Query 044598
Match_columns 110
No_of_seqs 126 out of 1506
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 04:53:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044598.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044598hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00223 ADP-ribosylation fact 99.9 1.7E-23 3.7E-28 124.3 12.2 107 1-107 74-180 (181)
2 PF00025 Arf: ADP-ribosylation 99.9 4.8E-23 1E-27 121.8 12.7 104 1-104 71-175 (175)
3 smart00177 ARF ARF-like small 99.9 1.4E-22 3.1E-27 119.8 12.1 105 1-105 70-174 (175)
4 KOG0070 GTP-binding ADP-ribosy 99.9 2E-22 4.3E-27 117.0 11.4 107 1-107 74-180 (181)
5 cd04149 Arf6 Arf6 subfamily. 99.9 1.8E-22 3.8E-27 118.7 11.1 102 1-102 66-167 (168)
6 PTZ00133 ADP-ribosylation fact 99.9 3.8E-22 8.2E-27 118.6 12.6 108 1-108 74-181 (182)
7 cd04150 Arf1_5_like Arf1-Arf5- 99.9 5.2E-22 1.1E-26 115.7 11.4 102 1-102 57-158 (159)
8 KOG0071 GTP-binding ADP-ribosy 99.9 4E-22 8.6E-27 111.3 9.7 105 1-105 74-178 (180)
9 KOG0073 GTP-binding ADP-ribosy 99.9 1.6E-21 3.4E-26 111.3 10.4 107 1-107 73-180 (185)
10 KOG0075 GTP-binding ADP-ribosy 99.9 1.8E-21 3.9E-26 109.5 10.5 106 1-106 78-183 (186)
11 cd04158 ARD1 ARD1 subfamily. 99.9 7.1E-21 1.5E-25 111.9 12.8 108 1-108 56-164 (169)
12 KOG0072 GTP-binding ADP-ribosy 99.9 1.5E-21 3.2E-26 109.4 8.6 107 1-107 75-181 (182)
13 KOG0084 GTPase Rab1/YPT1, smal 99.9 3E-21 6.4E-26 113.1 9.7 103 1-109 71-176 (205)
14 cd04161 Arl2l1_Arl13_like Arl2 99.9 1E-20 2.2E-25 111.0 11.4 102 1-102 56-166 (167)
15 cd04157 Arl6 Arl6 subfamily. 99.9 2.8E-20 6.1E-25 108.2 11.7 102 1-102 58-161 (162)
16 cd04121 Rab40 Rab40 subfamily. 99.9 1.8E-20 3.9E-25 112.0 11.0 102 1-109 68-171 (189)
17 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 2.8E-20 6E-25 109.9 11.6 101 2-102 73-173 (174)
18 cd04151 Arl1 Arl1 subfamily. 99.9 3.8E-20 8.3E-25 107.6 11.8 102 1-102 56-157 (158)
19 smart00178 SAR Sar1p-like memb 99.8 3.6E-20 7.8E-25 110.3 11.5 102 2-103 75-183 (184)
20 cd04154 Arl2 Arl2 subfamily. 99.8 3.6E-20 7.8E-25 109.2 11.4 102 1-102 71-172 (173)
21 cd04120 Rab12 Rab12 subfamily. 99.8 7.9E-20 1.7E-24 110.2 11.6 103 1-108 62-166 (202)
22 cd04156 ARLTS1 ARLTS1 subfamil 99.8 2E-19 4.4E-24 104.6 11.4 101 2-102 58-159 (160)
23 KOG0078 GTP-binding protein SE 99.8 1E-19 2.3E-24 107.7 9.9 102 1-108 74-177 (207)
24 KOG0092 GTPase Rab5/YPT51 and 99.8 6.7E-20 1.5E-24 107.1 8.9 100 1-106 67-168 (200)
25 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 5.2E-19 1.1E-23 105.2 12.6 106 1-106 65-171 (183)
26 cd00879 Sar1 Sar1 subfamily. 99.8 4.5E-19 9.8E-24 105.8 11.9 103 2-104 77-190 (190)
27 PTZ00099 rab6; Provisional 99.8 4.3E-19 9.3E-24 105.0 11.2 100 1-106 42-143 (176)
28 smart00176 RAN Ran (Ras-relate 99.8 3.1E-19 6.8E-24 107.5 10.7 99 1-107 57-156 (200)
29 cd04162 Arl9_Arfrp2_like Arl9/ 99.8 9.3E-19 2E-23 102.5 11.1 100 1-102 57-163 (164)
30 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.8 7.7E-19 1.7E-23 103.6 10.5 102 1-107 63-166 (172)
31 cd00878 Arf_Arl Arf (ADP-ribos 99.8 2.3E-18 4.9E-23 100.0 11.8 101 2-102 57-157 (158)
32 cd04107 Rab32_Rab38 Rab38/Rab3 99.8 1.9E-18 4.1E-23 104.1 11.6 103 1-108 63-171 (201)
33 cd04160 Arfrp1 Arfrp1 subfamil 99.8 2E-18 4.3E-23 101.0 11.1 101 2-102 64-166 (167)
34 cd04122 Rab14 Rab14 subfamily. 99.8 2.8E-18 6E-23 100.5 11.2 100 1-106 64-165 (166)
35 cd04127 Rab27A Rab27a subfamil 99.8 2.2E-18 4.8E-23 102.0 10.6 101 2-107 77-179 (180)
36 cd04133 Rop_like Rop subfamily 99.8 1.9E-18 4.2E-23 102.2 10.3 98 1-105 62-173 (176)
37 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.8 8.1E-19 1.8E-23 102.9 8.0 104 1-107 84-187 (221)
38 cd04175 Rap1 Rap1 subgroup. T 99.8 3.7E-18 8.1E-23 99.7 10.8 100 1-105 62-163 (164)
39 cd00877 Ran Ran (Ras-related n 99.8 4.2E-18 9.1E-23 99.9 10.9 100 2-108 63-162 (166)
40 cd01875 RhoG RhoG subfamily. 99.8 3.1E-18 6.7E-23 102.6 10.5 103 1-106 64-178 (191)
41 cd04155 Arl3 Arl3 subfamily. 99.8 7.2E-18 1.6E-22 99.2 11.3 101 2-102 72-172 (173)
42 KOG0076 GTP-binding ADP-ribosy 99.8 2.7E-19 5.8E-24 103.1 4.9 107 1-107 82-189 (197)
43 cd04126 Rab20 Rab20 subfamily. 99.8 7.9E-18 1.7E-22 102.7 11.5 105 1-106 57-191 (220)
44 cd04136 Rap_like Rap-like subf 99.8 6.5E-18 1.4E-22 98.4 10.4 99 1-104 62-162 (163)
45 cd04159 Arl10_like Arl10-like 99.8 1.6E-17 3.5E-22 95.9 12.0 102 1-102 57-158 (159)
46 PTZ00369 Ras-like protein; Pro 99.8 1.2E-17 2.6E-22 99.8 11.3 102 1-107 66-169 (189)
47 PLN03071 GTP-binding nuclear p 99.8 6.5E-18 1.4E-22 103.1 10.2 99 1-107 75-174 (219)
48 cd04176 Rap2 Rap2 subgroup. T 99.8 9.9E-18 2.1E-22 97.8 10.5 99 1-104 62-162 (163)
49 KOG0098 GTPase Rab2, small G p 99.8 2.6E-18 5.6E-23 100.2 7.7 101 1-107 68-170 (216)
50 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.8 8.3E-18 1.8E-22 100.0 10.0 99 1-106 66-181 (182)
51 cd04138 H_N_K_Ras_like H-Ras/N 99.8 1.1E-17 2.4E-22 97.1 10.2 99 1-104 62-161 (162)
52 cd04144 Ras2 Ras2 subfamily. 99.8 2E-17 4.4E-22 98.9 10.8 102 1-107 60-165 (190)
53 cd01865 Rab3 Rab3 subfamily. 99.8 2.8E-17 6.1E-22 96.2 11.1 99 2-106 64-164 (165)
54 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.8 3.2E-17 7E-22 100.6 11.2 100 1-107 74-190 (232)
55 cd04128 Spg1 Spg1p. Spg1p (se 99.8 1E-17 2.2E-22 99.6 8.8 102 1-106 62-167 (182)
56 cd04108 Rab36_Rab34 Rab34/Rab3 99.8 3.9E-17 8.4E-22 96.2 11.1 102 1-106 62-166 (170)
57 cd01867 Rab8_Rab10_Rab13_like 99.7 4.9E-17 1.1E-21 95.3 11.2 99 2-106 66-166 (167)
58 cd04145 M_R_Ras_like M-Ras/R-R 99.7 3.5E-17 7.5E-22 95.4 10.3 99 1-104 63-163 (164)
59 cd04119 RJL RJL (RabJ-Like) su 99.7 4.5E-17 9.7E-22 95.1 10.7 99 2-105 63-167 (168)
60 smart00173 RAS Ras subfamily o 99.7 5.8E-17 1.3E-21 94.5 11.1 101 1-106 61-163 (164)
61 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.7 5.4E-17 1.2E-21 94.9 11.0 99 2-106 65-165 (166)
62 cd04111 Rab39 Rab39 subfamily. 99.7 5.1E-17 1.1E-21 98.7 11.2 101 2-107 66-168 (211)
63 cd01871 Rac1_like Rac1-like su 99.7 3.3E-17 7.2E-22 96.8 10.1 101 1-103 62-173 (174)
64 cd04109 Rab28 Rab28 subfamily. 99.7 6.4E-17 1.4E-21 98.4 11.3 100 2-106 64-167 (215)
65 KOG0093 GTPase Rab3, small G p 99.7 2.3E-17 5E-22 93.1 8.3 99 1-108 83-186 (193)
66 KOG0074 GTP-binding ADP-ribosy 99.7 3.4E-18 7.3E-23 95.9 4.7 105 1-105 75-179 (185)
67 cd04117 Rab15 Rab15 subfamily. 99.7 8.3E-17 1.8E-21 93.9 10.7 96 2-103 63-160 (161)
68 cd04124 RabL2 RabL2 subfamily. 99.7 6.6E-17 1.4E-21 94.3 10.1 99 1-107 62-160 (161)
69 cd04131 Rnd Rnd subfamily. Th 99.7 5E-17 1.1E-21 96.4 9.7 98 1-105 62-176 (178)
70 cd04134 Rho3 Rho3 subfamily. 99.7 8.2E-17 1.8E-21 96.2 10.1 104 1-106 61-175 (189)
71 cd04112 Rab26 Rab26 subfamily. 99.7 1.5E-16 3.2E-21 95.3 11.1 100 2-107 64-165 (191)
72 KOG0086 GTPase Rab4, small G p 99.7 7.8E-17 1.7E-21 91.6 9.2 102 1-108 71-174 (214)
73 cd04125 RabA_like RabA-like su 99.7 1.8E-16 4E-21 94.5 11.4 101 2-108 63-165 (188)
74 cd01874 Cdc42 Cdc42 subfamily. 99.7 8.7E-17 1.9E-21 95.1 9.7 98 1-103 62-173 (175)
75 cd01868 Rab11_like Rab11-like. 99.7 1.8E-16 4E-21 92.6 10.8 97 2-104 66-164 (165)
76 cd04103 Centaurin_gamma Centau 99.7 1E-16 2.2E-21 93.4 9.6 94 6-103 60-157 (158)
77 cd01873 RhoBTB RhoBTB subfamil 99.7 8.4E-17 1.8E-21 96.7 9.3 93 4-103 80-194 (195)
78 cd04110 Rab35 Rab35 subfamily. 99.7 2.4E-16 5.3E-21 94.9 11.3 100 1-107 68-169 (199)
79 cd01866 Rab2 Rab2 subfamily. 99.7 2.6E-16 5.6E-21 92.4 11.2 99 2-106 67-167 (168)
80 cd04143 Rhes_like Rhes_like su 99.7 3.6E-16 7.8E-21 96.9 11.7 99 2-104 62-170 (247)
81 KOG0087 GTPase Rab11/YPT3, sma 99.7 1.4E-16 3E-21 94.6 9.2 100 1-106 76-177 (222)
82 cd04140 ARHI_like ARHI subfami 99.7 2E-16 4.3E-21 92.6 9.9 97 1-102 62-162 (165)
83 cd01864 Rab19 Rab19 subfamily. 99.7 3.6E-16 7.9E-21 91.4 10.9 97 2-103 66-164 (165)
84 PLN03108 Rab family protein; P 99.7 3.5E-16 7.6E-21 94.9 11.1 100 2-107 69-170 (210)
85 cd04116 Rab9 Rab9 subfamily. 99.7 4.1E-16 8.9E-21 91.5 11.0 99 1-103 67-169 (170)
86 PLN03110 Rab GTPase; Provision 99.7 3.6E-16 7.7E-21 95.3 10.9 100 1-106 74-175 (216)
87 cd04132 Rho4_like Rho4-like su 99.7 2.8E-16 6.1E-21 93.6 10.2 99 2-107 63-169 (187)
88 cd01892 Miro2 Miro2 subfamily. 99.7 4.2E-16 9.1E-21 91.7 10.5 94 2-105 68-166 (169)
89 cd04101 RabL4 RabL4 (Rab-like4 99.7 4.2E-16 9E-21 90.9 10.4 96 2-104 66-163 (164)
90 cd04147 Ras_dva Ras-dva subfam 99.7 5.4E-16 1.2E-20 93.3 11.0 100 2-105 61-163 (198)
91 cd01860 Rab5_related Rab5-rela 99.7 6.1E-16 1.3E-20 90.1 11.0 97 2-104 64-162 (163)
92 cd04113 Rab4 Rab4 subfamily. 99.7 4.7E-16 1E-20 90.5 10.3 96 2-103 63-160 (161)
93 cd04139 RalA_RalB RalA/RalB su 99.7 7.7E-16 1.7E-20 89.6 11.0 100 2-106 62-163 (164)
94 smart00174 RHO Rho (Ras homolo 99.7 3.9E-16 8.5E-21 91.9 9.9 98 2-106 60-173 (174)
95 cd01863 Rab18 Rab18 subfamily. 99.7 5.8E-16 1.3E-20 90.1 10.4 97 2-103 63-160 (161)
96 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.7 6.6E-16 1.4E-20 94.4 10.9 105 1-106 62-177 (222)
97 cd04142 RRP22 RRP22 subfamily. 99.7 8.1E-16 1.8E-20 92.6 10.8 98 6-107 75-176 (198)
98 cd04106 Rab23_lke Rab23-like s 99.7 6.1E-16 1.3E-20 90.0 9.9 95 2-103 65-161 (162)
99 cd01862 Rab7 Rab7 subfamily. 99.7 1.4E-15 3E-20 89.2 11.5 103 2-108 63-170 (172)
100 cd04115 Rab33B_Rab33A Rab33B/R 99.7 6.6E-16 1.4E-20 90.8 9.9 98 3-105 67-169 (170)
101 cd04123 Rab21 Rab21 subfamily. 99.7 1.2E-15 2.6E-20 88.6 10.9 97 2-104 63-161 (162)
102 smart00175 RAB Rab subfamily o 99.7 1.2E-15 2.6E-20 88.8 10.9 98 3-106 64-163 (164)
103 cd04177 RSR1 RSR1 subgroup. R 99.7 1.1E-15 2.4E-20 89.6 10.8 101 1-105 62-164 (168)
104 KOG0081 GTPase Rab27, small G 99.7 2.4E-16 5.1E-21 90.2 7.4 103 1-108 80-184 (219)
105 KOG0079 GTP-binding protein H- 99.7 3.5E-16 7.5E-21 88.5 7.7 100 1-107 70-171 (198)
106 cd04118 Rab24 Rab24 subfamily. 99.7 3.8E-16 8.3E-21 93.4 8.4 99 2-107 64-168 (193)
107 KOG0091 GTPase Rab39, small G 99.7 8.2E-16 1.8E-20 88.3 9.2 102 1-107 71-175 (213)
108 KOG0394 Ras-related GTPase [Ge 99.7 9.3E-16 2E-20 89.5 9.2 102 1-106 71-179 (210)
109 cd01861 Rab6 Rab6 subfamily. 99.7 1.6E-15 3.5E-20 88.1 10.4 96 2-103 63-160 (161)
110 PLN03118 Rab family protein; P 99.7 2.9E-15 6.4E-20 90.9 11.5 101 1-106 75-178 (211)
111 cd04148 RGK RGK subfamily. Th 99.7 2.5E-15 5.4E-20 91.9 11.1 96 6-106 66-164 (221)
112 cd04146 RERG_RasL11_like RERG/ 99.7 1.7E-15 3.8E-20 88.5 10.0 98 3-105 63-164 (165)
113 PF00071 Ras: Ras family; Int 99.7 1.8E-15 3.9E-20 88.1 9.6 97 3-105 63-161 (162)
114 KOG0080 GTPase Rab18, small G 99.7 4.7E-16 1E-20 89.0 6.7 101 1-106 73-175 (209)
115 KOG0088 GTPase Rab21, small G 99.7 4.2E-16 9.2E-21 89.1 6.4 100 1-106 75-176 (218)
116 cd04137 RheB Rheb (Ras Homolog 99.7 4.1E-15 8.9E-20 88.0 10.9 102 1-107 62-165 (180)
117 cd01893 Miro1 Miro1 subfamily. 99.7 1.2E-15 2.7E-20 89.3 8.4 100 2-106 61-165 (166)
118 cd04135 Tc10 TC10 subfamily. 99.6 4.3E-15 9.3E-20 87.4 9.9 101 2-104 62-173 (174)
119 cd04130 Wrch_1 Wrch-1 subfamil 99.6 4.9E-16 1.1E-20 91.6 5.9 95 1-102 61-171 (173)
120 cd00154 Rab Rab family. Rab G 99.6 8E-15 1.7E-19 84.5 9.7 94 2-101 63-158 (159)
121 KOG0083 GTPase Rab26/Rab37, sm 99.6 9.8E-16 2.1E-20 85.4 5.6 98 1-107 60-162 (192)
122 cd00876 Ras Ras family. The R 99.6 1.5E-14 3.2E-19 83.8 9.9 98 2-104 61-160 (160)
123 cd04114 Rab30 Rab30 subfamily. 99.6 2.1E-14 4.6E-19 84.1 10.6 98 2-104 70-168 (169)
124 KOG0395 Ras-related GTPase [Ge 99.6 3.9E-14 8.5E-19 85.1 11.0 100 2-106 65-166 (196)
125 KOG0097 GTPase Rab14, small G 99.6 1.6E-14 3.4E-19 81.4 8.6 99 1-105 73-173 (215)
126 KOG0095 GTPase Rab30, small G 99.6 1.5E-15 3.2E-20 86.2 4.4 102 1-107 69-171 (213)
127 cd01890 LepA LepA subfamily. 99.6 2.5E-14 5.4E-19 84.5 9.8 95 1-105 80-177 (179)
128 cd01870 RhoA_like RhoA-like su 99.6 2.8E-14 6.1E-19 84.0 9.7 101 2-104 63-174 (175)
129 cd01898 Obg Obg subfamily. Th 99.6 6.1E-14 1.3E-18 82.1 9.1 91 9-103 76-169 (170)
130 PRK12299 obgE GTPase CgtA; Rev 99.6 3.9E-14 8.5E-19 91.2 8.8 96 7-106 232-329 (335)
131 cd00157 Rho Rho (Ras homology) 99.6 1.4E-14 3.1E-19 84.8 6.3 94 3-102 63-170 (171)
132 cd04129 Rho2 Rho2 subfamily. 99.5 1.4E-13 3.1E-18 82.1 10.0 95 4-105 65-173 (187)
133 PTZ00132 GTP-binding nuclear p 99.5 2.2E-13 4.7E-18 82.9 10.9 100 2-108 72-171 (215)
134 TIGR00157 ribosome small subun 99.5 3.7E-14 7.9E-19 87.9 6.4 92 2-102 27-120 (245)
135 TIGR02729 Obg_CgtA Obg family 99.5 2.2E-13 4.9E-18 87.6 8.6 94 7-104 231-328 (329)
136 cd01897 NOG NOG1 is a nucleola 99.5 4.1E-13 8.8E-18 78.6 8.6 87 11-104 79-167 (168)
137 TIGR02528 EutP ethanolamine ut 99.4 3.8E-13 8.1E-18 76.8 6.2 82 8-101 59-141 (142)
138 KOG0077 Vesicle coat complex C 99.4 2.6E-13 5.6E-18 78.2 5.4 103 2-104 78-192 (193)
139 cd01859 MJ1464 MJ1464. This f 99.4 5.4E-13 1.2E-17 77.5 6.0 94 2-105 3-96 (156)
140 cd01887 IF2_eIF5B IF2/eIF5B (i 99.4 2.5E-12 5.4E-17 75.1 8.8 98 2-105 64-166 (168)
141 cd01878 HflX HflX subfamily. 99.4 2.3E-12 5E-17 77.8 8.9 87 9-104 118-204 (204)
142 cd01881 Obg_like The Obg-like 99.4 1.2E-12 2.7E-17 76.9 7.5 94 7-103 70-175 (176)
143 COG2229 Predicted GTPase [Gene 99.4 3.6E-12 7.7E-17 74.6 9.1 96 1-103 81-176 (187)
144 cd01855 YqeH YqeH. YqeH is an 99.4 1.3E-12 2.7E-17 78.3 6.9 98 1-105 24-125 (190)
145 PRK03003 GTP-binding protein D 99.4 4E-12 8.7E-17 85.4 9.8 94 7-105 289-382 (472)
146 cd00881 GTP_translation_factor 99.4 1.1E-11 2.5E-16 73.5 10.3 99 2-105 76-187 (189)
147 PRK03003 GTP-binding protein D 99.4 3.1E-12 6.6E-17 85.9 8.6 92 3-106 109-200 (472)
148 PRK12297 obgE GTPase CgtA; Rev 99.4 7.5E-12 1.6E-16 82.8 10.3 92 8-106 233-328 (424)
149 cd01879 FeoB Ferrous iron tran 99.4 7.5E-12 1.6E-16 72.4 8.9 90 4-104 65-156 (158)
150 PRK04213 GTP-binding protein; 99.4 4.6E-12 1E-16 76.3 8.1 101 2-106 77-193 (201)
151 TIGR01393 lepA GTP-binding pro 99.4 6.4E-12 1.4E-16 86.3 9.7 96 1-106 83-181 (595)
152 TIGR00436 era GTP-binding prot 99.4 3.5E-12 7.5E-17 80.2 7.7 92 5-106 73-165 (270)
153 cd01888 eIF2_gamma eIF2-gamma 99.4 2.7E-12 5.9E-17 77.6 7.0 97 5-106 100-200 (203)
154 cd00882 Ras_like_GTPase Ras-li 99.4 1.4E-11 3.1E-16 69.9 9.6 94 4-101 61-156 (157)
155 cd04171 SelB SelB subfamily. 99.4 3.8E-12 8.1E-17 74.0 7.2 92 5-102 68-163 (164)
156 PRK12296 obgE GTPase CgtA; Rev 99.4 4.2E-12 9.2E-17 85.1 8.3 94 8-106 233-341 (500)
157 PRK15467 ethanolamine utilizat 99.4 5.3E-12 1.1E-16 73.6 7.6 88 8-106 61-148 (158)
158 TIGR03156 GTP_HflX GTP-binding 99.4 7.1E-12 1.5E-16 81.3 8.9 86 8-103 265-350 (351)
159 TIGR03594 GTPase_EngA ribosome 99.4 4.7E-12 1E-16 84.1 8.2 94 7-105 250-344 (429)
160 cd01894 EngA1 EngA1 subfamily. 99.4 6.2E-12 1.3E-16 72.5 7.4 88 5-104 70-157 (157)
161 PRK15494 era GTPase Era; Provi 99.3 8.6E-12 1.9E-16 80.7 8.3 90 8-106 128-217 (339)
162 cd04102 RabL3 RabL3 (Rab-like3 99.3 2.1E-11 4.5E-16 73.7 8.2 59 1-59 67-143 (202)
163 PRK11058 GTPase HflX; Provisio 99.3 8E-11 1.7E-15 78.1 11.2 91 8-106 273-363 (426)
164 PRK05433 GTP-binding protein L 99.3 4.6E-11 1E-15 82.2 10.3 95 2-106 88-185 (600)
165 cd00880 Era_like Era (E. coli 99.3 5.3E-11 1.2E-15 68.3 9.1 95 4-103 68-162 (163)
166 PRK05291 trmE tRNA modificatio 99.3 2.3E-11 5E-16 81.3 8.2 82 7-106 290-371 (449)
167 cd01895 EngA2 EngA2 subfamily. 99.3 7E-11 1.5E-15 69.0 9.2 92 7-103 80-173 (174)
168 KOG0393 Ras-related small GTPa 99.3 3.3E-11 7.2E-16 71.9 7.7 100 4-106 69-180 (198)
169 cd01891 TypA_BipA TypA (tyrosi 99.3 3.1E-11 6.6E-16 72.5 7.7 90 1-96 78-173 (194)
170 cd04164 trmE TrmE (MnmE, ThdF, 99.3 9E-11 1.9E-15 67.6 8.7 81 7-104 76-156 (157)
171 PRK12298 obgE GTPase CgtA; Rev 99.3 5.9E-11 1.3E-15 78.0 8.5 97 8-106 234-334 (390)
172 PRK09518 bifunctional cytidyla 99.3 9.1E-11 2E-15 82.3 9.9 95 7-106 528-622 (712)
173 cd01858 NGP_1 NGP-1. Autoanti 99.3 6.3E-11 1.4E-15 69.0 7.8 92 5-104 3-94 (157)
174 PRK00093 GTP-binding protein D 99.2 4.1E-11 8.8E-16 79.8 7.6 94 7-105 251-344 (435)
175 PRK12289 GTPase RsgA; Reviewed 99.2 5E-11 1.1E-15 77.3 7.5 91 4-103 82-173 (352)
176 cd01889 SelB_euk SelB subfamil 99.2 8.2E-11 1.8E-15 70.5 7.8 92 9-105 89-186 (192)
177 PF00009 GTP_EFTU: Elongation 99.2 6.8E-11 1.5E-15 70.7 7.4 96 5-105 87-187 (188)
178 PRK09518 bifunctional cytidyla 99.2 6.8E-11 1.5E-15 82.9 8.1 91 4-106 347-437 (712)
179 smart00275 G_alpha G protein a 99.2 3.9E-10 8.4E-15 73.1 10.6 106 1-106 197-335 (342)
180 PRK00089 era GTPase Era; Revie 99.2 8.4E-11 1.8E-15 74.6 7.5 93 6-106 79-172 (292)
181 TIGR00450 mnmE_trmE_thdF tRNA 99.2 2.8E-10 6E-15 76.0 10.2 86 6-107 277-362 (442)
182 PLN00023 GTP-binding protein; 99.2 8E-11 1.7E-15 75.3 6.9 59 1-59 96-165 (334)
183 cd04105 SR_beta Signal recogni 99.2 7.7E-11 1.7E-15 71.3 6.4 101 2-102 62-202 (203)
184 KOG4252 GTP-binding protein [S 99.2 6.1E-11 1.3E-15 69.5 5.5 98 3-107 84-183 (246)
185 PF02421 FeoB_N: Ferrous iron 99.2 8.2E-11 1.8E-15 68.3 6.0 81 5-100 70-156 (156)
186 KOG1489 Predicted GTP-binding 99.2 1.8E-10 4E-15 72.8 7.9 89 8-103 271-365 (366)
187 cd04163 Era Era subfamily. Er 99.2 1.4E-10 3E-15 67.2 6.9 91 5-103 76-167 (168)
188 cd00066 G-alpha G protein alph 99.2 4.7E-10 1E-14 72.1 9.8 107 1-107 174-313 (317)
189 TIGR03594 GTPase_EngA ribosome 99.2 1.9E-10 4E-15 76.5 8.1 92 3-106 70-161 (429)
190 cd01854 YjeQ_engC YjeQ/EngC. 99.2 1.7E-10 3.6E-15 73.2 7.4 86 8-102 75-161 (287)
191 COG1160 Predicted GTPases [Gen 99.2 3.6E-10 7.7E-15 74.4 8.9 93 8-105 257-351 (444)
192 COG1100 GTPase SAR1 and relate 99.2 6.2E-10 1.3E-14 67.8 9.5 105 1-106 67-186 (219)
193 TIGR00231 small_GTP small GTP- 99.2 6E-10 1.3E-14 63.8 8.7 95 2-101 64-160 (161)
194 PRK00093 GTP-binding protein D 99.1 2.6E-10 5.6E-15 76.0 7.8 88 4-103 73-160 (435)
195 CHL00189 infB translation init 99.1 4.4E-10 9.5E-15 78.7 9.0 98 1-104 308-409 (742)
196 PRK00098 GTPase RsgA; Reviewed 99.1 1.5E-10 3.3E-15 73.7 6.2 85 9-102 78-164 (298)
197 KOG3883 Ras family small GTPas 99.1 5.6E-10 1.2E-14 63.9 7.4 98 4-105 77-175 (198)
198 TIGR00487 IF-2 translation ini 99.1 7.2E-10 1.6E-14 76.2 9.3 96 1-102 148-247 (587)
199 TIGR03680 eif2g_arch translati 99.1 6E-10 1.3E-14 73.8 8.1 97 4-105 96-196 (406)
200 PRK05306 infB translation init 99.1 1E-09 2.3E-14 77.3 9.4 97 1-103 350-450 (787)
201 COG2262 HflX GTPases [General 99.1 2.1E-09 4.6E-14 70.0 10.0 89 10-107 270-358 (411)
202 COG1159 Era GTPase [General fu 99.1 7.2E-10 1.6E-14 69.6 7.5 93 6-106 80-173 (298)
203 TIGR00491 aIF-2 translation in 99.1 1.2E-09 2.6E-14 75.1 9.2 95 1-103 82-214 (590)
204 TIGR03597 GTPase_YqeH ribosome 99.1 1.9E-10 4.1E-15 75.0 5.0 95 2-103 54-151 (360)
205 TIGR00437 feoB ferrous iron tr 99.1 6.3E-10 1.4E-14 76.6 7.7 89 5-104 64-154 (591)
206 PRK13768 GTPase; Provisional 99.1 4E-10 8.7E-15 70.3 6.0 94 12-106 129-248 (253)
207 cd01856 YlqF YlqF. Proteins o 99.1 7.2E-10 1.6E-14 65.4 6.7 88 5-104 13-100 (171)
208 KOG0462 Elongation factor-type 99.1 1.9E-09 4.1E-14 72.5 9.0 91 7-107 144-237 (650)
209 PRK12288 GTPase RsgA; Reviewed 99.1 1E-09 2.2E-14 71.2 7.4 90 9-104 118-207 (347)
210 TIGR03596 GTPase_YlqF ribosome 99.0 8.3E-10 1.8E-14 69.7 6.6 90 5-106 15-104 (276)
211 cd01849 YlqF_related_GTPase Yl 99.0 1.6E-09 3.4E-14 63.0 7.2 83 13-104 1-84 (155)
212 COG1160 Predicted GTPases [Gen 99.0 1.2E-09 2.6E-14 72.0 7.3 87 4-104 76-164 (444)
213 PRK00454 engB GTP-binding prot 99.0 7.2E-10 1.6E-14 66.4 5.9 96 5-106 97-195 (196)
214 cd01857 HSR1_MMR1 HSR1/MMR1. 99.0 3.9E-10 8.4E-15 64.6 4.5 78 7-92 7-84 (141)
215 TIGR00475 selB selenocysteine- 99.0 1.2E-09 2.5E-14 75.2 7.3 96 4-105 66-166 (581)
216 cd01883 EF1_alpha Eukaryotic e 99.0 5.2E-10 1.1E-14 68.5 4.7 87 6-95 95-195 (219)
217 PRK04000 translation initiatio 99.0 4E-09 8.7E-14 70.0 9.0 90 11-105 108-201 (411)
218 PRK09866 hypothetical protein; 99.0 3.3E-09 7.2E-14 73.0 8.0 94 6-102 253-350 (741)
219 PRK10218 GTP-binding protein; 99.0 4.7E-09 1E-13 72.4 8.6 101 1-106 81-196 (607)
220 COG0481 LepA Membrane GTPase L 99.0 8.5E-09 1.8E-13 68.6 9.3 90 8-107 96-188 (603)
221 cd04165 GTPBP1_like GTPBP1-lik 99.0 7.9E-09 1.7E-13 63.5 8.6 86 11-101 109-219 (224)
222 PRK09563 rbgA GTPase YlqF; Rev 99.0 2.3E-09 5.1E-14 68.1 6.2 90 5-106 18-107 (287)
223 TIGR01394 TypA_BipA GTP-bindin 99.0 4.4E-09 9.6E-14 72.5 7.6 100 2-106 78-192 (594)
224 TIGR03598 GTPase_YsxC ribosome 98.9 1.4E-09 3E-14 64.5 3.8 81 6-94 92-179 (179)
225 COG0486 ThdF Predicted GTPase 98.9 1.3E-08 2.9E-13 67.3 8.6 88 6-107 291-378 (454)
226 TIGR00483 EF-1_alpha translati 98.9 4.3E-09 9.3E-14 70.1 6.2 85 8-95 105-197 (426)
227 COG0532 InfB Translation initi 98.9 2.5E-08 5.4E-13 66.9 9.7 88 9-104 76-169 (509)
228 PRK04004 translation initiatio 98.9 3.8E-08 8.3E-13 67.9 10.5 94 1-102 84-215 (586)
229 COG0536 Obg Predicted GTPase [ 98.9 1E-08 2.2E-13 65.6 6.9 97 8-107 234-335 (369)
230 PF10662 PduV-EutP: Ethanolami 98.9 4.9E-09 1.1E-13 59.9 4.7 80 9-101 61-142 (143)
231 cd01876 YihA_EngB The YihA (En 98.9 2E-08 4.3E-13 58.3 7.4 88 11-104 81-170 (170)
232 cd04168 TetM_like Tet(M)-like 98.9 2.2E-08 4.9E-13 62.0 7.7 99 2-105 78-235 (237)
233 cd01896 DRG The developmentall 98.9 2.5E-08 5.5E-13 61.6 7.8 50 45-104 176-225 (233)
234 PRK14845 translation initiatio 98.9 3E-08 6.5E-13 71.8 9.1 93 3-103 541-671 (1049)
235 PRK12317 elongation factor 1-a 98.8 1.2E-08 2.5E-13 68.1 6.6 85 9-96 105-196 (425)
236 PRK10512 selenocysteinyl-tRNA- 98.8 2.3E-08 5E-13 69.3 8.0 92 7-105 70-166 (614)
237 KOG0090 Signal recognition par 98.8 8.8E-08 1.9E-12 57.8 9.4 99 5-104 99-238 (238)
238 PF08477 Miro: Miro-like prote 98.8 7.6E-09 1.6E-13 57.3 4.6 51 4-56 66-119 (119)
239 PRK09554 feoB ferrous iron tra 98.8 3.1E-08 6.7E-13 70.2 8.5 84 10-104 84-167 (772)
240 PTZ00327 eukaryotic translatio 98.8 2.5E-08 5.4E-13 67.0 7.5 92 9-105 138-233 (460)
241 KOG4423 GTP-binding protein-li 98.8 1.4E-08 3.1E-13 60.0 5.2 99 3-105 90-194 (229)
242 KOG0082 G-protein alpha subuni 98.8 1.1E-07 2.4E-12 61.5 9.2 105 2-106 209-345 (354)
243 PRK13796 GTPase YqeH; Provisio 98.7 3.1E-08 6.7E-13 64.9 6.0 88 10-104 67-158 (365)
244 cd01884 EF_Tu EF-Tu subfamily. 98.7 9.4E-08 2E-12 57.6 7.3 82 7-93 84-171 (195)
245 cd04166 CysN_ATPS CysN_ATPS su 98.7 1.2E-07 2.7E-12 57.6 7.2 88 5-96 94-185 (208)
246 KOG0096 GTPase Ran/TC4/GSP1 (n 98.7 2.8E-08 6E-13 58.9 3.9 97 4-107 75-171 (216)
247 PF09439 SRPRB: Signal recogni 98.6 1.2E-07 2.7E-12 56.3 5.9 61 8-68 72-135 (181)
248 PRK01889 GTPase RsgA; Reviewed 98.6 5.5E-07 1.2E-11 58.9 8.9 85 8-101 109-193 (356)
249 TIGR00101 ureG urease accessor 98.6 5E-07 1.1E-11 54.7 7.9 80 12-105 113-196 (199)
250 KOG1145 Mitochondrial translat 98.6 5.1E-07 1.1E-11 61.3 8.2 88 9-104 222-315 (683)
251 PRK13351 elongation factor G; 98.6 1.1E-06 2.3E-11 62.0 10.1 54 2-60 87-140 (687)
252 PRK00741 prfC peptide chain re 98.6 1.2E-06 2.7E-11 59.9 9.5 51 5-60 96-146 (526)
253 COG0370 FeoB Fe2+ transport sy 98.5 5.8E-07 1.3E-11 62.2 7.5 81 11-106 81-165 (653)
254 COG0218 Predicted GTPase [Gene 98.5 1.1E-06 2.4E-11 52.7 7.4 96 4-106 96-198 (200)
255 PRK09435 membrane ATPase/prote 98.5 1.7E-06 3.7E-11 56.1 8.8 89 9-106 167-261 (332)
256 PRK12740 elongation factor G; 98.5 2.5E-06 5.4E-11 60.0 10.0 53 3-60 75-127 (668)
257 PRK12736 elongation factor Tu; 98.5 1.4E-06 3E-11 57.8 8.2 92 9-105 96-201 (394)
258 PF00503 G-alpha: G-protein al 98.5 8.4E-07 1.8E-11 58.7 7.2 103 2-104 250-389 (389)
259 KOG1673 Ras GTPases [General f 98.5 1.1E-06 2.4E-11 50.8 6.3 100 3-105 84-186 (205)
260 PLN00043 elongation factor 1-a 98.4 1.3E-06 2.8E-11 58.8 7.1 86 5-95 102-203 (447)
261 TIGR00073 hypB hydrogenase acc 98.4 7.8E-07 1.7E-11 54.1 5.4 57 45-104 148-206 (207)
262 COG5257 GCD11 Translation init 98.4 8.6E-07 1.9E-11 56.9 5.4 90 12-106 110-203 (415)
263 TIGR00484 EF-G translation elo 98.4 9.3E-06 2E-10 57.4 10.3 52 4-60 91-142 (689)
264 KOG1423 Ras-like GTPase ERA [C 98.4 4E-06 8.7E-11 53.5 7.4 92 8-105 152-271 (379)
265 KOG1532 GTPase XAB1, interacts 98.3 8E-06 1.7E-10 51.6 8.4 91 13-106 149-265 (366)
266 PF06858 NOG1: Nucleolar GTP-b 98.3 3.2E-06 7E-11 40.8 5.1 43 12-56 14-58 (58)
267 CHL00071 tufA elongation facto 98.3 3.2E-06 7E-11 56.3 6.9 80 8-92 95-180 (409)
268 PRK12735 elongation factor Tu; 98.3 7.5E-06 1.6E-10 54.4 8.5 92 8-104 95-202 (396)
269 TIGR00485 EF-Tu translation el 98.3 5.9E-06 1.3E-10 54.8 8.0 78 9-91 96-179 (394)
270 TIGR00503 prfC peptide chain r 98.3 1E-05 2.2E-10 55.5 9.3 50 5-59 97-146 (527)
271 KOG1144 Translation initiation 98.3 2.1E-06 4.5E-11 60.3 5.4 93 8-108 560-690 (1064)
272 PRK00049 elongation factor Tu; 98.3 5.7E-06 1.2E-10 55.0 7.3 92 8-104 95-202 (396)
273 cd01886 EF-G Elongation factor 98.3 3.8E-06 8.3E-11 53.1 6.1 53 3-60 79-131 (270)
274 PTZ00141 elongation factor 1- 98.3 5.6E-06 1.2E-10 55.8 7.2 85 7-95 104-203 (446)
275 TIGR00750 lao LAO/AO transport 98.3 9.8E-06 2.1E-10 52.0 7.9 62 44-105 171-238 (300)
276 KOG1490 GTP-binding protein CR 98.2 2.1E-06 4.6E-11 57.9 4.6 89 14-104 250-340 (620)
277 TIGR02034 CysN sulfate adenyly 98.2 7.6E-06 1.6E-10 54.6 7.2 84 8-95 100-187 (406)
278 KOG1707 Predicted Ras related/ 98.2 1.1E-06 2.4E-11 59.9 3.0 93 6-104 74-174 (625)
279 cd04104 p47_IIGP_like p47 (47- 98.2 1.1E-05 2.3E-10 48.7 6.6 92 9-107 78-186 (197)
280 cd04169 RF3 RF3 subfamily. Pe 98.2 9.3E-06 2E-10 51.3 6.4 53 4-61 87-139 (267)
281 COG1162 Predicted GTPases [Gen 98.2 7.3E-06 1.6E-10 52.2 5.7 89 9-104 77-166 (301)
282 COG4917 EutP Ethanolamine util 98.2 9.4E-06 2E-10 45.4 5.4 83 9-103 62-144 (148)
283 cd01885 EF2 EF2 (for archaea a 98.1 1.2E-05 2.6E-10 49.5 5.9 51 3-58 88-138 (222)
284 PRK12739 elongation factor G; 98.1 3.2E-05 7E-10 54.8 8.7 52 4-60 89-140 (691)
285 PRK05124 cysN sulfate adenylyl 98.1 6.5E-06 1.4E-10 55.9 5.0 83 9-96 128-216 (474)
286 PLN03127 Elongation factor Tu; 98.1 2.4E-05 5.3E-10 52.8 7.3 92 9-105 145-252 (447)
287 COG1163 DRG Predicted GTPase [ 98.0 7.7E-05 1.7E-09 48.1 8.5 50 45-104 239-288 (365)
288 KOG1424 Predicted GTP-binding 98.0 9.6E-06 2.1E-10 54.8 4.1 79 2-89 166-244 (562)
289 PRK05506 bifunctional sulfate 98.0 1.5E-05 3.4E-10 55.8 5.3 84 8-95 124-211 (632)
290 COG1217 TypA Predicted membran 98.0 3.8E-05 8.1E-10 51.8 6.7 94 8-107 88-197 (603)
291 PRK10463 hydrogenase nickel in 98.0 1.3E-05 2.9E-10 51.0 4.0 56 46-104 231-288 (290)
292 cd04167 Snu114p Snu114p subfam 98.0 3.4E-05 7.3E-10 47.1 5.6 51 3-58 86-136 (213)
293 PLN03126 Elongation factor Tu; 97.9 8.5E-05 1.8E-09 50.6 7.1 78 9-91 165-248 (478)
294 COG5256 TEF1 Translation elong 97.9 6.5E-05 1.4E-09 49.8 6.0 81 9-95 106-201 (428)
295 KOG1191 Mitochondrial GTPase [ 97.9 6.1E-05 1.3E-09 50.9 6.0 99 6-106 343-451 (531)
296 smart00010 small_GTPase Small 97.9 2E-05 4.4E-10 43.6 3.2 77 4-94 39-115 (124)
297 PRK00007 elongation factor G; 97.8 0.00034 7.4E-09 49.8 9.7 48 7-59 94-141 (693)
298 COG1084 Predicted GTPase [Gene 97.8 0.00019 4.1E-09 46.3 7.3 85 12-103 248-334 (346)
299 cd04170 EF-G_bact Elongation f 97.8 0.00022 4.7E-09 45.1 7.6 53 3-60 79-131 (268)
300 cd04178 Nucleostemin_like Nucl 97.8 2.4E-05 5.1E-10 46.4 2.6 42 13-59 1-44 (172)
301 COG3276 SelB Selenocysteine-sp 97.8 0.00029 6.3E-09 47.1 7.7 87 9-104 71-161 (447)
302 COG1703 ArgK Putative periplas 97.7 0.00023 5.1E-09 45.5 6.9 87 10-105 163-254 (323)
303 COG0378 HypB Ni2+-binding GTPa 97.7 3.5E-05 7.5E-10 46.3 3.1 55 47-104 144-200 (202)
304 COG1161 Predicted GTPases [Gen 97.7 5.4E-05 1.2E-09 49.1 4.2 84 4-98 27-110 (322)
305 KOG0085 G protein subunit Galp 97.6 9.4E-05 2E-09 45.9 3.9 106 2-107 213-351 (359)
306 PF03029 ATP_bind_1: Conserved 97.6 0.0005 1.1E-08 42.9 7.0 87 12-104 123-236 (238)
307 cd01882 BMS1 Bms1. Bms1 is an 97.6 0.00013 2.8E-09 45.1 4.4 78 8-92 100-183 (225)
308 PF03308 ArgK: ArgK protein; 97.6 4.2E-05 9.2E-10 47.9 1.7 87 10-105 141-230 (266)
309 COG2895 CysN GTPases - Sulfate 97.4 0.0017 3.6E-08 42.7 7.8 79 10-94 108-192 (431)
310 KOG2484 GTPase [General functi 97.3 0.00041 8.9E-09 45.9 4.2 62 6-70 141-202 (435)
311 KOG0461 Selenocysteine-specifi 97.3 0.0013 2.8E-08 43.3 5.9 88 12-104 94-192 (522)
312 cd01899 Ygr210 Ygr210 subfamil 97.3 0.00049 1.1E-08 44.7 3.9 56 45-106 214-270 (318)
313 KOG2423 Nucleolar GTPase [Gene 97.3 0.0021 4.5E-08 43.0 6.8 55 3-60 202-259 (572)
314 PF04670 Gtr1_RagA: Gtr1/RagA 97.2 0.00074 1.6E-08 42.0 4.1 98 4-105 69-176 (232)
315 PF01926 MMR_HSR1: 50S ribosom 97.2 0.0015 3.4E-08 35.8 5.0 40 9-54 77-116 (116)
316 KOG1707 Predicted Ras related/ 97.2 0.0061 1.3E-07 42.4 8.4 84 10-104 494-582 (625)
317 KOG0410 Predicted GTP binding 97.0 0.0017 3.8E-08 42.2 4.8 84 9-106 255-342 (410)
318 KOG0099 G protein subunit Galp 96.8 0.002 4.4E-08 40.9 3.7 56 2-57 216-281 (379)
319 KOG0458 Elongation factor 1 al 96.8 0.0094 2E-07 41.5 7.1 85 9-96 276-373 (603)
320 COG0050 TufB GTPases - transla 96.7 0.008 1.7E-07 38.9 5.9 86 11-104 98-200 (394)
321 smart00053 DYNc Dynamin, GTPas 96.7 0.0075 1.6E-07 37.8 5.5 54 3-60 153-207 (240)
322 TIGR00490 aEF-2 translation el 96.6 0.006 1.3E-07 43.9 5.1 51 4-59 102-152 (720)
323 PF00350 Dynamin_N: Dynamin fa 96.5 0.013 2.8E-07 34.1 5.6 49 3-55 120-168 (168)
324 TIGR02836 spore_IV_A stage IV 96.5 0.018 4E-07 39.0 6.7 47 7-57 139-192 (492)
325 KOG0466 Translation initiation 96.5 0.0016 3.4E-08 42.2 1.5 58 46-105 180-241 (466)
326 PTZ00416 elongation factor 2; 96.5 0.0041 8.9E-08 45.4 3.7 48 6-58 110-157 (836)
327 PRK09602 translation-associate 96.4 0.0076 1.6E-07 40.4 4.6 53 45-104 217-270 (396)
328 cd01852 AIG1 AIG1 (avrRpt2-ind 96.3 0.04 8.7E-07 33.2 7.0 95 8-106 80-185 (196)
329 cd01850 CDC_Septin CDC/Septin. 96.3 0.0094 2E-07 38.1 4.3 44 11-59 114-157 (276)
330 KOG2485 Conserved ATP/GTP bind 96.1 0.015 3.2E-07 37.7 4.4 58 5-69 40-97 (335)
331 COG5258 GTPBP1 GTPase [General 96.1 0.072 1.6E-06 35.9 7.6 60 45-105 255-338 (527)
332 PLN00116 translation elongatio 96.1 0.015 3.3E-07 42.6 5.0 48 6-58 116-163 (843)
333 PRK07560 elongation factor EF- 96.0 0.015 3.3E-07 42.0 4.6 49 5-58 104-152 (731)
334 COG4108 PrfC Peptide chain rel 95.8 0.049 1.1E-06 37.1 6.0 60 8-72 101-163 (528)
335 KOG2486 Predicted GTPase [Gene 95.7 0.0042 9.1E-08 39.6 0.8 85 14-103 222-314 (320)
336 KOG0448 Mitofusin 1 GTPase, in 95.3 0.13 2.7E-06 37.0 6.6 52 4-61 225-277 (749)
337 KOG0460 Mitochondrial translat 95.1 0.087 1.9E-06 35.0 5.3 74 11-88 140-218 (449)
338 COG3596 Predicted GTPase [Gene 95.0 0.067 1.5E-06 34.3 4.3 102 2-106 108-223 (296)
339 COG3640 CooC CO dehydrogenase 95.0 0.095 2.1E-06 32.9 4.9 48 6-58 150-198 (255)
340 COG0523 Putative GTPases (G3E 94.8 0.2 4.3E-06 33.0 6.2 68 11-87 116-184 (323)
341 COG4963 CpaE Flp pilus assembl 94.6 0.52 1.1E-05 31.5 7.9 70 3-74 231-300 (366)
342 KOG1954 Endocytosis/signaling 94.3 0.12 2.5E-06 34.8 4.4 51 5-59 175-225 (532)
343 KOG0705 GTPase-activating prot 94.2 0.073 1.6E-06 37.4 3.5 95 7-105 91-189 (749)
344 cd03112 CobW_like The function 94.1 0.1 2.3E-06 30.4 3.6 42 10-57 117-158 (158)
345 KOG3905 Dynein light intermedi 94.1 0.089 1.9E-06 34.7 3.5 59 45-104 222-289 (473)
346 COG0480 FusA Translation elong 94.0 0.27 5.8E-06 35.6 6.1 50 6-60 94-143 (697)
347 KOG0468 U5 snRNP-specific prot 93.5 0.11 2.4E-06 37.4 3.5 46 7-57 216-261 (971)
348 PF14331 ImcF-related_N: ImcF- 93.3 0.94 2E-05 28.9 7.1 49 11-60 25-84 (266)
349 KOG1143 Predicted translation 92.9 1 2.2E-05 30.6 6.9 55 44-98 302-381 (591)
350 KOG0447 Dynamin-like GTP bindi 92.3 3 6.6E-05 29.9 8.8 55 3-60 440-494 (980)
351 COG1149 MinD superfamily P-loo 92.0 1.3 2.7E-05 28.6 6.3 48 8-60 182-229 (284)
352 cd04170 EF-G_bact Elongation f 91.9 0.26 5.6E-06 31.2 3.4 28 78-105 239-266 (268)
353 PF05783 DLIC: Dynein light in 91.4 0.36 7.8E-06 33.4 3.8 59 45-104 196-263 (472)
354 PF05049 IIGP: Interferon-indu 91.3 1.2 2.7E-05 30.0 6.0 92 9-107 112-220 (376)
355 PF02492 cobW: CobW/HypB/UreG, 90.4 0.49 1.1E-05 28.1 3.3 44 11-60 113-156 (178)
356 cd03110 Fer4_NifH_child This p 90.2 2 4.3E-05 25.4 5.8 49 6-59 109-157 (179)
357 KOG3886 GTP-binding protein [S 89.7 2.4 5.2E-05 27.0 5.9 53 6-60 76-131 (295)
358 cd01886 EF-G Elongation factor 89.6 0.55 1.2E-05 30.0 3.3 28 78-105 241-268 (270)
359 cd02038 FleN-like FleN is a me 87.2 3.8 8.3E-05 23.3 5.8 50 5-57 60-109 (139)
360 cd04169 RF3 RF3 subfamily. Pe 86.6 0.94 2E-05 28.9 2.9 29 78-106 238-266 (267)
361 PF10087 DUF2325: Uncharacteri 84.7 4.4 9.5E-05 21.6 5.4 21 5-25 42-62 (97)
362 PF05014 Nuc_deoxyrib_tr: Nucl 84.4 4.9 0.00011 21.9 5.6 45 7-57 57-101 (113)
363 TIGR02475 CobW cobalamin biosy 84.1 3.3 7.1E-05 27.5 4.6 21 49-69 177-197 (341)
364 COG0012 Predicted GTPase, prob 83.7 2.8 6E-05 28.3 4.1 41 44-89 205-248 (372)
365 KOG0459 Polypeptide release fa 83.6 0.39 8.5E-06 32.7 0.3 53 45-97 217-278 (501)
366 KOG1487 GTP-binding protein DR 83.3 3.6 7.8E-05 26.7 4.3 51 44-104 230-280 (358)
367 TIGR03348 VI_IcmF type VI secr 83.3 9.2 0.0002 29.9 7.2 49 11-60 201-258 (1169)
368 cd03111 CpaE_like This protein 81.9 6.2 0.00013 21.3 5.8 47 6-54 59-106 (106)
369 KOG0463 GTP-binding protein GP 81.4 12 0.00026 25.8 6.3 57 44-100 272-353 (641)
370 PRK13505 formate--tetrahydrofo 81.2 10 0.00023 27.1 6.3 57 44-105 371-429 (557)
371 KOG1486 GTP-binding protein DR 81.1 9.8 0.00021 24.7 5.6 50 45-104 238-287 (364)
372 KOG0467 Translation elongation 80.5 4 8.7E-05 30.3 4.2 46 4-57 88-136 (887)
373 PF00735 Septin: Septin; Inte 79.8 2.7 5.8E-05 27.2 3.0 44 11-59 113-156 (281)
374 PRK14974 cell division protein 79.4 14 0.00031 24.6 6.3 43 47-98 281-323 (336)
375 PTZ00258 GTP-binding protein; 78.5 2.8 6.2E-05 28.5 2.9 15 8-22 112-126 (390)
376 PF03193 DUF258: Protein of un 78.3 3.3 7.2E-05 24.5 2.9 25 78-102 11-35 (161)
377 PRK11537 putative GTP-binding 77.1 4.1 9E-05 26.8 3.3 42 12-59 123-164 (318)
378 KOG0465 Mitochondrial elongati 75.8 12 0.00026 27.3 5.3 51 7-62 123-173 (721)
379 PF08438 MMR_HSR1_C: GTPase of 71.7 1.8 4E-05 23.9 0.6 9 51-59 1-9 (109)
380 TIGR03371 cellulose_yhjQ cellu 71.2 22 0.00047 22.0 5.6 53 4-58 129-181 (246)
381 TIGR00064 ftsY signal recognit 69.8 27 0.00058 22.5 6.9 72 11-99 190-262 (272)
382 cd02036 MinD Bacterial cell di 68.5 21 0.00045 20.7 5.7 50 6-59 79-128 (179)
383 COG1512 Beta-propeller domains 67.2 28 0.0006 22.7 5.2 47 10-57 62-110 (271)
384 COG0431 Predicted flavoprotein 66.2 11 0.00023 22.7 3.1 53 5-58 61-113 (184)
385 PRK09601 GTP-binding protein Y 64.8 13 0.00028 25.2 3.6 15 8-22 93-107 (364)
386 cd01853 Toc34_like Toc34-like 64.5 23 0.00049 22.6 4.5 47 11-59 114-163 (249)
387 TIGR03566 FMN_reduc_MsuE FMN r 63.8 20 0.00043 21.2 4.0 47 7-54 64-110 (174)
388 KOG0465 Mitochondrial elongati 63.2 9 0.0002 27.9 2.7 32 76-107 279-310 (721)
389 KOG1249 Predicted GTPases [Gen 62.8 12 0.00025 26.8 3.2 86 11-103 110-209 (572)
390 PRK13556 azoreductase; Provisi 62.3 29 0.00062 21.2 4.6 48 7-54 85-144 (208)
391 PF11111 CENP-M: Centromere pr 61.1 35 0.00075 20.7 8.0 89 11-106 64-154 (176)
392 PRK00871 glutathione-regulated 60.9 34 0.00074 20.6 5.0 51 6-56 50-108 (176)
393 PRK10416 signal recognition pa 60.9 46 0.001 22.1 6.8 71 11-98 232-303 (318)
394 cd03114 ArgK-like The function 60.6 31 0.00066 19.9 4.5 16 7-22 108-123 (148)
395 TIGR01007 eps_fam capsular exo 59.6 36 0.00079 20.5 5.7 47 8-58 147-193 (204)
396 KOG4273 Uncharacterized conser 58.9 11 0.00024 24.4 2.4 42 13-58 80-122 (418)
397 PF14606 Lipase_GDSL_3: GDSL-l 58.2 29 0.00064 21.0 4.0 47 4-52 50-100 (178)
398 TIGR00991 3a0901s02IAP34 GTP-b 57.6 53 0.0011 21.9 5.3 46 11-58 118-166 (313)
399 PRK13555 azoreductase; Provisi 56.3 46 0.00099 20.6 5.2 48 7-54 85-144 (208)
400 PF11185 DUF2971: Protein of u 54.8 14 0.0003 18.7 2.1 17 4-20 1-17 (90)
401 KOG4530 Predicted flavoprotein 53.1 48 0.001 20.0 4.1 47 4-55 79-128 (199)
402 cd02032 Bchl_like This family 51.6 55 0.0012 20.7 4.7 45 9-57 136-184 (267)
403 PRK00170 azoreductase; Reviewe 50.1 55 0.0012 19.6 4.8 49 7-55 82-142 (201)
404 COG1358 RPL8A Ribosomal protei 49.6 26 0.00057 19.6 2.7 39 12-57 44-82 (116)
405 PF03358 FMN_red: NADPH-depend 49.4 48 0.001 18.8 4.8 51 6-56 65-117 (152)
406 PF04317 DUF463: YcjX-like fam 49.4 72 0.0016 22.5 5.1 59 2-60 246-321 (443)
407 TIGR03567 FMN_reduc_SsuE FMN r 49.4 38 0.00082 20.0 3.5 48 6-54 60-107 (171)
408 PF07764 Omega_Repress: Omega 49.4 20 0.00044 17.6 1.9 19 86-104 44-62 (71)
409 PRK09739 hypothetical protein; 48.9 59 0.0013 19.7 4.9 48 7-54 75-129 (199)
410 PRK10569 NAD(P)H-dependent FMN 47.6 41 0.00089 20.4 3.5 47 6-54 61-108 (191)
411 PRK04930 glutathione-regulated 46.7 66 0.0014 19.6 5.2 48 7-54 57-112 (184)
412 TIGR01968 minD_bact septum sit 45.4 74 0.0016 19.8 5.7 48 6-57 128-175 (261)
413 cd02037 MRP-like MRP (Multiple 44.5 64 0.0014 18.8 5.8 44 10-57 90-133 (169)
414 KOG2743 Cobalamin synthesis pr 44.5 39 0.00085 22.7 3.2 12 12-23 178-189 (391)
415 CHL00175 minD septum-site dete 43.6 86 0.0019 20.0 5.8 48 6-57 143-190 (281)
416 PF09547 Spore_IV_A: Stage IV 42.9 86 0.0019 22.3 4.7 67 26-100 164-232 (492)
417 KOG0469 Elongation factor 2 [T 42.3 25 0.00053 25.4 2.2 47 6-57 116-162 (842)
418 cd07393 MPP_DR1119 Deinococcus 41.0 69 0.0015 20.0 3.9 19 6-24 36-54 (232)
419 TIGR02690 resist_ArsH arsenica 40.1 82 0.0018 19.8 4.0 49 5-53 84-136 (219)
420 PRK13660 hypothetical protein; 40.0 88 0.0019 19.1 4.6 12 9-20 99-110 (182)
421 PF00319 SRF-TF: SRF-type tran 38.9 38 0.00083 15.9 2.0 16 8-23 29-44 (51)
422 KOG3887 Predicted small GTPase 38.8 1.1E+02 0.0024 20.0 9.4 97 6-105 96-202 (347)
423 PTZ00222 60S ribosomal protein 38.4 37 0.00081 21.9 2.4 40 11-57 148-187 (263)
424 PF01656 CbiA: CobQ/CobB/MinD/ 37.8 86 0.0019 18.4 4.7 52 5-58 110-161 (195)
425 cd07390 MPP_AQ1575 Aquifex aeo 37.8 86 0.0019 18.4 4.0 22 5-26 36-57 (168)
426 CHL00072 chlL photochlorophyll 37.7 1.2E+02 0.0025 19.8 5.5 45 9-57 136-184 (290)
427 PTZ00365 60S ribosomal protein 37.6 48 0.001 21.5 2.8 40 11-57 148-187 (266)
428 PF01268 FTHFS: Formate--tetra 37.3 1.6E+02 0.0036 21.5 5.7 56 44-104 370-427 (557)
429 cd03115 SRP The signal recogni 37.3 86 0.0019 18.2 5.3 13 11-23 112-124 (173)
430 cd01900 YchF YchF subfamily. 37.2 34 0.00074 22.2 2.1 15 8-22 89-103 (274)
431 cd02117 NifH_like This family 37.1 98 0.0021 18.8 5.8 47 11-58 141-188 (212)
432 COG5019 CDC3 Septin family pro 36.8 72 0.0016 21.9 3.6 43 11-59 133-176 (373)
433 COG1010 CobJ Precorrin-3B meth 36.6 1.2E+02 0.0025 19.6 4.9 43 9-55 152-197 (249)
434 COG1908 FrhD Coenzyme F420-red 36.5 65 0.0014 18.4 2.9 57 47-106 56-123 (132)
435 PF08468 MTS_N: Methyltransfer 36.5 92 0.002 18.3 5.3 42 10-56 68-109 (155)
436 PF11288 DUF3089: Protein of u 34.6 44 0.00096 20.8 2.3 51 4-55 48-104 (207)
437 KOG3349 Predicted glycosyltran 34.5 95 0.0021 18.6 3.4 12 44-55 99-110 (170)
438 KOG2968 Predicted esterase of 34.3 1.3E+02 0.0029 23.6 4.8 49 3-54 721-769 (1158)
439 PF08925 DUF1907: Domain of Un 34.2 34 0.00074 22.4 1.8 31 79-109 149-179 (284)
440 COG3523 IcmF Type VI protein s 33.9 93 0.002 25.0 4.2 51 9-60 212-271 (1188)
441 COG4108 PrfC Peptide chain rel 33.8 36 0.00079 24.0 1.9 26 80-105 251-276 (528)
442 PRK06756 flavodoxin; Provision 33.1 97 0.0021 17.6 4.4 45 8-53 46-91 (148)
443 COG4474 Uncharacterized protei 33.0 1.2E+02 0.0025 18.5 4.1 19 8-26 126-144 (180)
444 KOG0464 Elongation factor G [T 32.9 9.3 0.0002 26.7 -0.9 51 4-59 118-168 (753)
445 PF09419 PGP_phosphatase: Mito 32.7 1.1E+02 0.0025 18.3 7.8 86 9-101 36-128 (168)
446 PRK13695 putative NTPase; Prov 32.6 1.1E+02 0.0023 17.9 8.5 80 6-105 91-173 (174)
447 PF07015 VirC1: VirC1 protein; 30.7 1.5E+02 0.0032 19.0 4.7 52 6-58 100-153 (231)
448 TIGR01295 PedC_BrcD bacterioci 30.5 1E+02 0.0022 17.1 4.7 11 14-24 26-36 (122)
449 PF03709 OKR_DC_1_N: Orn/Lys/A 30.4 1E+02 0.0022 16.9 5.1 42 11-55 36-77 (115)
450 TIGR01969 minD_arch cell divis 29.4 1.4E+02 0.0031 18.4 5.9 48 6-58 125-173 (251)
451 PF02525 Flavodoxin_2: Flavodo 29.4 1.3E+02 0.0029 18.0 4.1 50 7-56 74-137 (199)
452 PF04034 DUF367: Domain of unk 29.3 89 0.0019 17.9 2.7 36 16-56 24-59 (127)
453 TIGR01425 SRP54_euk signal rec 28.6 2E+02 0.0043 20.3 4.7 41 11-58 212-252 (429)
454 KOG1534 Putative transcription 28.4 1.7E+02 0.0036 18.8 4.3 23 45-67 164-186 (273)
455 PF13651 EcoRI_methylase: Aden 28.3 1.8E+02 0.0039 19.7 4.3 42 6-57 130-171 (336)
456 KOG3929 Uncharacterized conser 28.1 32 0.0007 22.6 0.9 13 45-57 190-202 (363)
457 PF04548 AIG1: AIG1 family; I 27.9 1.5E+02 0.0033 18.1 5.4 51 9-61 81-132 (212)
458 smart00432 MADS MADS domain. 27.6 74 0.0016 15.4 2.0 16 8-23 36-51 (59)
459 PF05729 NACHT: NACHT domain 27.3 1.2E+02 0.0027 17.0 4.6 20 5-24 73-92 (166)
460 PF13401 AAA_22: AAA domain; P 27.0 1.1E+02 0.0025 16.5 4.8 45 7-54 81-125 (131)
461 PRK13185 chlL protochlorophyll 26.8 1.7E+02 0.0037 18.5 5.0 47 9-56 138-185 (270)
462 PF08937 DUF1863: MTH538 TIR-l 26.7 97 0.0021 17.3 2.7 42 6-52 65-106 (130)
463 TIGR01281 DPOR_bchL light-inde 26.4 1.8E+02 0.0038 18.4 5.2 48 9-57 136-184 (268)
464 COG3613 Nucleoside 2-deoxyribo 26.0 1.5E+02 0.0033 18.0 3.4 17 7-23 64-80 (172)
465 PRK07308 flavodoxin; Validated 25.1 1.4E+02 0.0031 16.9 4.5 44 9-53 46-90 (146)
466 PF13570 PQQ_3: PQQ-like domai 24.8 68 0.0015 13.6 1.5 13 9-21 26-38 (40)
467 PRK13507 formate--tetrahydrofo 24.7 2.9E+02 0.0064 20.4 5.4 59 44-105 400-458 (587)
468 PF10740 DUF2529: Protein of u 24.6 1.7E+02 0.0038 17.7 4.9 41 9-56 79-120 (172)
469 cd07379 MPP_239FB Homo sapiens 24.3 1.4E+02 0.003 16.6 4.0 16 10-25 18-33 (135)
470 KOG2655 Septin family protein 24.2 1.2E+02 0.0026 20.9 3.0 44 11-59 129-172 (366)
471 COG2813 RsmC 16S RNA G1207 met 24.0 2.3E+02 0.005 18.9 4.9 44 10-58 36-79 (300)
472 cd00477 FTHFS Formyltetrahydro 23.9 2.9E+02 0.0063 20.1 4.9 59 44-105 355-413 (524)
473 TIGR01753 flav_short flavodoxi 23.9 1.4E+02 0.003 16.4 3.4 46 8-54 42-89 (140)
474 PF06319 DUF1052: Protein of u 23.7 1.1E+02 0.0024 18.3 2.5 20 3-22 78-97 (157)
475 smart00564 PQQ beta-propeller 23.7 66 0.0014 12.6 1.6 15 8-22 10-24 (33)
476 COG0052 RpsB Ribosomal protein 23.2 1.8E+02 0.004 18.8 3.6 38 14-55 36-74 (252)
477 TIGR03677 rpl7ae 50S ribosomal 23.0 1.3E+02 0.0029 16.7 2.7 14 44-57 68-81 (117)
478 cd07388 MPP_Tt1561 Thermus the 22.9 2.1E+02 0.0045 18.0 4.0 44 10-57 30-74 (224)
479 cd00120 MADS MADS: MCM1, Agamo 22.3 84 0.0018 15.2 1.6 16 8-23 36-51 (59)
480 COG3106 Predicted ATPase [Gene 22.2 2.9E+02 0.0062 19.4 4.7 56 3-58 272-344 (467)
481 PRK06703 flavodoxin; Provision 21.4 1.7E+02 0.0038 16.6 4.2 44 9-53 46-90 (151)
482 PF13134 DUF3948: Protein of u 21.1 92 0.002 13.3 1.7 15 47-61 4-18 (35)
483 PF11524 SeleniumBinding: Sele 20.9 1.4E+02 0.0031 15.4 3.0 23 85-108 26-48 (81)
484 PF13344 Hydrolase_6: Haloacid 20.8 49 0.0011 17.7 0.7 39 11-57 4-42 (101)
485 COG4502 5'(3')-deoxyribonucleo 20.4 2.1E+02 0.0045 17.0 4.2 38 16-55 86-125 (180)
No 1
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.91 E-value=1.7e-23 Score=124.29 Aligned_cols=107 Identities=100% Similarity=1.502 Sum_probs=89.8
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcce
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 80 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 80 (110)
|+++|.+|++++|++|+|+|++++.++.....++..++......+.|+++++||+|+.+..+.+++...+++.....+.+
T Consensus 74 ~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~ 153 (181)
T PLN00223 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 153 (181)
T ss_pred HHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCce
Confidence 46789999999999999999999888888888888776654446799999999999987777777777777655555667
Q ss_pred EEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 81 YIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 81 ~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
.++++||++|+|+.++++||.+.+.++
T Consensus 154 ~~~~~Sa~~g~gv~e~~~~l~~~~~~~ 180 (181)
T PLN00223 154 YIQSTCATSGEGLYEGLDWLSNNIANK 180 (181)
T ss_pred EEEeccCCCCCCHHHHHHHHHHHHhhc
Confidence 788999999999999999999988765
No 2
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.91 E-value=4.8e-23 Score=121.80 Aligned_cols=104 Identities=53% Similarity=0.983 Sum_probs=93.0
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCccc-Ccc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR-QRH 79 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~ 79 (110)
+|++|+.|++++|++|||+|+++++.+.++...+..++.+....+.|+++++||+|+.+..+.+++...+.+.... .+.
T Consensus 71 ~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~ 150 (175)
T PF00025_consen 71 FRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRP 150 (175)
T ss_dssp GGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSC
T ss_pred ccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCc
Confidence 5789999999999999999999988899999999998887766789999999999998888888888777766664 678
Q ss_pred eEEEeeecccCCCHHHHHHHHHHHH
Q 044598 80 WYIQSTCATSGEGLYEGLDWLSNNI 104 (110)
Q Consensus 80 ~~~~~~Sa~~~~~i~~l~~~l~~~~ 104 (110)
+.++.|||.+|+|+.+.++||.+++
T Consensus 151 ~~v~~~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 151 WSVFSCSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp EEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred eEEEeeeccCCcCHHHHHHHHHhcC
Confidence 8999999999999999999999864
No 3
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.90 E-value=1.4e-22 Score=119.77 Aligned_cols=105 Identities=84% Similarity=1.381 Sum_probs=87.2
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcce
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 80 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 80 (110)
++.+|..|+++||++|+|+|++++.++++...++..++......+.|+++|+||+|+.+..+.+++...++......+.+
T Consensus 70 ~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~ 149 (175)
T smart00177 70 IRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNW 149 (175)
T ss_pred hHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcE
Confidence 45689999999999999999999988988888888877654445789999999999977666667766666655556677
Q ss_pred EEEeeecccCCCHHHHHHHHHHHHH
Q 044598 81 YIQSTCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 81 ~~~~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
.++++||++|+|++++++||.+.+.
T Consensus 150 ~~~~~Sa~~g~gv~e~~~~l~~~~~ 174 (175)
T smart00177 150 YIQPTCATSGDGLYEGLTWLSNNLK 174 (175)
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHhc
Confidence 7889999999999999999988753
No 4
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=2e-22 Score=116.99 Aligned_cols=107 Identities=78% Similarity=1.275 Sum_probs=99.7
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcce
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 80 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 80 (110)
+|++|++|+++++++|||+|+++.+.+.+....+..++.+.+..+.|+++++||.|++++.+..++...+++....++.+
T Consensus 74 ~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w 153 (181)
T KOG0070|consen 74 LRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNW 153 (181)
T ss_pred cccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCc
Confidence 58999999999999999999999999999999999999888778999999999999999988888988898888888999
Q ss_pred EEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 81 YIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 81 ~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
.+..|+|.+|+|+.+.++|+.+.+.++
T Consensus 154 ~iq~~~a~~G~GL~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 154 HIQSTCAISGEGLYEGLDWLSNNLKKR 180 (181)
T ss_pred EEeeccccccccHHHHHHHHHHHHhcc
Confidence 999999999999999999999988654
No 5
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.89 E-value=1.8e-22 Score=118.67 Aligned_cols=102 Identities=71% Similarity=1.268 Sum_probs=83.7
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcce
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 80 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 80 (110)
|+.+|+.|+++||++++|+|++++.++.+...++.+++......+.|+++|+||+|+.+....+++...+++.......+
T Consensus 66 ~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~ 145 (168)
T cd04149 66 IRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNW 145 (168)
T ss_pred HHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcE
Confidence 35689999999999999999999888888888888877654345789999999999976656666766665544445667
Q ss_pred EEEeeecccCCCHHHHHHHHHH
Q 044598 81 YIQSTCATSGEGLYEGLDWLSN 102 (110)
Q Consensus 81 ~~~~~Sa~~~~~i~~l~~~l~~ 102 (110)
.++++||++|+|++++|+||.+
T Consensus 146 ~~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 146 YVQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred EEEEeeCCCCCChHHHHHHHhc
Confidence 8899999999999999999975
No 6
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.89 E-value=3.8e-22 Score=118.64 Aligned_cols=108 Identities=75% Similarity=1.283 Sum_probs=88.7
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcce
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 80 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 80 (110)
++.+|..|++++|++|+|+|+++++++.+...++.+++......+.|+++|+||.|+.+....+++...++......+.+
T Consensus 74 ~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~ 153 (182)
T PTZ00133 74 LRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNW 153 (182)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcE
Confidence 35689999999999999999999888888888888776554445789999999999976655666666666654545567
Q ss_pred EEEeeecccCCCHHHHHHHHHHHHHhhc
Q 044598 81 YIQSTCATSGEGLYEGLDWLSNNIANKV 108 (110)
Q Consensus 81 ~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 108 (110)
.++++||++|.|++++++||.+.+..++
T Consensus 154 ~~~~~Sa~tg~gv~e~~~~l~~~i~~~~ 181 (182)
T PTZ00133 154 YIQGCCATTAQGLYEGLDWLSANIKKSM 181 (182)
T ss_pred EEEeeeCCCCCCHHHHHHHHHHHHHHhc
Confidence 7889999999999999999999887765
No 7
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.89 E-value=5.2e-22 Score=115.72 Aligned_cols=102 Identities=89% Similarity=1.427 Sum_probs=81.8
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcce
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 80 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 80 (110)
|+++|..|+++||++++|+|.+++.++.+...++.+++......+.|+++++||+|+.+....+++...++.....++.+
T Consensus 57 ~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~ 136 (159)
T cd04150 57 IRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNW 136 (159)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCE
Confidence 35689999999999999999999888888888888776554445689999999999976555555555555444445667
Q ss_pred EEEeeecccCCCHHHHHHHHHH
Q 044598 81 YIQSTCATSGEGLYEGLDWLSN 102 (110)
Q Consensus 81 ~~~~~Sa~~~~~i~~l~~~l~~ 102 (110)
.++++||++|.|++++|+||.+
T Consensus 137 ~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 137 YIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred EEEEeeCCCCCCHHHHHHHHhc
Confidence 8889999999999999999864
No 8
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=4e-22 Score=111.33 Aligned_cols=105 Identities=66% Similarity=1.197 Sum_probs=98.1
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcce
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 80 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 80 (110)
+|++|++||+++.++|||+|+.+.+..++++.++.+++.+..+.+.|+++..||.|++++...+++...+++...+.+.|
T Consensus 74 iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W 153 (180)
T KOG0071|consen 74 IRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNW 153 (180)
T ss_pred hhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCcc
Confidence 48999999999999999999998888999999999999988888999999999999999998999999999888888999
Q ss_pred EEEeeecccCCCHHHHHHHHHHHHH
Q 044598 81 YIQSTCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 81 ~~~~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
-+.++||.+|.|+.+.+.|+...+.
