Query 044597
Match_columns 341
No_of_seqs 265 out of 2697
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 04:52:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044597.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044597hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 99.9 8.5E-22 1.8E-26 195.5 10.3 128 1-131 432-627 (889)
2 PLN00113 leucine-rich repeat r 99.8 1E-19 2.2E-24 187.4 11.0 239 69-316 86-367 (968)
3 PLN00113 leucine-rich repeat r 99.8 2.8E-19 6.1E-24 184.1 10.9 231 75-316 139-391 (968)
4 PLN03210 Resistant to P. syrin 99.8 4.7E-18 1E-22 176.4 14.9 205 86-316 600-836 (1153)
5 KOG0444 Cytoskeletal regulator 99.8 6.9E-21 1.5E-25 174.9 -5.9 233 70-316 120-373 (1255)
6 KOG0444 Cytoskeletal regulator 99.7 6.6E-19 1.4E-23 162.1 -3.5 226 68-315 95-326 (1255)
7 PLN03210 Resistant to P. syrin 99.7 2E-16 4.3E-21 164.4 13.1 59 257-316 846-904 (1153)
8 KOG0472 Leucine-rich repeat pr 99.7 8.9E-20 1.9E-24 159.6 -11.0 232 68-316 60-308 (565)
9 KOG0472 Leucine-rich repeat pr 99.6 9E-18 2E-22 147.2 -3.9 136 172-316 400-539 (565)
10 KOG4194 Membrane glycoprotein 99.6 7E-17 1.5E-21 147.7 -2.3 232 70-312 167-446 (873)
11 KOG4194 Membrane glycoprotein 99.6 1.7E-15 3.7E-20 138.7 3.8 217 79-316 81-328 (873)
12 KOG0618 Serine/threonine phosp 99.4 1.9E-15 4.2E-20 144.8 -6.3 216 76-316 241-487 (1081)
13 PRK15387 E3 ubiquitin-protein 99.4 5.6E-13 1.2E-17 130.6 9.7 75 235-316 382-456 (788)
14 KOG0617 Ras suppressor protein 99.4 5.1E-15 1.1E-19 116.0 -6.5 160 74-303 31-194 (264)
15 KOG0617 Ras suppressor protein 99.4 7.1E-15 1.5E-19 115.2 -6.3 154 59-233 39-194 (264)
16 PRK15370 E3 ubiquitin-protein 99.4 4.6E-13 1E-17 131.7 4.4 56 257-316 367-426 (754)
17 KOG0618 Serine/threonine phosp 99.3 1.2E-14 2.6E-19 139.5 -8.3 214 69-294 257-489 (1081)
18 PRK15370 E3 ubiquitin-protein 99.3 1.5E-12 3.4E-17 128.0 4.0 198 76-316 199-399 (754)
19 PRK15387 E3 ubiquitin-protein 99.2 1.2E-10 2.6E-15 114.5 12.1 47 79-131 204-251 (788)
20 cd00116 LRR_RI Leucine-rich re 99.2 6.8E-12 1.5E-16 113.1 0.8 224 73-316 20-289 (319)
21 KOG4237 Extracellular matrix p 99.1 6.1E-12 1.3E-16 110.7 -0.2 215 71-292 64-357 (498)
22 KOG4658 Apoptotic ATPase [Sign 99.1 2E-11 4.4E-16 122.1 3.1 92 87-192 559-651 (889)
23 cd00116 LRR_RI Leucine-rich re 99.0 5.7E-11 1.2E-15 107.1 -0.7 226 74-316 49-318 (319)
24 KOG3207 Beta-tubulin folding c 98.9 2.9E-10 6.3E-15 101.5 1.5 228 73-318 118-367 (505)
25 KOG0532 Leucine-rich repeat (L 98.8 7.8E-11 1.7E-15 108.3 -5.3 120 81-223 80-201 (722)
26 KOG4237 Extracellular matrix p 98.8 4.6E-10 1E-14 99.1 -1.0 166 68-242 83-353 (498)
27 KOG1259 Nischarin, modulator o 98.8 5.2E-10 1.1E-14 95.6 -1.6 214 70-299 176-416 (490)
28 KOG3207 Beta-tubulin folding c 98.8 1.4E-09 3E-14 97.2 0.7 36 96-131 118-155 (505)
29 PF14580 LRR_9: Leucine-rich r 98.8 1.4E-09 3E-14 88.2 0.5 124 96-242 16-147 (175)
30 KOG0532 Leucine-rich repeat (L 98.7 1.5E-09 3.2E-14 100.1 -1.0 167 52-242 94-267 (722)
31 COG4886 Leucine-rich repeat (L 98.7 1.5E-08 3.3E-13 94.2 5.2 183 86-293 104-289 (394)
32 PF14580 LRR_9: Leucine-rich r 98.6 4.8E-09 1E-13 85.1 0.0 128 71-220 14-149 (175)
33 KOG1259 Nischarin, modulator o 98.6 2.6E-09 5.6E-14 91.4 -1.6 124 97-242 282-406 (490)
34 COG4886 Leucine-rich repeat (L 98.6 3.5E-08 7.5E-13 91.8 4.0 189 103-316 97-288 (394)
35 KOG2120 SCF ubiquitin ligase, 98.6 2.5E-09 5.4E-14 91.3 -4.3 181 100-318 186-376 (419)
36 PF13855 LRR_8: Leucine rich r 98.5 1.2E-07 2.6E-12 63.2 3.3 56 76-131 1-58 (61)
37 KOG2120 SCF ubiquitin ligase, 98.4 5.8E-09 1.3E-13 89.1 -5.7 137 153-316 206-349 (419)
38 KOG4341 F-box protein containi 98.3 1.2E-07 2.5E-12 84.8 -1.3 141 180-325 291-446 (483)
39 KOG0531 Protein phosphatase 1, 98.2 1.9E-07 4.1E-12 87.4 -0.8 130 70-223 89-220 (414)
40 KOG1909 Ran GTPase-activating 98.2 3.7E-07 8E-12 79.8 0.1 228 72-316 26-309 (382)
41 PLN03150 hypothetical protein; 98.2 4.6E-06 1E-10 81.9 7.3 105 101-222 420-526 (623)
42 KOG0531 Protein phosphatase 1, 98.1 1.4E-07 3E-12 88.3 -3.9 126 74-223 70-198 (414)
43 PLN03150 hypothetical protein; 98.1 5.2E-06 1.1E-10 81.5 6.8 100 124-242 420-522 (623)
44 KOG2982 Uncharacterized conser 98.1 4.1E-07 9E-12 78.0 -1.2 59 254-313 221-287 (418)
45 PF13855 LRR_8: Leucine rich r 97.9 7.9E-06 1.7E-10 54.3 2.3 53 184-242 2-56 (61)
46 KOG1909 Ran GTPase-activating 97.9 2.2E-06 4.7E-11 75.1 -0.7 190 96-292 89-309 (382)
47 PF12799 LRR_4: Leucine Rich r 97.9 1.2E-05 2.7E-10 49.3 2.6 32 100-131 2-33 (44)
48 PF12799 LRR_4: Leucine Rich r 97.8 2.4E-05 5.2E-10 48.0 3.5 39 76-115 1-40 (44)
49 PRK15386 type III secretion pr 97.8 8.4E-05 1.8E-09 68.0 7.5 32 257-291 156-187 (426)
50 PRK15386 type III secretion pr 97.7 0.00012 2.7E-09 67.0 7.0 51 75-131 51-103 (426)
51 KOG3665 ZYG-1-like serine/thre 97.6 7.1E-05 1.5E-09 73.8 4.8 35 96-131 170-204 (699)
52 KOG1859 Leucine-rich repeat pr 97.6 2.6E-06 5.7E-11 81.3 -5.1 124 78-226 166-294 (1096)
53 KOG2982 Uncharacterized conser 97.5 5.7E-05 1.2E-09 65.1 2.4 156 155-316 69-260 (418)
54 KOG3665 ZYG-1-like serine/thre 97.5 2.5E-05 5.4E-10 77.0 0.2 130 121-266 121-259 (699)
55 KOG1859 Leucine-rich repeat pr 97.4 3.9E-06 8.5E-11 80.1 -6.3 161 91-267 102-289 (1096)
56 KOG4579 Leucine-rich repeat (L 97.0 7.2E-05 1.6E-09 57.2 -2.0 83 96-193 50-133 (177)
57 KOG4341 F-box protein containi 96.9 4.7E-05 1E-09 68.5 -4.0 229 77-316 139-412 (483)
58 PF00560 LRR_1: Leucine Rich R 96.8 0.00071 1.5E-08 34.6 1.2 22 100-121 1-22 (22)
59 KOG1644 U2-associated snRNP A' 96.7 0.0028 6E-08 51.9 5.0 100 158-267 43-150 (233)
60 KOG2123 Uncharacterized conser 96.7 3.3E-05 7.1E-10 66.0 -6.6 112 211-325 19-138 (388)
61 KOG1644 U2-associated snRNP A' 96.3 0.0086 1.9E-07 49.1 5.5 31 100-131 43-73 (233)
62 COG5238 RNA1 Ran GTPase-activa 95.9 0.0031 6.7E-08 54.1 1.2 41 153-193 88-130 (388)
63 KOG2123 Uncharacterized conser 95.8 0.00056 1.2E-08 58.6 -3.7 81 96-189 38-123 (388)
64 KOG2739 Leucine-rich acidic nu 95.5 0.0022 4.7E-08 54.5 -1.4 12 120-131 63-74 (260)
65 KOG4579 Leucine-rich repeat (L 95.3 0.0031 6.7E-08 48.5 -0.9 83 74-168 51-134 (177)
66 PF13504 LRR_7: Leucine rich r 95.3 0.011 2.3E-07 28.0 1.3 17 99-115 1-17 (17)
67 KOG2739 Leucine-rich acidic nu 95.2 0.013 2.8E-07 50.0 2.3 108 73-192 40-152 (260)
68 KOG1947 Leucine rich repeat pr 94.9 0.0019 4.1E-08 61.5 -4.0 89 96-194 211-306 (482)
69 PF13306 LRR_5: Leucine rich r 94.7 0.053 1.2E-06 41.4 4.4 59 72-131 8-67 (129)
70 KOG3864 Uncharacterized conser 94.3 0.0053 1.1E-07 50.3 -2.0 62 255-316 123-187 (221)
71 KOG1947 Leucine rich repeat pr 93.5 0.0029 6.4E-08 60.2 -5.9 111 155-270 186-308 (482)
72 smart00370 LRR Leucine-rich re 93.4 0.07 1.5E-06 28.2 2.0 21 98-118 1-21 (26)
73 smart00369 LRR_TYP Leucine-ric 93.4 0.07 1.5E-06 28.2 2.0 21 98-118 1-21 (26)
74 PF13306 LRR_5: Leucine rich r 92.5 0.12 2.6E-06 39.5 3.0 86 89-191 2-89 (129)
75 COG5238 RNA1 Ran GTPase-activa 91.2 0.14 3E-06 44.3 2.1 187 96-296 89-317 (388)
76 KOG3864 Uncharacterized conser 91.0 0.034 7.3E-07 45.7 -1.7 16 153-168 121-136 (221)
77 smart00365 LRR_SD22 Leucine-ri 80.5 1.3 2.9E-05 23.5 1.6 17 98-114 1-17 (26)
78 KOG0473 Leucine-rich repeat pr 78.1 0.16 3.5E-06 42.9 -3.7 58 73-131 39-97 (326)
79 smart00367 LRR_CC Leucine-rich 77.1 1.3 2.9E-05 23.2 0.9 15 281-295 2-16 (26)
80 PF13516 LRR_6: Leucine Rich r 76.4 1.7 3.6E-05 22.2 1.2 16 98-113 1-16 (24)
81 smart00364 LRR_BAC Leucine-ric 76.1 1.6 3.6E-05 23.1 1.1 18 99-116 2-19 (26)
82 KOG0473 Leucine-rich repeat pr 68.8 0.26 5.7E-06 41.6 -4.5 61 71-132 60-121 (326)
83 smart00368 LRR_RI Leucine rich 66.3 4.4 9.6E-05 21.7 1.5 14 99-112 2-15 (28)
84 cd04443 DEP_GPR155 DEP (Dishev 54.3 16 0.00036 25.6 3.0 36 1-38 35-70 (83)
85 PF14162 YozD: YozD-like prote 54.3 16 0.00034 22.8 2.4 20 16-35 10-29 (57)
86 COG5626 Uncharacterized small 41.2 26 0.00056 24.5 2.2 20 3-22 53-72 (97)
87 cd04440 DEP_2_P-Rex DEP (Dishe 39.9 39 0.00085 24.3 3.1 36 1-38 42-77 (93)
88 cd04441 DEP_2_DEP6 DEP (Dishev 38.7 40 0.00086 23.8 2.9 36 1-38 37-72 (85)
89 cd04438 DEP_dishevelled DEP (D 38.0 53 0.0011 23.1 3.5 34 2-38 35-70 (84)
90 cd04449 DEP_DEPDC5-like DEP (D 37.5 51 0.0011 23.0 3.4 36 2-38 35-70 (83)
91 cd04448 DEP_PIKfyve DEP (Dishe 33.3 55 0.0012 22.8 3.0 37 1-39 33-69 (81)
92 PF10052 DUF2288: Protein of u 31.0 59 0.0013 23.4 2.8 22 2-23 51-72 (93)
93 cd04442 DEP_1_DEP6 DEP (Dishev 27.8 82 0.0018 22.0 3.1 36 1-38 33-68 (82)
94 KOG3763 mRNA export factor TAP 27.1 26 0.00056 33.8 0.6 40 254-293 241-282 (585)
95 PF00610 DEP: Domain found in 26.2 79 0.0017 21.1 2.8 32 6-39 26-60 (74)
96 smart00422 HTH_MERR helix_turn 24.2 16 0.00034 24.2 -1.1 12 3-14 17-28 (70)
97 cd04761 HTH_MerR-SF Helix-Turn 23.2 57 0.0012 19.5 1.5 13 2-14 16-28 (49)
98 PF05725 FNIP: FNIP Repeat; I 23.2 1.4E+02 0.0031 17.7 3.2 9 210-218 11-19 (44)
99 cd04444 DEP_PLEK2 DEP (Disheve 22.2 69 0.0015 23.7 1.9 41 1-43 36-76 (109)
100 cd04439 DEP_1_P-Rex DEP (Dishe 22.0 1.1E+02 0.0025 21.2 2.9 36 1-38 33-68 (81)
101 PF08362 TetR_C_3: YcdC-like p 21.2 58 0.0013 25.5 1.5 13 2-14 75-87 (143)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.86 E-value=8.5e-22 Score=195.47 Aligned_cols=128 Identities=27% Similarity=0.383 Sum_probs=95.9
Q ss_pred ChHHHHHHcCCCCCC-----cHHHHHHHHHHHHHCCCcccccCCCCCcceecccCCcchhhHHhhhc-----cCCc----
Q 044597 1 QLYQLWIAEGFIPDN-----NEAITEKYLEQLINGAFVDAGKRSDISRINTSSIPGSCSPALLTVAF-----KGEF---- 66 (341)
Q Consensus 1 ~Li~~WiaeG~i~~~-----~e~~g~~~l~eL~~~~~lq~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~~~---- 66 (341)
+||.||||||||++. .+++|++|+.+|+++++++..+.. ++..+++|||..|..++.++. ....
T Consensus 432 ~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~ 509 (889)
T KOG4658|consen 432 KLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSD 509 (889)
T ss_pred HHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEEEC
Confidence 589999999999883 389999999999999999987765 666788888877776555433 0000
Q ss_pred --------------------------------------------------c--cccccCCcceeeeeccC-C-CCcccCh
Q 044597 67 --------------------------------------------------I--ISPIMDQEVRLRENSII-P-SLKSLPS 92 (341)
Q Consensus 67 --------------------------------------------------~--~~~~~~~l~~Lr~L~l~-~-~~~~lp~ 92 (341)
. ....+..+++||+|+++ + .+.++|+
T Consensus 510 ~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~ 589 (889)
T KOG4658|consen 510 GVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS 589 (889)
T ss_pred CcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh
Confidence 0 00115567778888886 2 6677888
Q ss_pred hhhhcCCCccEEecCCccccccchhhcccccCceeeecC
Q 044597 93 SFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGA 131 (341)
Q Consensus 93 ~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~ 131 (341)
+| ++|.+||||+++++.+..+|.++++|++|.+|++..
T Consensus 590 ~I-~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~ 627 (889)
T KOG4658|consen 590 SI-GELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEV 627 (889)
T ss_pred HH-hhhhhhhcccccCCCccccchHHHHHHhhheecccc
Confidence 88 888888888888888888888888888888888776
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.80 E-value=1e-19 Score=187.36 Aligned_cols=239 Identities=17% Similarity=0.205 Sum_probs=114.3
Q ss_pred ccccCCcceeeeeccC-CCCc-ccChhhhhcCCCccEEecCCcccc-----------------------ccchhhccccc
Q 044597 69 SPIMDQEVRLRENSII-PSLK-SLPSSFLSSLLNLYTLEMPFSYID-----------------------HTADEFWKMSK 123 (341)
Q Consensus 69 ~~~~~~l~~Lr~L~l~-~~~~-~lp~~if~~L~~L~~L~Ls~~~~~-----------------------~lp~~i~~L~~ 123 (341)
.+.+..+++|++|+++ +.+. .+|..+|.++++|++|++++|.+. .+|..++.+++
T Consensus 86 ~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~ 165 (968)
T PLN00113 86 SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSS 165 (968)
T ss_pred ChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCC
Confidence 3445666777777776 3443 567666556666666666666432 33444445555
Q ss_pred CceeeecCc----CCCCCC------ceEEeCC-----CcchhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEE
Q 044597 124 LRYLNFGAI----TLPAHP------GKYSLHP-----CCSTEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESL 188 (341)
Q Consensus 124 L~~L~l~~~----~lp~~i------~~~~~~~-----~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L 188 (341)
|++|+++++ .+|..+ +.+.+++ .. +.. ++++++|+.|+++++. ....+|..++.+++|+.|
T Consensus 166 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~-l~~l~~L~~L~L~~n~--l~~~~p~~l~~l~~L~~L 241 (968)
T PLN00113 166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI-PRE-LGQMKSLKWIYLGYNN--LSGEIPYEIGGLTSLNHL 241 (968)
T ss_pred CCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcC-ChH-HcCcCCccEEECcCCc--cCCcCChhHhcCCCCCEE
Confidence 555555441 122211 2222211 11 222 4444444444444432 122333344444444444
Q ss_pred EEEeCCCCCCCCccCc-ccccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeC--cEeeecCCCCCcccEEEEe
Q 044597 189 KLANESKMPRRSNTIL-AEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLG--RKLACSSDGFPKLKVLHLK 265 (341)
Q Consensus 189 ~l~~~~e~~~~l~~lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~l~ 265 (341)
++++|. ..+.+| .++.+ ++|+.|++++|.+....+..+..+++|++|+++.+. ...+.....+++|++|++.
T Consensus 242 ~L~~n~----l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~ 316 (968)
T PLN00113 242 DLVYNN----LTGPIPSSLGNL-KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLF 316 (968)
T ss_pred ECcCce----eccccChhHhCC-CCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECC
Confidence 444441 112334 44444 444555554444433333344444555555441111 1112222345556666655
Q ss_pred cCCCCCceeecCCCCCcccEEEEecCCCCCccccccCCCCCCcEEEEecCC
Q 044597 266 SMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLELWWPE 316 (341)
Q Consensus 266 ~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 316 (341)
++.-....+...+.+++|+.|.+.+|...+.+|..++.+++|+.|++++|.
T Consensus 317 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~ 367 (968)
T PLN00113 317 SNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN 367 (968)
T ss_pred CCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCe
Confidence 543333334444556677777777776444566666667777777776664
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.79 E-value=2.8e-19 Score=184.12 Aligned_cols=231 Identities=20% Similarity=0.235 Sum_probs=182.2
Q ss_pred cceeeeeccC-CCCc-ccChhhhhcCCCccEEecCCccc-cccchhhcccccCceeeecCc----CCCCCC------ceE
Q 044597 75 EVRLRENSII-PSLK-SLPSSFLSSLLNLYTLEMPFSYI-DHTADEFWKMSKLRYLNFGAI----TLPAHP------GKY 141 (341)
Q Consensus 75 l~~Lr~L~l~-~~~~-~lp~~if~~L~~L~~L~Ls~~~~-~~lp~~i~~L~~L~~L~l~~~----~lp~~i------~~~ 141 (341)
+.+|++|+++ +.+. .+|..+ +++++|++|++++|.+ ..+|..++++++|++|+++++ .+|..+ +.+
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 217 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDI-GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI 217 (968)
T ss_pred cCCCCEEECcCCcccccCChHH-hcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEE
Confidence 4555666665 2343 577777 9999999999999965 477888999999999999873 345444 455
Q ss_pred EeCC-----CcchhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCC-ccCc-ccccccCCcc
Q 044597 142 SLHP-----CCSTEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRS-NTIL-AEYQFPPSLT 214 (341)
Q Consensus 142 ~~~~-----~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l-~~lp-~~~~lp~~L~ 214 (341)
.+++ .. +.. ++++++|++|++++|. ....+|..++++++|+.|++++| .+ +.+| ++..+ ++|+
T Consensus 218 ~L~~n~l~~~~-p~~-l~~l~~L~~L~L~~n~--l~~~~p~~l~~l~~L~~L~L~~n-----~l~~~~p~~l~~l-~~L~ 287 (968)
T PLN00113 218 YLGYNNLSGEI-PYE-IGGLTSLNHLDLVYNN--LTGPIPSSLGNLKNLQYLFLYQN-----KLSGPIPPSIFSL-QKLI 287 (968)
T ss_pred ECcCCccCCcC-Chh-HhcCCCCCEEECcCce--eccccChhHhCCCCCCEEECcCC-----eeeccCchhHhhc-cCcC
Confidence 5543 34 556 9999999999999886 44577889999999999999998 45 4578 88899 9999
Q ss_pred EEEEEeecCCCCCCccCcCCCCCCeEEEEEeC--cEeeecCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCC
Q 044597 215 HLSFSNIELIDDPMPALEKLPVLQVLKLKYLG--RKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCA 292 (341)
Q Consensus 215 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~ 292 (341)
.|++++|.+....+..+..+++|+.|++..+. ...+.....+++|+.|+++++.-...++...+.+++|+.|++++|.
T Consensus 288 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~ 367 (968)
T PLN00113 288 SLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN 367 (968)
T ss_pred EEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCe
Confidence 99999999876777778999999999993222 2333445678999999999876555677777789999999999998
Q ss_pred CCCccccccCCCCCCcEEEEecCC
Q 044597 293 HLKRIPEQLWCLKSLNKLELWWPE 316 (341)
Q Consensus 293 ~l~~lp~~l~~l~~L~~L~l~~~~ 316 (341)
....+|..+..+++|+.|++.+|.
T Consensus 368 l~~~~p~~~~~~~~L~~L~l~~n~ 391 (968)
T PLN00113 368 LTGEIPEGLCSSGNLFKLILFSNS 391 (968)
T ss_pred eEeeCChhHhCcCCCCEEECcCCE
Confidence 656788888889999999999876
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.77 E-value=4.7e-18 Score=176.42 Aligned_cols=205 Identities=23% Similarity=0.258 Sum_probs=138.8
Q ss_pred CCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEEE
Q 044597 86 SLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIW 165 (341)
Q Consensus 86 ~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l~ 165 (341)
.++.+|..+ ...+|+.|+++++.+..+|.++..+++|++|++++...- .. +++ ++.+++|++|++.
