Query 044598
Match_columns 110
No_of_seqs 126 out of 1506
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 08:08:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044598.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044598hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l82_B F-box only protein 4; T 99.9 6.5E-23 2.2E-27 122.1 8.2 105 1-107 115-224 (227)
2 1r8s_A ADP-ribosylation factor 99.9 3.8E-21 1.3E-25 110.9 12.7 107 1-107 57-163 (164)
3 1fzq_A ADP-ribosylation factor 99.9 2.6E-21 8.9E-26 113.8 12.1 107 1-107 73-179 (181)
4 2b6h_A ADP-ribosylation factor 99.9 6.7E-21 2.3E-25 113.0 13.0 106 1-106 86-191 (192)
5 1upt_A ARL1, ADP-ribosylation 99.9 1.2E-20 4.1E-25 109.4 13.1 107 1-107 64-170 (171)
6 1ksh_A ARF-like protein 2; sma 99.9 1.6E-20 5.5E-25 110.5 13.0 106 2-107 76-181 (186)
7 1moz_A ARL1, ADP-ribosylation 99.9 2.1E-20 7.3E-25 109.6 13.3 107 1-107 75-181 (183)
8 1zj6_A ADP-ribosylation factor 99.9 2.4E-20 8.1E-25 110.0 12.8 106 1-106 73-178 (187)
9 2x77_A ADP-ribosylation factor 99.9 2.1E-20 7.2E-25 110.3 12.4 107 1-107 79-185 (189)
10 1f6b_A SAR1; gtpases, N-termin 99.9 3.4E-20 1.1E-24 110.5 12.6 104 1-104 82-197 (198)
11 4bas_A ADP-ribosylation factor 99.8 1E-20 3.4E-25 112.2 10.1 108 1-108 76-191 (199)
12 2h17_A ADP-ribosylation factor 99.8 2.8E-20 9.5E-25 109.2 11.8 103 1-103 78-180 (181)
13 1zd9_A ADP-ribosylation factor 99.8 2.9E-20 1E-24 109.8 11.8 106 2-107 81-186 (188)
14 2h57_A ADP-ribosylation factor 99.8 7.3E-20 2.5E-24 108.1 13.4 106 1-106 80-187 (190)
15 1m2o_B GTP-binding protein SAR 99.8 4E-20 1.4E-24 109.5 12.1 103 1-103 80-189 (190)
16 3l2o_B F-box only protein 4; s 99.8 2.4E-21 8.3E-26 120.3 6.6 105 1-107 200-309 (312)
17 4dkx_A RAS-related protein RAB 99.8 2.5E-20 8.6E-25 112.6 9.2 100 1-106 75-176 (216)
18 3lvq_E ARF-GAP with SH3 domain 99.8 2.2E-19 7.4E-24 119.5 13.2 107 1-107 379-485 (497)
19 3o47_A ADP-ribosylation factor 99.8 1.9E-19 6.5E-24 114.7 12.2 107 1-107 222-328 (329)
20 3t1o_A Gliding protein MGLA; G 99.8 1.1E-18 3.8E-23 103.1 11.9 101 1-108 87-194 (198)
21 3q72_A GTP-binding protein RAD 99.8 1.6E-18 5.3E-23 100.1 11.2 102 1-107 62-165 (166)
22 2hup_A RAS-related protein RAB 99.8 3E-18 1E-22 102.2 10.2 102 1-108 91-195 (201)
23 2fu5_C RAS-related protein RAB 99.8 4.1E-18 1.4E-22 99.9 9.8 101 1-107 70-172 (183)
24 3kkq_A RAS-related protein M-R 99.8 3E-18 1E-22 100.4 8.9 102 1-107 79-183 (183)
25 1u8z_A RAS-related protein RAL 99.8 3.5E-18 1.2E-22 98.5 8.8 101 1-106 65-167 (168)
26 2nzj_A GTP-binding protein REM 99.8 1.2E-17 4.2E-22 97.0 11.1 101 2-107 68-170 (175)
27 3q85_A GTP-binding protein REM 99.8 5.8E-18 2E-22 98.0 9.6 99 4-107 68-168 (169)
28 1x3s_A RAS-related protein RAB 99.8 1.2E-17 4.1E-22 98.6 10.9 102 1-107 77-179 (195)
29 3dz8_A RAS-related protein RAB 99.8 7.1E-18 2.4E-22 99.7 9.8 102 1-108 85-188 (191)
30 2a5j_A RAS-related protein RAB 99.8 8.1E-18 2.8E-22 99.4 10.0 102 1-108 83-186 (191)
31 3tkl_A RAS-related protein RAB 99.8 1.3E-17 4.3E-22 98.6 10.9 102 1-108 78-181 (196)
32 4dsu_A GTPase KRAS, isoform 2B 99.8 8.2E-18 2.8E-22 98.8 9.9 102 1-107 65-167 (189)
33 3cbq_A GTP-binding protein REM 99.8 1.4E-17 4.7E-22 99.0 10.7 99 4-107 89-189 (195)
34 3t5g_A GTP-binding protein RHE 99.8 6.2E-18 2.1E-22 98.9 8.7 103 1-108 67-171 (181)
35 2a9k_A RAS-related protein RAL 99.8 9E-18 3.1E-22 98.4 9.3 102 1-107 79-182 (187)
36 2g3y_A GTP-binding protein GEM 99.8 1.3E-17 4.6E-22 100.3 10.1 100 3-107 103-204 (211)
37 3bc1_A RAS-related protein RAB 99.7 1.1E-17 3.6E-22 98.6 9.3 101 2-107 84-186 (195)
38 1ek0_A Protein (GTP-binding pr 99.7 6.1E-19 2.1E-23 101.9 3.8 100 1-106 65-169 (170)
39 2bov_A RAla, RAS-related prote 99.7 1.9E-17 6.6E-22 98.5 10.4 101 1-106 75-177 (206)
40 2fn4_A P23, RAS-related protei 99.7 1.2E-17 4.1E-22 97.4 9.3 102 1-107 70-173 (181)
41 2efe_B Small GTP-binding prote 99.7 2.4E-17 8.4E-22 96.2 10.6 100 1-106 74-175 (181)
42 2bcg_Y Protein YP2, GTP-bindin 99.7 3.2E-17 1.1E-21 97.8 11.2 101 1-107 70-172 (206)
43 2f7s_A C25KG, RAS-related prot 99.7 9.9E-18 3.4E-22 100.7 9.0 101 2-107 98-200 (217)
44 1g16_A RAS-related protein SEC 99.7 1.1E-17 3.7E-22 96.7 8.7 102 1-108 65-167 (170)
45 1c1y_A RAS-related protein RAP 99.7 1.2E-17 4.2E-22 96.3 8.9 101 1-105 64-166 (167)
46 2oil_A CATX-8, RAS-related pro 99.7 3.2E-17 1.1E-21 96.9 10.8 102 1-108 87-190 (193)
47 2gf9_A RAS-related protein RAB 99.7 2.4E-17 8.3E-22 97.2 10.2 102 1-108 84-187 (189)
48 1z0f_A RAB14, member RAS oncog 99.7 3.4E-17 1.2E-21 95.3 10.5 100 1-106 77-178 (179)
49 1r2q_A RAS-related protein RAB 99.7 1.6E-17 5.5E-22 95.9 8.9 99 1-105 68-168 (170)
50 2bme_A RAB4A, RAS-related prot 99.7 2.2E-17 7.6E-22 96.8 9.6 101 2-108 73-175 (186)
51 3oes_A GTPase rhebl1; small GT 99.7 9.5E-18 3.3E-22 99.9 8.0 102 1-107 85-188 (201)
52 2ew1_A RAS-related protein RAB 99.7 1.5E-17 5.2E-22 99.3 8.8 102 1-108 88-191 (201)
53 1zbd_A Rabphilin-3A; G protein 99.7 3.7E-17 1.3E-21 97.3 10.3 100 2-107 71-172 (203)
54 3ihw_A Centg3; RAS, centaurin, 99.7 5.9E-17 2E-21 95.4 10.8 97 8-108 82-182 (184)
55 2fg5_A RAB-22B, RAS-related pr 99.7 3.1E-17 1.1E-21 97.0 9.7 101 1-107 85-187 (192)
56 2g6b_A RAS-related protein RAB 99.7 3.1E-17 1.1E-21 95.7 9.5 101 1-107 73-175 (180)
57 2o52_A RAS-related protein RAB 99.7 2.7E-17 9.3E-22 97.9 9.2 101 2-108 88-190 (200)
58 3clv_A RAB5 protein, putative; 99.7 1.2E-16 4.3E-21 94.6 11.9 100 1-108 106-206 (208)
59 2ce2_X GTPase HRAS; signaling 99.7 3.9E-17 1.3E-21 93.8 9.3 101 1-106 64-165 (166)
60 2il1_A RAB12; G-protein, GDP, 99.7 6.6E-17 2.3E-21 95.7 10.3 101 2-107 89-191 (192)
61 2yc2_C IFT27, small RAB-relate 99.7 2.6E-17 8.8E-22 98.0 8.5 101 2-107 87-193 (208)
62 3tw8_B RAS-related protein RAB 99.7 4.8E-17 1.6E-21 94.8 9.4 100 1-107 71-172 (181)
63 2atv_A RERG, RAS-like estrogen 99.7 2.6E-17 8.9E-22 97.6 8.2 100 3-107 90-192 (196)