T Consensus 154 ~vqp~~a~~gdgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 154 YVQPSCALSGDGLKEGLSWLSNNLK 178 (180)
T ss_pred EeeccccccchhHHHHHHHHHhhcc
Confidence 9999999999999999999998764
No 9
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.88 E-value=1.6e-21 Score=111.29 Aligned_cols=107 Identities=46% Similarity=0.865 Sum_probs=95.5
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcc-cCcc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRH 79 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~ 79 (110)
+|++|++||+.+|++|||+|.+++.++.+....+.+.+.+....+.|+++++||.|+.++...+.+...+++... .+..
T Consensus 73 lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~ 152 (185)
T KOG0073|consen 73 LRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHH 152 (185)
T ss_pred hHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccC
Confidence 588999999999999999999999899988888888887777778999999999999988888888777776666 6778
Q ss_pred eEEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 80 WYIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 80 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
++++.|||.+|+++.+-+.|+...+.++
T Consensus 153 ~~l~~cs~~tge~l~~gidWL~~~l~~r 180 (185)
T KOG0073|consen 153 WRLVKCSAVTGEDLLEGIDWLCDDLMSR 180 (185)
T ss_pred ceEEEEeccccccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988764
No 10
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.88 E-value=1.8e-21 Score=109.47 Aligned_cols=106 Identities=30% Similarity=0.586 Sum_probs=98.1
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcce
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 80 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 80 (110)
||++|+.|++++++++||+|+.+++.++.++.++.+++..+...++|+++.+||.|++++.+...+.+.+++.....+++
T Consensus 78 frsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREv 157 (186)
T KOG0075|consen 78 FRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREV 157 (186)
T ss_pred HHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceE
Confidence 68899999999999999999999998999999999998887778999999999999999988888888889988888999
Q ss_pred EEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 81 YIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 81 ~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
.++.+||+...|++.+.+|+.++...
T Consensus 158 cC~siScke~~Nid~~~~Wli~hsk~ 183 (186)
T KOG0075|consen 158 CCFSISCKEKVNIDITLDWLIEHSKS 183 (186)
T ss_pred EEEEEEEcCCccHHHHHHHHHHHhhh
Confidence 99999999999999999999998654
No 11
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.87 E-value=7.1e-21 Score=111.88 Aligned_cols=108 Identities=57% Similarity=0.987 Sum_probs=85.1
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcc-cCcc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRH 79 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~ 79 (110)
++++|..+++++|++++|+|.+++.++.+...|+..++......+.|+++|+||+|+.+..+.+++......... ..+.
T Consensus 56 ~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 135 (169)
T cd04158 56 LRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRS 135 (169)
T ss_pred cchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCc
Confidence 456899999999999999999998889888888888876544456899999999999766555655554433221 1234
Q ss_pred eEEEeeecccCCCHHHHHHHHHHHHHhhc
Q 044598 80 WYIQSTCATSGEGLYEGLDWLSNNIANKV 108 (110)
Q Consensus 80 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 108 (110)
+.++++||++|.|++++|+||.+.+....
T Consensus 136 ~~~~~~Sa~~g~gv~~~f~~l~~~~~~~~ 164 (169)
T cd04158 136 WYIQGCDARSGMGLYEGLDWLSRQLVAAG 164 (169)
T ss_pred EEEEeCcCCCCCCHHHHHHHHHHHHhhcc
Confidence 67889999999999999999998876543
No 12
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.5e-21 Score=109.45 Aligned_cols=107 Identities=49% Similarity=0.834 Sum_probs=95.2
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcce
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 80 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 80 (110)
+||+|+.||++.|.+|||+|.++......+..++..++.+.++++..++++.||+|.+......++...++++...++.+
T Consensus 75 irPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~ 154 (182)
T KOG0072|consen 75 IRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIW 154 (182)
T ss_pred ccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhhee
Confidence 58999999999999999999999887777778888888888888899999999999987777777777778777778889
Q ss_pred EEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 81 YIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 81 ~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
.++.+||.+|+|+++.++|+.+.+.++
T Consensus 155 ~Iv~tSA~kg~Gld~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 155 QIVKTSAVKGEGLDPAMDWLQRPLKSR 181 (182)
T ss_pred EEEeeccccccCCcHHHHHHHHHHhcc
Confidence 999999999999999999999988754
No 13
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=3e-21 Score=113.11 Aligned_cols=103 Identities=17% Similarity=0.291 Sum_probs=83.1
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~ 78 (110)
||++..+||++|+++|+|+|.++.++|+....|+.++..... .++|.++|+||+|+.+.. +.++... +. ...
T Consensus 71 Frtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~-~~v~~lLVGNK~Dl~~~~~v~~~~a~~-fa----~~~ 144 (205)
T KOG0084|consen 71 FRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYAS-ENVPKLLVGNKCDLTEKRVVSTEEAQE-FA----DEL 144 (205)
T ss_pred HhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhcc-CCCCeEEEeeccccHhheecCHHHHHH-HH----Hhc
Confidence 678999999999999999999999999999999998866543 568999999999996653 3333222 21 122
Q ss_pred ceE-EEeeecccCCCHHHHHHHHHHHHHhhcC
Q 044598 79 HWY-IQSTCATSGEGLYEGLDWLSNNIANKVG 109 (110)
Q Consensus 79 ~~~-~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 109 (110)
+.+ ++++||+++.|+++.|..|+..+..+++
T Consensus 145 ~~~~f~ETSAK~~~NVe~~F~~la~~lk~~~~ 176 (205)
T KOG0084|consen 145 GIPIFLETSAKDSTNVEDAFLTLAKELKQRKG 176 (205)
T ss_pred CCcceeecccCCccCHHHHHHHHHHHHHHhcc
Confidence 334 8899999999999999999999987765
No 14
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.86 E-value=1e-20 Score=111.04 Aligned_cols=102 Identities=37% Similarity=0.650 Sum_probs=83.5
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCccc---C
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR---Q 77 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~---~ 77 (110)
++++|..|+++||++++|+|++++.++.....++..++......++|+++|+||+|+.+..+..++...+.+.... .
T Consensus 56 ~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~ 135 (167)
T cd04161 56 FRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENK 135 (167)
T ss_pred HHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCC
Confidence 4678999999999999999999988888888888888766444679999999999998777666666665544432 3
Q ss_pred cceEEEeeecccC------CCHHHHHHHHHH
Q 044598 78 RHWYIQSTCATSG------EGLYEGLDWLSN 102 (110)
Q Consensus 78 ~~~~~~~~Sa~~~------~~i~~l~~~l~~ 102 (110)
..+.+++|||++| +|+.+.|+||.+
T Consensus 136 ~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 136 SLCHIEPCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred ceEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence 4578889999998 899999999975
No 15
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.85 E-value=2.8e-20 Score=108.24 Aligned_cols=102 Identities=48% Similarity=0.890 Sum_probs=78.7
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCC--CCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL--RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 78 (110)
|+++|..|++++|++++|+|++++.++.....++..++..... .++|+++|+||+|+.+....+++...++.......
T Consensus 58 ~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~ 137 (162)
T cd04157 58 YRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDK 137 (162)
T ss_pred hHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCc
Confidence 4578999999999999999999887777777777776554322 46999999999999765544555555444332344
Q ss_pred ceEEEeeecccCCCHHHHHHHHHH
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSN 102 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~ 102 (110)
++.++++||++|.|++++++||.+
T Consensus 138 ~~~~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 138 PWHIFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred eEEEEEeeCCCCCchHHHHHHHhc
Confidence 567899999999999999999875
No 16
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.85 E-value=1.8e-20 Score=111.99 Aligned_cols=102 Identities=13% Similarity=0.157 Sum_probs=81.2
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC--CCHHHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~ 78 (110)
|+.+|+.|++++|++|+|+|.+++.++..+..|+..+.... ++.|+++|+||.|+... ...++..... ...
T Consensus 68 ~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~--~~~piilVGNK~DL~~~~~v~~~~~~~~a-----~~~ 140 (189)
T cd04121 68 FCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA--PGVPKILVGNRLHLAFKRQVATEQAQAYA-----ERN 140 (189)
T ss_pred HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccchhccCCCHHHHHHHH-----HHc
Confidence 45789999999999999999999999999988888875442 57999999999999653 2333333322 224
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHHhhcC
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIANKVG 109 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 109 (110)
++++++|||++|.|++++|+++.+.+..+.|
T Consensus 141 ~~~~~e~SAk~g~~V~~~F~~l~~~i~~~~~ 171 (189)
T cd04121 141 GMTFFEVSPLCNFNITESFTELARIVLMRHG 171 (189)
T ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHhcC
Confidence 5689999999999999999999998876543
No 17
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.85 E-value=2.8e-20 Score=109.87 Aligned_cols=101 Identities=52% Similarity=0.942 Sum_probs=81.4
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceE
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWY 81 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 81 (110)
+..|..+++++|++++|+|+++++++.....++..++......+.|+++++||+|+.+..+.+++.+.++........++
T Consensus 73 ~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~ 152 (174)
T cd04153 73 RSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWH 152 (174)
T ss_pred HHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceE
Confidence 46789999999999999999988888777777777766544457999999999999765555666666654444445678
Q ss_pred EEeeecccCCCHHHHHHHHHH
Q 044598 82 IQSTCATSGEGLYEGLDWLSN 102 (110)
Q Consensus 82 ~~~~Sa~~~~~i~~l~~~l~~ 102 (110)
++++||++|.|+++++++|.+
T Consensus 153 ~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 153 IQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred EEecccCCCCCHHHHHHHHhc
Confidence 999999999999999999975
No 18
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.85 E-value=3.8e-20 Score=107.59 Aligned_cols=102 Identities=61% Similarity=1.050 Sum_probs=77.8
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcce
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 80 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 80 (110)
|+++|+.+++++|++++|+|++++.++.....++..+++.....++|+++|+||+|+.+.....++...++.........
T Consensus 56 ~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~ 135 (158)
T cd04151 56 IRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTW 135 (158)
T ss_pred HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcE
Confidence 45689999999999999999998777766666666655443335799999999999976544455554444333333456
Q ss_pred EEEeeecccCCCHHHHHHHHHH
Q 044598 81 YIQSTCATSGEGLYEGLDWLSN 102 (110)
Q Consensus 81 ~~~~~Sa~~~~~i~~l~~~l~~ 102 (110)
+++++||++|.|++++++++.+
T Consensus 136 ~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 136 SIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred EEEEeeccCCCCHHHHHHHHhc
Confidence 8999999999999999999875
No 19
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.85 E-value=3.6e-20 Score=110.30 Aligned_cols=102 Identities=32% Similarity=0.625 Sum_probs=84.4
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCccc-----
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR----- 76 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~----- 76 (110)
+++|..|++++|++++|+|++++.++.....++.++++.....+.|+++|+||+|+....+.+++...+++....
T Consensus 75 ~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~ 154 (184)
T smart00178 75 RRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGK 154 (184)
T ss_pred HHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccc
Confidence 568999999999999999999988888887788777665444679999999999998776777777777654421
Q ss_pred --CcceEEEeeecccCCCHHHHHHHHHHH
Q 044598 77 --QRHWYIQSTCATSGEGLYEGLDWLSNN 103 (110)
Q Consensus 77 --~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 103 (110)
.+.+.+++|||++|+|++++++||.+.
T Consensus 155 ~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 155 VGVRPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred cCCceeEEEEeecccCCChHHHHHHHHhh
Confidence 256789999999999999999999764
No 20
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.85 E-value=3.6e-20 Score=109.19 Aligned_cols=102 Identities=48% Similarity=0.914 Sum_probs=80.9
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcce
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 80 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 80 (110)
++++|..+++++|++++|+|++++.++.....++..++......+.|+++|+||+|+.+....+++...+.........+
T Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 150 (173)
T cd04154 71 LRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHW 150 (173)
T ss_pred HHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCce
Confidence 35689999999999999999999888887777777776543345799999999999976555556555554432334567
Q ss_pred EEEeeecccCCCHHHHHHHHHH
Q 044598 81 YIQSTCATSGEGLYEGLDWLSN 102 (110)
Q Consensus 81 ~~~~~Sa~~~~~i~~l~~~l~~ 102 (110)
+++++||++|+|++++++++.+
T Consensus 151 ~~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 151 RIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred EEEeccCCCCcCHHHHHHHHhc
Confidence 8999999999999999999864
No 21
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.84 E-value=7.9e-20 Score=110.22 Aligned_cols=103 Identities=17% Similarity=0.171 Sum_probs=77.5
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~ 78 (110)
|+++|..|+++||++|+|+|.+++.+++.+..|+..+... ...+.|+++|+||+|+.... ..++..+... ...
T Consensus 62 ~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~-~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~----~~~ 136 (202)
T cd04120 62 FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREISRQQGEKFAQ----QIT 136 (202)
T ss_pred hHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHH----hcC
Confidence 5678999999999999999999999999988877654332 23579999999999996432 2222211110 012
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHHhhc
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIANKV 108 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 108 (110)
.+.++++||++|.|++++|.++.+.+.+..
T Consensus 137 ~~~~~etSAktg~gV~e~F~~l~~~~~~~~ 166 (202)
T cd04120 137 GMRFCEASAKDNFNVDEIFLKLVDDILKKM 166 (202)
T ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHhC
Confidence 357899999999999999999998886543
No 22
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.83 E-value=2e-19 Score=104.55 Aligned_cols=101 Identities=41% Similarity=0.786 Sum_probs=78.7
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCccc-Ccce
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR-QRHW 80 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~ 80 (110)
+.+|..+++++|++++|+|++++.++.....++..++......+.|+++|+||+|+......+++...+...... ...+
T Consensus 58 ~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~ 137 (160)
T cd04156 58 RTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDW 137 (160)
T ss_pred HHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcE
Confidence 467888999999999999999888788877888877765444579999999999996554455555444332222 2456
Q ss_pred EEEeeecccCCCHHHHHHHHHH
Q 044598 81 YIQSTCATSGEGLYEGLDWLSN 102 (110)
Q Consensus 81 ~~~~~Sa~~~~~i~~l~~~l~~ 102 (110)
+++++||++|+|+++++++|.+
T Consensus 138 ~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 138 YVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred EEEecccccCCChHHHHHHHhc
Confidence 7899999999999999999864
No 23
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=1e-19 Score=107.72 Aligned_cols=102 Identities=20% Similarity=0.294 Sum_probs=81.3
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~ 78 (110)
|+.+..+||++|+++++|||.++..+++....|+..+-++.. .+.|.++|+||+|+.... +.+. .+.+ ....
T Consensus 74 f~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~-~~v~~~LvGNK~D~~~~R~V~~e~-ge~l----A~e~ 147 (207)
T KOG0078|consen 74 FRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHAS-DDVVKILVGNKCDLEEKRQVSKER-GEAL----AREY 147 (207)
T ss_pred HHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCC-CCCcEEEeeccccccccccccHHH-HHHH----HHHh
Confidence 577889999999999999999999999999998877755543 589999999999997632 2222 1222 1234
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHHhhc
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIANKV 108 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 108 (110)
++.++++||++|.||++.|..|++.+.++.
T Consensus 148 G~~F~EtSAk~~~NI~eaF~~La~~i~~k~ 177 (207)
T KOG0078|consen 148 GIKFFETSAKTNFNIEEAFLSLARDILQKL 177 (207)
T ss_pred CCeEEEccccCCCCHHHHHHHHHHHHHhhc
Confidence 568899999999999999999999988654
No 24
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=6.7e-20 Score=107.10 Aligned_cols=100 Identities=18% Similarity=0.275 Sum_probs=81.3
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC--CCHHHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~ 78 (110)
|+++-+.||++|+++|+|+|.++.++|..++.|+.++..... ++.-+.+|+||+|+... ...++.... ....
T Consensus 67 y~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea~~y-----Ae~~ 140 (200)
T KOG0092|consen 67 YHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERREVEFEEAQAY-----AESQ 140 (200)
T ss_pred ccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcccccHHHHHHH-----HHhc
Confidence 567889999999999999999999999999999998765543 66778889999999763 344443332 1235
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
+..++++||++|.|++++|..|.+.+..
T Consensus 141 gll~~ETSAKTg~Nv~~if~~Ia~~lp~ 168 (200)
T KOG0092|consen 141 GLLFFETSAKTGENVNEIFQAIAEKLPC 168 (200)
T ss_pred CCEEEEEecccccCHHHHHHHHHHhccC
Confidence 6689999999999999999999998864
No 25
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.83 E-value=5.2e-19 Score=105.23 Aligned_cols=106 Identities=46% Similarity=0.784 Sum_probs=80.1
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCccc-Ccc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR-QRH 79 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~ 79 (110)
|+++|..++++||++++|+|++++.++.....++..+.......+.|+++|+||+|+.+....+++....+..... ...
T Consensus 65 ~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~ 144 (183)
T cd04152 65 LRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTP 144 (183)
T ss_pred HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCc
Confidence 4578999999999999999999987787777777666544333579999999999987654444444443332221 234
Q ss_pred eEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 80 WYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 80 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
.+++++||++|+|++++++++.+.+.+
T Consensus 145 ~~~~~~SA~~~~gi~~l~~~l~~~l~~ 171 (183)
T cd04152 145 WHVQPACAIIGEGLQEGLEKLYEMILK 171 (183)
T ss_pred eEEEEeecccCCCHHHHHHHHHHHHHH
Confidence 678899999999999999999988753
No 26
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.82 E-value=4.5e-19 Score=105.84 Aligned_cols=103 Identities=33% Similarity=0.658 Sum_probs=81.1
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcc------
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL------ 75 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~------ 75 (110)
+.+|..++++++++++|+|.++..++.....++..++......+.|+++++||+|+......+++...++....
T Consensus 77 ~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (190)
T cd00879 77 RRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGV 156 (190)
T ss_pred HHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccc
Confidence 46788999999999999999988778777778877776544467999999999999766666666665543221
Q ss_pred -----cCcceEEEeeecccCCCHHHHHHHHHHHH
Q 044598 76 -----RQRHWYIQSTCATSGEGLYEGLDWLSNNI 104 (110)
Q Consensus 76 -----~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 104 (110)
....+.+++|||++|+|++++|+|+.+.+
T Consensus 157 ~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 157 SLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred cccccCceeEEEEEeEecCCCChHHHHHHHHhhC
Confidence 12346789999999999999999998753
No 27
>PTZ00099 rab6; Provisional
Probab=99.82 E-value=4.3e-19 Score=105.03 Aligned_cols=100 Identities=21% Similarity=0.326 Sum_probs=77.3
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~ 78 (110)
|+.+|..|+++||++|+|+|.+++.++.....|+..+..... .+.|+++|+||+|+.... ..++..... ...
T Consensus 42 ~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~-~~~piilVgNK~DL~~~~~v~~~e~~~~~-----~~~ 115 (176)
T PTZ00099 42 FRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG-KDVIIALVGNKTDLGDLRKVTYEEGMQKA-----QEY 115 (176)
T ss_pred hhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEECcccccccCCCHHHHHHHH-----HHc
Confidence 456889999999999999999999899888888887765432 468999999999985432 222322211 123
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
+..++++||++|.|++++|.++.+.+.+
T Consensus 116 ~~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 116 NTMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4468899999999999999999998865
No 28
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.82 E-value=3.1e-19 Score=107.47 Aligned_cols=99 Identities=16% Similarity=0.213 Sum_probs=77.6
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC-CHHHHHhhhCCCcccCcc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRH 79 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 79 (110)
|+.+|..|+++++++|+|+|+++..++.....|+..+.... .+.|+++|+||+|+.... ..+.. .. .....
T Consensus 57 ~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~-~~-----~~~~~ 128 (200)
T smart00176 57 FGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVKDRKVKAKSI-TF-----HRKKN 128 (200)
T ss_pred hhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCHHHH-HH-----HHHcC
Confidence 46789999999999999999999989988888877775432 479999999999985432 22221 11 12345
Q ss_pred eEEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 80 WYIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 80 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
+.+++|||++|+|++++|.++.+.+...
T Consensus 129 ~~~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 129 LQYYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 6889999999999999999999988654
No 29
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.81 E-value=9.3e-19 Score=102.52 Aligned_cols=100 Identities=44% Similarity=0.705 Sum_probs=79.0
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcc-cCcc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRH 79 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~ 79 (110)
|+++|..|+++||++++|+|.+++.++.....|+..+.... .++|+++|+||+|+......+++...++.... ...+
T Consensus 57 ~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~ 134 (164)
T cd04162 57 LRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRR 134 (164)
T ss_pred hhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCc
Confidence 46789999999999999999999888888888887776442 57999999999999776655555545444333 3456
Q ss_pred eEEEeeeccc------CCCHHHHHHHHHH
Q 044598 80 WYIQSTCATS------GEGLYEGLDWLSN 102 (110)
Q Consensus 80 ~~~~~~Sa~~------~~~i~~l~~~l~~ 102 (110)
+.++++||++ ++|+.++|..+..
T Consensus 135 ~~~~~~Sa~~~~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 135 WILQGTSLDDDGSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred eEEEEeeecCCCChhHHHHHHHHHHHHhc
Confidence 7888888888 9999999987753
No 30
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.81 E-value=7.7e-19 Score=103.58 Aligned_cols=102 Identities=20% Similarity=0.206 Sum_probs=76.4
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~ 78 (110)
|+++|+.|++++|++++|+|.+++.++.....|+..+.......+.|+++|+||+|+.+.. +.++.... ....
T Consensus 63 ~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~-----a~~~ 137 (172)
T cd04141 63 FTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNL-----AREF 137 (172)
T ss_pred hHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHH-----HHHh
Confidence 4678999999999999999999999998887665544332222579999999999985432 22222211 1223
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
++++++|||++|.|++++|+++.+.+.++
T Consensus 138 ~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~ 166 (172)
T cd04141 138 NCPFFETSAALRHYIDDAFHGLVREIRRK 166 (172)
T ss_pred CCEEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 56899999999999999999999887653
No 31
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.80 E-value=2.3e-18 Score=100.01 Aligned_cols=101 Identities=57% Similarity=1.083 Sum_probs=80.9
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceE
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWY 81 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 81 (110)
+.+|..+++++|++++|+|+++++++.....++..+.......+.|+++++||+|+......+++...++........++
T Consensus 57 ~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (158)
T cd00878 57 RPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWH 136 (158)
T ss_pred HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEE
Confidence 46789999999999999999998888888778877766544457999999999999766555555555544323345678
Q ss_pred EEeeecccCCCHHHHHHHHHH
Q 044598 82 IQSTCATSGEGLYEGLDWLSN 102 (110)
Q Consensus 82 ~~~~Sa~~~~~i~~l~~~l~~ 102 (110)
++++||++|.|+++++++|..
T Consensus 137 ~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 137 IQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred EEEeeCCCCCCHHHHHHHHhh
Confidence 999999999999999999875
No 32
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.80 E-value=1.9e-18 Score=104.12 Aligned_cols=103 Identities=19% Similarity=0.190 Sum_probs=77.9
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcC---CCCCCCeEEEEeeCCCCCC--CCCHHHHHhhhCCCcc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNE---DELRDAVLLVFANKQDLPN--AMNAAEITDKLGLHSL 75 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~iiv~nK~Dl~~--~~~~~~~~~~~~~~~~ 75 (110)
|+.+|+.|+++++++|+|+|.+++.++.....|+..+... ....+.|+++|+||+|+.+ ....+++.+...
T Consensus 63 ~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~---- 138 (201)
T cd04107 63 FGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCK---- 138 (201)
T ss_pred hhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHH----
Confidence 4678999999999999999999999998887776655322 1224689999999999963 333444433321
Q ss_pred cCcc-eEEEeeecccCCCHHHHHHHHHHHHHhhc
Q 044598 76 RQRH-WYIQSTCATSGEGLYEGLDWLSNNIANKV 108 (110)
Q Consensus 76 ~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 108 (110)
..+ ..++++||++|.|++++|+++.+.+.+..
T Consensus 139 -~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~~~~ 171 (201)
T cd04107 139 -ENGFIGWFETSAKEGINIEEAMRFLVKNILAND 171 (201)
T ss_pred -HcCCceEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 122 47899999999999999999999886543
No 33
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.80 E-value=2e-18 Score=101.00 Aligned_cols=101 Identities=35% Similarity=0.731 Sum_probs=77.9
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCc--ccCcc
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS--LRQRH 79 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~ 79 (110)
+.+|..+++++|++++|+|++++.++.....++..+.+.....+.|+++++||+|+.+....+++...+.... .....
T Consensus 64 ~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (167)
T cd04160 64 RSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRD 143 (167)
T ss_pred HHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCc
Confidence 4578899999999999999998877777777777776654445799999999999976655455444432211 22345
Q ss_pred eEEEeeecccCCCHHHHHHHHHH
Q 044598 80 WYIQSTCATSGEGLYEGLDWLSN 102 (110)
Q Consensus 80 ~~~~~~Sa~~~~~i~~l~~~l~~ 102 (110)
++++++||++|+|++++++||.+
T Consensus 144 ~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 144 CLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred eEEEEeeCCCCcCHHHHHHHHhc
Confidence 68999999999999999999975
No 34
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.80 E-value=2.8e-18 Score=100.47 Aligned_cols=100 Identities=19% Similarity=0.241 Sum_probs=76.8
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~ 78 (110)
|+.+++.+++++|++++|+|++++.++.....|+..+.... .++.|+++|+||+|+.+.. ..++..... ...
T Consensus 64 ~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~-----~~~ 137 (166)
T cd04122 64 FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIFLIGNKADLEAQRDVTYEEAKQFA-----DEN 137 (166)
T ss_pred HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCcCHHHHHHHH-----HHc
Confidence 35678899999999999999999999988888887764432 2568999999999996543 223333221 123
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
+++++++||++|+|++++|.++.+.+.+
T Consensus 138 ~~~~~e~Sa~~~~~i~e~f~~l~~~~~~ 165 (166)
T cd04122 138 GLLFLECSAKTGENVEDAFLETAKKIYQ 165 (166)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4589999999999999999999887643
No 35
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.79 E-value=2.2e-18 Score=101.99 Aligned_cols=101 Identities=14% Similarity=0.281 Sum_probs=77.4
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCcc
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRH 79 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~ 79 (110)
+.++..+++++|++++|+|+++++++.....|+..+.......+.|+++|+||+|+.+.. ..++..... ...+
T Consensus 77 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~-----~~~~ 151 (180)
T cd04127 77 RSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALA-----DKYG 151 (180)
T ss_pred HHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHH-----HHcC
Confidence 457889999999999999999999999888888776544333578999999999986432 222322221 1123
Q ss_pred eEEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 80 WYIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 80 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
.+++++||++|.|++++++++.+.+.++
T Consensus 152 ~~~~e~Sak~~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 152 IPYFETSAATGTNVEKAVERLLDLVMKR 179 (180)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 4789999999999999999999887654
No 36
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.79 E-value=1.9e-18 Score=102.23 Aligned_cols=98 Identities=8% Similarity=0.056 Sum_probs=74.1
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHH-HHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC------------CHHHHH
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEA-RDELHRMLNEDELRDAVLLVFANKQDLPNAM------------NAAEIT 67 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~------------~~~~~~ 67 (110)
|+.++..|+++++++|+|+|.+++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.. ..++..
T Consensus 62 ~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~ 139 (176)
T cd04133 62 YNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGE 139 (176)
T ss_pred ccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHH
Confidence 467888999999999999999999999887 56777765432 469999999999995431 222221
Q ss_pred hhhCCCcccCcce-EEEeeecccCCCHHHHHHHHHHHHH
Q 044598 68 DKLGLHSLRQRHW-YIQSTCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 68 ~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
.. ....+. .+++|||++|.|++++|+.+.+.+.
T Consensus 140 ~~-----a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~~~ 173 (176)
T cd04133 140 EL-----RKQIGAAAYIECSSKTQQNVKAVFDAAIKVVL 173 (176)
T ss_pred HH-----HHHcCCCEEEECCCCcccCHHHHHHHHHHHHh
Confidence 11 112233 6889999999999999999998764
No 37
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=8.1e-19 Score=102.94 Aligned_cols=104 Identities=17% Similarity=0.268 Sum_probs=82.7
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcce
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 80 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 80 (110)
||.+.++|++++.++|+|+|.++..+++....|+.++..+....+.-+++|+||.||.+........ +....+..+.
T Consensus 84 FrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eE---g~~kAkel~a 160 (221)
T KOG0094|consen 84 FRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEE---GERKAKELNA 160 (221)
T ss_pred HhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHH---HHHHHHHhCc
Confidence 6889999999999999999999999999999999999877654467899999999997654221111 1111123345
Q ss_pred EEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 81 YIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 81 ~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
.+.++||+.|.||.++|..+...+...
T Consensus 161 ~f~etsak~g~NVk~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 161 EFIETSAKAGENVKQLFRRIAAALPGM 187 (221)
T ss_pred EEEEecccCCCCHHHHHHHHHHhccCc
Confidence 788999999999999999999887654
No 38
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.79 E-value=3.7e-18 Score=99.67 Aligned_cols=100 Identities=19% Similarity=0.229 Sum_probs=76.4
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~ 78 (110)
|+++|+.+++++|++++|+|.+++.++.....|+..+.......+.|+++|+||+|+.+.. ..++..... ...
T Consensus 62 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~ 136 (164)
T cd04175 62 FTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLA-----RQW 136 (164)
T ss_pred chhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHH-----HHh
Confidence 4678899999999999999999988888888787777654334579999999999996532 222211111 112
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHH
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
.++++++||++|.|+++++.++.+.+.
T Consensus 137 ~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 163 (164)
T cd04175 137 GCAFLETSAKAKINVNEIFYDLVRQIN 163 (164)
T ss_pred CCEEEEeeCCCCCCHHHHHHHHHHHhh
Confidence 357899999999999999999998763
No 39
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.79 E-value=4.2e-18 Score=99.89 Aligned_cols=100 Identities=15% Similarity=0.172 Sum_probs=76.6
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceE
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWY 81 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 81 (110)
..++..++..+|++|+|+|.++++++.....|+..+.... .+.|+++|+||+|+.......+.... ......+
T Consensus 63 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~~-----~~~~~~~ 135 (166)
T cd00877 63 GGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVC--GNIPIVLCGNKVDIKDRKVKAKQITF-----HRKKNLQ 135 (166)
T ss_pred ccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhcccccCCHHHHHH-----HHHcCCE
Confidence 4567889999999999999999988888877777765442 37999999999998643321221111 1234567
Q ss_pred EEeeecccCCCHHHHHHHHHHHHHhhc
Q 044598 82 IQSTCATSGEGLYEGLDWLSNNIANKV 108 (110)
Q Consensus 82 ~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 108 (110)
++++||++|+|++++|++|.+.+.+..
T Consensus 136 ~~e~Sa~~~~~v~~~f~~l~~~~~~~~ 162 (166)
T cd00877 136 YYEISAKSNYNFEKPFLWLARKLLGNP 162 (166)
T ss_pred EEEEeCCCCCChHHHHHHHHHHHHhcc
Confidence 999999999999999999999887643
No 40
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.79 E-value=3.1e-18 Score=102.55 Aligned_cols=103 Identities=16% Similarity=0.166 Sum_probs=74.1
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHH-HHHHHHhcCCCCCCCeEEEEeeCCCCCCCCC-HHHHHhhhCCCc----
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHS---- 74 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~-~~~~~~~~~~~~---- 74 (110)
|+++|+.|+++||++|+|+|.+++.+++.+. .|...+... ..+.|+++|+||+|+.+... .+.+.+ .....
T Consensus 64 ~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~-~~~~~v~~~ 140 (191)
T cd01875 64 YDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHH--CPNVPILLVGTKKDLRNDADTLKKLKE-QGQAPITPQ 140 (191)
T ss_pred hhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEeChhhhcChhhHHHHhh-ccCCCCCHH
Confidence 4678999999999999999999999998886 455544432 24799999999999964321 111111 00000
Q ss_pred -----ccCcc-eEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 75 -----LRQRH-WYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 75 -----~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
....+ ++++++||++|.|++++|+++.+.+..
T Consensus 141 ~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 141 QGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred HHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHhc
Confidence 01122 579999999999999999999988754
No 41
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.78 E-value=7.2e-18 Score=99.17 Aligned_cols=101 Identities=51% Similarity=0.909 Sum_probs=79.5
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceE
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWY 81 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 81 (110)
...|..+++++|++++|+|.++..++.....++..........+.|+++++||+|+.+....+++...+++.....+.++
T Consensus 72 ~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~ 151 (173)
T cd04155 72 RPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWH 151 (173)
T ss_pred HHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEE
Confidence 34678889999999999999987777777767766655433357999999999998765555566666665545556677
Q ss_pred EEeeecccCCCHHHHHHHHHH
Q 044598 82 IQSTCATSGEGLYEGLDWLSN 102 (110)
Q Consensus 82 ~~~~Sa~~~~~i~~l~~~l~~ 102 (110)
++++||++|+|++++++||.+
T Consensus 152 ~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 152 IQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred EEEeECCCCCCHHHHHHHHhc
Confidence 889999999999999999975
No 42
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=2.7e-19 Score=103.15 Aligned_cols=107 Identities=37% Similarity=0.748 Sum_probs=90.7
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCc-ccCcc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS-LRQRH 79 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~ 79 (110)
.|++|..||..|+++||++|+++++.++.....+.+++.+....+.|+++.+||.|+.+....+++...++... ...+.
T Consensus 82 lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd 161 (197)
T KOG0076|consen 82 LRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRD 161 (197)
T ss_pred HHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCcc
Confidence 37899999999999999999999999988888888888777778999999999999988877777776665322 23455
Q ss_pred eEEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 80 WYIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 80 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
.++.++||.+|+||.+...|+...+.+.
T Consensus 162 ~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 162 NPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred CccccchhhhcccHHHHHHHHHHHHhhc
Confidence 6888999999999999999999988654
No 43
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.78 E-value=7.9e-18 Score=102.68 Aligned_cols=105 Identities=18% Similarity=0.227 Sum_probs=75.9
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC--------------------
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-------------------- 60 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~-------------------- 60 (110)
|+.++..|++++|++|+|+|.+++.++..+..|+..+.... ..+.|+++|+||+|+.+.
T Consensus 57 ~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~-~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r 135 (220)
T cd04126 57 FHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTA-NEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQR 135 (220)
T ss_pred chhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccccccccccccccccccc
Confidence 46788999999999999999999999998888887765432 256899999999998641
Q ss_pred -CCHHHHHhh---hCCC-----ccc-CcceEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 61 -MNAAEITDK---LGLH-----SLR-QRHWYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 61 -~~~~~~~~~---~~~~-----~~~-~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
...++.... .+.. ... ....++++|||++|.|++++|..+++.+..
T Consensus 136 ~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~ 191 (220)
T cd04126 136 QVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLP 191 (220)
T ss_pred cCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 112222111 1100 000 112578999999999999999999987754
No 44
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.78 E-value=6.5e-18 Score=98.36 Aligned_cols=99 Identities=20% Similarity=0.228 Sum_probs=74.7
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~ 78 (110)
|+.+|..|++++|++++|+|.+++.+++....|+..+.......+.|+++|+||+|+.+.. ..++..... ...
T Consensus 62 ~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~ 136 (163)
T cd04136 62 FTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALA-----RQW 136 (163)
T ss_pred cchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHH-----HHc
Confidence 4678899999999999999999988888887777776554333578999999999985432 222211111 112
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHH
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNI 104 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~ 104 (110)
..+++++||++|.|+++++.++.+.+
T Consensus 137 ~~~~~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 137 GCPFYETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred CCeEEEecCCCCCCHHHHHHHHHHhc
Confidence 25789999999999999999998764
No 45
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.78 E-value=1.6e-17 Score=95.91 Aligned_cols=102 Identities=31% Similarity=0.602 Sum_probs=78.5
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcce
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 80 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 80 (110)
|+.+|..+++++|++++|+|++++.++.....++..+.......++|+++|+||+|+.+.....++....+........+
T Consensus 57 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 136 (159)
T cd04159 57 FRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREV 136 (159)
T ss_pred HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCce
Confidence 35678999999999999999998877777777777776544445789999999999876544444444444333334557
Q ss_pred EEEeeecccCCCHHHHHHHHHH
Q 044598 81 YIQSTCATSGEGLYEGLDWLSN 102 (110)
Q Consensus 81 ~~~~~Sa~~~~~i~~l~~~l~~ 102 (110)
+++++||++|.|++++++++.+
T Consensus 137 ~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 137 SCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred EEEEEEeccCCChHHHHHHHhh
Confidence 8899999999999999999875
No 46
>PTZ00369 Ras-like protein; Provisional
Probab=99.77 E-value=1.2e-17 Score=99.77 Aligned_cols=102 Identities=17% Similarity=0.175 Sum_probs=77.3
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~ 78 (110)
|+.+|..|+++++++++|+|++++.++.....|+..+.......+.|+++|+||+|+.+.. ...+..... ...
T Consensus 66 ~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~-----~~~ 140 (189)
T PTZ00369 66 YSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELA-----KSF 140 (189)
T ss_pred chhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHH-----HHh
Confidence 4568899999999999999999998888888777766544333578999999999985432 222221111 112
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
..+++++||++|.|++++|.++.+.+.+.
T Consensus 141 ~~~~~e~Sak~~~gi~~~~~~l~~~l~~~ 169 (189)
T PTZ00369 141 GIPFLETSAKQRVNVDEAFYELVREIRKY 169 (189)
T ss_pred CCEEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 35789999999999999999999888654
No 47
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.77 E-value=6.5e-18 Score=103.09 Aligned_cols=99 Identities=16% Similarity=0.182 Sum_probs=77.2
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC-CHHHHHhhhCCCcccCcc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRH 79 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 79 (110)
|+.+|..|+++++++|+|+|.+++.++.....|+..+... ..+.|+++|+||+|+.... ..+++ .. .....
T Consensus 75 ~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~--~~~~piilvgNK~Dl~~~~v~~~~~-~~-----~~~~~ 146 (219)
T PLN03071 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-TF-----HRKKN 146 (219)
T ss_pred hhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEEchhhhhccCCHHHH-HH-----HHhcC
Confidence 4578899999999999999999999998888888776543 2579999999999985432 22222 11 12244
Q ss_pred eEEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 80 WYIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 80 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
++++++||++|.|++++|.++.+.+...
T Consensus 147 ~~~~e~SAk~~~~i~~~f~~l~~~~~~~ 174 (219)
T PLN03071 147 LQYYEISAKSNYNFEKPFLYLARKLAGD 174 (219)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHHHHHcC
Confidence 6789999999999999999999888654
No 48
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.77 E-value=9.9e-18 Score=97.75 Aligned_cols=99 Identities=17% Similarity=0.208 Sum_probs=74.5
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCC--HHHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~ 78 (110)
|+.+|..|++++|++++|+|.+++.++.+...|+..+.......++|+++|+||+|+.+... ..+. ..+. ...
T Consensus 62 ~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~-~~~~----~~~ 136 (163)
T cd04176 62 FASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEG-RALA----EEW 136 (163)
T ss_pred ccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHH-HHHH----HHh
Confidence 46789999999999999999999988888877777665443335799999999999854322 1121 1111 112
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHH
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNI 104 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~ 104 (110)
+.+++++||++|.|+++++.++.+.+
T Consensus 137 ~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 137 GCPFMETSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred CCEEEEecCCCCCCHHHHHHHHHHhc
Confidence 34788999999999999999998764
No 49
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=2.6e-18 Score=100.20 Aligned_cols=101 Identities=21% Similarity=0.284 Sum_probs=80.8
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~ 78 (110)
||+..++||++|.++|+|+|.++.++|..+..|+.++.++.. .+..+++++||+|+.... ..++-... ....
T Consensus 68 frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~-~NmvImLiGNKsDL~~rR~Vs~EEGeaF-----A~eh 141 (216)
T KOG0098|consen 68 FRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSN-ENMVIMLIGNKSDLEARREVSKEEGEAF-----AREH 141 (216)
T ss_pred HHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcC-CCcEEEEEcchhhhhccccccHHHHHHH-----HHHc
Confidence 578899999999999999999999999999999999877642 688999999999996543 33332221 1234
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
+..++++||++++|+++.|......+-.+
T Consensus 142 gLifmETSakt~~~VEEaF~nta~~Iy~~ 170 (216)
T KOG0098|consen 142 GLIFMETSAKTAENVEEAFINTAKEIYRK 170 (216)
T ss_pred CceeehhhhhhhhhHHHHHHHHHHHHHHH
Confidence 55677999999999999999888777543
No 50
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.77 E-value=8.3e-18 Score=100.03 Aligned_cols=99 Identities=9% Similarity=0.061 Sum_probs=73.6
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHH-HHHHHHHhcCCCCCCCeEEEEeeCCCCCCC--------------CCHHH
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEA-RDELHRMLNEDELRDAVLLVFANKQDLPNA--------------MNAAE 65 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~--------------~~~~~ 65 (110)
|+.+++.|++++|++|+|+|.+++.++... ..|+..+.... ++.|+++|+||+|+.+. ...++
T Consensus 66 ~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~ 143 (182)
T cd04172 66 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQ 143 (182)
T ss_pred hHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHH
Confidence 456888999999999999999999999887 56776664432 46899999999998542 12222
Q ss_pred HHhhhCCCcccCcc-eEEEeeecccCCC-HHHHHHHHHHHHHh
Q 044598 66 ITDKLGLHSLRQRH-WYIQSTCATSGEG-LYEGLDWLSNNIAN 106 (110)
Q Consensus 66 ~~~~~~~~~~~~~~-~~~~~~Sa~~~~~-i~~l~~~l~~~~~~ 106 (110)
..+. ....+ .++++|||++|+| ++++|..+.+...+
T Consensus 144 ~~~~-----a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~~~~ 181 (182)
T cd04172 144 GANM-----AKQIGAATYIECSALQSENSVRDIFHVATLACVN 181 (182)
T ss_pred HHHH-----HHHcCCCEEEECCcCCCCCCHHHHHHHHHHHHhc
Confidence 2111 11234 3789999999998 99999999886543
No 51
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.77 E-value=1.1e-17 Score=97.11 Aligned_cols=99 Identities=17% Similarity=0.229 Sum_probs=74.6
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC-CHHHHHhhhCCCcccCcc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRH 79 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 79 (110)
|+++|..|+++++++++|+|.++..++.....|+..+.......+.|+++|+||+|+.+.. ...+..... ....
T Consensus 62 ~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~-----~~~~ 136 (162)
T cd04138 62 YSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLA-----KSYG 136 (162)
T ss_pred hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHH-----HHhC
Confidence 4578999999999999999999988888777777766544333578999999999986532 222222221 1223
Q ss_pred eEEEeeecccCCCHHHHHHHHHHHH
Q 044598 80 WYIQSTCATSGEGLYEGLDWLSNNI 104 (110)
Q Consensus 80 ~~~~~~Sa~~~~~i~~l~~~l~~~~ 104 (110)
.+++++||++|.|++++++++.+.+
T Consensus 137 ~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 137 IPYIETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred CeEEEecCCCCCCHHHHHHHHHHHh
Confidence 4788999999999999999998754
No 52
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.76 E-value=2e-17 Score=98.89 Aligned_cols=102 Identities=13% Similarity=0.148 Sum_probs=75.7
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCC--CCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCccc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLR 76 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~ 76 (110)
|+.++..|++++|++|+|+|.+++.++.....|+..+..... ..+.|+++|+||+|+.... ...+.... ..
T Consensus 60 ~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~-----~~ 134 (190)
T cd04144 60 YTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAAL-----AR 134 (190)
T ss_pred hHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHH-----HH
Confidence 456788999999999999999998888887777766543221 2468999999999985432 22222111 11
Q ss_pred CcceEEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 77 QRHWYIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 77 ~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
..+.+++++||++|.|++++++++.+.+..+
T Consensus 135 ~~~~~~~e~SAk~~~~v~~l~~~l~~~l~~~ 165 (190)
T cd04144 135 RLGCEFIEASAKTNVNVERAFYTLVRALRQQ 165 (190)
T ss_pred HhCCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 2235789999999999999999999887644
No 53
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.76 E-value=2.8e-17 Score=96.16 Aligned_cols=99 Identities=14% Similarity=0.222 Sum_probs=75.1
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCcc
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRH 79 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~ 79 (110)
+.+|..+++++|++++|+|++++++++....|+..+.... ..+.|+++|+||+|+.+.. ..++..... ...+
T Consensus 64 ~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~ 137 (165)
T cd01865 64 RTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQVILVGNKCDMEDERVVSSERGRQLA-----DQLG 137 (165)
T ss_pred HHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCCEEEEEECcccCcccccCHHHHHHHH-----HHcC
Confidence 5678899999999999999999988988888887764432 2468999999999996543 222222211 1123
Q ss_pred eEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 80 WYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 80 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
++++++||++|.|++++++++.+.+..
T Consensus 138 ~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 164 (165)
T cd01865 138 FEFFEASAKENINVKQVFERLVDIICD 164 (165)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 478999999999999999999987754
No 54
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.75 E-value=3.2e-17 Score=100.62 Aligned_cols=100 Identities=13% Similarity=0.087 Sum_probs=73.6
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHH-HHHHHHHhcCCCCCCCeEEEEeeCCCCCCC--------------CCHHH
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEA-RDELHRMLNEDELRDAVLLVFANKQDLPNA--------------MNAAE 65 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~--------------~~~~~ 65 (110)
|+.+++.|+++||++++|+|.+++.++... ..|+..+.... ++.|+++|+||+|+... ...++
T Consensus 74 ~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e 151 (232)
T cd04174 74 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQ 151 (232)
T ss_pred hHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhhhhccccCCcCCHHH
Confidence 456788999999999999999999999874 56776665332 46899999999998532 12222
Q ss_pred HHhhhCCCcccCcce-EEEeeecccCC-CHHHHHHHHHHHHHhh
Q 044598 66 ITDKLGLHSLRQRHW-YIQSTCATSGE-GLYEGLDWLSNNIANK 107 (110)
Q Consensus 66 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~-~i~~l~~~l~~~~~~~ 107 (110)
..+. ....+. .+++|||++|+ |++++|..++..+.+.
T Consensus 152 ~~~~-----a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 152 GCAL-----AKQLGAEVYLECSAFTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred HHHH-----HHHcCCCEEEEccCCcCCcCHHHHHHHHHHHHHHh
Confidence 2111 112344 58899999998 8999999998877553
No 55
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.75 E-value=1e-17 Score=99.65 Aligned_cols=102 Identities=8% Similarity=0.074 Sum_probs=73.4
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCC---HHHHHh-hhCCCccc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITD-KLGLHSLR 76 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~---~~~~~~-~~~~~~~~ 76 (110)
|+.+|..++++||++++|+|.+++.++.....|+..+..... ...| ++|+||+|+..... .+.+.. .... ..
T Consensus 62 ~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~-~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~--a~ 137 (182)
T cd04128 62 FINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNK-TAIP-ILVGTKYDLFADLPPEEQEEITKQARKY--AK 137 (182)
T ss_pred HHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCE-EEEEEchhccccccchhhhhhHHHHHHH--HH
Confidence 456889999999999999999999999988888887755322 3466 68899999853211 111111 0000 11
Q ss_pred CcceEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 77 QRHWYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 77 ~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
..+.+++++||++|.|++++|+++.+.+..
T Consensus 138 ~~~~~~~e~SAk~g~~v~~lf~~l~~~l~~ 167 (182)
T cd04128 138 AMKAPLIFCSTSHSINVQKIFKIVLAKAFD 167 (182)
T ss_pred HcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 233578999999999999999999988754
No 56
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.75 E-value=3.9e-17 Score=96.17 Aligned_cols=102 Identities=22% Similarity=0.251 Sum_probs=74.7
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCH---HHHHhhhCCCcccC
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA---AEITDKLGLHSLRQ 77 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~---~~~~~~~~~~~~~~ 77 (110)
|..++..+++++|++++|+|+++++++.....|+..+.+.......|+++|+||+|+.+.... ++....+. ..
T Consensus 62 ~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~----~~ 137 (170)
T cd04108 62 FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLA----AE 137 (170)
T ss_pred HHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHH----HH
Confidence 356788999999999999999998888888888887755432235789999999998543221 11111111 11
Q ss_pred cceEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 78 RHWYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 78 ~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
.+.+++++||++|.|++++|+.+.+....
T Consensus 138 ~~~~~~e~Sa~~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 138 MQAEYWSVSALSGENVREFFFRVAALTFE 166 (170)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 23467899999999999999999887743
No 57
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.75 E-value=4.9e-17 Score=95.31 Aligned_cols=99 Identities=18% Similarity=0.230 Sum_probs=75.5
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCcc
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRH 79 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~ 79 (110)
..++..++++||++++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+.. ..++..... ....
T Consensus 66 ~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~ 139 (167)
T cd01867 66 RTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHA-SEDVERMLVGNKCDMEEKRVVSKEEGEALA-----DEYG 139 (167)
T ss_pred HHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHH-----HHcC
Confidence 4577889999999999999999989888887777665432 2568999999999996432 222222221 1223
Q ss_pred eEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 80 WYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 80 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
.+++++||++|.|++++|+++.+.+..
T Consensus 140 ~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 166 (167)
T cd01867 140 IKFLETSAKANINVEEAFFTLAKDIKK 166 (167)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 478999999999999999999998764
No 58
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.75 E-value=3.5e-17 Score=95.38 Aligned_cols=99 Identities=17% Similarity=0.229 Sum_probs=74.7
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~ 78 (110)
|+.+++.+++++|++++|+|++++.++.....|+..+.......+.|+++++||+|+.+.. ..++..... ...
T Consensus 63 ~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~-----~~~ 137 (164)
T cd04145 63 FSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELA-----RKL 137 (164)
T ss_pred hhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHH-----HHc
Confidence 3567889999999999999999988888887777776543333578999999999986543 222222221 122
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHH
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNI 104 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~ 104 (110)
+.+++++||++|.|++++|+++.+.+
T Consensus 138 ~~~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 138 KIPYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred CCcEEEeeCCCCCCHHHHHHHHHHhh
Confidence 34788999999999999999998765
No 59
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.75 E-value=4.5e-17 Score=95.07 Aligned_cols=99 Identities=26% Similarity=0.351 Sum_probs=74.0
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCC----CCCCeEEEEeeCCCCCCC--CCHHHHHhhhCCCcc
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDE----LRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSL 75 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~ 75 (110)
+.++..+++++|++|+|+|++++.++.....|+..+..... ..+.|+++|+||+|+.+. ...++.....
T Consensus 63 ~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----- 137 (168)
T cd04119 63 LEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWA----- 137 (168)
T ss_pred HHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHH-----
Confidence 35778899999999999999998888887777776654322 246899999999998632 2233322221
Q ss_pred cCcceEEEeeecccCCCHHHHHHHHHHHHH
Q 044598 76 RQRHWYIQSTCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 76 ~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
...+.+++++||++|.|++++++++.+.+.
T Consensus 138 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~ 167 (168)
T cd04119 138 ESKGFKYFETSACTGEGVNEMFQTLFSSIV 167 (168)
T ss_pred HHcCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 122357899999999999999999998764
No 60
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.75 E-value=5.8e-17 Score=94.55 Aligned_cols=101 Identities=20% Similarity=0.253 Sum_probs=75.2
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~ 78 (110)
|+.+++.++++++++++|+|++++.++.....|...+.......+.|+++|+||+|+.... ..+...... ...
T Consensus 61 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~-----~~~ 135 (164)
T smart00173 61 FSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELA-----RQW 135 (164)
T ss_pred chHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHH-----HHc
Confidence 3567889999999999999999988888877776665544333478999999999986532 222222111 112
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
..+++++||++|.|++++++++.+.+..
T Consensus 136 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 163 (164)
T smart00173 136 GCPFLETSAKERVNVDEAFYDLVREIRK 163 (164)
T ss_pred CCEEEEeecCCCCCHHHHHHHHHHHHhh
Confidence 3578999999999999999999987653
No 61
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.75 E-value=5.4e-17 Score=94.93 Aligned_cols=99 Identities=17% Similarity=0.249 Sum_probs=75.3
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCcc
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRH 79 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~ 79 (110)
..++..+++++|++++|+|+++++++.....|+..+.... ..+.|+++++||+|+.+.. ..++..... ...+
T Consensus 65 ~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~ 138 (166)
T cd01869 65 RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTDKRVVDYSEAQEFA-----DELG 138 (166)
T ss_pred HHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEEChhcccccCCCHHHHHHHH-----HHcC
Confidence 4577889999999999999999988888888777664332 2468999999999985443 223322221 1234
Q ss_pred eEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 80 WYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 80 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
.+++++||++|.|+++++.++.+.+.+
T Consensus 139 ~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 165 (166)
T cd01869 139 IPFLETSAKNATNVEQAFMTMAREIKK 165 (166)
T ss_pred CeEEEEECCCCcCHHHHHHHHHHHHHh
Confidence 578999999999999999999988754
No 62
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.75 E-value=5.1e-17 Score=98.66 Aligned_cols=101 Identities=21% Similarity=0.350 Sum_probs=76.9
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCcc
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRH 79 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~ 79 (110)
..++..|++++|++++|+|++++.++..+..|+..+.........|+++|+||+|+.+.. ..++..... ...+
T Consensus 66 ~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~-----~~~~ 140 (211)
T cd04111 66 RSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLA-----KDLG 140 (211)
T ss_pred HHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHH-----HHhC
Confidence 457888999999999999999999999888888877654333457899999999986532 222222211 1233
Q ss_pred eEEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 80 WYIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 80 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
.+++++||++|.|++++|++|.+.+.++
T Consensus 141 ~~~~e~Sak~g~~v~e~f~~l~~~~~~~ 168 (211)
T cd04111 141 MKYIETSARTGDNVEEAFELLTQEIYER 168 (211)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 6789999999999999999999887654
No 63
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.75 E-value=3.3e-17 Score=96.80 Aligned_cols=101 Identities=11% Similarity=0.085 Sum_probs=69.7
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHH-HHHHHHhcCCCCCCCeEEEEeeCCCCCCCCC-HHHHHhhhC--C----
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLG--L---- 72 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~-~~~~~~~~~--~---- 72 (110)
|+.+|+.+++++|++|+|+|.++++++.... .|+..+... ..+.|+++|+||+|+.+... .+.+..... .
T Consensus 62 ~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~ 139 (174)
T cd01871 62 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQ 139 (174)
T ss_pred hhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHH
Confidence 3567889999999999999999999998875 455544332 24799999999999954321 111111000 0
Q ss_pred --CcccCcc-eEEEeeecccCCCHHHHHHHHHHH
Q 044598 73 --HSLRQRH-WYIQSTCATSGEGLYEGLDWLSNN 103 (110)
Q Consensus 73 --~~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~ 103 (110)
......+ .++++|||++|+|++++|+.+.+.
T Consensus 140 ~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 140 GLAMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred HHHHHHHcCCcEEEEecccccCCHHHHHHHHHHh
Confidence 0001112 478999999999999999999864
No 64
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.74 E-value=6.4e-17 Score=98.45 Aligned_cols=100 Identities=11% Similarity=0.122 Sum_probs=73.8
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCC--CCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccC
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQ 77 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~ 77 (110)
+.++..|+++||++|+|+|++++++++....|+..+..... ..+.|+++|+||+|+.+.. ..++..... ..
T Consensus 64 ~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~-----~~ 138 (215)
T cd04109 64 GKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFA-----QA 138 (215)
T ss_pred HHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHH-----HH
Confidence 45788999999999999999999999888777766644321 1356899999999996432 222222111 11
Q ss_pred cceEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 78 RHWYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 78 ~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
.+.+++++||++|+|++++|+++.+.+..
T Consensus 139 ~~~~~~~iSAktg~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 139 NGMESCLVSAKTGDRVNLLFQQLAAELLG 167 (215)
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 23578899999999999999999988753
No 65
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=2.3e-17 Score=93.11 Aligned_cols=99 Identities=17% Similarity=0.316 Sum_probs=77.7
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHH---HHhhhCCCcc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAE---ITDKLGLHSL 75 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~---~~~~~~~~~~ 75 (110)
+|.+.-.||++|+++|+++|.+++++++....|...+-.. ...+.|+++|+||||+.+.. +.+. +.+.+
T Consensus 83 yrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIkty-sw~naqvilvgnKCDmd~eRvis~e~g~~l~~~L----- 156 (193)
T KOG0093|consen 83 YRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTY-SWDNAQVILVGNKCDMDSERVISHERGRQLADQL----- 156 (193)
T ss_pred hhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheee-eccCceEEEEecccCCccceeeeHHHHHHHHHHh-----
Confidence 4567788999999999999999999999988887765333 33689999999999996543 2222 23333
Q ss_pred cCcceEEEeeecccCCCHHHHHHHHHHHHHhhc
Q 044598 76 RQRHWYIQSTCATSGEGLYEGLDWLSNNIANKV 108 (110)
Q Consensus 76 ~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 108 (110)
+..++++||+.+.|+.++|+.+...+..++
T Consensus 157 ---GfefFEtSaK~NinVk~~Fe~lv~~Ic~km 186 (193)
T KOG0093|consen 157 ---GFEFFETSAKENINVKQVFERLVDIICDKM 186 (193)
T ss_pred ---ChHHhhhcccccccHHHHHHHHHHHHHHHh
Confidence 346789999999999999999999887654
No 66
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.74 E-value=3.4e-18 Score=95.86 Aligned_cols=105 Identities=46% Similarity=0.776 Sum_probs=91.2
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcce
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 80 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 80 (110)
+|++|..||++.|++|||+|+++...+++....+.+++....+...|++|..||.|+..+...+++...+.+.....+.+
T Consensus 75 IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRsw 154 (185)
T KOG0074|consen 75 IRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSW 154 (185)
T ss_pred cchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceE
Confidence 48999999999999999999999888888878888887777778899999999999988777778777776666667889
Q ss_pred EEEeeecccCCCHHHHHHHHHHHHH
Q 044598 81 YIQSTCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 81 ~~~~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
.+.+|||.+++|+.+...|+.....
T Consensus 155 hIq~csals~eg~~dg~~wv~sn~~ 179 (185)
T KOG0074|consen 155 HIQECSALSLEGSTDGSDWVQSNPE 179 (185)
T ss_pred EeeeCccccccCccCcchhhhcCCC
Confidence 9999999999999999999877653
No 67
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.74 E-value=8.3e-17 Score=93.94 Aligned_cols=96 Identities=13% Similarity=0.155 Sum_probs=72.7
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCcc
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRH 79 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~ 79 (110)
+.++..+++++|++++|+|.+++++++....|+..+.... ..+.|+++|+||.|+.+.. ..++..... ....
T Consensus 63 ~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~-----~~~~ 136 (161)
T cd04117 63 QTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYA-PEGVQKILIGNKADEEQKRQVGDEQGNKLA-----KEYG 136 (161)
T ss_pred HhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCCCHHHHHHHH-----HHcC
Confidence 4578889999999999999999999998888887665432 2468999999999986543 222222211 1122
Q ss_pred eEEEeeecccCCCHHHHHHHHHHH
Q 044598 80 WYIQSTCATSGEGLYEGLDWLSNN 103 (110)
Q Consensus 80 ~~~~~~Sa~~~~~i~~l~~~l~~~ 103 (110)
.+++++||++|.|++++|.+|.+.
T Consensus 137 ~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 137 MDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHhh
Confidence 478999999999999999999864
No 68
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.73 E-value=6.6e-17 Score=94.32 Aligned_cols=99 Identities=12% Similarity=0.141 Sum_probs=74.5
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcce
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 80 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 80 (110)
|+++|+.|++++|++++|+|++++.++.....|+..+... ..+.|+++|+||+|+.... .++... + .....+
T Consensus 62 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~Dl~~~~-~~~~~~-~----~~~~~~ 133 (161)
T cd04124 62 FQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREY--RPEIPCIVVANKIDLDPSV-TQKKFN-F----AEKHNL 133 (161)
T ss_pred hhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEECccCchhH-HHHHHH-H----HHHcCC
Confidence 4578899999999999999999988888777777766432 2468999999999984321 111111 1 111245
Q ss_pred EEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 81 YIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 81 ~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
+++++||++|.|++++++.+.+.+.++
T Consensus 134 ~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 160 (161)
T cd04124 134 PLYYVSAADGTNVVKLFQDAIKLAVSY 160 (161)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 788999999999999999999887654
No 69
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.73 E-value=5e-17 Score=96.39 Aligned_cols=98 Identities=8% Similarity=0.035 Sum_probs=71.6
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHH-HHHHHHHhcCCCCCCCeEEEEeeCCCCCCC--------------CCHHH
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEA-RDELHRMLNEDELRDAVLLVFANKQDLPNA--------------MNAAE 65 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~--------------~~~~~ 65 (110)
|+.+++.|+++||++|+|+|.+++.++... ..|+..+.... ++.|+++|+||+|+.+. ...++
T Consensus 62 ~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~--~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e 139 (178)
T cd04131 62 YDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFC--PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQ 139 (178)
T ss_pred hhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHC--CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHH
Confidence 355778899999999999999999999885 56776665432 47899999999998542 11222
Q ss_pred HHhhhCCCcccCcce-EEEeeecccCCC-HHHHHHHHHHHHH
Q 044598 66 ITDKLGLHSLRQRHW-YIQSTCATSGEG-LYEGLDWLSNNIA 105 (110)
Q Consensus 66 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~~-i~~l~~~l~~~~~ 105 (110)
..+. ....+. ++++|||++|+| ++++|..+.+...
T Consensus 140 ~~~~-----a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 140 GCAI-----AKQLGAEIYLECSAFTSEKSVRDIFHVATMACL 176 (178)
T ss_pred HHHH-----HHHhCCCEEEECccCcCCcCHHHHHHHHHHHHh
Confidence 1111 112333 689999999995 9999999988543
No 70
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.73 E-value=8.2e-17 Score=96.23 Aligned_cols=104 Identities=17% Similarity=0.173 Sum_probs=73.7
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHH-HHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhh---------
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKL--------- 70 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~--------- 70 (110)
|+.+++.++++++++++|+|.+++.++.... .|+..+... ..+.|+++|+||+|+.......+.....
T Consensus 61 ~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~--~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~ 138 (189)
T cd04134 61 FDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREH--CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEE 138 (189)
T ss_pred ccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHH
Confidence 4567888999999999999999999988775 466665433 2478999999999996543211110000
Q ss_pred CCCcc-cCcceEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 71 GLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 71 ~~~~~-~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
+.... ....++++++||++|.|++++|.++.+.+.+
T Consensus 139 ~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 139 GLAVAKRINALRYLECSAKLNRGVNEAFTEAARVALN 175 (189)
T ss_pred HHHHHHHcCCCEEEEccCCcCCCHHHHHHHHHHHHhc
Confidence 00000 1123578999999999999999999988764
No 71
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.73 E-value=1.5e-16 Score=95.27 Aligned_cols=100 Identities=14% Similarity=0.258 Sum_probs=75.0
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCcc
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRH 79 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~ 79 (110)
..++..+++++|++++|+|+++++++.....|+..+.... ..+.|+++|+||+|+.... ..++..... ...+
T Consensus 64 ~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~-----~~~~ 137 (191)
T cd04112 64 RSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYA-QEDVVIMLLGNKADMSGERVVKREDGERLA-----KEYG 137 (191)
T ss_pred HHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccchhccccCHHHHHHHH-----HHcC
Confidence 4567889999999999999999888888877777665432 2468999999999985322 222222211 1123
Q ss_pred eEEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 80 WYIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 80 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
.+++++||++|.|+++++.++.+.+...
T Consensus 138 ~~~~e~Sa~~~~~v~~l~~~l~~~~~~~ 165 (191)
T cd04112 138 VPFMETSAKTGLNVELAFTAVAKELKHR 165 (191)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 4789999999999999999999888654
No 72
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=7.8e-17 Score=91.60 Aligned_cols=102 Identities=23% Similarity=0.311 Sum_probs=81.7
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCH--HHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA--AEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~ 78 (110)
||+..++||++|.++++|+|.++.++++.+..|+.+...... +++-+++++||.|+.+.... .+.... ...+
T Consensus 71 FRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs-~nIvviL~GnKkDL~~~R~VtflEAs~F-----aqEn 144 (214)
T KOG0086|consen 71 FRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLAS-PNIVVILCGNKKDLDPEREVTFLEASRF-----AQEN 144 (214)
T ss_pred HHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCC-CcEEEEEeCChhhcChhhhhhHHHHHhh-----hccc
Confidence 678899999999999999999999999999999988754432 57889999999999765432 222221 1234
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHHhhc
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIANKV 108 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 108 (110)
.+.++++||++|+|+++.|-...+.+..++
T Consensus 145 el~flETSa~TGeNVEEaFl~c~~tIl~kI 174 (214)
T KOG0086|consen 145 ELMFLETSALTGENVEEAFLKCARTILNKI 174 (214)
T ss_pred ceeeeeecccccccHHHHHHHHHHHHHHHH
Confidence 567889999999999999999888887765
No 73
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.73 E-value=1.8e-16 Score=94.53 Aligned_cols=101 Identities=18% Similarity=0.235 Sum_probs=76.2
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCcc
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRH 79 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~ 79 (110)
+.+|..+++++|++++|+|.+++.++.....|+..+..... ...|+++++||+|+.+.. ..+...... ...+
T Consensus 63 ~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~-~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~-----~~~~ 136 (188)
T cd04125 63 RSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYAR-ENVIKVIVANKSDLVNNKVVDSNIAKSFC-----DSLN 136 (188)
T ss_pred HhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECCCCcccccCCHHHHHHHH-----HHcC
Confidence 45788899999999999999999888888887776654321 358999999999986432 222222111 1224
Q ss_pred eEEEeeecccCCCHHHHHHHHHHHHHhhc
Q 044598 80 WYIQSTCATSGEGLYEGLDWLSNNIANKV 108 (110)
Q Consensus 80 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 108 (110)
++++++||++|.|++++|.++.+.+.++.
T Consensus 137 ~~~~evSa~~~~~i~~~f~~l~~~~~~~~ 165 (188)
T cd04125 137 IPFFETSAKQSINVEEAFILLVKLIIKRL 165 (188)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 47899999999999999999999887654
No 74
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.72 E-value=8.7e-17 Score=95.09 Aligned_cols=98 Identities=12% Similarity=0.094 Sum_probs=69.8
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHH-HHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCC------
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD-ELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH------ 73 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~------ 73 (110)
|+.+|..+++++|++|+|+|.+++.++..... |+..+... ..+.|+++|+||+|+.+... ..+.+...
T Consensus 62 ~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~--~~~~piilvgnK~Dl~~~~~---~~~~l~~~~~~~v~ 136 (175)
T cd01874 62 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH--CPKTPFLLVGTQIDLRDDPS---TIEKLAKNKQKPIT 136 (175)
T ss_pred hhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhhChh---hHHHhhhccCCCcC
Confidence 35678889999999999999999989988764 65554332 24689999999999854311 00001000
Q ss_pred ------cccCc-ceEEEeeecccCCCHHHHHHHHHHH
Q 044598 74 ------SLRQR-HWYIQSTCATSGEGLYEGLDWLSNN 103 (110)
Q Consensus 74 ------~~~~~-~~~~~~~Sa~~~~~i~~l~~~l~~~ 103 (110)
..... .+.++++||++|.|++++|+.++..
T Consensus 137 ~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 137 PETGEKLARDLKAVKYVECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred HHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHHHH
Confidence 00112 3579999999999999999998875
No 75
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.72 E-value=1.8e-16 Score=92.55 Aligned_cols=97 Identities=19% Similarity=0.290 Sum_probs=73.8
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCcc
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRH 79 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~ 79 (110)
+.+++.++++++++++|+|++++.++.....|+..+..... .+.|+++|+||+|+.... ..++...... ..+
T Consensus 66 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~-----~~~ 139 (165)
T cd01868 66 RAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHAD-SNIVIMLVGNKSDLRHLRAVPTEEAKAFAE-----KNG 139 (165)
T ss_pred HHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccccCCHHHHHHHHH-----HcC
Confidence 45778899999999999999998888888888877654422 368999999999986432 2223222211 234
Q ss_pred eEEEeeecccCCCHHHHHHHHHHHH
Q 044598 80 WYIQSTCATSGEGLYEGLDWLSNNI 104 (110)
Q Consensus 80 ~~~~~~Sa~~~~~i~~l~~~l~~~~ 104 (110)
.+++++||++|+|++++++++.+.+
T Consensus 140 ~~~~~~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 140 LSFIETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999998764
No 76
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.72 E-value=1e-16 Score=93.40 Aligned_cols=94 Identities=12% Similarity=0.216 Sum_probs=70.0
Q ss_pred HHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC----CCHHHHHhhhCCCcccCcceE
Q 044598 6 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----MNAAEITDKLGLHSLRQRHWY 81 (110)
Q Consensus 6 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~ 81 (110)
..|++.+|++++|+|.+++.++.....|+..+.......+.|+++|+||.|+... ...++..+... ....+.
T Consensus 60 ~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~----~~~~~~ 135 (158)
T cd04103 60 AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCA----DMKRCS 135 (158)
T ss_pred hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHH----HhCCCc
Confidence 3577899999999999999999998888887765544457899999999998421 12222211110 112468
Q ss_pred EEeeecccCCCHHHHHHHHHHH
Q 044598 82 IQSTCATSGEGLYEGLDWLSNN 103 (110)
Q Consensus 82 ~~~~Sa~~~~~i~~l~~~l~~~ 103 (110)
+++|||++|.|++++|..+.+.
T Consensus 136 ~~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 136 YYETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred EEEEecCCCCCHHHHHHHHHhh
Confidence 9999999999999999998864
No 77
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.72 E-value=8.4e-17 Score=96.66 Aligned_cols=93 Identities=9% Similarity=0.018 Sum_probs=67.9
Q ss_pred hHHHhcccCCEEEEEEECCChhhHHHHH-HHHHHHhcCCCCCCCeEEEEeeCCCCCCC---------------------C
Q 044598 4 LWRHYFQNTQGLIFVVDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNA---------------------M 61 (110)
Q Consensus 4 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~---------------------~ 61 (110)
+.+.|+++||++|+|+|.+++.++.... .|+..+... ..+.|+++|+||+|+... .
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V 157 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHF--CPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL 157 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhccccccchhhhcccccccccccCCcc
Confidence 3456899999999999999999998886 466655332 146899999999998531 1
Q ss_pred CHHHHHhhhCCCcccCcceEEEeeecccCCCHHHHHHHHHHH
Q 044598 62 NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 103 (110)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 103 (110)
..++.... ....+.++++|||++|+|++++|+.+++.
T Consensus 158 ~~~e~~~~-----a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 158 PPETGRAV-----AKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CHHHHHHH-----HHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 12222111 12234589999999999999999998764
No 78
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.72 E-value=2.4e-16 Score=94.89 Aligned_cols=100 Identities=18% Similarity=0.256 Sum_probs=76.4
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~ 78 (110)
|+.++..++++++++++|+|++++.++.....|+..+.... ...|+++|+||+|+.+.. ..++..... ...
T Consensus 68 ~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~--~~~piivVgNK~Dl~~~~~~~~~~~~~~~-----~~~ 140 (199)
T cd04110 68 FRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNC--DDVCKVLVGNKNDDPERKVVETEDAYKFA-----GQM 140 (199)
T ss_pred HHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccccCHHHHHHHH-----HHc
Confidence 35678999999999999999999999988888887764432 468999999999986542 222222211 122
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
+.+++++||++|.|++++|+++.+.+...
T Consensus 141 ~~~~~e~Sa~~~~gi~~lf~~l~~~~~~~ 169 (199)
T cd04110 141 GISLFETSAKENINVEEMFNCITELVLRA 169 (199)
T ss_pred CCEEEEEECCCCcCHHHHHHHHHHHHHHh
Confidence 35789999999999999999999988653
No 79
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.72 E-value=2.6e-16 Score=92.38 Aligned_cols=99 Identities=17% Similarity=0.225 Sum_probs=76.2
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCcc
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRH 79 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~ 79 (110)
..++..+++++|++++|+|++++.++.....|+..+.... .++.|+++|+||.|+.+.. ..++..... ...+
T Consensus 67 ~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~ 140 (168)
T cd01866 67 RSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDLESRREVSYEEGEAFA-----KEHG 140 (168)
T ss_pred HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHH-----HHcC
Confidence 4567889999999999999999989988888887765442 2579999999999986432 233332221 1234
Q ss_pred eEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 80 WYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 80 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
..++++||++++|++++|.++.+.+..
T Consensus 141 ~~~~e~Sa~~~~~i~~~~~~~~~~~~~ 167 (168)
T cd01866 141 LIFMETSAKTASNVEEAFINTAKEIYE 167 (168)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 578999999999999999999988754
No 80
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.71 E-value=3.6e-16 Score=96.94 Aligned_cols=99 Identities=16% Similarity=0.141 Sum_probs=75.3
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCC--------CCCCCeEEEEeeCCCCCC--CCCHHHHHhhhC
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNED--------ELRDAVLLVFANKQDLPN--AMNAAEITDKLG 71 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~iiv~nK~Dl~~--~~~~~~~~~~~~ 71 (110)
+.++..++.++|++|+|+|.+++.+++....|+..+.... ...+.|+++|+||+|+.. ....+++.+..+
T Consensus 62 ~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~ 141 (247)
T cd04143 62 PAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVG 141 (247)
T ss_pred hHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHH
Confidence 4577788999999999999999989988877777765421 224789999999999964 233444444432
Q ss_pred CCcccCcceEEEeeecccCCCHHHHHHHHHHHH
Q 044598 72 LHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 104 (110)
Q Consensus 72 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 104 (110)
. .....++++||++|.|++++|.+|.+..
T Consensus 142 ~----~~~~~~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 142 G----DENCAYFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred h----cCCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 1 1245789999999999999999998864
No 81
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=1.4e-16 Score=94.58 Aligned_cols=100 Identities=15% Similarity=0.278 Sum_probs=79.4
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC--CCHHHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~ 78 (110)
||.+...||++|.++++|+|.+...+++....|+.++..+.+ .++++++|+||+||... .+.++....- ...
