Query 044597
Match_columns 341
No_of_seqs 265 out of 2697
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 08:07:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044597.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044597hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.9 4E-25 1.4E-29 199.0 12.3 220 75-316 80-312 (328)
2 4fcg_A Uncharacterized protein 99.9 2.7E-22 9.1E-27 180.5 12.4 199 97-316 79-288 (328)
3 3rgz_A Protein brassinosteroid 99.9 3.9E-22 1.3E-26 199.1 8.0 254 75-340 393-765 (768)
4 1ogq_A PGIP-2, polygalacturona 99.8 1.1E-22 3.6E-27 182.0 2.4 219 77-316 51-279 (313)
5 3o6n_A APL1; leucine-rich repe 99.8 2.5E-21 8.5E-26 178.3 10.4 109 72-193 65-175 (390)
6 3o6n_A APL1; leucine-rich repe 99.8 7.6E-21 2.6E-25 175.0 12.5 220 71-316 88-350 (390)
7 2id5_A Lingo-1, leucine rich r 99.8 1.3E-20 4.6E-25 177.9 13.8 225 71-316 51-283 (477)
8 1ogq_A PGIP-2, polygalacturona 99.8 1.2E-21 4E-26 175.2 6.1 228 67-316 67-302 (313)
9 1xku_A Decorin; proteoglycan, 99.8 2.7E-20 9.4E-25 167.4 14.2 230 76-316 52-304 (330)
10 3oja_B Anopheles plasmodium-re 99.8 1.1E-20 3.8E-25 183.4 11.5 107 205-316 249-356 (597)
11 3oja_B Anopheles plasmodium-re 99.8 1.1E-20 3.8E-25 183.4 10.2 223 72-316 71-335 (597)
12 2z80_A TOLL-like receptor 2, v 99.8 5.8E-21 2E-25 173.5 7.6 223 72-316 72-312 (353)
13 3o53_A Protein LRIM1, AGAP0063 99.8 4.7E-21 1.6E-25 171.6 6.5 214 73-316 31-248 (317)
14 2z66_A Variable lymphocyte rec 99.8 9.6E-21 3.3E-25 168.6 8.2 219 76-316 28-259 (306)
15 2id5_A Lingo-1, leucine rich r 99.8 1E-19 3.5E-24 171.9 15.2 226 70-316 74-307 (477)
16 3zyi_A Leucine-rich repeat-con 99.8 6.2E-20 2.1E-24 172.3 12.3 218 76-316 75-301 (452)
17 4eco_A Uncharacterized protein 99.8 4E-20 1.4E-24 180.7 10.8 118 69-193 266-412 (636)
18 3zyj_A Leucine-rich repeat-con 99.8 1.1E-19 3.8E-24 170.0 12.7 218 76-316 64-290 (440)
19 3oja_A Leucine-rich immune mol 99.8 2E-20 7E-25 177.0 7.6 214 73-316 31-248 (487)
20 1ozn_A Reticulon 4 receptor; N 99.8 1.9E-19 6.6E-24 158.5 13.0 213 80-316 15-236 (285)
21 4eco_A Uncharacterized protein 99.8 1.8E-20 6.2E-25 183.1 7.0 182 89-292 197-413 (636)
22 2ft3_A Biglycan; proteoglycan, 99.8 8.6E-20 3E-24 164.3 10.9 229 76-316 54-305 (332)
23 3rgz_A Protein brassinosteroid 99.8 1.9E-20 6.4E-25 186.9 7.0 235 71-316 288-549 (768)
24 4ecn_A Leucine-rich repeat pro 99.8 1.6E-19 5.5E-24 180.6 12.3 231 71-316 568-838 (876)
25 3v47_A TOLL-like receptor 5B a 99.8 2.7E-19 9.2E-24 167.9 12.8 126 183-316 275-406 (455)
26 3t6q_A CD180 antigen; protein- 99.8 2E-19 6.9E-24 174.8 12.0 233 72-316 274-534 (606)
27 1o6v_A Internalin A; bacterial 99.8 1E-18 3.5E-23 164.6 15.9 100 211-316 221-320 (466)
28 4fmz_A Internalin; leucine ric 99.8 3.5E-19 1.2E-23 161.2 11.8 228 71-316 83-322 (347)
29 4ecn_A Leucine-rich repeat pro 99.8 3.9E-19 1.4E-23 177.8 13.0 239 69-316 508-817 (876)
30 3v47_A TOLL-like receptor 5B a 99.8 3.4E-19 1.2E-23 167.1 11.7 104 211-316 275-382 (455)
31 4fmz_A Internalin; leucine ric 99.8 6.2E-19 2.1E-23 159.6 12.7 231 69-316 103-344 (347)
32 1o6v_A Internalin A; bacterial 99.8 1.5E-18 5.1E-23 163.5 13.9 228 72-316 86-364 (466)
33 3bz5_A Internalin-J, INLJ; leu 99.8 1.8E-18 6.2E-23 162.3 13.6 215 71-312 37-261 (457)
34 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 2.6E-18 9E-23 165.6 15.0 129 180-316 350-508 (562)
35 2z7x_B TOLL-like receptor 1, v 99.8 8.7E-19 3E-23 167.2 11.4 129 180-316 321-479 (520)
36 2z81_A CD282 antigen, TOLL-lik 99.8 9.9E-19 3.4E-23 167.9 11.3 62 70-131 44-107 (549)
37 1p9a_G Platelet glycoprotein I 99.8 1.4E-18 4.8E-23 153.5 10.5 194 73-316 7-206 (290)
38 3zyj_A Leucine-rich repeat-con 99.8 1.3E-18 4.5E-23 162.7 10.8 203 70-292 82-290 (440)
39 1ozn_A Reticulon 4 receptor; N 99.8 1.5E-18 5E-23 152.9 9.8 198 75-292 31-236 (285)
40 3t6q_A CD180 antigen; protein- 99.8 3.4E-18 1.2E-22 166.1 13.2 121 70-193 51-189 (606)
41 2ft3_A Biglycan; proteoglycan, 99.8 7.9E-19 2.7E-23 158.1 7.6 231 70-316 72-331 (332)
42 2z66_A Variable lymphocyte rec 99.8 7.1E-19 2.4E-23 156.5 7.1 214 80-316 11-234 (306)
43 1h6u_A Internalin H; cell adhe 99.8 2E-18 6.8E-23 153.8 9.7 198 71-299 36-234 (308)
44 2z7x_B TOLL-like receptor 1, v 99.8 1.4E-17 4.7E-22 158.9 15.9 107 70-193 39-148 (520)
45 1h6u_A Internalin H; cell adhe 99.7 2.3E-18 7.8E-23 153.4 9.6 143 72-242 59-202 (308)
46 3zyi_A Leucine-rich repeat-con 99.7 2.2E-18 7.5E-23 161.7 9.8 204 69-292 92-301 (452)
47 1xku_A Decorin; proteoglycan, 99.7 3.6E-18 1.2E-22 153.6 10.6 224 75-316 30-274 (330)
48 3vq2_A TLR4, TOLL-like recepto 99.7 1.5E-18 5E-23 168.7 8.5 199 96-316 347-556 (606)
49 2z62_A TOLL-like receptor 4, v 99.7 2.2E-18 7.4E-23 151.0 8.7 199 77-315 29-234 (276)
50 2z80_A TOLL-like receptor 2, v 99.7 2.2E-18 7.5E-23 156.5 8.9 220 76-316 52-288 (353)
51 3vq2_A TLR4, TOLL-like recepto 99.7 1.9E-18 6.6E-23 167.9 8.9 230 72-316 281-532 (606)
52 2xwt_C Thyrotropin receptor; s 99.7 1.3E-17 4.4E-22 143.0 11.9 203 87-316 23-237 (239)
53 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 3.1E-17 1.1E-21 158.0 15.3 106 70-193 70-179 (562)
54 3bz5_A Internalin-J, INLJ; leu 99.7 4E-17 1.4E-21 153.2 14.6 220 72-316 81-350 (457)
55 2o6q_A Variable lymphocyte rec 99.7 1.9E-17 6.6E-22 144.6 11.5 192 78-316 18-216 (270)
56 1wwl_A Monocyte differentiatio 99.7 6.9E-18 2.4E-22 150.6 8.8 213 78-316 65-307 (312)
57 1p9a_G Platelet glycoprotein I 99.7 8.8E-18 3E-22 148.3 9.1 170 76-267 31-205 (290)
58 2z63_A TOLL-like receptor 4, v 99.7 6.6E-18 2.3E-22 162.7 8.8 230 71-316 277-529 (570)
59 2z81_A CD282 antigen, TOLL-lik 99.7 7.7E-18 2.6E-22 161.7 9.2 149 76-241 26-178 (549)
60 3o53_A Protein LRIM1, AGAP0063 99.7 2.1E-18 7E-23 154.4 4.6 211 76-316 10-225 (317)
61 1wwl_A Monocyte differentiatio 99.7 9.1E-19 3.1E-23 156.3 1.9 216 73-316 40-285 (312)
62 1ziw_A TOLL-like receptor 3; i 99.7 1.1E-17 3.9E-22 164.6 9.4 61 71-131 44-106 (680)
63 1ziw_A TOLL-like receptor 3; i 99.7 3.6E-17 1.2E-21 161.0 12.7 238 70-316 67-364 (680)
64 2z62_A TOLL-like receptor 4, v 99.7 8.6E-18 3E-22 147.2 7.2 180 71-292 47-235 (276)
65 3rfs_A Internalin B, repeat mo 99.7 1.2E-17 4E-22 146.1 7.8 206 71-306 36-247 (272)
66 2z63_A TOLL-like receptor 4, v 99.7 1.1E-17 3.7E-22 161.3 8.0 222 71-316 47-336 (570)
67 3j0a_A TOLL-like receptor 5; m 99.7 5.6E-17 1.9E-21 163.4 13.4 158 69-242 41-211 (844)
68 3g06_A SSPH2 (leucine-rich rep 99.7 5.8E-17 2E-21 157.0 12.8 116 182-316 180-295 (622)
69 3j0a_A TOLL-like receptor 5; m 99.7 6.6E-17 2.3E-21 162.9 13.4 230 69-316 66-373 (844)
70 2o6q_A Variable lymphocyte rec 99.7 4.8E-17 1.6E-21 142.0 10.5 171 76-266 37-214 (270)
71 1jl5_A Outer protein YOPM; leu 99.7 1.7E-17 5.9E-22 155.5 7.8 218 69-315 27-267 (454)
72 2xwt_C Thyrotropin receptor; s 99.7 2.3E-17 7.8E-22 141.4 7.2 194 76-293 31-238 (239)
73 4g8a_A TOLL-like receptor 4; l 99.7 2.1E-16 7.1E-21 153.9 13.0 98 70-168 70-184 (635)
74 3oja_A Leucine-rich immune mol 99.7 5.6E-17 1.9E-21 153.5 5.8 198 88-316 20-225 (487)
75 1jl5_A Outer protein YOPM; leu 99.6 5.9E-16 2E-20 145.1 11.6 218 72-316 149-407 (454)
76 3rfs_A Internalin B, repeat mo 99.6 8.7E-16 3E-20 134.2 9.9 173 96-292 38-216 (272)
77 2ast_B S-phase kinase-associat 99.6 2E-17 6.7E-22 148.9 -0.9 199 76-291 70-282 (336)
78 2ast_B S-phase kinase-associat 99.6 1.7E-17 5.9E-22 149.3 -1.5 217 78-315 49-282 (336)
79 3g06_A SSPH2 (leucine-rich rep 99.6 3.1E-15 1E-19 145.0 13.2 205 76-316 61-272 (622)
80 2ca6_A RAN GTPase-activating p 99.6 2.2E-17 7.7E-22 151.6 -2.1 229 70-316 26-314 (386)
81 1h6t_A Internalin B; cell adhe 99.6 8.7E-16 3E-20 135.6 7.8 168 71-266 41-209 (291)
82 1h6t_A Internalin B; cell adhe 99.6 1.5E-15 5.1E-20 134.1 9.2 143 72-242 64-207 (291)
83 4ay9_X Follicle-stimulating ho 99.6 1.1E-15 3.6E-20 138.6 8.2 216 76-314 30-255 (350)
84 4glp_A Monocyte differentiatio 99.6 5.7E-16 1.9E-20 138.0 5.9 200 97-316 89-305 (310)
85 4ay9_X Follicle-stimulating ho 99.6 8.8E-15 3E-19 132.6 13.5 213 80-316 13-234 (350)
86 4ezg_A Putative uncharacterize 99.6 4.5E-15 1.6E-19 123.2 9.7 147 73-242 41-188 (197)
87 4glp_A Monocyte differentiatio 99.6 4E-16 1.4E-20 139.0 3.1 197 76-292 91-305 (310)
88 1m9s_A Internalin B; cell inva 99.6 3.3E-15 1.1E-19 144.5 7.6 169 71-267 38-207 (605)
89 1m9s_A Internalin B; cell inva 99.6 6.5E-15 2.2E-19 142.4 9.2 146 69-242 58-204 (605)
90 3m19_A Variable lymphocyte rec 99.5 1E-14 3.6E-19 125.7 9.1 141 79-242 17-162 (251)
91 4ezg_A Putative uncharacterize 99.5 5.4E-15 1.9E-19 122.8 6.4 150 119-316 41-192 (197)
92 2ca6_A RAN GTPase-activating p 99.5 5.1E-16 1.8E-20 142.5 -0.3 226 76-316 9-285 (386)
93 3m19_A Variable lymphocyte rec 99.5 1.8E-14 6E-19 124.3 9.4 123 99-242 14-138 (251)
94 3goz_A Leucine-rich repeat-con 99.5 2.9E-16 9.9E-21 143.0 -4.3 228 73-316 19-295 (362)
95 2o6s_A Variable lymphocyte rec 99.5 2.2E-14 7.4E-19 120.1 6.8 135 85-242 17-155 (208)
96 1dce_A Protein (RAB geranylger 99.5 1.9E-16 6.4E-21 152.2 -7.1 201 96-311 346-566 (567)
97 3cvr_A Invasion plasmid antige 99.5 3.1E-14 1E-18 136.4 8.2 182 77-301 60-250 (571)
98 1xeu_A Internalin C; cellular 99.5 1E-13 3.5E-18 120.4 9.9 146 70-244 35-181 (263)
99 1xeu_A Internalin C; cellular 99.5 2E-14 6.7E-19 125.0 4.4 164 75-267 18-182 (263)
100 3cvr_A Invasion plasmid antige 99.5 5.9E-14 2E-18 134.5 6.8 174 100-316 60-241 (571)
101 1z7x_W Ribonuclease inhibitor; 99.5 1.3E-15 4.4E-20 142.9 -4.7 238 71-316 108-409 (461)
102 3e6j_A Variable lymphocyte rec 99.4 2.6E-13 8.8E-18 115.4 8.4 140 80-242 23-166 (229)
103 1z7x_W Ribonuclease inhibitor; 99.4 2.7E-15 9.3E-20 140.7 -4.3 228 71-316 51-324 (461)
104 2v9t_B SLIT homolog 2 protein 99.4 2.5E-13 8.5E-18 114.7 7.4 140 80-242 15-159 (220)
105 2o6s_A Variable lymphocyte rec 99.4 1.6E-13 5.6E-18 114.7 6.2 176 102-306 10-190 (208)
106 3goz_A Leucine-rich repeat-con 99.4 2.7E-14 9.3E-19 129.9 1.1 214 85-316 8-264 (362)
107 3ogk_B Coronatine-insensitive 99.4 1.4E-13 4.9E-18 133.0 6.2 162 73-242 189-410 (592)
108 3e6j_A Variable lymphocyte rec 99.4 4E-13 1.4E-17 114.2 6.6 132 76-227 40-175 (229)
109 2v9t_B SLIT homolog 2 protein 99.4 3.6E-13 1.2E-17 113.7 6.3 132 76-226 32-167 (220)
110 2v70_A SLIT-2, SLIT homolog 2 99.4 6.2E-13 2.1E-17 112.3 7.4 141 79-242 14-160 (220)
111 4g8a_A TOLL-like receptor 4; l 99.4 1E-12 3.5E-17 127.8 8.7 200 96-316 368-578 (635)
112 3ogk_B Coronatine-insensitive 99.3 2.1E-13 7.2E-18 131.9 3.0 223 74-316 268-524 (592)
113 2xot_A Amphoterin-induced prot 99.3 3.4E-13 1.2E-17 122.6 3.5 148 76-242 39-196 (361)
114 2v70_A SLIT-2, SLIT homolog 2 99.3 1E-12 3.5E-17 110.9 5.5 131 77-226 33-168 (220)
115 2ell_A Acidic leucine-rich nuc 99.3 1.5E-12 5.1E-17 105.0 5.1 126 96-242 21-154 (168)
116 2xot_A Amphoterin-induced prot 99.3 1.6E-12 5.4E-17 118.2 4.2 165 79-266 21-198 (361)
117 2je0_A Acidic leucine-rich nuc 99.3 6.8E-13 2.3E-17 104.8 1.3 81 153-241 60-146 (149)
118 2wfh_A SLIT homolog 2 protein 99.2 7E-12 2.4E-16 103.6 6.5 122 79-223 13-138 (193)
119 2ell_A Acidic leucine-rich nuc 99.2 1.4E-11 4.9E-16 99.1 6.6 128 179-316 20-158 (168)
120 2je0_A Acidic leucine-rich nuc 99.2 6.1E-12 2.1E-16 99.2 3.7 123 75-219 16-148 (149)
121 1ds9_A Outer arm dynein; leuci 99.2 2.5E-13 8.5E-18 112.8 -5.0 132 86-241 36-180 (198)
122 1w8a_A SLIT protein; signaling 99.2 1.3E-11 4.6E-16 101.7 5.5 124 79-225 11-140 (192)
123 1a9n_A U2A', U2A'; complex (nu 99.2 6.9E-12 2.4E-16 101.9 2.7 128 72-222 15-151 (176)
124 2p1m_B Transport inhibitor res 99.2 2.4E-12 8.3E-17 124.4 -0.4 226 74-316 209-517 (594)
125 4b8c_D Glucose-repressible alc 99.2 1.9E-12 6.4E-17 128.1 -1.8 109 69-193 217-326 (727)
126 2p1m_B Transport inhibitor res 99.2 7.3E-12 2.5E-16 121.0 2.2 216 90-316 281-542 (594)
127 1dce_A Protein (RAB geranylger 99.1 3.2E-11 1.1E-15 115.8 6.6 148 71-242 404-567 (567)
128 4b8c_D Glucose-repressible alc 99.1 1.9E-11 6.4E-16 120.9 2.9 117 90-227 215-332 (727)
129 1w8a_A SLIT protein; signaling 99.1 6.1E-11 2.1E-15 97.8 4.5 120 102-242 11-133 (192)
130 2o6r_A Variable lymphocyte rec 99.1 1.7E-10 5.8E-15 93.6 7.0 123 79-224 10-137 (177)
131 1a9n_A U2A', U2A'; complex (nu 99.1 3.8E-11 1.3E-15 97.5 3.0 130 179-317 15-152 (176)
132 2wfh_A SLIT homolog 2 protein 99.1 1.5E-10 5E-15 95.5 6.2 118 102-242 13-133 (193)
133 1ds9_A Outer arm dynein; leuci 99.0 9.5E-12 3.3E-16 103.1 -3.9 129 71-223 43-184 (198)
134 2o6r_A Variable lymphocyte rec 99.0 7.6E-10 2.6E-14 89.7 7.1 120 101-242 9-131 (177)
135 4fdw_A Leucine rich hypothetic 98.9 2.1E-08 7.1E-13 92.1 15.1 219 77-326 158-388 (401)
136 3sb4_A Hypothetical leucine ri 98.9 6.2E-09 2.1E-13 93.1 10.9 220 75-311 100-327 (329)
137 2r9u_A Variable lymphocyte rec 98.8 3E-09 1E-13 86.1 4.8 50 79-131 15-66 (174)
138 3g39_A Variable lymphocyte rec 98.8 3.4E-09 1.1E-13 85.4 4.8 50 79-131 12-63 (170)
139 2r9u_A Variable lymphocyte rec 98.8 3.9E-09 1.3E-13 85.4 5.2 62 153-223 53-117 (174)
140 3g39_A Variable lymphocyte rec 98.8 4.8E-09 1.6E-13 84.5 4.5 56 76-131 30-87 (170)
141 2ra8_A Uncharacterized protein 98.7 3.7E-09 1.3E-13 95.6 2.0 132 177-316 166-318 (362)
142 4fdw_A Leucine rich hypothetic 98.5 7.8E-07 2.7E-11 81.6 12.6 209 77-316 136-356 (401)
143 2ifg_A High affinity nerve gro 98.5 9.7E-08 3.3E-12 85.8 5.1 97 81-193 13-113 (347)
144 2ifg_A High affinity nerve gro 98.4 1.3E-07 4.5E-12 84.9 4.2 85 72-168 27-114 (347)
145 3un9_A NLR family member X1; l 98.4 2.9E-08 1E-12 90.2 -1.3 151 76-242 72-246 (372)
146 3sb4_A Hypothetical leucine ri 98.4 1.1E-06 3.8E-11 78.3 8.9 197 70-287 118-327 (329)
147 2ra8_A Uncharacterized protein 98.1 1.6E-06 5.6E-11 78.2 3.9 58 255-316 277-341 (362)
148 3un9_A NLR family member X1; l 98.1 2.9E-07 1E-11 83.6 -1.7 144 75-232 100-260 (372)
149 3e4g_A ATP synthase subunit S, 98.0 2.9E-06 9.8E-11 68.0 2.5 83 212-316 62-150 (176)
150 4fs7_A Uncharacterized protein 97.9 3.9E-05 1.3E-09 70.0 9.0 144 155-316 228-377 (394)
151 4fs7_A Uncharacterized protein 97.9 7.4E-05 2.5E-09 68.2 10.7 231 70-314 65-352 (394)
152 3e4g_A ATP synthase subunit S, 97.7 5.6E-05 1.9E-09 60.5 5.8 42 89-131 52-94 (176)
153 1io0_A Tropomodulin; LRR prote 97.6 1.4E-05 4.8E-10 64.9 0.8 37 154-190 90-128 (185)
154 1io0_A Tropomodulin; LRR prote 97.4 3.7E-05 1.3E-09 62.4 1.6 114 71-193 31-161 (185)
155 3rw6_A Nuclear RNA export fact 97.4 0.00011 3.7E-09 63.2 4.5 81 96-189 167-257 (267)
156 4gt6_A Cell surface protein; l 97.4 0.0027 9.3E-08 57.7 13.4 101 211-316 265-368 (394)
157 4h09_A Hypothetical leucine ri 97.0 0.0045 1.5E-07 55.8 10.4 102 207-313 237-341 (379)
158 3rw6_A Nuclear RNA export fact 96.9 9.6E-05 3.3E-09 63.4 -1.4 13 211-223 196-208 (267)
159 2a5y_B CED-4; apoptosis; HET: 96.4 0.0012 4E-08 63.0 2.8 54 3-60 407-467 (549)
160 4gt6_A Cell surface protein; l 96.1 0.0081 2.8E-07 54.5 6.3 44 87-130 253-296 (394)
161 4h09_A Hypothetical leucine ri 95.2 0.046 1.6E-06 49.1 7.5 102 153-265 236-341 (379)
162 3rfe_A Platelet glycoprotein I 94.0 0.062 2.1E-06 40.4 4.5 43 86-131 19-64 (130)
163 3rfe_A Platelet glycoprotein I 92.5 0.09 3.1E-06 39.5 3.4 36 76-111 31-67 (130)
164 1pgv_A TMD-1, tropomodulin TMD 88.0 0.22 7.7E-06 40.2 2.1 109 75-192 40-166 (197)
165 1pgv_A TMD-1, tropomodulin TMD 86.4 0.39 1.3E-05 38.8 2.8 89 96-192 38-135 (197)
166 1vt4_I APAF-1 related killer D 60.7 5.7 0.00019 40.7 3.5 29 2-36 392-420 (1221)
167 3sfz_A APAF-1, apoptotic pepti 42.0 17 0.00059 37.5 3.8 44 2-55 400-443 (1249)
168 2lz0_A Uncharacterized protein 34.7 23 0.00077 24.7 2.3 45 86-131 7-52 (100)
169 2lz0_A Uncharacterized protein 32.0 38 0.0013 23.5 3.1 40 70-109 14-53 (100)
170 1uhw_A Pleckstrin; three-helix 24.4 42 0.0014 23.9 2.2 35 2-38 43-77 (109)
171 2cso_A Pleckstrin; DEP domain, 20.6 54 0.0018 24.0 2.2 34 2-37 53-86 (127)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=4e-25 Score=198.98 Aligned_cols=220 Identities=21% Similarity=0.192 Sum_probs=188.3
Q ss_pred cceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhh
Q 044597 75 EVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEIL 153 (341)
Q Consensus 75 l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l 153 (341)
..+++.|+++ +.+..+|..+ +++++|++|++++|.+..+|..++++++|++|+++++.+. .. +.. +
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l-~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~----------~l-p~~-l 146 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQA-FRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR----------AL-PAS-I 146 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCG-GGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC----------CC-CGG-G
T ss_pred ccceeEEEccCCCchhcChhh-hhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc----------cC-cHH-H
Confidence 4678899998 5889999999 8899999999999999999999999999999999984443 33 455 9
Q ss_pred CCCCCCceEEEEeecchhhhHHHHHhc---------CCCCCCEEEEEeCCCCCCCCccCc-ccccccCCccEEEEEeecC
Q 044597 154 GRLPNLQNLRIWGDLSYYQSLLSKSLC---------RLSCLESLKLANESKMPRRSNTIL-AEYQFPPSLTHLSFSNIEL 223 (341)
Q Consensus 154 ~~l~~L~~L~l~~~~~~~~~~l~~~l~---------~l~~L~~L~l~~~~e~~~~l~~lp-~~~~lp~~L~~L~l~~~~l 223 (341)
+++++|++|++++|. ....+|..+. ++++|+.|++++| .++.+| ++..+ ++|++|++++|.+
T Consensus 147 ~~l~~L~~L~L~~n~--~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-----~l~~lp~~l~~l-~~L~~L~L~~N~l 218 (328)
T 4fcg_A 147 ASLNRLRELSIRACP--ELTELPEPLASTDASGEHQGLVNLQSLRLEWT-----GIRSLPASIANL-QNLKSLKIRNSPL 218 (328)
T ss_dssp GGCTTCCEEEEEEET--TCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-----CCCCCCGGGGGC-TTCCEEEEESSCC
T ss_pred hcCcCCCEEECCCCC--CccccChhHhhccchhhhccCCCCCEEECcCC-----CcCcchHhhcCC-CCCCEEEccCCCC
Confidence 999999999999986 4455555554 4999999999999 888999 89999 9999999999998
Q ss_pred CCCCCccCcCCCCCCeEEEEE--eCcEeeecCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCcccccc
Q 044597 224 IDDPMPALEKLPVLQVLKLKY--LGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQL 301 (341)
Q Consensus 224 ~~~~~~~l~~l~~L~~L~l~~--~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l 301 (341)
+. .++.++.+++|++|+++. .....+...+.+++|++|++++++....++...+.+++|+.|++++|+..+.+|.++
T Consensus 219 ~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l 297 (328)
T 4fcg_A 219 SA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297 (328)
T ss_dssp CC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred Cc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH
Confidence 64 445689999999999932 223344556789999999999998888898888899999999999999999999999
Q ss_pred CCCCCCcEEEEecCC
Q 044597 302 WCLKSLNKLELWWPE 316 (341)
Q Consensus 302 ~~l~~L~~L~l~~~~ 316 (341)
+++++|+.+.+....
T Consensus 298 ~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 298 AQLPANCIILVPPHL 312 (328)
T ss_dssp GGSCTTCEEECCGGG
T ss_pred hhccCceEEeCCHHH
Confidence 999999999887543
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=2.7e-22 Score=180.53 Aligned_cols=199 Identities=19% Similarity=0.236 Sum_probs=170.4
Q ss_pred cCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEEEeecchhhhHHH
Q 044597 97 SLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLLS 176 (341)
Q Consensus 97 ~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~ 176 (341)
...++++|++++|.+..+|..++++++|++|+++++.+. .. +.. ++++++|++|++++|. ...+|
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~----------~l-p~~-~~~l~~L~~L~Ls~n~---l~~lp 143 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM----------EL-PDT-MQQFAGLETLTLARNP---LRALP 143 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC----------CC-CSC-GGGGTTCSEEEEESCC---CCCCC
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc----------ch-hHH-HhccCCCCEEECCCCc---cccCc
Confidence 458899999999999999999999999999999984443 33 445 8899999999999995 44778
Q ss_pred HHhcCCCCCCEEEEEeCCCCCCCCccCc-cccc---------ccCCccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeC
Q 044597 177 KSLCRLSCLESLKLANESKMPRRSNTIL-AEYQ---------FPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLG 246 (341)
Q Consensus 177 ~~l~~l~~L~~L~l~~~~e~~~~l~~lp-~~~~---------lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 246 (341)
..++.+++|+.|++++|. ..+.+| .+.. + ++|++|++++|.++ ..+..++.+++|++|+++.+.
T Consensus 144 ~~l~~l~~L~~L~L~~n~----~~~~~p~~~~~~~~~~~~~~l-~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~ 217 (328)
T 4fcg_A 144 ASIASLNRLRELSIRACP----ELTELPEPLASTDASGEHQGL-VNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSP 217 (328)
T ss_dssp GGGGGCTTCCEEEEEEET----TCCCCCSCSEEEC-CCCEEES-TTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSC
T ss_pred HHHhcCcCCCEEECCCCC----CccccChhHhhccchhhhccC-CCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCC
Confidence 889999999999999976 777788 6544 8 99999999999986 444569999999999994333
Q ss_pred -cEeeecCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCccccccCCCCCCcEEEEecCC
Q 044597 247 -RKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLELWWPE 316 (341)
Q Consensus 247 -~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 316 (341)
..++.....+++|++|+++++.....++...+.+++|++|++++|...+.+|..+.++++|++|++++|+
T Consensus 218 l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 218 LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288 (328)
T ss_dssp CCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCT
T ss_pred CCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCC
Confidence 2333445678999999999988888888888899999999999999999999999999999999999987
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.85 E-value=3.9e-22 Score=199.06 Aligned_cols=254 Identities=18% Similarity=0.151 Sum_probs=151.7
Q ss_pred cceeeeeccC-CCCc-ccChhhhhcCCCccEEecCCcccc-ccchhhcccccCceeeecCc----CCCCCC------ceE
Q 044597 75 EVRLRENSII-PSLK-SLPSSFLSSLLNLYTLEMPFSYID-HTADEFWKMSKLRYLNFGAI----TLPAHP------GKY 141 (341)
Q Consensus 75 l~~Lr~L~l~-~~~~-~lp~~if~~L~~L~~L~Ls~~~~~-~lp~~i~~L~~L~~L~l~~~----~lp~~i------~~~ 141 (341)
+.+|++|++. +.+. .+|..+ +++++|++|++++|.+. .+|..++.+++|++|+++++ .+|..+ +.+
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 471 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTL-SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL 471 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGG-GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred cCCccEEECCCCccccccCHHH-hcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEE
Confidence 5667777776 3444 566666 77777777777777554 56777777777777777762 222222 334
Q ss_pred EeCC-----CcchhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCc-cCc-ccccccCCcc
Q 044597 142 SLHP-----CCSTEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSN-TIL-AEYQFPPSLT 214 (341)
Q Consensus 142 ~~~~-----~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~-~lp-~~~~lp~~L~ 214 (341)
.+++ .. +.. ++++++|++|++++|. ....+|..++.+++|+.|++++| .+. .+| .+..+ ++|+
T Consensus 472 ~L~~N~l~~~~-p~~-l~~l~~L~~L~L~~N~--l~~~~p~~~~~l~~L~~L~L~~N-----~l~~~~p~~l~~l-~~L~ 541 (768)
T 3rgz_A 472 ILDFNDLTGEI-PSG-LSNCTNLNWISLSNNR--LTGEIPKWIGRLENLAILKLSNN-----SFSGNIPAELGDC-RSLI 541 (768)
T ss_dssp ECCSSCCCSCC-CGG-GGGCTTCCEEECCSSC--CCSCCCGGGGGCTTCCEEECCSS-----CCEEECCGGGGGC-TTCC
T ss_pred EecCCcccCcC-CHH-HhcCCCCCEEEccCCc--cCCcCChHHhcCCCCCEEECCCC-----cccCcCCHHHcCC-CCCC
Confidence 4332 22 334 6667777777777665 33355566667777777777776 443 456 66667 6777
Q ss_pred EEEEEeecCCCCCCc-----------------------------------------------------------------
Q 044597 215 HLSFSNIELIDDPMP----------------------------------------------------------------- 229 (341)
Q Consensus 215 ~L~l~~~~l~~~~~~----------------------------------------------------------------- 229 (341)
.|++++|.+.+..+.
T Consensus 542 ~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~ 621 (768)
T 3rgz_A 542 WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 621 (768)
T ss_dssp EEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEE
T ss_pred EEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceec
Confidence 777776654322111
Q ss_pred -----cCcCCCCCCeEEEEEeC--cEeeecCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCccccccC
Q 044597 230 -----ALEKLPVLQVLKLKYLG--RKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLW 302 (341)
Q Consensus 230 -----~l~~l~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~ 302 (341)
.++.+++|++|+++.+. ..++...+.+++|+.|+++++.--..+|...+.+++|+.|++++|..-+.+|..+.
T Consensus 622 g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~ 701 (768)
T 3rgz_A 622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 701 (768)
T ss_dssp EECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGG
T ss_pred ccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHh
Confidence 23345566666663222 12334455677888888887554446777777888888888888885557888888
Q ss_pred CCCCCcEEEEecCCh---------------------------HHHHHhhhccccccccccccccC
Q 044597 303 CLKSLNKLELWWPEP---------------------------KLRQQLWEFEDKEQYGIQLYPYG 340 (341)
Q Consensus 303 ~l~~L~~L~l~~~~~---------------------------~~~~~~~~~~~~~~~~i~~ip~~ 340 (341)
++++|++|++++|+= -+ ..|....+++|++|+|+|.+
T Consensus 702 ~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l-~~C~~~~~~~~~~~~~~~~~ 765 (768)
T 3rgz_A 702 ALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL-PRCDPSNADGYAHHQRSHHH 765 (768)
T ss_dssp GCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTS-CCCCSCC-------------
T ss_pred CCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCC-cCCCCCccCCCCCCCCcccc
Confidence 888899988887630 11 14677778999999999875
No 4
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.85 E-value=1.1e-22 Score=181.99 Aligned_cols=219 Identities=18% Similarity=0.169 Sum_probs=95.9
Q ss_pred eeeeeccC-CCCc---ccChhhhhcCCCccEEecCC-cccc-ccchhhcccccCceeeecCcCCCCCCceEEeCCCcchh
Q 044597 77 RLRENSII-PSLK---SLPSSFLSSLLNLYTLEMPF-SYID-HTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTE 150 (341)
Q Consensus 77 ~Lr~L~l~-~~~~---~lp~~if~~L~~L~~L~Ls~-~~~~-~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~ 150 (341)
+++.|+++ +.+. .+|..+ +++++|++|++++ |.+. .+|..++++++|++|+++++.+. +.. +.
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l-~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~---------~~~-p~ 119 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS---------GAI-PD 119 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCE---------EEC-CG
T ss_pred eEEEEECCCCCccCCcccChhH-hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeC---------CcC-CH
Confidence 44555554 2333 355555 5555555555553 4332 44555555555555555542221 011 22
Q ss_pred hhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCc-cCc-ccccccCCccEEEEEeecCCCCCC
Q 044597 151 EILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSN-TIL-AEYQFPPSLTHLSFSNIELIDDPM 228 (341)
Q Consensus 151 ~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~-~lp-~~~~lp~~L~~L~l~~~~l~~~~~ 228 (341)
. ++++++|++|+++++. ....+|..+..+++|+.|++++| .+. .+| .+..++++|+.|++++|.+....+
T Consensus 120 ~-~~~l~~L~~L~Ls~N~--l~~~~p~~~~~l~~L~~L~L~~N-----~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~ 191 (313)
T 1ogq_A 120 F-LSQIKTLVTLDFSYNA--LSGTLPPSISSLPNLVGITFDGN-----RISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191 (313)
T ss_dssp G-GGGCTTCCEEECCSSE--EESCCCGGGGGCTTCCEEECCSS-----CCEEECCGGGGCCCTTCCEEECCSSEEEEECC
T ss_pred H-HhCCCCCCEEeCCCCc--cCCcCChHHhcCCCCCeEECcCC-----cccCcCCHHHhhhhhcCcEEECcCCeeeccCC
Confidence 2 4455555555555443 11233444445555555555554 333 344 444441255555555555433333
Q ss_pred ccCcCCCCCCeEEEEEeC--cEeeecCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCccccccCCCCC
Q 044597 229 PALEKLPVLQVLKLKYLG--RKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKS 306 (341)
Q Consensus 229 ~~l~~l~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~ 306 (341)
..++.++ |++|+++.+. ...+.....+++|++|+++++. +.......+.+++|++|++++|..-+.+|..+..+++
T Consensus 192 ~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 269 (313)
T 1ogq_A 192 PTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS-LAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269 (313)
T ss_dssp GGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE-ECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTT
T ss_pred hHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCc-eeeecCcccccCCCCEEECcCCcccCcCChHHhcCcC
Confidence 3444443 5555541111 0111223344555555554422 2222222334455555555555422234444444555
Q ss_pred CcEEEEecCC
Q 044597 307 LNKLELWWPE 316 (341)
Q Consensus 307 L~~L~l~~~~ 316 (341)
|++|++++|.
T Consensus 270 L~~L~Ls~N~ 279 (313)
T 1ogq_A 270 LHSLNVSFNN 279 (313)
T ss_dssp CCEEECCSSE
T ss_pred CCEEECcCCc
Confidence 5555555443
No 5
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.85 E-value=2.5e-21 Score=178.31 Aligned_cols=109 Identities=15% Similarity=0.182 Sum_probs=68.4
Q ss_pred cCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccch-hhcccccCceeeecCcCCCCCCceEEeCCCcch
Q 044597 72 MDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTAD-EFWKMSKLRYLNFGAITLPAHPGKYSLHPCCST 149 (341)
Q Consensus 72 ~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~-~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~ 149 (341)
+..+++|++|++. +.+..+|...|+.+++|++|++++|.+..+|. .++.+++|++|+++++.+. .. +
T Consensus 65 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~----------~l-~ 133 (390)
T 3o6n_A 65 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS----------SL-P 133 (390)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC----------CC-C
T ss_pred hcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC----------cC-C
Confidence 4445666666665 35566555333666666666666666665543 3566666666666663322 22 3
Q ss_pred hhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeC
Q 044597 150 EEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANE 193 (341)
Q Consensus 150 ~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~ 193 (341)
...++++++|++|+++++.. ....+..++.+++|+.|+++++
T Consensus 134 ~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~l~~n 175 (390)
T 3o6n_A 134 RGIFHNTPKLTTLSMSNNNL--ERIEDDTFQATTSLQNLQLSSN 175 (390)
T ss_dssp TTTTTTCTTCCEEECCSSCC--CBCCTTTTSSCTTCCEEECCSS
T ss_pred HHHhcCCCCCcEEECCCCcc--CccChhhccCCCCCCEEECCCC
Confidence 33257889999999988852 2222345788899999999886
No 6
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.84 E-value=7.6e-21 Score=175.04 Aligned_cols=220 Identities=18% Similarity=0.167 Sum_probs=144.6
Q ss_pred ccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhh-cccccCceeeecCcCCCCCCceEEeCCCcc
Q 044597 71 IMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEF-WKMSKLRYLNFGAITLPAHPGKYSLHPCCS 148 (341)
Q Consensus 71 ~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i-~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~ 148 (341)
.+..+.+|++|+++ +.+..+|...|+++++|++|++++|.+..+|..+ ..+++|++|+++++.+. ...
T Consensus 88 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~----------~~~ 157 (390)
T 3o6n_A 88 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE----------RIE 157 (390)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC----------BCC
T ss_pred hccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccC----------ccC
Confidence 67778888888887 5777777665588888888888888888888764 78888888888873332 110
Q ss_pred hhhhhCCCCCCceEEEEeecchhhhHHHHHhcCC----------------------------------------CCCCEE
Q 044597 149 TEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRL----------------------------------------SCLESL 188 (341)
Q Consensus 149 ~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l----------------------------------------~~L~~L 188 (341)
+.. ++.+++|++|+++++..... .++.+ ++|+.|
T Consensus 158 ~~~-~~~l~~L~~L~l~~n~l~~~-----~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L 231 (390)
T 3o6n_A 158 DDT-FQATTSLQNLQLSSNRLTHV-----DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTIL 231 (390)
T ss_dssp TTT-TSSCTTCCEEECCSSCCSBC-----CGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEE
T ss_pred hhh-ccCCCCCCEEECCCCcCCcc-----ccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEE
Confidence 222 55555555555555431111 11122 344445
Q ss_pred EEEeCCCCCCCCccCcccccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEEEEe-CcEeeecCCCCCcccEEEEecC
Q 044597 189 KLANESKMPRRSNTILAEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYL-GRKLACSSDGFPKLKVLHLKSM 267 (341)
Q Consensus 189 ~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~L~~L~l~~~ 267 (341)
+++++ .+...+++..+ ++|++|++++|.+.......++.+++|++|+++.+ -..++.....+++|++|+++++
T Consensus 232 ~l~~n-----~l~~~~~l~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n 305 (390)
T 3o6n_A 232 KLQHN-----NLTDTAWLLNY-PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN 305 (390)
T ss_dssp ECCSS-----CCCCCGGGGGC-TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSS
T ss_pred ECCCC-----CCcccHHHcCC-CCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCC
Confidence 55444 44444455666 77777777777765555566777777888777222 2333444456778888888874
Q ss_pred CCCCceeecCCCCCcccEEEEecCCCCCccccccCCCCCCcEEEEecCC
Q 044597 268 LWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLELWWPE 316 (341)
Q Consensus 268 ~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 316 (341)
.+..++...+.+++|+.|++.+|+ +..+| +..+++|+.|++++|+
T Consensus 306 -~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 306 -HLLHVERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp -CCCCCGGGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSC
T ss_pred -cceecCccccccCcCCEEECCCCc-cceeC--chhhccCCEEEcCCCC
Confidence 466666555667888888888887 66665 5678888888888887
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.84 E-value=1.3e-20 Score=177.94 Aligned_cols=225 Identities=16% Similarity=0.134 Sum_probs=149.9
Q ss_pred ccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchh-hcccccCceeeecCcCCCCCCceEEeCCCcc
Q 044597 71 IMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADE-FWKMSKLRYLNFGAITLPAHPGKYSLHPCCS 148 (341)
Q Consensus 71 ~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~-i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~ 148 (341)
.+..+.+|++|+++ +.+..++...|+++++|++|+|++|.+..+|.. +.++++|++|+++++.+. ...
T Consensus 51 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~----------~~~ 120 (477)
T 2id5_A 51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV----------ILL 120 (477)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCC----------EEC
T ss_pred HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccc----------cCC
Confidence 45556666666665 355555332236666666666666666666543 466666666666653332 110
Q ss_pred hhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCC
Q 044597 149 TEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDD 226 (341)
Q Consensus 149 ~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~ 226 (341)
+.. +..+++|++|+++++.. ....+..+..+++|+.|++++| .++.+| .+..+ ++|+.|++++|.+...
T Consensus 121 ~~~-~~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n-----~l~~~~~~~l~~l-~~L~~L~l~~n~i~~~ 191 (477)
T 2id5_A 121 DYM-FQDLYNLKSLEVGDNDL--VYISHRAFSGLNSLEQLTLEKC-----NLTSIPTEALSHL-HGLIVLRLRHLNINAI 191 (477)
T ss_dssp TTT-TTTCTTCCEEEECCTTC--CEECTTSSTTCTTCCEEEEESC-----CCSSCCHHHHTTC-TTCCEEEEESCCCCEE
T ss_pred hhH-ccccccCCEEECCCCcc--ceeChhhccCCCCCCEEECCCC-----cCcccChhHhccc-CCCcEEeCCCCcCcEe
Confidence 233 77888888888887752 1222345778888888888887 777777 57778 8888888888887665
Q ss_pred CCccCcCCCCCCeEEEEEeC--cEeeecCCCCCcccEEEEecCCCCCceee-cCCCCCcccEEEEecCCCCCccc-cccC
Q 044597 227 PMPALEKLPVLQVLKLKYLG--RKLACSSDGFPKLKVLHLKSMLWLEEWTM-GIKAMPKLECVIINPCAHLKRIP-EQLW 302 (341)
Q Consensus 227 ~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~c~~l~~lp-~~l~ 302 (341)
....+..+++|+.|+++.+. ...+.......+|++|+++++ .+..++. ..+.+++|+.|++++|. +..++ ..+.
T Consensus 192 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~ 269 (477)
T 2id5_A 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSMLH 269 (477)
T ss_dssp CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSSC-CCEECTTSCT
T ss_pred ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCC-cccccCHHHhcCccccCeeECCCCc-CCccChhhcc
Confidence 66678888888888883322 222222334458888888884 4666652 34578899999999988 66654 4567
Q ss_pred CCCCCcEEEEecCC
Q 044597 303 CLKSLNKLELWWPE 316 (341)
Q Consensus 303 ~l~~L~~L~l~~~~ 316 (341)
++++|++|++++|.
T Consensus 270 ~l~~L~~L~L~~n~ 283 (477)
T 2id5_A 270 ELLRLQEIQLVGGQ 283 (477)
T ss_dssp TCTTCCEEECCSSC
T ss_pred ccccCCEEECCCCc
Confidence 88999999999885
No 8
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.84 E-value=1.2e-21 Score=175.17 Aligned_cols=228 Identities=16% Similarity=0.117 Sum_probs=184.6
Q ss_pred ccccccCCcceeeeeccC--CCCc-ccChhhhhcCCCccEEecCCcccc-ccchhhcccccCceeeecCcCCCCCCceEE
Q 044597 67 IISPIMDQEVRLRENSII--PSLK-SLPSSFLSSLLNLYTLEMPFSYID-HTADEFWKMSKLRYLNFGAITLPAHPGKYS 142 (341)
Q Consensus 67 ~~~~~~~~l~~Lr~L~l~--~~~~-~lp~~if~~L~~L~~L~Ls~~~~~-~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~ 142 (341)
...+.+..+++|++|+++ +.+. .+|..+ +++++|++|++++|.+. .+|..+.++++|++|+++++.+.
T Consensus 67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~------- 138 (313)
T 1ogq_A 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS------- 138 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEE-------
T ss_pred ccChhHhCCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccC-------
Confidence 345678889999999997 4665 688888 99999999999999887 78999999999999999983222
Q ss_pred eCCCcchhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCC-CCCEEEEEeCCCCCCCCc-cCc-ccccccCCccEEEEE
Q 044597 143 LHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLS-CLESLKLANESKMPRRSN-TIL-AEYQFPPSLTHLSFS 219 (341)
Q Consensus 143 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~-~L~~L~l~~~~e~~~~l~-~lp-~~~~lp~~L~~L~l~ 219 (341)
+.. +.. ++.+++|++|++++|. ....+|..+..++ +|+.|++++| .+. .+| .+..+ . |+.|+++
T Consensus 139 --~~~-p~~-~~~l~~L~~L~L~~N~--l~~~~p~~l~~l~~~L~~L~L~~N-----~l~~~~~~~~~~l-~-L~~L~Ls 205 (313)
T 1ogq_A 139 --GTL-PPS-ISSLPNLVGITFDGNR--ISGAIPDSYGSFSKLFTSMTISRN-----RLTGKIPPTFANL-N-LAFVDLS 205 (313)
T ss_dssp --SCC-CGG-GGGCTTCCEEECCSSC--CEEECCGGGGCCCTTCCEEECCSS-----EEEEECCGGGGGC-C-CSEEECC
T ss_pred --CcC-ChH-HhcCCCCCeEECcCCc--ccCcCCHHHhhhhhcCcEEECcCC-----eeeccCChHHhCC-c-ccEEECc
Confidence 123 455 8999999999999986 3336778888998 9999999998 666 577 78888 6 9999999
Q ss_pred eecCCCCCCccCcCCCCCCeEEEEEeC-cEeeecCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCccc
Q 044597 220 NIELIDDPMPALEKLPVLQVLKLKYLG-RKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIP 298 (341)
Q Consensus 220 ~~~l~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp 298 (341)
+|.+.......++.+++|+.|+++.+. .........+++|++|+++++.-...++...+.+++|+.|++++|..-+.+|
T Consensus 206 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip 285 (313)
T 1ogq_A 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285 (313)
T ss_dssp SSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred CCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC
Confidence 999877777789999999999993222 1122335678999999999855333667677789999999999998444677
Q ss_pred cccCCCCCCcEEEEecCC
Q 044597 299 EQLWCLKSLNKLELWWPE 316 (341)
Q Consensus 299 ~~l~~l~~L~~L~l~~~~ 316 (341)
.. .++++|+.+++.+|+
T Consensus 286 ~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 286 QG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CS-TTGGGSCGGGTCSSS
T ss_pred CC-ccccccChHHhcCCC
Confidence 65 789999999999988
No 9
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.83 E-value=2.7e-20 Score=167.45 Aligned_cols=230 Identities=17% Similarity=0.179 Sum_probs=172.0
Q ss_pred ceeeeeccC-CCCcccChhhhhcCCCccEEecCCcccccc-chhhcccccCceeeecC---cCCCCCC----ceEEeCC-
Q 044597 76 VRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHT-ADEFWKMSKLRYLNFGA---ITLPAHP----GKYSLHP- 145 (341)
Q Consensus 76 ~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~l-p~~i~~L~~L~~L~l~~---~~lp~~i----~~~~~~~- 145 (341)
..+++|+++ +.+..+|...|+++++|++|++++|.+..+ |..++.+++|++|++++ ..+|..+ +.+.+++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n 131 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHEN 131 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSS
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCC
Confidence 467778887 577777765448888888888888877776 67788888888888877 3444333 5566654
Q ss_pred ---CcchhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc-ccccccCCccEEEEEee
Q 044597 146 ---CCSTEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL-AEYQFPPSLTHLSFSNI 221 (341)
Q Consensus 146 ---~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp-~~~~lp~~L~~L~l~~~ 221 (341)
.. ++..++++++|++|+++++........+..+..+++|+.|+++++ .++.+| .+ . ++|++|++++|
T Consensus 132 ~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-----~l~~l~~~~--~-~~L~~L~l~~n 202 (330)
T 1xku_A 132 EITKV-RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-----NITTIPQGL--P-PSLTELHLDGN 202 (330)
T ss_dssp CCCBB-CHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-----CCCSCCSSC--C-TTCSEEECTTS
T ss_pred ccccc-CHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC-----ccccCCccc--c-ccCCEEECCCC
Confidence 23 333388999999999998864333345567888999999999988 788888 43 2 78999999999
Q ss_pred cCCCCCCccCcCCCCCCeEEEEEeCc-Eeee-cCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCcccc
Q 044597 222 ELIDDPMPALEKLPVLQVLKLKYLGR-KLAC-SSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPE 299 (341)
Q Consensus 222 ~l~~~~~~~l~~l~~L~~L~l~~~~~-~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~ 299 (341)
.++......++.+++|++|+++.+.. .... ....+++|++|+++++ .+..++.....+++|++|++.+|+ ++.+|.
T Consensus 203 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~ 280 (330)
T 1xku_A 203 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN-ISAIGS 280 (330)
T ss_dssp CCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC-CCCCCT
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCCc-CCccCh
Confidence 98766667889999999999943332 2221 3456889999999985 577888777889999999999998 777764
Q ss_pred ccC-------CCCCCcEEEEecCC
Q 044597 300 QLW-------CLKSLNKLELWWPE 316 (341)
Q Consensus 300 ~l~-------~l~~L~~L~l~~~~ 316 (341)
... ..++|+.|++.++|
T Consensus 281 ~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 281 NDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp TSSSCSSCCTTSCCCSEEECCSSS
T ss_pred hhcCCcccccccccccceEeecCc
Confidence 321 24788999999998
No 10
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=1.1e-20 Score=183.44 Aligned_cols=107 Identities=21% Similarity=0.198 Sum_probs=70.0
Q ss_pred ccccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEE-EEeCcEeeecCCCCCcccEEEEecCCCCCceeecCCCCCcc
Q 044597 205 AEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKL-KYLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKL 283 (341)
Q Consensus 205 ~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L 283 (341)
++..+ ++|+.|++++|.+....+..++.+++|+.|++ .+....++.....+++|++|+++++ .+..++...+.+++|
T Consensus 249 ~l~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L 326 (597)
T 3oja_B 249 WLLNY-PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRL 326 (597)
T ss_dssp GGGGC-TTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTC
T ss_pred hhccC-CCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCC-CCCccCcccccCCCC
Confidence 45556 66777777777665555556667777777777 2222333344455777777777764 455666555667777
Q ss_pred cEEEEecCCCCCccccccCCCCCCcEEEEecCC
Q 044597 284 ECVIINPCAHLKRIPEQLWCLKSLNKLELWWPE 316 (341)
Q Consensus 284 ~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 316 (341)
+.|++++|. +..+| +..+++|+.|++++|+
T Consensus 327 ~~L~L~~N~-l~~~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 327 ENLYLDHNS-IVTLK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp SEEECCSSC-CCCCC--CCTTCCCSEEECCSSC
T ss_pred CEEECCCCC-CCCcC--hhhcCCCCEEEeeCCC
Confidence 777777777 55554 5667888888888887
No 11
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=1.1e-20 Score=183.40 Aligned_cols=223 Identities=16% Similarity=0.154 Sum_probs=150.9
Q ss_pred cCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccch-hhcccccCceeeecCcCCCCCCceEEeCCCcch
Q 044597 72 MDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTAD-EFWKMSKLRYLNFGAITLPAHPGKYSLHPCCST 149 (341)
Q Consensus 72 ~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~-~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~ 149 (341)
+..+++|++|+++ +.+..+|...|+.+++|++|+|++|.+..+|. .++.+++|++|+++++.+. .. +
T Consensus 71 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~----------~l-~ 139 (597)
T 3oja_B 71 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS----------SL-P 139 (597)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC----------CC-C
T ss_pred HccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC----------CC-C
Confidence 4455667777776 45666655333777777777777776666654 3466777777777663332 22 3
Q ss_pred hhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc--cccc-------------------
Q 044597 150 EEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL--AEYQ------------------- 208 (341)
Q Consensus 150 ~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~------------------- 208 (341)
+..++++++|++|++++|. .....|..++.+++|+.|++++| .+..++ .+..
T Consensus 140 ~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~L~~N-----~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~ 212 (597)
T 3oja_B 140 RGIFHNTPKLTTLSMSNNN--LERIEDDTFQATTSLQNLQLSSN-----RLTHVDLSLIPSLFHANVSYNLLSTLAIPIA 212 (597)
T ss_dssp TTTTTTCTTCCEEECCSSC--CCBCCTTTTTTCTTCCEEECTTS-----CCSBCCGGGCTTCSEEECCSSCCSEEECCTT
T ss_pred HHHhccCCCCCEEEeeCCc--CCCCChhhhhcCCcCcEEECcCC-----CCCCcChhhhhhhhhhhcccCccccccCCch
Confidence 3326888889999988885 22233346788889999998887 444333 1110
Q ss_pred -----------------ccCCccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeC--cEeeecCCCCCcccEEEEecCCC
Q 044597 209 -----------------FPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLG--RKLACSSDGFPKLKVLHLKSMLW 269 (341)
Q Consensus 209 -----------------lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~l~~~~~ 269 (341)
.|++|+.|++++|.++. ++.++.+++|+.|+++.+. ...+...+.+++|++|++++ +.
T Consensus 213 L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~ 289 (597)
T 3oja_B 213 VEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN-NR 289 (597)
T ss_dssp CSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTT-SC
T ss_pred hheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCC-CC
Confidence 11346666666666533 3567888899999883333 22234456789999999998 46
Q ss_pred CCceeecCCCCCcccEEEEecCCCCCccccccCCCCCCcEEEEecCC
Q 044597 270 LEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLELWWPE 316 (341)
Q Consensus 270 l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 316 (341)
+..++...+.+++|+.|++++|. +..+|..+..+++|+.|++++|.
T Consensus 290 l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 290 LVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS 335 (597)
T ss_dssp CCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC
T ss_pred CCCCCcccccCCCCcEEECCCCC-CCccCcccccCCCCCEEECCCCC
Confidence 77888777789999999999998 77888888889999999999987
No 12
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.83 E-value=5.8e-21 Score=173.51 Aligned_cols=223 Identities=17% Similarity=0.212 Sum_probs=105.9
Q ss_pred cCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchh-hcccccCceeeecCcCCCCCCceEEeCCCcch
Q 044597 72 MDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADE-FWKMSKLRYLNFGAITLPAHPGKYSLHPCCST 149 (341)
Q Consensus 72 ~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~-i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~ 149 (341)
+..+++|++|+++ +.+..++...|+++++|++|++++|.+..+|.. ++.+++|++|+++++.+. .. +
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~----------~l-~ 140 (353)
T 2z80_A 72 LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK----------TL-G 140 (353)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS----------SS-C
T ss_pred hccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc----------cc-C
Confidence 3444444444444 234444332224444444444444444444433 444444444444442111 11 1
Q ss_pred h--hhhCCCCCCceEEEEeecchhhhHH-HHHhcCCCCCCEEEEEeCCCCCCCCccC-c-ccccccCCccEEEEEeecCC
Q 044597 150 E--EILGRLPNLQNLRIWGDLSYYQSLL-SKSLCRLSCLESLKLANESKMPRRSNTI-L-AEYQFPPSLTHLSFSNIELI 224 (341)
Q Consensus 150 ~--~~l~~l~~L~~L~l~~~~~~~~~~l-~~~l~~l~~L~~L~l~~~~e~~~~l~~l-p-~~~~lp~~L~~L~l~~~~l~ 224 (341)
. . ++.+++|++|+++++. ....+ +..++.+++|+.|++++| .+..+ | .+..+ ++|++|++++|.+.
