Query 044596
Match_columns 644
No_of_seqs 193 out of 293
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 04:52:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044596.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044596hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03181 BURP: BURP domain; I 100.0 5.9E-81 1.3E-85 619.3 21.3 213 424-640 1-216 (216)
2 KOG0022 Alcohol dehydrogenase, 51.7 10 0.00023 41.7 2.4 30 576-613 29-58 (375)
3 PF06890 Phage_Mu_Gp45: Bacter 22.0 1.6E+02 0.0036 29.3 5.1 54 574-642 43-96 (162)
4 PF10717 ODV-E18: Occlusion-de 18.2 1.7E+02 0.0036 26.6 3.8 27 14-40 28-54 (85)
5 PF13079 DUF3916: Protein of u 17.2 53 0.0011 32.6 0.5 70 49-122 9-82 (153)
6 COG1062 AdhC Zn-dependent alco 11.5 2.2E+02 0.0047 32.0 3.3 31 577-608 15-48 (366)
7 PF09899 DUF2126: Putative ami 11.1 1.3E+02 0.0029 36.7 1.6 11 555-565 700-710 (819)
8 PF08121 Toxin_33: Waglerin fa 10.1 96 0.0021 21.2 0.0 8 625-632 11-18 (22)
9 COG1064 AdhP Zn-dependent alco 9.9 1.9E+02 0.0042 32.0 2.3 16 595-610 36-51 (339)
10 TIGR00608 radc DNA repair prot 9.9 8.7E+02 0.019 25.1 6.8 114 467-606 58-172 (218)
No 1
>PF03181 BURP: BURP domain; InterPro: IPR004873 The BURP domain is a ~230-residue module, which has been named for the four members of the group initially identified, BNM2, USP, RD22, and PG1beta. It is found in the C-terminal part of a number of plant cell wall proteins, which are defined not only by the BURP domain, but also by the overall similarity in their modular construction. The BURP domain proteins consists of either three or four modules: (i) an N-terminal hydrophobic domain - a presumptive transit peptide, joined to (ii) a short conserved segment or other short segment, (iii) an optional segment consisting of repeated units which is unique to each member, and (iv) the C-terminal BURP domain. Although the BURP domain proteins share primary structural features, their expression patterns and the conditions under which they are expressed differ. The presence of the conserved BURP domain in diverse plant proteins suggests an important and fundamental functional role for this domain []. It is possible that the BURP domain represents a general motif for localization of proteins within the cell wall matrix. The other structural domains associated with the BURP domain may specify other target sites for intermolecular interactions []. Some proteins known to contain a BURP domain are listed below [, , ]: Brassica protein BNM2, which is expressed during the induction of microspore embryogenesis. Field bean USPs, abundant non-storage seed proteins with unknown function. Soybean USP-like proteins ADR6 (or SALI5-4A), an auxin-repressible, aluminium-inducible protein and SALI3-2, a protein that is up-regulated by aluminium. Soybean seed coat BURP-domain protein 1 (SCB1). It might play a role in the differentiation of the seed coat parenchyma cells. Arabidopsis RD22 drought induced protein. Maize ZRP2, a protein of unknown function in cortex parenchyma. Tomato PG1beta, the beta-subunit of polygalacturonase isozyme 1 (PG1), which is expressed in ripening fruits. Cereal RAFTIN. It is essential specifically for the maturation phase of pollen development.
