Consensus 185 ~L~Ls~N~l~~l~~------~~~~L~~L~L~~N~l-~~l~----~~~~~L~~L~Ls~N-~L~~lp----~-----~l~~L 243 (622)
T 3g06_A 185 ELSVSDNQLASLPT------LPSELYKLWAYNNRL-TSLP----ALPSGLKELIVSGN-RLTSLP----V-----LPSEL 243 (622)
T ss_dssp EEECCSSCCSCCCC------CCTTCCEEECCSSCC-SSCC----CCCTTCCEEECCSS-CCSCCC----C-----CCTTC
T ss_pred EEECCCCCCCCCCC------ccchhhEEECcCCcc-cccC----CCCCCCCEEEccCC-ccCcCC----C-----CCCcC
Confidence 99988777665432 224788888877543 2222 12478999999887 555544 1 27899
Q ss_pred cEEEEcCCCCCCCchhhhccCCCceEEEecCchhHHHhhcCccCCcccccccCCCCcccceeeccCcc
Q 044595 421 NKVEIYGCSKLKDLTFLVFAPNLKSIKVTGSHAMEAIISVGKFAEVPEVMANLNPFAKLQNLEVIGAI 488 (558)
Q Consensus 421 ~~L~L~~~~~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 488 (558)
+.|+++++ .++.+|. .+++|+.|++++|.. +. ++..+..+++|+.|++++++
T Consensus 244 ~~L~Ls~N-~L~~lp~--~~~~L~~L~Ls~N~L-~~------------lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 244 KELMVSGN-RLTSLPM--LPSGLLSLSVYRNQL-TR------------LPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CEEECCSS-CCSCCCC--CCTTCCEEECCSSCC-CS------------CCGGGGGSCTTCEEECCSCC
T ss_pred cEEECCCC-CCCcCCc--ccccCcEEeCCCCCC-Cc------------CCHHHhhccccCEEEecCCC
Confidence 99999999 7888876 789999999999854 22 23456788999999999875
No 63
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.73 E-value=3e-17 Score=159.99 Aligned_cols=124 Identities=23% Similarity=0.356 Sum_probs=85.7
Q ss_pred CcccceEEEeecccccccCCCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcccCCCCCCCeEecc
Q 044595 179 GWEKARRLSLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHLDLS 258 (558)
Q Consensus 179 ~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~ 258 (558)
.+++++.|++.++.+..++.+..+++|++|++++|.+..+++ +..+++|++|++++|.++.+| .++.+++|++|+++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLT 115 (308)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECT
T ss_pred HcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECC
Confidence 456777777777777776666667777777777777776665 666777777777777777664 46677777777777
Q ss_pred CCCCCCcchhhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccC
Q 044595 259 ESDIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAG 309 (558)
Q Consensus 259 ~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 309 (558)
+|.++.+|. +..+++|++|++++| .+..++. ++.+++|++|++.++.
T Consensus 116 ~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~ 162 (308)
T 1h6u_A 116 STQITDVTP-LAGLSNLQVLYLDLN-QITNISP--LAGLTNLQYLSIGNAQ 162 (308)
T ss_dssp TSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECCSSC
T ss_pred CCCCCCchh-hcCCCCCCEEECCCC-ccCcCcc--ccCCCCccEEEccCCc
Confidence 777776663 667777777777766 4555554 5666677777766553
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.73 E-value=1.5e-17 Score=172.69 Aligned_cols=237 Identities=15% Similarity=0.126 Sum_probs=170.7
Q ss_pred CCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcccCCCCCCCeEeccCCCCCCcchhhhcCCCCcEEe
Q 044595 200 PTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHLDLSESDIEELPGELKALVNLKCLD 279 (558)
Q Consensus 200 ~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~ 279 (558)
..+++|++|++++|.+..+++..+..+++|++|++++|.++..+. ++.+++|++|++++|.++.+|. .++|++|+
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~ 105 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLH 105 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEEE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEEE
Confidence 345688899999988888877778889999999999998886654 8888999999999988887763 37889999
Q ss_pred ccCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhccCCCcceEEEEEccchhHHHHhccc
Q 044595 280 LEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGLKSLEVISFTLRSSHGLQMILSSD 359 (558)
Q Consensus 280 l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~ 359 (558)
+++| .+..++. ..+++|++|++.++.... .....++.+++|+.|+++.+..
T Consensus 106 L~~N-~l~~~~~---~~l~~L~~L~L~~N~l~~---------------~~~~~~~~l~~L~~L~Ls~N~l---------- 156 (487)
T 3oja_A 106 AANN-NISRVSC---SRGQGKKNIYLANNKITM---------------LRDLDEGCRSRVQYLDLKLNEI---------- 156 (487)
T ss_dssp CCSS-CCCCEEE---CCCSSCEEEECCSSCCCS---------------GGGBCGGGGSSEEEEECTTSCC----------
T ss_pred CcCC-cCCCCCc---cccCCCCEEECCCCCCCC---------------CCchhhcCCCCCCEEECCCCCC----------
Confidence 9887 5666664 357888888888776532 1223345566666665543321
Q ss_pred cccccccceeeeeccCCCcccccchh-hhhhhhhhhhccccccceeEeccCCcccccccccccEEEEcCCCCCCCc-hhh
Q 044595 360 QLRSCTRALSFQCFNDSTSLEVSALA-DLKQLKMLRIARSEILEELKMDCAGEVRQFVFHSLNKVEIYGCSKLKDL-TFL 437 (558)
Q Consensus 360 ~~~~~L~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l-~~l 437 (558)
.......+. .+++|+.|+++++ .+..++... .+++|+.|+|+++ .++.+ +.+
T Consensus 157 -----------------~~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~~~~-------~l~~L~~L~Ls~N-~l~~~~~~~ 210 (487)
T 3oja_A 157 -----------------DTVNFAELAASSDTLEHLNLQYN-FIYDVKGQV-------VFAKLKTLDLSSN-KLAFMGPEF 210 (487)
T ss_dssp -----------------CEEEGGGGGGGTTTCCEEECTTS-CCCEEECCC-------CCTTCCEEECCSS-CCCEECGGG
T ss_pred -----------------CCcChHHHhhhCCcccEEecCCC-ccccccccc-------cCCCCCEEECCCC-CCCCCCHhH
Confidence 111122233 6789999999988 455553322 2789999999999 67664 568
Q ss_pred hccCCCceEEEecCchhHHHhhcCccCCcccccccCCCCcccceeeccCcccc-cccccCCCCCCCcceEeee
Q 044595 438 VFAPNLKSIKVTGSHAMEAIISVGKFAEVPEVMANLNPFAKLQNLEVIGAINL-KSIYWKPLRFPHLKTMSFF 509 (558)
Q Consensus 438 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L-~~~~~~~~~l~~L~~L~i~ 509 (558)
+.+++|+.|++++|... .++..+..+++|+.|++++++-. ..++.....++.|+.+.+.
T Consensus 211 ~~l~~L~~L~Ls~N~l~-------------~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 211 QSAAGVTWISLRNNKLV-------------LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp GGGTTCSEEECTTSCCC-------------EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCCCccEEEecCCcCc-------------ccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 88999999999998652 23345678899999999987644 2444445567888888876
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.73 E-value=1.4e-17 Score=160.72 Aligned_cols=201 Identities=23% Similarity=0.343 Sum_probs=159.4
Q ss_pred cccceEEEeecccccccC--CCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCC-Cccc-CcccCCCCCCCeE
Q 044595 180 WEKARRLSLMHNQITNLS--EIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSK-LTSL-PLGISKLVSLQHL 255 (558)
Q Consensus 180 ~~~lr~L~l~~~~~~~l~--~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~l-p~~i~~L~~L~~L 255 (558)
.+++++|+++++.+..++ .+..+++|++|++++|.+..+++..+..+++|++|++++|. ++.+ |..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 478999999999999876 37889999999999999999877778999999999999997 8877 7789999999999
Q ss_pred eccCCCCCCc-chhhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhc
Q 044595 256 DLSESDIEEL-PGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELL 334 (558)
Q Consensus 256 ~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 334 (558)
++++|.+..+ |..+..+++|++|++++| .+..+|...++++++|++|++.++.... .....+.
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~---------------~~~~~~~ 174 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRISS---------------VPERAFR 174 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCE---------------ECTTTTT
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCCcccc---------------cCHHHhc
Confidence 9999999977 556889999999999998 6778887768999999999999886532 1122355
Q ss_pred cCCCcceEEEEEccchhHHHHhccccccccccceeeeeccCCCcccccchhhhhhhhhhhhccccccceeEeccCCcccc
Q 044595 335 GLKSLEVISFTLRSSHGLQMILSSDQLRSCTRALSFQCFNDSTSLEVSALADLKQLKMLRIARSEILEELKMDCAGEVRQ 414 (558)
Q Consensus 335 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~ 414 (558)
.+++|+.|++..+... ......+..+++|+.|+++++ .+..++.....
T Consensus 175 ~l~~L~~L~l~~n~l~---------------------------~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~---- 222 (285)
T 1ozn_A 175 GLHSLDRLLLHQNRVA---------------------------HVHPHAFRDLGRLMTLYLFAN-NLSALPTEALA---- 222 (285)
T ss_dssp TCTTCCEEECCSSCCC---------------------------EECTTTTTTCTTCCEEECCSS-CCSCCCHHHHT----
T ss_pred CccccCEEECCCCccc---------------------------ccCHhHccCcccccEeeCCCC-cCCcCCHHHcc----
Confidence 6777777776543221 111224667788999999887 45555443322
Q ss_pred cccccccEEEEcCCC
Q 044595 415 FVFHSLNKVEIYGCS 429 (558)
Q Consensus 415 ~~~~~L~~L~L~~~~ 429 (558)
.+++|+.|++++++
T Consensus 223 -~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 223 -PLRALQYLRLNDNP 236 (285)
T ss_dssp -TCTTCCEEECCSSC
T ss_pred -cCcccCEEeccCCC
Confidence 27899999999884
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.72 E-value=6.7e-19 Score=172.27 Aligned_cols=154 Identities=15% Similarity=0.157 Sum_probs=109.6
Q ss_pred ccceEEEeecccccccCC-CCCCCCceEEEeecCCccc--cCchhh------hCCCCCcEEEcCCCCCc-ccCccc--CC
Q 044595 181 EKARRLSLMHNQITNLSE-IPTCPHLLTFFLNKNRFQM--IPNDFF------QFMPSLKVLNLSYSKLT-SLPLGI--SK 248 (558)
Q Consensus 181 ~~lr~L~l~~~~~~~l~~-~~~~~~Lr~L~l~~~~~~~--~~~~~~------~~l~~L~~L~l~~~~l~-~lp~~i--~~ 248 (558)
++++.+.+.+|.+ .+|. +.. .|+.|++++|.+.. ++..+. .++++|++|++++|.++ .+|..+ +.
T Consensus 43 ~~L~~l~l~~n~l-~~p~~~~~--~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 119 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADLGQFTD--IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT 119 (312)
T ss_dssp EECTTHHHHCCTT-CCCHHHHH--HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred CCceeEeeccccc-ccHHHHHH--HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence 4566666666766 4332 222 27888888887753 444321 16889999999999888 577776 88
Q ss_pred CCCCCeEeccCCCCCCcchhhhcC-----CCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCccc
Q 044595 249 LVSLQHLDLSESDIEELPGELKAL-----VNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLF 323 (558)
Q Consensus 249 L~~L~~L~l~~~~l~~lp~~i~~l-----~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 323 (558)
+++|++|++++|.++.+|..++.+ ++|++|++++| .+..++...++++++|++|++.++....
T Consensus 120 l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~----------- 187 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRVFPALSTLDLSDNPELG----------- 187 (312)
T ss_dssp SCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCCCCSSCCEEECCSCTTCH-----------
T ss_pred CCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhccCCCCCEEECCCCCcCc-----------
Confidence 999999999999888888778777 89999999988 5667775558889999999998776431
Q ss_pred CCcchhHHHh--ccCCCcceEEEEEccchh
Q 044595 324 GGGEFIVEEL--LGLKSLEVISFTLRSSHG 351 (558)
Q Consensus 324 ~~~~~~~~~L--~~l~~L~~L~l~~~~~~~ 351 (558)
....+..+ +.+++|+.|++..+....
T Consensus 188 --~~~~~~~~~~~~l~~L~~L~L~~N~l~~ 215 (312)
T 1wwl_A 188 --ERGLISALCPLKFPTLQVLALRNAGMET 215 (312)
T ss_dssp --HHHHHHHSCTTSCTTCCEEECTTSCCCC
T ss_pred --chHHHHHHHhccCCCCCEEECCCCcCcc
Confidence 11234444 677888888877665543
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.72 E-value=1.2e-17 Score=163.73 Aligned_cols=264 Identities=16% Similarity=0.124 Sum_probs=187.3
Q ss_pred ceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccC-cccCCCCCCCeEeccCCCCCCcchhhhcCCCCcEEeccCC
Q 044595 205 LLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLP-LGISKLVSLQHLDLSESDIEELPGELKALVNLKCLDLEYT 283 (558)
Q Consensus 205 Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~ 283 (558)
++..++..+.+...+..++..+++|++|++++|.++.++ ..++.+++|++|++++|.+..+++ +..+++|++|++++|
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN 90 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC
Confidence 455566677777777777888899999999999999775 689999999999999999987775 899999999999998
Q ss_pred CCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhccCCCcceEEEEEccchhHHHHhccccccc
Q 044595 284 GNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGLKSLEVISFTLRSSHGLQMILSSDQLRS 363 (558)
Q Consensus 284 ~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 363 (558)
.+..+| ..++|++|++.++...... ...+++|+.|++..+........ ......
T Consensus 91 -~l~~l~-----~~~~L~~L~l~~n~l~~~~------------------~~~~~~L~~L~l~~N~l~~~~~~--~~~~l~ 144 (317)
T 3o53_A 91 -YVQELL-----VGPSIETLHAANNNISRVS------------------CSRGQGKKNIYLANNKITMLRDL--DEGCRS 144 (317)
T ss_dssp -EEEEEE-----ECTTCCEEECCSSCCSEEE------------------ECCCSSCEEEECCSSCCCSGGGB--CTGGGS
T ss_pred -cccccc-----CCCCcCEEECCCCccCCcC------------------ccccCCCCEEECCCCCCCCccch--hhhccC
Confidence 566555 3489999999988664311 12367788888887766554321 111223
Q ss_pred cccceeeeeccCCCcccccch-hhhhhhhhhhhccccccceeEeccCCcccccccccccEEEEcCCCCCCCc-hhhhccC
Q 044595 364 CTRALSFQCFNDSTSLEVSAL-ADLKQLKMLRIARSEILEELKMDCAGEVRQFVFHSLNKVEIYGCSKLKDL-TFLVFAP 441 (558)
Q Consensus 364 ~L~~L~l~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l-~~l~~l~ 441 (558)
.|+.|+++++. +.......+ ..+++|+.|+++++ .+..++... .+++|+.|+++++ .++.+ +.+..++
T Consensus 145 ~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~-------~l~~L~~L~Ls~N-~l~~l~~~~~~l~ 214 (317)
T 3o53_A 145 RVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQV-------VFAKLKTLDLSSN-KLAFMGPEFQSAA 214 (317)
T ss_dssp SEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTS-CCCEEECCC-------CCTTCCEEECCSS-CCCEECGGGGGGT
T ss_pred CCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCC-cCccccccc-------ccccCCEEECCCC-cCCcchhhhcccC
Confidence 67788887643 333333333 35788888888877 455553322 2678888888888 56664 4577788
Q ss_pred CCceEEEecCchhHHHhhcCccCCcccccccCCCCcccceeeccCcccc-cccccCCCCCCCcceEeeecCCCCcCCC
Q 044595 442 NLKSIKVTGSHAMEAIISVGKFAEVPEVMANLNPFAKLQNLEVIGAINL-KSIYWKPLRFPHLKTMSFFHCNKLKMLP 518 (558)
Q Consensus 442 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L-~~~~~~~~~l~~L~~L~i~~C~~L~~lP 518 (558)
+|+.|++++|.. + .++..+..+++|+.|++++++-. ..++.....+++|+.|++.+|+.++..+
T Consensus 215 ~L~~L~L~~N~l-~------------~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~ 279 (317)
T 3o53_A 215 GVTWISLRNNKL-V------------LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN 279 (317)
T ss_dssp TCSEEECTTSCC-C------------EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSS
T ss_pred cccEEECcCCcc-c------------chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCc
Confidence 888888888754 2 22335667788888888876544 3444445567888888888777776543
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.71 E-value=4.6e-18 Score=176.52 Aligned_cols=240 Identities=15% Similarity=0.171 Sum_probs=180.9
Q ss_pred CcccceEEEeecccccccC--CCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcccCCCCCCCeEe
Q 044595 179 GWEKARRLSLMHNQITNLS--EIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHLD 256 (558)
Q Consensus 179 ~~~~lr~L~l~~~~~~~l~--~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~ 256 (558)
.+++++.|++++|.+..++ .+..+++|++|++++|.+...++ +..+++|++|++++|.++.+|.. ++|++|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG----PSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC----TTCCEEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC----CCcCEEE
Confidence 3468999999999999875 57899999999999999987776 88999999999999999987643 8999999
Q ss_pred ccCCCCCCcchhhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhc-c
Q 044595 257 LSESDIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELL-G 335 (558)
Q Consensus 257 l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~ 335 (558)
+++|.+..+|.. .+++|++|++++| .+..+++..++.+++|++|+++++.... ..+..+. .
T Consensus 106 L~~N~l~~~~~~--~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~---------------~~~~~l~~~ 167 (487)
T 3oja_A 106 AANNNISRVSCS--RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDT---------------VNFAELAAS 167 (487)
T ss_dssp CCSSCCCCEEEC--CCSSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECTTSCCCE---------------EEGGGGGGG
T ss_pred CcCCcCCCCCcc--ccCCCCEEECCCC-CCCCCCchhhcCCCCCCEEECCCCCCCC---------------cChHHHhhh
Confidence 999999988753 5789999999998 5666655448899999999999886642 2233443 5
Q ss_pred CCCcceEEEEEccchhHHHHhccccccccccceeeeeccCCCcccccchhhhhhhhhhhhccccccceeEeccCCccccc
Q 044595 336 LKSLEVISFTLRSSHGLQMILSSDQLRSCTRALSFQCFNDSTSLEVSALADLKQLKMLRIARSEILEELKMDCAGEVRQF 415 (558)
Q Consensus 336 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~ 415 (558)
+++|+.|+++.+...+. + ....+++|+.|+++++ .+..+++.+..
T Consensus 168 l~~L~~L~Ls~N~l~~~---------------------------~--~~~~l~~L~~L~Ls~N-~l~~~~~~~~~----- 212 (487)
T 3oja_A 168 SDTLEHLNLQYNFIYDV---------------------------K--GQVVFAKLKTLDLSSN-KLAFMGPEFQS----- 212 (487)
T ss_dssp TTTCCEEECTTSCCCEE---------------------------E--CCCCCTTCCEEECCSS-CCCEECGGGGG-----
T ss_pred CCcccEEecCCCccccc---------------------------c--ccccCCCCCEEECCCC-CCCCCCHhHcC-----
Confidence 67777777654432211 1 1334688889999887 56666655433
Q ss_pred ccccccEEEEcCCCCCCCch-hhhccCCCceEEEecCchhHHHhhcCccCCcccccccCCCCcccceeeccCcccc
Q 044595 416 VFHSLNKVEIYGCSKLKDLT-FLVFAPNLKSIKVTGSHAMEAIISVGKFAEVPEVMANLNPFAKLQNLEVIGAINL 490 (558)
Q Consensus 416 ~~~~L~~L~L~~~~~l~~l~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L 490 (558)
+++|+.|+++++ .+..+| .++.+++|+.|++++|+..... .+..+..++.|+.+.+..+..+
T Consensus 213 -l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~l~c~~-----------~~~~~~~l~~L~~l~~~~~~~~ 275 (487)
T 3oja_A 213 -AAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGT-----------LRDFFSKNQRVQTVAKQTVKKL 275 (487)
T ss_dssp -GTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCBCHHH-----------HHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCCCcCcc-----------hHHHHHhCCCCcEEeccccccc
Confidence 789999999998 666654 4678899999999998765221 1124556788888887644433
No 69
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.71 E-value=3.5e-18 Score=176.90 Aligned_cols=310 Identities=15% Similarity=0.123 Sum_probs=179.9
Q ss_pred CcccceEEEeeccccccc--CCC-CCCC----CceEEEeecCCcccc----CchhhhCCCCCcEEEcCCCCCccc-Ccc-
Q 044595 179 GWEKARRLSLMHNQITNL--SEI-PTCP----HLLTFFLNKNRFQMI----PNDFFQFMPSLKVLNLSYSKLTSL-PLG- 245 (558)
Q Consensus 179 ~~~~lr~L~l~~~~~~~l--~~~-~~~~----~Lr~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~l~~l-p~~- 245 (558)
.++++++|++++|.+.+. ..+ ..++ +|++|++++|.+... ....+..+++|++|++++|.++.. +..
T Consensus 54 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 133 (461)
T 1z7x_W 54 VNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLL 133 (461)
T ss_dssp TCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHH
T ss_pred hCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHH
Confidence 345667777776665441 111 1122 577777777666531 133356667777777777766521 111
Q ss_pred ----cCCCCCCCeEeccCCCCCC-----cchhhhcCCCCcEEeccCCCCCCcCchhhhc-----CCCCCcEEEeeccCCC
Q 044595 246 ----ISKLVSLQHLDLSESDIEE-----LPGELKALVNLKCLDLEYTGNLITIPRQLIS-----NLSRLHVLRMFGAGHN 311 (558)
Q Consensus 246 ----i~~L~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~-----~l~~L~~L~l~~~~~~ 311 (558)
.....+|++|++++|.++. ++..+..+++|++|++++|. +.......+. ..++|++|++.++...
T Consensus 134 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 212 (461)
T 1z7x_W 134 CEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVT 212 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCB
T ss_pred HHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCc
Confidence 1224567777777776653 34555666777777777763 3322111121 3557777777766443
Q ss_pred cccccccCCcccCCcchhHHHhccCCCcceEEEEEccchhH--HHHhccc-cccccccceeeeeccCCCcccc----cch
Q 044595 312 AFDEASKDSSLFGGGEFIVEELLGLKSLEVISFTLRSSHGL--QMILSSD-QLRSCTRALSFQCFNDSTSLEV----SAL 384 (558)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~--~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~----~~l 384 (558)
... .......+..+++|++|++..+..... ..+.... .....|+.|+++++ .+..... ..+
T Consensus 213 ~~~-----------~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l 280 (461)
T 1z7x_W 213 SDN-----------CRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVL 280 (461)
T ss_dssp TTH-----------HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHH
T ss_pred HHH-----------HHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHH
Confidence 100 112466677889999999987765432 2222111 11347899999887 3443221 235
Q ss_pred hhhhhhhhhhhccccccceeEeccCCcccccccccccEEEEcCCCCCCCc------hhhhccCCCceEEEecCchhHHHh
Q 044595 385 ADLKQLKMLRIARSEILEELKMDCAGEVRQFVFHSLNKVEIYGCSKLKDL------TFLVFAPNLKSIKVTGSHAMEAII 458 (558)
Q Consensus 385 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l------~~l~~l~~L~~L~l~~c~~l~~~~ 458 (558)
..+++|++|+++++. +...+.......-....++|++|++++| .++.. ..+..+++|+.|++++|..-...+
T Consensus 281 ~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 358 (461)
T 1z7x_W 281 RAKESLKELSLAGNE-LGDEGARLLCETLLEPGCQLESLWVKSC-SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV 358 (461)
T ss_dssp HHCTTCCEEECTTCC-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHH
T ss_pred hhCCCcceEECCCCC-CchHHHHHHHHHhccCCccceeeEcCCC-CCchHHHHHHHHHHhhCCCccEEEccCCccccccH
Confidence 568899999998873 3322111110000011369999999999 56543 245678999999999996433221
Q ss_pred hcCccCCcccccccCC-CCcccceeeccCccccc-----ccccCCCCCCCcceEeeecCC
Q 044595 459 SVGKFAEVPEVMANLN-PFAKLQNLEVIGAINLK-----SIYWKPLRFPHLKTMSFFHCN 512 (558)
Q Consensus 459 ~~~~~~~~~~~~~~~~-~~~~L~~L~l~~c~~L~-----~~~~~~~~l~~L~~L~i~~C~ 512 (558)
. .+...+. ..++|++|++++|. +. .++.....+++|++|++++|+
T Consensus 359 ~--------~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 359 R--------ELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp H--------HHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred H--------HHHHHHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 1 1111222 26899999999984 55 455444568999999999984
No 70
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.70 E-value=1.6e-16 Score=153.36 Aligned_cols=131 Identities=22% Similarity=0.259 Sum_probs=110.9
Q ss_pred CCcccceEEEeecccccccCCCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcccCCCCCCCeEec
Q 044595 178 TGWEKARRLSLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHLDL 257 (558)
Q Consensus 178 ~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l 257 (558)
..+++++.+++.++.++.+|.- -.+.++.|++++|.+..+++..+..+++|++|++++|.++.+|.. +.+++|++|++
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~-~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~L 84 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPD-LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDL 84 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSC-CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEEC
T ss_pred cccCCccEEECCCCCCCcCCCC-CCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEEC
Confidence 4457788899999888887642 136899999999999988877789999999999999999988664 78999999999
Q ss_pred cCCCCCCcchhhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCC
Q 044595 258 SESDIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHN 311 (558)
Q Consensus 258 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 311 (558)
++|.++.+|..+..+++|++|++++| .+..+|...++.+++|++|++.++...
T Consensus 85 s~N~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~ 137 (290)
T 1p9a_G 85 SHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELK 137 (290)
T ss_dssp CSSCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCC
T ss_pred CCCcCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCC
Confidence 99999999988899999999999988 677888766888999999999877543
No 71
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.70 E-value=2.7e-17 Score=157.49 Aligned_cols=127 Identities=25% Similarity=0.391 Sum_probs=66.7
Q ss_pred CcccceEEEeecccccccCCCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcc-cCCCCCCCeEec
Q 044595 179 GWEKARRLSLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLG-ISKLVSLQHLDL 257 (558)
Q Consensus 179 ~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l 257 (558)
.+++++.|.+.++.+..++.+..+++|++|++++|.+..++ .+..+++|++|++++|.++.+|.. ++.+++|++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 34455555555555555555555555555555555555443 145555555555555555544332 455555555555
Q ss_pred cCCCCCCcchh-hhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeecc
Q 044595 258 SESDIEELPGE-LKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGA 308 (558)
Q Consensus 258 ~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~ 308 (558)
++|.++.+|.. ++.+++|++|++++| .+..+|...++.+++|++|++.++
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n 167 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYN 167 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCC
Confidence 55555554433 455555555555555 444444443445555555555443
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.70 E-value=3e-16 Score=149.98 Aligned_cols=127 Identities=23% Similarity=0.379 Sum_probs=90.5
Q ss_pred cceEEEeecccccccCCCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcc-cCCCCCCCeEeccCC
Q 044595 182 KARRLSLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLG-ISKLVSLQHLDLSES 260 (558)
Q Consensus 182 ~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~ 260 (558)
..+.++++++.++.+|.. -.++++.|++++|.+..++...+..+++|++|++++|.++.+|.. +.++++|++|++++|
T Consensus 17 ~~~~l~~~~~~l~~ip~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSN-IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTTEEECTTSCCSSCCSC-CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCCEEEccCCCCCccCCC-CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 345677777777766541 125678888888888777776677788888888888877777654 367788888888888
Q ss_pred CCCCcchh-hhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCC
Q 044595 261 DIEELPGE-LKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGH 310 (558)
Q Consensus 261 ~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 310 (558)
.+..+|.. +..+++|++|++++| .+..+|...++.+++|++|++.++..
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l 145 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYNEL 145 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cCCcCCHhHcccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCCCcC
Confidence 77777654 567778888888776 56666665567777777777776643
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.70 E-value=3.3e-16 Score=150.26 Aligned_cols=200 Identities=20% Similarity=0.185 Sum_probs=101.7
Q ss_pred CceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCc-ccCCCCCCCeEeccCCCCCCcc-hhhhcCCCCcEEecc
Q 044595 204 HLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPL-GISKLVSLQHLDLSESDIEELP-GELKALVNLKCLDLE 281 (558)
Q Consensus 204 ~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~ 281 (558)
++++|++++|.+..++...+..+++|++|++++|.++.++. .++++++|++|++++|.++.++ ..+..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45555555555555554445555555555555555554432 4555555555555555555443 335555555555555
Q ss_pred CCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhccCCCcceEEEEEccchhHHHHhccccc
Q 044595 282 YTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGLKSLEVISFTLRSSHGLQMILSSDQL 361 (558)
Q Consensus 282 ~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 361 (558)
+| .+..++...++++++|++|++.++.... ...+..++.+++|+.|++..+....