T Consensus 600 ~l~~lP~~f--~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l----------~~-ip~-ls~l~~Le~L~L~ 665 (1153)
T PLN03210 600 PLRCMPSNF--RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNL----------KE-IPD-LSMATNLETLKLS 665 (1153)
T ss_pred CCCCCCCcC--CccCCcEEECcCccccccccccccCCCCCEEECCCCCCc----------Cc-CCc-cccCCcccEEEec
Confidence 344455444 345666666666666666666666666776666651100 22 455 7788899999998
Q ss_pred eecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc-ccccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEEEE
Q 044597 166 GDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL-AEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKY 244 (341)
Q Consensus 166 ~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~ 244 (341)
+|. ....+|..++.+++|+.|++++|. .++.+| .+ .+ ++|+.|++++|.. ...++. ..++|++|++..
T Consensus 666 ~c~--~L~~lp~si~~L~~L~~L~L~~c~----~L~~Lp~~i-~l-~sL~~L~Lsgc~~-L~~~p~--~~~nL~~L~L~~ 734 (1153)
T PLN03210 666 DCS--SLVELPSSIQYLNKLEDLDMSRCE----NLEILPTGI-NL-KSLYRLNLSGCSR-LKSFPD--ISTNISWLDLDE 734 (1153)
T ss_pred CCC--CccccchhhhccCCCCEEeCCCCC----CcCccCCcC-CC-CCCCEEeCCCCCC-cccccc--ccCCcCeeecCC
Confidence 876 567788888889999999998877 777787 43 56 7777777777752 111111 123444444411
Q ss_pred eC-cEee------------------------------ecCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCC
Q 044597 245 LG-RKLA------------------------------CSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAH 293 (341)
Q Consensus 245 ~~-~~~~------------------------------~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~ 293 (341)
+. ..++ .....+++|+.|++++++.+..+|...+.+++|+.|++.+|..
T Consensus 735 n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~ 814 (1153)
T PLN03210 735 TAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCIN 814 (1153)
T ss_pred CccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCC
Confidence 11 0000 0112356888999998888888888888899999999999999
Q ss_pred CCccccccCCCCCCcEEEEecCC
Q 044597 294 LKRIPEQLWCLKSLNKLELWWPE 316 (341)
Q Consensus 294 l~~lp~~l~~l~~L~~L~l~~~~ 316 (341)
++.+|.++ ++++|+.|++++|.
T Consensus 815 L~~LP~~~-~L~sL~~L~Ls~c~ 836 (1153)
T PLN03210 815 LETLPTGI-NLESLESLDLSGCS 836 (1153)
T ss_pred cCeeCCCC-CccccCEEECCCCC
Confidence 99999776 68899999999986
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.76 E-value=6.9e-21 Score=174.93 Aligned_cols=233 Identities=19% Similarity=0.244 Sum_probs=165.7
Q ss_pred cccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecC--------cCCCCCC--
Q 044597 70 PIMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGA--------ITLPAHP-- 138 (341)
Q Consensus 70 ~~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~--------~~lp~~i-- 138 (341)
..+...+++.+|+++ ++|.++|.++|-+|.-|-+||||+|.++.+|+.+..|.+|++|+|++ ..+|.--
T Consensus 120 ~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL 199 (1255)
T KOG0444|consen 120 TNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSL 199 (1255)
T ss_pred hhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhh
Confidence 345556677788887 68899999988999999999999999999999999999999999988 2233211
Q ss_pred ceEEeCC------CcchhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc-ccccccC
Q 044597 139 GKYSLHP------CCSTEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL-AEYQFPP 211 (341)
Q Consensus 139 ~~~~~~~------~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp-~~~~lp~ 211 (341)
..+.+++ ++ |.. +..+.||+.++++.| ....+|..+-.+.+|+.|++++| .++++. ..+.. .
T Consensus 200 ~vLhms~TqRTl~N~-Pts-ld~l~NL~dvDlS~N---~Lp~vPecly~l~~LrrLNLS~N-----~iteL~~~~~~W-~ 268 (1255)
T KOG0444|consen 200 SVLHMSNTQRTLDNI-PTS-LDDLHNLRDVDLSEN---NLPIVPECLYKLRNLRRLNLSGN-----KITELNMTEGEW-E 268 (1255)
T ss_pred hhhhcccccchhhcC-CCc-hhhhhhhhhcccccc---CCCcchHHHhhhhhhheeccCcC-----ceeeeeccHHHH-h
Confidence 2222222 33 444 555566666666655 45556666666666666666666 566665 44555 6
Q ss_pred CccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeC---cEeeecCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEE
Q 044597 212 SLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLG---RKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVII 288 (341)
Q Consensus 212 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~---~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l 288 (341)
+|++|+++.|++ ...+.++++++.|+.|.++.+. +-++...+.+..|+.+...+ +.++-.|...+.+++|+.|.+
T Consensus 269 ~lEtLNlSrNQL-t~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L 346 (1255)
T KOG0444|consen 269 NLETLNLSRNQL-TVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKL 346 (1255)
T ss_pred hhhhhccccchh-ccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhcc
Confidence 677777777765 2334467777777777773222 22344556677777777776 678888888889999999999
Q ss_pred ecCCCCCccccccCCCCCCcEEEEecCC
Q 044597 289 NPCAHLKRIPEQLWCLKSLNKLELWWPE 316 (341)
Q Consensus 289 ~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 316 (341)
+.++ +-.+|.+|.-++-|+.|++..+|
T Consensus 347 ~~Nr-LiTLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 347 DHNR-LITLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred cccc-eeechhhhhhcCCcceeeccCCc
Confidence 9888 77899999999999999999988
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.69 E-value=6.6e-19 Score=162.05 Aligned_cols=226 Identities=18% Similarity=0.209 Sum_probs=121.4
Q ss_pred cccccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhh-cccccCceeeecCcCCCCCCceEEeCC
Q 044597 68 ISPIMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEF-WKMSKLRYLNFGAITLPAHPGKYSLHP 145 (341)
Q Consensus 68 ~~~~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i-~~L~~L~~L~l~~~~lp~~i~~~~~~~ 145 (341)
+++.+..+.-|..|+++ +.+++.|..+ .+-+++-+|+||+|+|+.+|.++ .+|.-|-+|||+++++-
T Consensus 95 iP~diF~l~dLt~lDLShNqL~EvP~~L-E~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe---------- 163 (1255)
T KOG0444|consen 95 IPTDIFRLKDLTILDLSHNQLREVPTNL-EYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE---------- 163 (1255)
T ss_pred CCchhcccccceeeecchhhhhhcchhh-hhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh----------
Confidence 34455556666666666 5666666666 66666666666666666666553 46666666666663221
Q ss_pred CcchhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeC-CCCCCCCccCc-ccccccCCccEEEEEeecC
Q 044597 146 CCSTEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANE-SKMPRRSNTIL-AEYQFPPSLTHLSFSNIEL 223 (341)
Q Consensus 146 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~-~e~~~~l~~lp-~~~~lp~~L~~L~l~~~~l 223 (341)
.. |+. +..+.+|++|.+++|.. ...-..-+..+++|+.|.+++. . .+..+| .+..+ .+|..++++.|.+
T Consensus 164 ~L-PPQ-~RRL~~LqtL~Ls~NPL--~hfQLrQLPsmtsL~vLhms~TqR----Tl~N~Ptsld~l-~NL~dvDlS~N~L 234 (1255)
T KOG0444|consen 164 ML-PPQ-IRRLSMLQTLKLSNNPL--NHFQLRQLPSMTSLSVLHMSNTQR----TLDNIPTSLDDL-HNLRDVDLSENNL 234 (1255)
T ss_pred hc-CHH-HHHHhhhhhhhcCCChh--hHHHHhcCccchhhhhhhcccccc----hhhcCCCchhhh-hhhhhccccccCC
Confidence 33 455 55666666666665531 1111122344555555555552 2 334455 55556 6666666666654
Q ss_pred CCCCCccCcCCCCCCeEEE-EEeCcEeeecCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCC-CCCcccccc
Q 044597 224 IDDPMPALEKLPVLQVLKL-KYLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCA-HLKRIPEQL 301 (341)
Q Consensus 224 ~~~~~~~l~~l~~L~~L~l-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~-~l~~lp~~l 301 (341)
...+..+.++++|+.|++ ++...++....+...+|++|+++. +.+..+|.....+++|+.|.+.++. ....+|++|
T Consensus 235 -p~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSr-NQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGI 312 (1255)
T KOG0444|consen 235 -PIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSR-NQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGI 312 (1255)
T ss_pred -CcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhcccc-chhccchHHHhhhHHHHHHHhccCcccccCCccch
Confidence 233344555666666666 222233333344455556666555 4455555555555555555555544 233355555
Q ss_pred CCCCCCcEEEEecC
Q 044597 302 WCLKSLNKLELWWP 315 (341)
Q Consensus 302 ~~l~~L~~L~l~~~ 315 (341)
+.+.+|+.+...++
T Consensus 313 GKL~~Levf~aanN 326 (1255)
T KOG0444|consen 313 GKLIQLEVFHAANN 326 (1255)
T ss_pred hhhhhhHHHHhhcc
Confidence 55555555554443
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.68 E-value=2e-16 Score=164.40 Aligned_cols=59 Identities=22% Similarity=0.271 Sum_probs=46.4
Q ss_pred CcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCccccccCCCCCCcEEEEecCC
Q 044597 257 PKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLELWWPE 316 (341)
Q Consensus 257 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 316 (341)
.+|++|++.+ +.++.+|...+.+++|+.|++.+|++++.+|..+..+++|+.+++++|+
T Consensus 846 ~nL~~L~Ls~-n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 846 TNISDLNLSR-TGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cccCEeECCC-CCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 3455555554 3455566566778999999999999999999888889999999999998
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.67 E-value=8.9e-20 Score=159.64 Aligned_cols=232 Identities=18% Similarity=0.179 Sum_probs=187.3
Q ss_pred cccccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecC---cCCCCCC-----
Q 044597 68 ISPIMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGA---ITLPAHP----- 138 (341)
Q Consensus 68 ~~~~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~---~~lp~~i----- 138 (341)
..+.+..+..+.+|.+. +.+.++|.+| +.+..+..|+.++|++..+|..++.+.+|+.|+.++ .++|+++
T Consensus 60 l~~dl~nL~~l~vl~~~~n~l~~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~ 138 (565)
T KOG0472|consen 60 LREDLKNLACLTVLNVHDNKLSQLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLD 138 (565)
T ss_pred ccHhhhcccceeEEEeccchhhhCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhh
Confidence 34456667777788777 6788888888 888888888888888888888888888888888887 5666666
Q ss_pred -ceEEeCC----CcchhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc-ccccccCC
Q 044597 139 -GKYSLHP----CCSTEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL-AEYQFPPS 212 (341)
Q Consensus 139 -~~~~~~~----~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp-~~~~lp~~ 212 (341)
......+ .. |++ +.++.+|.+|.+.++ ...++|+..-+++.|++|+...+ .++.+| .++.+ .+
T Consensus 139 l~dl~~~~N~i~sl-p~~-~~~~~~l~~l~~~~n---~l~~l~~~~i~m~~L~~ld~~~N-----~L~tlP~~lg~l-~~ 207 (565)
T KOG0472|consen 139 LEDLDATNNQISSL-PED-MVNLSKLSKLDLEGN---KLKALPENHIAMKRLKHLDCNSN-----LLETLPPELGGL-ES 207 (565)
T ss_pred hhhhhccccccccC-chH-HHHHHHHHHhhcccc---chhhCCHHHHHHHHHHhcccchh-----hhhcCChhhcch-hh
Confidence 1111111 34 555 888888888888887 67778877777999999998887 889999 99999 99
Q ss_pred ccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeCcE-eeec-CCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEec
Q 044597 213 LTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLGRK-LACS-SDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINP 290 (341)
Q Consensus 213 L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~ 290 (341)
|..|++..|.+ ..+|.|+.+..|++|+++.+..+ ++.. ...++++..|++++ +++++.|.++.-+.+|++|++++
T Consensus 208 L~~LyL~~Nki--~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRd-Nklke~Pde~clLrsL~rLDlSN 284 (565)
T KOG0472|consen 208 LELLYLRRNKI--RFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRD-NKLKEVPDEICLLRSLERLDLSN 284 (565)
T ss_pred hHHHHhhhccc--ccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccc-cccccCchHHHHhhhhhhhcccC
Confidence 99999999997 44558999999999999444322 2222 23689999999998 78999999998899999999999
Q ss_pred CCCCCccccccCCCCCCcEEEEecCC
Q 044597 291 CAHLKRIPEQLWCLKSLNKLELWWPE 316 (341)
Q Consensus 291 c~~l~~lp~~l~~l~~L~~L~l~~~~ 316 (341)
+. +..+|..++++ .|+.|.+.|+|
T Consensus 285 N~-is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 285 ND-ISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred Cc-cccCCcccccc-eeeehhhcCCc
Confidence 99 89999999999 99999999999
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.63 E-value=9e-18 Score=147.18 Aligned_cols=136 Identities=24% Similarity=0.207 Sum_probs=89.0
Q ss_pred hhHHHHHhcCCCCCCEE-EEEeCCCCCCCCccCc-ccccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeCcEe
Q 044597 172 QSLLSKSLCRLSCLESL-KLANESKMPRRSNTIL-AEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLGRKL 249 (341)
Q Consensus 172 ~~~l~~~l~~l~~L~~L-~l~~~~e~~~~l~~lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 249 (341)
..++|..+..++.+.+. .++.+ .++-+| .+..+ ++|..|++++|.+ ...+..++.+-.|+.|+++++.-..
T Consensus 400 L~elPk~L~~lkelvT~l~lsnn-----~isfv~~~l~~l-~kLt~L~L~NN~L-n~LP~e~~~lv~Lq~LnlS~NrFr~ 472 (565)
T KOG0472|consen 400 LCELPKRLVELKELVTDLVLSNN-----KISFVPLELSQL-QKLTFLDLSNNLL-NDLPEEMGSLVRLQTLNLSFNRFRM 472 (565)
T ss_pred HhhhhhhhHHHHHHHHHHHhhcC-----ccccchHHHHhh-hcceeeecccchh-hhcchhhhhhhhhheeccccccccc
Confidence 44555554444444332 23333 444455 67778 8888888888886 3444467777778888885542111
Q ss_pred ee-cCCCCCcccEEEEecCCCCCceeec-CCCCCcccEEEEecCCCCCccccccCCCCCCcEEEEecCC
Q 044597 250 AC-SSDGFPKLKVLHLKSMLWLEEWTMG-IKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLELWWPE 316 (341)
Q Consensus 250 ~~-~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 316 (341)
.. ..-....++.+-.++ ..+.+++.+ ...|.+|.+|++.++. +..+|+.++++++|++|+++|+|
T Consensus 473 lP~~~y~lq~lEtllas~-nqi~~vd~~~l~nm~nL~tLDL~nNd-lq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 473 LPECLYELQTLETLLASN-NQIGSVDPSGLKNMRNLTTLDLQNND-LQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred chHHHhhHHHHHHHHhcc-ccccccChHHhhhhhhcceeccCCCc-hhhCChhhccccceeEEEecCCc
Confidence 11 111122333333333 556666654 6689999999999998 88999999999999999999999
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.59 E-value=7e-17 Score=147.67 Aligned_cols=232 Identities=20% Similarity=0.234 Sum_probs=109.4
Q ss_pred cccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccch-hhcccccCceeeecCcC--------------
Q 044597 70 PIMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTAD-EFWKMSKLRYLNFGAIT-------------- 133 (341)
Q Consensus 70 ~~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~-~i~~L~~L~~L~l~~~~-------------- 133 (341)
+.++.-.++.+|++. +.|+.+-..-|..+.+|.+|.|+.|.+..+|. .|.+|++|+.|+|..+.
T Consensus 167 ~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~S 246 (873)
T KOG4194|consen 167 PSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPS 246 (873)
T ss_pred CCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchh
Confidence 445555666666666 45666655555666666666666666666654 34446666666666511
Q ss_pred -------------CCCCC-------ceEEeCCCc--chhh-hhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEE
Q 044597 134 -------------LPAHP-------GKYSLHPCC--STEE-ILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKL 190 (341)
Q Consensus 134 -------------lp~~i-------~~~~~~~~~--~~~~-~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l 190 (341)
+.+|. .++++.-+. .+.+ .+-.++.|+.|+++.|....+ -+++.+..++|++|++
T Consensus 247 l~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~ri--h~d~WsftqkL~~LdL 324 (873)
T KOG4194|consen 247 LQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRI--HIDSWSFTQKLKELDL 324 (873)
T ss_pred hhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhhee--ecchhhhcccceeEec
Confidence 11111 111111110 0000 123344444444444431111 1122334455555555
Q ss_pred EeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeCcEe-----eecCCCCCcccEEE
Q 044597 191 ANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLGRKL-----ACSSDGFPKLKVLH 263 (341)
Q Consensus 191 ~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~-----~~~~~~~~~L~~L~ 263 (341)
+.| .+++++ .+..+ +.|+.|+|+.|.+....-.+|..+.+|+.|+|..+...+ .....++++|++|.
T Consensus 325 s~N-----~i~~l~~~sf~~L-~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~ 398 (873)
T KOG4194|consen 325 SSN-----RITRLDEGSFRVL-SQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLR 398 (873)
T ss_pred ccc-----ccccCChhHHHHH-HHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhee
Confidence 555 555554 44455 555555555555433333344555555555551111111 11223456666666
Q ss_pred EecCCCCCceeec-CCCCCcccEEEEecCCCCCcc-ccccCCCCCCcEEEE
Q 044597 264 LKSMLWLEEWTMG-IKAMPKLECVIINPCAHLKRI-PEQLWCLKSLNKLEL 312 (341)
Q Consensus 264 l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l 312 (341)
+.+ ++++.++.. ...++.|+.|++.+++ +.++ |..+..+ .|++|.+
T Consensus 399 l~g-Nqlk~I~krAfsgl~~LE~LdL~~Na-iaSIq~nAFe~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 399 LTG-NQLKSIPKRAFSGLEALEHLDLGDNA-IASIQPNAFEPM-ELKELVM 446 (873)
T ss_pred ecC-ceeeecchhhhccCcccceecCCCCc-ceeecccccccc-hhhhhhh
Confidence 665 455555522 2245666666666666 3332 4444444 5555543
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.56 E-value=1.7e-15 Score=138.75 Aligned_cols=217 Identities=21% Similarity=0.244 Sum_probs=121.4
Q ss_pred eeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCC
Q 044597 79 RENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLP 157 (341)
Q Consensus 79 r~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~ 157 (341)
+.|+++ +.+..+.-..|.++++|+.+++.+|.+..+|.......+|+.|+|.++.++. -. -++ +..++
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~s---------v~-se~-L~~l~ 149 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISS---------VT-SEE-LSALP 149 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeecccccc---------cc-HHH-HHhHh
Confidence 456666 4566665555677888888888888777777766666777777777755552 11 333 66666
Q ss_pred CCceEEEEeecchhhhHHHH-HhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCCCCccCcCC
Q 044597 158 NLQNLRIWGDLSYYQSLLSK-SLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDDPMPALEKL 234 (341)
Q Consensus 158 ~L~~L~l~~~~~~~~~~l~~-~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l 234 (341)
.|+.|+++.| .+..++. ++..-.++++|++++| .++.+- .+..+ .+|..|.|+.|.++..+...|.++
T Consensus 150 alrslDLSrN---~is~i~~~sfp~~~ni~~L~La~N-----~It~l~~~~F~~l-nsL~tlkLsrNrittLp~r~Fk~L 220 (873)
T KOG4194|consen 150 ALRSLDLSRN---LISEIPKPSFPAKVNIKKLNLASN-----RITTLETGHFDSL-NSLLTLKLSRNRITTLPQRSFKRL 220 (873)
T ss_pred hhhhhhhhhc---hhhcccCCCCCCCCCceEEeeccc-----ccccccccccccc-chheeeecccCcccccCHHHhhhc
Confidence 6666666655 3444432 2444456666666665 555554 45556 566666666666655555556666
Q ss_pred CCCCeEEEEEeCcEee--ecCCCCCcccEEEEecC-----------------------CCCCceee-cCCCCCcccEEEE
Q 044597 235 PVLQVLKLKYLGRKLA--CSSDGFPKLKVLHLKSM-----------------------LWLEEWTM-GIKAMPKLECVII 288 (341)
Q Consensus 235 ~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~-----------------------~~l~~~~~-~~~~l~~L~~L~l 288 (341)
|.|+.|+|..+..++. ....++++|+.|.+... +++..+.. +...+++|+.|++
T Consensus 221 ~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~l 300 (873)
T KOG4194|consen 221 PKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDL 300 (873)
T ss_pred chhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhcc
Confidence 6666666632222221 22334555555554431 22222211 1123566666666
Q ss_pred ecCCCCCcc-ccccCCCCCCcEEEEecCC
Q 044597 289 NPCAHLKRI-PEQLWCLKSLNKLELWWPE 316 (341)
Q Consensus 289 ~~c~~l~~l-p~~l~~l~~L~~L~l~~~~ 316 (341)
+++. +.++ +++-...++|++|+++++.
T Consensus 301 S~Na-I~rih~d~WsftqkL~~LdLs~N~ 328 (873)
T KOG4194|consen 301 SYNA-IQRIHIDSWSFTQKLKELDLSSNR 328 (873)
T ss_pred chhh-hheeecchhhhcccceeEeccccc
Confidence 6665 3332 3333445666666666654
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.43 E-value=1.9e-15 Score=144.85 Aligned_cols=216 Identities=22% Similarity=0.243 Sum_probs=128.5
Q ss_pred ceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhC
Q 044597 76 VRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILG 154 (341)
Q Consensus 76 ~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~ 154 (341)
.++.+++++ +++..+|+.+ +.+.+|+.++..+|.+..+|..+..+.+|++|.+..+.+. -. ++. .+
T Consensus 241 ~nl~~~dis~n~l~~lp~wi-~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~----------yi-p~~-le 307 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLPEWI-GACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELE----------YI-PPF-LE 307 (1081)
T ss_pred ccceeeecchhhhhcchHHH-HhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhh----------hC-CCc-cc
Confidence 456777776 6778888777 8888888888888888888888888888888877763332 22 333 56
Q ss_pred CCCCCceEEEEeecchhhhHHHHHh-cCCC-CCCEEEEEeCCCCCCCCccCc-cc-ccccCCccEEEEEeecCCCCCCcc
Q 044597 155 RLPNLQNLRIWGDLSYYQSLLSKSL-CRLS-CLESLKLANESKMPRRSNTIL-AE-YQFPPSLTHLSFSNIELIDDPMPA 230 (341)
Q Consensus 155 ~l~~L~~L~l~~~~~~~~~~l~~~l-~~l~-~L~~L~l~~~~e~~~~l~~lp-~~-~~lp~~L~~L~l~~~~l~~~~~~~ 230 (341)
.++.|++|++..+ ....+|..+ .-.. .|+.|+.+.+ .+..+| +- ..+ +.|+.|.+.+|.++...++.
