BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044598
(110 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 224 bits (572), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 106/107 (99%), Positives = 107/107 (100%)
Query: 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60
IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA
Sbjct: 77 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 136
Query: 61 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 107
MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA+K
Sbjct: 137 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 183
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 199 bits (507), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 94/107 (87%), Positives = 101/107 (94%)
Query: 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60
IRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANKQDLPNA
Sbjct: 74 IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 133
Query: 61 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 107
MNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN + N+
Sbjct: 134 MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 199 bits (506), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 94/107 (87%), Positives = 101/107 (94%)
Query: 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60
IRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANKQDLPNA
Sbjct: 73 IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 132
Query: 61 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 107
MNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN + N+
Sbjct: 133 MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 179
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 199 bits (505), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 94/107 (87%), Positives = 101/107 (94%)
Query: 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60
IRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANKQDLPNA
Sbjct: 59 IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 118
Query: 61 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 107
MNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN + N+
Sbjct: 119 MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 165
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 199 bits (505), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 94/107 (87%), Positives = 101/107 (94%)
Query: 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60
IRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANKQDLPNA
Sbjct: 57 IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116
Query: 61 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 107
MNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN + N+
Sbjct: 117 MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 163
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 198 bits (504), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 94/107 (87%), Positives = 101/107 (94%)
Query: 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60
IRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANKQDLPNA
Sbjct: 222 IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 281
Query: 61 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 107
MNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN + N+
Sbjct: 282 MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 328
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 180 bits (457), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 81/107 (75%), Positives = 97/107 (90%)
Query: 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60
IR LWRHY++NT+G+IFV+DSNDR R+ EAR+ + RMLNEDELR+AV LVFANKQDLP A
Sbjct: 74 IRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDLPEA 133
Query: 61 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 107
M+AAEIT+KLGLHS+R R W+IQSTCATSGEGLYEGL+WLSNN+ N+
Sbjct: 134 MSAAEITEKLGLHSIRNRPWFIQSTCATSGEGLYEGLEWLSNNLKNQ 180
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 178 bits (452), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 80/107 (74%), Positives = 93/107 (86%)
Query: 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60
IRPLWRHYFQNTQGLIFVVDSNDR+RV E+ DEL +ML EDELRDAVLLVFANKQD+PNA
Sbjct: 86 IRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA 145
Query: 61 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 107
M +E+TDKLGL LR R WY+Q+TCAT G GLY+GLDWLS+ ++ +
Sbjct: 146 MPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 192
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 177 bits (450), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 80/107 (74%), Positives = 92/107 (85%)
Query: 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60
IRPLW+HYFQNTQGLIFVVDSNDR+R+ E DEL +ML DELRDAVLL+FANKQDLPNA
Sbjct: 74 IRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPNA 133
Query: 61 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 107
M +E+TDKLGL SLR R WY+Q+TCAT G GLYEGLDWLSN ++ +
Sbjct: 134 MAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 180
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 176 bits (446), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 79/108 (73%), Positives = 95/108 (87%)
Query: 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60
IR LWRHY++NT+G+IFVVDSNDR R+ EAR+ + RMLNEDELR+A LVFANKQDLP A
Sbjct: 74 IRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEA 133
Query: 61 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKV 108
M+AAEIT+KLGLHS+R R W+IQ+TCATSGEGLYEGL+WLSN++ N
Sbjct: 134 MSAAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSNSLKNST 181
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 176 bits (445), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 79/108 (73%), Positives = 95/108 (87%)
Query: 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60
IR LWRHY++NT+G+IFVVDSNDR R+ EAR+ + RMLNEDELR+A LVFANKQDLP A
Sbjct: 57 IRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEA 116
Query: 61 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKV 108
M+AAEIT+KLGLHS+R R W+IQ+TCATSGEGLYEGL+WLSN++ N
Sbjct: 117 MSAAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSNSLKNST 164
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 174 bits (441), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 75/106 (70%), Positives = 98/106 (92%)
Query: 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60
IRPLWRHY+ NT GLIFVVDSNDR+R+ +AR+ELHRM+NE+EL+DA++LVFANKQDLPNA
Sbjct: 74 IRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQDLPNA 133
Query: 61 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 106
M+AAE+T+KL L+++R+R+W+IQSTCAT G+GLYEG DWL+ ++ N
Sbjct: 134 MSAAEVTEKLHLNTIRERNWFIQSTCATRGDGLYEGFDWLTTHLNN 179
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 171 bits (432), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 78/108 (72%), Positives = 92/108 (85%)
Query: 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60
IR LWRHY+ NT+G+IFVVDSNDR R+ EAR+ + RMLNEDEL +A LVFANKQDLP A
Sbjct: 74 IRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAAWLVFANKQDLPEA 133
Query: 61 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKV 108
