Query 044596
Match_columns 644
No_of_seqs 193 out of 293
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 08:06:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044596.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044596hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vqc_A Hypothetical 13.2 kDa p 18.5 75 0.0026 28.1 3.0 34 467-502 31-65 (118)
2 1obb_A Maltase, alpha-glucosid 12.3 85 0.0029 34.4 2.1 40 595-639 169-208 (480)
3 3pqh_A Gene product 138; beta- 11.6 81 0.0028 29.2 1.4 39 594-643 19-57 (127)
4 3zqu_A Probable aromatic acid 7.0 4.6E+02 0.016 25.5 4.8 24 497-521 163-186 (209)
5 3u95_A Glycoside hydrolase, fa 5.3 3E+02 0.01 29.8 2.6 41 595-640 176-216 (477)
6 1fr3_A MOP, molybdate/tungstat 5.2 4E+02 0.014 19.9 2.6 24 613-637 42-65 (67)
7 3hgl_A Effector protein hopab2 5.1 6.2E+02 0.021 21.8 3.8 37 460-496 38-80 (85)
8 1kg1_A NIP1, necrosis inducing 5.1 2E+02 0.007 22.7 0.8 10 280-289 41-50 (60)
9 2keb_A DNA polymerase subunit 4.9 4.4E+02 0.015 23.5 2.9 56 460-523 23-78 (101)
10 3tjy_A Effector protein hopab3 4.9 6.4E+02 0.022 22.0 3.8 38 460-497 36-79 (94)
No 1
>2vqc_A Hypothetical 13.2 kDa protein; winged-helix, crenarchaeal, DNA-binding protein, thermo protein, sulfolobus spindle virus; 2.3A {Sulfolobus virus-like particle SSV1} SCOP: a.4.5.78
Probab=18.54 E-value=75 Score=28.10 Aligned_cols=34 Identities=29% Similarity=0.431 Sum_probs=26.4
Q ss_pred cHHHHHHHhcCCCCchHHHHHHHHHHH-hccCCCCCC
Q 044596 467 NVNVLKEIFHASENSSMESIIKDALSE-CERQPSKGE 502 (644)
Q Consensus 467 kL~eIL~~Fsi~~~S~~A~~m~~TL~~-CE~~pi~GE 502 (644)
.|.+||..|-|+. +.|-.|+.||+. ||+-|.+-|
T Consensus 31 sledilaqfeis~--~sayniqr~l~~ice~hpdece 65 (118)
T 2vqc_A 31 TLEDILAQFEISV--PSAYNIQRALKAICERHPDECE 65 (118)
T ss_dssp CHHHHHHHHCCCH--HHHHHHHHHHHHHHHHCTTTEE
T ss_pred cHHHHHHHheecc--chHhHHHHHHHHHHhcCCchhh
Confidence 4889999999864 566778888875 999876544
No 2
>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2
Probab=12.33 E-value=85 Score=34.36 Aligned_cols=40 Identities=18% Similarity=0.189 Sum_probs=32.2
Q ss_pred eEEEEeeccCCCCCCcchHHHhhCCCCCCcceeeeeeCCceEEee
Q 044596 595 HGVAICHIDTSAWSQTHGAFLALGSGPGRIEVCHWIFENDLTWTI 639 (644)
Q Consensus 595 ~AvAVCH~DTS~WnP~H~AF~~L~vkPG~~pVCHfi~~~~ivWvp 639 (644)
+.+.+||++-+ -.+.. +.||+.|.++. ...+.-||+.|+.