T Consensus 308 ~~~sL~tLdL~~N---~L~~lp~~~l~v~~~~l~~ln~s~n-----~l~~lp~~~e~~~-~~Lq~LylanN~Ltd~c~p~ 378 (1081)
T KOG0618|consen 308 GLKSLRTLDLQSN---NLPSLPDNFLAVLNASLNTLNVSSN-----KLSTLPSYEENNH-AALQELYLANNHLTDSCFPV 378 (1081)
T ss_pred ccceeeeeeehhc---cccccchHHHhhhhHHHHHHhhhhc-----cccccccccchhh-HHHHHHHHhcCcccccchhh
Confidence 6788888888776 344444432 1111 2444444444 445555 21 234 56667777777776666777
Q ss_pred CcCCCCCCeEEEEEeCc--EeeecCCCCCcccEEEEecCCCCCceeecC----------------------CCCCcccEE
Q 044597 231 LEKLPVLQVLKLKYLGR--KLACSSDGFPKLKVLHLKSMLWLEEWTMGI----------------------KAMPKLECV 286 (341)
Q Consensus 231 l~~l~~L~~L~l~~~~~--~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~----------------------~~l~~L~~L 286 (341)
+..+++|+.|+++|+.. -.......++.|+.|++++ ++++.++... ..++.|+.+
T Consensus 379 l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~l 457 (1081)
T KOG0618|consen 379 LVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVL 457 (1081)
T ss_pred hccccceeeeeecccccccCCHHHHhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEE
Confidence 77777777777755521 1112233556666666666 4455554443 345556666
Q ss_pred EEecCCCCCc--cccccCCCCCCcEEEEecCC
Q 044597 287 IINPCAHLKR--IPEQLWCLKSLNKLELWWPE 316 (341)
Q Consensus 287 ~l~~c~~l~~--lp~~l~~l~~L~~L~l~~~~ 316 (341)
+++.|. +.. +|..... ++|++|+++|+.
T Consensus 458 DlS~N~-L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 458 DLSCNN-LSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred ecccch-hhhhhhhhhCCC-cccceeeccCCc
Confidence 665444 333 2221111 566666666666
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.42 E-value=5.6e-13 Score=130.62 Aligned_cols=75 Identities=21% Similarity=0.066 Sum_probs=52.4
Q ss_pred CCCCeEEEEEeCcEeeecCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCccccccCCCCCCcEEEEec
Q 044597 235 PVLQVLKLKYLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLELWW 314 (341)
Q Consensus 235 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 314 (341)
.+|+.|+++.+... ......++|+.|++++ +.+..+|.. +.+|+.|++.+|. ++.+|..+.++++|+.|++++
T Consensus 382 ~~L~~LdLs~N~Lt--~LP~l~s~L~~LdLS~-N~LssIP~l---~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~ 454 (788)
T PRK15387 382 SGLKELIVSGNRLT--SLPVLPSELKELMVSG-NRLTSLPML---PSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEG 454 (788)
T ss_pred cccceEEecCCccc--CCCCcccCCCEEEccC-CcCCCCCcc---hhhhhhhhhccCc-ccccChHHhhccCCCeEECCC
Confidence 45677777332211 1112346788888887 346666532 4568888998887 888999899999999999999
Q ss_pred CC
Q 044597 315 PE 316 (341)
Q Consensus 315 ~~ 316 (341)
|+
T Consensus 455 N~ 456 (788)
T PRK15387 455 NP 456 (788)
T ss_pred CC
Confidence 98
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.37 E-value=5.1e-15 Score=115.96 Aligned_cols=160 Identities=22% Similarity=0.307 Sum_probs=98.7
Q ss_pred CcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhh
Q 044597 74 QEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEI 152 (341)
Q Consensus 74 ~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~ 152 (341)
.+.++..|.++ +++..+|+.| ..|++|++|++++|.++++|.++..|++|+.|++..
T Consensus 31 ~~s~ITrLtLSHNKl~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgm--------------------- 88 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM--------------------- 88 (264)
T ss_pred chhhhhhhhcccCceeecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecch---------------------
Confidence 34444555555 5666666666 666666666666666666666666666666665432
Q ss_pred hCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCc--cCc-ccccccCCccEEEEEeecCCCCCCc
Q 044597 153 LGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSN--TIL-AEYQFPPSLTHLSFSNIELIDDPMP 229 (341)
Q Consensus 153 l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~--~lp-~~~~lp~~L~~L~l~~~~l~~~~~~ 229 (341)
+ ....+|.+++.++.|+.|++.++ .+. .+| .+..+ ..|+.|.+++|.+ ...++
T Consensus 89 --------------n---rl~~lprgfgs~p~levldltyn-----nl~e~~lpgnff~m-~tlralyl~dndf-e~lp~ 144 (264)
T KOG0617|consen 89 --------------N---RLNILPRGFGSFPALEVLDLTYN-----NLNENSLPGNFFYM-TTLRALYLGDNDF-EILPP 144 (264)
T ss_pred --------------h---hhhcCccccCCCchhhhhhcccc-----ccccccCCcchhHH-HHHHHHHhcCCCc-ccCCh
Confidence 1 33455667777888888888776 332 366 55566 7777788887775 33444
Q ss_pred cCcCCCCCCeEEEEEeCcEeeecCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCccccccCC
Q 044597 230 ALEKLPVLQVLKLKYLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWC 303 (341)
Q Consensus 230 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~ 303 (341)
.++++++|+.|.+ ++ +.+-++|.++|.++.|++|+|.+++ +..+|+.+++
T Consensus 145 dvg~lt~lqil~l----------------------rd-ndll~lpkeig~lt~lrelhiqgnr-l~vlppel~~ 194 (264)
T KOG0617|consen 145 DVGKLTNLQILSL----------------------RD-NDLLSLPKEIGDLTRLRELHIQGNR-LTVLPPELAN 194 (264)
T ss_pred hhhhhcceeEEee----------------------cc-CchhhCcHHHHHHHHHHHHhcccce-eeecChhhhh
Confidence 5666666666655 32 2344555556666667777777666 6666665554
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.36 E-value=7.1e-15 Score=115.15 Aligned_cols=154 Identities=18% Similarity=0.206 Sum_probs=125.8
Q ss_pred hhhccCCcccccccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCC
Q 044597 59 TVAFKGEFIISPIMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAH 137 (341)
Q Consensus 59 ~~~~~~~~~~~~~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~ 137 (341)
..+.+.-..++|.+..+.+|.+|++. +.++++|.+| +++++|+.|+++-|.+..+|.+|+.++.|+.||+.++.+.
T Consensus 39 tLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~-- 115 (264)
T KOG0617|consen 39 TLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLN-- 115 (264)
T ss_pred hcccCceeecCCcHHHhhhhhhhhcccchhhhcChhh-hhchhhhheecchhhhhcCccccCCCchhhhhhccccccc--
Confidence 34444455677899999999999998 5899999999 9999999999999999999999999999999999983222
Q ss_pred CceEEeCCCcchhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc-ccccccCCccEE
Q 044597 138 PGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL-AEYQFPPSLTHL 216 (341)
Q Consensus 138 i~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp-~~~~lp~~L~~L 216 (341)
...-|-. +-.|+-|+.|+++++ +.+.+|..++.+++|+.|.+..+ .+-++| .++.+ ..|+.|
T Consensus 116 -------e~~lpgn-ff~m~tlralyl~dn---dfe~lp~dvg~lt~lqil~lrdn-----dll~lpkeig~l-t~lrel 178 (264)
T KOG0617|consen 116 -------ENSLPGN-FFYMTTLRALYLGDN---DFEILPPDVGKLTNLQILSLRDN-----DLLSLPKEIGDL-TRLREL 178 (264)
T ss_pred -------cccCCcc-hhHHHHHHHHHhcCC---CcccCChhhhhhcceeEEeeccC-----chhhCcHHHHHH-HHHHHH
Confidence 1220223 556778888999988 78899999999999999999988 777889 88999 999999
Q ss_pred EEEeecCCCCCCccCcC
Q 044597 217 SFSNIELIDDPMPALEK 233 (341)
Q Consensus 217 ~l~~~~l~~~~~~~l~~ 233 (341)
++.+|.++ ..++.+++
T Consensus 179 hiqgnrl~-vlppel~~ 194 (264)
T KOG0617|consen 179 HIQGNRLT-VLPPELAN 194 (264)
T ss_pred hcccceee-ecChhhhh
Confidence 99999973 33334444
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.35 E-value=4.6e-13 Score=131.68 Aligned_cols=56 Identities=16% Similarity=0.179 Sum_probs=30.5
Q ss_pred CcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCcccccc----CCCCCCcEEEEecCC
Q 044597 257 PKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQL----WCLKSLNKLELWWPE 316 (341)
Q Consensus 257 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l----~~l~~L~~L~l~~~~ 316 (341)
++|++|+++++ .+..+|... .++|+.|++++|. +..+|..+ ..++++..|++.++|
T Consensus 367 ~~L~~LdLs~N-~Lt~LP~~l--~~sL~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 367 PTITTLDVSRN-ALTNLPENL--PAALQIMQASRNN-LVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred CCcCEEECCCC-cCCCCCHhH--HHHHHHHhhccCC-cccCchhHHHHhhcCCCccEEEeeCCC
Confidence 45666666653 344444332 1346666666655 55555433 234666777777776
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.32 E-value=1.2e-14 Score=139.50 Aligned_cols=214 Identities=19% Similarity=0.200 Sum_probs=155.2
Q ss_pred ccccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCC---CCCC------
Q 044597 69 SPIMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITL---PAHP------ 138 (341)
Q Consensus 69 ~~~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~l---p~~i------ 138 (341)
...+..+.+|..+..+ +.+.++|..+ ....+|++|++..|.++.+|.....++.|++|+|..+.+ |+..
T Consensus 257 p~wi~~~~nle~l~~n~N~l~~lp~ri-~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~ 335 (1081)
T KOG0618|consen 257 PEWIGACANLEALNANHNRLVALPLRI-SRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNA 335 (1081)
T ss_pred hHHHHhcccceEecccchhHHhhHHHH-hhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhH
Confidence 3567788899999998 6889999999 999999999999999999999999999999999998433 3321
Q ss_pred --ceEEeCCCc--chhh-hhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccC
Q 044597 139 --GKYSLHPCC--STEE-ILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPP 211 (341)
Q Consensus 139 --~~~~~~~~~--~~~~-~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~ 211 (341)
..+..+... ..+. +=..++.|+.|++.+|. ..+.....+.+.++|+.|++++| ++..+| .+.++ +
T Consensus 336 ~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~--Ltd~c~p~l~~~~hLKVLhLsyN-----rL~~fpas~~~kl-e 407 (1081)
T KOG0618|consen 336 SLNTLNVSSNKLSTLPSYEENNHAALQELYLANNH--LTDSCFPVLVNFKHLKVLHLSYN-----RLNSFPASKLRKL-E 407 (1081)
T ss_pred HHHHHhhhhccccccccccchhhHHHHHHHHhcCc--ccccchhhhccccceeeeeeccc-----ccccCCHHHHhch-H
Confidence 111111110 0011 01134457778888776 44455567888999999999998 899999 67888 8
Q ss_pred CccEEEEEeecCCCCCCccCcCCCCCCeEEE-EEeCcEeeecCCCCCcccEEEEecCCCCCceeecCCCC-CcccEEEEe
Q 044597 212 SLTHLSFSNIELIDDPMPALEKLPVLQVLKL-KYLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAM-PKLECVIIN 289 (341)
Q Consensus 212 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l-~~L~~L~l~ 289 (341)
.|+.|++++|+++..+ ..+..++.|++|.. ++....++ ....++.|+.++++. +++.........- |+|++|+++
T Consensus 408 ~LeeL~LSGNkL~~Lp-~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLdlS 484 (1081)
T KOG0618|consen 408 ELEELNLSGNKLTTLP-DTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLDLS 484 (1081)
T ss_pred HhHHHhcccchhhhhh-HHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEeccc-chhhhhhhhhhCCCcccceeecc
Confidence 9999999999974433 56778888888887 33333333 566788889998885 6677665433322 789999999
Q ss_pred cCCCC
Q 044597 290 PCAHL 294 (341)
Q Consensus 290 ~c~~l 294 (341)
+|..+
T Consensus 485 GN~~l 489 (1081)
T KOG0618|consen 485 GNTRL 489 (1081)
T ss_pred CCccc
Confidence 88853
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.29 E-value=1.5e-12 Score=128.02 Aligned_cols=198 Identities=20% Similarity=0.222 Sum_probs=131.7
Q ss_pred ceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhC
Q 044597 76 VRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILG 154 (341)
Q Consensus 76 ~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~ 154 (341)
.+++.|++. ++++.+|..+ . .+|++|++++|.+..+|..+. .+|+.|+++++.+. .+ +.. +.
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l-~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~----------~L-P~~-l~ 261 (754)
T PRK15370 199 EQITTLILDNNELKSLPENL-Q--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRIT----------EL-PER-LP 261 (754)
T ss_pred cCCcEEEecCCCCCcCChhh-c--cCCCEEECCCCccccCChhhh--ccccEEECcCCccC----------cC-Chh-Hh
Confidence 367788887 5888899877 3 478999999998888887654 47888888884433 22 223 32
Q ss_pred CCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc-ccccccCCccEEEEEeecCCCCCCccCcC
Q 044597 155 RLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL-AEYQFPPSLTHLSFSNIELIDDPMPALEK 233 (341)
Q Consensus 155 ~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~ 233 (341)
++|+.|++++| ....+|..+. ++|+.|++++| .++.+| .+ |++|+.|++++|.++..+. . .
T Consensus 262 --s~L~~L~Ls~N---~L~~LP~~l~--~sL~~L~Ls~N-----~Lt~LP~~l---p~sL~~L~Ls~N~Lt~LP~-~--l 323 (754)
T PRK15370 262 --SALQSLDLFHN---KISCLPENLP--EELRYLSVYDN-----SIRTLPAHL---PSGITHLNVQSNSLTALPE-T--L 323 (754)
T ss_pred --CCCCEEECcCC---ccCccccccC--CCCcEEECCCC-----ccccCcccc---hhhHHHHHhcCCccccCCc-c--c
Confidence 46888888876 3445665443 57888888887 777777 32 3678888888888643221 1 2
Q ss_pred CCCCCeEEEEEeC-cEeeecCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCccccccCCCCCCcEEEE
Q 044597 234 LPVLQVLKLKYLG-RKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLEL 312 (341)
Q Consensus 234 l~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l 312 (341)
.++|+.|+++++. ..++ ..-.++|+.|+++++ .+..+|... .++|+.|++++|. +..+|..+. ++|+.|++
T Consensus 324 ~~sL~~L~Ls~N~Lt~LP--~~l~~sL~~L~Ls~N-~L~~LP~~l--p~~L~~LdLs~N~-Lt~LP~~l~--~sL~~LdL 395 (754)
T PRK15370 324 PPGLKTLEAGENALTSLP--ASLPPELQVLDVSKN-QITVLPETL--PPTITTLDVSRNA-LTNLPENLP--AALQIMQA 395 (754)
T ss_pred cccceeccccCCccccCC--hhhcCcccEEECCCC-CCCcCChhh--cCCcCEEECCCCc-CCCCCHhHH--HHHHHHhh
Confidence 3578888773332 1111 122368888888874 466665432 3678888888886 777776553 36777777
Q ss_pred ecCC
Q 044597 313 WWPE 316 (341)
Q Consensus 313 ~~~~ 316 (341)
++|.
T Consensus 396 s~N~ 399 (754)
T PRK15370 396 SRNN 399 (754)
T ss_pred ccCC
Confidence 7765
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.20 E-value=1.2e-10 Score=114.49 Aligned_cols=47 Identities=19% Similarity=0.262 Sum_probs=28.7
Q ss_pred eeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecC
Q 044597 79 RENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGA 131 (341)
Q Consensus 79 r~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~ 131 (341)
..|+++ +.++++|..+ . ++|+.|++++|.+..+|. .+++|++|++++
T Consensus 204 ~~LdLs~~~LtsLP~~l-~--~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~ 251 (788)
T PRK15387 204 AVLNVGESGLTTLPDCL-P--AHITTLVIPDNNLTSLPA---LPPELRTLEVSG 251 (788)
T ss_pred cEEEcCCCCCCcCCcch-h--cCCCEEEccCCcCCCCCC---CCCCCcEEEecC
Confidence 345555 3666677666 3 356667777776666664 245666666666
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.16 E-value=6.8e-12 Score=113.12 Aligned_cols=224 Identities=23% Similarity=0.181 Sum_probs=135.8
Q ss_pred CCcceeeeeccC-CCC-----cccChhhhhcCCCccEEecCCccccc-------cchhhcccccCceeeecCcCCCCCCc
Q 044597 73 DQEVRLRENSII-PSL-----KSLPSSFLSSLLNLYTLEMPFSYIDH-------TADEFWKMSKLRYLNFGAITLPAHPG 139 (341)
Q Consensus 73 ~~l~~Lr~L~l~-~~~-----~~lp~~if~~L~~L~~L~Ls~~~~~~-------lp~~i~~L~~L~~L~l~~~~lp~~i~ 139 (341)
..+.+++.+++. +.+ ..++..+ ...+.+++|+++++.+.. ++..+..+++|+.|++++..+..
T Consensus 20 ~~l~~L~~l~l~~~~l~~~~~~~i~~~l-~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--- 95 (319)
T cd00116 20 PKLLCLQVLRLEGNTLGEEAAKALASAL-RPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP--- 95 (319)
T ss_pred HHHhhccEEeecCCCCcHHHHHHHHHHH-hhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCCh---
Confidence 334457777776 244 3455556 777778888888775542 34456677788888887732210
Q ss_pred eEEeCCCcchhhhhCCC---CCCceEEEEeecch--hhhHHHHHhcCC-CCCCEEEEEeCCCCCCCCc-----cCc-ccc
Q 044597 140 KYSLHPCCSTEEILGRL---PNLQNLRIWGDLSY--YQSLLSKSLCRL-SCLESLKLANESKMPRRSN-----TIL-AEY 207 (341)
Q Consensus 140 ~~~~~~~~~~~~~l~~l---~~L~~L~l~~~~~~--~~~~l~~~l~~l-~~L~~L~l~~~~e~~~~l~-----~lp-~~~ 207 (341)
.. +.. +..+ ++|+.|+++++... ....+...+..+ ++|+.|++++| .++ .++ .+.
T Consensus 96 ------~~-~~~-~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n-----~l~~~~~~~~~~~~~ 162 (319)
T cd00116 96 ------DG-CGV-LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRN-----RLEGASCEALAKALR 162 (319)
T ss_pred ------hH-HHH-HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCC-----cCCchHHHHHHHHHH
Confidence 11 222 3333 44888888877522 223444556677 88888888887 444 223 344
Q ss_pred cccCCccEEEEEeecCCCCCCc----cCcCCCCCCeEEEEEeCc------EeeecCCCCCcccEEEEecCCCCCceee-c
Q 044597 208 QFPPSLTHLSFSNIELIDDPMP----ALEKLPVLQVLKLKYLGR------KLACSSDGFPKLKVLHLKSMLWLEEWTM-G 276 (341)
Q Consensus 208 ~lp~~L~~L~l~~~~l~~~~~~----~l~~l~~L~~L~l~~~~~------~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~ 276 (341)
.+ .+|++|++++|.++..... .+..+++|++|+++.+.. .+......+++|++|++++++ +..... .
T Consensus 163 ~~-~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~ 240 (319)
T cd00116 163 AN-RDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAA 240 (319)
T ss_pred hC-CCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHH
Confidence 55 6788888888887543322 234556888888832221 111223457889999998853 443210 0
Q ss_pred C-C----CCCcccEEEEecCCCCC-----ccccccCCCCCCcEEEEecCC
Q 044597 277 I-K----AMPKLECVIINPCAHLK-----RIPEQLWCLKSLNKLELWWPE 316 (341)
Q Consensus 277 ~-~----~l~~L~~L~l~~c~~l~-----~lp~~l~~l~~L~~L~l~~~~ 316 (341)
. . ..+.|+.|++.+|. ++ .+...+..+++|+++++++|.
T Consensus 241 l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 241 LASALLSPNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred HHHHHhccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 0 0 24789999999987 43 234455667889999999887
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.14 E-value=6.1e-12 Score=110.73 Aligned_cols=215 Identities=20% Similarity=0.244 Sum_probs=128.6
Q ss_pred ccCCcceeeeeccCCCCcccChhhhhcCCCccEEecCCcccccc-chhhcccccCceeeecC----cCCCCCC-------
Q 044597 71 IMDQEVRLRENSIIPSLKSLPSSFLSSLLNLYTLEMPFSYIDHT-ADEFWKMSKLRYLNFGA----ITLPAHP------- 138 (341)
Q Consensus 71 ~~~~l~~Lr~L~l~~~~~~lp~~if~~L~~L~~L~Ls~~~~~~l-p~~i~~L~~L~~L~l~~----~~lp~~i------- 138 (341)
.++.-+-..+|+- +.|+.+|+..|+.+++||.||||+|.|+.+ |..|..|.+|-.|-+.+ ..+|++.
T Consensus 64 ~LP~~tveirLdq-N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~sl 142 (498)
T KOG4237|consen 64 NLPPETVEIRLDQ-NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSL 142 (498)
T ss_pred cCCCcceEEEecc-CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHH
Confidence 3333333444444 789999999999999999999999988887 77888898888776665 4555544
Q ss_pred ceEEeC----CCcchhhhhCCCCCCceEEEEeecchhhhHHHH-HhcCCCCCCEEEEEeCCC-----CCC----------
Q 044597 139 GKYSLH----PCCSTEEILGRLPNLQNLRIWGDLSYYQSLLSK-SLCRLSCLESLKLANESK-----MPR---------- 198 (341)
Q Consensus 139 ~~~~~~----~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~-~l~~l~~L~~L~l~~~~e-----~~~---------- 198 (341)
..+... ..+ ..+++..+++|..|.+.++ ....++. .+..+..++.+.+..+.- ++.
T Consensus 143 qrLllNan~i~Ci-r~~al~dL~~l~lLslyDn---~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~i 218 (498)
T KOG4237|consen 143 QRLLLNANHINCI-RQDALRDLPSLSLLSLYDN---KIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPI 218 (498)
T ss_pred HHHhcChhhhcch-hHHHHHHhhhcchhcccch---hhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchh
Confidence 000000 133 3334777777777777766 4555554 466666677666654320 100
Q ss_pred ------------------------------------------CCccCc--ccccccCCccEEEEEeecCCCCCCccCcCC
Q 044597 199 ------------------------------------------RSNTIL--AEYQFPPSLTHLSFSNIELIDDPMPALEKL 234 (341)
Q Consensus 199 ------------------------------------------~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l 234 (341)
.....| -+..+ ++|++|++++|.++.....+|..+
T Consensus 219 etsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L-~~L~~lnlsnN~i~~i~~~aFe~~ 297 (498)
T KOG4237|consen 219 ETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKL-PNLRKLNLSNNKITRIEDGAFEGA 297 (498)
T ss_pred hcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhc-ccceEeccCCCccchhhhhhhcch
Confidence 111223 33456 777777777777766666677777
Q ss_pred CCCCeEEEEEeCcEe--eecCCCCCcccEEEEecCCCCCceee-cCCCCCcccEEEEecCC
Q 044597 235 PVLQVLKLKYLGRKL--ACSSDGFPKLKVLHLKSMLWLEEWTM-GIKAMPKLECVIINPCA 292 (341)
Q Consensus 235 ~~L~~L~l~~~~~~~--~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~c~ 292 (341)
..+++|.+..+..+. .....++..|+.|++.+ ++++.+.. ....+.+|.+|.+-.+|
T Consensus 298 a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~-N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 298 AELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYD-NQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred hhhhhhhcCcchHHHHHHHhhhccccceeeeecC-CeeEEEecccccccceeeeeehccCc
Confidence 777777772222111 11234566777777776 44444432 22234556666665554
No 22
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.13 E-value=2e-11 Score=122.07 Aligned_cols=92 Identities=22% Similarity=0.279 Sum_probs=64.7
Q ss_pred CcccChhhhhcCCCccEEecCCc-cccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEEE
Q 044597 87 LKSLPSSFLSSLLNLYTLEMPFS-YIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIW 165 (341)
Q Consensus 87 ~~~lp~~if~~L~~L~~L~Ls~~-~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l~ 165 (341)
+..++..+|..++.|++|||++| .+.++|.+|+.|-+||+|++++..++ .. |.. ++++++|.+|++.