T Consensus 141 ~~~~-~~~l~~L~~L~l~~n~--~~~~~~~~~~~~l~~L~~L~l~~n-----~l~~~~~~~l~~l-~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 141 ETSL-FSHLTKLQILRVGNMD--TFTKIQRKDFAGLTFLEELEIDAS-----DLQSYEPKSLKSI-QNVSHLILHMKQHI 211 (353)
T ss_dssp SSCS-CTTCTTCCEEEEEESS--SCCEECTTTTTTCCEEEEEEEEET-----TCCEECTTTTTTC-SEEEEEEEECSCST
T ss_pred chhh-hccCCCCcEEECCCCc--cccccCHHHccCCCCCCEEECCCC-----CcCccCHHHHhcc-ccCCeecCCCCccc
Confidence 1 2 4445555555555442 11111 223444555555555554 33333 3 44444 45555555555442
Q ss_pred CCCCccCcCCCCCCeEEEEEeC-cEee----ecCCCCCcccEEEEecCCCCC-----ceeecCCCCCcccEEEEecCCCC
Q 044597 225 DDPMPALEKLPVLQVLKLKYLG-RKLA----CSSDGFPKLKVLHLKSMLWLE-----EWTMGIKAMPKLECVIINPCAHL 294 (341)
Q Consensus 225 ~~~~~~l~~l~~L~~L~l~~~~-~~~~----~~~~~~~~L~~L~l~~~~~l~-----~~~~~~~~l~~L~~L~l~~c~~l 294 (341)
..+...++.+++|++|+++.+. .... ......+.++.++++++. +. .++...+.+++|+.|++++|. +
T Consensus 212 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~-l~~~~l~~l~~~l~~l~~L~~L~Ls~N~-l 289 (353)
T 2z80_A 212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK-ITDESLFQVMKLLNQISGLLELEFSRNQ-L 289 (353)
T ss_dssp THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCB-CCHHHHHHHHHHHHTCTTCCEEECCSSC-C
T ss_pred cchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccccc-ccCcchhhhHHHHhcccCCCEEECCCCC-C
Confidence 2221122334555555551111 0000 001123344444444421 11 123334568999999999997 8
Q ss_pred Ccccccc-CCCCCCcEEEEecCC
Q 044597 295 KRIPEQL-WCLKSLNKLELWWPE 316 (341)
Q Consensus 295 ~~lp~~l-~~l~~L~~L~l~~~~ 316 (341)
+.+|.++ .++++|++|++++|+
T Consensus 290 ~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 290 KSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCHHHHhcCCCCCEEEeeCCC
Confidence 8999875 789999999999987
No 13
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.82 E-value=4.7e-21 Score=171.56 Aligned_cols=214 Identities=20% Similarity=0.151 Sum_probs=173.2
Q ss_pred CCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhh
Q 044597 73 DQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEE 151 (341)
Q Consensus 73 ~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~ 151 (341)
..+.+|++|+++ +.+..++...|+++++|++|++++|.+..++. +..+++|++|++++ +. +..
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~--------------n~-l~~ 94 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNN--------------NY-VQE 94 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCS--------------SE-EEE
T ss_pred ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcC--------------Cc-ccc
Confidence 456789999998 58888876555999999999999998887765 99999999999998 33 444
Q ss_pred hhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCCCCc
Q 044597 152 ILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDDPMP 229 (341)
Q Consensus 152 ~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~~ 229 (341)
+...++|++|+++++.. ..++ ...+++|+.|++++| .++.++ .+..+ ++|++|++++|.+......
T Consensus 95 -l~~~~~L~~L~l~~n~l---~~~~--~~~~~~L~~L~l~~N-----~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~ 162 (317)
T 3o53_A 95 -LLVGPSIETLHAANNNI---SRVS--CSRGQGKKNIYLANN-----KITMLRDLDEGCR-SRVQYLDLKLNEIDTVNFA 162 (317)
T ss_dssp -EEECTTCCEEECCSSCC---SEEE--ECCCSSCEEEECCSS-----CCCSGGGBCTGGG-SSEEEEECTTSCCCEEEGG
T ss_pred -ccCCCCcCEEECCCCcc---CCcC--ccccCCCCEEECCCC-----CCCCccchhhhcc-CCCCEEECCCCCCCcccHH
Confidence 55668999999998852 2221 245789999999998 788875 77788 9999999999998665555
Q ss_pred cC-cCCCCCCeEEEEEeCcEeeecCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCccccccCCCCCCc
Q 044597 230 AL-EKLPVLQVLKLKYLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLN 308 (341)
Q Consensus 230 ~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~ 308 (341)
.+ ..+++|++|+++.+..........+++|++|++++ +.+..++.....+++|+.|++++|. ++.+|..+..+++|+
T Consensus 163 ~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~l~~L~ 240 (317)
T 3o53_A 163 ELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLE 240 (317)
T ss_dssp GGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCC
T ss_pred HHhhccCcCCEEECCCCcCcccccccccccCCEEECCC-CcCCcchhhhcccCcccEEECcCCc-ccchhhHhhcCCCCC
Confidence 55 47899999999433322223444689999999998 4688887777789999999999997 888999899999999
Q ss_pred EEEEecCC
Q 044597 309 KLELWWPE 316 (341)
Q Consensus 309 ~L~l~~~~ 316 (341)
.|++++|+
T Consensus 241 ~L~l~~N~ 248 (317)
T 3o53_A 241 HFDLRGNG 248 (317)
T ss_dssp EEECTTCC
T ss_pred EEEccCCC
Confidence 99999988
No 14
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.82 E-value=9.6e-21 Score=168.58 Aligned_cols=219 Identities=16% Similarity=0.154 Sum_probs=172.7
Q ss_pred ceeeeeccC-CCCcccChhhhhcCCCccEEecCCcccccc---chhhcccccCceeeecCcCCCCCCceEEeCCCcchhh
Q 044597 76 VRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHT---ADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEE 151 (341)
Q Consensus 76 ~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~l---p~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~ 151 (341)
.++++|+++ +.+..+|..+|+++++|++|++++|.+..+ |..+..+++|++|+++++.+. .. +..
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~----------~l-~~~ 96 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI----------TM-SSN 96 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE----------EE-EEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc----------cC-hhh
Confidence 578999998 588999998779999999999999977655 678889999999999983332 23 445
Q ss_pred hhCCCCCCceEEEEeecchhhhHHH--HHhcCCCCCCEEEEEeCCCCCCCCccC-c-ccccccCCccEEEEEeecCCC-C
Q 044597 152 ILGRLPNLQNLRIWGDLSYYQSLLS--KSLCRLSCLESLKLANESKMPRRSNTI-L-AEYQFPPSLTHLSFSNIELID-D 226 (341)
Q Consensus 152 ~l~~l~~L~~L~l~~~~~~~~~~l~--~~l~~l~~L~~L~l~~~~e~~~~l~~l-p-~~~~lp~~L~~L~l~~~~l~~-~ 226 (341)
+..+++|++|+++++. ...++ ..+..+++|+.|++++| .+... | .+..+ ++|++|++++|.+.. .
T Consensus 97 -~~~l~~L~~L~l~~n~---l~~~~~~~~~~~l~~L~~L~l~~n-----~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 97 -FLGLEQLEHLDFQHSN---LKQMSEFSVFLSLRNLIYLDISHT-----HTRVAFNGIFNGL-SSLEVLKMAGNSFQENF 166 (306)
T ss_dssp -EETCTTCCEEECTTSE---EESSTTTTTTTTCTTCCEEECTTS-----CCEECSTTTTTTC-TTCCEEECTTCEEGGGE
T ss_pred -cCCCCCCCEEECCCCc---ccccccchhhhhccCCCEEECCCC-----cCCccchhhcccC-cCCCEEECCCCcccccc
Confidence 8889999999999885 33333 36788999999999998 66654 4 67889 999999999999754 3
Q ss_pred CCccCcCCCCCCeEEEEEeC-cEe-eecCCCCCcccEEEEecCCCCCceee-cCCCCCcccEEEEecCCCCCccccccCC
Q 044597 227 PMPALEKLPVLQVLKLKYLG-RKL-ACSSDGFPKLKVLHLKSMLWLEEWTM-GIKAMPKLECVIINPCAHLKRIPEQLWC 303 (341)
Q Consensus 227 ~~~~l~~l~~L~~L~l~~~~-~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~c~~l~~lp~~l~~ 303 (341)
....++.+++|++|+++.+. ... +.....+++|++|+++++ .+..++. ....+++|+.|++++|..-...|..+..
T Consensus 167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 245 (306)
T 2z66_A 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 245 (306)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCC
T ss_pred chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCC-ccCccChhhccCcccCCEeECCCCCCcccCHHHHHh
Confidence 45678899999999993332 222 234567899999999984 4666553 4567899999999999854446777888
Q ss_pred CC-CCcEEEEecCC
Q 044597 304 LK-SLNKLELWWPE 316 (341)
Q Consensus 304 l~-~L~~L~l~~~~ 316 (341)
++ +|++|++++|+
T Consensus 246 ~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 246 FPSSLAFLNLTQND 259 (306)
T ss_dssp CCTTCCEEECTTCC
T ss_pred hhccCCEEEccCCC
Confidence 85 99999999976
No 15
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.82 E-value=1e-19 Score=171.85 Aligned_cols=226 Identities=19% Similarity=0.154 Sum_probs=168.8
Q ss_pred cccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCcccccc-chhhcccccCceeeecCcCCCCCCceEEeCCCc
Q 044597 70 PIMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHT-ADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCC 147 (341)
Q Consensus 70 ~~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~l-p~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~ 147 (341)
..+..+.+|++|+++ +.+..+|...|+++++|++|++++|.+..+ |..+..+++|++|+++++.+. ..
T Consensus 74 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~----------~~ 143 (477)
T 2id5_A 74 GAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV----------YI 143 (477)
T ss_dssp TTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCC----------EE
T ss_pred hhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccc----------ee
Confidence 467788899999998 578889887779999999999999987776 557889999999999884442 12
Q ss_pred chhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCC
Q 044597 148 STEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELID 225 (341)
Q Consensus 148 ~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~ 225 (341)
.+.. ++.+++|++|+++++... ...+..+..+++|+.|+++++ .+..++ .+..+ ++|+.|++++|....
T Consensus 144 ~~~~-~~~l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~l~~n-----~i~~~~~~~~~~l-~~L~~L~l~~~~~~~ 214 (477)
T 2id5_A 144 SHRA-FSGLNSLEQLTLEKCNLT--SIPTEALSHLHGLIVLRLRHL-----NINAIRDYSFKRL-YRLKVLEISHWPYLD 214 (477)
T ss_dssp CTTS-STTCTTCCEEEEESCCCS--SCCHHHHTTCTTCCEEEEESC-----CCCEECTTCSCSC-TTCCEEEEECCTTCC
T ss_pred Chhh-ccCCCCCCEEECCCCcCc--ccChhHhcccCCCcEEeCCCC-----cCcEeChhhcccC-cccceeeCCCCcccc
Confidence 0334 888999999999988522 222345788999999999988 677765 67788 899999999988544
Q ss_pred CCCccCcCCCCCCeEEEEEeCc-Eee-ecCCCCCcccEEEEecCCCCCceee-cCCCCCcccEEEEecCCCCCcc-cccc
Q 044597 226 DPMPALEKLPVLQVLKLKYLGR-KLA-CSSDGFPKLKVLHLKSMLWLEEWTM-GIKAMPKLECVIINPCAHLKRI-PEQL 301 (341)
Q Consensus 226 ~~~~~l~~l~~L~~L~l~~~~~-~~~-~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~c~~l~~l-p~~l 301 (341)
...+......+|++|+++.+.. ..+ .....+++|++|+++++ .+..++. ....+++|+.|++.+|. +..+ |..+
T Consensus 215 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~ 292 (477)
T 2id5_A 215 TMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN-PISTIEGSMLHELLRLQEIQLVGGQ-LAVVEPYAF 292 (477)
T ss_dssp EECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSS-CCCEECTTSCTTCTTCCEEECCSSC-CSEECTTTB
T ss_pred ccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCC-cCCccChhhccccccCCEEECCCCc-cceECHHHh
Confidence 4444455556899999943332 122 13457889999999984 4666653 34578899999999988 5554 6677
Q ss_pred CCCCCCcEEEEecCC
Q 044597 302 WCLKSLNKLELWWPE 316 (341)
Q Consensus 302 ~~l~~L~~L~l~~~~ 316 (341)
.++++|++|++++|.
T Consensus 293 ~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 293 RGLNYLRVLNVSGNQ 307 (477)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred cCcccCCEEECCCCc
Confidence 889999999999885
No 16
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.81 E-value=6.2e-20 Score=172.28 Aligned_cols=218 Identities=18% Similarity=0.185 Sum_probs=174.5
Q ss_pred ceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccc-hhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhh
Q 044597 76 VRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTA-DEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEIL 153 (341)
Q Consensus 76 ~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp-~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l 153 (341)
.++++|+++ +++..++...|+++++|++|+|++|.+..++ ..+.++++|++|+++++.+. .. ++..+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~----------~~-~~~~~ 143 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT----------VI-PSGAF 143 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS----------BC-CTTTS
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC----------cc-Chhhh
Confidence 578999998 6888886655599999999999999988886 67899999999999984443 22 22228
Q ss_pred CCCCCCceEEEEeecchhhhHHH-HHhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCCCCcc
Q 044597 154 GRLPNLQNLRIWGDLSYYQSLLS-KSLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDDPMPA 230 (341)
Q Consensus 154 ~~l~~L~~L~l~~~~~~~~~~l~-~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~~~ 230 (341)
+.+++|++|++++|. ...++ ..+..+++|+.|+++++. .++.++ .+..+ ++|++|++++|.++. ++.
T Consensus 144 ~~l~~L~~L~L~~N~---l~~~~~~~~~~l~~L~~L~l~~~~----~l~~i~~~~~~~l-~~L~~L~L~~n~l~~--~~~ 213 (452)
T 3zyi_A 144 EYLSKLRELWLRNNP---IESIPSYAFNRVPSLMRLDLGELK----KLEYISEGAFEGL-FNLKYLNLGMCNIKD--MPN 213 (452)
T ss_dssp SSCTTCCEEECCSCC---CCEECTTTTTTCTTCCEEECCCCT----TCCEECTTTTTTC-TTCCEEECTTSCCSS--CCC
T ss_pred cccCCCCEEECCCCC---cceeCHhHHhcCCcccEEeCCCCC----CccccChhhccCC-CCCCEEECCCCcccc--ccc
Confidence 899999999999985 33333 357899999999999866 788887 67889 999999999999743 467
Q ss_pred CcCCCCCCeEEEEEeC-cEe-eecCCCCCcccEEEEecCCCCCcee-ecCCCCCcccEEEEecCCCCCccccc-cCCCCC
Q 044597 231 LEKLPVLQVLKLKYLG-RKL-ACSSDGFPKLKVLHLKSMLWLEEWT-MGIKAMPKLECVIINPCAHLKRIPEQ-LWCLKS 306 (341)
Q Consensus 231 l~~l~~L~~L~l~~~~-~~~-~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~ 306 (341)
+..+++|++|+++.+. ... +.....+++|++|+++++ .+..+. .....+++|+.|++++|. +..+|.. +..+++
T Consensus 214 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~ 291 (452)
T 3zyi_A 214 LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERNAFDGLASLVELNLAHNN-LSSLPHDLFTPLRY 291 (452)
T ss_dssp CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTSSTTCTT
T ss_pred ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCC-cCceECHHHhcCCCCCCEEECCCCc-CCccChHHhccccC
Confidence 8999999999993322 222 344668999999999984 466654 345678999999999997 7787754 577999
Q ss_pred CcEEEEecCC
Q 044597 307 LNKLELWWPE 316 (341)
Q Consensus 307 L~~L~l~~~~ 316 (341)
|+.|++++||
T Consensus 292 L~~L~L~~Np 301 (452)
T 3zyi_A 292 LVELHLHHNP 301 (452)
T ss_dssp CCEEECCSSC
T ss_pred CCEEEccCCC
Confidence 9999999977
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.81 E-value=4e-20 Score=180.69 Aligned_cols=118 Identities=11% Similarity=0.142 Sum_probs=73.4
Q ss_pred ccccCCcceeeeeccCC-C-Cc--ccChhhhhcC------CCccEEecCCccccccch--hhcccccCceeeecC---c-
Q 044597 69 SPIMDQEVRLRENSIIP-S-LK--SLPSSFLSSL------LNLYTLEMPFSYIDHTAD--EFWKMSKLRYLNFGA---I- 132 (341)
Q Consensus 69 ~~~~~~l~~Lr~L~l~~-~-~~--~lp~~if~~L------~~L~~L~Ls~~~~~~lp~--~i~~L~~L~~L~l~~---~- 132 (341)
+..+.++++|++|+++. . +. .+|..+ +++ ++|++|++++|.+..+|. .++++++|++|++++ .
T Consensus 266 p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~-~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g 344 (636)
T 4eco_A 266 PTFLKALPEMQLINVACNRGISGEQLKDDW-QALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG 344 (636)
T ss_dssp CTTTTTCSSCCEEECTTCTTSCHHHHHHHH-HHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEE
T ss_pred hHHHhcCCCCCEEECcCCCCCccccchHHH-HhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCcc
Confidence 35667777888888873 3 65 477777 665 778888888887777777 777777888887777 2
Q ss_pred CCCCCC------ceEEeCC----CcchhhhhCCCCC-CceEEEEeecchhhhHHHHHhcCCC--CCCEEEEEeC
Q 044597 133 TLPAHP------GKYSLHP----CCSTEEILGRLPN-LQNLRIWGDLSYYQSLLSKSLCRLS--CLESLKLANE 193 (341)
Q Consensus 133 ~lp~~i------~~~~~~~----~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~l~~~l~~l~--~L~~L~l~~~ 193 (341)
.+| .+ +.+.+++ .. +.. ++.+++ |++|+++++. ...+|..+..++ +|+.|++++|
T Consensus 345 ~ip-~~~~l~~L~~L~L~~N~l~~l-p~~-l~~l~~~L~~L~Ls~N~---l~~lp~~~~~~~l~~L~~L~Ls~N 412 (636)
T 4eco_A 345 KLP-AFGSEIKLASLNLAYNQITEI-PAN-FCGFTEQVENLSFAHNK---LKYIPNIFDAKSVSVMSAIDFSYN 412 (636)
T ss_dssp ECC-CCEEEEEESEEECCSSEEEEC-CTT-SEEECTTCCEEECCSSC---CSSCCSCCCTTCSSCEEEEECCSS
T ss_pred chh-hhCCCCCCCEEECCCCccccc-cHh-hhhhcccCcEEEccCCc---CcccchhhhhcccCccCEEECcCC
Confidence 555 44 4444443 22 333 566666 7777766663 224444444333 5555555554
No 18
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=170.00 Aligned_cols=218 Identities=17% Similarity=0.181 Sum_probs=174.1
Q ss_pred ceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccc-hhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhh
Q 044597 76 VRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTA-DEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEIL 153 (341)
Q Consensus 76 ~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp-~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l 153 (341)
..++.|+++ +.+..++...|+++++|++|+|++|.+..++ ..+..+++|++|+++++.+. .. ++..+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~----------~~-~~~~~ 132 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT----------TI-PNGAF 132 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS----------SC-CTTTS
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC----------ee-CHhHh
Confidence 578889998 6888888666699999999999999988886 57899999999999984443 22 22228
Q ss_pred CCCCCCceEEEEeecchhhhHHH-HHhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCCCCcc
Q 044597 154 GRLPNLQNLRIWGDLSYYQSLLS-KSLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDDPMPA 230 (341)
Q Consensus 154 ~~l~~L~~L~l~~~~~~~~~~l~-~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~~~ 230 (341)
..+++|++|+++++. ...++ ..+..+++|+.|+++++. .++.++ .+..+ ++|++|++++|.++ .++.
T Consensus 133 ~~l~~L~~L~L~~N~---i~~~~~~~~~~l~~L~~L~l~~~~----~l~~i~~~~~~~l-~~L~~L~L~~n~l~--~~~~ 202 (440)
T 3zyj_A 133 VYLSKLKELWLRNNP---IESIPSYAFNRIPSLRRLDLGELK----RLSYISEGAFEGL-SNLRYLNLAMCNLR--EIPN 202 (440)
T ss_dssp CSCSSCCEEECCSCC---CCEECTTTTTTCTTCCEEECCCCT----TCCEECTTTTTTC-SSCCEEECTTSCCS--SCCC
T ss_pred hccccCceeeCCCCc---ccccCHHHhhhCcccCEeCCCCCC----CcceeCcchhhcc-cccCeecCCCCcCc--cccc
Confidence 899999999999985 33333 357899999999999865 777777 67889 99999999999974 4557
Q ss_pred CcCCCCCCeEEEEEeC-cEe-eecCCCCCcccEEEEecCCCCCceee-cCCCCCcccEEEEecCCCCCccccc-cCCCCC
Q 044597 231 LEKLPVLQVLKLKYLG-RKL-ACSSDGFPKLKVLHLKSMLWLEEWTM-GIKAMPKLECVIINPCAHLKRIPEQ-LWCLKS 306 (341)
Q Consensus 231 l~~l~~L~~L~l~~~~-~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~ 306 (341)
+..+++|++|+++.+. ... ......+++|++|++.+ +.+..++. ....+++|+.|++++|. +..+|.. +..+++
T Consensus 203 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~ 280 (440)
T 3zyj_A 203 LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ-SQIQVIERNAFDNLQSLVEINLAHNN-LTLLPHDLFTPLHH 280 (440)
T ss_dssp CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTT-CCCCEECTTSSTTCTTCCEEECTTSC-CCCCCTTTTSSCTT
T ss_pred cCCCcccCEEECCCCccCccChhhhccCccCCEEECCC-CceeEEChhhhcCCCCCCEEECCCCC-CCccChhHhccccC
Confidence 8999999999993332 222 33456789999999998 45666653 35578999999999997 7777754 577999
Q ss_pred CcEEEEecCC
Q 044597 307 LNKLELWWPE 316 (341)
Q Consensus 307 L~~L~l~~~~ 316 (341)
|+.|++++||
T Consensus 281 L~~L~L~~Np 290 (440)
T 3zyj_A 281 LERIHLHHNP 290 (440)
T ss_dssp CCEEECCSSC
T ss_pred CCEEEcCCCC
Confidence 9999999977
No 19
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.81 E-value=2e-20 Score=177.03 Aligned_cols=214 Identities=19% Similarity=0.142 Sum_probs=173.6
Q ss_pred CCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhh
Q 044597 73 DQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEE 151 (341)
Q Consensus 73 ~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~ 151 (341)
..+.+|++|+++ +.+..+|...|+++++|++|+|++|.+...+. ++.+++|++|++++ +. +..
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~--------------N~-l~~ 94 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNN--------------NY-VQE 94 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCS--------------SE-EEE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecC--------------Cc-CCC
Confidence 345689999998 58888875545999999999999998887665 99999999999998 33 444
Q ss_pred hhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccC-c-ccccccCCccEEEEEeecCCCCCCc
Q 044597 152 ILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTI-L-AEYQFPPSLTHLSFSNIELIDDPMP 229 (341)
Q Consensus 152 ~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~l-p-~~~~lp~~L~~L~l~~~~l~~~~~~ 229 (341)
+...++|++|++++|... .++ ...+++|+.|++++| .+..+ | .++.+ ++|+.|++++|.++...+.
T Consensus 95 -l~~~~~L~~L~L~~N~l~---~~~--~~~l~~L~~L~L~~N-----~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~ 162 (487)
T 3oja_A 95 -LLVGPSIETLHAANNNIS---RVS--CSRGQGKKNIYLANN-----KITMLRDLDEGCR-SRVQYLDLKLNEIDTVNFA 162 (487)
T ss_dssp -EEECTTCCEEECCSSCCC---CEE--ECCCSSCEEEECCSS-----CCCSGGGBCGGGG-SSEEEEECTTSCCCEEEGG
T ss_pred -CCCCCCcCEEECcCCcCC---CCC--ccccCCCCEEECCCC-----CCCCCCchhhcCC-CCCCEEECCCCCCCCcChH
Confidence 555689999999998632 221 235789999999998 77776 4 77889 9999999999998766666
Q ss_pred cCc-CCCCCCeEEEEEeCcEeeecCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCccccccCCCCCCc
Q 044597 230 ALE-KLPVLQVLKLKYLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLN 308 (341)
Q Consensus 230 ~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~ 308 (341)
.+. .+++|++|+++.+..........+++|++|++++ +.+..++...+.+++|+.|++++|. +..+|..+..+++|+
T Consensus 163 ~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~ 240 (487)
T 3oja_A 163 ELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLE 240 (487)
T ss_dssp GGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCC
T ss_pred HHhhhCCcccEEecCCCccccccccccCCCCCEEECCC-CCCCCCCHhHcCCCCccEEEecCCc-CcccchhhccCCCCC
Confidence 665 7999999999433322334445699999999998 4688888778889999999999998 888999999999999
Q ss_pred EEEEecCC
Q 044597 309 KLELWWPE 316 (341)
Q Consensus 309 ~L~l~~~~ 316 (341)
.|++++|+
T Consensus 241 ~L~l~~N~ 248 (487)
T 3oja_A 241 HFDLRGNG 248 (487)
T ss_dssp EEECTTCC
T ss_pred EEEcCCCC
Confidence 99999988
No 20
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.81 E-value=1.9e-19 Score=158.52 Aligned_cols=213 Identities=17% Similarity=0.131 Sum_probs=143.8
Q ss_pred eeccC-CCCcccChhhhhcCCCccEEecCCccccccch-hhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCC
Q 044597 80 ENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTAD-EFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLP 157 (341)
Q Consensus 80 ~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~-~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~ 157 (341)
.++.+ ..+..+|..+ .++|++|++++|.+..+|. .+..+++|++|+++++.+. ...+.. ++.++
T Consensus 15 ~~~c~~~~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~----------~~~~~~-~~~l~ 80 (285)
T 1ozn_A 15 TTSCPQQGLQAVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA----------RIDAAA-FTGLA 80 (285)
T ss_dssp EEECCSSCCSSCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC----------EECTTT-TTTCT
T ss_pred EEEcCcCCcccCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc----------eeCHhh-cCCcc
Confidence 44444 3666777544 4577777777777777653 4677777777777763332 110233 77777
Q ss_pred CCceEEEEeecchhhhHH-HHHhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCCCCccCcCC
Q 044597 158 NLQNLRIWGDLSYYQSLL-SKSLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDDPMPALEKL 234 (341)
Q Consensus 158 ~L~~L~l~~~~~~~~~~l-~~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l 234 (341)
+|++|+++++. ....+ +..+..+++|+.|+++++ .+..++ .+..+ ++|++|++++|.++..+...++.+
T Consensus 81 ~L~~L~l~~n~--~l~~~~~~~~~~l~~L~~L~l~~n-----~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l 152 (285)
T 1ozn_A 81 LLEQLDLSDNA--QLRSVDPATFHGLGRLHTLHLDRC-----GLQELGPGLFRGL-AALQYLYLQDNALQALPDDTFRDL 152 (285)
T ss_dssp TCCEEECCSCT--TCCCCCTTTTTTCTTCCEEECTTS-----CCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCEEeCCCCC--CccccCHHHhcCCcCCCEEECCCC-----cCCEECHhHhhCC-cCCCEEECCCCcccccCHhHhccC
Confidence 77777777763 13333 345677788888888777 666664 56777 788888888888765555567778
Q ss_pred CCCCeEEEEEeC-cEeee-cCCCCCcccEEEEecCCCCCce-eecCCCCCcccEEEEecCCCCCcccc-ccCCCCCCcEE
Q 044597 235 PVLQVLKLKYLG-RKLAC-SSDGFPKLKVLHLKSMLWLEEW-TMGIKAMPKLECVIINPCAHLKRIPE-QLWCLKSLNKL 310 (341)
Q Consensus 235 ~~L~~L~l~~~~-~~~~~-~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L 310 (341)
++|++|+++.+. ..... ....+++|++|+++++. +..+ +...+.+++|+.|++++|. +..+|. .+..+++|++|
T Consensus 153 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L 230 (285)
T 1ozn_A 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYL 230 (285)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CSCCCHHHHTTCTTCCEE
T ss_pred CCccEEECCCCcccccCHHHhcCccccCEEECCCCc-ccccCHhHccCcccccEeeCCCCc-CCcCCHHHcccCcccCEE
Confidence 888888883332 22222 24567888888888743 5555 4455678899999999997 666664 47889999999
Q ss_pred EEecCC
Q 044597 311 ELWWPE 316 (341)
Q Consensus 311 ~l~~~~ 316 (341)
++++|+
T Consensus 231 ~l~~N~ 236 (285)
T 1ozn_A 231 RLNDNP 236 (285)
T ss_dssp ECCSSC
T ss_pred eccCCC
Confidence 999876
No 21
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.81 E-value=1.8e-20 Score=183.14 Aligned_cols=182 Identities=14% Similarity=0.074 Sum_probs=113.9
Q ss_pred ccChhhhhcCCCccEEecCCccccc------------------cchhhc--ccccCceeeecCcCCCCCCceEEeCCCcc
Q 044597 89 SLPSSFLSSLLNLYTLEMPFSYIDH------------------TADEFW--KMSKLRYLNFGAITLPAHPGKYSLHPCCS 148 (341)
Q Consensus 89 ~lp~~if~~L~~L~~L~Ls~~~~~~------------------lp~~i~--~L~~L~~L~l~~~~lp~~i~~~~~~~~~~ 148 (341)
.+|..+ +++++|++|+|++|.+.. +|.+++ ++++|++|+++++.+.. ..
T Consensus 197 ~ip~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~---------~~- 265 (636)
T 4eco_A 197 FVSKAV-MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT---------KL- 265 (636)
T ss_dssp EECGGG-GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS---------SC-
T ss_pred cCCHHH-hcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc---------cC-
Confidence 488888 999999999999998888 999999 99999999999843321 33
Q ss_pred hhhhhCCCCCCceEEEEeecchhhh--HHHHHhcCC------CCCCEEEEEeCCCCCCCCccCc---ccccccCCccEEE
Q 044597 149 TEEILGRLPNLQNLRIWGDLSYYQS--LLSKSLCRL------SCLESLKLANESKMPRRSNTIL---AEYQFPPSLTHLS 217 (341)
Q Consensus 149 ~~~~l~~l~~L~~L~l~~~~~~~~~--~l~~~l~~l------~~L~~L~l~~~~e~~~~l~~lp---~~~~lp~~L~~L~ 217 (341)
|.. ++++++|++|++++|. ... .+|..++.+ ++|+.|++++| .++.+| .++.+ ++|++|+
T Consensus 266 p~~-l~~l~~L~~L~Ls~n~--~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-----~l~~ip~~~~l~~l-~~L~~L~ 336 (636)
T 4eco_A 266 PTF-LKALPEMQLINVACNR--GISGEQLKDDWQALADAPVGEKIQIIYIGYN-----NLKTFPVETSLQKM-KKLGMLE 336 (636)
T ss_dssp CTT-TTTCSSCCEEECTTCT--TSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-----CCSSCCCHHHHTTC-TTCCEEE
T ss_pred hHH-HhcCCCCCEEECcCCC--CCccccchHHHHhhhccccCCCCCEEECCCC-----cCCccCchhhhccC-CCCCEEe
Confidence 444 7777777777777663 122 466666554 77777777776 566666 25666 6777777
Q ss_pred EEeecCCCCCCccCcCCCCCCeEEEEEeC-cEeeecCCCCCc-ccEEEEecCCCCCceeecCCC--CCcccEEEEecCC
Q 044597 218 FSNIELIDDPMPALEKLPVLQVLKLKYLG-RKLACSSDGFPK-LKVLHLKSMLWLEEWTMGIKA--MPKLECVIINPCA 292 (341)
Q Consensus 218 l~~~~l~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~-L~~L~l~~~~~l~~~~~~~~~--l~~L~~L~l~~c~ 292 (341)
+++|.+.+... .++.+++|++|+++.+. ..++.....+++ |++|+++++. +..+|...+. +++|+.|++++|.
T Consensus 337 L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~ 413 (636)
T 4eco_A 337 CLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNE 413 (636)
T ss_dssp CCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSSC
T ss_pred CcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCCc
Confidence 77776542222 66666666666662211 122222334555 6666666532 3344433222 2245555555554
No 22
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.81 E-value=8.6e-20 Score=164.35 Aligned_cols=229 Identities=17% Similarity=0.206 Sum_probs=167.9
Q ss_pred ceeeeeccC-CCCcccChhhhhcCCCccEEecCCcccccc-chhhcccccCceeeecC---cCCCCCC----ceEEeCC-
Q 044597 76 VRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHT-ADEFWKMSKLRYLNFGA---ITLPAHP----GKYSLHP- 145 (341)
Q Consensus 76 ~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~l-p~~i~~L~~L~~L~l~~---~~lp~~i----~~~~~~~- 145 (341)
.++++|+++ +.+..+|...|+++++|++|++++|.+..+ |..++.+++|++|++++ ..+|..+ +.+.+++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n 133 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDN 133 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSS
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECCCC
Confidence 567888887 577777654448888888888888877776 66788888888888887 3444333 5566554
Q ss_pred ---CcchhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc-ccccccCCccEEEEEee
Q 044597 146 ---CCSTEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL-AEYQFPPSLTHLSFSNI 221 (341)
Q Consensus 146 ---~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp-~~~~lp~~L~~L~l~~~ 221 (341)
.. ++..++.+++|++|+++++........+..+..+ +|+.|+++++ .++.+| .+ +++|++|++++|
T Consensus 134 ~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n-----~l~~l~~~~---~~~L~~L~l~~n 203 (332)
T 2ft3_A 134 RIRKV-PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA-----KLTGIPKDL---PETLNELHLDHN 203 (332)
T ss_dssp CCCCC-CSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS-----BCSSCCSSS---CSSCSCCBCCSS
T ss_pred ccCcc-CHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC-----CCCccCccc---cCCCCEEECCCC
Confidence 23 2323788999999999988633333445556666 8999999888 778887 43 278999999999
Q ss_pred cCCCCCCccCcCCCCCCeEEEEEeCc-Eee-ecCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCcccc
Q 044597 222 ELIDDPMPALEKLPVLQVLKLKYLGR-KLA-CSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPE 299 (341)
Q Consensus 222 ~l~~~~~~~l~~l~~L~~L~l~~~~~-~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~ 299 (341)
.++......+..+++|++|+++.+.. ... .....+++|++|+++++ .+..++...+.+++|+.|++++|+ ++.+|.
T Consensus 204 ~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~-l~~~~~ 281 (332)
T 2ft3_A 204 KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTNN-ITKVGV 281 (332)
T ss_dssp CCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSSC-CCBCCT
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCCC-CCccCh
Confidence 98777777899999999999943322 111 13456889999999984 577888777889999999999998 777664
Q ss_pred c-cCC------CCCCcEEEEecCC
Q 044597 300 Q-LWC------LKSLNKLELWWPE 316 (341)
Q Consensus 300 ~-l~~------l~~L~~L~l~~~~ 316 (341)
. +.. .++|+.|++.+||
T Consensus 282 ~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 282 NDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp TSSSCSSCCSSSCCBSEEECCSSS
T ss_pred hHccccccccccccccceEeecCc
Confidence 2 222 4678999999998
No 23
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.80 E-value=1.9e-20 Score=186.92 Aligned_cols=235 Identities=19% Similarity=0.140 Sum_probs=185.7
Q ss_pred ccCC-cceeeeeccC-CCCc-ccChhhhhcCCCccEEecCCcccc-ccchh-hcccccCceeeecC----cCCCCCC---
Q 044597 71 IMDQ-EVRLRENSII-PSLK-SLPSSFLSSLLNLYTLEMPFSYID-HTADE-FWKMSKLRYLNFGA----ITLPAHP--- 138 (341)
Q Consensus 71 ~~~~-l~~Lr~L~l~-~~~~-~lp~~if~~L~~L~~L~Ls~~~~~-~lp~~-i~~L~~L~~L~l~~----~~lp~~i--- 138 (341)
.+.. +.+|++|+++ +.+. .+|..+ +++++|++|++++|.+. .+|.. ++++++|++|++++ ..+|..+
T Consensus 288 ~~~~~~~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l 366 (768)
T 3rgz_A 288 FLSGACDTLTGLDLSGNHFYGAVPPFF-GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL 366 (768)
T ss_dssp CSCTTCTTCSEEECCSSEEEECCCGGG-GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHH
T ss_pred HHHhhcCcCCEEECcCCcCCCccchHH-hcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhh
Confidence 3434 4888999997 4555 567777 99999999999999776 78876 88899999999988 2555533
Q ss_pred ----ceEEeCC-----CcchhhhhCC--CCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCc-cCc-c
Q 044597 139 ----GKYSLHP-----CCSTEEILGR--LPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSN-TIL-A 205 (341)
Q Consensus 139 ----~~~~~~~-----~~~~~~~l~~--l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~-~lp-~ 205 (341)
+.+.+++ .. ++. +.. +++|++|++.+|. ....+|..++.+++|+.|++++| .+. .+| .
T Consensus 367 ~~~L~~L~Ls~N~l~~~~-~~~-~~~~~~~~L~~L~L~~n~--l~~~~p~~l~~l~~L~~L~Ls~N-----~l~~~~p~~ 437 (768)
T 3rgz_A 367 SASLLTLDLSSNNFSGPI-LPN-LCQNPKNTLQELYLQNNG--FTGKIPPTLSNCSELVSLHLSFN-----YLSGTIPSS 437 (768)
T ss_dssp TTTCSEEECCSSEEEEEC-CTT-TTCSTTCCCCEEECCSSE--EEEECCGGGGGCTTCCEEECCSS-----EEESCCCGG
T ss_pred hcCCcEEEccCCCcCCCc-Chh-hhhcccCCccEEECCCCc--cccccCHHHhcCCCCCEEECcCC-----cccCcccHH
Confidence 5555554 22 344 554 7889999999886 33467778999999999999998 565 567 8
Q ss_pred cccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeC--cEeeecCCCCCcccEEEEecCCCCCceeecCCCCCcc
Q 044597 206 EYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLG--RKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKL 283 (341)
Q Consensus 206 ~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L 283 (341)
+..+ ++|+.|++++|.+....+..++.+++|++|+++.+. ...+.....+++|++|+++++.-...+|...+.+++|
T Consensus 438 l~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 516 (768)
T 3rgz_A 438 LGSL-SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 516 (768)
T ss_dssp GGGC-TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred HhcC-CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCC
Confidence 8899 999999999999877777789999999999993332 2334455678999999999976555777778889999
Q ss_pred cEEEEecCCCCCccccccCCCCCCcEEEEecCC
Q 044597 284 ECVIINPCAHLKRIPEQLWCLKSLNKLELWWPE 316 (341)
Q Consensus 284 ~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 316 (341)
+.|++++|...+.+|..+.++++|++|++++|+
T Consensus 517 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 517 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp CEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred CEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 999999999666799999999999999999876
No 24
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.80 E-value=1.6e-19 Score=180.62 Aligned_cols=231 Identities=16% Similarity=0.231 Sum_probs=144.0
Q ss_pred ccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhccccc-CceeeecC---cCCCCCC-------
Q 044597 71 IMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSK-LRYLNFGA---ITLPAHP------- 138 (341)
Q Consensus 71 ~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~-L~~L~l~~---~~lp~~i------- 138 (341)
.+..+++|+.|+++ +.+..+| .+ +++++|++|++++|.+..+|..+..+++ |++|++++ ..+|..+
T Consensus 568 ~l~~L~~L~~L~Ls~N~l~~lp-~~-~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~ 645 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNKVRHLE-AF-GTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYV 645 (876)
T ss_dssp HHTTCTTCCEEECTTSCCCBCC-CC-CTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSC
T ss_pred hhhcCCCCCEEECCCCCcccch-hh-cCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCC
Confidence 35555566666665 3555555 44 6666666666666655566666666666 66666665 3334322
Q ss_pred -ceEEeCCCcch----hh---hhC--CCCCCceEEEEeecchhhhHHHHHh-cCCCCCCEEEEEeCCCCCCCCccCc-cc
Q 044597 139 -GKYSLHPCCST----EE---ILG--RLPNLQNLRIWGDLSYYQSLLSKSL-CRLSCLESLKLANESKMPRRSNTIL-AE 206 (341)
Q Consensus 139 -~~~~~~~~~~~----~~---~l~--~l~~L~~L~l~~~~~~~~~~l~~~l-~~l~~L~~L~l~~~~e~~~~l~~lp-~~ 206 (341)
+.+.++++. + +. .++ .+++|+.|++++|. ...+|..+ ..+++|+.|++++| .+..+| ++
T Consensus 646 L~~L~Ls~N~-l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~---L~~lp~~~~~~l~~L~~L~Ls~N-----~L~~ip~~~ 716 (876)
T 4ecn_A 646 MGSVDFSYNK-IGSEGRNISCSMDDYKGINASTVTLSYNE---IQKFPTELFATGSPISTIILSNN-----LMTSIPENS 716 (876)
T ss_dssp EEEEECCSSC-TTTTSSSCSSCTTTCCCCCEEEEECCSSC---CCSCCHHHHHTTCCCSEEECCSC-----CCSCCCTTS
T ss_pred CCEEECcCCc-CCCccccchhhhccccCCCcCEEEccCCc---CCccCHHHHccCCCCCEEECCCC-----cCCccChHH
Confidence 334444322 1 11 011 23467777777764 33455554 47788888888887 777777 44
Q ss_pred cccc-------CCccEEEEEeecCCCCCCccCc--CCCCCCeEEEEEeC-cEeeecCCCCCcccEEEEec------CCCC
Q 044597 207 YQFP-------PSLTHLSFSNIELIDDPMPALE--KLPVLQVLKLKYLG-RKLACSSDGFPKLKVLHLKS------MLWL 270 (341)
Q Consensus 207 ~~lp-------~~L~~L~l~~~~l~~~~~~~l~--~l~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~------~~~l 270 (341)
...+ ++|+.|++++|.++ ..+..+. .+++|+.|+++.+. ..++.....+++|+.|++++ +.-.
T Consensus 717 ~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~ 795 (876)
T 4ecn_A 717 LKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRIL 795 (876)
T ss_dssp SSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCC
T ss_pred hccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCccccccc
Confidence 3320 27888888888875 3334454 78888888883322 22444455788888888875 2223
Q ss_pred CceeecCCCCCcccEEEEecCCCCCccccccCCCCCCcEEEEecCC
Q 044597 271 EEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLELWWPE 316 (341)
Q Consensus 271 ~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 316 (341)
..+|...+.+++|+.|++++|. ++.+|..+. ++|+.|++++|+
T Consensus 796 ~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~l~--~~L~~LdLs~N~ 838 (876)
T 4ecn_A 796 RQWPTGITTCPSLIQLQIGSND-IRKVDEKLT--PQLYILDIADNP 838 (876)
T ss_dssp CCCCTTGGGCSSCCEEECCSSC-CCBCCSCCC--SSSCEEECCSCT
T ss_pred ccChHHHhcCCCCCEEECCCCC-CCccCHhhc--CCCCEEECCCCC
Confidence 4556566678888888888888 588887654 688889988887
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.80 E-value=2.7e-19 Score=167.86 Aligned_cols=126 Identities=21% Similarity=0.214 Sum_probs=99.2
Q ss_pred CCCCEEEEEeCCCCCCCCccC-c-ccccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeC-cEe-eecCCCCCc
Q 044597 183 SCLESLKLANESKMPRRSNTI-L-AEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLG-RKL-ACSSDGFPK 258 (341)
Q Consensus 183 ~~L~~L~l~~~~e~~~~l~~l-p-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~-~~~-~~~~~~~~~ 258 (341)
++|+.|+++++ .+... | ++..+ ++|++|++++|.+.......++.+++|++|+++.+. ... +.....+++
T Consensus 275 ~~L~~L~l~~n-----~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 348 (455)
T 3v47_A 275 SGVKTCDLSKS-----KIFALLKSVFSHF-TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK 348 (455)
T ss_dssp SCCCEEECCSS-----CCCEECTTTTTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTT
T ss_pred cCceEEEecCc-----cccccchhhcccC-CCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCccc
Confidence 57788888777 55554 5 78889 999999999999876667789999999999993332 222 234567999
Q ss_pred ccEEEEecCCCCCce-eecCCCCCcccEEEEecCCCCCccccc-cCCCCCCcEEEEecCC
Q 044597 259 LKVLHLKSMLWLEEW-TMGIKAMPKLECVIINPCAHLKRIPEQ-LWCLKSLNKLELWWPE 316 (341)
Q Consensus 259 L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~~~ 316 (341)
|++|+++++ .+..+ +...+.+++|++|++.+|. ++.+|.. +..+++|++|++++|+
T Consensus 349 L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 349 LEVLDLSYN-HIRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEECCCC-cccccChhhccccccccEEECCCCc-cccCCHhHhccCCcccEEEccCCC
Confidence 999999985 46666 4556789999999999998 7777764 4789999999999866
No 26
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.80 E-value=2e-19 Score=174.80 Aligned_cols=233 Identities=21% Similarity=0.136 Sum_probs=127.9
Q ss_pred cCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCcccccc-chhhcccccCceeeecCc----CCCCCC-------
Q 044597 72 MDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHT-ADEFWKMSKLRYLNFGAI----TLPAHP------- 138 (341)
Q Consensus 72 ~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~l-p~~i~~L~~L~~L~l~~~----~lp~~i------- 138 (341)
+..+++|++|+++ +.+..+|..+ +++++|++|++++|.+..+ |..+..+++|++|+++++ .+|.+.
T Consensus 274 ~~~l~~L~~L~l~~n~l~~lp~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 352 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLSELPSGL-VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352 (606)
T ss_dssp TTTCTTCSEEECTTSCCSCCCSSC-CSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred hccccCCCEEeccCCccCCCChhh-cccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence 5667777777776 4677777777 7777777777777766665 446777777777777762 233321
Q ss_pred ceEEeCCCc----c--hhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccC-c--ccccc
Q 044597 139 GKYSLHPCC----S--TEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTI-L--AEYQF 209 (341)
Q Consensus 139 ~~~~~~~~~----~--~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~l-p--~~~~l 209 (341)
+.+.++++. . +.. ++.+++|++|+++++. .....+..+..+++|+.|++++| .+... | ++..+
T Consensus 353 ~~L~l~~n~l~~~~~~~~~-~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n-----~l~~~~~~~~~~~l 424 (606)
T 3t6q_A 353 RELDLSHDDIETSDCCNLQ-LRNLSHLQSLNLSYNE--PLSLKTEAFKECPQLELLDLAFT-----RLKVKDAQSPFQNL 424 (606)
T ss_dssp CEEECCSSCCCEEEESTTT-TTTCTTCCEEECCSCS--CEEECTTTTTTCTTCSEEECTTC-----CEECCTTCCTTTTC
T ss_pred CEEECCCCccccccCcchh-cccCCCCCEEECCCCc--CCcCCHHHhcCCccCCeEECCCC-----cCCCcccchhhhCc
Confidence 334443311 0 112 4555555555555553 11222334555555666665555 33332 2 34555
Q ss_pred cCCccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeC---cEee--ecCCCCCcccEEEEecCCCCCce-eecCCCCCcc
Q 044597 210 PPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLG---RKLA--CSSDGFPKLKVLHLKSMLWLEEW-TMGIKAMPKL 283 (341)
Q Consensus 210 p~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~---~~~~--~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L 283 (341)
++|+.|++++|.+.......++.+++|++|+++.+. .... .....+++|++|+++++. +..+ +...+.+++|
T Consensus 425 -~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L 502 (606)
T 3t6q_A 425 -HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQHAFTSLKMM 502 (606)
T ss_dssp -TTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC-CCEECTTTTTTCTTC
T ss_pred -ccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc-cCccChhhhccccCC
Confidence 666666666666544444556666666666661111 1111 123345666666666642 3333 2334556666
Q ss_pred cEEEEecCCCCCccccccCCCCCCcEEEEecCC
Q 044597 284 ECVIINPCAHLKRIPEQLWCLKSLNKLELWWPE 316 (341)
Q Consensus 284 ~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 316 (341)
+.|++++|..-...|..+.++++| +|++++|.
T Consensus 503 ~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~ 534 (606)
T 3t6q_A 503 NHVDLSHNRLTSSSIEALSHLKGI-YLNLASNH 534 (606)
T ss_dssp CEEECCSSCCCGGGGGGGTTCCSC-EEECCSSC
T ss_pred CEEECCCCccCcCChhHhCccccc-EEECcCCc
Confidence 666666665333345556666666 66666654
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.79 E-value=1e-18 Score=164.57 Aligned_cols=100 Identities=24% Similarity=0.291 Sum_probs=55.5
Q ss_pred CCccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeCcEeeecCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEec
Q 044597 211 PSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINP 290 (341)
Q Consensus 211 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~ 290 (341)
++|+.|++++|.+.. ++.+..+++|+.|+++.+..........+++|++|+++++ .+..++. .+.+++|+.|++.+
T Consensus 221 ~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~~ 296 (466)
T 1o6v_A 221 TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGAN-QISNISP-LAGLTALTNLELNE 296 (466)
T ss_dssp TTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSS-CCCCCGG-GTTCTTCSEEECCS
T ss_pred CCCCEEECCCCCccc--chhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCC-ccCcccc-ccCCCccCeEEcCC
Confidence 455555555554422 2345555566666552222111112445666666666663 3444332 44577777777777
Q ss_pred CCCCCccccccCCCCCCcEEEEecCC
Q 044597 291 CAHLKRIPEQLWCLKSLNKLELWWPE 316 (341)
Q Consensus 291 c~~l~~lp~~l~~l~~L~~L~l~~~~ 316 (341)
|. +..++. +..+++|+.|++++|.
T Consensus 297 n~-l~~~~~-~~~l~~L~~L~L~~n~ 320 (466)
T 1o6v_A 297 NQ-LEDISP-ISNLKNLTYLTLYFNN 320 (466)
T ss_dssp SC-CSCCGG-GGGCTTCSEEECCSSC
T ss_pred Cc-ccCchh-hcCCCCCCEEECcCCc
Confidence 76 555554 5667778888887775
No 28
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.79 E-value=3.5e-19 Score=161.23 Aligned_cols=228 Identities=18% Similarity=0.163 Sum_probs=143.8
Q ss_pred ccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCC---------Cce
Q 044597 71 IMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAH---------PGK 140 (341)
Q Consensus 71 ~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~---------i~~ 140 (341)
.+..+++|++|+++ +.+..+| .+ +++++|++|++++|.+..+|. +..+++|++|+++++..... ++.
T Consensus 83 ~~~~l~~L~~L~L~~n~i~~~~-~~-~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~ 159 (347)
T 4fmz_A 83 PLSNLVKLTNLYIGTNKITDIS-AL-QNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNY 159 (347)
T ss_dssp GGTTCTTCCEEECCSSCCCCCG-GG-TTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCE
T ss_pred hhhcCCcCCEEEccCCcccCch-HH-cCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcE
Confidence 37888999999998 5777776 46 999999999999999888876 88999999999988322111 133
Q ss_pred EEeCCCc--chhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCcccccccCCccEEEE
Q 044597 141 YSLHPCC--STEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSF 218 (341)
Q Consensus 141 ~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l 218 (341)
+.+.+.. .... ++.+++|++|+++++... .++. +..+++|+.|+++++ .+..++.+..+ ++|++|++
T Consensus 160 L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~---~~~~-~~~l~~L~~L~l~~n-----~l~~~~~~~~~-~~L~~L~l 228 (347)
T 4fmz_A 160 LTVTESKVKDVTP-IANLTDLYSLSLNYNQIE---DISP-LASLTSLHYFTAYVN-----QITDITPVANM-TRLNSLKI 228 (347)
T ss_dssp EECCSSCCCCCGG-GGGCTTCSEEECTTSCCC---CCGG-GGGCTTCCEEECCSS-----CCCCCGGGGGC-TTCCEEEC
T ss_pred EEecCCCcCCchh-hccCCCCCEEEccCCccc---cccc-ccCCCccceeecccC-----CCCCCchhhcC-CcCCEEEc
Confidence 3433311 0222 445555555555555311 1211 445555666665555 44444434456 67777777
Q ss_pred EeecCCCCCCccCcCCCCCCeEEEEEeCcEeeecCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCccc
Q 044597 219 SNIELIDDPMPALEKLPVLQVLKLKYLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIP 298 (341)
Q Consensus 219 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp 298 (341)
++|.++.. +.+..+++|++|+++.+..........+++|++|+++++ .+..++ ....+++|+.|++++|..-...|
T Consensus 229 ~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~ 304 (347)
T 4fmz_A 229 GNNKITDL--SPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSN-QISDIS-VLNNLSQLNSLFLNNNQLGNEDM 304 (347)
T ss_dssp CSSCCCCC--GGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSCCCGGGH
T ss_pred cCCccCCC--cchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCC-ccCCCh-hhcCCCCCCEEECcCCcCCCcCh
Confidence 77776332 236777777777773332222233456777888887774 455543 24467778888888877333345
Q ss_pred cccCCCCCCcEEEEecCC
Q 044597 299 EQLWCLKSLNKLELWWPE 316 (341)
Q Consensus 299 ~~l~~l~~L~~L~l~~~~ 316 (341)
..+.++++|++|++++|+
T Consensus 305 ~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 305 EVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp HHHHTCTTCSEEECCSSS
T ss_pred hHhhccccCCEEEccCCc
Confidence 556777788888888776
No 29
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.79 E-value=3.9e-19 Score=177.83 Aligned_cols=239 Identities=13% Similarity=0.132 Sum_probs=135.5
Q ss_pred ccccCCcceeeeeccCC-C-Cc--ccChhhhhcCC-------CccEEecCCccccccch--hhcccccCceeeecC---c
Q 044597 69 SPIMDQEVRLRENSIIP-S-LK--SLPSSFLSSLL-------NLYTLEMPFSYIDHTAD--EFWKMSKLRYLNFGA---I 132 (341)
Q Consensus 69 ~~~~~~l~~Lr~L~l~~-~-~~--~lp~~if~~L~-------~L~~L~Ls~~~~~~lp~--~i~~L~~L~~L~l~~---~ 132 (341)
++.+.++++|++|+++. . +. .+|..+ ++++ +|++|++++|.+..+|. .++++++|++|++++ .
T Consensus 508 P~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i-~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~ 586 (876)
T 4ecn_A 508 PDFLYDLPELQSLNIACNRGISAAQLKADW-TRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR 586 (876)
T ss_dssp CGGGGGCSSCCEEECTTCTTSCHHHHHHHH-HHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC
T ss_pred hHHHhCCCCCCEEECcCCCCcccccchHHH-HhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc
Confidence 35677788888888873 4 65 477766 6655 88888888887778887 788888888888887 3
Q ss_pred CCCCCC------ceEEeCC----CcchhhhhCCCCC-CceEEEEeecchhhhHHHHHhcCCCC--CCEEEEEeCCC---C
Q 044597 133 TLPAHP------GKYSLHP----CCSTEEILGRLPN-LQNLRIWGDLSYYQSLLSKSLCRLSC--LESLKLANESK---M 196 (341)
Q Consensus 133 ~lp~~i------~~~~~~~----~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~l~~~l~~l~~--L~~L~l~~~~e---~ 196 (341)
.+| .+ +.+.+++ .. +.. +..+++ |++|++++|. ...+|..+..++. |+.|++++|.- +
T Consensus 587 ~lp-~~~~L~~L~~L~Ls~N~l~~l-p~~-l~~l~~~L~~L~Ls~N~---L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~i 660 (876)
T 4ecn_A 587 HLE-AFGTNVKLTDLKLDYNQIEEI-PED-FCAFTDQVEGLGFSHNK---LKYIPNIFNAKSVYVMGSVDFSYNKIGSEG 660 (876)
T ss_dssp BCC-CCCTTSEESEEECCSSCCSCC-CTT-SCEECTTCCEEECCSSC---CCSCCSCCCTTCSSCEEEEECCSSCTTTTS
T ss_pred cch-hhcCCCcceEEECcCCccccc-hHH-HhhccccCCEEECcCCC---CCcCchhhhccccCCCCEEECcCCcCCCcc
Confidence 444 33 4555554 23 334 677777 8888888774 2244544444432 55555555410 0
Q ss_pred C---C------------------CCccCc-cc-ccccCCccEEEEEeecCCCCCCccCc-------CCCCCCeEEEEEeC
Q 044597 197 P---R------------------RSNTIL-AE-YQFPPSLTHLSFSNIELIDDPMPALE-------KLPVLQVLKLKYLG 246 (341)
Q Consensus 197 ~---~------------------~l~~lp-~~-~~lp~~L~~L~l~~~~l~~~~~~~l~-------~l~~L~~L~l~~~~ 246 (341)
+ . .+..+| ++ ..+ ++|+.|++++|.+...+...+. ++++|+.|+++.+.
T Consensus 661 p~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l-~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~ 739 (876)
T 4ecn_A 661 RNISCSMDDYKGINASTVTLSYNEIQKFPTELFATG-SPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK 739 (876)
T ss_dssp SSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTT-CCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSC
T ss_pred ccchhhhccccCCCcCEEEccCCcCCccCHHHHccC-CCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCC
Confidence 0 0 444444 22 244 5566666666555422222222 12256666662211
Q ss_pred -cEeeecCC--CCCcccEEEEecCCCCCceeecCCCCCcccEEEEec------CCCCCccccccCCCCCCcEEEEecCC
Q 044597 247 -RKLACSSD--GFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINP------CAHLKRIPEQLWCLKSLNKLELWWPE 316 (341)
Q Consensus 247 -~~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~------c~~l~~lp~~l~~l~~L~~L~l~~~~ 316 (341)
..++.... .+++|+.|+++++ .+..+|...+.+++|+.|++++ |...+.+|..+.++++|+.|++++|.
T Consensus 740 L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~ 817 (876)
T 4ecn_A 740 LTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND 817 (876)
T ss_dssp CCCCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred CccchHHhhhccCCCcCEEEeCCC-CCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC
Confidence 12222222 4566666666653 3444555555666666666654 33334456566666666666666665
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.79 E-value=3.4e-19 Score=167.14 Aligned_cols=104 Identities=16% Similarity=0.175 Sum_probs=74.5
Q ss_pred CCccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeC-cEe-eecCCCCCcccEEEEecCCCCCcee-ecCCCCCcccEEE
Q 044597 211 PSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLG-RKL-ACSSDGFPKLKVLHLKSMLWLEEWT-MGIKAMPKLECVI 287 (341)
Q Consensus 211 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~-~~~-~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~ 287 (341)
++|+.|++++|.+.......++.+++|++|+++.+. ... +.....+++|++|+++++ .+..++ ...+.+++|++|+
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLD 353 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEE
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCC-ccCCcChhHhcCcccCCEEE
Confidence 356666666666655555567888889998883222 222 224557889999999985 456653 4456789999999
Q ss_pred EecCCCCCcc-ccccCCCCCCcEEEEecCC
Q 044597 288 INPCAHLKRI-PEQLWCLKSLNKLELWWPE 316 (341)
Q Consensus 288 l~~c~~l~~l-p~~l~~l~~L~~L~l~~~~ 316 (341)
+++|. +..+ |..+..+++|++|++++|.