M+AAEIT+KLGLHS+R R W+IQ+TCATSGEGLYEGL+WLSN + N
Sbjct: 134 MSAAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSNCLKNST 181
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 170 bits (431), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 72/104 (69%), Positives = 94/104 (90%)
Query: 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60
IRPLWRHY+QNTQ +IFVVDSNDRDR+ EAR+EL +MLNEDE+R+A+LLVFANK DLP A
Sbjct: 74 IRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILLVFANKHDLPQA 133
Query: 61 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 104
M+ +E+T+KLGL +++ R WY Q++CAT+G+GLYEGLDWL++N+
Sbjct: 134 MSISEVTEKLGLQTIKNRKWYCQTSCATNGDGLYEGLDWLADNL 177
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 162 bits (409), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 70/109 (64%), Positives = 90/109 (82%)
Query: 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60
IRPLWRHY+ TQGLIFVVD DRDR+ EAR ELHR++N+ E+RDA++L+FANKQDLP+A
Sbjct: 379 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 438
Query: 61 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKVG 109
M EI +KLGL +R R+WY+Q +CATSG+GLYEGL WL++N +K+
Sbjct: 439 MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKSKLA 487
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 160 bits (404), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 69/103 (66%), Positives = 87/103 (84%)
Query: 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60
IRPLWRHY+ TQGLIFVVD DRDR+ EAR ELHR++N+ E+RDA++L+FANKQDLP+A
Sbjct: 70 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 129
Query: 61 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 103
M EI +KLGL +R R+WY+Q +CATSG+GLYEGL WL++N
Sbjct: 130 MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 172
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 159 bits (403), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 69/103 (66%), Positives = 87/103 (84%)
Query: 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60
IRPLWRHY+ TQGLIFVVD DRDR+ EAR ELHR++N+ E+RDA++L+FANKQDLP+A
Sbjct: 69 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 128
Query: 61 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 103
M EI +KLGL +R R+WY+Q +CATSG+GLYEGL WL++N
Sbjct: 129 MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 171
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 159 bits (403), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 69/103 (66%), Positives = 87/103 (84%)
Query: 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60
IRPLWRHY+ TQGLIFVVD DRDR+ EAR ELHR++N+ E+RDA++L+FANKQDLP+A
Sbjct: 70 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 129
Query: 61 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 103
M EI +KLGL +R R+WY+Q +CATSG+GLYEGL WL++N
Sbjct: 130 MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 172
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 159 bits (403), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 69/103 (66%), Positives = 87/103 (84%)
Query: 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60
IRPLWRHY+ TQGLIFVVD DRDR+ EAR ELHR++N+ E+RDA++L+FANKQDLP+A
Sbjct: 59 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 118
Query: 61 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 103
M EI +KLGL +R R+WY+Q +CATSG+GLYEGL WL++N
Sbjct: 119 MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 161
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 159 bits (403), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 69/103 (66%), Positives = 87/103 (84%)
Query: 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60
IRPLWRHY+ TQGLIFVVD DRDR+ EAR ELHR++N+ E+RDA++L+FANKQDLP+A
Sbjct: 60 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 119
Query: 61 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 103
M EI +KLGL +R R+WY+Q +CATSG+GLYEGL WL++N
Sbjct: 120 MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 162
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 159 bits (403), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 69/103 (66%), Positives = 87/103 (84%)
Query: 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60
IRPLWRHY+ TQGLIFVVD DRDR+ EAR ELHR++N+ E+RDA++L+FANKQDLP+A
Sbjct: 57 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 116
Query: 61 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 103
M EI +KLGL +R R+WY+Q +CATSG+GLYEGL WL++N
Sbjct: 117 MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 159
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 159 bits (402), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 69/103 (66%), Positives = 87/103 (84%)
Query: 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60
IRPLWRHY+ TQGLIFVVD DRDR+ EAR ELHR++N+ E+RDA++L+FANKQDLP+A
Sbjct: 57 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 116
Query: 61 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 103
M EI +KLGL +R R+WY+Q +CATSG+GLYEGL WL++N
Sbjct: 117 MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 159
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 155 bits (392), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 68/103 (66%), Positives = 85/103 (82%)
Query: 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60
IRPLWRHY+ TQGLIFVVD DRDR+ EAR ELHR++N+ E RDA++L+FANKQDLP+A
Sbjct: 57 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAIILIFANKQDLPDA 116
Query: 61 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 103
EI +KLGL +R R+WY+Q +CATSG+GLYEGL WL++N
Sbjct: 117 XKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 159
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 124 bits (310), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 57/104 (54%), Positives = 75/104 (72%)
Query: 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60
IRP WR Y+ +T +IFVVDS D+DR+ A ELH ML E+EL+DA LLVFANKQD P A
Sbjct: 75 IRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA 134
Query: 61 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 104
++A+E++ +L L L+ R W I ++ A GEG+ EGLDWL + I
Sbjct: 135 LSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 178
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 120 bits (301), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 53/100 (53%), Positives = 76/100 (76%)
Query: 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60
+RP WR YF +T +I+VVDS DRDR+ A+ EL+ +L+EDELR ++LL+FANKQDLP+A
Sbjct: 79 VRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDA 138
Query: 61 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 100
+ AEI ++LG+ S+ R W I + + +G+GL EG+DWL
Sbjct: 139 ASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWL 178
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 117 bits (292), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 53/106 (50%), Positives = 73/106 (68%)
Query: 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60
IRP WR Y+ NT +I+VVDS DRDR+ ++ EL ML E+ELR A+L+VFANKQD+ A
Sbjct: 61 IRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQA 120
Query: 61 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 106
M ++E+ + LGL +L+ R W I T AT G GL E ++WL + +
Sbjct: 121 MTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 166