T Consensus 76 yrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad-~nivimLvGNK~DL~~lraV~te~~k~~A-----e~~ 149 (222)
T KOG0087|consen 76 YRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHAD-SNIVIMLVGNKSDLNHLRAVPTEDGKAFA-----EKE 149 (222)
T ss_pred hccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCC-CCeEEEEeecchhhhhccccchhhhHhHH-----Hhc
Confidence 577888999999999999999998899999999999877654 68999999999999652 2333322211 123
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
...++++||..+.|+++.|..+...+-+
T Consensus 150 ~l~f~EtSAl~~tNVe~aF~~~l~~I~~ 177 (222)
T KOG0087|consen 150 GLFFLETSALDATNVEKAFERVLTEIYK 177 (222)
T ss_pred CceEEEecccccccHHHHHHHHHHHHHH
Confidence 4578899999999999999888877643
No 82
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.71 E-value=2e-16 Score=92.58 Aligned_cols=97 Identities=13% Similarity=0.146 Sum_probs=70.0
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcC--CCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCccc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNE--DELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLR 76 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~ 76 (110)
|+.++..++++++++++|+|.++++++.....|+..+... ....+.|+++|+||+|+.+.. ..++.... ..
T Consensus 62 ~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~-----~~ 136 (165)
T cd04140 62 FPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAAC-----AT 136 (165)
T ss_pred chHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHH-----HH
Confidence 3457788999999999999999988888777766544322 122578999999999996532 12221111 11
Q ss_pred CcceEEEeeecccCCCHHHHHHHHHH
Q 044598 77 QRHWYIQSTCATSGEGLYEGLDWLSN 102 (110)
Q Consensus 77 ~~~~~~~~~Sa~~~~~i~~l~~~l~~ 102 (110)
....+++++||++|.|++++|++|..
T Consensus 137 ~~~~~~~e~SA~~g~~v~~~f~~l~~ 162 (165)
T cd04140 137 EWNCAFMETSAKTNHNVQELFQELLN 162 (165)
T ss_pred HhCCcEEEeecCCCCCHHHHHHHHHh
Confidence 22357899999999999999999975
No 83
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.71 E-value=3.6e-16 Score=91.38 Aligned_cols=97 Identities=18% Similarity=0.234 Sum_probs=72.2
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCcc
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRH 79 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~ 79 (110)
+.++..+++++|++++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+.. ..++...... ....
T Consensus 66 ~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~----~~~~ 140 (165)
T cd01864 66 RTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYG-ASNVVLLLIGNKCDLEEQREVLFEEACTLAE----KNGM 140 (165)
T ss_pred HHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHH----HcCC
Confidence 4578889999999999999999988888877877765432 2578999999999986442 2222222111 1122
Q ss_pred eEEEeeecccCCCHHHHHHHHHHH
Q 044598 80 WYIQSTCATSGEGLYEGLDWLSNN 103 (110)
Q Consensus 80 ~~~~~~Sa~~~~~i~~l~~~l~~~ 103 (110)
..++++||++|.|++++++++.+.
T Consensus 141 ~~~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 141 LAVLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHh
Confidence 367899999999999999999875
No 84
>PLN03108 Rab family protein; Provisional
Probab=99.71 E-value=3.5e-16 Score=94.95 Aligned_cols=100 Identities=17% Similarity=0.240 Sum_probs=75.9
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCcc
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRH 79 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~ 79 (110)
+.++..+++++|++++|+|++++.++.....|+..+.... ..+.|+++++||+|+.... ..++..... ...+
T Consensus 69 ~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~ 142 (210)
T PLN03108 69 RSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFA-----KEHG 142 (210)
T ss_pred HHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccCCCHHHHHHHH-----HHcC
Confidence 4578889999999999999999988888777777654332 2478999999999986532 223322221 1234
Q ss_pred eEEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 80 WYIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 80 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
++++++||+++.|++++|.++.+.+..+
T Consensus 143 ~~~~e~Sa~~~~~v~e~f~~l~~~~~~~ 170 (210)
T PLN03108 143 LIFMEASAKTAQNVEEAFIKTAAKIYKK 170 (210)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 5789999999999999999999888654
No 85
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.71 E-value=4.1e-16 Score=91.51 Aligned_cols=99 Identities=11% Similarity=0.185 Sum_probs=73.3
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCC---CCCCeEEEEeeCCCCCCC-CCHHHHHhhhCCCccc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDE---LRDAVLLVFANKQDLPNA-MNAAEITDKLGLHSLR 76 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~iiv~nK~Dl~~~-~~~~~~~~~~~~~~~~ 76 (110)
|+.+|..+++++|++++|+|.+++.++.....|...+..... ..+.|+++|+||+|+.+. ...++..+....
T Consensus 67 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---- 142 (170)
T cd04116 67 FRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRE---- 142 (170)
T ss_pred HHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHH----
Confidence 356888999999999999999998888887777766654321 246899999999998542 233333332210
Q ss_pred CcceEEEeeecccCCCHHHHHHHHHHH
Q 044598 77 QRHWYIQSTCATSGEGLYEGLDWLSNN 103 (110)
Q Consensus 77 ~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 103 (110)
....+++++||++|.|+.++|.++.+.
T Consensus 143 ~~~~~~~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 143 NGDYPYFETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhh
Confidence 122478899999999999999999865
No 86
>PLN03110 Rab GTPase; Provisional
Probab=99.71 E-value=3.6e-16 Score=95.28 Aligned_cols=100 Identities=16% Similarity=0.225 Sum_probs=76.2
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~ 78 (110)
|+.++..++++++++++|+|++++.+++....|+..+.... ..+.|+++|+||+|+.... ..++.. .+. ...
T Consensus 74 ~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~-~l~----~~~ 147 (216)
T PLN03110 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHA-DSNIVIMMAGNKSDLNHLRSVAEEDGQ-ALA----EKE 147 (216)
T ss_pred HHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEEChhcccccCCCHHHHH-HHH----HHc
Confidence 35678899999999999999999888888888877765432 2479999999999985432 222222 221 123
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
.++++++||++|.|++++|+++.+.+.+
T Consensus 148 ~~~~~e~SA~~g~~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 148 GLSFLETSALEATNVEKAFQTILLEIYH 175 (216)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999988754
No 87
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.71 E-value=2.8e-16 Score=93.56 Aligned_cols=99 Identities=12% Similarity=0.086 Sum_probs=72.3
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHH-HHHHHhcCCCCCCCeEEEEeeCCCCCCCC------CHHHHHhhhCCCc
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARD-ELHRMLNEDELRDAVLLVFANKQDLPNAM------NAAEITDKLGLHS 74 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~------~~~~~~~~~~~~~ 74 (110)
..+++.+++++|++++|+|.+++.+++.... |+..+... ..+.|+++|+||+|+.... ..++..+..
T Consensus 63 ~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~---- 136 (187)
T cd04132 63 DRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVA---- 136 (187)
T ss_pred HHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHH----
Confidence 4577889999999999999999888887753 55544322 2478999999999985432 122222211
Q ss_pred ccCcce-EEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 75 LRQRHW-YIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 75 ~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
...+. +++++||++|.|++++|..+.+.+...
T Consensus 137 -~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~ 169 (187)
T cd04132 137 -KKQGAFAYLECSAKTMENVEEVFDTAIEEALKK 169 (187)
T ss_pred -HHcCCcEEEEccCCCCCCHHHHHHHHHHHHHhh
Confidence 11222 788999999999999999999888654
No 88
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.70 E-value=4.2e-16 Score=91.68 Aligned_cols=94 Identities=20% Similarity=0.137 Sum_probs=68.9
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCC-----HHHHHhhhCCCccc
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-----AAEITDKLGLHSLR 76 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~-----~~~~~~~~~~~~~~ 76 (110)
+.++..|+++||++++|+|++++.++.....|+..+.. ..+.|+++|+||+|+.+... .+++...++.
T Consensus 68 ~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~---- 140 (169)
T cd01892 68 ILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFM---LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGL---- 140 (169)
T ss_pred cccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhcc---CCCCeEEEEEEcccccccccccccCHHHHHHHcCC----
Confidence 45788899999999999999998888776666654422 14689999999999854321 1222222221
Q ss_pred CcceEEEeeecccCCCHHHHHHHHHHHHH
Q 044598 77 QRHWYIQSTCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 77 ~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
..++++||++|.|++++|+.+.+.+.
T Consensus 141 ---~~~~~~Sa~~~~~v~~lf~~l~~~~~ 166 (169)
T cd01892 141 ---PPPLHFSSKLGDSSNELFTKLATAAQ 166 (169)
T ss_pred ---CCCEEEEeccCccHHHHHHHHHHHhh
Confidence 12468999999999999999988764
No 89
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.70 E-value=4.2e-16 Score=90.92 Aligned_cols=96 Identities=16% Similarity=0.258 Sum_probs=72.1
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCcc
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRH 79 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~ 79 (110)
+.+++.+++++|++++|+|++++.++.....|+..+.... .+.|+++|+||+|+.+.. ...... .+. ...+
T Consensus 66 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~-~~~----~~~~ 138 (164)
T cd04101 66 SDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQ-AFA----QANQ 138 (164)
T ss_pred HHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHH-HHH----HHcC
Confidence 4578899999999999999999888887777777665432 468999999999986543 221111 111 1123
Q ss_pred eEEEeeecccCCCHHHHHHHHHHHH
Q 044598 80 WYIQSTCATSGEGLYEGLDWLSNNI 104 (110)
Q Consensus 80 ~~~~~~Sa~~~~~i~~l~~~l~~~~ 104 (110)
.+++++||++|.|++++++++.+..
T Consensus 139 ~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 139 LKFFKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred CeEEEEeCCCCCChHHHHHHHHHHh
Confidence 4788999999999999999998865
No 90
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.70 E-value=5.4e-16 Score=93.29 Aligned_cols=100 Identities=17% Similarity=0.154 Sum_probs=74.1
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC---CHHHHHhhhCCCcccCc
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGLHSLRQR 78 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~ 78 (110)
+.+++.+++++|++++|+|++++.++.....|+..+.......+.|+++|+||+|+.+.. ..+....... ...
T Consensus 61 ~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~----~~~ 136 (198)
T cd04147 61 PAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVE----LDW 136 (198)
T ss_pred hHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHH----hhc
Confidence 457788999999999999999988888887777766654333579999999999985421 1222211111 012
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHH
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
..+++++||++|.|++++++++.+.+.
T Consensus 137 ~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 137 NCGFVETSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred CCcEEEecCCCCCCHHHHHHHHHHHhh
Confidence 346889999999999999999998764
No 91
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.70 E-value=6.1e-16 Score=90.07 Aligned_cols=97 Identities=18% Similarity=0.288 Sum_probs=74.7
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCcc
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRH 79 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~ 79 (110)
+.++..+++++|++++|+|+++++++.....|+..+..... .+.|+++++||+|+.... +.++...... ...
T Consensus 64 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~ 137 (163)
T cd01860 64 RSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNAS-PNIIIALVGNKADLESKRQVSTEEAQEYAD-----ENG 137 (163)
T ss_pred HHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccCcCCHHHHHHHHH-----HcC
Confidence 45778899999999999999999888888888877765433 578999999999986322 2333322211 123
Q ss_pred eEEEeeecccCCCHHHHHHHHHHHH
Q 044598 80 WYIQSTCATSGEGLYEGLDWLSNNI 104 (110)
Q Consensus 80 ~~~~~~Sa~~~~~i~~l~~~l~~~~ 104 (110)
.+++++||++|.|+.+++.++.+.+
T Consensus 138 ~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 138 LLFFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999999875
No 92
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.70 E-value=4.7e-16 Score=90.51 Aligned_cols=96 Identities=20% Similarity=0.242 Sum_probs=73.2
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCcc
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRH 79 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~ 79 (110)
+.+++.+++++|++++|+|++++.++.....|+..+.... .++.|+++++||+|+.... ..++...... ..+
T Consensus 63 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~ 136 (161)
T cd04113 63 RSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALA-SPNIVVILVGNKSDLADQREVTFLEASRFAQ-----ENG 136 (161)
T ss_pred HHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEEchhcchhccCCHHHHHHHHH-----HcC
Confidence 4567889999999999999999988888877777654332 2578999999999986432 2333322221 223
Q ss_pred eEEEeeecccCCCHHHHHHHHHHH
Q 044598 80 WYIQSTCATSGEGLYEGLDWLSNN 103 (110)
Q Consensus 80 ~~~~~~Sa~~~~~i~~l~~~l~~~ 103 (110)
+.++++||+++.|++++++++.+.
T Consensus 137 ~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 137 LLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 689999999999999999999875
No 93
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.70 E-value=7.7e-16 Score=89.59 Aligned_cols=100 Identities=18% Similarity=0.253 Sum_probs=74.9
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC--CCHHHHHhhhCCCcccCcc
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRH 79 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~ 79 (110)
..++..+++.++++++|+|.+++.++.....++..+.......+.|+++|+||+|+.+. ...++..... ....
T Consensus 62 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~-----~~~~ 136 (164)
T cd04139 62 AAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLA-----RQWG 136 (164)
T ss_pred hHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHH-----HHhC
Confidence 45678899999999999999998888777777777665433357999999999998652 2222222211 1123
Q ss_pred eEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 80 WYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 80 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
.+++++||++|+|++++++++.+.+..
T Consensus 137 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 163 (164)
T cd04139 137 VPYVETSAKTRQNVEKAFYDLVREIRQ 163 (164)
T ss_pred CeEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 478999999999999999999987753
No 94
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.70 E-value=3.9e-16 Score=91.86 Aligned_cols=98 Identities=10% Similarity=0.060 Sum_probs=71.0
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHH-HHHHHHhcCCCCCCCeEEEEeeCCCCCCCCC--------------HHHH
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNAMN--------------AAEI 66 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~--------------~~~~ 66 (110)
+.+++.+++++|++|+|+|.++++++.... .|+..+... .++.|+++|+||+|+..... .++.
T Consensus 60 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 137 (174)
T smart00174 60 DRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHF--CPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQG 137 (174)
T ss_pred chhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHH
Confidence 457788999999999999999998888775 466555433 25799999999999864221 1111
Q ss_pred HhhhCCCcccCcc-eEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 67 TDKLGLHSLRQRH-WYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 67 ~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
... ....+ .+++++||++|.|++++|..+.+.+.+
T Consensus 138 ~~~-----~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~~~~ 173 (174)
T smart00174 138 EAL-----AKRIGAVKYLECSALTQEGVREVFEEAIRAALN 173 (174)
T ss_pred HHH-----HHHcCCcEEEEecCCCCCCHHHHHHHHHHHhcC
Confidence 111 01122 378899999999999999999987643
No 95
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.70 E-value=5.8e-16 Score=90.07 Aligned_cols=97 Identities=24% Similarity=0.314 Sum_probs=73.3
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC-CHHHHHhhhCCCcccCcce
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHW 80 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~ 80 (110)
..++..+++++|++++|+|++++.++.....|+..+.......+.|+++|+||+|+.... ..++..... .....
T Consensus 63 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~-----~~~~~ 137 (161)
T cd01863 63 RTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFA-----RKHNM 137 (161)
T ss_pred hhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHH-----HHcCC
Confidence 356788899999999999999988888877777666554444579999999999996332 233322221 12345
Q ss_pred EEEeeecccCCCHHHHHHHHHHH
Q 044598 81 YIQSTCATSGEGLYEGLDWLSNN 103 (110)
Q Consensus 81 ~~~~~Sa~~~~~i~~l~~~l~~~ 103 (110)
+++++||++|+|++++++++.+.
T Consensus 138 ~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 138 LFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred EEEEEecCCCCCHHHHHHHHHHh
Confidence 79999999999999999998765
No 96
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.69 E-value=6.6e-16 Score=94.35 Aligned_cols=105 Identities=10% Similarity=0.088 Sum_probs=70.9
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCC-HHHH--------HhhhC
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEI--------TDKLG 71 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~-~~~~--------~~~~~ 71 (110)
|+.+++.+|+++|++|+|+|.+++++++....+|....... .++.|+++|+||+|+.+... .... ....+
T Consensus 62 ~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~-~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g 140 (222)
T cd04173 62 YDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEF-CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQG 140 (222)
T ss_pred HHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHH
Confidence 45678899999999999999999999988854444333222 25799999999999964311 0000 00000
Q ss_pred CCcccCcc-eEEEeeecccCCC-HHHHHHHHHHHHHh
Q 044598 72 LHSLRQRH-WYIQSTCATSGEG-LYEGLDWLSNNIAN 106 (110)
Q Consensus 72 ~~~~~~~~-~~~~~~Sa~~~~~-i~~l~~~l~~~~~~ 106 (110)
.......+ ..+++|||+++++ ++++|.........
T Consensus 141 ~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~~~ 177 (222)
T cd04173 141 TVLAKQVGAVSYVECSSRSSERSVRDVFHVATVASLG 177 (222)
T ss_pred HHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHHHHHh
Confidence 00011223 3799999999985 99999988886654
No 97
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.69 E-value=8.1e-16 Score=92.62 Aligned_cols=98 Identities=12% Similarity=0.067 Sum_probs=71.7
Q ss_pred HHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCC--CCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCcceE
Q 044598 6 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNED--ELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWY 81 (110)
Q Consensus 6 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~ 81 (110)
..++++||++++|+|++++.+++....|+..+.... ...++|+++|+||+|+.+.. ..++...... .....+
T Consensus 75 ~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~----~~~~~~ 150 (198)
T cd04142 75 FRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVR----KSWKCG 150 (198)
T ss_pred HhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHH----HhcCCc
Confidence 345789999999999999989988877777665432 12579999999999995532 2222221111 123457
Q ss_pred EEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 82 IQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 82 ~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
++++||++|.|++++|+.+.+.+..+
T Consensus 151 ~~e~Sak~g~~v~~lf~~i~~~~~~~ 176 (198)
T cd04142 151 YLECSAKYNWHILLLFKELLISATTR 176 (198)
T ss_pred EEEecCCCCCCHHHHHHHHHHHhhcc
Confidence 89999999999999999999877543
No 98
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.69 E-value=6.1e-16 Score=89.99 Aligned_cols=95 Identities=16% Similarity=0.240 Sum_probs=71.8
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCcc
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRH 79 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~ 79 (110)
+.++..+++++|++++|+|+++++++.....|+..+... ..+.|+++|+||+|+.... ..++..... ...+
T Consensus 65 ~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~-----~~~~ 137 (162)
T cd04106 65 DAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAE--CGDIPMVLVQTKIDLLDQAVITNEEAEALA-----KRLQ 137 (162)
T ss_pred HHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhcccccCCCHHHHHHHH-----HHcC
Confidence 467889999999999999999998888877777665432 2479999999999986432 222322221 1123
Q ss_pred eEEEeeecccCCCHHHHHHHHHHH
Q 044598 80 WYIQSTCATSGEGLYEGLDWLSNN 103 (110)
Q Consensus 80 ~~~~~~Sa~~~~~i~~l~~~l~~~ 103 (110)
++++++||++|.|+++++.++...
T Consensus 138 ~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 138 LPLFRTSVKDDFNVTELFEYLAEK 161 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 478999999999999999998764
No 99
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.69 E-value=1.4e-15 Score=89.23 Aligned_cols=103 Identities=11% Similarity=0.129 Sum_probs=74.9
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCC---CCCCCeEEEEeeCCCCCC--CCCHHHHHhhhCCCccc
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNED---ELRDAVLLVFANKQDLPN--AMNAAEITDKLGLHSLR 76 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~~iiv~nK~Dl~~--~~~~~~~~~~~~~~~~~ 76 (110)
..+|..+++++|++|+|+|+.++.++.....|...++... ...+.|+++|+||+|+.. ....++.......
T Consensus 63 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~---- 138 (172)
T cd01862 63 QSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQS---- 138 (172)
T ss_pred HhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHH----
Confidence 4578899999999999999998887776666655544331 123789999999999963 2233333332211
Q ss_pred CcceEEEeeecccCCCHHHHHHHHHHHHHhhc
Q 044598 77 QRHWYIQSTCATSGEGLYEGLDWLSNNIANKV 108 (110)
Q Consensus 77 ~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 108 (110)
....+++++||++|.|++++++++.+.+.+..
T Consensus 139 ~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~ 170 (172)
T cd01862 139 NGNIPYFETSAKEAINVEQAFETIARKALEQE 170 (172)
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 12357899999999999999999998877653
No 100
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.69 E-value=6.6e-16 Score=90.80 Aligned_cols=98 Identities=13% Similarity=0.209 Sum_probs=73.9
Q ss_pred chHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCC--HHHHHhhhCCCcccCcce
Q 044598 3 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHW 80 (110)
Q Consensus 3 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~ 80 (110)
.+++.+++++|++++|+|++++.++.....|+..+.......+.|+++|+||+|+.+... .++.. .+. ....+
T Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~-~~~----~~~~~ 141 (170)
T cd04115 67 SMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQ-RFA----DAHSM 141 (170)
T ss_pred hhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHH-HHH----HHcCC
Confidence 467889999999999999999989988888877665443335799999999999865432 22221 111 12235
Q ss_pred EEEeeeccc---CCCHHHHHHHHHHHHH
Q 044598 81 YIQSTCATS---GEGLYEGLDWLSNNIA 105 (110)
Q Consensus 81 ~~~~~Sa~~---~~~i~~l~~~l~~~~~ 105 (110)
+++++||++ +.|++++|..+.+.+.
T Consensus 142 ~~~e~Sa~~~~~~~~i~~~f~~l~~~~~ 169 (170)
T cd04115 142 PLFETSAKDPSENDHVEAIFMTLAHKLK 169 (170)
T ss_pred cEEEEeccCCcCCCCHHHHHHHHHHHhh
Confidence 789999999 8999999999988763
No 101
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.69 E-value=1.2e-15 Score=88.57 Aligned_cols=97 Identities=21% Similarity=0.280 Sum_probs=72.6
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCcc
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRH 79 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~ 79 (110)
..+++.+++++|++++|+|+++++++.....|+..+..... .+.|+++++||+|+.... ..+++.... ...+
T Consensus 63 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~-----~~~~ 136 (162)
T cd04123 63 HALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEYA-----KSVG 136 (162)
T ss_pred HHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHH-----HHcC
Confidence 45788899999999999999998888777777666544322 368999999999986432 223332221 1234
Q ss_pred eEEEeeecccCCCHHHHHHHHHHHH
Q 044598 80 WYIQSTCATSGEGLYEGLDWLSNNI 104 (110)
Q Consensus 80 ~~~~~~Sa~~~~~i~~l~~~l~~~~ 104 (110)
.+++++||+++.|++++++++.+.+
T Consensus 137 ~~~~~~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 137 AKHFETSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 5688999999999999999998765
No 102
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.68 E-value=1.2e-15 Score=88.80 Aligned_cols=98 Identities=17% Similarity=0.297 Sum_probs=74.9
Q ss_pred chHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCcce
Q 044598 3 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHW 80 (110)
Q Consensus 3 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~ 80 (110)
.++..+++.+|++++|+|++++.++.....|+..+..... .+.|+++++||+|+.+.. ..+...... ...++
T Consensus 64 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~-~~~pivvv~nK~D~~~~~~~~~~~~~~~~-----~~~~~ 137 (164)
T smart00175 64 SITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYAD-PNVVIMLVGNKSDLEDQRQVSREEAEAFA-----EEHGL 137 (164)
T ss_pred HHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhcccccCCCHHHHHHHH-----HHcCC
Confidence 4678899999999999999998888887777776654432 479999999999986532 223332221 12235
Q ss_pred EEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 81 YIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 81 ~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
+++++||++|.|++++++++.+.+.+
T Consensus 138 ~~~e~Sa~~~~~i~~l~~~i~~~~~~ 163 (164)
T smart00175 138 PFFETSAKTNTNVEEAFEELAREILK 163 (164)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 78999999999999999999988764
No 103
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.68 E-value=1.1e-15 Score=89.64 Aligned_cols=101 Identities=15% Similarity=0.158 Sum_probs=74.5
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~ 78 (110)
|+.+++.++++++++++|+|.+++.+++....|...+.......+.|+++++||.|+.+.. ..++...... ...
T Consensus 62 ~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~----~~~ 137 (168)
T cd04177 62 FTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQ----QWG 137 (168)
T ss_pred chhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHH----HcC
Confidence 4678999999999999999999988888877776665543333579999999999986433 2222211110 111
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHH
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
..+++++||+++.|++++|+++.+++.
T Consensus 138 ~~~~~~~SA~~~~~i~~~f~~i~~~~~ 164 (168)
T cd04177 138 NVPFYETSARKRTNVDEVFIDLVRQII 164 (168)
T ss_pred CceEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 257899999999999999999998663
No 104
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=2.4e-16 Score=90.17 Aligned_cols=103 Identities=15% Similarity=0.291 Sum_probs=82.6
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~ 78 (110)
||++.-.++++|-++++++|.+++.++-....|+..+..+.-..++.+++++||+|+.+.. +.++.... ....
T Consensus 80 FRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~L-----a~ky 154 (219)
T KOG0081|consen 80 FRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAAL-----ADKY 154 (219)
T ss_pred HHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHH-----HHHh
Confidence 6888899999999999999999999999999999887666544567899999999997654 22222221 1234
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHHhhc
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIANKV 108 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 108 (110)
++|++++||-+|.|+++..+.+...+.+++
T Consensus 155 glPYfETSA~tg~Nv~kave~LldlvM~Ri 184 (219)
T KOG0081|consen 155 GLPYFETSACTGTNVEKAVELLLDLVMKRI 184 (219)
T ss_pred CCCeeeeccccCcCHHHHHHHHHHHHHHHH
Confidence 568999999999999999999998888765
No 105
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.68 E-value=3.5e-16 Score=88.49 Aligned_cols=100 Identities=17% Similarity=0.243 Sum_probs=80.8
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~ 78 (110)
||.+...||++.++++.|+|.++.++|.....|+.++.... ...|-++|+||+|.++.. ..++.... ....
T Consensus 70 Frtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~nc--dsv~~vLVGNK~d~~~RrvV~t~dAr~~-----A~~m 142 (198)
T KOG0079|consen 70 FRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNC--DSVPKVLVGNKNDDPERRVVDTEDARAF-----ALQM 142 (198)
T ss_pred HHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcC--ccccceecccCCCCccceeeehHHHHHH-----HHhc
Confidence 57788999999999999999999999999999999986553 478999999999987653 22332222 1245
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
++.+|++||+..+|++++|.-|.++....
T Consensus 143 gie~FETSaKe~~NvE~mF~cit~qvl~~ 171 (198)
T KOG0079|consen 143 GIELFETSAKENENVEAMFHCITKQVLQA 171 (198)
T ss_pred CchheehhhhhcccchHHHHHHHHHHHHH
Confidence 66889999999999999999998887654
No 106
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.68 E-value=3.8e-16 Score=93.44 Aligned_cols=99 Identities=14% Similarity=0.208 Sum_probs=73.6
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC------CHHHHHhhhCCCcc
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM------NAAEITDKLGLHSL 75 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~------~~~~~~~~~~~~~~ 75 (110)
+.++..+++++|++++|+|++++.++.....|+..+.... .+.|+++|+||+|+.+.. ..+++....
T Consensus 64 ~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~----- 136 (193)
T cd04118 64 EAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLE--EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFA----- 136 (193)
T ss_pred hhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcC--CCCCEEEEEEcccccccccccCccCHHHHHHHH-----
Confidence 4678889999999999999999888887777777664431 468999999999985321 111222111
Q ss_pred cCcceEEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 76 RQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 76 ~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
.....+++++||++|.|++++++++.+.+.+.
T Consensus 137 ~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~ 168 (193)
T cd04118 137 DEIKAQHFETSSKTGQNVDELFQKVAEDFVSR 168 (193)
T ss_pred HHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 12235788999999999999999999887543
No 107
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.68 E-value=8.2e-16 Score=88.30 Aligned_cols=102 Identities=23% Similarity=0.360 Sum_probs=80.0
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCC-CCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccC
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR-DAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQ 77 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~ 77 (110)
||++.++||+++-++++|+|.++..+++....|+.+.......+ .+-+++|+.|+|+.... ..++ .+++ ...
T Consensus 71 frsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EE-aEkl----Aa~ 145 (213)
T KOG0091|consen 71 FRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEE-AEKL----AAS 145 (213)
T ss_pred HHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHH-HHHH----HHh
Confidence 68899999999999999999999999999999998765443323 35588999999997554 2333 2222 234
Q ss_pred cceEEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 78 RHWYIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 78 ~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
.+..++++||++|.|+++.|..+.+.+-.+
T Consensus 146 hgM~FVETSak~g~NVeEAF~mlaqeIf~~ 175 (213)
T KOG0091|consen 146 HGMAFVETSAKNGCNVEEAFDMLAQEIFQA 175 (213)
T ss_pred cCceEEEecccCCCcHHHHHHHHHHHHHHH
Confidence 566899999999999999999988877544
No 108
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.67 E-value=9.3e-16 Score=89.45 Aligned_cols=102 Identities=11% Similarity=0.133 Sum_probs=80.1
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCC---CCCCeEEEEeeCCCCCCCC----CHHHHHhhhCCC
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDE---LRDAVLLVFANKQDLPNAM----NAAEITDKLGLH 73 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~iiv~nK~Dl~~~~----~~~~~~~~~~~~ 73 (110)
|+++-..+|++||++++++|..++.+++.+..|-.+++.... ...-|++|++||+|+.+.. +.....+++.
T Consensus 71 FqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~-- 148 (210)
T KOG0394|consen 71 FQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCK-- 148 (210)
T ss_pred hhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHH--
Confidence 456667899999999999999999999999888888876533 1257999999999997643 2333344432
Q ss_pred cccCcceEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 74 SLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 74 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
.+..++++++||+...||++.|..+.+..+.
T Consensus 149 --s~gnipyfEtSAK~~~NV~~AFe~ia~~aL~ 179 (210)
T KOG0394|consen 149 --SKGNIPYFETSAKEATNVDEAFEEIARRALA 179 (210)
T ss_pred --hcCCceeEEecccccccHHHHHHHHHHHHHh
Confidence 2457799999999999999999998887653
No 109
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.67 E-value=1.6e-15 Score=88.14 Aligned_cols=96 Identities=19% Similarity=0.288 Sum_probs=72.8
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCcc
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRH 79 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~ 79 (110)
+.++..+++++|++++|+|+++++++.....|+..+..... .+.|+++++||+|+.... ..++..... ...+
T Consensus 63 ~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~D~~~~~~~~~~~~~~~~-----~~~~ 136 (161)
T cd01861 63 RSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERG-NDVIIVLVGNKTDLSDKRQVSTEEGEKKA-----KELN 136 (161)
T ss_pred HHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEChhccccCccCHHHHHHHH-----HHhC
Confidence 45688899999999999999999889888888877654422 369999999999994332 222222221 1223
Q ss_pred eEEEeeecccCCCHHHHHHHHHHH
Q 044598 80 WYIQSTCATSGEGLYEGLDWLSNN 103 (110)
Q Consensus 80 ~~~~~~Sa~~~~~i~~l~~~l~~~ 103 (110)
.+++++||+++.|++++++++.+.
T Consensus 137 ~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 137 AMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHh
Confidence 678899999999999999999875
No 110
>PLN03118 Rab family protein; Provisional
Probab=99.67 E-value=2.9e-15 Score=90.90 Aligned_cols=101 Identities=21% Similarity=0.285 Sum_probs=72.8
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcC-CCCCCCeEEEEeeCCCCCCCCC--HHHHHhhhCCCcccC
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNE-DELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQ 77 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~iiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~ 77 (110)
|+.+|..+++++|++++|+|+++++++......+...+.. ....+.|+++|+||+|+..... .++..... ..
T Consensus 75 ~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~-----~~ 149 (211)
T PLN03118 75 FRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALA-----KE 149 (211)
T ss_pred hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHH-----HH
Confidence 3567899999999999999999988888776544333322 2224679999999999864332 22222211 12
Q ss_pred cceEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 78 RHWYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 78 ~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
.+..++++||+++.|++++++++.+.+..
T Consensus 150 ~~~~~~e~SAk~~~~v~~l~~~l~~~~~~ 178 (211)
T PLN03118 150 HGCLFLECSAKTRENVEQCFEELALKIME 178 (211)
T ss_pred cCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 34578999999999999999999988754
No 111
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.67 E-value=2.5e-15 Score=91.89 Aligned_cols=96 Identities=18% Similarity=0.166 Sum_probs=71.1
Q ss_pred HHhcc-cCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCcceEE
Q 044598 6 RHYFQ-NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYI 82 (110)
Q Consensus 6 ~~~~~-~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~ 82 (110)
..++. ++|++++|+|++++.++.....|+..+.......+.|+++|+||+|+.+.. ..++... +. ...+.++
T Consensus 66 ~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~-~a----~~~~~~~ 140 (221)
T cd04148 66 DSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRA-CA----VVFDCKF 140 (221)
T ss_pred hHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHH-HH----HHcCCeE
Confidence 44566 999999999999998888877777766544333579999999999985432 2222211 11 1223578
Q ss_pred EeeecccCCCHHHHHHHHHHHHHh
Q 044598 83 QSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 83 ~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
+++||++|.|++++|+++.+.+..
T Consensus 141 ~e~SA~~~~gv~~l~~~l~~~~~~ 164 (221)
T cd04148 141 IETSAGLQHNVDELLEGIVRQIRL 164 (221)
T ss_pred EEecCCCCCCHHHHHHHHHHHHHh
Confidence 899999999999999999998863
No 112
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.67 E-value=1.7e-15 Score=88.50 Aligned_cols=98 Identities=14% Similarity=0.149 Sum_probs=70.3
Q ss_pred chHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCC-CCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCcc
Q 044598 3 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDE-LRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRH 79 (110)
Q Consensus 3 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~ 79 (110)
..+..+++.+|++++|+|++++.+++....|+..+..... ..+.|+++|+||+|+.... ..++..... ...+
T Consensus 63 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~ 137 (165)
T cd04146 63 EQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLA-----SELG 137 (165)
T ss_pred chHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHH-----HHcC
Confidence 3567789999999999999999888877766655443221 2479999999999985432 222221111 1123
Q ss_pred eEEEeeecccC-CCHHHHHHHHHHHHH
Q 044598 80 WYIQSTCATSG-EGLYEGLDWLSNNIA 105 (110)
Q Consensus 80 ~~~~~~Sa~~~-~~i~~l~~~l~~~~~ 105 (110)
.+++++||++| .|++++|.++.+.+.
T Consensus 138 ~~~~e~Sa~~~~~~v~~~f~~l~~~~~ 164 (165)
T cd04146 138 CLFFEVSAAEDYDGVHSVFHELCREVR 164 (165)
T ss_pred CEEEEeCCCCCchhHHHHHHHHHHHHh
Confidence 47899999999 599999999988664
No 113
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.66 E-value=1.8e-15 Score=88.06 Aligned_cols=97 Identities=21% Similarity=0.298 Sum_probs=76.2
Q ss_pred chHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCC--CCCHHHHHhhhCCCcccCcce
Q 044598 3 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN--AMNAAEITDKLGLHSLRQRHW 80 (110)
Q Consensus 3 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~ 80 (110)
.++..+++++|++|+|+|.+++++++....|+..+..... .+.|+++++||.|+.. ..+.++..... ...+.
T Consensus 63 ~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~-----~~~~~ 136 (162)
T PF00071_consen 63 SLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFA-----KELGV 136 (162)
T ss_dssp HHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHH-----HHTTS
T ss_pred cccccccccccccccccccccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHHHH-----HHhCC
Confidence 4567889999999999999999999999888887765433 4689999999999875 33444433322 12236
Q ss_pred EEEeeecccCCCHHHHHHHHHHHHH
Q 044598 81 YIQSTCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 81 ~~~~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
+++++||+++.|+.++|..+.+.+.
T Consensus 137 ~~~e~Sa~~~~~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 137 PYFEVSAKNGENVKEIFQELIRKIL 161 (162)
T ss_dssp EEEEEBTTTTTTHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 8999999999999999999998874
No 114
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.66 E-value=4.7e-16 Score=89.04 Aligned_cols=101 Identities=24% Similarity=0.310 Sum_probs=77.5
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC--CCHHHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~ 78 (110)
||.+.++||++|.++|+|+|.+..+++..+..|+.++-....-+++-.++|+||+|.... .+.++ ++...+..
T Consensus 73 FRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reE-----G~kfAr~h 147 (209)
T KOG0080|consen 73 FRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREE-----GLKFARKH 147 (209)
T ss_pred hhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHH-----HHHHHHhh
Confidence 788999999999999999999999999888888887754433356678899999997522 22222 11112344
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
..-++++||++.+|+...|+.+...+.+
T Consensus 148 ~~LFiE~SAkt~~~V~~~FeelveKIi~ 175 (209)
T KOG0080|consen 148 RCLFIECSAKTRENVQCCFEELVEKIIE 175 (209)
T ss_pred CcEEEEcchhhhccHHHHHHHHHHHHhc
Confidence 5678899999999999999999887754
No 115
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.66 E-value=4.2e-16 Score=89.09 Aligned_cols=100 Identities=20% Similarity=0.258 Sum_probs=74.7
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~ 78 (110)
|..+-+.||++++++++|+|.++.++|...+.|..++..... ..+.++||+||+|+.+.. ..++.... ..+-
T Consensus 75 fHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlG-nei~l~IVGNKiDLEeeR~Vt~qeAe~Y-----Aesv 148 (218)
T KOG0088|consen 75 FHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLG-NEIELLIVGNKIDLEEERQVTRQEAEAY-----AESV 148 (218)
T ss_pred hhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhC-CeeEEEEecCcccHHHhhhhhHHHHHHH-----HHhh
Confidence 345567899999999999999999999999999888754422 357899999999996543 22222211 1123
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
+..++++||+.+.||.++|+.+.....+
T Consensus 149 GA~y~eTSAk~N~Gi~elFe~Lt~~MiE 176 (218)
T KOG0088|consen 149 GALYMETSAKDNVGISELFESLTAKMIE 176 (218)
T ss_pred chhheecccccccCHHHHHHHHHHHHHH
Confidence 4467799999999999999988776544
No 116
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.66 E-value=4.1e-15 Score=88.03 Aligned_cols=102 Identities=17% Similarity=0.173 Sum_probs=76.6
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~ 78 (110)
|+.+|..++..++++++|+|.++..++.....++..+.......+.|+++++||+|+.... ..++..... ...
T Consensus 62 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~-----~~~ 136 (180)
T cd04137 62 YSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELA-----ESW 136 (180)
T ss_pred hHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHH-----HHc
Confidence 3567888999999999999999988888887777777654333568999999999986422 222222111 112
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
..+++++||+++.|+.+++.++.+.+...
T Consensus 137 ~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 165 (180)
T cd04137 137 GAAFLESSARENENVEEAFELLIEEIEKV 165 (180)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 35788999999999999999999888654
No 117
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.65 E-value=1.2e-15 Score=89.32 Aligned_cols=100 Identities=11% Similarity=0.090 Sum_probs=69.3
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHH-HHHHHhcCCCCCCCeEEEEeeCCCCCCCCCH----HHHHhhhCCCccc
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARD-ELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AEITDKLGLHSLR 76 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~----~~~~~~~~~~~~~ 76 (110)
+..+..+++++|++++|+|++++.++..... |+..+... . .+.|+++|+||+|+.+.... +.+..... ..
T Consensus 61 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~-~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~--~~- 135 (166)
T cd01893 61 RANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRL-G-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMN--EF- 135 (166)
T ss_pred hHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-C-CCCCEEEEEEchhcccccchhHHHHHHHHHHH--HH-
Confidence 3456778899999999999999888887653 44433322 2 37899999999999654321 11111100 01
Q ss_pred CcceEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 77 QRHWYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 77 ~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
....+++++||++|.|++++|..+.+.+..
T Consensus 136 ~~~~~~~e~Sa~~~~~v~~lf~~~~~~~~~ 165 (166)
T cd01893 136 REIETCVECSAKTLINVSEVFYYAQKAVLH 165 (166)
T ss_pred hcccEEEEeccccccCHHHHHHHHHHHhcC
Confidence 111368899999999999999999887653
No 118
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.64 E-value=4.3e-15 Score=87.44 Aligned_cols=101 Identities=10% Similarity=0.065 Sum_probs=68.3
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHH-HHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCc------
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARD-ELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS------ 74 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~------ 74 (110)
+.++..+++++|++++|+|.+++.++..... |+..+... ..+.|+++++||+|+.+...............
T Consensus 62 ~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 139 (174)
T cd04135 62 DRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY--APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQG 139 (174)
T ss_pred cccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHH
Confidence 4577888999999999999999888877754 44433322 35799999999999854321111000000000
Q ss_pred ---ccCcc-eEEEeeecccCCCHHHHHHHHHHHH
Q 044598 75 ---LRQRH-WYIQSTCATSGEGLYEGLDWLSNNI 104 (110)
Q Consensus 75 ---~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~ 104 (110)
....+ .+++++||++|.|++++|+.+.+.+
T Consensus 140 ~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 140 QKLAKEIGAHCYVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred HHHHHHcCCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence 01112 3688999999999999999998764
No 119
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.64 E-value=4.9e-16 Score=91.58 Aligned_cols=95 Identities=9% Similarity=0.070 Sum_probs=67.1
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHH-HHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--------------CHHH
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNAM--------------NAAE 65 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--------------~~~~ 65 (110)
|+.+|..+++++|++++|+|.+++.++.... .|+..+... ..+.|+++++||+|+.... ..++
T Consensus 61 ~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 138 (173)
T cd04130 61 FDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSR 138 (173)
T ss_pred hccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHH
Confidence 3457788999999999999999998887764 455554432 2468999999999985432 1111
Q ss_pred HHhhhCCCcccCcc-eEEEeeecccCCCHHHHHHHHHH
Q 044598 66 ITDKLGLHSLRQRH-WYIQSTCATSGEGLYEGLDWLSN 102 (110)
Q Consensus 66 ~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~ 102 (110)
.... ....+ .+++++||++|.|++++|+.+.-
T Consensus 139 ~~~~-----a~~~~~~~~~e~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 139 AKAL-----AEKIGACEYIECSALTQKNLKEVFDTAIL 171 (173)
T ss_pred HHHH-----HHHhCCCeEEEEeCCCCCCHHHHHHHHHh
Confidence 1111 01122 37899999999999999988753
No 120
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.63 E-value=8e-15 Score=84.51 Aligned_cols=94 Identities=20% Similarity=0.302 Sum_probs=72.0
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCC--CCCCHHHHHhhhCCCcccCcc
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP--NAMNAAEITDKLGLHSLRQRH 79 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~ 79 (110)
++.+..+++++|++++|+|+++++++.....|+..+..... .+.|+++++||+|+. .....++...... ...
T Consensus 63 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~ 136 (159)
T cd00154 63 RSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAP-ENIPIILVGNKIDLEDQRQVSTEEAQQFAK-----ENG 136 (159)
T ss_pred HHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEEcccccccccccHHHHHHHHH-----HcC
Confidence 35678899999999999999998888887777776654422 469999999999995 2333444433321 235
Q ss_pred eEEEeeecccCCCHHHHHHHHH
Q 044598 80 WYIQSTCATSGEGLYEGLDWLS 101 (110)
Q Consensus 80 ~~~~~~Sa~~~~~i~~l~~~l~ 101 (110)
.+++++||+++.|++++++++.
T Consensus 137 ~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 137 LLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred CeEEEEecCCCCCHHHHHHHHh
Confidence 6899999999999999999986
No 121
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.63 E-value=9.8e-16 Score=85.40 Aligned_cols=98 Identities=13% Similarity=0.248 Sum_probs=76.8
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC-----CHHHHHhhhCCCcc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSL 75 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~-----~~~~~~~~~~~~~~ 75 (110)
||+...+||+++|+.++++|..+..+++....|+.++-+... ....+.+++||+|+.... ..+.+.+.
T Consensus 60 frsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k-~~v~l~llgnk~d~a~er~v~~ddg~kla~~------ 132 (192)
T KOG0083|consen 60 FRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAK-EAVALMLLGNKCDLAHERAVKRDDGEKLAEA------ 132 (192)
T ss_pred HhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHH-hhHhHhhhccccccchhhccccchHHHHHHH------
Confidence 678889999999999999999998899999889887744322 357789999999995321 12223333
Q ss_pred cCcceEEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 76 RQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 76 ~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
.++|++++||++|.|++-.|..|.+.+.+.
T Consensus 133 --y~ipfmetsaktg~nvd~af~~ia~~l~k~ 162 (192)
T KOG0083|consen 133 --YGIPFMETSAKTGFNVDLAFLAIAEELKKL 162 (192)
T ss_pred --HCCCceeccccccccHhHHHHHHHHHHHHh
Confidence 345788999999999999999999888654
No 122
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.61 E-value=1.5e-14 Score=83.82 Aligned_cols=98 Identities=20% Similarity=0.253 Sum_probs=72.8
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCcc
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRH 79 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~ 79 (110)
..++..+++++|++++|+|+++++++.+...++..+.........|+++++||+|+.+.. ..++..... ....
T Consensus 61 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~ 135 (160)
T cd00876 61 SAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALA-----KEWG 135 (160)
T ss_pred HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHH-----HHcC
Confidence 356778899999999999999988888777777766544332479999999999986532 222322221 1122
Q ss_pred eEEEeeecccCCCHHHHHHHHHHHH
Q 044598 80 WYIQSTCATSGEGLYEGLDWLSNNI 104 (110)
Q Consensus 80 ~~~~~~Sa~~~~~i~~l~~~l~~~~ 104 (110)
.+++++||+++.|+++++++|.+.+
T Consensus 136 ~~~~~~S~~~~~~i~~l~~~l~~~i 160 (160)
T cd00876 136 CPFIETSAKDNINIDEVFKLLVREI 160 (160)
T ss_pred CcEEEeccCCCCCHHHHHHHHHhhC
Confidence 5788999999999999999998753
No 123
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.61 E-value=2.1e-14 Score=84.07 Aligned_cols=98 Identities=14% Similarity=0.221 Sum_probs=69.4
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCC-HHHHHhhhCCCcccCcce
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHW 80 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~ 80 (110)
+..+..+++.+|++++|+|.+++.++.....|+..+... ...+.|.++++||+|+.+... ..+....+. .....
T Consensus 70 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~----~~~~~ 144 (169)
T cd04114 70 RSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQY-ANNKVITILVGNKIDLAERREVSQQRAEEFS----DAQDM 144 (169)
T ss_pred HHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccccCHHHHHHHH----HHcCC
Confidence 456678999999999999999887777666666544322 124689999999999864332 112222221 11225
Q ss_pred EEEeeecccCCCHHHHHHHHHHHH
Q 044598 81 YIQSTCATSGEGLYEGLDWLSNNI 104 (110)
Q Consensus 81 ~~~~~Sa~~~~~i~~l~~~l~~~~ 104 (110)
.++++||++|.|++++++++.+.+
T Consensus 145 ~~~~~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 145 YYLETSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred eEEEeeCCCCCCHHHHHHHHHHHh
Confidence 788999999999999999998764
No 124
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.60 E-value=3.9e-14 Score=85.10 Aligned_cols=100 Identities=21% Similarity=0.217 Sum_probs=78.3
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC--CCHHHHHhhhCCCcccCcc
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRH 79 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~ 79 (110)
..+...|++.+++.++|++.++..+|+....++..+.........|+++|+||+|+... .+.++.... .....
T Consensus 65 ~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~l-----a~~~~ 139 (196)
T KOG0395|consen 65 SAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKAL-----ARSWG 139 (196)
T ss_pred hHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHH-----HHhcC
Confidence 45678899999999999999999999998888887755444456899999999999763 333332221 12344
Q ss_pred eEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 80 WYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 80 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
++++++||+.+.+++++|..+.+.+..
T Consensus 140 ~~f~E~Sak~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 140 CAFIETSAKLNYNVDEVFYELVREIRL 166 (196)
T ss_pred CcEEEeeccCCcCHHHHHHHHHHHHHh
Confidence 568999999999999999999998765
No 125
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=1.6e-14 Score=81.42 Aligned_cols=99 Identities=18% Similarity=0.263 Sum_probs=76.6
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~ 78 (110)
||...++||+++.+.++|+|.+....++.+..|+.+...... ++..+++++||.|+.... +.++.++.- ...
T Consensus 73 fravtrsyyrgaagalmvyditrrstynhlsswl~dar~ltn-pnt~i~lignkadle~qrdv~yeeak~fa-----een 146 (215)
T KOG0097|consen 73 FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN-PNTVIFLIGNKADLESQRDVTYEEAKEFA-----EEN 146 (215)
T ss_pred HHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCC-CceEEEEecchhhhhhcccCcHHHHHHHH-----hhc
Confidence 577889999999999999999988888888888877654332 567899999999997654 344443321 134
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHH
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
+..++++||++|+|+++.|-...+.+-
T Consensus 147 gl~fle~saktg~nvedafle~akkiy 173 (215)
T KOG0097|consen 147 GLMFLEASAKTGQNVEDAFLETAKKIY 173 (215)
T ss_pred CeEEEEecccccCcHHHHHHHHHHHHH
Confidence 568899999999999999877666553
No 126
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=1.5e-15 Score=86.17 Aligned_cols=102 Identities=16% Similarity=0.254 Sum_probs=76.2
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCC-HHHHHhhhCCCcccCcc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRH 79 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~ 79 (110)
||++.++||+.|+++|+++|.++.+++.-+-+|+.++-+... ...-.++|+||.|+.+... .+++.+.+. ....
T Consensus 69 frsitqsyyrsahalilvydiscqpsfdclpewlreie~yan-~kvlkilvgnk~d~~drrevp~qigeefs----~~qd 143 (213)
T KOG0095|consen 69 FRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYAN-NKVLKILVGNKIDLADRREVPQQIGEEFS----EAQD 143 (213)
T ss_pred HHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhh-cceEEEeeccccchhhhhhhhHHHHHHHH----Hhhh
Confidence 688999999999999999999999898877778877654432 3566799999999865431 222333221 1123
Q ss_pred eEEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 80 WYIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 80 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
.-++++||+...|++.+|..++..+.+.
T Consensus 144 myfletsakea~nve~lf~~~a~rli~~ 171 (213)
T KOG0095|consen 144 MYFLETSAKEADNVEKLFLDLACRLISE 171 (213)
T ss_pred hhhhhhcccchhhHHHHHHHHHHHHHHH
Confidence 3577999999999999999998877654
No 127
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.59 E-value=2.5e-14 Score=84.53 Aligned_cols=95 Identities=21% Similarity=0.233 Sum_probs=64.8
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCH---HHHHhhhCCCcccC
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA---AEITDKLGLHSLRQ 77 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~---~~~~~~~~~~~~~~ 77 (110)
|+.++..+++++|++|+|+|+++..+......+. .... .++|+++|+||+|+.+.... +++...++.
T Consensus 80 ~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~-~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~----- 149 (179)
T cd01890 80 FSYEVSRSLAACEGALLLVDATQGVEAQTLANFY-LALE----NNLEIIPVINKIDLPSADPERVKQQIEDVLGL----- 149 (179)
T ss_pred hHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHH-HHHH----cCCCEEEEEECCCCCcCCHHHHHHHHHHHhCC-----
Confidence 3467788999999999999998754443332222 2221 46899999999998643211 122222221
Q ss_pred cceEEEeeecccCCCHHHHHHHHHHHHH
Q 044598 78 RHWYIQSTCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 78 ~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
....++++||++|+|++++++++.+.+.
T Consensus 150 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 150 DPSEAILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred CcccEEEeeccCCCCHHHHHHHHHhhCC
Confidence 1235889999999999999999988753
No 128
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.59 E-value=2.8e-14 Score=84.04 Aligned_cols=101 Identities=13% Similarity=0.143 Sum_probs=66.9
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHH-HHHHHhcCCCCCCCeEEEEeeCCCCCCCCCH-HHHHhhhCCC--c---
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARD-ELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDKLGLH--S--- 74 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~-~~~~~~~~~~--~--- 74 (110)
+.++..++.++|++++|+|.++++++..... |+..+... ..+.|+++|+||+|+.+.... +++....... .
T Consensus 63 ~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~ 140 (175)
T cd01870 63 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEG 140 (175)
T ss_pred hhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHH
Confidence 3456678899999999999998888877654 44444322 247899999999998543211 1110000000 0
Q ss_pred ---cc-CcceEEEeeecccCCCHHHHHHHHHHHH
Q 044598 75 ---LR-QRHWYIQSTCATSGEGLYEGLDWLSNNI 104 (110)
Q Consensus 75 ---~~-~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 104 (110)
.. ....++++|||++|.|++++|.++.+..
T Consensus 141 ~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 141 RDMANKIGAFGYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred HHHHHHcCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence 00 1124789999999999999999998654
No 129
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.56 E-value=6.1e-14 Score=82.14 Aligned_cols=91 Identities=25% Similarity=0.215 Sum_probs=62.4
Q ss_pred cccCCEEEEEEECCCh-hhHHHHHHHHHHHhcCC-CCCCCeEEEEeeCCCCCCCCCHHH-HHhhhCCCcccCcceEEEee
Q 044598 9 FQNTQGLIFVVDSNDR-DRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAMNAAE-ITDKLGLHSLRQRHWYIQST 85 (110)
Q Consensus 9 ~~~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~iiv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 85 (110)
++.+|++++|+|++++ .++.....|...+.... ...++|+++|+||+|+.+.....+ ....... ....+++++
T Consensus 76 ~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~ 151 (170)
T cd01898 76 IERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKE----LWGKPVFPI 151 (170)
T ss_pred HHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhh----CCCCCEEEE
Confidence 4469999999999987 56666555555543321 124689999999999865433222 2222111 124568899
Q ss_pred ecccCCCHHHHHHHHHHH
Q 044598 86 CATSGEGLYEGLDWLSNN 103 (110)
Q Consensus 86 Sa~~~~~i~~l~~~l~~~ 103 (110)
||+++.|++++++++.+.
T Consensus 152 Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 152 SALTGEGLDELLRKLAEL 169 (170)
T ss_pred ecCCCCCHHHHHHHHHhh
Confidence 999999999999999865
No 130
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.56 E-value=3.9e-14 Score=91.15 Aligned_cols=96 Identities=23% Similarity=0.172 Sum_probs=67.0
Q ss_pred HhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCC-CCCCCeEEEEeeCCCCCCCCCHH-HHHhhhCCCcccCcceEEEe
Q 044598 7 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAMNAA-EITDKLGLHSLRQRHWYIQS 84 (110)
Q Consensus 7 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 84 (110)
.++++|+++++|+|+++.+++++...|..++.... .+.++|+++|+||+|+.+..... ...... ......++++
T Consensus 232 rhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~----~~~~~~~i~~ 307 (335)
T PRK12299 232 KHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALE----LAALGGPVFL 307 (335)
T ss_pred HHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHH----HHhcCCCEEE
Confidence 35678999999999997666666666655553321 23478999999999986543211 111111 1112357889
Q ss_pred eecccCCCHHHHHHHHHHHHHh
Q 044598 85 TCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 85 ~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
+||++++|++++++++.+.+..
T Consensus 308 iSAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 308 ISAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred EEcCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999988764
No 131
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.55 E-value=1.4e-14 Score=84.83 Aligned_cols=94 Identities=13% Similarity=0.092 Sum_probs=65.3
Q ss_pred chHHHhcccCCEEEEEEECCChhhHHHHHH-HHHHHhcCCCCCCCeEEEEeeCCCCCCCCCH-------------HHHHh
Q 044598 3 PLWRHYFQNTQGLIFVVDSNDRDRVVEARD-ELHRMLNEDELRDAVLLVFANKQDLPNAMNA-------------AEITD 68 (110)
Q Consensus 3 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~-------------~~~~~ 68 (110)
.++..+++.+|++++|+|++++.++..... |+..+... ..+.|+++|+||+|+.+.... ++...
T Consensus 63 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~ 140 (171)
T cd00157 63 RLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHY--CPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEK 140 (171)
T ss_pred ccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHH
Confidence 455677899999999999999888776654 44433322 147999999999998654321 11111
Q ss_pred hhCCCcccCcceEEEeeecccCCCHHHHHHHHHH
Q 044598 69 KLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 102 (110)
Q Consensus 69 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 102 (110)
... .....+++++||++|.|+++++.++.+
T Consensus 141 ~~~----~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 141 LAK----EIGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred HHH----HhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence 110 112237899999999999999999875
No 132
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.54 E-value=1.4e-13 Score=82.11 Aligned_cols=95 Identities=11% Similarity=0.136 Sum_probs=66.8
Q ss_pred hHHHhcccCCEEEEEEECCChhhHHHHH-HHHHHHhcCCCCCCCeEEEEeeCCCCCCCC------------CHHHHHhhh
Q 044598 4 LWRHYFQNTQGLIFVVDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNAM------------NAAEITDKL 70 (110)
Q Consensus 4 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~------------~~~~~~~~~ 70 (110)
++..++++++++++++|.++++++.... .|+..+... ..+.|+++|+||+|+.... ..++.. .+
T Consensus 65 ~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~ 141 (187)
T cd04129 65 LRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRY--CPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGK-RV 141 (187)
T ss_pred cchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHH-HH
Confidence 4456788999999999999988888775 455555433 2469999999999984321 011111 11
Q ss_pred CCCcccCc-ceEEEeeecccCCCHHHHHHHHHHHHH
Q 044598 71 GLHSLRQR-HWYIQSTCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 71 ~~~~~~~~-~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
. ... ..+++++||++|.|++++|+++.+.+.
T Consensus 142 ~----~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~ 173 (187)
T cd04129 142 A----KEIGAKKYMECSALTGEGVDDVFEAATRAAL 173 (187)
T ss_pred H----HHhCCcEEEEccCCCCCCHHHHHHHHHHHHh
Confidence 0 111 236889999999999999999997764
No 133
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.54 E-value=2.2e-13 Score=82.94 Aligned_cols=100 Identities=16% Similarity=0.188 Sum_probs=74.4
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceE
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWY 81 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 81 (110)
+.++..|+.+++++++|+|.++..++.....|+..+.... .+.|+++++||+|+.......+..... ...++.
T Consensus 72 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~i~lv~nK~Dl~~~~~~~~~~~~~-----~~~~~~ 144 (215)
T PTZ00132 72 GGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVC--ENIPIVLVGNKVDVKDRQVKARQITFH-----RKKNLQ 144 (215)
T ss_pred hhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccCccccCCHHHHHHH-----HHcCCE
Confidence 4567889999999999999999888888777777665332 468999999999985432211111111 123457
Q ss_pred EEeeecccCCCHHHHHHHHHHHHHhhc
Q 044598 82 IQSTCATSGEGLYEGLDWLSNNIANKV 108 (110)
Q Consensus 82 ~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 108 (110)
++++||++|.|+++.|.++++.+..+.
T Consensus 145 ~~e~Sa~~~~~v~~~f~~ia~~l~~~p 171 (215)
T PTZ00132 145 YYDISAKSNYNFEKPFLWLARRLTNDP 171 (215)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHhhcc
Confidence 889999999999999999999886543
No 134
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.52 E-value=3.7e-14 Score=87.92 Aligned_cols=92 Identities=20% Similarity=0.191 Sum_probs=67.8
Q ss_pred cchHHHhcccCCEEEEEEECCChh-hHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHH-HHHhhhCCCcccCcc
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-EITDKLGLHSLRQRH 79 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~ 79 (110)
+.+.+.+++++|++++|+|++++. ++.....|+..+. . .+.|+++|+||+|+.+..... +....+ ...+
T Consensus 27 ~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~-~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~-----~~~g 97 (245)
T TIGR00157 27 NELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAE-A---QNIEPIIVLNKIDLLDDEDMEKEQLDIY-----RNIG 97 (245)
T ss_pred ceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHH-H---CCCCEEEEEECcccCCCHHHHHHHHHHH-----HHCC
Confidence 456778999999999999999876 6777777765432 2 578999999999996432211 112221 2245
Q ss_pred eEEEeeecccCCCHHHHHHHHHH
Q 044598 80 WYIQSTCATSGEGLYEGLDWLSN 102 (110)
Q Consensus 80 ~~~~~~Sa~~~~~i~~l~~~l~~ 102 (110)
.+++++||++|+|++++++.+.+
T Consensus 98 ~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 98 YQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred CeEEEEecCCchhHHHHHhhhcC
Confidence 68899999999999999988764
No 135
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.50 E-value=2.2e-13 Score=87.55 Aligned_cols=94 Identities=23% Similarity=0.219 Sum_probs=63.0
Q ss_pred HhcccCCEEEEEEECCCh---hhHHHHHHHHHHHhcC-CCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEE
Q 044598 7 HYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNE-DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYI 82 (110)
Q Consensus 7 ~~~~~~~~~i~v~d~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (110)
.++++|+++++|+|+++. .++++...+..++... ....++|+++|+||+|+.+....+++.+.+. .....++
T Consensus 231 rhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~----~~~~~~v 306 (329)
T TIGR02729 231 KHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELK----KALGKPV 306 (329)
T ss_pred HHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHH----HHcCCcE
Confidence 346689999999999865 3445544444433222 1234789999999999865432222222221 1113478
Q ss_pred EeeecccCCCHHHHHHHHHHHH
Q 044598 83 QSTCATSGEGLYEGLDWLSNNI 104 (110)
Q Consensus 83 ~~~Sa~~~~~i~~l~~~l~~~~ 104 (110)
+++||++++|++++++++.+.+
T Consensus 307 i~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 307 FPISALTGEGLDELLYALAELL 328 (329)
T ss_pred EEEEccCCcCHHHHHHHHHHHh
Confidence 8999999999999999998765
No 136
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.49 E-value=4.1e-13 Score=78.55 Aligned_cols=87 Identities=15% Similarity=0.147 Sum_probs=59.0
Q ss_pred cCCEEEEEEECCChhhH--HHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEEeeecc
Q 044598 11 NTQGLIFVVDSNDRDRV--VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCAT 88 (110)
Q Consensus 11 ~~~~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 88 (110)
.+|++++|+|+++..++ .....++..+... ..+.|+++|+||+|+.+.....+.... .....++++++||+
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~Sa~ 151 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPL--FKNKPVIVVLNKIDLLTFEDLSEIEEE-----EELEGEEVLKISTL 151 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhh--cCcCCeEEEEEccccCchhhHHHHHHh-----hhhccCceEEEEec
Confidence 36899999999875432 3333444444322 247899999999998654322221111 11234578999999
Q ss_pred cCCCHHHHHHHHHHHH
Q 044598 89 SGEGLYEGLDWLSNNI 104 (110)
Q Consensus 89 ~~~~i~~l~~~l~~~~ 104 (110)
+|.|++++++++.+.+
T Consensus 152 ~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 152 TEEGVDEVKNKACELL 167 (168)
T ss_pred ccCCHHHHHHHHHHHh
Confidence 9999999999998876
No 137
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.44 E-value=3.8e-13 Score=76.85 Aligned_cols=82 Identities=15% Similarity=0.133 Sum_probs=54.9
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC-CCHHHHHhhhCCCcccCcceEEEeee
Q 044598 8 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-MNAAEITDKLGLHSLRQRHWYIQSTC 86 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~S 86 (110)
.++++|++++|+|++++.++.. ..| ... ...|+++|+||+|+.+. ...++....... ....+++++|
T Consensus 59 ~~~~ad~vilv~d~~~~~s~~~-~~~-~~~------~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~S 126 (142)
T TIGR02528 59 TAADADVIALVQSATDPESRFP-PGF-ASI------FVKPVIGLVTKIDLAEADVDIERAKELLET----AGAEPIFEIS 126 (142)
T ss_pred HhhcCCEEEEEecCCCCCcCCC-hhH-HHh------ccCCeEEEEEeeccCCcccCHHHHHHHHHH----cCCCcEEEEe
Confidence 4789999999999998776533 122 222 13499999999998642 222222222110 1112678999
Q ss_pred cccCCCHHHHHHHHH
Q 044598 87 ATSGEGLYEGLDWLS 101 (110)
Q Consensus 87 a~~~~~i~~l~~~l~ 101 (110)
|++|.|++++++++.
T Consensus 127 a~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 127 SVDEQGLEALVDYLN 141 (142)
T ss_pred cCCCCCHHHHHHHHh
Confidence 999999999999874
No 138
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=2.6e-13 Score=78.18 Aligned_cols=103 Identities=30% Similarity=0.598 Sum_probs=83.9
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCC---------
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL--------- 72 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~--------- 72 (110)
|..|+.|+-.+|+++|++|+-+.+.+.+++..+..++....+...|+++.+||+|.+.+...++....+++
T Consensus 78 rr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~ 157 (193)
T KOG0077|consen 78 RRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGK 157 (193)
T ss_pred HHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhccccc
Confidence 56899999999999999999999999998888888887776788999999999999887766665443321
Q ss_pred ---CcccCcceEEEeeecccCCCHHHHHHHHHHHH
Q 044598 73 ---HSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 104 (110)
Q Consensus 73 ---~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 104 (110)
.....++..++.||...+.|..+.|.|+...+
T Consensus 158 v~~~~~~~rp~evfmcsi~~~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 158 VNLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
T ss_pred ccccCCCCCeEEEEEEEEEccCccceeeeehhhhc
Confidence 11234677899999999999889999987654
No 139
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.42 E-value=5.4e-13 Score=77.53 Aligned_cols=94 Identities=17% Similarity=0.104 Sum_probs=62.5
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceE
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWY 81 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 81 (110)
+.+++++.+++|++++|+|++++..... ..+...... .++|+++|+||+|+.+........... .....+
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~--~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~-----~~~~~~ 72 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRS--RKLERYVLE---LGKKLLIVLNKADLVPKEVLEKWKSIK-----ESEGIP 72 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCC--HHHHHHHHh---CCCcEEEEEEhHHhCCHHHHHHHHHHH-----HhCCCc
Confidence 5678889999999999999976532111 122222222 368999999999985321111111111 112346
Q ss_pred EEeeecccCCCHHHHHHHHHHHHH
Q 044598 82 IQSTCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 82 ~~~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
++.+||+++.|++++++.+.+.+.
T Consensus 73 ~~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 73 VVYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred EEEEEccccccHHHHHHHHHHHHh
Confidence 789999999999999999988764
No 140
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.42 E-value=2.5e-12 Score=75.14 Aligned_cols=98 Identities=22% Similarity=0.217 Sum_probs=63.4
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhh---hCCCc--cc
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDK---LGLHS--LR 76 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~---~~~~~--~~ 76 (110)
+.+|..++..+|++++|+|+++.... +....+..+ .. .++|+++|+||+|+.+... +.+... ..... ..
T Consensus 64 ~~~~~~~~~~~d~il~v~d~~~~~~~-~~~~~~~~~-~~---~~~p~ivv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~ 137 (168)
T cd01887 64 TNMRARGASLTDIAILVVAADDGVMP-QTIEAIKLA-KA---ANVPFIVALNKIDKPNANP-ERVKNELSELGLQGEDEW 137 (168)
T ss_pred HHHHHHHHhhcCEEEEEEECCCCccH-HHHHHHHHH-HH---cCCCEEEEEEceecccccH-HHHHHHHHHhhccccccc
Confidence 45678889999999999999864221 111222222 11 4689999999999864321 111111 11100 11
Q ss_pred CcceEEEeeecccCCCHHHHHHHHHHHHH
Q 044598 77 QRHWYIQSTCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 77 ~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
...++++++||++|.|++++++++.+...
T Consensus 138 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 138 GGDVQIVPTSAKTGEGIDDLLEAILLLAE 166 (168)
T ss_pred cCcCcEEEeecccCCCHHHHHHHHHHhhh
Confidence 23467899999999999999999988754
No 141
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.42 E-value=2.3e-12 Score=77.78 Aligned_cols=87 Identities=24% Similarity=0.262 Sum_probs=59.8
Q ss_pred cccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEEeeecc
Q 044598 9 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCAT 88 (110)
Q Consensus 9 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 88 (110)
+.++|++++|+|++++.+......+. ..+......++|+++|+||+|+.+..... .. ......+++++||+
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~~~~-~~l~~~~~~~~~viiV~NK~Dl~~~~~~~---~~-----~~~~~~~~~~~Sa~ 188 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIETVE-KVLKELGAEDIPMILVLNKIDLLDDEELE---ER-----LEAGRPDAVFISAK 188 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHHHHH-HHHHHcCcCCCCEEEEEEccccCChHHHH---HH-----hhcCCCceEEEEcC
Confidence 67899999999998776554433222 22222222468999999999986542211 11 11234468899999
Q ss_pred cCCCHHHHHHHHHHHH
Q 044598 89 SGEGLYEGLDWLSNNI 104 (110)
Q Consensus 89 ~~~~i~~l~~~l~~~~ 104 (110)
++.|+++++++|.+.+
T Consensus 189 ~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 189 TGEGLDELLEAIEELL 204 (204)
T ss_pred CCCCHHHHHHHHHhhC
Confidence 9999999999998753
No 142
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.42 E-value=1.2e-12 Score=76.89 Aligned_cols=94 Identities=18% Similarity=0.109 Sum_probs=62.6
Q ss_pred HhcccCCEEEEEEECCCh------hhHHHHHHHHHHHhcCCC------CCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCc
Q 044598 7 HYFQNTQGLIFVVDSNDR------DRVVEARDELHRMLNEDE------LRDAVLLVFANKQDLPNAMNAAEITDKLGLHS 74 (110)
Q Consensus 7 ~~~~~~~~~i~v~d~~~~------~~~~~~~~~~~~~~~~~~------~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~ 74 (110)
.+++++|++++|+|++++ .++.+...+...+..... ..++|+++|+||+|+..............
T Consensus 70 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~--- 146 (176)
T cd01881 70 AHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVREL--- 146 (176)
T ss_pred HHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHH---
Confidence 457889999999999876 345555445444432221 14689999999999865432222100010
Q ss_pred ccCcceEEEeeecccCCCHHHHHHHHHHH
Q 044598 75 LRQRHWYIQSTCATSGEGLYEGLDWLSNN 103 (110)
Q Consensus 75 ~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 103 (110)
.......++++||+++.|++++++++...
T Consensus 147 ~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 147 ALEEGAEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred hcCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence 11234568899999999999999998764
No 143
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.42 E-value=3.6e-12 Score=74.58 Aligned_cols=96 Identities=27% Similarity=0.326 Sum_probs=74.6
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcce
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 80 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 80 (110)
|+.||+.+.+++.++++++|.+.+..+ .... +..++... ...|+++++||.|+.++.+.+.+.+.+.... ...
T Consensus 81 F~fm~~~l~~ga~gaivlVDss~~~~~-~a~~-ii~f~~~~--~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~---~~~ 153 (187)
T COG2229 81 FKFMWEILSRGAVGAIVLVDSSRPITF-HAEE-IIDFLTSR--NPIPVVVAINKQDLFDALPPEKIREALKLEL---LSV 153 (187)
T ss_pred HHHHHHHHhCCcceEEEEEecCCCcch-HHHH-HHHHHhhc--cCCCEEEEeeccccCCCCCHHHHHHHHHhcc---CCC
Confidence 578999999999999999999988776 3333 33333331 1299999999999999988888887765421 456
Q ss_pred EEEeeecccCCCHHHHHHHHHHH
Q 044598 81 YIQSTCATSGEGLYEGLDWLSNN 103 (110)
Q Consensus 81 ~~~~~Sa~~~~~i~~l~~~l~~~ 103 (110)
++++++|..+.+..+.+..+...
T Consensus 154 ~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 154 PVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred ceeeeecccchhHHHHHHHHHhh
Confidence 89999999999999888777655
No 144
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.41 E-value=1.3e-12 Score=78.27 Aligned_cols=98 Identities=18% Similarity=0.077 Sum_probs=63.1
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCC-HHHHHhhh---CCCccc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKL---GLHSLR 76 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~-~~~~~~~~---~~~~~~ 76 (110)
|+.++..+++++|++++|+|++++... ....+.. . ..++|+++|+||+|+.+... ........ ......
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~--~~~~l~~---~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS--LIPRLRL---F--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc--cchhHHH---h--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcC
Confidence 467889999999999999999865321 1111111 1 14689999999999864322 22222111 000011
Q ss_pred CcceEEEeeecccCCCHHHHHHHHHHHHH
Q 044598 77 QRHWYIQSTCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 77 ~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
.....++.+||++|.|++++++++.+.+.
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 11125789999999999999999988764
No 145
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.40 E-value=4e-12 Score=85.36 Aligned_cols=94 Identities=12% Similarity=0.093 Sum_probs=61.7
Q ss_pred HhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEEeee
Q 044598 7 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTC 86 (110)
Q Consensus 7 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 86 (110)
.++++||++++|+|+++..+..+. .++..+. . .++|+++|+||+|+.+.....................+++++|
T Consensus 289 ~~i~~ad~vilV~Da~~~~s~~~~-~~~~~~~-~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~S 363 (472)
T PRK03003 289 AAIEAAEVAVVLIDASEPISEQDQ-RVLSMVI-E---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNIS 363 (472)
T ss_pred HHHhcCCEEEEEEeCCCCCCHHHH-HHHHHHH-H---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEE
Confidence 357899999999999876555443 2333332 2 4689999999999965322111111111000111234788999
Q ss_pred cccCCCHHHHHHHHHHHHH
Q 044598 87 ATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 87 a~~~~~i~~l~~~l~~~~~ 105 (110)
|++|.|++++|+.+.+...
T Consensus 364 Ak~g~gv~~lf~~i~~~~~ 382 (472)
T PRK03003 364 AKTGRAVDKLVPALETALE 382 (472)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999988764
No 146
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.39 E-value=1.1e-11 Score=73.48 Aligned_cols=99 Identities=24% Similarity=0.235 Sum_probs=66.3
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCH----HHHHhhhCCCcc--
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AEITDKLGLHSL-- 75 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~----~~~~~~~~~~~~-- 75 (110)
+..+..+++.+|++++|+|+.++..... ..++.... . .+.|+++++||+|+...... +.+...+.....
T Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~-~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (189)
T cd00881 76 SSEVIRGLSVSDGAILVVDANEGVQPQT-REHLRIAR-E---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFIS 150 (189)
T ss_pred HHHHHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHH-H---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccc
Confidence 3467888999999999999986533221 22222222 1 47899999999998653221 222222221110
Q ss_pred -------cCcceEEEeeecccCCCHHHHHHHHHHHHH
Q 044598 76 -------RQRHWYIQSTCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 76 -------~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
.....+++++||++|.|+++++.++.+.+.
T Consensus 151 ~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 151 TKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred hhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 124568999999999999999999998764
No 147
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.39 E-value=3.1e-12 Score=85.93 Aligned_cols=92 Identities=17% Similarity=0.207 Sum_probs=61.6
Q ss_pred chHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEE
Q 044598 3 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYI 82 (110)
Q Consensus 3 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (110)
..+..+++.||++|+|+|+++..+... ..+...+.. .++|+++|+||+|+..... +......+ ... ..