T Consensus 559 l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~----------~L-P~~-l~~Lk~L~~Lnl~ 626 (889)
T KOG4658|consen 559 LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS----------HL-PSG-LGNLKKLIYLNLE 626 (889)
T ss_pred hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc----------cc-chH-HHHHHhhheeccc
Confidence 56667777799999999999998 88999999999999999999994443 22 333 6666666666666
Q ss_pred eecchhhhHHHHHhcCCCCCCEEEEEe
Q 044597 166 GDLSYYQSLLSKSLCRLSCLESLKLAN 192 (341)
Q Consensus 166 ~~~~~~~~~l~~~l~~l~~L~~L~l~~ 192 (341)
... .....+.....+++|++|.+-.
T Consensus 627 ~~~--~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 627 VTG--RLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred ccc--ccccccchhhhcccccEEEeec
Confidence 554 2223333444466666666644
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.99 E-value=5.7e-11 Score=107.08 Aligned_cols=226 Identities=19% Similarity=0.099 Sum_probs=145.9
Q ss_pred CcceeeeeccC-CCCc-------ccChhhhhcCCCccEEecCCcccc-ccchhhccccc---CceeeecCcCCCCCCceE
Q 044597 74 QEVRLRENSII-PSLK-------SLPSSFLSSLLNLYTLEMPFSYID-HTADEFWKMSK---LRYLNFGAITLPAHPGKY 141 (341)
Q Consensus 74 ~l~~Lr~L~l~-~~~~-------~lp~~if~~L~~L~~L~Ls~~~~~-~lp~~i~~L~~---L~~L~l~~~~lp~~i~~~ 141 (341)
..+.++.+++. ..+. .++..+ .++++|++|++++|.+. ..+..+..+.+ |++|++++..+..
T Consensus 49 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~----- 122 (319)
T cd00116 49 PQPSLKELCLSLNETGRIPRGLQSLLQGL-TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGD----- 122 (319)
T ss_pred hCCCceEEeccccccCCcchHHHHHHHHH-HhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccch-----
Confidence 34456666664 2222 344555 88999999999999665 45566666666 9999998833321
Q ss_pred EeCC-CcchhhhhCCC-CCCceEEEEeecch--hhhHHHHHhcCCCCCCEEEEEeCCCCCCCCcc-----Cc-ccccccC
Q 044597 142 SLHP-CCSTEEILGRL-PNLQNLRIWGDLSY--YQSLLSKSLCRLSCLESLKLANESKMPRRSNT-----IL-AEYQFPP 211 (341)
Q Consensus 142 ~~~~-~~~~~~~l~~l-~~L~~L~l~~~~~~--~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~-----lp-~~~~lp~ 211 (341)
.+ .. +..++..+ ++|++|++++|... ....++..+..+++|+.|++++| .++. ++ .+... +
T Consensus 123 --~~~~~-l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n-----~l~~~~~~~l~~~l~~~-~ 193 (319)
T cd00116 123 --RGLRL-LAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN-----GIGDAGIRALAEGLKAN-C 193 (319)
T ss_pred --HHHHH-HHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC-----CCchHHHHHHHHHHHhC-C
Confidence 00 11 22226677 89999999998632 33456667888899999999987 5542 23 34455 6
Q ss_pred CccEEEEEeecCCCCCC----ccCcCCCCCCeEEEEEeCcEe---ee----cCCCCCcccEEEEecCCCCC-----ceee
Q 044597 212 SLTHLSFSNIELIDDPM----PALEKLPVLQVLKLKYLGRKL---AC----SSDGFPKLKVLHLKSMLWLE-----EWTM 275 (341)
Q Consensus 212 ~L~~L~l~~~~l~~~~~----~~l~~l~~L~~L~l~~~~~~~---~~----~~~~~~~L~~L~l~~~~~l~-----~~~~ 275 (341)
+|+.|++++|.+..... ..+..+++|++|+++.+.... .. .....+.|++|++.++. ++ .+..
T Consensus 194 ~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~ 272 (319)
T cd00116 194 NLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND-ITDDGAKDLAE 272 (319)
T ss_pred CCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC-CCcHHHHHHHH
Confidence 99999999998754332 235678899999993322110 00 01134799999999864 33 1222
Q ss_pred cCCCCCcccEEEEecCCCCCc-----cccccCCC-CCCcEEEEecCC
Q 044597 276 GIKAMPKLECVIINPCAHLKR-----IPEQLWCL-KSLNKLELWWPE 316 (341)
Q Consensus 276 ~~~~l~~L~~L~l~~c~~l~~-----lp~~l~~l-~~L~~L~l~~~~ 316 (341)
....+++|+.+++++|. +.. +...+... +.|+++++.++|
T Consensus 273 ~~~~~~~L~~l~l~~N~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 273 VLAEKESLLELDLRGNK-FGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHhcCCCccEEECCCCC-CcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 33456899999999998 443 22233334 678888888776
No 24
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=2.9e-10 Score=101.51 Aligned_cols=228 Identities=21% Similarity=0.152 Sum_probs=150.1
Q ss_pred CCcceeeeeccCC-CCcccCh--hhhhcCCCccEEecCCc---cccccchhhcccccCceeeecCcCCCCCCceEEeCCC
Q 044597 73 DQEVRLRENSIIP-SLKSLPS--SFLSSLLNLYTLEMPFS---YIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPC 146 (341)
Q Consensus 73 ~~l~~Lr~L~l~~-~~~~lp~--~if~~L~~L~~L~Ls~~---~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~ 146 (341)
.++..||...+.+ .+...+. .. ..+++++.||||.| ++..+-.-...|++|+.|+++.+++-. ...
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~-k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~-------~~~ 189 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYS-KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSN-------FIS 189 (505)
T ss_pred hhHHhhhheeecCccccccchhhhh-hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccC-------Ccc
Confidence 4577888888874 5555552 56 89999999999999 444444456789999999999844421 001
Q ss_pred cchhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc-ccccccCCccEEEEEeecCCC
Q 044597 147 CSTEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL-AEYQFPPSLTHLSFSNIELID 225 (341)
Q Consensus 147 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp-~~~~lp~~L~~L~l~~~~l~~ 225 (341)
. .. -..++.|++|.++.|+.+ ...+...+..+++|+.|++.+|. .+.... ...-+ ..|+.|+|++|++..
T Consensus 190 s-~~--~~~l~~lK~L~l~~CGls-~k~V~~~~~~fPsl~~L~L~~N~----~~~~~~~~~~i~-~~L~~LdLs~N~li~ 260 (505)
T KOG3207|consen 190 S-NT--TLLLSHLKQLVLNSCGLS-WKDVQWILLTFPSLEVLYLEANE----IILIKATSTKIL-QTLQELDLSNNNLID 260 (505)
T ss_pred c-cc--hhhhhhhheEEeccCCCC-HHHHHHHHHhCCcHHHhhhhccc----ccceecchhhhh-hHHhhccccCCcccc
Confidence 1 11 236788999999999754 44555567789999999999873 222111 22234 889999999999533
Q ss_pred -CCCccCcCCCCCCeEEEEEeCcE-ee-------ecCCCCCcccEEEEecCCCCCceee--cCCCCCcccEEEEecCCCC
Q 044597 226 -DPMPALEKLPVLQVLKLKYLGRK-LA-------CSSDGFPKLKVLHLKSMLWLEEWTM--GIKAMPKLECVIINPCAHL 294 (341)
Q Consensus 226 -~~~~~l~~l~~L~~L~l~~~~~~-~~-------~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~l~~L~~L~l~~c~~l 294 (341)
......+.+|.|..|.++..+.. +. .....||+|++|++.. +++.+|+. ....+++|+.|.+..++.-
T Consensus 261 ~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~-N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 261 FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISE-NNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeeccc-Cccccccccchhhccchhhhhhccccccc
Confidence 44567889999999999333321 11 1234799999999997 55666662 3445778888887766621
Q ss_pred Ccc----ccccCCCCCCcEEEEecCChH
Q 044597 295 KRI----PEQLWCLKSLNKLELWWPEPK 318 (341)
Q Consensus 295 ~~l----p~~l~~l~~L~~L~l~~~~~~ 318 (341)
+.- -..|..+++|..|.=.+|.+.
T Consensus 340 ~e~~~a~~~VIAr~~~l~~LN~~di~p~ 367 (505)
T KOG3207|consen 340 KETDTAKLLVIARISQLVKLNDVDISPN 367 (505)
T ss_pred ccccceeEEeeeehhhhhhhcccccChH
Confidence 110 112455566666655555533
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.84 E-value=7.8e-11 Score=108.31 Aligned_cols=120 Identities=18% Similarity=0.268 Sum_probs=80.0
Q ss_pred eccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCC
Q 044597 81 NSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNL 159 (341)
Q Consensus 81 L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L 159 (341)
.+++ +.+.++|..+ +.+..|+.+.|+.|.+..+|..+++|..|.+||++.+.+. .. +.. +..++ |
T Consensus 80 aDlsrNR~~elp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS----------~l-p~~-lC~lp-L 145 (722)
T KOG0532|consen 80 ADLSRNRFSELPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLS----------HL-PDG-LCDLP-L 145 (722)
T ss_pred hhccccccccCchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhh----------cC-Chh-hhcCc-c
Confidence 4444 5677777777 7777788888888877788888888888888877763221 11 222 44443 6
Q ss_pred ceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc-ccccccCCccEEEEEeecC
Q 044597 160 QNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL-AEYQFPPSLTHLSFSNIEL 223 (341)
Q Consensus 160 ~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp-~~~~lp~~L~~L~l~~~~l 223 (341)
+.|-++++ ....+|..++.+..|..|+.+.| .+..+| .++.+ .+|+.|.+..|++
T Consensus 146 kvli~sNN---kl~~lp~~ig~~~tl~~ld~s~n-----ei~slpsql~~l-~slr~l~vrRn~l 201 (722)
T KOG0532|consen 146 KVLIVSNN---KLTSLPEEIGLLPTLAHLDVSKN-----EIQSLPSQLGYL-TSLRDLNVRRNHL 201 (722)
T ss_pred eeEEEecC---ccccCCcccccchhHHHhhhhhh-----hhhhchHHhhhH-HHHHHHHHhhhhh
Confidence 66666666 56666667776677777777766 666666 66666 6777777777764
No 26
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.82 E-value=4.6e-10 Score=99.07 Aligned_cols=166 Identities=17% Similarity=0.190 Sum_probs=112.8
Q ss_pred cccccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCC-ccccccchh-hcccccCceeeecC-------------
Q 044597 68 ISPIMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPF-SYIDHTADE-FWKMSKLRYLNFGA------------- 131 (341)
Q Consensus 68 ~~~~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~-~~~~~lp~~-i~~L~~L~~L~l~~------------- 131 (341)
+...|+.+.+||.|+++ ++|..|-+.-|..++.|-.|-+.+ |+|..+|.. |++|..|+.|.+.-
T Consensus 83 P~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~d 162 (498)
T KOG4237|consen 83 PPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRD 162 (498)
T ss_pred ChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHH
Confidence 34578889999999997 577777666667777777766665 577777764 56666665555543
Q ss_pred --------------cCCCCCC-----------------------------------------------------------
Q 044597 132 --------------ITLPAHP----------------------------------------------------------- 138 (341)
Q Consensus 132 --------------~~lp~~i----------------------------------------------------------- 138 (341)
..++.+-
T Consensus 163 L~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~ 242 (498)
T KOG4237|consen 163 LPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDAR 242 (498)
T ss_pred hhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchh
Confidence 1222211
Q ss_pred --------------ceEEeCCCcchhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc
Q 044597 139 --------------GKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL 204 (341)
Q Consensus 139 --------------~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp 204 (341)
..-..+... |..+|+++++|++|++++|.. ...-..++.+..+++.|.+..| .++.+.
T Consensus 243 kf~c~~esl~s~~~~~d~~d~~c-P~~cf~~L~~L~~lnlsnN~i--~~i~~~aFe~~a~l~eL~L~~N-----~l~~v~ 314 (498)
T KOG4237|consen 243 KFLCSLESLPSRLSSEDFPDSIC-PAKCFKKLPNLRKLNLSNNKI--TRIEDGAFEGAAELQELYLTRN-----KLEFVS 314 (498)
T ss_pred hhhhhHHhHHHhhccccCcCCcC-hHHHHhhcccceEeccCCCcc--chhhhhhhcchhhhhhhhcCcc-----hHHHHH
Confidence 000011123 444578888888888888852 2223356788888888888877 777776
Q ss_pred --ccccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEE
Q 044597 205 --AEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKL 242 (341)
Q Consensus 205 --~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l 242 (341)
.+..+ ..|+.|++++|+++.....+|..+..|.+|.+
T Consensus 315 ~~~f~~l-s~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l 353 (498)
T KOG4237|consen 315 SGMFQGL-SGLKTLSLYDNQITTVAPGAFQTLFSLSTLNL 353 (498)
T ss_pred HHhhhcc-ccceeeeecCCeeEEEecccccccceeeeeeh
Confidence 55678 88888999999887777777888888888888
No 27
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.79 E-value=5.2e-10 Score=95.58 Aligned_cols=214 Identities=19% Similarity=0.154 Sum_probs=138.3
Q ss_pred cccCCcceeeeeccC--------CCC--cccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecC-------c
Q 044597 70 PIMDQEVRLRENSII--------PSL--KSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGA-------I 132 (341)
Q Consensus 70 ~~~~~l~~Lr~L~l~--------~~~--~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~-------~ 132 (341)
..+.-+.+|.+|..+ ++| ..+|-.+ .-+++|..+.+|.|.-+.+-.-...-+-|+++...+ .
T Consensus 176 hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l-~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~ 254 (490)
T KOG1259|consen 176 HVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNL-NAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPS 254 (490)
T ss_pred HHHHhhhheeEEEecCCCCCCccccccccccccch-HHhhhhheeeeeccchhheeceeecCchhheeeeeccccccccc
Confidence 344456677777763 222 2355555 667788888888885444433233456788887776 2
Q ss_pred CCCCCCceEE--------eCCCcchhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc
Q 044597 133 TLPAHPGKYS--------LHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL 204 (341)
Q Consensus 133 ~lp~~i~~~~--------~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp 204 (341)
-+|... .+. ..+.. ... +.....|.+|++++| .+..+..++.-.+.++.|+++.| .+..+.
T Consensus 255 l~pe~~-~~D~~~~E~~t~~G~~-~~~-~dTWq~LtelDLS~N---~I~~iDESvKL~Pkir~L~lS~N-----~i~~v~ 323 (490)
T KOG1259|consen 255 LLPETI-LADPSGSEPSTSNGSA-LVS-ADTWQELTELDLSGN---LITQIDESVKLAPKLRRLILSQN-----RIRTVQ 323 (490)
T ss_pred ccchhh-hcCccCCCCCccCCce-EEe-cchHhhhhhcccccc---chhhhhhhhhhccceeEEecccc-----ceeeeh
Confidence 222211 000 00112 222 444567888888888 56667777888899999999887 666665
Q ss_pred ccccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeCcEeeecCCCCCcccEEEEecCCCCCcee--ecCCCCCc
Q 044597 205 AEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLGRKLACSSDGFPKLKVLHLKSMLWLEEWT--MGIKAMPK 282 (341)
Q Consensus 205 ~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~l~~ 282 (341)
.+..+ ++|+.|++++|.++ ....+-.++.+.+.|.++.+..+.....+.+-+|..|++++ ++++.+. ..+|++|.
T Consensus 324 nLa~L-~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPC 400 (490)
T KOG1259|consen 324 NLAEL-PQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSS-NQIEELDEVNHIGNLPC 400 (490)
T ss_pred hhhhc-ccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheeccccc-cchhhHHHhcccccccH
Confidence 55667 88999999998863 33333446778888888444433334455677888888887 5566554 45789999
Q ss_pred ccEEEEecCCCCCcccc
Q 044597 283 LECVIINPCAHLKRIPE 299 (341)
Q Consensus 283 L~~L~l~~c~~l~~lp~ 299 (341)
|+.+.+.+|| +..+|+
T Consensus 401 LE~l~L~~NP-l~~~vd 416 (490)
T KOG1259|consen 401 LETLRLTGNP-LAGSVD 416 (490)
T ss_pred HHHHhhcCCC-ccccch
Confidence 9999999999 666654
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=1.4e-09 Score=97.24 Aligned_cols=36 Identities=14% Similarity=0.135 Sum_probs=20.8
Q ss_pred hcCCCccEEecCCccccccch--hhcccccCceeeecC
Q 044597 96 SSLLNLYTLEMPFSYIDHTAD--EFWKMSKLRYLNFGA 131 (341)
Q Consensus 96 ~~L~~L~~L~Ls~~~~~~lp~--~i~~L~~L~~L~l~~ 131 (341)
+++++|+...|.++.+...+. -...+++++.|||+.
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~ 155 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSR 155 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchh
Confidence 566666666666665555442 344555555555554
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.77 E-value=1.4e-09 Score=88.21 Aligned_cols=124 Identities=24% Similarity=0.300 Sum_probs=39.2
Q ss_pred hcCCCccEEecCCccccccchhhc-ccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEEEeecchhhhH
Q 044597 96 SSLLNLYTLEMPFSYIDHTADEFW-KMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSL 174 (341)
Q Consensus 96 ~~L~~L~~L~Ls~~~~~~lp~~i~-~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 174 (341)
.+..+++.|+|++|.|..+. .++ .+.+|+.|+++++.+-. ++. +..+++|++|++++|. +..
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~------------l~~-l~~L~~L~~L~L~~N~---I~~ 78 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITK------------LEG-LPGLPRLKTLDLSNNR---ISS 78 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--------------TT-----TT--EEE--SS------S
T ss_pred cccccccccccccccccccc-chhhhhcCCCEEECCCCCCcc------------ccC-ccChhhhhhcccCCCC---CCc
Confidence 34556677777777666653 344 46667777776643321 444 6666777777777764 333
Q ss_pred HHHHh-cCCCCCCEEEEEeCCCCCCCCccCc---ccccccCCccEEEEEeecCCCCCC---ccCcCCCCCCeEEE
Q 044597 175 LSKSL-CRLSCLESLKLANESKMPRRSNTIL---AEYQFPPSLTHLSFSNIELIDDPM---PALEKLPVLQVLKL 242 (341)
Q Consensus 175 l~~~l-~~l~~L~~L~l~~~~e~~~~l~~lp---~~~~lp~~L~~L~l~~~~l~~~~~---~~l~~l~~L~~L~l 242 (341)
+...+ ..+++|+.|++++| .+..+. .+..+ ++|+.|++.+|++....- ..+..+|+|+.|+-
T Consensus 79 i~~~l~~~lp~L~~L~L~~N-----~I~~l~~l~~L~~l-~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 79 ISEGLDKNLPNLQELYLSNN-----KISDLNELEPLSSL-PKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -CHHHHHH-TT--EEE-TTS--------SCCCCGGGGG--TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred cccchHHhCCcCCEEECcCC-----cCCChHHhHHHHcC-CCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 32222 24677777777766 555544 45567 788888888887643221 12455677777754
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.72 E-value=1.5e-09 Score=100.09 Aligned_cols=167 Identities=18% Similarity=0.228 Sum_probs=128.9
Q ss_pred cchhhHHh--hhccCCc-ccccccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCcee
Q 044597 52 SCSPALLT--VAFKGEF-IISPIMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYL 127 (341)
Q Consensus 52 ~~~~~~~~--~~~~~~~-~~~~~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L 127 (341)
.|....+. +.|.+.+ .+...+.++..|.|++++ +.+..+|..+ +.|+ |+.|.+++|++..+|.+++.+..|..|
T Consensus 94 ~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~l-C~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~l 171 (722)
T KOG0532|consen 94 ACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGL-CDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHL 171 (722)
T ss_pred HHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhh-hcCc-ceeEEEecCccccCCcccccchhHHHh
Confidence 45544333 4555544 445677888899999998 6889999999 8887 899999999999999999988999999
Q ss_pred eecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc-cc
Q 044597 128 NFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL-AE 206 (341)
Q Consensus 128 ~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp-~~ 206 (341)
|.+.+.+- .. +++ ++.+.+|+.|.+..+ ....+|..+. .-.|..||++.| .+..+| .+
T Consensus 172 d~s~nei~----------sl-psq-l~~l~slr~l~vrRn---~l~~lp~El~-~LpLi~lDfScN-----kis~iPv~f 230 (722)
T KOG0532|consen 172 DVSKNEIQ----------SL-PSQ-LGYLTSLRDLNVRRN---HLEDLPEELC-SLPLIRLDFSCN-----KISYLPVDF 230 (722)
T ss_pred hhhhhhhh----------hc-hHH-hhhHHHHHHHHHhhh---hhhhCCHHHh-CCceeeeecccC-----ceeecchhh
Confidence 98874432 44 667 888999999988877 6777888887 446788999888 899999 88
Q ss_pred ccccCCccEEEEEeecCCCCCCcc--CcCCCCCCeEEE
Q 044597 207 YQFPPSLTHLSFSNIELIDDPMPA--LEKLPVLQVLKL 242 (341)
Q Consensus 207 ~~lp~~L~~L~l~~~~l~~~~~~~--l~~l~~L~~L~l 242 (341)
..| .+|++|.|.+|.+...+.+. -|...--++|+.
T Consensus 231 r~m-~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~ 267 (722)
T KOG0532|consen 231 RKM-RHLQVLQLENNPLQSPPAQICEKGKVHIFKYLST 267 (722)
T ss_pred hhh-hhheeeeeccCCCCCChHHHHhccceeeeeeecc
Confidence 899 99999999999985444332 344555666666
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.70 E-value=1.5e-08 Score=94.23 Aligned_cols=183 Identities=22% Similarity=0.240 Sum_probs=123.1
Q ss_pred CCcccChhhhhcCCCccEEecCCccccccchhhcccc-cCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEE
Q 044597 86 SLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMS-KLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRI 164 (341)
Q Consensus 86 ~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~-~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l 164 (341)
.+..-+..+ ..++.+..|++.++.+..+|.....+. +|+.|+++++.+.. . +.. ++.+++|+.|++
T Consensus 104 ~~~~~~~~~-~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~----------l-~~~-~~~l~~L~~L~l 170 (394)
T COG4886 104 RLRSNISEL-LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES----------L-PSP-LRNLPNLKNLDL 170 (394)
T ss_pred ccccCchhh-hcccceeEEecCCcccccCccccccchhhcccccccccchhh----------h-hhh-hhcccccccccc
Confidence 333445556 667788888888888888888788785 88888888744431 1 234 778888888888
Q ss_pred EeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc-ccccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEEE
Q 044597 165 WGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL-AEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLK 243 (341)
Q Consensus 165 ~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~ 243 (341)
+++ ....++...+.+++|+.|+++++ .+..+| .+... .+|+++.+++|.. ...+..+..+.++..+.+.