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 116 bits (291), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 53/107 (49%), Positives = 73/107 (68%)
Query: 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60
IRP WR Y+ NT +I+VVDS DRDR+ ++ EL ML E+ELR A+L+VFANKQD+ A
Sbjct: 59 IRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQA 118
Query: 61 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 107
M +E+ + LGL +L+ R W I T AT G GL E ++WL + ++
Sbjct: 119 MTPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 165
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 74/105 (70%)
Query: 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60
+R W Y+ NT+ +I VVDS DR+R+ ++EL+RML ++LR A +L+FANKQD+
Sbjct: 73 LRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQDMKGC 132
Query: 61 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 105
M AAEI+ L L S++ W+IQS CA +GEGL +GL+W+++ I
Sbjct: 133 MTAAEISKYLTLSSIKDHPWHIQSCCALTGEGLCQGLEWMTSRIG 177
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 110 bits (275), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 74/108 (68%)
Query: 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60
+R WR+YF++T GLI+VVDS DR R+ + + EL +L E+ L A LL+FANKQDLP A
Sbjct: 75 LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA 134
Query: 61 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKV 108
++ I + L L S+R HW IQ A +GE L G+DWL ++I+++V
Sbjct: 135 LSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSRV 182
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 110 bits (274), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 74/108 (68%)
Query: 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60
+R WR+YF++T GLI+VVDS DR R+ + + EL +L E+ L A LL+FANKQDLP A
Sbjct: 58 LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA 117
Query: 61 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKV 108
++ I + L L S+R HW IQ A +GE L G+DWL ++I+++V
Sbjct: 118 LSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSRV 165
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 109 bits (273), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 74/108 (68%)
Query: 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60
+R WR+YF++T GLI+VVDS DR R+ + + EL +L E+ L A LL+FANKQDLP A
Sbjct: 75 LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA 134
Query: 61 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKV 108
++ I + L L S+R HW IQ A +GE L G+DWL ++I+++V
Sbjct: 135 LSXNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSRV 182
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 109 bits (273), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 51/108 (47%), Positives = 75/108 (69%)
Query: 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60
+R WR+YF++T GLI+VVDS DR R+ + + EL +L E+ L A LL+FANKQDLP A
Sbjct: 73 LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA 132
Query: 61 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKV 108
+++ I + L L S+R HW IQ A +GE L G+DWL ++I++++
Sbjct: 133 LSSNAIREVLELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSRI 180
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 109 bits (273), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 70/100 (70%)
Query: 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60
+R W Y+ NT+ +I VVDS DR+R+ R+EL++ML ++LR A LL+FANKQD+
Sbjct: 79 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 138
Query: 61 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 100
M AEI+ L L S++ W+IQ+ CA +GEGL +GL+W+
Sbjct: 139 MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM 178
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 109 bits (272), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 70/100 (70%)
Query: 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60
+R W Y+ NT+ +I VVDS DR+R+ R+EL++ML ++LR A LL+FANKQD+
Sbjct: 73 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 132
Query: 61 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 100
M AEI+ L L S++ W+IQ+ CA +GEGL +GL+W+
Sbjct: 133 MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM 172
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 109 bits (272), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 70/100 (70%)
Query: 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60
+R W Y+ NT+ +I VVDS DR+R+ R+EL++ML ++LR A LL+FANKQD+
Sbjct: 78 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 137
Query: 61 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 100
M AEI+ L L S++ W+IQ+ CA +GEGL +GL+W+
Sbjct: 138 MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM 177
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 109 bits (272), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 70/100 (70%)
Query: 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60
+R W Y+ NT+ +I VVDS DR+R+ R+EL++ML ++LR A LL+FANKQD+
Sbjct: 73 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 132
Query: 61 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 100
M AEI+ L L S++ W+IQ+ CA +GEGL +GL+W+
Sbjct: 133 MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM 172
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 108 bits (271), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 73/108 (67%)
Query: 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60
+R WR+YF++T GLI+VVDS DR R + + EL +L E+ L A LL+FANKQDLP A
Sbjct: 75 LRSYWRNYFESTDGLIWVVDSADRQRXQDCQRELQSLLVEERLAGATLLIFANKQDLPGA 134
Query: 61 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKV 108
++ I + L L S+R HW IQ A +GE L G+DWL ++I+++V
Sbjct: 135 LSXNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSRV 182
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 97.1 bits (240), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/107 (48%), Positives = 71/107 (66%)
Query: 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60
IRP WR YF+NT LI+V+DS DR R E EL +L E++L +L+FANKQDL A
Sbjct: 74 IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA 133
Query: 61 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 107
A+EI + L LH++R R W IQS A +GEG+ +G++W+ N+ K
Sbjct: 134 APASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 180
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 97.1 bits (240), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/107 (48%), Positives = 71/107 (66%)
Query: 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60
IRP WR YF+NT LI+V+DS DR R E EL +L E++L +L+FANKQDL A
Sbjct: 73 IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA 132
Query: 61 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 107
A+EI + L LH++R R W IQS A +GEG+ +G++W+ N+ K
Sbjct: 133 APASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 179
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/104 (49%), Positives = 70/104 (67%)
Query: 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60
IRP WR YF+NT LI+V+DS DR R E EL +L E++L +L+FANKQDL A
Sbjct: 61 IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA 120
Query: 61 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 104
A+EI + L LH++R R W IQS A +GEG+ +G++W+ N+