T Consensus 169 rviG~c~~~~~---~~~~l-~~lgv~~~~v~-~~v~GlNH~~w~~ 208 (480)
T 1obb_A 169 KAVGFCHGHYG---VMEIV-EKLGLEEEKVD-WQVAGVNHGIWLN 208 (480)
T ss_dssp EEEEECSGGGH---HHHHH-HHTTCCGGGEE-EEEEEETTEEEEE
T ss_pred cEEecCCCHHH---HHHHH-HHhCCCHHHce-EEEEeecchhhhh
Confidence 57999999886 45777 99999998753 4568889999983
No 3
>3pqh_A Gene product 138; beta-helix, OB-fold, phage baseplate, iron-binding, cell MEM piercing, viral protein; 1.29A {Bacteriophage PHI92}
Probab=11.56 E-value=81 Score=29.15 Aligned_cols=39 Identities=8% Similarity=0.133 Sum_probs=29.7
Q ss_pred ceEEEEeeccCCCCCCcchHHHhhCCCCCCcceeeeeeCCceEEeecCCC
Q 044596 594 NHGVAICHIDTSAWSQTHGAFLALGSGPGRIEVCHWIFENDLTWTIVDRM 643 (644)
Q Consensus 594 ~~AvAVCH~DTS~WnP~H~AF~~L~vkPG~~pVCHfi~~~~ivWvpa~~~ 643 (644)
.++|+||. +|..|++-++ ||+ ||=+=.+++.||+..+.+
T Consensus 19 S~gVvIa~--------~d~ryR~~gL-~GE--vaiY~~~G~~I~Lk~~gi 57 (127)
T 3pqh_A 19 SEKVIISN--------NKQTYASFDP-NGN--ISVYNTQGMKIDMTPNSI 57 (127)
T ss_dssp -CCEEEEE--------TTTEEEEECT-TSC--EEEEETTSCEEEEETTEE
T ss_pred cccEEEEe--------CCcccccCCC-CCc--EEEEcCCCCEEEEecCCE
Confidence 46788887 3667888888 996 666778999999887653
No 4
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=6.98 E-value=4.6e+02 Score=25.49 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=20.1
Q ss_pred CCCCCCcccccCchhhHHHHHhhhc
Q 044596 497 QPSKGETKRCIGSAEDMIDFATSVL 521 (644)
Q Consensus 497 ~pi~GE~K~CaTSLESMiDFa~S~L 521 (644)
||+.|. -.+..|+|+|+||++.++
T Consensus 163 pp~~g~-ya~p~~iediv~~vv~r~ 186 (209)
T 3zqu_A 163 PAAPGF-YHQPQSVEDLVDFVVARI 186 (209)
T ss_dssp CSCCCC-TTCCCSHHHHHHHHHHHH
T ss_pred CCCccc-ccCCCCHHHHHHHHHHHH
Confidence 777776 569999999999998764
No 5
>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*
Probab=5.27 E-value=3e+02 Score=29.76 Aligned_cols=41 Identities=20% Similarity=0.202 Sum_probs=30.6
Q ss_pred eEEEEeeccCCCCCCcchHHHhhCCCCCCcceeeeeeCCceEEeec
Q 044596 595 HGVAICHIDTSAWSQTHGAFLALGSGPGRIEVCHWIFENDLTWTIV 640 (644)
Q Consensus 595 ~AvAVCH~DTS~WnP~H~AF~~L~vkPG~~pVCHfi~~~~ivWvpa 640 (644)
+.|.+||.=.. - +-....||+.|-++ .+.+..-||+.|+..
T Consensus 176 k~vGlC~~~~~---~-~~~~~~Lg~~~~~v-~~~~~GlNH~~w~~~ 216 (477)
T 3u95_A 176 NIIGFCHGVAG---V-YEVFERLGLDPEEV-DWQVAGVNHGIWLNR 216 (477)
T ss_dssp CEEEECCGGGH---H-HHHHHHTTCCGGGE-EEEEEEETTEEEEEE
T ss_pred CeEEECCCHHH---H-HHHHHHhCCCHHHc-EEEEeecCCCeeeee
Confidence 47999996432 1 33567899999775 577899999999863
No 6
>1fr3_A MOP, molybdate/tungstate binding protein; molybdate homeostasis, metal binding protein; 1.50A {Sporomusa ovata} SCOP: b.40.6.1
Probab=5.23 E-value=4e+02 Score=19.87 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=17.3
Q ss_pred HHHhhCCCCCCcceeeeeeCCceEE
Q 044596 613 AFLALGSGPGRIEVCHWIFENDLTW 637 (644)
Q Consensus 613 AF~~L~vkPG~~pVCHfi~~~~ivW 637 (644)
+.+.|+++||+ +|+=.+...+++.