T Consensus 354 Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 354 LSYNH-IRALGDQSFLGLPNLKELALDTNQ 382 (455)
T ss_dssp CCSSC-CCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCCCc-ccccChhhccccccccEEECCCCc
Confidence 99998 5554 6778889999999999986
No 31
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.79 E-value=6.2e-19 Score=159.56 Aligned_cols=231 Identities=16% Similarity=0.187 Sum_probs=174.9
Q ss_pred ccccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCC--------CCCc
Q 044597 69 SPIMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLP--------AHPG 139 (341)
Q Consensus 69 ~~~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp--------~~i~ 139 (341)
.+.+..+.+|++|+++ +.+..+|. + ..+++|++|++++|.....+..+..+++|++|+++++.+. +.++
T Consensus 103 ~~~~~~l~~L~~L~l~~n~i~~~~~-~-~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~ 180 (347)
T 4fmz_A 103 ISALQNLTNLRELYLNEDNISDISP-L-ANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLY 180 (347)
T ss_dssp CGGGTTCTTCSEEECTTSCCCCCGG-G-TTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCS
T ss_pred chHHcCCCcCCEEECcCCcccCchh-h-ccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCC
Confidence 3567888999999998 57888876 5 8999999999999943333445888888999988883222 1226
Q ss_pred eEEeCCCc--chhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCcccccccCCccEEE
Q 044597 140 KYSLHPCC--STEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLS 217 (341)
Q Consensus 140 ~~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~ 217 (341)
.+.++++. ..+. +..+++|+.|++.++...... . +..+++|+.|++++| .+..++.+..+ ++|++|+
T Consensus 181 ~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~---~-~~~~~~L~~L~l~~n-----~l~~~~~~~~l-~~L~~L~ 249 (347)
T 4fmz_A 181 SLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDIT---P-VANMTRLNSLKIGNN-----KITDLSPLANL-SQLTWLE 249 (347)
T ss_dssp EEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCG---G-GGGCTTCCEEECCSS-----CCCCCGGGTTC-TTCCEEE
T ss_pred EEEccCCccccccc-ccCCCccceeecccCCCCCCc---h-hhcCCcCCEEEccCC-----ccCCCcchhcC-CCCCEEE
Confidence 66666522 1444 778999999999998633222 2 788999999999998 78887766778 9999999
Q ss_pred EEeecCCCCCCccCcCCCCCCeEEEEEeCcEeeecCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCcc
Q 044597 218 FSNIELIDDPMPALEKLPVLQVLKLKYLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRI 297 (341)
Q Consensus 218 l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l 297 (341)
+++|.++. ++.+..+++|++|+++.+..........+++|++|+++++.-....+...+.+++|+.|++++|+ +..+
T Consensus 250 l~~n~l~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~ 326 (347)
T 4fmz_A 250 IGTNQISD--INAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDI 326 (347)
T ss_dssp CCSSCCCC--CGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCC
T ss_pred CCCCccCC--ChhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccc
Confidence 99999744 46789999999999943332222345678999999999975333333445679999999999999 7777
Q ss_pred ccccCCCCCCcEEEEecCC
Q 044597 298 PEQLWCLKSLNKLELWWPE 316 (341)
Q Consensus 298 p~~l~~l~~L~~L~l~~~~ 316 (341)
+. +..+++|++|++++|+
T Consensus 327 ~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 327 RP-LASLSKMDSADFANQV 344 (347)
T ss_dssp GG-GGGCTTCSEESSSCC-
T ss_pred cC-hhhhhccceeehhhhc
Confidence 65 7889999999999997
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.78 E-value=1.5e-18 Score=163.49 Aligned_cols=228 Identities=18% Similarity=0.191 Sum_probs=117.2
Q ss_pred cCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCc---CCCC-----CCceEE
Q 044597 72 MDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAI---TLPA-----HPGKYS 142 (341)
Q Consensus 72 ~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~---~lp~-----~i~~~~ 142 (341)
+..+.+|++|+++ +.+..+|. + +++++|++|++++|.+..+|. +.++++|++|+++++ .+|. .++.+.
T Consensus 86 ~~~l~~L~~L~l~~n~l~~~~~-~-~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ 162 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQIADITP-L-ANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLS 162 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG-G-TTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEE
T ss_pred hhccccCCEEECCCCccccChh-h-cCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCCChhhccCCcccEee
Confidence 6677777777776 46666665 5 777777777777777777764 777777777777761 1111 002222
Q ss_pred eCC--CcchhhhhCCCCCCceEEEEeecchhh-------------------hHHHHHhcCCCCCCEEEEEeCCCCCCCCc
Q 044597 143 LHP--CCSTEEILGRLPNLQNLRIWGDLSYYQ-------------------SLLSKSLCRLSCLESLKLANESKMPRRSN 201 (341)
Q Consensus 143 ~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~-------------------~~l~~~l~~l~~L~~L~l~~~~e~~~~l~ 201 (341)
+++ .. ... ++++++|++|+++++..... ..++ .++.+++|+.|++++| .+.
T Consensus 163 l~~~~~~-~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n-----~l~ 234 (466)
T 1o6v_A 163 FGNQVTD-LKP-LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDIT-PLGILTNLDELSLNGN-----QLK 234 (466)
T ss_dssp EEESCCC-CGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCG-GGGGCTTCCEEECCSS-----CCC
T ss_pred cCCcccC-chh-hccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCcccccc-cccccCCCCEEECCCC-----Ccc
Confidence 211 11 122 34444444444444321111 1111 1344555555555554 444
Q ss_pred cCcccccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeCcEeeecCCCCCcccEEEEecCC-------------
Q 044597 202 TILAEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLGRKLACSSDGFPKLKVLHLKSML------------- 268 (341)
Q Consensus 202 ~lp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~------------- 268 (341)
.++.+..+ ++|+.|++++|.+... ..++.+++|++|+++.+..........+++|++|+++++.
T Consensus 235 ~~~~l~~l-~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L 311 (466)
T 1o6v_A 235 DIGTLASL-TNLTDLDLANNQISNL--APLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNL 311 (466)
T ss_dssp CCGGGGGC-TTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTC
T ss_pred cchhhhcC-CCCCEEECCCCccccc--hhhhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchhhcCCCCC
Confidence 44544556 6777777777765332 2356666666666622221111113344555555554421
Q ss_pred --------CCCceeecCCCCCcccEEEEecCCCCCccccccCCCCCCcEEEEecCC
Q 044597 269 --------WLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLELWWPE 316 (341)
Q Consensus 269 --------~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 316 (341)
.+..++. .+.+++|+.|++.+|. +..++ .+.++++|+.|++++|.
T Consensus 312 ~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 312 TYLTLYFNNISDISP-VSSLTKLQRLFFYNNK-VSDVS-SLANLTNINWLSAGHNQ 364 (466)
T ss_dssp SEEECCSSCCSCCGG-GGGCTTCCEEECCSSC-CCCCG-GGTTCTTCCEEECCSSC
T ss_pred CEEECcCCcCCCchh-hccCccCCEeECCCCc-cCCch-hhccCCCCCEEeCCCCc
Confidence 1222221 2345566666666664 44443 45566666666666665
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.77 E-value=1.8e-18 Score=162.34 Aligned_cols=215 Identities=15% Similarity=0.089 Sum_probs=107.3
Q ss_pred ccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCC-------CCceEE
Q 044597 71 IMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPA-------HPGKYS 142 (341)
Q Consensus 71 ~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~-------~i~~~~ 142 (341)
.+.++.+|++|+++ +.+..+| .+ +++++|++|++++|.+..+| ++.+++|++|+++++.+.. .++.+.
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~-~l-~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~ 112 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMT-GI-EKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLDVTPLTKLTYLN 112 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCT-TG-GGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEE
T ss_pred ChhHcCCCCEEEccCCCcccCh-hh-cccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceeecCCCCcCCEEE
Confidence 44556666666665 3555555 45 66666666666666666654 6666666666666632221 001111
Q ss_pred eCCCcchh--hhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCcccccccCCccEEEEEe
Q 044597 143 LHPCCSTE--EILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSN 220 (341)
Q Consensus 143 ~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l~~ 220 (341)
++++. +. . ++.+++|++|+++++.. ..+ .++.+++|+.|++++|. .++.++ +..+ ++|+.|++++
T Consensus 113 L~~N~-l~~l~-~~~l~~L~~L~l~~N~l---~~l--~l~~l~~L~~L~l~~n~----~~~~~~-~~~l-~~L~~L~ls~ 179 (457)
T 3bz5_A 113 CDTNK-LTKLD-VSQNPLLTYLNCARNTL---TEI--DVSHNTQLTELDCHLNK----KITKLD-VTPQ-TQLTTLDCSF 179 (457)
T ss_dssp CCSSC-CSCCC-CTTCTTCCEEECTTSCC---SCC--CCTTCTTCCEEECTTCS----CCCCCC-CTTC-TTCCEEECCS
T ss_pred CCCCc-CCeec-CCCCCcCCEEECCCCcc---cee--ccccCCcCCEEECCCCC----cccccc-cccC-CcCCEEECCC
Confidence 11110 00 1 44455555555554431 111 24455555555555442 233332 3345 5666666666
Q ss_pred ecCCCCCCccCcCCCCCCeEEEEEeCcEeeecCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCccccc
Q 044597 221 IELIDDPMPALEKLPVLQVLKLKYLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQ 300 (341)
Q Consensus 221 ~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~ 300 (341)
|.++..+ ++.+++|+.|+++.+.... ...+.+++|++|+++++ .+..++ .+.+++|+.|++++|. ++.+|
T Consensus 180 n~l~~l~---l~~l~~L~~L~l~~N~l~~-~~l~~l~~L~~L~Ls~N-~l~~ip--~~~l~~L~~L~l~~N~-l~~~~-- 249 (457)
T 3bz5_A 180 NKITELD---VSQNKLLNRLNCDTNNITK-LDLNQNIQLTFLDCSSN-KLTEID--VTPLTQLTYFDCSVNP-LTELD-- 249 (457)
T ss_dssp SCCCCCC---CTTCTTCCEEECCSSCCSC-CCCTTCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSSC-CSCCC--
T ss_pred Cccceec---cccCCCCCEEECcCCcCCe-eccccCCCCCEEECcCC-cccccC--ccccCCCCEEEeeCCc-CCCcC--
Confidence 6654322 5556666666662221111 12445666666666663 355554 4456666777666665 55554
Q ss_pred cCCCCCCcEEEE
Q 044597 301 LWCLKSLNKLEL 312 (341)
Q Consensus 301 l~~l~~L~~L~l 312 (341)
+..+++|+.|++
T Consensus 250 ~~~l~~L~~L~l 261 (457)
T 3bz5_A 250 VSTLSKLTTLHC 261 (457)
T ss_dssp CTTCTTCCEEEC
T ss_pred HHHCCCCCEEec
Confidence 233444444433
No 34
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.77 E-value=2.6e-18 Score=165.56 Aligned_cols=129 Identities=16% Similarity=0.136 Sum_probs=83.9
Q ss_pred cCCCCCCEEEEEeCCCCCCCCcc-Cc-ccccccCCccEEEEEeecCCCCC--CccCcCCCCCCeEEEEEeCcE--ee---
Q 044597 180 CRLSCLESLKLANESKMPRRSNT-IL-AEYQFPPSLTHLSFSNIELIDDP--MPALEKLPVLQVLKLKYLGRK--LA--- 250 (341)
Q Consensus 180 ~~l~~L~~L~l~~~~e~~~~l~~-lp-~~~~lp~~L~~L~l~~~~l~~~~--~~~l~~l~~L~~L~l~~~~~~--~~--- 250 (341)
+.+++|+.|++++| .+.. .| ++..+ ++|+.|++++|.++..+ ...++.+++|++|+++.+... .+
T Consensus 350 ~~l~~L~~L~l~~n-----~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 423 (562)
T 3a79_B 350 PSPSSFTFLNFTQN-----VFTDSVFQGCSTL-KRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT 423 (562)
T ss_dssp SSCCCCCEEECCSS-----CCCTTTTTTCCSC-SSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCC
T ss_pred cCCCCceEEECCCC-----ccccchhhhhccc-CCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhh
Confidence 55677777777776 4444 44 55666 66666666666654321 123555666666666111100 00
Q ss_pred -------------------ecCCCC-CcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCccccc-cCCCCCCcE
Q 044597 251 -------------------CSSDGF-PKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQ-LWCLKSLNK 309 (341)
Q Consensus 251 -------------------~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~ 309 (341)
.....+ ++|++|+++++ .++.++...+.+++|+.|++++|. ++.+|.. +..+++|+.
T Consensus 424 ~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~ 501 (562)
T 3a79_B 424 CAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQ-LKSVPDGVFDRLTSLQY 501 (562)
T ss_dssp CCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSC-CCCCCTTSTTTCTTCCC
T ss_pred hcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCC-CCCCCHHHHhcCCCCCE
Confidence 011123 57888888874 577777777788999999999988 7888887 788999999
Q ss_pred EEEecCC
Q 044597 310 LELWWPE 316 (341)
Q Consensus 310 L~l~~~~ 316 (341)
|++++||
T Consensus 502 L~l~~N~ 508 (562)
T 3a79_B 502 IWLHDNP 508 (562)
T ss_dssp EECCSCC
T ss_pred EEecCCC
Confidence 9999877
No 35
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.77 E-value=8.7e-19 Score=167.24 Aligned_cols=129 Identities=19% Similarity=0.186 Sum_probs=81.2
Q ss_pred cCCCCCCEEEEEeCCCCCCCCcc-Cc-ccccccCCccEEEEEeecCCCC--CCccCcCCCCCCeEEEEEeCcE--eee-c
Q 044597 180 CRLSCLESLKLANESKMPRRSNT-IL-AEYQFPPSLTHLSFSNIELIDD--PMPALEKLPVLQVLKLKYLGRK--LAC-S 252 (341)
Q Consensus 180 ~~l~~L~~L~l~~~~e~~~~l~~-lp-~~~~lp~~L~~L~l~~~~l~~~--~~~~l~~l~~L~~L~l~~~~~~--~~~-~ 252 (341)
..+++|+.|++++| .+.. .| ++..+ ++|+.|++++|.++.. ....++.+++|++|+++.+... ++. .
T Consensus 321 ~~l~~L~~L~Ls~n-----~l~~~~~~~~~~l-~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~ 394 (520)
T 2z7x_B 321 SKISPFLHLDFSNN-----LLTDTVFENCGHL-TELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD 394 (520)
T ss_dssp SSCCCCCEEECCSS-----CCCTTTTTTCCCC-SSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCS
T ss_pred hhCCcccEEEeECC-----ccChhhhhhhccC-CCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccch
Confidence 45677777777776 4444 44 55666 6666666666665321 1123455556666655221111 110 0
Q ss_pred CCC---------------------C-CcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCccccc-cCCCCCCcE
Q 044597 253 SDG---------------------F-PKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQ-LWCLKSLNK 309 (341)
Q Consensus 253 ~~~---------------------~-~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~ 309 (341)
... + ++|++|+++++ .+..++.....+++|+.|++++|. ++.+|.. +..+++|++
T Consensus 395 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~ 472 (520)
T 2z7x_B 395 CSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQ-LKSVPDGIFDRLTSLQK 472 (520)
T ss_dssp CCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred hccCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCCc-CCccCHHHhccCCcccE
Confidence 111 2 56777777764 466777666688999999999997 7788876 788999999
Q ss_pred EEEecCC
Q 044597 310 LELWWPE 316 (341)
Q Consensus 310 L~l~~~~ 316 (341)
|++++|+
T Consensus 473 L~l~~N~ 479 (520)
T 2z7x_B 473 IWLHTNP 479 (520)
T ss_dssp EECCSSC
T ss_pred EECcCCC
Confidence 9999876
No 36
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.77 E-value=9.9e-19 Score=167.88 Aligned_cols=62 Identities=18% Similarity=0.218 Sum_probs=41.4
Q ss_pred cccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchh-hcccccCceeeecC
Q 044597 70 PIMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADE-FWKMSKLRYLNFGA 131 (341)
Q Consensus 70 ~~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~-i~~L~~L~~L~l~~ 131 (341)
..+..+++|++|+++ +.+..+|...|+++++|++|++++|.+..+|.. ++++++|++|++++
T Consensus 44 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 107 (549)
T 2z81_A 44 GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMG 107 (549)
T ss_dssp STTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTT
T ss_pred hhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCC
Confidence 345667777777776 466666544337777777777777766666554 67777777777776
No 37
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.76 E-value=1.4e-18 Score=153.46 Aligned_cols=194 Identities=22% Similarity=0.229 Sum_probs=114.0
Q ss_pred CCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccc-hhhcccccCceeeecCcCCCCCCceEEeCCCcchh
Q 044597 73 DQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTA-DEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTE 150 (341)
Q Consensus 73 ~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp-~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~ 150 (341)
.++.+++.+++. +.++.+|..+ . +++++|++++|.+..++ ..+..+++|++|+++++.+.. ++
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~-~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------~~ 71 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDL-P--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK------------LQ 71 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCC-C--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE------------EE
T ss_pred cccCCccEEECCCCCCCcCCCCC-C--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc------------cc
Confidence 344555555555 3555666555 2 45566666666555543 345555555555555522210 11
Q ss_pred hhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc-ccccccCCccEEEEEeecCCCCCCc
Q 044597 151 EILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL-AEYQFPPSLTHLSFSNIELIDDPMP 229 (341)
Q Consensus 151 ~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp-~~~~lp~~L~~L~l~~~~l~~~~~~ 229 (341)
. . +.+++|+.|+++++ .+..+| .+..+ ++|++|++++|.++..+..
T Consensus 72 ~-~--------------------------~~l~~L~~L~Ls~N-----~l~~l~~~~~~l-~~L~~L~l~~N~l~~l~~~ 118 (290)
T 1p9a_G 72 V-D--------------------------GTLPVLGTLDLSHN-----QLQSLPLLGQTL-PALTVLDVSFNRLTSLPLG 118 (290)
T ss_dssp C-C--------------------------SCCTTCCEEECCSS-----CCSSCCCCTTTC-TTCCEEECCSSCCCCCCSS
T ss_pred C-C--------------------------CCCCcCCEEECCCC-----cCCcCchhhccC-CCCCEEECCCCcCcccCHH
Confidence 1 2 34555566666555 555555 55556 5666666666665544444
Q ss_pred cCcCCCCCCeEEEEEeC-cEee-ecCCCCCcccEEEEecCCCCCceeecC-CCCCcccEEEEecCCCCCccccccCCCCC
Q 044597 230 ALEKLPVLQVLKLKYLG-RKLA-CSSDGFPKLKVLHLKSMLWLEEWTMGI-KAMPKLECVIINPCAHLKRIPEQLWCLKS 306 (341)
Q Consensus 230 ~l~~l~~L~~L~l~~~~-~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~l~~L~~L~l~~c~~l~~lp~~l~~l~~ 306 (341)
.++.+++|++|+++.+. ...+ .....+++|+.|++++ +.+..++... ..+++|+.|++.+|. ++.+|.++...++
T Consensus 119 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~ip~~~~~~~~ 196 (290)
T 1p9a_G 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN-NNLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHL 196 (290)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT-SCCSCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCC
T ss_pred HHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC-CcCCccCHHHhcCcCCCCEEECCCCc-CCccChhhccccc
Confidence 56666666666662221 1111 1123456777777776 3466666543 458889999998887 7888888888888
Q ss_pred CcEEEEecCC
Q 044597 307 LNKLELWWPE 316 (341)
Q Consensus 307 L~~L~l~~~~ 316 (341)
|+.|++.++|
T Consensus 197 L~~l~L~~Np 206 (290)
T 1p9a_G 197 LPFAFLHGNP 206 (290)
T ss_dssp CSEEECCSCC
T ss_pred CCeEEeCCCC
Confidence 9999998876
No 38
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.76 E-value=1.3e-18 Score=162.66 Aligned_cols=203 Identities=19% Similarity=0.150 Sum_probs=164.0
Q ss_pred cccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccch-hhcccccCceeeecCcCCCCCCceEEeCCCc
Q 044597 70 PIMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTAD-EFWKMSKLRYLNFGAITLPAHPGKYSLHPCC 147 (341)
Q Consensus 70 ~~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~-~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~ 147 (341)
..+..+.+|++|+++ +.+..++...|.++++|++|+|++|.+..+|. .+..+++|++|+++++.+. ..
T Consensus 82 ~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~----------~~ 151 (440)
T 3zyj_A 82 NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE----------SI 151 (440)
T ss_dssp TTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCC----------EE
T ss_pred HHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCccc----------cc
Confidence 467889999999998 58888887666999999999999999999986 5899999999999985443 22
Q ss_pred chhhhhCCCCCCceEEEEeecchhhhHHHH-HhcCCCCCCEEEEEeCCCCCCCCccCcccccccCCccEEEEEeecCCCC
Q 044597 148 STEEILGRLPNLQNLRIWGDLSYYQSLLSK-SLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSNIELIDD 226 (341)
Q Consensus 148 ~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~-~l~~l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l~~~~l~~~ 226 (341)
+...+..+++|++|+++++. ....++. .+.++++|+.|++++| .++.+|.+..+ ++|+.|++++|.++..
T Consensus 152 -~~~~~~~l~~L~~L~l~~~~--~l~~i~~~~~~~l~~L~~L~L~~n-----~l~~~~~~~~l-~~L~~L~Ls~N~l~~~ 222 (440)
T 3zyj_A 152 -PSYAFNRIPSLRRLDLGELK--RLSYISEGAFEGLSNLRYLNLAMC-----NLREIPNLTPL-IKLDELDLSGNHLSAI 222 (440)
T ss_dssp -CTTTTTTCTTCCEEECCCCT--TCCEECTTTTTTCSSCCEEECTTS-----CCSSCCCCTTC-SSCCEEECTTSCCCEE
T ss_pred -CHHHhhhCcccCEeCCCCCC--CcceeCcchhhcccccCeecCCCC-----cCccccccCCC-cccCEEECCCCccCcc
Confidence 22228899999999999864 3333333 5788999999999999 88899977788 9999999999998777
Q ss_pred CCccCcCCCCCCeEEEEEeC-cEe-eecCCCCCcccEEEEecCCCCCceeec-CCCCCcccEEEEecCC
Q 044597 227 PMPALEKLPVLQVLKLKYLG-RKL-ACSSDGFPKLKVLHLKSMLWLEEWTMG-IKAMPKLECVIINPCA 292 (341)
Q Consensus 227 ~~~~l~~l~~L~~L~l~~~~-~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~ 292 (341)
....+..+++|+.|+++.+. ... ......+++|++|++++ +.+..++.. ...+++|+.|++.+|+
T Consensus 223 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 223 RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH-NNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTT-SCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCC-CCCCccChhHhccccCCCEEEcCCCC
Confidence 77789999999999993322 222 22356789999999998 467777644 3568999999999987
No 39
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.76 E-value=1.5e-18 Score=152.87 Aligned_cols=198 Identities=17% Similarity=0.145 Sum_probs=157.1
Q ss_pred cceeeeeccC-CCCcccChhhhhcCCCccEEecCCcccccc-chhhcccccCceeeecCcC-CCCCCceEEeCCCcchhh
Q 044597 75 EVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHT-ADEFWKMSKLRYLNFGAIT-LPAHPGKYSLHPCCSTEE 151 (341)
Q Consensus 75 l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~l-p~~i~~L~~L~~L~l~~~~-lp~~i~~~~~~~~~~~~~ 151 (341)
..+++.|+++ +.+..+|...|+++++|++|++++|.+..+ |..+..+++|++|+++++. +. ...+..
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~----------~~~~~~ 100 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR----------SVDPAT 100 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC----------CCCTTT
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcc----------ccCHHH
Confidence 3578999998 588888876559999999999999988887 6789999999999999843 32 220344
Q ss_pred hhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCCCCc
Q 044597 152 ILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDDPMP 229 (341)
Q Consensus 152 ~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~~ 229 (341)
++.+++|++|+++++.. ....+..+..+++|+.|+++++ .++.+| .+..+ ++|++|++++|.++..+..
T Consensus 101 -~~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n-----~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~ 171 (285)
T 1ozn_A 101 -FHGLGRLHTLHLDRCGL--QELGPGLFRGLAALQYLYLQDN-----ALQALPDDTFRDL-GNLTHLFLHGNRISSVPER 171 (285)
T ss_dssp -TTTCTTCCEEECTTSCC--CCCCTTTTTTCTTCCEEECCSS-----CCCCCCTTTTTTC-TTCCEEECCSSCCCEECTT
T ss_pred -hcCCcCCCEEECCCCcC--CEECHhHhhCCcCCCEEECCCC-----cccccCHhHhccC-CCccEEECCCCcccccCHH
Confidence 88999999999998852 2223456888999999999998 788887 57889 9999999999998666666
Q ss_pred cCcCCCCCCeEEEEEeC-cEe-eecCCCCCcccEEEEecCCCCCceeec-CCCCCcccEEEEecCC
Q 044597 230 ALEKLPVLQVLKLKYLG-RKL-ACSSDGFPKLKVLHLKSMLWLEEWTMG-IKAMPKLECVIINPCA 292 (341)
Q Consensus 230 ~l~~l~~L~~L~l~~~~-~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~ 292 (341)
.+..+++|++|+++.+. ... +.....+++|++|+++++ .+..++.. ...+++|+.|++.+|+
T Consensus 172 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred HhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCC
Confidence 78999999999993332 222 334567899999999984 56666633 5679999999999998
No 40
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.76 E-value=3.4e-18 Score=166.08 Aligned_cols=121 Identities=13% Similarity=0.035 Sum_probs=74.6
Q ss_pred cccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCcccccc-chhhcccccCceeeecCcCCCC----C------
Q 044597 70 PIMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHT-ADEFWKMSKLRYLNFGAITLPA----H------ 137 (341)
Q Consensus 70 ~~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~l-p~~i~~L~~L~~L~l~~~~lp~----~------ 137 (341)
..+.++++|++|+++ +.+..++...|+++++|++|++++|.+..+ |..++.+++|++|+++++.+.. .
T Consensus 51 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~ 130 (606)
T 3t6q_A 51 TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT 130 (606)
T ss_dssp TTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTT
T ss_pred hHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCc
Confidence 356777778888887 456666433337888888888888766655 5567777888888777732221 1
Q ss_pred CceEEeCCCc----chhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCC--EEEEEeC
Q 044597 138 PGKYSLHPCC----STEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLE--SLKLANE 193 (341)
Q Consensus 138 i~~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~--~L~l~~~ 193 (341)
++.+.++++. .++. +..+++|++|+++++.. ....+..++.+++|+ .|++++|
T Consensus 131 L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~l~L~l~~n 189 (606)
T 3t6q_A 131 LESLYLGSNHISSIKLPK-GFPTEKLKVLDFQNNAI--HYLSKEDMSSLQQATNLSLNLNGN 189 (606)
T ss_dssp CCEEECCSSCCCCCCCCT-TCCCTTCCEEECCSSCC--CEECHHHHHTTTTCCSEEEECTTC
T ss_pred ccEEECCCCcccccCccc-ccCCcccCEEEcccCcc--cccChhhhhhhcccceeEEecCCC
Confidence 1555555421 1244 45578888888887752 222245566777777 5555554
No 41
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.75 E-value=7.9e-19 Score=158.06 Aligned_cols=231 Identities=14% Similarity=0.108 Sum_probs=167.2
Q ss_pred cccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecC---cCCCCCC-------
Q 044597 70 PIMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGA---ITLPAHP------- 138 (341)
Q Consensus 70 ~~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~---~~lp~~i------- 138 (341)
..+..+.+|++|+++ +.+..++...|+++++|++|++++|.+..+|..+. ++|++|++++ ..+|...
T Consensus 72 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L 149 (332)
T 2ft3_A 72 DDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNM 149 (332)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSC
T ss_pred hHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccC
Confidence 357788889999887 57777744433889999999999888888887665 7888888877 3333321
Q ss_pred ceEEeCCCc------chhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc--cccccc
Q 044597 139 GKYSLHPCC------STEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL--AEYQFP 210 (341)
Q Consensus 139 ~~~~~~~~~------~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp 210 (341)
+.+.++++. .+.. ++.+ +|++|+++++. ...+|..+. ++|+.|++++| .+..++ .+..+
T Consensus 150 ~~L~l~~n~l~~~~~~~~~-~~~l-~L~~L~l~~n~---l~~l~~~~~--~~L~~L~l~~n-----~i~~~~~~~l~~l- 216 (332)
T 2ft3_A 150 NCIEMGGNPLENSGFEPGA-FDGL-KLNYLRISEAK---LTGIPKDLP--ETLNELHLDHN-----KIQAIELEDLLRY- 216 (332)
T ss_dssp CEEECCSCCCBGGGSCTTS-SCSC-CCSCCBCCSSB---CSSCCSSSC--SSCSCCBCCSS-----CCCCCCTTSSTTC-
T ss_pred CEEECCCCccccCCCCccc-ccCC-ccCEEECcCCC---CCccCcccc--CCCCEEECCCC-----cCCccCHHHhcCC-
Confidence 555555422 0223 6666 89999999885 334544433 79999999998 777776 78889
Q ss_pred CCccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeC-cEeeecCCCCCcccEEEEecCCCCCceeecC-------CCCCc
Q 044597 211 PSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLG-RKLACSSDGFPKLKVLHLKSMLWLEEWTMGI-------KAMPK 282 (341)
Q Consensus 211 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-------~~l~~ 282 (341)
++|+.|++++|.+.......++.+++|++|+++.+. ..++.....+++|++|++++ +.++.++... ..+++
T Consensus 217 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~~~~~~~ 295 (332)
T 2ft3_A 217 SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHT-NNITKVGVNDFCPVGFGVKRAY 295 (332)
T ss_dssp TTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCS-SCCCBCCTTSSSCSSCCSSSCC
T ss_pred CCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCC-CCCCccChhHcccccccccccc
Confidence 999999999999877666679999999999993332 33444456789999999998 4576665332 12578
Q ss_pred ccEEEEecCCCC--CccccccCCCCCCcEEEEecCC
Q 044597 283 LECVIINPCAHL--KRIPEQLWCLKSLNKLELWWPE 316 (341)
Q Consensus 283 L~~L~l~~c~~l--~~lp~~l~~l~~L~~L~l~~~~ 316 (341)
|+.|.+.+|+.. ...|..+..+++|+.+++++|.
T Consensus 296 l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 296 YNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp BSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 999999999943 2345667889999999999875
No 42
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.75 E-value=7.1e-19 Score=156.45 Aligned_cols=214 Identities=19% Similarity=0.190 Sum_probs=169.2
Q ss_pred eeccC-CCCcccChhhhhcCCCccEEecCCccccccchh-hcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCC
Q 044597 80 ENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADE-FWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLP 157 (341)
Q Consensus 80 ~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~-i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~ 157 (341)
.++.+ ..++.+|..+ . ++|++|++++|.+..+|.. +.++++|++|+++++.+.. . +.. +.. +..++
T Consensus 11 ~l~c~~~~l~~ip~~~-~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~----~---~~~-~~~-~~~~~ 78 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGI-P--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF----K---GCC-SQS-DFGTT 78 (306)
T ss_dssp EEECCSSCCSSCCSCC-C--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCE----E---EEE-EHH-HHSCS
T ss_pred EEEcCCCCcccCCCCC-C--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCc----c---cCc-ccc-ccccc
Confidence 45555 4788999877 3 6899999999999999876 6899999999999844421 0 011 234 66799
Q ss_pred CCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc---ccccccCCccEEEEEeecCCCCCCccCcCC
Q 044597 158 NLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL---AEYQFPPSLTHLSFSNIELIDDPMPALEKL 234 (341)
Q Consensus 158 ~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp---~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l 234 (341)
+|++|+++++. ...++..+..+++|+.|+++++ .+..++ .+..+ ++|++|++++|.+.......++.+
T Consensus 79 ~L~~L~Ls~n~---i~~l~~~~~~l~~L~~L~l~~n-----~l~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l 149 (306)
T 2z66_A 79 SLKYLDLSFNG---VITMSSNFLGLEQLEHLDFQHS-----NLKQMSEFSVFLSL-RNLIYLDISHTHTRVAFNGIFNGL 149 (306)
T ss_dssp CCCEEECCSCS---EEEEEEEEETCTTCCEEECTTS-----EEESSTTTTTTTTC-TTCCEEECTTSCCEECSTTTTTTC
T ss_pred ccCEEECCCCc---cccChhhcCCCCCCCEEECCCC-----cccccccchhhhhc-cCCCEEECCCCcCCccchhhcccC
Confidence 99999999984 4456667889999999999998 777765 46788 999999999999866666778999
Q ss_pred CCCCeEEEEEe---CcEeeecCCCCCcccEEEEecCCCCCce-eecCCCCCcccEEEEecCCCCCcccc-ccCCCCCCcE
Q 044597 235 PVLQVLKLKYL---GRKLACSSDGFPKLKVLHLKSMLWLEEW-TMGIKAMPKLECVIINPCAHLKRIPE-QLWCLKSLNK 309 (341)
Q Consensus 235 ~~L~~L~l~~~---~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~ 309 (341)
++|++|+++.+ +...+.....+++|++|+++++ .+..+ +...+.+++|+.|++++|. +..++. .+..+++|++
T Consensus 150 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~ 227 (306)
T 2z66_A 150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQV 227 (306)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCE
T ss_pred cCCCEEECCCCccccccchhHHhhCcCCCEEECCCC-CcCCcCHHHhcCCCCCCEEECCCCc-cCccChhhccCcccCCE
Confidence 99999999222 2234455678999999999985 46666 3456679999999999998 666654 6788999999
Q ss_pred EEEecCC
Q 044597 310 LELWWPE 316 (341)
Q Consensus 310 L~l~~~~ 316 (341)
|++++|.
T Consensus 228 L~L~~N~ 234 (306)
T 2z66_A 228 LDYSLNH 234 (306)
T ss_dssp EECTTSC
T ss_pred eECCCCC
Confidence 9999987
No 43
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.75 E-value=2e-18 Score=153.84 Aligned_cols=198 Identities=19% Similarity=0.199 Sum_probs=153.4
Q ss_pred ccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcch
Q 044597 71 IMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCST 149 (341)
Q Consensus 71 ~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~ 149 (341)
....+.+|+.|++. +.+..+| .+ ..+++|++|++++|.+..+|. +..+++|++|+++++.+.. +
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~l~-~~-~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~------------~ 100 (308)
T 1h6u_A 36 TQADLDGITTLSAFGTGVTTIE-GV-QYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN------------V 100 (308)
T ss_dssp CHHHHHTCCEEECTTSCCCCCT-TG-GGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC------------C
T ss_pred cHHHcCCcCEEEeeCCCccCch-hh-hccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCC------------c
Confidence 34457889999998 5788887 57 999999999999999999987 9999999999999855542 5
Q ss_pred hhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCcccccccCCccEEEEEeecCCCCCCc
Q 044597 150 EEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSNIELIDDPMP 229 (341)
Q Consensus 150 ~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l~~~~l~~~~~~ 229 (341)
+. ++.+++|++|+++++... .++ .+..+++|+.|++++| .+..++.+..+ ++|+.|++++|.++. ++
T Consensus 101 ~~-~~~l~~L~~L~l~~n~l~---~~~-~l~~l~~L~~L~l~~n-----~l~~~~~l~~l-~~L~~L~l~~n~l~~--~~ 167 (308)
T 1h6u_A 101 SA-IAGLQSIKTLDLTSTQIT---DVT-PLAGLSNLQVLYLDLN-----QITNISPLAGL-TNLQYLSIGNAQVSD--LT 167 (308)
T ss_dssp GG-GTTCTTCCEEECTTSCCC---CCG-GGTTCTTCCEEECCSS-----CCCCCGGGGGC-TTCCEEECCSSCCCC--CG
T ss_pred hh-hcCCCCCCEEECCCCCCC---Cch-hhcCCCCCCEEECCCC-----ccCcCccccCC-CCccEEEccCCcCCC--Ch
Confidence 56 899999999999988633 333 3889999999999998 77777766778 899999999998744 33
Q ss_pred cCcCCCCCCeEEEEEeCcEeeecCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCcccc
Q 044597 230 ALEKLPVLQVLKLKYLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPE 299 (341)
Q Consensus 230 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~ 299 (341)
.+..+++|+.|+++.+..........+++|++|+++++ .+..++ ....+++|+.|++.+|+ +...|.
T Consensus 168 ~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N-~l~~~~-~l~~l~~L~~L~l~~N~-i~~~~~ 234 (308)
T 1h6u_A 168 PLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNN-QISDVS-PLANTSNLFIVTLTNQT-ITNQPV 234 (308)
T ss_dssp GGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTS-CCCBCG-GGTTCTTCCEEEEEEEE-EECCCE
T ss_pred hhcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCC-ccCccc-cccCCCCCCEEEccCCe-eecCCe
Confidence 48889999999994333222222556788888888874 455555 35678888888888887 555553
No 44
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.75 E-value=1.4e-17 Score=158.95 Aligned_cols=107 Identities=16% Similarity=0.094 Sum_probs=70.1
Q ss_pred cccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcc
Q 044597 70 PIMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCS 148 (341)
Q Consensus 70 ~~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~ 148 (341)
..+..+++|++|+++ +.+..++...|+++++|++|++++|.+..+|.. .+++|++|+++++.+.. -..
T Consensus 39 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~--------~~~- 107 (520)
T 2z7x_B 39 SDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDA--------LPI- 107 (520)
T ss_dssp HHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSS--------CCC-
T ss_pred hhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEeccCCcccc--------ccc-
Confidence 356777888888887 477776433338888888888888888888776 78888888888733321 011
Q ss_pred hhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCC--CEEEEEeC
Q 044597 149 TEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCL--ESLKLANE 193 (341)
Q Consensus 149 ~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L--~~L~l~~~ 193 (341)
+.. ++++++|++|+++++.... ..+..+++| +.|++++|
T Consensus 108 p~~-~~~l~~L~~L~L~~n~l~~-----~~~~~l~~L~L~~L~l~~n 148 (520)
T 2z7x_B 108 CKE-FGNMSQLKFLGLSTTHLEK-----SSVLPIAHLNISKVLLVLG 148 (520)
T ss_dssp CGG-GGGCTTCCEEEEEESSCCG-----GGGGGGTTSCEEEEEEEEC
T ss_pred hhh-hccCCcceEEEecCcccch-----hhccccccceeeEEEeecc
Confidence 334 7777777777777765211 234445555 66666665
No 45
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.75 E-value=2.3e-18 Score=153.43 Aligned_cols=143 Identities=19% Similarity=0.241 Sum_probs=63.2
Q ss_pred cCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchh
Q 044597 72 MDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTE 150 (341)
Q Consensus 72 ~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~ 150 (341)
+..+.+|++|+++ +.+..+|. + +++++|++|++++|.+..+| .+..+++|++|+++++.+.. ++
T Consensus 59 ~~~l~~L~~L~L~~n~i~~~~~-~-~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~------------~~ 123 (308)
T 1h6u_A 59 VQYLNNLIGLELKDNQITDLAP-L-KNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITD------------VT 123 (308)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-G-TTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCC------------CG
T ss_pred hhccCCCCEEEccCCcCCCChh-H-ccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCCCC------------ch
Confidence 3444445555554 34444444 3 45555555555555444443 34445555555554432221 22
Q ss_pred hhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCcccccccCCccEEEEEeecCCCCCCcc
Q 044597 151 EILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSNIELIDDPMPA 230 (341)
Q Consensus 151 ~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l~~~~l~~~~~~~ 230 (341)
. ++.+++|++|+++++... .++. ++.+++|+.|++++| .+..++.+..+ ++|+.|++++|.++. ++.
T Consensus 124 ~-l~~l~~L~~L~l~~n~l~---~~~~-l~~l~~L~~L~l~~n-----~l~~~~~l~~l-~~L~~L~l~~n~l~~--~~~ 190 (308)
T 1h6u_A 124 P-LAGLSNLQVLYLDLNQIT---NISP-LAGLTNLQYLSIGNA-----QVSDLTPLANL-SKLTTLKADDNKISD--ISP 190 (308)
T ss_dssp G-GTTCTTCCEEECCSSCCC---CCGG-GGGCTTCCEEECCSS-----CCCCCGGGTTC-TTCCEEECCSSCCCC--CGG
T ss_pred h-hcCCCCCCEEECCCCccC---cCcc-ccCCCCccEEEccCC-----cCCCChhhcCC-CCCCEEECCCCccCc--Chh
Confidence 3 444555555555444311 1111 444455555555444 44444333344 445555555554422 122
Q ss_pred CcCCCCCCeEEE
Q 044597 231 LEKLPVLQVLKL 242 (341)
Q Consensus 231 l~~l~~L~~L~l 242 (341)
+..+++|++|++
T Consensus 191 l~~l~~L~~L~L 202 (308)
T 1h6u_A 191 LASLPNLIEVHL 202 (308)
T ss_dssp GGGCTTCCEEEC
T ss_pred hcCCCCCCEEEc
Confidence 444455555554
No 46
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.75 E-value=2.2e-18 Score=161.72 Aligned_cols=204 Identities=17% Similarity=0.133 Sum_probs=164.0
Q ss_pred ccccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchh-hcccccCceeeecCcCCCCCCceEEeCCC
Q 044597 69 SPIMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADE-FWKMSKLRYLNFGAITLPAHPGKYSLHPC 146 (341)
Q Consensus 69 ~~~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~-i~~L~~L~~L~l~~~~lp~~i~~~~~~~~ 146 (341)
...+..+.+|++|+++ +.+..++...|+++++|++|+|++|.+..+|.. +..+++|++|+++++.+. .
T Consensus 92 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~----------~ 161 (452)
T 3zyi_A 92 ADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE----------S 161 (452)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC----------E
T ss_pred HHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcc----------e
Confidence 3467889999999998 588888866669999999999999999999865 789999999999985443 2
Q ss_pred cchhhhhCCCCCCceEEEEeecchhhhHHHH-HhcCCCCCCEEEEEeCCCCCCCCccCcccccccCCccEEEEEeecCCC
Q 044597 147 CSTEEILGRLPNLQNLRIWGDLSYYQSLLSK-SLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSNIELID 225 (341)
Q Consensus 147 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~-~l~~l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l~~~~l~~ 225 (341)
. +...+.++++|++|+++++. ....++. .+..+++|+.|++++| .+..+|.+..+ ++|+.|++++|.+..
T Consensus 162 ~-~~~~~~~l~~L~~L~l~~~~--~l~~i~~~~~~~l~~L~~L~L~~n-----~l~~~~~~~~l-~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 162 I-PSYAFNRVPSLMRLDLGELK--KLEYISEGAFEGLFNLKYLNLGMC-----NIKDMPNLTPL-VGLEELEMSGNHFPE 232 (452)
T ss_dssp E-CTTTTTTCTTCCEEECCCCT--TCCEECTTTTTTCTTCCEEECTTS-----CCSSCCCCTTC-TTCCEEECTTSCCSE
T ss_pred e-CHhHHhcCCcccEEeCCCCC--CccccChhhccCCCCCCEEECCCC-----ccccccccccc-ccccEEECcCCcCcc
Confidence 2 22228899999999999864 3334433 4788999999999998 88888877788 999999999999877
Q ss_pred CCCccCcCCCCCCeEEEEEeC-cEe-eecCCCCCcccEEEEecCCCCCceeec-CCCCCcccEEEEecCC
Q 044597 226 DPMPALEKLPVLQVLKLKYLG-RKL-ACSSDGFPKLKVLHLKSMLWLEEWTMG-IKAMPKLECVIINPCA 292 (341)
Q Consensus 226 ~~~~~l~~l~~L~~L~l~~~~-~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~ 292 (341)
.....+..+++|+.|+++.+. ... ......+++|++|+++++ .+..++.. ...+++|+.|++.+|+
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 777789999999999993322 222 233567899999999984 67777644 3568999999999987
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.75 E-value=3.6e-18 Score=153.55 Aligned_cols=224 Identities=19% Similarity=0.181 Sum_probs=146.7
Q ss_pred cceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccch-hhcccccCceeeecCcCCC----CCC------ceEE
Q 044597 75 EVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTAD-EFWKMSKLRYLNFGAITLP----AHP------GKYS 142 (341)
Q Consensus 75 l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~-~i~~L~~L~~L~l~~~~lp----~~i------~~~~ 142 (341)
..+++++++. ..+..+|..+ . ++|++|++++|.+..+|. .+.++++|++|+++++.+. ..+ +.+.
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~-~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDL-P--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSC-C--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred cCCCeEEEecCCCccccCccC-C--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 3478889987 4888999877 3 689999999999999876 6899999999999984332 222 3344
Q ss_pred eCCCcchhhhh--CCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCcc---Cc-ccccccCCccEE
Q 044597 143 LHPCCSTEEIL--GRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNT---IL-AEYQFPPSLTHL 216 (341)
Q Consensus 143 ~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~---lp-~~~~lp~~L~~L 216 (341)
++++. +.+ + .-.++|++|+++++.. ....+..+..+++|+.|+++++ .+.. .+ .+..+ ++|++|
T Consensus 107 Ls~n~-l~~-l~~~~~~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n-----~l~~~~~~~~~~~~l-~~L~~L 176 (330)
T 1xku_A 107 LSKNQ-LKE-LPEKMPKTLQELRVHENEI--TKVRKSVFNGLNQMIVVELGTN-----PLKSSGIENGAFQGM-KKLSYI 176 (330)
T ss_dssp CCSSC-CSB-CCSSCCTTCCEEECCSSCC--CBBCHHHHTTCTTCCEEECCSS-----CCCGGGBCTTGGGGC-TTCCEE
T ss_pred CCCCc-CCc-cChhhcccccEEECCCCcc--cccCHhHhcCCccccEEECCCC-----cCCccCcChhhccCC-CCcCEE
Confidence 43321 111 1 0113455555554431 1122234666777777777665 4432 23 55666 777777
Q ss_pred EEEeecCCCCCCccCcCCCCCCeEEEEEeC-cEe-eecCCCCCcccEEEEecCCCCCceee-cCCCCCcccEEEEecCCC
Q 044597 217 SFSNIELIDDPMPALEKLPVLQVLKLKYLG-RKL-ACSSDGFPKLKVLHLKSMLWLEEWTM-GIKAMPKLECVIINPCAH 293 (341)
Q Consensus 217 ~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~-~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~c~~ 293 (341)
++++|.++..+. .+ .++|++|+++.+. ... +.....+++|++|+++++ .+..++. ..+.+++|+.|++++|.
T Consensus 177 ~l~~n~l~~l~~-~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~- 251 (330)
T 1xku_A 177 RIADTNITTIPQ-GL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNNK- 251 (330)
T ss_dssp ECCSSCCCSCCS-SC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSSC-
T ss_pred ECCCCccccCCc-cc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC-cCceeChhhccCCCCCCEEECCCCc-
Confidence 777777543222 11 2677777772222 112 233456788999998874 4555553 45578899999999997
Q ss_pred CCccccccCCCCCCcEEEEecCC
Q 044597 294 LKRIPEQLWCLKSLNKLELWWPE 316 (341)
Q Consensus 294 l~~lp~~l~~l~~L~~L~l~~~~ 316 (341)
+..+|.++..+++|++|++++|+
T Consensus 252 l~~lp~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 252 LVKVPGGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp CSSCCTTTTTCSSCCEEECCSSC
T ss_pred CccCChhhccCCCcCEEECCCCc
Confidence 77899888889999999999987
No 48
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.75 E-value=1.5e-18 Score=168.71 Aligned_cols=199 Identities=15% Similarity=0.087 Sum_probs=147.6
Q ss_pred hcCCCccEEecCCcccccc---chhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEEEeecchhh
Q 044597 96 SSLLNLYTLEMPFSYIDHT---ADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQ 172 (341)
Q Consensus 96 ~~L~~L~~L~Ls~~~~~~l---p~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 172 (341)
+.+++|++|++++|.+..+ |..+..+++|++|+++++.+. .. +.. ++.+++|++|+++++.. .
T Consensus 347 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~----------~~-~~~-~~~l~~L~~L~l~~n~l--~ 412 (606)
T 3vq2_A 347 VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI----------IM-SAN-FMGLEELQHLDFQHSTL--K 412 (606)
T ss_dssp CCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE----------EE-CCC-CTTCTTCCEEECTTSEE--E
T ss_pred ccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc----------cc-hhh-ccCCCCCCeeECCCCcc--C
Confidence 5666666666666655544 566666777777777662221 22 334 88899999999998852 2
Q ss_pred hHHH-HHhcCCCCCCEEEEEeCCCCCCCCcc-Cc-ccccccCCccEEEEEeecCCCC-CCccCcCCCCCCeEEEEEeC-c
Q 044597 173 SLLS-KSLCRLSCLESLKLANESKMPRRSNT-IL-AEYQFPPSLTHLSFSNIELIDD-PMPALEKLPVLQVLKLKYLG-R 247 (341)
Q Consensus 173 ~~l~-~~l~~l~~L~~L~l~~~~e~~~~l~~-lp-~~~~lp~~L~~L~l~~~~l~~~-~~~~l~~l~~L~~L~l~~~~-~ 247 (341)
...+ ..+..+++|+.|++++| .+.. .| .+..+ ++|++|++++|.+... ....++.+++|++|+++.+. .
T Consensus 413 ~~~~~~~~~~l~~L~~L~l~~n-----~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 486 (606)
T 3vq2_A 413 RVTEFSAFLSLEKLLYLDISYT-----NTKIDFDGIFLGL-TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE 486 (606)
T ss_dssp STTTTTTTTTCTTCCEEECTTS-----CCEECCTTTTTTC-TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC
T ss_pred CccChhhhhccccCCEEECcCC-----CCCccchhhhcCC-CCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCC
Confidence 2223 46788999999999998 5555 55 78889 9999999999997653 45578999999999993332 2
Q ss_pred Ee-eecCCCCCcccEEEEecCCCCCce-eecCCCCCcccEEEEecCCCCCccccccCCCC-CCcEEEEecCC
Q 044597 248 KL-ACSSDGFPKLKVLHLKSMLWLEEW-TMGIKAMPKLECVIINPCAHLKRIPEQLWCLK-SLNKLELWWPE 316 (341)
Q Consensus 248 ~~-~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~-~L~~L~l~~~~ 316 (341)
.. +.....+++|++|+++++. +..+ +...+.+++|++|++++|. ++.+|..+..++ +|++|++++||
T Consensus 487 ~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 487 QISWGVFDTLHRLQLLNMSHNN-LLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp EECTTTTTTCTTCCEEECCSSC-CSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCC
T ss_pred ccChhhhcccccCCEEECCCCc-CCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCC
Confidence 22 2345678999999999964 5555 5667789999999999998 889998888887 59999999976
No 49
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.75 E-value=2.2e-18 Score=151.05 Aligned_cols=199 Identities=20% Similarity=0.194 Sum_probs=102.9
Q ss_pred eeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccch-hhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhC
Q 044597 77 RLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTAD-EFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILG 154 (341)
Q Consensus 77 ~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~-~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~ 154 (341)
.+++|+++ +.+..+|...|+++++|++|++++|.+..++. .+..+++|++|+++++.+. ...+.. ++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~----------~~~~~~-~~ 97 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ----------SLALGA-FS 97 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC----------EECTTT-TT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC----------ccChhh-hc
Confidence 45566665 35555555333666666666666665555543 4555666666666553222 110222 55
Q ss_pred CCCCCceEEEEeecchhhhHHHH-HhcCCCCCCEEEEEeCCCCCCCCcc--Cc-ccccccCCccEEEEEeecCCCCCCcc
Q 044597 155 RLPNLQNLRIWGDLSYYQSLLSK-SLCRLSCLESLKLANESKMPRRSNT--IL-AEYQFPPSLTHLSFSNIELIDDPMPA 230 (341)
Q Consensus 155 ~l~~L~~L~l~~~~~~~~~~l~~-~l~~l~~L~~L~l~~~~e~~~~l~~--lp-~~~~lp~~L~~L~l~~~~l~~~~~~~ 230 (341)
++++|++|+++++. ...++. .++.+++|+.|+++++ .++. +| ++..+ ++|++|++++|.++......
T Consensus 98 ~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n-----~l~~~~l~~~~~~l-~~L~~L~Ls~N~l~~~~~~~ 168 (276)
T 2z62_A 98 GLSSLQKLVAVETN---LASLENFPIGHLKTLKELNVAHN-----LIQSFKLPEYFSNL-TNLEHLDLSSNKIQSIYCTD 168 (276)
T ss_dssp TCTTCCEEECTTSC---CCCSTTCCCTTCTTCCEEECCSS-----CCCCCCCCGGGGGC-TTCCEEECCSSCCCEECGGG
T ss_pred CCccccEEECCCCC---ccccCchhcccCCCCCEEECcCC-----ccceecCchhhccC-CCCCEEECCCCCCCcCCHHH
Confidence 55555555555543 111111 2445555555555554 4433 34 44555 55555555555543333333
Q ss_pred CcCCCCCCeEEEEEeCcEeeecCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCccccc-cCCCCCCcE
Q 044597 231 LEKLPVLQVLKLKYLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQ-LWCLKSLNK 309 (341)
Q Consensus 231 l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~ 309 (341)
+..+++|+.+.+ +|++++ +.+..++.......+|+.|++++|. ++.+|.. +.++++|+.
T Consensus 169 ~~~l~~L~~l~l------------------~L~ls~-n~l~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 228 (276)
T 2z62_A 169 LRVLHQMPLLNL------------------SLDLSL-NPMNFIQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQK 228 (276)
T ss_dssp GHHHHTCTTCCE------------------EEECCS-SCCCEECTTSSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCE
T ss_pred hhhhhhccccce------------------eeecCC-CcccccCccccCCCcccEEECCCCc-eeecCHhHhcccccccE
Confidence 333333332111 455554 3455555444445577777777777 6666654 366777888
Q ss_pred EEEecC
Q 044597 310 LELWWP 315 (341)
Q Consensus 310 L~l~~~ 315 (341)
|++++|
T Consensus 229 L~l~~N 234 (276)
T 2z62_A 229 IWLHTN 234 (276)
T ss_dssp EECCSS
T ss_pred EEccCC
Confidence 887753
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.74 E-value=2.2e-18 Score=156.45 Aligned_cols=220 Identities=16% Similarity=0.164 Sum_probs=164.9
Q ss_pred ceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccc-hhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhh
Q 044597 76 VRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTA-DEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEIL 153 (341)
Q Consensus 76 ~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp-~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l 153 (341)
.++++|+++ +.+..+|...|+++++|++|++++|.+..++ ..+.++++|++|+++++.+. .. ++..+
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~----------~~-~~~~~ 120 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS----------NL-SSSWF 120 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS----------SC-CHHHH
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC----------cC-CHhHh
Confidence 478999998 5888888754599999999999999888874 56899999999999985443 22 33338
Q ss_pred CCCCCCceEEEEeecchhhhHHHH--HhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCCCCc
Q 044597 154 GRLPNLQNLRIWGDLSYYQSLLSK--SLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDDPMP 229 (341)
Q Consensus 154 ~~l~~L~~L~l~~~~~~~~~~l~~--~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~~ 229 (341)
+.+++|++|+++++. ...++. .+..+++|+.|++++|. .++.++ .+..+ ++|++|++++|.+......
T Consensus 121 ~~l~~L~~L~L~~n~---l~~l~~~~~~~~l~~L~~L~l~~n~----~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~ 192 (353)
T 2z80_A 121 KPLSSLTFLNLLGNP---YKTLGETSLFSHLTKLQILRVGNMD----TFTKIQRKDFAGL-TFLEELEIDASDLQSYEPK 192 (353)
T ss_dssp TTCTTCSEEECTTCC---CSSSCSSCSCTTCTTCCEEEEEESS----SCCEECTTTTTTC-CEEEEEEEEETTCCEECTT
T ss_pred CCCccCCEEECCCCC---CcccCchhhhccCCCCcEEECCCCc----cccccCHHHccCC-CCCCEEECCCCCcCccCHH
Confidence 899999999999884 445554 57889999999999975 567765 67788 8999999999998766677
Q ss_pred cCcCCCCCCeEEEEEeCcE-eee-cCCCCCcccEEEEecCCCCCceeec----CCCCCcccEEEEecCCCCC-----ccc
Q 044597 230 ALEKLPVLQVLKLKYLGRK-LAC-SSDGFPKLKVLHLKSMLWLEEWTMG----IKAMPKLECVIINPCAHLK-----RIP 298 (341)
Q Consensus 230 ~l~~l~~L~~L~l~~~~~~-~~~-~~~~~~~L~~L~l~~~~~l~~~~~~----~~~l~~L~~L~l~~c~~l~-----~lp 298 (341)
.++.+++|++|+++.+... .+. ....+++|++|+++++ .+..++.. ....+.++.+.+.++. +. .+|
T Consensus 193 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~~~~~~l~~l~L~~~~-l~~~~l~~l~ 270 (353)
T 2z80_A 193 SLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT-DLDTFHFSELSTGETNSLIKKFTFRNVK-ITDESLFQVM 270 (353)
T ss_dssp TTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESC-BCTTCCCC------CCCCCCEEEEESCB-CCHHHHHHHH
T ss_pred HHhccccCCeecCCCCccccchhhhhhhcccccEEECCCC-ccccccccccccccccchhhcccccccc-ccCcchhhhH
Confidence 8889999999999443311 111 1224789999999984 34444321 1235667888888776 33 367
Q ss_pred cccCCCCCCcEEEEecCC
Q 044597 299 EQLWCLKSLNKLELWWPE 316 (341)
Q Consensus 299 ~~l~~l~~L~~L~l~~~~ 316 (341)
..+.++++|++|++++|.
T Consensus 271 ~~l~~l~~L~~L~Ls~N~ 288 (353)
T 2z80_A 271 KLLNQISGLLELEFSRNQ 288 (353)
T ss_dssp HHHHTCTTCCEEECCSSC
T ss_pred HHHhcccCCCEEECCCCC
Confidence 778889999999999986
No 51
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.74 E-value=1.9e-18 Score=167.87 Aligned_cols=230 Identities=15% Similarity=0.082 Sum_probs=158.1
Q ss_pred cCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCC--------CCCceEE
Q 044597 72 MDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLP--------AHPGKYS 142 (341)
Q Consensus 72 ~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp--------~~i~~~~ 142 (341)
+..+.+|+.|++. +.+..+| .+ ..+++|++|++++|.+..+| .+ .+++|++|+++++..- +.++.+.
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l~-~l-~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ 356 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYLE-DV-PKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSISFKKVALPSLSYLD 356 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCCC-CC-CTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCEECCCCCCTTCCEEE
T ss_pred cccCCCCCEEEecCccchhhh-hc-cccccCCEEEcccccCcccc-cC-CCCccceeeccCCcCccchhhccCCCCCEEE
Confidence 5667788888887 4777888 66 88899999999999888888 45 8888888888873111 1114444
Q ss_pred eCCCc------chhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc---ccccccCCc
Q 044597 143 LHPCC------STEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL---AEYQFPPSL 213 (341)
Q Consensus 143 ~~~~~------~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp---~~~~lp~~L 213 (341)
++++. .+.. ++.+++|++|+++++. ...+|..+..+++|+.|++++| .+...+ .+..+ ++|
T Consensus 357 ls~n~l~~~~~~~~~-~~~~~~L~~L~L~~n~---l~~~~~~~~~l~~L~~L~l~~n-----~l~~~~~~~~~~~l-~~L 426 (606)
T 3vq2_A 357 LSRNALSFSGCCSYS-DLGTNSLRHLDLSFNG---AIIMSANFMGLEELQHLDFQHS-----TLKRVTEFSAFLSL-EKL 426 (606)
T ss_dssp CCSSCEEEEEECCHH-HHCCSCCCEEECCSCS---EEEECCCCTTCTTCCEEECTTS-----EEESTTTTTTTTTC-TTC
T ss_pred CcCCccCCCcchhhh-hccCCcccEeECCCCc---cccchhhccCCCCCCeeECCCC-----ccCCccChhhhhcc-ccC
Confidence 44321 0223 5667777777777663 3334455667777777777776 444442 45667 788
Q ss_pred cEEEEEeecCCCCCCccCcCCCCCCeEEEEE---eCcEeeecCCCCCcccEEEEecCCCCCcee-ecCCCCCcccEEEEe
Q 044597 214 THLSFSNIELIDDPMPALEKLPVLQVLKLKY---LGRKLACSSDGFPKLKVLHLKSMLWLEEWT-MGIKAMPKLECVIIN 289 (341)
Q Consensus 214 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~---~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~ 289 (341)
++|++++|.+.......++.+++|++|+++. .+...+.....+++|++|+++++ .+..++ ...+.+++|++|+++
T Consensus 427 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls 505 (606)
T 3vq2_A 427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMS 505 (606)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECC
T ss_pred CEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC-cCCccChhhhcccccCCEEECC
Confidence 8888888876655666678888888888821 11124445567888999998885 455543 445678899999999
Q ss_pred cCCCCCccccccCCCCCCcEEEEecCC
Q 044597 290 PCAHLKRIPEQLWCLKSLNKLELWWPE 316 (341)
Q Consensus 290 ~c~~l~~lp~~l~~l~~L~~L~l~~~~ 316 (341)
+|......|..+.++++|++|++++|.