Sbjct: 121 APASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 164
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 96.3 bits (238), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/104 (49%), Positives = 70/104 (67%)
Query: 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60
IRP WR YF+NT LI+V+DS DR R E EL +L E++L +L+FANKQDL A
Sbjct: 61 IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA 120
Query: 61 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 104
A+EI + L LH++R R W IQS A +GEG+ +G++W+ N+
Sbjct: 121 APASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 164
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
Length = 171
Score = 95.1 bits (235), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 51/107 (47%), Positives = 69/107 (64%)
Query: 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60
IRP WR Y+ NT +I+VVDS DRDR+ ++ EL L E+ELR A+L+VFANKQD A
Sbjct: 64 IRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAXLEEEELRKAILVVFANKQDXEQA 123
Query: 61 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 107
++E + LGL +L+ R W I T AT G GL E +WL + ++
Sbjct: 124 XTSSEXANSLGLPALKDRKWQIFKTSATKGTGLDEAXEWLVETLKSR 170
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 93.2 bits (230), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 71/105 (67%), Gaps = 2/105 (1%)
Query: 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL--RDAVLLVFANKQDLPN 59
R LW HY++ Q +IFV+DS+DR R+V A++EL +LN ++ R +L FANK DL +
Sbjct: 81 RNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD 140
Query: 60 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 104
A+ + +++ L L +++ + W+I ++ A GEGL EG+DWL + I
Sbjct: 141 AVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQI 185
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 69.3 bits (168), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 59/99 (59%)
Query: 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 61
R +W Y + +++++D+ DR+++ +R+ELH +L++ +L+ +LV NK+DLPNA+
Sbjct: 81 RSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNAL 140
Query: 62 NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 100
+ ++ +K+ L +++ R S + + L WL
Sbjct: 141 DEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 179
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 69.3 bits (168), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 8/117 (6%)
Query: 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-------LLVFAN 53
R LW Y+ N +IFVVDS+D R+ + E+ ML +++R + L FAN
Sbjct: 76 FRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFAN 135
Query: 54 KQDLPNAMNAAEITDKLGLHSLRQRH-WYIQSTCATSGEGLYEGLDWLSNNIANKVG 109
K D A AAE+ + L L +L H + I ++ G G++EG WL + + G
Sbjct: 136 KMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASRQSG 192
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 54/110 (49%), Gaps = 7/110 (6%)
Query: 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 61
R LW+ YF G++F+VD+ D +R EAR EL + N EL+D ++ NK D PNA+
Sbjct: 81 RRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV 140
Query: 62 NAAEITDKLGLHSLR-------QRHWYIQSTCATSGEGLYEGLDWLSNNI 104
+ AE+ LGL + QR + G E WLS I
Sbjct: 141 SEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQYI 190
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 67.8 bits (164), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 53/107 (49%), Gaps = 7/107 (6%)
Query: 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 61
R LW+ YF G++F+VD+ D +R EAR EL + N EL+D ++ NK D PNA+
Sbjct: 59 RRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV 118
Query: 62 NAAEITDKLGLHSLR-------QRHWYIQSTCATSGEGLYEGLDWLS 101
+ AE+ LGL + QR + G E WLS
Sbjct: 119 SEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 165
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 58/99 (58%)
Query: 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 61
R +W Y + ++++VD+ D++++ +++ELH +L++ +L+ +LV NK+DLP A+
Sbjct: 81 RSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL 140
Query: 62 NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 100
+ E+ +K+ L +++ R S + + L WL
Sbjct: 141 DEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 179
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 58/100 (58%)
Query: 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60
R +W Y + ++++VD+ D++++ +++ELH +L++ +L+ +LV NK+DLP A
Sbjct: 89 FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA 148
Query: 61 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 100
++ E+ +K+ L +++ R S + + L WL
Sbjct: 149 LDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 188
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 55.8 bits (133), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 56/115 (48%), Gaps = 12/115 (10%)
Query: 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 61
R +W++Y G++F+VD D +R++E+++EL ++ ++ + + +L+ NK D P A+
Sbjct: 80 RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAI 139
Query: 62 NAAEITDKLGLHS------------LRQRHWYIQSTCATSGEGLYEGLDWLSNNI 104
+ + + GL+ L R + +G EG W++ I
Sbjct: 140 SEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 194
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 55.8 bits (133), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 56/115 (48%), Gaps = 12/115 (10%)
Query: 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 61
R +W++Y G++F+VD D +R++E+++EL ++ ++ + + +L+ NK D P A+
Sbjct: 74 RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAI 133
Query: 62 NAAEITDKLGLHS------------LRQRHWYIQSTCATSGEGLYEGLDWLSNNI 104
+ + + GL+ L R + +G EG W++ I
Sbjct: 134 SEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 188
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 56/115 (48%), Gaps = 12/115 (10%)
Query: 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 61
R +W++Y G++F+VD D +R++E+++EL ++ ++ + + +L+ NK D P A+
Sbjct: 83 RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAI 142
Query: 62 NAAEITDKLGLHS------------LRQRHWYIQSTCATSGEGLYEGLDWLSNNI 104
+ + + GL+ L R + +G EG W++ I
Sbjct: 143 SEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 12/115 (10%)
Query: 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 61
R +W++Y G++F+VD D R+VE++ EL+ ++ ++ + + +L+ NK D +A+
Sbjct: 93 RRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPILILGNKIDRTDAI 152
Query: 62 NAAEITDKLGLHS------------LRQRHWYIQSTCATSGEGLYEGLDWLSNNI 104
+ ++ + GL+ L R + +G EG WLS I
Sbjct: 153 SEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRWLSQYI 207
>pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Alf4 And Gdp
pdb|2ZJZ|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
pdb|2ZJZ|B Chain B, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
Length = 356
Score = 36.2 bits (82), Expect = 0.004, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV----------LLVF 51
R W H F+ +IF V +D D V+ +E++RM +L D++ +++F
Sbjct: 210 RKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILF 269
Query: 52 ANKQDL 57
NK+DL
Sbjct: 270 LNKKDL 275
>pdb|3D7M|A Chain A, Crystal Structure Of The G Protein Fast-Exchange Double
Mutant I56cQ333C
Length = 354
Score = 36.2 bits (82), Expect = 0.004, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV----------LLVF 51