T Consensus 109 ~~~~~~~~~aD~il~VvD~~~~~s~~~--~~i~~~l~~---~~~piilV~NK~Dl~~~~~--~~~~~~~~----g~~-~~ 176 (472)
T PRK03003 109 EQAEVAMRTADAVLFVVDATVGATATD--EAVARVLRR---SGKPVILAANKVDDERGEA--DAAALWSL----GLG-EP 176 (472)
T ss_pred HHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCCccch--hhHHHHhc----CCC-Ce
Confidence 346678999999999999987544322 223333332 4699999999999864321 11111111 111 23
Q ss_pred EeeecccCCCHHHHHHHHHHHHHh
Q 044598 83 QSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 83 ~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
+++||++|.|++++++++.+.+.+
T Consensus 177 ~~iSA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 177 HPVSALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred EEEEcCCCCCcHHHHHHHHhhccc
Confidence 589999999999999999988754
No 148
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.39 E-value=7.5e-12 Score=82.75 Aligned_cols=92 Identities=21% Similarity=0.221 Sum_probs=61.0
Q ss_pred hcccCCEEEEEEECCCh---hhHHHHHHHHHHHhcC-CCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEE
Q 044598 8 YFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNE-DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQ 83 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (110)
++++|+++++|+|+++. +.+++...+..++... ..+.++|.++|+||+|+... .+.+..... ....+++
T Consensus 233 hier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--~e~l~~l~~-----~l~~~i~ 305 (424)
T PRK12297 233 HIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA--EENLEEFKE-----KLGPKVF 305 (424)
T ss_pred HHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC--HHHHHHHHH-----HhCCcEE
Confidence 35679999999999754 3444444444443322 12357999999999998432 122211110 0114688
Q ss_pred eeecccCCCHHHHHHHHHHHHHh
Q 044598 84 STCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 84 ~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
++||++++|++++++++.+.+..
T Consensus 306 ~iSA~tgeGI~eL~~~L~~~l~~ 328 (424)
T PRK12297 306 PISALTGQGLDELLYAVAELLEE 328 (424)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999887754
No 149
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.38 E-value=7.5e-12 Score=72.38 Aligned_cols=90 Identities=21% Similarity=0.171 Sum_probs=59.5
Q ss_pred hHHHhcc--cCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceE
Q 044598 4 LWRHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWY 81 (110)
Q Consensus 4 ~~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 81 (110)
++..++. ++|++++|+|+.+++... .++..+.. .++|+++++||+|+.+..........+. ...+.+
T Consensus 65 ~~~~~~~~~~~d~vi~v~d~~~~~~~~---~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~----~~~~~~ 133 (158)
T cd01879 65 VARDFLLGEKPDLIVNVVDATNLERNL---YLTLQLLE----LGLPVVVALNMIDEAEKRGIKIDLDKLS----ELLGVP 133 (158)
T ss_pred HHHHHhcCCCCcEEEEEeeCCcchhHH---HHHHHHHH----cCCCEEEEEehhhhcccccchhhHHHHH----HhhCCC
Confidence 4566775 999999999998753322 22222221 3689999999999965432111111110 112347
Q ss_pred EEeeecccCCCHHHHHHHHHHHH
Q 044598 82 IQSTCATSGEGLYEGLDWLSNNI 104 (110)
Q Consensus 82 ~~~~Sa~~~~~i~~l~~~l~~~~ 104 (110)
++++||.++.|++++++++.+..
T Consensus 134 ~~~iSa~~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 134 VVPTSARKGEGIDELKDAIAELA 156 (158)
T ss_pred eEEEEccCCCCHHHHHHHHHHHh
Confidence 88999999999999999998765
No 150
>PRK04213 GTP-binding protein; Provisional
Probab=99.38 E-value=4.6e-12 Score=76.27 Aligned_cols=101 Identities=23% Similarity=0.250 Sum_probs=60.2
Q ss_pred cchHHHhcc----cCCEEEEEEECCChhhH-H--------HHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHH
Q 044598 2 RPLWRHYFQ----NTQGLIFVVDSNDRDRV-V--------EARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEI 66 (110)
Q Consensus 2 ~~~~~~~~~----~~~~~i~v~d~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~ 66 (110)
+++|..|+. .++++++|+|++..... . .....+...+.. .++|+++|+||+|+.+.. ..+++
T Consensus 77 ~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~ 153 (201)
T PRK04213 77 KDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNRDEVLDEI 153 (201)
T ss_pred HHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCcHHHHHHHH
Confidence 345555654 45789999998642211 0 011112222222 468999999999986443 12233
Q ss_pred HhhhCCCc-ccCcceEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 67 TDKLGLHS-LRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 67 ~~~~~~~~-~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
...++... ......+++++||++| |+++++++|.+.+..
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 154 AERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred HHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 33333211 1111236889999999 999999999988754
No 151
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.38 E-value=6.4e-12 Score=86.26 Aligned_cols=96 Identities=21% Similarity=0.240 Sum_probs=65.8
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCH---HHHHhhhCCCcccC
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA---AEITDKLGLHSLRQ 77 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~---~~~~~~~~~~~~~~ 77 (110)
|...+..+++.||++|+|+|+++..+......|.. ... .+.|+++|+||+|+.+.... +++...++.
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~-~~~----~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~----- 152 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYL-ALE----NDLEIIPVINKIDLPSADPERVKKEIEEVIGL----- 152 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHH-HHH----cCCCEEEEEECcCCCccCHHHHHHHHHHHhCC-----
Confidence 34567889999999999999987544433333322 221 36799999999998654321 223333222
Q ss_pred cceEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 78 RHWYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 78 ~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
....++++||++|.|++++++++.+.+..
T Consensus 153 ~~~~vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 153 DASEAILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred CcceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence 11257899999999999999999987753
No 152
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.37 E-value=3.5e-12 Score=80.20 Aligned_cols=92 Identities=16% Similarity=0.083 Sum_probs=61.1
Q ss_pred HHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHH-HHHhhhCCCcccCcceEEE
Q 044598 5 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-EITDKLGLHSLRQRHWYIQ 83 (110)
Q Consensus 5 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (110)
...+++++|++++|+|+++..+.. ..+...+.. .+.|+++|+||+|+.+..... ........ ....+++
T Consensus 73 ~~~~l~~aDvvl~VvD~~~~~~~~---~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~----~~~~~v~ 142 (270)
T TIGR00436 73 ARSAIGGVDLILFVVDSDQWNGDG---EFVLTKLQN---LKRPVVLTRNKLDNKFKDKLLPLIDKYAIL----EDFKDIV 142 (270)
T ss_pred HHHHHhhCCEEEEEEECCCCCchH---HHHHHHHHh---cCCCEEEEEECeeCCCHHHHHHHHHHHHhh----cCCCceE
Confidence 345789999999999998754432 223333322 468999999999985322111 11111111 1112688
Q ss_pred eeecccCCCHHHHHHHHHHHHHh
Q 044598 84 STCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 84 ~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
++||++|.|++++++++.+.+..
T Consensus 143 ~iSA~~g~gi~~L~~~l~~~l~~ 165 (270)
T TIGR00436 143 PISALTGDNTSFLAAFIEVHLPE 165 (270)
T ss_pred EEecCCCCCHHHHHHHHHHhCCC
Confidence 99999999999999999988754
No 153
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.37 E-value=2.7e-12 Score=77.60 Aligned_cols=97 Identities=13% Similarity=0.112 Sum_probs=58.8
Q ss_pred HHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCH----HHHHhhhCCCcccCcce
Q 044598 5 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AEITDKLGLHSLRQRHW 80 (110)
Q Consensus 5 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~ 80 (110)
+...+..+|++++|+|++++.........+..+. . ....|+++|+||+|+.+.... +++...+. .......
T Consensus 100 ~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~-~--~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~~~--~~~~~~~ 174 (203)
T cd01888 100 MLSGAAVMDGALLLIAANEPCPQPQTSEHLAALE-I--MGLKHIIIVQNKIDLVKEEQALENYEQIKKFVK--GTIAENA 174 (203)
T ss_pred HHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHH-H--cCCCcEEEEEEchhccCHHHHHHHHHHHHHHHh--ccccCCC
Confidence 3445667899999999986311111122222221 1 123579999999998643211 11222211 0112345
Q ss_pred EEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 81 YIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 81 ~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
+++++||++|+|++++++++.+.+..
T Consensus 175 ~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 175 PIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred cEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 78999999999999999999887653
No 154
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.37 E-value=1.4e-11 Score=69.94 Aligned_cols=94 Identities=27% Similarity=0.385 Sum_probs=65.4
Q ss_pred hHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHH--hhhCCCcccCcceE
Q 044598 4 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEIT--DKLGLHSLRQRHWY 81 (110)
Q Consensus 4 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~--~~~~~~~~~~~~~~ 81 (110)
.+..+++.+|++++|+|++++........++..........++|+++++||+|+.......... ... ......+
T Consensus 61 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~----~~~~~~~ 136 (157)
T cd00882 61 LRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQL----AKELGVP 136 (157)
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHH----HhhcCCc
Confidence 4456788999999999999887766665542222222233579999999999986554322211 111 1223457
Q ss_pred EEeeecccCCCHHHHHHHHH
Q 044598 82 IQSTCATSGEGLYEGLDWLS 101 (110)
Q Consensus 82 ~~~~Sa~~~~~i~~l~~~l~ 101 (110)
++++|+.++.|+.++++++.
T Consensus 137 ~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 137 YFETSAKTGENVEELFEELA 156 (157)
T ss_pred EEEEecCCCCChHHHHHHHh
Confidence 89999999999999999985
No 155
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.37 E-value=3.8e-12 Score=74.00 Aligned_cols=92 Identities=22% Similarity=0.140 Sum_probs=56.2
Q ss_pred HHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCC----HHHHHhhhCCCcccCcce
Q 044598 5 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----AAEITDKLGLHSLRQRHW 80 (110)
Q Consensus 5 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~ 80 (110)
...+++++|++++|+|+++.. ..+....+.. +... ..+|+++++||+|+.+... .+++.+.+... .....
T Consensus 68 ~~~~~~~ad~ii~V~d~~~~~-~~~~~~~~~~-~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~ 141 (164)
T cd04171 68 MLAGAGGIDLVLLVVAADEGI-MPQTREHLEI-LELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGT--FLADA 141 (164)
T ss_pred HHhhhhcCCEEEEEEECCCCc-cHhHHHHHHH-HHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhc--CcCCC
Confidence 345678999999999997621 1111121211 1111 2358999999999865321 12222222110 01345
Q ss_pred EEEeeecccCCCHHHHHHHHHH
Q 044598 81 YIQSTCATSGEGLYEGLDWLSN 102 (110)
Q Consensus 81 ~~~~~Sa~~~~~i~~l~~~l~~ 102 (110)
+++++||++|.|++++++.+.+
T Consensus 142 ~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 142 PIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred cEEEEeCCCCcCHHHHHHHHhh
Confidence 8999999999999999998764
No 156
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.37 E-value=4.2e-12 Score=85.14 Aligned_cols=94 Identities=28% Similarity=0.317 Sum_probs=61.3
Q ss_pred hcccCCEEEEEEECCCh----hhHHHHH---HHHHHHhcC-------CCCCCCeEEEEeeCCCCCCCCCHH-HHHhhhCC
Q 044598 8 YFQNTQGLIFVVDSNDR----DRVVEAR---DELHRMLNE-------DELRDAVLLVFANKQDLPNAMNAA-EITDKLGL 72 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~~~----~~~~~~~---~~~~~~~~~-------~~~~~~~~iiv~nK~Dl~~~~~~~-~~~~~~~~ 72 (110)
++++|+++++|+|+++. +.+.+.. ..+..+... ..+.++|.++|+||+|+.+..... .+...+
T Consensus 233 hieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l-- 310 (500)
T PRK12296 233 HIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPEL-- 310 (500)
T ss_pred HHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHH--
Confidence 47889999999999752 2233322 233332210 023578999999999986433211 112121
Q ss_pred CcccCcceEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 73 HSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 73 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
....++++++||++++|+++++.+|.+.+..
T Consensus 311 ---~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 311 ---EARGWPVFEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred ---HHcCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 1234689999999999999999999888754
No 157
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.36 E-value=5.3e-12 Score=73.61 Aligned_cols=88 Identities=18% Similarity=0.173 Sum_probs=60.2
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEEeeec
Q 044598 8 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 87 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 87 (110)
.++++|++++|+|+++..+.. ..++... ..++|+++++||+|+.+. ..+.+.+.+.. .....+++++||
T Consensus 61 ~~~~ad~il~v~d~~~~~s~~--~~~~~~~-----~~~~~ii~v~nK~Dl~~~-~~~~~~~~~~~---~~~~~p~~~~Sa 129 (158)
T PRK15467 61 TLQDVDMLIYVHGANDPESRL--PAGLLDI-----GVSKRQIAVISKTDMPDA-DVAATRKLLLE---TGFEEPIFELNS 129 (158)
T ss_pred HHhcCCEEEEEEeCCCccccc--CHHHHhc-----cCCCCeEEEEEccccCcc-cHHHHHHHHHH---cCCCCCEEEEEC
Confidence 478999999999998764431 1233332 136789999999998653 33333332211 111247899999
Q ss_pred ccCCCHHHHHHHHHHHHHh
Q 044598 88 TSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 88 ~~~~~i~~l~~~l~~~~~~ 106 (110)
++|+|++++++.+.+.+.+
T Consensus 130 ~~g~gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 130 HDPQSVQQLVDYLASLTKQ 148 (158)
T ss_pred CCccCHHHHHHHHHHhchh
Confidence 9999999999999887754
No 158
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.36 E-value=7.1e-12 Score=81.32 Aligned_cols=86 Identities=26% Similarity=0.212 Sum_probs=58.0
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEEeeec
Q 044598 8 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 87 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 87 (110)
.+.+||++++|+|++++........+ ..++......++|+++|+||+|+.+.. .+..... ...+++.+||
T Consensus 265 ~~~~ADlil~VvD~s~~~~~~~~~~~-~~~L~~l~~~~~piIlV~NK~Dl~~~~---~v~~~~~------~~~~~i~iSA 334 (351)
T TIGR03156 265 EVREADLLLHVVDASDPDREEQIEAV-EKVLEELGAEDIPQLLVYNKIDLLDEP---RIERLEE------GYPEAVFVSA 334 (351)
T ss_pred HHHhCCEEEEEEECCCCchHHHHHHH-HHHHHHhccCCCCEEEEEEeecCCChH---hHHHHHh------CCCCEEEEEc
Confidence 47899999999999987655443322 222222222468999999999986432 2211111 1124789999
Q ss_pred ccCCCHHHHHHHHHHH
Q 044598 88 TSGEGLYEGLDWLSNN 103 (110)
Q Consensus 88 ~~~~~i~~l~~~l~~~ 103 (110)
++|.|+++++++|.+.
T Consensus 335 ktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 335 KTGEGLDLLLEAIAER 350 (351)
T ss_pred cCCCCHHHHHHHHHhh
Confidence 9999999999998764
No 159
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.36 E-value=4.7e-12 Score=84.06 Aligned_cols=94 Identities=18% Similarity=0.162 Sum_probs=60.8
Q ss_pred HhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCC-CCCHHHHHhhhCCCcccCcceEEEee
Q 044598 7 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN-AMNAAEITDKLGLHSLRQRHWYIQST 85 (110)
Q Consensus 7 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (110)
.+++.||++++|+|+++..+..+. ..+.... . .++|+++|+||+|+.+ ....+++...+......-...+++++
T Consensus 250 ~~~~~ad~~ilV~D~~~~~~~~~~-~~~~~~~-~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~ 324 (429)
T TIGR03594 250 KAIERADVVLLVLDATEGITEQDL-RIAGLIL-E---AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFI 324 (429)
T ss_pred HHHHhCCEEEEEEECCCCccHHHH-HHHHHHH-H---cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEE
Confidence 468899999999999875443322 2222222 2 4689999999999962 11122222222110011134589999
Q ss_pred ecccCCCHHHHHHHHHHHHH
Q 044598 86 CATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 86 Sa~~~~~i~~l~~~l~~~~~ 105 (110)
||++|.|++++++++.+...
T Consensus 325 SA~~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 325 SALTGQGVDKLLDAIDEVYE 344 (429)
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999887654
No 160
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.35 E-value=6.2e-12 Score=72.54 Aligned_cols=88 Identities=17% Similarity=0.210 Sum_probs=58.0
Q ss_pred HHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEEe
Q 044598 5 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQS 84 (110)
Q Consensus 5 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (110)
+..+++++|++++|+|+.+..+... .++...+.. .+.|+++|+||+|+.+.... ......+ ...++++
T Consensus 70 ~~~~~~~~d~ii~v~d~~~~~~~~~--~~~~~~~~~---~~~piiiv~nK~D~~~~~~~--~~~~~~~-----~~~~~~~ 137 (157)
T cd01894 70 AELAIEEADVILFVVDGREGLTPAD--EEIAKYLRK---SKKPVILVVNKVDNIKEEDE--AAEFYSL-----GFGEPIP 137 (157)
T ss_pred HHHHHHhCCEEEEEEeccccCCccH--HHHHHHHHh---cCCCEEEEEECcccCChHHH--HHHHHhc-----CCCCeEE
Confidence 3457889999999999876432222 223333322 35899999999998654321 1111111 0115679
Q ss_pred eecccCCCHHHHHHHHHHHH
Q 044598 85 TCATSGEGLYEGLDWLSNNI 104 (110)
Q Consensus 85 ~Sa~~~~~i~~l~~~l~~~~ 104 (110)
+||+++.|++++++++.+++
T Consensus 138 ~Sa~~~~gv~~l~~~l~~~~ 157 (157)
T cd01894 138 ISAEHGRGIGDLLDAILELL 157 (157)
T ss_pred EecccCCCHHHHHHHHHhhC
Confidence 99999999999999998753
No 161
>PRK15494 era GTPase Era; Provisional
Probab=99.34 E-value=8.6e-12 Score=80.68 Aligned_cols=90 Identities=14% Similarity=0.202 Sum_probs=59.9
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEEeeec
Q 044598 8 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 87 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 87 (110)
++++||++++|+|+.+. +.....++...+.. .+.|.++|+||+|+.+. ...++.+.+.. ......++++||
T Consensus 128 ~l~~aDvil~VvD~~~s--~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~-~~~~~~~~l~~---~~~~~~i~~iSA 198 (339)
T PRK15494 128 SLHSADLVLLIIDSLKS--FDDITHNILDKLRS---LNIVPIFLLNKIDIESK-YLNDIKAFLTE---NHPDSLLFPISA 198 (339)
T ss_pred HhhhCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc-cHHHHHHHHHh---cCCCcEEEEEec
Confidence 47899999999998652 33333333333322 24677889999998643 23333333211 112357899999
Q ss_pred ccCCCHHHHHHHHHHHHHh
Q 044598 88 TSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 88 ~~~~~i~~l~~~l~~~~~~ 106 (110)
++|.|++++++++.+.+..
T Consensus 199 ktg~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 199 LSGKNIDGLLEYITSKAKI 217 (339)
T ss_pred cCccCHHHHHHHHHHhCCC
Confidence 9999999999999988754
No 162
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.31 E-value=2.1e-11 Score=73.73 Aligned_cols=59 Identities=22% Similarity=0.293 Sum_probs=48.9
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCC------------------CCCCCeEEEEeeCCCCCC
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNED------------------ELRDAVLLVFANKQDLPN 59 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~iiv~nK~Dl~~ 59 (110)
|+.++..||+++|++|+|+|.+++.+++.+..|+..+.... ...+.|+++|+||+|+.+
T Consensus 67 ~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~ 143 (202)
T cd04102 67 VKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP 143 (202)
T ss_pred HHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchh
Confidence 45688999999999999999999999999988888875421 113689999999999854
No 163
>PRK11058 GTPase HflX; Provisional
Probab=99.30 E-value=8e-11 Score=78.15 Aligned_cols=91 Identities=18% Similarity=0.211 Sum_probs=59.0
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEEeeec
Q 044598 8 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 87 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 87 (110)
.+++||++|+|+|++++........ +..++......++|+++|+||+|+.+... ...... . ...+ .++.+||
T Consensus 273 ~~~~ADlIL~VvDaS~~~~~e~l~~-v~~iL~el~~~~~pvIiV~NKiDL~~~~~-~~~~~~-~----~~~~-~~v~ISA 344 (426)
T PRK11058 273 ETRQATLLLHVVDAADVRVQENIEA-VNTVLEEIDAHEIPTLLVMNKIDMLDDFE-PRIDRD-E----ENKP-IRVWLSA 344 (426)
T ss_pred HhhcCCEEEEEEeCCCccHHHHHHH-HHHHHHHhccCCCCEEEEEEcccCCCchh-HHHHHH-h----cCCC-ceEEEeC
Confidence 4689999999999998765544321 12222221224689999999999864321 111111 0 0111 2468999
Q ss_pred ccCCCHHHHHHHHHHHHHh
Q 044598 88 TSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 88 ~~~~~i~~l~~~l~~~~~~ 106 (110)
++|.|++++++++.+.+..
T Consensus 345 ktG~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 345 QTGAGIPLLFQALTERLSG 363 (426)
T ss_pred CCCCCHHHHHHHHHHHhhh
Confidence 9999999999999988754
No 164
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.30 E-value=4.6e-11 Score=82.20 Aligned_cols=95 Identities=23% Similarity=0.247 Sum_probs=64.8
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCH---HHHHhhhCCCcccCc
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA---AEITDKLGLHSLRQR 78 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~ 78 (110)
...|..+++.||++|+|+|+++.........+ ..... .+.|+++|+||+|+.+.... +++...++. .
T Consensus 88 ~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~-~~~~~----~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~-----~ 157 (600)
T PRK05433 88 SYEVSRSLAACEGALLVVDASQGVEAQTLANV-YLALE----NDLEIIPVLNKIDLPAADPERVKQEIEDVIGI-----D 157 (600)
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHH-HHHHH----CCCCEEEEEECCCCCcccHHHHHHHHHHHhCC-----C
Confidence 45678899999999999999874333322222 22221 36899999999998654321 222222222 1
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
...++++||++|.|++++++++.+.++.
T Consensus 158 ~~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 158 ASDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred cceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 2358899999999999999999987754
No 165
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.30 E-value=5.3e-11 Score=68.29 Aligned_cols=95 Identities=25% Similarity=0.226 Sum_probs=63.4
Q ss_pred hHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEE
Q 044598 4 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQ 83 (110)
Q Consensus 4 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (110)
.+..+++.+|++++|+|+.+........ +..... ..+.|+++|+||+|+.......................+++
T Consensus 68 ~~~~~~~~~d~il~v~~~~~~~~~~~~~-~~~~~~----~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (163)
T cd00880 68 LARRVLERADLILFVVDADLRADEEEEK-LLELLR----ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVI 142 (163)
T ss_pred HHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHH----hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceE
Confidence 4456889999999999998765443322 222221 15789999999999865433222211011111234556899
Q ss_pred eeecccCCCHHHHHHHHHHH
Q 044598 84 STCATSGEGLYEGLDWLSNN 103 (110)
Q Consensus 84 ~~Sa~~~~~i~~l~~~l~~~ 103 (110)
++||+++.|+.++++++.+.
T Consensus 143 ~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 143 AVSALTGEGIDELREALIEA 162 (163)
T ss_pred EEeeeccCCHHHHHHHHHhh
Confidence 99999999999999999875
No 166
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.29 E-value=2.3e-11 Score=81.26 Aligned_cols=82 Identities=18% Similarity=0.252 Sum_probs=60.0
Q ss_pred HhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEEeee
Q 044598 7 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTC 86 (110)
Q Consensus 7 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 86 (110)
.+++++|++++|+|++++.+..+.. .+.. ..++|+++|+||+|+.+..... .....+++++|
T Consensus 290 ~~~~~aD~il~VvD~s~~~s~~~~~-~l~~------~~~~piiiV~NK~DL~~~~~~~-----------~~~~~~~i~iS 351 (449)
T PRK05291 290 EAIEEADLVLLVLDASEPLTEEDDE-ILEE------LKDKPVIVVLNKADLTGEIDLE-----------EENGKPVIRIS 351 (449)
T ss_pred HHHHhCCEEEEEecCCCCCChhHHH-HHHh------cCCCCcEEEEEhhhccccchhh-----------hccCCceEEEE
Confidence 4788999999999998775554332 2222 2568999999999986432211 01223678999
Q ss_pred cccCCCHHHHHHHHHHHHHh
Q 044598 87 ATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 87 a~~~~~i~~l~~~l~~~~~~ 106 (110)
|++|.|++++++++.+.+..
T Consensus 352 Aktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 352 AKTGEGIDELREAIKELAFG 371 (449)
T ss_pred eeCCCCHHHHHHHHHHHHhh
Confidence 99999999999999988753
No 167
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.28 E-value=7e-11 Score=69.02 Aligned_cols=92 Identities=15% Similarity=0.124 Sum_probs=58.5
Q ss_pred HhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCcceEEEe
Q 044598 7 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQS 84 (110)
Q Consensus 7 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 84 (110)
.++.++|++++|+|+.++.+.... ..+.. ... .+.|+++++||+|+.+.. ..+.....+..........++++
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~-~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDL-RIAGL-ILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVF 154 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHH-HHHHH-HHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEE
Confidence 356799999999999876443322 22222 211 368999999999986552 22222222211000112357899
Q ss_pred eecccCCCHHHHHHHHHHH
Q 044598 85 TCATSGEGLYEGLDWLSNN 103 (110)
Q Consensus 85 ~Sa~~~~~i~~l~~~l~~~ 103 (110)
+||+++.|++++++++.+.
T Consensus 155 ~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 155 ISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred EeccCCCCHHHHHHHHHHh
Confidence 9999999999999988753
No 168
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.28 E-value=3.3e-11 Score=71.89 Aligned_cols=100 Identities=11% Similarity=0.160 Sum_probs=68.6
Q ss_pred hHHHhcccCCEEEEEEECCChhhHHHHH-HHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCH-HHHHhhhCCCcc------
Q 044598 4 LWRHYFQNTQGLIFVVDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSL------ 75 (110)
Q Consensus 4 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~-~~~~~~~~~~~~------ 75 (110)
++.-.|.++|++|+|++..++.+++... .|+-++ .+.. ++.|+++|++|.||.+.... +.+.. .+....
T Consensus 69 lRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi-~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~-~~~~~Vt~~~g~ 145 (198)
T KOG0393|consen 69 LRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEI-KHHC-PNVPIILVGTKADLRDDPSTLEKLQR-QGLEPVTYEQGL 145 (198)
T ss_pred ccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHH-HhhC-CCCCEEEEeehHHhhhCHHHHHHHHh-ccCCcccHHHHH
Confidence 4555789999999999999999998865 455554 3433 78999999999999743211 11110 000000
Q ss_pred ---cCc-ceEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 76 ---RQR-HWYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 76 ---~~~-~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
... ...+++|||+++.|+.++|+........
T Consensus 146 ~lA~~iga~~y~EcSa~tq~~v~~vF~~a~~~~l~ 180 (198)
T KOG0393|consen 146 ELAKEIGAVKYLECSALTQKGVKEVFDEAIRAALR 180 (198)
T ss_pred HHHHHhCcceeeeehhhhhCCcHHHHHHHHHHHhc
Confidence 011 2478999999999999999987776643
No 169
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.28 E-value=3.1e-11 Score=72.46 Aligned_cols=90 Identities=20% Similarity=0.228 Sum_probs=56.2
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCH---HHHHhhh---CCCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA---AEITDKL---GLHS 74 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~---~~~~~~~---~~~~ 74 (110)
|+.++..+++++|++++|+|+++.. ......++..... .+.|+++|+||+|+...... +++...+ +..
T Consensus 78 ~~~~~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~- 151 (194)
T cd01891 78 FGGEVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGAT- 151 (194)
T ss_pred HHHHHHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCc-
Confidence 3567888999999999999998632 2222233333221 36899999999999654321 1222221 110
Q ss_pred ccCcceEEEeeecccCCCHHHH
Q 044598 75 LRQRHWYIQSTCATSGEGLYEG 96 (110)
Q Consensus 75 ~~~~~~~~~~~Sa~~~~~i~~l 96 (110)
....+++++++||++|.|+.+.
T Consensus 152 ~~~~~~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 152 EEQLDFPVLYASAKNGWASLNL 173 (194)
T ss_pred cccCccCEEEeehhcccccccc
Confidence 1123568899999999887433
No 170
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.26 E-value=9e-11 Score=67.61 Aligned_cols=81 Identities=22% Similarity=0.135 Sum_probs=58.6
Q ss_pred HhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEEeee
Q 044598 7 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTC 86 (110)
Q Consensus 7 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 86 (110)
.++.++|++++|+|++++.+......+. . ..++|+++|+||+|+.+.... . ......+++++|
T Consensus 76 ~~~~~~~~~v~v~d~~~~~~~~~~~~~~-~------~~~~~vi~v~nK~D~~~~~~~------~----~~~~~~~~~~~S 138 (157)
T cd04164 76 EAIEEADLVLFVIDASRGLDEEDLEILE-L------PADKPIIVVLNKSDLLPDSEL------L----SLLAGKPIIAIS 138 (157)
T ss_pred HHHhhCCEEEEEEECCCCCCHHHHHHHH-h------hcCCCEEEEEEchhcCCcccc------c----cccCCCceEEEE
Confidence 4677999999999999755544332211 1 257999999999998654321 0 122345788999
Q ss_pred cccCCCHHHHHHHHHHHH
Q 044598 87 ATSGEGLYEGLDWLSNNI 104 (110)
Q Consensus 87 a~~~~~i~~l~~~l~~~~ 104 (110)
|+++.|+++++++|.+.+
T Consensus 139 a~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 139 AKTGEGLDELKEALLELA 156 (157)
T ss_pred CCCCCCHHHHHHHHHHhh
Confidence 999999999999998764
No 171
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.25 E-value=5.9e-11 Score=77.99 Aligned_cols=97 Identities=21% Similarity=0.120 Sum_probs=62.4
Q ss_pred hcccCCEEEEEEECC---ChhhHHHHHHHHHHHhcC-CCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEE
Q 044598 8 YFQNTQGLIFVVDSN---DRDRVVEARDELHRMLNE-DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQ 83 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (110)
++++++++++|+|++ ..+...+...++..+... ..+.++|.++|+||+|+.......+....+. .......+++
T Consensus 234 ~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~--~~~~~~~~Vi 311 (390)
T PRK12298 234 HLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIV--EALGWEGPVY 311 (390)
T ss_pred HHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHH--HHhCCCCCEE
Confidence 588999999999987 333444444444443322 1234689999999999864322211111110 0011112578
Q ss_pred eeecccCCCHHHHHHHHHHHHHh
Q 044598 84 STCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 84 ~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
.+||+++.|++++++++.+.+..
T Consensus 312 ~ISA~tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 312 LISAASGLGVKELCWDLMTFIEE 334 (390)
T ss_pred EEECCCCcCHHHHHHHHHHHhhh
Confidence 99999999999999999998864
No 172
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.25 E-value=9.1e-11 Score=82.26 Aligned_cols=95 Identities=11% Similarity=0.063 Sum_probs=62.3
Q ss_pred HhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEEeee
Q 044598 7 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTC 86 (110)
Q Consensus 7 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 86 (110)
.++++||++++|+|+++..+..+.. ++..+.. .++|+++|+||+|+.+....+.+...+..........+++.+|
T Consensus 528 ~~i~~advvilViDat~~~s~~~~~-i~~~~~~----~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iS 602 (712)
T PRK09518 528 AAIERSELALFLFDASQPISEQDLK-VMSMAVD----AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLS 602 (712)
T ss_pred HHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEE
Confidence 3478999999999998765544332 2333221 4689999999999965332222222211100011234678899
Q ss_pred cccCCCHHHHHHHHHHHHHh
Q 044598 87 ATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 87 a~~~~~i~~l~~~l~~~~~~ 106 (110)
|++|.|++++++.+.+...+
T Consensus 603 Aktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 603 AKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999887754
No 173
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.25 E-value=6.3e-11 Score=68.96 Aligned_cols=92 Identities=15% Similarity=0.103 Sum_probs=58.2
Q ss_pred HHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEEe
Q 044598 5 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQS 84 (110)
Q Consensus 5 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (110)
|. .++++|++++|+|+.++... ....+.+.+... ..++|+++|+||+|+.+..........+.. .....++.
T Consensus 3 ~~-~l~~aD~il~VvD~~~p~~~--~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~----~~~~~~~~ 74 (157)
T cd01858 3 YK-VIDSSDVVIQVLDARDPMGT--RCKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVTARWVKILSK----EYPTIAFH 74 (157)
T ss_pred hH-hhhhCCEEEEEEECCCCccc--cCHHHHHHHHhc-cCCCCEEEEEEchhcCCHHHHHHHHHHHhc----CCcEEEEE
Confidence 44 58899999999999875321 112333333321 135899999999999543211122222211 11223578
Q ss_pred eecccCCCHHHHHHHHHHHH
Q 044598 85 TCATSGEGLYEGLDWLSNNI 104 (110)
Q Consensus 85 ~Sa~~~~~i~~l~~~l~~~~ 104 (110)
+||+++.|++++++.+.+..
T Consensus 75 iSa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 75 ASINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred eeccccccHHHHHHHHHHHH
Confidence 99999999999999997764
No 174
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.24 E-value=4.1e-11 Score=79.80 Aligned_cols=94 Identities=16% Similarity=0.164 Sum_probs=60.6
Q ss_pred HhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEEeee
Q 044598 7 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTC 86 (110)
Q Consensus 7 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 86 (110)
.+++.+|++|+|+|+++..+..+. . +...... .++|+++++||+|+.+.....++...+..........+++++|
T Consensus 251 ~~~~~ad~~ilViD~~~~~~~~~~-~-i~~~~~~---~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~S 325 (435)
T PRK00093 251 KAIERADVVLLVIDATEGITEQDL-R-IAGLALE---AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFIS 325 (435)
T ss_pred HHHHHCCEEEEEEeCCCCCCHHHH-H-HHHHHHH---cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEe
Confidence 467899999999999875443322 2 2222222 4689999999999863322222222221100112345899999
Q ss_pred cccCCCHHHHHHHHHHHHH
Q 044598 87 ATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 87 a~~~~~i~~l~~~l~~~~~ 105 (110)
|++|.|+++++..+.+...
T Consensus 326 A~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 326 ALTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999998876553
No 175
>PRK12289 GTPase RsgA; Reviewed
Probab=99.24 E-value=5e-11 Score=77.30 Aligned_cols=91 Identities=21% Similarity=0.202 Sum_probs=60.8
Q ss_pred hHHHhcccCCEEEEEEECCChh-hHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEE
Q 044598 4 LWRHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYI 82 (110)
Q Consensus 4 ~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (110)
+.+..+.++|.+++|+|+.++. ....+..++... ...++|+++|+||+|+.+..........+ ...++++
T Consensus 82 L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a----~~~~ip~ILVlNK~DLv~~~~~~~~~~~~-----~~~g~~v 152 (352)
T PRK12289 82 LDRPPVANADQILLVFALAEPPLDPWQLSRFLVKA----ESTGLEIVLCLNKADLVSPTEQQQWQDRL-----QQWGYQP 152 (352)
T ss_pred eechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHH----HHCCCCEEEEEEchhcCChHHHHHHHHHH-----HhcCCeE
Confidence 3455688999999999998754 232334444433 12578999999999996432112222221 1234578
Q ss_pred EeeecccCCCHHHHHHHHHHH
Q 044598 83 QSTCATSGEGLYEGLDWLSNN 103 (110)
Q Consensus 83 ~~~Sa~~~~~i~~l~~~l~~~ 103 (110)
+.+||+++.|++++++.+...
T Consensus 153 ~~iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 153 LFISVETGIGLEALLEQLRNK 173 (352)
T ss_pred EEEEcCCCCCHHHHhhhhccc
Confidence 899999999999999888654
No 176
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.23 E-value=8.2e-11 Score=70.51 Aligned_cols=92 Identities=25% Similarity=0.151 Sum_probs=56.8
Q ss_pred cccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCH----HHHHhhhC--CCcccCcceEE
Q 044598 9 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AEITDKLG--LHSLRQRHWYI 82 (110)
Q Consensus 9 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~----~~~~~~~~--~~~~~~~~~~~ 82 (110)
...+|++++|+|+++.........+. +... .+.|+++++||+|+...... +++...++ +.......+++
T Consensus 89 ~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v 163 (192)
T cd01889 89 AQIIDLMLLVVDATKGIQTQTAECLV--IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFKNSPI 163 (192)
T ss_pred HhhCCEEEEEEECCCCccHHHHHHHH--HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcCCCCE
Confidence 34578999999998643222221111 1111 35799999999998643211 11222111 00011235689
Q ss_pred EeeecccCCCHHHHHHHHHHHHH
Q 044598 83 QSTCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 83 ~~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
+++||++|.|+++++.++.+.+.
T Consensus 164 i~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 164 IPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred EEEeccCCCCHHHHHHHHHhccc
Confidence 99999999999999999988764
No 177
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.23 E-value=6.8e-11 Score=70.67 Aligned_cols=96 Identities=24% Similarity=0.214 Sum_probs=60.0
Q ss_pred HHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCC---HHHHHhhh-CCCcccC-cc
Q 044598 5 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKL-GLHSLRQ-RH 79 (110)
Q Consensus 5 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~---~~~~~~~~-~~~~~~~-~~ 79 (110)
....++.+|++|+|+|+.+..... ....+..+. . .+.|+++++||+|+....- .+++...+ ....... ..
T Consensus 87 ~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~-~---~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 161 (188)
T PF00009_consen 87 MIRGLRQADIAILVVDANDGIQPQ-TEEHLKILR-E---LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENGEEI 161 (188)
T ss_dssp HHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHH-H---TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTTTST
T ss_pred ccceecccccceeeeecccccccc-ccccccccc-c---cccceEEeeeeccchhhhHHHHHHHHHHHhccccccCcccc
Confidence 344578999999999998543221 222233222 1 4788999999999862211 11122111 0001112 35
Q ss_pred eEEEeeecccCCCHHHHHHHHHHHHH
Q 044598 80 WYIQSTCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 80 ~~~~~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
.+++++||.+|.|++++++.+.+.++
T Consensus 162 ~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 162 VPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp EEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred ceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 79999999999999999999998875
No 178
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.22 E-value=6.8e-11 Score=82.88 Aligned_cols=91 Identities=18% Similarity=0.161 Sum_probs=60.3
Q ss_pred hHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEE
Q 044598 4 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQ 83 (110)
Q Consensus 4 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (110)
....+++.||++|+|+|+++. +......+...+.. .++|+++|+||+|+..... .......+ ... ..+
T Consensus 347 ~~~~~~~~aD~iL~VvDa~~~--~~~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~~--~~~~~~~l----g~~-~~~ 414 (712)
T PRK09518 347 QAQIAVSLADAVVFVVDGQVG--LTSTDERIVRMLRR---AGKPVVLAVNKIDDQASEY--DAAEFWKL----GLG-EPY 414 (712)
T ss_pred HHHHHHHhCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEECcccccchh--hHHHHHHc----CCC-CeE
Confidence 445678999999999999753 22222333333332 4799999999999854321 11221111 111 245
Q ss_pred eeecccCCCHHHHHHHHHHHHHh
Q 044598 84 STCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 84 ~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
++||++|.|++++++++.+.+..
T Consensus 415 ~iSA~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 415 PISAMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred EEECCCCCCchHHHHHHHHhccc
Confidence 89999999999999999987754
No 179
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.21 E-value=3.9e-10 Score=73.12 Aligned_cols=106 Identities=25% Similarity=0.385 Sum_probs=77.3
Q ss_pred CcchHHHhcccCCEEEEEEECCCh----------hhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC----------
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDR----------DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA---------- 60 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~---------- 60 (110)
+|+.|.+|+++++++|||+|+++. ..+.++...+..++....+.+.|+++++||.|+...
T Consensus 197 ~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~~~~Kl~~~~l~~~ 276 (342)
T smart00275 197 ERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDLFEEKIKKVPLVDY 276 (342)
T ss_pred hhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHhHHHHhCCCchhcc
Confidence 478999999999999999999863 357777788888888777788999999999997311
Q ss_pred -------CCHHH----HHhhh-CCCcc-cCcceEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 61 -------MNAAE----ITDKL-GLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 61 -------~~~~~----~~~~~-~~~~~-~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
.+.+. +...+ ..... .++.+.++.++|.+..++..+|+.+.+.+..
T Consensus 277 fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~ 335 (342)
T smart00275 277 FPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQ 335 (342)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHH
Confidence 01111 11222 11111 2345677889999999999999988887764
No 180
>PRK00089 era GTPase Era; Reviewed
Probab=99.21 E-value=8.4e-11 Score=74.65 Aligned_cols=93 Identities=17% Similarity=0.246 Sum_probs=61.1
Q ss_pred HHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC-CHHHHHhhhCCCcccCcceEEEe
Q 044598 6 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQS 84 (110)
Q Consensus 6 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 84 (110)
...+.++|++++|+|+++. +.....++...+.. .+.|+++|+||+|+.... ........+.. .....++++
T Consensus 79 ~~~~~~~D~il~vvd~~~~--~~~~~~~i~~~l~~---~~~pvilVlNKiDl~~~~~~l~~~~~~l~~---~~~~~~i~~ 150 (292)
T PRK00089 79 WSSLKDVDLVLFVVDADEK--IGPGDEFILEKLKK---VKTPVILVLNKIDLVKDKEELLPLLEELSE---LMDFAEIVP 150 (292)
T ss_pred HHHHhcCCEEEEEEeCCCC--CChhHHHHHHHHhh---cCCCEEEEEECCcCCCCHHHHHHHHHHHHh---hCCCCeEEE
Confidence 4467899999999999872 22222333333332 368999999999996321 11112222110 112357889
Q ss_pred eecccCCCHHHHHHHHHHHHHh
Q 044598 85 TCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 85 ~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
+||+++.|++++++++.+.+..
T Consensus 151 iSA~~~~gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 151 ISALKGDNVDELLDVIAKYLPE 172 (292)
T ss_pred ecCCCCCCHHHHHHHHHHhCCC
Confidence 9999999999999999988753
No 181
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.21 E-value=2.8e-10 Score=75.97 Aligned_cols=86 Identities=13% Similarity=0.096 Sum_probs=60.0
Q ss_pred HHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEEee
Q 044598 6 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQST 85 (110)
Q Consensus 6 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (110)
..+++++|++++|+|++++.+.... |+.... . .++|+++|+||+|+.+. ..+.+.. ....+++.+
T Consensus 277 ~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~-~---~~~piIlV~NK~Dl~~~-~~~~~~~--------~~~~~~~~v 341 (442)
T TIGR00450 277 FKAIKQADLVIYVLDASQPLTKDDF--LIIDLN-K---SKKPFILVLNKIDLKIN-SLEFFVS--------SKVLNSSNL 341 (442)
T ss_pred HHHHhhCCEEEEEEECCCCCChhHH--HHHHHh-h---CCCCEEEEEECccCCCc-chhhhhh--------hcCCceEEE
Confidence 4678999999999999876655443 444432 1 36899999999998643 1111111 112356789
Q ss_pred ecccCCCHHHHHHHHHHHHHhh
Q 044598 86 CATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 86 Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
||++ .|++++++.+.+.+...
T Consensus 342 Sak~-~gI~~~~~~L~~~i~~~ 362 (442)
T TIGR00450 342 SAKQ-LKIKALVDLLTQKINAF 362 (442)
T ss_pred EEec-CCHHHHHHHHHHHHHHH
Confidence 9998 69999999888877654
No 182
>PLN00023 GTP-binding protein; Provisional
Probab=99.20 E-value=8e-11 Score=75.28 Aligned_cols=59 Identities=17% Similarity=0.245 Sum_probs=49.2
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCC-----------CCCCeEEEEeeCCCCCC
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDE-----------LRDAVLLVFANKQDLPN 59 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~iiv~nK~Dl~~ 59 (110)
|+.+|..|+++++++|+|+|.++..++..+..|+..+..... ..+.|++||+||+|+..
T Consensus 96 frsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~ 165 (334)
T PLN00023 96 YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP 165 (334)
T ss_pred hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence 567899999999999999999999999988888887764321 12589999999999954
No 183
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.19 E-value=7.7e-11 Score=71.34 Aligned_cols=101 Identities=25% Similarity=0.343 Sum_probs=67.7
Q ss_pred cchHHHhcccC-CEEEEEEECCCh-hhHHHHHHHHHHHhcCCC--CCCCeEEEEeeCCCCCCCCCHHHHHhhh-------
Q 044598 2 RPLWRHYFQNT-QGLIFVVDSNDR-DRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNAMNAAEITDKL------- 70 (110)
Q Consensus 2 ~~~~~~~~~~~-~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~iiv~nK~Dl~~~~~~~~~~~~~------- 70 (110)
+.++..+++++ +++|||+|+++. .++.....++..++.... ..+.|+++++||+|+..+.+.+.+...+
T Consensus 62 ~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~ 141 (203)
T cd04105 62 RDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTL 141 (203)
T ss_pred HHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHH
Confidence 56778899999 999999999886 556666666666544321 1479999999999986554322211110
Q ss_pred ------CCCc--------------------c--cCcceEEEeeecccCC-CHHHHHHHHHH
Q 044598 71 ------GLHS--------------------L--RQRHWYIQSTCATSGE-GLYEGLDWLSN 102 (110)
Q Consensus 71 ------~~~~--------------------~--~~~~~~~~~~Sa~~~~-~i~~l~~~l~~ 102 (110)
.+.. + ....+.++++|++.+. |++.+.+|+.+
T Consensus 142 ~~~r~~~l~~~~~~~~~~~~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 142 RESRSKSLSSLDGDEGSKESLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred HHHHhccccccccccccccccccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 0000 0 0134678899998776 69999999865
No 184
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.19 E-value=6.1e-11 Score=69.48 Aligned_cols=98 Identities=14% Similarity=0.253 Sum_probs=74.1
Q ss_pred chHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCcce
Q 044598 3 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHW 80 (110)
Q Consensus 3 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~ 80 (110)
.+...||++|.+.++|+..++..+|+....|..++..+. ..+|.++|-||+|+.+.. ...++.... .....
T Consensus 84 aItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~--~~IPtV~vqNKIDlveds~~~~~evE~la-----k~l~~ 156 (246)
T KOG4252|consen 84 AITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKET--ERIPTVFVQNKIDLVEDSQMDKGEVEGLA-----KKLHK 156 (246)
T ss_pred HHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHh--ccCCeEEeeccchhhHhhhcchHHHHHHH-----HHhhh
Confidence 456789999999999999999999999989988876542 579999999999996542 122221110 11223
Q ss_pred EEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 81 YIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 81 ~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
.++.+|++...|+.++|..|++.+..+
T Consensus 157 RlyRtSvked~NV~~vF~YLaeK~~q~ 183 (246)
T KOG4252|consen 157 RLYRTSVKEDFNVMHVFAYLAEKLTQQ 183 (246)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 456899999999999999998877654
No 185
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.19 E-value=8.2e-11 Score=68.26 Aligned_cols=81 Identities=25% Similarity=0.344 Sum_probs=55.5
Q ss_pred HHHhc--ccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC----CHHHHHhhhCCCcccCc
Q 044598 5 WRHYF--QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSLRQR 78 (110)
Q Consensus 5 ~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~ 78 (110)
+..|+ ++.|++++|+|++..+ ........+.+ .++|++++.||+|..... +.+.+.+.++
T Consensus 70 ~~~~l~~~~~D~ii~VvDa~~l~---r~l~l~~ql~e----~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg------- 135 (156)
T PF02421_consen 70 ARDYLLSEKPDLIIVVVDATNLE---RNLYLTLQLLE----LGIPVVVVLNKMDEAERKGIEIDAEKLSERLG------- 135 (156)
T ss_dssp HHHHHHHTSSSEEEEEEEGGGHH---HHHHHHHHHHH----TTSSEEEEEETHHHHHHTTEEE-HHHHHHHHT-------
T ss_pred HHHHHhhcCCCEEEEECCCCCHH---HHHHHHHHHHH----cCCCEEEEEeCHHHHHHcCCEECHHHHHHHhC-------
Confidence 44554 5899999999998643 22223333332 479999999999975432 2344444443
Q ss_pred ceEEEeeecccCCCHHHHHHHH
Q 044598 79 HWYIQSTCATSGEGLYEGLDWL 100 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l 100 (110)
++++++||++++|++++++.|
T Consensus 136 -~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 136 -VPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp -S-EEEEBTTTTBTHHHHHHHH
T ss_pred -CCEEEEEeCCCcCHHHHHhhC
Confidence 479999999999999998865
No 186
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.19 E-value=1.8e-10 Score=72.81 Aligned_cols=89 Identities=30% Similarity=0.392 Sum_probs=61.2
Q ss_pred hcccCCEEEEEEECCCh---hhHHHHHHHHHHHhc-CCCCCCCeEEEEeeCCCCCCCCCH--HHHHhhhCCCcccCcceE
Q 044598 8 YFQNTQGLIFVVDSNDR---DRVVEARDELHRMLN-EDELRDAVLLVFANKQDLPNAMNA--AEITDKLGLHSLRQRHWY 81 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~ 81 (110)
.+++|+.++||+|++.. +.++++..++.++-. +..+.++|.++|+||+|+++.... +++...+ ....
T Consensus 271 HiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~l-------q~~~ 343 (366)
T KOG1489|consen 271 HIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRL-------QNPH 343 (366)
T ss_pred HHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHc-------CCCc
Confidence 47899999999999877 556665544444322 234567999999999998533211 2222221 1115
Q ss_pred EEeeecccCCCHHHHHHHHHHH
Q 044598 82 IQSTCATSGEGLYEGLDWLSNN 103 (110)
Q Consensus 82 ~~~~Sa~~~~~i~~l~~~l~~~ 103 (110)
++++||++++|+.++++.|.+.
T Consensus 344 V~pvsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 344 VVPVSAKSGEGLEELLNGLREL 365 (366)
T ss_pred EEEeeeccccchHHHHHHHhhc
Confidence 8899999999999999887653
No 187
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.18 E-value=1.4e-10 Score=67.24 Aligned_cols=91 Identities=20% Similarity=0.199 Sum_probs=59.6
Q ss_pred HHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC-CHHHHHhhhCCCcccCcceEEE
Q 044598 5 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQ 83 (110)
Q Consensus 5 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~ 83 (110)
...++..+|++++|+|++++. .....++...+.. .+.|+++++||+|+.... ...+....+.. .....+++
T Consensus 76 ~~~~~~~~d~i~~v~d~~~~~--~~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~ 147 (168)
T cd04163 76 AWSALKDVDLVLFVVDASEPI--GEGDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKE---LGPFAEIF 147 (168)
T ss_pred HHHHHHhCCEEEEEEECCCcc--CchHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHh---ccCCCceE
Confidence 345688999999999998751 2222233333322 358999999999986322 12222222211 12234788
Q ss_pred eeecccCCCHHHHHHHHHHH
Q 044598 84 STCATSGEGLYEGLDWLSNN 103 (110)
Q Consensus 84 ~~Sa~~~~~i~~l~~~l~~~ 103 (110)
++|++++.|+++++++|.+.
T Consensus 148 ~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 148 PISALKGENVDELLEEIVKY 167 (168)
T ss_pred EEEeccCCChHHHHHHHHhh
Confidence 99999999999999999765
No 188
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.18 E-value=4.7e-10 Score=72.08 Aligned_cols=107 Identities=25% Similarity=0.402 Sum_probs=78.0
Q ss_pred CcchHHHhcccCCEEEEEEECCCh----------hhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC----------
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDR----------DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA---------- 60 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~---------- 60 (110)
.|+.|.+|++++++++||+|.++. ..+.++...+..+.......+.|+++++||.|+...
T Consensus 174 ~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D~f~~ki~~~~l~~~ 253 (317)
T cd00066 174 ERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKDLFEEKIKKSPLTDY 253 (317)
T ss_pred cchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChHHHHHhhcCCCcccc
Confidence 478999999999999999999863 457777788888887777778999999999996211
Q ss_pred --------CCHHHHH----hhh-CCCcccCcceEEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 61 --------MNAAEIT----DKL-GLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 61 --------~~~~~~~----~~~-~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
.+.+... ..+ ......++.+.++.++|.+..++..+|+.+.+.+...
T Consensus 254 fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~ 313 (317)
T cd00066 254 FPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQN 313 (317)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHH
Confidence 1111111 111 1111123566778899999999999999998887654
No 189
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.18 E-value=1.9e-10 Score=76.52 Aligned_cols=92 Identities=17% Similarity=0.171 Sum_probs=61.2
Q ss_pred chHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEE
Q 044598 3 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYI 82 (110)
Q Consensus 3 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (110)
.++..+++.+|++++|+|+.+..... ...+..++.. .++|+++|+||+|+.+.... ..+...+ ...++
T Consensus 70 ~~~~~~~~~ad~vl~vvD~~~~~~~~--d~~i~~~l~~---~~~piilVvNK~D~~~~~~~--~~~~~~l-----g~~~~ 137 (429)
T TIGR03594 70 EQAEIAIEEADVILFVVDGREGLTPE--DEEIAKWLRK---SGKPVILVANKIDGKKEDAV--AAEFYSL-----GFGEP 137 (429)
T ss_pred HHHHHHHhhCCEEEEEEeCCCCCCHH--HHHHHHHHHH---hCCCEEEEEECccCCccccc--HHHHHhc-----CCCCe
Confidence 34566789999999999997642222 2233333332 46899999999998643211 1111111 11157
Q ss_pred EeeecccCCCHHHHHHHHHHHHHh
Q 044598 83 QSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 83 ~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
+++||.+|.|++++++++.+.+..
T Consensus 138 ~~vSa~~g~gv~~ll~~i~~~l~~ 161 (429)
T TIGR03594 138 IPISAEHGRGIGDLLDAILELLPE 161 (429)
T ss_pred EEEeCCcCCChHHHHHHHHHhcCc
Confidence 899999999999999999887743
No 190
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.17 E-value=1.7e-10 Score=73.22 Aligned_cols=86 Identities=20% Similarity=0.139 Sum_probs=59.8
Q ss_pred hcccCCEEEEEEECCChh-hHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEEeee
Q 044598 8 YFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTC 86 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 86 (110)
.+.++|.+++|+|+.++. ++.....|+..+.. .++|+++|+||+|+.+... ....... ....+.+++.+|
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~~-~~~~~~~----~~~~g~~v~~vS 145 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDEE-EELELVE----ALALGYPVLAVS 145 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChHH-HHHHHHH----HHhCCCeEEEEE
Confidence 478999999999998776 55555555554321 4689999999999964321 1111110 112345888999
Q ss_pred cccCCCHHHHHHHHHH
Q 044598 87 ATSGEGLYEGLDWLSN 102 (110)
Q Consensus 87 a~~~~~i~~l~~~l~~ 102 (110)
|+++.|+++++..+..
T Consensus 146 A~~g~gi~~L~~~L~~ 161 (287)
T cd01854 146 AKTGEGLDELREYLKG 161 (287)
T ss_pred CCCCccHHHHHhhhcc
Confidence 9999999999888764
No 191
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.17 E-value=3.6e-10 Score=74.41 Aligned_cols=93 Identities=17% Similarity=0.207 Sum_probs=62.8
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC--CCHHHHHhhhCCCcccCcceEEEee
Q 044598 8 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQST 85 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (110)
.++.|+++++|+|++++ +.+.+..+..+..+ .+.++++|+||+|+.+. ...++....+......-...+++.+
T Consensus 257 aI~~a~vvllviDa~~~--~~~qD~~ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~i 331 (444)
T COG1160 257 AIERADVVLLVIDATEG--ISEQDLRIAGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFI 331 (444)
T ss_pred HHhhcCEEEEEEECCCC--chHHHHHHHHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEE
Confidence 46789999999999875 33333344444433 57899999999998664 2233333222211112234588999
Q ss_pred ecccCCCHHHHHHHHHHHHH
Q 044598 86 CATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 86 Sa~~~~~i~~l~~~l~~~~~ 105 (110)
||++|.|+.++++.+.....
T Consensus 332 SA~~~~~i~~l~~~i~~~~~ 351 (444)
T COG1160 332 SALTGQGLDKLFEAIKEIYE 351 (444)
T ss_pred EecCCCChHHHHHHHHHHHH
Confidence 99999999999998877654
No 192
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.16 E-value=6.2e-10 Score=67.77 Aligned_cols=105 Identities=24% Similarity=0.302 Sum_probs=68.6
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHH-HHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHH-HHhhh--------
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEA-RDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE-ITDKL-------- 70 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~-~~~~~-------- 70 (110)
|+.+|..|+.+++++++|+|.+...+..+. ..|...+... .....|+++++||+|+........ +...+
T Consensus 67 ~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 145 (219)
T COG1100 67 YRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELREL-APDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLV 145 (219)
T ss_pred HHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHh-CCCCceEEEEecccccccchhHHHHHHhhhhcCcchhh
Confidence 367899999999999999999885554444 4454444332 223689999999999976532111 11000
Q ss_pred --CCCccc-CcceEEEeeecc--cCCCHHHHHHHHHHHHHh
Q 044598 71 --GLHSLR-QRHWYIQSTCAT--SGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 71 --~~~~~~-~~~~~~~~~Sa~--~~~~i~~l~~~l~~~~~~ 106 (110)
...... .....++++|++ ++.++.+++..+...+..
T Consensus 146 ~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~~ 186 (219)
T COG1100 146 LAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKLLE 186 (219)
T ss_pred hHhHHhhhhhcccceeEeecccCCCcCHHHHHHHHHHHHHH
Confidence 000000 112237899999 999999999988887753
No 193
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.16 E-value=6e-10 Score=63.84 Aligned_cols=95 Identities=17% Similarity=0.202 Sum_probs=61.6
Q ss_pred cchHHHhcccCCEEEEEEECCCh-hhHHHHH-HHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcc
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDR-DRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRH 79 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 79 (110)
+++|..++++++.++.++|.... .++.... .+...+..... .+.|+++++||+|+............+.. ...
T Consensus 64 ~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~----~~~ 138 (161)
T TIGR00231 64 RAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDAKLKTHVAFLFAK----LNG 138 (161)
T ss_pred hHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcchhhHHHHHHHhh----ccC
Confidence 45778888999999999998654 3343333 23332222212 27899999999998654322222222211 122
Q ss_pred eEEEeeecccCCCHHHHHHHHH
Q 044598 80 WYIQSTCATSGEGLYEGLDWLS 101 (110)
Q Consensus 80 ~~~~~~Sa~~~~~i~~l~~~l~ 101 (110)
.+++++||+++.|+.+++++|.
T Consensus 139 ~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 139 EPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred CceEEeecCCCCCHHHHHHHhh
Confidence 3588999999999999999874
No 194
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.15 E-value=2.6e-10 Score=76.02 Aligned_cols=88 Identities=19% Similarity=0.234 Sum_probs=57.7
Q ss_pred hHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEE
Q 044598 4 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQ 83 (110)
Q Consensus 4 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (110)
.+..+++.+|++++|+|+.+..+.. ..++..++.. .++|+++|+||+|+.+.. ....+...+. ...++
T Consensus 73 ~~~~~~~~ad~il~vvd~~~~~~~~--~~~~~~~l~~---~~~piilv~NK~D~~~~~--~~~~~~~~lg-----~~~~~ 140 (435)
T PRK00093 73 QAELAIEEADVILFVVDGRAGLTPA--DEEIAKILRK---SNKPVILVVNKVDGPDEE--ADAYEFYSLG-----LGEPY 140 (435)
T ss_pred HHHHHHHhCCEEEEEEECCCCCCHH--HHHHHHHHHH---cCCcEEEEEECccCccch--hhHHHHHhcC-----CCCCE
Confidence 3556789999999999998643322 2223333332 368999999999975421 1222221110 01357
Q ss_pred eeecccCCCHHHHHHHHHHH
Q 044598 84 STCATSGEGLYEGLDWLSNN 103 (110)
Q Consensus 84 ~~Sa~~~~~i~~l~~~l~~~ 103 (110)
++||++|.|++++++++.+.
T Consensus 141 ~iSa~~g~gv~~l~~~I~~~ 160 (435)
T PRK00093 141 PISAEHGRGIGDLLDAILEE 160 (435)
T ss_pred EEEeeCCCCHHHHHHHHHhh
Confidence 89999999999999999873
No 195
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.14 E-value=4.4e-10 Score=78.66 Aligned_cols=98 Identities=14% Similarity=0.127 Sum_probs=63.7
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCC----Cccc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL----HSLR 76 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~----~~~~ 76 (110)
|..+|..+++.+|++|+|+|+++.... +....+..+ . ..+.|+++++||+|+.+.. .+.+...+.. ....
T Consensus 308 F~~mr~rg~~~aDiaILVVDA~dGv~~-QT~E~I~~~-k---~~~iPiIVViNKiDl~~~~-~e~v~~eL~~~~ll~e~~ 381 (742)
T CHL00189 308 FSSMRSRGANVTDIAILIIAADDGVKP-QTIEAINYI-Q---AANVPIIVAINKIDKANAN-TERIKQQLAKYNLIPEKW 381 (742)
T ss_pred HHHHHHHHHHHCCEEEEEEECcCCCCh-hhHHHHHHH-H---hcCceEEEEEECCCccccC-HHHHHHHHHHhccchHhh
Confidence 456788899999999999998763211 111222222 1 1468999999999986532 2233222211 0001
Q ss_pred CcceEEEeeecccCCCHHHHHHHHHHHH
Q 044598 77 QRHWYIQSTCATSGEGLYEGLDWLSNNI 104 (110)
Q Consensus 77 ~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 104 (110)
...++++++||++|.|++++++++....
T Consensus 382 g~~vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 382 GGDTPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred CCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence 1236899999999999999999987653
No 196
>PRK00098 GTPase RsgA; Reviewed
Probab=99.14 E-value=1.5e-10 Score=73.73 Aligned_cols=85 Identities=21% Similarity=0.221 Sum_probs=56.5
Q ss_pred cccCCEEEEEEECCChhhHHH-HHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCC-HHHHHhhhCCCcccCcceEEEeee
Q 044598 9 FQNTQGLIFVVDSNDRDRVVE-ARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTC 86 (110)
Q Consensus 9 ~~~~~~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S 86 (110)
.+++|++++|+|+.++..... ...++... .. .++|+++|+||+|+.+... ..+.... +...+.+++.+|
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~-~~---~~ip~iIVlNK~DL~~~~~~~~~~~~~-----~~~~g~~v~~vS 148 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLA-EA---NGIKPIIVLNKIDLLDDLEEARELLAL-----YRAIGYDVLELS 148 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHH-HH---CCCCEEEEEEhHHcCCCHHHHHHHHHH-----HHHCCCeEEEEe
Confidence 589999999999987654333 23444333 22 4789999999999953211 1111111 112345789999
Q ss_pred cccCCCHHHHHHHHHH
Q 044598 87 ATSGEGLYEGLDWLSN 102 (110)
Q Consensus 87 a~~~~~i~~l~~~l~~ 102 (110)
|+++.|++++++.+..
T Consensus 149 A~~g~gi~~L~~~l~g 164 (298)
T PRK00098 149 AKEGEGLDELKPLLAG 164 (298)
T ss_pred CCCCccHHHHHhhccC
Confidence 9999999999987753
No 197
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.13 E-value=5.6e-10 Score=63.94 Aligned_cols=98 Identities=18% Similarity=0.309 Sum_probs=69.9
Q ss_pred hHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCH-HHHHhhhCCCcccCcceEE
Q 044598 4 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRQRHWYI 82 (110)
Q Consensus 4 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~ 82 (110)
+=++|++-+|++++|++..++++|......-..+-+..+...+|+++.+||+|+.++... ...... +.....+..
T Consensus 77 Lprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~----Wa~rEkvkl 152 (198)
T KOG3883|consen 77 LPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQI----WAKREKVKL 152 (198)
T ss_pred hhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHH----HHhhhheeE
Confidence 347899999999999999999988655432233333444467999999999999654321 111211 233445678
Q ss_pred EeeecccCCCHHHHHHHHHHHHH
Q 044598 83 QSTCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 83 ~~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
.+++|.+...+.+.|..+...+.
T Consensus 153 ~eVta~dR~sL~epf~~l~~rl~ 175 (198)
T KOG3883|consen 153 WEVTAMDRPSLYEPFTYLASRLH 175 (198)
T ss_pred EEEEeccchhhhhHHHHHHHhcc
Confidence 89999999999999998887663
No 198
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.12 E-value=7.2e-10 Score=76.17 Aligned_cols=96 Identities=20% Similarity=0.230 Sum_probs=61.6
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhh---CCCc-cc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKL---GLHS-LR 76 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~---~~~~-~~ 76 (110)
|..++..++..+|++++|+|+++... .+....+... . ..+.|+++++||+|+.+.. .+.+...+ +... ..
T Consensus 148 F~~~r~rga~~aDiaILVVda~dgv~-~qT~e~i~~~-~---~~~vPiIVviNKiDl~~~~-~e~v~~~L~~~g~~~~~~ 221 (587)
T TIGR00487 148 FTSMRARGAKVTDIVVLVVAADDGVM-PQTIEAISHA-K---AANVPIIVAINKIDKPEAN-PDRVKQELSEYGLVPEDW 221 (587)
T ss_pred hhhHHHhhhccCCEEEEEEECCCCCC-HhHHHHHHHH-H---HcCCCEEEEEECcccccCC-HHHHHHHHHHhhhhHHhc
Confidence 45677888999999999999875321 1112222221 1 1468999999999986532 22332222 1100 00
Q ss_pred CcceEEEeeecccCCCHHHHHHHHHH
Q 044598 77 QRHWYIQSTCATSGEGLYEGLDWLSN 102 (110)
Q Consensus 77 ~~~~~~~~~Sa~~~~~i~~l~~~l~~ 102 (110)
....+++++||++|+|++++++++..
T Consensus 222 ~~~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 222 GGDTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred CCCceEEEEECCCCCChHHHHHhhhh
Confidence 12347899999999999999999864
No 199
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.11 E-value=6e-10 Score=73.76 Aligned_cols=97 Identities=15% Similarity=0.130 Sum_probs=59.2
Q ss_pred hHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCH----HHHHhhhCCCcccCcc
Q 044598 4 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AEITDKLGLHSLRQRH 79 (110)
Q Consensus 4 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~ 79 (110)
.+......+|++++|+|+++.....+....+..+ .. ...+|+++++||+|+.+.... +++...+. ......
T Consensus 96 ~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~--~gi~~iIVvvNK~Dl~~~~~~~~~~~~i~~~l~--~~~~~~ 170 (406)
T TIGR03680 96 TMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EI--IGIKNIVIVQNKIDLVSKEKALENYEEIKEFVK--GTVAEN 170 (406)
T ss_pred HHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HH--cCCCeEEEEEEccccCCHHHHHHHHHHHHhhhh--hcccCC
Confidence 3445566789999999998532111222222222 11 123579999999998653211 12222111 011235
Q ss_pred eEEEeeecccCCCHHHHHHHHHHHHH
Q 044598 80 WYIQSTCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 80 ~~~~~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
++++++||++|.|+++++++|...+.
T Consensus 171 ~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 171 APIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred CeEEEEECCCCCChHHHHHHHHHhCC
Confidence 68999999999999999999988654
No 200
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.10 E-value=1e-09 Score=77.34 Aligned_cols=97 Identities=21% Similarity=0.229 Sum_probs=62.4
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhh---CC-Cccc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKL---GL-HSLR 76 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~---~~-~~~~ 76 (110)
|..++..+++.+|++|+|+|+++... .+....+... ...+.|+++++||+|+.+.. .+.+...+ +. ....
T Consensus 350 F~~m~~rga~~aDiaILVVdAddGv~-~qT~e~i~~a----~~~~vPiIVviNKiDl~~a~-~e~V~~eL~~~~~~~e~~ 423 (787)
T PRK05306 350 FTAMRARGAQVTDIVVLVVAADDGVM-PQTIEAINHA----KAAGVPIIVAINKIDKPGAN-PDRVKQELSEYGLVPEEW 423 (787)
T ss_pred chhHHHhhhhhCCEEEEEEECCCCCC-HhHHHHHHHH----HhcCCcEEEEEECccccccC-HHHHHHHHHHhcccHHHh
Confidence 45678888999999999999976311 1111222221 12468999999999996532 22222211 11 0001
Q ss_pred CcceEEEeeecccCCCHHHHHHHHHHH
Q 044598 77 QRHWYIQSTCATSGEGLYEGLDWLSNN 103 (110)
Q Consensus 77 ~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 103 (110)
...++++++||++|.|++++++++...
T Consensus 424 g~~vp~vpvSAktG~GI~eLle~I~~~ 450 (787)
T PRK05306 424 GGDTIFVPVSAKTGEGIDELLEAILLQ 450 (787)
T ss_pred CCCceEEEEeCCCCCCchHHHHhhhhh
Confidence 123689999999999999999998753
No 201
>COG2262 HflX GTPases [General function prediction only]
Probab=99.10 E-value=2.1e-09 Score=70.03 Aligned_cols=89 Identities=20% Similarity=0.215 Sum_probs=60.2
Q ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEEeeeccc
Q 044598 10 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 89 (110)
Q Consensus 10 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 89 (110)
..||++++|+|+++|...... .-...++.+-...++|+++|+||+|+..... ....... ..+ ..+.+||++
T Consensus 270 ~~aDlllhVVDaSdp~~~~~~-~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~---~~~~~~~----~~~-~~v~iSA~~ 340 (411)
T COG2262 270 KEADLLLHVVDASDPEILEKL-EAVEDVLAEIGADEIPIILVLNKIDLLEDEE---ILAELER----GSP-NPVFISAKT 340 (411)
T ss_pred hcCCEEEEEeecCChhHHHHH-HHHHHHHHHcCCCCCCEEEEEecccccCchh---hhhhhhh----cCC-CeEEEEecc
Confidence 479999999999998544333 2233444443445699999999999754322 1111110 112 456899999
Q ss_pred CCCHHHHHHHHHHHHHhh
Q 044598 90 GEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 90 ~~~i~~l~~~l~~~~~~~ 107 (110)
|.|++.+.+.|.+.+...
T Consensus 341 ~~gl~~L~~~i~~~l~~~ 358 (411)
T COG2262 341 GEGLDLLRERIIELLSGL 358 (411)
T ss_pred CcCHHHHHHHHHHHhhhc
Confidence 999999999999988643
No 202
>COG1159 Era GTPase [General function prediction only]
Probab=99.09 E-value=7.2e-10 Score=69.57 Aligned_cols=93 Identities=15% Similarity=0.182 Sum_probs=63.9
Q ss_pred HHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCC-HHHHHhhhCCCcccCcceEEEe
Q 044598 6 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQS 84 (110)
Q Consensus 6 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 84 (110)
.+.+.++|+++||+|++++.. ..+.++...+.. .+.|++++.||+|...... ...+.+.... ......+++
T Consensus 80 ~~sl~dvDlilfvvd~~~~~~--~~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~---~~~f~~ivp 151 (298)
T COG1159 80 RSALKDVDLILFVVDADEGWG--PGDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKK---LLPFKEIVP 151 (298)
T ss_pred HHHhccCcEEEEEEeccccCC--ccHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHh---hCCcceEEE
Confidence 456889999999999986422 233444444433 3579999999999865543 1222222211 122337999
Q ss_pred eecccCCCHHHHHHHHHHHHHh
Q 044598 85 TCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 85 ~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
+||++|.|++.+.+.+...+..
T Consensus 152 iSA~~g~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 152 ISALKGDNVDTLLEIIKEYLPE 173 (298)
T ss_pred eeccccCCHHHHHHHHHHhCCC
Confidence 9999999999999999988864
No 203
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.09 E-value=1.2e-09 Score=75.08 Aligned_cols=95 Identities=21% Similarity=0.181 Sum_probs=60.7
Q ss_pred CcchHHHhcccCCEEEEEEECCC---hhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--------------CH
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSND---RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--------------NA 63 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--------------~~ 63 (110)
|+.++..+++.+|++++|+|+++ +.+++.. . .+.. .+.|+++++||+|+.+.. ..
T Consensus 82 f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i----~-~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~ 153 (590)
T TIGR00491 82 FTNLRKRGGALADLAILIVDINEGFKPQTQEAL----N-ILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQE 153 (590)
T ss_pred HHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHH----H-HHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhh
Confidence 45677888999999999999986 3333222 1 1211 468999999999985321 00
Q ss_pred HHHH--------------hhhCCCc-------ccCcceEEEeeecccCCCHHHHHHHHHHH
Q 044598 64 AEIT--------------DKLGLHS-------LRQRHWYIQSTCATSGEGLYEGLDWLSNN 103 (110)
Q Consensus 64 ~~~~--------------~~~~~~~-------~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 103 (110)
+.+. ...++.. ......+++++||++|+|++++..++...
T Consensus 154 ~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l 214 (590)
T TIGR00491 154 IQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL 214 (590)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence 0010 0011110 01234689999999999999999988653
No 204
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.09 E-value=1.9e-10 Score=75.05 Aligned_cols=95 Identities=24% Similarity=0.253 Sum_probs=60.5
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC-CHHHHHhhhC--CCcccCc
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLG--LHSLRQR 78 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~-~~~~~~~~~~--~~~~~~~ 78 (110)
+.+...++.+++++++|+|+.+... .....+.+.+ .++|+++|+||+|+.+.. ..+.+..++. .....-.
T Consensus 54 ~~~l~~~~~~~~~Il~VvD~~d~~~--s~~~~l~~~~-----~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~ 126 (360)
T TIGR03597 54 LNLLNSLGDSNALIVYVVDIFDFEG--SLIPELKRFV-----GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLK 126 (360)
T ss_pred HHHHhhcccCCcEEEEEEECcCCCC--CccHHHHHHh-----CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCC
Confidence 4566778889999999999976532 1112233322 367999999999986432 2233332210 0000001
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHH
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNN 103 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~ 103 (110)
...++.+||++|.|++++++.+.+.
T Consensus 127 ~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 127 PVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred cCcEEEecCCCCCCHHHHHHHHHHH
Confidence 1247889999999999999999765
No 205
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.09 E-value=6.3e-10 Score=76.62 Aligned_cols=89 Identities=20% Similarity=0.182 Sum_probs=57.2
Q ss_pred HHHhcc--cCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEE
Q 044598 5 WRHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYI 82 (110)
Q Consensus 5 ~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (110)
++.|+. ++|++++|+|+++.+. ...+.....+ .+.|+++|+||+|+.+......-.+.+. ...+.++
T Consensus 64 ~~~~l~~~~aDvvI~VvDat~ler---~l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~~d~~~L~----~~lg~pv 132 (591)
T TIGR00437 64 ARDYLLNEKPDLVVNVVDASNLER---NLYLTLQLLE----LGIPMILALNLVDEAEKKGIRIDEEKLE----ERLGVPV 132 (591)
T ss_pred HHHHHhhcCCCEEEEEecCCcchh---hHHHHHHHHh----cCCCEEEEEehhHHHHhCCChhhHHHHH----HHcCCCE
Confidence 444543 7999999999986432 1222222221 4689999999999854322111011110 1123578
Q ss_pred EeeecccCCCHHHHHHHHHHHH
Q 044598 83 QSTCATSGEGLYEGLDWLSNNI 104 (110)
Q Consensus 83 ~~~Sa~~~~~i~~l~~~l~~~~ 104 (110)
+++||++|+|++++++++.+..