T Consensus 506 ~N~l~~~~~~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 506 HNNLLFLDSSHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp SSCCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred CCcCCCcCHHHccCCCcCCEEECCCCc
Confidence 997333347788889999999999886
No 52
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.74 E-value=1.3e-17 Score=142.97 Aligned_cols=203 Identities=15% Similarity=0.135 Sum_probs=137.5
Q ss_pred CcccChhhhhcCCCccEEecCCccccccch-hhcccccCceeeecCcC-CCCCCceEEeCCCcchhhhhCCCCCCceEEE
Q 044597 87 LKSLPSSFLSSLLNLYTLEMPFSYIDHTAD-EFWKMSKLRYLNFGAIT-LPAHPGKYSLHPCCSTEEILGRLPNLQNLRI 164 (341)
Q Consensus 87 ~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~-~i~~L~~L~~L~l~~~~-lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l 164 (341)
++++|. + .. +|++|++++|.+..+|. .+..+++|++|+++++. +. .. ++.+++.+++|++|++
T Consensus 23 l~~ip~-~-~~--~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~----------~i-~~~~f~~l~~L~~L~l 87 (239)
T 2xwt_C 23 IQRIPS-L-PP--STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ----------QL-ESHSFYNLSKVTHIEI 87 (239)
T ss_dssp CSSCCC-C-CT--TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC----------EE-CTTTEESCTTCCEEEE
T ss_pred ccccCC-C-CC--cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc----------ee-CHhHcCCCcCCcEEEC
Confidence 556666 4 33 67777777777777765 56777777777777632 32 12 2212677777777777
Q ss_pred Ee-ecchhhhHHH-HHhcCCCCCCEEEEEeCCCCCCCCccCcccccccCCcc---EEEEEee-cCCCCCCccCcCCCCCC
Q 044597 165 WG-DLSYYQSLLS-KSLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLT---HLSFSNI-ELIDDPMPALEKLPVLQ 238 (341)
Q Consensus 165 ~~-~~~~~~~~l~-~~l~~l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~---~L~l~~~-~l~~~~~~~l~~l~~L~ 238 (341)
++ +. ...++ ..+..+++|+.|++++| .++.+|.+..+ ++|+ .|++++| .++..+...+..+++|+
T Consensus 88 ~~~n~---l~~i~~~~f~~l~~L~~L~l~~n-----~l~~lp~~~~l-~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~ 158 (239)
T 2xwt_C 88 RNTRN---LTYIDPDALKELPLLKFLGIFNT-----GLKMFPDLTKV-YSTDIFFILEITDNPYMTSIPVNAFQGLCNET 158 (239)
T ss_dssp EEETT---CCEECTTSEECCTTCCEEEEEEE-----CCCSCCCCTTC-CBCCSEEEEEEESCTTCCEECTTTTTTTBSSE
T ss_pred CCCCC---eeEcCHHHhCCCCCCCEEeCCCC-----CCccccccccc-cccccccEEECCCCcchhhcCcccccchhcce
Confidence 76 43 33333 34667788888888877 66777744455 5665 8888888 76555555688888888
Q ss_pred -eEEEEEeC-cEeeecCCCCCcccEEEEecCCCCCceeec-CCCC-CcccEEEEecCCCCCccccccCCCCCCcEEEEec
Q 044597 239 -VLKLKYLG-RKLACSSDGFPKLKVLHLKSMLWLEEWTMG-IKAM-PKLECVIINPCAHLKRIPEQLWCLKSLNKLELWW 314 (341)
Q Consensus 239 -~L~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l-~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 314 (341)
+|+++.+. ..++......++|++|+++++..++.++.. ...+ ++|+.|++++|+ ++.+|.. .+++|+.|++.+
T Consensus 159 ~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~-l~~l~~~--~~~~L~~L~l~~ 235 (239)
T 2xwt_C 159 LTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS-VTALPSK--GLEHLKELIARN 235 (239)
T ss_dssp EEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC-CCCCCCT--TCTTCSEEECTT
T ss_pred eEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc-cccCChh--HhccCceeeccC
Confidence 88883332 223222223378999999986568877643 4567 899999999988 7888865 688999999988
Q ss_pred CC
Q 044597 315 PE 316 (341)
Q Consensus 315 ~~ 316 (341)
+.
T Consensus 236 ~~ 237 (239)
T 2xwt_C 236 TW 237 (239)
T ss_dssp C-
T ss_pred cc
Confidence 76
No 53
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.73 E-value=3.1e-17 Score=158.02 Aligned_cols=106 Identities=18% Similarity=0.150 Sum_probs=66.9
Q ss_pred cccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcc
Q 044597 70 PIMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCS 148 (341)
Q Consensus 70 ~~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~ 148 (341)
..+..+++|++|+++ +.+..++...|+++++|++|++++|.+..+|.. .+++|++|+++++.+. ...
T Consensus 70 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~----------~l~ 137 (562)
T 3a79_B 70 PDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFD----------VLP 137 (562)
T ss_dssp GGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCS----------BCC
T ss_pred hhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCcc----------ccC
Confidence 356677777777777 467766444447777777788777777777766 6777777777773331 110
Q ss_pred -hhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCC--CEEEEEeC
Q 044597 149 -TEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCL--ESLKLANE 193 (341)
Q Consensus 149 -~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L--~~L~l~~~ 193 (341)
+.. ++++++|++|+++++.... ..+..+++| +.|+++++
T Consensus 138 ~p~~-~~~l~~L~~L~L~~n~l~~-----~~~~~l~~L~L~~L~L~~n 179 (562)
T 3a79_B 138 VCKE-FGNLTKLTFLGLSAAKFRQ-----LDLLPVAHLHLSCILLDLV 179 (562)
T ss_dssp CCGG-GGGCTTCCEEEEECSBCCT-----TTTGGGTTSCEEEEEEEES
T ss_pred chHh-hcccCcccEEecCCCcccc-----CchhhhhhceeeEEEeecc
Confidence 234 7777788888887765211 123333444 66666665
No 54
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.73 E-value=4e-17 Score=153.19 Aligned_cols=220 Identities=18% Similarity=0.119 Sum_probs=125.6
Q ss_pred cCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCC-------CCceEEe
Q 044597 72 MDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPA-------HPGKYSL 143 (341)
Q Consensus 72 ~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~-------~i~~~~~ 143 (341)
+..+++|++|+++ +.+..+| + +++++|++|++++|.+..+| ++.+++|++|+++++.+.. .++.+.+
T Consensus 81 ~~~l~~L~~L~Ls~N~l~~~~--~-~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l 155 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNKLTNLD--V-TPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDC 155 (457)
T ss_dssp CTTCTTCSEEECCSSCCSCCC--C-TTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEEC
T ss_pred cccCCCCCEEECcCCCCceee--c-CCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccceeccccCCcCCEEEC
Confidence 6677888888887 4677775 5 88888888888888777775 7788888888887732211 1144444
Q ss_pred CCC-cchh--hhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCcccccccCCccEEEEEe
Q 044597 144 HPC-CSTE--EILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSN 220 (341)
Q Consensus 144 ~~~-~~~~--~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l~~ 220 (341)
+++ . .. . ++.+++|++|+++++. ...++ ++.+++|+.|++++| .++.++ +..+ ++|+.|++++
T Consensus 156 ~~n~~-~~~~~-~~~l~~L~~L~ls~n~---l~~l~--l~~l~~L~~L~l~~N-----~l~~~~-l~~l-~~L~~L~Ls~ 221 (457)
T 3bz5_A 156 HLNKK-ITKLD-VTPQTQLTTLDCSFNK---ITELD--VSQNKLLNRLNCDTN-----NITKLD-LNQN-IQLTFLDCSS 221 (457)
T ss_dssp TTCSC-CCCCC-CTTCTTCCEEECCSSC---CCCCC--CTTCTTCCEEECCSS-----CCSCCC-CTTC-TTCSEEECCS
T ss_pred CCCCc-ccccc-cccCCcCCEEECCCCc---cceec--cccCCCCCEEECcCC-----cCCeec-cccC-CCCCEEECcC
Confidence 432 1 11 2 5566777777777664 22232 555666666666655 444443 3344 4555555555
Q ss_pred ecCCCCCCccCcCCCCCCeEEEEEeC-c------------------------------EeeecCCCCCcccEEEEecCCC
Q 044597 221 IELIDDPMPALEKLPVLQVLKLKYLG-R------------------------------KLACSSDGFPKLKVLHLKSMLW 269 (341)
Q Consensus 221 ~~l~~~~~~~l~~l~~L~~L~l~~~~-~------------------------------~~~~~~~~~~~L~~L~l~~~~~ 269 (341)
|.++.. + ++.+++|+.|+++.+. . ......+.+++|++|+++++..
T Consensus 222 N~l~~i--p-~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~ 298 (457)
T 3bz5_A 222 NKLTEI--D-VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQ 298 (457)
T ss_dssp SCCSCC--C-CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTT
T ss_pred Cccccc--C-ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcc
Confidence 554331 1 4444455555441111 0 0011123456666666666655
Q ss_pred CCceeec--------CCCCCcccEEEEecCCCCCccccccCCCCCCcEEEEecCC
Q 044597 270 LEEWTMG--------IKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLELWWPE 316 (341)
Q Consensus 270 l~~~~~~--------~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 316 (341)
+..++.. .+.+++|+.|++++|. ++.++ +.++++|+.|+++++.
T Consensus 299 l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~-l~~l~--l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 299 LYLLDCQAAGITELDLSQNPKLVYLYLNNTE-LTELD--VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp CCEEECTTCCCSCCCCTTCTTCCEEECTTCC-CSCCC--CTTCTTCSEEECCSSC
T ss_pred cceeccCCCcceEechhhcccCCEEECCCCc-ccccc--cccCCcCcEEECCCCC
Confidence 5444421 2344566666666665 55553 6677788888877765
No 55
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.72 E-value=1.9e-17 Score=144.59 Aligned_cols=192 Identities=23% Similarity=0.296 Sum_probs=119.1
Q ss_pred eeeeccC-CCCcccChhhhhcCCCccEEecCCccccccch-hhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCC
Q 044597 78 LRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTAD-EFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGR 155 (341)
Q Consensus 78 Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~-~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~ 155 (341)
.+.++++ ..++.+|..+ . +++++|++++|.+..+|. .+..+++|++|+++++.+. .. ++..++.
T Consensus 18 ~~~l~~~~~~l~~ip~~~-~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~----------~i-~~~~~~~ 83 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNI-P--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ----------TL-PAGIFKE 83 (270)
T ss_dssp TTEEECTTSCCSSCCSCC-C--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS----------CC-CTTTTSS
T ss_pred CCEEEccCCCCCccCCCC-C--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC----------ee-ChhhhcC
Confidence 4667776 4788888766 3 678899999998888875 6788888888888874332 22 2221567
Q ss_pred CCCCceEEEEeecchhhhHHH-HHhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCCCCccCc
Q 044597 156 LPNLQNLRIWGDLSYYQSLLS-KSLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDDPMPALE 232 (341)
Q Consensus 156 l~~L~~L~l~~~~~~~~~~l~-~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~ 232 (341)
+++|++|+++++. ...++ ..+..+++|+.|+++++ .+..+| .+..+ ++|++|++++|.++..+...++
T Consensus 84 l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n-----~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~ 154 (270)
T 2o6q_A 84 LKNLETLWVTDNK---LQALPIGVFDQLVNLAELRLDRN-----QLKSLPPRVFDSL-TKLTYLSLGYNELQSLPKGVFD 154 (270)
T ss_dssp CTTCCEEECCSSC---CCCCCTTTTTTCSSCCEEECCSS-----CCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTT
T ss_pred CCCCCEEECCCCc---CCcCCHhHcccccCCCEEECCCC-----ccCeeCHHHhCcC-cCCCEEECCCCcCCccCHhHcc
Confidence 7777777777764 22222 23466677777777766 566655 45566 6777777777766544444455
Q ss_pred CCCCCCeEEEEEeCcEeeecCCCCCcccEEEEecCCCCCceeec-CCCCCcccEEEEecCCCCCccccc-cCCCCCCcEE
Q 044597 233 KLPVLQVLKLKYLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMG-IKAMPKLECVIINPCAHLKRIPEQ-LWCLKSLNKL 310 (341)
Q Consensus 233 ~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L 310 (341)
.+++|++|++ +++ .+..++.. ...+++|+.|++++|. ++.+|.. +..+++|+.|
T Consensus 155 ~l~~L~~L~L----------------------~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L 210 (270)
T 2o6q_A 155 KLTSLKELRL----------------------YNN-QLKRVPEGAFDKLTELKTLKLDNNQ-LKRVPEGAFDSLEKLKML 210 (270)
T ss_dssp TCTTCCEEEC----------------------CSS-CCSCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEE
T ss_pred CCcccceeEe----------------------cCC-cCcEeChhHhccCCCcCEEECCCCc-CCcCCHHHhccccCCCEE
Confidence 5666666655 331 23333321 2345666666666664 5555543 4556666666
Q ss_pred EEecCC
Q 044597 311 ELWWPE 316 (341)
Q Consensus 311 ~l~~~~ 316 (341)
++++||
T Consensus 211 ~l~~N~ 216 (270)
T 2o6q_A 211 QLQENP 216 (270)
T ss_dssp ECCSSC
T ss_pred EecCCC
Confidence 666654
No 56
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.72 E-value=6.9e-18 Score=150.58 Aligned_cols=213 Identities=20% Similarity=0.190 Sum_probs=121.3
Q ss_pred eeeeccC-CCCc--ccChhhhh-------cCCCccEEecCCcccc-ccchhh--cccccCceeeecCcCCCCCCceEEeC
Q 044597 78 LRENSII-PSLK--SLPSSFLS-------SLLNLYTLEMPFSYID-HTADEF--WKMSKLRYLNFGAITLPAHPGKYSLH 144 (341)
Q Consensus 78 Lr~L~l~-~~~~--~lp~~if~-------~L~~L~~L~Ls~~~~~-~lp~~i--~~L~~L~~L~l~~~~lp~~i~~~~~~ 144 (341)
++.|+++ +.+. .+|..+ . ++++|++|++++|.+. .+|..+ ..+++|++|+++++.+.
T Consensus 65 L~~L~L~~n~l~~~~~~~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~--------- 134 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRI-LFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWA--------- 134 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHH-HHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCS---------
T ss_pred HhhcccccccccCCCcCHHH-HHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCc---------
Confidence 5555555 2332 345544 3 5666666666666555 456554 66666666666663332
Q ss_pred CCcchhhhhCCC-----CCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCcc---Cc-cc--ccccCCc
Q 044597 145 PCCSTEEILGRL-----PNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNT---IL-AE--YQFPPSL 213 (341)
Q Consensus 145 ~~~~~~~~l~~l-----~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~---lp-~~--~~lp~~L 213 (341)
.. +.. ++.+ ++|++|+++++. .....+..++.+++|+.|++++| .+.. +| .+ ..+ ++|
T Consensus 135 -~~-~~~-~~~l~~~~~~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~Ls~N-----~l~~~~~~~~~~~~~~l-~~L 203 (312)
T 1wwl_A 135 -TR-DAW-LAELQQWLKPGLKVLSIAQAH--SLNFSCEQVRVFPALSTLDLSDN-----PELGERGLISALCPLKF-PTL 203 (312)
T ss_dssp -SS-SSH-HHHHHTTCCTTCCEEEEESCS--CCCCCTTTCCCCSSCCEEECCSC-----TTCHHHHHHHHSCTTSC-TTC
T ss_pred -ch-hHH-HHHHHHhhcCCCcEEEeeCCC--CccchHHHhccCCCCCEEECCCC-----CcCcchHHHHHHHhccC-CCC
Confidence 11 111 2222 666666666664 11122245566666666666665 3222 22 22 556 666
Q ss_pred cEEEEEeecCCCC---CCccCcCCCCCCeEEEEEeCcEe-e--ecCCCCCcccEEEEecCCCCCceeecCCCCCcccEEE
Q 044597 214 THLSFSNIELIDD---PMPALEKLPVLQVLKLKYLGRKL-A--CSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVI 287 (341)
Q Consensus 214 ~~L~l~~~~l~~~---~~~~l~~l~~L~~L~l~~~~~~~-~--~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~ 287 (341)
++|++++|.++.. ....+..+++|++|+++.+.... . .....+++|++|+++++ .++.++.... ++|++|+
T Consensus 204 ~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~ 280 (312)
T 1wwl_A 204 QVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPKGLP--AKLSVLD 280 (312)
T ss_dssp CEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS-CCSSCCSSCC--SEEEEEE
T ss_pred CEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCC-ccChhhhhcc--CCceEEE
Confidence 6666666665321 11123355666666662221111 1 12234577888888873 4666665543 7899999
Q ss_pred EecCCCCCccccccCCCCCCcEEEEecCC
Q 044597 288 INPCAHLKRIPEQLWCLKSLNKLELWWPE 316 (341)
Q Consensus 288 l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 316 (341)
+++|. ++.+|. +..+++|++|++++++
T Consensus 281 Ls~N~-l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 281 LSYNR-LDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCSSC-CCSCCC-TTTSCEEEEEECTTCT
T ss_pred CCCCC-CCCChh-HhhCCCCCEEeccCCC
Confidence 99887 777776 7888999999999887
No 57
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.72 E-value=8.8e-18 Score=148.32 Aligned_cols=170 Identities=19% Similarity=0.111 Sum_probs=130.4
Q ss_pred ceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhC
Q 044597 76 VRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILG 154 (341)
Q Consensus 76 ~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~ 154 (341)
..++.|+++ +.+..++...|.++++|++|++++|.+..+|.. +.+++|++|+++++.+. .. +.. +.
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l~----------~l-~~~-~~ 97 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQ----------SL-PLL-GQ 97 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCCS----------SC-CCC-TT
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcCC----------cC-chh-hc
Confidence 578999998 588888766559999999999999999998865 89999999999995443 23 334 78
Q ss_pred CCCCCceEEEEeecchhhhHHH-HHhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCCCCccC
Q 044597 155 RLPNLQNLRIWGDLSYYQSLLS-KSLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDDPMPAL 231 (341)
Q Consensus 155 ~l~~L~~L~l~~~~~~~~~~l~-~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l 231 (341)
.+++|++|+++++. ...++ ..+..+++|+.|++++| .++.+| .+..+ ++|+.|++++|.++..+...+
T Consensus 98 ~l~~L~~L~l~~N~---l~~l~~~~~~~l~~L~~L~L~~N-----~l~~~~~~~~~~l-~~L~~L~L~~N~l~~l~~~~~ 168 (290)
T 1p9a_G 98 TLPALTVLDVSFNR---LTSLPLGALRGLGELQELYLKGN-----ELKTLPPGLLTPT-PKLEKLSLANNNLTELPAGLL 168 (290)
T ss_dssp TCTTCCEEECCSSC---CCCCCSSTTTTCTTCCEEECTTS-----CCCCCCTTTTTTC-TTCCEEECTTSCCSCCCTTTT
T ss_pred cCCCCCEEECCCCc---CcccCHHHHcCCCCCCEEECCCC-----CCCccChhhcccc-cCCCEEECCCCcCCccCHHHh
Confidence 88999999999885 33443 45788899999999988 788887 46778 899999999999876666667
Q ss_pred cCCCCCCeEEEEEeC-cEeeecCCCCCcccEEEEecC
Q 044597 232 EKLPVLQVLKLKYLG-RKLACSSDGFPKLKVLHLKSM 267 (341)
Q Consensus 232 ~~l~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~~ 267 (341)
..+++|+.|+++.+. ..++......++|+.|.+.+.
T Consensus 169 ~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 169 NGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSC
T ss_pred cCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCC
Confidence 888888888883322 233333445567777777763
No 58
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.72 E-value=6.6e-18 Score=162.75 Aligned_cols=230 Identities=17% Similarity=0.123 Sum_probs=165.2
Q ss_pred ccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCC--------CCCceE
Q 044597 71 IMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLP--------AHPGKY 141 (341)
Q Consensus 71 ~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp--------~~i~~~ 141 (341)
.+..+.+|+.|++. +.+..+|..+ ..+ +|++|++++|.+..+|. ..+++|++|+++++.+. +.++.+
T Consensus 277 ~~~~l~~L~~L~l~~~~l~~l~~~~-~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L 352 (570)
T 2z63_A 277 LFNCLTNVSSFSLVSVTIERVKDFS-YNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFL 352 (570)
T ss_dssp TTGGGTTCSEEEEESCEECSCCBCC-SCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSCCBCCCCBCTTCCEE
T ss_pred hhcCcCcccEEEecCccchhhhhhh-ccC-CccEEeeccCcccccCc--ccccccCEEeCcCCccccccccccCCCCCEE
Confidence 45566778888886 4677788777 777 88888888887777775 56777777777762211 112455
Q ss_pred EeCCCc-c-----hhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccC-c--ccccccCC
Q 044597 142 SLHPCC-S-----TEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTI-L--AEYQFPPS 212 (341)
Q Consensus 142 ~~~~~~-~-----~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~l-p--~~~~lp~~ 212 (341)
.++++. . +.. +..+++|++|+++++. ...++..+..+++|+.|++++| .+... | .+..+ ++
T Consensus 353 ~l~~n~l~~~~~~~~~-~~~~~~L~~L~l~~n~---l~~~~~~~~~l~~L~~L~l~~n-----~l~~~~~~~~~~~l-~~ 422 (570)
T 2z63_A 353 DLSRNGLSFKGCCSQS-DFGTTSLKYLDLSFNG---VITMSSNFLGLEQLEHLDFQHS-----NLKQMSEFSVFLSL-RN 422 (570)
T ss_dssp ECCSSCCBEEEEEEHH-HHTCSCCCEEECCSCS---EEEEEEEEETCTTCCEEECTTS-----EEESCTTSCTTTTC-TT
T ss_pred eCcCCccCcccccccc-ccccCccCEEECCCCc---cccccccccccCCCCEEEccCC-----ccccccchhhhhcC-CC
Confidence 554421 0 223 6678888888888774 3333444778888888888877 55554 2 46678 89
Q ss_pred ccEEEEEeecCCCCCCccCcCCCCCCeEEEEEe---CcEeeecCCCCCcccEEEEecCCCCCce-eecCCCCCcccEEEE
Q 044597 213 LTHLSFSNIELIDDPMPALEKLPVLQVLKLKYL---GRKLACSSDGFPKLKVLHLKSMLWLEEW-TMGIKAMPKLECVII 288 (341)
Q Consensus 213 L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~---~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l 288 (341)
|++|++++|.+.......++.+++|++|+++.+ ....+.....+++|++|+++++. +..+ +...+.+++|++|++
T Consensus 423 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l 501 (570)
T 2z63_A 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNM 501 (570)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEEC
T ss_pred CCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc-cccCChhhhhcccCCCEEeC
Confidence 999999999876666677888999999999221 12355566789999999999864 5555 456678999999999
Q ss_pred ecCCCCCccc-cccCCCCCCcEEEEecCC
Q 044597 289 NPCAHLKRIP-EQLWCLKSLNKLELWWPE 316 (341)
Q Consensus 289 ~~c~~l~~lp-~~l~~l~~L~~L~l~~~~ 316 (341)
++|. +..+| ..+.++++|+.|++++|+
T Consensus 502 ~~n~-l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 502 ASNQ-LKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp CSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCc-CCCCCHHHhhcccCCcEEEecCCc
Confidence 9997 66665 457889999999999966
No 59
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.72 E-value=7.7e-18 Score=161.65 Aligned_cols=149 Identities=19% Similarity=0.240 Sum_probs=95.8
Q ss_pred ceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccc-hhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhh
Q 044597 76 VRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTA-DEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEIL 153 (341)
Q Consensus 76 ~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp-~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l 153 (341)
.++++|+++ +.+..++...|+++++|++|++++|.+..+| ..++.+++|++|+++++.+. ...+.. +
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~----------~~~~~~-~ 94 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS----------SLSSSW-F 94 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC----------SCCHHH-H
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC----------ccCHHH-h
Confidence 689999998 5788875444499999999999999988886 67999999999999994443 120233 6
Q ss_pred CCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCCCCccC
Q 044597 154 GRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDDPMPAL 231 (341)
Q Consensus 154 ~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l 231 (341)
+++++|++|+++++..... ..+..++.+++|+.|++++|. .++.+| .+..+ ++|++|++++|.+.......+
T Consensus 95 ~~l~~L~~L~Ls~n~l~~~-~~~~~~~~l~~L~~L~L~~n~----~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~l 168 (549)
T 2z81_A 95 GPLSSLKYLNLMGNPYQTL-GVTSLFPNLTNLQTLRIGNVE----TFSEIRRIDFAGL-TSLNELEIKALSLRNYQSQSL 168 (549)
T ss_dssp TTCTTCCEEECTTCCCSSS-CSSCSCTTCTTCCEEEEEESS----SCCEECTTTTTTC-CEEEEEEEEETTCCEECTTTT
T ss_pred ccCCCCcEEECCCCccccc-chhhhhhccCCccEEECCCCc----cccccCHhhhhcc-cccCeeeccCCcccccChhhh
Confidence 6666666666666531110 123345666666666666652 245554 45556 666666666666544333444
Q ss_pred cCCCCCCeEE
Q 044597 232 EKLPVLQVLK 241 (341)
Q Consensus 232 ~~l~~L~~L~ 241 (341)
+.+++|++|+
T Consensus 169 ~~l~~L~~L~ 178 (549)
T 2z81_A 169 KSIRDIHHLT 178 (549)
T ss_dssp TTCSEEEEEE
T ss_pred hccccCceEe
Confidence 4443333333
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.72 E-value=2.1e-18 Score=154.36 Aligned_cols=211 Identities=17% Similarity=0.135 Sum_probs=166.3
Q ss_pred ceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccc-hhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhh
Q 044597 76 VRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTA-DEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEIL 153 (341)
Q Consensus 76 ~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp-~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l 153 (341)
..+...++. +.+...+..+|..+++|++|++++|.+..++ ..+..+++|++|+++++.+.. ... +
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~------------~~~-~ 76 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE------------TLD-L 76 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE------------EEE-E
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc------------chh-h
Confidence 345666665 4777777778788899999999999988876 689999999999999854421 344 8
Q ss_pred CCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCcccccccCCccEEEEEeecCCCCCCccCcC
Q 044597 154 GRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSNIELIDDPMPALEK 233 (341)
Q Consensus 154 ~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~ 233 (341)
+.+++|++|++++|. ... +...++|+.|++++| .+..++ ...+ ++|++|++++|.++......++.
T Consensus 77 ~~l~~L~~L~Ls~n~---l~~----l~~~~~L~~L~l~~n-----~l~~~~-~~~~-~~L~~L~l~~N~l~~~~~~~~~~ 142 (317)
T 3o53_A 77 ESLSTLRTLDLNNNY---VQE----LLVGPSIETLHAANN-----NISRVS-CSRG-QGKKNIYLANNKITMLRDLDEGC 142 (317)
T ss_dssp TTCTTCCEEECCSSE---EEE----EEECTTCCEEECCSS-----CCSEEE-ECCC-SSCEEEECCSSCCCSGGGBCTGG
T ss_pred hhcCCCCEEECcCCc---ccc----ccCCCCcCEEECCCC-----ccCCcC-cccc-CCCCEEECCCCCCCCccchhhhc
Confidence 899999999999985 222 234589999999998 777776 1236 89999999999987666667889
Q ss_pred CCCCCeEEEEEeC-cEeee-c-CCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCccccccCCCCCCcEE
Q 044597 234 LPVLQVLKLKYLG-RKLAC-S-SDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKL 310 (341)
Q Consensus 234 l~~L~~L~l~~~~-~~~~~-~-~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L 310 (341)
+++|++|+++.+. ..... . ...+++|++|+++++ .+..++.. ..+++|++|++++|. ++.+|..+..+++|++|
T Consensus 143 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L 219 (317)
T 3o53_A 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQ-VVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWI 219 (317)
T ss_dssp GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECC-CCCTTCCEEECCSSC-CCEECGGGGGGTTCSEE
T ss_pred cCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC-cCcccccc-cccccCCEEECCCCc-CCcchhhhcccCcccEE
Confidence 9999999993332 22221 1 235799999999984 57777543 358999999999998 88888888899999999
Q ss_pred EEecCC
Q 044597 311 ELWWPE 316 (341)
Q Consensus 311 ~l~~~~ 316 (341)
++++|.
T Consensus 220 ~L~~N~ 225 (317)
T 3o53_A 220 SLRNNK 225 (317)
T ss_dssp ECTTSC
T ss_pred ECcCCc
Confidence 999997
No 61
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.72 E-value=9.1e-19 Score=156.31 Aligned_cols=216 Identities=20% Similarity=0.207 Sum_probs=118.7
Q ss_pred CCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCcccc--ccchhhc-------ccccCceeeecCcCCCCCCceEE
Q 044597 73 DQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYID--HTADEFW-------KMSKLRYLNFGAITLPAHPGKYS 142 (341)
Q Consensus 73 ~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~--~lp~~i~-------~L~~L~~L~l~~~~lp~~i~~~~ 142 (341)
....+|+.+++. +.+ .+|..+ ... |++|++++|.+. .+|..+. .+++|++|+++++.+.
T Consensus 40 ~~~~~L~~l~l~~n~l-~~p~~~-~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~------- 108 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE-ADLGQF-TDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT------- 108 (312)
T ss_dssp EEEEECTTHHHHCCTT-CCCHHH-HHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCB-------
T ss_pred ccCCCceeEeeccccc-ccHHHH-HHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCccc-------
Confidence 344556666665 345 667666 333 667777777553 3455554 5677777777662221
Q ss_pred eCCCcchhhhh--CCCCCCceEEEEeecchhhhHHHHHhcCC-----CCCCEEEEEeCCCCCCCCccCc--ccccccCCc
Q 044597 143 LHPCCSTEEIL--GRLPNLQNLRIWGDLSYYQSLLSKSLCRL-----SCLESLKLANESKMPRRSNTIL--AEYQFPPSL 213 (341)
Q Consensus 143 ~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~l~~~l~~l-----~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L 213 (341)
+.. +.. + +.+++|++|+++++.... .|..++.+ ++|++|++++| .+..++ .+..+ ++|
T Consensus 109 --~~~-~~~-~~~~~l~~L~~L~Ls~N~l~~---~~~~~~~l~~~~~~~L~~L~L~~N-----~l~~~~~~~~~~l-~~L 175 (312)
T 1wwl_A 109 --GTA-PPP-LLEATGPDLNILNLRNVSWAT---RDAWLAELQQWLKPGLKVLSIAQA-----HSLNFSCEQVRVF-PAL 175 (312)
T ss_dssp --SCC-CCC-SSSCCSCCCSEEEEESCBCSS---SSSHHHHHHTTCCTTCCEEEEESC-----SCCCCCTTTCCCC-SSC
T ss_pred --chh-HHH-HHHhcCCCccEEEccCCCCcc---hhHHHHHHHHhhcCCCcEEEeeCC-----CCccchHHHhccC-CCC
Confidence 122 222 3 667777777777664221 12333333 67777777766 555554 55666 677
Q ss_pred cEEEEEeecCCCC--CCccC--cCCCCCCeEEEEEeCcE-ee----ecCCCCCcccEEEEecCCCCCcee--ecCCCCCc
Q 044597 214 THLSFSNIELIDD--PMPAL--EKLPVLQVLKLKYLGRK-LA----CSSDGFPKLKVLHLKSMLWLEEWT--MGIKAMPK 282 (341)
Q Consensus 214 ~~L~l~~~~l~~~--~~~~l--~~l~~L~~L~l~~~~~~-~~----~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~l~~ 282 (341)
++|++++|.+... .++.+ +.+++|++|+++.+... .. .....+++|++|+++++ .+...+ .....+++
T Consensus 176 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~ 254 (312)
T 1wwl_A 176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN-SLRDAAGAPSCDWPSQ 254 (312)
T ss_dssp CEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTS-CCCSSCCCSCCCCCTT
T ss_pred CEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCC-cCCcccchhhhhhcCC
Confidence 7777777764321 11222 56677777777222211 00 01124567777777763 343322 12233567
Q ss_pred ccEEEEecCCCCCccccccCCCCCCcEEEEecCC
Q 044597 283 LECVIINPCAHLKRIPEQLWCLKSLNKLELWWPE 316 (341)
Q Consensus 283 L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 316 (341)
|++|++++|. ++.+|..+. ++|++|++++|.
T Consensus 255 L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~ 285 (312)
T 1wwl_A 255 LNSLNLSFTG-LKQVPKGLP--AKLSVLDLSYNR 285 (312)
T ss_dssp CCEEECTTSC-CSSCCSSCC--SEEEEEECCSSC
T ss_pred CCEEECCCCc-cChhhhhcc--CCceEEECCCCC
Confidence 7777777776 556666554 667777777765
No 62
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.71 E-value=1.1e-17 Score=164.63 Aligned_cols=61 Identities=15% Similarity=0.166 Sum_probs=45.3
Q ss_pred ccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccch-hhcccccCceeeecC
Q 044597 71 IMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTAD-EFWKMSKLRYLNFGA 131 (341)
Q Consensus 71 ~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~-~i~~L~~L~~L~l~~ 131 (341)
.+.++++|++|+++ +.+..++...|+++++|++|++++|.+..+|. .++++++|++|++++
T Consensus 44 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~ 106 (680)
T 1ziw_A 44 NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMS 106 (680)
T ss_dssp GGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred HHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCC
Confidence 46677788888887 46666654444888888888888887777776 477888888888877
No 63
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.71 E-value=3.6e-17 Score=161.02 Aligned_cols=238 Identities=18% Similarity=0.146 Sum_probs=146.1
Q ss_pred cccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccc-hhhcccccCceeeecCcCCC----CCC-----
Q 044597 70 PIMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTA-DEFWKMSKLRYLNFGAITLP----AHP----- 138 (341)
Q Consensus 70 ~~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp-~~i~~L~~L~~L~l~~~~lp----~~i----- 138 (341)
..+.++++|++|+++ +.+..+|...|+++++|++|++++|.+..+| ..++++++|++|+++++.+. ..+
T Consensus 67 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 146 (680)
T 1ziw_A 67 ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 146 (680)
T ss_dssp THHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTT
T ss_pred HHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhccccc
Confidence 346678899999998 5888999865599999999999999888886 57899999999999983332 111
Q ss_pred -ceEEeCCC----cchhhhhC--CCCCCceEEEEeecchhhhHHHHHhcC---------------------------CCC
Q 044597 139 -GKYSLHPC----CSTEEILG--RLPNLQNLRIWGDLSYYQSLLSKSLCR---------------------------LSC 184 (341)
Q Consensus 139 -~~~~~~~~----~~~~~~l~--~l~~L~~L~l~~~~~~~~~~l~~~l~~---------------------------l~~ 184 (341)
+.+.++++ . ++..++ .+++|++|+++++.... ..+..+.. .++
T Consensus 147 L~~L~L~~n~l~~~-~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~ 223 (680)
T 1ziw_A 147 LQELLLSNNKIQAL-KSEELDIFANSSLKKLELSSNQIKE--FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTS 223 (680)
T ss_dssp CCEEECCSSCCCCB-CHHHHGGGTTCEESEEECTTCCCCC--BCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSC
T ss_pred CCEEEccCCccccc-CHHHhhccccccccEEECCCCcccc--cChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhcc
Confidence 33333321 1 111011 23445555554442110 00111111 134
Q ss_pred CCEEEEEeCCCCCCCCccC-c-cccccc-CCccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeC--cEeeecCCCCCcc
Q 044597 185 LESLKLANESKMPRRSNTI-L-AEYQFP-PSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLG--RKLACSSDGFPKL 259 (341)
Q Consensus 185 L~~L~l~~~~e~~~~l~~l-p-~~~~lp-~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~~~~L 259 (341)
|+.|+++++ .+... | ++..++ ++|+.|++++|.+.......++.+++|++|++..+. ...+.....+++|
T Consensus 224 L~~L~L~~n-----~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 298 (680)
T 1ziw_A 224 IRNLSLSNS-----QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNV 298 (680)
T ss_dssp CCEEECTTS-----CCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTC
T ss_pred ccEEEccCC-----cccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCc
Confidence 444444444 33333 3 555551 238888888888766566678888888888883322 1222345678888
Q ss_pred cEEEEecCCCCC-----ceee----cCCCCCcccEEEEecCCCCCcc-ccccCCCCCCcEEEEecCC
Q 044597 260 KVLHLKSMLWLE-----EWTM----GIKAMPKLECVIINPCAHLKRI-PEQLWCLKSLNKLELWWPE 316 (341)
Q Consensus 260 ~~L~l~~~~~l~-----~~~~----~~~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~~~ 316 (341)
++|++.++..-. .++. ..+.+++|++|++.+|. +..+ |..+.++++|++|++++|.
T Consensus 299 ~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 299 RYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND-IPGIKSNMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp CEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC-BCCCCTTTTTTCTTCCEEECTTCB
T ss_pred cEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc-cCCCChhHhccccCCcEEECCCCc
Confidence 888887532111 2221 34568889999998887 4544 4456778888888888764
No 64
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.71 E-value=8.6e-18 Score=147.21 Aligned_cols=180 Identities=19% Similarity=0.156 Sum_probs=132.2
Q ss_pred ccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccc-hhhcccccCceeeecCcCCCCCCceEEeCCCcc
Q 044597 71 IMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTA-DEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCS 148 (341)
Q Consensus 71 ~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp-~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~ 148 (341)
.+..+.+|++|+++ +.+..++...|+++++|++|++++|.+..++ ..+.++++|++|+++++.+. ...
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~----------~~~ 116 (276)
T 2z62_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA----------SLE 116 (276)
T ss_dssp TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCC----------CST
T ss_pred HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCcc----------ccC
Confidence 67889999999998 5788888765599999999999999988876 57899999999999984443 120
Q ss_pred hhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCcc----EEEEEeec
Q 044597 149 TEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLT----HLSFSNIE 222 (341)
Q Consensus 149 ~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~----~L~l~~~~ 222 (341)
... ++.+++|++|+++++.... ..+|..+..+++|+.|++++| .++.++ .+..+ .+|+ .|++++|.
T Consensus 117 ~~~-~~~l~~L~~L~l~~n~l~~-~~l~~~~~~l~~L~~L~Ls~N-----~l~~~~~~~~~~l-~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 117 NFP-IGHLKTLKELNVAHNLIQS-FKLPEYFSNLTNLEHLDLSSN-----KIQSIYCTDLRVL-HQMPLLNLSLDLSLNP 188 (276)
T ss_dssp TCC-CTTCTTCCEEECCSSCCCC-CCCCGGGGGCTTCCEEECCSS-----CCCEECGGGGHHH-HTCTTCCEEEECCSSC
T ss_pred chh-cccCCCCCEEECcCCccce-ecCchhhccCCCCCEEECCCC-----CCCcCCHHHhhhh-hhccccceeeecCCCc
Confidence 224 8899999999999985221 125678899999999999998 777775 56666 5666 78888887
Q ss_pred CCCCCCccCcCCCCCCeEEEEEeCcEeeecCCCCCcccEEEEecCCCCCceeec-CCCCCcccEEEEecCC
Q 044597 223 LIDDPMPALEKLPVLQVLKLKYLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMG-IKAMPKLECVIINPCA 292 (341)
Q Consensus 223 l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~ 292 (341)
+...+...+ ...+|++|+++++ .++.++.. ...+++|+.|++.+|+
T Consensus 189 l~~~~~~~~-----------------------~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 189 MNFIQPGAF-----------------------KEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CCEECTTSS-----------------------CSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred ccccCcccc-----------------------CCCcccEEECCCC-ceeecCHhHhcccccccEEEccCCc
Confidence 643222211 1225666666653 35555543 2467888888888877
No 65
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.71 E-value=1.2e-17 Score=146.14 Aligned_cols=206 Identities=17% Similarity=0.174 Sum_probs=154.5
Q ss_pred ccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcch
Q 044597 71 IMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCST 149 (341)
Q Consensus 71 ~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~ 149 (341)
....+.+++.|++. +.+..++ .+ +.+++|++|++++|.+..++ .+..+++|++|+++++.+. .. +
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~~~-~l-~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~----------~~-~ 101 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDIKSVQ-GI-QYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQ----------SL-P 101 (272)
T ss_dssp CHHHHTTCCEEECTTSCCCCCT-TG-GGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCC----------CC-C
T ss_pred ccccccceeeeeeCCCCccccc-cc-ccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccC----------cc-C
Confidence 44567788888887 4677666 46 89999999999999888875 7889999999999984443 22 2
Q ss_pred hhhhCCCCCCceEEEEeecchhhhHHH-HHhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCC
Q 044597 150 EEILGRLPNLQNLRIWGDLSYYQSLLS-KSLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDD 226 (341)
Q Consensus 150 ~~~l~~l~~L~~L~l~~~~~~~~~~l~-~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~ 226 (341)
+..++.+++|++|++++|. ...++ ..++.+++|+.|++++| .++.+| .+..+ ++|+.|++++|.++..
T Consensus 102 ~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~n-----~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~ 172 (272)
T 3rfs_A 102 NGVFDKLTNLKELVLVENQ---LQSLPDGVFDKLTNLTYLNLAHN-----QLQSLPKGVFDKL-TNLTELDLSYNQLQSL 172 (272)
T ss_dssp TTTTTTCTTCCEEECTTSC---CCCCCTTTTTTCTTCCEEECCSS-----CCCCCCTTTTTTC-TTCCEEECCSSCCCCC
T ss_pred hhHhcCCcCCCEEECCCCc---CCccCHHHhccCCCCCEEECCCC-----ccCccCHHHhccC-ccCCEEECCCCCcCcc
Confidence 2227889999999999885 33333 34788999999999988 788877 56788 8999999999998766
Q ss_pred CCccCcCCCCCCeEEEEEeC-cEeee-cCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCccccccCCC
Q 044597 227 PMPALEKLPVLQVLKLKYLG-RKLAC-SSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCL 304 (341)
Q Consensus 227 ~~~~l~~l~~L~~L~l~~~~-~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l 304 (341)
+...++.+++|++|+++.+. ..... ....+++|++|++++++ + .+.+|+|+.|.+..+..-+.+|.+++.+
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-~------~~~~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 173 PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP-W------DCTCPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC-B------CCCTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC-c------cccCcHHHHHHHHHHhCCCcccCccccc
Confidence 66668889999999993332 22222 24568899999998853 1 1457888888888887666788777765
Q ss_pred CC
Q 044597 305 KS 306 (341)
Q Consensus 305 ~~ 306 (341)
+.
T Consensus 246 ~~ 247 (272)
T 3rfs_A 246 AP 247 (272)
T ss_dssp CG
T ss_pred CC
Confidence 54
No 66
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.71 E-value=1.1e-17 Score=161.27 Aligned_cols=222 Identities=18% Similarity=0.138 Sum_probs=140.0
Q ss_pred ccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccc-hhhcccccCceeeecCcCCCCCCceEEeCCCcc
Q 044597 71 IMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTA-DEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCS 148 (341)
Q Consensus 71 ~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp-~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~ 148 (341)
.+..+++|++|+++ +.+..+|...|+++++|++|++++|.+..+| ..++.+++|++|+++++.+. ...
T Consensus 47 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~----------~l~ 116 (570)
T 2z63_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA----------SLE 116 (570)
T ss_dssp TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCC----------CST
T ss_pred HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccc----------cCC
Confidence 56677777777776 4677776555577777888888777776665 56777777888777763332 110
Q ss_pred hhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCc----cEEEEEeec
Q 044597 149 TEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSL----THLSFSNIE 222 (341)
Q Consensus 149 ~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L----~~L~l~~~~ 222 (341)
... ++++++|++|+++++.... -.+|..++++++|+.|+++++ .+..++ .+..+ .+| ..+++++|.
T Consensus 117 ~~~-~~~l~~L~~L~L~~n~l~~-~~lp~~~~~l~~L~~L~l~~n-----~l~~~~~~~~~~l-~~L~~~~~~L~l~~n~ 188 (570)
T 2z63_A 117 NFP-IGHLKTLKELNVAHNLIQS-FKLPEYFSNLTNLEHLDLSSN-----KIQSIYCTDLRVL-HQMPLLNLSLDLSLNP 188 (570)
T ss_dssp TCS-CTTCTTCCEEECCSSCCCC-CCCCGGGGGCTTCCEEECTTS-----CCCEECGGGGHHH-HTCTTCCCEEECTTCC
T ss_pred Ccc-ccccccccEEecCCCccce-ecChhhhcccCCCCEEeCcCC-----ccceecHHHccch-hccchhhhhcccCCCC
Confidence 113 7778888888888774111 024667778888888888877 666654 55666 666 778888887
Q ss_pred CCCCCCccCcCCCCCCeEEEEEeCc-------------------------------------------------------
Q 044597 223 LIDDPMPALEKLPVLQVLKLKYLGR------------------------------------------------------- 247 (341)
Q Consensus 223 l~~~~~~~l~~l~~L~~L~l~~~~~------------------------------------------------------- 247 (341)
+.......+... +|+.|++..+..
T Consensus 189 l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 267 (570)
T 2z63_A 189 MNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267 (570)
T ss_dssp CCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEET
T ss_pred ceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcc
Confidence 655444444443 566665521100
Q ss_pred -Ee----eecCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCccccccCCCCCCcEEEEecCC
Q 044597 248 -KL----ACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLELWWPE 316 (341)
Q Consensus 248 -~~----~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 316 (341)
.. +.....+++|++|++.++ .+..++.....+ +|++|++.+|. +..+|. ..+++|+.|++.+|.
T Consensus 268 ~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~l~~~~~~~-~L~~L~l~~n~-~~~l~~--~~l~~L~~L~l~~n~ 336 (570)
T 2z63_A 268 DYYLDDIIDLFNCLTNVSSFSLVSV-TIERVKDFSYNF-GWQHLELVNCK-FGQFPT--LKLKSLKRLTFTSNK 336 (570)
T ss_dssp TEEESCSTTTTGGGTTCSEEEEESC-EECSCCBCCSCC-CCSEEEEESCB-CSSCCB--CBCSSCCEEEEESCB
T ss_pred hhhhhhchhhhcCcCcccEEEecCc-cchhhhhhhccC-CccEEeeccCc-ccccCc--ccccccCEEeCcCCc
Confidence 00 011223566777777764 345555555556 77788887776 556665 457778888887765
No 67
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.70 E-value=5.6e-17 Score=163.44 Aligned_cols=158 Identities=16% Similarity=0.123 Sum_probs=111.8
Q ss_pred ccccCCcceeeeeccCC--CCcccChhhhhcCCCccEEecCCcccccc-chhhcccccCceeeecCcCCCCCCceEEeCC
Q 044597 69 SPIMDQEVRLRENSIIP--SLKSLPSSFLSSLLNLYTLEMPFSYIDHT-ADEFWKMSKLRYLNFGAITLPAHPGKYSLHP 145 (341)
Q Consensus 69 ~~~~~~l~~Lr~L~l~~--~~~~lp~~if~~L~~L~~L~Ls~~~~~~l-p~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~ 145 (341)
...+..+++|++|+++. .+..++...|+++++|++|+|++|.+..+ |..++++++|++|+++++.+..
T Consensus 41 ~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~--------- 111 (844)
T 3j0a_A 41 ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSD--------- 111 (844)
T ss_dssp SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSS---------
T ss_pred hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCc---------
Confidence 45678889999999984 35677444349999999999999988776 7788999999999998843321
Q ss_pred Ccchh-hhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccC-c-ccccc-cCCccEEEEEee
Q 044597 146 CCSTE-EILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTI-L-AEYQF-PPSLTHLSFSNI 221 (341)
Q Consensus 146 ~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~l-p-~~~~l-p~~L~~L~l~~~ 221 (341)
.. +. ..++++++|++|++++|..... ..+..++++++|+.|++++| .+... | .+..+ .++|+.|++++|
T Consensus 112 ~~-~~~~~~~~L~~L~~L~Ls~N~l~~~-~~~~~~~~L~~L~~L~Ls~N-----~i~~~~~~~l~~l~~~~L~~L~L~~n 184 (844)
T 3j0a_A 112 AV-LKDGYFRNLKALTRLDLSKNQIRSL-YLHPSFGKLNSLKSIDFSSN-----QIFLVCEHELEPLQGKTLSFFSLAAN 184 (844)
T ss_dssp CC-STTCCCSSCSSCCEEEEESCCCCCC-CCCGGGGTCSSCCEEEEESS-----CCCCCCSGGGHHHHHCSSCCCEECCS
T ss_pred cc-ccCccccccCCCCEEECCCCccccc-ccchhHhhCCCCCEEECCCC-----cCCeeCHHHcccccCCccceEECCCC
Confidence 11 11 1178899999999999852211 12246889999999999988 55554 3 45433 158999999999
Q ss_pred cCCCCCCccCcCCCC------CCeEEE
Q 044597 222 ELIDDPMPALEKLPV------LQVLKL 242 (341)
Q Consensus 222 ~l~~~~~~~l~~l~~------L~~L~l 242 (341)
.+.......++.+++ |++|++
T Consensus 185 ~l~~~~~~~~~~~~~~~~~~~L~~L~L 211 (844)
T 3j0a_A 185 SLYSRVSVDWGKCMNPFRNMVLEILDV 211 (844)
T ss_dssp BSCCCCCCCCCSSSCTTTTCCBSEEBC
T ss_pred ccccccccchhhcCCccccCceeEEec
Confidence 876654444444443 666666
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.70 E-value=5.8e-17 Score=157.02 Aligned_cols=116 Identities=22% Similarity=0.097 Sum_probs=85.3
Q ss_pred CCCCCEEEEEeCCCCCCCCccCcccccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeCcEeeecCCCCCcccE
Q 044597 182 LSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLGRKLACSSDGFPKLKV 261 (341)
Q Consensus 182 l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~ 261 (341)
+++|+.|++++| .++.+|. .+ ++|+.|++++|.++..+ . .+++|+.|+++++.... ....+++|++
T Consensus 180 ~~~L~~L~Ls~N-----~l~~l~~--~~-~~L~~L~L~~N~l~~l~--~--~~~~L~~L~Ls~N~L~~--lp~~l~~L~~ 245 (622)
T 3g06_A 180 PSGLQELSVSDN-----QLASLPT--LP-SELYKLWAYNNRLTSLP--A--LPSGLKELIVSGNRLTS--LPVLPSELKE 245 (622)
T ss_dssp CTTCCEEECCSS-----CCSCCCC--CC-TTCCEEECCSSCCSSCC--C--CCTTCCEEECCSSCCSC--CCCCCTTCCE
T ss_pred CCCCcEEECCCC-----CCCCCCC--cc-chhhEEECcCCcccccC--C--CCCCCCEEEccCCccCc--CCCCCCcCcE
Confidence 466777777766 6666651 12 67777777777764322 1 34789999884333211 1256789999
Q ss_pred EEEecCCCCCceeecCCCCCcccEEEEecCCCCCccccccCCCCCCcEEEEecCC
Q 044597 262 LHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLELWWPE 316 (341)
Q Consensus 262 L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 316 (341)
|+++++ .+..++. .+++|+.|++++|. ++.+|..+.++++|+.|++++|+
T Consensus 246 L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N~-L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 246 LMVSGN-RLTSLPM---LPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp EECCSS-CCSCCCC---CCTTCCEEECCSSC-CCSCCGGGGGSCTTCEEECCSCC
T ss_pred EECCCC-CCCcCCc---ccccCcEEeCCCCC-CCcCCHHHhhccccCEEEecCCC
Confidence 999984 6777775 57899999999997 88999999999999999999998
No 69
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.70 E-value=6.6e-17 Score=162.93 Aligned_cols=230 Identities=20% Similarity=0.269 Sum_probs=159.1
Q ss_pred ccccCCcceeeeeccC-CCCccc-ChhhhhcCCCccEEecCCccccc-cchh--hcccccCceeeecCcCCCCCCceEEe
Q 044597 69 SPIMDQEVRLRENSII-PSLKSL-PSSFLSSLLNLYTLEMPFSYIDH-TADE--FWKMSKLRYLNFGAITLPAHPGKYSL 143 (341)
Q Consensus 69 ~~~~~~l~~Lr~L~l~-~~~~~l-p~~if~~L~~L~~L~Ls~~~~~~-lp~~--i~~L~~L~~L~l~~~~lp~~i~~~~~ 143 (341)
...+.++++|++|+++ +.+..+ |..+ +++++|++|+|++|.+.. +|.. ++++++|++|+++++.+..
T Consensus 66 ~~~f~~L~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~------- 137 (844)
T 3j0a_A 66 KEAFRNLPNLRILDLGSSKIYFLHPDAF-QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS------- 137 (844)
T ss_dssp TTTTSSCTTCCEEECTTCCCCEECTTSS-CSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCC-------
T ss_pred HHHhcCCCCCCEEECCCCcCcccCHhHc-cCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccc-------
Confidence 4568899999999998 578877 5555 999999999999998765 5655 8999999999999844321
Q ss_pred CCCcch-hhhhCCCCCCceEEEEeecchh-----hhHHH-------------------HHhcCCC------CCCEEEEEe
Q 044597 144 HPCCST-EEILGRLPNLQNLRIWGDLSYY-----QSLLS-------------------KSLCRLS------CLESLKLAN 192 (341)
Q Consensus 144 ~~~~~~-~~~l~~l~~L~~L~l~~~~~~~-----~~~l~-------------------~~l~~l~------~L~~L~l~~ 192 (341)
.. + +. ++++++|++|+++++.... ...+. ..++.+. .|+.|++++
T Consensus 138 --~~-~~~~-~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~ 213 (844)
T 3j0a_A 138 --LY-LHPS-FGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSG 213 (844)
T ss_dssp --CC-CCGG-GGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSS
T ss_pred --cc-cchh-HhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCC
Confidence 11 2 34 8889999999998875211 11110 0111111 256666655
Q ss_pred CCCCCCCCccCc-c------------------------------------cccc-cCCccEEEEEeecCCCCCCccCcCC
Q 044597 193 ESKMPRRSNTIL-A------------------------------------EYQF-PPSLTHLSFSNIELIDDPMPALEKL 234 (341)
Q Consensus 193 ~~e~~~~l~~lp-~------------------------------------~~~l-p~~L~~L~l~~~~l~~~~~~~l~~l 234 (341)
|. -....| . +..+ +++|+.|++++|.+.......++.+
T Consensus 214 n~----l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l 289 (844)
T 3j0a_A 214 NG----WTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL 289 (844)
T ss_dssp CC----SSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSC
T ss_pred Cc----CchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcC
Confidence 41 000111 0 1111 2578888888888766666678889
Q ss_pred CCCCeEEEEEeCc-Ee-eecCCCCCcccEEEEecCCCCCce-eecCCCCCcccEEEEecCCCCCcccc-ccCCCCCCcEE
Q 044597 235 PVLQVLKLKYLGR-KL-ACSSDGFPKLKVLHLKSMLWLEEW-TMGIKAMPKLECVIINPCAHLKRIPE-QLWCLKSLNKL 310 (341)
Q Consensus 235 ~~L~~L~l~~~~~-~~-~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L 310 (341)
++|+.|+++.+.. .. ......+++|++|+++++ .+..+ +...+.+++|+.|++++|. +..++. .+.++++|++|
T Consensus 290 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L 367 (844)
T 3j0a_A 290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQKNH-IAIIQDQTFKFLEKLQTL 367 (844)
T ss_dssp CCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESC-CCSCCCSCSCSSCTTCCEEECCSCC-CCCCCSSCSCSCCCCCEE
T ss_pred CCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCC-CCCccCHHHhcCCCCCCEEECCCCC-CCccChhhhcCCCCCCEE
Confidence 9999999944332 22 234567899999999985 45554 4556789999999999997 676654 57789999999
Q ss_pred EEecCC
Q 044597 311 ELWWPE 316 (341)
Q Consensus 311 ~l~~~~ 316 (341)
++++|.
T Consensus 368 ~Ls~N~ 373 (844)
T 3j0a_A 368 DLRDNA 373 (844)
T ss_dssp EEETCC
T ss_pred ECCCCC
Confidence 999987
No 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.70 E-value=4.8e-17 Score=142.05 Aligned_cols=171 Identities=23% Similarity=0.257 Sum_probs=130.8
Q ss_pred ceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhh-cccccCceeeecCcCCCCCCceEEeCCCcchhhhh
Q 044597 76 VRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEF-WKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEIL 153 (341)
Q Consensus 76 ~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i-~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l 153 (341)
..++.|+++ +.+..+|...|+++++|++|++++|.+..+|..+ ..+++|++|+++++.+. .. ++..+
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~----------~~-~~~~~ 105 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ----------AL-PIGVF 105 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCC----------CC-CTTTT
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCC----------cC-CHhHc
Confidence 578999998 5888998765599999999999999999998764 88999999999984443 22 22227
Q ss_pred CCCCCCceEEEEeecchhhhHH-HHHhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCCCCcc
Q 044597 154 GRLPNLQNLRIWGDLSYYQSLL-SKSLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDDPMPA 230 (341)
Q Consensus 154 ~~l~~L~~L~l~~~~~~~~~~l-~~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~~~ 230 (341)
+.+++|++|+++++. ...+ +..+..+++|+.|++++| .++.+| .+..+ ++|+.|++++|.++..+...