R W H F+ +IF V +D D V+ +E++RM +L D++ +++F
Sbjct: 208 RKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILF 267
Query: 52 ANKQDL 57
NK+DL
Sbjct: 268 LNKKDL 273
>pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif.
pdb|3ONW|B Chain B, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif
Length = 328
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV----------LLVF 51
R W H F+ +IF V +D D V+ +E++RM +L D++ +++F
Sbjct: 182 RKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILF 241
Query: 52 ANKQDL 57
NK+DL
Sbjct: 242 LNKKDL 247
>pdb|3UMR|A Chain A, Crystal Structure Of The G202d Mutant Of Human G-Alpha-I1
Length = 354
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV----------LLVF 51
R W H F+ +IF V +D D V+ +E++RM +L D++ +++F
Sbjct: 208 RKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKCFTDTSIILF 267
Query: 52 ANKQDL 57
NK+DL
Sbjct: 268 LNKKDL 273
>pdb|3FFA|A Chain A, Crystal Structure Of A Fast Activating G Protein Mutant
pdb|3FFB|A Chain A, Gi-Alpha-1 Mutant In Gdp Bound Form
Length = 360
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV----------LLVF 51
R W H F+ +IF V +D D V+ +E++RM +L D++ +++F
Sbjct: 214 RKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILF 273
Query: 52 ANKQDL 57
NK+DL
Sbjct: 274 LNKKDL 279
>pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQJ|D Chain D, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|A Chain A, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|C Chain C, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
Length = 325
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV----------LLVF 51
R W H F+ +IF V +D D V+ +E++RM +L D++ +++F
Sbjct: 179 RKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILF 238
Query: 52 ANKQDL 57
NK+DL
Sbjct: 239 LNKKDL 244
>pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|1KJY|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
Length = 325
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV----------LLVF 51
R W H F+ +IF V +D D V+ +E++RM +L D++ +++F
Sbjct: 179 RKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILF 238
Query: 52 ANKQDL 57
NK+DL
Sbjct: 239 LNKKDL 244
>pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Alf4 And Gdp
pdb|1SVS|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Gppnhp
Length = 353
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV----------LLVF 51
R W H F+ +IF V +D D V+ +E++RM +L D++ +++F
Sbjct: 207 RKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILF 266
Query: 52 ANKQDL 57
NK+DL
Sbjct: 267 LNKKDL 272
>pdb|2IHB|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs10 And Activated Gi Alpha 3
Length = 323
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV----------LLVF 51
R W H F+ +IF V +D D V+ +E++RM +L D++ +++F
Sbjct: 177 RKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTETSIILF 236
Query: 52 ANKQDL 57
NK+DL
Sbjct: 237 LNKKDL 242
>pdb|1Y3A|A Chain A, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|B Chain B, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|C Chain C, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|D Chain D, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
Length = 329
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV----------LLVF 51
R W H F+ +IF V +D D V+ +E++RM +L D++ +++F
Sbjct: 183 RKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILF 242
Query: 52 ANKQDL 57
NK+DL
Sbjct: 243 LNKKDL 248
>pdb|3QE0|A Chain A, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|B Chain B, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|C Chain C, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
Length = 325
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV----------LLVF 51
R W H F+ +IF V +D D V+ +E++RM +L D++ +++F
Sbjct: 179 RKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILF 238
Query: 52 ANKQDL 57
NK+DL
Sbjct: 239 LNKKDL 244
>pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
pdb|2XNS|B Chain B, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
Length = 327
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV----------LLVF 51
R W H F+ +IF V +D D V+ +E++RM +L D++ +++F
Sbjct: 181 RKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILF 240
Query: 52 ANKQDL 57
NK+DL
Sbjct: 241 LNKKDL 246
>pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
pdb|2IK8|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
Length = 324
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV----------LLVF 51
R W H F+ +IF V +D D V+ +E++RM +L D++ +++F
Sbjct: 178 RKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILF 237
Query: 52 ANKQDL 57
NK+DL
Sbjct: 238 LNKKDL 243
>pdb|2G83|A Chain A, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
pdb|2G83|B Chain B, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
Length = 313
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV----------LLVF 51
R W H F+ +IF V +D D V+ +E++RM +L D++ +++F
Sbjct: 176 RKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILF 235
Query: 52 ANKQDL 57
NK+DL
Sbjct: 236 LNKKDL 241
>pdb|4G5Q|A Chain A, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|B Chain B, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|C Chain C, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|D Chain D, Structure Of Lgn Gl4GALPHAI1 COMPLEX
Length = 330
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV----------LLVF 51
R W H F+ +IF V +D D V+ +E++RM +L D++ +++F
Sbjct: 184 RKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILF 243
Query: 52 ANKQDL 57
NK+DL
Sbjct: 244 LNKKDL 249
>pdb|1BH2|A Chain A, A326s Mutant Of An Inhibitory Alpha Subunit
Length = 315
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV----------LLVF 51
R W H F+ +IF V +D D V+ +E++RM +L D++ +++F
Sbjct: 177 RKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILF 236
Query: 52 ANKQDL 57
NK+DL
Sbjct: 237 LNKKDL 242
>pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|B Chain B, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|C Chain C, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|D Chain D, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5S|A Chain A, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|B Chain B, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|C Chain C, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|D Chain D, Structure Of Lgn Gl3GALPHAI3 COMPLEX
Length = 330
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV----------LLVF 51
R W H F+ +IF V +D D V+ +E++RM +L D++ +++F
Sbjct: 184 RKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTETSIILF 243
Query: 52 ANKQDL 57
NK+DL
Sbjct: 244 LNKKDL 249
>pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
pdb|3QI2|B Chain B, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
Length = 328
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV----------LLVF 51
R W H F+ +IF V +D D V+ +E++RM +L D++ +++F
Sbjct: 182 RKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILF 241
Query: 52 ANKQDL 57
NK+DL
Sbjct: 242 LNKKDL 247
>pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
pdb|2GTP|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
Length = 323