64 1z08_A RAS-related protein RAB 99.7 2E-17 6.8E-22 95.7 7.5 99 2-106 69-169 (170)
65 3cpj_B GTP-binding protein YPT 99.7 3.5E-17 1.2E-21 98.9 8.9 102 1-108 75-178 (223)
66 1cip_A Protein (guanine nucleo 99.7 1E-17 3.5E-22 107.5 6.7 107 1-107 206-345 (353)
67 1z0j_A RAB-22, RAS-related pro 99.7 8.1E-17 2.8E-21 93.0 10.0 99 1-105 68-168 (170)
68 3reg_A RHO-like small GTPase; 99.7 2.9E-17 1E-21 97.1 8.2 100 1-107 84-189 (194)
69 2p5s_A RAS and EF-hand domain 99.7 2.8E-17 9.5E-22 97.7 8.1 101 1-107 90-198 (199)
70 3gj0_A GTP-binding nuclear pro 99.7 2.2E-17 7.4E-22 99.6 7.6 101 1-108 77-177 (221)
71 2cjw_A GTP-binding protein GEM 99.7 1.2E-16 4E-21 94.7 10.6 100 2-106 71-172 (192)
72 2hxs_A RAB-26, RAS-related pro 99.7 9.3E-17 3.2E-21 93.5 9.7 102 1-107 69-174 (178)
73 1z2a_A RAS-related protein RAB 99.7 3.1E-17 1.1E-21 94.6 7.5 99 1-106 67-167 (168)
74 1kao_A RAP2A; GTP-binding prot 99.7 1.8E-17 6.1E-22 95.4 6.4 101 1-106 64-166 (167)
75 4djt_A GTP-binding nuclear pro 99.7 1.2E-16 4.2E-21 96.0 10.3 101 1-107 74-176 (218)
76 2atx_A Small GTP binding prote 99.7 1.1E-16 3.9E-21 94.5 10.0 98 1-105 79-192 (194)
77 3cph_A RAS-related protein SEC 99.7 5.5E-17 1.9E-21 97.0 8.6 100 2-107 83-183 (213)
78 3q3j_B RHO-related GTP-binding 99.7 3.1E-17 1.1E-21 98.7 7.5 100 1-107 88-204 (214)
79 1wms_A RAB-9, RAB9, RAS-relate 99.7 1.2E-16 4E-21 93.0 9.6 102 2-107 70-175 (177)
80 1ky3_A GTP-binding protein YPT 99.7 9E-17 3.1E-21 93.7 9.1 103 1-107 71-179 (182)
81 1zcb_A G alpha I/13; GTP-bindi 99.7 3E-17 1E-21 105.6 7.2 106 1-106 214-353 (362)
82 3con_A GTPase NRAS; structural 99.7 1.2E-16 4.2E-21 94.1 9.3 101 2-107 83-184 (190)
83 2iwr_A Centaurin gamma 1; ANK 99.7 6.6E-16 2.3E-20 90.0 12.1 97 6-107 67-170 (178)
84 1z06_A RAS-related protein RAB 99.7 5.8E-17 2E-21 95.5 7.7 99 3-106 85-188 (189)
85 3l0i_B RAS-related protein RAB 99.7 7E-18 2.4E-22 100.3 3.7 103 1-109 95-199 (199)
86 1vg8_A RAS-related protein RAB 99.7 9.2E-17 3.2E-21 95.7 8.5 102 2-107 71-176 (207)
87 2y8e_A RAB-protein 6, GH09086P 99.7 6.3E-17 2.1E-21 94.2 7.6 100 1-106 76-177 (179)
88 2q3h_A RAS homolog gene family 99.7 1.8E-16 6E-21 94.2 9.4 100 1-107 81-196 (201)
89 2gco_A H9, RHO-related GTP-bin 99.7 2.2E-16 7.4E-21 94.0 9.4 98 1-105 86-199 (201)
90 3c5h_A Glucocorticoid receptor 99.7 1.8E-17 6.3E-22 102.2 4.7 91 11-105 162-254 (255)
91 2j1l_A RHO-related GTP-binding 99.7 1.8E-16 6.2E-21 95.3 7.8 100 1-107 95-210 (214)
92 3bwd_D RAC-like GTP-binding pr 99.7 1E-16 3.4E-21 93.7 6.4 98 1-105 69-180 (182)
93 2gf0_A GTP-binding protein DI- 99.7 1.3E-16 4.4E-21 94.5 6.9 101 1-106 69-171 (199)
94 2j0v_A RAC-like GTP-binding pr 99.7 8.9E-17 3E-21 96.2 6.3 100 1-107 70-181 (212)
95 2fv8_A H6, RHO-related GTP-bin 99.7 5E-16 1.7E-20 92.8 9.1 105 1-107 86-201 (207)
96 4gzl_A RAS-related C3 botulinu 99.7 1.1E-16 3.7E-21 95.6 5.9 102 1-104 91-203 (204)
97 1mh1_A RAC1; GTP-binding, GTPa 99.7 3.2E-16 1.1E-20 91.8 7.5 98 2-106 67-180 (186)
98 1m7b_A RND3/RHOE small GTP-bin 99.7 2.3E-16 8E-21 92.6 6.8 99 1-106 68-183 (184)
99 3c5c_A RAS-like protein 12; GD 99.7 3.1E-16 1.1E-20 92.5 7.3 96 6-106 86-186 (187)
100 2erx_A GTP-binding protein DI- 99.7 1.5E-16 5.1E-21 92.0 5.8 101 1-106 64-167 (172)
101 3ohm_A Guanine nucleotide-bind 99.7 2.2E-16 7.7E-21 100.3 6.9 107 1-107 180-319 (327)
102 2fh5_B SR-beta, signal recogni 99.7 2.2E-15 7.6E-20 90.2 10.6 100 4-103 71-213 (214)
103 2xtz_A Guanine nucleotide-bind 99.6 8.7E-17 3E-21 103.2 3.7 106 1-106 196-345 (354)
104 1gwn_A RHO-related GTP-binding 99.6 5.2E-16 1.8E-20 92.8 6.8 99 1-106 89-204 (205)
105 1u0l_A Probable GTPase ENGC; p 99.6 2.3E-16 8E-21 99.4 5.4 96 1-103 74-170 (301)
106 1azs_C GS-alpha; complex (lyas 99.6 4.1E-16 1.4E-20 101.3 5.4 106 1-106 230-385 (402)
107 3llu_A RAS-related GTP-binding 99.6 8.2E-16 2.8E-20 91.2 6.2 96 6-104 90-195 (196)
108 4fid_A G protein alpha subunit 99.6 2E-15 6.8E-20 96.3 5.6 106 1-106 174-328 (340)
109 2wkq_A NPH1-1, RAS-related C3 99.6 1.1E-14 3.8E-19 92.2 8.7 98 2-106 217-330 (332)
110 3th5_A RAS-related C3 botulinu 99.4 1.4E-16 4.9E-21 94.9 0.0 102 1-104 91-203 (204)
111 2lkc_A Translation initiation 99.6 2.9E-14 1E-18 82.9 9.1 100 1-106 68-171 (178)
112 2zej_A Dardarin, leucine-rich 99.6 1.5E-15 5.3E-20 89.2 3.5 104 2-107 70-179 (184)
113 1svi_A GTP-binding protein YSX 99.6 6.6E-15 2.3E-19 86.9 5.9 95 2-105 93-194 (195)
114 3pqc_A Probable GTP-binding pr 99.5 4.4E-15 1.5E-19 87.5 4.1 98 3-106 93-194 (195)
115 2qu8_A Putative nucleolar GTP- 99.5 3.2E-14 1.1E-18 86.2 7.1 96 6-106 103-205 (228)
116 2dyk_A GTP-binding protein; GT 99.5 1.2E-14 4E-19 83.3 4.4 89 3-104 71-160 (161)
117 2gj8_A MNME, tRNA modification 99.5 1.6E-14 5.5E-19 84.1 4.2 87 7-105 79-165 (172)
118 3r7w_B Gtpase2, GTP-binding pr 99.5 8.2E-14 2.8E-18 88.4 6.7 100 4-106 65-174 (331)
119 2yv5_A YJEQ protein; hydrolase 99.5 4.9E-14 1.7E-18 88.8 5.4 92 2-102 70-165 (302)
120 4dhe_A Probable GTP-binding pr 99.5 1.8E-14 6.3E-19 86.7 3.1 100 3-107 104-212 (223)
121 2f9l_A RAB11B, member RAS onco 99.5 1.2E-12 4E-17 77.7 10.7 99 2-106 68-168 (199)
122 3iev_A GTP-binding protein ERA 99.5 7.4E-14 2.5E-18 88.2 5.7 98 3-106 84-182 (308)
123 2cxx_A Probable GTP-binding pr 99.5 1.6E-14 5.4E-19 84.8 2.2 63 44-107 121-185 (190)
124 2wji_A Ferrous iron transport 99.5 2.7E-13 9.4E-18 78.3 7.0 86 4-104 72-163 (165)
125 1lnz_A SPO0B-associated GTP-bi 99.4 1.7E-13 5.9E-18 87.7 6.4 98 4-107 226-331 (342)
126 3dpu_A RAB family protein; roc 99.4 7.3E-13 2.5E-17 89.1 7.6 96 1-106 111-208 (535)
127 1xzp_A Probable tRNA modificat 99.4 4.5E-12 1.5E-16 84.4 10.2 88 5-105 317-404 (482)
128 1oix_A RAS-related protein RAB 99.4 5.7E-12 2E-16 74.4 9.7 97 2-104 92-190 (191)
129 4dcu_A GTP-binding protein ENG 99.4 4.2E-13 1.4E-17 88.7 4.9 96 7-107 273-370 (456)
130 1wf3_A GTP-binding protein; GT 99.4 5.1E-13 1.7E-17 84.2 4.8 94 3-105 78-172 (301)