T Consensus 109 ~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~--------------~~l~~~~~~l~~L~~L~Ls~N~l~~---------- 163 (276)
T 2z62_A 109 ET-NLASLENFPIGHLKTLKELNVAHNLIQS--------------FKLPEYFSNLTNLEHLDLSSNKIQS---------- 163 (276)
T ss_dssp TS-CCCCSTTCCCTTCTTCCEEECCSSCCCC--------------CCCCGGGGGCTTCCEEECCSSCCCE----------
T ss_pred CC-CccccCchhcccCCCCCEEECcCCccce--------------ecCchhhccCCCCCEEECCCCCCCc----------
Confidence 54 3334433224555555555555443321 0112334444444444443222111
Q ss_pred cccccceeeeeccCCCcccccchhhhhhhh----hhhhccccccceeEeccCCcccccccccccEEEEcCCCCCCCchh-
Q 044595 362 RSCTRALSFQCFNDSTSLEVSALADLKQLK----MLRIARSEILEELKMDCAGEVRQFVFHSLNKVEIYGCSKLKDLTF- 436 (558)
Q Consensus 362 ~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~----~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~- 436 (558)
.....+..+++|+ .|+++++ .+..++..... ..+|++|+++++ .++.++.
T Consensus 164 -----------------~~~~~~~~l~~L~~l~l~L~ls~n-~l~~~~~~~~~------~~~L~~L~L~~n-~l~~~~~~ 218 (276)
T 2z62_A 164 -----------------IYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFK------EIRLKELALDTN-QLKSVPDG 218 (276)
T ss_dssp -----------------ECGGGGHHHHTCTTCCEEEECCSS-CCCEECTTSSC------SCCEEEEECCSS-CCSCCCTT
T ss_pred -----------------CCHHHhhhhhhccccceeeecCCC-cccccCccccC------CCcccEEECCCC-ceeecCHh
Confidence 0111133333444 4556555 44444444333 347888888888 5666543
Q ss_pred -hhccCCCceEEEecCch
Q 044595 437 -LVFAPNLKSIKVTGSHA 453 (558)
Q Consensus 437 -l~~l~~L~~L~l~~c~~ 453 (558)
++.+++|+.|++++|+.
T Consensus 219 ~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 219 IFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp TTTTCCSCCEEECCSSCB
T ss_pred HhcccccccEEEccCCcc
Confidence 56788888888887654
No 74
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.69 E-value=1.1e-16 Score=150.08 Aligned_cols=103 Identities=21% Similarity=0.355 Sum_probs=65.4
Q ss_pred CCceEEEeecCCccccCchhhhCCCCCcEEEcCCCC-CcccCc-ccCCCCCCCeEeccC-CCCCCcch-hhhcCCCCcEE
Q 044595 203 PHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSK-LTSLPL-GISKLVSLQHLDLSE-SDIEELPG-ELKALVNLKCL 278 (558)
Q Consensus 203 ~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~lp~-~i~~L~~L~~L~l~~-~~l~~lp~-~i~~l~~L~~L 278 (558)
+++++|++++|.+..+++..+..+++|++|++++|. ++.+|. .++++++|++|++++ +.++.+|. .+..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 356666666666666666556666677777777664 666543 566666777777766 66666653 35666667777
Q ss_pred eccCCCCCCcCchhhhcCCCCCc---EEEeecc
Q 044595 279 DLEYTGNLITIPRQLISNLSRLH---VLRMFGA 308 (558)
Q Consensus 279 ~l~~~~~l~~lp~~~i~~l~~L~---~L~l~~~ 308 (558)
++++| .+..+|. ++.+++|+ +|++.++
T Consensus 111 ~l~~n-~l~~lp~--~~~l~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 111 GIFNT-GLKMFPD--LTKVYSTDIFFILEITDN 140 (239)
T ss_dssp EEEEE-CCCSCCC--CTTCCBCCSEEEEEEESC
T ss_pred eCCCC-CCccccc--cccccccccccEEECCCC
Confidence 77666 4555664 55666666 6666655
No 75
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.69 E-value=1.4e-16 Score=155.29 Aligned_cols=193 Identities=21% Similarity=0.301 Sum_probs=135.6
Q ss_pred CCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcccCCCCCCCeEeccCCCCCCcchhhhcCCCCcEE
Q 044595 199 IPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHLDLSESDIEELPGELKALVNLKCL 278 (558)
Q Consensus 199 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L 278 (558)
...+++|+.|++.++.+..++. +..+++|++|++++|.++.++. ++.+++|++|++++|.++.+| .+..+++|++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~~--~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L 112 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTL 112 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEE
T ss_pred HHHcCCcCEEEeeCCCccCchh--hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEE
Confidence 4457789999999999988873 7889999999999999998877 889999999999999998886 68889999999
Q ss_pred eccCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhccCCCcceEEEEEccchhHHHHhcc
Q 044595 279 DLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGLKSLEVISFTLRSSHGLQMILSS 358 (558)
Q Consensus 279 ~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~ 358 (558)
++++| .+..++. ++.+++|++|++.++.... +..+..+++|+.|++..+..
T Consensus 113 ~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~-----------------~~~l~~l~~L~~L~l~~n~l--------- 163 (308)
T 1h6u_A 113 DLTST-QITDVTP--LAGLSNLQVLYLDLNQITN-----------------ISPLAGLTNLQYLSIGNAQV--------- 163 (308)
T ss_dssp ECTTS-CCCCCGG--GTTCTTCCEEECCSSCCCC-----------------CGGGGGCTTCCEEECCSSCC---------
T ss_pred ECCCC-CCCCchh--hcCCCCCCEEECCCCccCc-----------------CccccCCCCccEEEccCCcC---------
Confidence 99988 5777775 7899999999998775532 11155566666555543221
Q ss_pred ccccccccceeeeeccCCCcccccchhhhhhhhhhhhccccccceeEeccCCcccccccccccEEEEcCCCCCCCchhhh
Q 044595 359 DQLRSCTRALSFQCFNDSTSLEVSALADLKQLKMLRIARSEILEELKMDCAGEVRQFVFHSLNKVEIYGCSKLKDLTFLV 438 (558)
Q Consensus 359 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~l~ 438 (558)
...+ .+..+++|+.|+++++ .+..++. . ..+++|+.|++++| .+..++.+.
T Consensus 164 ------------------~~~~--~l~~l~~L~~L~l~~n-~l~~~~~-l------~~l~~L~~L~L~~N-~l~~~~~l~ 214 (308)
T 1h6u_A 164 ------------------SDLT--PLANLSKLTTLKADDN-KISDISP-L------ASLPNLIEVHLKNN-QISDVSPLA 214 (308)
T ss_dssp ------------------CCCG--GGTTCTTCCEEECCSS-CCCCCGG-G------GGCTTCCEEECTTS-CCCBCGGGT
T ss_pred ------------------CCCh--hhcCCCCCCEEECCCC-ccCcChh-h------cCCCCCCEEEccCC-ccCcccccc
Confidence 1111 1445566666666665 3333322 1 12566777777666 555555566
Q ss_pred ccCCCceEEEecCch
Q 044595 439 FAPNLKSIKVTGSHA 453 (558)
Q Consensus 439 ~l~~L~~L~l~~c~~ 453 (558)
.+++|+.|++++|+.
T Consensus 215 ~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 215 NTSNLFIVTLTNQTI 229 (308)
T ss_dssp TCTTCCEEEEEEEEE
T ss_pred CCCCCCEEEccCCee
Confidence 666666666666553
No 76
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.67 E-value=4.9e-17 Score=173.87 Aligned_cols=320 Identities=14% Similarity=0.110 Sum_probs=195.8
Q ss_pred cceEEEeecccccc---cCC-CCCCCCceEEEeecCCccccC----chhhhCCCCCcEEEcCCCCCc-----ccCcccCC
Q 044595 182 KARRLSLMHNQITN---LSE-IPTCPHLLTFFLNKNRFQMIP----NDFFQFMPSLKVLNLSYSKLT-----SLPLGISK 248 (558)
Q Consensus 182 ~lr~L~l~~~~~~~---l~~-~~~~~~Lr~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~l~-----~lp~~i~~ 248 (558)
++++|++.++.... +.. ...+++|++|++++|.+.... ..+...+++|++|+++++.++ .++..+.+
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~ 218 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARN 218 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHH
T ss_pred cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhh
Confidence 37888887665211 111 236788899999888765432 234567888999999888775 34555667
Q ss_pred CCCCCeEeccCCCCCCcchhhhcCCCCcEEeccCCCCC--------------------------CcCchhhhcCCCCCcE
Q 044595 249 LVSLQHLDLSESDIEELPGELKALVNLKCLDLEYTGNL--------------------------ITIPRQLISNLSRLHV 302 (558)
Q Consensus 249 L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l--------------------------~~lp~~~i~~l~~L~~ 302 (558)
+++|++|++++|.+..+|..+..+++|++|+++++... ..+|.. +..+++|++
T Consensus 219 ~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~ 297 (592)
T 3ogk_B 219 CRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPIL-FPFAAQIRK 297 (592)
T ss_dssp CTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGG-GGGGGGCCE
T ss_pred CCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHH-HhhcCCCcE
Confidence 88999999999888888888888888888888643211 112221 344555555
Q ss_pred EEeeccCCCcccccccCCcccCCcchhHHHhccCCCcceEEEEEccchhHHHHhccccccccccceeeee----------
Q 044595 303 LRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGLKSLEVISFTLRSSHGLQMILSSDQLRSCTRALSFQC---------- 372 (558)
Q Consensus 303 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~---------- 372 (558)
|++.+|... .......+..+++|+.|.+. .... ...+.......++|+.|++.+
T Consensus 298 L~Ls~~~l~--------------~~~~~~~~~~~~~L~~L~L~-~~~~-~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~ 361 (592)
T 3ogk_B 298 LDLLYALLE--------------TEDHCTLIQKCPNLEVLETR-NVIG-DRGLEVLAQYCKQLKRLRIERGADEQGMEDE 361 (592)
T ss_dssp EEETTCCCC--------------HHHHHHHHTTCTTCCEEEEE-GGGH-HHHHHHHHHHCTTCCEEEEECCCCSSTTSST
T ss_pred EecCCCcCC--------------HHHHHHHHHhCcCCCEEecc-CccC-HHHHHHHHHhCCCCCEEEeecCccccccccc
Confidence 555554421 22233456788999999888 3222 222222222234799999985
Q ss_pred ccCCCcccccch-hhhhhhhhhhhccccccceeEeccCCcccccccccccEEEEcC---CCCCCCch-------hhhccC
Q 044595 373 FNDSTSLEVSAL-ADLKQLKMLRIARSEILEELKMDCAGEVRQFVFHSLNKVEIYG---CSKLKDLT-------FLVFAP 441 (558)
Q Consensus 373 ~~~~~~~~~~~l-~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~---~~~l~~l~-------~l~~l~ 441 (558)
|..+....+..+ ..+++|++|.+. |..+......... ..+++|+.|++++ |..+++.| .+..++
T Consensus 362 ~~~~~~~~~~~l~~~~~~L~~L~l~-~~~l~~~~~~~l~----~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~ 436 (592)
T 3ogk_B 362 EGLVSQRGLIALAQGCQELEYMAVY-VSDITNESLESIG----TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCK 436 (592)
T ss_dssp TCCCCHHHHHHHHHHCTTCSEEEEE-ESCCCHHHHHHHH----HHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCT
T ss_pred cCccCHHHHHHHHhhCccCeEEEee-cCCccHHHHHHHH----hhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCC
Confidence 666665443332 457889999884 3343321111110 1378999999984 55666532 245799
Q ss_pred CCceEEEecCch-hHHHhhcCccCCcccccccCCCCcccceeeccCcccccc--cccCCCCCCCcceEeeecCCCCcC--
Q 044595 442 NLKSIKVTGSHA-MEAIISVGKFAEVPEVMANLNPFAKLQNLEVIGAINLKS--IYWKPLRFPHLKTMSFFHCNKLKM-- 516 (558)
Q Consensus 442 ~L~~L~l~~c~~-l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~--~~~~~~~l~~L~~L~i~~C~~L~~-- 516 (558)
+|++|++++|.. +.... .......+++|++|++++|. +.. ++.....+++|++|++++|+ +..
T Consensus 437 ~L~~L~L~~~~~~l~~~~----------~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~ 504 (592)
T 3ogk_B 437 KLRRFAFYLRQGGLTDLG----------LSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERA 504 (592)
T ss_dssp TCCEEEEECCGGGCCHHH----------HHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHH
T ss_pred CCCEEEEecCCCCccHHH----------HHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHH
Confidence 999999988764 22110 00112347899999999875 443 22233567999999999998 542
Q ss_pred CCCCC-CcccccceeEecch
Q 044595 517 LPLDS-NSAREHSIVIRGDR 535 (558)
Q Consensus 517 lP~~~-~~~~~~~~~i~~~~ 535 (558)
+|... ....++...+.+|.
T Consensus 505 ~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 505 IAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHHHHHCSSCCEEEEESCB
T ss_pred HHHHHHhcCccCeeECcCCc
Confidence 22211 12345566666654
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.67 E-value=7.4e-16 Score=147.28 Aligned_cols=196 Identities=22% Similarity=0.293 Sum_probs=132.2
Q ss_pred CceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCc-ccCCCCCCCeEeccCCCCCCcchhh-hcCCCCcEEecc
Q 044595 204 HLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPL-GISKLVSLQHLDLSESDIEELPGEL-KALVNLKCLDLE 281 (558)
Q Consensus 204 ~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~l~ 281 (558)
..++++++++.++.+|..+ ..+|+.|++++|.++.+|. .++++++|++|++++|.++.+|..+ ..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 4678999999999988763 3689999999999998865 7899999999999999999888764 789999999999
Q ss_pred CCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhccCCCcceEEEEEccchhHHHHhccccc
Q 044595 282 YTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGLKSLEVISFTLRSSHGLQMILSSDQL 361 (558)
Q Consensus 282 ~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 361 (558)
+| .+..+|...+..+++|++|++.++..... ....++.+++|+.|++..+..
T Consensus 94 ~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------~~~~~~~l~~L~~L~Ls~n~l------------ 145 (270)
T 2o6q_A 94 DN-KLQALPIGVFDQLVNLAELRLDRNQLKSL---------------PPRVFDSLTKLTYLSLGYNEL------------ 145 (270)
T ss_dssp SS-CCCCCCTTTTTTCSSCCEEECCSSCCCCC---------------CTTTTTTCTTCCEEECCSSCC------------
T ss_pred CC-cCCcCCHhHcccccCCCEEECCCCccCee---------------CHHHhCcCcCCCEEECCCCcC------------
Confidence 98 67788877678999999999987755321 122244555555555443211
Q ss_pred cccccceeeeeccCCCcccccchhhhhhhhhhhhccccccceeEeccCCcccccccccccEEEEcCCCCCCCchh--hhc
Q 044595 362 RSCTRALSFQCFNDSTSLEVSALADLKQLKMLRIARSEILEELKMDCAGEVRQFVFHSLNKVEIYGCSKLKDLTF--LVF 439 (558)
Q Consensus 362 ~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~--l~~ 439 (558)
...+...+..+++|+.|+++++ .+..++..... .+++|+.|+++++ .++.++. +..
T Consensus 146 ---------------~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-----~l~~L~~L~L~~N-~l~~~~~~~~~~ 203 (270)
T 2o6q_A 146 ---------------QSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAFD-----KLTELKTLKLDNN-QLKRVPEGAFDS 203 (270)
T ss_dssp ---------------CCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTT-----TCTTCCEEECCSS-CCSCCCTTTTTT
T ss_pred ---------------CccCHhHccCCcccceeEecCC-cCcEeChhHhc-----cCCCcCEEECCCC-cCCcCCHHHhcc
Confidence 1111122445566666666655 34444333222 1566666666666 4544432 455
Q ss_pred cCCCceEEEecCc
Q 044595 440 APNLKSIKVTGSH 452 (558)
Q Consensus 440 l~~L~~L~l~~c~ 452 (558)
+++|+.|++++|+
T Consensus 204 l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 204 LEKLKMLQLQENP 216 (270)
T ss_dssp CTTCCEEECCSSC
T ss_pred ccCCCEEEecCCC
Confidence 6666666666554
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.66 E-value=3.7e-16 Score=146.50 Aligned_cols=93 Identities=25% Similarity=0.407 Sum_probs=63.2
Q ss_pred CccccCchhhhCCCCCcEEEcCCCCCcccCc-ccCCCCCCCeEeccCCC-CCCcch-hhhcCCCCcEEeccCCCCCCcCc
Q 044595 214 RFQMIPNDFFQFMPSLKVLNLSYSKLTSLPL-GISKLVSLQHLDLSESD-IEELPG-ELKALVNLKCLDLEYTGNLITIP 290 (558)
Q Consensus 214 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~-l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp 290 (558)
.++.+|. + ..+|++|++++|.++.+|. .++++++|++|++++|. ++.+|. .+..+++|++|++++|+.+..+|
T Consensus 22 ~l~~ip~--~--~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 22 DIQRIPS--L--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp SCSSCCC--C--CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred CccccCC--C--CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence 3555555 2 2367777777777776655 56777777777777775 776665 46677777777777634666776
Q ss_pred hhhhcCCCCCcEEEeeccCC
Q 044595 291 RQLISNLSRLHVLRMFGAGH 310 (558)
Q Consensus 291 ~~~i~~l~~L~~L~l~~~~~ 310 (558)
...+..+++|++|++.++..
T Consensus 98 ~~~f~~l~~L~~L~l~~n~l 117 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNTGL 117 (239)
T ss_dssp TTSEECCTTCCEEEEEEECC
T ss_pred HHHhCCCCCCCEEeCCCCCC
Confidence 65567777777777776644
No 79
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.65 E-value=1.1e-16 Score=158.41 Aligned_cols=230 Identities=17% Similarity=0.168 Sum_probs=116.9
Q ss_pred CCCcEEEcCCCCCcccCcccCCCCCCCeEeccCCCCCC--cchhhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEE
Q 044595 227 PSLKVLNLSYSKLTSLPLGISKLVSLQHLDLSESDIEE--LPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLR 304 (558)
Q Consensus 227 ~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~ 304 (558)
.++++|+++++.+...+..+..+++|++|++++|.+.. +|..+..+++|++|++++|......|.. ++++++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHH-HhcCCCCCEEE
Confidence 55666666666555554445556666666666665542 5555566666666666665322233333 55566666666
Q ss_pred eeccCCCcccccccCCcccCCcchhHHHhccCCCcceEEEEEc-cchhHHHHhccccccccccceeeeeccCCCcccccc
Q 044595 305 MFGAGHNAFDEASKDSSLFGGGEFIVEELLGLKSLEVISFTLR-SSHGLQMILSSDQLRSCTRALSFQCFNDSTSLEVSA 383 (558)
Q Consensus 305 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 383 (558)
+.+|.... .......+..+++|++|++..+ ..... .+ ...
T Consensus 149 L~~~~~l~-------------~~~l~~~~~~~~~L~~L~l~~~~~l~~~-~~-------------------------~~~ 189 (336)
T 2ast_B 149 LSGCSGFS-------------EFALQTLLSSCSRLDELNLSWCFDFTEK-HV-------------------------QVA 189 (336)
T ss_dssp CTTCBSCC-------------HHHHHHHHHHCTTCCEEECCCCTTCCHH-HH-------------------------HHH
T ss_pred CCCCCCCC-------------HHHHHHHHhcCCCCCEEcCCCCCCcChH-HH-------------------------HHH
Confidence 66553211 1123333445555555554433 22110 00 001
Q ss_pred hhhhh-hhhhhhhcccc-ccc--eeEeccCCcccccccccccEEEEcCCCCCCC--chhhhccCCCceEEEecCchhHHH
Q 044595 384 LADLK-QLKMLRIARSE-ILE--ELKMDCAGEVRQFVFHSLNKVEIYGCSKLKD--LTFLVFAPNLKSIKVTGSHAMEAI 457 (558)
Q Consensus 384 l~~l~-~L~~L~l~~~~-~l~--~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~--l~~l~~l~~L~~L~l~~c~~l~~~ 457 (558)
+..++ +|++|++++|. .+. .++... ..+++|+.|++++|..+++ ++.++.+++|++|++++|..+...
T Consensus 190 ~~~l~~~L~~L~l~~~~~~~~~~~l~~~~------~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 263 (336)
T 2ast_B 190 VAHVSETITQLNLSGYRKNLQKSDLSTLV------RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE 263 (336)
T ss_dssp HHHSCTTCCEEECCSCGGGSCHHHHHHHH------HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGG
T ss_pred HHhcccCCCEEEeCCCcccCCHHHHHHHH------hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHH
Confidence 23344 55555555542 111 111111 1267788888887754543 556777888888888887632221
Q ss_pred hhcCccCCcccccccCCCCcccceeeccCcccccccccCCCCC-CCcceEeeecCCCCcCCC
Q 044595 458 ISVGKFAEVPEVMANLNPFAKLQNLEVIGAINLKSIYWKPLRF-PHLKTMSFFHCNKLKMLP 518 (558)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~l-~~L~~L~i~~C~~L~~lP 518 (558)
....+..+++|++|++++| +..-.. ..+ .+|+.|++ +|++++...
T Consensus 264 -----------~~~~l~~~~~L~~L~l~~~--i~~~~~--~~l~~~l~~L~l-~~n~l~~~~ 309 (336)
T 2ast_B 264 -----------TLLELGEIPTLKTLQVFGI--VPDGTL--QLLKEALPHLQI-NCSHFTTIA 309 (336)
T ss_dssp -----------GGGGGGGCTTCCEEECTTS--SCTTCH--HHHHHHSTTSEE-SCCCSCCTT
T ss_pred -----------HHHHHhcCCCCCEEeccCc--cCHHHH--HHHHhhCcceEE-ecccCcccc
Confidence 1123456788888888887 222111 111 23555556 456666543
No 80
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.65 E-value=3e-17 Score=169.85 Aligned_cols=312 Identities=16% Similarity=0.182 Sum_probs=152.5
Q ss_pred ccceEEEeecccccccC--C-CCCCCCceEEEeecCCccc-----cCchhhhCCCCCcEEEcCCCCCccc-Cccc-CCCC
Q 044595 181 EKARRLSLMHNQITNLS--E-IPTCPHLLTFFLNKNRFQM-----IPNDFFQFMPSLKVLNLSYSKLTSL-PLGI-SKLV 250 (558)
Q Consensus 181 ~~lr~L~l~~~~~~~l~--~-~~~~~~Lr~L~l~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i-~~L~ 250 (558)
++++.|+++++.+.... . +..+++|++|++++|.+.. ++. .+..+++|++|++++|.++.. +..+ ..+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISS-ALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHH-HHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHH-HHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 45666677666655432 1 3456667777777666652 222 255567777777777766531 2222 2233
Q ss_pred ----CCCeEeccCCCCC-----CcchhhhcCCCCcEEeccCCCCCCcC-ch----hhhcCCCCCcEEEeeccCCCccccc
Q 044595 251 ----SLQHLDLSESDIE-----ELPGELKALVNLKCLDLEYTGNLITI-PR----QLISNLSRLHVLRMFGAGHNAFDEA 316 (558)
Q Consensus 251 ----~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~l~~l-p~----~~i~~l~~L~~L~l~~~~~~~~~~~ 316 (558)
+|++|++++|.+. .+|..+..+++|++|++++|. +... +. ......++|++|++.+|......
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~-- 158 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS-- 158 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG--
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH--
Confidence 5777777777665 345566667777777777663 3221 11 11122456777777666442100
Q ss_pred ccCCcccCCcchhHHHhccCCCcceEEEEEccchhH--HHHhcccc-ccccccceeeeeccCCCccc----ccchhhhhh
Q 044595 317 SKDSSLFGGGEFIVEELLGLKSLEVISFTLRSSHGL--QMILSSDQ-LRSCTRALSFQCFNDSTSLE----VSALADLKQ 389 (558)
Q Consensus 317 ~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~--~~~~~~~~-~~~~L~~L~l~~~~~~~~~~----~~~l~~l~~ 389 (558)
.......+..+++|+.|++..+..... ..+..... ....|+.|+++++.-. ... ...+..+++
T Consensus 159 ---------~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~-~~~~~~l~~~l~~~~~ 228 (461)
T 1z7x_W 159 ---------CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVT-SDNCRDLCGIVASKAS 228 (461)
T ss_dssp ---------HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCB-TTHHHHHHHHHHHCTT
T ss_pred ---------HHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCc-HHHHHHHHHHHHhCCC
Confidence 112344555566677666665554321 11111110 1125666666655322 111 112344566
Q ss_pred hhhhhhccccccceeE-----eccCCcccccccccccEEEEcCCCCCCC-----c-hhhhccCCCceEEEecCchhHHHh
Q 044595 390 LKMLRIARSEILEELK-----MDCAGEVRQFVFHSLNKVEIYGCSKLKD-----L-TFLVFAPNLKSIKVTGSHAMEAII 458 (558)
Q Consensus 390 L~~L~l~~~~~l~~l~-----~~~~~~~~~~~~~~L~~L~L~~~~~l~~-----l-~~l~~l~~L~~L~l~~c~~l~~~~ 458 (558)
|++|+++++. +.... ..... .+++|++|++++| .+++ + ..+..+++|++|++++|..-...+
T Consensus 229 L~~L~Ls~n~-l~~~~~~~l~~~~~~-----~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 301 (461)
T 1z7x_W 229 LRELALGSNK-LGDVGMAELCPGLLH-----PSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301 (461)
T ss_dssp CCEEECCSSB-CHHHHHHHHHHHHTS-----TTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH
T ss_pred ccEEeccCCc-CChHHHHHHHHHHhc-----CCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH
Confidence 6666666652 22211 11110 1456666666666 4444 1 123445666666666554321110
Q ss_pred h----c-----CccCCc------------ccccccCCCCcccceeeccCcccccccccC------CCCCCCcceEeeecC
Q 044595 459 S----V-----GKFAEV------------PEVMANLNPFAKLQNLEVIGAINLKSIYWK------PLRFPHLKTMSFFHC 511 (558)
Q Consensus 459 ~----~-----~~~~~~------------~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~------~~~l~~L~~L~i~~C 511 (558)
. . ..+..+ ..++..+..+++|++|+++++ .+...... ....++|++|++++|
T Consensus 302 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 380 (461)
T 1z7x_W 302 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC 380 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC
Confidence 0 0 000000 012223344577888888776 34433211 012578888888887
Q ss_pred CCCc
Q 044595 512 NKLK 515 (558)
Q Consensus 512 ~~L~ 515 (558)
+++
T Consensus 381 -~i~ 383 (461)
T 1z7x_W 381 -DVS 383 (461)
T ss_dssp -CCC
T ss_pred -CCC
Confidence 455
No 81
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.65 E-value=5.1e-17 Score=160.77 Aligned_cols=219 Identities=16% Similarity=0.149 Sum_probs=135.6
Q ss_pred ceEEEeecccccccCCCCCC--CCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcc--cCcccCCCCCCCeEecc
Q 044595 183 ARRLSLMHNQITNLSEIPTC--PHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTS--LPLGISKLVSLQHLDLS 258 (558)
Q Consensus 183 lr~L~l~~~~~~~l~~~~~~--~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~l~ 258 (558)
.++++++++.+.. ..+..+ ++++.|++.+|.+...++. +..+++|++|++++|.++. +|..+..+++|++|+++
T Consensus 49 ~~~l~l~~~~~~~-~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~ 126 (336)
T 2ast_B 49 WQTLDLTGKNLHP-DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126 (336)
T ss_dssp SSEEECTTCBCCH-HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred heeeccccccCCH-HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence 4456666555432 112233 5677888888777766665 4467888888888887763 67777788888888888
Q ss_pred CCCCC-CcchhhhcCCCCcEEeccCCCCCCc--CchhhhcCCCCCcEEEeecc-CCCcccccccCCcccCCcchhHHHhc
Q 044595 259 ESDIE-ELPGELKALVNLKCLDLEYTGNLIT--IPRQLISNLSRLHVLRMFGA-GHNAFDEASKDSSLFGGGEFIVEELL 334 (558)
Q Consensus 259 ~~~l~-~lp~~i~~l~~L~~L~l~~~~~l~~--lp~~~i~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~ 334 (558)
+|.+. ..|..++.+++|++|++++|..+.. ++.. ++++++|++|++.+| ... .......+.
T Consensus 127 ~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~--------------~~~~~~~~~ 191 (336)
T 2ast_B 127 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWCFDFT--------------EKHVQVAVA 191 (336)
T ss_dssp TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCC--------------HHHHHHHHH
T ss_pred CcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcC--------------hHHHHHHHH
Confidence 88776 5666777888888888888755553 4443 677888888888877 332 222455567
Q ss_pred cCC-CcceEEEEEccc----hhHHHHhccccccccccceeeeeccCCCcccccchhhhhhhhhhhhccccccceeEeccC
Q 044595 335 GLK-SLEVISFTLRSS----HGLQMILSSDQLRSCTRALSFQCFNDSTSLEVSALADLKQLKMLRIARSEILEELKMDCA 409 (558)
Q Consensus 335 ~l~-~L~~L~l~~~~~----~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~ 409 (558)
.++ +|++|++..+.. ..++. .+..+++|+.|++++|..+........