T Consensus 106 ~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~Ls~n-----~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~ 176 (270)
T 2o6q_A 106 DQLVNLAELRLDRNQ---LKSLPPRVFDSLTKLTYLSLGYN-----ELQSLPKGVFDKL-TSLKELRLYNNQLKRVPEGA 176 (270)
T ss_dssp TTCSSCCEEECCSSC---CCCCCTTTTTTCTTCCEEECCSS-----CCCCCCTTTTTTC-TTCCEEECCSSCCSCCCTTT
T ss_pred ccccCCCEEECCCCc---cCeeCHHHhCcCcCCCEEECCCC-----cCCccCHhHccCC-cccceeEecCCcCcEeChhH
Confidence 899999999999985 2233 345789999999999998 888888 57889 99999999999987666666
Q ss_pred CcCCCCCCeEEEEEeC-cEeee-cCCCCCcccEEEEec
Q 044597 231 LEKLPVLQVLKLKYLG-RKLAC-SSDGFPKLKVLHLKS 266 (341)
Q Consensus 231 l~~l~~L~~L~l~~~~-~~~~~-~~~~~~~L~~L~l~~ 266 (341)
+..+++|++|+++.+. ...+. ....+++|+.|++++
T Consensus 177 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 214 (270)
T 2o6q_A 177 FDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214 (270)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred hccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecC
Confidence 8888888888883322 11111 123455666666655
No 71
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.70 E-value=1.7e-17 Score=155.52 Aligned_cols=218 Identities=19% Similarity=0.180 Sum_probs=135.1
Q ss_pred ccccCCcceeeeeccC-CCCc-ccChhhhhcCCCc-------------cEEecCCccccccchhhcccccCceeeecC--
Q 044597 69 SPIMDQEVRLRENSII-PSLK-SLPSSFLSSLLNL-------------YTLEMPFSYIDHTADEFWKMSKLRYLNFGA-- 131 (341)
Q Consensus 69 ~~~~~~l~~Lr~L~l~-~~~~-~lp~~if~~L~~L-------------~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~-- 131 (341)
++.++++++|++|+++ +.+. .+|.++ +++++| ++|++++|.+..+|. ..++|++|++++
T Consensus 27 P~~i~~L~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~---~~~~L~~L~l~~n~ 102 (454)
T 1jl5_A 27 PVEAENVKSKTEYYNAWSEWERNAPPGN-GEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE---LPPHLESLVASCNS 102 (454)
T ss_dssp -------CCHHHHHHHHHHHHHTSCTTS-CCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS---CCTTCSEEECCSSC
T ss_pred ChhHhcccchhhhhccCCcccccCCccc-ccchhcchhhhhhhhccCCCEEEecCCccccCCC---CcCCCCEEEccCCc
Confidence 4456777777777776 3443 567766 766654 777777776666665 235677777776
Q ss_pred -cCCCCC---CceEEeCCCcchhhhhCCC-CCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc-c
Q 044597 132 -ITLPAH---PGKYSLHPCCSTEEILGRL-PNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL-A 205 (341)
Q Consensus 132 -~~lp~~---i~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp-~ 205 (341)
..+|.. ++.+.++++. +.. +..+ ++|++|+++++. ...+| .++.+++|+.|++++| .++.+| .
T Consensus 103 l~~lp~~~~~L~~L~l~~n~-l~~-l~~~~~~L~~L~L~~n~---l~~lp-~~~~l~~L~~L~l~~N-----~l~~lp~~ 171 (454)
T 1jl5_A 103 LTELPELPQSLKSLLVDNNN-LKA-LSDLPPLLEYLGVSNNQ---LEKLP-ELQNSSFLKIIDVDNN-----SLKKLPDL 171 (454)
T ss_dssp CSSCCCCCTTCCEEECCSSC-CSC-CCSCCTTCCEEECCSSC---CSSCC-CCTTCTTCCEEECCSS-----CCSCCCCC
T ss_pred CCccccccCCCcEEECCCCc-cCc-ccCCCCCCCEEECcCCC---CCCCc-ccCCCCCCCEEECCCC-----cCcccCCC
Confidence 334432 2666666655 444 5444 588888888885 33455 5888899999999888 777777 3
Q ss_pred cccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeCcEeeecCCCCCcccEEEEecCCCCCceeecCCCCCcccE
Q 044597 206 EYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLEC 285 (341)
Q Consensus 206 ~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~ 285 (341)
. .+|++|++++|.++. ++.++.+++|++|+++.+... ......++|++|+++++ .+..++ ..+.+++|++
T Consensus 172 ---~-~~L~~L~L~~n~l~~--l~~~~~l~~L~~L~l~~N~l~--~l~~~~~~L~~L~l~~n-~l~~lp-~~~~l~~L~~ 241 (454)
T 1jl5_A 172 ---P-PSLEFIAAGNNQLEE--LPELQNLPFLTAIYADNNSLK--KLPDLPLSLESIVAGNN-ILEELP-ELQNLPFLTT 241 (454)
T ss_dssp ---C-TTCCEEECCSSCCSS--CCCCTTCTTCCEEECCSSCCS--SCCCCCTTCCEEECCSS-CCSSCC-CCTTCTTCCE
T ss_pred ---c-ccccEEECcCCcCCc--CccccCCCCCCEEECCCCcCC--cCCCCcCcccEEECcCC-cCCccc-ccCCCCCCCE
Confidence 2 688889998888754 446888888888888332211 11123357777777764 455555 3556677777
Q ss_pred EEEecCCCCCccccccCCCCCCcEEEEecC
Q 044597 286 VIINPCAHLKRIPEQLWCLKSLNKLELWWP 315 (341)
Q Consensus 286 L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~ 315 (341)
|++++|. +..+|.. +++|++|++++|
T Consensus 242 L~l~~N~-l~~l~~~---~~~L~~L~l~~N 267 (454)
T 1jl5_A 242 IYADNNL-LKTLPDL---PPSLEALNVRDN 267 (454)
T ss_dssp EECCSSC-CSSCCSC---CTTCCEEECCSS
T ss_pred EECCCCc-CCccccc---ccccCEEECCCC
Confidence 7777665 5555532 244555555544
No 72
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.69 E-value=2.3e-17 Score=141.41 Aligned_cols=194 Identities=16% Similarity=0.188 Sum_probs=150.8
Q ss_pred ceeeeeccC-CCCcccChhhhhcCCCccEEecCCcc-ccccch-hhcccccCceeeecC-cCCCCCCceEEeCCCcchhh
Q 044597 76 VRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSY-IDHTAD-EFWKMSKLRYLNFGA-ITLPAHPGKYSLHPCCSTEE 151 (341)
Q Consensus 76 ~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~-~~~lp~-~i~~L~~L~~L~l~~-~~lp~~i~~~~~~~~~~~~~ 151 (341)
..+++|+++ +.++.+|...|+++++|++|++++|. +..+|. .+..+++|++|++++ +.+. .. ++.
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~----------~i-~~~ 99 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT----------YI-DPD 99 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC----------EE-CTT
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee----------Ec-CHH
Confidence 378899998 68999998666999999999999996 999876 689999999999986 5553 22 222
Q ss_pred hhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCC---EEEEEeCCCCCCCCccCc--ccccccCCcc-EEEEEeecCCC
Q 044597 152 ILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLE---SLKLANESKMPRRSNTIL--AEYQFPPSLT-HLSFSNIELID 225 (341)
Q Consensus 152 ~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~---~L~l~~~~e~~~~l~~lp--~~~~lp~~L~-~L~l~~~~l~~ 225 (341)
.++.+++|++|+++++. ...+|. +..+++|+ .|++++|. .++.+| .+..+ ++|+ .|++++|.++.
T Consensus 100 ~f~~l~~L~~L~l~~n~---l~~lp~-~~~l~~L~~L~~L~l~~N~----~l~~i~~~~~~~l-~~L~~~L~l~~n~l~~ 170 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTG---LKMFPD-LTKVYSTDIFFILEITDNP----YMTSIPVNAFQGL-CNETLTLKLYNNGFTS 170 (239)
T ss_dssp SEECCTTCCEEEEEEEC---CCSCCC-CTTCCBCCSEEEEEEESCT----TCCEECTTTTTTT-BSSEEEEECCSCCCCE
T ss_pred HhCCCCCCCEEeCCCCC---Cccccc-cccccccccccEEECCCCc----chhhcCcccccch-hcceeEEEcCCCCCcc
Confidence 28899999999999995 334554 77888888 99999986 677777 57889 9999 99999999864
Q ss_pred CCCccCcCCCCCCeEEEEEe--CcEee-ecCCCC-CcccEEEEecCCCCCceeecCCCCCcccEEEEecCCC
Q 044597 226 DPMPALEKLPVLQVLKLKYL--GRKLA-CSSDGF-PKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAH 293 (341)
Q Consensus 226 ~~~~~l~~l~~L~~L~l~~~--~~~~~-~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~ 293 (341)
.+...+.. ++|+.|++..+ -..++ .....+ ++|++|++++ +.+..++.. .+++|+.|.+.++..
T Consensus 171 i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~~--~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 171 VQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSK--GLEHLKELIARNTWT 238 (239)
T ss_dssp ECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCCCT--TCTTCSEEECTTC--
T ss_pred cCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-CccccCChh--HhccCceeeccCccC
Confidence 44444555 89999999333 23332 234567 8999999998 567777755 799999999998864
No 73
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.68 E-value=2.1e-16 Score=153.87 Aligned_cols=98 Identities=19% Similarity=0.139 Sum_probs=75.1
Q ss_pred cccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccch-hhcccccCceeeecC---cCCCCCC------
Q 044597 70 PIMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTAD-EFWKMSKLRYLNFGA---ITLPAHP------ 138 (341)
Q Consensus 70 ~~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~-~i~~L~~L~~L~l~~---~~lp~~i------ 138 (341)
..+..+++|++|+++ +.+..+|+..|++|++|++|+|++|.+..+|. .|.+|++|++|++++ ..+|+..
T Consensus 70 ~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~ 149 (635)
T 4g8a_A 70 YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 149 (635)
T ss_dssp TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTT
T ss_pred HHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcc
Confidence 467888999999998 58888988766999999999999999998875 478999999999988 4444432
Q ss_pred -ceEEeCCCc----c-hhhhhCCCCCCceEEEEeec
Q 044597 139 -GKYSLHPCC----S-TEEILGRLPNLQNLRIWGDL 168 (341)
Q Consensus 139 -~~~~~~~~~----~-~~~~l~~l~~L~~L~l~~~~ 168 (341)
+.+.++++. . +.. ++.+++|++|+++++.
T Consensus 150 L~~L~Ls~N~l~~~~~~~~-~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 150 LKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNK 184 (635)
T ss_dssp CCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSC
T ss_pred cCeeccccCccccCCCchh-hccchhhhhhcccCcc
Confidence 666665421 0 233 6788889999887764
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.65 E-value=5.6e-17 Score=153.46 Aligned_cols=198 Identities=17% Similarity=0.132 Sum_probs=155.9
Q ss_pred cccChhhhhcCC----CccEEecCCccccccc-hhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceE
Q 044597 88 KSLPSSFLSSLL----NLYTLEMPFSYIDHTA-DEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNL 162 (341)
Q Consensus 88 ~~lp~~if~~L~----~L~~L~Ls~~~~~~lp-~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L 162 (341)
..+|..+ ..+. +|++|+|++|.+..+| ..++.+++|++|+++++.+.. ... ++.+++|++|
T Consensus 20 ~~l~~~l-~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~------------~~~-l~~l~~L~~L 85 (487)
T 3oja_A 20 SSLKQAL-ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE------------TLD-LESLSTLRTL 85 (487)
T ss_dssp TTHHHHH-HTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEE------------EEE-CTTCTTCCEE
T ss_pred hhhHHHH-HHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCC------------Ccc-cccCCCCCEE
Confidence 4556666 5554 8999999999988875 689999999999999854431 334 8899999999
Q ss_pred EEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCcccccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEE
Q 044597 163 RIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKL 242 (341)
Q Consensus 163 ~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l 242 (341)
++++|. ... +...++|+.|++++| .+..++. ..+ ++|+.|++++|.++......++.+++|++|++
T Consensus 86 ~Ls~N~---l~~----l~~~~~L~~L~L~~N-----~l~~~~~-~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 151 (487)
T 3oja_A 86 DLNNNY---VQE----LLVGPSIETLHAANN-----NISRVSC-SRG-QGKKNIYLANNKITMLRDLDEGCRSRVQYLDL 151 (487)
T ss_dssp ECCSSE---EEE----EEECTTCCEEECCSS-----CCCCEEE-CCC-SSCEEEECCSSCCCSGGGBCGGGGSSEEEEEC
T ss_pred EecCCc---CCC----CCCCCCcCEEECcCC-----cCCCCCc-ccc-CCCCEEECCCCCCCCCCchhhcCCCCCCEEEC
Confidence 999985 322 234489999999998 7777761 246 89999999999987766667899999999999
Q ss_pred EEeC-cE-eeecC-CCCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCccccccCCCCCCcEEEEecCC
Q 044597 243 KYLG-RK-LACSS-DGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLELWWPE 316 (341)
Q Consensus 243 ~~~~-~~-~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 316 (341)
+.+. .. .+... ..+++|++|+++++ .+..++.. ..+++|+.|++++|. +..+|..+..+++|+.|++++|.
T Consensus 152 s~N~l~~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~~~-~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~ 225 (487)
T 3oja_A 152 KLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQ-VVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNK 225 (487)
T ss_dssp TTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECC-CCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSC
T ss_pred CCCCCCCcChHHHhhhCCcccEEecCCC-cccccccc-ccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCc
Confidence 3332 22 22222 25899999999985 47777543 359999999999998 88888889999999999999987
No 75
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.64 E-value=5.9e-16 Score=145.12 Aligned_cols=218 Identities=20% Similarity=0.130 Sum_probs=103.7
Q ss_pred cCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCc---CC---CCCCceEEeC
Q 044597 72 MDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAI---TL---PAHPGKYSLH 144 (341)
Q Consensus 72 ~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~---~l---p~~i~~~~~~ 144 (341)
+..+++|++|+++ +.+..+|..+ .+|++|++++|.+..+| +++.+++|++|+++++ .+ |..++.+.++
T Consensus 149 ~~~l~~L~~L~l~~N~l~~lp~~~----~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~ 223 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLKKLPDLP----PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAG 223 (454)
T ss_dssp CTTCTTCCEEECCSSCCSCCCCCC----TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECC
T ss_pred cCCCCCCCEEECCCCcCcccCCCc----ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECc
Confidence 3444444444444 2444444322 24444555555444454 4566666666666662 22 2233555555
Q ss_pred CCc--chhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc-ccccccCCccEEEEEee
Q 044597 145 PCC--STEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL-AEYQFPPSLTHLSFSNI 221 (341)
Q Consensus 145 ~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp-~~~~lp~~L~~L~l~~~ 221 (341)
++. .+++ ++.+++|++|+++++. ...+|. .+++|+.|++++| .+..+| + . ++|+.|++++|
T Consensus 224 ~n~l~~lp~-~~~l~~L~~L~l~~N~---l~~l~~---~~~~L~~L~l~~N-----~l~~l~~~---~-~~L~~L~ls~N 287 (454)
T 1jl5_A 224 NNILEELPE-LQNLPFLTTIYADNNL---LKTLPD---LPPSLEALNVRDN-----YLTDLPEL---P-QSLTFLDVSEN 287 (454)
T ss_dssp SSCCSSCCC-CTTCTTCCEEECCSSC---CSSCCS---CCTTCCEEECCSS-----CCSCCCCC---C-TTCCEEECCSS
T ss_pred CCcCCcccc-cCCCCCCCEEECCCCc---CCcccc---cccccCEEECCCC-----cccccCcc---c-CcCCEEECcCC
Confidence 411 0334 5666777777776664 222221 2356666666665 555554 2 1 45556666555
Q ss_pred cCCCCC--Cc-------------cCcCC-CCCCeEEEEEeCcEeeecCCCCCcccEEEEecCCCCCceeecCCCCCcccE
Q 044597 222 ELIDDP--MP-------------ALEKL-PVLQVLKLKYLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLEC 285 (341)
Q Consensus 222 ~l~~~~--~~-------------~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~ 285 (341)
.++..+ ++ .+..+ ++|++|+++.+... .....+++|++|+++++ .+..++. .+++|++
T Consensus 288 ~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~--~lp~~~~~L~~L~L~~N-~l~~lp~---~l~~L~~ 361 (454)
T 1jl5_A 288 IFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI--ELPALPPRLERLIASFN-HLAEVPE---LPQNLKQ 361 (454)
T ss_dssp CCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCS--CCCCCCTTCCEEECCSS-CCSCCCC---CCTTCCE
T ss_pred ccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCccc--cccccCCcCCEEECCCC-ccccccc---hhhhccE
Confidence 543210 00 01122 35555555222111 11223567777777763 4555554 4678888
Q ss_pred EEEecCCCCC--ccccccCCC-------------CCCcEEEEecCC
Q 044597 286 VIINPCAHLK--RIPEQLWCL-------------KSLNKLELWWPE 316 (341)
Q Consensus 286 L~l~~c~~l~--~lp~~l~~l-------------~~L~~L~l~~~~ 316 (341)
|++++|+..+ .+|.+++++ ++|+.|++++|+
T Consensus 362 L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 362 LHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP 407 (454)
T ss_dssp EECCSSCCSSCCCCCTTCCEEECCC---------------------
T ss_pred EECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence 8888887433 466666666 778888888776
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.63 E-value=8.7e-16 Score=134.21 Aligned_cols=173 Identities=23% Similarity=0.264 Sum_probs=121.4
Q ss_pred hcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEEEeecchhhhHH
Q 044597 96 SSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLL 175 (341)
Q Consensus 96 ~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l 175 (341)
..+++|+.|++++|.+..++ ++..+++|++|+++++.+.. ++. ++.+++|++|+++++. ...+
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~------------~~~-l~~l~~L~~L~L~~n~---l~~~ 100 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHD------------ISA-LKELTNLTYLILTGNQ---LQSL 100 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCC------------CGG-GTTCTTCCEEECTTSC---CCCC
T ss_pred ccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCC------------chh-hcCCCCCCEEECCCCc---cCcc
Confidence 78899999999999888876 58889999999999855532 455 8888899999988875 2233
Q ss_pred H-HHhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeCcE-eee
Q 044597 176 S-KSLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLGRK-LAC 251 (341)
Q Consensus 176 ~-~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~-~~~ 251 (341)
+ ..++.+++|+.|++++| .++.+| .+..+ ++|++|++++|.++..+...++.+++|++|+++.+... ...
T Consensus 101 ~~~~~~~l~~L~~L~L~~n-----~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 174 (272)
T 3rfs_A 101 PNGVFDKLTNLKELVLVEN-----QLQSLPDGVFDKL-TNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE 174 (272)
T ss_dssp CTTTTTTCTTCCEEECTTS-----CCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred ChhHhcCCcCCCEEECCCC-----cCCccCHHHhccC-CCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCH
Confidence 3 33678888888888887 777776 46778 88888888888876555555777888888887333211 111
Q ss_pred -cCCCCCcccEEEEecCCCCCceeec-CCCCCcccEEEEecCC
Q 044597 252 -SSDGFPKLKVLHLKSMLWLEEWTMG-IKAMPKLECVIINPCA 292 (341)
Q Consensus 252 -~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~ 292 (341)
....+++|++|+++++ .+..++.. .+.+++|+.|++.+|+
T Consensus 175 ~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 175 GVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred HHhcCCccCCEEECCCC-cCCccCHHHHhCCcCCCEEEccCCC
Confidence 1245667777777663 34444432 3456667777776665
No 77
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.62 E-value=2e-17 Score=148.94 Aligned_cols=199 Identities=17% Similarity=0.121 Sum_probs=119.2
Q ss_pred ceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccc--cchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhh
Q 044597 76 VRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDH--TADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEI 152 (341)
Q Consensus 76 ~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~--lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~ 152 (341)
.+++.|++. +.+...+..+ .++++|++|++++|.+.. +|..+..+++|++|+++++.+. +.. +..
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~---------~~~-~~~- 137 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLS---------DPI-VNT- 137 (336)
T ss_dssp TTCSEEECTTCEECSCCCSC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCC---------HHH-HHH-
T ss_pred ccceEEEcCCccccccchhh-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccC---------HHH-HHH-
Confidence 566777776 3555555556 667777777777776543 6666777777777777763332 123 444
Q ss_pred hCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCcc--Cc-ccccccC-CccEEEEEeec--CCCC
Q 044597 153 LGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNT--IL-AEYQFPP-SLTHLSFSNIE--LIDD 226 (341)
Q Consensus 153 l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~--lp-~~~~lp~-~L~~L~l~~~~--l~~~ 226 (341)
++.+++|++|++++|..-....++..+..+++|+.|++++|. .++. ++ .+..+ + +|++|++++|. ++..
T Consensus 138 l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~----~l~~~~~~~~~~~l-~~~L~~L~l~~~~~~~~~~ 212 (336)
T 2ast_B 138 LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF----DFTEKHVQVAVAHV-SETITQLNLSGYRKNLQKS 212 (336)
T ss_dssp HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCT----TCCHHHHHHHHHHS-CTTCCEEECCSCGGGSCHH
T ss_pred HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCC----CcChHHHHHHHHhc-ccCCCEEEeCCCcccCCHH
Confidence 777777777777776321222456666777777777777763 3433 44 55666 5 77777777773 3212
Q ss_pred C-CccCcCCCCCCeEEEEEeC---cEeeecCCCCCcccEEEEecCCCCCcee-ecCCCCCcccEEEEecC
Q 044597 227 P-MPALEKLPVLQVLKLKYLG---RKLACSSDGFPKLKVLHLKSMLWLEEWT-MGIKAMPKLECVIINPC 291 (341)
Q Consensus 227 ~-~~~l~~l~~L~~L~l~~~~---~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~c 291 (341)
. ...+..+++|++|+++.+. .........+++|++|+++++..+.... ...+.+++|+.|++.+|
T Consensus 213 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 213 DLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp HHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred HHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 2 2234567777777772222 1122233456777777777765332221 12345777777777777
No 78
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.62 E-value=1.7e-17 Score=149.32 Aligned_cols=217 Identities=17% Similarity=0.206 Sum_probs=128.2
Q ss_pred eeeeccCC-CCcccChhhhhcC--CCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCC-cchhhhh
Q 044597 78 LRENSIIP-SLKSLPSSFLSSL--LNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPC-CSTEEIL 153 (341)
Q Consensus 78 Lr~L~l~~-~~~~lp~~if~~L--~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~-~~~~~~l 153 (341)
++.++++. .+. |..+ +++ +++++|++++|.+...+..+..+++|++|+++++. +.+. . +.. +
T Consensus 49 ~~~l~l~~~~~~--~~~~-~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~---------l~~~~~-~~~-~ 114 (336)
T 2ast_B 49 WQTLDLTGKNLH--PDVT-GRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSV---------IEVSTL-HGI-L 114 (336)
T ss_dssp SSEEECTTCBCC--HHHH-HHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCE---------ECHHHH-HHH-H
T ss_pred heeeccccccCC--HHHH-HhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCC---------cCHHHH-HHH-H
Confidence 34555542 222 3333 666 77777777777766666666677777777777621 1112 2 333 6
Q ss_pred CCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCcc--Cc-ccccccCCccEEEEEee-cCCCCC-C
Q 044597 154 GRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNT--IL-AEYQFPPSLTHLSFSNI-ELIDDP-M 228 (341)
Q Consensus 154 ~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~--lp-~~~~lp~~L~~L~l~~~-~l~~~~-~ 228 (341)
+.+++|++|+++++. .....+..++.+++|+.|++++|. .++. ++ .+..+ ++|++|++++| .++... .
T Consensus 115 ~~~~~L~~L~L~~~~--l~~~~~~~l~~~~~L~~L~L~~~~----~l~~~~l~~~~~~~-~~L~~L~l~~~~~l~~~~~~ 187 (336)
T 2ast_B 115 SQCSKLQNLSLEGLR--LSDPIVNTLAKNSNLVRLNLSGCS----GFSEFALQTLLSSC-SRLDELNLSWCFDFTEKHVQ 187 (336)
T ss_dssp TTBCCCSEEECTTCB--CCHHHHHHHTTCTTCSEEECTTCB----SCCHHHHHHHHHHC-TTCCEEECCCCTTCCHHHHH
T ss_pred hhCCCCCEEeCcCcc--cCHHHHHHHhcCCCCCEEECCCCC----CCCHHHHHHHHhcC-CCCCEEcCCCCCCcChHHHH
Confidence 777777777777764 334556667777777777777763 3442 45 45566 77777777777 553322 2
Q ss_pred ccCcCCC-CCCeEEEEEeC-----cEeeecCCCCCcccEEEEecCCCCC-ceeecCCCCCcccEEEEecCCCCCcc-ccc
Q 044597 229 PALEKLP-VLQVLKLKYLG-----RKLACSSDGFPKLKVLHLKSMLWLE-EWTMGIKAMPKLECVIINPCAHLKRI-PEQ 300 (341)
Q Consensus 229 ~~l~~l~-~L~~L~l~~~~-----~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~ 300 (341)
..+..++ +|++|+++.+. ..+......+++|++|+++++..++ ..+...+.+++|++|++.+|..+... ...
T Consensus 188 ~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 267 (336)
T 2ast_B 188 VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE 267 (336)
T ss_dssp HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGG
T ss_pred HHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHH
Confidence 3356677 77777773221 1112222356777777777765443 23334456677777777777633211 113
Q ss_pred cCCCCCCcEEEEecC
Q 044597 301 LWCLKSLNKLELWWP 315 (341)
Q Consensus 301 l~~l~~L~~L~l~~~ 315 (341)
+.++++|+.|++++|
T Consensus 268 l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 268 LGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGCTTCCEEECTTS
T ss_pred HhcCCCCCEEeccCc
Confidence 556777777777776
No 79
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.61 E-value=3.1e-15 Score=144.96 Aligned_cols=205 Identities=20% Similarity=0.090 Sum_probs=138.8
Q ss_pred ceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCc---CCCC---CCceEEeCCCcc
Q 044597 76 VRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAI---TLPA---HPGKYSLHPCCS 148 (341)
Q Consensus 76 ~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~---~lp~---~i~~~~~~~~~~ 148 (341)
.+|++|+++ +.++.+|. .+++|++|+|++|.+..+|. .+++|++|+++++ .+|. .++.+.++++.
T Consensus 61 ~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~~l~~L~~L~L~~N~- 132 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQ- 132 (622)
T ss_dssp TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCCCCTTCCEEECCSSC-
T ss_pred CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCCCCCCcCEEECCCCC-
Confidence 678888887 57888886 46888999999998888886 7788999998882 2332 22555555433
Q ss_pred hhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCcccccccCCccEEEEEeecCCCCCC
Q 044597 149 TEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSNIELIDDPM 228 (341)
Q Consensus 149 ~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l~~~~l~~~~~ 228 (341)
+...-..+++|++|++++|. ...+| ..+++|+.|++++| .++.+| ..+ ++|+.|++++|.++..+
T Consensus 133 l~~lp~~l~~L~~L~Ls~N~---l~~l~---~~~~~L~~L~L~~N-----~l~~l~--~~~-~~L~~L~Ls~N~l~~l~- 197 (622)
T 3g06_A 133 LTSLPVLPPGLQELSVSDNQ---LASLP---ALPSELCKLWAYNN-----QLTSLP--MLP-SGLQELSVSDNQLASLP- 197 (622)
T ss_dssp CSCCCCCCTTCCEEECCSSC---CSCCC---CCCTTCCEEECCSS-----CCSCCC--CCC-TTCCEEECCSSCCSCCC-
T ss_pred CCcCCCCCCCCCEEECcCCc---CCCcC---CccCCCCEEECCCC-----CCCCCc--ccC-CCCcEEECCCCCCCCCC-
Confidence 22211224667777777664 22222 13456777777766 666666 234 77888888888764322
Q ss_pred ccCcCCCCCCeEEEEEeCcEeeecCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCccccccCCCCCCc
Q 044597 229 PALEKLPVLQVLKLKYLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLN 308 (341)
Q Consensus 229 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~ 308 (341)
. .+++|+.|++..+... .....+++|++|+++++ .+..++ ..+++|+.|++++|. ++.+|. .+++|+
T Consensus 198 -~--~~~~L~~L~L~~N~l~--~l~~~~~~L~~L~Ls~N-~L~~lp---~~l~~L~~L~Ls~N~-L~~lp~---~~~~L~ 264 (622)
T 3g06_A 198 -T--LPSELYKLWAYNNRLT--SLPALPSGLKELIVSGN-RLTSLP---VLPSELKELMVSGNR-LTSLPM---LPSGLL 264 (622)
T ss_dssp -C--CCTTCCEEECCSSCCS--SCCCCCTTCCEEECCSS-CCSCCC---CCCTTCCEEECCSSC-CSCCCC---CCTTCC
T ss_pred -C--ccchhhEEECcCCccc--ccCCCCCCCCEEEccCC-ccCcCC---CCCCcCcEEECCCCC-CCcCCc---ccccCc
Confidence 1 2467888877332211 11234688999999884 577766 457899999999996 888886 578999
Q ss_pred EEEEecCC
Q 044597 309 KLELWWPE 316 (341)
Q Consensus 309 ~L~l~~~~ 316 (341)
.|++++|.
T Consensus 265 ~L~Ls~N~ 272 (622)
T 3g06_A 265 SLSVYRNQ 272 (622)
T ss_dssp EEECCSSC
T ss_pred EEeCCCCC
Confidence 99999986
No 80
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.61 E-value=2.2e-17 Score=151.62 Aligned_cols=229 Identities=15% Similarity=0.137 Sum_probs=153.8
Q ss_pred cccCCcceeeeeccCC-CCcc-----cChhhhhcCCCccEEecCCcccc----ccchhh-------cccccCceeeecCc
Q 044597 70 PIMDQEVRLRENSIIP-SLKS-----LPSSFLSSLLNLYTLEMPFSYID----HTADEF-------WKMSKLRYLNFGAI 132 (341)
Q Consensus 70 ~~~~~l~~Lr~L~l~~-~~~~-----lp~~if~~L~~L~~L~Ls~~~~~----~lp~~i-------~~L~~L~~L~l~~~ 132 (341)
..+..+++|+.|+++. .+.. ++..+ .++++|++|+|++|.+. .+|..+ ..+++|++|+++++
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l-~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n 104 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENI-ASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 104 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTT-TTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHH-HhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence 3445567788888873 4443 33345 78899999999887544 334444 67889999999884
Q ss_pred CCCCCCceEEeCC--CcchhhhhCCCCCCceEEEEeecchh--hhHHHHHhcCC---------CCCCEEEEEeCCCCCCC
Q 044597 133 TLPAHPGKYSLHP--CCSTEEILGRLPNLQNLRIWGDLSYY--QSLLSKSLCRL---------SCLESLKLANESKMPRR 199 (341)
Q Consensus 133 ~lp~~i~~~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~l~~~l~~l---------~~L~~L~l~~~~e~~~~ 199 (341)
.+.. .+ .. +.. +..+++|++|++++|.... ...++..+..+ ++|+.|++++| .
T Consensus 105 ~l~~-------~~~~~l-~~~-l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n-----~ 170 (386)
T 2ca6_A 105 AFGP-------TAQEPL-IDF-LSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-----R 170 (386)
T ss_dssp CCCT-------TTHHHH-HHH-HHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-----C
T ss_pred cCCH-------HHHHHH-HHH-HHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-----C
Confidence 4331 00 12 334 7888999999999886321 23444455555 89999999887 5
Q ss_pred Cc--cCc----ccccccCCccEEEEEeecCCCC----CCc-cCcCCCCCCeEEEEEeCc------EeeecCCCCCcccEE
Q 044597 200 SN--TIL----AEYQFPPSLTHLSFSNIELIDD----PMP-ALEKLPVLQVLKLKYLGR------KLACSSDGFPKLKVL 262 (341)
Q Consensus 200 l~--~lp----~~~~lp~~L~~L~l~~~~l~~~----~~~-~l~~l~~L~~L~l~~~~~------~~~~~~~~~~~L~~L 262 (341)
++ .+| .+..+ ++|++|++++|.++.. ..+ .+..+++|++|+++.+.. .++.....+++|++|
T Consensus 171 l~~~~~~~l~~~l~~~-~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L 249 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSH-RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 249 (386)
T ss_dssp CTGGGHHHHHHHHHHC-TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred CCcHHHHHHHHHHHhC-CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEE
Confidence 54 344 23467 7899999999987422 233 677889999999843332 122334567889999
Q ss_pred EEecCCCCCce-----eecC--CCCCcccEEEEecCCCCCc-----ccccc-CCCCCCcEEEEecCC
Q 044597 263 HLKSMLWLEEW-----TMGI--KAMPKLECVIINPCAHLKR-----IPEQL-WCLKSLNKLELWWPE 316 (341)
Q Consensus 263 ~l~~~~~l~~~-----~~~~--~~l~~L~~L~l~~c~~l~~-----lp~~l-~~l~~L~~L~l~~~~ 316 (341)
+++++. +... +... +.+++|+.|++++|. ++. +|..+ .++++|++|++++|+
T Consensus 250 ~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 250 GLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp ECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred ECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 998854 4433 2222 348899999999998 565 77777 558999999999876
No 81
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.61 E-value=8.7e-16 Score=135.55 Aligned_cols=168 Identities=21% Similarity=0.185 Sum_probs=124.4
Q ss_pred ccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcch
Q 044597 71 IMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCST 149 (341)
Q Consensus 71 ~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~ 149 (341)
....+.+|+.|+++ +.+..+|. + +.+++|++|++++|.+..++. +..+++|++|+++++.+.. +
T Consensus 41 ~~~~l~~L~~L~l~~~~i~~~~~-~-~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~------------~ 105 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSDIKSVQG-I-QYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD------------L 105 (291)
T ss_dssp CHHHHHTCCEEECTTSCCCCCTT-G-GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC------------G
T ss_pred chhhcCcccEEEccCCCcccChh-H-hcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC------------C
Confidence 34567888999997 57778864 6 889999999999998888877 8899999999998855532 6
Q ss_pred hhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCcccccccCCccEEEEEeecCCCCCCc
Q 044597 150 EEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSNIELIDDPMP 229 (341)
Q Consensus 150 ~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l~~~~l~~~~~~ 229 (341)
+. ++.+++|++|++++|.... + ..+..+++|+.|++++| .++.++.+..+ ++|+.|++++|.++...
T Consensus 106 ~~-l~~l~~L~~L~L~~n~i~~---~-~~l~~l~~L~~L~l~~n-----~l~~~~~l~~l-~~L~~L~L~~N~l~~~~-- 172 (291)
T 1h6t_A 106 SS-LKDLKKLKSLSLEHNGISD---I-NGLVHLPQLESLYLGNN-----KITDITVLSRL-TKLDTLSLEDNQISDIV-- 172 (291)
T ss_dssp GG-GTTCTTCCEEECTTSCCCC---C-GGGGGCTTCCEEECCSS-----CCCCCGGGGGC-TTCSEEECCSSCCCCCG--
T ss_pred hh-hccCCCCCEEECCCCcCCC---C-hhhcCCCCCCEEEccCC-----cCCcchhhccC-CCCCEEEccCCccccch--
Confidence 66 8888899999988885322 2 35778888888888887 67777766778 88888888888874432
Q ss_pred cCcCCCCCCeEEEEEeCcEeeecCCCCCcccEEEEec
Q 044597 230 ALEKLPVLQVLKLKYLGRKLACSSDGFPKLKVLHLKS 266 (341)
Q Consensus 230 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~ 266 (341)
.+..+++|+.|+++.+..........+++|+.|++++
T Consensus 173 ~l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~ 209 (291)
T 1h6t_A 173 PLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFS 209 (291)
T ss_dssp GGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEE
T ss_pred hhcCCCccCEEECCCCcCCCChhhccCCCCCEEECcC
Confidence 3777888888888333322222345566777777766
No 82
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.60 E-value=1.5e-15 Score=134.07 Aligned_cols=143 Identities=22% Similarity=0.266 Sum_probs=61.7
Q ss_pred cCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchh
Q 044597 72 MDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTE 150 (341)
Q Consensus 72 ~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~ 150 (341)
+..+.+|++|+++ +.+..++. + +++++|++|++++|.+..+|. +..+++|++|+++++.+.. ++
T Consensus 64 ~~~l~~L~~L~L~~n~l~~~~~-l-~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~~------------~~ 128 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKLTDIKP-L-ANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISD------------IN 128 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-G-TTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCCC------------CG
T ss_pred HhcCCCCCEEEccCCccCCCcc-c-ccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcCCC------------Ch
Confidence 3344444444444 34444443 3 444445555554444444432 4444444444444432221 22
Q ss_pred hhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCcccccccCCccEEEEEeecCCCCCCcc
Q 044597 151 EILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSNIELIDDPMPA 230 (341)
Q Consensus 151 ~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l~~~~l~~~~~~~ 230 (341)
. ++.+++|+.|++++|... .+ ..+..+++|+.|++++| .+..++.+..+ ++|+.|++++|.++. ++.
T Consensus 129 ~-l~~l~~L~~L~l~~n~l~---~~-~~l~~l~~L~~L~L~~N-----~l~~~~~l~~l-~~L~~L~L~~N~i~~--l~~ 195 (291)
T 1h6t_A 129 G-LVHLPQLESLYLGNNKIT---DI-TVLSRLTKLDTLSLEDN-----QISDIVPLAGL-TKLQNLYLSKNHISD--LRA 195 (291)
T ss_dssp G-GGGCTTCCEEECCSSCCC---CC-GGGGGCTTCSEEECCSS-----CCCCCGGGTTC-TTCCEEECCSSCCCB--CGG
T ss_pred h-hcCCCCCCEEEccCCcCC---cc-hhhccCCCCCEEEccCC-----ccccchhhcCC-CccCEEECCCCcCCC--Chh
Confidence 2 444444444444444311 11 23444444444444444 34433323344 444444444444322 223
Q ss_pred CcCCCCCCeEEE
Q 044597 231 LEKLPVLQVLKL 242 (341)
Q Consensus 231 l~~l~~L~~L~l 242 (341)
+..+++|+.|++
T Consensus 196 l~~l~~L~~L~l 207 (291)
T 1h6t_A 196 LAGLKNLDVLEL 207 (291)
T ss_dssp GTTCTTCSEEEE
T ss_pred hccCCCCCEEEC
Confidence 444444444444
No 83
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.60 E-value=1.1e-15 Score=138.63 Aligned_cols=216 Identities=17% Similarity=0.107 Sum_probs=156.7
Q ss_pred ceeeeeccC-CCCcccChhhhhcCCCccEEecCCccc-cccch-hhcccccCcee-eecCcCCCCCCceEEeCCCcchhh
Q 044597 76 VRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYI-DHTAD-EFWKMSKLRYL-NFGAITLPAHPGKYSLHPCCSTEE 151 (341)
Q Consensus 76 ~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~-~~lp~-~i~~L~~L~~L-~l~~~~lp~~i~~~~~~~~~~~~~ 151 (341)
.+++.|+++ +.++.+|...|+++++|++|+|++|.+ +.+|. .|.++++++.+ .+.++.+- .. +++
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~----------~l-~~~ 98 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL----------YI-NPE 98 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC----------EE-CTT
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc----------cc-Cch
Confidence 467888887 689999987779999999999999976 55664 46788887764 44332221 22 222
Q ss_pred hhCCCCCCceEEEEeecchhhhHHHH-HhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCCCC
Q 044597 152 ILGRLPNLQNLRIWGDLSYYQSLLSK-SLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDDPM 228 (341)
Q Consensus 152 ~l~~l~~L~~L~l~~~~~~~~~~l~~-~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~ 228 (341)
+++.+++|++|+++++. ...++. .+....++..|++..+. .+..+| .+..++..++.|++++|.++..+.
T Consensus 99 ~f~~l~~L~~L~l~~n~---l~~~~~~~~~~~~~l~~l~l~~~~----~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~ 171 (350)
T 4ay9_X 99 AFQNLPNLQYLLISNTG---IKHLPDVHKIHSLQKVLLDIQDNI----NIHTIERNSFVGLSFESVILWLNKNGIQEIHN 171 (350)
T ss_dssp SBCCCTTCCEEEEEEEC---CSSCCCCTTCCBSSCEEEEEESCT----TCCEECTTSSTTSBSSCEEEECCSSCCCEECT
T ss_pred hhhhccccccccccccc---cccCCchhhcccchhhhhhhcccc----ccccccccchhhcchhhhhhccccccccCCCh
Confidence 28999999999999985 222222 34455677888887755 777777 555553678999999999854443
Q ss_pred ccCcCCCCCCeEEE-EEeC-cEeee-cCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCccccccCCCC
Q 044597 229 PALEKLPVLQVLKL-KYLG-RKLAC-SSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLK 305 (341)
Q Consensus 229 ~~l~~l~~L~~L~l-~~~~-~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~ 305 (341)
. ....++|+.|.+ .++. ..++. ....+++|++|++++ +.++.+|.. .+.+|+.|.+.++.+++.+|. +.+++
T Consensus 172 ~-~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~-N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~-l~~l~ 246 (350)
T 4ay9_X 172 S-AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR-TRIHSLPSY--GLENLKKLRARSTYNLKKLPT-LEKLV 246 (350)
T ss_dssp T-SSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTT-SCCCCCCSS--SCTTCCEEECTTCTTCCCCCC-TTTCC
T ss_pred h-hccccchhHHhhccCCcccCCCHHHhccCcccchhhcCC-CCcCccChh--hhccchHhhhccCCCcCcCCC-chhCc
Confidence 3 334567888888 2222 22332 246789999999998 468888754 688999999999999999995 78899
Q ss_pred CCcEEEEec
Q 044597 306 SLNKLELWW 314 (341)
Q Consensus 306 ~L~~L~l~~ 314 (341)
+|+.+++.+
T Consensus 247 ~L~~l~l~~ 255 (350)
T 4ay9_X 247 ALMEASLTY 255 (350)
T ss_dssp SCCEEECSC
T ss_pred ChhhCcCCC
Confidence 999999975
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.60 E-value=5.7e-16 Score=138.00 Aligned_cols=200 Identities=17% Similarity=0.110 Sum_probs=138.1
Q ss_pred cCCCccEEecCCcccc-ccchhh--cccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEEEeecchhhh
Q 044597 97 SLLNLYTLEMPFSYID-HTADEF--WKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQS 173 (341)
Q Consensus 97 ~L~~L~~L~Ls~~~~~-~lp~~i--~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 173 (341)
.+++|++|++++|.+. ..|..+ ..+++|++|+++++.+... ........ +..+++|++|++++|. ...
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~------~~~~~~~~-~~~~~~L~~L~Ls~n~--l~~ 159 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATG------RSWLAELQ-QWLKPGLKVLSIAQAH--SPA 159 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSST------TSSHHHHH-TTBCSCCCEEEEECCS--SCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccch------hhhhHHHH-hhhccCCCEEEeeCCC--cch
Confidence 4567999999999765 456666 8899999999988444310 00110122 5678899999999885 223
Q ss_pred HHHHHhcCCCCCCEEEEEeCCCCCCCCcc---Cc---ccccccCCccEEEEEeecCCCCCCc---cCcCCCCCCeEEEEE
Q 044597 174 LLSKSLCRLSCLESLKLANESKMPRRSNT---IL---AEYQFPPSLTHLSFSNIELIDDPMP---ALEKLPVLQVLKLKY 244 (341)
Q Consensus 174 ~l~~~l~~l~~L~~L~l~~~~e~~~~l~~---lp---~~~~lp~~L~~L~l~~~~l~~~~~~---~l~~l~~L~~L~l~~ 244 (341)
..+..++.+++|+.|++++| .+.. ++ ++..+ ++|++|++++|.++..+.. .++.+++|++|++++
T Consensus 160 ~~~~~~~~l~~L~~L~Ls~N-----~l~~~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~ 233 (310)
T 4glp_A 160 FSCEQVRAFPALTSLDLSDN-----PGLGERGLMAALCPHKF-PAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSH 233 (310)
T ss_dssp CCTTSCCCCTTCCEEECCSC-----TTCHHHHHHTTSCTTSS-CCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTT
T ss_pred hhHHHhccCCCCCEEECCCC-----CCccchhhhHHHhhhcC-CCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCC
Confidence 33356788899999999887 4432 32 44678 8899999999987421111 246778999999933
Q ss_pred eCcE-e-eecCCC---CCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCccccccCCCCCCcEEEEecCC
Q 044597 245 LGRK-L-ACSSDG---FPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLELWWPE 316 (341)
Q Consensus 245 ~~~~-~-~~~~~~---~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 316 (341)
+... . +..... +++|++|++++ +.++.+|... +++|+.|++++|. +..+|. ...+++|+.|++++|+
T Consensus 234 N~l~~~~p~~~~~~~~~~~L~~L~Ls~-N~l~~lp~~~--~~~L~~L~Ls~N~-l~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 234 NSLRATVNPSAPRCMWSSALNSLNLSF-AGLEQVPKGL--PAKLRVLDLSSNR-LNRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp SCCCCCCCSCCSSCCCCTTCCCEECCS-SCCCSCCSCC--CSCCSCEECCSCC-CCSCCC-TTSCCCCSCEECSSTT
T ss_pred CCCCccchhhHHhccCcCcCCEEECCC-CCCCchhhhh--cCCCCEEECCCCc-CCCCch-hhhCCCccEEECcCCC
Confidence 3211 1 222233 37999999988 4577776554 4899999999998 777775 6789999999999987
No 85
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.59 E-value=8.8e-15 Score=132.55 Aligned_cols=213 Identities=15% Similarity=0.141 Sum_probs=155.3
Q ss_pred eeccC-CCCcccChhhhhcCCCccEEecCCccccccch-hhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCC
Q 044597 80 ENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTAD-EFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLP 157 (341)
Q Consensus 80 ~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~-~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~ 157 (341)
.++.+ ++++++|..+ .+++++|+|++|.+..+|. .|.+|++|++|+|+++.+-. .. +..++.+++
T Consensus 13 ~v~C~~~~Lt~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~---------~i-~~~~f~~L~ 79 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE---------VI-EADVFSNLP 79 (350)
T ss_dssp EEEEESTTCCSCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCC---------EE-CTTSBCSCT
T ss_pred EEEecCCCCCccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCC---------cc-ChhHhhcch
Confidence 34444 5789999887 3689999999999999986 58999999999999844321 12 222278899
Q ss_pred CCceEEEEeecchhhhHH-HHHhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeec-CCCCCCccCcC
Q 044597 158 NLQNLRIWGDLSYYQSLL-SKSLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIE-LIDDPMPALEK 233 (341)
Q Consensus 158 ~L~~L~l~~~~~~~~~~l-~~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~-l~~~~~~~l~~ 233 (341)
+++++....+. ....+ +..+..+++|+.|+++++ .+..+| ..... .++..+++.++. +...+...+..
T Consensus 80 ~l~~~l~~~~N--~l~~l~~~~f~~l~~L~~L~l~~n-----~l~~~~~~~~~~~-~~l~~l~l~~~~~i~~l~~~~f~~ 151 (350)
T 4ay9_X 80 KLHEIRIEKAN--NLLYINPEAFQNLPNLQYLLISNT-----GIKHLPDVHKIHS-LQKVLLDIQDNINIHTIERNSFVG 151 (350)
T ss_dssp TCCEEEEEEET--TCCEECTTSBCCCTTCCEEEEEEE-----CCSSCCCCTTCCB-SSCEEEEEESCTTCCEECTTSSTT
T ss_pred hhhhhhcccCC--cccccCchhhhhcccccccccccc-----ccccCCchhhccc-chhhhhhhccccccccccccchhh
Confidence 98876554432 34444 356789999999999998 788887 44455 678888887754 44344445566
Q ss_pred CC-CCCeEEEEEeC-cEeeecCCCCCcccEEEEecCCCCCceeecC-CCCCcccEEEEecCCCCCccccccCCCCCCcEE
Q 044597 234 LP-VLQVLKLKYLG-RKLACSSDGFPKLKVLHLKSMLWLEEWTMGI-KAMPKLECVIINPCAHLKRIPEQLWCLKSLNKL 310 (341)
Q Consensus 234 l~-~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L 310 (341)
++ .++.|+++.+. ..+........+|++|.+.+++.++.++... ..+++|+.|++++|. ++.+|.+ .+.+|+.|
T Consensus 152 ~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~~--~~~~L~~L 228 (350)
T 4ay9_X 152 LSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSY--GLENLKKL 228 (350)
T ss_dssp SBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCSS--SCTTCCEE
T ss_pred cchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccChh--hhccchHh
Confidence 54 68889884433 3343334456789999999888899998653 679999999999997 8999864 36778888
Q ss_pred EEecCC
Q 044597 311 ELWWPE 316 (341)
Q Consensus 311 ~l~~~~ 316 (341)
.+.++.
T Consensus 229 ~~l~~~ 234 (350)
T 4ay9_X 229 RARSTY 234 (350)
T ss_dssp ECTTCT
T ss_pred hhccCC
Confidence 877775
No 86
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.58 E-value=4.5e-15 Score=123.24 Aligned_cols=147 Identities=17% Similarity=0.147 Sum_probs=116.7
Q ss_pred CCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhh
Q 044597 73 DQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEE 151 (341)
Q Consensus 73 ~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~ 151 (341)
..+.+|+.|+++ +.+..+| .+ ..+++|++|++++|.+..++ .+..+++|++|+++++.+.. .. +..
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l-~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~---------~~-~~~ 107 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GI-EYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTS---------DK-IPN 107 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TG-GGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBG---------GG-SCC
T ss_pred hhcCCccEEeccCCCccChH-HH-hcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCc---------cc-Chh
Confidence 567788899987 5888888 67 99999999999999777665 68889999999998844431 22 455
Q ss_pred hhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCcccccccCCccEEEEEeecCCCCCCccC
Q 044597 152 ILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSNIELIDDPMPAL 231 (341)
Q Consensus 152 ~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l~~~~l~~~~~~~l 231 (341)
++.+++|++|++++|. .....+..++.+++|+.|++++|. .++.+|.+..+ ++|+.|++++|.++. ++.+
T Consensus 108 -l~~l~~L~~L~Ls~n~--i~~~~~~~l~~l~~L~~L~L~~n~----~i~~~~~l~~l-~~L~~L~l~~n~i~~--~~~l 177 (197)
T 4ezg_A 108 -LSGLTSLTLLDISHSA--HDDSILTKINTLPKVNSIDLSYNG----AITDIMPLKTL-PELKSLNIQFDGVHD--YRGI 177 (197)
T ss_dssp -CTTCTTCCEEECCSSB--CBGGGHHHHTTCSSCCEEECCSCT----BCCCCGGGGGC-SSCCEEECTTBCCCC--CTTG
T ss_pred -hcCCCCCCEEEecCCc--cCcHhHHHHhhCCCCCEEEccCCC----CccccHhhcCC-CCCCEEECCCCCCcC--hHHh
Confidence 8889999999999886 333456778899999999999883 37788866788 899999999998754 3377
Q ss_pred cCCCCCCeEEE
Q 044597 232 EKLPVLQVLKL 242 (341)
Q Consensus 232 ~~l~~L~~L~l 242 (341)
..+++|+.|++
T Consensus 178 ~~l~~L~~L~l 188 (197)
T 4ezg_A 178 EDFPKLNQLYA 188 (197)
T ss_dssp GGCSSCCEEEE
T ss_pred ccCCCCCEEEe
Confidence 88888888888
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.58 E-value=4e-16 Score=139.00 Aligned_cols=197 Identities=19% Similarity=0.232 Sum_probs=96.8
Q ss_pred ceeeeeccC-CCCc-ccChhhh-hcCCCccEEecCCcccccc-c----hhhcccccCceeeecCcCCCCCCceEEeCCCc
Q 044597 76 VRLRENSII-PSLK-SLPSSFL-SSLLNLYTLEMPFSYIDHT-A----DEFWKMSKLRYLNFGAITLPAHPGKYSLHPCC 147 (341)
Q Consensus 76 ~~Lr~L~l~-~~~~-~lp~~if-~~L~~L~~L~Ls~~~~~~l-p----~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~ 147 (341)
.+|++|+++ +.+. ..|..+| +++++|++|++++|.+... | ..+..+++|++|+++++.+. ..
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~----------~~ 160 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSP----------AF 160 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSC----------CC
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcc----------hh
Confidence 345666665 3443 2333333 5566666666666654431 1 23345666666666653332 11
Q ss_pred chhhhhCCCCCCceEEEEeecchhhhHHHHH--hcCCCCCCEEEEEeCCCCCCCCccCc-c----cccccCCccEEEEEe
Q 044597 148 STEEILGRLPNLQNLRIWGDLSYYQSLLSKS--LCRLSCLESLKLANESKMPRRSNTIL-A----EYQFPPSLTHLSFSN 220 (341)
Q Consensus 148 ~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~--l~~l~~L~~L~l~~~~e~~~~l~~lp-~----~~~lp~~L~~L~l~~ 220 (341)
.+.. ++.+++|++|++++|.......++.. ++.+++|+.|++++| .++.+| . +..+ ++|++|++++
T Consensus 161 ~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-----~l~~l~~~~~~l~~~l-~~L~~L~Ls~ 233 (310)
T 4glp_A 161 SCEQ-VRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-----GMETPTGVCAALAAAG-VQPHSLDLSH 233 (310)
T ss_dssp CTTS-CCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-----CCCCHHHHHHHHHHHT-CCCSSEECTT
T ss_pred hHHH-hccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-----CCCchHHHHHHHHhcC-CCCCEEECCC
Confidence 0223 55666666666666542122223222 245666666666665 554443 1 2345 5666666666
Q ss_pred ecCCCCCCccCcCC---CCCCeEEEEEeCcEeeecCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCC
Q 044597 221 IELIDDPMPALEKL---PVLQVLKLKYLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCA 292 (341)
Q Consensus 221 ~~l~~~~~~~l~~l---~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~ 292 (341)
|.+....++.++.+ ++|++|+++.+... .....-+++|++|++++ +.+..++. ...+++|+.|++++|+
T Consensus 234 N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~L~~L~Ls~-N~l~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 234 NSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLPAKLRVLDLSS-NRLNRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp SCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCCSCCSCEECCS-CCCCSCCC-TTSCCCCSCEECSSTT
T ss_pred CCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhcCCCCEEECCC-CcCCCCch-hhhCCCccEEECcCCC
Confidence 66544433333333 56666666322211 11112235666666665 33444433 3455666666666665
No 88
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.56 E-value=3.3e-15 Score=144.48 Aligned_cols=169 Identities=21% Similarity=0.182 Sum_probs=131.8
Q ss_pred ccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcch
Q 044597 71 IMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCST 149 (341)
Q Consensus 71 ~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~ 149 (341)
.+..+.+|+.|+++ +.+..+| .+ +.+++|++|+|++|.+..+|. +..+++|++|+|+++.+.. +
T Consensus 38 ~~~~L~~L~~L~l~~n~i~~l~-~l-~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~------------l 102 (605)
T 1m9s_A 38 TQNELNSIDQIIANNSDIKSVQ-GI-QYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKD------------L 102 (605)
T ss_dssp CHHHHTTCCCCBCTTCCCCCCT-TG-GGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC------------C
T ss_pred chhcCCCCCEEECcCCCCCCCh-HH-ccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCC------------C
Confidence 35567889999998 5788887 47 999999999999999988886 9999999999999855532 5
Q ss_pred hhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCcccccccCCccEEEEEeecCCCCCCc
Q 044597 150 EEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSNIELIDDPMP 229 (341)
Q Consensus 150 ~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l~~~~l~~~~~~ 229 (341)
+. ++.+++|+.|++++|... .+ ..+..+++|+.|++++| .+..++.+..+ ++|+.|+|++|.+....
T Consensus 103 ~~-l~~l~~L~~L~Ls~N~l~---~l-~~l~~l~~L~~L~Ls~N-----~l~~l~~l~~l-~~L~~L~Ls~N~l~~~~-- 169 (605)
T 1m9s_A 103 SS-LKDLKKLKSLSLEHNGIS---DI-NGLVHLPQLESLYLGNN-----KITDITVLSRL-TKLDTLSLEDNQISDIV-- 169 (605)
T ss_dssp TT-STTCTTCCEEECTTSCCC---CC-GGGGGCTTCSEEECCSS-----CCCCCGGGGSC-TTCSEEECCSSCCCCCG--
T ss_pred hh-hccCCCCCEEEecCCCCC---CC-ccccCCCccCEEECCCC-----ccCCchhhccc-CCCCEEECcCCcCCCch--
Confidence 56 889999999999988633 23 35788999999999988 77777766788 89999999999875433
Q ss_pred cCcCCCCCCeEEEEEeCcEeeecCCCCCcccEEEEecC
Q 044597 230 ALEKLPVLQVLKLKYLGRKLACSSDGFPKLKVLHLKSM 267 (341)
Q Consensus 230 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~ 267 (341)
.+..+++|+.|+|+.+..........+++|+.|+++++
T Consensus 170 ~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 170 PLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQ 207 (605)
T ss_dssp GGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSE
T ss_pred hhccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCC
Confidence 38888999999883333222234566788888888874
No 89
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.55 E-value=6.5e-15 Score=142.39 Aligned_cols=146 Identities=22% Similarity=0.250 Sum_probs=118.2
Q ss_pred ccccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCc
Q 044597 69 SPIMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCC 147 (341)
Q Consensus 69 ~~~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~ 147 (341)
.+.+..+.+|+.|+++ +.+..+|. + +.+++|++|+|++|.+..+| .+..+++|++|+|+++.+..
T Consensus 58 l~~l~~l~~L~~L~Ls~N~l~~~~~-l-~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~----------- 123 (605)
T 1m9s_A 58 VQGIQYLPNVTKLFLNGNKLTDIKP-L-TNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISD----------- 123 (605)
T ss_dssp CTTGGGCTTCCEEECTTSCCCCCGG-G-GGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCC-----------
T ss_pred ChHHccCCCCCEEEeeCCCCCCChh-h-ccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCC-----------
Confidence 3457778899999998 57888876 6 89999999999999888876 68899999999999855532
Q ss_pred chhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCcccccccCCccEEEEEeecCCCCC
Q 044597 148 STEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSNIELIDDP 227 (341)
Q Consensus 148 ~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l~~~~l~~~~ 227 (341)
++. +..+++|+.|++++|... .+ ..+..+++|+.|++++| .+..++.+..+ ++|+.|+|++|.++.
T Consensus 124 -l~~-l~~l~~L~~L~Ls~N~l~---~l-~~l~~l~~L~~L~Ls~N-----~l~~~~~l~~l-~~L~~L~Ls~N~i~~-- 189 (605)
T 1m9s_A 124 -ING-LVHLPQLESLYLGNNKIT---DI-TVLSRLTKLDTLSLEDN-----QISDIVPLAGL-TKLQNLYLSKNHISD-- 189 (605)
T ss_dssp -CGG-GGGCTTCSEEECCSSCCC---CC-GGGGSCTTCSEEECCSS-----CCCCCGGGTTC-TTCCEEECCSSCCCB--
T ss_pred -Ccc-ccCCCccCEEECCCCccC---Cc-hhhcccCCCCEEECcCC-----cCCCchhhccC-CCCCEEECcCCCCCC--
Confidence 556 888999999999988533 33 56788999999999988 77776546678 899999999998744
Q ss_pred CccCcCCCCCCeEEE
Q 044597 228 MPALEKLPVLQVLKL 242 (341)
Q Consensus 228 ~~~l~~l~~L~~L~l 242 (341)
++.+..+++|+.|++
T Consensus 190 l~~l~~l~~L~~L~L 204 (605)
T 1m9s_A 190 LRALAGLKNLDVLEL 204 (605)
T ss_dssp CGGGTTCTTCSEEEC
T ss_pred ChHHccCCCCCEEEc
Confidence 467888999999998
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.55 E-value=1e-14 Score=125.74 Aligned_cols=141 Identities=24% Similarity=0.306 Sum_probs=74.7
Q ss_pred eeeccC-CCCcccChhhhhcCCCccEEecCCccccccch-hhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCC
Q 044597 79 RENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTAD-EFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRL 156 (341)
Q Consensus 79 r~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~-~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l 156 (341)
+.+++. ..+..+|..+ . +++++|++++|.+..++. .+.++++|++|+++++.+. ...+.. +..+
T Consensus 17 ~~l~~~~~~l~~~p~~~-~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~----------~~~~~~-~~~l 82 (251)
T 3m19_A 17 KEVDCQGKSLDSVPSGI-P--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ----------TLSAGV-FDDL 82 (251)
T ss_dssp TEEECTTCCCSSCCSCC-C--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC----------CCCTTT-TTTC
T ss_pred eEEecCCCCccccCCCC-C--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC----------ccCHhH-hccC
Confidence 344554 3556666555 3 456666666666555543 4566666666666653322 110222 5556
Q ss_pred CCCceEEEEeecchhhhHHH-HHhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCCCCccCcC
Q 044597 157 PNLQNLRIWGDLSYYQSLLS-KSLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDDPMPALEK 233 (341)
Q Consensus 157 ~~L~~L~l~~~~~~~~~~l~-~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~~ 233 (341)
++|++|+++++. ...++ ..+..+++|+.|++++| .++.+| .+..+ ++|+.|++++|.++..+...++.