131 3sjy_A Translation initiation 99.4 8.8E-13 3E-17 86.0 5.6 99 2-105 89-191 (403)
132 3r7w_A Gtpase1, GTP-binding pr 99.4 1.2E-12 4E-17 82.7 6.0 98 2-104 71-179 (307)
133 2e87_A Hypothetical protein PH 99.4 2.1E-12 7.3E-17 83.0 7.2 93 7-106 242-336 (357)
134 3iby_A Ferrous iron transport 99.4 7.1E-13 2.4E-17 81.8 4.6 85 4-103 74-164 (256)
135 2hjg_A GTP-binding protein ENG 99.4 2.4E-12 8.3E-17 84.7 7.4 95 7-106 253-349 (436)
136 2hjg_A GTP-binding protein ENG 99.3 2.5E-12 8.4E-17 84.7 6.9 91 2-105 73-164 (436)
137 3h2y_A GTPase family protein; 99.3 8.6E-13 2.9E-17 85.2 4.4 97 1-104 59-158 (368)
138 2wjg_A FEOB, ferrous iron tran 99.3 2.6E-12 9E-17 75.3 6.1 90 3-107 75-170 (188)
139 3qq5_A Small GTP-binding prote 99.3 3.5E-12 1.2E-16 83.6 6.3 89 5-105 107-195 (423)
140 3gee_A MNME, tRNA modification 99.3 8.3E-12 2.8E-16 83.0 8.1 86 6-105 307-397 (476)
141 3cb4_D GTP-binding protein LEP 99.3 9.5E-12 3.3E-16 84.6 8.5 95 2-106 85-182 (599)
142 3i8s_A Ferrous iron transport 99.3 1E-12 3.4E-17 81.8 3.4 86 5-105 77-168 (274)
143 1mky_A Probable GTP-binding pr 99.3 1E-12 3.4E-17 86.6 3.4 93 2-106 72-166 (439)
144 2ywe_A GTP-binding protein LEP 99.3 1E-11 3.5E-16 84.4 8.3 95 2-106 87-184 (600)
145 3a1s_A Iron(II) transport prot 99.3 9.8E-12 3.4E-16 76.8 6.9 85 6-105 76-166 (258)
146 3b1v_A Ferrous iron uptake tra 99.3 1.7E-11 5.9E-16 76.3 7.9 87 4-105 71-163 (272)
147 1s0u_A EIF-2-gamma, translatio 99.3 5E-11 1.7E-15 77.9 9.4 95 6-105 99-197 (408)
148 3ec1_A YQEH GTPase; atnos1, at 99.3 2.3E-12 8E-17 83.2 3.0 97 1-104 61-160 (369)
149 3izy_P Translation initiation 99.2 9.2E-12 3.2E-16 83.7 5.8 100 1-105 65-167 (537)
150 1g7s_A Translation initiation 99.2 6E-11 2.1E-15 80.7 9.2 97 1-105 83-217 (594)
151 3geh_A MNME, tRNA modification 99.2 1.9E-11 6.6E-16 81.0 6.6 86 7-106 299-384 (462)
152 3k53_A Ferrous iron transport 99.2 1.1E-10 3.6E-15 72.5 9.3 90 4-107 72-167 (271)
153 3tr5_A RF-3, peptide chain rel 99.2 6.6E-11 2.3E-15 79.6 8.3 56 1-61 95-150 (528)
154 1nrj_B SR-beta, signal recogni 99.2 2.3E-12 8E-17 77.3 0.7 61 2-62 69-137 (218)
155 1mky_A Probable GTP-binding pr 99.2 4.6E-11 1.6E-15 78.7 6.9 95 7-106 259-355 (439)
156 4dcu_A GTP-binding protein ENG 99.2 2.4E-11 8.3E-16 80.4 5.6 92 2-105 93-184 (456)
157 2qtf_A Protein HFLX, GTP-bindi 99.2 7.7E-11 2.7E-15 76.0 7.5 92 8-106 254-354 (364)
158 1wb1_A Translation elongation 99.2 6E-11 2.1E-15 79.0 6.4 94 3-105 88-188 (482)
159 1kk1_A EIF2gamma; initiation o 99.1 6E-11 2E-15 77.6 4.9 95 6-105 101-199 (410)
160 1puj_A YLQF, conserved hypothe 99.1 8E-11 2.8E-15 73.6 5.2 90 4-105 16-105 (282)
161 1ega_A Protein (GTP-binding pr 99.1 6.1E-11 2.1E-15 74.7 4.7 91 5-105 82-174 (301)
162 2aka_B Dynamin-1; fusion prote 99.1 9.2E-11 3.1E-15 73.4 5.5 96 3-104 153-251 (299)
163 1zo1_I IF2, translation initia 99.1 6.7E-11 2.3E-15 79.0 4.1 94 1-103 64-164 (501)
164 2ged_A SR-beta, signal recogni 99.1 3.5E-10 1.2E-14 66.4 6.3 67 2-68 105-179 (193)
165 2elf_A Protein translation elo 99.0 1.1E-09 3.9E-14 70.8 7.5 93 4-105 76-179 (370)
166 1jny_A EF-1-alpha, elongation 99.0 1.4E-10 4.8E-15 76.4 2.7 90 3-96 99-203 (435)
167 1zun_B Sulfate adenylate trans 99.0 2E-09 6.8E-14 70.9 7.7 91 2-96 118-214 (434)
168 3j2k_7 ERF3, eukaryotic polype 99.0 2.2E-09 7.6E-14 70.8 7.8 93 2-98 109-217 (439)
169 2c78_A Elongation factor TU-A; 99.0 2.6E-10 9E-15 74.4 3.3 98 3-105 90-211 (405)
170 1d2e_A Elongation factor TU (E 99.0 3.9E-10 1.3E-14 73.5 4.0 98 3-105 81-194 (397)
171 3p26_A Elongation factor 1 alp 99.0 1E-09 3.4E-14 73.2 5.7 91 2-95 125-227 (483)
172 1udx_A The GTP-binding protein 98.9 3.5E-09 1.2E-13 69.4 6.6 93 9-107 233-326 (416)
173 1jwy_B Dynamin A GTPase domain 98.9 2.8E-09 9.7E-14 67.2 5.9 99 3-106 159-262 (315)
174 2j69_A Bacterial dynamin-like 98.9 4.2E-09 1.4E-13 73.0 6.9 100 3-106 192-325 (695)
175 2h5e_A Peptide chain release f 98.9 2.2E-08 7.4E-13 67.5 9.9 56 1-61 95-150 (529)
176 2xtp_A GTPase IMAP family memb 98.8 4.7E-09 1.6E-13 64.6 5.4 96 6-107 100-209 (260)
177 3avx_A Elongation factor TS, e 98.8 2.5E-09 8.5E-14 77.2 3.9 98 3-105 374-485 (1289)
178 3p32_A Probable GTPase RV1496/ 98.8 1.2E-09 4E-14 70.3 1.8 91 7-106 188-284 (355)
179 1dar_A EF-G, elongation factor 98.8 6.2E-08 2.1E-12 67.2 10.1 55 1-60 90-144 (691)
180 3izq_1 HBS1P, elongation facto 98.8 3.8E-09 1.3E-13 72.2 4.0 91 3-96 260-362 (611)
181 1yrb_A ATP(GTP)binding protein 98.7 4.1E-09 1.4E-13 64.8 2.6 95 8-106 135-257 (262)
182 1r5b_A Eukaryotic peptide chai 98.7 3.5E-09 1.2E-13 70.3 2.2 92 2-97 135-243 (467)
183 3mca_A HBS1, elongation factor 98.7 2.9E-09 1E-13 72.5 1.7 97 4-104 271-395 (592)
184 3cnl_A YLQF, putative uncharac 98.7 1.3E-09 4.5E-14 67.5 -0.1 84 4-102 14-97 (262)
185 3t5d_A Septin-7; GTP-binding p 98.7 1.2E-09 4.2E-14 67.9 -0.3 88 12-105 116-203 (274)
186 2rdo_7 EF-G, elongation factor 98.7 2.3E-07 7.9E-12 64.5 10.4 55 1-60 95-149 (704)
187 2dy1_A Elongation factor G; tr 98.7 5.8E-08 2E-12 67.1 7.4 52 2-58 88-139 (665)
188 2xex_A Elongation factor G; GT 98.7 2.7E-07 9.3E-12 64.0 10.7 55 1-60 88-142 (693)
189 1f60_A Elongation factor EEF1A 98.7 1.8E-08 6.2E-13 66.8 4.7 89 3-96 100-202 (458)
190 2wsm_A Hydrogenase expression/ 98.7 3E-08 1E-12 59.4 4.7 84 11-106 129-214 (221)
191 1pui_A ENGB, probable GTP-bind 98.6 4.8E-08 1.6E-12 58.0 5.0 89 10-106 107-199 (210)
192 1t9h_A YLOQ, probable GTPase E 98.6 6.8E-09 2.3E-13 65.6 1.3 88 4-99 79-170 (307)
193 2qag_A Septin-2, protein NEDD5 98.6 8.3E-09 2.9E-13 66.5 1.2 84 13-107 147-234 (361)
194 3zvr_A Dynamin-1; hydrolase, D 98.6 4.8E-08 1.6E-12 68.2 4.6 94 4-102 179-274 (772)
195 2x2e_A Dynamin-1; nitration, h 98.6 2.4E-08 8.3E-13 64.1 2.7 95 3-102 158-254 (353)
196 2www_A Methylmalonic aciduria 98.6 2.2E-07 7.5E-12 59.7 6.9 90 7-105 183-278 (349)
197 2p67_A LAO/AO transport system 98.5 1.5E-07 5E-12 60.3 4.7 89 8-105 166-260 (341)
198 3lxw_A GTPase IMAP family memb 98.5 2.2E-07 7.5E-12 56.9 4.8 94 9-106 103-208 (247)