T Consensus 192 ~l~~~L~~L~l~~~~~~~~~~~l~~----------------------------~~~~~~~L~~L~l~~~~~l~~~~~~~l 243 (336)
T 2ast_B 192 HVSETITQLNLSGYRKNLQKSDLST----------------------------LVRRCPNLVHLDLSDSVMLKNDCFQEF 243 (336)
T ss_dssp HSCTTCCEEECCSCGGGSCHHHHHH----------------------------HHHHCTTCSEEECTTCTTCCGGGGGGG
T ss_pred hcccCCCEEEeCCCcccCCHHHHHH----------------------------HHhhCCCCCEEeCCCCCcCCHHHHHHH
Confidence 777 777777765431 11111 133455566666665543322111111
Q ss_pred CcccccccccccEEEEcCCCCCCC--chhhhccCCCceEEEecC
Q 044595 410 GEVRQFVFHSLNKVEIYGCSKLKD--LTFLVFAPNLKSIKVTGS 451 (558)
Q Consensus 410 ~~~~~~~~~~L~~L~L~~~~~l~~--l~~l~~l~~L~~L~l~~c 451 (558)
. .+++|++|++++|..+.+ +..++.+++|+.|++++|
T Consensus 244 ~-----~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 244 F-----QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp G-----GCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred h-----CCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 1 256777777777753332 224666777777777776
No 82
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.65 E-value=5.3e-16 Score=154.15 Aligned_cols=237 Identities=16% Similarity=0.217 Sum_probs=160.1
Q ss_pred eEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCc-ccCCCCCCCeEeccCCCCC-Ccch-hhhcCCCCcEEeccC
Q 044595 206 LTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPL-GISKLVSLQHLDLSESDIE-ELPG-ELKALVNLKCLDLEY 282 (558)
Q Consensus 206 r~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~l~-~lp~-~i~~l~~L~~L~l~~ 282 (558)
++++.+++.++.+|..+ ..++++|+|++|.++.+|. .++++++|++|+|++|.+. .+|. .+..+++|+++...+
T Consensus 12 ~~v~C~~~~Lt~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 57788899999999874 4689999999999999986 5899999999999999875 4664 467888888766655
Q ss_pred CCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhccCCCcceEEEEEccchhHHHHhcccccc
Q 044595 283 TGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGLKSLEVISFTLRSSHGLQMILSSDQLR 362 (558)
Q Consensus 283 ~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 362 (558)
++.+..+|++.++.+++|++|++.++........ ......++..+++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~---------------~~~~~~~l~~l~l~----------------- 136 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDV---------------HKIHSLQKVLLDIQ----------------- 136 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCC---------------TTCCBSSCEEEEEE-----------------
T ss_pred CCcccccCchhhhhccccccccccccccccCCch---------------hhcccchhhhhhhc-----------------
Confidence 5588889877789999999999998865432110 11122223333332
Q ss_pred ccccceeeeeccCCCcccccchhhh-hhhhhhhhccccccceeEeccCCcccccccccccEEEEcCCCCCCCchh--hhc
Q 044595 363 SCTRALSFQCFNDSTSLEVSALADL-KQLKMLRIARSEILEELKMDCAGEVRQFVFHSLNKVEIYGCSKLKDLTF--LVF 439 (558)
Q Consensus 363 ~~L~~L~l~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~--l~~ 439 (558)
++..+..++...+..+ ..++.|+++++ .++.++..... ..+|++|.+.++..++.++. ++.
T Consensus 137 ---------~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~~~~f~------~~~L~~l~l~~~n~l~~i~~~~f~~ 200 (350)
T 4ay9_X 137 ---------DNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNSAFN------GTQLDELNLSDNNNLEELPNDVFHG 200 (350)
T ss_dssp ---------SCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECTTSST------TEEEEEEECTTCTTCCCCCTTTTTT
T ss_pred ---------cccccccccccchhhcchhhhhhccccc-cccCCChhhcc------ccchhHHhhccCCcccCCCHHHhcc
Confidence 2222222222222222 34666777665 55666555433 45777888877667777653 567
Q ss_pred cCCCceEEEecCchhHHHhhcCccCCcccccccCCCCcccceeeccCcccccccccCCCCCCCcceEeee
Q 044595 440 APNLKSIKVTGSHAMEAIISVGKFAEVPEVMANLNPFAKLQNLEVIGAINLKSIYWKPLRFPHLKTMSFF 509 (558)
Q Consensus 440 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~l~~L~~L~i~ 509 (558)
+++|+.|++++|.. +.++ ...|.+|+.|.+.++.+++.+|. ...+++|+.+++.
T Consensus 201 l~~L~~LdLs~N~l-~~lp--------------~~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 201 ASGPVILDISRTRI-HSLP--------------SYGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLT 254 (350)
T ss_dssp EECCSEEECTTSCC-CCCC--------------SSSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECS
T ss_pred CcccchhhcCCCCc-CccC--------------hhhhccchHhhhccCCCcCcCCC-chhCcChhhCcCC
Confidence 78888888877643 2221 24567777777777777777774 5567778877774
No 83
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.65 E-value=1.2e-15 Score=145.93 Aligned_cols=165 Identities=27% Similarity=0.412 Sum_probs=138.9
Q ss_pred cCcccccCCCCCCcccceEEEeecccccccCCCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcc-
Q 044595 167 AGVGLVEAPDVTGWEKARRLSLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLG- 245 (558)
Q Consensus 167 ~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~- 245 (558)
.+......+.+..++++++|++++|.+..++.+..+++|++|++++|.+..+++..+..+++|++|++++|.++.+|..
T Consensus 49 ~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 128 (272)
T 3rfs_A 49 NNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGV 128 (272)
T ss_dssp TTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred CCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHH
Confidence 3444555666778899999999999999998899999999999999999999998889999999999999999988654
Q ss_pred cCCCCCCCeEeccCCCCCCcchh-hhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccC
Q 044595 246 ISKLVSLQHLDLSESDIEELPGE-LKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFG 324 (558)
Q Consensus 246 i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 324 (558)
++.+++|++|++++|.++.+|.. ++.+++|++|++++| .+..+|...++.+++|++|++.++....
T Consensus 129 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~------------ 195 (272)
T 3rfs_A 129 FDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQLKS------------ 195 (272)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSC------------
T ss_pred hccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCCcCCc------------
Confidence 78999999999999999988765 589999999999998 6778888767899999999999886542
Q ss_pred CcchhHHHhccCCCcceEEEEEc
Q 044595 325 GGEFIVEELLGLKSLEVISFTLR 347 (558)
Q Consensus 325 ~~~~~~~~L~~l~~L~~L~l~~~ 347 (558)
.....+..+++|+.|++..+
T Consensus 196 ---~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 196 ---VPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp ---CCTTTTTTCTTCCEEECCSS
T ss_pred ---cCHHHHhCCcCCCEEEccCC
Confidence 12233566777777766543
No 84
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.64 E-value=1.9e-16 Score=184.05 Aligned_cols=140 Identities=22% Similarity=0.254 Sum_probs=118.6
Q ss_pred ccHHHHHHHHHHHcCCchhHHHHHHHHHcCCCChhhHHHHHHHHhccCCCC-----CCCccchhhhHHhcccCCCCcchh
Q 044595 2 PDILQLAQAAARECDGLPLALITIGRAMACKKTPDEWIYDIEVLRTSSSQF-----PGLGNEVYPLLKFSYDRLPSDTIK 76 (558)
Q Consensus 2 ~~l~~i~~~iv~~c~GlPLai~~ig~~L~~~~~~~~W~~~~~~l~~~~~~~-----~~~~~~i~~~L~~SY~~L~~~~lk 76 (558)
+++.+++++|+++|+|+||||+++|+.|+.+ . ..|+.+++.+....+.. ....+.+..++.+||+.||++ .|
T Consensus 304 ~~~~~~~~~i~~~~~glPLal~~~~~~l~~~-~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~-~~ 380 (1249)
T 3sfz_A 304 EDLPAEAHSIIKECKGSPLVVSLIGALLRDF-P-NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED-IK 380 (1249)
T ss_dssp TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHS-S-SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTT-TH
T ss_pred hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcC-h-hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHH-HH
Confidence 4566789999999999999999999999864 3 58999999997764331 111236899999999999996 99
Q ss_pred hhhcccccCCCCCccCHHHHHHHHHHcCccccCCchhhHHhHHHHHHHHHHhcccccCCCC---ceehhhHHHHHHHHHH
Q 044595 77 SCLLYCSLYPEDYCISKEKLIDCWIGEGFLTERDRIGEQKEGYHILGILLHACLLEEGGDG---EVKMHDVIRDMAIWIA 153 (558)
Q Consensus 77 ~cfl~~~~fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~---~~~mhdl~~~~~~~~~ 153 (558)
.||+|||+||+++.|+++.++.+|.++ ++.++.++++|++++|++....+ .|+||+++|++++..+
T Consensus 381 ~~~~~l~~f~~~~~i~~~~~~~~~~~~-----------~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~ 449 (1249)
T 3sfz_A 381 DYYTDLSILQKDVKVPTKVLCVLWDLE-----------TEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKN 449 (1249)
T ss_dssp HHHHHGGGSCTTCCEEHHHHHHHHTCC-----------HHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHT
T ss_pred HHHHHhCccCCCCeeCHHHHHHHhCCC-----------HHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhh
Confidence 999999999999999999999999665 36778899999999999977544 4999999999998876
Q ss_pred hh
Q 044595 154 CD 155 (558)
Q Consensus 154 ~~ 155 (558)
.+
T Consensus 450 ~~ 451 (1249)
T 3sfz_A 450 RS 451 (1249)
T ss_dssp GG
T ss_pred hH
Confidence 54
No 85
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.64 E-value=9e-16 Score=147.24 Aligned_cols=201 Identities=22% Similarity=0.247 Sum_probs=151.4
Q ss_pred ccceEEEeecccccccC--CCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccC-cccCCCCCCCeEec
Q 044595 181 EKARRLSLMHNQITNLS--EIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLP-LGISKLVSLQHLDL 257 (558)
Q Consensus 181 ~~lr~L~l~~~~~~~l~--~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l 257 (558)
+++++|++++|.+..++ .+..+++|++|++++|.+..++...+..+++|++|++++|.++.++ ..++++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 57999999999999876 5788999999999999999999877999999999999999999775 67899999999999
Q ss_pred cCCCCCCcch-hhhcCCCCcEEeccCCCCCCc--CchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhc
Q 044595 258 SESDIEELPG-ELKALVNLKCLDLEYTGNLIT--IPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELL 334 (558)
Q Consensus 258 ~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~--lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 334 (558)
++|.+..++. .++.+++|++|++++| .+.. +|.. ++++++|++|++.++..... .......+.
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~------------~~~~~~~l~ 173 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNKIQSI------------YCTDLRVLH 173 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECCSSCCCEE------------CGGGGHHHH
T ss_pred CCCCccccCchhcccCCCCCEEECcCC-ccceecCchh-hccCCCCCEEECCCCCCCcC------------CHHHhhhhh
Confidence 9999998876 5899999999999998 5555 5665 89999999999998866431 112233344
Q ss_pred cCCCcc-eEEEEEccchhHHHHhccccccccccceeeeeccCCCcccccchhhhhhhhhhhhccccccceeEeccCCccc
Q 044595 335 GLKSLE-VISFTLRSSHGLQMILSSDQLRSCTRALSFQCFNDSTSLEVSALADLKQLKMLRIARSEILEELKMDCAGEVR 413 (558)
Q Consensus 335 ~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~ 413 (558)
.++.|. .|+++.+. +...+...+ ...+|+.|+++++ .+..++.....
T Consensus 174 ~L~~l~l~L~ls~n~---------------------------l~~~~~~~~-~~~~L~~L~L~~n-~l~~~~~~~~~--- 221 (276)
T 2z62_A 174 QMPLLNLSLDLSLNP---------------------------MNFIQPGAF-KEIRLKELALDTN-QLKSVPDGIFD--- 221 (276)
T ss_dssp TCTTCCEEEECCSSC---------------------------CCEECTTSS-CSCCEEEEECCSS-CCSCCCTTTTT---
T ss_pred hccccceeeecCCCc---------------------------ccccCcccc-CCCcccEEECCCC-ceeecCHhHhc---
Confidence 444333 33333221 111111112 2247888999887 46666555433
Q ss_pred ccccccccEEEEcCCC
Q 044595 414 QFVFHSLNKVEIYGCS 429 (558)
Q Consensus 414 ~~~~~~L~~L~L~~~~ 429 (558)
.+++|+.|++++++
T Consensus 222 --~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 222 --RLTSLQKIWLHTNP 235 (276)
T ss_dssp --TCCSCCEEECCSSC
T ss_pred --ccccccEEEccCCc
Confidence 27899999999873
No 86
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.63 E-value=1.1e-16 Score=171.20 Aligned_cols=303 Identities=15% Similarity=0.160 Sum_probs=159.1
Q ss_pred CcccceEEEeecccccc-----cCCC-CCCCCceEEEeecCCccccC----chhhhCCCCCcEEEcCCC-CCcccCcccC
Q 044595 179 GWEKARRLSLMHNQITN-----LSEI-PTCPHLLTFFLNKNRFQMIP----NDFFQFMPSLKVLNLSYS-KLTSLPLGIS 247 (558)
Q Consensus 179 ~~~~lr~L~l~~~~~~~-----l~~~-~~~~~Lr~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~-~l~~lp~~i~ 247 (558)
.+++++.|++++|.+.+ ++.+ ..+++|++|+++++. ..+. ..+...+++|++|++++| .++.+|..+.
T Consensus 154 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~ 232 (594)
T 2p1m_B 154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQ 232 (594)
T ss_dssp HCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHH
T ss_pred hCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHh
Confidence 35677777777776544 2222 356777777777665 2222 122344677777777777 4445555566
Q ss_pred CCCCCCeEeccCCC-------------------------------CCCcchhhhcCCCCcEEeccCCCCCCc-Cchhhhc
Q 044595 248 KLVSLQHLDLSESD-------------------------------IEELPGELKALVNLKCLDLEYTGNLIT-IPRQLIS 295 (558)
Q Consensus 248 ~L~~L~~L~l~~~~-------------------------------l~~lp~~i~~l~~L~~L~l~~~~~l~~-lp~~~i~ 295 (558)
.+++|++|++..+. ...+|..+..+++|++|++++|. +.. ....++.
T Consensus 233 ~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~ 311 (594)
T 2p1m_B 233 RAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLC 311 (594)
T ss_dssp HCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHT
T ss_pred cCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHh
Confidence 66666666644331 11233334455667777776664 322 1222245
Q ss_pred CCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhccCCCcceEEEEEc--------cchhHHHHhccccccccccc
Q 044595 296 NLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGLKSLEVISFTLR--------SSHGLQMILSSDQLRSCTRA 367 (558)
Q Consensus 296 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~--------~~~~~~~~~~~~~~~~~L~~ 367 (558)
.+++|++|++.++ .. ......-...+++|+.|++... ...+...+........+|+.
T Consensus 312 ~~~~L~~L~l~~~-~~--------------~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~ 376 (594)
T 2p1m_B 312 QCPKLQRLWVLDY-IE--------------DAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLES 376 (594)
T ss_dssp TCTTCCEEEEEGG-GH--------------HHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCE
T ss_pred cCCCcCEEeCcCc-cC--------------HHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHH
Confidence 6677777777655 11 1112222234666777766321 11111111111111235666
Q ss_pred eeeeeccCCCcccccchh-hhhhhhhhhhc-----cccccceeEeccCCcccccccccccEEEEcCCCCCCC--chhhhc
Q 044595 368 LSFQCFNDSTSLEVSALA-DLKQLKMLRIA-----RSEILEELKMDCAGEVRQFVFHSLNKVEIYGCSKLKD--LTFLVF 439 (558)
Q Consensus 368 L~l~~~~~~~~~~~~~l~-~l~~L~~L~l~-----~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~--l~~l~~ 439 (558)
|.+ .+..+....+..+. .+++|+.|++. +|..+...+....-...-..+++|+.|+|++ .+++ ++.++.
T Consensus 377 L~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~ 453 (594)
T 2p1m_B 377 VLY-FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGT 453 (594)
T ss_dssp EEE-EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHH
T ss_pred HHH-hcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHH
Confidence 633 34444444333343 46777777777 3444442211000000011357788888865 3443 334444
Q ss_pred -cCCCceEEEecCchhHHHhhcCccCCcccccccCCCCcccceeeccCccccccccc--CCCCCCCcceEeeecCCC
Q 044595 440 -APNLKSIKVTGSHAMEAIISVGKFAEVPEVMANLNPFAKLQNLEVIGAINLKSIYW--KPLRFPHLKTMSFFHCNK 513 (558)
Q Consensus 440 -l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~--~~~~l~~L~~L~i~~C~~ 513 (558)
+++|+.|++++|..-...+. ....++++|++|++++|+. ..... ....+++|++|++++|+.
T Consensus 454 ~~~~L~~L~L~~~~i~~~~~~-----------~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 454 YAKKMEMLSVAFAGDSDLGMH-----------HVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HCTTCCEEEEESCCSSHHHHH-----------HHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred hchhccEeeccCCCCcHHHHH-----------HHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 78888888888764222211 1124578899999998875 33221 234578999999999965
No 87
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.63 E-value=2.9e-15 Score=144.46 Aligned_cols=200 Identities=20% Similarity=0.211 Sum_probs=150.3
Q ss_pred CCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCccc-CcccCCCCCCCeEeccCCCCCCcchhhhcCCCCcE
Q 044595 199 IPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSL-PLGISKLVSLQHLDLSESDIEELPGELKALVNLKC 277 (558)
Q Consensus 199 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~ 277 (558)
+..+++++.+++.++.++.+|..+ .+++++|++++|.++.+ |..+..+++|++|++++|.++.+|.. +.+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCE
Confidence 456788999999999999999864 37899999999999976 56799999999999999999988865 88999999
Q ss_pred EeccCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhccCCCcceEEEEEccchhHHHHhc
Q 044595 278 LDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGLKSLEVISFTLRSSHGLQMILS 357 (558)
Q Consensus 278 L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~ 357 (558)
|++++| .+..+|.. +..+++|++|++.++..... ....+..+++|+.|++..+..
T Consensus 82 L~Ls~N-~l~~l~~~-~~~l~~L~~L~l~~N~l~~l---------------~~~~~~~l~~L~~L~L~~N~l-------- 136 (290)
T 1p9a_G 82 LDLSHN-QLQSLPLL-GQTLPALTVLDVSFNRLTSL---------------PLGALRGLGELQELYLKGNEL-------- 136 (290)
T ss_dssp EECCSS-CCSSCCCC-TTTCTTCCEEECCSSCCCCC---------------CSSTTTTCTTCCEEECTTSCC--------
T ss_pred EECCCC-cCCcCchh-hccCCCCCEEECCCCcCccc---------------CHHHHcCCCCCCEEECCCCCC--------
Confidence 999998 77888876 78999999999998765431 122345566666665543221
Q ss_pred cccccccccceeeeeccCCCcccccchhhhhhhhhhhhccccccceeEeccCCcccccccccccEEEEcCCCCCCCch-h
Q 044595 358 SDQLRSCTRALSFQCFNDSTSLEVSALADLKQLKMLRIARSEILEELKMDCAGEVRQFVFHSLNKVEIYGCSKLKDLT-F 436 (558)
Q Consensus 358 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~-~ 436 (558)
...+...+..+++|+.|+++++ .+..++...... +++|+.|+++++ .++.+| .
T Consensus 137 -------------------~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~-----l~~L~~L~L~~N-~l~~ip~~ 190 (290)
T 1p9a_G 137 -------------------KTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNG-----LENLDTLLLQEN-SLYTIPKG 190 (290)
T ss_dssp -------------------CCCCTTTTTTCTTCCEEECTTS-CCSCCCTTTTTT-----CTTCCEEECCSS-CCCCCCTT
T ss_pred -------------------CccChhhcccccCCCEEECCCC-cCCccCHHHhcC-----cCCCCEEECCCC-cCCccChh
Confidence 1222223566788888888877 556665544332 788888888888 566654 4
Q ss_pred hhccCCCceEEEecCch
Q 044595 437 LVFAPNLKSIKVTGSHA 453 (558)
Q Consensus 437 l~~l~~L~~L~l~~c~~ 453 (558)
+...++|+.|++++|+.
T Consensus 191 ~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 191 FFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp TTTTCCCSEEECCSCCB
T ss_pred hcccccCCeEEeCCCCc
Confidence 66677888888887764
No 88
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.62 E-value=9.3e-16 Score=152.39 Aligned_cols=238 Identities=13% Similarity=0.117 Sum_probs=144.1
Q ss_pred EEEeecccccccCC-CCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCc-ccCc-ccCCCCCCCe-EeccCC
Q 044595 185 RLSLMHNQITNLSE-IPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLT-SLPL-GISKLVSLQH-LDLSES 260 (558)
Q Consensus 185 ~L~l~~~~~~~l~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~lp~-~i~~L~~L~~-L~l~~~ 260 (558)
.+..++++++.+|. + .++++.|++++|.++.+|+..|.++++|++|+|++|.+. .+|. .+.++++|+. +.+.++
T Consensus 13 ~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp EEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred EEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 34445555555543 2 245667777777777776666666777777777777653 3443 3556666554 444445
Q ss_pred CCCCcc-hhhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhccC-CC
Q 044595 261 DIEELP-GELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGL-KS 338 (558)
Q Consensus 261 ~l~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l-~~ 338 (558)
+++.+| ..+..+++|++|++++| .+..+|........++..|++.++.... ......+..+ ..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~--------------~l~~~~f~~~~~~ 155 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIH--------------TIERNSFVGLSFE 155 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCC--------------EECTTSSTTSBSS
T ss_pred cccccCchhhhhcccccccccccc-ccccCCchhhcccchhhhhhhccccccc--------------cccccchhhcchh
Confidence 666664 34566677777777666 4555554334444455556554432211 0000111222 23
Q ss_pred cceEEEEEccchhHHHHhccccccccccceeeeeccCCCcccccchhhhhhhhhhhhccccccceeEeccCCcccccccc
Q 044595 339 LEVISFTLRSSHGLQMILSSDQLRSCTRALSFQCFNDSTSLEVSALADLKQLKMLRIARSEILEELKMDCAGEVRQFVFH 418 (558)
Q Consensus 339 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~ 418 (558)
++.|++..+....++..... ...++.+.+.++..+..++...+..+++|+.|+++++ .+..++.. .+.
T Consensus 156 l~~L~L~~N~i~~i~~~~f~---~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~--------~~~ 223 (350)
T 4ay9_X 156 SVILWLNKNGIQEIHNSAFN---GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSY--------GLE 223 (350)
T ss_dssp CEEEECCSSCCCEECTTSST---TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSS--------SCT
T ss_pred hhhhccccccccCCChhhcc---ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChh--------hhc
Confidence 55555555544433221111 1256777777777777776656788899999999887 56665543 378
Q ss_pred cccEEEEcCCCCCCCchhhhccCCCceEEEecC
Q 044595 419 SLNKVEIYGCSKLKDLTFLVFAPNLKSIKVTGS 451 (558)
Q Consensus 419 ~L~~L~L~~~~~l~~l~~l~~l~~L~~L~l~~c 451 (558)
+|+.|.+.++..++.+|.+..+++|+.+++.+.
T Consensus 224 ~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 224 NLKKLRARSTYNLKKLPTLEKLVALMEASLTYP 256 (350)
T ss_dssp TCCEEECTTCTTCCCCCCTTTCCSCCEEECSCH
T ss_pred cchHhhhccCCCcCcCCCchhCcChhhCcCCCC
Confidence 899999999988999998889999999998753
No 89
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.62 E-value=3.5e-17 Score=159.99 Aligned_cols=243 Identities=19% Similarity=0.192 Sum_probs=167.1
Q ss_pred CCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCc--ccCcccC-------CCCCCCeEeccCCCCC-Ccchhh-
Q 044595 201 TCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLT--SLPLGIS-------KLVSLQHLDLSESDIE-ELPGEL- 269 (558)
Q Consensus 201 ~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~--~lp~~i~-------~L~~L~~L~l~~~~l~-~lp~~i- 269 (558)
..++|+.+++++|.+ .+|..+... |++|+++++.++ .+|..+. ++++|++|++++|.++ .+|..+
T Consensus 41 ~~~~L~~l~l~~n~l-~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE-ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEEECTTHHHHCCTT-CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred cCCCceeEeeccccc-ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 345677888888888 888775443 889999999886 4666665 7899999999999888 678776
Q ss_pred -hcCCCCcEEeccCCCCCCcCchhhhcCC-----CCCcEEEeeccCCCcccccccCCcccCCcchhHHHhccCCCcceEE
Q 044595 270 -KALVNLKCLDLEYTGNLITIPRQLISNL-----SRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGLKSLEVIS 343 (558)
Q Consensus 270 -~~l~~L~~L~l~~~~~l~~lp~~~i~~l-----~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~ 343 (558)
+.+++|++|++++| .+..+|.. ++.+ ++|++|++.++.... .....++.+++|+.|+
T Consensus 117 ~~~l~~L~~L~Ls~N-~l~~~~~~-~~~l~~~~~~~L~~L~L~~N~l~~---------------~~~~~~~~l~~L~~L~ 179 (312)
T 1wwl_A 117 EATGPDLNILNLRNV-SWATRDAW-LAELQQWLKPGLKVLSIAQAHSLN---------------FSCEQVRVFPALSTLD 179 (312)
T ss_dssp SCCSCCCSEEEEESC-BCSSSSSH-HHHHHTTCCTTCCEEEEESCSCCC---------------CCTTTCCCCSSCCEEE
T ss_pred HhcCCCccEEEccCC-CCcchhHH-HHHHHHhhcCCCcEEEeeCCCCcc---------------chHHHhccCCCCCEEE
Confidence 89999999999998 56666754 6666 899999999887643 2335567888888888
Q ss_pred EEEccchhHHHHhccccccccccceeeeeccCCCcccccchhhhhhhhhhhhccccccceeEe---ccCCcccccccccc
Q 044595 344 FTLRSSHGLQMILSSDQLRSCTRALSFQCFNDSTSLEVSALADLKQLKMLRIARSEILEELKM---DCAGEVRQFVFHSL 420 (558)
Q Consensus 344 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~---~~~~~~~~~~~~~L 420 (558)
++.+...+........ .+..+++|++|+++++ .+..++. ... ..+++|
T Consensus 180 Ls~N~l~~~~~~~~~~-----------------------~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~-----~~l~~L 230 (312)
T 1wwl_A 180 LSDNPELGERGLISAL-----------------------CPLKFPTLQVLALRNA-GMETPSGVCSALA-----AARVQL 230 (312)
T ss_dssp CCSCTTCHHHHHHHHS-----------------------CTTSCTTCCEEECTTS-CCCCHHHHHHHHH-----HTTCCC
T ss_pred CCCCCcCcchHHHHHH-----------------------HhccCCCCCEEECCCC-cCcchHHHHHHHH-----hcCCCC
Confidence 8866543221111100 1244566777777666 3332111 110 125788
Q ss_pred cEEEEcCCCCCCCc---hhhhccCCCceEEEecCchhHHHhhcCccCCcccccccCCCCcccceeeccCcccccccccCC
Q 044595 421 NKVEIYGCSKLKDL---TFLVFAPNLKSIKVTGSHAMEAIISVGKFAEVPEVMANLNPFAKLQNLEVIGAINLKSIYWKP 497 (558)
Q Consensus 421 ~~L~L~~~~~l~~l---~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~ 497 (558)
+.|+++++ .++.. +....+++|+.|++++|.. +.++ ..+. ++|++|+++++ +++.+|. .
T Consensus 231 ~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~Ls~N~l-~~ip------------~~~~--~~L~~L~Ls~N-~l~~~p~-~ 292 (312)
T 1wwl_A 231 QGLDLSHN-SLRDAAGAPSCDWPSQLNSLNLSFTGL-KQVP------------KGLP--AKLSVLDLSYN-RLDRNPS-P 292 (312)
T ss_dssp SEEECTTS-CCCSSCCCSCCCCCTTCCEEECTTSCC-SSCC------------SSCC--SEEEEEECCSS-CCCSCCC-T
T ss_pred CEEECCCC-cCCcccchhhhhhcCCCCEEECCCCcc-Chhh------------hhcc--CCceEEECCCC-CCCCChh-H
Confidence 88888887 55552 3345678888888888764 2221 2222 78888888874 6777765 6
Q ss_pred CCCCCcceEeeecC
Q 044595 498 LRFPHLKTMSFFHC 511 (558)
Q Consensus 498 ~~l~~L~~L~i~~C 511 (558)
..+++|++|++++.