T Consensus 133 v~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 133 VPTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 9999999999999999998753
No 206
>PRK13768 GTPase; Provisional
Probab=99.08 E-value=4e-10 Score=70.32 Aligned_cols=94 Identities=16% Similarity=0.059 Sum_probs=57.0
Q ss_pred CCEEEEEEECCChhhHHHHH-HHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCC--------Cc--------
Q 044598 12 TQGLIFVVDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL--------HS-------- 74 (110)
Q Consensus 12 ~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~--------~~-------- 74 (110)
++++++|+|+.......+.. .++....... ..++|+++|+||+|+.+....+.....+.. ..
T Consensus 129 ~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~ 207 (253)
T PRK13768 129 KSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLLSEEELERILKWLEDPEYLLEELKLEKGLQGLL 207 (253)
T ss_pred CeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHH
Confidence 88999999996533222221 1111111100 147899999999998655333332222210 00
Q ss_pred -------c--cCcceEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 75 -------L--RQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 75 -------~--~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
+ .....+++++||++++|++++.+++.+.+..
T Consensus 208 ~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~ 248 (253)
T PRK13768 208 SLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCG 248 (253)
T ss_pred HHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCC
Confidence 0 0123478999999999999999999988753
No 207
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.07 E-value=7.2e-10 Score=65.39 Aligned_cols=88 Identities=16% Similarity=0.115 Sum_probs=57.0
Q ss_pred HHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEEe
Q 044598 5 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQS 84 (110)
Q Consensus 5 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (110)
....+++||++++|+|+.++..... ..+.... .++|.++|+||+|+.+........+.+. .....++.
T Consensus 13 ~~~~i~~aD~il~v~D~~~~~~~~~--~~i~~~~-----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~-----~~~~~vi~ 80 (171)
T cd01856 13 IKEKLKLVDLVIEVRDARIPLSSRN--PLLEKIL-----GNKPRIIVLNKADLADPKKTKKWLKYFE-----SKGEKVLF 80 (171)
T ss_pred HHHHHhhCCEEEEEeeccCccCcCC--hhhHhHh-----cCCCEEEEEehhhcCChHHHHHHHHHHH-----hcCCeEEE
Confidence 3456889999999999976532111 1122221 3578999999999853311111111111 11235788
Q ss_pred eecccCCCHHHHHHHHHHHH
Q 044598 85 TCATSGEGLYEGLDWLSNNI 104 (110)
Q Consensus 85 ~Sa~~~~~i~~l~~~l~~~~ 104 (110)
+||+++.|++++.+.+.+.+
T Consensus 81 iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 81 VNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred EECCCcccHHHHHHHHHHHH
Confidence 99999999999999998875
No 208
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=1.9e-09 Score=72.53 Aligned_cols=91 Identities=15% Similarity=0.200 Sum_probs=63.5
Q ss_pred HhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCH---HHHHhhhCCCcccCcceEEE
Q 044598 7 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA---AEITDKLGLHSLRQRHWYIQ 83 (110)
Q Consensus 7 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~ 83 (110)
..+.-|+++|+|+|+.+-..-. ....+...++ .+..+|.|.||+|++.+.+. .++.+.+.+ .+.+++
T Consensus 144 Rslaac~G~lLvVDA~qGvqAQ-T~anf~lAfe----~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~-----~~~~~i 213 (650)
T KOG0462|consen 144 RSLAACDGALLVVDASQGVQAQ-TVANFYLAFE----AGLAIIPVLNKIDLPSADPERVENQLFELFDI-----PPAEVI 213 (650)
T ss_pred ehhhhcCceEEEEEcCcCchHH-HHHHHHHHHH----cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcC-----CccceE
Confidence 3467899999999998632222 2222222332 46779999999999877543 233444443 233788
Q ss_pred eeecccCCCHHHHHHHHHHHHHhh
Q 044598 84 STCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 84 ~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
.+||++|.|++++++++.+.++.-
T Consensus 214 ~vSAK~G~~v~~lL~AII~rVPpP 237 (650)
T KOG0462|consen 214 YVSAKTGLNVEELLEAIIRRVPPP 237 (650)
T ss_pred EEEeccCccHHHHHHHHHhhCCCC
Confidence 999999999999999999988643
No 209
>PRK12288 GTPase RsgA; Reviewed
Probab=99.06 E-value=1e-09 Score=71.21 Aligned_cols=90 Identities=20% Similarity=0.150 Sum_probs=60.3
Q ss_pred cccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEEeeecc
Q 044598 9 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCAT 88 (110)
Q Consensus 9 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 88 (110)
..++|.+++|++.....++.....|+... . ..++|.++|+||+|+.+............ .+...+.+++.+||+
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a-~---~~~i~~VIVlNK~DL~~~~~~~~~~~~~~--~y~~~g~~v~~vSA~ 191 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVAC-E---TLGIEPLIVLNKIDLLDDEGRAFVNEQLD--IYRNIGYRVLMVSSH 191 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHH-H---hcCCCEEEEEECccCCCcHHHHHHHHHHH--HHHhCCCeEEEEeCC
Confidence 46799999999977555566666665533 2 24689999999999965322111111111 012234588999999
Q ss_pred cCCCHHHHHHHHHHHH
Q 044598 89 SGEGLYEGLDWLSNNI 104 (110)
Q Consensus 89 ~~~~i~~l~~~l~~~~ 104 (110)
++.|++++++.+...+
T Consensus 192 tg~GideL~~~L~~ki 207 (347)
T PRK12288 192 TGEGLEELEAALTGRI 207 (347)
T ss_pred CCcCHHHHHHHHhhCC
Confidence 9999999999887543
No 210
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.05 E-value=8.3e-10 Score=69.73 Aligned_cols=90 Identities=12% Similarity=0.098 Sum_probs=59.2
Q ss_pred HHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEEe
Q 044598 5 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQS 84 (110)
Q Consensus 5 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (110)
....++.||++++|+|+..+.+... ..+.+.+ .++|+++|.||+|+.+........+.+. ..+.+++.
T Consensus 15 ~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~-----~~~~~vi~ 82 (276)
T TIGR03596 15 IKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFE-----EKGIKALA 82 (276)
T ss_pred HHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHH-----HcCCeEEE
Confidence 3556889999999999976533211 2233333 3579999999999853211112111221 11236788
Q ss_pred eecccCCCHHHHHHHHHHHHHh
Q 044598 85 TCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 85 ~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
+||+++.|++++.+.+.+.+..
T Consensus 83 iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 83 INAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred EECCCcccHHHHHHHHHHHHHH
Confidence 9999999999999988877653
No 211
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.05 E-value=1.6e-09 Score=63.00 Aligned_cols=83 Identities=17% Similarity=0.169 Sum_probs=52.3
Q ss_pred CEEEEEEECCChhhHHHHHHHHH-HHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEEeeecccCC
Q 044598 13 QGLIFVVDSNDRDRVVEARDELH-RMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGE 91 (110)
Q Consensus 13 ~~~i~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 91 (110)
|++++|+|+.++..... .++. ..+.. .++|+++|+||+|+.+..........+. ......++.+||+++.
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~~---~~~p~IiVlNK~Dl~~~~~~~~~~~~~~----~~~~~~ii~vSa~~~~ 71 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIERVLIKE---KGKKLILVLNKADLVPKEVLRKWLAYLR----HSYPTIPFKISATNGQ 71 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHHHHHhc---CCCCEEEEEechhcCCHHHHHHHHHHHH----hhCCceEEEEeccCCc
Confidence 78999999987643321 2232 22222 4689999999999853211111111111 0123467899999999
Q ss_pred CHHHHHHHHHHHH
Q 044598 92 GLYEGLDWLSNNI 104 (110)
Q Consensus 92 ~i~~l~~~l~~~~ 104 (110)
|++++.+.+.+..
T Consensus 72 gi~~L~~~i~~~~ 84 (155)
T cd01849 72 GIEKKESAFTKQT 84 (155)
T ss_pred ChhhHHHHHHHHh
Confidence 9999999887653
No 212
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.04 E-value=1.2e-09 Score=71.97 Aligned_cols=87 Identities=21% Similarity=0.256 Sum_probs=61.2
Q ss_pred hHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhh--hCCCcccCcceE
Q 044598 4 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDK--LGLHSLRQRHWY 81 (110)
Q Consensus 4 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~--~~~~~~~~~~~~ 81 (110)
+....++.||++|||+|..+- ....+..+.+++.. .++|+++|.||+|..+.. +...+. +++. +
T Consensus 76 Qa~~Ai~eADvilfvVD~~~G--it~~D~~ia~~Lr~---~~kpviLvvNK~D~~~~e--~~~~efyslG~g-------~ 141 (444)
T COG1160 76 QALIAIEEADVILFVVDGREG--ITPADEEIAKILRR---SKKPVILVVNKIDNLKAE--ELAYEFYSLGFG-------E 141 (444)
T ss_pred HHHHHHHhCCEEEEEEeCCCC--CCHHHHHHHHHHHh---cCCCEEEEEEcccCchhh--hhHHHHHhcCCC-------C
Confidence 345567899999999998752 33334455555543 569999999999975322 122222 2221 4
Q ss_pred EEeeecccCCCHHHHHHHHHHHH
Q 044598 82 IQSTCATSGEGLYEGLDWLSNNI 104 (110)
Q Consensus 82 ~~~~Sa~~~~~i~~l~~~l~~~~ 104 (110)
.+.+||..|.|+.++++++.+.+
T Consensus 142 ~~~ISA~Hg~Gi~dLld~v~~~l 164 (444)
T COG1160 142 PVPISAEHGRGIGDLLDAVLELL 164 (444)
T ss_pred ceEeehhhccCHHHHHHHHHhhc
Confidence 56899999999999999999886
No 213
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.04 E-value=7.2e-10 Score=66.36 Aligned_cols=96 Identities=15% Similarity=0.176 Sum_probs=58.0
Q ss_pred HHHhcccC---CEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceE
Q 044598 5 WRHYFQNT---QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWY 81 (110)
Q Consensus 5 ~~~~~~~~---~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 81 (110)
...|++.+ +++++|+|.+.+....+ .++...+.. .+.|+++++||+|+.+....+........ .......+
T Consensus 97 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~-~l~~~~~~ 170 (196)
T PRK00454 97 IEEYLRTRENLKGVVLLIDSRHPLKELD--LQMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRK-ALKFGDDE 170 (196)
T ss_pred HHHHHHhCccceEEEEEEecCCCCCHHH--HHHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHH-HHHhcCCc
Confidence 34555544 67888899775432221 222233322 46889999999998643222221111100 01111457
Q ss_pred EEeeecccCCCHHHHHHHHHHHHHh
Q 044598 82 IQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 82 ~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
++++||++++|++++++.+.+.+..
T Consensus 171 ~~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 171 VILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 8899999999999999999887653
No 214
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.04 E-value=3.9e-10 Score=64.59 Aligned_cols=78 Identities=13% Similarity=0.149 Sum_probs=47.2
Q ss_pred HhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEEeee
Q 044598 7 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTC 86 (110)
Q Consensus 7 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 86 (110)
..++++|++++|+|+.++.+.. ...+.+.+.... .++|+++|+||+|+.+..........+ ......++.+|
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~--~~~l~~~l~~~~-~~k~~iivlNK~DL~~~~~~~~~~~~~-----~~~~~~ii~iS 78 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFR--PPDLERYVKEVD-PRKKNILLLNKADLLTEEQRKAWAEYF-----KKEGIVVVFFS 78 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccC--CHHHHHHHHhcc-CCCcEEEEEechhcCCHHHHHHHHHHH-----HhcCCeEEEEE
Confidence 3589999999999998764322 112333332211 468999999999985322111222222 12234678899
Q ss_pred cccCCC
Q 044598 87 ATSGEG 92 (110)
Q Consensus 87 a~~~~~ 92 (110)
|+++.+
T Consensus 79 a~~~~~ 84 (141)
T cd01857 79 ALKENA 84 (141)
T ss_pred ecCCCc
Confidence 987764
No 215
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.03 E-value=1.2e-09 Score=75.20 Aligned_cols=96 Identities=19% Similarity=0.093 Sum_probs=59.3
Q ss_pred hHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCe-EEEEeeCCCCCCCCCH----HHHHhhhCCCcccCc
Q 044598 4 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMNA----AEITDKLGLHSLRQR 78 (110)
Q Consensus 4 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~ 78 (110)
.+..++.++|++++|+|+++... .+....+. ++.. .+.| +++|+||+|+.+.... +++...+.... ...
T Consensus 66 ~~~~g~~~aD~aILVVDa~~G~~-~qT~ehl~-il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~-~~~ 139 (581)
T TIGR00475 66 NAIAGGGGIDAALLVVDADEGVM-TQTGEHLA-VLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYI-FLK 139 (581)
T ss_pred HHHhhhccCCEEEEEEECCCCCc-HHHHHHHH-HHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhC-CCC
Confidence 34556789999999999986211 11122222 1221 3566 9999999998643211 11222111000 012
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHH
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
..+++++||++|+|+++++.++.+.+.
T Consensus 140 ~~~ii~vSA~tG~GI~eL~~~L~~l~~ 166 (581)
T TIGR00475 140 NAKIFKTSAKTGQGIGELKKELKNLLE 166 (581)
T ss_pred CCcEEEEeCCCCCCchhHHHHHHHHHH
Confidence 468999999999999999998877654
No 216
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.02 E-value=5.2e-10 Score=68.46 Aligned_cols=87 Identities=18% Similarity=0.155 Sum_probs=49.3
Q ss_pred HHhcccCCEEEEEEECCChh------hHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC-C---HHHHHh----hhC
Q 044598 6 RHYFQNTQGLIFVVDSNDRD------RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-N---AAEITD----KLG 71 (110)
Q Consensus 6 ~~~~~~~~~~i~v~d~~~~~------~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~-~---~~~~~~----~~~ 71 (110)
...+..+|++++|+|+++.. ........+. .... ...+|+++++||+|+.... . .+.+.. .+.
T Consensus 95 ~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~ 171 (219)
T cd01883 95 ITGASQADVAVLVVDARKGEFEAGFEKGGQTREHAL-LART--LGVKQLIVAVNKMDDVTVNWSEERYDEIKKELSPFLK 171 (219)
T ss_pred HHHhhhCCEEEEEEECCCCccccccccccchHHHHH-HHHH--cCCCeEEEEEEccccccccccHHHHHHHHHHHHHHHH
Confidence 34456799999999998631 0111111111 1111 1237899999999997421 1 112222 121
Q ss_pred CCcccCcceEEEeeecccCCCHHH
Q 044598 72 LHSLRQRHWYIQSTCATSGEGLYE 95 (110)
Q Consensus 72 ~~~~~~~~~~~~~~Sa~~~~~i~~ 95 (110)
........++++++||++|.|+++
T Consensus 172 ~~~~~~~~~~ii~iSA~tg~gi~~ 195 (219)
T cd01883 172 KVGYNPKDVPFIPISGLTGDNLIE 195 (219)
T ss_pred HcCCCcCCceEEEeecCcCCCCCc
Confidence 111123357899999999999873
No 217
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.01 E-value=4e-09 Score=69.98 Aligned_cols=90 Identities=16% Similarity=0.162 Sum_probs=54.6
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCH----HHHHhhhCCCcccCcceEEEeee
Q 044598 11 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AEITDKLGLHSLRQRHWYIQSTC 86 (110)
Q Consensus 11 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~S 86 (110)
.+|++++|+|++++.........+..+ .. ....|+++|+||+|+.+.... +++...+.. ......+++++|
T Consensus 108 ~~D~~llVVDa~~~~~~~~t~~~l~~l-~~--~~i~~iiVVlNK~Dl~~~~~~~~~~~~i~~~l~~--~~~~~~~ii~vS 182 (411)
T PRK04000 108 LMDGAILVIAANEPCPQPQTKEHLMAL-DI--IGIKNIVIVQNKIDLVSKERALENYEQIKEFVKG--TVAENAPIIPVS 182 (411)
T ss_pred hCCEEEEEEECCCCCCChhHHHHHHHH-HH--cCCCcEEEEEEeeccccchhHHHHHHHHHHHhcc--ccCCCCeEEEEE
Confidence 469999999998532111111222211 11 123578999999998653221 122222110 112346889999
Q ss_pred cccCCCHHHHHHHHHHHHH
Q 044598 87 ATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 87 a~~~~~i~~l~~~l~~~~~ 105 (110)
|++|.|+++++++|.+.+.
T Consensus 183 A~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 183 ALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred CCCCcCHHHHHHHHHHhCC
Confidence 9999999999999988764
No 218
>PRK09866 hypothetical protein; Provisional
Probab=98.99 E-value=3.3e-09 Score=73.02 Aligned_cols=94 Identities=15% Similarity=0.128 Sum_probs=59.2
Q ss_pred HHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCC--HHHHHhhhC--CCcccCcceE
Q 044598 6 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLG--LHSLRQRHWY 81 (110)
Q Consensus 6 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~--~~~~~~~~~--~~~~~~~~~~ 81 (110)
...+.++|+++||+|+....+..+ ..+.+.+.... .+.|+++|+||+|..+... .+.+..... +.........
T Consensus 253 ~eqL~eADvVLFVVDat~~~s~~D--eeIlk~Lkk~~-K~~PVILVVNKIDl~dreeddkE~Lle~V~~~L~q~~i~f~e 329 (741)
T PRK09866 253 NQQLARASAVLAVLDYTQLKSISD--EEVREAILAVG-QSVPLYVLVNKFDQQDRNSDDADQVRALISGTLMKGCITPQQ 329 (741)
T ss_pred HHHHhhCCEEEEEEeCCCCCChhH--HHHHHHHHhcC-CCCCEEEEEEcccCCCcccchHHHHHHHHHHHHHhcCCCCce
Confidence 346899999999999986433222 22333333211 1359999999999854221 233333221 1011123447
Q ss_pred EEeeecccCCCHHHHHHHHHH
Q 044598 82 IQSTCATSGEGLYEGLDWLSN 102 (110)
Q Consensus 82 ~~~~Sa~~~~~i~~l~~~l~~ 102 (110)
++++||++|.|++++++.+.+
T Consensus 330 IfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 330 IFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred EEEEeCCCCCCHHHHHHHHHh
Confidence 999999999999999998876
No 219
>PRK10218 GTP-binding protein; Provisional
Probab=98.98 E-value=4.7e-09 Score=72.43 Aligned_cols=101 Identities=16% Similarity=0.130 Sum_probs=66.2
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCH---HHHHhhhCC-Ccc-
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA---AEITDKLGL-HSL- 75 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~---~~~~~~~~~-~~~- 75 (110)
|...|..+++.+|++|+|+|+++... .+....+..... .+.|.++++||+|+.+.... +++.+.+.. ...
T Consensus 81 f~~~v~~~l~~aDg~ILVVDa~~G~~-~qt~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~ 155 (607)
T PRK10218 81 FGGEVERVMSMVDSVLLVVDAFDGPM-PQTRFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATD 155 (607)
T ss_pred hHHHHHHHHHhCCEEEEEEecccCcc-HHHHHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccc
Confidence 45678889999999999999976322 222333333322 46889999999998765432 223333211 101
Q ss_pred cCcceEEEeeecccCC----------CHHHHHHHHHHHHHh
Q 044598 76 RQRHWYIQSTCATSGE----------GLYEGLDWLSNNIAN 106 (110)
Q Consensus 76 ~~~~~~~~~~Sa~~~~----------~i~~l~~~l~~~~~~ 106 (110)
....++++.+||.+|. |+..+++.+.+.++.
T Consensus 156 ~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~ 196 (607)
T PRK10218 156 EQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPA 196 (607)
T ss_pred cccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCC
Confidence 1235789999999998 588888888887653
No 220
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.98 E-value=8.5e-09 Score=68.62 Aligned_cols=90 Identities=22% Similarity=0.300 Sum_probs=61.9
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCH---HHHHhhhCCCcccCcceEEEe
Q 044598 8 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA---AEITDKLGLHSLRQRHWYIQS 84 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 84 (110)
.+..|.++++|+|+++--.-..... ..-.+. .+..++-|.||+||+.+.+. +++.+.++++. ...+.
T Consensus 96 SLAACEGalLvVDAsQGveAQTlAN-~YlAle----~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~-----~dav~ 165 (603)
T COG0481 96 SLAACEGALLVVDASQGVEAQTLAN-VYLALE----NNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDA-----SDAVL 165 (603)
T ss_pred hHhhCCCcEEEEECccchHHHHHHH-HHHHHH----cCcEEEEeeecccCCCCCHHHHHHHHHHHhCCCc-----chhee
Confidence 3678999999999986322222112 222222 46789999999999877542 33444455432 25668
Q ss_pred eecccCCCHHHHHHHHHHHHHhh
Q 044598 85 TCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 85 ~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
+||++|.|++++++.+.+.++.-
T Consensus 166 ~SAKtG~gI~~iLe~Iv~~iP~P 188 (603)
T COG0481 166 VSAKTGIGIEDVLEAIVEKIPPP 188 (603)
T ss_pred EecccCCCHHHHHHHHHhhCCCC
Confidence 99999999999999999988643
No 221
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.97 E-value=7.9e-09 Score=63.51 Aligned_cols=86 Identities=20% Similarity=0.173 Sum_probs=52.4
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCH----HHHHhhhCCCcc-----------
Q 044598 11 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AEITDKLGLHSL----------- 75 (110)
Q Consensus 11 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~----~~~~~~~~~~~~----------- 75 (110)
.+|++++|+|+..... ......+. ++.. .++|+++|.||+|+.+.... .++...+.....
T Consensus 109 ~~D~~llVvda~~g~~-~~d~~~l~-~l~~---~~ip~ivvvNK~D~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~ 183 (224)
T cd04165 109 APDYAMLVVAANAGII-GMTKEHLG-LALA---LNIPVFVVVTKIDLAPANILQETLKDLKRILKVPGVRKLPVPVKSDD 183 (224)
T ss_pred CCCEEEEEEECCCCCc-HHHHHHHH-HHHH---cCCCEEEEEECccccCHHHHHHHHHHHHHHhcCCCccccceeeeccc
Confidence 6899999999875422 11122222 2222 46899999999998543211 122222221100
Q ss_pred ----------cCcceEEEeeecccCCCHHHHHHHHH
Q 044598 76 ----------RQRHWYIQSTCATSGEGLYEGLDWLS 101 (110)
Q Consensus 76 ----------~~~~~~~~~~Sa~~~~~i~~l~~~l~ 101 (110)
.....+++.+||.+|+|++++.+.|.
T Consensus 184 ~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 184 DVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred ceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 11234899999999999999987764
No 222
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.97 E-value=2.3e-09 Score=68.05 Aligned_cols=90 Identities=13% Similarity=0.134 Sum_probs=59.1
Q ss_pred HHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEEe
Q 044598 5 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQS 84 (110)
Q Consensus 5 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (110)
....++.||++++|+|+.++.+... .++.... .++|.++|.||+|+.+....+.....+. ..+.+++.
T Consensus 18 l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~-----~~kp~iiVlNK~DL~~~~~~~~~~~~~~-----~~~~~vi~ 85 (287)
T PRK09563 18 IKENLKLVDVVIEVLDARIPLSSEN--PMIDKII-----GNKPRLLILNKSDLADPEVTKKWIEYFE-----EQGIKALA 85 (287)
T ss_pred HHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh-----CCCCEEEEEEchhcCCHHHHHHHHHHHH-----HcCCeEEE
Confidence 3456889999999999976533211 2233333 2589999999999853211112222111 11246788
Q ss_pred eecccCCCHHHHHHHHHHHHHh
Q 044598 85 TCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 85 ~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
+||+++.|++++.+.+.+.+..
T Consensus 86 vSa~~~~gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 86 INAKKGQGVKKILKAAKKLLKE 107 (287)
T ss_pred EECCCcccHHHHHHHHHHHHHH
Confidence 9999999999999988877654
No 223
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.95 E-value=4.4e-09 Score=72.50 Aligned_cols=100 Identities=18% Similarity=0.200 Sum_probs=66.1
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCH---HHHHhhhCCCcc--c
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA---AEITDKLGLHSL--R 76 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~---~~~~~~~~~~~~--~ 76 (110)
...+..+++.+|++++|+|+++. ...+...++..... .+.|.++|+||+|+.+.... .++...+..... .
T Consensus 78 ~~ev~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e 152 (594)
T TIGR01394 78 GGEVERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDE 152 (594)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccc
Confidence 34567789999999999999753 23334445554432 46889999999998654321 222222210001 1
Q ss_pred CcceEEEeeecccCC----------CHHHHHHHHHHHHHh
Q 044598 77 QRHWYIQSTCATSGE----------GLYEGLDWLSNNIAN 106 (110)
Q Consensus 77 ~~~~~~~~~Sa~~~~----------~i~~l~~~l~~~~~~ 106 (110)
...++++++||++|. |+..+++.+.+.++.
T Consensus 153 ~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 153 QLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred cccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 224578999999995 799999999888753
No 224
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.92 E-value=1.4e-09 Score=64.53 Aligned_cols=81 Identities=17% Similarity=0.260 Sum_probs=48.6
Q ss_pred HHhccc---CCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCC----HHHHHhhhCCCcccCc
Q 044598 6 RHYFQN---TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----AAEITDKLGLHSLRQR 78 (110)
Q Consensus 6 ~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~ 78 (110)
..|++. ++++++|+|++++-+.... .+...+.. .++|+++++||+|+..... .+++...+.. ...
T Consensus 92 ~~~l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~---~~~ 163 (179)
T TIGR03598 92 EEYLEKRENLKGVVLLMDIRHPLKELDL--EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKK---DAD 163 (179)
T ss_pred HHHHHhChhhcEEEEEecCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhh---ccC
Confidence 345553 5799999998764222221 22223322 4689999999999864321 1222333221 122
Q ss_pred ceEEEeeecccCCCHH
Q 044598 79 HWYIQSTCATSGEGLY 94 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~ 94 (110)
.++++++||++|+|++
T Consensus 164 ~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 164 DPSVQLFSSLKKTGID 179 (179)
T ss_pred CCceEEEECCCCCCCC
Confidence 3479999999999974
No 225
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.92 E-value=1.3e-08 Score=67.34 Aligned_cols=88 Identities=20% Similarity=0.219 Sum_probs=60.0
Q ss_pred HHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEEee
Q 044598 6 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQST 85 (110)
Q Consensus 6 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (110)
...+++||.++||+|++.+.+-.+ ..+... ...++|+++|.||.|+......... . . ....+++.+
T Consensus 291 ~~~i~~ADlvL~v~D~~~~~~~~d--~~~~~~----~~~~~~~i~v~NK~DL~~~~~~~~~--~-----~-~~~~~~i~i 356 (454)
T COG0486 291 KKAIEEADLVLFVLDASQPLDKED--LALIEL----LPKKKPIIVVLNKADLVSKIELESE--K-----L-ANGDAIISI 356 (454)
T ss_pred HHHHHhCCEEEEEEeCCCCCchhh--HHHHHh----cccCCCEEEEEechhcccccccchh--h-----c-cCCCceEEE
Confidence 345889999999999987522221 112221 1247999999999999765432221 1 0 122367899
Q ss_pred ecccCCCHHHHHHHHHHHHHhh
Q 044598 86 CATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 86 Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
||++|+|++.+.+.|.+.....
T Consensus 357 Sa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 357 SAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred EecCccCHHHHHHHHHHHHhhc
Confidence 9999999999999998877654
No 226
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.91 E-value=4.3e-09 Score=70.14 Aligned_cols=85 Identities=16% Similarity=0.149 Sum_probs=49.2
Q ss_pred hcccCCEEEEEEECCChhhH--HHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCC------HHHHHhhhCCCcccCcc
Q 044598 8 YFQNTQGLIFVVDSNDRDRV--VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN------AAEITDKLGLHSLRQRH 79 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~------~~~~~~~~~~~~~~~~~ 79 (110)
.+..+|++++|+|+++.+.. .....++. +... ....|+++++||+|+.+... .+++...+.........
T Consensus 105 ~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~-~~~~--~~~~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~ 181 (426)
T TIGR00483 105 GASQADAAVLVVAVGDGEFEVQPQTREHAF-LART--LGINQLIVAINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDT 181 (426)
T ss_pred hhhhCCEEEEEEECCCCCcccCCchHHHHH-HHHH--cCCCeEEEEEEChhccCccHHHHHHHHHHHHHHHHHcCCCccc
Confidence 45789999999999875321 11111111 1111 12367999999999964221 11222222111112234
Q ss_pred eEEEeeecccCCCHHH
Q 044598 80 WYIQSTCATSGEGLYE 95 (110)
Q Consensus 80 ~~~~~~Sa~~~~~i~~ 95 (110)
++++++||++|.|+++
T Consensus 182 ~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 182 VPFIPISAWNGDNVIK 197 (426)
T ss_pred ceEEEeeccccccccc
Confidence 6899999999999986
No 227
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=2.5e-08 Score=66.93 Aligned_cols=88 Identities=22% Similarity=0.212 Sum_probs=57.4
Q ss_pred cccCCEEEEEEECCC---hhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHh--hhCCCcc-cCcceEE
Q 044598 9 FQNTQGLIFVVDSND---RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITD--KLGLHSL-RQRHWYI 82 (110)
Q Consensus 9 ~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~--~~~~~~~-~~~~~~~ 82 (110)
.+-+|.+++|+|+.+ |++.+. +... + ..+.|++++.||+|.++..+.....+ ..++... -.....+
T Consensus 76 a~vtDIaILVVa~dDGv~pQTiEA----I~ha-k---~a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~ 147 (509)
T COG0532 76 ASVTDIAILVVAADDGVMPQTIEA----INHA-K---AAGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIF 147 (509)
T ss_pred CccccEEEEEEEccCCcchhHHHH----HHHH-H---HCCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEE
Confidence 456899999999886 333322 2221 1 15899999999999986643322111 1122211 1344689
Q ss_pred EeeecccCCCHHHHHHHHHHHH
Q 044598 83 QSTCATSGEGLYEGLDWLSNNI 104 (110)
Q Consensus 83 ~~~Sa~~~~~i~~l~~~l~~~~ 104 (110)
+++||++|+|+++++..+.-..
T Consensus 148 VpvSA~tg~Gi~eLL~~ill~a 169 (509)
T COG0532 148 VPVSAKTGEGIDELLELILLLA 169 (509)
T ss_pred EEeeccCCCCHHHHHHHHHHHH
Confidence 9999999999999998776543
No 228
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.89 E-value=3.8e-08 Score=67.91 Aligned_cols=94 Identities=23% Similarity=0.252 Sum_probs=59.0
Q ss_pred CcchHHHhcccCCEEEEEEECCC---hhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCC--------------H
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSND---RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--------------A 63 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~--------------~ 63 (110)
|+.++...++.+|++++|+|+++ +.++... . .+.. .+.|+++++||+|+..... .
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i----~-~~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~ 155 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAI----N-ILKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQS 155 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHH----H-HHHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhh
Confidence 34567777889999999999986 3333322 1 1211 4689999999999852110 0
Q ss_pred HH-----------HHhhh---CCCc-------ccCcceEEEeeecccCCCHHHHHHHHHH
Q 044598 64 AE-----------ITDKL---GLHS-------LRQRHWYIQSTCATSGEGLYEGLDWLSN 102 (110)
Q Consensus 64 ~~-----------~~~~~---~~~~-------~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 102 (110)
.. +...+ ++.. ......+++++||++|+|+++++..+..
T Consensus 156 ~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 156 QRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 00 10111 1110 0113468999999999999999988764
No 229
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.88 E-value=1e-08 Score=65.64 Aligned_cols=97 Identities=22% Similarity=0.211 Sum_probs=60.3
Q ss_pred hcccCCEEEEEEECCChh---hHHHHHHHHHHHhcC-CCCCCCeEEEEeeCCCCCCCC-CHHHHHhhhCCCcccCcceEE
Q 044598 8 YFQNTQGLIFVVDSNDRD---RVVEARDELHRMLNE-DELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYI 82 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~ 82 (110)
.+++|.++++|+|++..+ ..+++.....++-+. ..+.++|.++|+||+|+.... ..+.....+.. .......+
T Consensus 234 HIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~--~~~~~~~~ 311 (369)
T COG0536 234 HIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAE--ALGWEVFY 311 (369)
T ss_pred HHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHH--hcCCCcce
Confidence 478999999999988543 234443333333222 345689999999999964432 22222222211 00111122
Q ss_pred EeeecccCCCHHHHHHHHHHHHHhh
Q 044598 83 QSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 83 ~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
++||.+++|++++...+.+.+...
T Consensus 312 -~ISa~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 312 -LISALTREGLDELLRALAELLEET 335 (369)
T ss_pred -eeehhcccCHHHHHHHHHHHHHHh
Confidence 299999999999999988887654
No 230
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.87 E-value=4.9e-09 Score=59.89 Aligned_cols=80 Identities=21% Similarity=0.279 Sum_probs=53.4
Q ss_pred cccCCEEEEEEECCChhh-HHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCC-CCCHHHHHhhhCCCcccCcceEEEeee
Q 044598 9 FQNTQGLIFVVDSNDRDR-VVEARDELHRMLNEDELRDAVLLVFANKQDLPN-AMNAAEITDKLGLHSLRQRHWYIQSTC 86 (110)
Q Consensus 9 ~~~~~~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~S 86 (110)
-.+||.+++|.|++++.+ +.. .+... -++|++-|.||+|+.. ..+.+.....+..... . +++++|
T Consensus 61 a~dad~V~ll~dat~~~~~~pP---~fa~~------f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~--~--~if~vS 127 (143)
T PF10662_consen 61 AQDADVVLLLQDATEPRSVFPP---GFASM------FNKPVIGVITKIDLPSDDANIERAKKWLKNAGV--K--EIFEVS 127 (143)
T ss_pred HhhCCEEEEEecCCCCCccCCc---hhhcc------cCCCEEEEEECccCccchhhHHHHHHHHHHcCC--C--CeEEEE
Confidence 458999999999997643 211 11111 3689999999999973 2233333334322111 1 468999
Q ss_pred cccCCCHHHHHHHHH
Q 044598 87 ATSGEGLYEGLDWLS 101 (110)
Q Consensus 87 a~~~~~i~~l~~~l~ 101 (110)
+.+|+|++++.++|.
T Consensus 128 ~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 128 AVTGEGIEELKDYLE 142 (143)
T ss_pred CCCCcCHHHHHHHHh
Confidence 999999999998874
No 231
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.87 E-value=2e-08 Score=58.29 Aligned_cols=88 Identities=19% Similarity=0.192 Sum_probs=52.4
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhC--CCcccCcceEEEeeecc
Q 044598 11 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG--LHSLRQRHWYIQSTCAT 88 (110)
Q Consensus 11 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Sa~ 88 (110)
.++++++++|........ ...+...+.. .+.|+++++||+|+.............. +.. .....+++++||+
T Consensus 81 ~~~~~~~v~d~~~~~~~~--~~~~~~~l~~---~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~Sa~ 154 (170)
T cd01876 81 NLKGVVLLIDSRHGPTEI--DLEMLDWLEE---LGIPFLVVLTKADKLKKSELAKALKEIKKELKL-FEIDPPIILFSSL 154 (170)
T ss_pred hhhEEEEEEEcCcCCCHh--HHHHHHHHHH---cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHh-ccCCCceEEEecC
Confidence 356889999987542211 1112222222 3589999999999854322111111111 000 1233478899999
Q ss_pred cCCCHHHHHHHHHHHH
Q 044598 89 SGEGLYEGLDWLSNNI 104 (110)
Q Consensus 89 ~~~~i~~l~~~l~~~~ 104 (110)
++.|+.+++++|.+.+
T Consensus 155 ~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 155 KGQGIDELRALIEKWL 170 (170)
T ss_pred CCCCHHHHHHHHHHhC
Confidence 9999999999998753
No 232
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.86 E-value=2.2e-08 Score=62.00 Aligned_cols=99 Identities=18% Similarity=0.214 Sum_probs=63.8
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCC---HHHHHhhhCC------
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGL------ 72 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~---~~~~~~~~~~------ 72 (110)
...+..+++.+|++++|+|+++.... ....++... .. .++|+++++||+|+.+... .+++...++.
T Consensus 78 ~~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~-~~---~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~ 152 (237)
T cd04168 78 IAEVERSLSVLDGAILVISAVEGVQA-QTRILWRLL-RK---LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQ 152 (237)
T ss_pred HHHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHH-HH---cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEE
Confidence 44577889999999999999864322 222333322 22 4689999999999864321 1111111110
Q ss_pred ------------------------------------Ccc--------------cCcceEEEeeecccCCCHHHHHHHHHH
Q 044598 73 ------------------------------------HSL--------------RQRHWYIQSTCATSGEGLYEGLDWLSN 102 (110)
Q Consensus 73 ------------------------------------~~~--------------~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 102 (110)
... ...-+|++..||.++.|+..+++.+.+
T Consensus 153 ~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~ 232 (237)
T cd04168 153 KVGLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITK 232 (237)
T ss_pred CCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHH
Confidence 000 112368999999999999999999988
Q ss_pred HHH
Q 044598 103 NIA 105 (110)
Q Consensus 103 ~~~ 105 (110)
.++
T Consensus 233 ~~p 235 (237)
T cd04168 233 LFP 235 (237)
T ss_pred hcC
Confidence 765
No 233
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.85 E-value=2.5e-08 Score=61.63 Aligned_cols=50 Identities=24% Similarity=0.123 Sum_probs=36.5
Q ss_pred CCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEEeeecccCCCHHHHHHHHHHHH
Q 044598 45 DAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 104 (110)
Q Consensus 45 ~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 104 (110)
..|.++|+||+|+.+. ++... +. ...+++++||++|.|++++++.+.+.+
T Consensus 176 y~p~iiV~NK~Dl~~~---~~~~~-~~------~~~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 176 YIPCLYVYNKIDLISI---EELDL-LA------RQPNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred EeeEEEEEECccCCCH---HHHHH-Hh------cCCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 3699999999998532 23222 11 112477899999999999999998865
No 234
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.85 E-value=3e-08 Score=71.83 Aligned_cols=93 Identities=26% Similarity=0.277 Sum_probs=57.5
Q ss_pred chHHHhcccCCEEEEEEECCC---hhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCC-----------------
Q 044598 3 PLWRHYFQNTQGLIFVVDSND---RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----------------- 62 (110)
Q Consensus 3 ~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~----------------- 62 (110)
.+....+..+|++++|+|+++ +.+.+. +. .+.. .++|+++|+||+|+.....
T Consensus 541 ~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~----I~-~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~ 612 (1049)
T PRK14845 541 SLRKRGGSLADLAVLVVDINEGFKPQTIEA----IN-ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQH 612 (1049)
T ss_pred HHHHhhcccCCEEEEEEECcccCCHhHHHH----HH-HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHH
Confidence 344556788999999999975 222222 22 2222 3689999999999853211
Q ss_pred -HHHHH----------hhhCCCc-------ccCcceEEEeeecccCCCHHHHHHHHHHH
Q 044598 63 -AAEIT----------DKLGLHS-------LRQRHWYIQSTCATSGEGLYEGLDWLSNN 103 (110)
Q Consensus 63 -~~~~~----------~~~~~~~-------~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 103 (110)
.+++. ...++.. ......+++++||++|+|+++++.++...
T Consensus 613 ~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l 671 (1049)
T PRK14845 613 ALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL 671 (1049)
T ss_pred HHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence 01110 0111110 01235689999999999999999887643
No 235
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.85 E-value=1.2e-08 Score=68.08 Aligned_cols=85 Identities=19% Similarity=0.236 Sum_probs=48.5
Q ss_pred cccCCEEEEEEECCChhhH-HHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCH------HHHHhhhCCCcccCcceE
Q 044598 9 FQNTQGLIFVVDSNDRDRV-VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA------AEITDKLGLHSLRQRHWY 81 (110)
Q Consensus 9 ~~~~~~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~------~~~~~~~~~~~~~~~~~~ 81 (110)
+..+|++++|+|++++... ......+ .+... ....|+++++||+|+.+.... +++...+..........+
T Consensus 105 ~~~aD~~ilVvDa~~~~~~~~~~~~~~-~~~~~--~~~~~iivviNK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ 181 (425)
T PRK12317 105 ASQADAAVLVVAADDAGGVMPQTREHV-FLART--LGINQLIVAINKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIP 181 (425)
T ss_pred hhcCCEEEEEEEcccCCCCCcchHHHH-HHHHH--cCCCeEEEEEEccccccccHHHHHHHHHHHHHHHHhhCCCcCcce
Confidence 5689999999999862111 1111122 12211 123579999999998652111 122222211111222468
Q ss_pred EEeeecccCCCHHHH
Q 044598 82 IQSTCATSGEGLYEG 96 (110)
Q Consensus 82 ~~~~Sa~~~~~i~~l 96 (110)
++++||++|.|+++.
T Consensus 182 ii~iSA~~g~gi~~~ 196 (425)
T PRK12317 182 FIPVSAFEGDNVVKK 196 (425)
T ss_pred EEEeecccCCCcccc
Confidence 999999999999874
No 236
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.84 E-value=2.3e-08 Score=69.32 Aligned_cols=92 Identities=20% Similarity=0.151 Sum_probs=56.2
Q ss_pred HhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCe-EEEEeeCCCCCCCCCHH----HHHhhhCCCcccCcceE
Q 044598 7 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMNAA----EITDKLGLHSLRQRHWY 81 (110)
Q Consensus 7 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~Dl~~~~~~~----~~~~~~~~~~~~~~~~~ 81 (110)
..+.++|++++|+|+++.. ..+....+. ++.. .+.| +++|+||+|+.+....+ ++...+.. ......+
T Consensus 70 ~g~~~~D~~lLVVda~eg~-~~qT~ehl~-il~~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~--~~~~~~~ 142 (614)
T PRK10512 70 AGVGGIDHALLVVACDDGV-MAQTREHLA-ILQL---TGNPMLTVALTKADRVDEARIAEVRRQVKAVLRE--YGFAEAK 142 (614)
T ss_pred HHhhcCCEEEEEEECCCCC-cHHHHHHHH-HHHH---cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHh--cCCCCCc
Confidence 3577899999999987631 112222222 2221 2445 68999999986432111 22222210 1112357
Q ss_pred EEeeecccCCCHHHHHHHHHHHHH
Q 044598 82 IQSTCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 82 ~~~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
++++||++|.|++++++.|.+...
T Consensus 143 ii~VSA~tG~gI~~L~~~L~~~~~ 166 (614)
T PRK10512 143 LFVTAATEGRGIDALREHLLQLPE 166 (614)
T ss_pred EEEEeCCCCCCCHHHHHHHHHhhc
Confidence 899999999999999999987543
No 237
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=8.8e-08 Score=57.81 Aligned_cols=99 Identities=23% Similarity=0.368 Sum_probs=64.6
Q ss_pred HHHhcc---cCCEEEEEEECCCh-hhHHHHHHHHHHHhcCC--CCCCCeEEEEeeCCCCCCCCCHHHHHhhhC-------
Q 044598 5 WRHYFQ---NTQGLIFVVDSNDR-DRVVEARDELHRMLNED--ELRDAVLLVFANKQDLPNAMNAAEITDKLG------- 71 (110)
Q Consensus 5 ~~~~~~---~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~------- 71 (110)
...|+. .+.+++||+|+... ....+..+.+..++... ....+|++|++||.|+..+.+.+.+++.+.
T Consensus 99 l~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr 178 (238)
T KOG0090|consen 99 LLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLR 178 (238)
T ss_pred HHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHH
Confidence 344555 78999999998643 33555566677666554 235689999999999966554333222110
Q ss_pred ----------CCc------------------ccCcceEEEeeecccCCCHHHHHHHHHHHH
Q 044598 72 ----------LHS------------------LRQRHWYIQSTCATSGEGLYEGLDWLSNNI 104 (110)
Q Consensus 72 ----------~~~------------------~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 104 (110)
..+ .......+.++|++++ +++++.+|+.+.+
T Consensus 179 ~sRsa~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 179 ESRSALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL 238 (238)
T ss_pred HHHhhhhccccccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence 000 0113357889999988 8999999998753
No 238
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.83 E-value=7.6e-09 Score=57.30 Aligned_cols=51 Identities=16% Similarity=0.311 Sum_probs=37.6
Q ss_pred hHHHhcccCCEEEEEEECCChhhHHHHHH---HHHHHhcCCCCCCCeEEEEeeCCC
Q 044598 4 LWRHYFQNTQGLIFVVDSNDRDRVVEARD---ELHRMLNEDELRDAVLLVFANKQD 56 (110)
Q Consensus 4 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~iiv~nK~D 56 (110)
.+..+++++|++++|+|.+++.+++.+.. |+..+... ..+.|+++|+||.|
T Consensus 66 ~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D 119 (119)
T PF08477_consen 66 QHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD 119 (119)
T ss_dssp TSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred cccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence 34556899999999999999888877643 44444321 24699999999998
No 239
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.83 E-value=3.1e-08 Score=70.15 Aligned_cols=84 Identities=19% Similarity=0.114 Sum_probs=55.5
Q ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEEeeeccc
Q 044598 10 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 89 (110)
Q Consensus 10 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 89 (110)
+.+|++++|+|+++.++. ..+.....+ .++|+++++||+|+.+......-.+.+. ...+.+++++||++
T Consensus 84 ~~aD~vI~VvDat~ler~---l~l~~ql~e----~giPvIvVlNK~Dl~~~~~i~id~~~L~----~~LG~pVvpiSA~~ 152 (772)
T PRK09554 84 GDADLLINVVDASNLERN---LYLTLQLLE----LGIPCIVALNMLDIAEKQNIRIDIDALS----ARLGCPVIPLVSTR 152 (772)
T ss_pred cCCCEEEEEecCCcchhh---HHHHHHHHH----cCCCEEEEEEchhhhhccCcHHHHHHHH----HHhCCCEEEEEeec
Confidence 489999999999874332 223333322 4689999999999864332111111110 11234788999999
Q ss_pred CCCHHHHHHHHHHHH
Q 044598 90 GEGLYEGLDWLSNNI 104 (110)
Q Consensus 90 ~~~i~~l~~~l~~~~ 104 (110)
|+|++++.+.+.+..
T Consensus 153 g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 153 GRGIEALKLAIDRHQ 167 (772)
T ss_pred CCCHHHHHHHHHHhh
Confidence 999999999887754
No 240
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.82 E-value=2.5e-08 Score=66.97 Aligned_cols=92 Identities=14% Similarity=0.157 Sum_probs=56.1
Q ss_pred cccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCH----HHHHhhhCCCcccCcceEEEe
Q 044598 9 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AEITDKLGLHSLRQRHWYIQS 84 (110)
Q Consensus 9 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 84 (110)
...+|++++|+|+.+.....+..+.+.- ... ..-.++++|.||+|+.+.... +++...+.. ......++++
T Consensus 138 ~~~~D~alLVVda~~g~~~~qT~ehl~i-~~~--lgi~~iIVvlNKiDlv~~~~~~~~~~ei~~~l~~--~~~~~~~iip 212 (460)
T PTZ00327 138 AAVMDAALLLIAANESCPQPQTSEHLAA-VEI--MKLKHIIILQNKIDLVKEAQAQDQYEEIRNFVKG--TIADNAPIIP 212 (460)
T ss_pred HhhCCEEEEEEECCCCccchhhHHHHHH-HHH--cCCCcEEEEEecccccCHHHHHHHHHHHHHHHHh--hccCCCeEEE
Confidence 5678999999999863111111222221 111 123568999999998643211 122222110 1123568999
Q ss_pred eecccCCCHHHHHHHHHHHHH
Q 044598 85 TCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 85 ~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
+||++|.|++.+++.|.+.+.
T Consensus 213 VSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 213 ISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred eeCCCCCCHHHHHHHHHhhCC
Confidence 999999999999999987654
No 241
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=98.81 E-value=1.4e-08 Score=59.99 Aligned_cols=99 Identities=15% Similarity=0.124 Sum_probs=71.6
Q ss_pred chHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCC---CCeEEEEeeCCCCCCCCCH---HHHHhhhCCCccc
Q 044598 3 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR---DAVLLVFANKQDLPNAMNA---AEITDKLGLHSLR 76 (110)
Q Consensus 3 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~iiv~nK~Dl~~~~~~---~~~~~~~~~~~~~ 76 (110)
.|.+.||+.+.+..+|+|.+....++....|..+..+...++ ..|+++..||||....... ..+..... .
T Consensus 90 ~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~k----e 165 (229)
T KOG4423|consen 90 NMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKK----E 165 (229)
T ss_pred ceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHh----c
Confidence 366789999999999999998777877777877765443332 4789999999998654311 22222211 1
Q ss_pred CcceEEEeeecccCCCHHHHHHHHHHHHH
Q 044598 77 QRHWYIQSTCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 77 ~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
+....++++|++.+.++++....+.+.+.
T Consensus 166 ngf~gwtets~Kenkni~Ea~r~lVe~~l 194 (229)
T KOG4423|consen 166 NGFEGWTETSAKENKNIPEAQRELVEKIL 194 (229)
T ss_pred cCccceeeeccccccChhHHHHHHHHHHH
Confidence 22346889999999999999998888765
No 242
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.78 E-value=1.1e-07 Score=61.52 Aligned_cols=105 Identities=25% Similarity=0.441 Sum_probs=74.9
Q ss_pred cchHHHhcccCCEEEEEEECCChh----------hHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCC------------
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRD----------RVVEARDELHRMLNEDELRDAVLLVFANKQDLPN------------ 59 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~------------ 59 (110)
|+.|-+++.+++++|||++.++.+ .+.++...+..+..+....+.++++++||.|+-.
T Consensus 209 RrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DLFeEKi~~~~~~~~F 288 (354)
T KOG0082|consen 209 RKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDLFEEKIKKVPLTDCF 288 (354)
T ss_pred hhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHHHHHHhccCchhhhC
Confidence 568999999999999999887632 3556667888888888888999999999999821
Q ss_pred -----CCCHHHHHh----hh-CCCcccCcceEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 60 -----AMNAAEITD----KL-GLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 60 -----~~~~~~~~~----~~-~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
....++... .+ .+.....+.+-++.+.|.+.++|+.+|..+.+.+.+
T Consensus 289 pdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~ 345 (354)
T KOG0082|consen 289 PDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQ 345 (354)
T ss_pred cCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHH
Confidence 111222111 11 111112256667788999999999999888877754
No 243
>PRK13796 GTPase YqeH; Provisional
Probab=98.75 E-value=3.1e-08 Score=64.90 Aligned_cols=88 Identities=23% Similarity=0.236 Sum_probs=53.3
Q ss_pred ccCC-EEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC-CHHHHHhhhC--CCcccCcceEEEee
Q 044598 10 QNTQ-GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLG--LHSLRQRHWYIQST 85 (110)
Q Consensus 10 ~~~~-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~ 85 (110)
..++ .+++|+|+.+... .....+.+.. .++|+++|+||+|+.+.. ..+.+..... .....-....++.+
T Consensus 67 ~~~~~lIv~VVD~~D~~~--s~~~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~v 139 (365)
T PRK13796 67 GDSDALVVNVVDIFDFNG--SWIPGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLI 139 (365)
T ss_pred cccCcEEEEEEECccCCC--chhHHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEE
Confidence 3445 8999999987431 1122333332 367899999999996432 2222222211 00000011257899
Q ss_pred ecccCCCHHHHHHHHHHHH
Q 044598 86 CATSGEGLYEGLDWLSNNI 104 (110)
Q Consensus 86 Sa~~~~~i~~l~~~l~~~~ 104 (110)
||+++.|++++++.+.+..
T Consensus 140 SAk~g~gI~eL~~~I~~~~ 158 (365)
T PRK13796 140 SAQKGHGIDELLEAIEKYR 158 (365)
T ss_pred ECCCCCCHHHHHHHHHHhc
Confidence 9999999999999997654
No 244
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.73 E-value=9.4e-08 Score=57.62 Aligned_cols=82 Identities=20% Similarity=0.186 Sum_probs=46.9
Q ss_pred HhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCe-EEEEeeCCCCCCCCC-HH----HHHhhhCCCcccCcce
Q 044598 7 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN-AA----EITDKLGLHSLRQRHW 80 (110)
Q Consensus 7 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~Dl~~~~~-~~----~~~~~~~~~~~~~~~~ 80 (110)
..+..+|++++|+|+..... ......+..+ .. .++| ++++.||+|+..... .+ ++...+....+.....
T Consensus 84 ~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~-~~---~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v 158 (195)
T cd01884 84 TGAAQMDGAILVVSATDGPM-PQTREHLLLA-RQ---VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDNT 158 (195)
T ss_pred HHhhhCCEEEEEEECCCCCc-HHHHHHHHHH-HH---cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCC
Confidence 34678999999999875321 1112222222 21 3455 789999999853221 11 1222221111122357
Q ss_pred EEEeeecccCCCH
Q 044598 81 YIQSTCATSGEGL 93 (110)
Q Consensus 81 ~~~~~Sa~~~~~i 93 (110)
+++++||++|.|+
T Consensus 159 ~iipiSa~~g~n~ 171 (195)
T cd01884 159 PIVRGSALKALEG 171 (195)
T ss_pred eEEEeeCccccCC
Confidence 8999999999985
No 245
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.69 E-value=1.2e-07 Score=57.56 Aligned_cols=88 Identities=18% Similarity=0.108 Sum_probs=48.1
Q ss_pred HHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCH--HHHHhhhC--CCcccCcce
Q 044598 5 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA--AEITDKLG--LHSLRQRHW 80 (110)
Q Consensus 5 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~--~~~~~~~~--~~~~~~~~~ 80 (110)
+...++.+|++++|+|+++... ..... ...+... ...+++++|+||+|+.+.... ..+...+. .........
T Consensus 94 ~~~~~~~ad~~llVvD~~~~~~-~~~~~-~~~~~~~--~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 169 (208)
T cd04166 94 MVTGASTADLAILLVDARKGVL-EQTRR-HSYILSL--LGIRHVVVAVNKMDLVDYSEEVFEEIVADYLAFAAKLGIEDI 169 (208)
T ss_pred HHHhhhhCCEEEEEEECCCCcc-HhHHH-HHHHHHH--cCCCcEEEEEEchhcccCCHHHHHHHHHHHHHHHHHcCCCCc
Confidence 3445789999999999986421 11111 1112211 122457889999998643211 11111110 000111235
Q ss_pred EEEeeecccCCCHHHH
Q 044598 81 YIQSTCATSGEGLYEG 96 (110)
Q Consensus 81 ~~~~~Sa~~~~~i~~l 96 (110)
+++++||++|.|+.+.
T Consensus 170 ~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 170 TFIPISALDGDNVVSR 185 (208)
T ss_pred eEEEEeCCCCCCCccC
Confidence 6899999999998753
No 246
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=2.8e-08 Score=58.86 Aligned_cols=97 Identities=14% Similarity=0.179 Sum_probs=71.9
Q ss_pred hHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEE
Q 044598 4 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQ 83 (110)
Q Consensus 4 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (110)
+...||-+..++|+++|.+..-.+.....|..++.... .++|+++.+||.|...... .. ........+.+.++
T Consensus 75 lrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~--~NiPiv~cGNKvDi~~r~~----k~-k~v~~~rkknl~y~ 147 (216)
T KOG0096|consen 75 LRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVR--ENIPIVLCGNKVDIKARKV----KA-KPVSFHRKKNLQYY 147 (216)
T ss_pred cccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHh--cCCCeeeeccceecccccc----cc-ccceeeecccceeE
Confidence 44567888899999999987777777777777765442 4689999999999754321 11 11111235667889
Q ss_pred eeecccCCCHHHHHHHHHHHHHhh
Q 044598 84 STCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 84 ~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
++||+++.|.+..|-|+++.+...
T Consensus 148 ~iSaksn~NfekPFl~LarKl~G~ 171 (216)
T KOG0096|consen 148 EISAKSNYNFERPFLWLARKLTGD 171 (216)
T ss_pred EeecccccccccchHHHhhhhcCC
Confidence 999999999999999999887654
No 247
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.65 E-value=1.2e-07 Score=56.31 Aligned_cols=61 Identities=33% Similarity=0.529 Sum_probs=39.9
Q ss_pred hcccCCEEEEEEECCC-hhhHHHHHHHHHHHhcCCC--CCCCeEEEEeeCCCCCCCCCHHHHHh
Q 044598 8 YFQNTQGLIFVVDSND-RDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNAMNAAEITD 68 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~iiv~nK~Dl~~~~~~~~~~~ 68 (110)
+..++.++|||+|++. +....+..+.+..++.... ...+|++|++||+|+..+.+...++.
T Consensus 72 ~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~ 135 (181)
T PF09439_consen 72 YLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKK 135 (181)
T ss_dssp HHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHH
T ss_pred chhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHH
Confidence 6889999999999974 3446666667776665432 24699999999999987765444433
No 248
>PRK01889 GTPase RsgA; Reviewed
Probab=98.62 E-value=5.5e-07 Score=58.93 Aligned_cols=85 Identities=21% Similarity=0.169 Sum_probs=53.4
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEEeeec
Q 044598 8 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 87 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 87 (110)
...++|.+++|+++..+-........+..+ . ..+.|.++|+||+|+.+.. .+........ ..+.+++.+|+
T Consensus 109 iaANvD~vliV~s~~p~~~~~~ldr~L~~a-~---~~~i~piIVLNK~DL~~~~-~~~~~~~~~~----~~g~~Vi~vSa 179 (356)
T PRK01889 109 IAANVDTVFIVCSLNHDFNLRRIERYLALA-W---ESGAEPVIVLTKADLCEDA-EEKIAEVEAL----APGVPVLAVSA 179 (356)
T ss_pred EEEeCCEEEEEEecCCCCChhHHHHHHHHH-H---HcCCCEEEEEEChhcCCCH-HHHHHHHHHh----CCCCcEEEEEC
Confidence 367899999999985222222222222222 1 2467779999999996531 1111111111 33568899999
Q ss_pred ccCCCHHHHHHHHH
Q 044598 88 TSGEGLYEGLDWLS 101 (110)
Q Consensus 88 ~~~~~i~~l~~~l~ 101 (110)
+++.|++++..++.
T Consensus 180 ~~g~gl~~L~~~L~ 193 (356)
T PRK01889 180 LDGEGLDVLAAWLS 193 (356)
T ss_pred CCCccHHHHHHHhh
Confidence 99999999988875
No 249
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.61 E-value=5e-07 Score=54.68 Aligned_cols=80 Identities=20% Similarity=0.239 Sum_probs=51.2
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeE--EEEeeCCCCCCCC--CHHHHHhhhCCCcccCcceEEEeeec
Q 044598 12 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVL--LVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCA 87 (110)
Q Consensus 12 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa 87 (110)
++.++.|+|+.+..+... ... ..... ++++||+|+.+.. ..+.+.+.... . +...+++++||
T Consensus 113 ~~~~i~vvD~~~~~~~~~---~~~--------~qi~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~--~-~~~~~i~~~Sa 178 (199)
T TIGR00101 113 ADLTIFVIDVAAGDKIPR---KGG--------PGITRSDLLVINKIDLAPMVGADLGVMERDAKK--M-RGEKPFIFTNL 178 (199)
T ss_pred hCcEEEEEEcchhhhhhh---hhH--------hHhhhccEEEEEhhhccccccccHHHHHHHHHH--h-CCCCCEEEEEC
Confidence 577999999875433211 000 12233 8999999997532 22222222211 1 23467899999
Q ss_pred ccCCCHHHHHHHHHHHHH
Q 044598 88 TSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 88 ~~~~~i~~l~~~l~~~~~ 105 (110)
++|+|++++++++.++..
T Consensus 179 ~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 179 KTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred CCCCCHHHHHHHHHhhcC
Confidence 999999999999998764
No 250
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=5.1e-07 Score=61.29 Aligned_cols=88 Identities=18% Similarity=0.122 Sum_probs=57.0
Q ss_pred cccCCEEEEEEECCC---hhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhh--CCCc-ccCcceEE
Q 044598 9 FQNTQGLIFVVDSND---RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKL--GLHS-LRQRHWYI 82 (110)
Q Consensus 9 ~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~--~~~~-~~~~~~~~ 82 (110)
.+-+|.+++|+.+.+ +++.+. +.. ....+.|++++.||+|.++..+..-..+.+ ++.- ......++
T Consensus 222 A~vtDIvVLVVAadDGVmpQT~Ea----Ikh----Ak~A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQv 293 (683)
T KOG1145|consen 222 ANVTDIVVLVVAADDGVMPQTLEA----IKH----AKSANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQV 293 (683)
T ss_pred CccccEEEEEEEccCCccHhHHHH----HHH----HHhcCCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCceeE
Confidence 456899999997765 223322 222 222689999999999987665432222222 1111 11345689
Q ss_pred EeeecccCCCHHHHHHHHHHHH
Q 044598 83 QSTCATSGEGLYEGLDWLSNNI 104 (110)
Q Consensus 83 ~~~Sa~~~~~i~~l~~~l~~~~ 104 (110)
+++||++|+|++.+.+.+....
T Consensus 294 ipiSAl~g~nl~~L~eaill~A 315 (683)
T KOG1145|consen 294 IPISALTGENLDLLEEAILLLA 315 (683)
T ss_pred EEeecccCCChHHHHHHHHHHH
Confidence 9999999999999988876543
No 251
>PRK13351 elongation factor G; Reviewed
Probab=98.58 E-value=1.1e-06 Score=62.04 Aligned_cols=54 Identities=17% Similarity=0.090 Sum_probs=38.1
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~ 60 (110)
...+..+++.+|++++|+|+++....... ..+.... . .++|+++++||+|+.+.
T Consensus 87 ~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~~~~~-~---~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 87 TGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVWRQAD-R---YGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHH-h---cCCCEEEEEECCCCCCC
Confidence 44678889999999999999875443322 2232221 1 46899999999998654
No 252
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.55 E-value=1.2e-06 Score=59.94 Aligned_cols=51 Identities=20% Similarity=0.274 Sum_probs=34.5
Q ss_pred HHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC
Q 044598 5 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60 (110)
Q Consensus 5 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~ 60 (110)
...+++.+|++|+|+|+++... .....++.. .. ..++|+++++||+|+.+.
T Consensus 96 ~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~-~~---~~~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 96 TYRTLTAVDSALMVIDAAKGVE-PQTRKLMEV-CR---LRDTPIFTFINKLDRDGR 146 (526)
T ss_pred HHHHHHHCCEEEEEEecCCCCC-HHHHHHHHH-HH---hcCCCEEEEEECCccccc
Confidence 4567899999999999975321 112223322 21 257999999999998654
No 253
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.53 E-value=5.8e-07 Score=62.16 Aligned_cols=81 Identities=19% Similarity=0.153 Sum_probs=57.3
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC----CHHHHHhhhCCCcccCcceEEEeee
Q 044598 11 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSLRQRHWYIQSTC 86 (110)
Q Consensus 11 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~S 86 (110)
+.|+++.|+|+++.+.. ....-++++ .+.|++++.|++|..+.. +.+.+.+.+ +.|++++|
T Consensus 81 ~~D~ivnVvDAtnLeRn---LyltlQLlE----~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~L--------GvPVv~tv 145 (653)
T COG0370 81 KPDLIVNVVDATNLERN---LYLTLQLLE----LGIPMILALNMIDEAKKRGIRIDIEKLSKLL--------GVPVVPTV 145 (653)
T ss_pred CCCEEEEEcccchHHHH---HHHHHHHHH----cCCCeEEEeccHhhHHhcCCcccHHHHHHHh--------CCCEEEEE
Confidence 57999999999975432 122222222 478999999999985543 344444444 44889999
Q ss_pred cccCCCHHHHHHHHHHHHHh
Q 044598 87 ATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 87 a~~~~~i~~l~~~l~~~~~~ 106 (110)
|++|+|++++...+.+...+
T Consensus 146 A~~g~G~~~l~~~i~~~~~~ 165 (653)
T COG0370 146 AKRGEGLEELKRAIIELAES 165 (653)
T ss_pred eecCCCHHHHHHHHHHhccc
Confidence 99999999999988765443
No 254
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.51 E-value=1.1e-06 Score=52.72 Aligned_cols=96 Identities=15% Similarity=0.262 Sum_probs=60.8
Q ss_pred hHHHhccc---CCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCH----HHHHhhhCCCccc
Q 044598 4 LWRHYFQN---TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AEITDKLGLHSLR 76 (110)
Q Consensus 4 ~~~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~----~~~~~~~~~~~~~ 76 (110)
+...|++. -.++++++|+..+. ...+..+.+++.. .+.|+++++||+|-.+.... ..+.+.+.....
T Consensus 96 ~i~~YL~~R~~L~~vvlliD~r~~~--~~~D~em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~- 169 (200)
T COG0218 96 LIEEYLEKRANLKGVVLLIDARHPP--KDLDREMIEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPP- 169 (200)
T ss_pred HHHHHHhhchhheEEEEEEECCCCC--cHHHHHHHHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCC-
Confidence 34456553 45788999987653 3333444455444 57999999999997654222 223333332111
Q ss_pred CcceEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 77 QRHWYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 77 ~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
...+ ++..|+.++.|++++...|.+.+..
T Consensus 170 ~~~~-~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 170 DDQW-VVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred ccce-EEEEecccccCHHHHHHHHHHHhhc
Confidence 1112 7788999999999999998887653
No 255
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.51 E-value=1.7e-06 Score=56.08 Aligned_cols=89 Identities=19% Similarity=0.163 Sum_probs=54.0
Q ss_pred cccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCH----HHHHhhhCCCccc--CcceEE
Q 044598 9 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AEITDKLGLHSLR--QRHWYI 82 (110)
Q Consensus 9 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~----~~~~~~~~~~~~~--~~~~~~ 82 (110)
...||.++++.++.......... ...+ ...-++|+||+|+.+.... .++...+.+.... ....++
T Consensus 167 ~~~aD~vlvv~~p~~gd~iq~~k---~gi~------E~aDIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pV 237 (332)
T PRK09435 167 AGMVDFFLLLQLPGAGDELQGIK---KGIM------ELADLIVINKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPV 237 (332)
T ss_pred HHhCCEEEEEecCCchHHHHHHH---hhhh------hhhheEEeehhcccchhHHHHHHHHHHHHHhcccccccCCCCCE
Confidence 45689999998744333332221 1122 1223899999998654321 2233333321111 122478
Q ss_pred EeeecccCCCHHHHHHHHHHHHHh
Q 044598 83 QSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 83 ~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
+.+||+++.|++++.+.+.++...
T Consensus 238 i~vSA~~g~GIdeL~~~I~~~~~~ 261 (332)
T PRK09435 238 LTCSALEGEGIDEIWQAIEDHRAA 261 (332)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999988753
No 256
>PRK12740 elongation factor G; Reviewed
Probab=98.49 E-value=2.5e-06 Score=60.03 Aligned_cols=53 Identities=15% Similarity=0.088 Sum_probs=36.5
Q ss_pred chHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC
Q 044598 3 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60 (110)
Q Consensus 3 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~ 60 (110)
..+..+++.+|++++|+|+++...... ...+.... . .++|+++|+||+|+...
T Consensus 75 ~~~~~~l~~aD~vllvvd~~~~~~~~~-~~~~~~~~-~---~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 75 GEVERALRVLDGAVVVVCAVGGVEPQT-ETVWRQAE-K---YGVPRIIFVNKMDRAGA 127 (668)
T ss_pred HHHHHHHHHhCeEEEEEeCCCCcCHHH-HHHHHHHH-H---cCCCEEEEEECCCCCCC
Confidence 456778999999999999986433322 22232222 1 46899999999998643
No 257
>PRK12736 elongation factor Tu; Reviewed
Probab=98.49 E-value=1.4e-06 Score=57.83 Aligned_cols=92 Identities=21% Similarity=0.226 Sum_probs=53.3
Q ss_pred cccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCe-EEEEeeCCCCCCCCCH-H----HHHhhhCCCcccCcceEE
Q 044598 9 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMNA-A----EITDKLGLHSLRQRHWYI 82 (110)
Q Consensus 9 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~Dl~~~~~~-~----~~~~~~~~~~~~~~~~~~ 82 (110)
...+|++++|+|+.+... ......+..+. . .++| +++++||+|+.+.... + ++...+..........++
T Consensus 96 ~~~~d~~llVvd~~~g~~-~~t~~~~~~~~-~---~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i 170 (394)
T PRK12736 96 AAQMDGAILVVAATDGPM-PQTREHILLAR-Q---VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPGDDIPV 170 (394)
T ss_pred HhhCCEEEEEEECCCCCc-hhHHHHHHHHH-H---cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCcCCccE
Confidence 457899999999875311 12222232222 1 3567 6789999998643211 1 222222111111234689
Q ss_pred EeeecccCC--------CHHHHHHHHHHHHH
Q 044598 83 QSTCATSGE--------GLYEGLDWLSNNIA 105 (110)
Q Consensus 83 ~~~Sa~~~~--------~i~~l~~~l~~~~~ 105 (110)
+++||++|. +++++++.+.+.+.
T Consensus 171 i~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 171 IRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred EEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 999999983 57788887776653
No 258
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.49 E-value=8.4e-07 Score=58.71 Aligned_cols=103 Identities=25% Similarity=0.447 Sum_probs=71.4
Q ss_pred cchHHHhcccCCEEEEEEECCCh----------hhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCC-----CC------
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDR----------DRVVEARDELHRMLNEDELRDAVLLVFANKQDLP-----NA------ 60 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~-----~~------ 60 (110)
|..|-+++.+++++|||++.++. ..+.++...+..+.....+.+.|+++++||.|+- ..
T Consensus 250 RkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~f~~Kl~~~~~l~~~ 329 (389)
T PF00503_consen 250 RKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDLFEEKLKKGPKLSKY 329 (389)
T ss_dssp GGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHHHHHHTTTSSCGGGT
T ss_pred hhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHHHHHHccCCCchHhh
Confidence 67899999999999999997642 2477778888888888777899999999999961 11
Q ss_pred ---------CCHHHHHh----hh-CCCcccC--cceEEEeeecccCCCHHHHHHHHHHHH
Q 044598 61 ---------MNAAEITD----KL-GLHSLRQ--RHWYIQSTCATSGEGLYEGLDWLSNNI 104 (110)
Q Consensus 61 ---------~~~~~~~~----~~-~~~~~~~--~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 104 (110)
...+.... .+ ....... +.+.++.++|.+..++..+|+.+.+.+
T Consensus 330 fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 330 FPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp STTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 01111111 11 1111111 566777899999999999998887653
No 259
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=98.46 E-value=1.1e-06 Score=50.75 Aligned_cols=100 Identities=7% Similarity=0.074 Sum_probs=67.3
Q ss_pred chHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCC---HHHHHhhhCCCcccCcc
Q 044598 3 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSLRQRH 79 (110)
Q Consensus 3 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~ 79 (110)
.+.+....++-+++|++|.+.+..+++...|......... ..+| ++|++|.|.--..+ ++++...-. ....-.+
T Consensus 84 n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~Nk-tAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar-~YAk~mn 160 (205)
T KOG1673|consen 84 NMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNK-TAIP-ILVGTKYDLFIDLPPELQETISRQAR-KYAKVMN 160 (205)
T ss_pred ccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCC-ccce-EEeccchHhhhcCCHHHHHHHHHHHH-HHHHHhC
Confidence 4555667889999999999999899999998887765432 2355 77899999632221 222211100 0011234
Q ss_pred eEEEeeecccCCCHHHHHHHHHHHHH
Q 044598 80 WYIQSTCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 80 ~~~~~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
.+.+.||+....|+..+|..+...+-
T Consensus 161 AsL~F~Sts~sINv~KIFK~vlAklF 186 (205)
T KOG1673|consen 161 ASLFFCSTSHSINVQKIFKIVLAKLF 186 (205)
T ss_pred CcEEEeeccccccHHHHHHHHHHHHh
Confidence 46778999999999999998876653
No 260
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.43 E-value=1.3e-06 Score=58.78 Aligned_cols=86 Identities=12% Similarity=0.142 Sum_probs=49.5
Q ss_pred HHHhcccCCEEEEEEECCChhhH-------HHHHHHHHHHhcCCCCCCC-eEEEEeeCCCCCCC-CC-------HHHHHh
Q 044598 5 WRHYFQNTQGLIFVVDSNDRDRV-------VEARDELHRMLNEDELRDA-VLLVFANKQDLPNA-MN-------AAEITD 68 (110)
Q Consensus 5 ~~~~~~~~~~~i~v~d~~~~~~~-------~~~~~~~~~~~~~~~~~~~-~~iiv~nK~Dl~~~-~~-------~~~~~~ 68 (110)
....+..+|++|+|+|+.+. .+ ......+.-.. . .++ ++++++||+|+... .. .+++..
T Consensus 102 ~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~-~---~gi~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~ 176 (447)
T PLN00043 102 MITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAF-T---LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSS 176 (447)
T ss_pred HHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHH-H---cCCCcEEEEEEcccCCchhhhHHHHHHHHHHHHH
Confidence 45567899999999999752 12 12222222111 1 355 57889999997521 11 122222
Q ss_pred hhCCCcccCcceEEEeeecccCCCHHH
Q 044598 69 KLGLHSLRQRHWYIQSTCATSGEGLYE 95 (110)
Q Consensus 69 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 95 (110)
.+....+....++++++||.+|.|+.+
T Consensus 177 ~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 177 YLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred HHHHcCCCcccceEEEEeccccccccc
Confidence 221111222346899999999999853
No 261
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.42 E-value=7.8e-07 Score=54.07 Aligned_cols=57 Identities=25% Similarity=0.303 Sum_probs=39.7
Q ss_pred CCeEEEEeeCCCCCCCCC--HHHHHhhhCCCcccCcceEEEeeecccCCCHHHHHHHHHHHH
Q 044598 45 DAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 104 (110)
Q Consensus 45 ~~~~iiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 104 (110)
..|.++++||+|+.+... ..+....+.. .....+++.+||++|.|++++++++.+..