T Consensus 42 s~~~l~L~~G~-~V~~~ika~~v~l 65 (67)
T 1fr3_A 42 SVADLDLVPGD-KVTALVKATEMEV 65 (67)
T ss_dssp HHHHHTCCTTC-EEEEEECGGGCEE
T ss_pred HHHhCCCCCCC-EEEEEEecceEEE
Confidence 66789999997 6766665555554
No 7
>3hgl_A Effector protein hopab2; five helices, hypersensitive response elicitation, ligase, secreted, UBL conjugation, UBL conjugation pathway; 1.90A {Pseudomonas syringae PV} PDB: 3hgk_E
Probab=5.09 E-value=6.2e+02 Score=21.81 Aligned_cols=37 Identities=22% Similarity=0.379 Sum_probs=27.6
Q ss_pred CCCCCcccHHHHHHHh------cCCCCchHHHHHHHHHHHhcc
Q 044596 460 KLPFSSSNVNVLKEIF------HASENSSMESIIKDALSECER 496 (644)
Q Consensus 460 sIPFSs~kL~eIL~~F------si~~~S~~A~~m~~TL~~CE~ 496 (644)
.|-||--...-+++.| +|..+|.+|...+.+|+.-.+
T Consensus 38 ~valsr~e~~il~qHFPnm~~~Gi~~~S~LA~~lR~alrr~v~ 80 (85)
T 3hgl_A 38 AVAFSRVEQNIFRQHFPNMPMHGISRDSELAIELRGALRRAVH 80 (85)
T ss_dssp CCCCCHHHHHHHHHHCTTHHHHCCCTTCHHHHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHHHHHChhhhhccCCCCCHHHHHHHHHHHHHHH
Confidence 3445555555566666 899999999999999987654
No 8
>1kg1_A NIP1, necrosis inducing protein 1; antiparalel beta sheets, toxin; NMR {Rhynchosporium secalis} SCOP: g.70.1.1
Probab=5.07 E-value=2e+02 Score=22.66 Aligned_cols=10 Identities=60% Similarity=1.102 Sum_probs=6.9
Q ss_pred cccccccCCC
Q 044596 280 FTSYGEAGNA 289 (644)
Q Consensus 280 F~~YG~~gN~ 289 (644)
.-+||++|||
T Consensus 41 lcsygeggng 50 (60)
T 1kg1_A 41 LCSYGEGGNG 50 (60)
T ss_dssp ECCBCTTSSC
T ss_pred EEeecCCCCc
Confidence 4567777776
No 9
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=4.91 E-value=4.4e+02 Score=23.48 Aligned_cols=56 Identities=18% Similarity=0.247 Sum_probs=39.4
Q ss_pred CCCCCcccHHHHHHHhcCCCCchHHHHHHHHHHHhccCCCCCCcccccCchhhHHHHHhhhcCC
Q 044596 460 KLPFSSSNVNVLKEIFHASENSSMESIIKDALSECERQPSKGETKRCIGSAEDMIDFATSVLGN 523 (644)
Q Consensus 460 sIPFSs~kL~eIL~~Fsi~~~S~~A~~m~~TL~~CE~~pi~GE~K~CaTSLESMiDFa~S~LG~ 523 (644)
.++.|-+.|.+-|+.|+|.++. +.+.+-++.|..-.+. ++.. .|..+-|+++..|.
T Consensus 23 ~~~Vsae~L~eEfdefGi~~~d---~VldKc~ELC~~y~ld-a~e~----VeeWmAFsts~~g~ 78 (101)
T 2keb_A 23 SMSASAQQLAEELQIFGLDCEE---ALIEKLVELCVQYGQN-EEGM----VGELIAFCTSTHKV 78 (101)
T ss_dssp -CCCCHHHHHHHHHHHTCBCCH---HHHHHHHHHHHHHTCC-HHHH----HHHHHHHHHHHTCS
T ss_pred hhhccHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCCC-HHHH----HHHHHHHHHhcCCC
Confidence 4456778999999999998766 5788899999876553 2222 25666787775543
No 10
>3tjy_A Effector protein hopab3; type III effector, hoppmal, structural genomics, PSI-biology; HET: MSE; 1.70A {Pseudomonas syringae PV} PDB: 3svi_A
Probab=4.91 E-value=6.4e+02 Score=22.02 Aligned_cols=38 Identities=24% Similarity=0.397 Sum_probs=28.9
Q ss_pred CCCCCcccHHHHHHHh------cCCCCchHHHHHHHHHHHhccC
Q 044596 460 KLPFSSSNVNVLKEIF------HASENSSMESIIKDALSECERQ 497 (644)
Q Consensus 460 sIPFSs~kL~eIL~~F------si~~~S~~A~~m~~TL~~CE~~ 497 (644)
.|-||--...-+|+.| +|..+|.+|...+.+|+.-.+.
T Consensus 36 ~valsr~eq~Il~qHFPnM~~~gI~~~seLA~elR~aLrrav~Q 79 (94)
T 3tjy_A 36 EMILSRAEQNVFLQHFPDMLPCGIDRNSELAIALREALRRADSQ 79 (94)
T ss_dssp CCCCCHHHHHHHHHHCTTHHHHCCCTTSHHHHHHHHHHHHHHC-
T ss_pred chhhhHHHHHHHHHHCcccccccCCCccHHHHHHHHHHHHHHHH
Confidence 4445555566677777 8999999999999999987653
Done!