T Consensus 293 ~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 293 DELPQVGNLSLKGN 306 (312)
T ss_dssp TTSCEEEEEECTTC
T ss_pred hhCCCCCEEeccCC
Confidence 67888999888775
No 90
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.61 E-value=3e-15 Score=144.52 Aligned_cols=101 Identities=26% Similarity=0.376 Sum_probs=54.3
Q ss_pred CCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcccCCCCCCCeEeccCCCCCCcchhhhcCCCCcEEec
Q 044595 201 TCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHLDLSESDIEELPGELKALVNLKCLDL 280 (558)
Q Consensus 201 ~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l 280 (558)
.+++|+.|++++|.+..++. +..+++|++|++++|.++.++. ++.+++|++|++++|.++.+| .++.+++|++|++
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L 119 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSL 119 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEEC
T ss_pred hcCcccEEEccCCCcccChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCCh-hhccCCCCCEEEC
Confidence 34455555555555555433 4555555555655555555544 555555666666555555544 2555555555555
Q ss_pred cCCCCCCcCchhhhcCCCCCcEEEeecc
Q 044595 281 EYTGNLITIPRQLISNLSRLHVLRMFGA 308 (558)
Q Consensus 281 ~~~~~l~~lp~~~i~~l~~L~~L~l~~~ 308 (558)
++| .+..++. ++.+++|++|++.++
T Consensus 120 ~~n-~i~~~~~--l~~l~~L~~L~l~~n 144 (291)
T 1h6t_A 120 EHN-GISDING--LVHLPQLESLYLGNN 144 (291)
T ss_dssp TTS-CCCCCGG--GGGCTTCCEEECCSS
T ss_pred CCC-cCCCChh--hcCCCCCCEEEccCC
Confidence 555 3444432 455555555555544
No 91
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.60 E-value=3.5e-16 Score=167.34 Aligned_cols=181 Identities=10% Similarity=-0.015 Sum_probs=95.7
Q ss_pred hccCCCcceEEEEEccchhHHHHhccccccccccceeeee--------ccCCCcccccchh-hhhhhhhhhhccccccce
Q 044595 333 LLGLKSLEVISFTLRSSHGLQMILSSDQLRSCTRALSFQC--------FNDSTSLEVSALA-DLKQLKMLRIARSEILEE 403 (558)
Q Consensus 333 L~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~--------~~~~~~~~~~~l~-~l~~L~~L~l~~~~~l~~ 403 (558)
+..+++|+.|.+..+ . ....+........+|+.|++.. +..+....+..+. .+++|+.|.+ +|..+..
T Consensus 310 ~~~~~~L~~L~l~~~-~-~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~-~~~~l~~ 386 (594)
T 2p1m_B 310 LCQCPKLQRLWVLDY-I-EDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY-FCRQMTN 386 (594)
T ss_dssp HTTCTTCCEEEEEGG-G-HHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEE-EESCCCH
T ss_pred HhcCCCcCEEeCcCc-c-CHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHH-hcCCcCH
Confidence 556777777777644 1 1111111111223677777733 2333333332332 3667777744 3333322
Q ss_pred eEeccCCcccccccccccEEEEc-----CCCCCCCchh-------hhccCCCceEEEecCchhHHHhhcCccCCcccccc
Q 044595 404 LKMDCAGEVRQFVFHSLNKVEIY-----GCSKLKDLTF-------LVFAPNLKSIKVTGSHAMEAIISVGKFAEVPEVMA 471 (558)
Q Consensus 404 l~~~~~~~~~~~~~~~L~~L~L~-----~~~~l~~l~~-------l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 471 (558)
...... ...+++|+.|++. +|..+++.+. +..+++|+.|++++ .+....- .
T Consensus 387 ~~~~~l----~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~-----------~ 449 (594)
T 2p1m_B 387 AALITI----ARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVF-----------E 449 (594)
T ss_dssp HHHHHH----HHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHH-----------H
T ss_pred HHHHHH----HhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHH-----------H
Confidence 111100 0136788888888 5666664321 45678888888866 2222100 1
Q ss_pred cCC-CCcccceeeccCccccccccc--CCCCCCCcceEeeecCCCCcCCCC--C-CCcccccceeEecch
Q 044595 472 NLN-PFAKLQNLEVIGAINLKSIYW--KPLRFPHLKTMSFFHCNKLKMLPL--D-SNSAREHSIVIRGDR 535 (558)
Q Consensus 472 ~~~-~~~~L~~L~l~~c~~L~~~~~--~~~~l~~L~~L~i~~C~~L~~lP~--~-~~~~~~~~~~i~~~~ 535 (558)
.+. .+++|++|++++|. +..... ....+++|++|++++|+. ...+. . .....++.+.+.+|.
T Consensus 450 ~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 450 YIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCS 517 (594)
T ss_dssp HHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSC
T ss_pred HHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCC
Confidence 112 37899999999876 332211 113589999999999975 32111 1 112456666777764
No 92
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.58 E-value=1.5e-15 Score=153.16 Aligned_cols=239 Identities=15% Similarity=0.146 Sum_probs=127.9
Q ss_pred CCCCCCceEEEeecCCccccCch----hhhCCCCCcEEEcCCCCCc----ccCccc-------CCCCCCCeEeccCCCCC
Q 044595 199 IPTCPHLLTFFLNKNRFQMIPND----FFQFMPSLKVLNLSYSKLT----SLPLGI-------SKLVSLQHLDLSESDIE 263 (558)
Q Consensus 199 ~~~~~~Lr~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~~~l~----~lp~~i-------~~L~~L~~L~l~~~~l~ 263 (558)
+..+++|++|++++|.+...... .+..+++|++|++++|.+. .+|..+ ..+++|++|++++|.+.
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 34566777778777776643221 2556777888888776444 234333 57778888888888777
Q ss_pred C-----cchhhhcCCCCcEEeccCCCCCCcCchhh----hcCC---------CCCcEEEeeccCCCcccccccCCcccCC
Q 044595 264 E-----LPGELKALVNLKCLDLEYTGNLITIPRQL----ISNL---------SRLHVLRMFGAGHNAFDEASKDSSLFGG 325 (558)
Q Consensus 264 ~-----lp~~i~~l~~L~~L~l~~~~~l~~lp~~~----i~~l---------~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 325 (558)
. +|..+..+++|++|++++|. +....... +..+ ++|++|++.++......
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~----------- 175 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS----------- 175 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG-----------
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHH-----------
Confidence 5 66677777888888888773 33221111 2223 77777777776543100
Q ss_pred cchhHHHhccCCCcceEEEEEccch--hHHHHhccccccccccceeeeeccCCCcccccchhhhhhhhhhhhcccccc--
Q 044595 326 GEFIVEELLGLKSLEVISFTLRSSH--GLQMILSSDQLRSCTRALSFQCFNDSTSLEVSALADLKQLKMLRIARSEIL-- 401 (558)
Q Consensus 326 ~~~~~~~L~~l~~L~~L~l~~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l-- 401 (558)
.......+..+++|+.|++..+... +...+.. ..+..+++|+.|++++|...
T Consensus 176 ~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~------------------------~~l~~~~~L~~L~Ls~n~l~~~ 231 (386)
T 2ca6_A 176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLL------------------------EGLAYCQELKVLDLQDNTFTHL 231 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHH------------------------TTGGGCTTCCEEECCSSCCHHH
T ss_pred HHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHH------------------------HHhhcCCCccEEECcCCCCCcH
Confidence 1112245566667777766655443 1111111 02334455555555555311
Q ss_pred --ceeEeccCCcccccccccccEEEEcCCCCCCCc------hhh--hccCCCceEEEecCchhHHHhhcCccCCcccccc
Q 044595 402 --EELKMDCAGEVRQFVFHSLNKVEIYGCSKLKDL------TFL--VFAPNLKSIKVTGSHAMEAIISVGKFAEVPEVMA 471 (558)
Q Consensus 402 --~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l------~~l--~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 471 (558)
..++.... .+++|+.|+|++| .+.+. ..+ +.+++|+.|+|++|..-..-. ..++.
T Consensus 232 g~~~l~~~l~------~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~--------~~l~~ 296 (386)
T 2ca6_A 232 GSSALAIALK------SWPNLRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV--------RTLKT 296 (386)
T ss_dssp HHHHHHHHGG------GCTTCCEEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHH--------HHHHH
T ss_pred HHHHHHHHHc------cCCCcCEEECCCC-CCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHH--------HHHHH
Confidence 11221111 2566777777776 44442 223 226777777777665433100 01111
Q ss_pred cC-CCCcccceeeccCcc
Q 044595 472 NL-NPFAKLQNLEVIGAI 488 (558)
Q Consensus 472 ~~-~~~~~L~~L~l~~c~ 488 (558)
.+ ..+++|++|++++++
T Consensus 297 ~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 297 VIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHCTTCCEEECTTSB
T ss_pred HHHhcCCCceEEEccCCc
Confidence 22 345677777776653
No 93
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.57 E-value=1.2e-15 Score=163.93 Aligned_cols=112 Identities=14% Similarity=0.186 Sum_probs=97.9
Q ss_pred HcCCchhHHHHHHHHHcCC-CChhhHHHHHHHHhccCCCCCCCccchhhhHHhcccCCCCcch-hhhhcccccCCCCCcc
Q 044595 14 ECDGLPLALITIGRAMACK-KTPDEWIYDIEVLRTSSSQFPGLGNEVYPLLKFSYDRLPSDTI-KSCLLYCSLYPEDYCI 91 (558)
Q Consensus 14 ~c~GlPLai~~ig~~L~~~-~~~~~W~~~~~~l~~~~~~~~~~~~~i~~~L~~SY~~L~~~~l-k~cfl~~~~fp~~~~i 91 (558)
.|+|+||||+++|+.|+.+ .+.+.|+.. . ...+..+|.+||+.||++ . |.||+|||+||+++.|
T Consensus 322 ICgGLPLALkLaGs~Lr~k~~s~eeW~~~--------~-----~~~I~aaLelSYd~Lp~e-elK~cFL~LAIFPed~~I 387 (1221)
T 1vt4_I 322 VLTTNPRRLSIIAESIRDGLATWDNWKHV--------N-----CDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHI 387 (1221)
T ss_dssp HCCCCHHHHHHHHHHHHHSCSSHHHHHHC--------S-----CHHHHHHHHHHHHHSCTT-HHHHHHHHTTSSCTTSCE
T ss_pred HhCCCHHHHHHHHHHHhCCCCCHHHHhcC--------C-----hhHHHHHHHHHHHhCCHH-HHHHHHHHHhCCCCCCCC
Confidence 3999999999999999985 367888753 1 257999999999999996 8 9999999999999999
Q ss_pred CHHHHHHHHHHcCccccCCchhhHHhHHHHHHHHHHhcccccC-CCCceehhhHHHHHH
Q 044595 92 SKEKLIDCWIGEGFLTERDRIGEQKEGYHILGILLHACLLEEG-GDGEVKMHDVIRDMA 149 (558)
Q Consensus 92 ~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~~~~L~~~~l~~~~-~~~~~~mhdl~~~~~ 149 (558)
+++.++.+|+++| ++.+..++++|+++||++.. +...|+|||++++++
T Consensus 388 ~~elLa~LW~aeG----------eedAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 388 PTILLSLIWFDVI----------KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp EHHHHHHHHCSSC----------SHHHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred CHHHHHHHhcCCC----------HHHHHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 9999999999987 23578899999999999986 357899999999865
No 94
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.57 E-value=1.4e-14 Score=131.26 Aligned_cols=151 Identities=19% Similarity=0.240 Sum_probs=128.3
Q ss_pred CCcccceEEEeecccccccCCCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcc-cCcccCCCCCCCeEe
Q 044595 178 TGWEKARRLSLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTS-LPLGISKLVSLQHLD 256 (558)
Q Consensus 178 ~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~i~~L~~L~~L~ 256 (558)
..+++++.|+++++.+..++.+..+++|++|++++|.+..++. +..+++|++|++++|.++. .|..++.+++|++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGG--GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchh--hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 4567899999999999998888899999999999998876653 7889999999999999985 678899999999999
Q ss_pred ccCCCCCC-cchhhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhcc
Q 044595 257 LSESDIEE-LPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLG 335 (558)
Q Consensus 257 l~~~~l~~-lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 335 (558)
+++|.++. .|..++.+++|++|++++|..+..+|. ++.+++|++|++.++.... +..+..
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~-----------------~~~l~~ 179 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHD-----------------YRGIED 179 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCC-----------------CTTGGG
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcC-----------------hHHhcc
Confidence 99999884 677899999999999999965888874 8999999999999886542 125778
Q ss_pred CCCcceEEEEEccc
Q 044595 336 LKSLEVISFTLRSS 349 (558)
Q Consensus 336 l~~L~~L~l~~~~~ 349 (558)
+++|+.|++..+..
T Consensus 180 l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 180 FPKLNQLYAFSQTI 193 (197)
T ss_dssp CSSCCEEEECBC--
T ss_pred CCCCCEEEeeCccc
Confidence 88999998876654
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.56 E-value=1.4e-14 Score=139.74 Aligned_cols=149 Identities=23% Similarity=0.321 Sum_probs=117.9
Q ss_pred CCCcccceEEEeecccccccCCCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcccCCCCCCCeEe
Q 044595 177 VTGWEKARRLSLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHLD 256 (558)
Q Consensus 177 ~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~ 256 (558)
...+++++.|+++++.+..++.+..+++|++|++++|.+..+++ +..+++|++|++++|.++.+|. ++.+++|++|+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEE
T ss_pred hhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEEE
Confidence 34567888899988888888888888899999999998888776 7888999999999998888764 88889999999
Q ss_pred ccCCCCCCcchhhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhccC
Q 044595 257 LSESDIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGL 336 (558)
Q Consensus 257 l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l 336 (558)
+++|.+..++ .+..+++|++|++++| .+..++. ++.+++|++|++.++.... .. .+..+
T Consensus 119 L~~n~i~~~~-~l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~L~~N~l~~----------------~~-~l~~l 177 (291)
T 1h6t_A 119 LEHNGISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQISD----------------IV-PLAGL 177 (291)
T ss_dssp CTTSCCCCCG-GGGGCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECCSSCCCC----------------CG-GGTTC
T ss_pred CCCCcCCCCh-hhcCCCCCCEEEccCC-cCCcchh--hccCCCCCEEEccCCcccc----------------ch-hhcCC
Confidence 9999888875 6888889999999887 5666643 7888999999988776542 11 16677
Q ss_pred CCcceEEEEEccc
Q 044595 337 KSLEVISFTLRSS 349 (558)
Q Consensus 337 ~~L~~L~l~~~~~ 349 (558)
++|+.|++..+..
T Consensus 178 ~~L~~L~L~~N~i 190 (291)
T 1h6t_A 178 TKLQNLYLSKNHI 190 (291)
T ss_dssp TTCCEEECCSSCC
T ss_pred CccCEEECCCCcC
Confidence 7777777765443
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.56 E-value=2.8e-15 Score=158.76 Aligned_cols=100 Identities=27% Similarity=0.385 Sum_probs=44.4
Q ss_pred CCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcccCCCCCCCeEeccCCCCCCcchhhhcCCCCcEEecc
Q 044595 202 CPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHLDLSESDIEELPGELKALVNLKCLDLE 281 (558)
Q Consensus 202 ~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 281 (558)
+++|+.|+++++.+..++. +..+++|+.|+|++|.++.+|. ++.+++|++|+|++|.+..+| .+..+++|++|+++
T Consensus 42 L~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLE 117 (605)
T ss_dssp HTTCCCCBCTTCCCCCCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECT
T ss_pred CCCCCEEECcCCCCCCChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEec
Confidence 3444444444444444432 3444444444444444444433 444444444444444444443 34444444444444
Q ss_pred CCCCCCcCchhhhcCCCCCcEEEeecc
Q 044595 282 YTGNLITIPRQLISNLSRLHVLRMFGA 308 (558)
Q Consensus 282 ~~~~l~~lp~~~i~~l~~L~~L~l~~~ 308 (558)
+| .+..++. +..+++|+.|++.++
T Consensus 118 ~N-~l~~l~~--l~~l~~L~~L~Ls~N 141 (605)
T 1m9s_A 118 HN-GISDING--LVHLPQLESLYLGNN 141 (605)
T ss_dssp TS-CCCCCGG--GGGCTTCSEEECCSS
T ss_pred CC-CCCCCcc--ccCCCccCEEECCCC
Confidence 44 2333332 344444444444443
No 97
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.55 E-value=5.2e-14 Score=132.81 Aligned_cols=153 Identities=24% Similarity=0.331 Sum_probs=123.2
Q ss_pred ccceEEEeecccccccC--CCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCc-ccCCCCCCCeEec
Q 044595 181 EKARRLSLMHNQITNLS--EIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPL-GISKLVSLQHLDL 257 (558)
Q Consensus 181 ~~lr~L~l~~~~~~~l~--~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l 257 (558)
..++.|++++|.+..++ .+..+++|++|++++|.+..+++..+..+++|++|++++|.++.+|. .++.+++|++|++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 57889999999888875 36788899999999999988888778889999999999998887754 5688899999999
Q ss_pred cCCCCCCcchh-hhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhccC
Q 044595 258 SESDIEELPGE-LKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGL 336 (558)
Q Consensus 258 ~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l 336 (558)
++|.++.+|.. +..+++|++|++++| .+..+|...++.+++|++|++.++..... ....+..+
T Consensus 115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---------------~~~~~~~l 178 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQSV---------------PHGAFDRL 178 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCC---------------CTTTTTTC
T ss_pred CCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcCCcc---------------CHHHHhCC
Confidence 99988888765 578899999999988 67788876688899999999988765421 22346677
Q ss_pred CCcceEEEEEccc
Q 044595 337 KSLEVISFTLRSS 349 (558)
Q Consensus 337 ~~L~~L~l~~~~~ 349 (558)
++|+.|++..+..
T Consensus 179 ~~L~~L~l~~N~~ 191 (251)
T 3m19_A 179 GKLQTITLFGNQF 191 (251)
T ss_dssp TTCCEEECCSCCB
T ss_pred CCCCEEEeeCCce
Confidence 8888888876554
No 98
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.55 E-value=9.8e-15 Score=142.46 Aligned_cols=84 Identities=18% Similarity=0.124 Sum_probs=53.2
Q ss_pred CCCCcEEEcCCCCCc-ccCccc--CCCCCCCeEeccCCCCCCc-c----hhhhcCCCCcEEeccCCCCCCcCchhhhcCC
Q 044595 226 MPSLKVLNLSYSKLT-SLPLGI--SKLVSLQHLDLSESDIEEL-P----GELKALVNLKCLDLEYTGNLITIPRQLISNL 297 (558)
Q Consensus 226 l~~L~~L~l~~~~l~-~lp~~i--~~L~~L~~L~l~~~~l~~l-p----~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l 297 (558)
+.+|++|++++|.++ ..|..+ +.+++|++|++++|.+... | ..+..+++|++|++++| .+..++...++.+
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l 168 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA-HSPAFSCEQVRAF 168 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC-SSCCCCTTSCCCC
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC-CcchhhHHHhccC
Confidence 355777777777666 345555 6677777777777766632 1 23345677777777776 4455554446677
Q ss_pred CCCcEEEeeccCC
Q 044595 298 SRLHVLRMFGAGH 310 (558)
Q Consensus 298 ~~L~~L~l~~~~~ 310 (558)
++|++|+++++..
T Consensus 169 ~~L~~L~Ls~N~l 181 (310)
T 4glp_A 169 PALTSLDLSDNPG 181 (310)
T ss_dssp TTCCEEECCSCTT
T ss_pred CCCCEEECCCCCC
Confidence 7777777776643
No 99
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.54 E-value=1.8e-15 Score=152.59 Aligned_cols=247 Identities=15% Similarity=0.126 Sum_probs=158.8
Q ss_pred ecCCccccCchhhhCCCCCcEEEcCCCCCcc-----cCcccCCCCCCCeEeccCCCCC----Ccchhh-------hcCCC
Q 044595 211 NKNRFQMIPNDFFQFMPSLKVLNLSYSKLTS-----LPLGISKLVSLQHLDLSESDIE----ELPGEL-------KALVN 274 (558)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-----lp~~i~~L~~L~~L~l~~~~l~----~lp~~i-------~~l~~ 274 (558)
....+..++.. +..+++|++|++++|.++. ++..+..+++|++|++++|.+. .+|..+ ..+++
T Consensus 17 ~~~~~~~l~~~-l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~ 95 (386)
T 2ca6_A 17 TTEDEKSVFAV-LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPK 95 (386)
T ss_dssp CSHHHHTTSHH-HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTT
T ss_pred CHHHHHHHHHH-HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCc
Confidence 33444455554 6778999999999998873 4455778999999999998665 345444 67899
Q ss_pred CcEEeccCCCCCCc-----CchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhccC---------CCcc
Q 044595 275 LKCLDLEYTGNLIT-----IPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGL---------KSLE 340 (558)
Q Consensus 275 L~~L~l~~~~~l~~-----lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l---------~~L~ 340 (558)
|++|++++|. +.. +|.. +..+++|++|++.+|...... .......+..+ ++|+
T Consensus 96 L~~L~Ls~n~-l~~~~~~~l~~~-l~~~~~L~~L~L~~n~l~~~~-----------~~~l~~~l~~l~~~~~~~~~~~L~ 162 (386)
T 2ca6_A 96 LHTVRLSDNA-FGPTAQEPLIDF-LSKHTPLEHLYLHNNGLGPQA-----------GAKIARALQELAVNKKAKNAPPLR 162 (386)
T ss_dssp CCEEECCSCC-CCTTTHHHHHHH-HHHCTTCCEEECCSSCCHHHH-----------HHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred ccEEECCCCc-CCHHHHHHHHHH-HHhCCCCCEEECcCCCCCHHH-----------HHHHHHHHHHHhhhhhcccCCCCc
Confidence 9999999884 444 5544 688899999999887652100 01122223333 5555
Q ss_pred eEEEEEccch--hHHHHhccccccccccceeeeeccCCCcccccchhhhhhhhhhhhccccccce-----eEeccCCccc
Q 044595 341 VISFTLRSSH--GLQMILSSDQLRSCTRALSFQCFNDSTSLEVSALADLKQLKMLRIARSEILEE-----LKMDCAGEVR 413 (558)
Q Consensus 341 ~L~l~~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~-----l~~~~~~~~~ 413 (558)
.|++..+... ..+.+. ..+..+++|++|++++| .+.. +.+....
T Consensus 163 ~L~L~~n~l~~~~~~~l~-------------------------~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~--- 213 (386)
T 2ca6_A 163 SIICGRNRLENGSMKEWA-------------------------KTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLA--- 213 (386)
T ss_dssp EEECCSSCCTGGGHHHHH-------------------------HHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGG---
T ss_pred EEECCCCCCCcHHHHHHH-------------------------HHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhh---
Confidence 5555444322 111111 13456677888888777 3321 1111111
Q ss_pred ccccccccEEEEcCCCCCC-----Cc-hhhhccCCCceEEEecCchhHHHhhcCccCCcccccccC--CCCcccceeecc
Q 044595 414 QFVFHSLNKVEIYGCSKLK-----DL-TFLVFAPNLKSIKVTGSHAMEAIISVGKFAEVPEVMANL--NPFAKLQNLEVI 485 (558)
Q Consensus 414 ~~~~~~L~~L~L~~~~~l~-----~l-~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~ 485 (558)
.+++|+.|+|++| .++ .+ ..+..+++|++|+|++|..-..... .++..+ +.+++|++|+|+
T Consensus 214 --~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~--------~l~~~l~~~~~~~L~~L~L~ 282 (386)
T 2ca6_A 214 --YCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA--------AVVDAFSKLENIGLQTLRLQ 282 (386)
T ss_dssp --GCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH--------HHHHHHHTCSSCCCCEEECC
T ss_pred --cCCCccEEECcCC-CCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH--------HHHHHHhhccCCCeEEEECc
Confidence 3789999999999 463 23 3477899999999999975332110 122233 448999999999
Q ss_pred Ccccccc-----cccCC-CCCCCcceEeeecCC
Q 044595 486 GAINLKS-----IYWKP-LRFPHLKTMSFFHCN 512 (558)
Q Consensus 486 ~c~~L~~-----~~~~~-~~l~~L~~L~i~~C~ 512 (558)
+|. +.. ++... ..+++|++|++++|+
T Consensus 283 ~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 283 YNE-IELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp SSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred CCc-CCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 975 444 55443 458999999999984
No 100
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.52 E-value=1.3e-13 Score=128.08 Aligned_cols=130 Identities=31% Similarity=0.471 Sum_probs=105.4
Q ss_pred ccceEEEeecccccccC--CCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcc-cCCCCCCCeEec
Q 044595 181 EKARRLSLMHNQITNLS--EIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLG-ISKLVSLQHLDL 257 (558)
Q Consensus 181 ~~lr~L~l~~~~~~~l~--~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l 257 (558)
++++.|++++|.+..+. .+..+++|++|++++|.+..++...+..+++|++|++++|.++.+|.. +..+++|++|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 67888888888888763 367788888888888888888877778888888888888888877654 577888888888
Q ss_pred cCCCCCCcchhhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCC
Q 044595 258 SESDIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHN 311 (558)
Q Consensus 258 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 311 (558)
++|.++.+|..+..+++|++|++++| .+..+|...+..+++|++|++.++...
T Consensus 120 s~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 120 CCNKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CSSCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCCcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 88888888888888888888888887 677777666788888888888776543
No 101
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.52 E-value=1.7e-14 Score=143.97 Aligned_cols=256 Identities=14% Similarity=0.133 Sum_probs=140.2
Q ss_pred Eeeccccccc-CCC-CCCCCceEEEeecCCccccCc----hhhhCCC-CCcEEEcCCCCCccc-CcccCCC-----CCCC
Q 044595 187 SLMHNQITNL-SEI-PTCPHLLTFFLNKNRFQMIPN----DFFQFMP-SLKVLNLSYSKLTSL-PLGISKL-----VSLQ 253 (558)
Q Consensus 187 ~l~~~~~~~l-~~~-~~~~~Lr~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~l~~l-p~~i~~L-----~~L~ 253 (558)
.++.+.++.. +.+ ...++|++|++++|.+...+. ..+..++ +|++|++++|.++.. +..++.+ ++|+
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 83 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCcc
Confidence 4445555432 222 233447777777777777665 4566676 777777777777644 4444443 7777
Q ss_pred eEeccCCCCCCcc-hh----hhcC-CCCcEEeccCCCCCCcCchhhhc----C-CCCCcEEEeeccCCCcccccccCCcc
Q 044595 254 HLDLSESDIEELP-GE----LKAL-VNLKCLDLEYTGNLITIPRQLIS----N-LSRLHVLRMFGAGHNAFDEASKDSSL 322 (558)
Q Consensus 254 ~L~l~~~~l~~lp-~~----i~~l-~~L~~L~l~~~~~l~~lp~~~i~----~-l~~L~~L~l~~~~~~~~~~~~~~~~~ 322 (558)
+|++++|.++..+ .. +..+ ++|++|++++| .+...+...+. . .++|++|++.++......
T Consensus 84 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~-------- 154 (362)
T 3goz_A 84 SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKS-------- 154 (362)
T ss_dssp EEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSC--------
T ss_pred EEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHH--------
Confidence 7777777776443 22 3334 67777777777 45555443222 2 247777777766443110
Q ss_pred cCCcchhHHHhccCC-CcceEEEEEccchhHHHHhccccccccccceeeeeccCCCcccc-cchhhh-hhhhhhhhcccc
Q 044595 323 FGGGEFIVEELLGLK-SLEVISFTLRSSHGLQMILSSDQLRSCTRALSFQCFNDSTSLEV-SALADL-KQLKMLRIARSE 399 (558)
Q Consensus 323 ~~~~~~~~~~L~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~l~~l-~~L~~L~l~~~~ 399 (558)
.......+..+. +|++|++..+....... ..+ ..+..+ ++|+.|+++++.
T Consensus 155 ---~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~------------------------~~l~~~l~~~~~~L~~L~Ls~N~ 207 (362)
T 3goz_A 155 ---SDELIQILAAIPANVNSLNLRGNNLASKNC------------------------AELAKFLASIPASVTSLDLSANL 207 (362)
T ss_dssp ---HHHHHHHHHTSCTTCCEEECTTSCGGGSCH------------------------HHHHHHHHTSCTTCCEEECTTSC
T ss_pred ---HHHHHHHHhcCCccccEeeecCCCCchhhH------------------------HHHHHHHHhCCCCCCEEECCCCC
Confidence 112333444443 56555555433221100 000 012333 477777777763
Q ss_pred ccceeEeccCCcccccccccccEEEEcCCCCCCCchh------hhccCCCceEEEecCch---hHHHhhcCccCCccccc
Q 044595 400 ILEELKMDCAGEVRQFVFHSLNKVEIYGCSKLKDLTF------LVFAPNLKSIKVTGSHA---MEAIISVGKFAEVPEVM 470 (558)
Q Consensus 400 ~l~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~------l~~l~~L~~L~l~~c~~---l~~~~~~~~~~~~~~~~ 470 (558)
+...+.......-....++|++|+|++| .+.+.+. +..+++|+.|++++|.. ..... ..+.
T Consensus 208 -i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~--------~~l~ 277 (362)
T 3goz_A 208 -LGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQC--------KALG 277 (362)
T ss_dssp -GGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHH--------HHHH
T ss_pred -CChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHH--------HHHH
Confidence 3321110000000001358999999988 6666432 35678999999998861 11101 1233
Q ss_pred ccCCCCcccceeeccCcc
Q 044595 471 ANLNPFAKLQNLEVIGAI 488 (558)
Q Consensus 471 ~~~~~~~~L~~L~l~~c~ 488 (558)
..+..+++|+.|+++++.
T Consensus 278 ~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 278 AAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp TTSTTCCEEEEECTTSCB
T ss_pred HHhccCCceEEEecCCCc
Confidence 456678888999988754
No 102
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.50 E-value=1.3e-13 Score=130.85 Aligned_cols=150 Identities=20% Similarity=0.251 Sum_probs=129.9
Q ss_pred CCCCcccceEEEeecccccccCCCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcccCCCCCCCeE
Q 044595 176 DVTGWEKARRLSLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHL 255 (558)
Q Consensus 176 ~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L 255 (558)
.+..+++++.|++++|.+..++.+..+++|++|++++|.+..+++ +..+++|++|++++|.++.+|... . .+|++|
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~-~-~~L~~L 111 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIP-S-ACLSRL 111 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCC-C-SSCCEE
T ss_pred chhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCccc-c-CcccEE
Confidence 455678999999999999999988899999999999999999887 789999999999999999987644 3 999999
Q ss_pred eccCCCCCCcchhhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhcc
Q 044595 256 DLSESDIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLG 335 (558)
Q Consensus 256 ~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 335 (558)
++++|.++.+| .++.+++|++|++++| .+..++. ++.+++|++|++.++.... ...+..