199 3t34_A Dynamin-related protein 98.5 8.4E-08 2.9E-12 61.7 2.8 90 2-99 163-254 (360)
200 3vqt_A RF-3, peptide chain rel 98.4 4E-06 1.4E-10 56.8 10.5 52 5-61 117-168 (548)
201 2hf9_A Probable hydrogenase ni 98.4 1.3E-07 4.5E-12 56.8 3.0 59 45-106 164-224 (226)
202 2rcn_A Probable GTPase ENGC; Y 98.3 2.2E-06 7.6E-11 55.2 6.4 86 8-100 127-213 (358)
203 3lxx_A GTPase IMAP family memb 98.2 1.6E-06 5.6E-11 52.6 4.9 96 4-106 105-214 (239)
204 3j25_A Tetracycline resistance 98.0 4.4E-06 1.5E-10 57.6 4.0 52 5-61 84-135 (638)
205 2qpt_A EH domain-containing pr 98.0 1.9E-06 6.7E-11 58.4 2.3 54 3-60 180-233 (550)
206 1wxq_A GTP-binding protein; st 98.0 3.9E-07 1.3E-11 59.5 -1.2 47 45-96 214-260 (397)
207 2qnr_A Septin-2, protein NEDD5 98.0 1.3E-06 4.5E-11 55.0 0.5 57 45-107 155-215 (301)
208 2qm8_A GTPase/ATPase; G protei 97.9 2.5E-05 8.6E-10 50.0 6.2 89 8-105 165-260 (337)
209 1n0u_A EF-2, elongation factor 97.9 1.4E-05 4.8E-10 56.7 4.7 53 1-58 111-163 (842)
210 4fn5_A EF-G 1, elongation fact 97.9 0.00013 4.5E-09 50.9 9.1 51 5-60 102-152 (709)
211 2qag_C Septin-7; cell cycle, c 97.6 3.6E-06 1.2E-10 55.3 -1.3 91 8-105 133-226 (418)
212 3def_A T7I23.11 protein; chlor 97.4 0.00014 4.9E-09 44.7 3.6 47 11-58 116-164 (262)
213 1h65_A Chloroplast outer envel 97.3 0.00024 8.1E-09 43.9 3.7 50 9-59 117-168 (270)
214 2dby_A GTP-binding protein; GD 97.1 0.0011 3.9E-08 42.9 5.6 18 6-23 94-111 (368)
215 1jal_A YCHF protein; nucleotid 96.8 0.015 5.2E-07 37.7 8.9 18 6-23 91-108 (363)
216 4a9a_A Ribosome-interacting GT 95.8 0.012 4E-07 38.3 4.2 48 8-57 146-194 (376)
217 2j37_W Signal recognition part 94.8 0.088 3E-06 35.6 5.9 85 11-103 213-310 (504)
218 4a9a_A Ribosome-interacting GT 91.3 0.96 3.3E-05 29.5 6.5 51 44-104 248-298 (376)
219 3dm5_A SRP54, signal recogniti 89.7 0.83 2.8E-05 30.5 5.2 42 11-59 212-253 (443)
220 3sop_A Neuronal-specific septi 88.6 0.33 1.1E-05 30.0 2.6 46 9-59 109-154 (270)
221 2qag_B Septin-6, protein NEDD5 86.8 0.55 1.9E-05 31.2 3.0 39 15-59 152-190 (427)
222 3u7r_A NADPH-dependent FMN red 85.3 1.9 6.4E-05 25.3 4.5 52 5-56 61-115 (190)
223 3ea0_A ATPase, para family; al 83.8 4.9 0.00017 23.8 9.8 66 5-72 134-199 (245)
224 3end_A Light-independent proto 83.5 6 0.00021 24.5 7.4 51 6-57 174-225 (307)
225 2l82_A Designed protein OR32; 81.6 3.3 0.00011 22.2 4.0 46 2-56 69-114 (162)
226 2ohf_A Protein OLA1, GTP-bindi 80.5 0.98 3.4E-05 29.7 2.2 20 4-23 109-128 (396)
227 1tq4_A IIGP1, interferon-induc 80.3 1.5 5E-05 29.0 3.0 63 44-106 174-253 (413)
228 1s2d_A Purine trans deoxyribos 79.9 5.6 0.00019 22.8 5.0 39 8-52 78-116 (167)
229 3cwq_A Para family chromosome 79.9 7 0.00024 22.9 6.3 51 5-59 84-134 (209)
230 1f8y_A Nucleoside 2-deoxyribos 77.9 4.3 0.00015 23.0 4.1 42 8-55 75-116 (157)
231 3ehd_A Uncharacterized conserv 76.0 5.5 0.00019 22.8 4.2 42 8-55 66-107 (162)
232 4dzz_A Plasmid partitioning pr 73.7 10 0.00035 21.6 5.9 51 6-58 92-143 (206)
233 4hs4_A Chromate reductase; tri 73.7 9.6 0.00033 22.3 5.0 50 6-55 68-119 (199)
234 2v3c_C SRP54, signal recogniti 69.8 13 0.00045 24.7 5.4 41 11-59 210-252 (432)
235 3fvw_A Putative NAD(P)H-depend 69.7 9.7 0.00033 22.0 4.4 52 5-56 61-121 (192)
236 3k1y_A Oxidoreductase; structu 67.9 13 0.00043 21.7 4.6 48 6-54 80-127 (191)
237 2f62_A Nucleoside 2-deoxyribos 67.8 13 0.00043 21.2 4.4 43 7-55 63-108 (161)
238 3lcm_A SMU.1420, putative oxid 65.8 16 0.00055 21.2 4.8 50 7-56 69-130 (196)
239 3f2v_A General stress protein 63.9 17 0.00057 21.2 4.6 50 7-56 54-111 (192)
240 1rtt_A Conserved hypothetical 62.8 9.9 0.00034 21.8 3.5 50 7-56 68-119 (193)
241 3ha2_A NADPH-quinone reductase 62.7 18 0.00063 20.8 4.5 50 7-56 47-103 (177)
242 2q62_A ARSH; alpha/beta, flavo 61.6 16 0.00053 22.3 4.3 49 6-54 93-145 (247)
243 3q9l_A Septum site-determining 61.4 23 0.00079 21.0 5.4 52 5-57 129-185 (260)
244 3svl_A Protein YIEF; E. coli C 61.2 22 0.00074 20.6 5.1 50 6-55 67-118 (193)
245 1d4a_A DT-diaphorase, quinone 60.9 18 0.00062 22.2 4.5 48 9-56 91-150 (273)
246 3kjh_A CO dehydrogenase/acetyl 59.9 24 0.00081 20.7 5.2 47 6-56 148-194 (254)
247 3k9g_A PF-32 protein; ssgcid, 58.2 28 0.00094 20.9 6.3 49 5-56 160-208 (267)
248 3kl4_A SRP54, signal recogniti 57.8 21 0.00071 23.8 4.6 41 11-58 211-251 (433)
249 3szr_A Interferon-induced GTP- 55.5 10 0.00036 26.3 3.1 16 44-59 213-228 (608)
250 2khz_A C-MYC-responsive protei 54.3 24 0.00084 19.9 4.1 42 7-56 73-114 (165)
251 3r6w_A FMN-dependent NADH-azor 53.9 29 0.00098 20.2 4.5 48 8-55 84-147 (212)
252 1t0i_A YLR011WP; FMN binding p 53.2 27 0.00093 19.8 4.2 46 6-53 79-124 (191)
253 1t5b_A Acyl carrier protein ph 52.9 27 0.00091 19.9 4.2 50 7-56 82-143 (201)
254 1hyq_A MIND, cell division inh 52.4 35 0.0012 20.4 4.8 49 6-58 127-175 (263)
255 3bfv_A CAPA1, CAPB2, membrane 51.6 32 0.0011 21.0 4.6 46 8-58 211-257 (271)
256 3tem_A Ribosyldihydronicotinam 50.0 39 0.0013 20.2 5.1 50 8-57 89-150 (228)
257 2vzf_A NADH-dependent FMN redu 49.4 27 0.00092 20.1 3.8 46 7-53 65-110 (197)
258 2ph1_A Nucleotide-binding prot 49.2 41 0.0014 20.2 5.1 42 11-57 152-194 (262)
259 1eiw_A Hypothetical protein MT 47.9 15 0.00051 19.5 2.3 41 8-53 35-75 (111)
260 3gfs_A FMN-dependent NADPH-azo 47.5 14 0.00046 20.8 2.3 49 7-56 59-107 (174)
261 1j8m_F SRP54, signal recogniti 46.1 51 0.0017 20.6 4.9 42 9-58 210-252 (297)
262 1wcv_1 SOJ, segregation protei 44.4 49 0.0017 19.7 6.4 51 6-58 128-182 (257)
263 4fyk_A Deoxyribonucleoside 5'- 44.2 39 0.0013 19.1 3.8 38 8-53 65-102 (152)
264 2ark_A Flavodoxin; FMN, struct 44.1 43 0.0015 19.0 4.6 50 8-57 49-100 (188)
265 2hpv_A FMN-dependent NADH-azor 43.5 46 0.0016 19.1 5.1 48 8-55 91-150 (208)
266 2fzv_A Putative arsenical resi 43.2 36 0.0012 21.3 3.8 49 6-54 118-170 (279)
267 3l9w_A Glutathione-regulated p 42.6 59 0.002 21.4 5.0 50 7-56 288-345 (413)
268 3hyn_A Putative signal transdu 41.7 40 0.0014 19.9 3.6 48 5-56 73-120 (189)