T Consensus 83 ~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~N-----~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~ 153 (251)
T 3m19_A 83 TELGTLGLANNQ---LASLPLGVFDHLTQLDKLYLGGN-----QLKSLPSGVFDRL-TKLKELRLNTNQLQSIPAGAFDK 153 (251)
T ss_dssp TTCCEEECTTSC---CCCCCTTTTTTCTTCCEEECCSS-----CCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTT
T ss_pred CcCCEEECCCCc---ccccChhHhcccCCCCEEEcCCC-----cCCCcChhHhccC-CcccEEECcCCcCCccCHHHcCc
Confidence 666666666553 12222 23455566666666665 555555 34555 56666666666654444444555
Q ss_pred CCCCCeEEE
Q 044597 234 LPVLQVLKL 242 (341)
Q Consensus 234 l~~L~~L~l 242 (341)
+++|++|++
T Consensus 154 l~~L~~L~L 162 (251)
T 3m19_A 154 LTNLQTLSL 162 (251)
T ss_dssp CTTCCEEEC
T ss_pred CcCCCEEEC
Confidence 555555555
No 91
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.54 E-value=5.4e-15 Score=122.75 Aligned_cols=150 Identities=19% Similarity=0.239 Sum_probs=85.8
Q ss_pred cccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCC
Q 044597 119 WKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPR 198 (341)
Q Consensus 119 ~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~ 198 (341)
..+++|++|+++++.+.. ++. +..+++|++|+++++.. ..+ ..+..+++|+.|++++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~------------l~~-l~~l~~L~~L~l~~n~~---~~~-~~l~~l~~L~~L~l~~n----- 98 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTD------------LTG-IEYAHNIKDLTINNIHA---TNY-NPISGLSNLERLRIMGK----- 98 (197)
T ss_dssp HHHHTCCEEEEESSCCSC------------CTT-GGGCTTCSEEEEESCCC---SCC-GGGTTCTTCCEEEEECT-----
T ss_pred hhcCCccEEeccCCCccC------------hHH-HhcCCCCCEEEccCCCC---Ccc-hhhhcCCCCCEEEeECC-----
Confidence 556666666666533321 233 55555666666655531 111 23445555555555554
Q ss_pred CCcc-Cc-ccccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeCcEeeecCCCCCcccEEEEecCCCCCceeec
Q 044597 199 RSNT-IL-AEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMG 276 (341)
Q Consensus 199 ~l~~-lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 276 (341)
.++. .| .+..+ ++|++|++++|.++...+..++ .+++|++|+++++..+..++ .
T Consensus 99 ~l~~~~~~~l~~l-~~L~~L~Ls~n~i~~~~~~~l~----------------------~l~~L~~L~L~~n~~i~~~~-~ 154 (197)
T 4ezg_A 99 DVTSDKIPNLSGL-TSLTLLDISHSAHDDSILTKIN----------------------TLPKVNSIDLSYNGAITDIM-P 154 (197)
T ss_dssp TCBGGGSCCCTTC-TTCCEEECCSSBCBGGGHHHHT----------------------TCSSCCEEECCSCTBCCCCG-G
T ss_pred ccCcccChhhcCC-CCCCEEEecCCccCcHhHHHHh----------------------hCCCCCEEEccCCCCccccH-h
Confidence 3333 23 44445 5555555555554322233333 45566666666544355554 4
Q ss_pred CCCCCcccEEEEecCCCCCccccccCCCCCCcEEEEecCC
Q 044597 277 IKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLELWWPE 316 (341)
Q Consensus 277 ~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 316 (341)
.+.+++|+.|++++|. +..++ .+..+++|++|++++++
T Consensus 155 l~~l~~L~~L~l~~n~-i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 155 LKTLPELKSLNIQFDG-VHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp GGGCSSCCEEECTTBC-CCCCT-TGGGCSSCCEEEECBC-
T ss_pred hcCCCCCCEEECCCCC-CcChH-HhccCCCCCEEEeeCcc
Confidence 5578889999999887 67776 67888999999999887
No 92
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.53 E-value=5.1e-16 Score=142.52 Aligned_cols=226 Identities=19% Similarity=0.209 Sum_probs=162.4
Q ss_pred ceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccc-----cchhhcccccCceeeecCcCCCCCCceEEeCCCcch
Q 044597 76 VRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDH-----TADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCST 149 (341)
Q Consensus 76 ~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~-----lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~ 149 (341)
..+++..+. ..+..++..+ .++++|++|+|++|.+.. ++..+..+++|++|++++..+.. +.+.. +
T Consensus 9 ~~L~~~~l~~~~~~~l~~~l-~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~------l~~~~-~ 80 (386)
T 2ca6_A 9 KSLKLDAITTEDEKSVFAVL-LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGR------VKDEI-P 80 (386)
T ss_dssp CCCEESSCCSHHHHTTSHHH-HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTS------CGGGS-H
T ss_pred cccccCCCCHHHHHHHHHHH-hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCc------cccch-h
Confidence 455666555 3677888888 999999999999997654 44457789999999998721110 00011 2
Q ss_pred hh------hhCCCCCCceEEEEeecch--hhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc--ccc----ccc-----
Q 044597 150 EE------ILGRLPNLQNLRIWGDLSY--YQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL--AEY----QFP----- 210 (341)
Q Consensus 150 ~~------~l~~l~~L~~L~l~~~~~~--~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~----~lp----- 210 (341)
.. ++..+++|++|++++|... ....++..+..+++|+.|++++| .++... .+. .+.
T Consensus 81 ~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-----~l~~~~~~~l~~~l~~l~~~~~~ 155 (386)
T 2ca6_A 81 EALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN-----GLGPQAGAKIARALQELAVNKKA 155 (386)
T ss_dssp HHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSS-----CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCC-----CCCHHHHHHHHHHHHHHhhhhhc
Confidence 22 2589999999999998622 23468888999999999999998 555322 221 110
Q ss_pred ---CCccEEEEEeecCCCCCCc----cCcCCCCCCeEEEEEeCcE------eee-cCCCCCcccEEEEecCCCC-----C
Q 044597 211 ---PSLTHLSFSNIELIDDPMP----ALEKLPVLQVLKLKYLGRK------LAC-SSDGFPKLKVLHLKSMLWL-----E 271 (341)
Q Consensus 211 ---~~L~~L~l~~~~l~~~~~~----~l~~l~~L~~L~l~~~~~~------~~~-~~~~~~~L~~L~l~~~~~l-----~ 271 (341)
++|++|++++|.++...++ .+..+++|++|+++.+... ... ....+++|++|+++++. + .
T Consensus 156 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~ 234 (386)
T 2ca6_A 156 KNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSS 234 (386)
T ss_dssp HTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHH
T ss_pred ccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHH
Confidence 5899999999998644444 4667899999999444322 112 44578999999999865 5 4
Q ss_pred ceeecCCCCCcccEEEEecCCCCCc-----ccccc--CCCCCCcEEEEecCC
Q 044597 272 EWTMGIKAMPKLECVIINPCAHLKR-----IPEQL--WCLKSLNKLELWWPE 316 (341)
Q Consensus 272 ~~~~~~~~l~~L~~L~l~~c~~l~~-----lp~~l--~~l~~L~~L~l~~~~ 316 (341)
.++.....+++|+.|++++|. ++. +|..+ +++++|++|++++|.
T Consensus 235 ~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 235 ALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp HHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred HHHHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 455556678999999999998 554 45666 448999999999987
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.53 E-value=1.8e-14 Score=124.31 Aligned_cols=123 Identities=17% Similarity=0.157 Sum_probs=87.1
Q ss_pred CCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEEEeecchhhhHHHHH
Q 044597 99 LNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLLSKS 178 (341)
Q Consensus 99 ~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~ 178 (341)
...++++++++.+..+|..+. ++++.|+++++.+.. .. +.. ++++++|++|+++++... ...+..
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~---------~~-~~~-~~~l~~L~~L~L~~n~l~--~~~~~~ 78 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLAT---------LS-DAT-FRGLTKLTWLNLDYNQLQ--TLSAGV 78 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCC---------CC-TTT-TTTCTTCCEEECTTSCCC--CCCTTT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCc---------cC-HhH-hcCcccCCEEECCCCcCC--ccCHhH
Confidence 346789999999999998765 689999999844431 11 334 788888888888887521 222334
Q ss_pred hcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEE
Q 044597 179 LCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKL 242 (341)
Q Consensus 179 l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l 242 (341)
+..+++|+.|+++++ .++.+| .+..+ ++|++|++++|.++..+...++.+++|++|++
T Consensus 79 ~~~l~~L~~L~L~~n-----~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 138 (251)
T 3m19_A 79 FDDLTELGTLGLANN-----QLASLPLGVFDHL-TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL 138 (251)
T ss_dssp TTTCTTCCEEECTTS-----CCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred hccCCcCCEEECCCC-----cccccChhHhccc-CCCCEEEcCCCcCCCcChhHhccCCcccEEEC
Confidence 677888888888877 677766 56677 78888888888776555445666666666666
No 94
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.51 E-value=2.9e-16 Score=143.00 Aligned_cols=228 Identities=14% Similarity=0.119 Sum_probs=153.3
Q ss_pred CCcceeeeeccC-CCCcccCh----hhhhcCC-CccEEecCCcccccc-chhhccc-----ccCceeeecCcCCCCCCce
Q 044597 73 DQEVRLRENSII-PSLKSLPS----SFLSSLL-NLYTLEMPFSYIDHT-ADEFWKM-----SKLRYLNFGAITLPAHPGK 140 (341)
Q Consensus 73 ~~l~~Lr~L~l~-~~~~~lp~----~if~~L~-~L~~L~Ls~~~~~~l-p~~i~~L-----~~L~~L~l~~~~lp~~i~~ 140 (341)
....+|++|+++ +.+...+. ..|.+++ +|++|+|++|.+... +..+..+ ++|++|+++++.+..
T Consensus 19 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~---- 94 (362)
T 3goz_A 19 SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSY---- 94 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG----
T ss_pred hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCCh----
Confidence 334558999998 57887774 4448898 899999999987765 5566665 899999999843321
Q ss_pred EEeCCCcchhh---hhCCC-CCCceEEEEeecch--hhhHHHHHhcCC-CCCCEEEEEeCCCCCCCCc-----cCc-ccc
Q 044597 141 YSLHPCCSTEE---ILGRL-PNLQNLRIWGDLSY--YQSLLSKSLCRL-SCLESLKLANESKMPRRSN-----TIL-AEY 207 (341)
Q Consensus 141 ~~~~~~~~~~~---~l~~l-~~L~~L~l~~~~~~--~~~~l~~~l~~l-~~L~~L~l~~~~e~~~~l~-----~lp-~~~ 207 (341)
.. +.. .+..+ ++|++|++++|... ....+...+..+ ++|+.|++++| .++ .++ .+.
T Consensus 95 -----~~-~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-----~l~~~~~~~l~~~l~ 163 (362)
T 3goz_A 95 -----KS-SDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN-----DLGIKSSDELIQILA 163 (362)
T ss_dssp -----SC-HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTS-----CGGGSCHHHHHHHHH
T ss_pred -----HH-HHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCC-----cCCHHHHHHHHHHHh
Confidence 11 221 24455 89999999988732 234454556664 69999999987 565 334 445
Q ss_pred cccCCccEEEEEeecCCCCCCcc----CcCC-CCCCeEEEEEeCcEe------eecCCC-CCcccEEEEecCCCCCceee
Q 044597 208 QFPPSLTHLSFSNIELIDDPMPA----LEKL-PVLQVLKLKYLGRKL------ACSSDG-FPKLKVLHLKSMLWLEEWTM 275 (341)
Q Consensus 208 ~lp~~L~~L~l~~~~l~~~~~~~----l~~l-~~L~~L~l~~~~~~~------~~~~~~-~~~L~~L~l~~~~~l~~~~~ 275 (341)
.+|++|++|++++|.++...... +... ++|++|+++.+.... ...... .++|++|+++++ .+.....
T Consensus 164 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~ 242 (362)
T 3goz_A 164 AIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSL 242 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCH
T ss_pred cCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHH
Confidence 56348999999999876555433 3345 599999993332111 111112 458999999984 4554432
Q ss_pred -----cCCCCCcccEEEEecCC-------CCCccccccCCCCCCcEEEEecCC
Q 044597 276 -----GIKAMPKLECVIINPCA-------HLKRIPEQLWCLKSLNKLELWWPE 316 (341)
Q Consensus 276 -----~~~~l~~L~~L~l~~c~-------~l~~lp~~l~~l~~L~~L~l~~~~ 316 (341)
....+++|+.|++++|. .+..++..+.++++|++|++++++
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 23568899999999997 122244456778889999998876
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.50 E-value=2.2e-14 Score=120.09 Aligned_cols=135 Identities=18% Similarity=0.256 Sum_probs=82.2
Q ss_pred CCCcccChhhhhcCCCccEEecCCccccccchh-hcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEE
Q 044597 85 PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADE-FWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLR 163 (341)
Q Consensus 85 ~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~-i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~ 163 (341)
..+..+|..+ .++|++|++++|.+..+|.. +..+++|++|+++++.+. .. ++..++.+++|++|+
T Consensus 17 ~~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~----------~~-~~~~~~~l~~L~~L~ 82 (208)
T 2o6s_A 17 QGRTSVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ----------SL-PNGVFNKLTSLTYLN 82 (208)
T ss_dssp SCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC----------CC-CTTTTTTCTTCCEEE
T ss_pred CCccCCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC----------cc-ChhhcCCCCCcCEEE
Confidence 3566666544 35677777777776666553 466777777777763332 11 222156666777777
Q ss_pred EEeecchhhhHHHH-HhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCCCCccCcCCCCCCeE
Q 044597 164 IWGDLSYYQSLLSK-SLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVL 240 (341)
Q Consensus 164 l~~~~~~~~~~l~~-~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L 240 (341)
++++. ...++. .+..+++|+.|+++++ .++.+| .+..+ ++|++|++++|.++..+...+..+++|++|
T Consensus 83 Ls~n~---l~~~~~~~~~~l~~L~~L~L~~N-----~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 153 (208)
T 2o6s_A 83 LSTNQ---LQSLPNGVFDKLTQLKELALNTN-----QLQSLPDGVFDKL-TQLKDLRLYQNQLKSVPDGVFDRLTSLQYI 153 (208)
T ss_dssp CCSSC---CCCCCTTTTTTCTTCCEEECCSS-----CCCCCCTTTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CCCCc---CCccCHhHhcCccCCCEEEcCCC-----cCcccCHhHhccC-CcCCEEECCCCccceeCHHHhccCCCccEE
Confidence 66663 222222 2566777777777766 666665 35667 777777777777655444446666666666
Q ss_pred EE
Q 044597 241 KL 242 (341)
Q Consensus 241 ~l 242 (341)
++
T Consensus 154 ~l 155 (208)
T 2o6s_A 154 WL 155 (208)
T ss_dssp EC
T ss_pred Ee
Confidence 66
No 96
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.49 E-value=1.9e-16 Score=152.22 Aligned_cols=201 Identities=18% Similarity=0.143 Sum_probs=126.8
Q ss_pred hcCCCccEEecCCccccccchhhcccccCceeeecCcC----CCCCCceEEeCCCcchhhhhCCCCCCceEE-EEeecch
Q 044597 96 SSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAIT----LPAHPGKYSLHPCCSTEEILGRLPNLQNLR-IWGDLSY 170 (341)
Q Consensus 96 ~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~----lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~-l~~~~~~ 170 (341)
..+++|+.|+|++|.+..+|.+++++++|+.|+++++. +|..+..+... .. +++.++.+++|+.|+ +..+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~-~~-~~~~l~~l~~L~~L~~l~~n~-- 421 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPL-LY-EKETLQYFSTLKAVDPMRAAY-- 421 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTG-GG-HHHHHHHHHHHHHHCGGGHHH--
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccc-cC-CHHHHHHHHhcccCcchhhcc--
Confidence 56777778888888777888888888888887775510 00000000001 12 233267777777776 33331
Q ss_pred hhhHHHH------HhcC--CCCCCEEEEEeCCCCCCCCccCcccccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEE
Q 044597 171 YQSLLSK------SLCR--LSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKL 242 (341)
Q Consensus 171 ~~~~l~~------~l~~--l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l 242 (341)
...++. .+.. ...|+.|++++| .++.+|.++.+ ++|+.|++++|.++ ..+..++.+++|+.|++
T Consensus 422 -~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n-----~l~~lp~~~~l-~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L 493 (567)
T 1dce_A 422 -LDDLRSKFLLENSVLKMEYADVRVLHLAHK-----DLTVLCHLEQL-LLVTHLDLSHNRLR-ALPPALAALRCLEVLQA 493 (567)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTTCSEEECTTS-----CCSSCCCGGGG-TTCCEEECCSSCCC-CCCGGGGGCTTCCEEEC
T ss_pred -cchhhhhhhhcccccccCccCceEEEecCC-----CCCCCcCcccc-ccCcEeecCccccc-ccchhhhcCCCCCEEEC
Confidence 111111 1111 135889999888 78888866788 89999999999986 44457888888888888
Q ss_pred EEeC-cEeeecCCCCCcccEEEEecCCCCCce--eecCCCCCcccEEEEecCCCCCccccccC----CCCCCcEEE
Q 044597 243 KYLG-RKLACSSDGFPKLKVLHLKSMLWLEEW--TMGIKAMPKLECVIINPCAHLKRIPEQLW----CLKSLNKLE 311 (341)
Q Consensus 243 ~~~~-~~~~~~~~~~~~L~~L~l~~~~~l~~~--~~~~~~l~~L~~L~l~~c~~l~~lp~~l~----~l~~L~~L~ 311 (341)
+.+. ..++ ..+.+++|++|++++ +.+..+ |...+.+++|+.|++++|+ +..+|+.+. .+++|+.|+
T Consensus 494 s~N~l~~lp-~l~~l~~L~~L~Ls~-N~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 494 SDNALENVD-GVANLPRLQELLLCN-NRLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CSSCCCCCG-GGTTCSSCCEEECCS-SCCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCCCc-ccCCCCCCcEEECCC-CCCCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccC
Confidence 3332 2222 556677888888877 346665 5566678888888888877 666655432 267777775
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.49 E-value=3.1e-14 Score=136.42 Aligned_cols=182 Identities=20% Similarity=0.175 Sum_probs=119.2
Q ss_pred eeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCC
Q 044597 77 RLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGR 155 (341)
Q Consensus 77 ~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~ 155 (341)
+++.|+++ +++..+|..+ . ++|++|++++|.+..+| ..+++|++|+++++.+.. ++. +..
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~------------ip~-l~~ 120 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-P--PQITVLEITQNALISLP---ELPASLEYLDACDNRLST------------LPE-LPA 120 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-C--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC------------CCC-CCT
T ss_pred CccEEEeCCCCCCccCHhH-c--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC------------cch-hhc
Confidence 78888887 5788899877 3 78999999999888888 568899999998844421 222 333
Q ss_pred CCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCcccccccCCccEEEEEeecCCCCCCccCcCCC
Q 044597 156 LPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSNIELIDDPMPALEKLP 235 (341)
Q Consensus 156 l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~ 235 (341)
+|++|++++|. +..+|. .+++|+.|++++| .++.+|. .+ ++|+.|++++|.++..+ .++ +
T Consensus 121 --~L~~L~Ls~N~---l~~lp~---~l~~L~~L~Ls~N-----~l~~lp~--~l-~~L~~L~Ls~N~L~~lp--~l~--~ 180 (571)
T 3cvr_A 121 --SLKHLDVDNNQ---LTMLPE---LPALLEYINADNN-----QLTMLPE--LP-TSLEVLSVRNNQLTFLP--ELP--E 180 (571)
T ss_dssp --TCCEEECCSSC---CSCCCC---CCTTCCEEECCSS-----CCSCCCC--CC-TTCCEEECCSSCCSCCC--CCC--T
T ss_pred --CCCEEECCCCc---CCCCCC---cCccccEEeCCCC-----ccCcCCC--cC-CCcCEEECCCCCCCCcc--hhh--C
Confidence 88888888875 333444 5788888888887 7777773 34 78888888888875422 244 7
Q ss_pred CCCeEEEEEeCcE-eeecCCCCCcc-------cEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCcccccc
Q 044597 236 VLQVLKLKYLGRK-LACSSDGFPKL-------KVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQL 301 (341)
Q Consensus 236 ~L~~L~l~~~~~~-~~~~~~~~~~L-------~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l 301 (341)
+|+.|+++.+... ++. . .++| +.|++++ +.++.+|...+.+++|+.|++++|+.-+.+|..+
T Consensus 181 ~L~~L~Ls~N~L~~lp~-~--~~~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 181 SLEALDVSTNLLESLPA-V--PVRNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp TCCEEECCSSCCSSCCC-C--C--------CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred CCCEEECcCCCCCchhh-H--HHhhhcccccceEEecCC-CcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence 7888877333211 111 1 1145 6666665 3455566555556666666666666333344433
No 98
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.48 E-value=1e-13 Score=120.40 Aligned_cols=146 Identities=18% Similarity=0.163 Sum_probs=118.7
Q ss_pred cccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcc
Q 044597 70 PIMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCS 148 (341)
Q Consensus 70 ~~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~ 148 (341)
+.+..+.+|++|+++ +.+..+| .+ +.+++|++|++++|.+..+|. +..+++|++|+++++.+..
T Consensus 35 ~~~~~l~~L~~L~l~~n~i~~l~-~l-~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~------------ 99 (263)
T 1xeu_A 35 VSQKELSGVQNFNGDNSNIQSLA-GM-QFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKN------------ 99 (263)
T ss_dssp ECHHHHTTCSEEECTTSCCCCCT-TG-GGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSC------------
T ss_pred cchhhcCcCcEEECcCCCcccch-HH-hhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCC------------
Confidence 356678889999998 5888888 57 999999999999999999987 9999999999999854432
Q ss_pred hhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCcccccccCCccEEEEEeecCCCCCC
Q 044597 149 TEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSNIELIDDPM 228 (341)
Q Consensus 149 ~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l~~~~l~~~~~ 228 (341)
++. +.. ++|++|++++|... .+ ..+..+++|+.|++++| .++.+|.+..+ ++|+.|++++|.++..
T Consensus 100 l~~-~~~-~~L~~L~L~~N~l~---~~-~~l~~l~~L~~L~Ls~N-----~i~~~~~l~~l-~~L~~L~L~~N~i~~~-- 165 (263)
T 1xeu_A 100 LNG-IPS-ACLSRLFLDNNELR---DT-DSLIHLKNLEILSIRNN-----KLKSIVMLGFL-SKLEVLDLHGNEITNT-- 165 (263)
T ss_dssp CTT-CCC-SSCCEEECCSSCCS---BS-GGGTTCTTCCEEECTTS-----CCCBCGGGGGC-TTCCEEECTTSCCCBC--
T ss_pred cCc-ccc-CcccEEEccCCccC---CC-hhhcCcccccEEECCCC-----cCCCChHHccC-CCCCEEECCCCcCcch--
Confidence 333 444 88999999998633 33 35889999999999998 78888867788 8999999999997544
Q ss_pred ccCcCCCCCCeEEEEE
Q 044597 229 PALEKLPVLQVLKLKY 244 (341)
Q Consensus 229 ~~l~~l~~L~~L~l~~ 244 (341)
..+..+++|+.|+++.
T Consensus 166 ~~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 166 GGLTRLKKVNWIDLTG 181 (263)
T ss_dssp TTSTTCCCCCEEEEEE
T ss_pred HHhccCCCCCEEeCCC
Confidence 6788899999999933
No 99
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.47 E-value=2e-14 Score=124.96 Aligned_cols=164 Identities=20% Similarity=0.162 Sum_probs=125.7
Q ss_pred cceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhh
Q 044597 75 EVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEIL 153 (341)
Q Consensus 75 l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l 153 (341)
+.++..++++ +.+..++ .+ ..+++|++|++++|.+..+| .+..+++|++|+++++.+.. ++. +
T Consensus 18 l~~l~~l~l~~~~i~~~~-~~-~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~------------~~~-l 81 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV-SQ-KELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISD------------LSP-L 81 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE-CH-HHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCC------------CGG-G
T ss_pred HHHHHHHHhcCCCccccc-ch-hhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCC------------Chh-h
Confidence 4556666676 5777777 56 89999999999999999998 79999999999999865542 455 8
Q ss_pred CCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCcccccccCCccEEEEEeecCCCCCCccCcC
Q 044597 154 GRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSNIELIDDPMPALEK 233 (341)
Q Consensus 154 ~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~ 233 (341)
+.+++|++|++++|.. ..++. +.. ++|+.|++++| .++.++.+..+ ++|+.|++++|.++. ++.++.
T Consensus 82 ~~l~~L~~L~L~~N~l---~~l~~-~~~-~~L~~L~L~~N-----~l~~~~~l~~l-~~L~~L~Ls~N~i~~--~~~l~~ 148 (263)
T 1xeu_A 82 KDLTKLEELSVNRNRL---KNLNG-IPS-ACLSRLFLDNN-----ELRDTDSLIHL-KNLEILSIRNNKLKS--IVMLGF 148 (263)
T ss_dssp TTCSSCCEEECCSSCC---SCCTT-CCC-SSCCEEECCSS-----CCSBSGGGTTC-TTCCEEECTTSCCCB--CGGGGG
T ss_pred ccCCCCCEEECCCCcc---CCcCc-ccc-CcccEEEccCC-----ccCCChhhcCc-ccccEEECCCCcCCC--ChHHcc
Confidence 8999999999999853 33332 333 89999999998 78887777788 899999999999744 357888
Q ss_pred CCCCCeEEEEEeCcEeeecCCCCCcccEEEEecC
Q 044597 234 LPVLQVLKLKYLGRKLACSSDGFPKLKVLHLKSM 267 (341)
Q Consensus 234 l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~ 267 (341)
+++|+.|+++.+..........+++|+.|++++.
T Consensus 149 l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 149 LSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp CTTCCEEECTTSCCCBCTTSTTCCCCCEEEEEEE
T ss_pred CCCCCEEECCCCcCcchHHhccCCCCCEEeCCCC
Confidence 9999999983332222244567788888888873
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.45 E-value=5.9e-14 Score=134.46 Aligned_cols=174 Identities=17% Similarity=0.141 Sum_probs=134.3
Q ss_pred CccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEEEeecchhhhHHHHHh
Q 044597 100 NLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLLSKSL 179 (341)
Q Consensus 100 ~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l 179 (341)
+|++|++++|.+..+|..+. ++|++|+++++.+. .+ + +.+++|++|++++|. +..+|. +
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~----------~i--p---~~l~~L~~L~Ls~N~---l~~ip~-l 118 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALI----------SL--P---ELPASLEYLDACDNR---LSTLPE-L 118 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCS----------CC--C---CCCTTCCEEECCSSC---CSCCCC-C
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCc----------cc--c---cccCCCCEEEccCCC---CCCcch-h
Confidence 89999999999999998774 88999999985443 22 2 357899999999985 334555 5
Q ss_pred cCCCCCCEEEEEeCCCCCCCCccCcccccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeC-cEeeecCCCCCc
Q 044597 180 CRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLG-RKLACSSDGFPK 258 (341)
Q Consensus 180 ~~l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~ 258 (341)
.. +|+.|++++| .++.+|. .+ ++|+.|++++|.++. ++. .+++|++|+++.+. ..++. .. ++
T Consensus 119 ~~--~L~~L~Ls~N-----~l~~lp~--~l-~~L~~L~Ls~N~l~~--lp~--~l~~L~~L~Ls~N~L~~lp~-l~--~~ 181 (571)
T 3cvr_A 119 PA--SLKHLDVDNN-----QLTMLPE--LP-ALLEYINADNNQLTM--LPE--LPTSLEVLSVRNNQLTFLPE-LP--ES 181 (571)
T ss_dssp CT--TCCEEECCSS-----CCSCCCC--CC-TTCCEEECCSSCCSC--CCC--CCTTCCEEECCSSCCSCCCC-CC--TT
T ss_pred hc--CCCEEECCCC-----cCCCCCC--cC-ccccEEeCCCCccCc--CCC--cCCCcCEEECCCCCCCCcch-hh--CC
Confidence 44 9999999998 7888885 46 899999999999855 333 67899999994333 22222 22 89
Q ss_pred ccEEEEecCCCCCceeecCCCCCcc-------cEEEEecCCCCCccccccCCCCCCcEEEEecCC
Q 044597 259 LKVLHLKSMLWLEEWTMGIKAMPKL-------ECVIINPCAHLKRIPEQLWCLKSLNKLELWWPE 316 (341)
Q Consensus 259 L~~L~l~~~~~l~~~~~~~~~l~~L-------~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 316 (341)
|+.|+++++ .++.+|. ... +| +.|++++|. ++.+|..+.++++|+.|++++|+
T Consensus 182 L~~L~Ls~N-~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 182 LEALDVSTN-LLESLPA-VPV--RNHHSEETEIFFRCRENR-ITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp CCEEECCSS-CCSSCCC-CC----------CCEEEECCSSC-CCCCCGGGGGSCTTEEEECCSSS
T ss_pred CCEEECcCC-CCCchhh-HHH--hhhcccccceEEecCCCc-ceecCHHHhcCCCCCEEEeeCCc
Confidence 999999984 5777775 332 67 999999998 88999989889999999999998
No 101
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.45 E-value=1.3e-15 Score=142.92 Aligned_cols=238 Identities=18% Similarity=0.139 Sum_probs=117.2
Q ss_pred ccCCcceeeeeccC-CCCcc-----cChhhhhcCCCccEEecCCccccc-----cchhhcccccCceeeecCcCC-----
Q 044597 71 IMDQEVRLRENSII-PSLKS-----LPSSFLSSLLNLYTLEMPFSYIDH-----TADEFWKMSKLRYLNFGAITL----- 134 (341)
Q Consensus 71 ~~~~l~~Lr~L~l~-~~~~~-----lp~~if~~L~~L~~L~Ls~~~~~~-----lp~~i~~L~~L~~L~l~~~~l----- 134 (341)
.+..+++|++|+++ +.+.. +...++...++|++|++++|.+.. ++..+..+++|++|+++++.+
T Consensus 108 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 187 (461)
T 1z7x_W 108 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV 187 (461)
T ss_dssp HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHH
Confidence 34455566666665 23321 111111224456666666654432 344455566666666665221
Q ss_pred ----------CCCCceEEeCCCc-c------hhhhhCCCCCCceEEEEeecchh--hhHHHHHh-cCCCCCCEEEEEeCC
Q 044597 135 ----------PAHPGKYSLHPCC-S------TEEILGRLPNLQNLRIWGDLSYY--QSLLSKSL-CRLSCLESLKLANES 194 (341)
Q Consensus 135 ----------p~~i~~~~~~~~~-~------~~~~l~~l~~L~~L~l~~~~~~~--~~~l~~~l-~~l~~L~~L~l~~~~ 194 (341)
...++.+.++++. . +...+..+++|++|+++++.... ...+...+ ..+++|+.|++++|
T Consensus 188 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n- 266 (461)
T 1z7x_W 188 RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC- 266 (461)
T ss_dssp HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-
T ss_pred HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC-
Confidence 1122334433311 0 11114455666666666554111 12222222 24566666666665
Q ss_pred CCCCCCcc-----Cc-ccccccCCccEEEEEeecCCCCCCccCc-----CCCCCCeEEEEEeCcE------eeecCCCCC
Q 044597 195 KMPRRSNT-----IL-AEYQFPPSLTHLSFSNIELIDDPMPALE-----KLPVLQVLKLKYLGRK------LACSSDGFP 257 (341)
Q Consensus 195 e~~~~l~~-----lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~-----~l~~L~~L~l~~~~~~------~~~~~~~~~ 257 (341)
.++. ++ .+..+ ++|++|++++|.+.......+. ..++|++|+++.+... +......++
T Consensus 267 ----~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 341 (461)
T 1z7x_W 267 ----GITAKGCGDLCRVLRAK-ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR 341 (461)
T ss_dssp ----CCCHHHHHHHHHHHHHC-TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCS
T ss_pred ----CCCHHHHHHHHHHHhhC-CCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCC
Confidence 4444 34 44445 6666666666654322222221 1246666666221110 011112356
Q ss_pred cccEEEEecCCCCCceee-cC-----CCCCcccEEEEecCCCCC-----ccccccCCCCCCcEEEEecCC
Q 044597 258 KLKVLHLKSMLWLEEWTM-GI-----KAMPKLECVIINPCAHLK-----RIPEQLWCLKSLNKLELWWPE 316 (341)
Q Consensus 258 ~L~~L~l~~~~~l~~~~~-~~-----~~l~~L~~L~l~~c~~l~-----~lp~~l~~l~~L~~L~l~~~~ 316 (341)
+|++|+++++ .+..... .. ...++|++|++++|. ++ .+|..+..+++|++|++++|+
T Consensus 342 ~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 342 FLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp SCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred CccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 7777777764 3333211 11 125688888888886 55 567777778888888888886
No 102
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.43 E-value=2.6e-13 Score=115.36 Aligned_cols=140 Identities=20% Similarity=0.221 Sum_probs=89.3
Q ss_pred eeccC-CCCcccChhhhhcCCCccEEecCCcccccc-chhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCC
Q 044597 80 ENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHT-ADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLP 157 (341)
Q Consensus 80 ~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~l-p~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~ 157 (341)
.++.+ ..+..+|..+ . ++|++|++++|.+..+ |..+..+++|++|+++++.+. .. +...++.++
T Consensus 23 ~v~c~~~~l~~ip~~~-~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~----------~i-~~~~~~~l~ 88 (229)
T 3e6j_A 23 TVDCRSKRHASVPAGI-P--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG----------AL-PVGVFDSLT 88 (229)
T ss_dssp EEECTTSCCSSCCSCC-C--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC----------CC-CTTTTTTCT
T ss_pred EeEccCCCcCccCCCC-C--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC----------Cc-ChhhcccCC
Confidence 34444 3566677655 2 6677777777766666 455677777777777764332 22 222256677
Q ss_pred CCceEEEEeecchhhhHHHH-HhcCCCCCCEEEEEeCCCCCCCCccCc-ccccccCCccEEEEEeecCCCCCCccCcCCC
Q 044597 158 NLQNLRIWGDLSYYQSLLSK-SLCRLSCLESLKLANESKMPRRSNTIL-AEYQFPPSLTHLSFSNIELIDDPMPALEKLP 235 (341)
Q Consensus 158 ~L~~L~l~~~~~~~~~~l~~-~l~~l~~L~~L~l~~~~e~~~~l~~lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~ 235 (341)
+|+.|++++|. +..++. .+..+++|+.|++++| .+..+| .+..+ ++|++|++++|.++..+...+..++
T Consensus 89 ~L~~L~Ls~N~---l~~l~~~~~~~l~~L~~L~Ls~N-----~l~~lp~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~ 159 (229)
T 3e6j_A 89 QLTVLDLGTNQ---LTVLPSAVFDRLVHLKELFMCCN-----KLTELPRGIERL-THLTHLALDQNQLKSIPHGAFDRLS 159 (229)
T ss_dssp TCCEEECCSSC---CCCCCTTTTTTCTTCCEEECCSS-----CCCSCCTTGGGC-TTCSEEECCSSCCCCCCTTTTTTCT
T ss_pred CcCEEECCCCc---CCccChhHhCcchhhCeEeccCC-----cccccCcccccC-CCCCEEECCCCcCCccCHHHHhCCC
Confidence 77777777664 223332 3566777777777777 677777 66777 7777777777777555555566777
Q ss_pred CCCeEEE
Q 044597 236 VLQVLKL 242 (341)
Q Consensus 236 ~L~~L~l 242 (341)
+|+.|++
T Consensus 160 ~L~~L~l 166 (229)
T 3e6j_A 160 SLTHAYL 166 (229)
T ss_dssp TCCEEEC
T ss_pred CCCEEEe
Confidence 7777766
No 103
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.43 E-value=2.7e-15 Score=140.70 Aligned_cols=228 Identities=14% Similarity=0.022 Sum_probs=132.4
Q ss_pred ccCCcceeeeeccC-CCCcc-cChhhhhcCC----CccEEecCCcccc-----ccchhhcccccCceeeecCcCCCCCCc
Q 044597 71 IMDQEVRLRENSII-PSLKS-LPSSFLSSLL----NLYTLEMPFSYID-----HTADEFWKMSKLRYLNFGAITLPAHPG 139 (341)
Q Consensus 71 ~~~~l~~Lr~L~l~-~~~~~-lp~~if~~L~----~L~~L~Ls~~~~~-----~lp~~i~~L~~L~~L~l~~~~lp~~i~ 139 (341)
.+..+++|++|+++ +.+.. -+..++..++ +|++|++++|.+. .+|..+..+++|++|+++++.+..
T Consensus 51 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~--- 127 (461)
T 1z7x_W 51 ALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD--- 127 (461)
T ss_dssp HHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH---
T ss_pred HHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCch---
Confidence 34455667777776 34443 2333434455 5777777777555 456667777777777777632210
Q ss_pred eEEeCCCcchhh---h-hCCCCCCceEEEEeecch--hhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc--ccc----
Q 044597 140 KYSLHPCCSTEE---I-LGRLPNLQNLRIWGDLSY--YQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL--AEY---- 207 (341)
Q Consensus 140 ~~~~~~~~~~~~---~-l~~l~~L~~L~l~~~~~~--~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~---- 207 (341)
.. +.. + ....++|++|++++|... ....++..+..+++|+.|++++| .++... .+.
T Consensus 128 ------~~-~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-----~i~~~~~~~l~~~l~ 195 (461)
T 1z7x_W 128 ------AG-LQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN-----DINEAGVRVLCQGLK 195 (461)
T ss_dssp ------HH-HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSS-----BCHHHHHHHHHHHHH
T ss_pred ------HH-HHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCC-----CcchHHHHHHHHHHh
Confidence 00 111 1 223557788887777522 23456666777788888888776 444322 221
Q ss_pred -cccCCccEEEEEeecCCCCC----CccCcCCCCCCeEEEEEeCcEe-------eecCCCCCcccEEEEecCCCCCc---
Q 044597 208 -QFPPSLTHLSFSNIELIDDP----MPALEKLPVLQVLKLKYLGRKL-------ACSSDGFPKLKVLHLKSMLWLEE--- 272 (341)
Q Consensus 208 -~lp~~L~~L~l~~~~l~~~~----~~~l~~l~~L~~L~l~~~~~~~-------~~~~~~~~~L~~L~l~~~~~l~~--- 272 (341)
.. ++|++|++++|.++... ...+..+++|++|+++.+.... ......+++|++|+++++ .+..
T Consensus 196 ~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~ 273 (461)
T 1z7x_W 196 DSP-CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGC 273 (461)
T ss_dssp HSC-CCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHH
T ss_pred cCC-CCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHH
Confidence 23 58888888888765432 2345567888888883322110 111224778888888875 4554
Q ss_pred --eeecCCCCCcccEEEEecCCCCCc-----cccccC-CCCCCcEEEEecCC
Q 044597 273 --WTMGIKAMPKLECVIINPCAHLKR-----IPEQLW-CLKSLNKLELWWPE 316 (341)
Q Consensus 273 --~~~~~~~l~~L~~L~l~~c~~l~~-----lp~~l~-~l~~L~~L~l~~~~ 316 (341)
++.....+++|++|++++|. ++. ++..+. ..++|++|++++|.
T Consensus 274 ~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 324 (461)
T 1z7x_W 274 GDLCRVLRAKESLKELSLAGNE-LGDEGARLLCETLLEPGCQLESLWVKSCS 324 (461)
T ss_dssp HHHHHHHHHCTTCCEEECTTCC-CHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHHhhCCCcceEECCCCC-CchHHHHHHHHHhccCCccceeeEcCCCC
Confidence 33333457888888888886 432 222222 23688888888886
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.41 E-value=2.5e-13 Score=114.73 Aligned_cols=140 Identities=19% Similarity=0.244 Sum_probs=92.0
Q ss_pred eeccC-CCCcccChhhhhcCCCccEEecCCccccccch-hhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCC
Q 044597 80 ENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTAD-EFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLP 157 (341)
Q Consensus 80 ~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~-~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~ 157 (341)
.++.. ..++.+|..+ . ++|++|++++|.+..+|. .+..+++|++|+++++.+. ...+.. +..++
T Consensus 15 ~v~c~~~~l~~iP~~l-~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~----------~~~~~~-~~~l~ 80 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNL-P--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS----------ELAPDA-FQGLR 80 (220)
T ss_dssp EEECTTSCCSSCCSSC-C--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCC----------EECTTT-TTTCS
T ss_pred EEEcCCCCcCcCCCcc-C--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCC----------CcCHHH-hhCCc
Confidence 34444 4667777766 3 577777888777777765 5677777777777774442 110233 67777
Q ss_pred CCceEEEEeecchhhhHHHHH-hcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCCCCccCcCC
Q 044597 158 NLQNLRIWGDLSYYQSLLSKS-LCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDDPMPALEKL 234 (341)
Q Consensus 158 ~L~~L~l~~~~~~~~~~l~~~-l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l 234 (341)
+|++|+++++. +..+|.. +..+++|+.|++++| .+..++ .+..+ ++|+.|++++|.++..+...+..+
T Consensus 81 ~L~~L~Ls~N~---l~~l~~~~f~~l~~L~~L~L~~N-----~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l 151 (220)
T 2v9t_B 81 SLNSLVLYGNK---ITELPKSLFEGLFSLQLLLLNAN-----KINCLRVDAFQDL-HNLNLLSLYDNKLQTIAKGTFSPL 151 (220)
T ss_dssp SCCEEECCSSC---CCCCCTTTTTTCTTCCEEECCSS-----CCCCCCTTTTTTC-TTCCEEECCSSCCSCCCTTTTTTC
T ss_pred CCCEEECCCCc---CCccCHhHccCCCCCCEEECCCC-----CCCEeCHHHcCCC-CCCCEEECCCCcCCEECHHHHhCC
Confidence 77777777764 3334433 466777777777777 666664 56677 777888887777765555567777
Q ss_pred CCCCeEEE
Q 044597 235 PVLQVLKL 242 (341)
Q Consensus 235 ~~L~~L~l 242 (341)
++|+.|++
T Consensus 152 ~~L~~L~L 159 (220)
T 2v9t_B 152 RAIQTMHL 159 (220)
T ss_dssp TTCCEEEC
T ss_pred CCCCEEEe
Confidence 77777776
No 105
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.41 E-value=1.6e-13 Score=114.70 Aligned_cols=176 Identities=16% Similarity=0.163 Sum_probs=133.9
Q ss_pred cEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEEEeecchhhhHHHH-Hhc
Q 044597 102 YTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLLSK-SLC 180 (341)
Q Consensus 102 ~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~-~l~ 180 (341)
+.++.+++.+..+|..+ .++|++|+++++.+. .. ++..++.+++|++|+++++. ...++. .+.
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~----------~~-~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~~ 73 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLK----------SL-PNGVFDELTSLTQLYLGGNK---LQSLPNGVFN 73 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCC----------CC-CTTTTTTCTTCSEEECCSSC---CCCCCTTTTT
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccC----------cC-ChhhhcccccCcEEECCCCc---cCccChhhcC
Confidence 56788888888888655 469999999985443 22 33227899999999999885 334443 468
Q ss_pred CCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeC-cEeee-cCCCC
Q 044597 181 RLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLG-RKLAC-SSDGF 256 (341)
Q Consensus 181 ~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~-~~~~~-~~~~~ 256 (341)
.+++|+.|++++| .++.+| .+..+ ++|++|++++|.++..+...++.+++|++|+++.+. ..... ....+
T Consensus 74 ~l~~L~~L~Ls~n-----~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l 147 (208)
T 2o6s_A 74 KLTSLTYLNLSTN-----QLQSLPNGVFDKL-TQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL 147 (208)
T ss_dssp TCTTCCEEECCSS-----CCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred CCCCcCEEECCCC-----cCCccCHhHhcCc-cCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccC
Confidence 8999999999998 788887 46789 999999999999876666668999999999993332 22222 24568
Q ss_pred CcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCccccccCCCCC
Q 044597 257 PKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKS 306 (341)
Q Consensus 257 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~ 306 (341)
++|++|++++.+ + .+.+++|+.|.+..+..-+.+|..++.++.
T Consensus 148 ~~L~~L~l~~N~-~------~~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 148 TSLQYIWLHDNP-W------DCTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TTCCEEECCSCC-B------CCCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred CCccEEEecCCC-e------ecCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 899999999853 1 245788999999988866778888776654
No 106
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.41 E-value=2.7e-14 Score=129.91 Aligned_cols=214 Identities=16% Similarity=0.130 Sum_probs=147.0
Q ss_pred CCCcccChhhhhcCCCccEEecCCccccccc-----hhhcccc-cCceeeecCcCCCCCCceEEeCCCcchhhhhCCC--
Q 044597 85 PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTA-----DEFWKMS-KLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRL-- 156 (341)
Q Consensus 85 ~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp-----~~i~~L~-~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l-- 156 (341)
+++....+.++...++|++|++++|.+...+ ..+..++ +|++|+++++.+.. .. +.. +..+
T Consensus 8 n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~---------~~-~~~-l~~~l~ 76 (362)
T 3goz_A 8 HPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGF---------KN-SDE-LVQILA 76 (362)
T ss_dssp CTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGG---------SC-HHH-HHHHHH
T ss_pred ccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCH---------HH-HHH-HHHHHh
Confidence 4666444444377777999999999888876 5677888 89999999843321 11 333 4333
Q ss_pred ---CCCceEEEEeecch--hhhHHHHHhcCC-CCCCEEEEEeCCCCCCCCccCc--cc----ccccCCccEEEEEeecCC
Q 044597 157 ---PNLQNLRIWGDLSY--YQSLLSKSLCRL-SCLESLKLANESKMPRRSNTIL--AE----YQFPPSLTHLSFSNIELI 224 (341)
Q Consensus 157 ---~~L~~L~l~~~~~~--~~~~l~~~l~~l-~~L~~L~l~~~~e~~~~l~~lp--~~----~~lp~~L~~L~l~~~~l~ 224 (341)
++|++|++++|... ....+...+..+ ++|+.|++++| .++..+ .+ ..+|.+|++|++++|.++
T Consensus 77 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-----~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 77 AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWN-----DFSSKSSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp TSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-----CGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred ccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCC-----cCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 99999999999732 234455557777 89999999998 777665 32 233469999999999986
Q ss_pred CCCCcc----CcCCC-CCCeEEEEEeCcE-ee-----ecCCCC-CcccEEEEecCCCCCc-----eeecCCC-CCcccEE
Q 044597 225 DDPMPA----LEKLP-VLQVLKLKYLGRK-LA-----CSSDGF-PKLKVLHLKSMLWLEE-----WTMGIKA-MPKLECV 286 (341)
Q Consensus 225 ~~~~~~----l~~l~-~L~~L~l~~~~~~-~~-----~~~~~~-~~L~~L~l~~~~~l~~-----~~~~~~~-l~~L~~L 286 (341)
...... +..++ +|++|+++.+... .. .....+ ++|++|+++++. +.. ++..... .++|++|
T Consensus 152 ~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L 230 (362)
T 3goz_A 152 IKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSL 230 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEE
T ss_pred HHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEE
Confidence 544433 34555 9999999333211 11 012234 599999999854 555 3322223 3599999
Q ss_pred EEecCCCCCccc-----cccCCCCCCcEEEEecCC
Q 044597 287 IINPCAHLKRIP-----EQLWCLKSLNKLELWWPE 316 (341)
Q Consensus 287 ~l~~c~~l~~lp-----~~l~~l~~L~~L~l~~~~ 316 (341)
++++|. ++..+ ..+..+++|+.|++++|.
T Consensus 231 ~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 231 NLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp ECCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred ECcCCC-CCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 999998 65543 234678999999999985
No 107
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.41 E-value=1.4e-13 Score=133.01 Aligned_cols=162 Identities=14% Similarity=0.121 Sum_probs=90.0
Q ss_pred CCcceeeeeccC-CCCc-----ccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecC--cC-----------
Q 044597 73 DQEVRLRENSII-PSLK-----SLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGA--IT----------- 133 (341)
Q Consensus 73 ~~l~~Lr~L~l~-~~~~-----~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~--~~----------- 133 (341)
..+++|+.|++. +.+. .++..+ .++++|++|++++|.+..+|..+..+++|++|+++. ..
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~-~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIA-RNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHH-HHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHH-hhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence 356778888886 3443 444444 788888888888887777887778888888887763 00
Q ss_pred -----------------CCC------CCceEEeCCCc----chhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCC
Q 044597 134 -----------------LPA------HPGKYSLHPCC----STEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLE 186 (341)
Q Consensus 134 -----------------lp~------~i~~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~ 186 (341)
+|. .++.+.++++. .+...++.+++|++|++.++- ....++.....+++|+
T Consensus 268 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~--~~~~l~~~~~~~~~L~ 345 (592)
T 3ogk_B 268 FPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVI--GDRGLEVLAQYCKQLK 345 (592)
T ss_dssp CCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGG--HHHHHHHHHHHCTTCC
T ss_pred ccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCcc--CHHHHHHHHHhCCCCC
Confidence 000 01334443311 011114666777777766332 2334444455667777
Q ss_pred EEEEEe----------CCCCCCCCcc--Cc-ccccccCCccEEEEEeecCCCCCCccCcC-CCCCCeEEE
Q 044597 187 SLKLAN----------ESKMPRRSNT--IL-AEYQFPPSLTHLSFSNIELIDDPMPALEK-LPVLQVLKL 242 (341)
Q Consensus 187 ~L~l~~----------~~e~~~~l~~--lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~-l~~L~~L~l 242 (341)
.|+++. |. .++. ++ ....+ ++|++|+++.+.++...+..++. +++|+.|++
T Consensus 346 ~L~L~~g~~~~~~~~~~~----~~~~~~~~~l~~~~-~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l 410 (592)
T 3ogk_B 346 RLRIERGADEQGMEDEEG----LVSQRGLIALAQGC-QELEYMAVYVSDITNESLESIGTYLKNLCDFRL 410 (592)
T ss_dssp EEEEECCCCSSTTSSTTC----CCCHHHHHHHHHHC-TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEE
T ss_pred EEEeecCccccccccccC----ccCHHHHHHHHhhC-ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEE
Confidence 777773 32 2221 11 12235 56666666555554433333433 556666666
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.38 E-value=4e-13 Score=114.18 Aligned_cols=132 Identities=20% Similarity=0.225 Sum_probs=110.7
Q ss_pred ceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchh-hcccccCceeeecCcCCCCCCceEEeCCCcchhhhh
Q 044597 76 VRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADE-FWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEIL 153 (341)
Q Consensus 76 ~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~-i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l 153 (341)
.+|++|+++ +.+..++...|+++++|++|+|++|.+..+|.. +..+++|++|+++++.+. .. ++..+
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~----------~l-~~~~~ 108 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT----------VL-PSAVF 108 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC----------CC-CTTTT
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCC----------cc-ChhHh
Confidence 789999998 588888655559999999999999999999865 689999999999995443 22 22327
Q ss_pred CCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCCC
Q 044597 154 GRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDDP 227 (341)
Q Consensus 154 ~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~ 227 (341)
+.+++|++|+++++. +..+|..+..+++|+.|++++| .+..+| .+..+ ++|+.|++++|.+.+..
T Consensus 109 ~~l~~L~~L~Ls~N~---l~~lp~~~~~l~~L~~L~L~~N-----~l~~~~~~~~~~l-~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 109 DRLVHLKELFMCCNK---LTELPRGIERLTHLTHLALDQN-----QLKSIPHGAFDRL-SSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp TTCTTCCEEECCSSC---CCSCCTTGGGCTTCSEEECCSS-----CCCCCCTTTTTTC-TTCCEEECTTSCBCTTB
T ss_pred CcchhhCeEeccCCc---ccccCcccccCCCCCEEECCCC-----cCCccCHHHHhCC-CCCCEEEeeCCCccCCc
Confidence 899999999999984 5577888899999999999998 888887 57889 99999999999976543
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.38 E-value=3.6e-13 Score=113.74 Aligned_cols=132 Identities=17% Similarity=0.200 Sum_probs=108.9
Q ss_pred ceeeeeccC-CCCcccChhhhhcCCCccEEecCCcccccc-chhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhh
Q 044597 76 VRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHT-ADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEIL 153 (341)
Q Consensus 76 ~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~l-p~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l 153 (341)
..++.|+++ +.+..+|...|+.+++|++|+|++|.+..+ |..+..+++|++|+++++.+. .. ++..+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~----------~l-~~~~f 100 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT----------EL-PKSLF 100 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC----------CC-CTTTT
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC----------cc-CHhHc
Confidence 578999998 689999886669999999999999998887 778999999999999995443 22 33327
Q ss_pred CCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCC
Q 044597 154 GRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDD 226 (341)
Q Consensus 154 ~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~ 226 (341)
..+++|++|++++|... ...+..+..+++|+.|++++| .++.++ .+..+ ++|+.|++++|.+.++
T Consensus 101 ~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~L~~N-----~l~~~~~~~~~~l-~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 101 EGLFSLQLLLLNANKIN--CLRVDAFQDLHNLNLLSLYDN-----KLQTIAKGTFSPL-RAIQTMHLAQNPFICD 167 (220)
T ss_dssp TTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSS-----CCSCCCTTTTTTC-TTCCEEECCSSCEECS
T ss_pred cCCCCCCEEECCCCCCC--EeCHHHcCCCCCCCEEECCCC-----cCCEECHHHHhCC-CCCCEEEeCCCCcCCC
Confidence 89999999999998622 222456889999999999999 888887 57889 9999999999987543
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.38 E-value=6.2e-13 Score=112.27 Aligned_cols=141 Identities=16% Similarity=0.180 Sum_probs=95.3
Q ss_pred eeeccC-CCCcccChhhhhcCCCccEEecCCccccccch--hhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCC
Q 044597 79 RENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTAD--EFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGR 155 (341)
Q Consensus 79 r~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~--~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~ 155 (341)
+.++++ +.++.+|..+ . ..+++|++++|.+..++. .+..+++|++|+++++.+. ...+.. ++.
T Consensus 14 ~~l~~s~n~l~~iP~~~-~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~----------~i~~~~-~~~ 79 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-P--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT----------DIEEGA-FEG 79 (220)
T ss_dssp TEEECCSSCCSSCCSCC-C--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC----------EECTTT-TTT
T ss_pred CEeEeCCCCcccCccCC-C--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC----------EECHHH-hCC
Confidence 356665 4677777766 3 345788888887777732 3677888888888774442 120223 777
Q ss_pred CCCCceEEEEeecchhhhHH-HHHhcCCCCCCEEEEEeCCCCCCCCccC-c-ccccccCCccEEEEEeecCCCCCCccCc
Q 044597 156 LPNLQNLRIWGDLSYYQSLL-SKSLCRLSCLESLKLANESKMPRRSNTI-L-AEYQFPPSLTHLSFSNIELIDDPMPALE 232 (341)
Q Consensus 156 l~~L~~L~l~~~~~~~~~~l-~~~l~~l~~L~~L~l~~~~e~~~~l~~l-p-~~~~lp~~L~~L~l~~~~l~~~~~~~l~ 232 (341)
+++|++|+++++. ...+ +..+..+++|+.|++++| .+..+ | .+..+ ++|+.|++++|.++......+.
T Consensus 80 l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~Ls~N-----~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~ 150 (220)
T 2v70_A 80 ASGVNEILLTSNR---LENVQHKMFKGLESLKTLMLRSN-----RITCVGNDSFIGL-SSVRLLSLYDNQITTVAPGAFD 150 (220)
T ss_dssp CTTCCEEECCSSC---CCCCCGGGGTTCSSCCEEECTTS-----CCCCBCTTSSTTC-TTCSEEECTTSCCCCBCTTTTT
T ss_pred CCCCCEEECCCCc---cCccCHhHhcCCcCCCEEECCCC-----cCCeECHhHcCCC-ccCCEEECCCCcCCEECHHHhc
Confidence 7788888877774 2222 234677788888888877 66666 3 66777 7888888888887665566677
Q ss_pred CCCCCCeEEE
Q 044597 233 KLPVLQVLKL 242 (341)
Q Consensus 233 ~l~~L~~L~l 242 (341)
.+++|+.|++
T Consensus 151 ~l~~L~~L~L 160 (220)
T 2v70_A 151 TLHSLSTLNL 160 (220)
T ss_dssp TCTTCCEEEC
T ss_pred CCCCCCEEEe
Confidence 7778887777
No 111
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.36 E-value=1e-12 Score=127.78 Aligned_cols=200 Identities=15% Similarity=0.110 Sum_probs=141.3
Q ss_pred hcCCCccEEecCCcccc---ccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEEEeecchhh
Q 044597 96 SSLLNLYTLEMPFSYID---HTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQ 172 (341)
Q Consensus 96 ~~L~~L~~L~Ls~~~~~---~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 172 (341)
..+++|++|+++.|.+. ..|..+..+.+|++|++...... .. ... +..+++|+.+++..+.....
T Consensus 368 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~----------~~-~~~-~~~l~~L~~l~l~~~~~~~~ 435 (635)
T 4g8a_A 368 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI----------TM-SSN-FLGLEQLEHLDFQHSNLKQM 435 (635)
T ss_dssp CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE----------EE-CSC-CTTCTTCCEEECTTSEEEST
T ss_pred ccccccccchhhccccccccccccchhhhhhhhhhhccccccc----------cc-ccc-ccccccccchhhhhcccccc
Confidence 46777888888887443 34566677778888877762111 12 333 67788899988876541111
Q ss_pred hHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCC-CCCCccCcCCCCCCeEEEEEeC-cE
Q 044597 173 SLLSKSLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELI-DDPMPALEKLPVLQVLKLKYLG-RK 248 (341)
Q Consensus 173 ~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~-~~~~~~l~~l~~L~~L~l~~~~-~~ 248 (341)
.-+..+..+++++.++++.+ .+...+ .+..+ ++++.|++++|... ......+..+++|++|+++.+. ..