T Consensus 112 ~L~~N~l~~~~-~l~~l~~L~~L~Ls~N-~i~~~~~--l~~l~~L~~L~L~~N~i~~-----------------~~~l~~ 170 (263)
T 1xeu_A 112 FLDNNELRDTD-SLIHLKNLEILSIRNN-KLKSIVM--LGFLSKLEVLDLHGNEITN-----------------TGGLTR 170 (263)
T ss_dssp ECCSSCCSBSG-GGTTCTTCCEEECTTS-CCCBCGG--GGGCTTCCEEECTTSCCCB-----------------CTTSTT
T ss_pred EccCCccCCCh-hhcCcccccEEECCCC-cCCCChH--HccCCCCCEEECCCCcCcc-----------------hHHhcc
Confidence 99999999887 6899999999999998 6778873 8899999999999886642 155778
Q ss_pred CCCcceEEEEEccch
Q 044595 336 LKSLEVISFTLRSSH 350 (558)
Q Consensus 336 l~~L~~L~l~~~~~~ 350 (558)
+++|+.|++..+...
T Consensus 171 l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 171 LKKVNWIDLTGQKCV 185 (263)
T ss_dssp CCCCCEEEEEEEEEE
T ss_pred CCCCCEEeCCCCccc
Confidence 899999999877654
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.49 E-value=5.9e-14 Score=148.56 Aligned_cols=169 Identities=21% Similarity=0.295 Sum_probs=112.3
Q ss_pred CCCcccceEEEeecccccccCCCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcccCCCCCCCeEe
Q 044595 177 VTGWEKARRLSLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHLD 256 (558)
Q Consensus 177 ~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~ 256 (558)
...+.+++.|++.++.+..++.+..+++|+.|++++|.+..+++ +..+++|++|+|++|.++.+| .++.+++|++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEE
T ss_pred hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEE
Confidence 33456677777777777777777777777777777777777665 667777777777777777765 577777777777
Q ss_pred ccCCCCCCcchhhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhccC
Q 044595 257 LSESDIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGL 336 (558)
Q Consensus 257 l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l 336 (558)
|++|.+..+| .+..+++|+.|++++| .+..++. ++.+++|+.|++.++.... ... +..+
T Consensus 116 Ls~N~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~~--l~~l~~L~~L~Ls~N~l~~----------------~~~-l~~l 174 (605)
T 1m9s_A 116 LEHNGISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQISD----------------IVP-LAGL 174 (605)
T ss_dssp CTTSCCCCCG-GGGGCTTCSEEECCSS-CCCCCGG--GGSCTTCSEEECCSSCCCC----------------CGG-GTTC
T ss_pred ecCCCCCCCc-cccCCCccCEEECCCC-ccCCchh--hcccCCCCEEECcCCcCCC----------------chh-hccC
Confidence 7777777765 5777777777777776 5555532 6777777777777665432 111 6667
Q ss_pred CCcceEEEEEccchhHHHHhccccccccccceeeeec
Q 044595 337 KSLEVISFTLRSSHGLQMILSSDQLRSCTRALSFQCF 373 (558)
Q Consensus 337 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 373 (558)
++|+.|++..+....++.+.. ..+|+.|+++++
T Consensus 175 ~~L~~L~Ls~N~i~~l~~l~~----l~~L~~L~L~~N 207 (605)
T 1m9s_A 175 TKLQNLYLSKNHISDLRALAG----LKNLDVLELFSQ 207 (605)
T ss_dssp TTCCEEECCSSCCCBCGGGTT----CTTCSEEECCSE
T ss_pred CCCCEEECcCCCCCCChHHcc----CCCCCEEEccCC
Confidence 777777776655544322111 124555555543
No 104
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.48 E-value=2.4e-13 Score=128.27 Aligned_cols=135 Identities=28% Similarity=0.477 Sum_probs=121.9
Q ss_pred CCCCcccceEEEeecccccccCC--CCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcc-cCCCCCC
Q 044595 176 DVTGWEKARRLSLMHNQITNLSE--IPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLG-ISKLVSL 252 (558)
Q Consensus 176 ~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L 252 (558)
.+..++++++|++++|.+..++. +..+++|++|++++|.+..++...+..+++|++|++++|.++.+|.. ++.+++|
T Consensus 54 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 133 (251)
T 3m19_A 54 TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKL 133 (251)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred HhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcc
Confidence 46778999999999999998754 78899999999999999999988899999999999999999988765 6889999
Q ss_pred CeEeccCCCCCCcch-hhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCC
Q 044595 253 QHLDLSESDIEELPG-ELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHN 311 (558)
Q Consensus 253 ~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 311 (558)
++|++++|.++.+|. .++.+++|++|++++| .+..+|...+..+++|++|++.++...
T Consensus 134 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 134 KELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred cEEECcCCcCCccCHHHcCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 999999999999987 5899999999999998 677888776899999999999988654
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.48 E-value=4.2e-13 Score=123.70 Aligned_cols=126 Identities=28% Similarity=0.318 Sum_probs=60.1
Q ss_pred cceEEEeecccccccC--CCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcc-cCCCCCCCeEecc
Q 044595 182 KARRLSLMHNQITNLS--EIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLG-ISKLVSLQHLDLS 258 (558)
Q Consensus 182 ~lr~L~l~~~~~~~l~--~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~ 258 (558)
+++.|++++|.+..++ .+..+++|++|++++|.+..+++..|..+++|++|++++|.++.+|.. +..+++|++|+++
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 112 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN 112 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence 4455555555544443 244445555555555555544433344555555555555555544433 3445555555555
Q ss_pred CCCCCCc-chhhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeecc
Q 044595 259 ESDIEEL-PGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGA 308 (558)
Q Consensus 259 ~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~ 308 (558)
+|.++.+ |..+..+++|++|++++| .+..++...+..+++|++|++.++
T Consensus 113 ~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 113 ANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCC
Confidence 5554444 223444555555555544 344444433444555555554443
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.48 E-value=1.8e-13 Score=126.10 Aligned_cols=149 Identities=19% Similarity=0.295 Sum_probs=124.8
Q ss_pred eEEEeecccccccCCCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCccc-CcccCCCCCCCeEeccCCCC
Q 044595 184 RRLSLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSL-PLGISKLVSLQHLDLSESDI 262 (558)
Q Consensus 184 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~l 262 (558)
+.++..++.++.+|.- -.+.++.|++++|.+..+++..|..+++|++|++++|.++.+ |..+.++++|++|++++|.+
T Consensus 14 ~~v~c~~~~l~~iP~~-l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTN-LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp TEEECTTSCCSSCCSS-CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred CEEEcCCCCcCcCCCc-cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 4577777888877652 227899999999999999987799999999999999999977 78899999999999999999
Q ss_pred CCcchh-hhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhccCCCcce
Q 044595 263 EELPGE-LKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGLKSLEV 341 (558)
Q Consensus 263 ~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~ 341 (558)
+.+|.. +..+++|++|++++| .+..++...+..+++|++|++.++....+ ....+..+++|+.
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---------------~~~~~~~l~~L~~ 156 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNKLQTI---------------AKGTFSPLRAIQT 156 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCC---------------CTTTTTTCTTCCE
T ss_pred CccCHhHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCcCCEE---------------CHHHHhCCCCCCE
Confidence 999876 588999999999998 67777766689999999999998876432 2234667888888
Q ss_pred EEEEEccc
Q 044595 342 ISFTLRSS 349 (558)
Q Consensus 342 L~l~~~~~ 349 (558)
|++..+..
T Consensus 157 L~L~~N~~ 164 (220)
T 2v9t_B 157 MHLAQNPF 164 (220)
T ss_dssp EECCSSCE
T ss_pred EEeCCCCc
Confidence 88876654
No 107
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.47 E-value=4.1e-13 Score=121.53 Aligned_cols=139 Identities=19% Similarity=0.250 Sum_probs=119.6
Q ss_pred CcccccCCCCCCcccceEEEeecccccccCCCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcc-cCccc
Q 044595 168 GVGLVEAPDVTGWEKARRLSLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTS-LPLGI 246 (558)
Q Consensus 168 ~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~i 246 (558)
+......+.+..+++++.|++++|.+..++.+..+++|++|++++|.+.......+..+++|++|++++|.++. .|..+
T Consensus 53 ~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l 132 (197)
T 4ezg_A 53 NINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132 (197)
T ss_dssp SSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHH
T ss_pred CCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHH
Confidence 33444555678889999999999999888889999999999999999987433448899999999999999985 67889
Q ss_pred CCCCCCCeEeccCCC-CCCcchhhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCC
Q 044595 247 SKLVSLQHLDLSESD-IEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGH 310 (558)
Q Consensus 247 ~~L~~L~~L~l~~~~-l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 310 (558)
+.+++|++|++++|. +..+| .+..+++|++|++++| .+..++. +..+++|++|++.++..
T Consensus 133 ~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~~--l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 133 NTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYRG--IEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp TTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCTT--GGGCSSCCEEEECBC--
T ss_pred hhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChHH--hccCCCCCEEEeeCccc
Confidence 999999999999997 88988 7999999999999998 6777773 88999999999988754
No 108
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.47 E-value=3.4e-13 Score=123.26 Aligned_cols=106 Identities=33% Similarity=0.509 Sum_probs=57.5
Q ss_pred CCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcc-cCCCCCCCeEeccCCCCCCcchh-hhcCCCCcEEec
Q 044595 203 PHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLG-ISKLVSLQHLDLSESDIEELPGE-LKALVNLKCLDL 280 (558)
Q Consensus 203 ~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l 280 (558)
+++++|++++|.+..++...+..+++|++|++++|.++.+|.. ++.+++|++|++++|.++.+|.. ++.+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 4555555555555555555455555555555555555555432 34555555555555555555443 355555555555
Q ss_pred cCCCCCCcCchhhhcCCCCCcEEEeeccC
Q 044595 281 EYTGNLITIPRQLISNLSRLHVLRMFGAG 309 (558)
Q Consensus 281 ~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 309 (558)
++| .+..+|...++++++|++|++.++.
T Consensus 108 ~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (208)
T 2o6s_A 108 NTN-QLQSLPDGVFDKLTQLKDLRLYQNQ 135 (208)
T ss_dssp CSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCC-cCcccCHhHhccCCcCCEEECCCCc
Confidence 555 4445554444555555555555543
No 109
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.46 E-value=7.2e-14 Score=149.04 Aligned_cols=135 Identities=22% Similarity=0.266 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHcCCchhHHHHHHHHHcCCCChhhHHHHHHHHhccCCC-C----CCCccchhhhHHhcccCCCCcchhhh
Q 044595 4 ILQLAQAAARECDGLPLALITIGRAMACKKTPDEWIYDIEVLRTSSSQ-F----PGLGNEVYPLLKFSYDRLPSDTIKSC 78 (558)
Q Consensus 4 l~~i~~~iv~~c~GlPLai~~ig~~L~~~~~~~~W~~~~~~l~~~~~~-~----~~~~~~i~~~L~~SY~~L~~~~lk~c 78 (558)
+.+.+++|+++|+|+||||+.+|+.|+.+ ...|+.+++.+...... + ......+..++..||+.||++ .|.|
T Consensus 306 ~~~~~~~i~~~~~G~PLal~~~a~~l~~~--~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~-~~~~ 382 (591)
T 1z6t_A 306 LPEQAHSIIKECKGSPLVVSLIGALLRDF--PNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDY 382 (591)
T ss_dssp SCTHHHHHHHHHTTCHHHHHHHHHHHHHS--TTCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTT-THHH
T ss_pred ccHHHHHHHHHhCCCcHHHHHHHHHHhcC--chhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHH-HHHH
Confidence 35678999999999999999999999863 35799999988765322 1 111247899999999999996 9999
Q ss_pred hcccccCCCCCccCHHHHHHHHHHcCccccCCchhhHHhHHHHHHHHHHhcccccCC---CCceehhhHHHHHHHHH
Q 044595 79 LLYCSLYPEDYCISKEKLIDCWIGEGFLTERDRIGEQKEGYHILGILLHACLLEEGG---DGEVKMHDVIRDMAIWI 152 (558)
Q Consensus 79 fl~~~~fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~~~~L~~~~l~~~~~---~~~~~mhdl~~~~~~~~ 152 (558)
|+++|+||+|+.|+.+.++..|.++ .+.+..++++|++++|++... ...|+||+++++++...
T Consensus 383 l~~la~f~~~~~i~~~~l~~l~~~~-----------~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 383 YTDLSILQKDVKVPTKVLCILWDME-----------TEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp HHHGGGCCTTCCEEHHHHHHHHTCC-----------HHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHH
T ss_pred HHHccccCCCCccCHHHHHHHhccC-----------HHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhh
Confidence 9999999999999999999999653 235678899999999998653 24799999999999877
No 110
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.46 E-value=8.6e-13 Score=120.57 Aligned_cols=130 Identities=29% Similarity=0.467 Sum_probs=116.8
Q ss_pred cccceEEEeecccccccCC--CCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcc-cCCCCCCCeEe
Q 044595 180 WEKARRLSLMHNQITNLSE--IPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLG-ISKLVSLQHLD 256 (558)
Q Consensus 180 ~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~ 256 (558)
.+++++|++++|.+..++. +..+++|++|++++|.+..++...+..+++|++|++++|.++.+|.. ++.+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 4689999999999998765 67899999999999999999998889999999999999999988764 68999999999
Q ss_pred ccCCCCCCcchh-hhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCC
Q 044595 257 LSESDIEELPGE-LKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGH 310 (558)
Q Consensus 257 l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 310 (558)
+++|.++.+|.. +..+++|++|++++| .+..+|...+..+++|++|++.++..
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCe
Confidence 999999988765 688999999999998 67788887788999999999988754
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.45 E-value=3.6e-13 Score=124.14 Aligned_cols=147 Identities=18% Similarity=0.300 Sum_probs=88.5
Q ss_pred EEEeecccccccCCCCCCCCceEEEeecCCccccC-chhhhCCCCCcEEEcCCCCCcccCc-ccCCCCCCCeEeccCCCC
Q 044595 185 RLSLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIP-NDFFQFMPSLKVLNLSYSKLTSLPL-GISKLVSLQHLDLSESDI 262 (558)
Q Consensus 185 ~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~l 262 (558)
.++++++.+..+|.. -.+.++.|++++|.+..++ ...+..+++|++|++++|.++.++. .++++++|++|++++|.+
T Consensus 15 ~l~~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 93 (220)
T 2v70_A 15 TVDCSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL 93 (220)
T ss_dssp EEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EeEeCCCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCcc
Confidence 566666666665531 1234566777777766663 3446667777777777777666543 566677777777777766
Q ss_pred CCcchh-hhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhccCCCcce
Q 044595 263 EELPGE-LKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGLKSLEV 341 (558)
Q Consensus 263 ~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~ 341 (558)
+.+|.. ++.+++|++|++++| .+..+++..+..+++|++|++.++.... ..+..+..+++|+.
T Consensus 94 ~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~---------------~~~~~~~~l~~L~~ 157 (220)
T 2v70_A 94 ENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQITT---------------VAPGAFDTLHSLST 157 (220)
T ss_dssp CCCCGGGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSCCCC---------------BCTTTTTTCTTCCE
T ss_pred CccCHhHhcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCCcCCE---------------ECHHHhcCCCCCCE
Confidence 666543 666677777777766 4555544446667777777776654432 12234455666666
Q ss_pred EEEEEcc
Q 044595 342 ISFTLRS 348 (558)
Q Consensus 342 L~l~~~~ 348 (558)
|++..+.
T Consensus 158 L~L~~N~ 164 (220)
T 2v70_A 158 LNLLANP 164 (220)
T ss_dssp EECCSCC
T ss_pred EEecCcC
Confidence 6665443
No 112
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.44 E-value=5.2e-13 Score=123.07 Aligned_cols=130 Identities=20% Similarity=0.265 Sum_probs=115.1
Q ss_pred ccceEEEeecccccccCC---CCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCc-ccCCCCCCCeEe
Q 044595 181 EKARRLSLMHNQITNLSE---IPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPL-GISKLVSLQHLD 256 (558)
Q Consensus 181 ~~lr~L~l~~~~~~~l~~---~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~ 256 (558)
..++.|++++|.+..++. +..+++|++|++++|.+..+++..|..+++|++|++++|.++.+|. .++.+++|++|+
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence 467899999999998742 6789999999999999999998779999999999999999998865 589999999999
Q ss_pred ccCCCCCCc-chhhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCC
Q 044595 257 LSESDIEEL-PGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHN 311 (558)
Q Consensus 257 l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 311 (558)
+++|.++.+ |..+..+++|++|++++| .+..+++..+..+++|++|++.++...
T Consensus 112 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 112 LRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 999999987 567899999999999998 677775555899999999999887653
No 113
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.43 E-value=3e-13 Score=119.06 Aligned_cols=129 Identities=23% Similarity=0.290 Sum_probs=104.8
Q ss_pred ccceEEEeeccccc--ccCC-CCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcc-cCcccCCCCCCCeEe
Q 044595 181 EKARRLSLMHNQIT--NLSE-IPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTS-LPLGISKLVSLQHLD 256 (558)
Q Consensus 181 ~~lr~L~l~~~~~~--~l~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~i~~L~~L~~L~ 256 (558)
++++.|++++|.+. .++. +..+++|++|++++|.+..+ ..+..+++|++|++++|.++. +|..++.+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 67888999988887 6665 37788899999998888877 337888899999999998887 677777789999999
Q ss_pred ccCCCCCCcc--hhhhcCCCCcEEeccCCCCCCcCch---hhhcCCCCCcEEEeeccCCCc
Q 044595 257 LSESDIEELP--GELKALVNLKCLDLEYTGNLITIPR---QLISNLSRLHVLRMFGAGHNA 312 (558)
Q Consensus 257 l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~l~~lp~---~~i~~l~~L~~L~l~~~~~~~ 312 (558)
+++|.++.+| ..+..+++|++|++++| .+..+|. ..+..+++|++|++.++....
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 9999888876 67888889999999888 5667776 457888999999888876643
No 114
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.42 E-value=2.2e-13 Score=120.95 Aligned_cols=126 Identities=18% Similarity=0.248 Sum_probs=73.7
Q ss_pred cccceEEEeecccccccCCCCCCC-CceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCccc-CCCCCCCeEec
Q 044595 180 WEKARRLSLMHNQITNLSEIPTCP-HLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGI-SKLVSLQHLDL 257 (558)
Q Consensus 180 ~~~lr~L~l~~~~~~~l~~~~~~~-~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i-~~L~~L~~L~l 257 (558)
..+++.|++++|.+..++.+..+. +|++|++++|.+..++ .+..+++|++|++++|.++.+|..+ +.+++|++|++
T Consensus 18 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~--~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95 (176)
T ss_dssp TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred cCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCccc--ccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence 355666666666666555544433 6666666666666552 2555666666666666666655443 56666666666
Q ss_pred cCCCCCCcch--hhhcCCCCcEEeccCCCCCCcCchh---hhcCCCCCcEEEeecc
Q 044595 258 SESDIEELPG--ELKALVNLKCLDLEYTGNLITIPRQ---LISNLSRLHVLRMFGA 308 (558)
Q Consensus 258 ~~~~l~~lp~--~i~~l~~L~~L~l~~~~~l~~lp~~---~i~~l~~L~~L~l~~~ 308 (558)
++|.+..+|. .++.+++|++|++++| .+..+|.. +++.+++|+.|++.++
T Consensus 96 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 96 TNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CCCcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 6666666655 5566666666666665 34444442 3555666666665544
No 115
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.42 E-value=1.9e-12 Score=135.50 Aligned_cols=113 Identities=22% Similarity=0.373 Sum_probs=87.0
Q ss_pred cceEEEeecccccccCCCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcccCCCCCCCeEeccCCC
Q 044595 182 KARRLSLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHLDLSESD 261 (558)
Q Consensus 182 ~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~ 261 (558)
+++.|++++|.+..++.-- +++|++|++++|.+..+| ..+++|++|++++|.++.+|. +++ +|++|++++|.
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~ 131 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQ 131 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSC
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCc
Confidence 6778888888887776521 477888888888888777 336788888888888888877 655 88888888888
Q ss_pred CCCcchhhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCC
Q 044595 262 IEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGH 310 (558)
Q Consensus 262 l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 310 (558)
++.+|. .+++|++|++++| .+..+|. .+++|++|++.++..
T Consensus 132 l~~lp~---~l~~L~~L~Ls~N-~l~~lp~----~l~~L~~L~Ls~N~L 172 (571)
T 3cvr_A 132 LTMLPE---LPALLEYINADNN-QLTMLPE----LPTSLEVLSVRNNQL 172 (571)
T ss_dssp CSCCCC---CCTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCC
T ss_pred CCCCCC---cCccccEEeCCCC-ccCcCCC----cCCCcCEEECCCCCC
Confidence 888886 6788888888887 5666775 467788888876654
No 116
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.42 E-value=8.5e-13 Score=122.46 Aligned_cols=148 Identities=22% Similarity=0.290 Sum_probs=123.3
Q ss_pred ceEEEeecccccccCCCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcc-cCCCCCCCeEeccCCC
Q 044595 183 ARRLSLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLG-ISKLVSLQHLDLSESD 261 (558)
Q Consensus 183 lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 261 (558)
...++.+++.+..+|.. -.++|++|++++|.+..+++..+..+++|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus 21 ~~~v~c~~~~l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAG-IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TTEEECTTSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEeEccCCCcCccCCC-CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 44677777888877752 238999999999999999877799999999999999999988754 6899999999999999
Q ss_pred CCCcchh-hhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhccCCCcc
Q 044595 262 IEELPGE-LKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGLKSLE 340 (558)
Q Consensus 262 l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~ 340 (558)
++.+|.. +..+++|++|++++| .+..+|.. +..+++|++|++.++....+ ....+..+++|+
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~~~---------------~~~~~~~l~~L~ 162 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCN-KLTELPRG-IERLTHLTHLALDQNQLKSI---------------PHGAFDRLSSLT 162 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSS-CCCSCCTT-GGGCTTCSEEECCSSCCCCC---------------CTTTTTTCTTCC
T ss_pred CCccChhHhCcchhhCeEeccCC-cccccCcc-cccCCCCCEEECCCCcCCcc---------------CHHHHhCCCCCC
Confidence 9998765 688999999999998 68899987 79999999999998865431 123466788888
Q ss_pred eEEEEEcc
Q 044595 341 VISFTLRS 348 (558)
Q Consensus 341 ~L~l~~~~ 348 (558)
.|++..+.
T Consensus 163 ~L~l~~N~ 170 (229)
T 3e6j_A 163 HAYLFGNP 170 (229)
T ss_dssp EEECTTSC
T ss_pred EEEeeCCC
Confidence 88887654
No 117
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.42 E-value=3.2e-13 Score=116.26 Aligned_cols=123 Identities=25% Similarity=0.292 Sum_probs=87.8
Q ss_pred ccceEEEeeccccc--ccCC-CCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcc-cCcccCCCCCCCeEe
Q 044595 181 EKARRLSLMHNQIT--NLSE-IPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTS-LPLGISKLVSLQHLD 256 (558)
Q Consensus 181 ~~lr~L~l~~~~~~--~l~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~i~~L~~L~~L~ 256 (558)
++++.|++++|.+. .++. +..+++|++|++++|.+..+ ..+..+++|++|++++|.++. +|..++.+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 56777888877776 4543 46677778888877777766 336777778888888777776 666666677788888
Q ss_pred ccCCCCCCcc--hhhhcCCCCcEEeccCCCCCCcCch---hhhcCCCCCcEEEee
Q 044595 257 LSESDIEELP--GELKALVNLKCLDLEYTGNLITIPR---QLISNLSRLHVLRMF 306 (558)
Q Consensus 257 l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~l~~lp~---~~i~~l~~L~~L~l~ 306 (558)
+++|.++.+| ..++.+++|++|++++| .+..+|. ..++.+++|++|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 8777777664 66777777788887777 5556655 446777777777654
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.41 E-value=1.1e-13 Score=131.24 Aligned_cols=144 Identities=22% Similarity=0.287 Sum_probs=118.0
Q ss_pred cccceEEEeecccccccCCCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcccCCCCCCCeEeccC
Q 044595 180 WEKARRLSLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHLDLSE 259 (558)
Q Consensus 180 ~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~ 259 (558)
+.++..+.+..+.+.+++.+..+++|++|++++|.+..++. +..+++|++|++++|.++.+|. ++.+++|++|++++
T Consensus 18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCS
T ss_pred HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccchH--HhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCC
Confidence 45566667777777777777788999999999999998883 7889999999999999999877 99999999999999
Q ss_pred CCCCCcchhhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhccCCCc
Q 044595 260 SDIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGLKSL 339 (558)
Q Consensus 260 ~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L 339 (558)
|.++.+|... . .+|++|++++| .+..++. ++.+++|++|++.++.... +..+..+++|
T Consensus 95 N~l~~l~~~~-~-~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L~Ls~N~i~~-----------------~~~l~~l~~L 152 (263)
T 1xeu_A 95 NRLKNLNGIP-S-ACLSRLFLDNN-ELRDTDS--LIHLKNLEILSIRNNKLKS-----------------IVMLGFLSKL 152 (263)
T ss_dssp SCCSCCTTCC-C-SSCCEEECCSS-CCSBSGG--GTTCTTCCEEECTTSCCCB-----------------CGGGGGCTTC
T ss_pred CccCCcCccc-c-CcccEEEccCC-ccCCChh--hcCcccccEEECCCCcCCC-----------------ChHHccCCCC
Confidence 9999888543 3 89999999998 6777764 8899999999998886542 1356777888
Q ss_pred ceEEEEEcc
Q 044595 340 EVISFTLRS 348 (558)
Q Consensus 340 ~~L~l~~~~ 348 (558)
+.|++..+.
T Consensus 153 ~~L~L~~N~ 161 (263)
T 1xeu_A 153 EVLDLHGNE 161 (263)
T ss_dssp CEEECTTSC
T ss_pred CEEECCCCc
Confidence 877776544
No 119
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.40 E-value=8.2e-14 Score=139.04 Aligned_cols=257 Identities=13% Similarity=0.083 Sum_probs=164.4
Q ss_pred EEeecCCccccCchhhhCCCCCcEEEcCCCCCcccC-----cccCCCC-CCCeEeccCCCCCCc-chhhhcC-----CCC
Q 044595 208 FFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLP-----LGISKLV-SLQHLDLSESDIEEL-PGELKAL-----VNL 275 (558)
Q Consensus 208 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-----~~i~~L~-~L~~L~l~~~~l~~l-p~~i~~l-----~~L 275 (558)
+.++.+.+....+.++...++|++|++++|.++..+ ..+..++ +|++|++++|.+... +..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 567788888777776777777999999999998775 5677888 899999999988855 5556664 899
Q ss_pred cEEeccCCCCCCcCchhhh----cCC-CCCcEEEeeccCCCcccccccCCcccCCcchhHHHhccC-CCcceEEEEEccc
Q 044595 276 KCLDLEYTGNLITIPRQLI----SNL-SRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGL-KSLEVISFTLRSS 349 (558)
Q Consensus 276 ~~L~l~~~~~l~~lp~~~i----~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l-~~L~~L~l~~~~~ 349 (558)
++|++++| .+...+...+ ..+ ++|++|++.++...... .......+..+ ++|++|+++.+..
T Consensus 83 ~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~-----------~~~l~~~l~~~~~~L~~L~Ls~N~l 150 (362)
T 3goz_A 83 TSLNLSGN-FLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS-----------SSEFKQAFSNLPASITSLNLRGNDL 150 (362)
T ss_dssp CEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC-----------HHHHHHHHTTSCTTCCEEECTTSCG
T ss_pred cEEECcCC-cCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHH-----------HHHHHHHHHhCCCceeEEEccCCcC
Confidence 99999998 4555444323 344 88999999888653211 11223334443 4677776665433
Q ss_pred hh--HHHHhccccccccccceeeeeccCCCcccccchhhhh-hhhhhhhccccccceeEeccCCccccccc-ccccEEEE
Q 044595 350 HG--LQMILSSDQLRSCTRALSFQCFNDSTSLEVSALADLK-QLKMLRIARSEILEELKMDCAGEVRQFVF-HSLNKVEI 425 (558)
Q Consensus 350 ~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~l~~l~~~~~~~~~~~~~-~~L~~L~L 425 (558)
.. ...+. ..+..++ +|++|++++| .+...........- ..+ ++|+.|+|
T Consensus 151 ~~~~~~~l~-------------------------~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l-~~~~~~L~~L~L 203 (362)
T 3goz_A 151 GIKSSDELI-------------------------QILAAIPANVNSLNLRGN-NLASKNCAELAKFL-ASIPASVTSLDL 203 (362)
T ss_dssp GGSCHHHHH-------------------------HHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHH-HTSCTTCCEEEC
T ss_pred CHHHHHHHH-------------------------HHHhcCCccccEeeecCC-CCchhhHHHHHHHH-HhCCCCCCEEEC
Confidence 21 00110 0122333 7888888777 33322221110000 013 59999999
Q ss_pred cCCCCCCC-----ch-hhhc-cCCCceEEEecCchhHHHhhcCccCCcccccccCCCCcccceeeccCcc-------ccc
Q 044595 426 YGCSKLKD-----LT-FLVF-APNLKSIKVTGSHAMEAIISVGKFAEVPEVMANLNPFAKLQNLEVIGAI-------NLK 491 (558)
Q Consensus 426 ~~~~~l~~-----l~-~l~~-l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~-------~L~ 491 (558)
++| .+.+ ++ .+.. .++|+.|++++|..-...+ ..+......+++|++|++++|. .+.