T Consensus 148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~---~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 148 KEADLIVINKADLAEAVGFDVEKMKADAKK---INPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred hhCCEEEEEHHHccccchhhHHHHHHHHHH---hCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 467899999999965321 2222222211 12346799999999999999999998754
No 262
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.41 E-value=8.6e-07 Score=56.85 Aligned_cols=90 Identities=16% Similarity=0.159 Sum_probs=58.1
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC----CHHHHHhhhCCCcccCcceEEEeeec
Q 044598 12 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSLRQRHWYIQSTCA 87 (110)
Q Consensus 12 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa 87 (110)
.|++++|+.++++=...+..+.+..+- -..-+.++++.||+|+.... +.+++.+...= .-..+.+++++||
T Consensus 110 MDgAlLvIaANEpcPQPQT~EHl~Ale---Iigik~iiIvQNKIDlV~~E~AlE~y~qIk~FvkG--t~Ae~aPIIPiSA 184 (415)
T COG5257 110 MDGALLVIAANEPCPQPQTREHLMALE---IIGIKNIIIVQNKIDLVSRERALENYEQIKEFVKG--TVAENAPIIPISA 184 (415)
T ss_pred hcceEEEEecCCCCCCCchHHHHHHHh---hhccceEEEEecccceecHHHHHHHHHHHHHHhcc--cccCCCceeeehh
Confidence 689999999886422222233332221 01346799999999996432 23334333210 1123458999999
Q ss_pred ccCCCHHHHHHHHHHHHHh
Q 044598 88 TSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 88 ~~~~~i~~l~~~l~~~~~~ 106 (110)
..+.|++.+++.|.+.+..
T Consensus 185 ~~~~NIDal~e~i~~~Ipt 203 (415)
T COG5257 185 QHKANIDALIEAIEKYIPT 203 (415)
T ss_pred hhccCHHHHHHHHHHhCCC
Confidence 9999999999999998853
No 263
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.36 E-value=9.3e-06 Score=57.43 Aligned_cols=52 Identities=17% Similarity=0.169 Sum_probs=35.6
Q ss_pred hHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC
Q 044598 4 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60 (110)
Q Consensus 4 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~ 60 (110)
.+..+++.+|++++|+|+++...... ...+... .. .++|+++++||+|+.+.
T Consensus 91 ~~~~~l~~~D~~ilVvda~~g~~~~~-~~~~~~~-~~---~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 91 EVERSLRVLDGAVAVLDAVGGVQPQS-ETVWRQA-NR---YEVPRIAFVNKMDKTGA 142 (689)
T ss_pred HHHHHHHHhCEEEEEEeCCCCCChhH-HHHHHHH-HH---cCCCEEEEEECCCCCCC
Confidence 46778999999999999986433222 2222222 22 46899999999998643
No 264
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.35 E-value=4e-06 Score=53.53 Aligned_cols=92 Identities=17% Similarity=0.140 Sum_probs=57.5
Q ss_pred hcccCCEEEEEEECCChhhH--HHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC---------------C--HHHHHh
Q 044598 8 YFQNTQGLIFVVDSNDRDRV--VEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---------------N--AAEITD 68 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~---------------~--~~~~~~ 68 (110)
..+.||+++.|+|++++... ......+... .+.|-++|.||.|..+.. . .-++.+
T Consensus 152 a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y------s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~ 225 (379)
T KOG1423|consen 152 AAQNADCVVVVVDASATRTPLHPRVLHMLEEY------SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQE 225 (379)
T ss_pred HHhhCCEEEEEEeccCCcCccChHHHHHHHHH------hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHH
Confidence 57899999999999864321 1111122222 468899999999975432 0 112222
Q ss_pred hhCCCc-c----c----CcceEEEeeecccCCCHHHHHHHHHHHHH
Q 044598 69 KLGLHS-L----R----QRHWYIQSTCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 69 ~~~~~~-~----~----~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
.+.... . . +..-.+|.+||++|+|++++.++|..+..
T Consensus 226 ~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 226 KFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP 271 (379)
T ss_pred HhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence 221111 0 0 11225899999999999999999988764
No 265
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.34 E-value=8e-06 Score=51.57 Aligned_cols=91 Identities=15% Similarity=0.212 Sum_probs=55.6
Q ss_pred CEEEEEEECCC---hhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC-------CHHHHHhhhCC--Ccc-----
Q 044598 13 QGLIFVVDSND---RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-------NAAEITDKLGL--HSL----- 75 (110)
Q Consensus 13 ~~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~-------~~~~~~~~~~~--~~~----- 75 (110)
-+++|++|... |..|-+....--+++-. ...|+++++||+|+.+.. +.+.+.+.+.. ..+
T Consensus 149 tvv~YvvDt~rs~~p~tFMSNMlYAcSilyk---tklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~ 225 (366)
T KOG1532|consen 149 TVVVYVVDTPRSTSPTTFMSNMLYACSILYK---TKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLT 225 (366)
T ss_pred eEEEEEecCCcCCCchhHHHHHHHHHHHHHh---ccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhh
Confidence 36789999654 33343333333334322 468999999999997652 11122221110 000
Q ss_pred ---------cCcceEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 76 ---------RQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 76 ---------~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
.-+.+..+.+|+.+|.|.+++|..+.+.+..
T Consensus 226 ~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdE 265 (366)
T KOG1532|consen 226 RSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDE 265 (366)
T ss_pred hhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHH
Confidence 0134678899999999999999998877654
No 266
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=98.32 E-value=3.2e-06 Score=40.76 Aligned_cols=43 Identities=16% Similarity=0.352 Sum_probs=24.1
Q ss_pred CCEEEEEEECCChh--hHHHHHHHHHHHhcCCCCCCCeEEEEeeCCC
Q 044598 12 TQGLIFVVDSNDRD--RVVEARDELHRMLNEDELRDAVLLVFANKQD 56 (110)
Q Consensus 12 ~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D 56 (110)
.++++|++|+++.- +.++-...+.++... ..++|+++|.||+|
T Consensus 14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~--F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPL--FPNKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH--TTTS-EEEEE--TT
T ss_pred cceEEEEEcCCCCCCCCHHHHHHHHHHHHHH--cCCCCEEEEEeccC
Confidence 57899999998642 344444444444322 35899999999998
No 267
>CHL00071 tufA elongation factor Tu
Probab=98.32 E-value=3.2e-06 Score=56.34 Aligned_cols=80 Identities=19% Similarity=0.175 Sum_probs=45.3
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCe-EEEEeeCCCCCCCCC-HH----HHHhhhCCCcccCcceE
Q 044598 8 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN-AA----EITDKLGLHSLRQRHWY 81 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~Dl~~~~~-~~----~~~~~~~~~~~~~~~~~ 81 (110)
-+..+|++++|+|+..... ......+..+. . .++| ++++.||+|+.+... .+ ++...+..........+
T Consensus 95 ~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~-~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 169 (409)
T CHL00071 95 GAAQMDGAILVVSAADGPM-PQTKEHILLAK-Q---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFPGDDIP 169 (409)
T ss_pred HHHhCCEEEEEEECCCCCc-HHHHHHHHHHH-H---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCCCcce
Confidence 4678999999999875321 22222222221 1 3567 778999999864321 11 22222211111122468
Q ss_pred EEeeecccCCC
Q 044598 82 IQSTCATSGEG 92 (110)
Q Consensus 82 ~~~~Sa~~~~~ 92 (110)
++++||.+|.+
T Consensus 170 ii~~Sa~~g~n 180 (409)
T CHL00071 170 IVSGSALLALE 180 (409)
T ss_pred EEEcchhhccc
Confidence 99999998864
No 268
>PRK12735 elongation factor Tu; Reviewed
Probab=98.31 E-value=7.5e-06 Score=54.42 Aligned_cols=92 Identities=20% Similarity=0.187 Sum_probs=52.8
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEE-EEeeCCCCCCCCC-HH----HHHhhhCCCcccCcceE
Q 044598 8 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL-VFANKQDLPNAMN-AA----EITDKLGLHSLRQRHWY 81 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-iv~nK~Dl~~~~~-~~----~~~~~~~~~~~~~~~~~ 81 (110)
-+..+|++++|+|+.+... .+....+..+. . .++|.+ +++||+|+.+... .+ ++...+..........+
T Consensus 95 ~~~~aD~~llVvda~~g~~-~qt~e~l~~~~-~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~~~~~ 169 (396)
T PRK12735 95 GAAQMDGAILVVSAADGPM-PQTREHILLAR-Q---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTP 169 (396)
T ss_pred hhccCCEEEEEEECCCCCc-hhHHHHHHHHH-H---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCcCcee
Confidence 3567899999999976321 22222332221 1 357755 5799999864221 11 22222211111112468
Q ss_pred EEeeecccCC----------CHHHHHHHHHHHH
Q 044598 82 IQSTCATSGE----------GLYEGLDWLSNNI 104 (110)
Q Consensus 82 ~~~~Sa~~~~----------~i~~l~~~l~~~~ 104 (110)
++++||.+|. ++..+++.+...+
T Consensus 170 ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 170 IIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred EEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 8999999984 6778888777654
No 269
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.31 E-value=5.9e-06 Score=54.85 Aligned_cols=78 Identities=19% Similarity=0.181 Sum_probs=42.4
Q ss_pred cccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeE-EEEeeCCCCCCCCC-H----HHHHhhhCCCcccCcceEE
Q 044598 9 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVL-LVFANKQDLPNAMN-A----AEITDKLGLHSLRQRHWYI 82 (110)
Q Consensus 9 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-iiv~nK~Dl~~~~~-~----~~~~~~~~~~~~~~~~~~~ 82 (110)
...+|++++|+|+.+... .+....+..+.. .+.|. ++++||+|+.+... . +++...+.........+++
T Consensus 96 ~~~~D~~ilVvda~~g~~-~qt~e~l~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~~~~~i 170 (394)
T TIGR00485 96 AAQMDGAILVVSATDGPM-PQTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFPGDDTPI 170 (394)
T ss_pred HhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCCccCccE
Confidence 346799999999986321 222222322221 35665 46899999864321 1 1222222211111223689
Q ss_pred EeeecccCC
Q 044598 83 QSTCATSGE 91 (110)
Q Consensus 83 ~~~Sa~~~~ 91 (110)
+++||.+|.
T Consensus 171 i~vSa~~g~ 179 (394)
T TIGR00485 171 IRGSALKAL 179 (394)
T ss_pred EECcccccc
Confidence 999999875
No 270
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.31 E-value=1e-05 Score=55.55 Aligned_cols=50 Identities=18% Similarity=0.244 Sum_probs=33.3
Q ss_pred HHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCC
Q 044598 5 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 59 (110)
Q Consensus 5 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~ 59 (110)
...+++.+|++|+|+|+++... .....++. .... .++|+++++||+|+..
T Consensus 97 ~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~-~~~~---~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 97 TYRTLTAVDNCLMVIDAAKGVE-TRTRKLME-VTRL---RDTPIFTFMNKLDRDI 146 (527)
T ss_pred HHHHHHhCCEEEEEEECCCCCC-HHHHHHHH-HHHh---cCCCEEEEEECccccC
Confidence 3456889999999999976311 11222232 2222 4689999999999853
No 271
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=2.1e-06 Score=60.31 Aligned_cols=93 Identities=24% Similarity=0.225 Sum_probs=57.9
Q ss_pred hcccCCEEEEEEECCC---hhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC------C------------HHHH
Q 044598 8 YFQNTQGLIFVVDSND---RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM------N------------AAEI 66 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~------~------------~~~~ 66 (110)
.-.-||.+|+|+|... +++.+.+ .++.. ++.|+|+++||+|..-.. + ..++
T Consensus 560 gsslC~~aIlvvdImhGlepqtiESi-----~lLR~---rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~EF 631 (1064)
T KOG1144|consen 560 GSSLCDLAILVVDIMHGLEPQTIESI-----NLLRM---RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNEF 631 (1064)
T ss_pred cccccceEEEEeehhccCCcchhHHH-----HHHHh---cCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHHH
Confidence 3456999999999864 3333332 12222 689999999999973210 0 0111
Q ss_pred Hh-------hh---CCCc---cc----CcceEEEeeecccCCCHHHHHHHHHHHHHhhc
Q 044598 67 TD-------KL---GLHS---LR----QRHWYIQSTCATSGEGLYEGLDWLSNNIANKV 108 (110)
Q Consensus 67 ~~-------~~---~~~~---~~----~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 108 (110)
.. .| ++.. +. ...+.++++||.+|+|+.+++.+|.+.....+
T Consensus 632 ~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m 690 (1064)
T KOG1144|consen 632 KERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTM 690 (1064)
T ss_pred HHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHH
Confidence 10 11 1111 11 23467899999999999999999988765543
No 272
>PRK00049 elongation factor Tu; Reviewed
Probab=98.28 E-value=5.7e-06 Score=54.99 Aligned_cols=92 Identities=20% Similarity=0.194 Sum_probs=52.7
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEE-EEeeCCCCCCCCC-H----HHHHhhhCCCcccCcceE
Q 044598 8 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL-VFANKQDLPNAMN-A----AEITDKLGLHSLRQRHWY 81 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-iv~nK~Dl~~~~~-~----~~~~~~~~~~~~~~~~~~ 81 (110)
-+..+|++++|+|+.+... ......+..+ .. .+.|.+ ++.||+|+.+... . .++...+....+.....+
T Consensus 95 ~~~~aD~~llVVDa~~g~~-~qt~~~~~~~-~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 169 (396)
T PRK00049 95 GAAQMDGAILVVSAADGPM-PQTREHILLA-RQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTP 169 (396)
T ss_pred hhccCCEEEEEEECCCCCc-hHHHHHHHHH-HH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCccCCc
Confidence 4678999999999975322 2222223222 21 357875 5899999864211 1 122222211111123468
Q ss_pred EEeeecccCC----------CHHHHHHHHHHHH
Q 044598 82 IQSTCATSGE----------GLYEGLDWLSNNI 104 (110)
Q Consensus 82 ~~~~Sa~~~~----------~i~~l~~~l~~~~ 104 (110)
++++||.++. ++..+++.|...+
T Consensus 170 iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 170 IIRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred EEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 8999999875 4667777776644
No 273
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.27 E-value=3.8e-06 Score=53.12 Aligned_cols=53 Identities=15% Similarity=0.080 Sum_probs=36.1
Q ss_pred chHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC
Q 044598 3 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60 (110)
Q Consensus 3 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~ 60 (110)
..+..+++.+|++++|+|+.+..... ....+.... . .++|+++++||+|+.+.
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~-~---~~~p~ivviNK~D~~~a 131 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQAD-R---YNVPRIAFVNKMDRTGA 131 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHH-H---cCCCEEEEEECCCCCCC
Confidence 45677899999999999997632211 122232221 1 46899999999998754
No 274
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.27 E-value=5.6e-06 Score=55.79 Aligned_cols=85 Identities=15% Similarity=0.115 Sum_probs=48.2
Q ss_pred HhcccCCEEEEEEECCChhh---H---HHHHHHHHHHhcCCCCCCCe-EEEEeeCCCCCCC----CCH----HHHHhhhC
Q 044598 7 HYFQNTQGLIFVVDSNDRDR---V---VEARDELHRMLNEDELRDAV-LLVFANKQDLPNA----MNA----AEITDKLG 71 (110)
Q Consensus 7 ~~~~~~~~~i~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~~-~iiv~nK~Dl~~~----~~~----~~~~~~~~ 71 (110)
.-+..+|++++|+|+.+... + .+..+.+.-+. . .++| ++++.||+|.... ... +++...+.
T Consensus 104 ~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~-~---~gi~~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~ 179 (446)
T PTZ00141 104 TGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAF-T---LGVKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLK 179 (446)
T ss_pred HhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHH-H---cCCCeEEEEEEccccccchhhHHHHHHHHHHHHHHHH
Confidence 34678999999999875310 0 12222222221 1 3555 6799999995321 111 22222222
Q ss_pred CCcccCcceEEEeeecccCCCHHH
Q 044598 72 LHSLRQRHWYIQSTCATSGEGLYE 95 (110)
Q Consensus 72 ~~~~~~~~~~~~~~Sa~~~~~i~~ 95 (110)
...+....++++++||.+|.|+.+
T Consensus 180 ~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 180 KVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hcCCCcccceEEEeecccCCCccc
Confidence 111222357899999999999864
No 275
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.26 E-value=9.8e-06 Score=51.98 Aligned_cols=62 Identities=19% Similarity=0.113 Sum_probs=39.4
Q ss_pred CCCeEEEEeeCCCCCCCCCHHHHHhh----hC-C-CcccCcceEEEeeecccCCCHHHHHHHHHHHHH
Q 044598 44 RDAVLLVFANKQDLPNAMNAAEITDK----LG-L-HSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 44 ~~~~~iiv~nK~Dl~~~~~~~~~~~~----~~-~-~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
.++|.++++||+|+.+.......... +. + ........+++.+||++++|++++++++.+...
T Consensus 171 ~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 171 MEIADIYVVNKADGEGATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred hhhccEEEEEcccccchhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 35778999999998754322111111 11 1 000112235899999999999999999988643
No 276
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.24 E-value=2.1e-06 Score=57.86 Aligned_cols=89 Identities=12% Similarity=0.146 Sum_probs=54.1
Q ss_pred EEEEEEECCCh--hhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEEeeecccCC
Q 044598 14 GLIFVVDSNDR--DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGE 91 (110)
Q Consensus 14 ~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 91 (110)
+|+|+.|.++. .+.++-..++.++. +-+.++|+|+|+||+|+-...+..+-.+.+-........++++.+|+.+.+
T Consensus 250 aVLYfmDLSe~CGySva~QvkLfhsIK--pLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~~ee 327 (620)
T KOG1490|consen 250 AVLYFMDLSEMCGYSVAAQVKLYHSIK--PLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSCVQEE 327 (620)
T ss_pred hheeeeechhhhCCCHHHHHHHHHHhH--HHhcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEecccchh
Confidence 68999998753 34444444444442 124689999999999986554322211111000011234689999999999
Q ss_pred CHHHHHHHHHHHH
Q 044598 92 GLYEGLDWLSNNI 104 (110)
Q Consensus 92 ~i~~l~~~l~~~~ 104 (110)
|+.++.....+.+
T Consensus 328 gVm~Vrt~ACe~L 340 (620)
T KOG1490|consen 328 GVMDVRTTACEAL 340 (620)
T ss_pred ceeeHHHHHHHHH
Confidence 9988776554444
No 277
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.23 E-value=7.6e-06 Score=54.55 Aligned_cols=84 Identities=15% Similarity=0.071 Sum_probs=46.5
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCC--HHHHHhhhC--CCcccCcceEEE
Q 044598 8 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLG--LHSLRQRHWYIQ 83 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~--~~~~~~~~~--~~~~~~~~~~~~ 83 (110)
-+..+|++++|+|+...... +....+.-. .. ...+++++++||+|+.+... .+++...+. +........+++
T Consensus 100 ~~~~aD~allVVda~~G~~~-qt~~~~~~~-~~--~~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii 175 (406)
T TIGR02034 100 GASTADLAVLLVDARKGVLE-QTRRHSYIA-SL--LGIRHVVLAVNKMDLVDYDEEVFENIKKDYLAFAEQLGFRDVTFI 175 (406)
T ss_pred HHhhCCEEEEEEECCCCCcc-ccHHHHHHH-HH--cCCCcEEEEEEecccccchHHHHHHHHHHHHHHHHHcCCCCccEE
Confidence 46789999999998753211 111111111 11 12346889999999864321 111121110 000111245789
Q ss_pred eeecccCCCHHH
Q 044598 84 STCATSGEGLYE 95 (110)
Q Consensus 84 ~~Sa~~~~~i~~ 95 (110)
++||++|.|+++
T Consensus 176 piSA~~g~ni~~ 187 (406)
T TIGR02034 176 PLSALKGDNVVS 187 (406)
T ss_pred EeecccCCCCcc
Confidence 999999999885
No 278
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.22 E-value=1.1e-06 Score=59.90 Aligned_cols=93 Identities=12% Similarity=0.107 Sum_probs=63.1
Q ss_pred HHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCC--CCCCCeEEEEeeCCCCCCCCCH--HH----HHhhhCCCcccC
Q 044598 6 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNED--ELRDAVLLVFANKQDLPNAMNA--AE----ITDKLGLHSLRQ 77 (110)
Q Consensus 6 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~iiv~nK~Dl~~~~~~--~~----~~~~~~~~~~~~ 77 (110)
.+=+++||++.++++.+++.+++.....|....... +..++|+|+|+||+|+...... +. +...+..
T Consensus 74 ~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~E----- 148 (625)
T KOG1707|consen 74 RKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAE----- 148 (625)
T ss_pred HHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHH-----
Confidence 455889999999999999888887765454444332 2246999999999998544322 11 1111111
Q ss_pred cceEEEeeecccCCCHHHHHHHHHHHH
Q 044598 78 RHWYIQSTCATSGEGLYEGLDWLSNNI 104 (110)
Q Consensus 78 ~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 104 (110)
---+++|||++..++.++|....+.+
T Consensus 149 -iEtciecSA~~~~n~~e~fYyaqKaV 174 (625)
T KOG1707|consen 149 -IETCIECSALTLANVSELFYYAQKAV 174 (625)
T ss_pred -HHHHHhhhhhhhhhhHhhhhhhhhee
Confidence 11366899999999999997766554
No 279
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.19 E-value=1.1e-05 Score=48.73 Aligned_cols=92 Identities=10% Similarity=0.056 Sum_probs=54.7
Q ss_pred cccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC---------CHHHHHhhhC------CC
Q 044598 9 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---------NAAEITDKLG------LH 73 (110)
Q Consensus 9 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~---------~~~~~~~~~~------~~ 73 (110)
+.++|+++++.|.. +.+....+...+.. .+.|+++|+||+|+.... ..+++.+.+. +.
T Consensus 78 ~~~~d~~l~v~~~~----~~~~d~~~~~~l~~---~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~ 150 (197)
T cd04104 78 FSEYDFFIIISSTR----FSSNDVKLAKAIQC---MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQ 150 (197)
T ss_pred ccCcCEEEEEeCCC----CCHHHHHHHHHHHH---hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHH
Confidence 56789999886532 33333333333333 358999999999984211 1112111110 00
Q ss_pred cccCcceEEEeeecc--cCCCHHHHHHHHHHHHHhh
Q 044598 74 SLRQRHWYIQSTCAT--SGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 74 ~~~~~~~~~~~~Sa~--~~~~i~~l~~~l~~~~~~~ 107 (110)
.......+++.+|+. .+.|+..+.+.+...++..
T Consensus 151 ~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 151 EAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred HcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence 001123478899998 6789999999999988754
No 280
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.17 E-value=9.3e-06 Score=51.30 Aligned_cols=53 Identities=15% Similarity=0.166 Sum_probs=35.3
Q ss_pred hHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC
Q 044598 4 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 61 (110)
Q Consensus 4 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~ 61 (110)
.+..+++.+|++++|+|+++.... ....++ ..... .++|+++++||+|+.+..
T Consensus 87 ~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~-~~~~~---~~~P~iivvNK~D~~~a~ 139 (267)
T cd04169 87 DTYRTLTAVDSAVMVIDAAKGVEP-QTRKLF-EVCRL---RGIPIITFINKLDREGRD 139 (267)
T ss_pred HHHHHHHHCCEEEEEEECCCCccH-HHHHHH-HHHHh---cCCCEEEEEECCccCCCC
Confidence 345678899999999999763221 112222 22222 478999999999986653
No 281
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.16 E-value=7.3e-06 Score=52.22 Aligned_cols=89 Identities=27% Similarity=0.250 Sum_probs=57.7
Q ss_pred cccCCEEEEEEECCChhh-HHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEEeeec
Q 044598 9 FQNTQGLIFVVDSNDRDR-VVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 87 (110)
Q Consensus 9 ~~~~~~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 87 (110)
..+.|-+++|+.+.+|+- ..- +.+++...+..+...+|++||+|+.+...... .+... .+...+++++.+|+
T Consensus 77 v~n~d~~iiIvs~~~P~~~~~~----ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~-~~~~~--~y~~~gy~v~~~s~ 149 (301)
T COG1162 77 VANNDQAIIVVSLVDPDFNTNL----LDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAV-KELLR--EYEDIGYPVLFVSA 149 (301)
T ss_pred ccccceEEEEEeccCCCCCHHH----HHHHHHHHHHcCCcEEEEEEccccCcchHHHH-HHHHH--HHHhCCeeEEEecC
Confidence 445778888888877642 222 22222222235777788899999976654332 11111 13456789999999
Q ss_pred ccCCCHHHHHHHHHHHH
Q 044598 88 TSGEGLYEGLDWLSNNI 104 (110)
Q Consensus 88 ~~~~~i~~l~~~l~~~~ 104 (110)
+++.|++++...+...+
T Consensus 150 ~~~~~~~~l~~~l~~~~ 166 (301)
T COG1162 150 KNGDGLEELAELLAGKI 166 (301)
T ss_pred cCcccHHHHHHHhcCCe
Confidence 99999999988876554
No 282
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.16 E-value=9.4e-06 Score=45.39 Aligned_cols=83 Identities=19% Similarity=0.231 Sum_probs=55.9
Q ss_pred cccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEEeeecc
Q 044598 9 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCAT 88 (110)
Q Consensus 9 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 88 (110)
.+++|++++|-.+.++.+.-.. -+. ....+|+|-+++|.|+.+..+.+..+.++.. .. .-++|++|+.
T Consensus 62 ~~dadvi~~v~~and~~s~f~p--~f~------~~~~k~vIgvVTK~DLaed~dI~~~~~~L~e---aG-a~~IF~~s~~ 129 (148)
T COG4917 62 LQDADVIIYVHAANDPESRFPP--GFL------DIGVKKVIGVVTKADLAEDADISLVKRWLRE---AG-AEPIFETSAV 129 (148)
T ss_pred hhccceeeeeecccCccccCCc--ccc------cccccceEEEEecccccchHhHHHHHHHHHH---cC-CcceEEEecc
Confidence 4688999999988876542110 011 1235679999999999865444444444421 11 3378999999
Q ss_pred cCCCHHHHHHHHHHH
Q 044598 89 SGEGLYEGLDWLSNN 103 (110)
Q Consensus 89 ~~~~i~~l~~~l~~~ 103 (110)
+++|+++++..|...
T Consensus 130 d~~gv~~l~~~L~~~ 144 (148)
T COG4917 130 DNQGVEELVDYLASL 144 (148)
T ss_pred CcccHHHHHHHHHhh
Confidence 999999999887653
No 283
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.12 E-value=1.2e-05 Score=49.54 Aligned_cols=51 Identities=20% Similarity=0.152 Sum_probs=35.3
Q ss_pred chHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCC
Q 044598 3 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 58 (110)
Q Consensus 3 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 58 (110)
.....+++.+|++++|+|+++...... ...+..... .+.|+++++||+|+.
T Consensus 88 ~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~----~~~p~ilviNKiD~~ 138 (222)
T cd01885 88 SEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK----ERVKPVLVINKIDRL 138 (222)
T ss_pred HHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCcc
Confidence 345678999999999999986433322 223333222 357999999999975
No 284
>PRK12739 elongation factor G; Reviewed
Probab=98.11 E-value=3.2e-05 Score=54.79 Aligned_cols=52 Identities=17% Similarity=0.096 Sum_probs=34.9
Q ss_pred hHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC
Q 044598 4 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60 (110)
Q Consensus 4 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~ 60 (110)
.+...++.+|++++|+|+.+.....+ ...+.... . .++|.++++||+|+.+.
T Consensus 89 e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~-~---~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 89 EVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQAD-K---YGVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHH-H---cCCCEEEEEECCCCCCC
Confidence 45667899999999999876422211 22222222 1 46899999999998643
No 285
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.11 E-value=6.5e-06 Score=55.86 Aligned_cols=83 Identities=17% Similarity=0.121 Sum_probs=46.8
Q ss_pred cccCCEEEEEEECCChhhHHHHH-HHHHHHhcCCCCCCCeEEEEeeCCCCCCCCC--HHHHHhhhC--CCccc-CcceEE
Q 044598 9 FQNTQGLIFVVDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLG--LHSLR-QRHWYI 82 (110)
Q Consensus 9 ~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~--~~~~~~~~~--~~~~~-~~~~~~ 82 (110)
+..+|++++|+|+.+........ ..+...+ ..+|+++++||+|+.+... ..++...+. +.... ....++
T Consensus 128 l~~aD~allVVDa~~G~~~qt~~~~~l~~~l-----g~~~iIvvvNKiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~i 202 (474)
T PRK05124 128 ASTCDLAILLIDARKGVLDQTRRHSFIATLL-----GIKHLVVAVNKMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRF 202 (474)
T ss_pred HhhCCEEEEEEECCCCccccchHHHHHHHHh-----CCCceEEEEEeeccccchhHHHHHHHHHHHHHHHhcCCCCCceE
Confidence 58899999999987531110000 1111111 2357899999999864221 112222110 00011 124689
Q ss_pred EeeecccCCCHHHH
Q 044598 83 QSTCATSGEGLYEG 96 (110)
Q Consensus 83 ~~~Sa~~~~~i~~l 96 (110)
+++||++|.|++++
T Consensus 203 ipvSA~~g~ni~~~ 216 (474)
T PRK05124 203 VPLSALEGDNVVSQ 216 (474)
T ss_pred EEEEeecCCCcccc
Confidence 99999999999764
No 286
>PLN03127 Elongation factor Tu; Provisional
Probab=98.09 E-value=2.4e-05 Score=52.79 Aligned_cols=92 Identities=20% Similarity=0.248 Sum_probs=50.4
Q ss_pred cccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCe-EEEEeeCCCCCCCCC-HH----HHHhhhCCCcccCcceEE
Q 044598 9 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN-AA----EITDKLGLHSLRQRHWYI 82 (110)
Q Consensus 9 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~Dl~~~~~-~~----~~~~~~~~~~~~~~~~~~ 82 (110)
...+|++++|+|+.+... .+....+..+ .. .++| ++++.||+|+.+... .+ ++...+....+.....++
T Consensus 145 ~~~aD~allVVda~~g~~-~qt~e~l~~~-~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~~~~vpi 219 (447)
T PLN03127 145 AAQMDGGILVVSAPDGPM-PQTKEHILLA-RQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFPGDEIPI 219 (447)
T ss_pred HhhCCEEEEEEECCCCCc-hhHHHHHHHH-HH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCCCCcceE
Confidence 456999999999875321 1222222222 21 3578 578899999864221 11 111211110111234677
Q ss_pred Eeeecc---cCCC-------HHHHHHHHHHHHH
Q 044598 83 QSTCAT---SGEG-------LYEGLDWLSNNIA 105 (110)
Q Consensus 83 ~~~Sa~---~~~~-------i~~l~~~l~~~~~ 105 (110)
+++||. +|.| +..+++.+.+.+.
T Consensus 220 ip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 220 IRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred EEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 888775 4555 6778887776653
No 287
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.04 E-value=7.7e-05 Score=48.12 Aligned_cols=50 Identities=22% Similarity=0.140 Sum_probs=36.5
Q ss_pred CCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEEeeecccCCCHHHHHHHHHHHH
Q 044598 45 DAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 104 (110)
Q Consensus 45 ~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 104 (110)
.+|.+.|.||.|+.+....+.+... ...+.+||+++.|++++.+.|.+.+
T Consensus 239 Y~p~l~v~NKiD~~~~e~~~~l~~~----------~~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 239 YKPALYVVNKIDLPGLEELERLARK----------PNSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred eeeeEEEEecccccCHHHHHHHHhc----------cceEEEecccCCCHHHHHHHHHHhh
Confidence 3589999999998653222222211 1567899999999999999998876
No 288
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.00 E-value=9.6e-06 Score=54.82 Aligned_cols=79 Identities=18% Similarity=0.254 Sum_probs=51.3
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceE
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWY 81 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 81 (110)
|.+|+ .++.+|+++.++|+.+|--+.. .-+.....+.+ ..+..++++||.||..........+++. ...++
T Consensus 166 RQLWR-VlErSDivvqIVDARnPllfr~--~dLe~Yvke~d-~~K~~~LLvNKaDLl~~~qr~aWa~YF~-----~~ni~ 236 (562)
T KOG1424|consen 166 RQLWR-VLERSDIVVQIVDARNPLLFRS--PDLEDYVKEVD-PSKANVLLVNKADLLPPEQRVAWAEYFR-----QNNIP 236 (562)
T ss_pred HHHHH-HHhhcceEEEEeecCCccccCC--hhHHHHHhccc-cccceEEEEehhhcCCHHHHHHHHHHHH-----hcCce
Confidence 45777 5899999999999988643321 12233333322 4577899999999976654444555543 23467
Q ss_pred EEeeeccc
Q 044598 82 IQSTCATS 89 (110)
Q Consensus 82 ~~~~Sa~~ 89 (110)
++.-||..
T Consensus 237 ~vf~SA~~ 244 (562)
T KOG1424|consen 237 VVFFSALA 244 (562)
T ss_pred EEEEeccc
Confidence 77777765
No 289
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.00 E-value=1.5e-05 Score=55.84 Aligned_cols=84 Identities=17% Similarity=0.120 Sum_probs=45.9
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCC--HHHHHhhhC-C-CcccCcceEEE
Q 044598 8 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLG-L-HSLRQRHWYIQ 83 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~--~~~~~~~~~-~-~~~~~~~~~~~ 83 (110)
-+..+|++++|+|+..... .+....+. +... ...+++++++||+|+.+... .+++...+. + ........+++
T Consensus 124 ~~~~aD~~llVvda~~g~~-~~t~e~~~-~~~~--~~~~~iivvvNK~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~ii 199 (632)
T PRK05506 124 GASTADLAIILVDARKGVL-TQTRRHSF-IASL--LGIRHVVLAVNKMDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFI 199 (632)
T ss_pred HHHhCCEEEEEEECCCCcc-ccCHHHHH-HHHH--hCCCeEEEEEEecccccchhHHHHHHHHHHHHHHHHcCCCCccEE
Confidence 4678999999999865321 11111111 1111 12367899999999864211 111211110 0 00111234688
Q ss_pred eeecccCCCHHH
Q 044598 84 STCATSGEGLYE 95 (110)
Q Consensus 84 ~~Sa~~~~~i~~ 95 (110)
++||++|.|+.+
T Consensus 200 piSA~~g~ni~~ 211 (632)
T PRK05506 200 PISALKGDNVVT 211 (632)
T ss_pred EEecccCCCccc
Confidence 999999999874
No 290
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=97.99 E-value=3.8e-05 Score=51.76 Aligned_cols=94 Identities=18% Similarity=0.287 Sum_probs=61.7
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhh------CCCcccCcceE
Q 044598 8 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKL------GLHSLRQRHWY 81 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~------~~~~~~~~~~~ 81 (110)
.+.=.|++++++|+.+- ...+.+.-+.+.++ .+.+.|+|.||+|.+.+.+.+-+.+.+ +... ....++
T Consensus 88 vl~MVDgvlLlVDA~EG-pMPQTrFVlkKAl~----~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~d-eQLdFP 161 (603)
T COG1217 88 VLSMVDGVLLLVDASEG-PMPQTRFVLKKALA----LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATD-EQLDFP 161 (603)
T ss_pred hhhhcceEEEEEEcccC-CCCchhhhHHHHHH----cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCCh-hhCCCc
Confidence 45567999999999862 23344444555554 356678899999998877544333322 1111 134568
Q ss_pred EEeeecccC----------CCHHHHHHHHHHHHHhh
Q 044598 82 IQSTCATSG----------EGLYEGLDWLSNNIANK 107 (110)
Q Consensus 82 ~~~~Sa~~~----------~~i~~l~~~l~~~~~~~ 107 (110)
+++.||+.| .+...+|+.|.++++.-
T Consensus 162 ivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P 197 (603)
T COG1217 162 IVYASARNGTASLDPEDEADDMAPLFETILDHVPAP 197 (603)
T ss_pred EEEeeccCceeccCccccccchhHHHHHHHHhCCCC
Confidence 889998877 35778888888887643
No 291
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.95 E-value=1.3e-05 Score=51.02 Aligned_cols=56 Identities=29% Similarity=0.301 Sum_probs=39.0
Q ss_pred CeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCcceEEEeeecccCCCHHHHHHHHHHHH
Q 044598 46 AVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 104 (110)
Q Consensus 46 ~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 104 (110)
..-++|.||+|+.+.. ..+.+...+. ..+...+++++||++|+|++++.+||.+..
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr---~lnp~a~I~~vSA~tGeGld~L~~~L~~~~ 288 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAR---EVNPEIEIILISATSGEGMDQWLNWLETQR 288 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHH---hhCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4569999999996532 1222222221 113456899999999999999999998753
No 292
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=97.95 E-value=3.4e-05 Score=47.08 Aligned_cols=51 Identities=14% Similarity=0.128 Sum_probs=35.2
Q ss_pred chHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCC
Q 044598 3 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 58 (110)
Q Consensus 3 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 58 (110)
..+..++..+|++++|+|+++..+... ..++..... .+.|+++|+||+|+.
T Consensus 86 ~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~ 136 (213)
T cd04167 86 DEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRL 136 (213)
T ss_pred HHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccC
Confidence 456678899999999999976543322 222332221 358999999999974
No 293
>PLN03126 Elongation factor Tu; Provisional
Probab=97.88 E-value=8.5e-05 Score=50.61 Aligned_cols=78 Identities=21% Similarity=0.199 Sum_probs=44.3
Q ss_pred cccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCe-EEEEeeCCCCCCCCC-HH----HHHhhhCCCcccCcceEE
Q 044598 9 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN-AA----EITDKLGLHSLRQRHWYI 82 (110)
Q Consensus 9 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~Dl~~~~~-~~----~~~~~~~~~~~~~~~~~~ 82 (110)
+..+|++++|+|+.+... ....+++.... . .++| +++++||+|+.+... .+ ++...+....+.....++
T Consensus 165 ~~~aD~ailVVda~~G~~-~qt~e~~~~~~-~---~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ 239 (478)
T PLN03126 165 AAQMDGAILVVSGADGPM-PQTKEHILLAK-Q---VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDDIPI 239 (478)
T ss_pred HhhCCEEEEEEECCCCCc-HHHHHHHHHHH-H---cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCcCcceE
Confidence 567899999999875322 22233333222 1 3567 778999999864221 11 222222111112235688
Q ss_pred EeeecccCC
Q 044598 83 QSTCATSGE 91 (110)
Q Consensus 83 ~~~Sa~~~~ 91 (110)
+++||.+|.
T Consensus 240 vp~Sa~~g~ 248 (478)
T PLN03126 240 ISGSALLAL 248 (478)
T ss_pred EEEEccccc
Confidence 999998874
No 294
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.87 E-value=6.5e-05 Score=49.75 Aligned_cols=81 Identities=22% Similarity=0.265 Sum_probs=48.0
Q ss_pred cccCCEEEEEEECCChh------hHHHHHH--HHHHHhcCCCCCCCeEEEEeeCCCCCCCCCH---HHHHhhh----CCC
Q 044598 9 FQNTQGLIFVVDSNDRD------RVVEARD--ELHRMLNEDELRDAVLLVFANKQDLPNAMNA---AEITDKL----GLH 73 (110)
Q Consensus 9 ~~~~~~~i~v~d~~~~~------~~~~~~~--~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~---~~~~~~~----~~~ 73 (110)
..+||++|+|+|+...+ .-.+.++ .+...+ .-..++++.||+|+.+ .+. +++.... ...
T Consensus 106 asqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl-----Gi~~lIVavNKMD~v~-wde~rf~ei~~~v~~l~k~~ 179 (428)
T COG5256 106 ASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL-----GIKQLIVAVNKMDLVS-WDEERFEEIVSEVSKLLKMV 179 (428)
T ss_pred hhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc-----CCceEEEEEEcccccc-cCHHHHHHHHHHHHHHHHHc
Confidence 45799999999998642 0111111 222221 2356999999999875 222 2222211 111
Q ss_pred cccCcceEEEeeecccCCCHHH
Q 044598 74 SLRQRHWYIQSTCATSGEGLYE 95 (110)
Q Consensus 74 ~~~~~~~~~~~~Sa~~~~~i~~ 95 (110)
.+.....+++++||.+|.|+.+
T Consensus 180 G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 180 GYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred CCCccCCeEEecccccCCcccc
Confidence 1233457899999999999764
No 295
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=97.86 E-value=6.1e-05 Score=50.87 Aligned_cols=99 Identities=15% Similarity=0.154 Sum_probs=55.0
Q ss_pred HHhcccCCEEEEEEECCC--hhhHHHHHHHHHHHhcC-----CCCCCCeEEEEeeCCCCCCCCCHHHH--HhhhCCCccc
Q 044598 6 RHYFQNTQGLIFVVDSND--RDRVVEARDELHRMLNE-----DELRDAVLLVFANKQDLPNAMNAAEI--TDKLGLHSLR 76 (110)
Q Consensus 6 ~~~~~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~~-----~~~~~~~~iiv~nK~Dl~~~~~~~~~--~~~~~~~~~~ 76 (110)
+..++.||++++|+|+.. .++-......+...-.. ......|++++.||.|+....+.-.. ..+... ..
T Consensus 343 ~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~--~~ 420 (531)
T KOG1191|consen 343 RKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA--EG 420 (531)
T ss_pred HHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccc--cc
Confidence 345789999999999932 21111111112111000 11124789999999998655221110 000000 01
Q ss_pred CcceE-EEeeecccCCCHHHHHHHHHHHHHh
Q 044598 77 QRHWY-IQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 77 ~~~~~-~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
....+ +.++|+++++|++.+...+...+..
T Consensus 421 ~~~~~i~~~vs~~tkeg~~~L~~all~~~~~ 451 (531)
T KOG1191|consen 421 RSVFPIVVEVSCTTKEGCERLSTALLNIVER 451 (531)
T ss_pred CcccceEEEeeechhhhHHHHHHHHHHHHHH
Confidence 11223 3459999999999999998887654
No 296
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=97.85 E-value=2e-05 Score=43.57 Aligned_cols=77 Identities=16% Similarity=0.099 Sum_probs=48.8
Q ss_pred hHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEE
Q 044598 4 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQ 83 (110)
Q Consensus 4 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (110)
+...+++.++.++.|++.+...++... |...+.... ..+.|.++++||.|+...... .... ...+.
T Consensus 39 ~~~~~~~s~~~~~~v~~~~~~~s~~~~--~~~~i~~~~-k~dl~~~~~~nk~dl~~~~~~---~~~~--------~~~~~ 104 (124)
T smart00010 39 YDPTSYESFDVVLQCWRVDDRDSADNK--NVPEVLVGN-KSDLPILVGGNRDVLEEERQV---ATEE--------GLEFA 104 (124)
T ss_pred ccccccCCCCEEEEEEEccCHHHHHHH--hHHHHHhcC-CCCCcEEEEeechhhHhhCcC---CHHH--------HHHHH
Confidence 456678899999999999887766543 444333322 246789999999997332110 0000 11234
Q ss_pred eeecccCCCHH
Q 044598 84 STCATSGEGLY 94 (110)
Q Consensus 84 ~~Sa~~~~~i~ 94 (110)
++|++++.|+.
T Consensus 105 ~~s~~~~~~~~ 115 (124)
T smart00010 105 ETSAKTPEEGE 115 (124)
T ss_pred HHhCCCcchhh
Confidence 78999999874
No 297
>PRK00007 elongation factor G; Reviewed
Probab=97.84 E-value=0.00034 Score=49.80 Aligned_cols=48 Identities=15% Similarity=0.115 Sum_probs=31.7
Q ss_pred HhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCC
Q 044598 7 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 59 (110)
Q Consensus 7 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~ 59 (110)
..++.+|++++|+|+.+.....+ ...+..... .++|.++++||+|+.+
T Consensus 94 ~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~~----~~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 94 RSLRVLDGAVAVFDAVGGVEPQS-ETVWRQADK----YKVPRIAFVNKMDRTG 141 (693)
T ss_pred HHHHHcCEEEEEEECCCCcchhh-HHHHHHHHH----cCCCEEEEEECCCCCC
Confidence 45778999999999875322221 222322221 4688999999999864
No 298
>COG1084 Predicted GTPase [General function prediction only]
Probab=97.81 E-value=0.00019 Score=46.35 Aligned_cols=85 Identities=19% Similarity=0.150 Sum_probs=53.0
Q ss_pred CCEEEEEEECCChh--hHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEEeeeccc
Q 044598 12 TQGLIFVVDSNDRD--RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 89 (110)
Q Consensus 12 ~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 89 (110)
.++++|++|++..- +.+.-..++.++... -+.|+++|.||+|..+....+++...+.. ........+++..
T Consensus 248 ~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~---f~~p~v~V~nK~D~~~~e~~~~~~~~~~~----~~~~~~~~~~~~~ 320 (346)
T COG1084 248 AGVILFLFDPSETCGYSLEEQISLLEEIKEL---FKAPIVVVINKIDIADEEKLEEIEASVLE----EGGEEPLKISATK 320 (346)
T ss_pred cCeEEEEEcCccccCCCHHHHHHHHHHHHHh---cCCCeEEEEecccccchhHHHHHHHHHHh----hccccccceeeee
Confidence 57899999998532 344444555555332 34899999999998754444443333211 1111244678888
Q ss_pred CCCHHHHHHHHHHH
Q 044598 90 GEGLYEGLDWLSNN 103 (110)
Q Consensus 90 ~~~i~~l~~~l~~~ 103 (110)
+.+++.+...+...
T Consensus 321 ~~~~d~~~~~v~~~ 334 (346)
T COG1084 321 GCGLDKLREEVRKT 334 (346)
T ss_pred hhhHHHHHHHHHHH
Confidence 88888777766655
No 299
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=97.80 E-value=0.00022 Score=45.06 Aligned_cols=53 Identities=19% Similarity=0.157 Sum_probs=36.2
Q ss_pred chHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC
Q 044598 3 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60 (110)
Q Consensus 3 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~ 60 (110)
..+..+++.+|++++|+|+++..... ....+... .. .++|.++++||+|..+.
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~-~~~~~~~~-~~---~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVG-TEKLWEFA-DE---AGIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHH-HHHHHHHH-HH---cCCCEEEEEECCccCCC
Confidence 34677889999999999998643322 12222222 11 46899999999998765
No 300
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.76 E-value=2.4e-05 Score=46.40 Aligned_cols=42 Identities=19% Similarity=0.177 Sum_probs=27.6
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHH--hcCCCCCCCeEEEEeeCCCCCC
Q 044598 13 QGLIFVVDSNDRDRVVEARDELHRM--LNEDELRDAVLLVFANKQDLPN 59 (110)
Q Consensus 13 ~~~i~v~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~iiv~nK~Dl~~ 59 (110)
|++++|+|+.++.... ...+.+. +.. .++|+++|.||+|+.+
T Consensus 1 DvVl~VvDar~p~~~~--~~~i~~~~~l~~---~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCR--CPQVEEAVLQAG---GNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCC--CHHHHHHHHhcc---CCCCEEEEEehhhcCC
Confidence 7899999998753211 1122222 222 3689999999999954
No 301
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.75 E-value=0.00029 Score=47.07 Aligned_cols=87 Identities=16% Similarity=0.109 Sum_probs=53.7
Q ss_pred cccCCEEEEEEECCC---hhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHH-HhhhCCCcccCcceEEEe
Q 044598 9 FQNTQGLIFVVDSND---RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEI-TDKLGLHSLRQRHWYIQS 84 (110)
Q Consensus 9 ~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 84 (110)
+...|.+++|+|+.+ ++..+.+ .+.+.+ .....++|.||+|..+....++. .+.+.. ..-...+++.
T Consensus 71 ~~~~d~alLvV~~deGl~~qtgEhL--~iLdll-----gi~~giivltk~D~~d~~r~e~~i~~Il~~--l~l~~~~i~~ 141 (447)
T COG3276 71 LGGIDYALLVVAADEGLMAQTGEHL--LILDLL-----GIKNGIIVLTKADRVDEARIEQKIKQILAD--LSLANAKIFK 141 (447)
T ss_pred hcCCceEEEEEeCccCcchhhHHHH--HHHHhc-----CCCceEEEEeccccccHHHHHHHHHHHHhh--cccccccccc
Confidence 346899999999954 2222222 111221 23446999999998654322221 222111 1123346789
Q ss_pred eecccCCCHHHHHHHHHHHH
Q 044598 85 TCATSGEGLYEGLDWLSNNI 104 (110)
Q Consensus 85 ~Sa~~~~~i~~l~~~l~~~~ 104 (110)
+|+.+|+|++++.+.|.+..
T Consensus 142 ~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 142 TSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred cccccCCCHHHHHHHHHHhh
Confidence 99999999999999998877
No 302
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.75 E-value=0.00023 Score=45.50 Aligned_cols=87 Identities=20% Similarity=0.213 Sum_probs=51.2
Q ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC-CHHHHHhhhCCCc----ccCcceEEEe
Q 044598 10 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHS----LRQRHWYIQS 84 (110)
Q Consensus 10 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~-~~~~~~~~~~~~~----~~~~~~~~~~ 84 (110)
.-+|.+++|.-+.--+.....+. .++ ..-=++|.||.|..++. ...++...+.+.. ......+++.
T Consensus 163 ~~aDt~~~v~~pg~GD~~Q~iK~---Gim------EiaDi~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~ 233 (323)
T COG1703 163 NMADTFLVVMIPGAGDDLQGIKA---GIM------EIADIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVT 233 (323)
T ss_pred hhcceEEEEecCCCCcHHHHHHh---hhh------hhhheeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeE
Confidence 34677777765432222322222 122 22238999999965442 1222222232221 1233458999
Q ss_pred eecccCCCHHHHHHHHHHHHH
Q 044598 85 TCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 85 ~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
+||.+|+|++++...+.++..
T Consensus 234 t~A~~g~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 234 TSALEGEGIDELWDAIEDHRK 254 (323)
T ss_pred eeeccCCCHHHHHHHHHHHHH
Confidence 999999999999999988875
No 303
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=97.74 E-value=3.5e-05 Score=46.27 Aligned_cols=55 Identities=25% Similarity=0.205 Sum_probs=38.3
Q ss_pred eEEEEeeCCCCCCCCCH--HHHHhhhCCCcccCcceEEEeeecccCCCHHHHHHHHHHHH
Q 044598 47 VLLVFANKQDLPNAMNA--AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 104 (110)
Q Consensus 47 ~~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 104 (110)
.=++|.||.|+.+.... +...+-.. .-+...+++.+|+++|+|++++..|+....
T Consensus 144 aDllVInK~DLa~~v~~dlevm~~da~---~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 144 ADLLVINKTDLAPYVGADLEVMARDAK---EVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred eeEEEEehHHhHHHhCccHHHHHHHHH---HhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 35899999999765432 32222111 113455899999999999999999988754
No 304
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.74 E-value=5.4e-05 Score=49.13 Aligned_cols=84 Identities=18% Similarity=0.130 Sum_probs=52.4
Q ss_pred hHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEE
Q 044598 4 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQ 83 (110)
Q Consensus 4 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (110)
.....+..+|+++.|+|+.+|.+.. ...+.++. .++|.++|+||.|+.+....+.....+.. ..+...+
T Consensus 27 ~~~~~~~~~d~vvevvDar~P~~s~--~~~l~~~v-----~~k~~i~vlNK~DL~~~~~~~~W~~~~~~----~~~~~~~ 95 (322)
T COG1161 27 QLKEVLKSVDVVVEVVDARDPLGTR--NPELERIV-----KEKPKLLVLNKADLAPKEVTKKWKKYFKK----EEGIKPI 95 (322)
T ss_pred HHHHhcccCCEEEEEEecccccccc--CccHHHHH-----ccCCcEEEEehhhcCCHHHHHHHHHHHHh----cCCCccE
Confidence 3456788999999999999875421 12344443 34566999999999765433344443321 1133445
Q ss_pred eeecccCCCHHHHHH
Q 044598 84 STCATSGEGLYEGLD 98 (110)
Q Consensus 84 ~~Sa~~~~~i~~l~~ 98 (110)
.+++..+.+...+..
T Consensus 96 ~v~~~~~~~~~~i~~ 110 (322)
T COG1161 96 FVSAKSRQGGKKIRK 110 (322)
T ss_pred EEEeecccCccchHH
Confidence 677777777666653
No 305
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=97.63 E-value=9.4e-05 Score=45.87 Aligned_cols=106 Identities=22% Similarity=0.403 Sum_probs=70.3
Q ss_pred cchHHHhcccCCEEEEEEECCC----------hhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC----------
Q 044598 2 RPLWRHYFQNTQGLIFVVDSND----------RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---------- 61 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~---------- 61 (110)
|+.|-+++++...++|++..++ ++..+++...+..+...++..+.++|+..||.|+.+..
T Consensus 213 rrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKkDlLEekI~ySHl~~YF 292 (359)
T KOG0085|consen 213 RRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKILYSHLADYF 292 (359)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechhhhhhhhhhHHHHHHhC
Confidence 4568888888887777765432 33456666777777878888899999999999984321
Q ss_pred -------CHHHHHhh------hCCCcccCcceEEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 62 -------NAAEITDK------LGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 62 -------~~~~~~~~------~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
...+.... ..+.....+.+....++|.+.+|+.-+|..+.+.+...
T Consensus 293 Pe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~ 351 (359)
T KOG0085|consen 293 PEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL 351 (359)
T ss_pred cccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHh
Confidence 11111111 11211122334556788999999999999988877653
No 306
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.62 E-value=0.0005 Score=42.88 Aligned_cols=87 Identities=18% Similarity=0.119 Sum_probs=43.4
Q ss_pred CCEEEEEEECCC---hhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCC---------H-----------H----
Q 044598 12 TQGLIFVVDSND---RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---------A-----------A---- 64 (110)
Q Consensus 12 ~~~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~---------~-----------~---- 64 (110)
.-++++++|+.. +..+-.....-...+.. .+.|.+.|.||+|+.+... . .
T Consensus 123 ~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~---~~lP~vnvlsK~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~ 199 (238)
T PF03029_consen 123 RLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLR---LELPHVNVLSKIDLLSKYLEFILEWFEDPDSLEDLLESDYKKLNE 199 (238)
T ss_dssp --EEEEEE-GGG-SSHHHHHHHHHHHHHHHHH---HTSEEEEEE--GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHH
T ss_pred ceEEEEEEecccccChhhHHHHHHHHHHHHhh---CCCCEEEeeeccCcccchhHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 457899999763 33332221111111111 3699999999999965210 0 0
Q ss_pred HHHhhhCCCcccCcceEEEeeecccCCCHHHHHHHHHHHH
Q 044598 65 EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 104 (110)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 104 (110)
.+...+. . ......++++|+.+++|+.+++..+-+..
T Consensus 200 ~i~~~l~--~-~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 200 EIAELLD--D-FGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHCC--C-CSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHh--h-cCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 1111111 1 11223788999999999999999887654
No 307
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=97.61 E-value=0.00013 Score=45.05 Aligned_cols=78 Identities=6% Similarity=-0.044 Sum_probs=42.7
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCe-EEEEeeCCCCCCCCC-HHHHH----hhhCCCcccCcceE
Q 044598 8 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN-AAEIT----DKLGLHSLRQRHWY 81 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~Dl~~~~~-~~~~~----~~~~~~~~~~~~~~ 81 (110)
..+.+|++++|+|++....... ..+...+.. .+.| +++|+||+|+.+... .++.. ..+... .....+
T Consensus 100 ~ak~aDvVllviDa~~~~~~~~--~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~--~~~~~k 172 (225)
T cd01882 100 IAKVADLVLLLIDASFGFEMET--FEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTE--VYQGAK 172 (225)
T ss_pred HHHhcCEEEEEEecCcCCCHHH--HHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHh--hCCCCc
Confidence 3578999999999875322211 222223322 3466 455999999854321 12222 111100 112458
Q ss_pred EEeeecccCCC
Q 044598 82 IQSTCATSGEG 92 (110)
Q Consensus 82 ~~~~Sa~~~~~ 92 (110)
++.+||++...
T Consensus 173 i~~iSa~~~~~ 183 (225)
T cd01882 173 LFYLSGIVHGR 183 (225)
T ss_pred EEEEeeccCCC
Confidence 99999988743
No 308
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.55 E-value=4.2e-05 Score=47.90 Aligned_cols=87 Identities=17% Similarity=0.190 Sum_probs=47.2
Q ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCC-HHHHHhhhCCCc--ccCcceEEEeee
Q 044598 10 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHS--LRQRHWYIQSTC 86 (110)
Q Consensus 10 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~S 86 (110)
.-+|.+++|+-+..-+.....+.-+. ...=++|.||.|...+.. ..++...+.+.. ......+++.+|
T Consensus 141 ~~aD~~v~v~~Pg~GD~iQ~~KaGim---------EiaDi~vVNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~ts 211 (266)
T PF03308_consen 141 DMADTVVLVLVPGLGDEIQAIKAGIM---------EIADIFVVNKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTS 211 (266)
T ss_dssp TTSSEEEEEEESSTCCCCCTB-TTHH---------HH-SEEEEE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEB
T ss_pred HhcCeEEEEecCCCccHHHHHhhhhh---------hhccEEEEeCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEE
Confidence 45788888886543222211111111 233489999999644321 222333332211 123345899999
Q ss_pred cccCCCHHHHHHHHHHHHH
Q 044598 87 ATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 87 a~~~~~i~~l~~~l~~~~~ 105 (110)
|.+++|++++.+.+.++..
T Consensus 212 A~~~~Gi~eL~~~i~~~~~ 230 (266)
T PF03308_consen 212 ALEGEGIDELWEAIDEHRD 230 (266)
T ss_dssp TTTTBSHHHHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHHH
Confidence 9999999999999987653
No 309
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=97.44 E-value=0.0017 Score=42.74 Aligned_cols=79 Identities=18% Similarity=0.196 Sum_probs=45.7
Q ss_pred ccCCEEEEEEECCChhhHHHHHH--HHHHHhcCCCCCCCeEEEEeeCCCCCCCCC--HHHHHhhh-CCC-cccCcceEEE
Q 044598 10 QNTQGLIFVVDSNDRDRVVEARD--ELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKL-GLH-SLRQRHWYIQ 83 (110)
Q Consensus 10 ~~~~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~--~~~~~~~~-~~~-~~~~~~~~~~ 83 (110)
..||++|+++|+.. .-+++.+. .+..++ .-+.++++.||+||.+-.. .+++...+ .+. ........++
T Consensus 108 STadlAIlLVDAR~-Gvl~QTrRHs~I~sLL-----GIrhvvvAVNKmDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~I 181 (431)
T COG2895 108 STADLAILLVDARK-GVLEQTRRHSFIASLL-----GIRHVVVAVNKMDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFI 181 (431)
T ss_pred ccccEEEEEEecch-hhHHHhHHHHHHHHHh-----CCcEEEEEEeeecccccCHHHHHHHHHHHHHHHHHcCCCcceEE
Confidence 35899999999853 22333321 233332 2356899999999976432 12222211 110 0122334788
Q ss_pred eeecccCCCHH
Q 044598 84 STCATSGEGLY 94 (110)
Q Consensus 84 ~~Sa~~~~~i~ 94 (110)
++||..|.|+-
T Consensus 182 PiSAl~GDNV~ 192 (431)
T COG2895 182 PISALLGDNVV 192 (431)
T ss_pred echhccCCccc
Confidence 99999999875
No 310
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.34 E-value=0.00041 Score=45.91 Aligned_cols=62 Identities=18% Similarity=0.135 Sum_probs=38.9
Q ss_pred HHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhh
Q 044598 6 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKL 70 (110)
Q Consensus 6 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~ 70 (110)
+..++.+|++|.|+|+.+|.+-... ...+++... ..++..|+|.||+|+.+....+....++
T Consensus 141 rkvve~sDVVleVlDARDPlgtR~~--~vE~~V~~~-~gnKkLILVLNK~DLVPrEv~e~Wl~YL 202 (435)
T KOG2484|consen 141 RKVVEASDVVLEVLDARDPLGTRCP--EVEEAVLQA-HGNKKLILVLNKIDLVPREVVEKWLVYL 202 (435)
T ss_pred HHHHhhhheEEEeeeccCCCCCCCh--hHHHHHHhc-cCCceEEEEeehhccCCHHHHHHHHHHH
Confidence 4456789999999999988542211 122222111 1458899999999996554444444443
No 311
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.27 E-value=0.0013 Score=43.28 Aligned_cols=88 Identities=23% Similarity=0.169 Sum_probs=48.2
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCC----HHHHHhhh--CCCccc-CcceEEEe
Q 044598 12 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----AAEITDKL--GLHSLR-QRHWYIQS 84 (110)
Q Consensus 12 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~----~~~~~~~~--~~~~~~-~~~~~~~~ 84 (110)
.|..++|+|...-.....+..++... ...+..++|.||+|+..... .++..... .+.... ....++++
T Consensus 94 iDlm~lviDv~kG~QtQtAEcLiig~-----~~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~g~~PI~~ 168 (522)
T KOG0461|consen 94 IDLMILVIDVQKGKQTQTAECLIIGE-----LLCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGFDGNSPIVE 168 (522)
T ss_pred eeeeeEEEehhcccccccchhhhhhh-----hhccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCcCCCCceeE
Confidence 47789999987532222222222211 13456888999999754321 11111111 111111 23468999
Q ss_pred eecccC----CCHHHHHHHHHHHH
Q 044598 85 TCATSG----EGLYEGLDWLSNNI 104 (110)
Q Consensus 85 ~Sa~~~----~~i~~l~~~l~~~~ 104 (110)
+||..| +++.++.+.+...+
T Consensus 169 vsa~~G~~~~~~i~eL~e~l~s~i 192 (522)
T KOG0461|consen 169 VSAADGYFKEEMIQELKEALESRI 192 (522)
T ss_pred EecCCCccchhHHHHHHHHHHHhh
Confidence 999999 66666666666554
No 312
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=97.25 E-value=0.00049 Score=44.68 Aligned_cols=56 Identities=23% Similarity=0.217 Sum_probs=39.0
Q ss_pred CCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEEeeecccCCCHHHHHH-HHHHHHHh
Q 044598 45 DAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD-WLSNNIAN 106 (110)
Q Consensus 45 ~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~-~l~~~~~~ 106 (110)
.+|+++++||.|+.+.. +....+.. ......++.+||+.+.++.++.+ .+.++++.
T Consensus 214 ~KPvI~VlNK~Dl~~~~---~~~~~l~~---~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe 270 (318)
T cd01899 214 SKPMVIAANKADIPDAE---NNISKLRL---KYPDEIVVPTSAEAELALRRAAKQGLIKYDPG 270 (318)
T ss_pred CCcEEEEEEHHHccChH---HHHHHHHh---hCCCCeEEEEeCcccccHHHHHHhhHHHhCCC
Confidence 47999999999974322 22222211 11234788999999999999997 68888754
No 313
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.25 E-value=0.0021 Score=42.98 Aligned_cols=55 Identities=18% Similarity=0.315 Sum_probs=36.8
Q ss_pred chHHHh---cccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC
Q 044598 3 PLWRHY---FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60 (110)
Q Consensus 3 ~~~~~~---~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~ 60 (110)
++|... +..+|++|-|+|+.+|-.- --..+.+++... .+++-++.|.||+||...
T Consensus 202 RIW~ELyKViDSSDVvvqVlDARDPmGT--rc~~ve~ylkke-~phKHli~vLNKvDLVPt 259 (572)
T KOG2423|consen 202 RIWGELYKVIDSSDVVVQVLDARDPMGT--RCKHVEEYLKKE-KPHKHLIYVLNKVDLVPT 259 (572)
T ss_pred HHHHHHHHhhcccceeEEeeeccCCccc--ccHHHHHHHhhc-CCcceeEEEeeccccccH
Confidence 356544 4578999999999887421 112344444432 367889999999999654
No 314
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=97.20 E-value=0.00074 Score=41.97 Aligned_cols=98 Identities=24% Similarity=0.274 Sum_probs=53.9
Q ss_pred hHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcC--CCCCCCeEEEEeeCCCCCCCCCHHH--------HHhhhCCC
Q 044598 4 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNE--DELRDAVLLVFANKQDLPNAMNAAE--------ITDKLGLH 73 (110)
Q Consensus 4 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~iiv~nK~Dl~~~~~~~~--------~~~~~~~~ 73 (110)
..+..++++.++|||+|+.+.+ +.+....+...++. ...++..+.++..|+|+.......+ +.+...
T Consensus 69 ~~~~if~~v~~LIyV~D~qs~~-~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~-- 145 (232)
T PF04670_consen 69 QREEIFSNVGVLIYVFDAQSDD-YDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELE-- 145 (232)
T ss_dssp CHHHHHCTESEEEEEEETT-ST-CHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHH--
T ss_pred cHHHHHhccCEEEEEEEccccc-HHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhh--
Confidence 4566789999999999998433 22222222222211 1126788999999999854321111 111111
Q ss_pred cccCcceEEEeeecccCCCHHHHHHHHHHHHH
Q 044598 74 SLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 74 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
......+.++.+|..+ +.+.+.+..+.+.+.
T Consensus 146 ~~~~~~~~~~~TSI~D-~Sly~A~S~Ivq~Li 176 (232)
T PF04670_consen 146 DLGIEDITFFLTSIWD-ESLYEAWSKIVQKLI 176 (232)
T ss_dssp HTT-TSEEEEEE-TTS-THHHHHHHHHHHTTS
T ss_pred hccccceEEEeccCcC-cHHHHHHHHHHHHHc
Confidence 0111247888999988 467777777776653
No 315
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=97.19 E-value=0.0015 Score=35.84 Aligned_cols=40 Identities=23% Similarity=0.398 Sum_probs=26.8
Q ss_pred cccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeC
Q 044598 9 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANK 54 (110)
Q Consensus 9 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK 54 (110)
+..+|+++||+|+.++. .+....+.+.++ .++|+++|+||
T Consensus 77 ~~~~d~ii~vv~~~~~~--~~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 77 ISKSDLIIYVVDASNPI--TEDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp HCTESEEEEEEETTSHS--HHHHHHHHHHHH----TTSEEEEEEES
T ss_pred HHHCCEEEEEEECCCCC--CHHHHHHHHHHh----cCCCEEEEEcC
Confidence 48999999999987632 222222322232 57999999998
No 316
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.16 E-value=0.0061 Score=42.41 Aligned_cols=84 Identities=19% Similarity=0.165 Sum_probs=51.4
Q ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC-----CHHHHHhhhCCCcccCcceEEEe
Q 044598 10 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSLRQRHWYIQS 84 (110)
Q Consensus 10 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 84 (110)
..||++.+++|.+++.++.-......... .....|.++|+.|+|+.+.. +..++...++++. ++ .
T Consensus 494 ~~cDv~~~~YDsS~p~sf~~~a~v~~~~~---~~~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~------P~-~ 563 (625)
T KOG1707|consen 494 AACDVACLVYDSSNPRSFEYLAEVYNKYF---DLYKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPP------PI-H 563 (625)
T ss_pred ceeeeEEEecccCCchHHHHHHHHHHHhh---hccCCceEEEeeccccchhhhccCCChHHHHHhcCCCC------Ce-e
Confidence 57999999999998877765443332221 12579999999999996543 2233444444321 22 3
Q ss_pred eecccCCCHHHHHHHHHHHH
Q 044598 85 TCATSGEGLYEGLDWLSNNI 104 (110)
Q Consensus 85 ~Sa~~~~~i~~l~~~l~~~~ 104 (110)
+|.++... .++|..|....
T Consensus 564 ~S~~~~~s-~~lf~kL~~~A 582 (625)
T KOG1707|consen 564 ISSKTLSS-NELFIKLATMA 582 (625)
T ss_pred eccCCCCC-chHHHHHHHhh
Confidence 45553223 67777766543
No 317
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=97.05 E-value=0.0017 Score=42.23 Aligned_cols=84 Identities=23% Similarity=0.244 Sum_probs=51.9
Q ss_pred cccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCe----EEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEEe
Q 044598 9 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV----LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQS 84 (110)
Q Consensus 9 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~----~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (110)
...+|+++.|.|.+.|.-- .-..-....+..-..+..| ++=|.||.|..+....++ +...+.
T Consensus 255 VaeadlllHvvDiShP~ae-~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E-------------~n~~v~ 320 (410)
T KOG0410|consen 255 VAEADLLLHVVDISHPNAE-EQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEE-------------KNLDVG 320 (410)
T ss_pred HhhcceEEEEeecCCccHH-HHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCccc-------------cCCccc
Confidence 4579999999999987532 2223333334332322233 566778888654432111 111447
Q ss_pred eecccCCCHHHHHHHHHHHHHh
Q 044598 85 TCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 85 ~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
+||++|.|.+++.+.+-..+..
T Consensus 321 isaltgdgl~el~~a~~~kv~~ 342 (410)
T KOG0410|consen 321 ISALTGDGLEELLKAEETKVAS 342 (410)
T ss_pred cccccCccHHHHHHHHHHHhhh
Confidence 8999999999999888766543
No 318
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=96.84 E-value=0.002 Score=40.85 Aligned_cols=56 Identities=34% Similarity=0.577 Sum_probs=41.8
Q ss_pred cchHHHhcccCCEEEEEEECCChh----------hHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCC
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRD----------RVVEARDELHRMLNEDELRDAVLLVFANKQDL 57 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl 57 (110)
|..|-.++.+..++|||+.+++.+ .+.++..++..+-...++....+|+..||.|+
T Consensus 216 RrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqDl 281 (379)
T KOG0099|consen 216 RRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 281 (379)
T ss_pred hhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHHH
Confidence 567888999999999999876522 34455555555544555567889999999997
No 319
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=96.83 E-value=0.0094 Score=41.46 Aligned_cols=85 Identities=24% Similarity=0.215 Sum_probs=48.7
Q ss_pred cccCCEEEEEEECCChhhHHHHH------HHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhh-----CCCcc
Q 044598 9 FQNTQGLIFVVDSNDRDRVVEAR------DELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKL-----GLHSL 75 (110)
Q Consensus 9 ~~~~~~~i~v~d~~~~~~~~~~~------~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~-----~~~~~ 75 (110)
...||++++|+|++. ..|+.-. .+...+++. +.-..++++.||+|+.+=. ..+++...+ ....+
T Consensus 276 ~sqaD~avLvvd~s~-~~FE~gfd~~gQtrEha~llr~--Lgi~qlivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf 352 (603)
T KOG0458|consen 276 ASQADVAVLVVDAST-GEFESGFDPGGQTREHALLLRS--LGISQLIVAINKMDLVSWSQDRFEEIKNKLSSFLKESCGF 352 (603)
T ss_pred ccccceEEEEEECCc-chhhhccCCCCchHHHHHHHHH--cCcceEEEEeecccccCccHHHHHHHHHHHHHHHHHhcCc
Confidence 356899999999974 2232111 122222222 1245699999999986422 123333322 11112
Q ss_pred cCcceEEEeeecccCCCHHHH
Q 044598 76 RQRHWYIQSTCATSGEGLYEG 96 (110)
Q Consensus 76 ~~~~~~~~~~Sa~~~~~i~~l 96 (110)
....+.+++||+.+|+|+-..
T Consensus 353 ~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 353 KESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred ccCCcceEecccccCCccccc
Confidence 334568999999999997643
No 320
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=96.75 E-value=0.008 Score=38.86 Aligned_cols=86 Identities=23% Similarity=0.241 Sum_probs=47.1
Q ss_pred cCCEEEEEEECCCh---hhHHHHHHHHHHHhcCCCCCCC-eEEEEeeCCCCCCCCCH-----HHHHhhhCCCcccCcceE
Q 044598 11 NTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDA-VLLVFANKQDLPNAMNA-----AEITDKLGLHSLRQRHWY 81 (110)
Q Consensus 11 ~~~~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~iiv~nK~Dl~~~~~~-----~~~~~~~~~~~~~~~~~~ 81 (110)
++|++|+|+.+++- +..+.+ ++.+. -+. -++++.||+|+.+.... .++.+.+....+.....|
T Consensus 98 qmDgAILVVsA~dGpmPqTrEHi--Llarq------vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~gd~~P 169 (394)
T COG0050 98 QMDGAILVVAATDGPMPQTREHI--LLARQ------VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPGDDTP 169 (394)
T ss_pred hcCccEEEEEcCCCCCCcchhhh--hhhhh------cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCCCCCcc
Confidence 58999999988763 222222 11111 345 47888999999764321 223333332223334567
Q ss_pred EEeeecccCC-C-------HHHHHHHHHHHH
Q 044598 82 IQSTCATSGE-G-------LYEGLDWLSNNI 104 (110)
Q Consensus 82 ~~~~Sa~~~~-~-------i~~l~~~l~~~~ 104 (110)
++..||.... | +.++++.+-.++
T Consensus 170 ii~gSal~ale~~~~~~~~i~eLm~avd~yi 200 (394)
T COG0050 170 IIRGSALKALEGDAKWEAKIEELMDAVDSYI 200 (394)
T ss_pred eeechhhhhhcCCcchHHHHHHHHHHHHhcC
Confidence 7777875432 2 455555555544
No 321
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=96.69 E-value=0.0075 Score=37.75 Aligned_cols=54 Identities=13% Similarity=0.132 Sum_probs=33.4
Q ss_pred chHHHhccc-CCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC
Q 044598 3 PLWRHYFQN-TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60 (110)
Q Consensus 3 ~~~~~~~~~-~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~ 60 (110)
.+...|+++ .+.+++|+|+.......+... +.+.+. ..+.|+++|+||.|..+.
T Consensus 153 ~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~-ia~~ld---~~~~rti~ViTK~D~~~~ 207 (240)
T smart00053 153 DMIKQFISKEECLILAVTPANVDLANSDALK-LAKEVD---PQGERTIGVITKLDLMDE 207 (240)
T ss_pred HHHHHHHhCccCeEEEEEECCCCCCchhHHH-HHHHHH---HcCCcEEEEEECCCCCCc
Confidence 466788884 558999999864211112112 222221 146899999999998653
No 322
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=96.58 E-value=0.006 Score=43.87 Aligned_cols=51 Identities=20% Similarity=0.140 Sum_probs=32.8
Q ss_pred hHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCC
Q 044598 4 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 59 (110)
Q Consensus 4 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~ 59 (110)
.....++.+|++++|+|+.+...... ...+..... .+.|.++++||+|...
T Consensus 102 ~~~~al~~aD~~llVvda~~g~~~~t-~~~~~~~~~----~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 102 DVTRAMRAVDGAIVVVCAVEGVMPQT-ETVLRQALK----ENVKPVLFINKVDRLI 152 (720)
T ss_pred HHHHHHHhcCEEEEEEecCCCCCccH-HHHHHHHHH----cCCCEEEEEEChhccc
Confidence 44567899999999999875321111 122222211 3567889999999854
No 323
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=96.53 E-value=0.013 Score=34.15 Aligned_cols=49 Identities=24% Similarity=0.365 Sum_probs=31.7
Q ss_pred chHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCC
Q 044598 3 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 55 (110)
Q Consensus 3 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~ 55 (110)
.++..|+..+|++|+|.++...-.-.+ ...+...... ....+++|.||.