T Consensus 436 -~~~~~~~~l~~l~~l~ls~n-----~l~~~~~~~~~~~-~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~ 508 (635)
T 4g8a_A 436 -SEFSVFLSLRNLIYLDISHT-----HTRVAFNGIFNGL-SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 508 (635)
T ss_dssp -TSSCTTTTCTTCCEEECTTS-----CCEECCTTTTTTC-TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred -cccccccccccccccccccc-----ccccccccccccc-hhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCC
Confidence 11134678899999999887 566554 56677 89999999998742 2344568899999999993333 22
Q ss_pred e-eecCCCCCcccEEEEecCCCCCceee-cCCCCCcccEEEEecCCCCCcc-ccccCCC-CCCcEEEEecCC
Q 044597 249 L-ACSSDGFPKLKVLHLKSMLWLEEWTM-GIKAMPKLECVIINPCAHLKRI-PEQLWCL-KSLNKLELWWPE 316 (341)
Q Consensus 249 ~-~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~c~~l~~l-p~~l~~l-~~L~~L~l~~~~ 316 (341)
. +.....+++|++|++++ +.+..++. ..+.+++|+.|++++|. +..+ |..+.++ ++|++|++++||
T Consensus 509 l~~~~f~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 509 LSPTAFNSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp ECTTTTTTCTTCCEEECTT-SCCCBCCCGGGTTCTTCCEEECTTSC-CCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred cChHHHcCCCCCCEEECCC-CcCCCCChhHHhCCCCCCEEECCCCc-CCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 2 23456789999999998 45777754 35678999999999999 5554 6667777 689999999866
No 112
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.35 E-value=2.1e-13 Score=131.87 Aligned_cols=223 Identities=15% Similarity=0.089 Sum_probs=125.8
Q ss_pred CcceeeeeccCC-CCcccChhhhhcCCCccEEecCCccccc--cchhhcccccCceeeecCcCCCCCCceEEeCCCcchh
Q 044597 74 QEVRLRENSIIP-SLKSLPSSFLSSLLNLYTLEMPFSYIDH--TADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTE 150 (341)
Q Consensus 74 ~l~~Lr~L~l~~-~~~~lp~~if~~L~~L~~L~Ls~~~~~~--lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~ 150 (341)
.+.+|+.|++.. ....+|..+ ..+++|++|++++|.+.. ++..+..+++|++|++++ .+ .... ++
T Consensus 268 ~~~~L~~L~l~~~~~~~l~~~~-~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~-~~---------~~~~-l~ 335 (592)
T 3ogk_B 268 FPRKLCRLGLSYMGPNEMPILF-PFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN-VI---------GDRG-LE 335 (592)
T ss_dssp CCTTCCEEEETTCCTTTGGGGG-GGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEG-GG---------HHHH-HH
T ss_pred ccccccccCccccchhHHHHHH-hhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccC-cc---------CHHH-HH
Confidence 344444444432 233445444 666666666666664322 223345666666666653 00 0011 23
Q ss_pred hhhCCCCCCceEEEEe----------ecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccC-c-cccc-ccCCccEEE
Q 044597 151 EILGRLPNLQNLRIWG----------DLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTI-L-AEYQ-FPPSLTHLS 217 (341)
Q Consensus 151 ~~l~~l~~L~~L~l~~----------~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~l-p-~~~~-lp~~L~~L~ 217 (341)
.....+++|++|++.+ +.......+......+++|+.|+++.+ .++.- + .+.. + ++|+.|+
T Consensus 336 ~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-----~l~~~~~~~l~~~~-~~L~~L~ 409 (592)
T 3ogk_B 336 VLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVS-----DITNESLESIGTYL-KNLCDFR 409 (592)
T ss_dssp HHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEES-----CCCHHHHHHHHHHC-CSCCEEE
T ss_pred HHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecC-----CccHHHHHHHHhhC-CCCcEEE
Confidence 3135678899999884 332233345455566888888888655 44432 2 4443 6 7888888
Q ss_pred EEee----cCCCCCCc-----cCcCCCCCCeEEEEEeCcE-----eeecCCCCCcccEEEEecCCCCCc--eeecCCCCC
Q 044597 218 FSNI----ELIDDPMP-----ALEKLPVLQVLKLKYLGRK-----LACSSDGFPKLKVLHLKSMLWLEE--WTMGIKAMP 281 (341)
Q Consensus 218 l~~~----~l~~~~~~-----~l~~l~~L~~L~l~~~~~~-----~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~l~ 281 (341)
++++ .++..+.. .+..+++|+.|+++++... .......+++|++|+++++. +.. ++.....++
T Consensus 410 l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~ 488 (592)
T 3ogk_B 410 LVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCP 488 (592)
T ss_dssp EEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCT
T ss_pred EeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCc
Confidence 8743 34332211 1455788888888331110 11111247788888888754 433 222234678
Q ss_pred cccEEEEecCCCCCc--cccccCCCCCCcEEEEecCC
Q 044597 282 KLECVIINPCAHLKR--IPEQLWCLKSLNKLELWWPE 316 (341)
Q Consensus 282 ~L~~L~l~~c~~l~~--lp~~l~~l~~L~~L~l~~~~ 316 (341)
+|+.|++++|+ ++. ++.....+++|++|++++|.
T Consensus 489 ~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 489 NLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp TCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred ccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 88888888888 543 34444567888888888887
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.33 E-value=3.4e-13 Score=122.61 Aligned_cols=148 Identities=21% Similarity=0.291 Sum_probs=113.7
Q ss_pred ceeeeeccC-CCCcccChhhhh-cCCCccEEecCCccccccch-hhcccccCceeeecCcCCCCCCceEEeCCCcchhhh
Q 044597 76 VRLRENSII-PSLKSLPSSFLS-SLLNLYTLEMPFSYIDHTAD-EFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEI 152 (341)
Q Consensus 76 ~~Lr~L~l~-~~~~~lp~~if~-~L~~L~~L~Ls~~~~~~lp~-~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~ 152 (341)
..++.|+++ +.+..+|...|. ++++|++|+|++|.+..+|. .+..+++|++|+++++.+. .. ++..
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~----------~~-~~~~ 107 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH----------TL-DEFL 107 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC----------EE-CTTT
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCC----------cC-CHHH
Confidence 347888888 688888888766 89999999999999888874 5899999999999985543 22 2222
Q ss_pred hCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc-c-c---ccccCCccEEEEEeecCCCCC
Q 044597 153 LGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL-A-E---YQFPPSLTHLSFSNIELIDDP 227 (341)
Q Consensus 153 l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp-~-~---~~lp~~L~~L~l~~~~l~~~~ 227 (341)
+..+++|++|++++|... ...+..+..+++|+.|++++| .+..+| . + ..+ ++|+.|++++|.++..+
T Consensus 108 ~~~l~~L~~L~L~~N~i~--~~~~~~~~~l~~L~~L~L~~N-----~l~~l~~~~~~~~~~l-~~L~~L~L~~N~l~~l~ 179 (361)
T 2xot_A 108 FSDLQALEVLLLYNNHIV--VVDRNAFEDMAQLQKLYLSQN-----QISRFPVELIKDGNKL-PKLMLLDLSSNKLKKLP 179 (361)
T ss_dssp TTTCTTCCEEECCSSCCC--EECTTTTTTCTTCCEEECCSS-----CCCSCCGGGTC----C-TTCCEEECCSSCCCCCC
T ss_pred hCCCcCCCEEECCCCccc--EECHHHhCCcccCCEEECCCC-----cCCeeCHHHhcCcccC-CcCCEEECCCCCCCccC
Confidence 888999999999988622 222456888999999999998 888888 4 3 468 89999999999987666
Q ss_pred CccCcCCCC--CCeEEE
Q 044597 228 MPALEKLPV--LQVLKL 242 (341)
Q Consensus 228 ~~~l~~l~~--L~~L~l 242 (341)
...+..++. |+.|++
T Consensus 180 ~~~~~~l~~~~l~~l~l 196 (361)
T 2xot_A 180 LTDLQKLPAWVKNGLYL 196 (361)
T ss_dssp HHHHHHSCHHHHTTEEC
T ss_pred HHHhhhccHhhcceEEe
Confidence 556777776 377777
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.32 E-value=1e-12 Score=110.90 Aligned_cols=131 Identities=16% Similarity=0.144 Sum_probs=106.4
Q ss_pred eeeeeccC-CCCccc-ChhhhhcCCCccEEecCCccccccch-hhcccccCceeeecCcCCCCCCceEEeCCCcchhhhh
Q 044597 77 RLRENSII-PSLKSL-PSSFLSSLLNLYTLEMPFSYIDHTAD-EFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEIL 153 (341)
Q Consensus 77 ~Lr~L~l~-~~~~~l-p~~if~~L~~L~~L~Ls~~~~~~lp~-~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l 153 (341)
.+++|+++ +.+..+ |..+|+++++|++|++++|.+..+|. .+..+++|++|+++++.+. ...+.. +
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~----------~~~~~~-~ 101 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE----------NVQHKM-F 101 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC----------CCCGGG-G
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccC----------ccCHhH-h
Confidence 45788888 688888 44555999999999999999998876 7999999999999995443 220334 8
Q ss_pred CCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccC-c-ccccccCCccEEEEEeecCCCC
Q 044597 154 GRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTI-L-AEYQFPPSLTHLSFSNIELIDD 226 (341)
Q Consensus 154 ~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~l-p-~~~~lp~~L~~L~l~~~~l~~~ 226 (341)
+.+++|++|++++|.. ....+..+..+++|+.|++++| .++.+ | .+..+ ++|+.|++++|.+.+.
T Consensus 102 ~~l~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~L~~N-----~l~~~~~~~~~~l-~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 102 KGLESLKTLMLRSNRI--TCVGNDSFIGLSSVRLLSLYDN-----QITTVAPGAFDTL-HSLSTLNLLANPFNCN 168 (220)
T ss_dssp TTCSSCCEEECTTSCC--CCBCTTSSTTCTTCSEEECTTS-----CCCCBCTTTTTTC-TTCCEEECCSCCEECS
T ss_pred cCCcCCCEEECCCCcC--CeECHhHcCCCccCCEEECCCC-----cCCEECHHHhcCC-CCCCEEEecCcCCcCC
Confidence 9999999999999862 2223567889999999999998 78887 5 78889 9999999999997544
No 115
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.30 E-value=1.5e-12 Score=105.00 Aligned_cols=126 Identities=18% Similarity=0.195 Sum_probs=77.6
Q ss_pred hcCCCccEEecCCcccc--ccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEEEeecchhhh
Q 044597 96 SSLLNLYTLEMPFSYID--HTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQS 173 (341)
Q Consensus 96 ~~L~~L~~L~Ls~~~~~--~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 173 (341)
...++|++|++++|.+. .+|..+..+++|++|+++++.+.. +.. ++.+++|++|++++|....
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~------------~~~-~~~l~~L~~L~Ls~N~l~~-- 85 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS------------VSN-LPKLPKLKKLELSENRIFG-- 85 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC------------CSS-CCCCSSCCEEEEESCCCCS--
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC------------hhh-hccCCCCCEEECcCCcCch--
Confidence 34466777777777666 677666777777777777644321 223 6667777777777664211
Q ss_pred HHHHHhcCCCCCCEEEEEeCCCCCCCCccCc---ccccccCCccEEEEEeecCCCCCC---ccCcCCCCCCeEEE
Q 044597 174 LLSKSLCRLSCLESLKLANESKMPRRSNTIL---AEYQFPPSLTHLSFSNIELIDDPM---PALEKLPVLQVLKL 242 (341)
Q Consensus 174 ~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp---~~~~lp~~L~~L~l~~~~l~~~~~---~~l~~l~~L~~L~l 242 (341)
.+|..+..+++|+.|++++| .++.+| .+..+ ++|+.|++++|.++..+. ..+..+++|++|++
T Consensus 86 ~~~~~~~~l~~L~~L~Ls~N-----~l~~~~~~~~l~~l-~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 154 (168)
T 2ell_A 86 GLDMLAEKLPNLTHLNLSGN-----KLKDISTLEPLKKL-ECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDG 154 (168)
T ss_dssp CCCHHHHHCTTCCEEECBSS-----SCCSSGGGGGGSSC-SCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETT
T ss_pred HHHHHHhhCCCCCEEeccCC-----ccCcchhHHHHhcC-CCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecC
Confidence 14445555677777777776 566653 44566 677777777777644333 24556666666655
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.27 E-value=1.6e-12 Score=118.17 Aligned_cols=165 Identities=23% Similarity=0.233 Sum_probs=121.5
Q ss_pred eeeccC-CCCcccChhhhhcCCCccEEecCCccccccchh-hc-ccccCceeeecCcCCCCCCceEEeCCCcchhhhhCC
Q 044597 79 RENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADE-FW-KMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGR 155 (341)
Q Consensus 79 r~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~-i~-~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~ 155 (341)
+.+++. ..+..+|..+ . ..+++|+|++|.+..+|.. +. .+++|++|+++++.+. ...+.. ++.
T Consensus 21 ~~l~c~~~~l~~iP~~~-~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~----------~i~~~~-~~~ 86 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-P--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN----------FISSEA-FVP 86 (361)
T ss_dssp TEEECCSSCCSSCCSSC-C--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC----------EECTTT-TTT
T ss_pred CEEEeCCCCcCccCccC-C--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC----------ccChhh-ccC
Confidence 456666 5788999877 3 4589999999999999765 45 8999999999985553 220234 899
Q ss_pred CCCCceEEEEeecchhhhHHH-HHhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCCCCccC-
Q 044597 156 LPNLQNLRIWGDLSYYQSLLS-KSLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDDPMPAL- 231 (341)
Q Consensus 156 l~~L~~L~l~~~~~~~~~~l~-~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l- 231 (341)
+++|+.|++++|. +..++ ..+..+++|+.|++++| .+..++ .+..+ ++|+.|++++|.++..+...+
T Consensus 87 l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~L~~N-----~i~~~~~~~~~~l-~~L~~L~L~~N~l~~l~~~~~~ 157 (361)
T 2xot_A 87 VPNLRYLDLSSNH---LHTLDEFLFSDLQALEVLLLYNN-----HIVVVDRNAFEDM-AQLQKLYLSQNQISRFPVELIK 157 (361)
T ss_dssp CTTCCEEECCSSC---CCEECTTTTTTCTTCCEEECCSS-----CCCEECTTTTTTC-TTCCEEECCSSCCCSCCGGGTC
T ss_pred CCCCCEEECCCCc---CCcCCHHHhCCCcCCCEEECCCC-----cccEECHHHhCCc-ccCCEEECCCCcCCeeCHHHhc
Confidence 9999999999985 33333 35789999999999998 788774 78889 999999999999876655555
Q ss_pred --cCCCCCCeEEEEEeCcE-ee-ecCCCCCc--ccEEEEec
Q 044597 232 --EKLPVLQVLKLKYLGRK-LA-CSSDGFPK--LKVLHLKS 266 (341)
Q Consensus 232 --~~l~~L~~L~l~~~~~~-~~-~~~~~~~~--L~~L~l~~ 266 (341)
..+++|+.|+++.+... ++ .....++. ++.|++.+
T Consensus 158 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 158 DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198 (361)
T ss_dssp ----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCS
T ss_pred CcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecC
Confidence 67899999999433321 11 11223444 47788876
No 117
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.27 E-value=6.8e-13 Score=104.79 Aligned_cols=81 Identities=20% Similarity=0.225 Sum_probs=38.3
Q ss_pred hCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc---ccccccCCccEEEEEeecCCCCCC-
Q 044597 153 LGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL---AEYQFPPSLTHLSFSNIELIDDPM- 228 (341)
Q Consensus 153 l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp---~~~~lp~~L~~L~l~~~~l~~~~~- 228 (341)
++.+++|++|++++|.. ...+|..+..+++|+.|++++| .++.+| .+..+ ++|++|++++|.++..+.
T Consensus 60 ~~~l~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~ls~N-----~i~~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~ 131 (149)
T 2je0_A 60 LPKLNKLKKLELSDNRV--SGGLEVLAEKCPNLTHLNLSGN-----KIKDLSTIEPLKKL-ENLKSLDLFNCEVTNLNDY 131 (149)
T ss_dssp CCCCTTCCEEECCSSCC--CSCTHHHHHHCTTCCEEECTTS-----CCCSHHHHGGGGGC-TTCCEEECTTCGGGGSTTH
T ss_pred hhcCCCCCEEECCCCcc--cchHHHHhhhCCCCCEEECCCC-----cCCChHHHHHHhhC-CCCCEEeCcCCcccchHHH
Confidence 44444444444444431 1113444444555555555555 444432 34455 556666666665533332
Q ss_pred --ccCcCCCCCCeEE
Q 044597 229 --PALEKLPVLQVLK 241 (341)
Q Consensus 229 --~~l~~l~~L~~L~ 241 (341)
..++.+++|+.|+
T Consensus 132 ~~~~~~~l~~L~~L~ 146 (149)
T 2je0_A 132 RENVFKLLPQLTYLD 146 (149)
T ss_dssp HHHHHHHCTTCCEET
T ss_pred HHHHHHHCCCccccc
Confidence 2345555555553
No 118
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.25 E-value=7e-12 Score=103.56 Aligned_cols=122 Identities=16% Similarity=0.191 Sum_probs=80.5
Q ss_pred eeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCC
Q 044597 79 RENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLP 157 (341)
Q Consensus 79 r~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~ 157 (341)
++++++ +.+..+|..+ . ++|++|++++|.+..+|..+..+++|++|+++++.+. ...+.. +..++
T Consensus 13 ~~l~~~~~~l~~ip~~~-~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~----------~i~~~~-f~~l~ 78 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-P--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIS----------TLSNQS-FSNMT 78 (193)
T ss_dssp TEEECTTSCCSSCCSCC-C--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCC----------CCCTTT-TTTCT
T ss_pred CEEEcCCCCCCcCCCCC-C--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCC----------EeCHhH-ccCCC
Confidence 456665 4788888877 3 5788999999988888888889999999999884443 120223 66777
Q ss_pred CCceEEEEeecchhhhHHH-HHhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecC
Q 044597 158 NLQNLRIWGDLSYYQSLLS-KSLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIEL 223 (341)
Q Consensus 158 ~L~~L~l~~~~~~~~~~l~-~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l 223 (341)
+|++|++++|. ...++ ..+..+++|+.|++++| .++.+| .+..+ ++|+.|++++|.+
T Consensus 79 ~L~~L~Ls~N~---l~~i~~~~f~~l~~L~~L~L~~N-----~l~~~~~~~~~~l-~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 79 QLLTLILSYNR---LRCIPPRTFDGLKSLRLLSLHGN-----DISVVPEGAFNDL-SALSHLAIGANPL 138 (193)
T ss_dssp TCCEEECCSSC---CCBCCTTTTTTCTTCCEEECCSS-----CCCBCCTTTTTTC-TTCCEEECCSSCE
T ss_pred CCCEEECCCCc---cCEeCHHHhCCCCCCCEEECCCC-----CCCeeChhhhhcC-ccccEEEeCCCCe
Confidence 77777777664 22222 24556666666666666 555555 34555 6666666666654
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.21 E-value=1.4e-11 Score=99.14 Aligned_cols=128 Identities=26% Similarity=0.292 Sum_probs=102.1
Q ss_pred hcCCCCCCEEEEEeCCCCCCCCc--cCc-ccccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeCcE--eeecC
Q 044597 179 LCRLSCLESLKLANESKMPRRSN--TIL-AEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLGRK--LACSS 253 (341)
Q Consensus 179 l~~l~~L~~L~l~~~~e~~~~l~--~lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~ 253 (341)
....++|+.|++++| .+. .+| .+..+ ++|+.|++++|.++.. ..++.+++|++|+++.+... .+...
T Consensus 20 ~~~~~~L~~L~l~~n-----~l~~~~i~~~~~~l-~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 91 (168)
T 2ell_A 20 NRTPAAVRELVLDNC-----KSNDGKIEGLTAEF-VNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLA 91 (168)
T ss_dssp TSCTTSCSEEECCSC-----BCBTTBCSSCCGGG-GGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHH
T ss_pred cCCcccCCEEECCCC-----CCChhhHHHHHHhC-CCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHH
Confidence 345688999999998 777 788 77889 9999999999997544 77889999999999444322 22223
Q ss_pred CCCCcccEEEEecCCCCCcee--ecCCCCCcccEEEEecCCCCCcccc----ccCCCCCCcEEEEecCC
Q 044597 254 DGFPKLKVLHLKSMLWLEEWT--MGIKAMPKLECVIINPCAHLKRIPE----QLWCLKSLNKLELWWPE 316 (341)
Q Consensus 254 ~~~~~L~~L~l~~~~~l~~~~--~~~~~l~~L~~L~l~~c~~l~~lp~----~l~~l~~L~~L~l~~~~ 316 (341)
..+++|++|+++++ .+..++ ...+.+++|+.|++++|+ +..+|. .+..+++|++|++.+|.
T Consensus 92 ~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 92 EKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp HHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred hhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC
Confidence 35899999999985 577765 456789999999999998 777776 67889999999999997
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.20 E-value=6.1e-12 Score=99.23 Aligned_cols=123 Identities=20% Similarity=0.149 Sum_probs=93.9
Q ss_pred cceeeeeccC-CCCc--ccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhh
Q 044597 75 EVRLRENSII-PSLK--SLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEE 151 (341)
Q Consensus 75 l~~Lr~L~l~-~~~~--~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~ 151 (341)
..+++.|+++ +.+. .+|..+ +.+++|++|++++|.+..+ ..++.+++|++|+++++.+.. .. +..
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~-~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~---------~~-~~~ 83 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLT-DEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSG---------GL-EVL 83 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCC-TTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCS---------CT-HHH
T ss_pred CccCeEEEccCCcCChhHHHHHH-hhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccc---------hH-HHH
Confidence 4678888887 4676 788877 8999999999999988877 678889999999998855431 23 444
Q ss_pred hhCCCCCCceEEEEeecchhhhHH--HHHhcCCCCCCEEEEEeCCCCCCCCccCcc-----cccccCCccEEEEE
Q 044597 152 ILGRLPNLQNLRIWGDLSYYQSLL--SKSLCRLSCLESLKLANESKMPRRSNTILA-----EYQFPPSLTHLSFS 219 (341)
Q Consensus 152 ~l~~l~~L~~L~l~~~~~~~~~~l--~~~l~~l~~L~~L~l~~~~e~~~~l~~lp~-----~~~lp~~L~~L~l~ 219 (341)
++.+++|++|++++|. ...+ +..++.+++|+.|++++| .+..+|. +..+ ++|+.|+++
T Consensus 84 -~~~l~~L~~L~ls~N~---i~~~~~~~~~~~l~~L~~L~l~~N-----~l~~~~~~~~~~~~~l-~~L~~L~l~ 148 (149)
T 2je0_A 84 -AEKCPNLTHLNLSGNK---IKDLSTIEPLKKLENLKSLDLFNC-----EVTNLNDYRENVFKLL-PQLTYLDGY 148 (149)
T ss_dssp -HHHCTTCCEEECTTSC---CCSHHHHGGGGGCTTCCEEECTTC-----GGGGSTTHHHHHHHHC-TTCCEETTB
T ss_pred -hhhCCCCCEEECCCCc---CCChHHHHHHhhCCCCCEEeCcCC-----cccchHHHHHHHHHHC-CCcccccCC
Confidence 7778999999999885 3333 367888999999999888 6777652 4567 788887764
No 121
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.19 E-value=2.5e-13 Score=112.76 Aligned_cols=132 Identities=20% Similarity=0.225 Sum_probs=93.3
Q ss_pred CCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEEE
Q 044597 86 SLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIW 165 (341)
Q Consensus 86 ~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l~ 165 (341)
.++.+|..+ +++++|++|++++|.+..+| .+..+++|++|+++++.+. .. +.. +..+++|++|+++
T Consensus 36 ~l~~l~~~~-~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~----------~l-~~~-~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 36 PIEKMDATL-STLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK----------KI-ENL-DAVADTLEELWIS 101 (198)
T ss_dssp TCCCCHHHH-HHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEEC----------SC-SSH-HHHHHHCSEEEEE
T ss_pred cHhhhhHHH-hcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcc----------cc-cch-hhcCCcCCEEECc
Confidence 567777777 99999999999999888888 8888999999999872221 22 223 5566788888888
Q ss_pred eecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc---ccccccCCccEEEEEeecCCCCCCc----------cCc
Q 044597 166 GDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL---AEYQFPPSLTHLSFSNIELIDDPMP----------ALE 232 (341)
Q Consensus 166 ~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp---~~~~lp~~L~~L~l~~~~l~~~~~~----------~l~ 232 (341)
+|. ...+| .+..+++|+.|++++| .+..++ .+..+ ++|++|++++|.+...... .+.
T Consensus 102 ~N~---l~~l~-~~~~l~~L~~L~l~~N-----~i~~~~~~~~l~~l-~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~ 171 (198)
T 1ds9_A 102 YNQ---IASLS-GIEKLVNLRVLYMSNN-----KITNWGEIDKLAAL-DKLEDLLLAGNPLYNDYKENNATSEYRIEVVK 171 (198)
T ss_dssp EEE---CCCHH-HHHHHHHSSEEEESEE-----ECCCHHHHHHHTTT-TTCSEEEECSCHHHHHHHTTTTHHHHHHHHHH
T ss_pred CCc---CCcCC-ccccCCCCCEEECCCC-----cCCchhHHHHHhcC-CCCCEEEecCCccccccccccchHHHHHHHHH
Confidence 885 33344 5677788888888887 666654 45677 7888888888876333211 145
Q ss_pred CCCCCCeEE
Q 044597 233 KLPVLQVLK 241 (341)
Q Consensus 233 ~l~~L~~L~ 241 (341)
.+++|+.|+
T Consensus 172 ~l~~L~~Ld 180 (198)
T 1ds9_A 172 RLPNLKKLD 180 (198)
T ss_dssp HCSSCSEEC
T ss_pred hCCCcEEEC
Confidence 566666664
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.19 E-value=1.3e-11 Score=101.72 Aligned_cols=124 Identities=16% Similarity=0.180 Sum_probs=80.6
Q ss_pred eeeccC-CCCcccChhhhhcCCCccEEecCCccccccchh--hcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCC
Q 044597 79 RENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADE--FWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGR 155 (341)
Q Consensus 79 r~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~--i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~ 155 (341)
++++++ +.++++|..+ .. +|++|++++|.+..+|.. +..+++|++|+++++.+.. .. +.. ++.
T Consensus 11 ~~l~~s~~~l~~ip~~~-~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~---------~~-~~~-~~~ 76 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI-PL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG---------IE-PNA-FEG 76 (192)
T ss_dssp TEEECTTSCCSSCCSCC-CT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCC---------BC-TTT-TTT
T ss_pred CEEEcCCCCcCcCccCC-CC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCC---------cC-HhH-cCC
Confidence 567776 4788888877 33 788888988888888754 7888888888888744431 11 333 777
Q ss_pred CCCCceEEEEeecchhhhHHH-HHhcCCCCCCEEEEEeCCCCCCCCccC-c-ccccccCCccEEEEEeecCCC
Q 044597 156 LPNLQNLRIWGDLSYYQSLLS-KSLCRLSCLESLKLANESKMPRRSNTI-L-AEYQFPPSLTHLSFSNIELID 225 (341)
Q Consensus 156 l~~L~~L~l~~~~~~~~~~l~-~~l~~l~~L~~L~l~~~~e~~~~l~~l-p-~~~~lp~~L~~L~l~~~~l~~ 225 (341)
+++|++|+++++. ...++ ..+..+++|+.|++++| .+..+ | .+..+ ++|++|++++|.+.+
T Consensus 77 l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~L~~N-----~l~~~~~~~~~~l-~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 77 ASHIQELQLGENK---IKEISNKMFLGLHQLKTLNLYDN-----QISCVMPGSFEHL-NSLTSLNLASNPFNC 140 (192)
T ss_dssp CTTCCEEECCSCC---CCEECSSSSTTCTTCCEEECCSS-----CCCEECTTSSTTC-TTCCEEECTTCCBCC
T ss_pred cccCCEEECCCCc---CCccCHHHhcCCCCCCEEECCCC-----cCCeeCHHHhhcC-CCCCEEEeCCCCccC
Confidence 7777777777764 22222 23556666666666666 55544 3 55566 666666666666543
No 123
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.17 E-value=6.9e-12 Score=101.93 Aligned_cols=128 Identities=19% Similarity=0.232 Sum_probs=71.7
Q ss_pred cCCcceeeeeccC-CCCcccChhhhhcCC-CccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcch
Q 044597 72 MDQEVRLRENSII-PSLKSLPSSFLSSLL-NLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCST 149 (341)
Q Consensus 72 ~~~l~~Lr~L~l~-~~~~~lp~~if~~L~-~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~ 149 (341)
+..+.+|+.|+++ +.+..+|. + ..+. +|++|++++|.+..+ ..+..+++|++|+++++.+. .. +
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~-~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~----------~~-~ 80 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-L-GATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRIC----------RI-G 80 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-G-GGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCC----------EE-C
T ss_pred cCCcCCceEEEeeCCCCchhHH-h-hhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCccc----------cc-C
Confidence 3345666777776 46666654 4 3333 777777777766666 45666777777777663332 11 2
Q ss_pred hhhhCCCCCCceEEEEeecchhhhHHHH--HhcCCCCCCEEEEEeCCCCCCCCccCc-c----cccccCCccEEEEEeec
Q 044597 150 EEILGRLPNLQNLRIWGDLSYYQSLLSK--SLCRLSCLESLKLANESKMPRRSNTIL-A----EYQFPPSLTHLSFSNIE 222 (341)
Q Consensus 150 ~~~l~~l~~L~~L~l~~~~~~~~~~l~~--~l~~l~~L~~L~l~~~~e~~~~l~~lp-~----~~~lp~~L~~L~l~~~~ 222 (341)
+..++.+++|++|++++|. ...+|. .+..+++|+.|++++| .+..+| + +..+ ++|+.|++++|.
T Consensus 81 ~~~~~~l~~L~~L~L~~N~---i~~~~~~~~l~~l~~L~~L~l~~N-----~i~~~~~~~~~~~~~l-~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 81 EGLDQALPDLTELILTNNS---LVELGDLDPLASLKSLTYLCILRN-----PVTNKKHYRLYVIYKV-PQVRVLDFQKVK 151 (176)
T ss_dssp SCHHHHCTTCCEEECCSCC---CCCGGGGGGGGGCTTCCEEECCSS-----GGGGSTTHHHHHHHHC-TTCSEETTEECC
T ss_pred cchhhcCCCCCEEECCCCc---CCcchhhHhhhcCCCCCEEEecCC-----CCCCcHhHHHHHHHHC-CccceeCCCcCC
Confidence 2213556666666666663 223333 4555666666666665 555555 3 4455 566666665554
No 124
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.16 E-value=2.4e-12 Score=124.39 Aligned_cols=226 Identities=13% Similarity=0.084 Sum_probs=115.5
Q ss_pred CcceeeeeccCC--CCcccChhhhhcCCCccEEecCCc-------cccccchhh------------------------cc
Q 044597 74 QEVRLRENSIIP--SLKSLPSSFLSSLLNLYTLEMPFS-------YIDHTADEF------------------------WK 120 (341)
Q Consensus 74 ~l~~Lr~L~l~~--~~~~lp~~if~~L~~L~~L~Ls~~-------~~~~lp~~i------------------------~~ 120 (341)
.+++|++|++.. .+..+|..+ .++++|++|+++.+ .+..++..+ ..
T Consensus 209 ~~~~L~~L~L~~~~~~~~l~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~ 287 (594)
T 2p1m_B 209 RCPNLKSLKLNRAVPLEKLATLL-QRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSV 287 (594)
T ss_dssp HCTTCCEEECCTTSCHHHHHHHH-HHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHH
T ss_pred hCCCCcEEecCCCCcHHHHHHHH-hcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHh
Confidence 357888888863 455566666 77888888875433 122233333 34
Q ss_pred cccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCC-----C
Q 044597 121 MSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANES-----K 195 (341)
Q Consensus 121 L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~-----e 195 (341)
+++|++|++++..+. +.. +...++++++|++|++.++. ....++.....+++|+.|++..++ .
T Consensus 288 ~~~L~~L~L~~~~l~---------~~~-l~~~~~~~~~L~~L~l~~~~--~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~ 355 (594)
T 2p1m_B 288 CSRLTTLNLSYATVQ---------SYD-LVKLLCQCPKLQRLWVLDYI--EDAGLEVLASTCKDLRELRVFPSEPFVMEP 355 (594)
T ss_dssp HTTCCEEECTTCCCC---------HHH-HHHHHTTCTTCCEEEEEGGG--HHHHHHHHHHHCTTCCEEEEECSCTTCSSC
T ss_pred hCCCCEEEccCCCCC---------HHH-HHHHHhcCCCcCEEeCcCcc--CHHHHHHHHHhCCCCCEEEEecCccccccc
Confidence 555555555542111 111 22225677888888888762 333444444557777777774310 0
Q ss_pred CCCCCccC--ccc-ccccCCccEEEEEeecCCCCCCccCc-CCCCCCeEEEEEeC----cEee-----------------
Q 044597 196 MPRRSNTI--LAE-YQFPPSLTHLSFSNIELIDDPMPALE-KLPVLQVLKLKYLG----RKLA----------------- 250 (341)
Q Consensus 196 ~~~~l~~l--p~~-~~lp~~L~~L~l~~~~l~~~~~~~l~-~l~~L~~L~l~~~~----~~~~----------------- 250 (341)
.. .++.. ..+ ..+ ++|++|.+..+.++...+..+. .+++|+.|++.+.+ ..+.
T Consensus 356 ~~-~l~~~~l~~l~~~~-~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~ 433 (594)
T 2p1m_B 356 NV-ALTEQGLVSVSMGC-PKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKD 433 (594)
T ss_dssp SS-CCCHHHHHHHHHHC-TTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTT
T ss_pred CC-CCCHHHHHHHHHhc-hhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCC
Confidence 00 11111 011 124 4555554444443322222222 24455555443110 0000
Q ss_pred ---------------ecC-CCCCcccEEEEecCCCCCcee-ec-CCCCCcccEEEEecCCCCCc--cccccCCCCCCcEE
Q 044597 251 ---------------CSS-DGFPKLKVLHLKSMLWLEEWT-MG-IKAMPKLECVIINPCAHLKR--IPEQLWCLKSLNKL 310 (341)
Q Consensus 251 ---------------~~~-~~~~~L~~L~l~~~~~l~~~~-~~-~~~l~~L~~L~l~~c~~l~~--lp~~l~~l~~L~~L 310 (341)
... ..+++|+.|+++++. +.... .. ...+++|++|++++|+. +. ++..+..+++|++|
T Consensus 434 L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L 511 (594)
T 2p1m_B 434 LRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSL 511 (594)
T ss_dssp CCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEE
T ss_pred ccEEeecCcccHHHHHHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEE
Confidence 000 025666666666643 32211 11 13479999999999994 43 22234568899999
Q ss_pred EEecCC
Q 044597 311 ELWWPE 316 (341)
Q Consensus 311 ~l~~~~ 316 (341)
++++|+
T Consensus 512 ~l~~~~ 517 (594)
T 2p1m_B 512 WMSSCS 517 (594)
T ss_dssp EEESSC
T ss_pred eeeCCC
Confidence 999998
No 125
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.15 E-value=1.9e-12 Score=128.06 Aligned_cols=109 Identities=15% Similarity=0.139 Sum_probs=78.7
Q ss_pred ccccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCc
Q 044597 69 SPIMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCC 147 (341)
Q Consensus 69 ~~~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~ 147 (341)
...+..+..|+.|+++ +.+..+|..+ .++++|++|+|++|.+..+|..++.|++|++|+|+++.+. .+
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~-~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~----------~l 285 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISANI-FKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT----------SL 285 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGGG-GGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS----------SC
T ss_pred hhhhccCCCCcEEECCCCCCCCCChhh-cCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC----------cc
Confidence 3456667778888887 4777888888 6788888888888877788888888888888888874442 23
Q ss_pred chhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeC
Q 044597 148 STEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANE 193 (341)
Q Consensus 148 ~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~ 193 (341)
+.. ++.+++|++|++++|. +..+|..++.+++|+.|+|++|
T Consensus 286 -p~~-~~~l~~L~~L~L~~N~---l~~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 286 -PAE-LGSCFQLKYFYFFDNM---VTTLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp -CSS-GGGGTTCSEEECCSSC---CCCCCSSTTSCTTCCCEECTTS
T ss_pred -Chh-hcCCCCCCEEECCCCC---CCccChhhhcCCCccEEeCCCC
Confidence 444 7778888888888773 4566777888888888888877
No 126
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.15 E-value=7.3e-12 Score=121.03 Aligned_cols=216 Identities=13% Similarity=0.120 Sum_probs=119.5
Q ss_pred cChhhhhcCCCccEEecCCccccc--cchhhcccccCceeeecCc-----------CCCCCCceEEe-------------
Q 044597 90 LPSSFLSSLLNLYTLEMPFSYIDH--TADEFWKMSKLRYLNFGAI-----------TLPAHPGKYSL------------- 143 (341)
Q Consensus 90 lp~~if~~L~~L~~L~Ls~~~~~~--lp~~i~~L~~L~~L~l~~~-----------~lp~~i~~~~~------------- 143 (341)
+|..+ ..+++|++|++++|.+.. ++..+..+++|++|++++. .. +.++.+.+
T Consensus 281 l~~~~-~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~-~~L~~L~L~~~~~~g~~~~~~ 358 (594)
T 2p1m_B 281 LPAVY-SVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTC-KDLRELRVFPSEPFVMEPNVA 358 (594)
T ss_dssp GGGGH-HHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHC-TTCCEEEEECSCTTCSSCSSC
T ss_pred HHHHH-HhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhC-CCCCEEEEecCcccccccCCC
Confidence 44433 566677777777765332 2223456666777666651 00 11233332
Q ss_pred -CCCcchhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEE-----eCCCCCCCCccCc-------cccccc
Q 044597 144 -HPCCSTEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLA-----NESKMPRRSNTIL-------AEYQFP 210 (341)
Q Consensus 144 -~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~-----~~~e~~~~l~~lp-------~~~~lp 210 (341)
.+.. +......+++|++|.+..+.. ....+......+++|+.|+++ +|. .++..| .+..+
T Consensus 359 l~~~~-l~~l~~~~~~L~~L~~~~~~l-~~~~~~~l~~~~~~L~~L~L~~~~~~~~~----~l~~~~~~~~~~~l~~~~- 431 (594)
T 2p1m_B 359 LTEQG-LVSVSMGCPKLESVLYFCRQM-TNAALITIARNRPNMTRFRLCIIEPKAPD----YLTLEPLDIGFGAIVEHC- 431 (594)
T ss_dssp CCHHH-HHHHHHHCTTCCEEEEEESCC-CHHHHHHHHHHCTTCCEEEEEESSTTCCC----TTTCCCTHHHHHHHHHHC-
T ss_pred CCHHH-HHHHHHhchhHHHHHHhcCCc-CHHHHHHHHhhCCCcceeEeecccCCCcc----cccCCchhhHHHHHHhhC-
Confidence 0011 222112367777776554431 112222222357888888888 333 555333 24456
Q ss_pred CCccEEEEEeecCCCCCCccCcC-CCCCCeEEEEEeCcEe---eecCCCCCcccEEEEecCCCCCcee--ecCCCCCccc
Q 044597 211 PSLTHLSFSNIELIDDPMPALEK-LPVLQVLKLKYLGRKL---ACSSDGFPKLKVLHLKSMLWLEEWT--MGIKAMPKLE 284 (341)
Q Consensus 211 ~~L~~L~l~~~~l~~~~~~~l~~-l~~L~~L~l~~~~~~~---~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~l~~L~ 284 (341)
++|+.|++++ .++...+..++. +++|+.|+++++.... ......+++|++|++++|+. .... .....+++|+
T Consensus 432 ~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~ 509 (594)
T 2p1m_B 432 KDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMR 509 (594)
T ss_dssp TTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSS
T ss_pred CCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCC
Confidence 7888888866 444444445555 8899999995443211 11113589999999999875 4322 2234589999
Q ss_pred EEEEecCCCCCcccccc-CCCCCCcEEEEecCC
Q 044597 285 CVIINPCAHLKRIPEQL-WCLKSLNKLELWWPE 316 (341)
Q Consensus 285 ~L~l~~c~~l~~lp~~l-~~l~~L~~L~l~~~~ 316 (341)
.|++++|+.-..-...+ ..+|+|+...+....
T Consensus 510 ~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 510 SLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp EEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred EEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence 99999998511111223 346777766665443
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.15 E-value=3.2e-11 Score=115.81 Aligned_cols=148 Identities=17% Similarity=0.175 Sum_probs=110.4
Q ss_pred ccCCcceeeeec-cC-CCCcccCh------hhhhc--CCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCce
Q 044597 71 IMDQEVRLRENS-II-PSLKSLPS------SFLSS--LLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGK 140 (341)
Q Consensus 71 ~~~~l~~Lr~L~-l~-~~~~~lp~------~if~~--L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~ 140 (341)
.++.+.+|+.|+ ++ +.+..++. .+ .. ...|++|++++|.+..+|. ++.+++|++|+++++.+.
T Consensus 404 ~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i-~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~----- 476 (567)
T 1dce_A 404 TLQYFSTLKAVDPMRAAYLDDLRSKFLLENSV-LKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR----- 476 (567)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH-HHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-----
T ss_pred HHHHHHhcccCcchhhcccchhhhhhhhcccc-cccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccccc-----
Confidence 456677777777 33 23333332 11 11 1258999999999999987 999999999999985543
Q ss_pred EEeCCCcchhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccC--c-ccccccCCccEEE
Q 044597 141 YSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTI--L-AEYQFPPSLTHLS 217 (341)
Q Consensus 141 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~l--p-~~~~lp~~L~~L~ 217 (341)
.. |.. ++.+++|+.|++++|. +..+| .++.+++|+.|++++| .++.+ | .+..+ ++|+.|+
T Consensus 477 -----~l-p~~-~~~l~~L~~L~Ls~N~---l~~lp-~l~~l~~L~~L~Ls~N-----~l~~~~~p~~l~~l-~~L~~L~ 539 (567)
T 1dce_A 477 -----AL-PPA-LAALRCLEVLQASDNA---LENVD-GVANLPRLQELLLCNN-----RLQQSAAIQPLVSC-PRLVLLN 539 (567)
T ss_dssp -----CC-CGG-GGGCTTCCEEECCSSC---CCCCG-GGTTCSSCCEEECCSS-----CCCSSSTTGGGGGC-TTCCEEE
T ss_pred -----cc-chh-hhcCCCCCEEECCCCC---CCCCc-ccCCCCCCcEEECCCC-----CCCCCCCcHHHhcC-CCCCEEE
Confidence 33 455 8999999999999985 44466 8999999999999998 78887 8 88899 9999999
Q ss_pred EEeecCCCCCCc---cCcCCCCCCeEEE
Q 044597 218 FSNIELIDDPMP---ALEKLPVLQVLKL 242 (341)
Q Consensus 218 l~~~~l~~~~~~---~l~~l~~L~~L~l 242 (341)
+++|.++..+.. .+..+|+|+.|++
T Consensus 540 L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 540 LQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred ecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 999997554332 1334889998863
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.11 E-value=1.9e-11 Score=120.93 Aligned_cols=117 Identities=16% Similarity=0.086 Sum_probs=96.1
Q ss_pred cChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEEEeecc
Q 044597 90 LPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLS 169 (341)
Q Consensus 90 lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 169 (341)
+|...|..+++|++|+|++|.+..+|..+..+++|++|+|+++.+. .. +.. ++++++|++|++++|.
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~----------~l-p~~-~~~l~~L~~L~Ls~N~- 281 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT----------EL-PAE-IKNLSNLRVLDLSHNR- 281 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS----------CC-CGG-GGGGTTCCEEECTTSC-
T ss_pred cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc----------cc-Chh-hhCCCCCCEEeCcCCc-
Confidence 3344449999999999999999999999999999999999985443 33 555 8999999999999985
Q ss_pred hhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc-ccccccCCccEEEEEeecCCCCC
Q 044597 170 YYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL-AEYQFPPSLTHLSFSNIELIDDP 227 (341)
Q Consensus 170 ~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp-~~~~lp~~L~~L~l~~~~l~~~~ 227 (341)
+..+|..++.+++|+.|+|++| .++.+| .++.+ ++|+.|+|++|.++...
T Consensus 282 --l~~lp~~~~~l~~L~~L~L~~N-----~l~~lp~~~~~l-~~L~~L~L~~N~l~~~~ 332 (727)
T 4b8c_D 282 --LTSLPAELGSCFQLKYFYFFDN-----MVTTLPWEFGNL-CNLQFLGVEGNPLEKQF 332 (727)
T ss_dssp --CSSCCSSGGGGTTCSEEECCSS-----CCCCCCSSTTSC-TTCCCEECTTSCCCSHH
T ss_pred --CCccChhhcCCCCCCEEECCCC-----CCCccChhhhcC-CCccEEeCCCCccCCCC
Confidence 4477888999999999999998 888999 88999 99999999999976543
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.08 E-value=6.1e-11 Score=97.76 Aligned_cols=120 Identities=17% Similarity=0.169 Sum_probs=91.3
Q ss_pred cEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchh-hhhCCCCCCceEEEEeecchhhhHHHHHhc
Q 044597 102 YTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTE-EILGRLPNLQNLRIWGDLSYYQSLLSKSLC 180 (341)
Q Consensus 102 ~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~ 180 (341)
++++++++.+..+|..+.. +|++|+++++.+. .. ++ ..++.+++|++|+++++.. ....|..+.
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~----------~~-~~~~~~~~l~~L~~L~Ls~N~l--~~~~~~~~~ 75 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELG----------RI-SSDGLFGRLPHLVKLELKRNQL--TGIEPNAFE 75 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCC----------SB-CCSCSGGGCTTCCEEECCSSCC--CCBCTTTTT
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCC----------cc-CCccccccCCCCCEEECCCCCC--CCcCHhHcC
Confidence 7899999999999987754 8999999984443 22 21 1177888999999988852 222356688
Q ss_pred CCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEE
Q 044597 181 RLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKL 242 (341)
Q Consensus 181 ~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l 242 (341)
.+++|+.|++++| .++.++ .+..+ ++|++|++++|.++......++.+++|++|++
T Consensus 76 ~l~~L~~L~Ls~N-----~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 133 (192)
T 1w8a_A 76 GASHIQELQLGEN-----KIKEISNKMFLGL-HQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL 133 (192)
T ss_dssp TCTTCCEEECCSC-----CCCEECSSSSTTC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEEC
T ss_pred CcccCCEEECCCC-----cCCccCHHHhcCC-CCCCEEECCCCcCCeeCHHHhhcCCCCCEEEe
Confidence 8888999998888 777776 57788 88888998888876666667778888888877
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.08 E-value=1.7e-10 Score=93.65 Aligned_cols=123 Identities=16% Similarity=0.198 Sum_probs=70.6
Q ss_pred eeeccC-CCCcccChhhhhcCCCccEEecCCccccccchh-hcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCC
Q 044597 79 RENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADE-FWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRL 156 (341)
Q Consensus 79 r~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~-i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l 156 (341)
+.+++. +.+..+|..+ .++|++|++++|.+..+|.. +..+++|++|+++++.+. .. ++..++.+
T Consensus 10 ~~l~~~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~----------~~-~~~~~~~l 75 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ----------SL-PDGVFDKL 75 (177)
T ss_dssp TEEECCSSCCSSCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC----------CC-CTTTTTTC
T ss_pred CEEEecCCCCccCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce----------Ee-ChhHccCC
Confidence 445554 4667777655 35777888888777777653 467777777777763332 11 22215566
Q ss_pred CCCceEEEEeecchhhhHHHH-HhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCC
Q 044597 157 PNLQNLRIWGDLSYYQSLLSK-SLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELI 224 (341)
Q Consensus 157 ~~L~~L~l~~~~~~~~~~l~~-~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~ 224 (341)
++|++|+++++. ...++. .+..+++|+.|++++| .++.+| .+..+ ++|++|++++|.+.
T Consensus 76 ~~L~~L~l~~N~---l~~~~~~~~~~l~~L~~L~l~~N-----~l~~~~~~~~~~l-~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 76 TKLTILYLHENK---LQSLPNGVFDKLTQLKELALDTN-----QLKSVPDGIFDRL-TSLQKIWLHTNPWD 137 (177)
T ss_dssp TTCCEEECCSSC---CCCCCTTTTTTCTTCCEEECCSS-----CCSCCCTTTTTTC-TTCCEEECCSSCBC
T ss_pred CccCEEECCCCC---ccccCHHHhhCCcccCEEECcCC-----cceEeCHHHhcCC-cccCEEEecCCCee
Confidence 666666666653 222222 2455566666666655 555555 23455 56666666666543
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.08 E-value=3.8e-11 Score=97.50 Aligned_cols=130 Identities=14% Similarity=0.087 Sum_probs=98.0
Q ss_pred hcCCCCCCEEEEEeCCCCCCCCccCcccccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeC-cEeeec-CCCC
Q 044597 179 LCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLG-RKLACS-SDGF 256 (341)
Q Consensus 179 l~~l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~-~~~~ 256 (341)
+..+.+|+.|++++| .++.+|.+..++++|+.|++++|.++.. +.++.+++|++|+++.+. ...+.. ...+
T Consensus 15 ~~~~~~L~~L~l~~n-----~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 87 (176)
T 1a9n_A 15 YTNAVRDRELDLRGY-----KIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQAL 87 (176)
T ss_dssp EECTTSCEEEECTTS-----CCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHC
T ss_pred cCCcCCceEEEeeCC-----CCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcC
Confidence 456778888888887 7777774444425899999999887543 678888999999884333 222222 2568
Q ss_pred CcccEEEEecCCCCCceee--cCCCCCcccEEEEecCCCCCccccc----cCCCCCCcEEEEecCCh
Q 044597 257 PKLKVLHLKSMLWLEEWTM--GIKAMPKLECVIINPCAHLKRIPEQ----LWCLKSLNKLELWWPEP 317 (341)
Q Consensus 257 ~~L~~L~l~~~~~l~~~~~--~~~~l~~L~~L~l~~c~~l~~lp~~----l~~l~~L~~L~l~~~~~ 317 (341)
++|++|+++++ .+..++. ..+.+++|+.|++.+|+ +..+|.. +..+++|+.|+++++..
T Consensus 88 ~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 88 PDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp TTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 89999999984 5677665 56689999999999999 7788875 78899999999999983
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.07 E-value=1.5e-10 Score=95.54 Aligned_cols=118 Identities=19% Similarity=0.160 Sum_probs=90.6
Q ss_pred cEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEEEeecchhhhHHH-HHhc
Q 044597 102 YTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLLS-KSLC 180 (341)
Q Consensus 102 ~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~-~~l~ 180 (341)
++++++++.+..+|..+. ++|++|+++++.+. .. +.. +..+++|++|+++++. +..++ ..+.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~----------~i-p~~-~~~l~~L~~L~Ls~N~---i~~i~~~~f~ 75 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFT----------LV-PKE-LSNYKHLTLIDLSNNR---ISTLSNQSFS 75 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCC----------SC-CGG-GGGCTTCCEEECCSSC---CCCCCTTTTT
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCc----------hh-HHH-hhcccCCCEEECCCCc---CCEeCHhHcc
Confidence 678999999999997664 68999999985443 33 444 8888899999998885 22333 4578
Q ss_pred CCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEE
Q 044597 181 RLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKL 242 (341)
Q Consensus 181 ~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l 242 (341)
++++|+.|++++| .++.++ .+..+ ++|+.|++++|.++..+...+..+++|+.|++
T Consensus 76 ~l~~L~~L~Ls~N-----~l~~i~~~~f~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 133 (193)
T 2wfh_A 76 NMTQLLTLILSYN-----RLRCIPPRTFDGL-KSLRLLSLHGNDISVVPEGAFNDLSALSHLAI 133 (193)
T ss_dssp TCTTCCEEECCSS-----CCCBCCTTTTTTC-TTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCCCEEECCCC-----ccCEeCHHHhCCC-CCCCEEECCCCCCCeeChhhhhcCccccEEEe
Confidence 8888888888888 777776 57788 88888888888876656556777888888877
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.99 E-value=9.5e-12 Score=103.11 Aligned_cols=129 Identities=17% Similarity=0.159 Sum_probs=102.2
Q ss_pred ccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcch
Q 044597 71 IMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCST 149 (341)
Q Consensus 71 ~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~ 149 (341)
.+..+.+|++|+++ +.+..+| .+ +++++|++|++++|.+..+|..+..+++|++|+++++.+. . +
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~-~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~-----------~-l 108 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SL-SGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIA-----------S-L 108 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CH-HHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECC-----------C-H
T ss_pred HHhcCCCCCEEECCCCCCcccc-cc-ccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCC-----------c-C
Confidence 55668899999998 5788888 67 9999999999999999999998899999999999984443 1 5
Q ss_pred hhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc------------ccccccCCccEEE
Q 044597 150 EEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL------------AEYQFPPSLTHLS 217 (341)
Q Consensus 150 ~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp------------~~~~lp~~L~~L~ 217 (341)
+. ++.+++|++|++++|.......+ ..+..+++|+.|++++| .+...+ .+..+ ++|+.|+
T Consensus 109 ~~-~~~l~~L~~L~l~~N~i~~~~~~-~~l~~l~~L~~L~l~~N-----~l~~~~~~~~~~~~~~~~~~~~l-~~L~~Ld 180 (198)
T 1ds9_A 109 SG-IEKLVNLRVLYMSNNKITNWGEI-DKLAALDKLEDLLLAGN-----PLYNDYKENNATSEYRIEVVKRL-PNLKKLD 180 (198)
T ss_dssp HH-HHHHHHSSEEEESEEECCCHHHH-HHHTTTTTCSEEEECSC-----HHHHHHHTTTTHHHHHHHHHHHC-SSCSEEC
T ss_pred Cc-cccCCCCCEEECCCCcCCchhHH-HHHhcCCCCCEEEecCC-----ccccccccccchHHHHHHHHHhC-CCcEEEC
Confidence 56 88899999999999853322222 47899999999999987 554331 25678 8999886
Q ss_pred EEeecC
Q 044597 218 FSNIEL 223 (341)
Q Consensus 218 l~~~~l 223 (341)
++.+
T Consensus 181 --~~~i 184 (198)
T 1ds9_A 181 --GMPV 184 (198)
T ss_dssp --CGGG
T ss_pred --Cccc
Confidence 5554
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.98 E-value=7.6e-10 Score=89.75 Aligned_cols=120 Identities=16% Similarity=0.164 Sum_probs=86.5
Q ss_pred ccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEEEeecchhhhHHHH-Hh
Q 044597 101 LYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLLSK-SL 179 (341)
Q Consensus 101 L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~-~l 179 (341)
.+.++++++.+..+|..+. ++|++|+++++.+. .. ++..++.+++|++|+++++. ...++. .+
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~----------~~-~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~ 72 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQ----------SL-PHGVFDKLTQLTKLSLSQNQ---IQSLPDGVF 72 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCC----------CC-CTTTTTTCTTCSEEECCSSC---CCCCCTTTT
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCccc----------Ee-CHHHhcCcccccEEECCCCc---ceEeChhHc
Confidence 5678999999999986554 78999999984443 22 22227788888888888874 333333 35
Q ss_pred cCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEE
Q 044597 180 CRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKL 242 (341)
Q Consensus 180 ~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l 242 (341)
..+++|+.|++++| .++.+| .+..+ ++|++|++++|.++..+...+..+++|++|++
T Consensus 73 ~~l~~L~~L~l~~N-----~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 131 (177)
T 2o6r_A 73 DKLTKLTILYLHEN-----KLQSLPNGVFDKL-TQLKELALDTNQLKSVPDGIFDRLTSLQKIWL 131 (177)
T ss_dssp TTCTTCCEEECCSS-----CCCCCCTTTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred cCCCccCEEECCCC-----CccccCHHHhhCC-cccCEEECcCCcceEeCHHHhcCCcccCEEEe
Confidence 77888888888887 777776 46677 88888888888876555545667777777777
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.92 E-value=2.1e-08 Score=92.14 Aligned_cols=219 Identities=13% Similarity=0.115 Sum_probs=138.0
Q ss_pred eeeeeccCCCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCC
Q 044597 77 RLRENSIIPSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRL 156 (341)
Q Consensus 77 ~Lr~L~l~~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l 156 (341)
.|+.+.+.+.+..++...|.++++|+.++++.|.+..+|...-...+|+.+.+.. ....++... +..+
T Consensus 158 ~L~~i~lp~~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~-------~l~~I~~~a-----F~~~ 225 (401)
T 4fdw_A 158 TVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV-------TLKEIGSQA-----FLKT 225 (401)
T ss_dssp CCCEEECCTTCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT-------TCCEECTTT-----TTTC
T ss_pred CceEEEeCCCccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCC-------chheehhhH-----hhCC
Confidence 4555555556666666666666667777776666666665433346666666543 111111222 8889
Q ss_pred CCCceEEEEeecchhhhHHH-HHhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCC-----CCCC
Q 044597 157 PNLQNLRIWGDLSYYQSLLS-KSLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELI-----DDPM 228 (341)
Q Consensus 157 ~~L~~L~l~~~~~~~~~~l~-~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~-----~~~~ 228 (341)
++|+.+.+..+- ..+. ..+.+ .+|+.+.+.. .+..++ .+..+ ++|+.+.+.++.+. ....
T Consensus 226 ~~L~~l~l~~~l----~~I~~~aF~~-~~L~~i~lp~------~i~~I~~~aF~~c-~~L~~l~l~~~~~~~~~~~~I~~ 293 (401)
T 4fdw_A 226 SQLKTIEIPENV----STIGQEAFRE-SGITTVKLPN------GVTNIASRAFYYC-PELAEVTTYGSTFNDDPEAMIHP 293 (401)
T ss_dssp TTCCCEECCTTC----CEECTTTTTT-CCCSEEEEET------TCCEECTTTTTTC-TTCCEEEEESSCCCCCTTCEECT
T ss_pred CCCCEEecCCCc----cCcccccccc-CCccEEEeCC------CccEEChhHhhCC-CCCCEEEeCCccccCCcccEECH
Confidence 999999887531 2222 23444 7899999954 567776 66778 89999999988753 2344
Q ss_pred ccCcCCCCCCeEEEEEeCcEee-ecCCCCCcccEEEEecCCCCCceeecC-CCCCcccEEEEecCCCCCcccc-ccCCCC
Q 044597 229 PALEKLPVLQVLKLKYLGRKLA-CSSDGFPKLKVLHLKSMLWLEEWTMGI-KAMPKLECVIINPCAHLKRIPE-QLWCLK 305 (341)
Q Consensus 229 ~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~l~~L~~L~l~~c~~l~~lp~-~l~~l~ 305 (341)
.+|..+++|+.+.+...-..+. ....++++|+.+.+.. +++.+.... ..+ +|+.+.+.++. ...++. .+.+++
T Consensus 294 ~aF~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n~-~~~l~~~~F~~~~ 369 (401)
T 4fdw_A 294 YCLEGCPKLARFEIPESIRILGQGLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGTT-PPQVFEKVWYGFP 369 (401)
T ss_dssp TTTTTCTTCCEECCCTTCCEECTTTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCSS-CCBCCCSSCCCSC
T ss_pred HHhhCCccCCeEEeCCceEEEhhhhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCCC-CcccccccccCCC
Confidence 5788899999998832111221 2345678899999964 466665432 245 89999999886 555543 344554
Q ss_pred -CCcEEEEecCChHHHHHhhhc
Q 044597 306 -SLNKLELWWPEPKLRQQLWEF 326 (341)
Q Consensus 306 -~L~~L~l~~~~~~~~~~~~~~ 326 (341)
+++.|.+-.. -.+.++..