T Consensus 171 ~~N---~l~~l~~~~~~~~~L~~L~ls~N-----~i~~l~~~~~~~-~~L~~l~~~~N~~-~~~~~~~~~~~~l~~l~l~ 240 (394)
T COG4886 171 SFN---DLSDLPKLLSNLSNLNNLDLSGN-----KISDLPPEIELL-SALEELDLSNNSI-IELLSSLSNLKNLSGLELS 240 (394)
T ss_pred CCc---hhhhhhhhhhhhhhhhheeccCC-----ccccCchhhhhh-hhhhhhhhcCCcc-eecchhhhhcccccccccC
Confidence 887 56777776667888888888887 777787 44444 6688888888852 3444556667777766652
Q ss_pred Ee-CcEeeecCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCC
Q 044597 244 YL-GRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAH 293 (341)
Q Consensus 244 ~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~ 293 (341)
.+ ........+.++++++|++.+ +.+.+++. .+.+.+++.|+++++..
T Consensus 241 ~n~~~~~~~~~~~l~~l~~L~~s~-n~i~~i~~-~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 241 NNKLEDLPESIGNLSNLETLDLSN-NQISSISS-LGSLTNLRELDLSGNSL 289 (394)
T ss_pred Cceeeeccchhccccccceecccc-cccccccc-ccccCccCEEeccCccc
Confidence 22 121133445666677777776 44555554 55677777777777653
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.65 E-value=4.8e-09 Score=85.12 Aligned_cols=128 Identities=23% Similarity=0.286 Sum_probs=45.9
Q ss_pred ccCCcceeeeeccCC-CCcccChhhhh-cCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcc
Q 044597 71 IMDQEVRLRENSIIP-SLKSLPSSFLS-SLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCS 148 (341)
Q Consensus 71 ~~~~l~~Lr~L~l~~-~~~~lp~~if~-~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~ 148 (341)
.+.+..++|.|++.+ .|..+. .+ + .+.+|+.|++++|.+..++ ++..+++|++|+++++.+-.
T Consensus 14 ~~~n~~~~~~L~L~~n~I~~Ie-~L-~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~------------ 78 (175)
T PF14580_consen 14 QYNNPVKLRELNLRGNQISTIE-NL-GATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISS------------ 78 (175)
T ss_dssp -----------------------S---TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S------------
T ss_pred cccccccccccccccccccccc-ch-hhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCc------------
Confidence 344556778888874 666664 45 5 5788888888888888875 57788888888888854431
Q ss_pred hhhhh-CCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc-----ccccccCCccEEEEEe
Q 044597 149 TEEIL-GRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL-----AEYQFPPSLTHLSFSN 220 (341)
Q Consensus 149 ~~~~l-~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp-----~~~~lp~~L~~L~l~~ 220 (341)
+.+++ ..+++|++|++++|.......+ ..++.+++|+.|++.+| .+..-+ -+..+ |+|+.|+-..
T Consensus 79 i~~~l~~~lp~L~~L~L~~N~I~~l~~l-~~L~~l~~L~~L~L~~N-----Pv~~~~~YR~~vi~~l-P~Lk~LD~~~ 149 (175)
T PF14580_consen 79 ISEGLDKNLPNLQELYLSNNKISDLNEL-EPLSSLPKLRVLSLEGN-----PVCEKKNYRLFVIYKL-PSLKVLDGQD 149 (175)
T ss_dssp -CHHHHHH-TT--EEE-TTS---SCCCC-GGGGG-TT--EEE-TT------GGGGSTTHHHHHHHH--TT-SEETTEE
T ss_pred cccchHHhCCcCCEEECcCCcCCChHHh-HHHHcCCCcceeeccCC-----cccchhhHHHHHHHHc-ChhheeCCEE
Confidence 32213 3578888888888864444443 45677888888888876 444444 13457 7787776544
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.65 E-value=2.6e-09 Score=91.38 Aligned_cols=124 Identities=24% Similarity=0.334 Sum_probs=66.7
Q ss_pred cCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEEEeecchhhhHHH
Q 044597 97 SLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLLS 176 (341)
Q Consensus 97 ~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~ 176 (341)
..+.|+.+|||+|.|..+..++.-+++++.|+++.+.+- . +.. +..+++|+.|++++| ....+.
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~-----------~-v~n-La~L~~L~~LDLS~N---~Ls~~~ 345 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIR-----------T-VQN-LAELPQLQLLDLSGN---LLAECV 345 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEecccccee-----------e-ehh-hhhcccceEeecccc---hhHhhh
Confidence 445677777777777777777777777777777763331 1 333 555556666666655 233333
Q ss_pred HHhcCCCCCCEEEEEeCCCCCCCCccCcccccccCCccEEEEEeecCCC-CCCccCcCCCCCCeEEE
Q 044597 177 KSLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSNIELID-DPMPALEKLPVLQVLKL 242 (341)
Q Consensus 177 ~~l~~l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l 242 (341)
.+-..+-+.+.|.++.| .++.+..++.+ -+|..|++.+|++.. +.+..+|++|+|+.+.+
T Consensus 346 Gwh~KLGNIKtL~La~N-----~iE~LSGL~KL-YSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L 406 (490)
T KOG1259|consen 346 GWHLKLGNIKTLKLAQN-----KIETLSGLRKL-YSLVNLDLSSNQIEELDEVNHIGNLPCLETLRL 406 (490)
T ss_pred hhHhhhcCEeeeehhhh-----hHhhhhhhHhh-hhheeccccccchhhHHHhcccccccHHHHHhh
Confidence 33334445555555554 44444444445 555555555555321 23334555555555544
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.59 E-value=3.5e-08 Score=91.83 Aligned_cols=189 Identities=22% Similarity=0.285 Sum_probs=143.5
Q ss_pred EEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCC-CCceEEEEeecchhhhHHHHHhcC
Q 044597 103 TLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLP-NLQNLRIWGDLSYYQSLLSKSLCR 181 (341)
Q Consensus 103 ~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~l~~~l~~ 181 (341)
.++++.+.+..-+..+..++.++.|++.++.+- .. ++. .+.++ +|+.|+++++ ....+|..++.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~----------~i-~~~-~~~~~~nL~~L~l~~N---~i~~l~~~~~~ 161 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNIT----------DI-PPL-IGLLKSNLKELDLSDN---KIESLPSPLRN 161 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccc----------cC-ccc-cccchhhccccccccc---chhhhhhhhhc
Confidence 588888877666667778889999999883332 22 233 55564 9999999998 57777788999
Q ss_pred CCCCCEEEEEeCCCCCCCCccCc-ccccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEEEEe-CcEeeecCCCCCcc
Q 044597 182 LSCLESLKLANESKMPRRSNTIL-AEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYL-GRKLACSSDGFPKL 259 (341)
Q Consensus 182 l~~L~~L~l~~~~e~~~~l~~lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~L 259 (341)
+++|+.|+++.| .+..+| ..+.. ++|+.|++++|.+...+ ...+....|+++.++.+ ..........+.++
T Consensus 162 l~~L~~L~l~~N-----~l~~l~~~~~~~-~~L~~L~ls~N~i~~l~-~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l 234 (394)
T COG4886 162 LPNLKNLDLSFN-----DLSDLPKLLSNL-SNLNNLDLSGNKISDLP-PEIELLSALEELDLSNNSIIELLSSLSNLKNL 234 (394)
T ss_pred cccccccccCCc-----hhhhhhhhhhhh-hhhhheeccCCccccCc-hhhhhhhhhhhhhhcCCcceecchhhhhcccc
Confidence 999999999999 889998 44477 89999999999973322 23355666999999555 44455556677777
Q ss_pred cEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCccccccCCCCCCcEEEEecCC
Q 044597 260 KVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLELWWPE 316 (341)
Q Consensus 260 ~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 316 (341)
..+.+.+ ..+...+...+.++++++|.+.+|. +..++. ++.+.+++.|+++++.
T Consensus 235 ~~l~l~~-n~~~~~~~~~~~l~~l~~L~~s~n~-i~~i~~-~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 235 SGLELSN-NKLEDLPESIGNLSNLETLDLSNNQ-ISSISS-LGSLTNLRELDLSGNS 288 (394)
T ss_pred cccccCC-ceeeeccchhccccccceecccccc-cccccc-ccccCccCEEeccCcc
Confidence 7777554 3444445666788999999999998 787876 8889999999999865
No 35
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=2.5e-09 Score=91.34 Aligned_cols=181 Identities=21% Similarity=0.214 Sum_probs=104.0
Q ss_pred CccEEecCCccccc--cchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEEEeecchhhhHHHH
Q 044597 100 NLYTLEMPFSYIDH--TADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLLSK 177 (341)
Q Consensus 100 ~L~~L~Ls~~~~~~--lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~ 177 (341)
.|++||||...|+. +-.-+..+.+|+.|.+.+.+ ++..+ ... +++-.+|+.|+++.+..-...++.-
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~---------LdD~I-~~~-iAkN~~L~~lnlsm~sG~t~n~~~l 254 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLR---------LDDPI-VNT-IAKNSNLVRLNLSMCSGFTENALQL 254 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccc---------cCcHH-HHH-HhccccceeeccccccccchhHHHH
Confidence 37777887775542 33335667777777776633 33344 555 7777778888887776323333444
Q ss_pred HhcCCCCCCEEEEEeCCCCCCCCcc-Cc-ccccccCCccEEEEEeec--CCCCCCccCcCCCCCCeEEEEEeCcEeeecC
Q 044597 178 SLCRLSCLESLKLANESKMPRRSNT-IL-AEYQFPPSLTHLSFSNIE--LIDDPMPALEKLPVLQVLKLKYLGRKLACSS 253 (341)
Q Consensus 178 ~l~~l~~L~~L~l~~~~e~~~~l~~-lp-~~~~lp~~L~~L~l~~~~--l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 253 (341)
.+.+++.|..|+++||. ..+. +. .+....++|+.|++++|. +....+.. -.
T Consensus 255 l~~scs~L~~LNlsWc~----l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~t---------------------L~ 309 (419)
T KOG2120|consen 255 LLSSCSRLDELNLSWCF----LFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLST---------------------LV 309 (419)
T ss_pred HHHhhhhHhhcCchHhh----ccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHH---------------------HH
Confidence 56777788888888873 2221 22 223333677777777776 21111111 12
Q ss_pred CCCCcccEEEEecCCCCCcee-ecCCCCCcccEEEEecCCCCCcccc---ccCCCCCCcEEEEecCChH
Q 044597 254 DGFPKLKVLHLKSMLWLEEWT-MGIKAMPKLECVIINPCAHLKRIPE---QLWCLKSLNKLELWWPEPK 318 (341)
Q Consensus 254 ~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~c~~l~~lp~---~l~~l~~L~~L~l~~~~~~ 318 (341)
..+|.|..|+++++..++.-. .....|+.|++|.++.|..+ .|. .+...|+|.+|++.+|-++
T Consensus 310 ~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccccCc
Confidence 246666666666655554422 22345777777777777643 232 2455777777777776544
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.48 E-value=1.2e-07 Score=63.19 Aligned_cols=56 Identities=25% Similarity=0.413 Sum_probs=47.0
Q ss_pred ceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccch-hhcccccCceeeecC
Q 044597 76 VRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTAD-EFWKMSKLRYLNFGA 131 (341)
Q Consensus 76 ~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~-~i~~L~~L~~L~l~~ 131 (341)
++|++|++. +.+..+|...|..+++|++|++++|.+..+|. .|..+++|++|++++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~ 58 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSN 58 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcC
Confidence 357888887 57889998887999999999999998888865 678899999998876
No 37
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=5.8e-09 Score=89.10 Aligned_cols=137 Identities=18% Similarity=0.122 Sum_probs=88.5
Q ss_pred hCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc---ccccccCCccEEEEEeecCCCCCCc
Q 044597 153 LGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL---AEYQFPPSLTHLSFSNIELIDDPMP 229 (341)
Q Consensus 153 l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp---~~~~lp~~L~~L~l~~~~l~~~~~~ 229 (341)
+..+.+|+.|.+.+++ ..+.+...+..-.+|+.|+++.|. .++... -+.++ +.|..|++++|.+..+.+.
T Consensus 206 Ls~C~kLk~lSlEg~~--LdD~I~~~iAkN~~L~~lnlsm~s----G~t~n~~~ll~~sc-s~L~~LNlsWc~l~~~~Vt 278 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLR--LDDPIVNTIAKNSNLVRLNLSMCS----GFTENALQLLLSSC-SRLDELNLSWCFLFTEKVT 278 (419)
T ss_pred HHHHHhhhhccccccc--cCcHHHHHHhccccceeecccccc----ccchhHHHHHHHhh-hhHhhcCchHhhccchhhh
Confidence 5667777777777776 445555667777777777777765 555543 34566 7777777777775332221
Q ss_pred cCcCCCCCCeEEEEEeCcEeeecCCCCCcccEEEEecCCCCC---ceeecCCCCCcccEEEEecCCCCCc-cccccCCCC
Q 044597 230 ALEKLPVLQVLKLKYLGRKLACSSDGFPKLKVLHLKSMLWLE---EWTMGIKAMPKLECVIINPCAHLKR-IPEQLWCLK 305 (341)
Q Consensus 230 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~---~~~~~~~~l~~L~~L~l~~c~~l~~-lp~~l~~l~ 305 (341)
.+ ...--++|+.|+++++...- .+..-...+|+|..|++++|-.++. ....+..++
T Consensus 279 v~--------------------V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~ 338 (419)
T KOG2120|consen 279 VA--------------------VAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFN 338 (419)
T ss_pred HH--------------------HhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcc
Confidence 10 01123567777777754221 2222234689999999999997775 233456799
Q ss_pred CCcEEEEecCC
Q 044597 306 SLNKLELWWPE 316 (341)
Q Consensus 306 ~L~~L~l~~~~ 316 (341)
.|++|.++.|-
T Consensus 339 ~L~~lSlsRCY 349 (419)
T KOG2120|consen 339 YLQHLSLSRCY 349 (419)
T ss_pred hheeeehhhhc
Confidence 99999999987
No 38
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.26 E-value=1.2e-07 Score=84.76 Aligned_cols=141 Identities=21% Similarity=0.260 Sum_probs=98.9
Q ss_pred cCCCCCCEEEEEeCCCCCCCCccCc-c-cc-cccCCccEEEEEeec-CCCCCCccCcC-CCCCCeEEEEEeC----cEee
Q 044597 180 CRLSCLESLKLANESKMPRRSNTIL-A-EY-QFPPSLTHLSFSNIE-LIDDPMPALEK-LPVLQVLKLKYLG----RKLA 250 (341)
Q Consensus 180 ~~l~~L~~L~l~~~~e~~~~l~~lp-~-~~-~lp~~L~~L~l~~~~-l~~~~~~~l~~-l~~L~~L~l~~~~----~~~~ 250 (341)
..+..|+.|+.+++. .++..+ | ++ .- .+|+.+.+..|+ ++...+..++. .+.|+.+++...+ ..+.
T Consensus 291 ~~c~~lq~l~~s~~t----~~~d~~l~aLg~~~-~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~ 365 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCT----DITDEVLWALGQHC-HNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLA 365 (483)
T ss_pred hhhhHhhhhcccCCC----CCchHHHHHHhcCC-CceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHh
Confidence 445667777777665 555555 2 33 45 799999999998 55555556554 7899999882111 1233
Q ss_pred ecCCCCCcccEEEEecCCCCCce-----eecCCCCCcccEEEEecCCCCCc-cccccCCCCCCcEEEEecCChHHHHHhh
Q 044597 251 CSSDGFPKLKVLHLKSMLWLEEW-----TMGIKAMPKLECVIINPCAHLKR-IPEQLWCLKSLNKLELWWPEPKLRQQLW 324 (341)
Q Consensus 251 ~~~~~~~~L~~L~l~~~~~l~~~-----~~~~~~l~~L~~L~l~~c~~l~~-lp~~l~~l~~L~~L~l~~~~~~~~~~~~ 324 (341)
.....++.|+.|.++.|..+++- .....++..|+.+.+++||.+.. .-..+..+++|+.+++.+|..-.++.++
T Consensus 366 sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~ 445 (483)
T KOG4341|consen 366 SLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAIS 445 (483)
T ss_pred hhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhH
Confidence 34557999999999988766554 22234678899999999997665 2334677899999999999977777776
Q ss_pred h
Q 044597 325 E 325 (341)
Q Consensus 325 ~ 325 (341)
+
T Consensus 446 ~ 446 (483)
T KOG4341|consen 446 R 446 (483)
T ss_pred H
Confidence 6
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.22 E-value=1.9e-07 Score=87.37 Aligned_cols=130 Identities=20% Similarity=0.238 Sum_probs=89.1
Q ss_pred cccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcc
Q 044597 70 PIMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCS 148 (341)
Q Consensus 70 ~~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~ 148 (341)
..+..++.+.+|++. +.+..+...+ ..+++|++|++++|.|..+. ++..+..|+.|++.++.+-.
T Consensus 89 ~~l~~~~~l~~l~l~~n~i~~i~~~l-~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~------------ 154 (414)
T KOG0531|consen 89 NHLSKLKSLEALDLYDNKIEKIENLL-SSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISD------------ 154 (414)
T ss_pred cccccccceeeeeccccchhhcccch-hhhhcchheecccccccccc-chhhccchhhheeccCcchh------------
Confidence 446778888999998 5777776657 88999999999999888884 57788889999888844432
Q ss_pred hhhhhCCCCCCceEEEEeecchhhhHHHHH-hcCCCCCCEEEEEeCCCCCCCCccCcccccccCCccEEEEEeecC
Q 044597 149 TEEILGRLPNLQNLRIWGDLSYYQSLLSKS-LCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSNIEL 223 (341)
Q Consensus 149 ~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~-l~~l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l~~~~l 223 (341)
+.. +..+++|+.++++++. ...+... +..+.+++.+.++++ .+..+.++..+ ..+..+++..|.+
T Consensus 155 ~~~-~~~l~~L~~l~l~~n~---i~~ie~~~~~~~~~l~~l~l~~n-----~i~~i~~~~~~-~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 155 ISG-LESLKSLKLLDLSYNR---IVDIENDELSELISLEELDLGGN-----SIREIEGLDLL-KKLVLLSLLDNKI 220 (414)
T ss_pred ccC-CccchhhhcccCCcch---hhhhhhhhhhhccchHHHhccCC-----chhcccchHHH-HHHHHhhcccccc
Confidence 445 6667888888888885 3333222 577888888888876 33333333333 3444445555543
No 40
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.17 E-value=3.7e-07 Score=79.83 Aligned_cols=228 Identities=19% Similarity=0.191 Sum_probs=122.3
Q ss_pred cCCcceeeeeccCC-CC-----cccChhhhhcCCCccEEecCCcc----ccccchh-------hcccccCceeeecCcCC
Q 044597 72 MDQEVRLRENSIIP-SL-----KSLPSSFLSSLLNLYTLEMPFSY----IDHTADE-------FWKMSKLRYLNFGAITL 134 (341)
Q Consensus 72 ~~~l~~Lr~L~l~~-~~-----~~lp~~if~~L~~L~~L~Ls~~~----~~~lp~~-------i~~L~~L~~L~l~~~~l 134 (341)
...+..+..+++++ .+ +.+...+ .+.+.|+.-++|.-. ..++|.. +-..++|++|||+++.+
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L-~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVL-ASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHH-hhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 33445556666653 22 1233445 666677777776542 2334433 22345677777776332
Q ss_pred CCCCceEEeCCCc--chhhhhCCCCCCceEEEEeecchh--hhH---------HHHHhcCCCCCCEEEEEeCCCCCCCCc
Q 044597 135 PAHPGKYSLHPCC--STEEILGRLPNLQNLRIWGDLSYY--QSL---------LSKSLCRLSCLESLKLANESKMPRRSN 201 (341)
Q Consensus 135 p~~i~~~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~--~~~---------l~~~l~~l~~L~~L~l~~~~e~~~~l~ 201 (341)
-+ .. .+.+.+.++..|+.|++.+|.... ... ...-+..-++|+.+....| ++.
T Consensus 105 G~---------~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-----rle 170 (382)
T KOG1909|consen 105 GP---------KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-----RLE 170 (382)
T ss_pred Cc---------cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-----ccc
Confidence 21 11 012225567777777777776211 111 1122445567777777766 555
Q ss_pred cCc------ccccccCCccEEEEEeecCCCCCC----ccCcCCCCCCeEEEEEeC------cEeeecCCCCCcccEEEEe
Q 044597 202 TIL------AEYQFPPSLTHLSFSNIELIDDPM----PALEKLPVLQVLKLKYLG------RKLACSSDGFPKLKVLHLK 265 (341)
Q Consensus 202 ~lp------~~~~lp~~L~~L~l~~~~l~~~~~----~~l~~l~~L~~L~l~~~~------~~~~~~~~~~~~L~~L~l~ 265 (341)
..+ .+... +.|+.+.+..|.+..... ..+..+|+|+.|++..+. ..+......+|+|+.|++.
T Consensus 171 n~ga~~~A~~~~~~-~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 171 NGGATALAEAFQSH-PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred cccHHHHHHHHHhc-cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 554 12345 677777777777544333 235667788888772211 1112223356777788877
Q ss_pred cCCCCCceee-----cCCCCCcccEEEEecCCCCCc-----cccccCCCCCCcEEEEecCC
Q 044597 266 SMLWLEEWTM-----GIKAMPKLECVIINPCAHLKR-----IPEQLWCLKSLNKLELWWPE 316 (341)
Q Consensus 266 ~~~~l~~~~~-----~~~~l~~L~~L~l~~c~~l~~-----lp~~l~~l~~L~~L~l~~~~ 316 (341)
+|.--..=.. -....|+|+.|.+.+|. ++. +-..+...|.|..|.+.+|.
T Consensus 250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 250 DCLLENEGAIAFVDALKESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred ccccccccHHHHHHHHhccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 7641111000 01237788888888877 332 22234557788888888876
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.15 E-value=4.6e-06 Score=81.88 Aligned_cols=105 Identities=17% Similarity=0.209 Sum_probs=64.8
Q ss_pred ccEEecCCcccc-ccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEEEeecchhhhHHHHHh
Q 044597 101 LYTLEMPFSYID-HTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLLSKSL 179 (341)
Q Consensus 101 L~~L~Ls~~~~~-~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l 179 (341)
++.|+|++|.+. .+|..+++|++|+.|+|+++.+. +.. +.. ++.+++|+.|++++|. ....+|..+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~---------g~i-P~~-~~~l~~L~~LdLs~N~--lsg~iP~~l 486 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIR---------GNI-PPS-LGSITSLEVLDLSYNS--FNGSIPESL 486 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCccc---------CcC-ChH-HhCCCCCCEEECCCCC--CCCCCchHH
Confidence 566677766443 56666777777777777663332 133 444 6777777777777664 334566677
Q ss_pred cCCCCCCEEEEEeCCCCCCCCccCc-ccccccCCccEEEEEeec
Q 044597 180 CRLSCLESLKLANESKMPRRSNTIL-AEYQFPPSLTHLSFSNIE 222 (341)
Q Consensus 180 ~~l~~L~~L~l~~~~e~~~~l~~lp-~~~~lp~~L~~L~l~~~~ 222 (341)
+.+++|+.|++++|. ....+| .+..++.++..+++.+|.