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV----------LLVF 51
R W H F+ +IF V +D D V+ +E++RM +L D++ +++F
Sbjct: 177 RKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILF 236
Query: 52 ANKQDL 57
NK+DL
Sbjct: 237 LNKKDL 242
>pdb|1GIL|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV----------LLVF 51
R W H F+ +IF V +D D V+ +E++RM +L D++ +++F
Sbjct: 207 RKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILF 266
Query: 52 ANKQDL 57
NK+DL
Sbjct: 267 LNKKDL 272
>pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|B Chain B, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|C Chain C, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|D Chain D, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
Length = 330
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV----------LLVF 51
R W H F+ +IF V +D D V+ +E++RM +L D++ +++F
Sbjct: 184 RKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTETSIILF 243
Query: 52 ANKQDL 57
NK+DL
Sbjct: 244 LNKKDL 249
>pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1AGR|A Chain A, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1AGR|D Chain D, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1CIP|A Chain A, Gi-Alpha-1 Subunit Of Guanine Nucleotide-Binding Protein
Complexed With A Gtp Analogue
pdb|1BOF|A Chain A, Gi-Alpha-1 Bound To Gdp And Magnesium
pdb|1GDD|A Chain A, Tertiary And Quaternary Structural Changes In Gia1 Induced
By Gtp Hydrolysis
pdb|1GFI|A Chain A, Structures Of Active Conformations Of Gi Alpha 1 And The
Mechanism Of Gtp Hydrolysis
pdb|1GIA|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV----------LLVF 51
R W H F+ +IF V +D D V+ +E++RM +L D++ +++F
Sbjct: 207 RKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILF 266
Query: 52 ANKQDL 57
NK+DL
Sbjct: 267 LNKKDL 272
>pdb|3UMS|A Chain A, Crystal Structure Of The G202a Mutant Of Human G-Alpha-I1
Length = 354
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV----------LLVF 51
R W H F+ +IF V +D D V+ +E++RM +L D++ +++F
Sbjct: 208 RKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILF 267
Query: 52 ANKQDL 57
NK+DL
Sbjct: 268 LNKKDL 273
>pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GIT|A Chain A, Structure Of Gtp-Binding Protein
Length = 353
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV----------LLVF 51
R W H F+ +IF V +D D V+ +E++RM +L D++ +++F
Sbjct: 207 RKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILF 266
Query: 52 ANKQDL 57
NK+DL
Sbjct: 267 LNKKDL 272
>pdb|1AS0|A Chain A, Gtp-Gamma-S Bound G42v Gia1
pdb|1AS2|A Chain A, Gdp+pi Bound G42v Gia1
pdb|1AS3|A Chain A, Gdp Bound G42v Gia1
Length = 353
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV----------LLVF 51
R W H F+ +IF V +D D V+ +E++RM +L D++ +++F
Sbjct: 207 RKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILF 266
Query: 52 ANKQDL 57
NK+DL
Sbjct: 267 LNKKDL 272
>pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2ODE|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2V4Z|A Chain A, The Crystal Structure Of The Human G-Protein Subunit Alpha
( Gnai3) In Complex With An Engineered Regulator Of G-
Protein Signaling Type 2 Domain (Rgs2)
Length = 350
Score = 35.8 bits (81), Expect = 0.006, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV----------LLVF 51
R W H F+ +IF V +D D V+ +E++RM +L D++ +++F
Sbjct: 207 RKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTETSIILF 266
Query: 52 ANKQDL 57
NK+DL
Sbjct: 267 LNKKDL 272
>pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|B Chain B, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|A Chain A, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation
Length = 356
Score = 35.4 bits (80), Expect = 0.008, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 10/66 (15%)
Query: 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRM----------LNEDELRDAVLLVF 51
R W H F+ +IF V +D D V+ +E++RM N D +++F
Sbjct: 210 RKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMHLFNSICNNKWFTDTSIILF 269
Query: 52 ANKQDL 57
NK+DL
Sbjct: 270 LNKKDL 275
>pdb|1GOT|A Chain A, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
Length = 350
Score = 32.7 bits (73), Expect = 0.050, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 10/66 (15%)
Query: 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV----------LLVF 51
R W H F+ +IF V +D D V+ +E +R +L D++ +++F
Sbjct: 204 RKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEXNRXHESXKLFDSICNNKWFTDTSIILF 263
Query: 52 ANKQDL 57
NK+DL
Sbjct: 264 LNKKDL 269
>pdb|3T12|A Chain A, Mgla In Complex With Mglb In Transition State
pdb|3T1O|A Chain A, Mgla Bound To Gdp
pdb|3T1O|B Chain B, Mgla Bound To Gdp
pdb|3T1Q|A Chain A, Mgla Bound To Gppnhp In Complex With Mglb
Length = 198
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 18/108 (16%)
Query: 10 QNTQGLIFVVDSNDRDRVVEARDELHRMLNED------ELRDAVLLVFANKQDLPNAMNA 63
+ G++FV DS + A E R + E+ L D +++ NK+DLP+A+
Sbjct: 96 RGVDGIVFVADSAPNR--LRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPV 153
Query: 64 A---EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKV 108
+ D G + + AT G+G++E L +S + +V
Sbjct: 154 EMVRAVVDPEG-------KFPVLEAVATEGKGVFETLKEVSRLVLARV 194
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 12/94 (12%)
Query: 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP-- 58
R L +F++ G + + D + + R+ + ++ + +++ NK DLP
Sbjct: 97 FRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQ 156
Query: 59 ---NAMNAAEITDKLGLHSLRQRHWYIQSTCATS 89
N A E+ DK G+ Y +++ AT
Sbjct: 157 REVNERQARELADKYGIP-------YFETSAATG 183
>pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
pdb|3C7K|C Chain C, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
Length = 333
Score = 30.8 bits (68), Expect = 0.22, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 10/66 (15%)
Query: 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV----------LLVF 51
R W H F++ +IF V + D+V+ + +RM L D++ +++F
Sbjct: 188 RKKWIHCFEDVTAIIFCVALSGYDQVLHEDETTNRMHESLMLFDSICNNKFFIDTSIILF 247
Query: 52 ANKQDL 57
NK+DL
Sbjct: 248 LNKKDL 253
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 42/110 (38%), Gaps = 4/110 (3%)
Query: 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60
R L Y++ QG+I V D RD V+ + L+ + D V + NK D N
Sbjct: 77 FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKIDKEN- 135
Query: 61 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKVGL 110
E+ GL R+ A + +G+ + L I GL
Sbjct: 136 ---REVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKIIQTPGL 182
>pdb|3T1T|A Chain A, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|B Chain B, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|C Chain C, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|D Chain D, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1V|A Chain A, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|B Chain B, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|C Chain C, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|D Chain D, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
Length = 198
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 18/108 (16%)
Query: 10 QNTQGLIFVVDSNDRDRVVEARDELHRMLNED------ELRDAVLLVFANKQDLPNAMNA 63