Probab=100.00 E-value=5.9e-81 Score=619.30 Aligned_cols=213 Identities=40% Similarity=0.742 Sum_probs=199.9
Q ss_pred CccccccCCCCCceecCCCCC-CCCCCCCCCchhcccCCCCCcccHHHHHHHhcCCCCchHHHHHHHHHHHhccCCCCCC
Q 044596 424 GKFFRESMLKTGTVMPMPDIR-DKMPQRSFLPRAIVSKLPFSSSNVNVLKEIFHASENSSMESIIKDALSECERQPSKGE 502 (644)
Q Consensus 424 g~FF~E~dL~pG~~M~l~~i~-d~~p~~~FLPR~vAdsIPFSs~kL~eIL~~Fsi~~~S~~A~~m~~TL~~CE~~pi~GE 502 (644)
.+||+|+||+||++|+|++.. +..+.++||||++|++||||+++|++||++|+|+++|+||++|++||++||.+|++||
T Consensus 1 ~~fF~e~dL~~G~~m~l~f~~~~~~~~~~fLpr~~A~siPfss~~l~~iL~~Fsi~~~S~~A~~m~~Tl~~Ce~~~~~GE 80 (216)
T PF03181_consen 1 ALFFLEKDLHPGKKMPLYFPKSDNSAKRPFLPRQVADSIPFSSSKLPEILQMFSIPPGSPMAKAMKNTLEECESPPIKGE 80 (216)
T ss_pred CcccCHHHCCCCceeeecCCCCCCCcccccCCHHHhccCCcCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCCc
Confidence 379999999999999987643 3346789999999999999999999999999999999999999999999999999999
Q ss_pred cccccCchhhHHHHHhhhcCC-ceEEEEeeccc-CCcceEEEeeeeeecCCCccceeeecccCCcceeeEeeeeCceeEE
Q 044596 503 TKRCIGSAEDMIDFATSVLGN-SVTLRTTQNVQ-GSKQNIMIGSVKGINGGKVTQSVSCHQSLFPYLLYYCHSVPKVRVY 580 (644)
Q Consensus 503 ~K~CaTSLESMiDFa~S~LG~-nv~~~ST~~~~-~s~q~~~v~~V~~i~gg~~~k~V~CH~~~YPYaVfYCH~v~~TrvY 580 (644)
+|+|||||||||||++|+||+ +|++++|+... ...|+|+|++|++|.++ +++|+||+|+|||+|||||.++.||||
T Consensus 81 ~k~CaTSLESMvdF~~s~LG~~~v~a~st~~~~~~~~~~y~V~~v~~i~~~--~~~V~CH~~~yPYaVyyCH~~~~t~~y 158 (216)
T PF03181_consen 81 TKYCATSLESMVDFAVSKLGTRNVRALSTEVPKSTPLQNYTVEGVKKIGGG--DKSVVCHKMPYPYAVYYCHSIPPTRVY 158 (216)
T ss_pred CccCcCCHHHHHHHHHHhcCCCccEEEeccccCCCCCccEEEEeeeeecCC--CceEEEcccCCceeEEEeeecCceeEE
Confidence 999999999999999999999 79999998876 45789999999999873 589999999999999999999999999
Q ss_pred EEEeeCCcCccccceEEEEeeccCCCCCCcchHHHhhCCCCCCcceeeeeeCCceEEeec
Q 044596 581 EADLLDPKTKAKINHGVAICHIDTSAWSQTHGAFLALGSGPGRIEVCHWIFENDLTWTIV 640 (644)
Q Consensus 581 ~V~L~g~d~~~ki~~AvAVCH~DTS~WnP~H~AF~~L~vkPG~~pVCHfi~~~~ivWvpa 640 (644)
+|+|++.|++ +++||||||+|||.|||+|+||++||+|||++||||||++++|+|||.
T Consensus 159 ~V~l~g~dg~--~~~avavCH~DTS~W~p~h~aF~~L~vkPG~~~VCHf~~~~~ivWv~~ 216 (216)
T PF03181_consen 159 MVPLVGEDGT--KVEAVAVCHLDTSGWNPDHPAFQVLGVKPGTVPVCHFLPNDHIVWVPN 216 (216)
T ss_pred EEEEeecCCc--eEEEEEEEecCCCCCCcchHHHHHhCCCCCCcceEEEeeCCeEEEccC
Confidence 9999999987 368999999999999999999999999999999999999999999983
No 2
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=51.68 E-value=10 Score=41.67 Aligned_cols=30 Identities=27% Similarity=0.540 Sum_probs=22.3
Q ss_pred ceeEEEEEeeCCcCccccceEEEEeeccCCCCCCcchH
Q 044596 576 KVRVYEADLLDPKTKAKINHGVAICHIDTSAWSQTHGA 613 (644)
Q Consensus 576 ~TrvY~V~L~g~d~~~ki~~AvAVCH~DTS~WnP~H~A 613 (644)
+-++++|.+ || .+.+|||+|...|+-.++.
T Consensus 29 pPka~EVRI-------KI-~~t~vCHTD~~~~~g~~~~ 58 (375)
T KOG0022|consen 29 PPKAHEVRI-------KI-LATGVCHTDAYVWSGKDPE 58 (375)
T ss_pred CCCCceEEE-------EE-EEEeeccccceeecCCCcc
Confidence 346677766 44 5999999999999976443
No 3
>PF06890 Phage_Mu_Gp45: Bacteriophage Mu Gp45 protein; InterPro: IPR014462 This entry is represented by the Bacteriophage Mu, Gp45. The characteristics of the protein distribution suggest prophage matches.
Probab=21.95 E-value=1.6e+02 Score=29.27 Aligned_cols=54 Identities=22% Similarity=0.190 Sum_probs=39.1
Q ss_pred eCceeEEEEEeeCCcCccccceEEEEeeccCCCCCCcchHHHhhCCCCCCcceeeeeeCCceEEeecCC
Q 044596 574 VPKVRVYEADLLDPKTKAKINHGVAICHIDTSAWSQTHGAFLALGSGPGRIEVCHWIFENDLTWTIVDR 642 (644)
Q Consensus 574 v~~TrvY~V~L~g~d~~~ki~~AvAVCH~DTS~WnP~H~AF~~L~vkPG~~pVCHfi~~~~ivWvpa~~ 642 (644)
++.+.++.+.|-|.- .+.|+||-- |..+++-+++||+ ||=|=.+++.||+..+.