T Consensus 120 ~~~~~~~~~~d~vi~V~~~~~~~~~~~-~~~l~~~~~~---~~~~~i~V~nk~ 168 (168)
T PF00350_consen 120 EITEEYLPKADVVIFVVDANQDLTESD-MEFLKQMLDP---DKSRTIFVLNKA 168 (168)
T ss_dssp HHHHHHHSTTEEEEEEEETTSTGGGHH-HHHHHHHHTT---TCSSEEEEEE-G
T ss_pred HHHHHhhccCCEEEEEeccCcccchHH-HHHHHHHhcC---CCCeEEEEEcCC
Confidence 467889999999999999987433222 2333333332 234489999984
No 324
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=96.52 E-value=0.018 Score=39.04 Aligned_cols=47 Identities=23% Similarity=0.342 Sum_probs=30.0
Q ss_pred Hhcc-cCCEEEEEE-ECC--C--hhhHHHHH-HHHHHHhcCCCCCCCeEEEEeeCCCC
Q 044598 7 HYFQ-NTQGLIFVV-DSN--D--RDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDL 57 (110)
Q Consensus 7 ~~~~-~~~~~i~v~-d~~--~--~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~Dl 57 (110)
..++ +++..|+|. |.+ + .+.+.+.. .++.+ ++. .++|++++.||+|-
T Consensus 139 kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e-Lk~---~~kPfiivlN~~dp 192 (492)
T TIGR02836 139 KVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE-LKE---LNKPFIILLNSTHP 192 (492)
T ss_pred HHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH-HHh---cCCCEEEEEECcCC
Confidence 3455 899999998 764 1 11233333 33433 333 58999999999993
No 325
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.47 E-value=0.0016 Score=42.18 Aligned_cols=58 Identities=14% Similarity=0.113 Sum_probs=39.7
Q ss_pred CeEEEEeeCCCCCCCCC----HHHHHhhhCCCcccCcceEEEeeecccCCCHHHHHHHHHHHHH
Q 044598 46 AVLLVFANKQDLPNAMN----AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 46 ~~~iiv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
+.++++.||+|+..... .+++..... .....+.+++++||--+.|++.+.+.+.+.++
T Consensus 180 khiiilQNKiDli~e~~A~eq~e~I~kFi~--~t~ae~aPiiPisAQlkyNId~v~eyivkkIP 241 (466)
T KOG0466|consen 180 KHIIILQNKIDLIKESQALEQHEQIQKFIQ--GTVAEGAPIIPISAQLKYNIDVVCEYIVKKIP 241 (466)
T ss_pred ceEEEEechhhhhhHHHHHHHHHHHHHHHh--ccccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence 56899999999965321 122222111 11224558999999999999999999988764
No 326
>PTZ00416 elongation factor 2; Provisional
Probab=96.46 E-value=0.0041 Score=45.40 Aligned_cols=48 Identities=25% Similarity=0.302 Sum_probs=32.6
Q ss_pred HHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCC
Q 044598 6 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 58 (110)
Q Consensus 6 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 58 (110)
...++.+|++|+|+|+.+.-.. .....+..+.. .++|.+++.||+|+.
T Consensus 110 ~~al~~~D~ailVvda~~g~~~-~t~~~~~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 110 TAALRVTDGALVVVDCVEGVCV-QTETVLRQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred HHHHhcCCeEEEEEECCCCcCc-cHHHHHHHHHH----cCCCEEEEEEChhhh
Confidence 4457889999999998763221 12233333322 368999999999986
No 327
>PRK09602 translation-associated GTPase; Reviewed
Probab=96.44 E-value=0.0076 Score=40.43 Aligned_cols=53 Identities=25% Similarity=0.240 Sum_probs=34.8
Q ss_pred CCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEEeeecccCCCHHH-HHHHHHHHH
Q 044598 45 DAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE-GLDWLSNNI 104 (110)
Q Consensus 45 ~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~-l~~~l~~~~ 104 (110)
.+|+++|+||.|..... ..+...... ....++++||+.+.++++ +.+.+.+++
T Consensus 217 ~KPvI~VlNK~D~~~~~--~~l~~i~~~-----~~~~vvpISA~~e~~l~~~l~~~i~~~l 270 (396)
T PRK09602 217 SKPMVIAANKADLPPAE--ENIERLKEE-----KYYIVVPTSAEAELALRRAAKAGLIDYI 270 (396)
T ss_pred CCCEEEEEEchhcccch--HHHHHHHhc-----CCCcEEEEcchhhhhHHHHHHHhHHhhC
Confidence 58999999999975321 112221111 233578999999999988 666666654
No 328
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=96.34 E-value=0.04 Score=33.17 Aligned_cols=95 Identities=12% Similarity=0.058 Sum_probs=51.0
Q ss_pred hcccCCEEEEEEECCChhh-HHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHH--------HHhhhCCCcccCc
Q 044598 8 YFQNTQGLIFVVDSNDRDR-VVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE--------ITDKLGLHSLRQR 78 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~--------~~~~~~~~~~~~~ 78 (110)
...+.|++|+|+|+..... -.....++.+.... ..-.++++++|+.|.......++ +...... +..+
T Consensus 80 ~~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~--~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~--c~~r 155 (196)
T cd01852 80 SAPGPHAFLLVVPLGRFTEEEEQAVETLQELFGE--KVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEK--CGGR 155 (196)
T ss_pred cCCCCEEEEEEEECCCcCHHHHHHHHHHHHHhCh--HhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHH--hCCe
Confidence 3568899999999876211 11222333333221 11367899999999654322111 1111100 1111
Q ss_pred ceEEEee--ecccCCCHHHHHHHHHHHHHh
Q 044598 79 HWYIQST--CATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 79 ~~~~~~~--Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
...+-.. ++..+.++.++++.+.+.+..
T Consensus 156 ~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 156 YVAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred EEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 1111111 366788899999999888764
No 329
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=96.29 E-value=0.0094 Score=38.05 Aligned_cols=44 Identities=9% Similarity=0.207 Sum_probs=27.6
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCC
Q 044598 11 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 59 (110)
Q Consensus 11 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~ 59 (110)
++|+++|+++.+.. .+...+..+.+.+. ..+|+++|+||+|+..
T Consensus 114 rvh~~ly~i~~~~~-~l~~~D~~~lk~l~----~~v~vi~VinK~D~l~ 157 (276)
T cd01850 114 RVHACLYFIEPTGH-GLKPLDIEFMKRLS----KRVNIIPVIAKADTLT 157 (276)
T ss_pred ceEEEEEEEeCCCC-CCCHHHHHHHHHHh----ccCCEEEEEECCCcCC
Confidence 57889999987742 22222222222222 2589999999999854
No 330
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=96.11 E-value=0.015 Score=37.73 Aligned_cols=58 Identities=16% Similarity=0.140 Sum_probs=37.8
Q ss_pred HHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhh
Q 044598 5 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDK 69 (110)
Q Consensus 5 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~ 69 (110)
.+..+...|++|=|=|+.-|-+- .-..+.+++ ..+|-|||.||+||.+......+.+.
T Consensus 40 i~~~l~~~D~iiEvrDaRiPLss--rn~~~~~~~-----~~k~riiVlNK~DLad~~~~k~~iq~ 97 (335)
T KOG2485|consen 40 IQNRLPLVDCIIEVRDARIPLSS--RNELFQDFL-----PPKPRIIVLNKMDLADPKEQKKIIQY 97 (335)
T ss_pred HHhhcccccEEEEeeccccCCcc--ccHHHHHhc-----CCCceEEEEecccccCchhhhHHHHH
Confidence 35567889999999998755322 112233332 36889999999999875433333333
No 331
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=96.10 E-value=0.072 Score=35.90 Aligned_cols=60 Identities=22% Similarity=0.139 Sum_probs=36.0
Q ss_pred CCeEEEEeeCCCCCCCCC----HHHHHhhhC----CCc---------------ccCc-ceEEEeeecccCCCHHHHHHHH
Q 044598 45 DAVLLVFANKQDLPNAMN----AAEITDKLG----LHS---------------LRQR-HWYIQSTCATSGEGLYEGLDWL 100 (110)
Q Consensus 45 ~~~~iiv~nK~Dl~~~~~----~~~~~~~~~----~~~---------------~~~~-~~~~~~~Sa~~~~~i~~l~~~l 100 (110)
..|++++.+|+|+.+... .+++...+. .+. ..++ -.|++.+|+.+|+|++-+.+ +
T Consensus 255 ~lPviVvvTK~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e-~ 333 (527)
T COG5258 255 ELPVIVVVTKIDMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDE-F 333 (527)
T ss_pred cCCEEEEEEecccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHH-H
Confidence 679999999999865431 122222221 000 0112 46999999999999885544 3
Q ss_pred HHHHH
Q 044598 101 SNNIA 105 (110)
Q Consensus 101 ~~~~~ 105 (110)
...++
T Consensus 334 f~~Lp 338 (527)
T COG5258 334 FLLLP 338 (527)
T ss_pred HHhCC
Confidence 33333
No 332
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=96.09 E-value=0.015 Score=42.61 Aligned_cols=48 Identities=23% Similarity=0.214 Sum_probs=32.2
Q ss_pred HHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCC
Q 044598 6 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 58 (110)
Q Consensus 6 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 58 (110)
...++.+|++|+|+|+.+.-.. .....+..+.. .++|++++.||+|..
T Consensus 116 ~~al~~~D~ailVvda~~Gv~~-~t~~~~~~~~~----~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 116 TAALRITDGALVVVDCIEGVCV-QTETVLRQALG----ERIRPVLTVNKMDRC 163 (843)
T ss_pred HHHHhhcCEEEEEEECCCCCcc-cHHHHHHHHHH----CCCCEEEEEECCccc
Confidence 3446789999999998753221 12223333322 468999999999986
No 333
>PRK07560 elongation factor EF-2; Reviewed
Probab=96.00 E-value=0.015 Score=41.97 Aligned_cols=49 Identities=22% Similarity=0.251 Sum_probs=31.7
Q ss_pred HHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCC
Q 044598 5 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 58 (110)
Q Consensus 5 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 58 (110)
....++.+|++++|+|+...... +....+..... .+.|.+++.||+|..
T Consensus 104 ~~~~l~~~D~avlVvda~~g~~~-~t~~~~~~~~~----~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 104 VTRAMRAVDGAIVVVDAVEGVMP-QTETVLRQALR----ERVKPVLFINKVDRL 152 (731)
T ss_pred HHHHHHhcCEEEEEEECCCCCCc-cHHHHHHHHHH----cCCCeEEEEECchhh
Confidence 34567889999999998753221 22223333222 246789999999975
No 334
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=95.81 E-value=0.049 Score=37.13 Aligned_cols=60 Identities=22% Similarity=0.335 Sum_probs=37.3
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCH---HHHHhhhCC
Q 044598 8 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA---AEITDKLGL 72 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~---~~~~~~~~~ 72 (110)
.+..+|.+++|+|+..--.. ....++. +. .++++|++-+.||.|.....+. .++.+.+++
T Consensus 101 tLtAvDsAvMVIDaAKGiE~-qT~KLfe-Vc---rlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i 163 (528)
T COG4108 101 TLTAVDSAVMVIDAAKGIEP-QTLKLFE-VC---RLRDIPIFTFINKLDREGRDPLELLDEIEEELGI 163 (528)
T ss_pred HHHhhheeeEEEecccCccH-HHHHHHH-HH---hhcCCceEEEeeccccccCChHHHHHHHHHHhCc
Confidence 35678999999998642111 1122222 22 2378999999999998765543 344555554
No 335
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=95.70 E-value=0.0042 Score=39.63 Aligned_cols=85 Identities=13% Similarity=0.014 Sum_probs=46.5
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC------CHHHHHh-hhCCCc-ccCcceEEEee
Q 044598 14 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM------NAAEITD-KLGLHS-LRQRHWYIQST 85 (110)
Q Consensus 14 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~------~~~~~~~-~~~~~~-~~~~~~~~~~~ 85 (110)
.+++++|++-+-...+ .....++.+ .+.|+.+|+||||..... +...+.. ..++.. ......+++.+
T Consensus 222 ~~FLLvd~sv~i~~~D--~~~i~~~ge---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~~~ 296 (320)
T KOG2486|consen 222 RVFLLVDASVPIQPTD--NPEIAWLGE---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWIYV 296 (320)
T ss_pred eeeeeeeccCCCCCCC--hHHHHHHhh---cCCCeEEeeehhhhhhhccccccCccccceeehhhccccceeccCCceee
Confidence 3566778765422211 112233332 479999999999964321 1111111 111111 11223356689
Q ss_pred ecccCCCHHHHHHHHHHH
Q 044598 86 CATSGEGLYEGLDWLSNN 103 (110)
Q Consensus 86 Sa~~~~~i~~l~~~l~~~ 103 (110)
|+.++.|++.++-.+.+.
T Consensus 297 Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 297 SSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred ecccccCceeeeeehhhh
Confidence 999999999887766543
No 336
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=95.25 E-value=0.13 Score=36.96 Aligned_cols=52 Identities=13% Similarity=0.318 Sum_probs=34.9
Q ss_pred hHHHhcccCCEEEEEEECCChhhHHHH-HHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC
Q 044598 4 LWRHYFQNTQGLIFVVDSNDRDRVVEA-RDELHRMLNEDELRDAVLLVFANKQDLPNAM 61 (110)
Q Consensus 4 ~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~ 61 (110)
...++..++|+++||..+.+. +... ...+...- . ..+.++|+.||+|.....
T Consensus 225 wid~~cldaDVfVlV~NaEnt--lt~sek~Ff~~vs-~---~KpniFIlnnkwDasase 277 (749)
T KOG0448|consen 225 WIDSFCLDADVFVLVVNAENT--LTLSEKQFFHKVS-E---EKPNIFILNNKWDASASE 277 (749)
T ss_pred HHHHHhhcCCeEEEEecCccH--hHHHHHHHHHHhh-c---cCCcEEEEechhhhhccc
Confidence 457788999999999988654 3323 33444432 2 245588999999986553
No 337
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=95.12 E-value=0.087 Score=34.96 Aligned_cols=74 Identities=23% Similarity=0.247 Sum_probs=39.7
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCH-----HHHHhhhCCCcccCcceEEEee
Q 044598 11 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-----AEITDKLGLHSLRQRHWYIQST 85 (110)
Q Consensus 11 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 85 (110)
..|++|+|+.+++-+ ..+.++.+.-..+- .-..++++.||.|+.+.... -++.+.+....+.....|++.-
T Consensus 140 qMDGaILVVaatDG~-MPQTrEHlLLArQV---GV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd~~PvI~G 215 (449)
T KOG0460|consen 140 QMDGAILVVAATDGP-MPQTREHLLLARQV---GVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGDNTPVIRG 215 (449)
T ss_pred ccCceEEEEEcCCCC-CcchHHHHHHHHHc---CCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCCCCCeeec
Confidence 579999999988732 22233322211111 22558999999998744321 1122322222233445677777
Q ss_pred ecc
Q 044598 86 CAT 88 (110)
Q Consensus 86 Sa~ 88 (110)
||+
T Consensus 216 SAL 218 (449)
T KOG0460|consen 216 SAL 218 (449)
T ss_pred chh
Confidence 764
No 338
>COG3596 Predicted GTPase [General function prediction only]
Probab=94.96 E-value=0.067 Score=34.28 Aligned_cols=102 Identities=19% Similarity=0.204 Sum_probs=61.6
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC---------CHHHHHhhh--
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---------NAAEITDKL-- 70 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~---------~~~~~~~~~-- 70 (110)
|.....++.+.|.+++++|+.++. +.....++..+... ..+.+++++.|.+|..... +...+.+..
T Consensus 108 r~~~~d~l~~~DLvL~l~~~~dra-L~~d~~f~~dVi~~--~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~ 184 (296)
T COG3596 108 RQLYRDYLPKLDLVLWLIKADDRA-LGTDEDFLRDVIIL--GLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEE 184 (296)
T ss_pred HHHHHHHhhhccEEEEeccCCCcc-ccCCHHHHHHHHHh--ccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHH
Confidence 345677889999999999998753 22112333443322 1348999999999974321 111111110
Q ss_pred --C-CCcccCcceEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 71 --G-LHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 71 --~-~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
. ....-..-.+++.+|+..+-|++.+...+.+.++.
T Consensus 185 k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~ 223 (296)
T COG3596 185 KAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITALPV 223 (296)
T ss_pred HHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCcc
Confidence 0 00001122367777889999999999999988764
No 339
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.95 E-value=0.095 Score=32.90 Aligned_cols=48 Identities=23% Similarity=0.276 Sum_probs=31.9
Q ss_pred HHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCC-CeEEEEeeCCCCC
Q 044598 6 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRD-AVLLVFANKQDLP 58 (110)
Q Consensus 6 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~iiv~nK~Dl~ 58 (110)
+...+++|.+|.|+|++- .++..+. .+.++..+ .+ +++.+|.||.|-.
T Consensus 150 Rg~~~~vD~vivVvDpS~-~sl~tae-ri~~L~~e---lg~k~i~~V~NKv~e~ 198 (255)
T COG3640 150 RGTIEGVDLVIVVVDPSY-KSLRTAE-RIKELAEE---LGIKRIFVVLNKVDEE 198 (255)
T ss_pred cccccCCCEEEEEeCCcH-HHHHHHH-HHHHHHHH---hCCceEEEEEeeccch
Confidence 345678999999999873 3444332 23333222 34 8999999999953
No 340
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=94.75 E-value=0.2 Score=32.95 Aligned_cols=68 Identities=19% Similarity=0.180 Sum_probs=37.0
Q ss_pred cCCEEEEEEECCChhhHHH-HHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEEeeec
Q 044598 11 NTQGLIFVVDSNDRDRVVE-ARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 87 (110)
Q Consensus 11 ~~~~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 87 (110)
.-|.++-|+|+..-..... ......+.+...+ +++.||+|+.++...+.+...+. ..+...+++.+|.
T Consensus 116 ~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~AD------~ivlNK~Dlv~~~~l~~l~~~l~---~lnp~A~i~~~~~ 184 (323)
T COG0523 116 RLDGVVTVVDAAHFLEGLDAIAELAEDQLAFAD------VIVLNKTDLVDAEELEALEARLR---KLNPRARIIETSY 184 (323)
T ss_pred eeceEEEEEeHHHhhhhHHHHHHHHHHHHHhCc------EEEEecccCCCHHHHHHHHHHHH---HhCCCCeEEEccc
Confidence 3577999999875433221 2233444443322 88999999976543333333221 1234446666665
No 341
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=94.60 E-value=0.52 Score=31.50 Aligned_cols=70 Identities=14% Similarity=0.306 Sum_probs=48.9
Q ss_pred chHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCc
Q 044598 3 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS 74 (110)
Q Consensus 3 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~ 74 (110)
++...++..+|.+++|++.+ -.++...++.+..+.+. .....+..+++||.+.....+..++...++++.
T Consensus 231 ~~t~~vL~~Sd~iviv~e~s-l~slR~ak~lld~l~~~-r~~~~~p~lv~n~~~~~~~~~~~dl~~~~~i~~ 300 (366)
T COG4963 231 DWTRQVLSGSDEIVIVAEPS-LASLRNAKELLDELKRL-RPNDPKPILVLNRVGVPKRPEPSDLEEILGIES 300 (366)
T ss_pred hHHHHHHhcCCeEEEEeccc-HHHHHHHHHHHHHHHHh-CCCCCCceEEeeecCCCCCCCHHHHHHHhCCch
Confidence 35678899999999999976 34666666666655433 334678899999999866655556666555543
No 342
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.31 E-value=0.12 Score=34.83 Aligned_cols=51 Identities=16% Similarity=0.261 Sum_probs=32.0
Q ss_pred HHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCC
Q 044598 5 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 59 (110)
Q Consensus 5 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~ 59 (110)
.+=|.++||.+|+++|+...+--.+...-+..+ +. ..-.+-+|.||.|..+
T Consensus 175 ~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aL-kG---~EdkiRVVLNKADqVd 225 (532)
T KOG1954|consen 175 LEWFAERVDRIILLFDAHKLDISDEFKRVIDAL-KG---HEDKIRVVLNKADQVD 225 (532)
T ss_pred HHHHHHhccEEEEEechhhccccHHHHHHHHHh-hC---CcceeEEEeccccccC
Confidence 344678999999999975432222222333333 22 3456889999999754
No 343
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=94.23 E-value=0.073 Score=37.36 Aligned_cols=95 Identities=15% Similarity=0.250 Sum_probs=59.3
Q ss_pred HhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC----CCHHHHHhhhCCCcccCcceEE
Q 044598 7 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----MNAAEITDKLGLHSLRQRHWYI 82 (110)
Q Consensus 7 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~ 82 (110)
.|..-.|++|||+...+..++.........+.........|+++++++.-.... .......... ........
T Consensus 91 Qft~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~----~~~krcsy 166 (749)
T KOG0705|consen 91 QFCQWVDAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLS----AQMKRCSY 166 (749)
T ss_pred hhhhhccceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHH----HhcCccce
Confidence 466678999999988887777766544444432222246788888877433221 1111111111 12234567
Q ss_pred EeeecccCCCHHHHHHHHHHHHH
Q 044598 83 QSTCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 83 ~~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
++++|..|.+++.+|+.+...+.
T Consensus 167 ~et~atyGlnv~rvf~~~~~k~i 189 (749)
T KOG0705|consen 167 YETCATYGLNVERVFQEVAQKIV 189 (749)
T ss_pred eecchhhhhhHHHHHHHHHHHHH
Confidence 79999999999999998876653
No 344
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=94.07 E-value=0.1 Score=30.45 Aligned_cols=42 Identities=21% Similarity=0.305 Sum_probs=22.4
Q ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCC
Q 044598 10 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 57 (110)
Q Consensus 10 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl 57 (110)
-..+.+++++|+............+.+.++.. =+++.||+|+
T Consensus 117 ~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a------d~ivlnk~dl 158 (158)
T cd03112 117 YLLDGVITLVDAKHANQHLDQQTEAQSQIAFA------DRILLNKTDL 158 (158)
T ss_pred eeeccEEEEEEhhHhHHHhhccHHHHHHHHHC------CEEEEecccC
Confidence 35788899999764322111112222223222 2678899985
No 345
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=94.07 E-value=0.089 Score=34.73 Aligned_cols=59 Identities=12% Similarity=0.042 Sum_probs=37.4
Q ss_pred CCeEEEEeeCCCCCC----CCC--HHH---HHhhhCCCcccCcceEEEeeecccCCCHHHHHHHHHHHH
Q 044598 45 DAVLLVFANKQDLPN----AMN--AAE---ITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 104 (110)
Q Consensus 45 ~~~~iiv~nK~Dl~~----~~~--~~~---~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 104 (110)
++|+++|++|||... ... .+. +...++ ..+...+...+++|++...|++-+...|.+.+
T Consensus 222 Gi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lR-kFCLr~GaaLiyTSvKE~KNidllyKYivhr~ 289 (473)
T KOG3905|consen 222 GIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLR-KFCLRYGAALIYTSVKETKNIDLLYKYIVHRS 289 (473)
T ss_pred CCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHH-HHHHHcCceeEEeecccccchHHHHHHHHHHh
Confidence 469999999999722 111 111 111110 00234566788999999999998888877654
No 346
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=94.02 E-value=0.27 Score=35.65 Aligned_cols=50 Identities=18% Similarity=0.201 Sum_probs=32.6
Q ss_pred HHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC
Q 044598 6 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60 (110)
Q Consensus 6 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~ 60 (110)
...++-+|+++.|+|+.+--. .+....|..... .++|.+++.||+|....
T Consensus 94 ~rslrvlDgavvVvdaveGV~-~QTEtv~rqa~~----~~vp~i~fiNKmDR~~a 143 (697)
T COG0480 94 ERSLRVLDGAVVVVDAVEGVE-PQTETVWRQADK----YGVPRILFVNKMDRLGA 143 (697)
T ss_pred HHHHHhhcceEEEEECCCCee-ecHHHHHHHHhh----cCCCeEEEEECcccccc
Confidence 345778999999999875211 111222333221 47999999999998654
No 347
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=93.55 E-value=0.11 Score=37.39 Aligned_cols=46 Identities=17% Similarity=0.270 Sum_probs=31.1
Q ss_pred HhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCC
Q 044598 7 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 57 (110)
Q Consensus 7 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl 57 (110)
..++-+|++++++|+.+--.++. ...+....+ .+.|+++|.||.|.
T Consensus 216 a~l~~sDgvVlvvDv~EGVmlnt-Er~ikhaiq----~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 216 ASLRLSDGVVLVVDVAEGVMLNT-ERIIKHAIQ----NRLPIVVVINKVDR 261 (971)
T ss_pred HHhhhcceEEEEEEcccCceeeH-HHHHHHHHh----ccCcEEEEEehhHH
Confidence 34778999999999875322222 223333332 36899999999995
No 348
>PF14331 ImcF-related_N: ImcF-related N-terminal domain
Probab=93.32 E-value=0.94 Score=28.94 Aligned_cols=49 Identities=20% Similarity=0.193 Sum_probs=29.0
Q ss_pred cCCEEEEEEECCCh-----h--hHH----HHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC
Q 044598 11 NTQGLIFVVDSNDR-----D--RVV----EARDELHRMLNEDELRDAVLLVFANKQDLPNA 60 (110)
Q Consensus 11 ~~~~~i~v~d~~~~-----~--~~~----~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~ 60 (110)
-.+++|+++|+.+- . .+. .....+.++...- ....|+.+|+||+|+...
T Consensus 25 PlnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~l-g~~~PVYvv~Tk~D~l~G 84 (266)
T PF14331_consen 25 PLNGVILTVSVDDLLNADEAERELEALARALRQRLEELQRTL-GVRLPVYVVFTKCDLLPG 84 (266)
T ss_pred CCCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHh-CCCCCeEeeeECCCcccC
Confidence 36899999986531 1 111 1122333332221 147999999999998654
No 349
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=92.87 E-value=1 Score=30.65 Aligned_cols=55 Identities=22% Similarity=0.213 Sum_probs=33.4
Q ss_pred CCCeEEEEeeCCCCCCCCCHH----HHHhhh---CCC------------------cccCcceEEEeeecccCCCHHHHHH
Q 044598 44 RDAVLLVFANKQDLPNAMNAA----EITDKL---GLH------------------SLRQRHWYIQSTCATSGEGLYEGLD 98 (110)
Q Consensus 44 ~~~~~iiv~nK~Dl~~~~~~~----~~~~~~---~~~------------------~~~~~~~~~~~~Sa~~~~~i~~l~~ 98 (110)
-+.|++++.+|+|+......+ ++...+ +.. .....-.|++.+|+.+|+|++-+..
T Consensus 302 L~iPfFvlvtK~Dl~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~ 381 (591)
T KOG1143|consen 302 LNIPFFVLVTKMDLVDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRT 381 (591)
T ss_pred hCCCeEEEEEeeccccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHH
Confidence 379999999999996543211 111111 100 0112346899999999999875443
No 350
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=92.26 E-value=3 Score=29.95 Aligned_cols=55 Identities=15% Similarity=0.286 Sum_probs=37.2
Q ss_pred chHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC
Q 044598 3 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60 (110)
Q Consensus 3 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~ 60 (110)
++..+|.++-+++|+|+.-... ...+....+++..-+..+...|+|.+|.|+.+.
T Consensus 440 ~msKayM~NPNAIILCIQDGSV---DAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEk 494 (980)
T KOG0447|consen 440 SISKAYMQNPNAIILCIQDGSV---DAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEK 494 (980)
T ss_pred HHHHHHhcCCCeEEEEeccCCc---chhhhhHHHHHHhcCCCCCeeEEEEeecchhhh
Confidence 5778999999999999953322 111223334444434457889999999999654
No 351
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=91.98 E-value=1.3 Score=28.62 Aligned_cols=48 Identities=8% Similarity=0.107 Sum_probs=33.2
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC
Q 044598 8 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~ 60 (110)
.+.+||.+|+|.-++ +-.+++.+. +.++.++ .+.|..+|.||.+.-.+
T Consensus 182 sl~~aD~ai~VTEPT-p~glhD~kr-~~el~~~---f~ip~~iViNr~~~g~s 229 (284)
T COG1149 182 SLKGADLAILVTEPT-PFGLHDLKR-ALELVEH---FGIPTGIVINRYNLGDS 229 (284)
T ss_pred hhccCCEEEEEecCC-ccchhHHHH-HHHHHHH---hCCceEEEEecCCCCch
Confidence 578999999999876 444555543 3333333 57999999999965433
No 352
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=91.93 E-value=0.26 Score=31.25 Aligned_cols=28 Identities=21% Similarity=0.077 Sum_probs=24.6
Q ss_pred cceEEEeeecccCCCHHHHHHHHHHHHH
Q 044598 78 RHWYIQSTCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 78 ~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
...+++..||+++.|++.+++.+.+.++
T Consensus 239 ~~~pv~~gSa~~~~G~~~ll~~~~~~~p 266 (268)
T cd04170 239 LLVPVLCGSALTNIGVRELLDALVHLLP 266 (268)
T ss_pred CEEEEEEeeCCCCcCHHHHHHHHHHhCC
Confidence 3468999999999999999999988765
No 353
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=91.43 E-value=0.36 Score=33.41 Aligned_cols=59 Identities=12% Similarity=0.027 Sum_probs=37.7
Q ss_pred CCeEEEEeeCCCCCC----CC--CHH---HHHhhhCCCcccCcceEEEeeecccCCCHHHHHHHHHHHH
Q 044598 45 DAVLLVFANKQDLPN----AM--NAA---EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 104 (110)
Q Consensus 45 ~~~~iiv~nK~Dl~~----~~--~~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 104 (110)
++|++||++|+|... .. ..+ .+.+.++. .+...+...+++|++...+++-+...|.+.+
T Consensus 196 Gipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~-~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l 263 (472)
T PF05783_consen 196 GIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRT-FCLKYGASLIYTSVKEEKNLDLLYKYILHRL 263 (472)
T ss_pred CcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHH-HHHhcCCeEEEeeccccccHHHHHHHHHHHh
Confidence 469999999999622 11 111 11111110 0134566788999999999998888877665
No 354
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=91.28 E-value=1.2 Score=29.96 Aligned_cols=92 Identities=12% Similarity=0.117 Sum_probs=43.9
Q ss_pred cccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCC-------CC--CCCHHH----HHhhh--CCC
Q 044598 9 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL-------PN--AMNAAE----ITDKL--GLH 73 (110)
Q Consensus 9 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl-------~~--~~~~~~----~~~~~--~~~ 73 (110)
+...|.+|++.+. .+.....++....+. .++|+.+|.+|+|. .. ....++ +.+.+ .+.
T Consensus 112 ~~~yD~fiii~s~----rf~~ndv~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~ 184 (376)
T PF05049_consen 112 FYRYDFFIIISSE----RFTENDVQLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQ 184 (376)
T ss_dssp GGG-SEEEEEESS----S--HHHHHHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHH
T ss_pred ccccCEEEEEeCC----CCchhhHHHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHH
Confidence 4567887776653 244444455444433 58999999999995 11 112222 22111 010
Q ss_pred cccCcceEEEeeeccc--CCCHHHHHHHHHHHHHhh
Q 044598 74 SLRQRHWYIQSTCATS--GEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 74 ~~~~~~~~~~~~Sa~~--~~~i~~l~~~l~~~~~~~ 107 (110)
...-...++|-+|+.+ ..++..+.+.|.+.++.+
T Consensus 185 k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~ 220 (376)
T PF05049_consen 185 KAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAH 220 (376)
T ss_dssp CTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GG
T ss_pred HcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHH
Confidence 0111234678888764 346788888888777654
No 355
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=90.37 E-value=0.49 Score=28.13 Aligned_cols=44 Identities=23% Similarity=0.323 Sum_probs=26.2
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC
Q 044598 11 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60 (110)
Q Consensus 11 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~ 60 (110)
..+.++.|+|+............+.+.++..+ +++.||+|+.+.
T Consensus 113 ~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~AD------vIvlnK~D~~~~ 156 (178)
T PF02492_consen 113 RLDSIITVVDATNFDELENIPELLREQIAFAD------VIVLNKIDLVSD 156 (178)
T ss_dssp SESEEEEEEEGTTHGGHTTHCHHHHHHHCT-S------EEEEE-GGGHHH
T ss_pred cccceeEEeccccccccccchhhhhhcchhcC------EEEEeccccCCh
Confidence 35789999999664333333334444444432 889999998543
No 356
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=90.17 E-value=2 Score=25.36 Aligned_cols=49 Identities=12% Similarity=0.152 Sum_probs=31.8
Q ss_pred HHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCC
Q 044598 6 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 59 (110)
Q Consensus 6 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~ 59 (110)
...+..||.+++++.++. .+.......+..+ +. .+.|+.+|.||+|...
T Consensus 109 ~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l-~~---~~~~~~vV~N~~~~~~ 157 (179)
T cd03110 109 IASLTGADAALLVTEPTP-SGLHDLERAVELV-RH---FGIPVGVVINKYDLND 157 (179)
T ss_pred HHHHHcCCEEEEEecCCc-ccHHHHHHHHHHH-HH---cCCCEEEEEeCCCCCc
Confidence 345688999999998763 3444444433332 22 2467889999999643
No 357
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=89.75 E-value=2.4 Score=26.99 Aligned_cols=53 Identities=26% Similarity=0.406 Sum_probs=34.2
Q ss_pred HHhcccCCEEEEEEECCChhhHHH---HHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC
Q 044598 6 RHYFQNTQGLIFVVDSNDRDRVVE---ARDELHRMLNEDELRDAVLLVFANKQDLPNA 60 (110)
Q Consensus 6 ~~~~~~~~~~i~v~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~ 60 (110)
.+.+++.+++|+|+|+...+-..+ ...-++.++++ .+...+++...|.|+...
T Consensus 76 d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~--SP~AkiF~l~hKmDLv~~ 131 (295)
T KOG3886|consen 76 DNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQN--SPEAKIFCLLHKMDLVQE 131 (295)
T ss_pred hhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhc--CCcceEEEEEeechhccc
Confidence 456778999999999875432222 22223334433 256778999999998543
No 358
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=89.57 E-value=0.55 Score=30.02 Aligned_cols=28 Identities=14% Similarity=0.108 Sum_probs=24.7
Q ss_pred cceEEEeeecccCCCHHHHHHHHHHHHH
Q 044598 78 RHWYIQSTCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 78 ~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
.-+|++..||.++.|+..+++.+...++
T Consensus 241 ~~~PV~~gSa~~~~Gi~~lld~i~~~~p 268 (270)
T cd01886 241 KIVPVLCGSAFKNKGVQPLLDAVVDYLP 268 (270)
T ss_pred cEEEEEeCcCCCCcCHHHHHHHHHHhcC
Confidence 4469999999999999999999988765
No 359
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=87.22 E-value=3.8 Score=23.25 Aligned_cols=50 Identities=16% Similarity=0.284 Sum_probs=31.1
Q ss_pred HHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCC
Q 044598 5 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 57 (110)
Q Consensus 5 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl 57 (110)
....+..||.++++++.+. .+.......+..+... ....++.++.|+++.
T Consensus 60 ~~~~l~~aD~vviv~~~~~-~s~~~~~~~l~~l~~~--~~~~~~~lVvN~~~~ 109 (139)
T cd02038 60 VLDFFLAADEVIVVTTPEP-TSITDAYALIKKLAKQ--LRVLNFRVVVNRAES 109 (139)
T ss_pred HHHHHHhCCeEEEEcCCCh-hHHHHHHHHHHHHHHh--cCCCCEEEEEeCCCC
Confidence 3456889999999998863 3444333333333221 134567899999874
No 360
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=86.56 E-value=0.94 Score=28.92 Aligned_cols=29 Identities=21% Similarity=-0.003 Sum_probs=25.2
Q ss_pred cceEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 78 RHWYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 78 ~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
.-+|++..||.++.|+..+++.+.+.++.
T Consensus 238 ~~~Pv~~gsa~~~~Gv~~Lld~i~~~~P~ 266 (267)
T cd04169 238 ELTPVFFGSALNNFGVQELLDALVDLAPA 266 (267)
T ss_pred CEEEEEecccccCcCHHHHHHHHHHHCCC
Confidence 34699999999999999999999987753
No 361
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=84.68 E-value=4.4 Score=21.56 Aligned_cols=21 Identities=10% Similarity=0.104 Sum_probs=15.2
Q ss_pred HHHhcccCCEEEEEEECCChh
Q 044598 5 WRHYFQNTQGLIFVVDSNDRD 25 (110)
Q Consensus 5 ~~~~~~~~~~~i~v~d~~~~~ 25 (110)
++.-+.+||++|++.|..+..
T Consensus 42 l~~~i~~aD~VIv~t~~vsH~ 62 (97)
T PF10087_consen 42 LPSKIKKADLVIVFTDYVSHN 62 (97)
T ss_pred HHHhcCCCCEEEEEeCCcChH
Confidence 456677888888888876543
No 362
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=84.41 E-value=4.9 Score=21.93 Aligned_cols=45 Identities=9% Similarity=0.025 Sum_probs=27.1
Q ss_pred HhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCC
Q 044598 7 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 57 (110)
Q Consensus 7 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl 57 (110)
..+++||++|.++|...+.+-.... +--... .++|++++.+....
T Consensus 57 ~~i~~~D~via~l~~~~~d~Gt~~E--lG~A~a----lgkpv~~~~~d~~~ 101 (113)
T PF05014_consen 57 EGIRECDIVIANLDGFRPDSGTAFE--LGYAYA----LGKPVILLTEDDRP 101 (113)
T ss_dssp HHHHHSSEEEEEECSSS--HHHHHH--HHHHHH----TTSEEEEEECCCCT
T ss_pred HHHHHCCEEEEECCCCCCCCcHHHH--HHHHHH----CCCEEEEEEcCCcc
Confidence 3467899999999985443322221 111111 47899999877653
No 363
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=84.07 E-value=3.3 Score=27.54 Aligned_cols=21 Identities=38% Similarity=0.479 Sum_probs=13.6
Q ss_pred EEEeeCCCCCCCCCHHHHHhh
Q 044598 49 LVFANKQDLPNAMNAAEITDK 69 (110)
Q Consensus 49 iiv~nK~Dl~~~~~~~~~~~~ 69 (110)
+|++||+|+.+....+.+...
T Consensus 177 ~IvlnK~Dl~~~~~l~~~~~~ 197 (341)
T TIGR02475 177 LVILNKADLLDAAGLARVRAE 197 (341)
T ss_pred EEEEeccccCCHHHHHHHHHH
Confidence 889999998655433333333
No 364
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=83.71 E-value=2.8 Score=28.28 Aligned_cols=41 Identities=12% Similarity=0.018 Sum_probs=24.6
Q ss_pred CCCeEEEEeeCCCCCCCCC---HHHHHhhhCCCcccCcceEEEeeeccc
Q 044598 44 RDAVLLVFANKQDLPNAMN---AAEITDKLGLHSLRQRHWYIQSTCATS 89 (110)
Q Consensus 44 ~~~~~iiv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 89 (110)
..+|+++++||.|...... ...+.+.. .....+++++||.-
T Consensus 205 t~KP~lyvaN~~e~~~~~~n~~~~~i~~~~-----~~~~~~vV~~sA~~ 248 (372)
T COG0012 205 TAKPMLYVANVSEDDLANLNEYVKRLKELA-----AKENAEVVPVSAAI 248 (372)
T ss_pred hcCCeEEEEECCcccccchhHHHHHHHHHh-----hhcCCcEEEeeHHH
Confidence 3689999999999765432 22222221 12234677888753
No 365
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=83.57 E-value=0.39 Score=32.67 Aligned_cols=53 Identities=19% Similarity=0.188 Sum_probs=31.7
Q ss_pred CCeEEEEeeCCCCCCCCCH----HHHHhh----hCCCccc-CcceEEEeeecccCCCHHHHH
Q 044598 45 DAVLLVFANKQDLPNAMNA----AEITDK----LGLHSLR-QRHWYIQSTCATSGEGLYEGL 97 (110)
Q Consensus 45 ~~~~iiv~nK~Dl~~~~~~----~~~~~~----~~~~~~~-~~~~~~~~~Sa~~~~~i~~l~ 97 (110)
-.-.+++.||+|.+..... .+..+. +....++ .....++++|..+|.++.+..
T Consensus 217 v~~lVv~vNKMddPtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~ 278 (501)
T KOG0459|consen 217 VKHLIVLINKMDDPTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRT 278 (501)
T ss_pred cceEEEEEEeccCCccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcc
Confidence 3568999999998665421 122221 1111111 234568899999999987654
No 366
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=83.31 E-value=3.6 Score=26.73 Aligned_cols=51 Identities=14% Similarity=-0.053 Sum_probs=33.8
Q ss_pred CCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEEeeecccCCCHHHHHHHHHHHH
Q 044598 44 RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 104 (110)
Q Consensus 44 ~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 104 (110)
..+|.+.+.||+|-.. .+++.-. .+....+++||.++=|++++++-+.+.+
T Consensus 230 ~yVp~iyvLNkIdsIS---iEELdii-------~~iphavpISA~~~wn~d~lL~~mweyL 280 (358)
T KOG1487|consen 230 IYVPCIYVLNKIDSIS---IEELDII-------YTIPHAVPISAHTGWNFDKLLEKMWEYL 280 (358)
T ss_pred eeeeeeeeecccceee---eecccee-------eeccceeecccccccchHHHHHHHhhcc
Confidence 3589999999999532 2221111 1112345789999999999988887765
No 367
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=83.31 E-value=9.2 Score=29.91 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=30.1
Q ss_pred cCCEEEEEEECCCh-----hhH----HHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC
Q 044598 11 NTQGLIFVVDSNDR-----DRV----VEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60 (110)
Q Consensus 11 ~~~~~i~v~d~~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~ 60 (110)
-.+++|+++|..+- ... ......+.++...-. ...|+.+++||+|+...
T Consensus 201 plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg-~~~PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 201 PLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLG-ARFPVYLVLTKADLLAG 258 (1169)
T ss_pred CCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecchhhcC
Confidence 48999999997542 111 122233333332212 47999999999998644
No 368
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=81.94 E-value=6.2 Score=21.29 Aligned_cols=47 Identities=11% Similarity=0.123 Sum_probs=26.3
Q ss_pred HHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCC-CCeEEEEeeC
Q 044598 6 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR-DAVLLVFANK 54 (110)
Q Consensus 6 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiv~nK 54 (110)
...+..||.++++++++. .+.......+..+.+. ... ...+.+|+|+
T Consensus 59 ~~~l~~aD~vlvvv~~~~-~s~~~~~~~~~~l~~~-~~~~~~~~~lVvNr 106 (106)
T cd03111 59 LAALDQADRVFLVTQQDL-PSIRNAKRLLELLRVL-DYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHcCeEEEEecCCh-HHHHHHHHHHHHHHHc-CCCCcCceEEEecC
Confidence 446778899999988763 3444444433333222 212 3456677765
No 369
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=81.42 E-value=12 Score=25.84 Aligned_cols=57 Identities=19% Similarity=0.056 Sum_probs=34.0
Q ss_pred CCCeEEEEeeCCCCCCCCCHHH-HHhh---hCCCc---------------------ccCcceEEEeeecccCCCHHHHHH
Q 044598 44 RDAVLLVFANKQDLPNAMNAAE-ITDK---LGLHS---------------------LRQRHWYIQSTCATSGEGLYEGLD 98 (110)
Q Consensus 44 ~~~~~iiv~nK~Dl~~~~~~~~-~~~~---~~~~~---------------------~~~~~~~~~~~Sa~~~~~i~~l~~ 98 (110)
.+.|+++|.+|+|+..+.-.++ ++.. +.-+. ...+-+++|.+|-.+|.|++-+..
T Consensus 272 L~VPVfvVVTKIDMCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkm 351 (641)
T KOG0463|consen 272 LHVPVFVVVTKIDMCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKM 351 (641)
T ss_pred hcCcEEEEEEeeccCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHH
Confidence 3689999999999865432222 1111 11000 011346899999999999885544
Q ss_pred HH
Q 044598 99 WL 100 (110)
Q Consensus 99 ~l 100 (110)
.+
T Consensus 352 FL 353 (641)
T KOG0463|consen 352 FL 353 (641)
T ss_pred HH
Confidence 43
No 370
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=81.23 E-value=10 Score=27.10 Aligned_cols=57 Identities=18% Similarity=0.066 Sum_probs=34.9
Q ss_pred CCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEE--eeecccCCCHHHHHHHHHHHHH
Q 044598 44 RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQ--STCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 44 ~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
.+.|++++.||.|.......+.+.+.+. ..++++. ..=++-|+|-.++-+.+.+.+.
T Consensus 371 FGvPvVVAINKFd~DTe~Ei~~I~~~c~-----e~Gv~va~~~~~~~Gg~Gai~LA~aVveA~~ 429 (557)
T PRK13505 371 FGVPVVVAINKFVTDTDAEIAALKELCE-----ELGVEVALSEVWAKGGEGGVELAEKVVELIE 429 (557)
T ss_pred cCCCEEEEEeCCCCCCHHHHHHHHHHHH-----HcCCCEEEecccccCCcchHHHHHHHHHHHh
Confidence 5899999999999754322333334331 2223333 3346777887777777776655
No 371
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=81.06 E-value=9.8 Score=24.72 Aligned_cols=50 Identities=14% Similarity=-0.023 Sum_probs=34.5
Q ss_pred CCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEEeeecccCCCHHHHHHHHHHHH
Q 044598 45 DAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 104 (110)
Q Consensus 45 ~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 104 (110)
..+.+.|.||+|.. +.+++...-+. + ..+.+|+.-+.|++.+++.+.+.+
T Consensus 238 Y~~ClYvYnKID~v---s~eevdrlAr~------P-nsvViSC~m~lnld~lle~iWe~l 287 (364)
T KOG1486|consen 238 YIKCLYVYNKIDQV---SIEEVDRLARQ------P-NSVVISCNMKLNLDRLLERIWEEL 287 (364)
T ss_pred EEEEEEEeecccee---cHHHHHHHhcC------C-CcEEEEeccccCHHHHHHHHHHHh
Confidence 36889999999953 44444332221 2 233678989999999999988876
No 372
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=80.47 E-value=4 Score=30.28 Aligned_cols=46 Identities=15% Similarity=0.112 Sum_probs=28.5
Q ss_pred hHHHhcccCCEEEEEEECCC---hhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCC
Q 044598 4 LWRHYFQNTQGLIFVVDSND---RDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 57 (110)
Q Consensus 4 ~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl 57 (110)
...+..+-||+++.++|..+ .++..-.+.- +..+...++|.||+|.
T Consensus 88 evssas~l~d~alvlvdvvegv~~qt~~vlrq~--------~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 88 EVSSASRLSDGALVLVDVVEGVCSQTYAVLRQA--------WIEGLKPILVINKIDR 136 (887)
T ss_pred hhhhhhhhcCCcEEEEeeccccchhHHHHHHHH--------HHccCceEEEEehhhh
Confidence 34455667899999999864 2222222211 1134567999999993
No 373
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=79.76 E-value=2.7 Score=27.19 Aligned_cols=44 Identities=9% Similarity=0.174 Sum_probs=26.3
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCC
Q 044598 11 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 59 (110)
Q Consensus 11 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~ 59 (110)
+.|++||+++++.. .+...+....+.+. ...++|-|..|+|...
T Consensus 113 RVH~cLYfI~pt~~-~L~~~Di~~mk~Ls----~~vNvIPvIaKaD~lt 156 (281)
T PF00735_consen 113 RVHACLYFIPPTGH-GLKPLDIEFMKRLS----KRVNVIPVIAKADTLT 156 (281)
T ss_dssp -EEEEEEEE-TTSS-SS-HHHHHHHHHHT----TTSEEEEEESTGGGS-
T ss_pred CcceEEEEEcCCCc-cchHHHHHHHHHhc----ccccEEeEEecccccC
Confidence 57899999998742 33333322222232 3578999999999743
No 374
>PRK14974 cell division protein FtsY; Provisional
Probab=79.39 E-value=14 Score=24.64 Aligned_cols=43 Identities=16% Similarity=-0.017 Sum_probs=23.5
Q ss_pred eEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEEeeecccCCCHHHHHH
Q 044598 47 VLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 98 (110)
Q Consensus 47 ~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 98 (110)
.--+++||.|.....+. .+.-.. ..+.|+..++ +|++++++..
T Consensus 281 ~~giIlTKlD~~~~~G~-~ls~~~------~~~~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 281 IDGVILTKVDADAKGGA-ALSIAY------VIGKPILFLG--VGQGYDDLIP 323 (336)
T ss_pred CCEEEEeeecCCCCccH-HHHHHH------HHCcCEEEEe--CCCChhhccc
Confidence 35678899997543321 111111 1123555555 8999988764
No 375
>PTZ00258 GTP-binding protein; Provisional
Probab=78.54 E-value=2.8 Score=28.46 Aligned_cols=15 Identities=20% Similarity=0.313 Sum_probs=12.9
Q ss_pred hcccCCEEEEEEECC
Q 044598 8 YFQNTQGLIFVVDSN 22 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~ 22 (110)
.+++||++++|+|+.
T Consensus 112 ~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 112 HIRAVDGIYHVVRAF 126 (390)
T ss_pred HHHHCCEEEEEEeCC
Confidence 467899999999984
No 376
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=78.30 E-value=3.3 Score=24.51 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=19.4
Q ss_pred cceEEEeeecccCCCHHHHHHHHHH
Q 044598 78 RHWYIQSTCATSGEGLYEGLDWLSN 102 (110)
Q Consensus 78 ~~~~~~~~Sa~~~~~i~~l~~~l~~ 102 (110)
.+++++.+|+++++|++++.+.+..
T Consensus 11 ~gy~v~~~S~~~~~g~~~l~~~l~~ 35 (161)
T PF03193_consen 11 LGYPVFFISAKTGEGIEELKELLKG 35 (161)
T ss_dssp TTSEEEE-BTTTTTTHHHHHHHHTT
T ss_pred cCCcEEEEeCCCCcCHHHHHHHhcC
Confidence 4557889999999999998887754
No 377
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=77.14 E-value=4.1 Score=26.82 Aligned_cols=42 Identities=17% Similarity=0.199 Sum_probs=22.6
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCC
Q 044598 12 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 59 (110)
Q Consensus 12 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~ 59 (110)
.+.++.|+|+................+... =+++.||+|+.+
T Consensus 123 l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~A------D~IvlnK~Dl~~ 164 (318)
T PRK11537 123 LDGVIALVDAVHADEQMNQFTIAQSQVGYA------DRILLTKTDVAG 164 (318)
T ss_pred eccEEEEEEhhhhhhhccccHHHHHHHHhC------CEEEEeccccCC
Confidence 477999999864322111011111222221 278899999864
No 378
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=75.82 E-value=12 Score=27.33 Aligned_cols=51 Identities=18% Similarity=0.212 Sum_probs=31.8
Q ss_pred HhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCC
Q 044598 7 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 62 (110)
Q Consensus 7 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~ 62 (110)
..++-.|++++|+|+..- ...+...-+..+ .. .++|.+...||+|.-++..
T Consensus 123 RALrVlDGaVlvl~aV~G-VqsQt~tV~rQ~-~r---y~vP~i~FiNKmDRmGa~~ 173 (721)
T KOG0465|consen 123 RALRVLDGAVLVLDAVAG-VESQTETVWRQM-KR---YNVPRICFINKMDRMGASP 173 (721)
T ss_pred hhhhhccCeEEEEEcccc-eehhhHHHHHHH-Hh---cCCCeEEEEehhhhcCCCh
Confidence 346678999999997642 111122222222 11 5899999999999866543
No 379
>PF08438 MMR_HSR1_C: GTPase of unknown function C-terminal; InterPro: IPR013646 This domain is found at the C terminus of IPR002917 from INTERPRO in archaeal and eukaryotic GTP-binding proteins. ; PDB: 1WXQ_A.
Probab=71.75 E-value=1.8 Score=23.88 Aligned_cols=9 Identities=67% Similarity=0.848 Sum_probs=4.6
Q ss_pred EeeCCCCCC
Q 044598 51 FANKQDLPN 59 (110)
Q Consensus 51 v~nK~Dl~~ 59 (110)
++||+|++.
T Consensus 1 AaNK~D~~~ 9 (109)
T PF08438_consen 1 AANKADLPA 9 (109)
T ss_dssp EEE-GGG-S
T ss_pred CCccccccc
Confidence 468888643
No 380
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=71.19 E-value=22 Score=22.02 Aligned_cols=53 Identities=9% Similarity=0.063 Sum_probs=32.1
Q ss_pred hHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCC
Q 044598 4 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 58 (110)
Q Consensus 4 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 58 (110)
+....+..||.+++++.++ ..++......+.++.... ....+.-++.|+.|..
T Consensus 129 ~~~~~l~~ad~vii~~~~~-~~s~~~~~~~~~~l~~~~-~~~~~~~iv~n~~~~~ 181 (246)
T TIGR03371 129 ITRQALAAADLVLVVVNAD-AACYATLHQQALALFAGS-GPRIGPHFLINQFDPA 181 (246)
T ss_pred HHHHHHHhCCeEEEEeCCC-HHHHHHHHHHHHHHhhcc-cccccceEEeeccCcc
Confidence 4456678899999999875 334444432333333211 1234577899999864
No 381
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=69.76 E-value=27 Score=22.52 Aligned_cols=72 Identities=13% Similarity=0.090 Sum_probs=38.6
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCH-HHHHhhhCCCcccCcceEEEeeeccc
Q 044598 11 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRQRHWYIQSTCATS 89 (110)
Q Consensus 11 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~ 89 (110)
..|.+++|+|++.. .+.. .....+.+. -.+.-+++||.|-....+. -.+.... +.|+..++ +
T Consensus 190 ~~~~~~LVl~a~~~--~~~~-~~~~~f~~~----~~~~g~IlTKlDe~~~~G~~l~~~~~~--------~~Pi~~~~--~ 252 (272)
T TIGR00064 190 APDEVLLVLDATTG--QNAL-EQAKVFNEA----VGLTGIILTKLDGTAKGGIILSIAYEL--------KLPIKFIG--V 252 (272)
T ss_pred CCceEEEEEECCCC--HHHH-HHHHHHHhh----CCCCEEEEEccCCCCCccHHHHHHHHH--------CcCEEEEe--C
Confidence 37889999998742 2221 122222211 1246788999997544321 1112222 23455555 8
Q ss_pred CCCHHHHHHH
Q 044598 90 GEGLYEGLDW 99 (110)
Q Consensus 90 ~~~i~~l~~~ 99 (110)
|++++++..+
T Consensus 253 Gq~~~dl~~~ 262 (272)
T TIGR00064 253 GEKIDDLAPF 262 (272)
T ss_pred CCChHhCccC
Confidence 8888776543
No 382
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=68.49 E-value=21 Score=20.73 Aligned_cols=50 Identities=10% Similarity=-0.021 Sum_probs=30.5
Q ss_pred HHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCC
Q 044598 6 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 59 (110)
Q Consensus 6 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~ 59 (110)
...+..+|.+|+++++.. .+.......+..+ +.. ......++.|+.+...
T Consensus 79 ~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~-~~~--~~~~~~iv~N~~~~~~ 128 (179)
T cd02036 79 ITAIAPADEALLVTTPEI-SSLRDADRVKGLL-EAL--GIKVVGVIVNRVRPDM 128 (179)
T ss_pred HHHHHhCCcEEEEeCCCc-chHHHHHHHHHHH-HHc--CCceEEEEEeCCcccc
Confidence 345678999999998763 3444443333322 221 2345778999998654
No 383
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=67.25 E-value=28 Score=22.66 Aligned_cols=47 Identities=17% Similarity=0.255 Sum_probs=30.4
Q ss_pred ccCCEEEEEEECCChhhHHHHHHHH-HHH-hcCCCCCCCeEEEEeeCCCC
Q 044598 10 QNTQGLIFVVDSNDRDRVVEARDEL-HRM-LNEDELRDAVLLVFANKQDL 57 (110)
Q Consensus 10 ~~~~~~i~v~d~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~iiv~nK~Dl 57 (110)
+.+++++++++.+..++.++....+ .++ +.+ ...+.-+++++.|.|.
T Consensus 62 t~~QiaVv~vpSt~g~~IE~ya~rlfd~W~lG~-k~~~dGvLLlVa~~dr 110 (271)
T COG1512 62 TGAQIAVVTVPSTGGETIEQYATRLFDKWKLGD-KAQDDGVLLLVAMNDR 110 (271)
T ss_pred cCCeEEEEEecCCCCCCHHHHHHHHHHhcCCCc-cccCCCEEEEEEcCCC
Confidence 3678899999988866666654333 222 221 1235568999999993
No 384
>COG0431 Predicted flavoprotein [General function prediction only]
Probab=66.20 E-value=11 Score=22.74 Aligned_cols=53 Identities=15% Similarity=0.177 Sum_probs=33.8
Q ss_pred HHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCC
Q 044598 5 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 58 (110)
Q Consensus 5 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 58 (110)
|..-++.+|++|++..--+ .++....+...+++......++|+.++++..-..
T Consensus 61 ~~~~i~~aD~li~~tPeYn-~s~pg~lKnaiD~l~~~~~~~Kpv~~~~~s~g~~ 113 (184)
T COG0431 61 LREAIAAADGLIIATPEYN-GSYPGALKNAIDWLSREALGGKPVLLLGTSGGGA 113 (184)
T ss_pred HHHHHHhCCEEEEECCccC-CCCCHHHHHHHHhCCHhHhCCCcEEEEecCCCch
Confidence 5566889999999886543 2333333334444444445689999888776643
No 385
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=64.76 E-value=13 Score=25.19 Aligned_cols=15 Identities=13% Similarity=0.284 Sum_probs=12.8
Q ss_pred hcccCCEEEEEEECC
Q 044598 8 YFQNTQGLIFVVDSN 22 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~ 22 (110)
.+++||++++|+|+.
T Consensus 93 ~i~~aD~li~VVd~f 107 (364)
T PRK09601 93 NIREVDAIVHVVRCF 107 (364)
T ss_pred HHHhCCEEEEEEeCC
Confidence 467899999999985
No 386
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=64.46 E-value=23 Score=22.56 Aligned_cols=47 Identities=4% Similarity=-0.042 Sum_probs=25.5
Q ss_pred cCCEEEEEEECCChh-hHH--HHHHHHHHHhcCCCCCCCeEEEEeeCCCCCC
Q 044598 11 NTQGLIFVVDSNDRD-RVV--EARDELHRMLNEDELRDAVLLVFANKQDLPN 59 (110)
Q Consensus 11 ~~~~~i~v~d~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~ 59 (110)
..++++||..++... ... .....+.+.+.. . --.++++|+||+|...
T Consensus 114 ~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~-~-i~~~~ivV~T~~d~~~ 163 (249)
T cd01853 114 TPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGP-S-IWRNAIVVLTHAASSP 163 (249)
T ss_pred CCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhCh-h-hHhCEEEEEeCCccCC
Confidence 578888887554321 111 222333333221 0 1256999999999753
No 387
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=63.81 E-value=20 Score=21.20 Aligned_cols=47 Identities=9% Similarity=0.012 Sum_probs=27.8
Q ss_pred HhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeC
Q 044598 7 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANK 54 (110)
Q Consensus 7 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK 54 (110)
.-+..||++|+....-...-....+.++.. +....+.++|++++.+-
T Consensus 64 ~~i~~AD~iIi~tP~Y~~s~~~~LKn~lD~-~~~~~l~~K~~~~v~~~ 110 (174)
T TIGR03566 64 QAIESADLLVVGSPVYRGSYTGLFKHLFDL-VDPNALIGKPVLLAATG 110 (174)
T ss_pred HHHHHCCEEEEECCcCcCcCcHHHHHHHHh-cCHhHhCCCEEEEEEec
Confidence 457789999998865432212233334433 22223568999888874
No 388
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=63.19 E-value=9 Score=27.89 Aligned_cols=32 Identities=13% Similarity=0.143 Sum_probs=27.7
Q ss_pred cCcceEEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 76 RQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 76 ~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
.....|++..||.++.|+..+++++.+++++-
T Consensus 279 ~r~fvPVl~GSAlKNkGVQPlLDAVvdYLPsP 310 (721)
T KOG0465|consen 279 KRSFVPVLCGSALKNKGVQPLLDAVVDYLPSP 310 (721)
T ss_pred hcceeeEEechhhcccCcchHHHHHHHhCCCh
Confidence 34567999999999999999999999998753
No 389
>KOG1249 consensus Predicted GTPases [General function prediction only]
Probab=62.75 E-value=12 Score=26.77 Aligned_cols=86 Identities=21% Similarity=0.082 Sum_probs=45.3
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCH----HHHHhhhCCCcc--------cC-
Q 044598 11 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AEITDKLGLHSL--------RQ- 77 (110)
Q Consensus 11 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~----~~~~~~~~~~~~--------~~- 77 (110)
+--++..|+|.++... .....+...+ .....++.+||+|+...... ........-... .+
T Consensus 110 ~~~~~~~vvd~~d~p~--~i~p~~~~~v-----~~~~~~v~~n~vdl~p~d~~~~~c~rc~~l~~~~~vk~~~~en~~p~ 182 (572)
T KOG1249|consen 110 NPALARKVVDLSDEPC--SIDPLLTNDV-----GSPRLFVDGNKVDLLPKDSRPGYCQRCHSLLHYGMIKAGGGENLNPD 182 (572)
T ss_pred cccceEEeeecccCcc--ccccchhhcc-----cCCceEeeccccccccccccchHHHHHHhhcccceeecccccCCCcc
Confidence 3345677888765432 2222222222 12337999999999654321 111111100000 00
Q ss_pred -cceEEEeeecccCCCHHHHHHHHHHH
Q 044598 78 -RHWYIQSTCATSGEGLYEGLDWLSNN 103 (110)
Q Consensus 78 -~~~~~~~~Sa~~~~~i~~l~~~l~~~ 103 (110)
.......++++++.|++++.-.+...
T Consensus 183 ~~f~~~~~~r~ktgyg~eeLI~~lvd~ 209 (572)
T KOG1249|consen 183 FDFDHVDLIRAKTGYGIEELIVMLVDI 209 (572)
T ss_pred cchhhhhhhhhhhcccHHHHHHHhhhe
Confidence 11235578899999999998877654
No 390
>PRK13556 azoreductase; Provisional
Probab=62.26 E-value=29 Score=21.21 Aligned_cols=48 Identities=6% Similarity=0.081 Sum_probs=30.3
Q ss_pred HhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCC------------CCCCCeEEEEeeC
Q 044598 7 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNED------------ELRDAVLLVFANK 54 (110)
Q Consensus 7 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~iiv~nK 54 (110)
.-+..||.+|++...-.-.-....+.|+..+.... -+.+++++++.+-
T Consensus 85 ~~l~~AD~iVi~~P~yn~~~Pa~LK~~iD~v~~~g~tf~~~~~g~~gll~~K~~~vi~ts 144 (208)
T PRK13556 85 NQFLEADKVVFAFPLWNFTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKVALLNAR 144 (208)
T ss_pred HHHHHCCEEEEeccccccCCcHHHHHHHHHHhcCCceeecCCCCCccccCCCEEEEEEeC
Confidence 34778999999998754332344556676665431 1346788777663
No 391
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=61.13 E-value=35 Score=20.70 Aligned_cols=89 Identities=9% Similarity=0.048 Sum_probs=48.0
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCC--CCCHHHHHhhhCCCcccCcceEEEeeecc
Q 044598 11 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN--AMNAAEITDKLGLHSLRQRHWYIQSTCAT 88 (110)
Q Consensus 11 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 88 (110)
+.|.++|++|.....++......+..+-.. -..++-.+++ +-....+ .....++... ......+++.+.-.
T Consensus 64 rIDlIVFvinl~sk~SL~~ve~SL~~vd~~-fflGKVCfl~-t~a~~~~~~sv~~~~V~kl-----a~~y~~plL~~~le 136 (176)
T PF11111_consen 64 RIDLIVFVINLHSKYSLQSVEASLSHVDPS-FFLGKVCFLA-TNAGRESHCSVHPNEVRKL-----AATYNSPLLFADLE 136 (176)
T ss_pred eeEEEEEEEecCCcccHHHHHHHHhhCChh-hhccceEEEE-cCCCcccccccCHHHHHHH-----HHHhCCCEEEeecc
Confidence 578999999998877776655444332111 1123444444 4333322 2223333222 11234466666666
Q ss_pred cCCCHHHHHHHHHHHHHh
Q 044598 89 SGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 89 ~~~~i~~l~~~l~~~~~~ 106 (110)
+.++...+-+.+.+.+.-
T Consensus 137 ~~~~~~~lAqRLL~~lqi 154 (176)
T PF11111_consen 137 NEEGRTSLAQRLLRMLQI 154 (176)
T ss_pred cchHHHHHHHHHHHHHHH
Confidence 777777777777776643
No 392
>PRK00871 glutathione-regulated potassium-efflux system ancillary protein KefF; Provisional
Probab=60.91 E-value=34 Score=20.59 Aligned_cols=51 Identities=8% Similarity=0.002 Sum_probs=32.8
Q ss_pred HHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCC--------CCCCCeEEEEeeCCC
Q 044598 6 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNED--------ELRDAVLLVFANKQD 56 (110)
Q Consensus 6 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~iiv~nK~D 56 (110)
...+..||.+|+.+..---....-.+.|+.+++... .+.+++++++.+=..
T Consensus 50 q~~l~~aD~iV~~fP~~w~~~Pa~lK~wiD~V~~~g~ay~~~g~~l~gk~~~~~~t~G~ 108 (176)
T PRK00871 50 QEALSRADLIVWQHPMQWYSIPPLLKLWIDKVLSHGWAYGHGGTALHGKHLLWAVTTGG 108 (176)
T ss_pred HHHHHhCCEEEEEcChhhccccHHHHHHHHHHhhCCccccCCCCCcCCCEEEEEEeCCC
Confidence 345788999999998754333445567787776531 234677766665544
No 393
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=60.85 E-value=46 Score=22.07 Aligned_cols=71 Identities=15% Similarity=0.127 Sum_probs=36.6
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCH-HHHHhhhCCCcccCcceEEEeeeccc
Q 044598 11 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRQRHWYIQSTCATS 89 (110)
Q Consensus 11 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~ 89 (110)
..+..++|+|++.. .+... ......+. -.+.-+|.||.|-....+. -.+.... +.|+..++ +
T Consensus 232 ~p~~~~LVl~a~~g--~~~~~-~a~~f~~~----~~~~giIlTKlD~t~~~G~~l~~~~~~--------~~Pi~~v~--~ 294 (318)
T PRK10416 232 APHEVLLVLDATTG--QNALS-QAKAFHEA----VGLTGIILTKLDGTAKGGVVFAIADEL--------GIPIKFIG--V 294 (318)
T ss_pred CCceEEEEEECCCC--hHHHH-HHHHHHhh----CCCCEEEEECCCCCCCccHHHHHHHHH--------CCCEEEEe--C
Confidence 35678899998742 12211 11222111 1345789999995433221 1111111 33555666 8
Q ss_pred CCCHHHHHH
Q 044598 90 GEGLYEGLD 98 (110)
Q Consensus 90 ~~~i~~l~~ 98 (110)
|++++++..
T Consensus 295 Gq~~~Dl~~ 303 (318)
T PRK10416 295 GEGIDDLQP 303 (318)
T ss_pred CCChhhCcc
Confidence 898877653
No 394
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=60.62 E-value=31 Score=19.93 Aligned_cols=16 Identities=6% Similarity=0.069 Sum_probs=11.3
Q ss_pred HhcccCCEEEEEEECC
Q 044598 7 HYFQNTQGLIFVVDSN 22 (110)
Q Consensus 7 ~~~~~~~~~i~v~d~~ 22 (110)
.++..||.++++..+.
T Consensus 108 ~~~~~Ad~~ivv~tpe 123 (148)
T cd03114 108 DIASMADTTVVVMAPG 123 (148)
T ss_pred hHHHhCCEEEEEECCC
Confidence 3667778788777655
No 395
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=59.64 E-value=36 Score=20.48 Aligned_cols=47 Identities=17% Similarity=0.261 Sum_probs=26.7
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCC
Q 044598 8 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 58 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 58 (110)
..+.+|.+|+|+++... +.......+..+ +.. .....-+|.||.|..
T Consensus 147 ~~~~~D~vilV~~~~~~-~~~~~~~~~~~l-~~~--~~~~~gvVlN~~~~~ 193 (204)
T TIGR01007 147 IARACDASILVTDAGEI-KKRDVQKAKEQL-EQT--GSNFLGVVLNKVDIS 193 (204)
T ss_pred HHHhCCeEEEEEECCCC-CHHHHHHHHHHH-HhC--CCCEEEEEEeCcccc
Confidence 34568999999987532 333333322222 221 224567888998864
No 396
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.86 E-value=11 Score=24.37 Aligned_cols=42 Identities=24% Similarity=0.394 Sum_probs=26.2
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHhcCCCCCC-CeEEEEeeCCCCC
Q 044598 13 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRD-AVLLVFANKQDLP 58 (110)
Q Consensus 13 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~iiv~nK~Dl~ 58 (110)
.++++++|.+....+.....|+. +.+... --++.++||.|..
T Consensus 80 ~a~vmvfdlse~s~l~alqdwl~----htdinsfdillcignkvdrv 122 (418)
T KOG4273|consen 80 QAFVMVFDLSEKSGLDALQDWLP----HTDINSFDILLCIGNKVDRV 122 (418)
T ss_pred eeEEEEEeccchhhhHHHHhhcc----ccccccchhheecccccccc
Confidence 46778899887655655555543 222222 2368899999974
No 397
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=58.15 E-value=29 Score=21.01 Aligned_cols=47 Identities=13% Similarity=0.155 Sum_probs=23.6
Q ss_pred hHHHhcccCCEEEEEEECC---ChhhHHHHH-HHHHHHhcCCCCCCCeEEEEe
Q 044598 4 LWRHYFQNTQGLIFVVDSN---DRDRVVEAR-DELHRMLNEDELRDAVLLVFA 52 (110)
Q Consensus 4 ~~~~~~~~~~~~i~v~d~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~ 52 (110)
....++.+.+.-++++|+. +++.+.... ..+..+. . ..+++|++++-
T Consensus 50 ~~a~~ia~~~a~~~~ld~~~N~~~~~~~~~~~~fv~~iR-~-~hP~tPIllv~ 100 (178)
T PF14606_consen 50 EVADLIAEIDADLIVLDCGPNMSPEEFRERLDGFVKTIR-E-AHPDTPILLVS 100 (178)
T ss_dssp HHHHHHHHS--SEEEEEESHHCCTTTHHHHHHHHHHHHH-T-T-SSS-EEEEE
T ss_pred HHHHHHhcCCCCEEEEEeecCCCHHHHHHHHHHHHHHHH-H-hCCCCCEEEEe
Confidence 4455666677777777754 233343333 3344433 3 23678988875
No 398
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=57.55 E-value=53 Score=21.90 Aligned_cols=46 Identities=11% Similarity=0.112 Sum_probs=25.4
Q ss_pred cCCEEEEEEECCC--hhhH-HHHHHHHHHHhcCCCCCCCeEEEEeeCCCCC
Q 044598 11 NTQGLIFVVDSND--RDRV-VEARDELHRMLNEDELRDAVLLVFANKQDLP 58 (110)
Q Consensus 11 ~~~~~i~v~d~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 58 (110)
+.|++|||...+. .... ......+...... . --.+.++++|+.|..
T Consensus 118 g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~-~-iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 118 TIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGK-D-IWRKSLVVLTHAQFS 166 (313)
T ss_pred CCCEEEEEeccCcccCCHHHHHHHHHHHHHhhh-h-hhccEEEEEECCccC
Confidence 6899999965432 1111 1222333333321 1 125689999999965
No 399
>PRK13555 azoreductase; Provisional
Probab=56.33 E-value=46 Score=20.58 Aligned_cols=48 Identities=6% Similarity=0.055 Sum_probs=30.6
Q ss_pred HhcccCCEEEEEEECCChhhHHHHHHHHHHHhcC------------CCCCCCeEEEEeeC
Q 044598 7 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNE------------DELRDAVLLVFANK 54 (110)
Q Consensus 7 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~iiv~nK 54 (110)
.-+..||.+++++..-+..-...++.|+..+... .-+.++|++++.+-
T Consensus 85 ~~~~~AD~lvi~~P~~n~~~Pa~LK~~iD~v~~~G~tF~~~~~~~~gll~~k~~~vi~~~ 144 (208)
T PRK13555 85 NQFLEADKVVFAFPLWNFTVPAPLITYISYLSQAGKTFKYTANGPEGLAGGKKVVVLGAR 144 (208)
T ss_pred HHHHHcCEEEEEcCcccccchHHHHHHHHHHhcCCceeecCCCCCccccCCCeEEEEEcC
Confidence 4577899999999876533334455666666542 11346788777664
No 400
>PF11185 DUF2971: Protein of unknown function (DUF2971); InterPro: IPR021352 This bacterial family of proteins has no known function.
Probab=54.79 E-value=14 Score=18.66 Aligned_cols=17 Identities=41% Similarity=0.958 Sum_probs=15.8
Q ss_pred hHHHhcccCCEEEEEEE
Q 044598 4 LWRHYFQNTQGLIFVVD 20 (110)
Q Consensus 4 ~~~~~~~~~~~~i~v~d 20 (110)
||+.|-.+..++.+.+|
T Consensus 1 mW~~Y~~~~~Gv~i~f~ 17 (90)
T PF11185_consen 1 MWRHYADNHKGVCIGFD 17 (90)
T ss_pred ChHHhCCCCceEEEEEc
Confidence 79999999999999997
No 401
>KOG4530 consensus Predicted flavoprotein [General function prediction only]
Probab=53.13 E-value=48 Score=19.95 Aligned_cols=47 Identities=17% Similarity=0.271 Sum_probs=29.2
Q ss_pred hHHHhcccCCEEEEEEECCCh---hhHHHHHHHHHHHhcCCCCCCCeEEEEeeCC
Q 044598 4 LWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQ 55 (110)
Q Consensus 4 ~~~~~~~~~~~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~ 55 (110)
-|+.-+..+|.++||..--+- ..+.....|+. +. ..++|.++|..--
T Consensus 79 aw~~ki~~aD~ivFvtPqYN~gypA~LKNAlD~ly----he-W~gKPalivSyGG 128 (199)
T KOG4530|consen 79 AWRQKILEADSIVFVTPQYNFGYPAPLKNALDWLY----HE-WAGKPALIVSYGG 128 (199)
T ss_pred HHHHHHhhcceEEEecccccCCCchHHHHHHHHhh----hh-hcCCceEEEEecC
Confidence 477788899999999754331 12333333322 22 3689999987654
No 402
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=51.61 E-value=55 Score=20.71 Aligned_cols=45 Identities=16% Similarity=0.194 Sum_probs=25.2
Q ss_pred cccCCEEEEEEECCChhhHHHHHH---HHHHHhcCCCCCCCe-EEEEeeCCCC
Q 044598 9 FQNTQGLIFVVDSNDRDRVVEARD---ELHRMLNEDELRDAV-LLVFANKQDL 57 (110)
Q Consensus 9 ~~~~~~~i~v~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~iiv~nK~Dl 57 (110)
+..||.+|+++.++ ..++..... .+...... .+.+ .-++.|+.+.