T Consensus 204 s~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~--------~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~ 274 (362)
T 3goz_A 204 SAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL--------ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCK 274 (362)
T ss_dssp TTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH--------HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHH
T ss_pred CCC-CCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH--------HHHHHHHhcCCCccEEEeccCCccccCHHHHH
Confidence 999 5666 22 3444 4599999999986422111 1223455778999999999875 234
Q ss_pred ccccCCCCCCCcceEeeecCC
Q 044595 492 SIYWKPLRFPHLKTMSFFHCN 512 (558)
Q Consensus 492 ~~~~~~~~l~~L~~L~i~~C~ 512 (558)
.++.....+++|+.|++++++
T Consensus 275 ~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 275 ALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHHTTSTTCCEEEEECTTSCB
T ss_pred HHHHHhccCCceEEEecCCCc
Confidence 444445577889999998864
No 120
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.40 E-value=1.5e-13 Score=134.01 Aligned_cols=128 Identities=20% Similarity=0.144 Sum_probs=71.6
Q ss_pred cceEEEeecccccccC--CC--CCCCCceEEEeecCCccccCc----hhhhCCCCCcEEEcCCCCCcccC-cccCCCCCC
Q 044595 182 KARRLSLMHNQITNLS--EI--PTCPHLLTFFLNKNRFQMIPN----DFFQFMPSLKVLNLSYSKLTSLP-LGISKLVSL 252 (558)
Q Consensus 182 ~lr~L~l~~~~~~~l~--~~--~~~~~Lr~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L 252 (558)
+++.|++++|.+.... .+ ..+++|++|++++|.+..... ..+..+++|++|++++|.++.+| ..++.+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 4666666666655432 22 556666666666666654211 22335666666666666666543 456666666
Q ss_pred CeEeccCCCCCC---cchh--hhcCCCCcEEeccCCCCCCcCchh---hhcCCCCCcEEEeeccCC
Q 044595 253 QHLDLSESDIEE---LPGE--LKALVNLKCLDLEYTGNLITIPRQ---LISNLSRLHVLRMFGAGH 310 (558)
Q Consensus 253 ~~L~l~~~~l~~---lp~~--i~~l~~L~~L~l~~~~~l~~lp~~---~i~~l~~L~~L~l~~~~~ 310 (558)
++|++++|.+.. ++.. ++.+++|++|++++| .+..++.. .++.+++|++|+++++..
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l 236 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNSL 236 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSCC
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCCC
Confidence 666666665542 2222 245666666666666 44444432 245566666666666544
No 121
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.38 E-value=3.7e-12 Score=133.39 Aligned_cols=180 Identities=19% Similarity=0.248 Sum_probs=116.6
Q ss_pred CceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcccCCCCCCCeEeccCCCCCCcchhhhcCCCCcEEeccCC
Q 044595 204 HLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHLDLSESDIEELPGELKALVNLKCLDLEYT 283 (558)
Q Consensus 204 ~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~ 283 (558)
+++.|++++|.+..+|..+ +++|++|++++|.++.+| +.+++|++|++++|.++.+|. +.. +|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l---~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL---PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC---CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhH---cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC
Confidence 6778888888888777754 367888888888888777 456788888888888887776 544 7888888877
Q ss_pred CCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhccCCCcceEEEEEccchhHHHHhccccccc
Q 044595 284 GNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGLKSLEVISFTLRSSHGLQMILSSDQLRS 363 (558)
Q Consensus 284 ~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 363 (558)
.+..+|. .+++|++|++.++....+
T Consensus 131 -~l~~lp~----~l~~L~~L~Ls~N~l~~l-------------------------------------------------- 155 (571)
T 3cvr_A 131 -QLTMLPE----LPALLEYINADNNQLTML-------------------------------------------------- 155 (571)
T ss_dssp -CCSCCCC----CCTTCCEEECCSSCCSCC--------------------------------------------------
T ss_pred -cCCCCCC----cCccccEEeCCCCccCcC--------------------------------------------------
Confidence 5666665 567777777765543210
Q ss_pred cccceeeeeccCCCcccccchhhhhhhhhhhhccccccceeEeccCCcccccccccccEEEEcCCCCCCCchhhhccCCC
Q 044595 364 CTRALSFQCFNDSTSLEVSALADLKQLKMLRIARSEILEELKMDCAGEVRQFVFHSLNKVEIYGCSKLKDLTFLVFAPNL 443 (558)
Q Consensus 364 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~l~~l~~L 443 (558)
+ . .+++|+.|++++| .+..++. + .++|+.|+|+++ .++.+|.+.. +|
T Consensus 156 ----------------p--~--~l~~L~~L~Ls~N-~L~~lp~-l--------~~~L~~L~Ls~N-~L~~lp~~~~--~L 202 (571)
T 3cvr_A 156 ----------------P--E--LPTSLEVLSVRNN-QLTFLPE-L--------PESLEALDVSTN-LLESLPAVPV--RN 202 (571)
T ss_dssp ----------------C--C--CCTTCCEEECCSS-CCSCCCC-C--------CTTCCEEECCSS-CCSSCCCCC-----
T ss_pred ----------------C--C--cCCCcCEEECCCC-CCCCcch-h--------hCCCCEEECcCC-CCCchhhHHH--hh
Confidence 0 0 1244555555555 3333332 1 267888888888 6777665332 66
Q ss_pred -------ceEEEecCchhHHHhhcCccCCcccccccCCCCcccceeeccCccccccc
Q 044595 444 -------KSIKVTGSHAMEAIISVGKFAEVPEVMANLNPFAKLQNLEVIGAINLKSI 493 (558)
Q Consensus 444 -------~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~ 493 (558)
+.|++++|.. + .++..+..+++|++|++++++--..+
T Consensus 203 ~~~~~~L~~L~Ls~N~l-~------------~lp~~l~~l~~L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 203 HHSEETEIFFRCRENRI-T------------HIPENILSLDPTCTIILEDNPLSSRI 246 (571)
T ss_dssp -----CCEEEECCSSCC-C------------CCCGGGGGSCTTEEEECCSSSCCHHH
T ss_pred hcccccceEEecCCCcc-e------------ecCHHHhcCCCCCEEEeeCCcCCCcC
Confidence 8888888754 2 22334555888888888886533333
No 122
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.38 E-value=2.5e-12 Score=128.17 Aligned_cols=130 Identities=25% Similarity=0.385 Sum_probs=103.0
Q ss_pred ccceEEEeecccccccCC--CC-CCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCc-ccCCCCCCCeEe
Q 044595 181 EKARRLSLMHNQITNLSE--IP-TCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPL-GISKLVSLQHLD 256 (558)
Q Consensus 181 ~~lr~L~l~~~~~~~l~~--~~-~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~ 256 (558)
..++.|++++|.+..++. +. .+++|++|++++|.+..+++..|..+++|++|++++|.++.+|. .+..+.+|++|+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 467888888888887654 44 78888888888888888887778888888888888888887754 578888888888
Q ss_pred ccCCCCCCc-chhhhcCCCCcEEeccCCCCCCcCchhhh---cCCCCCcEEEeeccCCC
Q 044595 257 LSESDIEEL-PGELKALVNLKCLDLEYTGNLITIPRQLI---SNLSRLHVLRMFGAGHN 311 (558)
Q Consensus 257 l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~~i---~~l~~L~~L~l~~~~~~ 311 (558)
+++|.+..+ |..+..+++|++|++++| .+..+|...+ ..+++|++|++.++...
T Consensus 119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 888888866 456888888888888887 6777887755 56888888888877653
No 123
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.34 E-value=2.8e-12 Score=127.71 Aligned_cols=155 Identities=18% Similarity=0.222 Sum_probs=124.2
Q ss_pred eEEEeecccccccCCCCCCCCceEEEeecCCccccCchhhh-CCCCCcEEEcCCCCCcccC-cccCCCCCCCeEeccCCC
Q 044595 184 RRLSLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQ-FMPSLKVLNLSYSKLTSLP-LGISKLVSLQHLDLSESD 261 (558)
Q Consensus 184 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~ 261 (558)
+.++++++.+..+|.. -.+.++.|++++|.+..++...+. .+++|++|++++|.++.++ ..+.++++|++|+|++|.
T Consensus 21 ~~l~c~~~~l~~iP~~-~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 21 NILSCSKQQLPNVPQS-LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp TEEECCSSCCSSCCSS-CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCcc-CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 5788888888887752 235689999999999999988777 8999999999999999886 469999999999999999
Q ss_pred CCCcch-hhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhccCCCcc
Q 044595 262 IEELPG-ELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGLKSLE 340 (558)
Q Consensus 262 l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~ 340 (558)
++.+|. .+..+++|++|++++| .+..++...+..+++|++|++.++....+. ......+..+++|+
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~------------~~~~~~~~~l~~L~ 166 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQNQISRFP------------VELIKDGNKLPKLM 166 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCSCC------------GGGTC----CTTCC
T ss_pred CCcCCHHHhCCCcCCCEEECCCC-cccEECHHHhCCcccCCEEECCCCcCCeeC------------HHHhcCcccCCcCC
Confidence 998876 4889999999999998 677776666899999999999988765421 11222236788899
Q ss_pred eEEEEEccchhH
Q 044595 341 VISFTLRSSHGL 352 (558)
Q Consensus 341 ~L~l~~~~~~~~ 352 (558)
.|++..+....+
T Consensus 167 ~L~L~~N~l~~l 178 (361)
T 2xot_A 167 LLDLSSNKLKKL 178 (361)
T ss_dssp EEECCSSCCCCC
T ss_pred EEECCCCCCCcc
Confidence 999887766543
No 124
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.33 E-value=1.1e-11 Score=109.94 Aligned_cols=127 Identities=24% Similarity=0.398 Sum_probs=108.1
Q ss_pred ceEEEeecccccccCCCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcc-cCCCCCCCeEeccCCC
Q 044595 183 ARRLSLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLG-ISKLVSLQHLDLSESD 261 (558)
Q Consensus 183 lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 261 (558)
.+.+++.++.+..++. ...++|+.|++++|.+..++...+..+++|++|++++|.++.+|.. ++.+++|++|++++|.
T Consensus 9 ~~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TTEEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 3567777888777763 2347899999999999999988789999999999999999988754 6899999999999999
Q ss_pred CCCcchh-hhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCC
Q 044595 262 IEELPGE-LKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHN 311 (558)
Q Consensus 262 l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 311 (558)
++.+|.. +..+++|++|++++| .+..+|...+..+++|++|++.++...
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCee
Confidence 9988865 688999999999998 778888876788999999999887653
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.33 E-value=3.1e-12 Score=113.48 Aligned_cols=142 Identities=15% Similarity=0.192 Sum_probs=113.8
Q ss_pred ccCCCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcccCCCCCCCeEeccCCCCCCcchhh-hcCC
Q 044595 195 NLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHLDLSESDIEELPGEL-KALV 273 (558)
Q Consensus 195 ~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i-~~l~ 273 (558)
..+.+..+++|+.|++++|.+..++. +....++|++|++++|.++.+ ..++.+++|++|++++|.++.+|..+ +.++
T Consensus 11 ~~~~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 11 QAAQYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp TSCEEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred HHHhcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence 33455678899999999999998864 344445999999999999988 67999999999999999999998665 8999
Q ss_pred CCcEEeccCCCCCCcCch-hhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhccCCCcceEEEEEccchh
Q 044595 274 NLKCLDLEYTGNLITIPR-QLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGLKSLEVISFTLRSSHG 351 (558)
Q Consensus 274 ~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~ 351 (558)
+|++|++++| .+..+|. ..++.+++|++|++.++..... .......+..+++|+.|++..+....
T Consensus 89 ~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~------------~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 89 DLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNPVTNK------------KHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp TCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGGS------------TTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCCCCCc------------HhHHHHHHHHCCccceeCCCcCCHHH
Confidence 9999999998 6788886 2378999999999998865421 11122347788899999888766543
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.32 E-value=1.3e-11 Score=110.99 Aligned_cols=124 Identities=19% Similarity=0.333 Sum_probs=105.0
Q ss_pred eEEEeecccccccCCCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccC-cccCCCCCCCeEeccCCCC
Q 044595 184 RRLSLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLP-LGISKLVSLQHLDLSESDI 262 (558)
Q Consensus 184 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~l 262 (558)
+.++++++.+..+|.. -.+++++|++++|.+..+|.. +..+++|++|++++|.++.++ ..+.++++|++|++++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~~-~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPKE-LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCGG-GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHHH-hhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 4677888888877652 236899999999999988854 888999999999999999875 4689999999999999999
Q ss_pred CCcch-hhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCC
Q 044595 263 EELPG-ELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGH 310 (558)
Q Consensus 263 ~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 310 (558)
+.+|. .+..+++|++|++++| .+..+|...+..+++|++|++.++..
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCCe
Confidence 98865 5889999999999998 78888887788899999999987754
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.31 E-value=3.6e-12 Score=109.60 Aligned_cols=129 Identities=19% Similarity=0.241 Sum_probs=104.8
Q ss_pred CCCCceEEEeecCCcc--ccCchhhhCCCCCcEEEcCCCCCcccCcccCCCCCCCeEeccCCCCCC-cchhhhcCCCCcE
Q 044595 201 TCPHLLTFFLNKNRFQ--MIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHLDLSESDIEE-LPGELKALVNLKC 277 (558)
Q Consensus 201 ~~~~Lr~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~-lp~~i~~l~~L~~ 277 (558)
..++++.|++++|.+. .+|.. +..+++|++|++++|.++.+ ..++.+++|++|++++|.++. +|..++.+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGL-TDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSC-CTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHH-HhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3478999999999998 67764 78899999999999999988 779999999999999999997 8888888999999
Q ss_pred EeccCCCCCCcCch-hhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhccCCCcceEEE
Q 044595 278 LDLEYTGNLITIPR-QLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGLKSLEVISF 344 (558)
Q Consensus 278 L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l 344 (558)
|++++| .+..+|. ..++.+++|++|++.++..... .......+..+++|+.|++
T Consensus 93 L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~------------~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 93 LNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCEVTNL------------NDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp EECTTS-CCCSHHHHGGGGGCTTCCEEECTTCGGGGS------------TTHHHHHHHHCTTCCEETT
T ss_pred EECCCC-cCCChHHHHHHhhCCCCCEEeCcCCcccch------------HHHHHHHHHHCCCcccccC
Confidence 999998 5777652 3389999999999998865421 1111245777788887764
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.31 E-value=1.7e-11 Score=107.75 Aligned_cols=114 Identities=27% Similarity=0.317 Sum_probs=102.7
Q ss_pred CCCcccceEEEeecccccccCCCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccC--cccCCCCCCCe
Q 044595 177 VTGWEKARRLSLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLP--LGISKLVSLQH 254 (558)
Q Consensus 177 ~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp--~~i~~L~~L~~ 254 (558)
+..+++++.|++++|.+..+..+..+++|++|++++|.+...++..+..+++|++|++++|.++.+| ..++.+++|++
T Consensus 45 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~ 124 (168)
T 2ell_A 45 TAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKS 124 (168)
T ss_dssp CGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCE
T ss_pred HHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCE
Confidence 4778999999999999999888899999999999999999856666788999999999999999876 78999999999
Q ss_pred EeccCCCCCCcch----hhhcCCCCcEEeccCCCCCCcCch
Q 044595 255 LDLSESDIEELPG----ELKALVNLKCLDLEYTGNLITIPR 291 (558)
Q Consensus 255 L~l~~~~l~~lp~----~i~~l~~L~~L~l~~~~~l~~lp~ 291 (558)
|++++|.+..+|. .+..+++|++|++++| ....+|.
T Consensus 125 L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~ 164 (168)
T 2ell_A 125 LDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAPD 164 (168)
T ss_dssp EECCSSGGGTSTTHHHHHHTTCSSCCEETTEET-TSCBCCS
T ss_pred EEeeCCcCcchHHHHHHHHHhCccCcEecCCCC-Chhhccc
Confidence 9999999998886 7899999999999998 5666664
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.30 E-value=8e-12 Score=112.44 Aligned_cols=126 Identities=23% Similarity=0.334 Sum_probs=105.1
Q ss_pred eEEEeecccccccCCCCCCCCceEEEeecCCccccCch-hhhCCCCCcEEEcCCCCCccc-CcccCCCCCCCeEeccCCC
Q 044595 184 RRLSLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPND-FFQFMPSLKVLNLSYSKLTSL-PLGISKLVSLQHLDLSESD 261 (558)
Q Consensus 184 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~ 261 (558)
+.++++++.+..+|.. -..++++|++++|.+..+++. .+..+++|++|++++|.++.+ |..++++++|++|++++|.
T Consensus 11 ~~l~~s~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRD-IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcCcCccC-CCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 5788888888887752 234899999999999988864 578999999999999999977 7789999999999999999
Q ss_pred CCCcchh-hhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCC
Q 044595 262 IEELPGE-LKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHN 311 (558)
Q Consensus 262 l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 311 (558)
++.++.. +..+++|++|++++| .+..+++..++.+++|++|++.++...
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCccCHHHhcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 9977654 888999999999998 566665455889999999999877653
No 130
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.28 E-value=7.1e-12 Score=131.81 Aligned_cols=104 Identities=20% Similarity=0.284 Sum_probs=89.2
Q ss_pred CceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcccCCCCCCCeEeccCCCCCCcchhhhcCCCCcEEeccCC
Q 044595 204 HLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHLDLSESDIEELPGELKALVNLKCLDLEYT 283 (558)
Q Consensus 204 ~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~ 283 (558)
.|++|++++|.+..+|. +..+++|++|++++|.++.+|..++++++|++|++++|.++.+| .++.+++|++|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcC--ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC
Confidence 48889999999988876 78899999999999999999989999999999999999998888 8889999999999988
Q ss_pred CCCCcC--chhhhcCCCCCcEEEeeccCCCc
Q 044595 284 GNLITI--PRQLISNLSRLHVLRMFGAGHNA 312 (558)
Q Consensus 284 ~~l~~l--p~~~i~~l~~L~~L~l~~~~~~~ 312 (558)
.+..+ |.. ++.+++|++|++.++....
T Consensus 519 -~l~~~~~p~~-l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 519 -RLQQSAAIQP-LVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp -CCCSSSTTGG-GGGCTTCCEEECTTSGGGG
T ss_pred -CCCCCCCcHH-HhcCCCCCEEEecCCcCCC
Confidence 66666 555 8889999999998876543
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.22 E-value=1.5e-11 Score=133.56 Aligned_cols=110 Identities=27% Similarity=0.301 Sum_probs=96.1
Q ss_pred CCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcccCCCCCCCeEeccCCCCCCcchhhhcCCCCcEE
Q 044595 199 IPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHLDLSESDIEELPGELKALVNLKCL 278 (558)
Q Consensus 199 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L 278 (558)
+..++.|+.|++++|.+..+|..++ .+++|++|+|++|.++.+|..+++|++|++|+|++|.++.+|..++.|++|++|
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF 298 (727)
T ss_dssp --CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred hccCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence 5678889999999999998888754 789999999999999999988999999999999999999999999999999999
Q ss_pred eccCCCCCCcCchhhhcCCCCCcEEEeeccCCC
Q 044595 279 DLEYTGNLITIPRQLISNLSRLHVLRMFGAGHN 311 (558)
Q Consensus 279 ~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 311 (558)
++++| .+..+|.. ++++++|++|++.++...
T Consensus 299 ~L~~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 299 YFFDN-MVTTLPWE-FGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp ECCSS-CCCCCCSS-TTSCTTCCCEECTTSCCC
T ss_pred ECCCC-CCCccChh-hhcCCCccEEeCCCCccC
Confidence 99988 67888887 889999999999888665
No 132
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.22 E-value=3.2e-11 Score=126.83 Aligned_cols=137 Identities=22% Similarity=0.260 Sum_probs=108.1
Q ss_pred CCCCCceEEE-eecCCccccCchh-----hh--CCCCCcEEEcCCCCCcccCcccCCCCCCCeEeccCCCCCCcchhhhc
Q 044595 200 PTCPHLLTFF-LNKNRFQMIPNDF-----FQ--FMPSLKVLNLSYSKLTSLPLGISKLVSLQHLDLSESDIEELPGELKA 271 (558)
Q Consensus 200 ~~~~~Lr~L~-l~~~~~~~~~~~~-----~~--~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~ 271 (558)
..+++|+.|+ ++.+.+..++.-. +. ....|++|++++|.++.+|. ++.+++|++|++++|.++.+|..++.
T Consensus 406 ~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~ 484 (567)
T 1dce_A 406 QYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAA 484 (567)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGG
T ss_pred HHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhc
Confidence 3467777777 5555443333211 11 11359999999999999987 99999999999999999999999999
Q ss_pred CCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhccCCCcceEEEEEccchh
Q 044595 272 LVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGLKSLEVISFTLRSSHG 351 (558)
Q Consensus 272 l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~ 351 (558)
+++|++|++++| .+..+| . ++.+++|++|++.++..... ..+..++.+++|+.|++..+...+
T Consensus 485 l~~L~~L~Ls~N-~l~~lp-~-l~~l~~L~~L~Ls~N~l~~~--------------~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 485 LRCLEVLQASDN-ALENVD-G-VANLPRLQELLLCNNRLQQS--------------AAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp CTTCCEEECCSS-CCCCCG-G-GTTCSSCCEEECCSSCCCSS--------------STTGGGGGCTTCCEEECTTSGGGG
T ss_pred CCCCCEEECCCC-CCCCCc-c-cCCCCCCcEEECCCCCCCCC--------------CCcHHHhcCCCCCEEEecCCcCCC
Confidence 999999999998 677888 4 89999999999998866421 116778899999999999988876
Q ss_pred HHH
Q 044595 352 LQM 354 (558)
Q Consensus 352 ~~~ 354 (558)
.+.
T Consensus 548 ~~~ 550 (567)
T 1dce_A 548 EEG 550 (567)
T ss_dssp SSS
T ss_pred Ccc
Confidence 643
No 133
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.21 E-value=1.7e-11 Score=110.27 Aligned_cols=125 Identities=17% Similarity=0.261 Sum_probs=105.0
Q ss_pred eEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcc--cCCCCCCCeEeccCCCCCCc-chhhhcCCCCcEEeccC
Q 044595 206 LTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLG--ISKLVSLQHLDLSESDIEEL-PGELKALVNLKCLDLEY 282 (558)
Q Consensus 206 r~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~--i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~ 282 (558)
++++++++.+..+|..+. .+|++|++++|.++.++.. ++.+++|++|++++|.++.+ |..++.+++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 789999999999998643 3899999999999988764 89999999999999999977 67899999999999999
Q ss_pred CCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhccCCCcceEEEEEccc
Q 044595 283 TGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGLKSLEVISFTLRSS 349 (558)
Q Consensus 283 ~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~ 349 (558)
| .+..++...++.+++|++|++.++.... ..+..+..+++|+.|++..+..
T Consensus 88 N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~---------------~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 88 N-KIKEISNKMFLGLHQLKTLNLYDNQISC---------------VMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp C-CCCEECSSSSTTCTTCCEEECCSSCCCE---------------ECTTSSTTCTTCCEEECTTCCB
T ss_pred C-cCCccCHHHhcCCCCCCEEECCCCcCCe---------------eCHHHhhcCCCCCEEEeCCCCc
Confidence 8 6777777668899999999999886642 2344567788888888876543
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.21 E-value=3.9e-11 Score=107.89 Aligned_cols=125 Identities=20% Similarity=0.303 Sum_probs=105.5
Q ss_pred eEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcccCCCCCCCeEeccCCCCCCcch-hhhcCCCCcEEeccCCC
Q 044595 206 LTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHLDLSESDIEELPG-ELKALVNLKCLDLEYTG 284 (558)
Q Consensus 206 r~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~ 284 (558)
++++++++.+..+|..+ ..+|++|++++|.++.+|..+.++++|++|++++|.++.++. .+..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N- 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN- 88 (193)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred CEEEcCCCCCCcCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-
Confidence 57889999999999764 368999999999999999999999999999999999998875 5899999999999998
Q ss_pred CCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhccCCCcceEEEEEccc
Q 044595 285 NLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGLKSLEVISFTLRSS 349 (558)
Q Consensus 285 ~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~ 349 (558)
.+..++...++.+++|++|++.++....+ ....+..+++|+.|++..+..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~---------------~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVV---------------PEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBC---------------CTTTTTTCTTCCEEECCSSCE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCee---------------ChhhhhcCccccEEEeCCCCe
Confidence 68888877789999999999998876432 122356778888888876543
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.16 E-value=4.2e-11 Score=129.97 Aligned_cols=151 Identities=22% Similarity=0.266 Sum_probs=97.5
Q ss_pred ccceEEEeecccccccCC-CCCCCCceEE-----EeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcccCCCCCCCe
Q 044595 181 EKARRLSLMHNQITNLSE-IPTCPHLLTF-----FLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQH 254 (558)
Q Consensus 181 ~~lr~L~l~~~~~~~l~~-~~~~~~Lr~L-----~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~ 254 (558)
..+++|++..+.+...+. ......|+.+ ++.+|.+. +++..+..+..|++|+|++|.+..+|..+..+++|++
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~ 251 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTR 251 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCE
Confidence 567888888777766432 2222223332 23344444 4555688999999999999999999999999999999
Q ss_pred EeccCCCCCCcchhhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhc
Q 044595 255 LDLSESDIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELL 334 (558)
Q Consensus 255 L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 334 (558)
|+|++|.++.+|..++.+++|++|+|++| .+..+|.. +++|++|++|++.++.... .+..++
T Consensus 252 L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~~----------------lp~~~~ 313 (727)
T 4b8c_D 252 LYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAE-LGSCFQLKYFYFFDNMVTT----------------LPWEFG 313 (727)
T ss_dssp CBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSS-GGGGTTCSEEECCSSCCCC----------------CCSSTT
T ss_pred EEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccChh-hcCCCCCCEEECCCCCCCc----------------cChhhh
Confidence 99999999999999999999999999998 67799987 8999999999999886532 344588
Q ss_pred cCCCcceEEEEEccch
Q 044595 335 GLKSLEVISFTLRSSH 350 (558)
Q Consensus 335 ~l~~L~~L~l~~~~~~ 350 (558)
.+++|+.|++..+...
T Consensus 314 ~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 314 NLCNLQFLGVEGNPLE 329 (727)
T ss_dssp SCTTCCCEECTTSCCC
T ss_pred cCCCccEEeCCCCccC
Confidence 8999999999877765
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.15 E-value=2.5e-10 Score=101.09 Aligned_cols=106 Identities=28% Similarity=0.433 Sum_probs=95.7
Q ss_pred cccceEEEeecccccccCC--CCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcc-cCCCCCCCeEe
Q 044595 180 WEKARRLSLMHNQITNLSE--IPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLG-ISKLVSLQHLD 256 (558)
Q Consensus 180 ~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~ 256 (558)
.++++.|++++|.+..++. +..+++|++|++++|.+..+++..+..+++|++|++++|.++.+|.. ++.+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 4789999999999998764 67899999999999999999988889999999999999999988764 68999999999
Q ss_pred ccCCCCCCcchh-hhcCCCCcEEeccCCCC
Q 044595 257 LSESDIEELPGE-LKALVNLKCLDLEYTGN 285 (558)
Q Consensus 257 l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~ 285 (558)
+++|.++.+|.. +..+++|++|++++|..
T Consensus 107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence 999999999876 47899999999999843
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.11 E-value=3.6e-10 Score=99.68 Aligned_cols=101 Identities=25% Similarity=0.366 Sum_probs=56.1
Q ss_pred eEEEeecCCccccCchhhhCCCCCcEEEcCCCCCccc-CcccCCCCCCCeEeccCCCCCCcchh-hhcCCCCcEEeccCC
Q 044595 206 LTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSL-PLGISKLVSLQHLDLSESDIEELPGE-LKALVNLKCLDLEYT 283 (558)
Q Consensus 206 r~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~ 283 (558)
+.++++++.+..+|..+ ..+|++|++++|.++.+ |..++++++|++|++++|.++.+|.. +..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 34555555555555442 25556666666655554 34455566666666666666555544 355566666666655
Q ss_pred CCCCcCchhhhcCCCCCcEEEeeccCC
Q 044595 284 GNLITIPRQLISNLSRLHVLRMFGAGH 310 (558)
Q Consensus 284 ~~l~~lp~~~i~~l~~L~~L~l~~~~~ 310 (558)
.+..+|...++.+++|++|++.++..