+ G++FV DS + A E R E+ L D +++ NK+DLP+A+
Sbjct: 96 RGVDGIVFVADSAPNR--LRANAESXRNXRENLAEYGLTLDDVPIVIQVNKRDLPDALPV 153
Query: 64 A---EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKV 108
+ D G + + AT G+G++E L +S + +V
Sbjct: 154 EXVRAVVDPEG-------KFPVLEAVATEGKGVFETLKEVSRLVLARV 194
>pdb|2XTZ|A Chain A, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|B Chain B, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|C Chain C, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
Length = 354
Score = 30.0 bits (66), Expect = 0.38, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 10/66 (15%)
Query: 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVL----------LVF 51
R W H F+ +IF ++ D+ + ++ +RM+ EL D VL ++F
Sbjct: 197 RRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLF 256
Query: 52 ANKQDL 57
NK D+
Sbjct: 257 LNKFDI 262
>pdb|3AH8|A Chain A, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
Length = 355
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL----------RDAVLLVF 51
R W H F+N ++F+V ++ D+V+ D +RM L +++ +++F
Sbjct: 209 RRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILF 268
Query: 52 ANKQDL 57
NK+DL
Sbjct: 269 LNKKDL 274
>pdb|3OHM|A Chain A, Crystal Structure Of Activated G Alpha Q Bound To Its
Effector Phospholipase C Beta 3
Length = 327
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL----------RDAVLLVF 51
R W H F+N ++F+V ++ D+V+ D +RM L +++ +++F
Sbjct: 181 RRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILF 240
Query: 52 ANKQDL 57
NK+DL
Sbjct: 241 LNKKDL 246
>pdb|2BCJ|Q Chain Q, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|2RGN|A Chain A, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|D Chain D, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 353
Score = 29.3 bits (64), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL----------RDAVLLVF 51
R W H F+N ++F+V ++ D+V+ D +RM L +++ +++F
Sbjct: 207 RRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILF 266
Query: 52 ANKQDL 57
NK+DL
Sbjct: 267 LNKKDL 272
>pdb|4EKC|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKC|C Chain C, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKD|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
Length = 347
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL----------RDAVLLVF 51
R W H F+N ++F+V ++ D+V+ D +RM L +++ +++F
Sbjct: 201 RRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILF 260
Query: 52 ANKQDL 57
NK+DL
Sbjct: 261 LNKKDL 266
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 29.3 bits (64), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/94 (20%), Positives = 40/94 (42%), Gaps = 12/94 (12%)
Query: 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP-- 58
R L +F++ G + + D + + R+ + ++ + +++ NK DLP
Sbjct: 83 FRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQ 142
Query: 59 ---NAMNAAEITDKLGLHSLRQRHWYIQSTCATS 89
N A E+ +K G+ Y +++ AT
Sbjct: 143 REVNERQARELAEKYGIP-------YFETSAATG 169
>pdb|4GNK|A Chain A, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|C Chain C, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 353
Score = 29.3 bits (64), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL----------RDAVLLVF 51
R W H F+N ++F+V ++ D+V+ D +RM L +++ +++F
Sbjct: 207 RRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILF 266
Query: 52 ANKQDL 57
NK+DL
Sbjct: 267 LNKKDL 272
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 28.9 bits (63), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/94 (20%), Positives = 40/94 (42%), Gaps = 12/94 (12%)
Query: 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP-- 58
R L +F++ G + + D + + R+ + ++ + +++ NK DLP
Sbjct: 83 FRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQ 142
Query: 59 ---NAMNAAEITDKLGLHSLRQRHWYIQSTCATS 89
N A E+ +K G+ Y +++ AT
Sbjct: 143 REVNERQARELAEKYGIP-------YFETSAATG 169
>pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
pdb|1SHZ|D Chain D, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
Length = 340
Score = 28.9 bits (63), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 10/66 (15%)
Query: 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV----------LLVF 51
R W F+ +IF V +D D+V+ + +RM +L D++ +++F
Sbjct: 194 RKKWFECFEGVTAIIFCVALSDYDQVLMEDRQTNRMHESMKLFDSICNNKWFTDTSIILF 253
Query: 52 ANKQDL 57
NK+DL
Sbjct: 254 LNKKDL 259
>pdb|1TND|A Chain A, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|B Chain B, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|C Chain C, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TAD|A Chain A, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|B Chain B, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|C Chain C, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAG|A Chain A, Structural Determinants For Activation Of The
Alpha-Subunit Of A Heterotrimeric G Protein
Length = 324
Score = 28.5 bits (62), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 10/66 (15%)
Query: 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV----------LLVF 51
R W H F+ +IF+ + D V+ DE++RM L +++ +++F
Sbjct: 178 RKKWIHCFEGVTCIIFIAALSAYDMVLVEDDEVNRMHESLHLFNSICNHRYFATTSIVLF 237
Query: 52 ANKQDL 57
NK+D+
Sbjct: 238 LNKKDV 243
>pdb|1CJK|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1TL7|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
Length = 402
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 10/66 (15%)
Query: 2 RPLWRHYFQNTQGLIFVVDS----------NDRDRVVEARDELHRMLNEDELRDAVLLVF 51
R W F + +IFVV S N +R+ EA + + N LR +++F
Sbjct: 231 RRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILF 290
Query: 52 ANKQDL 57
NKQDL
Sbjct: 291 LNKQDL 296
>pdb|1CUL|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
Length = 380
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 10/66 (15%)
Query: 2 RPLWRHYFQNTQGLIFVVDS----------NDRDRVVEARDELHRMLNEDELRDAVLLVF 51
R W F + +IFVV S N +R+ EA + + N LR +++F
Sbjct: 217 RRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILF 276
Query: 52 ANKQDL 57
NKQDL
Sbjct: 277 LNKQDL 282
>pdb|3SN6|A Chain A, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 380
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 10/66 (15%)
Query: 2 RPLWRHYFQNTQGLIFVVDS----------NDRDRVVEARDELHRMLNEDELRDAVLLVF 51
R W F + +IFVV S N +R+ EA + + N LR +++F
Sbjct: 217 RRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILF 276
Query: 52 ANKQDL 57
NKQDL
Sbjct: 277 LNKQDL 282
>pdb|1AZS|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1AZT|A Chain A, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|1AZT|B Chain B, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|3C14|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
Length = 402
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 10/66 (15%)
Query: 2 RPLWRHYFQNTQGLIFVVDS----------NDRDRVVEARDELHRMLNEDELRDAVLLVF 51
R W F + +IFVV S N +R+ EA + + N LR +++F
Sbjct: 231 RRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILF 290
Query: 52 ANKQDL 57
NKQDL
Sbjct: 291 LNKQDL 296
>pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|C Chain C, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|C Chain C, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3G82|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|C Chain C, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 394