T Consensus 487 ~~L~~L~~L~Ls~N~----l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 487 GQLTSLRILNLNGNS----LSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred hcCCCCCEEECcCCc----ccccCChHHhhccccCceEEecCCc
Confidence 777777777777763 333566 554432456677777766
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.12 E-value=1.4e-07 Score=88.27 Aligned_cols=126 Identities=21% Similarity=0.247 Sum_probs=94.3
Q ss_pred CcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhh
Q 044597 74 QEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEI 152 (341)
Q Consensus 74 ~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~ 152 (341)
.+..+..++++ +.+.++-..+ +.+++|+.|++..|.+..+...+..+.+|++|+++++.+-. +..
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l-~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~------------i~~- 135 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHL-SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITK------------LEG- 135 (414)
T ss_pred HhHhHHhhccchhhhhhhhccc-ccccceeeeeccccchhhcccchhhhhcchheecccccccc------------ccc-
Confidence 44555666665 4566644557 88999999999999999987668999999999999855532 444
Q ss_pred hCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCcc--cccccCCccEEEEEeecC
Q 044597 153 LGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTILA--EYQFPPSLTHLSFSNIEL 223 (341)
Q Consensus 153 l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp~--~~~lp~~L~~L~l~~~~l 223 (341)
+..++.|+.|++.+|. +..+ ..+..++.|+.++++++ .+..+.. ...+ .+++.+.+.+|.+
T Consensus 136 l~~l~~L~~L~l~~N~---i~~~-~~~~~l~~L~~l~l~~n-----~i~~ie~~~~~~~-~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 136 LSTLTLLKELNLSGNL---ISDI-SGLESLKSLKLLDLSYN-----RIVDIENDELSEL-ISLEELDLGGNSI 198 (414)
T ss_pred hhhccchhhheeccCc---chhc-cCCccchhhhcccCCcc-----hhhhhhhhhhhhc-cchHHHhccCCch
Confidence 7778889999999885 3333 34556888999999887 6666653 4677 8888889988875
No 43
>PLN03150 hypothetical protein; Provisional
Probab=98.11 E-value=5.2e-06 Score=81.54 Aligned_cols=100 Identities=21% Similarity=0.225 Sum_probs=75.7
Q ss_pred CceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCc-c
Q 044597 124 LRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSN-T 202 (341)
Q Consensus 124 L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~-~ 202 (341)
++.|+|+++.+. +.. +.+ ++++++|+.|++++|. ....+|..++.+++|+.|++++| .+. .
T Consensus 420 v~~L~L~~n~L~---------g~i-p~~-i~~L~~L~~L~Ls~N~--l~g~iP~~~~~l~~L~~LdLs~N-----~lsg~ 481 (623)
T PLN03150 420 IDGLGLDNQGLR---------GFI-PND-ISKLRHLQSINLSGNS--IRGNIPPSLGSITSLEVLDLSYN-----SFNGS 481 (623)
T ss_pred EEEEECCCCCcc---------ccC-CHH-HhCCCCCCEEECCCCc--ccCcCChHHhCCCCCCEEECCCC-----CCCCC
Confidence 667777773332 244 666 8999999999999885 44578888999999999999998 554 6
Q ss_pred Cc-ccccccCCccEEEEEeecCCCCCCccCcCC-CCCCeEEE
Q 044597 203 IL-AEYQFPPSLTHLSFSNIELIDDPMPALEKL-PVLQVLKL 242 (341)
Q Consensus 203 lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l-~~L~~L~l 242 (341)
+| .++.+ ++|+.|++++|.+++..+..++.+ .++..+++
T Consensus 482 iP~~l~~L-~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~ 522 (623)
T PLN03150 482 IPESLGQL-TSLRILNLNGNSLSGRVPAALGGRLLHRASFNF 522 (623)
T ss_pred CchHHhcC-CCCCEEECcCCcccccCChHHhhccccCceEEe
Confidence 78 88899 899999999999876666666553 45666666
No 44
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.09 E-value=4.1e-07 Score=77.98 Aligned_cols=59 Identities=17% Similarity=0.287 Sum_probs=36.2
Q ss_pred CCCCcccEEEEecCCCCCcee--ecCCCCCcccEEEEecCCCCCccccc------cCCCCCCcEEEEe
Q 044597 254 DGFPKLKVLHLKSMLWLEEWT--MGIKAMPKLECVIINPCAHLKRIPEQ------LWCLKSLNKLELW 313 (341)
Q Consensus 254 ~~~~~L~~L~l~~~~~l~~~~--~~~~~l~~L~~L~l~~c~~l~~lp~~------l~~l~~L~~L~l~ 313 (341)
..||.+..|++.. .++.+|. .....||+|..|.+.++|-...+..+ ++++++++.|.=+
T Consensus 221 e~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 221 EPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred CCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 4566666666665 4455554 23446888888888888855544322 4567777766533
No 45
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.89 E-value=7.9e-06 Score=54.28 Aligned_cols=53 Identities=38% Similarity=0.491 Sum_probs=30.7
Q ss_pred CCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEE
Q 044597 184 CLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKL 242 (341)
Q Consensus 184 ~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l 242 (341)
+|+.|++++| .+..+| ++..+ ++|++|++++|.+...+..++..+++|++|++
T Consensus 2 ~L~~L~l~~n-----~l~~i~~~~f~~l-~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l 56 (61)
T PF13855_consen 2 NLESLDLSNN-----KLTEIPPDSFSNL-PNLETLDLSNNNLTSIPPDAFSNLPNLRYLDL 56 (61)
T ss_dssp TESEEEETSS-----TESEECTTTTTTG-TTESEEEETSSSESEEETTTTTTSTTESEEEE
T ss_pred cCcEEECCCC-----CCCccCHHHHcCC-CCCCEeEccCCccCccCHHHHcCCCCCCEEeC
Confidence 4556666655 555555 55556 66666666666654444445555666665555
No 46
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.88 E-value=2.2e-06 Score=75.10 Aligned_cols=190 Identities=17% Similarity=0.160 Sum_probs=101.4
Q ss_pred hcCCCccEEecCCcccc-----ccchhhcccccCceeeecCcCCCCCC-c-----eEEeCCCcchhhhhCCCCCCceEEE
Q 044597 96 SSLLNLYTLEMPFSYID-----HTADEFWKMSKLRYLNFGAITLPAHP-G-----KYSLHPCCSTEEILGRLPNLQNLRI 164 (341)
Q Consensus 96 ~~L~~L~~L~Ls~~~~~-----~lp~~i~~L~~L~~L~l~~~~lp~~i-~-----~~~~~~~~~~~~~l~~l~~L~~L~l 164 (341)
-..++|++||||.|.+. .+-.-+.+...|++|.|.+.-+-+.- . .+.+ .. -.. .+.-++||++..
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l--~~-~kk-~~~~~~Lrv~i~ 164 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFEL--AV-NKK-AASKPKLRVFIC 164 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHH--HH-Hhc-cCCCcceEEEEe
Confidence 45667888888888332 22223556777888888772111100 0 0000 00 111 344566777777
Q ss_pred Eeecc--hhhhHHHHHhcCCCCCCEEEEEeCCC-CCCCCccCc-ccccccCCccEEEEEeecCCCCCC----ccCcCCCC
Q 044597 165 WGDLS--YYQSLLSKSLCRLSCLESLKLANESK-MPRRSNTIL-AEYQFPPSLTHLSFSNIELIDDPM----PALEKLPV 236 (341)
Q Consensus 165 ~~~~~--~~~~~l~~~l~~l~~L~~L~l~~~~e-~~~~l~~lp-~~~~lp~~L~~L~l~~~~l~~~~~----~~l~~l~~ 236 (341)
.+|+. .....+...+...+.|+.+.+..+.= .+ .++-+. .+... ++|+.|++.+|.++...- ..++.+++
T Consensus 165 ~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~e-G~~al~eal~~~-~~LevLdl~DNtft~egs~~LakaL~s~~~ 242 (382)
T KOG1909|consen 165 GRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPE-GVTALAEALEHC-PHLEVLDLRDNTFTLEGSVALAKALSSWPH 242 (382)
T ss_pred eccccccccHHHHHHHHHhccccceEEEecccccCc-hhHHHHHHHHhC-CcceeeecccchhhhHHHHHHHHHhcccch
Confidence 76652 12334445566667777777766410 00 111111 33455 777778887777543321 23556677
Q ss_pred CCeEEEEEeCcEee-------ecCCCCCcccEEEEecCCCCCc-----eeecCCCCCcccEEEEecCC
Q 044597 237 LQVLKLKYLGRKLA-------CSSDGFPKLKVLHLKSMLWLEE-----WTMGIKAMPKLECVIINPCA 292 (341)
Q Consensus 237 L~~L~l~~~~~~~~-------~~~~~~~~L~~L~l~~~~~l~~-----~~~~~~~l~~L~~L~l~~c~ 292 (341)
|++|+++++..+-- .....+|+|+.|.+.++. ++. +.......|.|+.|.+++|.
T Consensus 243 L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 243 LRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred heeecccccccccccHHHHHHHHhccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 77777733321111 012347888888888743 221 11223458899999999998
No 47
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.86 E-value=1.2e-05 Score=49.27 Aligned_cols=32 Identities=25% Similarity=0.347 Sum_probs=15.4
Q ss_pred CccEEecCCccccccchhhcccccCceeeecC
Q 044597 100 NLYTLEMPFSYIDHTADEFWKMSKLRYLNFGA 131 (341)
Q Consensus 100 ~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~ 131 (341)
+|++|++++|.+..+|..+++|++|++|++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~ 33 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSN 33 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecC
Confidence 44555555555555554455555555555554
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.82 E-value=2.4e-05 Score=48.00 Aligned_cols=39 Identities=28% Similarity=0.365 Sum_probs=33.0
Q ss_pred ceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccc
Q 044597 76 VRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTA 115 (341)
Q Consensus 76 ~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp 115 (341)
++|++|+++ +.++.+|..+ ++|++|++|++++|.+..+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l-~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPEL-SNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHG-TTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchH-hCCCCCCEEEecCCCCCCCc
Confidence 368999998 6999999888 99999999999999888775
No 49
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.76 E-value=8.4e-05 Score=68.01 Aligned_cols=32 Identities=19% Similarity=0.165 Sum_probs=16.5
Q ss_pred CcccEEEEecCCCCCceeecCCCCCcccEEEEecC
Q 044597 257 PKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPC 291 (341)
Q Consensus 257 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c 291 (341)
++|++|.+.+|.... +|.. -..+|+.|.+.++
T Consensus 156 sSLk~L~Is~c~~i~-LP~~--LP~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNII-LPEK--LPESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCccc-Cccc--ccccCcEEEeccc
Confidence 456777776655331 2211 1245666666554
No 50
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.66 E-value=0.00012 Score=66.97 Aligned_cols=51 Identities=14% Similarity=0.047 Sum_probs=34.4
Q ss_pred cceeeeeccC-CCCcccChhhhhcCCCccEEecCCc-cccccchhhcccccCceeeecC
Q 044597 75 EVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFS-YIDHTADEFWKMSKLRYLNFGA 131 (341)
Q Consensus 75 l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~-~~~~lp~~i~~L~~L~~L~l~~ 131 (341)
+.+++.|+++ ++++++|. + -.+|+.|.+++| .+..+|..+. .+|++|++++
T Consensus 51 ~~~l~~L~Is~c~L~sLP~-L---P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~ 103 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV-L---PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCH 103 (426)
T ss_pred hcCCCEEEeCCCCCcccCC-C---CCCCcEEEccCCCCcccCCchhh--hhhhheEccC
Confidence 4566777776 36777772 3 245888888876 6677776552 5778887776
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.59 E-value=7.1e-05 Score=73.84 Aligned_cols=35 Identities=20% Similarity=0.314 Sum_probs=17.0
Q ss_pred hcCCCccEEecCCccccccchhhcccccCceeeecC
Q 044597 96 SSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGA 131 (341)
Q Consensus 96 ~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~ 131 (341)
.++++|+.||+|++++..+ .+++.|++|+.|.+++
T Consensus 170 ~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrn 204 (699)
T KOG3665|consen 170 ASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRN 204 (699)
T ss_pred hccCccceeecCCCCccCc-HHHhccccHHHHhccC
Confidence 4444455555555544444 3444555555554444
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.57 E-value=2.6e-06 Score=81.31 Aligned_cols=124 Identities=19% Similarity=0.180 Sum_probs=88.8
Q ss_pred eeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhh-hhCC
Q 044597 78 LRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEE-ILGR 155 (341)
Q Consensus 78 Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~-~l~~ 155 (341)
|..-+.+ +.+..+.+++ .-+++|+.|||++|++..+- .+..+++|++|||+++.+-. ++. +...
T Consensus 166 L~~a~fsyN~L~~mD~SL-qll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~------------vp~l~~~g 231 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESL-QLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRH------------VPQLSMVG 231 (1096)
T ss_pred HhhhhcchhhHHhHHHHH-HHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhcc------------ccccchhh
Confidence 3344444 5667777788 88999999999999888875 78889999999999832210 111 0122
Q ss_pred CCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc---ccccccCCccEEEEEeecCCCC
Q 044597 156 LPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL---AEYQFPPSLTHLSFSNIELIDD 226 (341)
Q Consensus 156 l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp---~~~~lp~~L~~L~l~~~~l~~~ 226 (341)
+. |+.|.+.+| ....+ .++.++++|+.|++++| -+.... .+..+ ..|+.|.|.+|++-..
T Consensus 232 c~-L~~L~lrnN---~l~tL-~gie~LksL~~LDlsyN-----ll~~hseL~pLwsL-s~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 232 CK-LQLLNLRNN---ALTTL-RGIENLKSLYGLDLSYN-----LLSEHSELEPLWSL-SSLIVLWLEGNPLCCA 294 (1096)
T ss_pred hh-heeeeeccc---HHHhh-hhHHhhhhhhccchhHh-----hhhcchhhhHHHHH-HHHHHHhhcCCccccC
Confidence 33 899999988 45555 57889999999999997 454443 34467 8899999999986443
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.50 E-value=5.7e-05 Score=65.14 Aligned_cols=156 Identities=18% Similarity=0.240 Sum_probs=86.3
Q ss_pred CCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCcccccccCCccEEEEEeecCCCCCCcc-CcC
Q 044597 155 RLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSNIELIDDPMPA-LEK 233 (341)
Q Consensus 155 ~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l~~~~l~~~~~~~-l~~ 233 (341)
..+.++.+++.+|..+...++...+.+++.|+.|+++.|. +...+..+| ..+ .+|+.|-+.+..+....... +..
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~-L~s~I~~lp--~p~-~nl~~lVLNgT~L~w~~~~s~l~~ 144 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNS-LSSDIKSLP--LPL-KNLRVLVLNGTGLSWTQSTSSLDD 144 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCc-CCCccccCc--ccc-cceEEEEEcCCCCChhhhhhhhhc
Confidence 3556677777777766777777777888888888887651 000222233 234 67888888877766555543 556
Q ss_pred CCCCCeEEEEEeC-----------cEeee--------------------cCCCCCcccEEEEecCCCCCceee--cCCCC
Q 044597 234 LPVLQVLKLKYLG-----------RKLAC--------------------SSDGFPKLKVLHLKSMLWLEEWTM--GIKAM 280 (341)
Q Consensus 234 l~~L~~L~l~~~~-----------~~~~~--------------------~~~~~~~L~~L~l~~~~~l~~~~~--~~~~l 280 (341)
+|.+++|+++.+. +.+.. ....||++..+.+..++ ++.... ....+
T Consensus 145 lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s~ek~se~~ 223 (418)
T KOG2982|consen 145 LPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTESSEKGSEPF 223 (418)
T ss_pred chhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccchhhcccCCCC
Confidence 7777777662211 00000 00125555555554433 222221 11235
Q ss_pred CcccEEEEecCCCCCccc--cccCCCCCCcEEEEecCC
Q 044597 281 PKLECVIINPCAHLKRIP--EQLWCLKSLNKLELWWPE 316 (341)
Q Consensus 281 ~~L~~L~l~~c~~l~~lp--~~l~~l~~L~~L~l~~~~ 316 (341)
|.+..|.+..+. +.+.. +.+..++.|..|.+.+.|
T Consensus 224 p~~~~LnL~~~~-idswasvD~Ln~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 224 PSLSCLNLGANN-IDSWASVDALNGFPQLVDLRVSENP 260 (418)
T ss_pred Ccchhhhhcccc-cccHHHHHHHcCCchhheeeccCCc
Confidence 555555555444 33322 245678888888888888
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.49 E-value=2.5e-05 Score=76.98 Aligned_cols=130 Identities=20% Similarity=0.212 Sum_probs=78.7
Q ss_pred cccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCC
Q 044597 121 MSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRS 200 (341)
Q Consensus 121 L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l 200 (341)
-.+|++|++++. .....++ +...-..+|+|+.|.+.+.... .+.+..-..++++|..||++++ .+
T Consensus 121 r~nL~~LdI~G~-------~~~s~~W--~~kig~~LPsL~sL~i~~~~~~-~~dF~~lc~sFpNL~sLDIS~T-----nI 185 (699)
T KOG3665|consen 121 RQNLQHLDISGS-------ELFSNGW--PKKIGTMLPSLRSLVISGRQFD-NDDFSQLCASFPNLRSLDISGT-----NI 185 (699)
T ss_pred HHhhhhcCcccc-------chhhccH--HHHHhhhCcccceEEecCceec-chhHHHHhhccCccceeecCCC-----Cc
Confidence 356788888771 1111112 3341234788888888876521 2234455667788888888876 55
Q ss_pred ccCcccccccCCccEEEEEeecCCC-CCCccCcCCCCCCeEEEEEeC---cE-----eeecCCCCCcccEEEEec
Q 044597 201 NTILAEYQFPPSLTHLSFSNIELID-DPMPALEKLPVLQVLKLKYLG---RK-----LACSSDGFPKLKVLHLKS 266 (341)
Q Consensus 201 ~~lp~~~~lp~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~~~---~~-----~~~~~~~~~~L~~L~l~~ 266 (341)
+.+..++.+ ++|+.|.+.+-.+.. ..+..+-.|++|+.|+++... .. .......+|.|+.|+.++
T Consensus 186 ~nl~GIS~L-knLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 186 SNLSGISRL-KNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred cCcHHHhcc-ccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 655556677 888888887766532 344566778888888882211 10 111233578888888886
No 55
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.40 E-value=3.9e-06 Score=80.13 Aligned_cols=161 Identities=22% Similarity=0.210 Sum_probs=102.0
Q ss_pred ChhhhhcCCCccEEecCCccccccchhhcccc-cCceeeecC-------------cCCCCCC-----ceEEeC--C-Ccc
Q 044597 91 PSSFLSSLLNLYTLEMPFSYIDHTADEFWKMS-KLRYLNFGA-------------ITLPAHP-----GKYSLH--P-CCS 148 (341)
Q Consensus 91 p~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~-~L~~L~l~~-------------~~lp~~i-----~~~~~~--~-~~~ 148 (341)
|-+| ..++.||+|.+++|.+..+ .++..+. .|++|...+ ..+..+. ...+++ . ..
T Consensus 102 pi~i-fpF~sLr~LElrg~~L~~~-~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~- 178 (1096)
T KOG1859|consen 102 PISI-FPFRSLRVLELRGCDLSTA-KGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVL- 178 (1096)
T ss_pred Ccee-ccccceeeEEecCcchhhh-hhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHh-
Confidence 6678 7889999999999976653 2333322 344444433 1111111 001111 1 12
Q ss_pred hhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCcc--cccccCCccEEEEEeecCCCC
Q 044597 149 TEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTILA--EYQFPPSLTHLSFSNIELIDD 226 (341)
Q Consensus 149 ~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp~--~~~lp~~L~~L~l~~~~l~~~ 226 (341)
+++++.-++.|+.|+++.|. .... +.+..+++|++|+|++| .+..+|. .... +|..|.+++|.+ .
T Consensus 179 mD~SLqll~ale~LnLshNk---~~~v-~~Lr~l~~LkhLDlsyN-----~L~~vp~l~~~gc--~L~~L~lrnN~l--~ 245 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNK---FTKV-DNLRRLPKLKHLDLSYN-----CLRHVPQLSMVGC--KLQLLNLRNNAL--T 245 (1096)
T ss_pred HHHHHHHHHHhhhhccchhh---hhhh-HHHHhcccccccccccc-----hhccccccchhhh--hheeeeecccHH--H
Confidence 33336667788999999885 3333 47889999999999999 8999993 3334 599999999986 5
Q ss_pred CCccCcCCCCCCeEEEEEeCcEeeec---CCCCCcccEEEEecC
Q 044597 227 PMPALEKLPVLQVLKLKYLGRKLACS---SDGFPKLKVLHLKSM 267 (341)
Q Consensus 227 ~~~~l~~l~~L~~L~l~~~~~~~~~~---~~~~~~L~~L~l~~~ 267 (341)
.+..+.+|.+|+.|+++|+-..-... ...+..|+.|.|.+.
T Consensus 246 tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 246 TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred hhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence 66678899999999995554222111 223556667777663
No 56
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.99 E-value=7.2e-05 Score=57.25 Aligned_cols=83 Identities=17% Similarity=0.182 Sum_probs=38.4
Q ss_pred hcCCCccEEecCCccccccchhhcc-cccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEEEeecchhhhH
Q 044597 96 SSLLNLYTLEMPFSYIDHTADEFWK-MSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSL 174 (341)
Q Consensus 96 ~~L~~L~~L~Ls~~~~~~lp~~i~~-L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 174 (341)
.+..+|...+|++|.++.+|+.+.. .+-...|++.++++. .+ |.+ +..++.|+.+++++| ....
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis----------dv-PeE-~Aam~aLr~lNl~~N---~l~~ 114 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS----------DV-PEE-LAAMPALRSLNLRFN---PLNA 114 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh----------hc-hHH-HhhhHHhhhcccccC---cccc
Confidence 3444444455555555555544432 234444444443222 23 444 555555555555554 3344
Q ss_pred HHHHhcCCCCCCEEEEEeC
Q 044597 175 LSKSLCRLSCLESLKLANE 193 (341)
Q Consensus 175 l~~~l~~l~~L~~L~l~~~ 193 (341)
.|..+..+.++-.|+..++
T Consensus 115 ~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 115 EPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred chHHHHHHHhHHHhcCCCC
Confidence 4444444555555554443
No 57
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.93 E-value=4.7e-05 Score=68.49 Aligned_cols=229 Identities=20% Similarity=0.118 Sum_probs=116.6
Q ss_pred eeeeeccCC----CCcccChhhhhcCCCccEEecCCc-ccccc-chhh-cccccCceeeecCcCCCCCCceEEeCCCcch
Q 044597 77 RLRENSIIP----SLKSLPSSFLSSLLNLYTLEMPFS-YIDHT-ADEF-WKMSKLRYLNFGAITLPAHPGKYSLHPCCST 149 (341)
Q Consensus 77 ~Lr~L~l~~----~~~~lp~~if~~L~~L~~L~Ls~~-~~~~l-p~~i-~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~ 149 (341)
.||.|++++ ....+-... .++++.+.|++.+| +++.- -.++ ..+.+|++|++.. ...+.+.. +
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~-~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~--------c~~iT~~~-L 208 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFA-SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHS--------CSSITDVS-L 208 (483)
T ss_pred ccccccccccccCCcchhhHHh-hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcc--------cchhHHHH-H
Confidence 456666652 223333334 66777777777776 33221 1122 3466677776654 01111111 2
Q ss_pred hhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCC--CCC--------------------CCccCc-cc
Q 044597 150 EEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESK--MPR--------------------RSNTIL-AE 206 (341)
Q Consensus 150 ~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e--~~~--------------------~l~~lp-~~ 206 (341)
+.....+++|.+++++++.......+-.-..+++.++.+...+|.| ++. .++... |.