T Consensus 92 -~l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 92 -HLKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp -CCCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred -ccceeCHHHhccccCCCEEEeCCCCc
Confidence 45555554455566666666655543
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.11 E-value=2.6e-10 Score=100.58 Aligned_cols=106 Identities=21% Similarity=0.329 Sum_probs=92.1
Q ss_pred eEEEeecccccccCCCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcc-cCCCCCCCeEeccCCCC
Q 044595 184 RRLSLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLG-ISKLVSLQHLDLSESDI 262 (558)
Q Consensus 184 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~l 262 (558)
+.++++++.+..+|.- -.++|++|++++|.+..+++..+..+++|++|++++|.++.+|.. +.++++|++|++++|.+
T Consensus 15 ~~l~~~~n~l~~iP~~-~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAG-IPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp SEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cEEEeCCCCCCccCCC-cCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence 5788999999888752 238999999999999999887799999999999999999999876 58999999999999999
Q ss_pred CCcchh-hhcCCCCcEEeccCCCCCCcCch
Q 044595 263 EELPGE-LKALVNLKCLDLEYTGNLITIPR 291 (558)
Q Consensus 263 ~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~ 291 (558)
+.+|.. +..+++|++|++++| .+...+.
T Consensus 94 ~~l~~~~~~~l~~L~~L~L~~N-~~~c~~~ 122 (174)
T 2r9u_A 94 KSIPRGAFDNLKSLTHIYLYNN-PWDCECR 122 (174)
T ss_dssp CCCCTTTTTTCTTCSEEECCSS-CBCTTBG
T ss_pred ceeCHHHhccccCCCEEEeCCC-Ccccccc
Confidence 999876 889999999999998 4554443
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.10 E-value=1.8e-12 Score=117.41 Aligned_cols=108 Identities=20% Similarity=0.241 Sum_probs=77.6
Q ss_pred CCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcccCCCCCCCeEeccCCCCCCcchhhhcCCCCcEE
Q 044595 199 IPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHLDLSESDIEELPGELKALVNLKCL 278 (558)
Q Consensus 199 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L 278 (558)
+..+++|++|++++|.+..+| .+..+++|++|++++|.++.+|..++.+++|++|++++|.++.+| .++.+++|++|
T Consensus 44 ~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L 120 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVL 120 (198)
T ss_dssp HHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEE
T ss_pred HhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEE
Confidence 455677777777777777766 367777788888887777777776666777888888777777776 57777777888
Q ss_pred eccCCCCCCcCch-hhhcCCCCCcEEEeeccCC
Q 044595 279 DLEYTGNLITIPR-QLISNLSRLHVLRMFGAGH 310 (558)
Q Consensus 279 ~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~ 310 (558)
++++| .+..++. ..+..+++|++|++.++..
T Consensus 121 ~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 121 YMSNN-KITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp EESEE-ECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred ECCCC-cCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 87776 4555553 3367777777777776643
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.10 E-value=2.7e-10 Score=100.10 Aligned_cols=102 Identities=25% Similarity=0.360 Sum_probs=72.3
Q ss_pred ceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCccc-CcccCCCCCCCeEeccCCCCCCcchh-hhcCCCCcEEeccC
Q 044595 205 LLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSL-PLGISKLVSLQHLDLSESDIEELPGE-LKALVNLKCLDLEY 282 (558)
Q Consensus 205 Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~ 282 (558)
.+.++++++.+..+|..+ .++|++|++++|.++.+ |..++++++|++|++++|.++.+|.. +..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 356677777777777653 36777777777777766 55577777777777777777777665 46777777777777
Q ss_pred CCCCCcCchhhhcCCCCCcEEEeeccCC
Q 044595 283 TGNLITIPRQLISNLSRLHVLRMFGAGH 310 (558)
Q Consensus 283 ~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 310 (558)
| .+..+|...++.+++|++|++.++..
T Consensus 88 N-~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 88 N-QLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred C-ccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 6 56677766577777777777776654
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.06 E-value=5.6e-10 Score=98.06 Aligned_cols=101 Identities=20% Similarity=0.332 Sum_probs=89.3
Q ss_pred ceEEEeecccccccCCCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcc-cCCCCCCCeEeccCCC
Q 044595 183 ARRLSLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLG-ISKLVSLQHLDLSESD 261 (558)
Q Consensus 183 lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 261 (558)
.+.++++++.+..+|.- -.++|++|++++|.+..+++..|..+++|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus 11 ~~~l~~s~n~l~~ip~~-~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTG-IPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TTEEECTTSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEeCCCCcCccCcc-CCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 46788999998888752 248899999999999999888799999999999999999988765 5899999999999999
Q ss_pred CCCcchh-hhcCCCCcEEeccCCC
Q 044595 262 IEELPGE-LKALVNLKCLDLEYTG 284 (558)
Q Consensus 262 l~~lp~~-i~~l~~L~~L~l~~~~ 284 (558)
++.+|.. +..+++|++|++++|.
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCC
Confidence 9999875 8899999999999983
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.03 E-value=4.4e-12 Score=114.80 Aligned_cols=127 Identities=27% Similarity=0.314 Sum_probs=108.3
Q ss_pred CCCcccceEEEeecccccccCCCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcccCCCCCCCeEe
Q 044595 177 VTGWEKARRLSLMHNQITNLSEIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHLD 256 (558)
Q Consensus 177 ~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~ 256 (558)
+..+++++.|++++|.+..++.+..+++|++|++++|.+..+|.. +..+++|++|++++|.++.+| .++.+++|++|+
T Consensus 44 ~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~-~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~ 121 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENL-DAVADTLEELWISYNQIASLS-GIEKLVNLRVLY 121 (198)
T ss_dssp HHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSH-HHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEE
T ss_pred HhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccch-hhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEE
Confidence 445678999999999999988888899999999999999998875 677899999999999999987 688999999999
Q ss_pred ccCCCCCCcch--hhhcCCCCcEEeccCCCCCCcCc---------hhhhcCCCCCcEEEe
Q 044595 257 LSESDIEELPG--ELKALVNLKCLDLEYTGNLITIP---------RQLISNLSRLHVLRM 305 (558)
Q Consensus 257 l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~l~~lp---------~~~i~~l~~L~~L~l 305 (558)
+++|.+..+|. .+..+++|++|++++|......| ..++..+++|++|+.
T Consensus 122 l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~ 181 (198)
T 1ds9_A 122 MSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDG 181 (198)
T ss_dssp ESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECC
T ss_pred CCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECC
Confidence 99999998875 78999999999999984222222 234678999999873
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.91 E-value=4.7e-09 Score=102.92 Aligned_cols=100 Identities=13% Similarity=0.047 Sum_probs=68.3
Q ss_pred hhhhhhhhhhccccccceeEeccCCcccccccccccEEEEcCCCCCCCch--hhhccCCCc-eEEEecCchhHHHhhcCc
Q 044595 386 DLKQLKMLRIARSEILEELKMDCAGEVRQFVFHSLNKVEIYGCSKLKDLT--FLVFAPNLK-SIKVTGSHAMEAIISVGK 462 (558)
Q Consensus 386 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~--~l~~l~~L~-~L~l~~c~~l~~~~~~~~ 462 (558)
.+++|+.+++.++ .+..++...... +.+|++|+|.+. ++.++ .+..+++|+ .+.+.+ .++.+..
T Consensus 224 ~~~~L~~l~L~~n-~i~~I~~~aF~~-----~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~--- 290 (329)
T 3sb4_A 224 YMPNLVSLDISKT-NATTIPDFTFAQ-----KKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEF--- 290 (329)
T ss_dssp HCTTCCEEECTTB-CCCEECTTTTTT-----CTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECT---
T ss_pred hcCCCeEEECCCC-CcceecHhhhhC-----CCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEch---
Confidence 3678888888866 477777765553 788999988774 65554 367788888 888876 3333322
Q ss_pred cCCcccccccCCCCcccceeeccCcccccccccC-CCCCCCcceEe
Q 044595 463 FAEVPEVMANLNPFAKLQNLEVIGAINLKSIYWK-PLRFPHLKTMS 507 (558)
Q Consensus 463 ~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~-~~~l~~L~~L~ 507 (558)
....++++|+.+++.+ .+++.++.. ...+++|+.++
T Consensus 291 --------~aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 291 --------GAFMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp --------TTTTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred --------hhhhCCccCCEEEeCC-CccCccchhhhcCCcchhhhc
Confidence 3567788999999865 567777653 23456666664
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.84 E-value=1.2e-08 Score=100.09 Aligned_cols=57 Identities=16% Similarity=0.137 Sum_probs=34.6
Q ss_pred chhhhhhhh-hhhhccccccceeEeccCCcccccccccccEEEEcCCCCCCCch--hhhccCCCceEE
Q 044595 383 ALADLKQLK-MLRIARSEILEELKMDCAGEVRQFVFHSLNKVEIYGCSKLKDLT--FLVFAPNLKSIK 447 (558)
Q Consensus 383 ~l~~l~~L~-~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~--~l~~l~~L~~L~ 447 (558)
++..+++|+ .+.+.+ .++.++...... +++|+.+++.+. .++.++ .+..+++|+.+.
T Consensus 268 aF~~~~~L~~~l~l~~--~l~~I~~~aF~~-----c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 268 VFSNCGRLAGTLELPA--SVTAIEFGAFMG-----CDNLRYVLATGD-KITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TTTTCTTCCEEEEECT--TCCEECTTTTTT-----CTTEEEEEECSS-CCCEECTTTTCTTCCCCEEE
T ss_pred HhhCChhccEEEEEcc--cceEEchhhhhC-----CccCCEEEeCCC-ccCccchhhhcCCcchhhhc
Confidence 355666666 666655 455565554442 677777777665 555544 355677777664
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.79 E-value=1.3e-08 Score=100.60 Aligned_cols=98 Identities=18% Similarity=0.209 Sum_probs=63.1
Q ss_pred EEeecc-cccccCCCCCCCCceEEEeec-CCccccCchhhhCCCCCcEEEcCCCCCcccC-cccCCCCCCCeEeccCCCC
Q 044595 186 LSLMHN-QITNLSEIPTCPHLLTFFLNK-NRFQMIPNDFFQFMPSLKVLNLSYSKLTSLP-LGISKLVSLQHLDLSESDI 262 (558)
Q Consensus 186 L~l~~~-~~~~l~~~~~~~~Lr~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~l 262 (558)
++.+++ .+..+|.+..+++|+.|++++ |.+..+++..|..+.+|++|+|++|.++.+| ..+++|++|++|+|++|.+
T Consensus 13 v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred EEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence 345555 566665566666677777764 7777776666667777777777777776553 3456677777777777777
Q ss_pred CCcchhhhcCCCCcEEeccCC
Q 044595 263 EELPGELKALVNLKCLDLEYT 283 (558)
Q Consensus 263 ~~lp~~i~~l~~L~~L~l~~~ 283 (558)
+.+|..+....+|+.|++.+|
T Consensus 93 ~~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 93 ESLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp SCCCSTTTCSCCCCEEECCSS
T ss_pred ceeCHHHcccCCceEEEeeCC
Confidence 766655444334777777665
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.73 E-value=2.8e-07 Score=92.40 Aligned_cols=103 Identities=18% Similarity=0.197 Sum_probs=71.0
Q ss_pred CCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccC-cccCCCCCCCeEeccCCCCCCcchhhhcCCCCcE
Q 044595 199 IPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLP-LGISKLVSLQHLDLSESDIEELPGELKALVNLKC 277 (558)
Q Consensus 199 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~ 277 (558)
+..+ +|+.+.+..+ +..++...|.+. +|+.+.+.. .++.++ ..+.++.+|+.+++.++.++.+|...-...+|+.
T Consensus 132 F~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~ 207 (401)
T 4fdw_A 132 FRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEE 207 (401)
T ss_dssp TTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSE
T ss_pred cccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCE
Confidence 4443 5777777654 667777667664 577887775 566553 4577778888888877777777766555677888
Q ss_pred EeccCCCCCCcCchhhhcCCCCCcEEEeec
Q 044595 278 LDLEYTGNLITIPRQLISNLSRLHVLRMFG 307 (558)
Q Consensus 278 L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~ 307 (558)
+.+.. .+..++...+.++++|+.+.+..
T Consensus 208 l~lp~--~l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 208 VLLPV--TLKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp EECCT--TCCEECTTTTTTCTTCCCEECCT
T ss_pred EEeCC--chheehhhHhhCCCCCCEEecCC
Confidence 87764 36777777677777777777653
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.71 E-value=3.4e-08 Score=97.55 Aligned_cols=102 Identities=17% Similarity=0.228 Sum_probs=87.8
Q ss_pred eEEEeecC-CccccCchhhhCCCCCcEEEcCC-CCCcccC-cccCCCCCCCeEeccCCCCCCcch-hhhcCCCCcEEecc
Q 044595 206 LTFFLNKN-RFQMIPNDFFQFMPSLKVLNLSY-SKLTSLP-LGISKLVSLQHLDLSESDIEELPG-ELKALVNLKCLDLE 281 (558)
Q Consensus 206 r~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~-~~l~~lp-~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~ 281 (558)
..++.+++ .+..+|. +..+.+|++|+|++ |.++.+| ..+++|.+|++|+|++|.++.+|. .++.|++|++|+|+
T Consensus 11 ~~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 34678887 8999998 78899999999996 9999887 579999999999999999998865 57999999999999
Q ss_pred CCCCCCcCchhhhcCCCCCcEEEeeccCCC
Q 044595 282 YTGNLITIPRQLISNLSRLHVLRMFGAGHN 311 (558)
Q Consensus 282 ~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 311 (558)
+| .+..+|...+..++ |+.|++.++...
T Consensus 89 ~N-~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FN-ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SS-CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CC-ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 98 78889987666665 999999877654
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.65 E-value=5.9e-07 Score=90.09 Aligned_cols=221 Identities=14% Similarity=0.209 Sum_probs=145.8
Q ss_pred CCCCcccceEEEeecccccccCC--CCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcccCCCCCCC
Q 044595 176 DVTGWEKARRLSLMHNQITNLSE--IPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQ 253 (558)
Q Consensus 176 ~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~ 253 (558)
.+..+ +++.+.+..+ +..+.. +..+ +|+.+.+.. .+..++...|..+.+|+.+++..+.++.+|.......+|+
T Consensus 131 aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~ 206 (401)
T 4fdw_A 131 AFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIE 206 (401)
T ss_dssp TTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCS
T ss_pred hcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccC
Confidence 34443 6788887654 555543 4553 699999886 7888888889999999999999999999987665678999
Q ss_pred eEeccCCCCCCcch-hhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHH
Q 044595 254 HLDLSESDIEELPG-ELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEE 332 (558)
Q Consensus 254 ~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (558)
.+.+..+ ++.++. .+..+.+|+.+.+.. ++..++...+.+ .+|+.+.+...- .......
T Consensus 207 ~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~-~~L~~i~lp~~i----------------~~I~~~a 266 (401)
T 4fdw_A 207 EVLLPVT-LKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRE-SGITTVKLPNGV----------------TNIASRA 266 (401)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTT-CCCSEEEEETTC----------------CEECTTT
T ss_pred EEEeCCc-hheehhhHhhCCCCCCEEecCC--CccCcccccccc-CCccEEEeCCCc----------------cEEChhH
Confidence 9999854 777754 477889999999986 477888877777 789999885321 1112234
Q ss_pred hccCCCcceEEEEEccchhHHHHhccccccccccceeeeeccCCCcccccchhhhhhhhhhhhccccccceeEeccCCcc
Q 044595 333 LLGLKSLEVISFTLRSSHGLQMILSSDQLRSCTRALSFQCFNDSTSLEVSALADLKQLKMLRIARSEILEELKMDCAGEV 412 (558)
Q Consensus 333 L~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~ 412 (558)
+..+.+|+.+.+..+... ........-.++..+++|+.+.+.+ .++.++......
T Consensus 267 F~~c~~L~~l~l~~~~~~----------------------~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~- 321 (401)
T 4fdw_A 267 FYYCPELAEVTTYGSTFN----------------------DDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGG- 321 (401)
T ss_dssp TTTCTTCCEEEEESSCCC----------------------CCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTT-
T ss_pred hhCCCCCCEEEeCCcccc----------------------CCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcC-
Confidence 566778888777543211 0000111222355666677776653 355555554442
Q ss_pred cccccccccEEEEcCCCCCCCch--hhhccCCCceEEEecCc
Q 044595 413 RQFVFHSLNKVEIYGCSKLKDLT--FLVFAPNLKSIKVTGSH 452 (558)
Q Consensus 413 ~~~~~~~L~~L~L~~~~~l~~l~--~l~~l~~L~~L~l~~c~ 452 (558)
+.+|+.+.|.. .++.+. .+..+ +|+.+.+.++.
T Consensus 322 ----c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 322 ----NRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp ----CCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCSS
T ss_pred ----CCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCCC
Confidence 66777777744 244432 34555 77777777653
No 149
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.44 E-value=1.1e-07 Score=82.30 Aligned_cols=87 Identities=13% Similarity=0.129 Sum_probs=55.6
Q ss_pred ccccEEEEcCCCCCCC--chhhhccCCCceEEEecCchhHHHhhcCccCCcccccccCCC----CcccceeeccCccccc
Q 044595 418 HSLNKVEIYGCSKLKD--LTFLVFAPNLKSIKVTGSHAMEAIISVGKFAEVPEVMANLNP----FAKLQNLEVIGAINLK 491 (558)
Q Consensus 418 ~~L~~L~L~~~~~l~~--l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~----~~~L~~L~l~~c~~L~ 491 (558)
.+|++|++++|. +++ +..+..+++|++|+|++|..+++.-- ..+.. .++|++|+|++|++++
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL-----------~~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCL-----------ERLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHH-----------HHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHH-----------HHHHhcccccCCCCEEEcCCCCcCC
Confidence 357777777774 655 45566777788888888776655211 11122 3567888888887776
Q ss_pred cccc-CCCCCCCcceEeeecCCCCcC
Q 044595 492 SIYW-KPLRFPHLKTMSFFHCNKLKM 516 (558)
Q Consensus 492 ~~~~-~~~~l~~L~~L~i~~C~~L~~ 516 (558)
+-.. ....+++|++|++++|++++.
T Consensus 129 D~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 129 DKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 6433 123567888888888877764
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.42 E-value=6e-08 Score=96.37 Aligned_cols=158 Identities=16% Similarity=0.119 Sum_probs=90.4
Q ss_pred ccceEEEeecccccccC--C----C-CCCCCceEEEeecCCcccc-CchhhhCCCCCcEEEcCCCCCccc-----Cccc-
Q 044595 181 EKARRLSLMHNQITNLS--E----I-PTCPHLLTFFLNKNRFQMI-PNDFFQFMPSLKVLNLSYSKLTSL-----PLGI- 246 (558)
Q Consensus 181 ~~lr~L~l~~~~~~~l~--~----~-~~~~~Lr~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~l~~l-----p~~i- 246 (558)
+.++.|++++|.+.... . + ...++|+.|++++|.+... ...+...+++|+.|++++|.++.. ...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 45667777777665421 1 1 2335777777777776532 222234456777778877777532 1112
Q ss_pred CCCCCCCeEeccCCCCCC-----cchhhhcCCCCcEEeccCCCCCCcCc----hhhhcCCCCCcEEEeeccCCCcccccc
Q 044595 247 SKLVSLQHLDLSESDIEE-----LPGELKALVNLKCLDLEYTGNLITIP----RQLISNLSRLHVLRMFGAGHNAFDEAS 317 (558)
Q Consensus 247 ~~L~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~l~~lp----~~~i~~l~~L~~L~l~~~~~~~~~~~~ 317 (558)
....+|++|++++|.++. ++..+..+++|++|++++|. +.... ...+...++|++|++.+|......
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g--- 227 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA--- 227 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH---
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH---
Confidence 245677777777777653 44455667777777777773 33211 112456667777777776543210
Q ss_pred cCCcccCCcchhHHHhccCCCcceEEEEEccch
Q 044595 318 KDSSLFGGGEFIVEELLGLKSLEVISFTLRSSH 350 (558)
Q Consensus 318 ~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~ 350 (558)
.......+...++|++|++..+...
T Consensus 228 --------~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 228 --------ALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp --------HHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred --------HHHHHHHHHhCCCCCEEeccCCCCC
Confidence 1123444556667777777665543
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.30 E-value=1.4e-07 Score=93.58 Aligned_cols=136 Identities=14% Similarity=0.152 Sum_probs=83.3
Q ss_pred CCCceEEEeecCCccccCchhhh-----CCCCCcEEEcCCCCCcc--cCcccCCCCCCCeEeccCCCCCCcc-----hhh
Q 044595 202 CPHLLTFFLNKNRFQMIPNDFFQ-----FMPSLKVLNLSYSKLTS--LPLGISKLVSLQHLDLSESDIEELP-----GEL 269 (558)
Q Consensus 202 ~~~Lr~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~l~~~~l~~lp-----~~i 269 (558)
++.|+.|++++|.+.......+. ...+|++|+|++|.++. +..-...+.+|++|++++|.+.... ..+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 35678888888887654333222 23688888888887763 2222234567888888888876332 122
Q ss_pred -hcCCCCcEEeccCCCCCCc-----CchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhccCCCcceEE
Q 044595 270 -KALVNLKCLDLEYTGNLIT-----IPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGLKSLEVIS 343 (558)
Q Consensus 270 -~~l~~L~~L~l~~~~~l~~-----lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~ 343 (558)
....+|++|++++| .+.. ++.. +...++|++|++.++...... .......+...++|++|+
T Consensus 151 ~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~-L~~~~~L~~L~Ls~N~l~~~g-----------~~~L~~~L~~~~~L~~L~ 217 (372)
T 3un9_A 151 LHDQCQITTLRLSNN-PLTAAGVAVLMEG-LAGNTSVTHLSLLHTGLGDEG-----------LELLAAQLDRNRQLQELN 217 (372)
T ss_dssp HSTTCCCCEEECCSS-CCHHHHHHHHHHH-HHTCSSCCEEECTTSSCHHHH-----------HHHHHHHGGGCSCCCEEE
T ss_pred HhcCCccceeeCCCC-CCChHHHHHHHHH-HhcCCCcCEEeCCCCCCCcHH-----------HHHHHHHHhcCCCcCeEE
Confidence 23577888888887 4433 2222 466788888888877543100 112345566667777777
Q ss_pred EEEccch
Q 044595 344 FTLRSSH 350 (558)
Q Consensus 344 l~~~~~~ 350 (558)
++.+...
T Consensus 218 Ls~N~i~ 224 (372)
T 3un9_A 218 VAYNGAG 224 (372)
T ss_dssp CCSSCCC
T ss_pred CCCCCCC
Confidence 7766544
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.27 E-value=1.8e-07 Score=81.01 Aligned_cols=89 Identities=13% Similarity=0.205 Sum_probs=58.4
Q ss_pred hhhhhhhccccccceeEeccCCcccccccccccEEEEcCCCCCCC--chhhhcc----CCCceEEEecCchhHHHhhcCc
Q 044595 389 QLKMLRIARSEILEELKMDCAGEVRQFVFHSLNKVEIYGCSKLKD--LTFLVFA----PNLKSIKVTGSHAMEAIISVGK 462 (558)
Q Consensus 389 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~--l~~l~~l----~~L~~L~l~~c~~l~~~~~~~~ 462 (558)
.|++|++++|. +.+.+..... .+++|++|+|++|..+++ +..++.+ ++|++|+|++|+.+++.-
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~-----~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G---- 131 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHME-----GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG---- 131 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGT-----TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH----
T ss_pred eEeEEeCcCCC-ccHHHHHHhc-----CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH----
Confidence 57777777774 4332222222 377888888888877777 4445543 478888888888776631
Q ss_pred cCCcccccccCCCCcccceeeccCcccccccc
Q 044595 463 FAEVPEVMANLNPFAKLQNLEVIGAINLKSIY 494 (558)
Q Consensus 463 ~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~ 494 (558)
+ ..+..+++|++|++++|+++++..
T Consensus 132 ------l-~~L~~~~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 132 ------I-IALHHFRNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp ------H-HHGGGCTTCCEEEEESCTTCCCHH
T ss_pred ------H-HHHhcCCCCCEEECCCCCCCCchH
Confidence 1 234567888888888888887643
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.15 E-value=2.5e-06 Score=84.01 Aligned_cols=63 Identities=29% Similarity=0.403 Sum_probs=37.7
Q ss_pred CcchhhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhc--cCCCcce
Q 044595 264 ELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELL--GLKSLEV 341 (558)
Q Consensus 264 ~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~--~l~~L~~ 341 (558)
.++..+..+++|+.|++++|..+ .++. + .+++|++|.+..+.. ....+..+. .+++|+.
T Consensus 163 ~L~~ll~~~P~L~~L~L~g~~~l-~l~~--~-~~~~L~~L~L~~~~l---------------~~~~l~~l~~~~lp~L~~ 223 (362)
T 2ra8_A 163 DLSPVLDAMPLLNNLKIKGTNNL-SIGK--K-PRPNLKSLEIISGGL---------------PDSVVEDILGSDLPNLEK 223 (362)
T ss_dssp BCHHHHHTCTTCCEEEEECCBTC-BCCS--C-BCTTCSEEEEECSBC---------------CHHHHHHHHHSBCTTCCE
T ss_pred CHHHHHhcCCCCcEEEEeCCCCc-eecc--c-cCCCCcEEEEecCCC---------------ChHHHHHHHHccCCCCcE
Confidence 34455667778888888776332 3443 3 377788888876543 223334443 5677777
Q ss_pred EEEE
Q 044595 342 ISFT 345 (558)
Q Consensus 342 L~l~ 345 (558)
|.+.
T Consensus 224 L~L~ 227 (362)
T 2ra8_A 224 LVLY 227 (362)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7765
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.95 E-value=0.00014 Score=72.69 Aligned_cols=124 Identities=15% Similarity=0.176 Sum_probs=60.8
Q ss_pred CCCCcccceEEEeecccccccC--CCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCccc-CcccCCCCCC
Q 044595 176 DVTGWEKARRLSLMHNQITNLS--EIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSL-PLGISKLVSL 252 (558)
Q Consensus 176 ~~~~~~~lr~L~l~~~~~~~l~--~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L 252 (558)
.+..+.+++.+.+.. .+..+. .+.+|.+|+.+.+..+ +..++...|..+..|+.+.+..+ ++.+ ...+.++..+
T Consensus 66 AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~ 142 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFK 142 (394)
T ss_dssp TTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCS
T ss_pred HhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccccc
Confidence 355555666666642 244443 2455666666666433 45555555555655555544432 2211 1122222211
Q ss_pred CeEeccCCCCCCcc-hhhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEee
Q 044595 253 QHLDLSESDIEELP-GELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMF 306 (558)
Q Consensus 253 ~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~ 306 (558)
...... .+..+. ..+..+.+|+.+.+.. .+..++...+..+.+|+.+.+.
T Consensus 143 ~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~--~~~~I~~~~F~~c~~L~~i~l~ 193 (394)
T 4fs7_A 143 EITIPE--GVTVIGDEAFATCESLEYVSLPD--SMETLHNGLFSGCGKLKSIKLP 193 (394)
T ss_dssp EEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCBCCCC
T ss_pred ccccCc--cccccchhhhcccCCCcEEecCC--ccceeccccccCCCCceEEEcC
Confidence 111111 111111 2355667777777764 3455666667777777777664
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.94 E-value=2.9e-05 Score=76.32 Aligned_cols=15 Identities=20% Similarity=0.496 Sum_probs=10.0
Q ss_pred hhhhhhhhhhhhccc
Q 044595 384 LADLKQLKMLRIARS 398 (558)
Q Consensus 384 l~~l~~L~~L~l~~~ 398 (558)
+.++++|+.|+++.|
T Consensus 303 L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 303 VDKIKHLKFINMKYN 317 (362)
T ss_dssp HHHHTTCSEEECCSB
T ss_pred cccCCcceEEECCCC
Confidence 455677777777665
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.93 E-value=3e-06 Score=79.15 Aligned_cols=99 Identities=23% Similarity=0.196 Sum_probs=68.8
Q ss_pred EEeecCCccccC---chhhhCCCCCcEEEcCCCCCccc---CcccCCCCCCCeEeccCCCCCCcchhhhcCC--CCcEEe
Q 044595 208 FFLNKNRFQMIP---NDFFQFMPSLKVLNLSYSKLTSL---PLGISKLVSLQHLDLSESDIEELPGELKALV--NLKCLD 279 (558)
Q Consensus 208 L~l~~~~~~~~~---~~~~~~l~~L~~L~l~~~~l~~l---p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~--~L~~L~ 279 (558)
+++..|....++ .....++++|+.|+|++|.++.+ |..++.+++|++|+|++|.+..+. .+..+. +|++|+
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~ 226 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELW 226 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEE
Confidence 444555433332 22235688999999999988765 355668899999999999888773 455555 899999
Q ss_pred ccCCCCCCcCc------hhhhcCCCCCcEEEeec
Q 044595 280 LEYTGNLITIP------RQLISNLSRLHVLRMFG 307 (558)
Q Consensus 280 l~~~~~l~~lp------~~~i~~l~~L~~L~l~~ 307 (558)
+.+|.....+| ..++..+++|+.|+-..