269 2fz5_A Flavodoxin; alpha/beta 41.2 37 0.0013 17.8 3.4 45 9-55 44-90 (137)
270 1rli_A Trp repressor binding p 41.1 37 0.0013 18.9 3.5 48 7-54 67-124 (184)
271 3p0r_A Azoreductase; structura 40.2 55 0.0019 19.1 5.1 48 8-55 89-148 (211)
272 1sqs_A Conserved hypothetical 40.1 58 0.002 19.3 4.7 47 8-54 76-125 (242)
273 3la6_A Tyrosine-protein kinase 39.9 66 0.0022 19.9 6.0 47 8-58 221-267 (286)
274 2amj_A Modulator of drug activ 37.5 61 0.0021 18.8 4.8 31 7-37 66-96 (204)
275 1g3q_A MIND ATPase, cell divis 37.2 62 0.0021 18.8 8.0 62 6-71 128-190 (237)
276 2a5l_A Trp repressor binding p 36.2 51 0.0017 18.7 3.6 50 7-56 67-119 (200)
277 2oze_A ORF delta'; para, walke 33.9 81 0.0028 19.2 4.8 50 7-58 172-225 (298)
278 1obo_A Flavodoxin; electron tr 32.9 48 0.0017 18.3 3.1 46 8-54 43-89 (169)
279 1cp2_A CP2, nitrogenase iron p 29.8 91 0.0031 18.5 5.6 47 10-57 139-186 (269)
280 3d7n_A Flavodoxin, WRBA-like p 29.8 71 0.0024 18.2 3.5 49 7-55 50-101 (193)
281 1ni3_A YCHF GTPase, YCHF GTP-b 29.5 48 0.0016 21.8 2.9 20 4-23 108-127 (392)
282 3tnt_A SARS coronavirus main p 28.6 33 0.0011 21.6 1.9 24 85-108 253-276 (306)
283 4dez_A POL IV 1, DNA polymeras 28.3 1E+02 0.0036 19.6 4.3 33 14-53 3-35 (356)
284 1czn_A Flavodoxin; FMN binding 27.7 38 0.0013 18.7 2.0 46 8-54 43-89 (169)
285 3s2y_A Chromate reductase; ura 33.3 13 0.00045 21.7 0.0 48 7-54 69-118 (199)
286 1ydg_A Trp repressor binding p 27.2 63 0.0022 18.6 3.0 48 8-55 75-125 (211)
287 1xcr_A Hypothetical protein PT 27.1 26 0.00088 22.4 1.3 31 79-109 168-198 (316)
288 3u7i_A FMN-dependent NADH-azor 26.9 1E+02 0.0035 18.2 4.7 51 6-56 89-152 (223)
289 4f4y_A POL IV, DNA polymerase 26.0 1.1E+02 0.0037 19.8 4.1 33 15-54 2-34 (362)
290 1ag9_A Flavodoxin; electron tr 24.7 69 0.0023 17.9 2.7 45 8-53 42-87 (175)
291 5nul_A Flavodoxin; electron tr 24.7 85 0.0029 16.5 3.6 45 8-54 42-88 (138)
292 3pzx_A Formate--tetrahydrofola 24.6 1.8E+02 0.0063 20.3 6.2 58 44-106 373-430 (557)
293 3b6i_A Flavoprotein WRBA; flav 23.9 62 0.0021 18.2 2.5 50 7-56 64-116 (198)
294 3rl5_A Metallophosphoesterase 21.3 1.5E+02 0.005 18.7 3.9 46 9-57 77-122 (296)
295 3cio_A ETK, tyrosine-protein k 21.2 1.5E+02 0.0051 18.3 4.0 45 9-58 234-279 (299)
296 1uf3_A Hypothetical protein TT 21.0 1.3E+02 0.0043 17.1 3.8 43 11-57 32-75 (228)
297 1egw_A MADS box transcription 20.6 66 0.0022 15.8 1.8 16 8-23 36-51 (77)
No 1
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.89 E-value=6.5e-23 Score=122.15 Aligned_cols=105 Identities=22% Similarity=0.378 Sum_probs=84.9
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHH---HHHhcCCC-CCCCeEEEEeeCC-CCCCCCCHHHHHhhhCCCcc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL---HRMLNEDE-LRDAVLLVFANKQ-DLPNAMNAAEITDKLGLHSL 75 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~iiv~nK~-Dl~~~~~~~~~~~~~~~~~~ 75 (110)
+|++|++||+++|++|||+|+++.+..+ ...++ ..++.+.. +.+.|++|++||. |++++.+..++.+.+++...
T Consensus 115 lRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~L~~l 193 (227)
T 3l82_B 115 VIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLL 193 (227)
T ss_dssp --CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTTGGGG
T ss_pred HHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcCCcCC
Confidence 5899999999999999999999865433 44444 44454432 4689999999995 78888888899988888766
Q ss_pred cCcceEEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 76 RQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 76 ~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
.+.|.+..|||.+|+|+.+.++||.+.+.++
T Consensus 194 -~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k 224 (227)
T 3l82_B 194 -NHPWLVQDTEAETLTGFLNGIEWILEEVESK 224 (227)
T ss_dssp -CSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred -CCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence 5899999999999999999999999887654
No 2
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.87 E-value=3.8e-21 Score=110.95 Aligned_cols=107 Identities=88% Similarity=1.383 Sum_probs=85.3
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcce
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 80 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 80 (110)
++.+|..+++++|++++|+|++++.++.....++..+.......+.|+++|+||+|+.+....+++...++........+
T Consensus 57 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 136 (164)
T 1r8s_A 57 IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNW 136 (164)
T ss_dssp GHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCE
T ss_pred hHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccE
Confidence 35678899999999999999999988888888888877654446799999999999977655566665555433444567
Q ss_pred EEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 81 YIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 81 ~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
+++++||++|.|++++++++.+.+.++
T Consensus 137 ~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 163 (164)
T 1r8s_A 137 YIQATCATSGDGLYEGLDWLSNQLRNQ 163 (164)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHC---
T ss_pred EEEEcccCCCcCHHHHHHHHHHHHhhc
Confidence 899999999999999999999987654
No 3
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.87 E-value=2.6e-21 Score=113.78 Aligned_cols=107 Identities=49% Similarity=0.860 Sum_probs=84.9
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcce
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 80 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 80 (110)
|+++|..|++++|++++|+|++++.++.....|+..++......+.|+++|+||+|+.+....+++.+.++........+
T Consensus 73 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 152 (181)
T 1fzq_A 73 IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVW 152 (181)
T ss_dssp GHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCE
T ss_pred HHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCce
Confidence 35678999999999999999999888888888888776554446799999999999987666556655554433334567
Q ss_pred EEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 81 YIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 81 ~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
+++++||++|.|++++++++.+.+.++
T Consensus 153 ~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 179 (181)
T 1fzq_A 153 QIQSCSALTGEGVQDGMNWVCKNVNAK 179 (181)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHTC---
T ss_pred EEEEccCCCCCCHHHHHHHHHHHHHhc
Confidence 899999999999999999999887654
No 4
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.87 E-value=6.7e-21 Score=113.00 Aligned_cols=106 Identities=75% Similarity=1.288 Sum_probs=86.8
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcce
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 80 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 80 (110)
|+.+|..+++++|++++|+|++++.++.....++..++......+.|+++|+||+|+.+....+++...++........+
T Consensus 86 ~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~ 165 (192)
T 2b6h_A 86 IRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTW 165 (192)
T ss_dssp -CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCE
T ss_pred HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCce
Confidence 45788999999999999999999988888888888877654446799999999999977655566666655443445667
Q ss_pred EEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 81 YIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 81 ~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
+++++||++|.|++++++++.+.+.+
T Consensus 166 ~~~~~SA~~g~gi~~l~~~l~~~i~~ 191 (192)
T 2b6h_A 166 YVQATCATQGTGLYDGLDWLSHELSK 191 (192)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHTTT
T ss_pred EEEECcCCCcCCHHHHHHHHHHHHhc
Confidence 89999999999999999999988754
No 5
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.87 E-value=1.2e-20 Score=109.42 Aligned_cols=107 Identities=50% Similarity=0.898 Sum_probs=86.8
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcce
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 80 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 80 (110)
++.+|..+++++|++++|+|++++.++.....++..++......+.|+++|+||+|+.+....+++...++.......++
T Consensus 64 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 143 (171)
T 1upt_A 64 IRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKW 143 (171)
T ss_dssp GGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCE
T ss_pred hhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCce
Confidence 35688999999999999999999888888888888877654446799999999999977655556655554433445667
Q ss_pred EEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 81 YIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 81 ~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
+++++||++|.|++++++++.+.+.++
T Consensus 144 ~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 170 (171)
T 1upt_A 144 QIFKTSATKGTGLDEAMEWLVETLKSR 170 (171)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred EEEECcCCCCcCHHHHHHHHHHHHhhc
Confidence 899999999999999999999988653
No 6
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.86 E-value=1.6e-20 Score=110.47 Aligned_cols=106 Identities=48% Similarity=0.901 Sum_probs=86.7
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceE
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWY 81 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 81 (110)
+.+|..+++++|++++|+|++++.++.....++..++......+.|+++|+||+|+.+....+++.+.++........++
T Consensus 76 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 155 (186)
T 1ksh_A 76 RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWR 155 (186)
T ss_dssp HTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEE
T ss_pred HHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceE
Confidence 46788999999999999999999888888888888776544467999999999999876666666555544333345678
Q ss_pred EEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 82 IQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 82 ~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
++++||++|.|++++++++.+.+.++
T Consensus 156 ~~~~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 156 IQGCSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999988764
No 7
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.86 E-value=2.1e-20 Score=109.55 Aligned_cols=107 Identities=53% Similarity=0.932 Sum_probs=87.9
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcce
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 80 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 80 (110)
++.+|..+++++|++++|+|++++.++.....++..+.......+.|+++|+||+|+.+....+++...++........+
T Consensus 75 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~ 154 (183)
T 1moz_A 75 IRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSW 154 (183)
T ss_dssp CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCE
T ss_pred HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCce
Confidence 45688999999999999999998888888888888877654346799999999999977666666666665444445667
Q ss_pred EEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 81 YIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 81 ~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
+++++||++|.|++++++++.+.+.++
T Consensus 155 ~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 181 (183)
T 1moz_A 155 SIVASSAIKGEGITEGLDWLIDVIKEE 181 (183)
T ss_dssp EEEEEBGGGTBTHHHHHHHHHHHHHHH
T ss_pred EEEEccCCCCcCHHHHHHHHHHHHHhc
Confidence 899999999999999999999988654
No 8
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=2.4e-20 Score=109.95 Aligned_cols=106 Identities=45% Similarity=0.832 Sum_probs=85.7
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcce
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 80 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 80 (110)