T Consensus 136 l~~aD~vlip~~p~-~~~l~~~~~~~~~i~~~~~~---~~l~~~giV~Nr~~~ 184 (267)
T cd02032 136 LNYADYALIVTDND-FDSIFAANRIAAAVREKAKT---YKVRLAGLIANRTDK 184 (267)
T ss_pred hhhcCEEEEEecCC-cccHHHHHHHHHHHHHHhhc---cCCceEEEEEeCCCH
Confidence 66799999988765 233333322 22222111 3444 3478899884
No 403
>PRK00170 azoreductase; Reviewed
Probab=50.10 E-value=55 Score=19.64 Aligned_cols=49 Identities=4% Similarity=0.074 Sum_probs=29.8
Q ss_pred HhcccCCEEEEEEECCChhhHHHHHHHHHHHhcC------------CCCCCCeEEEEeeCC
Q 044598 7 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNE------------DELRDAVLLVFANKQ 55 (110)
Q Consensus 7 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~iiv~nK~ 55 (110)
.-+..||++|+....-...-....+.|+..+... ..+.+++++++.+--
T Consensus 82 ~~i~~AD~iV~~sP~y~~~~pa~LK~~iDrv~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g 142 (201)
T PRK00170 82 EEFLAADKIVIAAPMYNFSIPTQLKAYIDLIARAGKTFRYTENGPVGLVTGKKALLITSRG 142 (201)
T ss_pred HHHHHCCEEEEeecccccCCcHHHHHHHHhheeCCceEEecCCCCccCcCCcEEEEEEeCC
Confidence 3477899999998765432234445566665321 113567888887643
No 404
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=49.56 E-value=26 Score=19.60 Aligned_cols=39 Identities=13% Similarity=0.268 Sum_probs=23.4
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCC
Q 044598 12 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 57 (110)
Q Consensus 12 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl 57 (110)
+..+++--|++ |.. ....+...-.+ .++|++.|.||..|
T Consensus 44 a~LVviA~Dv~-P~~---~~~~l~~lc~~---~~vpyv~V~sk~~L 82 (116)
T COG1358 44 AKLVVIAEDVS-PEE---LVKHLPALCEE---KNVPYVYVGSKKEL 82 (116)
T ss_pred CcEEEEecCCC-HHH---HHHHHHHHHHh---cCCCEEEeCCHHHH
Confidence 66777766765 222 22223332222 58999999998765
No 405
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=49.45 E-value=48 Score=18.80 Aligned_cols=51 Identities=16% Similarity=0.211 Sum_probs=27.4
Q ss_pred HHhcccCCEEEEEEECCChhhHHHHHHHHHHHh--cCCCCCCCeEEEEeeCCC
Q 044598 6 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRML--NEDELRDAVLLVFANKQD 56 (110)
Q Consensus 6 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~iiv~nK~D 56 (110)
...+..||++|+....-...-....+..+..+. ....+.++|+.++.+=..
T Consensus 65 ~~~l~~aD~iI~~sP~y~~~~s~~lK~~lD~~~~~~~~~~~~K~~~~i~~~g~ 117 (152)
T PF03358_consen 65 YDKLKEADGIIFASPVYNGSVSGQLKNFLDRLSCWFRRALRGKPVAIIAVGGG 117 (152)
T ss_dssp HHHHHHSSEEEEEEEEBTTBE-HHHHHHHHTHHHTHTTTTTTSEEEEEEEESS
T ss_pred HhceecCCeEEEeecEEcCcCChhhhHHHHHhccccccccCCCEEEEEEEecC
Confidence 345778999999887543211222223333321 133446788877765433
No 406
>PF04317 DUF463: YcjX-like family, DUF463; InterPro: IPR007413 Some members of this family are thought to possess an ATP-binding domain towards their N terminus.
Probab=49.44 E-value=72 Score=22.45 Aligned_cols=59 Identities=24% Similarity=0.309 Sum_probs=37.6
Q ss_pred cchHHHhcccCCEEEEEEECCC-----hhhHHHHHHHHHHHhcCCC------------CCCCeEEEEeeCCCCCCC
Q 044598 2 RPLWRHYFQNTQGLIFVVDSND-----RDRVVEARDELHRMLNEDE------------LRDAVLLVFANKQDLPNA 60 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~-----~~~~~~~~~~~~~~~~~~~------------~~~~~~iiv~nK~Dl~~~ 60 (110)
+++.+.++.+.|-=|.++|+-. +..+++...-+..+++.-. .+--.++++.+|.|-...
T Consensus 246 kpFyr~hFar~DRQIVLVD~L~aLn~G~~a~~Dm~~AL~~il~sFryG~~~~L~rLf~prIdkvlFAATKADHv~~ 321 (443)
T PF04317_consen 246 KPFYRDHFARFDRQIVLVDCLQALNAGPAAFEDMRQALAQILQSFRYGRSSLLRRLFSPRIDKVLFAATKADHVTP 321 (443)
T ss_pred HHHHHHHHhhhCceEEEEeechhhhcCHHHHHHHHHHHHHHHHhcCCCcchHHHHHhccchhhhheeechhccCCH
Confidence 3566778899999999999764 3445555544444443211 011358999999996544
No 407
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=49.42 E-value=38 Score=19.97 Aligned_cols=48 Identities=15% Similarity=0.161 Sum_probs=27.4
Q ss_pred HHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeC
Q 044598 6 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANK 54 (110)
Q Consensus 6 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK 54 (110)
..-+..||++|++...-...-....+.++..+ ....+.++|+.++.+-
T Consensus 60 ~~~i~~AD~iI~~sP~Y~~sip~~LK~~iD~~-~~~~l~~K~v~~~~~g 107 (171)
T TIGR03567 60 TAQVAQADGVVVATPVYKASYSGVLKALLDLL-PQRALRGKVVLPIATG 107 (171)
T ss_pred HHHHHHCCEEEEECCcccCCCCHHHHHHHHhC-ChhhhCCCEEEEEEcC
Confidence 34567899999988754321122223333332 2223467898888765
No 408
>PF07764 Omega_Repress: Omega Transcriptional Repressor; InterPro: IPR011686 The omega transcriptional repressor regulates expression of genes involved in copy number control and stable maintenance of plasmids. The omega protein belongs to the structural superfamily of MetJ/Arc repressors featuring a ribbon-helix-helix DNA-binding motif with the beta-ribbon located in and recognising the major groove of operator DNA [].; PDB: 2BNW_D 1IRQ_A 2CAX_B 2BNZ_A.
Probab=49.41 E-value=20 Score=17.58 Aligned_cols=19 Identities=16% Similarity=0.137 Sum_probs=13.7
Q ss_pred ecccCCCHHHHHHHHHHHH
Q 044598 86 CATSGEGLYEGLDWLSNNI 104 (110)
Q Consensus 86 Sa~~~~~i~~l~~~l~~~~ 104 (110)
+|++|-|+.++.+.-.+.-
T Consensus 44 tAknGgNvKEvme~~lr~~ 62 (71)
T PF07764_consen 44 TAKNGGNVKEVMEQALREK 62 (71)
T ss_dssp HHHSSS-HHHHHHHHHHHH
T ss_pred ecccCCCHHHHHHHHHHHH
Confidence 7999999999887554443
No 409
>PRK09739 hypothetical protein; Provisional
Probab=48.89 E-value=59 Score=19.67 Aligned_cols=48 Identities=15% Similarity=0.021 Sum_probs=29.3
Q ss_pred HhcccCCEEEEEEECCChhhHHHHHHHHHHHhcC-------CCCCCCeEEEEeeC
Q 044598 7 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNE-------DELRDAVLLVFANK 54 (110)
Q Consensus 7 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~iiv~nK 54 (110)
.-+..||.+|+....-.-.-....+.|+..+... ..+.+++++++.+-
T Consensus 75 ~~l~~AD~iV~~~P~y~~~~Pa~LK~~iD~v~~~g~~y~~~~~l~~k~~~~v~t~ 129 (199)
T PRK09739 75 SELLEHDALVFVFPLWWYSFPAMLKGYIDRVWNNGLAYGDGHKLPFNKVRWVALV 129 (199)
T ss_pred HHHHhCCEEEEECchhhhcchHHHHHHHHHHccccccccCCccCCCCeEEEEEec
Confidence 4577899999999765433334455667665421 12346777776653
No 410
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=47.57 E-value=41 Score=20.43 Aligned_cols=47 Identities=23% Similarity=0.276 Sum_probs=26.9
Q ss_pred HHhcccCCEEEEEEECCChhhHHHH-HHHHHHHhcCCCCCCCeEEEEeeC
Q 044598 6 RHYFQNTQGLIFVVDSNDRDRVVEA-RDELHRMLNEDELRDAVLLVFANK 54 (110)
Q Consensus 6 ~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK 54 (110)
..-++.||++|++...-.. ++... +.++.. +....+.++|+.++.+-
T Consensus 61 ~~~i~~AD~iIi~tP~Y~~-s~pg~LKn~iD~-l~~~~l~~K~v~iiat~ 108 (191)
T PRK10569 61 TEQLAQADGLIVATPVYKA-SFSGALKTLLDL-LPERALEHKVVLPLATG 108 (191)
T ss_pred HHHHHHCCEEEEECCccCC-CCCHHHHHHHHh-CChhhhCCCEEEEEEec
Confidence 3457789999998865432 12222 222222 22223467899988885
No 411
>PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional
Probab=46.73 E-value=66 Score=19.57 Aligned_cols=48 Identities=10% Similarity=0.086 Sum_probs=31.5
Q ss_pred HhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCC--------CCCCCeEEEEeeC
Q 044598 7 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNED--------ELRDAVLLVFANK 54 (110)
Q Consensus 7 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~iiv~nK 54 (110)
..+..||.+|+.+..---....-.+.|+++++... .+.++++.++.+=
T Consensus 57 ~~l~~aD~iV~~fPl~w~~~Pa~LK~wiD~V~~~g~ay~~~g~~l~gK~~~~~~T~ 112 (184)
T PRK04930 57 ALLREHDVIVFQHPLYTYSCPALLKEWLDRVLSRGFASGPGGNALAGKYWRSVITT 112 (184)
T ss_pred HHHHhCCEEEEEcCccccCCcHHHHHHHHHHHhcCcccCCCCCccCCCEEEEEEEC
Confidence 35778999999998754333444567777776531 2356777777654
No 412
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=45.41 E-value=74 Score=19.78 Aligned_cols=48 Identities=13% Similarity=0.113 Sum_probs=28.9
Q ss_pred HHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCC
Q 044598 6 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 57 (110)
Q Consensus 6 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl 57 (110)
...+..+|.+++++.+. ..++......+..+ ... ...+..++.|+.+.
T Consensus 128 ~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l-~~~--~~~~~~iviN~~~~ 175 (261)
T TIGR01968 128 RNAVAPADEAIVVTTPE-VSAVRDADRVIGLL-EAK--GIEKIHLIVNRLRP 175 (261)
T ss_pred HHHHHhCCeEEEEcCCC-cHHHHHHHHHHHHH-HHc--CCCceEEEEeCcCc
Confidence 44567899999999875 33444443333322 221 12367788899875
No 413
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=44.47 E-value=64 Score=18.78 Aligned_cols=44 Identities=14% Similarity=0.156 Sum_probs=26.7
Q ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCC
Q 044598 10 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 57 (110)
Q Consensus 10 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl 57 (110)
..+|.++++..+. +.+..+....+..+.+. .-...-++.|+.+.
T Consensus 90 ~~ad~viiV~~p~-~~s~~~~~~~~~~l~~~---~~~~~gvv~N~~~~ 133 (169)
T cd02037 90 LPIDGAVIVTTPQ-EVALDDVRKAIDMFKKV---NIPILGVVENMSYF 133 (169)
T ss_pred cCCCeEEEEECCc-hhhHHHHHHHHHHHHhc---CCCeEEEEEcCCcc
Confidence 4789999999776 34455554444444322 22345678899874
No 414
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=44.46 E-value=39 Score=22.70 Aligned_cols=12 Identities=33% Similarity=0.659 Sum_probs=9.6
Q ss_pred CCEEEEEEECCC
Q 044598 12 TQGLIFVVDSND 23 (110)
Q Consensus 12 ~~~~i~v~d~~~ 23 (110)
-|+++-|+|+..
T Consensus 178 LDGIVTvvD~K~ 189 (391)
T KOG2743|consen 178 LDGIVTVVDAKH 189 (391)
T ss_pred eeeEEEEEehhh
Confidence 578999999854
No 415
>CHL00175 minD septum-site determining protein; Validated
Probab=43.59 E-value=86 Score=20.02 Aligned_cols=48 Identities=10% Similarity=0.014 Sum_probs=28.1
Q ss_pred HHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCC
Q 044598 6 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 57 (110)
Q Consensus 6 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl 57 (110)
...+..||.+++|++++ +.+.......+..+. ... ....-++.|+.+.
T Consensus 143 ~~~l~~aD~viiV~~p~-~~si~~~~~~~~~l~-~~~--~~~~~lvvN~~~~ 190 (281)
T CHL00175 143 INAIAPAQEAIVVTTPE-ITAIRDADRVAGLLE-ANG--IYNVKLLVNRVRP 190 (281)
T ss_pred HHHHHhcCeeEEEcCCC-hHHHHHHHHHHHHHH-HcC--CCceEEEEeccCh
Confidence 34567789999998865 444554433333322 211 2345678899874
No 416
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=42.94 E-value=86 Score=22.26 Aligned_cols=67 Identities=15% Similarity=0.175 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEEeeec--ccCCCHHHHHHHH
Q 044598 26 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA--TSGEGLYEGLDWL 100 (110)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa--~~~~~i~~l~~~l 100 (110)
.+.++.......++. -++|++++.|-.+-... ...++...+. .....+++++++ .+...+..+++.+
T Consensus 164 ~Y~eAEervI~ELk~---igKPFvillNs~~P~s~-et~~L~~eL~----ekY~vpVlpvnc~~l~~~DI~~Il~~v 232 (492)
T PF09547_consen 164 NYVEAEERVIEELKE---IGKPFVILLNSTKPYSE-ETQELAEELE----EKYDVPVLPVNCEQLREEDITRILEEV 232 (492)
T ss_pred HHHHHHHHHHHHHHH---hCCCEEEEEeCCCCCCH-HHHHHHHHHH----HHhCCcEEEeehHHcCHHHHHHHHHHH
Confidence 344444333333333 47999999998873221 2222333221 123446666665 3444455555443
No 417
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=42.26 E-value=25 Score=25.41 Aligned_cols=47 Identities=23% Similarity=0.255 Sum_probs=26.0
Q ss_pred HHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCC
Q 044598 6 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 57 (110)
Q Consensus 6 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl 57 (110)
-..++-+|+++.|+|+.+---. +....+...+.+ .+.-+++.||.|.
T Consensus 116 TAALRVTDGALVVVDcv~GvCV-QTETVLrQA~~E----RIkPvlv~NK~DR 162 (842)
T KOG0469|consen 116 TAALRVTDGALVVVDCVSGVCV-QTETVLRQAIAE----RIKPVLVMNKMDR 162 (842)
T ss_pred hheeEeccCcEEEEEccCceEe-chHHHHHHHHHh----hccceEEeehhhH
Confidence 3457778999999998642100 011112222222 2334778899995
No 418
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=40.97 E-value=69 Score=19.95 Aligned_cols=19 Identities=5% Similarity=-0.109 Sum_probs=14.2
Q ss_pred HHhcccCCEEEEEEECCCh
Q 044598 6 RHYFQNTQGLIFVVDSNDR 24 (110)
Q Consensus 6 ~~~~~~~~~~i~v~d~~~~ 24 (110)
...+.+.|++|+.-|.++.
T Consensus 36 ~~~~~~~D~viiaGDl~~~ 54 (232)
T cd07393 36 DNVVAPEDIVLIPGDISWA 54 (232)
T ss_pred HhcCCCCCEEEEcCCCccC
Confidence 3334578999999998854
No 419
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=40.15 E-value=82 Score=19.80 Aligned_cols=49 Identities=10% Similarity=0.101 Sum_probs=26.8
Q ss_pred HHHhcccCCEEEEEEECCC---hhhHHHHHHHHHHHhc-CCCCCCCeEEEEee
Q 044598 5 WRHYFQNTQGLIFVVDSND---RDRVVEARDELHRMLN-EDELRDAVLLVFAN 53 (110)
Q Consensus 5 ~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~iiv~n 53 (110)
|...++.+|++|++..--+ +..+.....|+..... .....++|+-+++.
T Consensus 84 l~~~v~~ADgvii~TPEYn~sipg~LKNaiDwls~~~~~~~~~~~Kpvaivga 136 (219)
T TIGR02690 84 LRQLSEWSEGQVWCSPERHGAITGSQKDQIDWIPLSVGPVRPTQGKTLAVMQV 136 (219)
T ss_pred HHHHHHhCCEEEEeCCccccCcCHHHHHHHHhcccCcccccccCCCcEEEEEe
Confidence 4566888999999886433 1223333333322100 01246789888764
No 420
>PRK13660 hypothetical protein; Provisional
Probab=39.96 E-value=88 Score=19.09 Aligned_cols=12 Identities=0% Similarity=0.002 Sum_probs=6.3
Q ss_pred cccCCEEEEEEE
Q 044598 9 FQNTQGLIFVVD 20 (110)
Q Consensus 9 ~~~~~~~i~v~d 20 (110)
.+.||.+..+..
T Consensus 99 ~~~aD~v~~vs~ 110 (182)
T PRK13660 99 LKQADFVKSISK 110 (182)
T ss_pred HHhCCEEEEecC
Confidence 455555555543
No 421
>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation. SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....
Probab=38.89 E-value=38 Score=15.90 Aligned_cols=16 Identities=6% Similarity=0.106 Sum_probs=11.7
Q ss_pred hcccCCEEEEEEECCC
Q 044598 8 YFQNTQGLIFVVDSND 23 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~~ 23 (110)
.+-+++++++|++.++
T Consensus 29 ~LC~~~v~~iv~~~~g 44 (51)
T PF00319_consen 29 TLCGVDVALIVFSPDG 44 (51)
T ss_dssp HHHT-EEEEEEEETTS
T ss_pred eecCCeEEEEEECCCC
Confidence 4668999999998654
No 422
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.84 E-value=1.1e+02 Score=20.01 Aligned_cols=97 Identities=22% Similarity=0.283 Sum_probs=50.4
Q ss_pred HHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcC--CCCCCCeEEEEeeCCCCCCCC----CHHHHH----hhhCCCcc
Q 044598 6 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNE--DELRDAVLLVFANKQDLPNAM----NAAEIT----DKLGLHSL 75 (110)
Q Consensus 6 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~iiv~nK~Dl~~~~----~~~~~~----~~~~~~~~ 75 (110)
...++++.+.|||+|+.+. +.+....+...... .--+++.+=+..-|.|-.... .+..+. +.+.-...
T Consensus 96 e~iF~~~gALifvIDaQdd--y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gl 173 (347)
T KOG3887|consen 96 EMIFRGVGALIFVIDAQDD--YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGL 173 (347)
T ss_pred HHHHhccCeEEEEEechHH--HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhh
Confidence 4568899999999998753 33222222222222 112467788889999953321 111111 11110001
Q ss_pred cCcceEEEeeecccCCCHHHHHHHHHHHHH
Q 044598 76 RQRHWYIQSTCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 76 ~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
..-...+..+|-.+ .++.+.|..+.+.+.
T Consensus 174 e~v~vsf~LTSIyD-HSIfEAFSkvVQkLi 202 (347)
T KOG3887|consen 174 EKVQVSFYLTSIYD-HSIFEAFSKVVQKLI 202 (347)
T ss_pred ccceEEEEEeeecc-hHHHHHHHHHHHHHh
Confidence 12344566666644 456677766665553
No 423
>PTZ00222 60S ribosomal protein L7a; Provisional
Probab=38.41 E-value=37 Score=21.93 Aligned_cols=40 Identities=8% Similarity=0.077 Sum_probs=24.3
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCC
Q 044598 11 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 57 (110)
Q Consensus 11 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl 57 (110)
.+.+||+--|++. .+...++...... .++|++++.+|.+|
T Consensus 148 KAkLVIIA~DVsP----ie~vk~LpaLCrk---~~VPY~iVktKaeL 187 (263)
T PTZ00222 148 QARMVVIANNVDP----VELVLWMPNLCRA---NKIPYAIVKDMARL 187 (263)
T ss_pred CceEEEEeCCCCH----HHHHHHHHHHHHh---cCCCEEEECCHHHH
Confidence 3566666666652 2223344444333 58999999998775
No 424
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=37.84 E-value=86 Score=18.37 Aligned_cols=52 Identities=12% Similarity=0.111 Sum_probs=32.0
Q ss_pred HHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCC
Q 044598 5 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 58 (110)
Q Consensus 5 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 58 (110)
+...+..+|.+|.+++++. .+.......+..+... .......-+|.||.+..
T Consensus 110 ~~~~l~~ad~viv~~~~~~-~~i~~~~~~~~~l~~~-~~~~~~~~vv~N~v~~~ 161 (195)
T PF01656_consen 110 VRNALAAADYVIVPIEPDP-SSIEGAERLIELLKRL-GKKLKIIGVVINRVDPG 161 (195)
T ss_dssp HHHHHHTSSEEEEEEESSH-HHHHHHHHHHHHHHHH-THTEEEEEEEEEEETSC
T ss_pred HHHHHHhCceeeeecCCcH-HHHHHHHHHHHHHHHh-ccccceEEEEEeeeCCC
Confidence 4556789999999999863 3444444433332211 10123678899999864
No 425
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=37.77 E-value=86 Score=18.36 Aligned_cols=22 Identities=9% Similarity=0.163 Sum_probs=16.3
Q ss_pred HHHhcccCCEEEEEEECCChhh
Q 044598 5 WRHYFQNTQGLIFVVDSNDRDR 26 (110)
Q Consensus 5 ~~~~~~~~~~~i~v~d~~~~~~ 26 (110)
|...+.++|.++++-|..+...
T Consensus 36 ~~~~~~~~d~vi~~GDl~~~~~ 57 (168)
T cd07390 36 WNETVGPDDTVYHLGDFSFGGK 57 (168)
T ss_pred HhhhcCCCCEEEEeCCCCCCCC
Confidence 4445667899999999886543
No 426
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=37.72 E-value=1.2e+02 Score=19.83 Aligned_cols=45 Identities=11% Similarity=0.146 Sum_probs=25.2
Q ss_pred cccCCEEEEEEECCChhhHHHHHH---HHHHHhcCCCCCCC-eEEEEeeCCCC
Q 044598 9 FQNTQGLIFVVDSNDRDRVVEARD---ELHRMLNEDELRDA-VLLVFANKQDL 57 (110)
Q Consensus 9 ~~~~~~~i~v~d~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~iiv~nK~Dl 57 (110)
+..||.+|++++++ +.++..... ++.... . . .+. ..-++.|+.+.
T Consensus 136 l~~AD~viIp~~p~-~~sl~~~~~l~~~i~~~~-~-~-~~l~~~gvv~n~~~~ 184 (290)
T CHL00072 136 LNYADYCIIITDNG-FDALFAANRIAASVREKA-R-T-HPLRLAGLVGNRTSK 184 (290)
T ss_pred hhcCCEEEEEecCC-HHHHHHHHHHHHHHHHHh-c-c-CCCceEEEEEeCCCc
Confidence 45689999988765 344444433 223321 1 1 233 34488899873
No 427
>PTZ00365 60S ribosomal protein L7Ae-like; Provisional
Probab=37.57 E-value=48 Score=21.50 Aligned_cols=40 Identities=13% Similarity=0.189 Sum_probs=24.7
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCC
Q 044598 11 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 57 (110)
Q Consensus 11 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl 57 (110)
.+.++|+--|++ + .+...++-..... .++|++++.+|.+|
T Consensus 148 KAkLVIIA~DVs-P---~t~kk~LP~LC~k---~~VPY~iv~sK~eL 187 (266)
T PTZ00365 148 KAKLVVIAHDVD-P---IELVCFLPALCRK---KEVPYCIIKGKSRL 187 (266)
T ss_pred CccEEEEeCCCC-H---HHHHHHHHHHHhc---cCCCEEEECCHHHH
Confidence 466777777765 2 2223333333322 58999999999886
No 428
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=37.30 E-value=1.6e+02 Score=21.48 Aligned_cols=56 Identities=20% Similarity=0.057 Sum_probs=29.9
Q ss_pred CCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEEeee--cccCCCHHHHHHHHHHHH
Q 044598 44 RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTC--ATSGEGLYEGLDWLSNNI 104 (110)
Q Consensus 44 ~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S--a~~~~~i~~l~~~l~~~~ 104 (110)
.+.|++++.|+.... ..+|+...... ....+.++..+. ++-|+|-.++-+.+.+.+
T Consensus 370 fGvpvVVAIN~F~tD---T~aEi~~I~~~--~~~~Gv~~avs~~wa~GGeGa~eLA~~Vv~a~ 427 (557)
T PF01268_consen 370 FGVPVVVAINRFPTD---TDAEIELIREL--CEELGVRAAVSEHWAKGGEGAVELAEAVVEAC 427 (557)
T ss_dssp TT--EEEEEE--TTS----HHHHHHHHHH--CCCCCEEEEEC-HHHHGGGGCHHHHHHHHHH-
T ss_pred cCCCeEEEecCCCCC---CHHHHHHHHHH--HHhCCCCEEEechhhcccccHHHHHHHHHHHh
Confidence 589999999998642 23333221110 223444543333 678889888988888877
No 429
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=37.29 E-value=86 Score=18.24 Aligned_cols=13 Identities=23% Similarity=0.463 Sum_probs=8.4
Q ss_pred cCCEEEEEEECCC
Q 044598 11 NTQGLIFVVDSND 23 (110)
Q Consensus 11 ~~~~~i~v~d~~~ 23 (110)
..+.+++|+|+..
T Consensus 112 ~~~~~~lVv~~~~ 124 (173)
T cd03115 112 KPDEVLLVVDAMT 124 (173)
T ss_pred CCCeEEEEEECCC
Confidence 3667777777643
No 430
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=37.17 E-value=34 Score=22.21 Aligned_cols=15 Identities=13% Similarity=0.180 Sum_probs=12.7
Q ss_pred hcccCCEEEEEEECC
Q 044598 8 YFQNTQGLIFVVDSN 22 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~ 22 (110)
.++++|++++|+|+.
T Consensus 89 ~i~~~D~li~VV~~f 103 (274)
T cd01900 89 HIREVDAIAHVVRCF 103 (274)
T ss_pred HHHhCCEEEEEEeCc
Confidence 367899999999975
No 431
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=37.08 E-value=98 Score=18.83 Aligned_cols=47 Identities=6% Similarity=0.019 Sum_probs=25.2
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCC-eEEEEeeCCCCC
Q 044598 11 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDA-VLLVFANKQDLP 58 (110)
Q Consensus 11 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~iiv~nK~Dl~ 58 (110)
.||.++.+++++ ..++......+..+.......+. ...++.||.+..
T Consensus 141 ~ad~vliv~~p~-~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~ 188 (212)
T cd02117 141 KADEIYIVTSGE-FMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD 188 (212)
T ss_pred cCcEEEEEeccc-HHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc
Confidence 789999999775 33443333222222111111132 356899999853
No 432
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=36.83 E-value=72 Score=21.88 Aligned_cols=43 Identities=9% Similarity=0.209 Sum_probs=26.9
Q ss_pred cCCEEEEEEECCChhhHHHHHH-HHHHHhcCCCCCCCeEEEEeeCCCCCC
Q 044598 11 NTQGLIFVVDSNDRDRVVEARD-ELHRMLNEDELRDAVLLVFANKQDLPN 59 (110)
Q Consensus 11 ~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nK~Dl~~ 59 (110)
+.|+|||.+.++. +.+...+- .+.++ . ..+.+|=|.-|+|...
T Consensus 133 RVH~cLYFI~Ptg-h~l~~~DIe~Mk~l-s----~~vNlIPVI~KaD~lT 176 (373)
T COG5019 133 RVHACLYFIRPTG-HGLKPLDIEAMKRL-S----KRVNLIPVIAKADTLT 176 (373)
T ss_pred ceEEEEEEecCCC-CCCCHHHHHHHHHH-h----cccCeeeeeeccccCC
Confidence 5789999998764 33433332 22232 1 3466888889999754
No 433
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=36.58 E-value=1.2e+02 Score=19.58 Aligned_cols=43 Identities=12% Similarity=0.066 Sum_probs=26.5
Q ss_pred cccCCEEEEEEECCChh---hHHHHHHHHHHHhcCCCCCCCeEEEEeeCC
Q 044598 9 FQNTQGLIFVVDSNDRD---RVVEARDELHRMLNEDELRDAVLLVFANKQ 55 (110)
Q Consensus 9 ~~~~~~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~ 55 (110)
...+|.++-++.+.+.. .+....+.+.+. ..++.|+.++-|=.
T Consensus 152 AA~adfVi~~YNP~s~~R~~~~~~a~eil~~~----r~~~tpVgivrnag 197 (249)
T COG1010 152 AAEADFVIALYNPISKRRPEQLGRAFEILREH----RSPDTPVGIVRNAG 197 (249)
T ss_pred HhhCCEEEEEECCccccchHHHHHHHHHHHHh----cCCCCcEEEEecCC
Confidence 45789999999876543 233333333332 22578999887765
No 434
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=36.51 E-value=65 Score=18.37 Aligned_cols=57 Identities=18% Similarity=0.181 Sum_probs=36.5
Q ss_pred eEEEEeeCCCCCCCC-C-------HHHHH---hhhCCCcccCcceEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 47 VLLVFANKQDLPNAM-N-------AAEIT---DKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 47 ~~iiv~nK~Dl~~~~-~-------~~~~~---~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
-+++++.|.+--.-. . .+.++ ..+++ .+..+.++.+||..++.+.+.++...+.+.+
T Consensus 56 GV~v~GC~~geCHy~~GN~ka~rR~~~lke~l~elgi---e~eRv~~~wiSa~E~ekf~e~~~efv~~i~~ 123 (132)
T COG1908 56 GVLVAGCKIGECHYISGNYKAKRRMELLKELLKELGI---EPERVRVLWISAAEGEKFAETINEFVERIKE 123 (132)
T ss_pred eEEEecccccceeeeccchHHHHHHHHHHHHHHHhCC---CcceEEEEEEehhhHHHHHHHHHHHHHHHHH
Confidence 488888888742111 0 11122 22332 3456788899999999999888888877753
No 435
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=36.48 E-value=92 Score=18.34 Aligned_cols=42 Identities=14% Similarity=0.178 Sum_probs=23.0
Q ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCC
Q 044598 10 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQD 56 (110)
Q Consensus 10 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D 56 (110)
..+|.+|+-+.=. -.+...++..++..-. .+.+++|||-|-.
T Consensus 68 ~~~D~vvly~PKa----K~e~~~lL~~l~~~L~-~g~~i~vVGEnk~ 109 (155)
T PF08468_consen 68 QDFDTVVLYWPKA----KAEAQYLLANLLSHLP-PGTEIFVVGENKG 109 (155)
T ss_dssp TT-SEEEEE--SS----HHHHHHHHHHHHTTS--TT-EEEEEEEGGG
T ss_pred cCCCEEEEEccCc----HHHHHHHHHHHHHhCC-CCCEEEEEecCcc
Confidence 4688999888533 3334445555544322 4788999997754
No 436
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=34.63 E-value=44 Score=20.80 Aligned_cols=51 Identities=12% Similarity=0.263 Sum_probs=29.1
Q ss_pred hHHHhcccCCEEEEE-EECCChh-----hHHHHHHHHHHHhcCCCCCCCeEEEEeeCC
Q 044598 4 LWRHYFQNTQGLIFV-VDSNDRD-----RVVEARDELHRMLNEDELRDAVLLVFANKQ 55 (110)
Q Consensus 4 ~~~~~~~~~~~~i~v-~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~ 55 (110)
++.-+|+++++.-++ .+..+.. .+.+...-+...+++.+ .+.|+|+++=-+
T Consensus 48 vfAP~YRQatl~~~~~~~~~~~~~a~~~ay~DV~~AF~~yL~~~n-~GRPfILaGHSQ 104 (207)
T PF11288_consen 48 VFAPRYRQATLYAFLDTDREDAEKAFDLAYSDVRAAFDYYLANYN-NGRPFILAGHSQ 104 (207)
T ss_pred cccChhhcchhhhhhccCcchhHHHHHhhHHHHHHHHHHHHHhcC-CCCCEEEEEeCh
Confidence 445577888877776 3332211 13444444555555533 578999998443
No 437
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=34.54 E-value=95 Score=18.60 Aligned_cols=12 Identities=25% Similarity=0.296 Sum_probs=9.8
Q ss_pred CCCeEEEEeeCC
Q 044598 44 RDAVLLVFANKQ 55 (110)
Q Consensus 44 ~~~~~iiv~nK~ 55 (110)
.++|.++|.|-.
T Consensus 99 l~KPlivVvNd~ 110 (170)
T KOG3349|consen 99 LGKPLIVVVNDS 110 (170)
T ss_pred cCCCEEEEeChH
Confidence 379999999864
No 438
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=34.32 E-value=1.3e+02 Score=23.60 Aligned_cols=49 Identities=14% Similarity=0.180 Sum_probs=30.2
Q ss_pred chHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeC
Q 044598 3 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANK 54 (110)
Q Consensus 3 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK 54 (110)
++.+.+++.||++++|-..++.+...+....+...-. ...+..++..-+
T Consensus 721 ~WtrrClrqaD~ILiva~g~~~pe~g~~er~l~~~~~---ra~kELvlL~pe 769 (1158)
T KOG2968|consen 721 NWTRRCLRQADCILIVALGDQSPEIGELERELLNMAV---RASKELVLLHPE 769 (1158)
T ss_pred HHHHHHHhhhCEEEEEecCCCCchHhHHHHHHHHhhh---hccceeEEeccc
Confidence 4567789999999999998765555555444433311 134555555443
No 439
>PF08925 DUF1907: Domain of Unknown Function (DUF1907); InterPro: IPR015021 The structure of this domain displays an alpha-beta-beta-alpha four layer topology, with an HxHxxxxxxxxxH motif that coordinates a zinc ion, and an acetate anion at a site that likely supports the enzymatic activity of an ester hydrolase []. ; GO: 0005634 nucleus; PDB: 1XCR_B.
Probab=34.23 E-value=34 Score=22.43 Aligned_cols=31 Identities=10% Similarity=0.046 Sum_probs=22.5
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHHhhcC
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIANKVG 109 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 109 (110)
+-+++.++|+...|-.+....|.+.+.+++|
T Consensus 149 pGkVlkV~ak~RtG~~~f~~~iR~~L~~~Yg 179 (284)
T PF08925_consen 149 PGKVLKVKAKKRTGEKNFVTCIRKALEKHYG 179 (284)
T ss_dssp --EEEEEEEEEE-SSS-HHHHHHHHHHHHHT
T ss_pred CCceEEEEEeeecCCccHHHHHHHHHHHHcC
Confidence 4479999999888877888888888887765
No 440
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.94 E-value=93 Score=24.98 Aligned_cols=51 Identities=16% Similarity=0.146 Sum_probs=29.8
Q ss_pred cccCCEEEEEEECCChh-----hH----HHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC
Q 044598 9 FQNTQGLIFVVDSNDRD-----RV----VEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60 (110)
Q Consensus 9 ~~~~~~~i~v~d~~~~~-----~~----~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~ 60 (110)
.+-.+++|+.+|..+-- .. ..+..-+.++.+.- ....|+.+++||.|+...
T Consensus 212 ~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL-~~~~PVYl~lTk~Dll~G 271 (1188)
T COG3523 212 RRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETL-HARLPVYLVLTKADLLPG 271 (1188)
T ss_pred CCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhh-ccCCceEEEEeccccccc
Confidence 34578999999865421 11 11222233332221 136899999999998653
No 441
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=33.80 E-value=36 Score=24.04 Aligned_cols=26 Identities=19% Similarity=-0.060 Sum_probs=23.0
Q ss_pred eEEEeeecccCCCHHHHHHHHHHHHH
Q 044598 80 WYIQSTCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 80 ~~~~~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
-|++..||.++-||+.+++.+.+..+
T Consensus 251 TPVFFGSAl~NFGV~~~L~~~~~~AP 276 (528)
T COG4108 251 TPVFFGSALGNFGVDHFLDALVDWAP 276 (528)
T ss_pred cceEehhhhhccCHHHHHHHHHhhCC
Confidence 48999999999999999999887654
No 442
>PRK06756 flavodoxin; Provisional
Probab=33.12 E-value=97 Score=17.60 Aligned_cols=45 Identities=16% Similarity=0.135 Sum_probs=25.2
Q ss_pred hcccCCEEEEEEECCChhhH-HHHHHHHHHHhcCCCCCCCeEEEEee
Q 044598 8 YFQNTQGLIFVVDSNDRDRV-VEARDELHRMLNEDELRDAVLLVFAN 53 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~iiv~n 53 (110)
-+.++|.+++....-....+ .....++..+. .....++++.++++
T Consensus 46 ~~~~~d~vi~gspt~~~g~~p~~~~~fl~~l~-~~~l~~k~~~~fgt 91 (148)
T PRK06756 46 ILEQYDGIILGAYTWGDGDLPDDFLDFYDAMD-SIDLTGKKAAVFGS 91 (148)
T ss_pred HHhcCCeEEEEeCCCCCCCCcHHHHHHHHHHh-cCCCCCCEEEEEeC
Confidence 35677888888754321112 22344444432 22346789999887
No 443
>COG4474 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.95 E-value=1.2e+02 Score=18.48 Aligned_cols=19 Identities=11% Similarity=0.399 Sum_probs=12.1
Q ss_pred hcccCCEEEEEEECCChhh
Q 044598 8 YFQNTQGLIFVVDSNDRDR 26 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~~~~~ 26 (110)
.+.++|++++++|...+.+
T Consensus 126 ~le~sdg~ll~YD~ekegs 144 (180)
T COG4474 126 LLEKSDGALLFYDEEKEGS 144 (180)
T ss_pred hhccCceeEEEEcCcccCC
Confidence 3566777777777665444
No 444
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=32.90 E-value=9.3 Score=26.65 Aligned_cols=51 Identities=14% Similarity=0.012 Sum_probs=31.7
Q ss_pred hHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCC
Q 044598 4 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 59 (110)
Q Consensus 4 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~ 59 (110)
-.+.+++--|+++-|+|++.--......-| .+. +..+.|...+.||+|...
T Consensus 118 everclrvldgavav~dasagve~qtltvw----rqa-dk~~ip~~~finkmdk~~ 168 (753)
T KOG0464|consen 118 EVERCLRVLDGAVAVFDASAGVEAQTLTVW----RQA-DKFKIPAHCFINKMDKLA 168 (753)
T ss_pred EHHHHHHHhcCeEEEEeccCCcccceeeee----hhc-cccCCchhhhhhhhhhhh
Confidence 345677888999999998742111111111 111 224789999999999643
No 445
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=32.67 E-value=1.1e+02 Score=18.30 Aligned_cols=86 Identities=9% Similarity=0.067 Sum_probs=46.9
Q ss_pred cccCCEEEEEEECCC----h---hhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceE
Q 044598 9 FQNTQGLIFVVDSND----R---DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWY 81 (110)
Q Consensus 9 ~~~~~~~i~v~d~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 81 (110)
++....-.+++|-.+ + +-..+...|+.++.+.. ....++||.|-....+.....++...- ...+++
T Consensus 36 Lk~~Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~--~~~~v~IvSNsaGs~~d~~~~~a~~~~-----~~lgIp 108 (168)
T PF09419_consen 36 LKKKGIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQF--GKDRVLIVSNSAGSSDDPDGERAEALE-----KALGIP 108 (168)
T ss_pred hhhcCceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHC--CCCeEEEEECCCCcccCccHHHHHHHH-----HhhCCc
Confidence 455556666777554 1 11355567777765431 223699999986544332333322211 122346
Q ss_pred EEeeecccCCCHHHHHHHHH
Q 044598 82 IQSTCATSGEGLYEGLDWLS 101 (110)
Q Consensus 82 ~~~~Sa~~~~~i~~l~~~l~ 101 (110)
++.-++++-.+..++...+.
T Consensus 109 vl~h~~kKP~~~~~i~~~~~ 128 (168)
T PF09419_consen 109 VLRHRAKKPGCFREILKYFK 128 (168)
T ss_pred EEEeCCCCCccHHHHHHHHh
Confidence 66666777767777766654
No 446
>PRK13695 putative NTPase; Provisional
Probab=32.56 E-value=1.1e+02 Score=17.94 Aligned_cols=80 Identities=5% Similarity=0.026 Sum_probs=40.9
Q ss_pred HHhcccCCEEEEEEE---CCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEE
Q 044598 6 RHYFQNTQGLIFVVD---SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYI 82 (110)
Q Consensus 6 ~~~~~~~~~~i~v~d---~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (110)
...++++++ +++| ..+... ......+..++. .+.|++++.+|.... ......... ....+
T Consensus 91 ~~~l~~~~~--lllDE~~~~e~~~-~~~~~~l~~~~~----~~~~~i~v~h~~~~~-----~~~~~i~~~-----~~~~i 153 (174)
T PRK13695 91 ERALEEADV--IIIDEIGKMELKS-PKFVKAVEEVLD----SEKPVIATLHRRSVH-----PFVQEIKSR-----PGGRV 153 (174)
T ss_pred HhccCCCCE--EEEECCCcchhhh-HHHHHHHHHHHh----CCCeEEEEECchhhH-----HHHHHHhcc-----CCcEE
Confidence 334556666 5788 332211 222334444442 468999999985421 111111111 12244
Q ss_pred EeeecccCCCHHHHHHHHHHHHH
Q 044598 83 QSTCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 83 ~~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
+.+ +.+|-+++.+.+.+.+.
T Consensus 154 ~~~---~~~~r~~~~~~~~~~~~ 173 (174)
T PRK13695 154 YEL---TPENRDSLPFEILNRLK 173 (174)
T ss_pred EEE---cchhhhhHHHHHHHHHh
Confidence 444 66777788777777653
No 447
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=30.74 E-value=1.5e+02 Score=18.95 Aligned_cols=52 Identities=12% Similarity=0.116 Sum_probs=29.5
Q ss_pred HHhcccCCEEEEEEECCChh--hHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCC
Q 044598 6 RHYFQNTQGLIFVVDSNDRD--RVVEARDELHRMLNEDELRDAVLLVFANKQDLP 58 (110)
Q Consensus 6 ~~~~~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 58 (110)
...+..+|.+|+=.-.+..+ .-.....++.+..+. ..+..|.-+++|++...
T Consensus 100 ~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~-~~~~ip~~Vl~Tr~~~~ 153 (231)
T PF07015_consen 100 DYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKA-ERRDIPAAVLFTRVPAA 153 (231)
T ss_pred HHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHh-hCCCCCeeEEEecCCcc
Confidence 34466788887755444221 112223444444322 22578999999999743
No 448
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=30.52 E-value=1e+02 Score=17.10 Aligned_cols=11 Identities=9% Similarity=0.099 Sum_probs=6.7
Q ss_pred EEEEEEECCCh
Q 044598 14 GLIFVVDSNDR 24 (110)
Q Consensus 14 ~~i~v~d~~~~ 24 (110)
++++..-..++
T Consensus 26 ~iv~f~~~~Cp 36 (122)
T TIGR01295 26 ATFFIGRKTCP 36 (122)
T ss_pred EEEEEECCCCh
Confidence 46666666665
No 449
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=30.40 E-value=1e+02 Score=16.93 Aligned_cols=42 Identities=14% Similarity=0.194 Sum_probs=24.3
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCC
Q 044598 11 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 55 (110)
Q Consensus 11 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~ 55 (110)
.+++...|+|.. ..........+..+.... .+.|++++.++.
T Consensus 36 ~~~i~avvi~~d-~~~~~~~~~ll~~i~~~~--~~iPVFl~~~~~ 77 (115)
T PF03709_consen 36 FTDIAAVVISWD-GEEEDEAQELLDKIRERN--FGIPVFLLAERD 77 (115)
T ss_dssp TTTEEEEEEECH-HHHHHHHHHHHHHHHHHS--TT-EEEEEESCC
T ss_pred CCCeeEEEEEcc-cccchhHHHHHHHHHHhC--CCCCEEEEecCC
Confidence 578888888765 222233334444443321 579999998865
No 450
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=29.44 E-value=1.4e+02 Score=18.38 Aligned_cols=48 Identities=15% Similarity=0.164 Sum_probs=27.9
Q ss_pred HHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCC-eEEEEeeCCCCC
Q 044598 6 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDA-VLLVFANKQDLP 58 (110)
Q Consensus 6 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~iiv~nK~Dl~ 58 (110)
...+..||.++++++++- .+........ +.... .+. ..-++.|+.+..
T Consensus 125 ~~~l~~ad~vliv~~~~~-~s~~~~~~~~-~~~~~---~~~~~~~vv~N~~~~~ 173 (251)
T TIGR01969 125 VTALAAADELLLVVNPEI-SSITDALKTK-IVAEK---LGTAILGVVLNRVTRD 173 (251)
T ss_pred HHHHHhCCeEEEEECCCC-chHHHHHHHH-HHHHh---cCCceEEEEEECCCch
Confidence 344667999999998763 3444332222 22222 233 356999999853
No 451
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=29.38 E-value=1.3e+02 Score=18.01 Aligned_cols=50 Identities=8% Similarity=0.070 Sum_probs=31.2
Q ss_pred HhcccCCEEEEEEECCChhhHHHHHHHHHHHhcC--------------CCCCCCeEEEEeeCCC
Q 044598 7 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNE--------------DELRDAVLLVFANKQD 56 (110)
Q Consensus 7 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~iiv~nK~D 56 (110)
.-+..||.+|+.+..-.-.-....+.|+..++.. ..+.+++++++.+--.
T Consensus 74 ~~l~~AD~iV~~~Pl~~~~~Pa~lK~~iD~v~~~g~~~~~~~g~~~~~~~L~gKk~~~i~t~g~ 137 (199)
T PF02525_consen 74 EELLWADHIVFAFPLYWFSMPAQLKGWIDRVFTPGFTFYTPDGKYPSGGLLKGKKALLIVTSGG 137 (199)
T ss_dssp HHHHHSSEEEEEEEEBTTBC-HHHHHHHHHHSHTTTSEEETTSTTCGEESTTTSEEEEEEEESS
T ss_pred HHHHHcCcceEeccceecccChhHHHHHHHhCcCCeeeeccccccccccccccccEEEEEcCCC
Confidence 4577899999999875433344556677776332 1234677777766544
No 452
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=29.32 E-value=89 Score=17.91 Aligned_cols=36 Identities=22% Similarity=0.218 Sum_probs=21.3
Q ss_pred EEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCC
Q 044598 16 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQD 56 (110)
Q Consensus 16 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D 56 (110)
|-|+|++ .......+.++.. ...+-.|+++++|=.-
T Consensus 24 i~viDCS----W~~l~~~f~k~~~-~~~R~LP~LvAaNPVN 59 (127)
T PF04034_consen 24 IAVIDCS----WNRLDEVFKKLRS-RNHRLLPYLVAANPVN 59 (127)
T ss_pred EEEEECc----HHHHHHHHHhcCC-CCCccCchhhccCCcc
Confidence 5678886 3333333444332 2335689999998765
No 453
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=28.58 E-value=2e+02 Score=20.29 Aligned_cols=41 Identities=20% Similarity=0.191 Sum_probs=21.9
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCC
Q 044598 11 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 58 (110)
Q Consensus 11 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 58 (110)
+.+-+++|+|++-...- ......+.+ .-.+--+++||.|-.
T Consensus 212 ~p~e~lLVlda~~Gq~a---~~~a~~F~~----~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 212 QPDNIIFVMDGSIGQAA---EAQAKAFKD----SVDVGSVIITKLDGH 252 (429)
T ss_pred CCcEEEEEeccccChhH---HHHHHHHHh----ccCCcEEEEECccCC
Confidence 45678889987632111 111111111 123567889999964
No 454
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=28.39 E-value=1.7e+02 Score=18.84 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=16.5
Q ss_pred CCeEEEEeeCCCCCCCCCHHHHH
Q 044598 45 DAVLLVFANKQDLPNAMNAAEIT 67 (110)
Q Consensus 45 ~~~~iiv~nK~Dl~~~~~~~~~~ 67 (110)
..|.|=|.+|+|+.+....+++.
T Consensus 164 E~P~INvlsKMDLlk~~~k~~l~ 186 (273)
T KOG1534|consen 164 EVPHINVLSKMDLLKDKNKKELE 186 (273)
T ss_pred cCcchhhhhHHHHhhhhhHHHHH
Confidence 68889999999997654434433
No 455
>PF13651 EcoRI_methylase: Adenine-specific methyltransferase EcoRI
Probab=28.31 E-value=1.8e+02 Score=19.73 Aligned_cols=42 Identities=10% Similarity=0.235 Sum_probs=24.9
Q ss_pred HHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCC
Q 044598 6 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 57 (110)
Q Consensus 6 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl 57 (110)
-.++..||+|+ ++|+ +.-.++.+..+++ .++.++|++|..-.
T Consensus 130 i~Ll~eADIVV-----TNPP-FSLFrEyv~~Li~----~~KkFlIIGN~Nai 171 (336)
T PF13651_consen 130 IELLKEADIVV-----TNPP-FSLFREYVAQLIE----YDKKFLIIGNINAI 171 (336)
T ss_pred HHHHhcCCEEE-----eCCC-cHHHHHHHHHHHH----hCCCEEEEeccccc
Confidence 34567788765 3442 3333344444443 36889999998654
No 456
>KOG3929 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.11 E-value=32 Score=22.56 Aligned_cols=13 Identities=15% Similarity=0.355 Sum_probs=11.7
Q ss_pred CCeEEEEeeCCCC
Q 044598 45 DAVLLVFANKQDL 57 (110)
Q Consensus 45 ~~~~iiv~nK~Dl 57 (110)
..|++||+.|.|.
T Consensus 190 P~PV~IVgsKYDv 202 (363)
T KOG3929|consen 190 PVPVVIVGSKYDV 202 (363)
T ss_pred CCceEEeccchhh
Confidence 4799999999996
No 457
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=27.90 E-value=1.5e+02 Score=18.14 Aligned_cols=51 Identities=12% Similarity=0.073 Sum_probs=29.2
Q ss_pred cccCCEEEEEEECCChhh-HHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC
Q 044598 9 FQNTQGLIFVVDSNDRDR-VVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 61 (110)
Q Consensus 9 ~~~~~~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~ 61 (110)
..+.+++|||++...... -.....++.+++...- -.-++|+++..|.....
T Consensus 81 ~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~--~k~~ivvfT~~d~~~~~ 132 (212)
T PF04548_consen 81 SPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEI--WKHTIVVFTHADELEDD 132 (212)
T ss_dssp TT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGG--GGGEEEEEEEGGGGTTT
T ss_pred cCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHH--HhHhhHHhhhccccccc
Confidence 457899999999874321 1222345555543321 24588888888865543
No 458
>smart00432 MADS MADS domain.
Probab=27.60 E-value=74 Score=15.41 Aligned_cols=16 Identities=6% Similarity=0.154 Sum_probs=12.6
Q ss_pred hcccCCEEEEEEECCC
Q 044598 8 YFQNTQGLIFVVDSND 23 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~~ 23 (110)
.+-++++++++++.+.
T Consensus 36 ~Lc~~~v~~iv~sp~g 51 (59)
T smart00432 36 VLCDAEVALIVFSPTG 51 (59)
T ss_pred hccCCeEEEEEECCCC
Confidence 4668899999998764
No 459
>PF05729 NACHT: NACHT domain
Probab=27.30 E-value=1.2e+02 Score=16.97 Aligned_cols=20 Identities=10% Similarity=0.424 Sum_probs=14.7
Q ss_pred HHHhcccCCEEEEEEECCCh
Q 044598 5 WRHYFQNTQGLIFVVDSNDR 24 (110)
Q Consensus 5 ~~~~~~~~~~~i~v~d~~~~ 24 (110)
+........-+++++|.-++
T Consensus 73 ~~~~~~~~~~~llilDglDE 92 (166)
T PF05729_consen 73 LQELLEKNKRVLLILDGLDE 92 (166)
T ss_pred HHHHHHcCCceEEEEechHh
Confidence 44556677888999998764
No 460
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=26.96 E-value=1.1e+02 Score=16.47 Aligned_cols=45 Identities=16% Similarity=0.200 Sum_probs=23.6
Q ss_pred HhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeC
Q 044598 7 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANK 54 (110)
Q Consensus 7 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK 54 (110)
..+.+....++++|-.+.-.-......+..+.. ..+.+++++++-
T Consensus 81 ~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~---~~~~~vvl~G~~ 125 (131)
T PF13401_consen 81 DALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN---ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC---SCBEEEEEEESS
T ss_pred HHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh---CCCCeEEEEECh
Confidence 345555567888886543200222233444332 246778888765
No 461
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=26.83 E-value=1.7e+02 Score=18.49 Aligned_cols=47 Identities=17% Similarity=0.147 Sum_probs=24.7
Q ss_pred cccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeE-EEEeeCCC
Q 044598 9 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVL-LVFANKQD 56 (110)
Q Consensus 9 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-iiv~nK~D 56 (110)
+..||.+|.++.++ ..++......+..+.......+.++ -++.|+.+
T Consensus 138 l~~AD~viip~~~~-~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~ 185 (270)
T PRK13185 138 LQYADYALIVTAND-FDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSA 185 (270)
T ss_pred hhhCcEEEEEecCc-hhhHHHHHHHHHHHHhhhhccCCCceEEEEeccC
Confidence 55689999988664 3344443332222211111134554 47889977
No 462
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=26.70 E-value=97 Score=17.30 Aligned_cols=42 Identities=14% Similarity=0.162 Sum_probs=17.5
Q ss_pred HHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEe
Q 044598 6 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFA 52 (110)
Q Consensus 6 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~ 52 (110)
+..+++|+++|+++..... .-.....++...+. .++|++.|.
T Consensus 65 ~~~i~~s~~~IVLig~~T~-~s~wV~~EI~~A~~----~~~~Ii~V~ 106 (130)
T PF08937_consen 65 RERIKNSSVTIVLIGPNTA-KSKWVNWEIEYALK----KGKPIIGVY 106 (130)
T ss_dssp HHHHHTEEEEEEE--TT-----HHHHHHHHHHTT----T---EEEEE
T ss_pred HHHHhcCCEEEEEeCCCcc-cCcHHHHHHHHHHH----CCCCEEEEE
Confidence 4567788888887765421 11222233333322 456666664
No 463
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=26.43 E-value=1.8e+02 Score=18.43 Aligned_cols=48 Identities=15% Similarity=0.136 Sum_probs=25.0
Q ss_pred cccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCe-EEEEeeCCCC
Q 044598 9 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDL 57 (110)
Q Consensus 9 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~Dl 57 (110)
+..||.+++++.++ ..++......+..+.......+.+ .-+|.|+.+.
T Consensus 136 l~aAD~vlip~~~~-~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~ 184 (268)
T TIGR01281 136 LQYADYALVVAAND-FDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDA 184 (268)
T ss_pred hhhcCEEEEEecCc-hhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCCh
Confidence 56788888887653 333443333222221111113344 4578899874
No 464
>COG3613 Nucleoside 2-deoxyribosyltransferase [Nucleotide transport and metabolism]
Probab=26.04 E-value=1.5e+02 Score=17.98 Aligned_cols=17 Identities=6% Similarity=0.077 Sum_probs=14.3
Q ss_pred HhcccCCEEEEEEECCC
Q 044598 7 HYFQNTQGLIFVVDSND 23 (110)
Q Consensus 7 ~~~~~~~~~i~v~d~~~ 23 (110)
..+.+||++|.++|..+
T Consensus 64 ~~i~~aD~vla~ld~fr 80 (172)
T COG3613 64 KLIDQADIVLANLDPFR 80 (172)
T ss_pred HHHhhcCEEEEecCCCC
Confidence 34678999999999887
No 465
>PRK07308 flavodoxin; Validated
Probab=25.10 E-value=1.4e+02 Score=16.90 Aligned_cols=44 Identities=14% Similarity=0.127 Sum_probs=23.3
Q ss_pred cccCCEEEEEEECCChhh-HHHHHHHHHHHhcCCCCCCCeEEEEee
Q 044598 9 FQNTQGLIFVVDSNDRDR-VVEARDELHRMLNEDELRDAVLLVFAN 53 (110)
Q Consensus 9 ~~~~~~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~iiv~n 53 (110)
+.+.+++++......... ......++..+ ....+.++++.++++
T Consensus 46 l~~~d~vi~g~~t~g~G~~p~~~~~fl~~l-~~~~l~~k~~~vfG~ 90 (146)
T PRK07308 46 FEDADIAIVATYTYGDGELPDEIVDFYEDL-ADLDLSGKIYGVVGS 90 (146)
T ss_pred hccCCEEEEEeCccCCCCCCHHHHHHHHHH-hcCCCCCCEEEEEee
Confidence 456788888665432111 22334444443 333446778777776
No 466
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=24.82 E-value=68 Score=13.56 Aligned_cols=13 Identities=15% Similarity=0.478 Sum_probs=6.7
Q ss_pred cccCCEEEEEEEC
Q 044598 9 FQNTQGLIFVVDS 21 (110)
Q Consensus 9 ~~~~~~~i~v~d~ 21 (110)
+...|+-++++|+
T Consensus 26 v~~~dg~l~ald~ 38 (40)
T PF13570_consen 26 VGTGDGNLYALDA 38 (40)
T ss_dssp EE-TTSEEEEEET
T ss_pred EEcCCCEEEEEeC
Confidence 3444566666664
No 467
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=24.65 E-value=2.9e+02 Score=20.41 Aligned_cols=59 Identities=14% Similarity=0.008 Sum_probs=34.5
Q ss_pred CCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEEeeecccCCCHHHHHHHHHHHHH
Q 044598 44 RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 44 ~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
.+.|++++.|+.........+.+.+... ...-...+-..=++-|+|-.++-+.+.+.+.
T Consensus 400 fg~pvVVaiN~F~~Dt~~Ei~~l~~~~~---~~g~~~~v~~~wa~GGeGa~eLA~~Vv~a~e 458 (587)
T PRK13507 400 SGINPVVCINAFYTDTHAEIAIVRRLAE---QAGARVAVSRHWEKGGEGALELADAVIDACN 458 (587)
T ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHH---HcCCCEEEechhhccchhHHHHHHHHHHHhh
Confidence 5899999999987532222222233221 0111223334446788888888888877665
No 468
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=24.56 E-value=1.7e+02 Score=17.74 Aligned_cols=41 Identities=15% Similarity=0.234 Sum_probs=17.8
Q ss_pred cccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEe-eCCC
Q 044598 9 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFA-NKQD 56 (110)
Q Consensus 9 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~-nK~D 56 (110)
+..+|.|+++..-++...... ...++ .. .+.|++.|. |+.|
T Consensus 79 lt~~DRVllfs~~~~~~e~~~---~a~~L-~~---~gi~~v~Vs~~~~~ 120 (172)
T PF10740_consen 79 LTETDRVLLFSPFSTDEEAVA---LAKQL-IE---QGIPFVGVSPNKPD 120 (172)
T ss_dssp --TT-EEEEEES-S--HHHHH---HHHHH-HH---HT--EEEEE-SS--
T ss_pred ccccceEEEEeCCCCCHHHHH---HHHHH-HH---CCCCEEEEEecCCC
Confidence 678899998886554322211 12222 12 478999999 5554
No 469
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=24.29 E-value=1.4e+02 Score=16.56 Aligned_cols=16 Identities=25% Similarity=0.289 Sum_probs=12.6
Q ss_pred ccCCEEEEEEECCChh
Q 044598 10 QNTQGLIFVVDSNDRD 25 (110)
Q Consensus 10 ~~~~~~i~v~d~~~~~ 25 (110)
.++|.+++.-|..+..
T Consensus 18 ~~~D~vi~~GD~~~~~ 33 (135)
T cd07379 18 PDGDVLIHAGDLTERG 33 (135)
T ss_pred CCCCEEEECCCCCCCC
Confidence 5789999999987543
No 470
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.25 E-value=1.2e+02 Score=20.87 Aligned_cols=44 Identities=11% Similarity=0.187 Sum_probs=27.1
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCC
Q 044598 11 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 59 (110)
Q Consensus 11 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~ 59 (110)
+.++++|.+.++. +.+...+-...+-+. ...++|-|.-|.|...
T Consensus 129 RVH~cLYFI~P~g-hgL~p~Di~~Mk~l~----~~vNiIPVI~KaD~lT 172 (366)
T KOG2655|consen 129 RVHCCLYFISPTG-HGLKPLDIEFMKKLS----KKVNLIPVIAKADTLT 172 (366)
T ss_pred ceEEEEEEeCCCC-CCCcHhhHHHHHHHh----ccccccceeeccccCC
Confidence 6889999998764 233333322211111 3577888889999754
No 471
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=24.02 E-value=2.3e+02 Score=18.95 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=27.2
Q ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCC
Q 044598 10 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 58 (110)
Q Consensus 10 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 58 (110)
.++|++++.++-.. .+...++..+++.. .++..+++++.|-|-.
T Consensus 36 ~~~d~~l~~~pK~~----~e~e~qLa~ll~~~-~~g~~i~v~g~~~~g~ 79 (300)
T COG2813 36 DDFDAVLLYWPKHK----AEAEFQLAQLLARL-PPGGEIVVVGEKRDGV 79 (300)
T ss_pred CCCCEEEEEccCch----HHHHHHHHHHHhhC-CCCCeEEEEecccchH
Confidence 36888998886543 22233344444332 2578899999888753
No 472
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=23.95 E-value=2.9e+02 Score=20.12 Aligned_cols=59 Identities=14% Similarity=0.024 Sum_probs=34.4
Q ss_pred CCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEEeeecccCCCHHHHHHHHHHHHH
Q 044598 44 RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 44 ~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
.+.|+++..|+.........+.+.+.+.. ..-...+.+.=++-|+|-.++-+.+.+.+.
T Consensus 355 fg~p~VVaiN~F~~Dt~~Ei~~v~~~~~~---~g~~~~~~~~~~~GG~Ga~eLA~~Vi~a~e 413 (524)
T cd00477 355 FGVPVVVAINKFSTDTDAELALVRKLAEE---AGAFVAVSEHWAEGGKGAVELAEAVIEACE 413 (524)
T ss_pred cCCCeEEEecCCCCCCHHHHHHHHHHHHH---cCCCEEEehhhhhhhhhHHHHHHHHHHHhc
Confidence 57999999999875322222222332210 111222334446788888888888877665
No 473
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=23.89 E-value=1.4e+02 Score=16.44 Aligned_cols=46 Identities=4% Similarity=0.090 Sum_probs=23.7
Q ss_pred hcccCCEEEEEEECCChhhH--HHHHHHHHHHhcCCCCCCCeEEEEeeC
Q 044598 8 YFQNTQGLIFVVDSNDRDRV--VEARDELHRMLNEDELRDAVLLVFANK 54 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~iiv~nK 54 (110)
.+..+|.+++.......... .....++..+. .....++++.++++-
T Consensus 42 ~l~~~d~iilgspty~~g~~p~~~~~~f~~~l~-~~~~~gk~~~vfgt~ 89 (140)
T TIGR01753 42 DLLSYDAVLLGCSTWGDEDLEQDDFEPFFEELE-DIDLGGKKVALFGSG 89 (140)
T ss_pred HHhcCCEEEEEcCCCCCCCCCcchHHHHHHHhh-hCCCCCCEEEEEecC
Confidence 34568888887765321111 22233333332 222357788777764
No 474
>PF06319 DUF1052: Protein of unknown function (DUF1052); InterPro: IPR009394 This entry is represented by Ralstonia phage RSL1, Orf212. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial proteins of unknown function.; PDB: 3DNX_A.
Probab=23.74 E-value=1.1e+02 Score=18.27 Aligned_cols=20 Identities=20% Similarity=0.516 Sum_probs=15.8
Q ss_pred chHHHhcccCCEEEEEEECC
Q 044598 3 PLWRHYFQNTQGLIFVVDSN 22 (110)
Q Consensus 3 ~~~~~~~~~~~~~i~v~d~~ 22 (110)
..|+.|..-||.+.|.++..
T Consensus 78 ~KW~dY~~~CDRfyfAv~~~ 97 (157)
T PF06319_consen 78 RKWPDYLDWCDRFYFAVPPD 97 (157)
T ss_dssp TTGGGGGGG-SEEEEEE-TT
T ss_pred CcchHHHHhhceeEEecCCC
Confidence 36999999999999999765
No 475
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=23.67 E-value=66 Score=12.61 Aligned_cols=15 Identities=27% Similarity=0.731 Sum_probs=10.4
Q ss_pred hcccCCEEEEEEECC
Q 044598 8 YFQNTQGLIFVVDSN 22 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~ 22 (110)
|+...++.++.+|..
T Consensus 10 ~~~~~~g~l~a~d~~ 24 (33)
T smart00564 10 YVGSTDGTLYALDAK 24 (33)
T ss_pred EEEcCCCEEEEEEcc
Confidence 455667788888764
No 476
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=23.19 E-value=1.8e+02 Score=18.84 Aligned_cols=38 Identities=24% Similarity=0.293 Sum_probs=22.7
Q ss_pred EEEEEEECCChh-hHHHHHHHHHHHhcCCCCCCCeEEEEeeCC
Q 044598 14 GLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQ 55 (110)
Q Consensus 14 ~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~ 55 (110)
-=|+++|..... .+..+...+..+.+ .+..+++|++|.
T Consensus 36 ngihIIDL~kT~~~l~~A~~~v~~~~~----~~g~ILfVgTK~ 74 (252)
T COG0052 36 NGIHIIDLQKTLERLREAYKFLRRIAA----NGGKILFVGTKK 74 (252)
T ss_pred CCcEEEEHHHHHHHHHHHHHHHHHHHc----CCCEEEEEechH
Confidence 346888875432 23444444444432 357799999994
No 477
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=22.96 E-value=1.3e+02 Score=16.69 Aligned_cols=14 Identities=21% Similarity=0.358 Sum_probs=11.2
Q ss_pred CCCeEEEEeeCCCC
Q 044598 44 RDAVLLVFANKQDL 57 (110)
Q Consensus 44 ~~~~~iiv~nK~Dl 57 (110)
.++|++.+.+|.+|
T Consensus 68 ~~Ip~~~~~sk~eL 81 (117)
T TIGR03677 68 KGIPYVYVKKKEDL 81 (117)
T ss_pred cCCCEEEeCCHHHH
Confidence 57999999888665
No 478
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=22.87 E-value=2.1e+02 Score=18.03 Aligned_cols=44 Identities=7% Similarity=0.110 Sum_probs=27.3
Q ss_pred ccCCEEEEEEECCChh-hHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCC
Q 044598 10 QNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDL 57 (110)
Q Consensus 10 ~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl 57 (110)
+++|.++.+-|.++.. ..++....+..+ .. .+.|++.|---+|.
T Consensus 30 ~~~D~vv~~GDl~~~g~~~~~~~~~l~~l-~~---l~~pv~~V~GNhD~ 74 (224)
T cd07388 30 TGADAIVLIGNLLPKAAKSEDYAAFFRIL-GE---AHLPTFYVPGPQDA 74 (224)
T ss_pred cCCCEEEECCCCCCCCCCHHHHHHHHHHH-Hh---cCCceEEEcCCCCh
Confidence 4789999999998754 233333333332 11 24677777777774
No 479
>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=22.28 E-value=84 Score=15.19 Aligned_cols=16 Identities=6% Similarity=0.169 Sum_probs=12.3
Q ss_pred hcccCCEEEEEEECCC
Q 044598 8 YFQNTQGLIFVVDSND 23 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~~ 23 (110)
.+-++++++++++.+.
T Consensus 36 ~Lc~~~v~~iv~sp~g 51 (59)
T cd00120 36 VLCDAEVAVIVFSPSG 51 (59)
T ss_pred eccCCcEEEEEECCCC
Confidence 3567889999998764
No 480
>COG3106 Predicted ATPase [General function prediction only]
Probab=22.15 E-value=2.9e+02 Score=19.39 Aligned_cols=56 Identities=23% Similarity=0.274 Sum_probs=34.1
Q ss_pred chHHHhcccCCEEEEEEECCCh-----hhHHHHHHHHHHHhcCCCC------------CCCeEEEEeeCCCCC
Q 044598 3 PLWRHYFQNTQGLIFVVDSNDR-----DRVVEARDELHRMLNEDEL------------RDAVLLVFANKQDLP 58 (110)
Q Consensus 3 ~~~~~~~~~~~~~i~v~d~~~~-----~~~~~~~~~~~~~~~~~~~------------~~~~~iiv~nK~Dl~ 58 (110)
++.+.|+..-|-=|.++|+-.+ +.+.+...-+..++..-.. .--.++++.+|.|=.
T Consensus 272 ~FyrehfarfDRQIVLvDclqplN~g~qaf~Dm~~AL~ql~~~F~yG~~~ll~rLfsp~IDkllfaATKADHv 344 (467)
T COG3106 272 GFYREHFARFDRQIVLVDCLQPLNRGPQAFLDMRLALTQLMQSFHYGQRTLLRRLFSPRIDKLLFAATKADHV 344 (467)
T ss_pred HHHHHHHHhhcceEEehhhccccccChHHHHHHHHHHHHHHHhcCCCchHHHHHHhhhhhceeeeeeeccccc
Confidence 4567788889999999998653 3344444334443332100 112578999999954
No 481
>PRK06703 flavodoxin; Provisional
Probab=21.38 E-value=1.7e+02 Score=16.61 Aligned_cols=44 Identities=18% Similarity=0.164 Sum_probs=22.0
Q ss_pred cccCCEEEEEEECCChhh-HHHHHHHHHHHhcCCCCCCCeEEEEee
Q 044598 9 FQNTQGLIFVVDSNDRDR-VVEARDELHRMLNEDELRDAVLLVFAN 53 (110)
Q Consensus 9 ~~~~~~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~iiv~n 53 (110)
+.+.|.++++........ ......++..+. .....++++.++++
T Consensus 46 l~~~d~viigspt~~~g~~p~~~~~f~~~l~-~~~l~~k~~~vfg~ 90 (151)
T PRK06703 46 LLAYDGIILGSYTWGDGDLPYEAEDFHEDLE-NIDLSGKKVAVFGS 90 (151)
T ss_pred HhcCCcEEEEECCCCCCcCcHHHHHHHHHHh-cCCCCCCEEEEEcc
Confidence 567788888775432111 122233333322 22335678777764
No 482
>PF13134 DUF3948: Protein of unknown function (DUF3948)
Probab=21.09 E-value=92 Score=13.27 Aligned_cols=15 Identities=13% Similarity=0.124 Sum_probs=10.6
Q ss_pred eEEEEeeCCCCCCCC
Q 044598 47 VLLVFANKQDLPNAM 61 (110)
Q Consensus 47 ~~iiv~nK~Dl~~~~ 61 (110)
.-++-+||.|+.+..
T Consensus 4 ~qvlq~tK~D~lgsa 18 (35)
T PF13134_consen 4 EQVLQVTKMDFLGSA 18 (35)
T ss_pred cceEEEechhhhhcc
Confidence 346778999986544
No 483
>PF11524 SeleniumBinding: Selenium binding protein; InterPro: IPR021603 Selenium is an important nutrient which needs to be regulated since lack of the nutrient leads to cell abnormalities and high concentrations are toxic.SeBP regulates the level of free selenium in the cell by sequestering the nutrient during transport. SeBP acts as a pentamer and delivers the selenium to the selenophosphate synthetase enzyme []. Each subunit is composed of an alpha helix on top of a four stranded twisted ss sheet, stabilised by hydrogen bonds []. members of this entry are restricted to the archaeal Methanococcales.; PDB: 2JZ7_D.
Probab=20.92 E-value=1.4e+02 Score=15.43 Aligned_cols=23 Identities=17% Similarity=0.128 Sum_probs=17.0
Q ss_pred eecccCCCHHHHHHHHHHHHHhhc
Q 044598 85 TCATSGEGLYEGLDWLSNNIANKV 108 (110)
Q Consensus 85 ~Sa~~~~~i~~l~~~l~~~~~~~~ 108 (110)
+|+... |++++.+.+.+....+-
T Consensus 26 vS~~~e-nvd~li~~lee~vk~k~ 48 (81)
T PF11524_consen 26 VSEASE-NVDELIKKLEEKVKAKG 48 (81)
T ss_dssp EEEBSS-SHHHHHHHHHHHHHHTT
T ss_pred HHHHHh-hHHHHHHHHHHHHHhCC
Confidence 344333 99999999999887654
No 484
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=20.82 E-value=49 Score=17.69 Aligned_cols=39 Identities=13% Similarity=0.322 Sum_probs=21.0
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCC
Q 044598 11 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 57 (110)
Q Consensus 11 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl 57 (110)
++|++++.-+ ..+....+.+..+.+ .++|++++-|-...
T Consensus 4 D~dGvl~~g~----~~ipga~e~l~~L~~----~g~~~~~lTNns~~ 42 (101)
T PF13344_consen 4 DLDGVLYNGN----EPIPGAVEALDALRE----RGKPVVFLTNNSSR 42 (101)
T ss_dssp ESTTTSEETT----EE-TTHHHHHHHHHH----TTSEEEEEES-SSS
T ss_pred eCccEeEeCC----CcCcCHHHHHHHHHH----cCCCEEEEeCCCCC
Confidence 4555555421 123444444555432 47999999998754
No 485
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=20.38 E-value=2.1e+02 Score=17.04 Aligned_cols=38 Identities=11% Similarity=0.207 Sum_probs=22.2
Q ss_pred EEEEECC--ChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCC
Q 044598 16 IFVVDSN--DRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 55 (110)
Q Consensus 16 i~v~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~ 55 (110)
+|++.+. .|.++++-.+|+.+..-. ...-.+++++||.
T Consensus 86 vYivtaamdhp~s~~dK~eWl~E~FPF--i~~qn~vfCgnKn 125 (180)
T COG4502 86 VYIVTAAMDHPKSCEDKGEWLKEKFPF--ISYQNIVFCGNKN 125 (180)
T ss_pred EEEEEeccCCchhHHHHHHHHHHHCCC--CChhhEEEecCCC
Confidence 3444433 566677666777765322 2234588888885
Done!