T Consensus 43 p~Ga~~vvl~lGG~r-----s~~Vvia~~--------d~~yR~~~L~~GE--valY~~~G~~I~L~~~G 96 (162)
T PF06890_consen 43 PPGAEAVVLFLGGDR-----SHGVVIAVE--------DRRYRPKGLKPGE--VALYDDEGQKIHLKRDG 96 (162)
T ss_pred CCCCeEEEEEeccCC-----cceEEEEeC--------CccccccCCCCCc--EEEEcCCCCEEEEEecc
Confidence 346888888885422 357888863 5567888899996 66666899999998653
No 4
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=18.21 E-value=1.7e+02 Score=26.61 Aligned_cols=27 Identities=7% Similarity=0.316 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhhhccceeEEeccCCCC
Q 044596 14 LFSFFFVLLYSFLLLSVKVTLAGGANT 40 (644)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (644)
|.+|..++++.||.++++-...|...+
T Consensus 28 MtILivLVIIiLlImlfqsSS~~~~s~ 54 (85)
T PF10717_consen 28 MTILIVLVIIILLIMLFQSSSNGNSSS 54 (85)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCC
Confidence 444444444334455567776666433
No 5
>PF13079 DUF3916: Protein of unknown function (DUF3916)
Probab=17.17 E-value=53 Score=32.57 Aligned_cols=70 Identities=23% Similarity=0.356 Sum_probs=51.8
Q ss_pred CCCCCcchhhhhcccccCCCCCCCCccccccCCCCChhhhhhhhhh--hccccccccc--ccccccccccccCCCCch
Q 044596 49 ENPFSPKAYLMRYWDKTVSKNSPKPQFLLSKASPLNAVETATYSKL--AEQKTLSSVL--PSFCSSAKLFCFPDLSPS 122 (644)
Q Consensus 49 ~~pft~ka~~~ryw~~~~~~~~p~~~f~~~k~spl~~~~~a~~~~l--~~~~~~~~~~--~~~c~~a~l~c~~~~~~~ 122 (644)
.++|..+.+.-+|||=+|+-. ++|+-+|..|.. +..+-+-.| |+++-+..+- -..|--.-|+|.|++-.|
T Consensus 9 t~~~p~~~~~~~YW~~kiPv~---~~fi~s~~t~~~-vkr~c~Q~LIn~a~~Li~~kp~~~~~yRV~~~I~lp~L~~S 82 (153)
T PF13079_consen 9 TPSFPSTFYNDGYWNWKIPVS---QSFIESKKTPRK-VKRLCIQTLINAAEHLIQAKPDDENTYRVVCLISLPDLFNS 82 (153)
T ss_pred CCCCCCcccCCcceeEecccC---HHHHhccCCcHH-HHHHHHHHHHHHHHHHHhCCcCcCCceEEEEEEEcchhhhc
Confidence 478888888889999998864 678889988854 555666666 4455444443 348888889999999554
No 6
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=11.54 E-value=2.2e+02 Score=32.03 Aligned_cols=31 Identities=29% Similarity=0.589 Sum_probs=19.7
Q ss_pred eeEEEEEeeCCcCcc---ccceEEEEeeccCCCCC
Q 044596 577 VRVYEADLLDPKTKA---KINHGVAICHIDTSAWS 608 (644)
Q Consensus 577 TrvY~V~L~g~d~~~---ki~~AvAVCH~DTS~Wn 608 (644)
-.+-+|+|..+.-++ +| +|-.|||+|-..-+
T Consensus 15 l~i~ei~l~~P~~gEVlVri-~AtGVCHTD~~~~~ 48 (366)
T COG1062 15 LEIEEVDLDPPRAGEVLVRI-TATGVCHTDAHTLS 48 (366)
T ss_pred eEEEEEecCCCCCCeEEEEE-EEeeccccchhhhc
Confidence 345566665554332 44 69999999976544
No 7
>PF09899 DUF2126: Putative amidoligase enzyme (DUF2126); InterPro: IPR018667 This domain is found in bacterial transglutaminase and transglutaminase-like proteins. Their exact function is, as yet, unknown.