++.+|..+++++|++++|+|++++.++.....|+..+.......+.|+++|+||+|+.+....+++...++.......++
T Consensus 73 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~ 152 (187)
T 1zj6_A 73 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQW 152 (187)
T ss_dssp -CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCE
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCc
Confidence 45788999999999999999999888888888888877653345799999999999987656666665554432344567
Q ss_pred EEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 81 YIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 81 ~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
+++++||++|.|++++++++.+.+..
T Consensus 153 ~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 153 HIQACCALTGEGLCQGLEWMMSRLKI 178 (187)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHHCC
T ss_pred EEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 89999999999999999999988753
No 9
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.86 E-value=2.1e-20 Score=110.28 Aligned_cols=107 Identities=50% Similarity=0.944 Sum_probs=87.1
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcce
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 80 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 80 (110)
++.+|..+++++|++++|+|++++.++.....++..++......+.|+++|+||+|+.+....+++...++........+
T Consensus 79 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 158 (189)
T 2x77_A 79 VRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTW 158 (189)
T ss_dssp SCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCE
T ss_pred HHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCce
Confidence 35678889999999999999999888888888888877654446899999999999977655566665554433445567
Q ss_pred EEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 81 YIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 81 ~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
+++++||++|.|++++++++.+.+.++
T Consensus 159 ~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 159 TIVKSSSKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred EEEEccCCCccCHHHHHHHHHHHHHhc
Confidence 899999999999999999999988654
No 10
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.85 E-value=3.4e-20 Score=110.47 Aligned_cols=104 Identities=26% Similarity=0.634 Sum_probs=83.0
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCc------
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS------ 74 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~------ 74 (110)
++.+|..|++++|++++|+|++++.++.....|+..++......+.|+++|+||+|+.+....+++.+.+....
T Consensus 82 ~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 161 (198)
T 1f6b_A 82 ARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKG 161 (198)
T ss_dssp -CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSS
T ss_pred hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCccccccccc
Confidence 46789999999999999999999888988888888887654446799999999999987666666666554221
Q ss_pred ---c---cCcceEEEeeecccCCCHHHHHHHHHHHH
Q 044598 75 ---L---RQRHWYIQSTCATSGEGLYEGLDWLSNNI 104 (110)
Q Consensus 75 ---~---~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 104 (110)
. ....++++++||++|+|++++++++.+.+
T Consensus 162 ~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 162 SVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp CCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred ccccccccCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 0 12457899999999999999999998654
No 11
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.85 E-value=1e-20 Score=112.24 Aligned_cols=108 Identities=33% Similarity=0.621 Sum_probs=86.5
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCC-------CCCeEEEEeeCCCCCCCCCHHHHHhhhCCC
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL-------RDAVLLVFANKQDLPNAMNAAEITDKLGLH 73 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~ 73 (110)
|+.+|..|++++|++|+|+|++++.++.....|+..++..... .+.|+++|+||+|+.+....+++...++..
T Consensus 76 ~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~ 155 (199)
T 4bas_A 76 FRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLT 155 (199)
T ss_dssp GGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHH
T ss_pred HHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcch
Confidence 4678899999999999999999998898888888887654221 278999999999998776656665555432
Q ss_pred cc-cCcceEEEeeecccCCCHHHHHHHHHHHHHhhc
Q 044598 74 SL-RQRHWYIQSTCATSGEGLYEGLDWLSNNIANKV 108 (110)
Q Consensus 74 ~~-~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 108 (110)
.. ....++++++||++|.|+++++++|.+.+..+.
T Consensus 156 ~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 156 TLMGDHPFVIFASNGLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp HHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred hhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence 22 345678999999999999999999999887653
No 12
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.85 E-value=2.8e-20 Score=109.21 Aligned_cols=103 Identities=47% Similarity=0.857 Sum_probs=83.4
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcce
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 80 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 80 (110)
++.+|..+++++|++++|+|++++.++.....++..+.......+.|+++|+||+|+.+....+++...++........+
T Consensus 78 ~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~ 157 (181)
T 2h17_A 78 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQW 157 (181)
T ss_dssp GTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCE
T ss_pred HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCce
Confidence 35678899999999999999999888888888888877653346799999999999977666666666554433345567
Q ss_pred EEEeeecccCCCHHHHHHHHHHH
Q 044598 81 YIQSTCATSGEGLYEGLDWLSNN 103 (110)
Q Consensus 81 ~~~~~Sa~~~~~i~~l~~~l~~~ 103 (110)
+++++||++|.|+++++++|.+.