T Consensus 209 k~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~ 288 (483)
T KOG4341|consen 209 KYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWL 288 (483)
T ss_pred HHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHH
Confidence 2212345566666666554211122222233333344443333321 000 333333 21
Q ss_pred c--cccCCccEEEEEeec-CCCCCCccCc-CCCCCCeEEE-EEe---CcEeeecCCCCCcccEEEEecCCCCCcee--ec
Q 044597 207 Y--QFPPSLTHLSFSNIE-LIDDPMPALE-KLPVLQVLKL-KYL---GRKLACSSDGFPKLKVLHLKSMLWLEEWT--MG 276 (341)
Q Consensus 207 ~--~lp~~L~~L~l~~~~-l~~~~~~~l~-~l~~L~~L~l-~~~---~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~ 276 (341)
. .. ..|+.+..++|. ++...+.+++ +.++|+.|.+ .+. +.-+..-....+.|+.+++..|....+-. .-
T Consensus 289 i~~~c-~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sl 367 (483)
T KOG4341|consen 289 IACGC-HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASL 367 (483)
T ss_pred Hhhhh-hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhh
Confidence 1 23 566777777766 2233334444 3678888877 111 11122223457788888887765444331 12
Q ss_pred CCCCCcccEEEEecCCCCCcc-----ccccCCCCCCcEEEEecCC
Q 044597 277 IKAMPKLECVIINPCAHLKRI-----PEQLWCLKSLNKLELWWPE 316 (341)
Q Consensus 277 ~~~l~~L~~L~l~~c~~l~~l-----p~~l~~l~~L~~L~l~~~~ 316 (341)
..++|.|+.+.+++|..++.. ..+-..+..|..+.+++||
T Consensus 368 s~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p 412 (483)
T KOG4341|consen 368 SRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCP 412 (483)
T ss_pred ccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCC
Confidence 236899999999999866654 2223447789999999999
No 58
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.76 E-value=0.00071 Score=34.61 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=18.0
Q ss_pred CccEEecCCccccccchhhccc
Q 044597 100 NLYTLEMPFSYIDHTADEFWKM 121 (341)
Q Consensus 100 ~L~~L~Ls~~~~~~lp~~i~~L 121 (341)
+|++||+++|.+..+|.+|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5899999999988999887654
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.73 E-value=0.0028 Score=51.94 Aligned_cols=100 Identities=21% Similarity=0.253 Sum_probs=57.1
Q ss_pred CCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc-ccc-cccCCccEEEEEeecCCC-CCCccCcCC
Q 044597 158 NLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL-AEY-QFPPSLTHLSFSNIELID-DPMPALEKL 234 (341)
Q Consensus 158 ~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp-~~~-~lp~~L~~L~l~~~~l~~-~~~~~l~~l 234 (341)
+...++++++. ...+ ..+..++.|.+|.++.| ++..+. -+. .+ ++|..|.+.+|.+.. ..+..+..+
T Consensus 43 ~~d~iDLtdNd---l~~l-~~lp~l~rL~tLll~nN-----rIt~I~p~L~~~~-p~l~~L~LtnNsi~~l~dl~pLa~~ 112 (233)
T KOG1644|consen 43 QFDAIDLTDND---LRKL-DNLPHLPRLHTLLLNNN-----RITRIDPDLDTFL-PNLKTLILTNNSIQELGDLDPLASC 112 (233)
T ss_pred ccceecccccc---hhhc-ccCCCccccceEEecCC-----cceeeccchhhhc-cccceEEecCcchhhhhhcchhccC
Confidence 34455555552 2222 34556677777777766 666664 433 34 678888888877532 345556677
Q ss_pred CCCCeEEE-EEeCcE----eeecCCCCCcccEEEEecC
Q 044597 235 PVLQVLKL-KYLGRK----LACSSDGFPKLKVLHLKSM 267 (341)
Q Consensus 235 ~~L~~L~l-~~~~~~----~~~~~~~~~~L~~L~l~~~ 267 (341)
|.|++|.+ ++.-.. -....-.+|+|+.|++.+.
T Consensus 113 p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 113 PKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 78888877 111110 0112235788888888764
No 60
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.68 E-value=3.3e-05 Score=65.97 Aligned_cols=112 Identities=22% Similarity=0.254 Sum_probs=70.2
Q ss_pred CCccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeCcEeeecCCCCCcccEEEEecCCCCCcee--ecCCCCCcccEEEE
Q 044597 211 PSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLGRKLACSSDGFPKLKVLHLKSMLWLEEWT--MGIKAMPKLECVII 288 (341)
Q Consensus 211 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~l~~L~~L~l 288 (341)
.+.++|+..+|.+ ..++...+++.|++|.|+.+..........+.+|++|.|+. +.++++. .-..++|+|+.|.+
T Consensus 19 ~~vkKLNcwg~~L--~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 19 ENVKKLNCWGCGL--DDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHhhhhcccCCCc--cHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHhh
Confidence 5667777777775 44445666777777777555544444455677777777775 3344443 12346899999999
Q ss_pred ecCCCCCcccc-----ccCCCCCCcEEEEecCC-hHHHHHhhh
Q 044597 289 NPCAHLKRIPE-----QLWCLKSLNKLELWWPE-PKLRQQLWE 325 (341)
Q Consensus 289 ~~c~~l~~lp~-----~l~~l~~L~~L~l~~~~-~~~~~~~~~ 325 (341)
..||--+.-+. .+.-||+|+.|+=...- .++.+.++.
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~VteeEle~ALr~ 138 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLDNVPVTEEELEEALRD 138 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhccCccccHHHHHHHHhc
Confidence 88885555443 34568888888744443 345555544
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.34 E-value=0.0086 Score=49.14 Aligned_cols=31 Identities=6% Similarity=0.155 Sum_probs=17.4
Q ss_pred CccEEecCCccccccchhhcccccCceeeecC
Q 044597 100 NLYTLEMPFSYIDHTADEFWKMSKLRYLNFGA 131 (341)
Q Consensus 100 ~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~ 131 (341)
....+||+.|.+..++ .+..++.|.+|.+.+
T Consensus 43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~n 73 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNN 73 (233)
T ss_pred ccceecccccchhhcc-cCCCccccceEEecC
Confidence 4455666666555543 244555666666655
No 62
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.93 E-value=0.0031 Score=54.07 Aligned_cols=41 Identities=24% Similarity=0.280 Sum_probs=18.8
Q ss_pred hCCCCCCceEEEEeecc--hhhhHHHHHhcCCCCCCEEEEEeC
Q 044597 153 LGRLPNLQNLRIWGDLS--YYQSLLSKSLCRLSCLESLKLANE 193 (341)
Q Consensus 153 l~~l~~L~~L~l~~~~~--~~~~~l~~~l~~l~~L~~L~l~~~ 193 (341)
+-+++.|++.+++.|.. .....+-.-+++-+.|++|.+++|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC
Confidence 44555555555555541 122223333444555555555554
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.82 E-value=0.00056 Score=58.63 Aligned_cols=81 Identities=22% Similarity=0.253 Sum_probs=47.4
Q ss_pred hcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhh--hCCCCCCceEEEEeec---ch
Q 044597 96 SSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEI--LGRLPNLQNLRIWGDL---SY 170 (341)
Q Consensus 96 ~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~--l~~l~~L~~L~l~~~~---~~ 170 (341)
.+++.|++|.||-|.|..+. .+..+++|+.|+|+.+.++. +.+. +.++++|+.|.+..|- ..
T Consensus 38 ~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~s------------ldEL~YLknlpsLr~LWL~ENPCc~~a 104 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIES------------LDELEYLKNLPSLRTLWLDENPCCGEA 104 (388)
T ss_pred HhcccceeEEeeccccccch-hHHHHHHHHHHHHHhccccc------------HHHHHHHhcCchhhhHhhccCCccccc
Confidence 57777777777777777773 46677777777777655543 3331 5666777777766543 11
Q ss_pred hhhHHHHHhcCCCCCCEEE
Q 044597 171 YQSLLSKSLCRLSCLESLK 189 (341)
Q Consensus 171 ~~~~l~~~l~~l~~L~~L~ 189 (341)
....-...+.-+++|+.|+
T Consensus 105 g~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 105 GQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred chhHHHHHHHHcccchhcc
Confidence 1111112345566666554
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.48 E-value=0.0022 Score=54.53 Aligned_cols=12 Identities=33% Similarity=0.589 Sum_probs=6.3
Q ss_pred ccccCceeeecC
Q 044597 120 KMSKLRYLNFGA 131 (341)
Q Consensus 120 ~L~~L~~L~l~~ 131 (341)
.|++|++|.++.
T Consensus 63 ~Lp~LkkL~lsd 74 (260)
T KOG2739|consen 63 KLPKLKKLELSD 74 (260)
T ss_pred CcchhhhhcccC
Confidence 355555555554
No 65
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.33 E-value=0.0031 Score=48.51 Aligned_cols=83 Identities=22% Similarity=0.221 Sum_probs=54.8
Q ss_pred CcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhh
Q 044597 74 QEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEI 152 (341)
Q Consensus 74 ~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~ 152 (341)
...+|...+++ +.++++|+.+-.+.+-+++|++++|.+..+|.++..++.|+.|+++.+.+- .. +.-
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~----------~~-p~v- 118 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLN----------AE-PRV- 118 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccc----------cc-hHH-
Confidence 45667777776 567777777634445778888888888888888888888888888774332 11 333
Q ss_pred hCCCCCCceEEEEeec
Q 044597 153 LGRLPNLQNLRIWGDL 168 (341)
Q Consensus 153 l~~l~~L~~L~l~~~~ 168 (341)
+..+.++-.|+..++.
T Consensus 119 i~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 119 IAPLIKLDMLDSPENA 134 (177)
T ss_pred HHHHHhHHHhcCCCCc
Confidence 4456666666665553
No 66
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.31 E-value=0.011 Score=28.05 Aligned_cols=17 Identities=24% Similarity=0.270 Sum_probs=10.8
Q ss_pred CCccEEecCCccccccc
Q 044597 99 LNLYTLEMPFSYIDHTA 115 (341)
Q Consensus 99 ~~L~~L~Ls~~~~~~lp 115 (341)
++|++|++++|.+..+|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 47889999999888776
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.22 E-value=0.013 Score=49.98 Aligned_cols=108 Identities=24% Similarity=0.240 Sum_probs=62.6
Q ss_pred CCcceeeeeccCC-CCcccChhhhhcCCCccEEecCCc--cc-cccchhhcccccCceeeecCcCCCCCCceEEeCCCcc
Q 044597 73 DQEVRLRENSIIP-SLKSLPSSFLSSLLNLYTLEMPFS--YI-DHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCS 148 (341)
Q Consensus 73 ~~l~~Lr~L~l~~-~~~~lp~~if~~L~~L~~L~Ls~~--~~-~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~ 148 (341)
..+..+.+|++.+ .++++- .+ -.|++|++|++|.| .+ ..++....++++|++|+++++.+.. + ..
T Consensus 40 d~~~~le~ls~~n~gltt~~-~~-P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~------l--st- 108 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLT-NF-PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD------L--ST- 108 (260)
T ss_pred ccccchhhhhhhccceeecc-cC-CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc------c--cc-
Confidence 3445555555542 333332 22 56889999999998 32 3455556667999999988833321 0 22
Q ss_pred hhhhhCCCCCCceEEEEeecchhhh-HHHHHhcCCCCCCEEEEEe
Q 044597 149 TEEILGRLPNLQNLRIWGDLSYYQS-LLSKSLCRLSCLESLKLAN 192 (341)
Q Consensus 149 ~~~~l~~l~~L~~L~l~~~~~~~~~-~l~~~l~~l~~L~~L~l~~ 192 (341)
++. +..+.+|..|++.+|...... .--..+.-+++|+.|+-..
T Consensus 109 l~p-l~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 109 LRP-LKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred cch-hhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 444 677778888888887622211 1112345566676666544
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.87 E-value=0.0019 Score=61.49 Aligned_cols=89 Identities=20% Similarity=0.143 Sum_probs=45.3
Q ss_pred hcCCCccEEecCCc--cccccc----hhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhC-CCCCCceEEEEeec
Q 044597 96 SSLLNLYTLEMPFS--YIDHTA----DEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILG-RLPNLQNLRIWGDL 168 (341)
Q Consensus 96 ~~L~~L~~L~Ls~~--~~~~lp----~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~ 168 (341)
...++|+.|+++++ .+...+ .....+.+|+.|+++... .+.... +.. +. .+++|++|.+.++.
T Consensus 211 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~--------~isd~~-l~~-l~~~c~~L~~L~l~~c~ 280 (482)
T KOG1947|consen 211 LKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCG--------LVTDIG-LSA-LASRCPNLETLSLSNCS 280 (482)
T ss_pred hhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhh--------ccCchh-HHH-HHhhCCCcceEccCCCC
Confidence 56666666666652 111111 122334666666666511 011122 333 32 36677777755554
Q ss_pred chhhhHHHHHhcCCCCCCEEEEEeCC
Q 044597 169 SYYQSLLSKSLCRLSCLESLKLANES 194 (341)
Q Consensus 169 ~~~~~~l~~~l~~l~~L~~L~l~~~~ 194 (341)
.....++......+++|+.|++++|.
T Consensus 281 ~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 281 NLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred ccchhHHHHHHHhcCcccEEeeecCc
Confidence 32334555555666777777777664
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.65 E-value=0.053 Score=41.42 Aligned_cols=59 Identities=15% Similarity=0.247 Sum_probs=26.9
Q ss_pred cCCcceeeeeccCCCCcccChhhhhcCCCccEEecCCccccccch-hhcccccCceeeecC
Q 044597 72 MDQEVRLRENSIIPSLKSLPSSFLSSLLNLYTLEMPFSYIDHTAD-EFWKMSKLRYLNFGA 131 (341)
Q Consensus 72 ~~~l~~Lr~L~l~~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~-~i~~L~~L~~L~l~~ 131 (341)
+..+.+|+.+.+...+..++...|..+++|+.+.+..+ +..++. .+..+.+|+.+.+..
T Consensus 8 F~~~~~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 8 FYNCSNLESITFPNTIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp TTT-TT--EEEETST--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS
T ss_pred HhCCCCCCEEEECCCeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc
Confidence 34445555565555566666666666666666666654 444443 345555566666543
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.32 E-value=0.0053 Score=50.32 Aligned_cols=62 Identities=21% Similarity=0.368 Sum_probs=44.6
Q ss_pred CCCcccEEEEecCCCCCceeec--CCCCCcccEEEEecCCCCCccc-cccCCCCCCcEEEEecCC
Q 044597 255 GFPKLKVLHLKSMLWLEEWTMG--IKAMPKLECVIINPCAHLKRIP-EQLWCLKSLNKLELWWPE 316 (341)
Q Consensus 255 ~~~~L~~L~l~~~~~l~~~~~~--~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~ 316 (341)
.+++++.|.+.+|..+.+|..+ .+-.|+|+.|++++|+.+++-. .++..+++|+.|.+.+.+
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence 4566777777777777776532 2357889999999998877632 356778888888888866
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.51 E-value=0.0029 Score=60.18 Aligned_cols=111 Identities=23% Similarity=0.190 Sum_probs=59.2
Q ss_pred CCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEe-CCCCCCCCccCc-----ccccccCCccEEEEEeec-CCCCC
Q 044597 155 RLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLAN-ESKMPRRSNTIL-----AEYQFPPSLTHLSFSNIE-LIDDP 227 (341)
Q Consensus 155 ~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~-~~e~~~~l~~lp-----~~~~lp~~L~~L~l~~~~-l~~~~ 227 (341)
.+++|+.|.+..+.......+.......++|+.|+++. +. .....+ ..... ++|+.|+++.|. ++...
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~----~~~~~~~~~~~~~~~~-~~L~~l~l~~~~~isd~~ 260 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCL----LITLSPLLLLLLLSIC-RKLKSLDLSGCGLVTDIG 260 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCccc----ccccchhHhhhhhhhc-CCcCccchhhhhccCchh
Confidence 46777777777665222222445566777777777765 21 111111 11234 667777777776 44444
Q ss_pred CccCcC-CCCCCeEEEE-Ee---CcEeeecCCCCCcccEEEEecCCCC
Q 044597 228 MPALEK-LPVLQVLKLK-YL---GRKLACSSDGFPKLKVLHLKSMLWL 270 (341)
Q Consensus 228 ~~~l~~-l~~L~~L~l~-~~---~~~~~~~~~~~~~L~~L~l~~~~~l 270 (341)
+..+.. +++|+.|.+. +. +..+......+++|++|++++|..+
T Consensus 261 l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 261 LSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred HHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 444433 6677777651 11 1111122335667777777766654
No 72
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.37 E-value=0.07 Score=28.23 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=17.9
Q ss_pred CCCccEEecCCccccccchhh
Q 044597 98 LLNLYTLEMPFSYIDHTADEF 118 (341)
Q Consensus 98 L~~L~~L~Ls~~~~~~lp~~i 118 (341)
|++|++|+|++|.+..+|.++
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 568899999999999998764
No 73
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.37 E-value=0.07 Score=28.23 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=17.9
Q ss_pred CCCccEEecCCccccccchhh
Q 044597 98 LLNLYTLEMPFSYIDHTADEF 118 (341)
Q Consensus 98 L~~L~~L~Ls~~~~~~lp~~i 118 (341)
|++|++|+|++|.+..+|.++
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 568899999999999998764
No 74
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.54 E-value=0.12 Score=39.46 Aligned_cols=86 Identities=14% Similarity=0.269 Sum_probs=41.5
Q ss_pred ccChhhhhcCCCccEEecCCccccccch-hhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEEEee
Q 044597 89 SLPSSFLSSLLNLYTLEMPFSYIDHTAD-EFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGD 167 (341)
Q Consensus 89 ~lp~~if~~L~~L~~L~Ls~~~~~~lp~-~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 167 (341)
++++..|.++++|+.+.+.. .+..++. .+..+++|+.+.+... +. .. ...++..+++|+++.+.+.
T Consensus 2 ~i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~----------~i-~~~~F~~~~~l~~i~~~~~ 68 (129)
T PF13306_consen 2 SIGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT----------SI-GDNAFSNCKSLESITFPNN 68 (129)
T ss_dssp EE-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS----------CE--TTTTTT-TT-EEEEETST
T ss_pred EECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc----------cc-ceeeeeccccccccccccc
Confidence 46777778888999998875 4555644 4677778888877651 11 11 1111666666777777431
Q ss_pred cchhhhHHH-HHhcCCCCCCEEEEE
Q 044597 168 LSYYQSLLS-KSLCRLSCLESLKLA 191 (341)
Q Consensus 168 ~~~~~~~l~-~~l~~l~~L~~L~l~ 191 (341)
...++ ..+..+++|+.+.+.
T Consensus 69 ----~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 69 ----LKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp ----T-EE-TTTTTT-TTECEEEET
T ss_pred ----ccccccccccccccccccccC
Confidence 11111 234456666666664
No 75
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=91.23 E-value=0.14 Score=44.32 Aligned_cols=187 Identities=16% Similarity=0.070 Sum_probs=101.0
Q ss_pred hcCCCccEEecCCccc-cccchh----hcccccCceeeecCcCCCCCCceEEeCCCc---------chhhhhCCCCCCce
Q 044597 96 SSLLNLYTLEMPFSYI-DHTADE----FWKMSKLRYLNFGAITLPAHPGKYSLHPCC---------STEEILGRLPNLQN 161 (341)
Q Consensus 96 ~~L~~L~~L~Ls~~~~-~~lp~~----i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~---------~~~~~l~~l~~L~~ 161 (341)
-++++|+..+||.|.+ .+.|.. |.+-..|.+|.++++-+-+ +.+.. ..+. ..+-+.|++
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp------~aG~rigkal~~la~nKK-aa~kp~Le~ 161 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGP------IAGGRIGKALFHLAYNKK-AADKPKLEV 161 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCc------cchhHHHHHHHHHHHHhh-hccCCCceE
Confidence 6889999999999933 334443 5566788888888722211 00111 0111 234466777
Q ss_pred EEEEeecc-hhh-hHHHHHhcCCCCCCEEEEEeCCCCCCCCcc-----Cc--ccccccCCccEEEEEeecCCCCCC----
Q 044597 162 LRIWGDLS-YYQ-SLLSKSLCRLSCLESLKLANESKMPRRSNT-----IL--AEYQFPPSLTHLSFSNIELIDDPM---- 228 (341)
Q Consensus 162 L~l~~~~~-~~~-~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~-----lp--~~~~lp~~L~~L~l~~~~l~~~~~---- 228 (341)
..+..|+. +.. ......+..-.+|+.+.+..| .+.. +- .+... .+|+.|++.+|.++...-
T Consensus 162 vicgrNRlengs~~~~a~~l~sh~~lk~vki~qN-----gIrpegv~~L~~~gl~y~-~~LevLDlqDNtft~~gS~~La 235 (388)
T COG5238 162 VICGRNRLENGSKELSAALLESHENLKEVKIQQN-----GIRPEGVTMLAFLGLFYS-HSLEVLDLQDNTFTLEGSRYLA 235 (388)
T ss_pred EEeccchhccCcHHHHHHHHHhhcCceeEEeeec-----CcCcchhHHHHHHHHHHh-CcceeeeccccchhhhhHHHHH
Confidence 77666651 111 122223444467777777765 2221 11 12245 788888888887644322
Q ss_pred ccCcCCCCCCeEEEEEe-----CcEee---ecCCCCCcccEEEEecCCCCCcee-------ecCCCCCcccEEEEecCCC
Q 044597 229 PALEKLPVLQVLKLKYL-----GRKLA---CSSDGFPKLKVLHLKSMLWLEEWT-------MGIKAMPKLECVIINPCAH 293 (341)
Q Consensus 229 ~~l~~l~~L~~L~l~~~-----~~~~~---~~~~~~~~L~~L~l~~~~~l~~~~-------~~~~~l~~L~~L~l~~c~~ 293 (341)
.++..++.|++|+++.+ +.... +....+|+|..|...+...-..+. +..+++|-|..|.+.+|+
T Consensus 236 ~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr- 314 (388)
T COG5238 236 DALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNR- 314 (388)
T ss_pred HHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCc-
Confidence 23456677788877221 11100 112246777777766522111111 234577888888888777
Q ss_pred CCc
Q 044597 294 LKR 296 (341)
Q Consensus 294 l~~ 296 (341)
++.
T Consensus 315 ~~E 317 (388)
T COG5238 315 IKE 317 (388)
T ss_pred chh
Confidence 444
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.00 E-value=0.034 Score=45.72 Aligned_cols=16 Identities=19% Similarity=0.210 Sum_probs=7.7
Q ss_pred hCCCCCCceEEEEeec
Q 044597 153 LGRLPNLQNLRIWGDL 168 (341)
Q Consensus 153 l~~l~~L~~L~l~~~~ 168 (341)
+.+++.++.|.+.+|.