T Consensus 227 L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~~ 260 (267)
T 3rw6_A 227 LDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHE 260 (267)
T ss_dssp CTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSCB
T ss_pred ccCCcCccccCcchhHHHHHHHHCcccCeECCcC
Confidence 99886444444 23467888888887543
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.84 E-value=0.00032 Score=70.17 Aligned_cols=102 Identities=15% Similarity=0.233 Sum_probs=45.4
Q ss_pred CCCCCCceEEEeecC---CccccCchhhhCCCCCcEEEcCCCCCcccC-cccCCCCCCCeEeccCCCCCCcch-hhhcCC
Q 044595 199 IPTCPHLLTFFLNKN---RFQMIPNDFFQFMPSLKVLNLSYSKLTSLP-LGISKLVSLQHLDLSESDIEELPG-ELKALV 273 (558)
Q Consensus 199 ~~~~~~Lr~L~l~~~---~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~ 273 (558)
+.+|.+|+.+.+..+ .+..+....|..+..|+.+.+..+ ++.++ ..+..+.+|+.+.+..+ +..++. .+....
T Consensus 83 F~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~ 160 (394)
T 4gt6_A 83 FYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCY 160 (394)
T ss_dssp TTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred hhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce-eeeecccceeccc
Confidence 445555555555433 244455555555555555444433 33332 23444555555555432 222221 234445
Q ss_pred CCcEEeccCCCCCCcCchhhhcCCCCCcEEEe
Q 044595 274 NLKCLDLEYTGNLITIPRQLISNLSRLHVLRM 305 (558)
Q Consensus 274 ~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l 305 (558)
+|+.+.+.. .+..+....+. ..+|+.+.+
T Consensus 161 ~L~~i~~~~--~~~~I~~~aF~-~~~l~~i~i 189 (394)
T 4gt6_A 161 SLHTVTLPD--SVTAIEERAFT-GTALTQIHI 189 (394)
T ss_dssp TCCEEECCT--TCCEECTTTTT-TCCCSEEEE
T ss_pred ccccccccc--eeeEecccccc-ccceeEEEE
Confidence 555555543 23444433332 234555544
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.76 E-value=0.00017 Score=72.11 Aligned_cols=126 Identities=15% Similarity=0.137 Sum_probs=73.8
Q ss_pred CCCCCCcccceEEEeecccccccC--CCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCccc-CcccCCCC
Q 044595 174 APDVTGWEKARRLSLMHNQITNLS--EIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSL-PLGISKLV 250 (558)
Q Consensus 174 ~~~~~~~~~lr~L~l~~~~~~~l~--~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~L~ 250 (558)
...+..+.+|+.+.+..+ +..+. .+..+..|+.+.+.. .+..+....|..+..+....... +..+ ...+.++.
T Consensus 87 ~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~-~l~~i~~~aF~~~~~~~~~~~~~--~~~i~~~aF~~c~ 162 (394)
T 4fs7_A 87 EFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPL-MLKSIGVEAFKGCDFKEITIPEG--VTVIGDEAFATCE 162 (394)
T ss_dssp TTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCT-TCCEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCT
T ss_pred hhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccC-ceeeecceeeecccccccccCcc--ccccchhhhcccC
Confidence 345777889999988643 44443 356777777765543 34455555566555444333222 2222 23566777
Q ss_pred CCCeEeccCCCCCCcch-hhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEee
Q 044595 251 SLQHLDLSESDIEELPG-ELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMF 306 (558)
Q Consensus 251 ~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~ 306 (558)
+|+.+.+..+ +..++. .+..+.+|+.+.+..+ +..++...+.++..|+.+.+.
T Consensus 163 ~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~ 216 (394)
T 4fs7_A 163 SLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFP 216 (394)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCC
T ss_pred CCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecC
Confidence 7777777544 333433 3556677777777643 556666656667777666554
No 159
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.68 E-value=2.7e-05 Score=68.81 Aligned_cols=107 Identities=15% Similarity=0.125 Sum_probs=55.6
Q ss_pred CCCCceEEEeecC-Cccc-----cCchhhhCCCCCcEEEcCCCCCcc-----cCcccCCCCCCCeEeccCCCCCC-----
Q 044595 201 TCPHLLTFFLNKN-RFQM-----IPNDFFQFMPSLKVLNLSYSKLTS-----LPLGISKLVSLQHLDLSESDIEE----- 264 (558)
Q Consensus 201 ~~~~Lr~L~l~~~-~~~~-----~~~~~~~~l~~L~~L~l~~~~l~~-----lp~~i~~L~~L~~L~l~~~~l~~----- 264 (558)
..+.|++|++++| .+.. +.. .+...++|++|+|++|.+.. +...+...++|++|+|++|.+..
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~-~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAE-ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHH-HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHH-HHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 3455555666555 4432 111 23445566666666665542 23334445566666666666652
Q ss_pred cchhhhcCCCCcEEec--cCCCCCCc-----CchhhhcCCCCCcEEEeeccCC
Q 044595 265 LPGELKALVNLKCLDL--EYTGNLIT-----IPRQLISNLSRLHVLRMFGAGH 310 (558)
Q Consensus 265 lp~~i~~l~~L~~L~l--~~~~~l~~-----lp~~~i~~l~~L~~L~l~~~~~ 310 (558)
+...+...++|++|++ ++| .+.. +.. .+...++|++|++.++..
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~-~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIAN-MLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHH-HHHHCSSCCEEECCCSSH
T ss_pred HHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHH-HHHhCCCcCEEeccCCCC
Confidence 3444555566666666 444 2322 111 134456677777665543
No 160
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.67 E-value=3.5e-05 Score=68.12 Aligned_cols=117 Identities=15% Similarity=0.123 Sum_probs=71.9
Q ss_pred hhhCCCCCcEEEcCCC-CCc-----ccCcccCCCCCCCeEeccCCCCCC-----cchhhhcCCCCcEEeccCCCCCCc--
Q 044595 222 FFQFMPSLKVLNLSYS-KLT-----SLPLGISKLVSLQHLDLSESDIEE-----LPGELKALVNLKCLDLEYTGNLIT-- 288 (558)
Q Consensus 222 ~~~~l~~L~~L~l~~~-~l~-----~lp~~i~~L~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~l~~-- 288 (558)
.+...+.|+.|+|++| .+. .+...+...++|++|+|++|.+.. +...+...++|++|++++| .+..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g 109 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSG 109 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHH
Confidence 3566777777777777 665 234455666777777777777662 3444555677777777776 3333
Q ss_pred ---CchhhhcCCCCCcEEEe--eccCCCcccccccCCcccCCcchhHHHhccCCCcceEEEEEccchh
Q 044595 289 ---IPRQLISNLSRLHVLRM--FGAGHNAFDEASKDSSLFGGGEFIVEELLGLKSLEVISFTLRSSHG 351 (558)
Q Consensus 289 ---lp~~~i~~l~~L~~L~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~ 351 (558)
+... +...++|++|++ .++...... .....+.+...++|+.|++..+....
T Consensus 110 ~~~l~~~-L~~n~~L~~L~L~~~~N~i~~~g-----------~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 110 ILALVEA-LQSNTSLIELRIDNQSQPLGNNV-----------EMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHHHG-GGGCSSCCEEECCCCSSCCCHHH-----------HHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHHH-HHhCCCceEEEecCCCCCCCHHH-----------HHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 2222 455667777777 545443210 23466677777777777777666543
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.66 E-value=6.1e-05 Score=70.24 Aligned_cols=80 Identities=29% Similarity=0.362 Sum_probs=64.8
Q ss_pred CCCCCceEEEeecCCccccCc--hhhhCCCCCcEEEcCCCCCcccCcccCCCC--CCCeEeccCCCCCC-cc-------h
Q 044595 200 PTCPHLLTFFLNKNRFQMIPN--DFFQFMPSLKVLNLSYSKLTSLPLGISKLV--SLQHLDLSESDIEE-LP-------G 267 (558)
Q Consensus 200 ~~~~~Lr~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~--~L~~L~l~~~~l~~-lp-------~ 267 (558)
..+++|++|++++|.+..++. ..+..+++|++|+|++|.++.+ ..+..+. +|++|++++|.+.. +| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 357899999999999987653 4467899999999999999977 3455555 99999999998873 44 2
Q ss_pred hhhcCCCCcEEec
Q 044595 268 ELKALVNLKCLDL 280 (558)
Q Consensus 268 ~i~~l~~L~~L~l 280 (558)
.+..+++|+.||=
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 4788999999984
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.55 E-value=0.0031 Score=62.86 Aligned_cols=283 Identities=13% Similarity=0.170 Sum_probs=151.9
Q ss_pred cccCCCCCCcccceEEEeeccc---ccccC--CCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCccc-Cc
Q 044595 171 LVEAPDVTGWEKARRLSLMHNQ---ITNLS--EIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSL-PL 244 (558)
Q Consensus 171 ~~~~~~~~~~~~lr~L~l~~~~---~~~l~--~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~ 244 (558)
......+..+.+|+.+.+..+. +..+. .+..+.+|+.+.+.. .+..++...|..+.+|+.+.+..+ ++.+ ..
T Consensus 77 ~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~-~~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~ 154 (394)
T 4gt6_A 77 EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD-SVTEIDSEAFHHCEELDTVTIPEG-VTSVADG 154 (394)
T ss_dssp EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT-TCSEECTTTTTTCTTCCEEECCTT-CCEECTT
T ss_pred EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCC-ccceehhhhhhhhcccccccccce-eeeeccc
Confidence 3344567888999999987664 34442 366788888776654 366778878899999999999765 4444 34
Q ss_pred ccCCCCCCCeEeccCCCCCCcchhhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEeeccCCCcccccccCCcccC
Q 044595 245 GISKLVSLQHLDLSESDIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMFGAGHNAFDEASKDSSLFG 324 (558)
Q Consensus 245 ~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 324 (558)
.+..+.+|+.+.+..+ +..+....-.-.+|+.+.+... +..+....+..+.++.......................
T Consensus 155 ~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~--~~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~- 230 (394)
T 4gt6_A 155 MFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAK--VTRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSAN- 230 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTT--CCEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTT-
T ss_pred ceecccccccccccce-eeEeccccccccceeEEEECCc--ccccccchhhhccccceecccccccccccceeeccccc-
Confidence 6778899999998654 5555544334467888888753 44555555777777877765433221110000000000
Q ss_pred CcchhHHHhccCCCcceEEEEEccchhHHHHhccccccccccceeeeeccCCCcccccchhhhhhhhhhhhcccccccee
Q 044595 325 GGEFIVEELLGLKSLEVISFTLRSSHGLQMILSSDQLRSCTRALSFQCFNDSTSLEVSALADLKQLKMLRIARSEILEEL 404 (558)
Q Consensus 325 ~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l 404 (558)
.............+..+.+. .....+.. .....+..|+.+.+.. ......-.++.+++.|+.+.+.. .+..+
T Consensus 231 -~~~~~~~~~~~~~~~~~~ip-~~v~~i~~--~aF~~c~~L~~i~lp~--~~~~I~~~aF~~c~~L~~i~l~~--~i~~I 302 (394)
T 4gt6_A 231 -GDYALIRYPSQREDPAFKIP-NGVARIET--HAFDSCAYLASVKMPD--SVVSIGTGAFMNCPALQDIEFSS--RITEL 302 (394)
T ss_dssp -SCEEEEECCTTCCCSEEECC-TTEEEECT--TTTTTCSSCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEE
T ss_pred -ccccccccccccccceEEcC-CcceEccc--ceeeecccccEEeccc--ccceecCcccccccccccccCCC--ccccc
Confidence 00000000011111111110 00000000 0001112344444422 11222223455667777777642 45566
Q ss_pred EeccCCcccccccccccEEEEcCCCCCCCch--hhhccCCCceEEEecCchhHHHhhcCccCCcccccccCCCCccccee
Q 044595 405 KMDCAGEVRQFVFHSLNKVEIYGCSKLKDLT--FLVFAPNLKSIKVTGSHAMEAIISVGKFAEVPEVMANLNPFAKLQNL 482 (558)
Q Consensus 405 ~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L 482 (558)
+...... +.+|+.+.|.. .++.+. .+..+.+|+.+.|... ++.+.. ....++++|+.+
T Consensus 303 ~~~aF~~-----c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~-----------~aF~~C~~L~~i 362 (394)
T 4gt6_A 303 PESVFAG-----CISLKSIDIPE--GITQILDDAFAGCEQLERIAIPSS--VTKIPE-----------SAFSNCTALNNI 362 (394)
T ss_dssp CTTTTTT-----CTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECTT--CCBCCG-----------GGGTTCTTCCEE
T ss_pred CceeecC-----CCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECcc--cCEEhH-----------hHhhCCCCCCEE
Confidence 5554442 67888888854 344443 3556788888887532 222211 345677888888
Q ss_pred eccCc
Q 044595 483 EVIGA 487 (558)
Q Consensus 483 ~l~~c 487 (558)
.+.+.
T Consensus 363 ~~~~~ 367 (394)
T 4gt6_A 363 EYSGS 367 (394)
T ss_dssp EESSC
T ss_pred EECCc
Confidence 88763
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.09 E-value=0.047 Score=53.81 Aligned_cols=120 Identities=10% Similarity=0.110 Sum_probs=54.9
Q ss_pred cccceEEEeecccccccC--CCCCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCcccCCCCCCCeEec
Q 044595 180 WEKARRLSLMHNQITNLS--EIPTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPLGISKLVSLQHLDL 257 (558)
Q Consensus 180 ~~~lr~L~l~~~~~~~l~--~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l 257 (558)
..+++.+.+. ..++.+. .+..|.+|+.+.+.. .+..+....|.++ .|..+.+..+ ++.++.......+|+.+.+
T Consensus 45 ~~~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~-~v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~~L~~i~l 120 (379)
T 4h09_A 45 RDRISEVRVN-SGITSIGEANFNSCYNMTKVTVAS-TVTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGTDLDDFEF 120 (379)
T ss_dssp GGGCSEEEEC-TTEEEECTTTTTTCTTCCEEEECT-TCCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTCCCSEEEC
T ss_pred ccCCEEEEeC-CCccChHHHHhhCCCCCCEEEeCC-cceEechhhhcCC-CCceEECCce-eeEeccceeccCCcccccC
Confidence 3455555554 2233332 255566666666643 2555665556555 3444444332 4434332222235666665
Q ss_pred cCCCCCCcchhhhcCCCCcEEeccCCCCCCcCchhhhcCCCCCcEEEee
Q 044595 258 SESDIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLHVLRMF 306 (558)
Q Consensus 258 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~ 306 (558)
..+ +..+....-.-.+|+.+.+.. .+..+....+....+++.....
T Consensus 121 p~~-~~~i~~~~F~~~~l~~~~~~~--~v~~i~~~~f~~~~~l~~~~~~ 166 (379)
T 4h09_A 121 PGA-TTEIGNYIFYNSSVKRIVIPK--SVTTIKDGIGYKAENLEKIEVS 166 (379)
T ss_dssp CTT-CCEECTTTTTTCCCCEEEECT--TCCEECSCTTTTCTTCCEEEEC
T ss_pred CCc-cccccccccccceeeeeeccc--eeeccccchhcccccccccccc
Confidence 443 232322222223444444443 2334443334555555555554
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.46 E-value=0.074 Score=52.38 Aligned_cols=102 Identities=24% Similarity=0.204 Sum_probs=46.3
Q ss_pred CCCCCceEEEeecCCccccCchhhhCCCCCcEEEcCCCCCcccCc-ccCCCCCCCeEeccCCCCCCcch-hhhcCCCCcE
Q 044595 200 PTCPHLLTFFLNKNRFQMIPNDFFQFMPSLKVLNLSYSKLTSLPL-GISKLVSLQHLDLSESDIEELPG-ELKALVNLKC 277 (558)
Q Consensus 200 ~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~ 277 (558)
..+..|+.+.+..+ +..+....|..+..|+.+.+..+ ++.++. .+.++.+|+.+.+.++.++.++. .+..+.+|+.
T Consensus 237 ~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~ 314 (379)
T 4h09_A 237 YGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSS 314 (379)
T ss_dssp TTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCE
T ss_pred cCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCE
Confidence 34444555444432 34444444455555555555432 333322 34445555555555444444432 2444455555
Q ss_pred EeccCCCCCCcCchhhhcCCCCCcEEEe
Q 044595 278 LDLEYTGNLITIPRQLISNLSRLHVLRM 305 (558)
Q Consensus 278 L~l~~~~~l~~lp~~~i~~l~~L~~L~l 305 (558)
+.+.. .++.+....+.++.+|+.+.+
T Consensus 315 i~lp~--~l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 315 VTLPT--ALKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp EECCT--TCCEECTTTTTTCTTCCCCCC
T ss_pred EEcCc--cccEEHHHHhhCCCCCCEEEE
Confidence 55542 244444444445555554444
No 165
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.35 E-value=0.03 Score=45.74 Aligned_cols=31 Identities=29% Similarity=0.379 Sum_probs=12.3
Q ss_pred CCeEeccCCCCCCcchh-hhcCCCCcEEeccC
Q 044595 252 LQHLDLSESDIEELPGE-LKALVNLKCLDLEY 282 (558)
Q Consensus 252 L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~ 282 (558)
|++|+|++|.|+.+|.. +..+.+|++|+|.+
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 64 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGA 64 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCS
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecC
Confidence 44444444444444332 23333444444433
No 166
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.50 E-value=0.059 Score=43.93 Aligned_cols=35 Identities=29% Similarity=0.376 Sum_probs=17.8
Q ss_pred CCcEEEcCCCCCcccCcc-cCCCCCCCeEeccCCCC
Q 044595 228 SLKVLNLSYSKLTSLPLG-ISKLVSLQHLDLSESDI 262 (558)
Q Consensus 228 ~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~l 262 (558)
+|++|+|++|.|+.+|.. +..+.+|++|+|.+|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 455555555555555432 34455555555555533
No 167
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.33 E-value=0.15 Score=44.73 Aligned_cols=115 Identities=12% Similarity=0.093 Sum_probs=55.5
Q ss_pred hCCCCCcEEEcCCC-CCc-----ccCcccCCCCCCCeEeccCCCCC-----CcchhhhcCCCCcEEeccCCCCCCcCch-
Q 044595 224 QFMPSLKVLNLSYS-KLT-----SLPLGISKLVSLQHLDLSESDIE-----ELPGELKALVNLKCLDLEYTGNLITIPR- 291 (558)
Q Consensus 224 ~~l~~L~~L~l~~~-~l~-----~lp~~i~~L~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~l~~lp~- 291 (558)
.+-..|+.|+|+++ .+. .+-..+..-..|+.|+|++|.+. .+-..+..-+.|++|+|++|. +..--.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~-Ig~~Ga~ 116 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF-LTPELLA 116 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc-CCHHHHH
Confidence 34455666666653 443 23334444556666666666655 333444455667777777662 221100
Q ss_pred ---hhhcCCCCCcEEEeeccCCCcccccccCCcccCCcchhHHHhccCCCcceEEEEEc
Q 044595 292 ---QLISNLSRLHVLRMFGAGHNAFDEASKDSSLFGGGEFIVEELLGLKSLEVISFTLR 347 (558)
Q Consensus 292 ---~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~ 347 (558)
..+..=+.|++|++.++....+.... .....+.|..-+.|+.|++..+
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g--------~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQV--------EMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHH--------HHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHH--------HHHHHHHHHhCCCcCeEeccCC
Confidence 11233345777777543220100000 1123445555566776666543
No 168
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.10 E-value=0.16 Score=44.57 Aligned_cols=60 Identities=12% Similarity=0.067 Sum_probs=29.5
Q ss_pred hCCCCCcEEEcCCCCCc-----ccCcccCCCCCCCeEeccCCCCC-----CcchhhhcCCCCcEEeccCC
Q 044595 224 QFMPSLKVLNLSYSKLT-----SLPLGISKLVSLQHLDLSESDIE-----ELPGELKALVNLKCLDLEYT 283 (558)
Q Consensus 224 ~~l~~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~~ 283 (558)
..-..|+.|+|++|.+. .+-..+..-+.|++|+|++|.|. .+-..+..-+.|++|+++++
T Consensus 67 ~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 67 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 33445666666666554 12222333455666666666555 12223334455666666543
No 169
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=74.94 E-value=4.9 Score=38.28 Aligned_cols=120 Identities=17% Similarity=0.131 Sum_probs=65.0
Q ss_pred HHHHHHHHHcCCchhHHHHHHHHHcCCCChhhHH-HHHHHHhccCCCCCCCccchhhhHHhcccCCCCcchhhhhccccc
Q 044595 6 QLAQAAARECDGLPLALITIGRAMACKKTPDEWI-YDIEVLRTSSSQFPGLGNEVYPLLKFSYDRLPSDTIKSCLLYCSL 84 (558)
Q Consensus 6 ~i~~~iv~~c~GlPLai~~ig~~L~~~~~~~~W~-~~~~~l~~~~~~~~~~~~~i~~~L~~SY~~L~~~~lk~cfl~~~~ 84 (558)
+...+|+..|+|.|+++..++..+....+...+- .+.+...... ..++ -.+.++ ++ ..+..+..+|.
T Consensus 226 ~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l---~~l~~~--~~-~~~~~l~~la~ 293 (350)
T 2qen_A 226 NEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLI------MGEL---EELRRR--SP-RYVDILRAIAL 293 (350)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH------HHHH---HHHHHH--CH-HHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHHHHH------HHHH---HHHHhC--Ch-hHHHHHHHHHh
Confidence 4567899999999999999987653212222221 1111111000 0011 122222 55 37888888887
Q ss_pred CCCCCccCHHHHHHHHHHcCccccCCchhhHHhHHHHHHHHHHhcccccCCCCceeh-hhHHHHH
Q 044595 85 YPEDYCISKEKLIDCWIGEGFLTERDRIGEQKEGYHILGILLHACLLEEGGDGEVKM-HDVIRDM 148 (558)
Q Consensus 85 fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~m-hdl~~~~ 148 (558)
+ .++...+.....+.. - . . .......+++.|.+.+++...+ +.|++ |.++++.
T Consensus 294 ---g-~~~~~~l~~~~~~~~-~-~---~-~~~~~~~~l~~L~~~gli~~~~-~~y~~~~p~~~~~ 347 (350)
T 2qen_A 294 ---G-YNRWSLIRDYLAVKG-T-K---I-PEPRLYALLENLKKMNWIVEED-NTYKIADPVVATV 347 (350)
T ss_dssp ---T-CCSHHHHHHHHHHTT-C-C---C-CHHHHHHHHHHHHHTTSEEEET-TEEEESSHHHHHH
T ss_pred ---C-CCCHHHHHHHHHHHh-C-C---C-CHHHHHHHHHHHHhCCCEEecC-CEEEEecHHHHHH
Confidence 2 245555554432211 0 0 1 1234567899999999998754 45554 5566654
No 170
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=68.46 E-value=11 Score=35.71 Aligned_cols=117 Identities=16% Similarity=0.063 Sum_probs=65.4
Q ss_pred HHHHHHcCCchhHHHHHHHHHcCCCChhhHHH-HHHHHhccCCCCCCCccchhhhH-Hhccc--CCCCcchhhhhccccc
Q 044595 9 QAAARECDGLPLALITIGRAMACKKTPDEWIY-DIEVLRTSSSQFPGLGNEVYPLL-KFSYD--RLPSDTIKSCLLYCSL 84 (558)
Q Consensus 9 ~~iv~~c~GlPLai~~ig~~L~~~~~~~~W~~-~~~~l~~~~~~~~~~~~~i~~~L-~~SY~--~L~~~~lk~cfl~~~~ 84 (558)
.+|+++|+|.|+++..++..+....+...|-. +.+.... .+...+ .+.|+ .|++. .+..+..+|+
T Consensus 233 ~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~l~~~-~~~~l~~la~ 301 (357)
T 2fna_A 233 EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKK----------LILKEFENFLHGREIARKR-YLNIMRTLSK 301 (357)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH----------HHHHHHHHHHTTCGGGHHH-HHHHHHHHTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHH----------HHHHHHHHHhhccccccHH-HHHHHHHHHc
Confidence 67999999999999999987653233333321 1111100 111111 12221 56774 7888888887
Q ss_pred CCCCCccCHHHHHHHHH-HcCccccCCchhhHHhHHHHHHHHHHhcccccCCCCcee-hhhHHHHH
Q 044595 85 YPEDYCISKEKLIDCWI-GEGFLTERDRIGEQKEGYHILGILLHACLLEEGGDGEVK-MHDVIRDM 148 (558)
Q Consensus 85 fp~~~~i~~~~Li~~W~-aeg~i~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~-mhdl~~~~ 148 (558)
+. +...+..... ..|. . ........+++.|++.+++...+ +.|+ .|.++++.
T Consensus 302 ---g~--~~~~l~~~~~~~~g~--~----~~~~~~~~~L~~L~~~gli~~~~-~~y~f~~~~~~~~ 355 (357)
T 2fna_A 302 ---CG--KWSDVKRALELEEGI--E----ISDSEIYNYLTQLTKHSWIIKEG-EKYCPSEPLISLA 355 (357)
T ss_dssp ---CB--CHHHHHHHHHHHHCS--C----CCHHHHHHHHHHHHHTTSEEESS-SCEEESSHHHHHH
T ss_pred ---CC--CHHHHHHHHHHhcCC--C----CCHHHHHHHHHHHHhCCCEEecC-CEEEecCHHHHHh
Confidence 22 4444433211 1121 0 01234567899999999998764 4555 56677654
No 171
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=64.29 E-value=4.3 Score=38.37 Aligned_cols=34 Identities=26% Similarity=0.234 Sum_probs=22.8
Q ss_pred HHHcCcccc-CCchhhHHhHHHHHH-HHHHhccccc
Q 044595 100 WIGEGFLTE-RDRIGEQKEGYHILG-ILLHACLLEE 133 (558)
Q Consensus 100 W~aeg~i~~-~~~~~~~~~~~~~~~-~L~~~~l~~~ 133 (558)
-+..|++.. ..+..+.+.|..|++ ++++++++|+
T Consensus 289 ~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 289 LIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp HHHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HHHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 556888866 567888899999997 8899998875
No 172
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=45.35 E-value=17 Score=35.37 Aligned_cols=114 Identities=10% Similarity=-0.059 Sum_probs=62.4
Q ss_pred HHHHHHHHHcC------CchhHHHHHHHHH-----c-CC--CChhhHHHHHHHHhccCCCCCCCccchhhhHHhcccCCC
Q 044595 6 QLAQAAARECD------GLPLALITIGRAM-----A-CK--KTPDEWIYDIEVLRTSSSQFPGLGNEVYPLLKFSYDRLP 71 (558)
Q Consensus 6 ~i~~~iv~~c~------GlPLai~~ig~~L-----~-~~--~~~~~W~~~~~~l~~~~~~~~~~~~~i~~~L~~SY~~L~ 71 (558)
+....|+++|+ |.|..+..+.... . .. .+.+.+..+...... ...+.-+++.||
T Consensus 240 ~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------------~~~~~~~l~~l~ 307 (412)
T 1w5s_A 240 RHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------------ASIQTHELEALS 307 (412)
T ss_dssp HHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------------CCSSSSSC
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------------cchHHHHHHcCC
Confidence 46678899999 9997655554321 1 11 123344444332110 223445678899
Q ss_pred CcchhhhhcccccCC--CCCccCHHHHHHHHHHc--CccccCCchhhHHhHHHHHHHHHHhcccccC
Q 044595 72 SDTIKSCLLYCSLYP--EDYCISKEKLIDCWIGE--GFLTERDRIGEQKEGYHILGILLHACLLEEG 134 (558)
Q Consensus 72 ~~~lk~cfl~~~~fp--~~~~i~~~~Li~~W~ae--g~i~~~~~~~~~~~~~~~~~~L~~~~l~~~~ 134 (558)
.+ .+.++..++.+. .+..++..++...+..- ...... .........+++.|...+++...
T Consensus 308 ~~-~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 308 IH-ELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNVK--PRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp HH-HHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCCC--CCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HH-HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCCC--CCCHHHHHHHHHHHHhCCCEEee
Confidence 85 888888888654 33456666665554321 111100 00123455789999999999764
No 173
>2vda_B Maltoporin; sugar transport, protein transport, protein targeting, transmembrane, outer membrane, signal peptide; NMR {Escherichia coli}
Probab=27.89 E-value=26 Score=18.43 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=14.7
Q ss_pred HcCCchhHHHHHHHHHcC
Q 044595 14 ECDGLPLALITIGRAMAC 31 (558)
Q Consensus 14 ~c~GlPLai~~ig~~L~~ 31 (558)
|-.-+|||..++++..+.
T Consensus 7 krrklplavav~agv~~a 24 (28)
T 2vda_B 7 KRRKLPLAVAVAAGVMSA 24 (28)
T ss_dssp CCCCCTHHHHHHHHTTCC
T ss_pred ccccCchHHHHHHHHhHh
Confidence 446799999999998765
No 174
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=26.54 E-value=67 Score=24.07 Aligned_cols=44 Identities=14% Similarity=0.102 Sum_probs=19.9
Q ss_pred CccccCchhhhCCCCCcEEEcCCCCCccc-CcccCCCCCCCeEecc
Q 044595 214 RFQMIPNDFFQFMPSLKVLNLSYSKLTSL-PLGISKLVSLQHLDLS 258 (558)
Q Consensus 214 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~ 258 (558)
.++.+....|.++..|+.+.+-.+ ++.+ ...|.++.+|+.+.+.
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 334444444555555555555443 2222 1234445555554443
Done!