T Consensus 370 ~~l~~l~vp~~---~~~~y~~a 388 (401)
T 4fdw_A 370 DDITVIRVPAE---SVEKYKNA 388 (401)
T ss_dssp TTCCEEEECGG---GHHHHHHS
T ss_pred CCccEEEeCHH---HHHHhhhc
Confidence 6788877553 45566653
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.91 E-value=6.2e-09 Score=93.06 Aligned_cols=220 Identities=10% Similarity=0.030 Sum_probs=125.6
Q ss_pred cceeeeeccCCCCcccChhhhhcCCCccEEecCCccccccch-hhcccccCceeeecCcCCCCCCceEEeCC-Ccchhhh
Q 044597 75 EVRLRENSIIPSLKSLPSSFLSSLLNLYTLEMPFSYIDHTAD-EFWKMSKLRYLNFGAITLPAHPGKYSLHP-CCSTEEI 152 (341)
Q Consensus 75 l~~Lr~L~l~~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~-~i~~L~~L~~L~l~~~~lp~~i~~~~~~~-~~~~~~~ 152 (341)
+.+|+.+.+..+++.+++..|..+++|+.|+++.|.+..++. .|..+.++.++.+.... ..... ......
T Consensus 100 ~~~L~~l~L~~~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~-------~~~~~~~i~~~~- 171 (329)
T 3sb4_A 100 KQTLEKVILSEKIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSD-------AYRFKNRWEHFA- 171 (329)
T ss_dssp CTTCCC-CBCTTCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTH-------HHHTSTTTTTSC-
T ss_pred cCCCcEEECCccccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchh-------hhhccccccccc-
Confidence 677777777667777777766777777777777776666643 35555555555443200 00000 000011
Q ss_pred hCCCCCCc-eEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCccc-ccccCCccEEEEEeecCCCCCCcc
Q 044597 153 LGRLPNLQ-NLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTILAE-YQFPPSLTHLSFSNIELIDDPMPA 230 (341)
Q Consensus 153 l~~l~~L~-~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp~~-~~lp~~L~~L~l~~~~l~~~~~~~ 230 (341)
+..+.+|+ .+.+.... .....+...-....++..+.+.+.. ....+..+ ..+ ++|+.+++.+|.++..+..+
T Consensus 172 f~~~~~L~~~i~~~~~~-~l~~~~~~~~~~~~~~~~l~~~~~l----~~~~~~~l~~~~-~~L~~l~L~~n~i~~I~~~a 245 (329)
T 3sb4_A 172 FIEGEPLETTIQVGAMG-KLEDEIMKAGLQPRDINFLTIEGKL----DNADFKLIRDYM-PNLVSLDISKTNATTIPDFT 245 (329)
T ss_dssp EEESCCCEEEEEECTTC-CHHHHHHHTTCCGGGCSEEEEEECC----CHHHHHHHHHHC-TTCCEEECTTBCCCEECTTT
T ss_pred cccccccceeEEecCCC-cHHHHHhhcccCccccceEEEeeee----cHHHHHHHHHhc-CCCeEEECCCCCcceecHhh
Confidence 33445555 34333221 0111111222245666777776531 11111111 125 78888888888776666667
Q ss_pred CcCCCCCCeEEEEEeCcEee-ecCCCCCccc-EEEEecCCCCCceeec-CCCCCcccEEEEecCCCCCcccc-ccCCCCC
Q 044597 231 LEKLPVLQVLKLKYLGRKLA-CSSDGFPKLK-VLHLKSMLWLEEWTMG-IKAMPKLECVIINPCAHLKRIPE-QLWCLKS 306 (341)
Q Consensus 231 l~~l~~L~~L~l~~~~~~~~-~~~~~~~~L~-~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~ 306 (341)
|..+++|+.+.+..+-..+. ....++++|+ .+.+.+ .++.+... ...+++|+.+.+.++. ++.++. .+.++++
T Consensus 246 F~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~-i~~I~~~aF~~~~~ 322 (329)
T 3sb4_A 246 FAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDK-ITTLGDELFGNGVP 322 (329)
T ss_dssp TTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSC-CCEECTTTTCTTCC
T ss_pred hhCCCCCCEEECCcccceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCc-cCccchhhhcCCcc
Confidence 88888888888822222222 2345677888 888876 56666533 3457889999987776 777765 5677888
Q ss_pred CcEEE
Q 044597 307 LNKLE 311 (341)
Q Consensus 307 L~~L~ 311 (341)
|+.+.
T Consensus 323 L~~ly 327 (329)
T 3sb4_A 323 SKLIY 327 (329)
T ss_dssp CCEEE
T ss_pred hhhhc
Confidence 98875
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.81 E-value=3e-09 Score=86.08 Aligned_cols=50 Identities=18% Similarity=0.164 Sum_probs=34.9
Q ss_pred eeeccC-CCCcccChhhhhcCCCccEEecCCcccccc-chhhcccccCceeeecC
Q 044597 79 RENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHT-ADEFWKMSKLRYLNFGA 131 (341)
Q Consensus 79 r~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~l-p~~i~~L~~L~~L~l~~ 131 (341)
+.++++ +.+..+|..+ . ++|++|+|++|.+..+ |..+..+++|++|++++
T Consensus 15 ~~l~~~~n~l~~iP~~~-~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 66 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI-P--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNS 66 (174)
T ss_dssp SEEECCSSCCSSCCSCC-C--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCCccCCCc-C--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCC
Confidence 456665 4677777766 3 7778888888877776 44567777777777776
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.80 E-value=3.4e-09 Score=85.43 Aligned_cols=50 Identities=18% Similarity=0.196 Sum_probs=33.5
Q ss_pred eeeccC-CCCcccChhhhhcCCCccEEecCCcccccc-chhhcccccCceeeecC
Q 044597 79 RENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHT-ADEFWKMSKLRYLNFGA 131 (341)
Q Consensus 79 r~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~l-p~~i~~L~~L~~L~l~~ 131 (341)
+.++++ +.+..+|..+ . ++|++|+|++|.+..+ |..+..+++|++|++++
T Consensus 12 ~~l~~s~n~l~~ip~~~-~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~ 63 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI-P--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDN 63 (170)
T ss_dssp TEEECTTSCCSSCCSCC-C--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred CEEEeCCCCcCccCccC-C--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCC
Confidence 456665 4677777666 2 6677777777777766 44566677777777766
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.80 E-value=3.9e-09 Score=85.40 Aligned_cols=62 Identities=26% Similarity=0.294 Sum_probs=28.5
Q ss_pred hCCCCCCceEEEEeecchhhhHHHHH-hcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecC
Q 044597 153 LGRLPNLQNLRIWGDLSYYQSLLSKS-LCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIEL 223 (341)
Q Consensus 153 l~~l~~L~~L~l~~~~~~~~~~l~~~-l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l 223 (341)
++.+++|++|++++|. +..+|.. +..+++|+.|++++| .+..+| .+..+ ++|++|++++|.+
T Consensus 53 ~~~l~~L~~L~Ls~N~---l~~i~~~~~~~l~~L~~L~L~~N-----~l~~l~~~~~~~l-~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 53 FDHLVNLQQLYFNSNK---LTAIPTGVFDKLTQLTQLDLNDN-----HLKSIPRGAFDNL-KSLTHIYLYNNPW 117 (174)
T ss_dssp TTTCTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEECCSS-----CCCCCCTTTTTTC-TTCSEEECCSSCB
T ss_pred hcCCcCCCEEECCCCC---CCccChhHhCCcchhhEEECCCC-----ccceeCHHHhccc-cCCCEEEeCCCCc
Confidence 4445555555555442 2223222 344455555555544 444444 24444 4555555555544
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.76 E-value=4.8e-09 Score=84.50 Aligned_cols=56 Identities=14% Similarity=0.199 Sum_probs=26.0
Q ss_pred ceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchh-hcccccCceeeecC
Q 044597 76 VRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADE-FWKMSKLRYLNFGA 131 (341)
Q Consensus 76 ~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~-i~~L~~L~~L~l~~ 131 (341)
.++++|+++ +.+..++...|+++++|++|+|++|.+..+|.. +..+++|++|++++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 344444444 344444333225555555555555544444433 24455555555544
No 141
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.69 E-value=3.7e-09 Score=95.61 Aligned_cols=132 Identities=23% Similarity=0.241 Sum_probs=70.4
Q ss_pred HHhcCCCCCCEEEEEeCCCCCCCCccCcccccccCCccEEEEEeecCCCCCCccCc--CCCCCCeEEEEEe----CcE--
Q 044597 177 KSLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSNIELIDDPMPALE--KLPVLQVLKLKYL----GRK-- 248 (341)
Q Consensus 177 ~~l~~l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l~~~~l~~~~~~~l~--~l~~L~~L~l~~~----~~~-- 248 (341)
..+..+++|+.|.++++ ....++.+ .+ ++|++|.+..|.+....+..+. .+|+|+.|+|... +..
T Consensus 166 ~ll~~~P~L~~L~L~g~-----~~l~l~~~-~~-~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~ 238 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGT-----NNLSIGKK-PR-PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGD 238 (362)
T ss_dssp HHHHTCTTCCEEEEECC-----BTCBCCSC-BC-TTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSC
T ss_pred HHHhcCCCCcEEEEeCC-----CCceeccc-cC-CCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchh
Confidence 33445566666666554 11122311 24 5666666666655433333333 5666666666210 000
Q ss_pred e-----eecCCCCCcccEEEEecCCCCCce---eecCCCCCcccEEEEecCCCCCc-----cccccCCCCCCcEEEEecC
Q 044597 249 L-----ACSSDGFPKLKVLHLKSMLWLEEW---TMGIKAMPKLECVIINPCAHLKR-----IPEQLWCLKSLNKLELWWP 315 (341)
Q Consensus 249 ~-----~~~~~~~~~L~~L~l~~~~~l~~~---~~~~~~l~~L~~L~l~~c~~l~~-----lp~~l~~l~~L~~L~l~~~ 315 (341)
. ......||+|+.|.+.+|...... ......+|+|++|+++.|. ++. ++.++.++++|+.|++++|
T Consensus 239 ~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 239 MNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp GGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred HHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhhcccCCcceEEECCCC
Confidence 0 111235788888888775432111 1122457888888887665 544 3444556778888888877
Q ss_pred C
Q 044597 316 E 316 (341)
Q Consensus 316 ~ 316 (341)
.
T Consensus 318 ~ 318 (362)
T 2ra8_A 318 Y 318 (362)
T ss_dssp B
T ss_pred c
Confidence 5
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.53 E-value=7.8e-07 Score=81.60 Aligned_cols=209 Identities=11% Similarity=0.128 Sum_probs=131.8
Q ss_pred eeeeeccCCCCcccChhhhhcCCCccEEecCCccccccc-hhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCC
Q 044597 77 RLRENSIIPSLKSLPSSFLSSLLNLYTLEMPFSYIDHTA-DEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGR 155 (341)
Q Consensus 77 ~Lr~L~l~~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp-~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~ 155 (341)
+|+.+.+.++++.++...|.+. +|+.+.+.. .+..++ ..|..+.+|+.+++..+.+. .. +..++.
T Consensus 136 ~L~~i~l~~~i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~----------~I-~~~aF~- 201 (401)
T 4fdw_A 136 QIAKVVLNEGLKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT----------KL-PASTFV- 201 (401)
T ss_dssp CCSEEECCTTCCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS----------EE-CTTTTT-
T ss_pred CccEEEeCCCccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce----------Ee-chhhEe-
Confidence 5666666666777777666663 577777765 445553 35677777777777652221 11 111144
Q ss_pred CCCCceEEEEeecchhhhHHH-HHhcCCCCCCEEEEEeCCCCCCCCccCc-ccccccCCccEEEEEeecCCCCCCccCcC
Q 044597 156 LPNLQNLRIWGDLSYYQSLLS-KSLCRLSCLESLKLANESKMPRRSNTIL-AEYQFPPSLTHLSFSNIELIDDPMPALEK 233 (341)
Q Consensus 156 l~~L~~L~l~~~~~~~~~~l~-~~l~~l~~L~~L~l~~~~e~~~~l~~lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~ 233 (341)
..+|+.+.+..+ ...++ ..+.++++|+.+.+.. .+..++ ....- .+|+.+.+.++ +......+|..
T Consensus 202 ~~~L~~l~lp~~----l~~I~~~aF~~~~~L~~l~l~~------~l~~I~~~aF~~-~~L~~i~lp~~-i~~I~~~aF~~ 269 (401)
T 4fdw_A 202 YAGIEEVLLPVT----LKEIGSQAFLKTSQLKTIEIPE------NVSTIGQEAFRE-SGITTVKLPNG-VTNIASRAFYY 269 (401)
T ss_dssp TCCCSEEECCTT----CCEECTTTTTTCTTCCCEECCT------TCCEECTTTTTT-CCCSEEEEETT-CCEECTTTTTT
T ss_pred ecccCEEEeCCc----hheehhhHhhCCCCCCEEecCC------CccCcccccccc-CCccEEEeCCC-ccEEChhHhhC
Confidence 467777777532 22222 3467788888888865 455565 22223 57888888543 44555667889
Q ss_pred CCCCCeEEEEEeCc-------EeeecCCCCCcccEEEEecCCCCCceeecC-CCCCcccEEEEecCCCCCcccc-ccCCC
Q 044597 234 LPVLQVLKLKYLGR-------KLACSSDGFPKLKVLHLKSMLWLEEWTMGI-KAMPKLECVIINPCAHLKRIPE-QLWCL 304 (341)
Q Consensus 234 l~~L~~L~l~~~~~-------~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~l~~L~~L~l~~c~~l~~lp~-~l~~l 304 (341)
+++|+.+.+..... .......++++|+.+.+.+ .++.+.... ..+++|+.+.+.++ ++.++. .+.++
T Consensus 270 c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~ 345 (401)
T 4fdw_A 270 CPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT 345 (401)
T ss_dssp CTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS
T ss_pred CCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC
Confidence 99999999822111 1122345778899999874 466665432 34788999999554 677654 45678
Q ss_pred CCCcEEEEecCC
Q 044597 305 KSLNKLELWWPE 316 (341)
Q Consensus 305 ~~L~~L~l~~~~ 316 (341)
+|+.+.+.++.
T Consensus 346 -~L~~l~l~~n~ 356 (401)
T 4fdw_A 346 -GIKEVKVEGTT 356 (401)
T ss_dssp -CCCEEEECCSS
T ss_pred -CCCEEEEcCCC
Confidence 99999999865
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.48 E-value=9.7e-08 Score=85.80 Aligned_cols=97 Identities=20% Similarity=0.169 Sum_probs=72.3
Q ss_pred eccC-C-CCcccChhhhhcCCCccEEecCC-ccccccc-hhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCC
Q 044597 81 NSII-P-SLKSLPSSFLSSLLNLYTLEMPF-SYIDHTA-DEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRL 156 (341)
Q Consensus 81 L~l~-~-~~~~lp~~if~~L~~L~~L~Ls~-~~~~~lp-~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l 156 (341)
++.+ . .+..+|. + ..+++|++|+|++ |.+..+| ..|..|++|++|+|+++.+- .. ++..++++
T Consensus 13 v~~~~~n~l~~ip~-l-~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~----------~~-~~~~~~~l 79 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-L-PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR----------FV-APDAFHFT 79 (347)
T ss_dssp EECCSSCCCTTTTT-S-CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC----------EE-CTTGGGSC
T ss_pred EEcCCCCCCCccCC-C-CCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccc----------ee-CHHHhcCC
Confidence 4554 3 6889999 7 9999999999996 8999987 46899999999999985443 22 33227889
Q ss_pred CCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeC
Q 044597 157 PNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANE 193 (341)
Q Consensus 157 ~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~ 193 (341)
++|+.|++++|. +..+|..+.....|+.|++.+|
T Consensus 80 ~~L~~L~l~~N~---l~~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 80 PRLSRLNLSFNA---LESLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp SCCCEEECCSSC---CSCCCSTTTCSCCCCEEECCSS
T ss_pred cCCCEEeCCCCc---cceeCHHHcccCCceEEEeeCC
Confidence 999999998884 4445544333333888888876
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.41 E-value=1.3e-07 Score=84.92 Aligned_cols=85 Identities=25% Similarity=0.193 Sum_probs=69.5
Q ss_pred cCCcceeeeeccC--CCCcccChhhhhcCCCccEEecCCccccccch-hhcccccCceeeecCcCCCCCCceEEeCCCcc
Q 044597 72 MDQEVRLRENSII--PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTAD-EFWKMSKLRYLNFGAITLPAHPGKYSLHPCCS 148 (341)
Q Consensus 72 ~~~l~~Lr~L~l~--~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~-~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~ 148 (341)
+..+.+|+.|+++ +.+..+|...|++|++|++|+|++|.+..+|. .|..|++|++|+|+++.+- ..
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~----------~~- 95 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE----------SL- 95 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS----------CC-
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc----------ee-
Confidence 8888999999996 58899997666999999999999999988865 6799999999999995443 22
Q ss_pred hhhhhCCCCCCceEEEEeec
Q 044597 149 TEEILGRLPNLQNLRIWGDL 168 (341)
Q Consensus 149 ~~~~l~~l~~L~~L~l~~~~ 168 (341)
++..+..++ |+.|++.+|.
T Consensus 96 ~~~~~~~~~-L~~l~l~~N~ 114 (347)
T 2ifg_A 96 SWKTVQGLS-LQELVLSGNP 114 (347)
T ss_dssp CSTTTCSCC-CCEEECCSSC
T ss_pred CHHHcccCC-ceEEEeeCCC
Confidence 333155555 9999999886
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.37 E-value=2.9e-08 Score=90.20 Aligned_cols=151 Identities=15% Similarity=0.127 Sum_probs=92.4
Q ss_pred ceeeeeccC-CCCcccChhhhh-----cCCCccEEecCCcccccc--chhhcccccCceeeecCcCCCCCCceEEeCCCc
Q 044597 76 VRLRENSII-PSLKSLPSSFLS-----SLLNLYTLEMPFSYIDHT--ADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCC 147 (341)
Q Consensus 76 ~~Lr~L~l~-~~~~~lp~~if~-----~L~~L~~L~Ls~~~~~~l--p~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~ 147 (341)
.+++.|+++ +.+.......|. ..++|++|+|++|.+..- ..-...+++|++|+++++.+.. ..
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~---------~~ 142 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGP---------EA 142 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCH---------HH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCH---------HH
Confidence 467788887 455443222112 236899999999976532 2223456788999998844421 11
Q ss_pred chhh---hh-CCCCCCceEEEEeecch--hhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccC-----c-ccccccCCccE
Q 044597 148 STEE---IL-GRLPNLQNLRIWGDLSY--YQSLLSKSLCRLSCLESLKLANESKMPRRSNTI-----L-AEYQFPPSLTH 215 (341)
Q Consensus 148 ~~~~---~l-~~l~~L~~L~l~~~~~~--~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~l-----p-~~~~lp~~L~~ 215 (341)
... ++ ...++|++|++++|... ....++..+...++|++|++++| .++.. + .+... ++|+.
T Consensus 143 -~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-----~l~~~g~~~L~~~L~~~-~~L~~ 215 (372)
T 3un9_A 143 -CKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT-----GLGDEGLELLAAQLDRN-RQLQE 215 (372)
T ss_dssp -HHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS-----SCHHHHHHHHHHHGGGC-SCCCE
T ss_pred -HHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC-----CCCcHHHHHHHHHHhcC-CCcCe
Confidence 122 12 35678899998888632 24556667778888999988887 55532 3 34455 68888
Q ss_pred EEEEeecCCCCCCcc----CcCCCCCCeEEE
Q 044597 216 LSFSNIELIDDPMPA----LEKLPVLQVLKL 242 (341)
Q Consensus 216 L~l~~~~l~~~~~~~----l~~l~~L~~L~l 242 (341)
|++++|.++...... +...++|++|++
T Consensus 216 L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~L 246 (372)
T 3un9_A 216 LNVAYNGAGDTAALALARAAREHPSLELLHL 246 (372)
T ss_dssp EECCSSCCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred EECCCCCCCHHHHHHHHHHHHhCCCCCEEec
Confidence 888888864432222 233456666666
No 146
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.36 E-value=1.1e-06 Score=78.32 Aligned_cols=197 Identities=14% Similarity=0.002 Sum_probs=130.1
Q ss_pred cccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCcc----cccc-chhhcccccCc-eeeecC-cCCCCCCceE
Q 044597 70 PIMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSY----IDHT-ADEFWKMSKLR-YLNFGA-ITLPAHPGKY 141 (341)
Q Consensus 70 ~~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~----~~~l-p~~i~~L~~L~-~L~l~~-~~lp~~i~~~ 141 (341)
..+..+.+|+.+++. +.+..+++..|..+.++.++.+..+. ...+ +..+..+.+|+ .+.+.. ..+|
T Consensus 118 ~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~------ 191 (329)
T 3sb4_A 118 AAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLE------ 191 (329)
T ss_dssp TTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHH------
T ss_pred HHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHH------
Confidence 457889999999998 57889999988999999988887742 1222 12344555665 444432 1111
Q ss_pred EeCCCcchhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEE
Q 044597 142 SLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFS 219 (341)
Q Consensus 142 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~ 219 (341)
.. ...+--...++..+.+.+.- ...........+++|+.++++.+ .+..+| .+..+ .+|+.+.+.
T Consensus 192 ----~~-~~~~~~~~~~~~~l~~~~~l--~~~~~~~l~~~~~~L~~l~L~~n-----~i~~I~~~aF~~~-~~L~~l~l~ 258 (329)
T 3sb4_A 192 ----DE-IMKAGLQPRDINFLTIEGKL--DNADFKLIRDYMPNLVSLDISKT-----NATTIPDFTFAQK-KYLLKIKLP 258 (329)
T ss_dssp ----HH-HHHTTCCGGGCSEEEEEECC--CHHHHHHHHHHCTTCCEEECTTB-----CCCEECTTTTTTC-TTCCEEECC
T ss_pred ----HH-HhhcccCccccceEEEeeee--cHHHHHHHHHhcCCCeEEECCCC-----CcceecHhhhhCC-CCCCEEECC
Confidence 00 00101235667788877653 22222222234799999999987 788888 67788 999999999
Q ss_pred eecCCCCCCccCcCCCCCC-eEEEEEeCcEee-ecCCCCCcccEEEEecCCCCCceeec-CCCCCcccEEE
Q 044597 220 NIELIDDPMPALEKLPVLQ-VLKLKYLGRKLA-CSSDGFPKLKVLHLKSMLWLEEWTMG-IKAMPKLECVI 287 (341)
Q Consensus 220 ~~~l~~~~~~~l~~l~~L~-~L~l~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~ 287 (341)
++ +......+|..+++|+ .+.+...-..+. ....++++|+.+++.+ +.++.++.. ...+++|+.+.
T Consensus 259 ~n-i~~I~~~aF~~~~~L~~~l~l~~~l~~I~~~aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 259 HN-LKTIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TT-CCEECTTTTTTCTTCCEEEEECTTCCEECTTTTTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred cc-cceehHHHhhCChhccEEEEEcccceEEchhhhhCCccCCEEEeCC-CccCccchhhhcCCcchhhhc
Confidence 87 5666667899999999 999933222222 3456788999999876 567777643 33466777664
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.09 E-value=1.6e-06 Score=78.19 Aligned_cols=58 Identities=12% Similarity=0.071 Sum_probs=34.0
Q ss_pred CCCcccEEEEecCCCCCce-----eecCCCCCcccEEEEecCCCCCccccccCCCCC--CcEEEEecCC
Q 044597 255 GFPKLKVLHLKSMLWLEEW-----TMGIKAMPKLECVIINPCAHLKRIPEQLWCLKS--LNKLELWWPE 316 (341)
Q Consensus 255 ~~~~L~~L~l~~~~~l~~~-----~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~--L~~L~l~~~~ 316 (341)
.+|+|++|+++. +.+... ......+++|+.|++++|. +..- ++..+.. ...+++++..
T Consensus 277 ~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~-i~d~--~~~~l~~alg~~~~~~~~~ 341 (362)
T 2ra8_A 277 ILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYNY-LSDE--MKKELQKSLPMKIDVSDSQ 341 (362)
T ss_dssp SGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSBB-CCHH--HHHHHHHHCCSEEECCSBC
T ss_pred cCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCCc-CCHH--HHHHHHHHcCCEEEecCCc
Confidence 578888888865 445542 2222357899999998886 4431 1111111 2457777665
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.06 E-value=2.9e-07 Score=83.57 Aligned_cols=144 Identities=19% Similarity=0.170 Sum_probs=98.3
Q ss_pred cceeeeeccC-CCCccc-ChhhhhcCCCccEEecCCccccccc-hhh-----cccccCceeeecCcCCCCCCceEEeCC-
Q 044597 75 EVRLRENSII-PSLKSL-PSSFLSSLLNLYTLEMPFSYIDHTA-DEF-----WKMSKLRYLNFGAITLPAHPGKYSLHP- 145 (341)
Q Consensus 75 l~~Lr~L~l~-~~~~~l-p~~if~~L~~L~~L~Ls~~~~~~lp-~~i-----~~L~~L~~L~l~~~~lp~~i~~~~~~~- 145 (341)
..+|+.|+++ +.+..- ...++..+++|++|+|++|.+.... ..+ ...++|++|+++++.+.. .+
T Consensus 100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~-------~~~ 172 (372)
T 3un9_A 100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTA-------AGV 172 (372)
T ss_dssp SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHH-------HHH
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCCh-------HHH
Confidence 3689999998 455421 2233356778999999999775432 222 246789999999843321 00
Q ss_pred CcchhhhhCCCCCCceEEEEeecch--hhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccC-----c-ccccccCCccEEE
Q 044597 146 CCSTEEILGRLPNLQNLRIWGDLSY--YQSLLSKSLCRLSCLESLKLANESKMPRRSNTI-----L-AEYQFPPSLTHLS 217 (341)
Q Consensus 146 ~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~l-----p-~~~~lp~~L~~L~ 217 (341)
.. +..++..+++|++|++++|... ....++..+...++|+.|++++| .++.. + .+... ++|++|+
T Consensus 173 ~~-l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-----~i~~~g~~~l~~~L~~~-~~L~~L~ 245 (372)
T 3un9_A 173 AV-LMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-----GAGDTAALALARAAREH-PSLELLH 245 (372)
T ss_dssp HH-HHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-----CCCHHHHHHHHHHHHHC-SSCCEEE
T ss_pred HH-HHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-----CCCHHHHHHHHHHHHhC-CCCCEEe
Confidence 11 2222678999999999998733 24466778888999999999998 66543 2 33456 7899999
Q ss_pred EEeecCCCCCCccCc
Q 044597 218 FSNIELIDDPMPALE 232 (341)
Q Consensus 218 l~~~~l~~~~~~~l~ 232 (341)
+++|.++......+.
T Consensus 246 Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 246 LYFNELSSEGRQVLR 260 (372)
T ss_dssp CTTSSCCHHHHHHHH
T ss_pred ccCCCCCHHHHHHHH
Confidence 999997655444443
No 149
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.95 E-value=2.9e-06 Score=67.98 Aligned_cols=83 Identities=11% Similarity=0.128 Sum_probs=47.2
Q ss_pred CccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeCcEeeecCCCCCcccEEEEecCCCCCceeec-CCC----CCcccEE
Q 044597 212 SLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMG-IKA----MPKLECV 286 (341)
Q Consensus 212 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~----l~~L~~L 286 (341)
.|+.|++++|.++...+..+.. +++|++|++++|..+++.... ++. .++|++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~----------------------~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L 119 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEG----------------------LQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEM 119 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTT----------------------CSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEE
T ss_pred eEeEEeCcCCCccHHHHHHhcC----------------------CCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEE
Confidence 6788888887765555444444 455555555555555443211 111 2457777
Q ss_pred EEecCCCCCccc-cccCCCCCCcEEEEecCC
Q 044597 287 IINPCAHLKRIP-EQLWCLKSLNKLELWWPE 316 (341)
Q Consensus 287 ~l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~ 316 (341)
++++|++++.-. ..+.++++|++|++++|+
T Consensus 120 ~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 120 EIISCGNVTDKGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp EEESCTTCCHHHHHHGGGCTTCCEEEEESCT
T ss_pred EcCCCCcCCHHHHHHHhcCCCCCEEECCCCC
Confidence 777776665511 134556777777777776
No 150
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.88 E-value=3.9e-05 Score=70.03 Aligned_cols=144 Identities=17% Similarity=0.158 Sum_probs=86.0
Q ss_pred CCCCCceEEEEeecchhhhHHH-HHhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCCCCccC
Q 044597 155 RLPNLQNLRIWGDLSYYQSLLS-KSLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDDPMPAL 231 (341)
Q Consensus 155 ~l~~L~~L~l~~~~~~~~~~l~-~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l 231 (341)
...+|+.+.+.... ..+. ..+..+..|+.+.+..+ ...++ .+... ..++.+......+ .-..+
T Consensus 228 ~~~~l~~i~ip~~~----~~i~~~~f~~~~~l~~~~~~~~------~~~i~~~~F~~~-~~l~~~~~~~~~i---~~~~F 293 (394)
T 4fs7_A 228 SKTGVKNIIIPDSF----TELGKSVFYGCTDLESISIQNN------KLRIGGSLFYNC-SGLKKVIYGSVIV---PEKTF 293 (394)
T ss_dssp TTCCCCEEEECTTC----CEECSSTTTTCSSCCEEEECCT------TCEECSCTTTTC-TTCCEEEECSSEE---CTTTT
T ss_pred ccCCCceEEECCCc----eecccccccccccceeEEcCCC------cceeeccccccc-cccceeccCceee---ccccc
Confidence 34567777665421 1111 23567788888888653 33343 44455 6777777655443 22356
Q ss_pred cCCCCCCeEEEEEeCcEee-ecCCCCCcccEEEEecCCCCCceeec-CCCCCcccEEEEecCCCCCcccc-ccCCCCCCc
Q 044597 232 EKLPVLQVLKLKYLGRKLA-CSSDGFPKLKVLHLKSMLWLEEWTMG-IKAMPKLECVIINPCAHLKRIPE-QLWCLKSLN 308 (341)
Q Consensus 232 ~~l~~L~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~ 308 (341)
..+.+|+.+.+...-..+. .....+.+|+.+.+.. .++.+... ...+++|+.+.+... ++.++. .+.++++|+
T Consensus 294 ~~~~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~ 369 (394)
T 4fs7_A 294 YGCSSLTEVKLLDSVKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLK 369 (394)
T ss_dssp TTCTTCCEEEECTTCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCC
T ss_pred cccccccccccccccceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCC
Confidence 7788888888721111121 2234677888888853 45565433 234678888888543 666654 467789999
Q ss_pred EEEEecCC
Q 044597 309 KLELWWPE 316 (341)
Q Consensus 309 ~L~l~~~~ 316 (341)
.+.+...-
T Consensus 370 ~i~lp~~~ 377 (394)
T 4fs7_A 370 KVELPKRL 377 (394)
T ss_dssp EEEEEGGG
T ss_pred EEEECCCC
Confidence 99886543
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.87 E-value=7.4e-05 Score=68.18 Aligned_cols=231 Identities=12% Similarity=0.092 Sum_probs=127.2
Q ss_pred cccCCcceeeeeccCCCCcccChhhhhcCCCccEEecCCccccccc-hhhcccccCceeeecC--cCCCCCC------ce
Q 044597 70 PIMDQEVRLRENSIIPSLKSLPSSFLSSLLNLYTLEMPFSYIDHTA-DEFWKMSKLRYLNFGA--ITLPAHP------GK 140 (341)
Q Consensus 70 ~~~~~l~~Lr~L~l~~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp-~~i~~L~~L~~L~l~~--~~lp~~i------~~ 140 (341)
..+..+.+|+.+.+.++++.+++..|.++.+|+.+++..+ +..++ ..+..+.+|+.+.+.. ..+.... ..
T Consensus 65 ~AF~~c~~L~~i~lp~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~ 143 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPSTVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKE 143 (394)
T ss_dssp TTTTTCTTEEEEECCTTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSE
T ss_pred HHhhCCCCceEEEeCCCccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccc
Confidence 3567788899999877899998888899999999999765 44453 3567777777766543 1111110 11
Q ss_pred EEeCC---CcchhhhhCCCCCCceEEEEeecchhhhHHH-HHhcCCCCCCEEEEEeCCC-CCC-----------------
Q 044597 141 YSLHP---CCSTEEILGRLPNLQNLRIWGDLSYYQSLLS-KSLCRLSCLESLKLANESK-MPR----------------- 198 (341)
Q Consensus 141 ~~~~~---~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~-~~l~~l~~L~~L~l~~~~e-~~~----------------- 198 (341)
..... .. ...++..+++|+.+.+.... ..+. ..+.++.+|+.+.+..+.. +..
T Consensus 144 ~~~~~~~~~i-~~~aF~~c~~L~~i~l~~~~----~~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i~~~~~ 218 (394)
T 4fs7_A 144 ITIPEGVTVI-GDEAFATCESLEYVSLPDSM----ETLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLENMEFPNS 218 (394)
T ss_dssp EECCTTCCEE-CTTTTTTCTTCCEEECCTTC----CEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBCCCCTT
T ss_pred cccCcccccc-chhhhcccCCCcEEecCCcc----ceeccccccCCCCceEEEcCCCceEeCchhhccccccceeecCCC
Confidence 11111 11 11126667777777665321 1111 1244455555554433110 000
Q ss_pred ---------------------CCccCc--ccccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeCcEe-eecCC
Q 044597 199 ---------------------RSNTIL--AEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLGRKL-ACSSD 254 (341)
Q Consensus 199 ---------------------~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~ 254 (341)
....+. .+... ..++.+.+..+. .......+...+.++..... .... .....
T Consensus 219 ~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~-~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~--~~~i~~~~F~ 294 (394)
T 4fs7_A 219 LYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGC-TDLESISIQNNK-LRIGGSLFYNCSGLKKVIYG--SVIVPEKTFY 294 (394)
T ss_dssp CCEECTTTTTTCCCCEEEECTTCCEECSSTTTTC-SSCCEEEECCTT-CEECSCTTTTCTTCCEEEEC--SSEECTTTTT
T ss_pred ceEeehhhcccCCCceEEECCCceeccccccccc-ccceeEEcCCCc-ceeeccccccccccceeccC--ceeecccccc
Confidence 111111 11223 455555555443 22233456667777777651 1111 12234
Q ss_pred CCCcccEEEEecCCCCCceeec-CCCCCcccEEEEecCCCCCcccc-ccCCCCCCcEEEEec
Q 044597 255 GFPKLKVLHLKSMLWLEEWTMG-IKAMPKLECVIINPCAHLKRIPE-QLWCLKSLNKLELWW 314 (341)
Q Consensus 255 ~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~ 314 (341)
.+.+|+.+.+.+ .++.+... ...+++|+.+.+.+ .++.++. .+.++++|+.+.+..
T Consensus 295 ~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~ 352 (394)
T 4fs7_A 295 GCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL 352 (394)
T ss_dssp TCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT
T ss_pred cccccccccccc--ccceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc
Confidence 678899998864 46666533 23567899998853 3666654 456788999888754
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.68 E-value=5.6e-05 Score=60.45 Aligned_cols=42 Identities=12% Similarity=0.108 Sum_probs=23.8
Q ss_pred ccChhhhhcCCCccEEecCCcccccc-chhhcccccCceeeecC
Q 044597 89 SLPSSFLSSLLNLYTLEMPFSYIDHT-ADEFWKMSKLRYLNFGA 131 (341)
Q Consensus 89 ~lp~~if~~L~~L~~L~Ls~~~~~~l-p~~i~~L~~L~~L~l~~ 131 (341)
.+|... ..-.+|+.||+++|.+... -..+..+++|++|+|++
T Consensus 52 ~LP~~~-~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~ 94 (176)
T 3e4g_A 52 HLPTGP-LDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCK 94 (176)
T ss_dssp GSCCCS-TTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEES
T ss_pred cCCccc-CCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCC
Confidence 445433 2334688999998865432 12345556666666654
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.57 E-value=1.4e-05 Score=64.95 Aligned_cols=37 Identities=16% Similarity=0.101 Sum_probs=17.0
Q ss_pred CCCCCCceEEEEeecc--hhhhHHHHHhcCCCCCCEEEE
Q 044597 154 GRLPNLQNLRIWGDLS--YYQSLLSKSLCRLSCLESLKL 190 (341)
Q Consensus 154 ~~l~~L~~L~l~~~~~--~~~~~l~~~l~~l~~L~~L~l 190 (341)
...++|++|++++|.. .....+...+...++|+.|++
T Consensus 90 ~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 90 KVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRI 128 (185)
T ss_dssp HHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEEC
T ss_pred HhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEe
Confidence 3334455555554441 122334444555555555555
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.43 E-value=3.7e-05 Score=62.40 Aligned_cols=114 Identities=13% Similarity=0.077 Sum_probs=79.8
Q ss_pred ccCCcceeeeeccC-C-CCc-----ccChhhhhcCCCccEEecCCccccc-----cchhhcccccCceeeecCcCCCCCC
Q 044597 71 IMDQEVRLRENSII-P-SLK-----SLPSSFLSSLLNLYTLEMPFSYIDH-----TADEFWKMSKLRYLNFGAITLPAHP 138 (341)
Q Consensus 71 ~~~~l~~Lr~L~l~-~-~~~-----~lp~~if~~L~~L~~L~Ls~~~~~~-----lp~~i~~L~~L~~L~l~~~~lp~~i 138 (341)
.+.....|+.|+++ + .+. .+...+ ...++|++|+|++|.+.. +...+...++|++|+|+++.+-.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L-~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~-- 107 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEAL-KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG-- 107 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHH-TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH--
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHH-HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH--
Confidence 44556788889887 3 443 355566 788999999999997653 45556677899999999844321
Q ss_pred ceEEeCC-CcchhhhhCCCCCCceEEE--Eeecc--hhhhHHHHHhcCCCCCCEEEEEeC
Q 044597 139 GKYSLHP-CCSTEEILGRLPNLQNLRI--WGDLS--YYQSLLSKSLCRLSCLESLKLANE 193 (341)
Q Consensus 139 ~~~~~~~-~~~~~~~l~~l~~L~~L~l--~~~~~--~~~~~l~~~l~~l~~L~~L~l~~~ 193 (341)
.+ .. +.+++...++|++|++ .++.. .....+...+...+.|+.|++++|
T Consensus 108 -----~g~~~-l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 108 -----SGILA-LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp -----HHHHH-HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred -----HHHHH-HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 00 11 2233777889999999 66652 234456677778889999999886
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.43 E-value=0.00011 Score=63.15 Aligned_cols=81 Identities=20% Similarity=0.250 Sum_probs=53.6
Q ss_pred hcCCCccEEecCCcccccc---chhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCC--CCceEEEEeecch
Q 044597 96 SSLLNLYTLEMPFSYIDHT---ADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLP--NLQNLRIWGDLSY 170 (341)
Q Consensus 96 ~~L~~L~~L~Ls~~~~~~l---p~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~ 170 (341)
.++++|++|+|++|.+..+ |..+..+++|++|+|+++.+.. ..+ +..++ +|++|++.+|...
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~------------~~~-l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS------------ERE-LDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS------------GGG-GGGGTTSCCSEEECTTSTTG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC------------chh-hhhcccCCcceEEccCCcCc
Confidence 5688899999999976654 4567789999999998855532 223 33333 8888888887521
Q ss_pred h-----hhHHHHHhcCCCCCCEEE
Q 044597 171 Y-----QSLLSKSLCRLSCLESLK 189 (341)
Q Consensus 171 ~-----~~~l~~~l~~l~~L~~L~ 189 (341)
. .......+..+++|+.|+
T Consensus 234 ~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 234 DTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GGCSSHHHHHHHHHHHCTTCCEES
T ss_pred cccCcchhHHHHHHHHCcccCeEC
Confidence 1 112224466777887774
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.36 E-value=0.0027 Score=57.68 Aligned_cols=101 Identities=18% Similarity=0.198 Sum_probs=60.0
Q ss_pred CCccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeCcEee-ecCCCCCcccEEEEecCCCCCceeec-CCCCCcccEEEE
Q 044597 211 PSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLGRKLA-CSSDGFPKLKVLHLKSMLWLEEWTMG-IKAMPKLECVII 288 (341)
Q Consensus 211 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l 288 (341)
.+|+.+.+.++. ....-.++..++.|+.+.+...-..+. ....++.+|+++.+.. .++.+... ...+.+|+.+.+
T Consensus 265 ~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~i 341 (394)
T 4gt6_A 265 AYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAI 341 (394)
T ss_dssp SSCCEEECCTTC-CEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEE
T ss_pred ccccEEeccccc-ceecCcccccccccccccCCCcccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEE
Confidence 456666654433 222334566677777776621111111 2234567788888763 35555433 234678999888
Q ss_pred ecCCCCCcccc-ccCCCCCCcEEEEecCC
Q 044597 289 NPCAHLKRIPE-QLWCLKSLNKLELWWPE 316 (341)
Q Consensus 289 ~~c~~l~~lp~-~l~~l~~L~~L~l~~~~ 316 (341)
-. .++.++. .+.++++|+.+++.+..
T Consensus 342 p~--sv~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 342 PS--SVTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp CT--TCCBCCGGGGTTCTTCCEEEESSCH
T ss_pred Cc--ccCEEhHhHhhCCCCCCEEEECCce
Confidence 53 3666654 56789999999998875
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.96 E-value=0.0045 Score=55.80 Aligned_cols=102 Identities=16% Similarity=0.150 Sum_probs=53.3
Q ss_pred ccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeCcEee-ecCCCCCcccEEEEecCCCCCceeec-CCCCCccc
Q 044597 207 YQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLGRKLA-CSSDGFPKLKVLHLKSMLWLEEWTMG-IKAMPKLE 284 (341)
Q Consensus 207 ~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~ 284 (341)
... .+|+.+.+..+ +......++..+.+|+.+.+...-..+. .....+++|+.+.+.+ ..++.+... ...+++|+
T Consensus 237 ~~~-~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~-~~i~~I~~~aF~~c~~L~ 313 (379)
T 4h09_A 237 YGM-KALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDN-SAIETLEPRVFMDCVKLS 313 (379)
T ss_dssp TTC-SSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEECC-TTCCEECTTTTTTCTTCC
T ss_pred cCC-ccceEEEcCCC-ccEeCccccceeehhccccccccceeccccccccccccccccccc-cccceehhhhhcCCCCCC
Confidence 344 56666666544 2233334566667777776611111111 2234567777777764 234555432 22456677
Q ss_pred EEEEecCCCCCcccc-ccCCCCCCcEEEEe
Q 044597 285 CVIINPCAHLKRIPE-QLWCLKSLNKLELW 313 (341)
Q Consensus 285 ~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~ 313 (341)
.+.+-. .++.++. .+.++++|+.+.+-
T Consensus 314 ~i~lp~--~l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 314 SVTLPT--ALKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp EEECCT--TCCEECTTTTTTCTTCCCCCCC
T ss_pred EEEcCc--cccEEHHHHhhCCCCCCEEEEC
Confidence 777643 2555543 34566777766653
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.87 E-value=9.6e-05 Score=63.44 Aligned_cols=13 Identities=46% Similarity=0.634 Sum_probs=6.2
Q ss_pred CCccEEEEEeecC
Q 044597 211 PSLTHLSFSNIEL 223 (341)
Q Consensus 211 ~~L~~L~l~~~~l 223 (341)
++|+.|+|++|.+
T Consensus 196 ~~L~~L~Ls~N~i 208 (267)
T 3rw6_A 196 PNLKILNLSGNEL 208 (267)
T ss_dssp TTCCEEECTTSCC
T ss_pred CCCCEEECCCCcc
Confidence 4444444444444
No 159
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.45 E-value=0.0012 Score=62.98 Aligned_cols=54 Identities=24% Similarity=0.244 Sum_probs=39.9
Q ss_pred HHHHHHc--CCCCCC-----cHHHHHHHHHHHHHCCCcccccCCCCCcceecccCCcchhhHHhh
Q 044597 3 YQLWIAE--GFIPDN-----NEAITEKYLEQLINGAFVDAGKRSDISRINTSSIPGSCSPALLTV 60 (341)
Q Consensus 3 i~~Wiae--G~i~~~-----~e~~g~~~l~eL~~~~~lq~~~~~~~~~i~~~~~~~~~~~~~~~~ 60 (341)
|+.|+|+ ||+.+. .+++|+ ||++|++++|++.+..+ +...+.||+..+.....+
T Consensus 407 i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~ 467 (549)
T 2a5y_B 407 VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHV 467 (549)
T ss_dssp HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTT
T ss_pred eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHH
Confidence 6899999 999764 478888 99999999999987654 345678998888777654
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.11 E-value=0.0081 Score=54.49 Aligned_cols=44 Identities=18% Similarity=0.294 Sum_probs=19.1
Q ss_pred CcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeec
Q 044597 87 LKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFG 130 (341)
Q Consensus 87 ~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~ 130 (341)
+..+....|..+.+|+.+.+..+...--...+.++.+|+.+.+.
T Consensus 253 v~~i~~~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~ 296 (394)
T 4gt6_A 253 VARIETHAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS 296 (394)
T ss_dssp EEEECTTTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred ceEcccceeeecccccEEecccccceecCcccccccccccccCC
Confidence 33343444455555555555443211112234445555555443
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.18 E-value=0.046 Score=49.06 Aligned_cols=102 Identities=12% Similarity=0.093 Sum_probs=56.1
Q ss_pred hCCCCCCceEEEEeecchhhhHHH-HHhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCCCCc
Q 044597 153 LGRLPNLQNLRIWGDLSYYQSLLS-KSLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDDPMP 229 (341)
Q Consensus 153 l~~l~~L~~L~l~~~~~~~~~~l~-~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~~ 229 (341)
+..+.+|+.+.+...- ..+. ..+.++.+|+.+.+.. .+..++ .+... .+|+.+.+.++.+......
T Consensus 236 f~~~~~L~~i~lp~~v----~~I~~~aF~~~~~l~~i~l~~------~i~~i~~~aF~~c-~~L~~i~l~~~~i~~I~~~ 304 (379)
T 4h09_A 236 FYGMKALDEIAIPKNV----TSIGSFLLQNCTALKTLNFYA------KVKTVPYLLCSGC-SNLTKVVMDNSAIETLEPR 304 (379)
T ss_dssp TTTCSSCCEEEECTTC----CEECTTTTTTCTTCCEEEECC------CCSEECTTTTTTC-TTCCEEEECCTTCCEECTT
T ss_pred ccCCccceEEEcCCCc----cEeCccccceeehhccccccc------cceeccccccccc-cccccccccccccceehhh
Confidence 5566666666664321 1111 2355667777777754 445555 45566 7788888877665444455
Q ss_pred cCcCCCCCCeEEEEEeCcEee-ecCCCCCcccEEEEe
Q 044597 230 ALEKLPVLQVLKLKYLGRKLA-CSSDGFPKLKVLHLK 265 (341)
Q Consensus 230 ~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~L~~L~l~ 265 (341)
+|..+.+|+.+.+...-..+. .....+.+|+++.+.
T Consensus 305 aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 305 VFMDCVKLSSVTLPTALKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TTTTCTTCCEEECCTTCCEECTTTTTTCTTCCCCCCC
T ss_pred hhcCCCCCCEEEcCccccEEHHHHhhCCCCCCEEEEC
Confidence 677778888877711111111 123345556665553
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.99 E-value=0.062 Score=40.38 Aligned_cols=43 Identities=23% Similarity=0.328 Sum_probs=26.7
Q ss_pred CCc--ccChhhhhcCCCccEEecCCccccccchh-hcccccCceeeecC
Q 044597 86 SLK--SLPSSFLSSLLNLYTLEMPFSYIDHTADE-FWKMSKLRYLNFGA 131 (341)
Q Consensus 86 ~~~--~lp~~if~~L~~L~~L~Ls~~~~~~lp~~-i~~L~~L~~L~l~~ 131 (341)
+++ .+|..+ -.+|++|+|++|.+..+|.. +..+++|++|+|.+
T Consensus 19 ~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 64 (130)
T 3rfe_A 19 GLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGA 64 (130)
T ss_dssp CCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCS
T ss_pred CCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecC
Confidence 555 666544 23567777777777777653 45566666666665
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.52 E-value=0.09 Score=39.48 Aligned_cols=36 Identities=25% Similarity=0.268 Sum_probs=31.9
Q ss_pred ceeeeeccC-CCCcccChhhhhcCCCccEEecCCccc
Q 044597 76 VRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYI 111 (341)
Q Consensus 76 ~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~ 111 (341)
..++.|+++ +.+..+|..+|..+++|++|+|++|.+
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 358899998 699999999989999999999999943
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=87.97 E-value=0.22 Score=40.21 Aligned_cols=109 Identities=11% Similarity=0.018 Sum_probs=52.4
Q ss_pred cceeeeeccCC--CCc-----ccChhhhhcCCCccEEecCCcccc-----ccchhhcccccCceeeecCcCCCCCCceEE
Q 044597 75 EVRLRENSIIP--SLK-----SLPSSFLSSLLNLYTLEMPFSYID-----HTADEFWKMSKLRYLNFGAITLPAHPGKYS 142 (341)
Q Consensus 75 l~~Lr~L~l~~--~~~-----~lp~~if~~L~~L~~L~Ls~~~~~-----~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~ 142 (341)
-..|+.|+++. .+. .+-+.+ ..-+.|+.|+|++|.+. .+-..+..-+.|++|+|+++.+-+
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL-~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~------ 112 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAA-CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP------ 112 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHH-TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH------
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHH-hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH------
Confidence 34556666642 221 233444 55666777777777554 233334445566677666622210
Q ss_pred eCC-CcchhhhhCCCCCCceEEEEeecc-----hhhhHHHHHhcCCCCCCEEEEEe
Q 044597 143 LHP-CCSTEEILGRLPNLQNLRIWGDLS-----YYQSLLSKSLCRLSCLESLKLAN 192 (341)
Q Consensus 143 ~~~-~~~~~~~l~~l~~L~~L~l~~~~~-----~~~~~l~~~l~~l~~L~~L~l~~ 192 (341)
.+ .. +.+++..-+.|++|++.++.. .....+...+..-+.|+.|+++.
T Consensus 113 -~Ga~a-la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 113 -ELLAR-LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF 166 (197)
T ss_dssp -HHHHH-HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred -HHHHH-HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccC
Confidence 00 11 222244445566666654311 11223444455555666666554
No 165
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=86.44 E-value=0.39 Score=38.76 Aligned_cols=89 Identities=10% Similarity=0.100 Sum_probs=53.7
Q ss_pred hcCCCccEEecCCc-ccc-----ccchhhcccccCceeeecCcCCCCCCceEEeCC-CcchhhhhCCCCCCceEEEEeec
Q 044597 96 SSLLNLYTLEMPFS-YID-----HTADEFWKMSKLRYLNFGAITLPAHPGKYSLHP-CCSTEEILGRLPNLQNLRIWGDL 168 (341)
Q Consensus 96 ~~L~~L~~L~Ls~~-~~~-----~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~-~~~~~~~l~~l~~L~~L~l~~~~ 168 (341)
.+-+.|+.|+|+++ .|. .+-..+..-+.|+.|+|+++.+-+ .+ .. +.+++..-+.|++|+++.|.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd-------~ga~a-lA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISD-------SEARG-LIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBH-------HHHTT-HHHHHHHCSSCCEEECCSSB
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCCh-------HHHHH-HHHHHhcCCccCeEecCCCc
Confidence 55678999999885 554 244455666778888887732210 00 11 22235555677777777776
Q ss_pred c--hhhhHHHHHhcCCCCCCEEEEEe
Q 044597 169 S--YYQSLLSKSLCRLSCLESLKLAN 192 (341)
Q Consensus 169 ~--~~~~~l~~~l~~l~~L~~L~l~~ 192 (341)
. .....+...+..-+.|+.|++++
T Consensus 110 Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 110 LTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp CCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred CCHHHHHHHHHHHhhCCceeEEECCC
Confidence 2 23455556666666777777764
No 166
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=60.70 E-value=5.7 Score=40.66 Aligned_cols=29 Identities=14% Similarity=0.187 Sum_probs=24.7
Q ss_pred hHHHHHHcCCCCCCcHHHHHHHHHHHHHCCCcccc
Q 044597 2 LYQLWIAEGFIPDNNEAITEKYLEQLINGAFVDAG 36 (341)
Q Consensus 2 Li~~WiaeG~i~~~~e~~g~~~l~eL~~~~~lq~~ 36 (341)
++.+|+++| ++.|++++++|++++|++..
T Consensus 392 La~LW~aeG------eedAe~~L~eLvdRSLLq~d 420 (1221)
T 1vt4_I 392 LSLIWFDVI------KSDVMVVVNKLHKYSLVEKQ 420 (1221)
T ss_dssp HHHHHCSSC------SHHHHHHHHHHHTSSSSSBC
T ss_pred HHHHhcCCC------HHHHHHHHHHHHhhCCEEEe
Confidence 678999998 23489999999999999974
No 167
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=42.04 E-value=17 Score=37.48 Aligned_cols=44 Identities=16% Similarity=0.217 Sum_probs=30.8
Q ss_pred hHHHHHHcCCCCCCcHHHHHHHHHHHHHCCCcccccCCCCCcceecccCCcchh
Q 044597 2 LYQLWIAEGFIPDNNEAITEKYLEQLINGAFVDAGKRSDISRINTSSIPGSCSP 55 (341)
Q Consensus 2 Li~~WiaeG~i~~~~e~~g~~~l~eL~~~~~lq~~~~~~~~~i~~~~~~~~~~~ 55 (341)
++.+|.++ ++.+++++++|++++|++.... ++....+||+..+.
T Consensus 400 ~~~~~~~~-------~~~~~~~l~~L~~~sl~~~~~~---~~~~~~~~h~l~~~ 443 (1249)
T 3sfz_A 400 LCVLWDLE-------TEEVEDILQEFVNKSLLFCNRN---GKSFCYYLHDLQVD 443 (1249)
T ss_dssp HHHHHTCC-------HHHHHHHHHHHHHTTSCEEEES---SSSEEEECCHHHHH
T ss_pred HHHHhCCC-------HHHHHHHHHHHHhccceEEecC---CCceEEEecHHHHH
Confidence 56677554 5678999999999999996643 33345667765443
No 168
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=34.66 E-value=23 Score=24.72 Aligned_cols=45 Identities=11% Similarity=0.097 Sum_probs=22.0
Q ss_pred CCcccChhhhhcCCCccEEecCCcccccc-chhhcccccCceeeecC
Q 044597 86 SLKSLPSSFLSSLLNLYTLEMPFSYIDHT-ADEFWKMSKLRYLNFGA 131 (341)
Q Consensus 86 ~~~~lp~~if~~L~~L~~L~Ls~~~~~~l-p~~i~~L~~L~~L~l~~ 131 (341)
.++.+.++.|..+.+|+.+.+..+ +..+ ...|..+.+|+.+.+..
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 344455555555555555555444 1111 12355555555555554
No 169
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=31.96 E-value=38 Score=23.53 Aligned_cols=40 Identities=18% Similarity=0.227 Sum_probs=33.0
Q ss_pred cccCCcceeeeeccCCCCcccChhhhhcCCCccEEecCCc
Q 044597 70 PIMDQEVRLRENSIIPSLKSLPSSFLSSLLNLYTLEMPFS 109 (341)
Q Consensus 70 ~~~~~l~~Lr~L~l~~~~~~lp~~if~~L~~L~~L~Ls~~ 109 (341)
..|..+..|+.+.+..+++.+-...|.++.+|+.+.+.+.
T Consensus 14 ~aF~~c~~L~~i~iP~~v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPNIGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CTTTTCTTCCCEEECTTSSCCCTTSSTTCTTCCCEEECCS
T ss_pred HHhcCCCCCcEEEcCCchheEcHHHHhccCCccEEEEcCC
Confidence 3567788888888877888888888889999999888765
No 170
>1uhw_A Pleckstrin; three-helix bundle, beta-ARM, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31 PDB: 1w4m_A
Probab=24.44 E-value=42 Score=23.90 Aligned_cols=35 Identities=6% Similarity=0.214 Sum_probs=26.6
Q ss_pred hHHHHHHcCCCCCCcHHHHHHHHHHHHHCCCcccccC
Q 044597 2 LYQLWIAEGFIPDNNEAITEKYLEQLINGAFVDAGKR 38 (341)
Q Consensus 2 Li~~WiaeG~i~~~~e~~g~~~l~eL~~~~~lq~~~~ 38 (341)
||.+=|..|.+..+.| |..|-..|++.++++++..
T Consensus 43 lVdWLi~~~~~~~R~E--Av~lgq~Ll~~G~i~hV~d 77 (109)
T 1uhw_A 43 VIDWLVSNKLVRNRQE--GLMISASLLSEGYLQPAGD 77 (109)
T ss_dssp HHHHHHHHTSSSSHHH--HHHHHHHHHHHTSSEECSS
T ss_pred HHHHHHHcCCCCCHHH--HHHHHHHHHHCCeEEeCcc
Confidence 5666666666665555 8889999999999998854
No 171
>2cso_A Pleckstrin; DEP domain, platelet P47 protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.31
Probab=20.57 E-value=54 Score=24.03 Aligned_cols=34 Identities=9% Similarity=0.217 Sum_probs=25.3
Q ss_pred hHHHHHHcCCCCCCcHHHHHHHHHHHHHCCCccccc
Q 044597 2 LYQLWIAEGFIPDNNEAITEKYLEQLINGAFVDAGK 37 (341)
Q Consensus 2 Li~~WiaeG~i~~~~e~~g~~~l~eL~~~~~lq~~~ 37 (341)
+|.|=+..|.+..+.| |..|=..|++.++++++.
T Consensus 53 lVdWLl~~~~~~sR~E--Av~lg~~Ll~~G~i~hV~ 86 (127)
T 2cso_A 53 VIDWLVSNQSVRNRQE--GLMIASSLLNEGYLQPAG 86 (127)
T ss_dssp HHHHHHHTTSCSSHHH--HHHHHHHHHHHTSSEEES
T ss_pred HHHHHHHcCCCCCHHH--HHHHHHHHHHCCeEEeCc
Confidence 5555555565565555 788999999999999983
Done!