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 10/66 (15%)
Query: 2 RPLWRHYFQNTQGLIFVVDS----------NDRDRVVEARDELHRMLNEDELRDAVLLVF 51
R W F + +IFVV S N +R+ EA + + N LR +++F
Sbjct: 231 RRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILF 290
Query: 52 ANKQDL 57
NKQDL
Sbjct: 291 LNKQDL 296
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 20/118 (16%)
Query: 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANKQDL 57
R + Y++ G+I V D D++ + E+ R +E+ + L+ NK DL
Sbjct: 71 FRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNK----LLVGNKSDL 126
Query: 58 PNA-----MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKVGL 110
A E D LG+ L T A + + + ++ I ++GL
Sbjct: 127 TTKKVVDNTTAKEFADSLGIPFLE--------TSAKNATNVEQAFMTMAAEIKKRMGL 176
>pdb|1ZIC|A Chain A, Crystal Structure Analysis Of The Dienelactone Hydrolase
(c123s, R206a) Mutant- 1.7 A
Length = 236
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 34 LHRMLNE-DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQ---STCATS 89
L + LN+ E++ L + A + IT+ G + L Q HWY + S ATS
Sbjct: 149 LEKQLNKVPEVKHPALFHMGGQDHFVPAPSRQLITEGFGANPLLQVHWYEEAGHSFAATS 208
Query: 90 GEGLYEGLDWLSN 102
G L+N
Sbjct: 209 SSGYVASAAALAN 221
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 12/83 (14%)
Query: 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANKQDL 57
R + Y++ G+I V D D++ + E+ R +E+ + L+ NK DL
Sbjct: 71 FRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNK----LLVGNKSDL 126
Query: 58 PNA-----MNAAEITDKLGLHSL 75
A E D LG+ L
Sbjct: 127 TTKKVVDNTTAKEFADSLGIPFL 149
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 12/94 (12%)
Query: 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP-- 58
R L +F++ G + D + + R+ ++ + +++ NK DLP
Sbjct: 83 FRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVLIGNKADLPDQ 142
Query: 59 ---NAMNAAEITDKLGLHSLRQRHWYIQSTCATS 89
N A E+ +K G+ Y +++ AT
Sbjct: 143 REVNERQARELAEKYGIP-------YFETSAATG 169
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 12/94 (12%)
Query: 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP-- 58
R L +F++ G + D + + R+ ++ + +++ NK DLP
Sbjct: 83 FRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVLIGNKADLPDQ 142
Query: 59 ---NAMNAAEITDKLGLHSLRQRHWYIQSTCATS 89
N A E+ +K G+ Y +++ AT
Sbjct: 143 REVNERQARELAEKYGIP-------YFETSAATG 169
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Query: 8 YFQNTQGLIFVVDSNDRDRVVEARD---ELHRMLNEDELRDAVLLVFANKQDLPNAMNAA 64
Y++++ G I V D D D + ++ EL +ML + L + NK DL + +
Sbjct: 75 YYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG----NEICLCIVGNKIDLEKERHVS 130
Query: 65 EITDKLGLHSLRQRHWYIQSTCATSGEGLYE 95
+ S+ +H++ T A +G+ E
Sbjct: 131 IQEAESYAESVGAKHYH---TSAKQNKGIEE 158
>pdb|2VE3|A Chain A, Retinoic Acid Bound Cyanobacterial Cyp120a1
pdb|2VE3|B Chain B, Retinoic Acid Bound Cyanobacterial Cyp120a1
pdb|2VE4|A Chain A, Substrate Free Cyanobacterial Cyp120a1
pdb|2VE4|B Chain B, Substrate Free Cyanobacterial Cyp120a1
Length = 444
Score = 26.9 bits (58), Expect = 2.5, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 36/54 (66%), Gaps = 4/54 (7%)
Query: 27 VVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMNAAEITDKLGLHS-LRQR 78
++ ARD+ ++ L+ EL+D + LL+FA + L +A+++ + LG HS +R+R
Sbjct: 228 LLAARDDNNQPLSLPELKDQILLLLFAGHETLTSALSSFCLL--LGQHSDIRER 279
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Query: 8 YFQNTQGLIFVVDSNDRDRVVEARD---ELHRMLNEDELRDAVLLVFANKQDLPNAMNAA 64
Y++++ G I V D D D + ++ EL +ML + L + NK DL + +
Sbjct: 89 YYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG----NEICLCIVGNKIDLEKERHVS 144
Query: 65 EITDKLGLHSLRQRHWYIQSTCATSGEGLYE 95
+ S+ +H++ T A +G+ E
Sbjct: 145 IQEAESYAESVGAKHYH---TSAKQNKGIEE 172
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Query: 8 YFQNTQGLIFVVDSNDRDRVVEARD---ELHRMLNEDELRDAVLLVFANKQDLPNAMNAA 64
Y++++ G I V D D D + ++ EL +ML + L + NK DL + +
Sbjct: 75 YYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG----NEICLCIVGNKIDLEKERHVS 130
Query: 65 EITDKLGLHSLRQRHWYIQSTCATSGEGLYE 95
+ S+ +H++ T A +G+ E
Sbjct: 131 IQEAESYAESVGAKHYH---TSAKQNKGIEE 158
>pdb|1ZCA|A Chain A, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
pdb|1ZCA|B Chain B, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
Length = 359
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 10/66 (15%)
Query: 2 RPLWRHYFQNTQGLIFVVDSNDRD----------RVVEARDELHRMLNEDELRDAVLLVF 51
R W F ++F+V S++ D R+VE+ + ++N + +++F
Sbjct: 213 RQKWFQCFDGITSILFMVSSSEYDQVLMEDRRTNRLVESMNIFETIVNNKLFFNVSIILF 272
Query: 52 ANKQDL 57
NK DL
Sbjct: 273 LNKMDL 278
>pdb|4EFI|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase From Burkholderia Xenovorans Lb400
Length = 354
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 62 NAAEITDKLGLHSLRQRHWYIQST-----CATSGEGLYEGLDWLSNNI 104
+A+ + D + + + +R W T C +GE L GL W +++I
Sbjct: 41 DASAVRDVVKMIGVNRRRWADAQTSAGDLCRKAGEKLLAGLGWQADSI 88
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 58
R + Y++ T G+I V D + V + LH + D ++ NK D P
Sbjct: 71 FRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEI--NQNCDDVCRILVGNKNDDP 126
>pdb|1LLW|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Complex With
2-Oxoglutarate
pdb|1LLZ|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Reduced Enzyme
pdb|1LM1|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Native Enzyme
pdb|1OFD|A Chain A, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate At 2.0 Angstrom Resolution
pdb|1OFD|B Chain B, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate At 2.0 Angstrom Resolution
pdb|1OFE|A Chain A, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate And L-Don At 2.45 Angstrom Resolution
pdb|1OFE|B Chain B, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate And L-Don At 2.45 Angstrom Resolution
Length = 1520
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 15/17 (88%)
Query: 33 ELHRMLNEDELRDAVLL 49
E+HR+L E++LRD VLL
Sbjct: 1086 EVHRVLMENQLRDRVLL 1102
>pdb|2XD2|A Chain A, The Crystal Structure Of Malx From Streptococcus
Pneumoniae
pdb|2XD2|B Chain B, The Crystal Structure Of Malx From Streptococcus
Pneumoniae
pdb|2XD3|A Chain A, The Crystal Structure Of Malx From Streptococcus
Pneumoniae In Complex With Maltopentaose
Length = 416
Score = 25.8 bits (55), Expect = 6.8, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 41 DELRDAVLLVFANKQDLPNAMNAAEITD 68
DEL AV+ F N Q LPN + + D
Sbjct: 352 DELTTAVIKQFKNTQPLPNISQMSAVWD 379
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,274,702
Number of Sequences: 62578
Number of extensions: 115793
Number of successful extensions: 513
Number of sequences better than 100.0: 120
Number of HSP's better than 100.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 372
Number of HSP's gapped (non-prelim): 120
length of query: 110
length of database: 14,973,337
effective HSP length: 74
effective length of query: 36
effective length of database: 10,342,565
effective search space: 372332340
effective search space used: 372332340
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)