T Consensus 121 L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCK 136 (221)
T ss_pred Hhccchhhhheecccc
Confidence 3444444455555544
No 77
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=80.53 E-value=1.3 Score=23.47 Aligned_cols=17 Identities=29% Similarity=0.360 Sum_probs=13.5
Q ss_pred CCCccEEecCCcccccc
Q 044597 98 LLNLYTLEMPFSYIDHT 114 (341)
Q Consensus 98 L~~L~~L~Ls~~~~~~l 114 (341)
+++|+.|+++.|.|..+
T Consensus 1 L~~L~~L~L~~NkI~~I 17 (26)
T smart00365 1 LTNLEELDLSQNKIKKI 17 (26)
T ss_pred CCccCEEECCCCcccee
Confidence 46889999999977655
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=78.07 E-value=0.16 Score=42.89 Aligned_cols=58 Identities=16% Similarity=0.078 Sum_probs=33.8
Q ss_pred CCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecC
Q 044597 73 DQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGA 131 (341)
Q Consensus 73 ~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~ 131 (341)
..+.+...|+++ +.+..+-..+ +.++.|..||++.|.+..+|..++.+..++++++..
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n~-s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~ 97 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKNF-SILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHK 97 (326)
T ss_pred hccceeeeehhhhhHHHhhccch-HHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhc
Confidence 344555566665 2444444444 556666666666666666666666666666665554
No 79
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=77.06 E-value=1.3 Score=23.24 Aligned_cols=15 Identities=20% Similarity=0.580 Sum_probs=7.9
Q ss_pred CcccEEEEecCCCCC
Q 044597 281 PKLECVIINPCAHLK 295 (341)
Q Consensus 281 ~~L~~L~l~~c~~l~ 295 (341)
++|+.|++.+|++++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 455555555555443
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=76.36 E-value=1.7 Score=22.24 Aligned_cols=16 Identities=31% Similarity=0.266 Sum_probs=9.9
Q ss_pred CCCccEEecCCccccc
Q 044597 98 LLNLYTLEMPFSYIDH 113 (341)
Q Consensus 98 L~~L~~L~Ls~~~~~~ 113 (341)
+++|++|++++|.+..
T Consensus 1 ~~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 1 NPNLETLDLSNNQITD 16 (24)
T ss_dssp -TT-SEEE-TSSBEHH
T ss_pred CCCCCEEEccCCcCCH
Confidence 4678899999987643
No 81
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=76.07 E-value=1.6 Score=23.08 Aligned_cols=18 Identities=11% Similarity=0.145 Sum_probs=15.3
Q ss_pred CCccEEecCCccccccch
Q 044597 99 LNLYTLEMPFSYIDHTAD 116 (341)
Q Consensus 99 ~~L~~L~Ls~~~~~~lp~ 116 (341)
.+|++|+.++|.+..+|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 468899999999998886
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=68.75 E-value=0.26 Score=41.64 Aligned_cols=61 Identities=10% Similarity=-0.059 Sum_probs=52.7
Q ss_pred ccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCc
Q 044597 71 IMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAI 132 (341)
Q Consensus 71 ~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~ 132 (341)
.++-++++-.|+++ +.+..+|... +++..++.+++..|+.+..|.++++++.++++++..+
T Consensus 60 n~s~~t~~~rl~~sknq~~~~~~d~-~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~ 121 (326)
T KOG0473|consen 60 NFSILTRLVRLDLSKNQIKFLPKDA-KQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKT 121 (326)
T ss_pred chHHHHHHHHHhccHhhHhhChhhH-HHHHHHHHHHhhccchhhCCccccccCCcchhhhccC
Confidence 34456777778887 6888999999 9999999999999999999999999999999998873
No 83
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=66.33 E-value=4.4 Score=21.71 Aligned_cols=14 Identities=14% Similarity=0.221 Sum_probs=11.0
Q ss_pred CCccEEecCCcccc
Q 044597 99 LNLYTLEMPFSYID 112 (341)
Q Consensus 99 ~~L~~L~Ls~~~~~ 112 (341)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 57888999988664
No 84
>cd04443 DEP_GPR155 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in GPR155-like proteins. GRP155-like proteins, also known as PGR22, contain an N-terminal permease domain, a central transmembrane region and a C-terminal DEP domain. They are orphan receptors of the class B G protein-coupled receptors. Their function is unknown.
Probab=54.32 E-value=16 Score=25.56 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=27.9
Q ss_pred ChHHHHHHcCCCCCCcHHHHHHHHHHHHHCCCcccccC
Q 044597 1 QLYQLWIAEGFIPDNNEAITEKYLEQLINGAFVDAGKR 38 (341)
Q Consensus 1 ~Li~~WiaeG~i~~~~e~~g~~~l~eL~~~~~lq~~~~ 38 (341)
++|.+.+..|.+..+.| |-.+-+.|.+.+++..+..
T Consensus 35 elVdWL~~~~~~~sR~e--Av~lg~~Ll~~G~i~HV~~ 70 (83)
T cd04443 35 DLVSWLIEVGLAQDRGE--AVLYGRRLLQGGVLQHITN 70 (83)
T ss_pred HHHHHHHHcCCCCCHHH--HHHHHHHHHHCCCEEecCC
Confidence 46776666677776655 7889999999999998764
No 85
>PF14162 YozD: YozD-like protein
Probab=54.30 E-value=16 Score=22.77 Aligned_cols=20 Identities=25% Similarity=0.534 Sum_probs=17.5
Q ss_pred cHHHHHHHHHHHHHCCCccc
Q 044597 16 NEAITEKYLEQLINGAFVDA 35 (341)
Q Consensus 16 ~e~~g~~~l~eL~~~~~lq~ 35 (341)
.|++|+=++.+|+.|+++-.
T Consensus 10 TEEIAefFy~eL~kRGyvP~ 29 (57)
T PF14162_consen 10 TEEIAEFFYHELVKRGYVPT 29 (57)
T ss_pred HHHHHHHHHHHHHHccCCCc
Confidence 38899999999999999853
No 86
>COG5626 Uncharacterized small conserved protein [Function unknown]
Probab=41.18 E-value=26 Score=24.48 Aligned_cols=20 Identities=30% Similarity=0.606 Sum_probs=15.0
Q ss_pred HHHHHHcCCCCCCcHHHHHH
Q 044597 3 YQLWIAEGFIPDNNEAITEK 22 (341)
Q Consensus 3 i~~WiaeG~i~~~~e~~g~~ 22 (341)
|+.||.||+|....|+...+
T Consensus 53 V~~Wise~lisKp~e~~l~d 72 (97)
T COG5626 53 VAAWISEGLISKPGEDALKD 72 (97)
T ss_pred HHHHHhccCcCCCCHHHHhh
Confidence 68899999998766554433
No 87
>cd04440 DEP_2_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=39.91 E-value=39 Score=24.26 Aligned_cols=36 Identities=19% Similarity=0.148 Sum_probs=28.9
Q ss_pred ChHHHHHHcCCCCCCcHHHHHHHHHHHHHCCCcccccC
Q 044597 1 QLYQLWIAEGFIPDNNEAITEKYLEQLINGAFVDAGKR 38 (341)
Q Consensus 1 ~Li~~WiaeG~i~~~~e~~g~~~l~eL~~~~~lq~~~~ 38 (341)
|||.+=|.+|-+.++.| |..|-..|.+.++++-+..
T Consensus 42 ElVdWLi~~g~~~tR~e--Av~~gq~Ll~~gii~HV~~ 77 (93)
T cd04440 42 KLVDWLLAQGDCRTREE--AVILGVGLCNNGFMHHVLE 77 (93)
T ss_pred HHHHHHHHcCCCCCHHH--HHHHHHHHHhCCCEEecCC
Confidence 46777778888775555 7899999999999997764
No 88
>cd04441 DEP_2_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=38.66 E-value=40 Score=23.78 Aligned_cols=36 Identities=11% Similarity=0.219 Sum_probs=26.9
Q ss_pred ChHHHHHHcCCCCCCcHHHHHHHHHHHHHCCCcccccC
Q 044597 1 QLYQLWIAEGFIPDNNEAITEKYLEQLINGAFVDAGKR 38 (341)
Q Consensus 1 ~Li~~WiaeG~i~~~~e~~g~~~l~eL~~~~~lq~~~~ 38 (341)
|+|.+=+..|.+..+.| |-+|-..|.+.++++.+..
T Consensus 37 ElVdWL~~~~~~~sR~e--Av~lgq~Ll~~gii~HV~~ 72 (85)
T cd04441 37 EFIDWLLQEGEAESRRE--AVQLCRRLLEHGIIQHVSN 72 (85)
T ss_pred HHHHHHHHcCCCCCHHH--HHHHHHHHHHCCCEEecCC
Confidence 46666677775544444 8899999999999998764
No 89
>cd04438 DEP_dishevelled DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in dishevelled-like proteins. Dishevelled-like proteins play a key role in the transduction of the Wnt signal from the cell surface to the nucleus, which in turn is an important regulatory pathway for cellular development and growth. They contain an N-terminal DIX domain, a central PDZ domain, and a C-terminal DEP domain.
Probab=37.97 E-value=53 Score=23.08 Aligned_cols=34 Identities=18% Similarity=0.419 Sum_probs=25.4
Q ss_pred hHHHHHHcCC--CCCCcHHHHHHHHHHHHHCCCcccccC
Q 044597 2 LYQLWIAEGF--IPDNNEAITEKYLEQLINGAFVDAGKR 38 (341)
Q Consensus 2 Li~~WiaeG~--i~~~~e~~g~~~l~eL~~~~~lq~~~~ 38 (341)
||. |+.+-+ +..+ +.|..|-..|.+.+++..+.+
T Consensus 35 lVd-WL~~~~~~~~~R--~eAv~~g~~Ll~~G~i~HV~~ 70 (84)
T cd04438 35 LVD-WLLSHVEGLTDR--REARKYASSLLKLGYIRHTVN 70 (84)
T ss_pred HHH-HHHHhCCCCCCH--HHHHHHHHHHHHCCcEEecCC
Confidence 555 888755 4444 448899999999999997754
No 90
>cd04449 DEP_DEPDC5-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC5-like proteins. DEPDC5, in human also known as KIAA0645, is a DEP domain containing protein of unknown function.
Probab=37.52 E-value=51 Score=23.01 Aligned_cols=36 Identities=11% Similarity=0.263 Sum_probs=26.3
Q ss_pred hHHHHHHcCCCCCCcHHHHHHHHHHHHHCCCcccccC
Q 044597 2 LYQLWIAEGFIPDNNEAITEKYLEQLINGAFVDAGKR 38 (341)
Q Consensus 2 Li~~WiaeG~i~~~~e~~g~~~l~eL~~~~~lq~~~~ 38 (341)
+|. |+.+-+-....++.|-.+-+.|.+.++++.+..
T Consensus 35 ~Vd-WL~~~~~~~~~r~eAv~lgq~Ll~~g~I~hv~~ 70 (83)
T cd04449 35 AVS-WLINNFEDVDTREEAVELGQELMNEGLIEHVSG 70 (83)
T ss_pred HHH-HHHHhCCCCCCHHHHHHHHHHHHHCCCEEecCC
Confidence 455 877765433344558899999999999998764
No 91
>cd04448 DEP_PIKfyve DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGEF (GDP/GTP exchange factor) PIKfyve-like proteins. PIKfyve contains N-terminal Fyve finger and DEP domains, a central chaperonin-like domain and a C-terminal PIPK (phosphatidylinositol phosphate kinase) domain. PIKfyve-like proteins are important phosphatidylinositol (3)-monophosphate (PtdIns(3)P)-5-kinases, producing PtdIns(3,5)P2, which plays a major role in multivesicular body (MVB) sorting and control of retrograde traffic from the vacuole back to the endosome and/or Golgi. PIKfyve itself has been shown to be play a role in regulating early-endosome-to-trans-Golgi network (TGN) retrograde trafficking.
Probab=33.26 E-value=55 Score=22.78 Aligned_cols=37 Identities=11% Similarity=0.204 Sum_probs=26.9
Q ss_pred ChHHHHHHcCCCCCCcHHHHHHHHHHHHHCCCcccccCC
Q 044597 1 QLYQLWIAEGFIPDNNEAITEKYLEQLINGAFVDAGKRS 39 (341)
Q Consensus 1 ~Li~~WiaeG~i~~~~e~~g~~~l~eL~~~~~lq~~~~~ 39 (341)
++|.+=+.+|.+..+.| |-.+-..|.+.++++.+..+
T Consensus 33 elVdWL~~~~~~~~R~e--Av~~gq~Ll~~g~i~hV~~~ 69 (81)
T cd04448 33 ELVNWLIRQGKAATRVQ--AIAIGQALLDAGWIECVSDD 69 (81)
T ss_pred HHHHHHHHcCCCCCHHH--HHHHHHHHHHCCCEEecCCC
Confidence 35665566666654444 88899999999999988643
No 92
>PF10052 DUF2288: Protein of unknown function (DUF2288); InterPro: IPR018741 Members of this family of hypothetical bacterial proteins have no known function.
Probab=31.03 E-value=59 Score=23.38 Aligned_cols=22 Identities=18% Similarity=0.498 Sum_probs=16.2
Q ss_pred hHHHHHHcCCCCCCcHHHHHHH
Q 044597 2 LYQLWIAEGFIPDNNEAITEKY 23 (341)
Q Consensus 2 Li~~WiaeG~i~~~~e~~g~~~ 23 (341)
-|+.||++|.|..-.++.+..+
T Consensus 51 ~V~~Wi~~g~v~k~s~~qa~~W 72 (93)
T PF10052_consen 51 QVQAWIESGQVAKPSDEQAQDW 72 (93)
T ss_pred HHHHHHHCCCcCCCCHHHHHHH
Confidence 3789999999987655555554
No 93
>cd04442 DEP_1_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=27.81 E-value=82 Score=22.01 Aligned_cols=36 Identities=14% Similarity=0.203 Sum_probs=26.5
Q ss_pred ChHHHHHHcCCCCCCcHHHHHHHHHHHHHCCCcccccC
Q 044597 1 QLYQLWIAEGFIPDNNEAITEKYLEQLINGAFVDAGKR 38 (341)
Q Consensus 1 ~Li~~WiaeG~i~~~~e~~g~~~l~eL~~~~~lq~~~~ 38 (341)
++|.+=+..|.+.++.| |-.|-..|.+.++++.+..
T Consensus 33 elVdWL~~~~~~~sR~e--Av~lgq~Ll~~gvi~HV~~ 68 (82)
T cd04442 33 ELIDWLIEHKEASDRET--AIKIMQKLLDHSIIHHVCD 68 (82)
T ss_pred HHHHHHHHcCCCCCHHH--HHHHHHHHHHCCCEEeccC
Confidence 35666666666544444 8899999999999998854
No 94
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=27.13 E-value=26 Score=33.78 Aligned_cols=40 Identities=20% Similarity=0.108 Sum_probs=20.5
Q ss_pred CCCCcccEEEEecCC-CCCc-eeecCCCCCcccEEEEecCCC
Q 044597 254 DGFPKLKVLHLKSML-WLEE-WTMGIKAMPKLECVIINPCAH 293 (341)
Q Consensus 254 ~~~~~L~~L~l~~~~-~l~~-~~~~~~~l~~L~~L~l~~c~~ 293 (341)
...|+|++|+|++.. .+.. +....-....|++|.+.+||-
T Consensus 241 q~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPl 282 (585)
T KOG3763|consen 241 QIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPL 282 (585)
T ss_pred HhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcc
Confidence 356777777777631 1111 111111345577777777773
No 95
>PF00610 DEP: Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP); InterPro: IPR000591 This entry represents the DEP (Dishevelled, Egl-10 and Pleckstrin) domain, a globular domain of about 80 residues that is found in over 50 proteins involved in G-protein signalling pathways. It was named after the three proteins it was initially found in: Dishevelled (Dsh and Dvl), which play a key role in the transduction of the Wg/Wnt signal from the cell surface to the nucleus; it is a segment polarity protein required to establish coherent arrays of polarized cells and segments in embryos, and plays a role in wingless signalling. Egl-10, which regulates G-protein signalling in the central nervous system. Pleckstrin, the major substrate of protein kinase C in platelets; Pleckstrin contains two PH domains flanking the DEP domain. Mammalian regulators of G-protein signalling also contain these domains, and regulate signal transduction by increasing the GTPase activity of G-protein alpha subunits, thereby driving them into their inactive GDP-bound form. It has been proposed that the DEP domain could play a selective role in targeting DEP domain-containing proteins to specific subcellular membranous sites, perhaps even to specific G protein-coupled signaling pathways [, ]. Nuclear magnetic resonance spectroscopy has revealed that the DEP domain comprises a three-helix bundle, a beta-hairpin 'arm' composed of two beta-strands and two short beta-strands in the C-terminal region [].; GO: 0035556 intracellular signal transduction; PDB: 1UHW_A 1V3F_A 2YSR_A 2CSO_A 1W4M_A 2PBI_C 1O7F_A 2BYV_E 1FSH_A 3ML6_D ....
Probab=26.22 E-value=79 Score=21.14 Aligned_cols=32 Identities=25% Similarity=0.637 Sum_probs=24.4
Q ss_pred HHH---cCCCCCCcHHHHHHHHHHHHHCCCcccccCC
Q 044597 6 WIA---EGFIPDNNEAITEKYLEQLINGAFVDAGKRS 39 (341)
Q Consensus 6 Wia---eG~i~~~~e~~g~~~l~eL~~~~~lq~~~~~ 39 (341)
|+. +|++..+.+ |..+-++|++.++++.+...
T Consensus 26 WL~~~~~~~~~~r~e--A~~l~q~Ll~~g~i~~v~~~ 60 (74)
T PF00610_consen 26 WLMDNFEGFVRDREE--AVQLGQELLDHGFIEHVSDK 60 (74)
T ss_dssp HHHHTSCTSTSSHHH--HHHHHHHHHHCTSEEESSSS
T ss_pred HHHHhccccccCHHH--HHHHHHHHHHCCCEEECCCC
Confidence 555 566665554 88999999999999987654
No 96
>smart00422 HTH_MERR helix_turn_helix, mercury resistance.
Probab=24.24 E-value=16 Score=24.22 Aligned_cols=12 Identities=17% Similarity=0.498 Sum_probs=10.0
Q ss_pred HHHHHHcCCCCC
Q 044597 3 YQLWIAEGFIPD 14 (341)
Q Consensus 3 i~~WiaeG~i~~ 14 (341)
+++|..+|++.+
T Consensus 17 lr~~~~~gli~~ 28 (70)
T smart00422 17 LRYYERIGLLPP 28 (70)
T ss_pred HHHHHHCCCCCC
Confidence 688999999875
No 97
>cd04761 HTH_MerR-SF Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily. Helix-turn-helix (HTH) transcription regulator MerR superfamily, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=23.23 E-value=57 Score=19.52 Aligned_cols=13 Identities=8% Similarity=0.243 Sum_probs=10.9
Q ss_pred hHHHHHHcCCCCC
Q 044597 2 LYQLWIAEGFIPD 14 (341)
Q Consensus 2 Li~~WiaeG~i~~ 14 (341)
-|++|..+|++.+
T Consensus 16 tlr~~~~~g~l~~ 28 (49)
T cd04761 16 TLRYYERIGLLSP 28 (49)
T ss_pred HHHHHHHCCCCCC
Confidence 3789999999874
No 98
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=23.18 E-value=1.4e+02 Score=17.68 Aligned_cols=9 Identities=56% Similarity=0.862 Sum_probs=4.4
Q ss_pred cCCccEEEE
Q 044597 210 PPSLTHLSF 218 (341)
Q Consensus 210 p~~L~~L~l 218 (341)
|+++++|.+
T Consensus 11 P~~l~~L~~ 19 (44)
T PF05725_consen 11 PSSLKSLIF 19 (44)
T ss_pred CCCCeEEEE
Confidence 444555555
No 99
>cd04444 DEP_PLEK2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 2-like proteins. Pleckstrin 2 is found in a wide variety of cell types, which suggest a more general role in signaling than pleckstrin 1. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=22.24 E-value=69 Score=23.74 Aligned_cols=41 Identities=15% Similarity=0.202 Sum_probs=29.9
Q ss_pred ChHHHHHHcCCCCCCcHHHHHHHHHHHHHCCCcccccCCCCCc
Q 044597 1 QLYQLWIAEGFIPDNNEAITEKYLEQLINGAFVDAGKRSDISR 43 (341)
Q Consensus 1 ~Li~~WiaeG~i~~~~e~~g~~~l~eL~~~~~lq~~~~~~~~~ 43 (341)
++|.+-|.+|.+..+.| |..|=.+|++.++++++.....+.
T Consensus 36 e~VDWLv~~~~~i~R~E--Av~l~q~Lmd~gli~hV~~~s~~~ 76 (109)
T cd04444 36 ALVDWLISNSFAASRLE--AVTLASMLMEENFLRPVGVRSMGA 76 (109)
T ss_pred HHHHHHHHCCCCCCHHH--HHHHHHHHHhCCchhhHHHHhhhh
Confidence 35676677777664445 788889999999999987654443
No 100
>cd04439 DEP_1_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and by the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=22.01 E-value=1.1e+02 Score=21.20 Aligned_cols=36 Identities=8% Similarity=0.087 Sum_probs=25.0
Q ss_pred ChHHHHHHcCCCCCCcHHHHHHHHHHHHHCCCcccccC
Q 044597 1 QLYQLWIAEGFIPDNNEAITEKYLEQLINGAFVDAGKR 38 (341)
Q Consensus 1 ~Li~~WiaeG~i~~~~e~~g~~~l~eL~~~~~lq~~~~ 38 (341)
++|.+=+..|.+... +.|-.+-+.|.+.+++..+..
T Consensus 33 elVdWL~~~~~~~~r--~eAv~lg~~Ll~~G~i~HV~~ 68 (81)
T cd04439 33 EFVSWLLEIGEISKP--EEGVNLGQALLENGIIHHVSD 68 (81)
T ss_pred HHHHHHHHcCCCCCH--HHHHHHHHHHHHCCCEEecCC
Confidence 356644445555543 347889999999999998764
No 101
>PF08362 TetR_C_3: YcdC-like protein, C-terminal region; InterPro: IPR013573 This entry represents the C-terminal domain found in the hypothetical transcriptional regulators RutR and YcdC (P75899 from SWISSPROT) from Escherichia coli. Both of these proteins are member of the TetR (tetracycline resistance) transcriptional regulator family of proteins. RutR negatively controls the transcription of the rut operon involved in pyrimidine utilization. The C-terminal domains of RutR, YsiA and TetR share a multi-helical, interlocking structure. These proteins also contain helix-turn-helix (HTH) DNA-binding domains.; GO: 0045892 negative regulation of transcription, DNA-dependent; PDB: 3LOC_B.
Probab=21.22 E-value=58 Score=25.50 Aligned_cols=13 Identities=38% Similarity=0.764 Sum_probs=11.1
Q ss_pred hHHHHHHcCCCCC
Q 044597 2 LYQLWIAEGFIPD 14 (341)
Q Consensus 2 Li~~WiaeG~i~~ 14 (341)
+|+.||++|.+.+
T Consensus 75 ~I~~Wi~~G~i~~ 87 (143)
T PF08362_consen 75 VIERWIAQGKIAP 87 (143)
T ss_dssp HHHHHHHTTSS-S
T ss_pred HHHHHHHCCCCCC
Confidence 7899999999976
Done!