Probab=11.07 E-value=1.3e+02 Score=36.68 Aligned_cols=11 Identities=18% Similarity=0.534 Sum_probs=6.3
Q ss_pred ceeeecccCCc
Q 044596 555 QSVSCHQSLFP 565 (644)
Q Consensus 555 k~V~CH~~~YP 565 (644)
-.|+|....-|
T Consensus 700 ~~l~cNG~~vP 710 (819)
T PF09899_consen 700 YVLTCNGRRVP 710 (819)
T ss_pred EEEEECCEECC
Confidence 35667665544
No 8
>PF08121 Toxin_33: Waglerin family; InterPro: IPR012637 This family consists of the lethal peptides (waglerins) that are found in the venom of Trimeresurus wagleri (Wagler's pit viper) (Tropidolaemus wagleri). Waglerins are 22-24 residue lethal peptides and are competitive antagonist of the muscle nicotinic receptor (nAChR). Waglerin-1 possesses a distinctive selectivity for the alpha-epsilon interface binding site of the mouse nAChR [].; GO: 0030550 acetylcholine receptor inhibitor activity, 0005576 extracellular region
Probab=10.15 E-value=96 Score=21.25 Aligned_cols=8 Identities=38% Similarity=0.829 Sum_probs=6.8
Q ss_pred ceeeeeeC
Q 044596 625 EVCHWIFE 632 (644)
Q Consensus 625 pVCHfi~~ 632 (644)
|-||+||.
T Consensus 11 ppchyipr 18 (22)
T PF08121_consen 11 PPCHYIPR 18 (22)
T ss_pred CCccccCC
Confidence 78999986
No 9
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=9.93 E-value=1.9e+02 Score=31.96 Aligned_cols=16 Identities=19% Similarity=0.422 Sum_probs=14.0
Q ss_pred eEEEEeeccCCCCCCc
Q 044596 595 HGVAICHIDTSAWSQT 610 (644)
Q Consensus 595 ~AvAVCH~DTS~WnP~ 610 (644)
++..|||.|-..|.-+
T Consensus 36 ~~~GVChsDlH~~~G~ 51 (339)
T COG1064 36 EACGVCHTDLHVAKGD 51 (339)
T ss_pred EEEeecchhhhhhcCC
Confidence 6999999999998853
No 10
>TIGR00608 radc DNA repair protein radc. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=9.86 E-value=8.7e+02 Score=25.14 Aligned_cols=114 Identities=15% Similarity=0.103 Sum_probs=0.0
Q ss_pred cHHHHHHHhcCCCCchHHHHHHHHHHHhcc-CCCCCCcccccCchhhHHHHHhhhcCCceEEEEeecccCCcceEEEeee
Q 044596 467 NVNVLKEIFHASENSSMESIIKDALSECER-QPSKGETKRCIGSAEDMIDFATSVLGNSVTLRTTQNVQGSKQNIMIGSV 545 (644)
Q Consensus 467 kL~eIL~~Fsi~~~S~~A~~m~~TL~~CE~-~pi~GE~K~CaTSLESMiDFa~S~LG~nv~~~ST~~~~~s~q~~~v~~V 545 (644)
...++.+.-+| +...|.++...++.+.+ ...+-..+...+|.|+..+|....|+...+-.---.--.++.+ +-..
T Consensus 58 ~~~eL~~i~Gi--G~aka~~l~a~~El~rR~~~~~~~~~~~l~s~~~v~~~l~~~l~~~~~E~f~vl~Ld~~n~--li~~ 133 (218)
T TIGR00608 58 PPEELSSVPGI--GEAKAIQLKAAVELAKRYAKSRMLERPVIRSPEAAAEFLHTDLAHETREHFMVLFLDRKNR--LIAK 133 (218)
T ss_pred CHHHHHhCcCC--cHHHHHHHHHHHHHHHHHHhhhhccCCCCCCHHHHHHHHHHHhcCCCceEEEEEEECCCCc--EEEE
Q ss_pred eeecCCCccceeeecccCCcceeeEeeeeCceeEEEEEeeCCcCccccceEEEEeeccCCC
Q 044596 546 KGINGGKVTQSVSCHQSLFPYLLYYCHSVPKVRVYEADLLDPKTKAKINHGVAICHIDTSA 606 (644)
Q Consensus 546 ~~i~gg~~~k~V~CH~~~YPYaVfYCH~v~~TrvY~V~L~g~d~~~ki~~AvAVCH~DTS~ 606 (644)
..|.-|.++.+.++=+..|-.|+ ..-..+|.+||---|+
T Consensus 134 ~~i~~Gt~~~~~v~pReI~~~Al----------------------~~~A~~vIlaHNHPSG 172 (218)
T TIGR00608 134 EVVFIGTVNHVPVHPREIFKEAL----------------------KLSASALILAHNHPSG 172 (218)
T ss_pred EEeecCCCCeEEEcHHHHHHHHH----------------------HhhCCeEEEEeecCCC
Done!