T Consensus 158 ~~~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 158 HIQACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp EEEECBTTTTBTHHHHHHHHHTC
T ss_pred EEEEccCCCCcCHHHHHHHHHhh
Confidence 89999999999999999999764
No 13
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.85 E-value=2.9e-20 Score=109.76 Aligned_cols=106 Identities=25% Similarity=0.615 Sum_probs=84.1
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceE
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWY 81 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 81 (110)
+.+|..+++++|++++|+|++++.++.....++..++......+.|+++|+||+|+.+....+++...++........++
T Consensus 81 ~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 160 (188)
T 1zd9_A 81 RSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREIC 160 (188)
T ss_dssp HTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEE
T ss_pred HHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCee
Confidence 56788999999999999999998888888888888776533467999999999999776555555555443333345678
Q ss_pred EEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 82 IQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 82 ~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
++++||++|.|++++++++.+.+..+
T Consensus 161 ~~~~SA~~g~gv~~l~~~l~~~~~~~ 186 (188)
T 1zd9_A 161 CYSISCKEKDNIDITLQWLIQHSKSR 186 (188)
T ss_dssp EEECCTTTCTTHHHHHHHHHHTCC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999877543
No 14
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.85 E-value=7.3e-20 Score=108.09 Aligned_cols=106 Identities=42% Similarity=0.798 Sum_probs=84.7
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCC--CCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL--RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 78 (110)
++.+|..+++++|++++|+|++++.++.....++..+...... .+.|+++|+||+|+.+....+++...+........
T Consensus 80 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 159 (190)
T 2h57_A 80 YRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDK 159 (190)
T ss_dssp TGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSS
T ss_pred HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCC
Confidence 4678899999999999999999988888888888887765443 57899999999999876666666655543333345
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
.++++++||++|.|++++++++.+.+.+
T Consensus 160 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 160 PWHICASDAIKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp CEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred ceEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 6789999999999999999999988753
No 15
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.85 E-value=4e-20 Score=109.45 Aligned_cols=103 Identities=37% Similarity=0.640 Sum_probs=82.6
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCc------
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS------ 74 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~------ 74 (110)
++.+|..|++++|++++|+|++++.++.....|+..++......+.|+++|+||+|+.+....+++.+.++...
T Consensus 80 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 159 (190)
T 1m2o_B 80 ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQR 159 (190)
T ss_dssp GTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---
T ss_pred HHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCcccccccc
Confidence 35678899999999999999999988988888888877654446799999999999987666666666554321
Q ss_pred -ccCcceEEEeeecccCCCHHHHHHHHHHH
Q 044598 75 -LRQRHWYIQSTCATSGEGLYEGLDWLSNN 103 (110)
Q Consensus 75 -~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 103 (110)
.....++++++||++|+|++++++++.+.
T Consensus 160 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 160 IEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp CCSSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred ccccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 11345789999999999999999999764
No 16
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.84 E-value=2.4e-21 Score=120.27 Aligned_cols=105 Identities=23% Similarity=0.389 Sum_probs=85.0
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHH---HHhcCCC-CCCCeEEEEeeC-CCCCCCCCHHHHHhhhCCCcc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELH---RMLNEDE-LRDAVLLVFANK-QDLPNAMNAAEITDKLGLHSL 75 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~iiv~nK-~Dl~~~~~~~~~~~~~~~~~~ 75 (110)
+|++|++||+++|++|||+|+++.+..+ ...++. .++.+.. +.+.|++|++|| .|++++.+..++.+.+++...
T Consensus 200 lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~L~~l 278 (312)
T 3l2o_B 200 VIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLL 278 (312)
T ss_dssp CCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTTGGGG
T ss_pred HHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcCCccC
Confidence 5899999999999999999999876543 333332 4444322 368999999996 699888888899998888766
Q ss_pred cCcceEEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 76 RQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 76 ~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
.+.|.+..|||.+|+|+.+.++||.+.+.++
T Consensus 279 -~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 279 -NHPWLVQDTEAETLTGFLNGIEWILEEVESK 309 (312)
T ss_dssp -CSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred -CCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence 5799999999999999999999999988654
No 17
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.83 E-value=2.5e-20 Score=112.59 Aligned_cols=100 Identities=16% Similarity=0.278 Sum_probs=78.4
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC--CCHHHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~ 78 (110)
|+.+++.|+++++++++|+|.+++.++.....|+..+..... .+.|+++|+||+|+.+. ...++..... ...
T Consensus 75 ~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~-~~~piilVgNK~Dl~~~r~V~~~e~~~~a-----~~~ 148 (216)
T 4dkx_A 75 FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDLADKRQVSIEEGERKA-----KEL 148 (216)
T ss_dssp CGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSSEEEEEEECTTCGGGCCSCHHHHHHHH-----HHH
T ss_pred hhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcC-CCCeEEEEeeccchHhcCcccHHHHhhHH-----HHh
Confidence 578899999999999999999999999999888887754432 57999999999999653 2334332221 123
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
++++++|||++|.||+++|+.|++.+..
T Consensus 149 ~~~~~e~SAktg~nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 149 NVMFIETSAKAGYNVKQLFRRVAAALPG 176 (216)
T ss_dssp TCEEEEEBTTTTBSHHHHHHHHHHHC--
T ss_pred CCeeEEEeCCCCcCHHHHHHHHHHHHHh
Confidence 4578999999999999999999988753
No 18
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.83 E-value=2.2e-19 Score=119.54 Aligned_cols=107 Identities=65% Similarity=1.221 Sum_probs=89.5
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcce
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 80 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 80 (110)
|+.+|..|++++|++|+|+|++++.++.....++..++......++|+++|+||+|+.+....+++...++........+
T Consensus 379 ~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 458 (497)
T 3lvq_E 379 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNW 458 (497)
T ss_dssp GSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCE
T ss_pred HHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCe
Confidence 46788999999999999999999988988888888887665556899999999999987766667766666554455678
Q ss_pred EEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 81 YIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 81 ~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
+++++||++|+|+++++++|.+.+.++
T Consensus 459 ~~~~~SA~~g~gi~~l~~~l~~~~~~~ 485 (497)
T 3lvq_E 459 YVQPSCATSGDGLYEGLTWLTSNYKSK 485 (497)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHCC--
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 899999999999999999999987654
No 19
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.83 E-value=1.9e-19 Score=114.65 Aligned_cols=107 Identities=88% Similarity=1.383 Sum_probs=89.4
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcce
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 80 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 80 (110)
|+.++..+++++|++|+|+|++++.++.....++..++......++|+++|+||+|+.+....+++...++........+
T Consensus 222 ~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~ 301 (329)
T 3o47_A 222 IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNW 301 (329)
T ss_dssp -CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCE
T ss_pred HHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCC
Confidence 46788999999999999999999888988888888877665556899999999999987766667777666555556678
Q ss_pred EEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 81 YIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 81 ~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
+++++||++|.|+++++++|.+.+.++
T Consensus 302 ~~~~vSAk~g~gi~el~~~l~~~l~~~ 328 (329)
T 3o47_A 302 YIQATCATSGDGLYEGLDWLSNQLRNQ 328 (329)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHHTC-
T ss_pred EEEEEECCCCcCHHHHHHHHHHHHHhc
Confidence 999999999999999999999988654
No 20
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.80 E-value=1.1e-18 Score=103.10 Aligned_cols=101 Identities=23% Similarity=0.370 Sum_probs=78.0
Q ss_pred CcchHHHhcccCCEEEEEEECCC------hhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSND------RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS 74 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~------~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~ 74 (110)
|+.+|..+++++|++|+|+|+++ ..++.....|+..+. ....+.|+++|+||+|+.+....+++.....
T Consensus 87 ~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~--~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~--- 161 (198)
T 3t1o_A 87 YNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG--LTLDDVPIVIQVNKRDLPDALPVEMVRAVVD--- 161 (198)
T ss_dssp CSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT--CCTTSSCEEEEEECTTSTTCCCHHHHHHHHC---
T ss_pred HHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc--cccCCCCEEEEEEchhcccccCHHHHHHHHH---
Confidence 46789999999999999999984 344555555665542 2235799999999999987766666655542
Q ss_pred ccCcce-EEEeeecccCCCHHHHHHHHHHHHHhhc
Q 044598 75 LRQRHW-YIQSTCATSGEGLYEGLDWLSNNIANKV 108 (110)
Q Consensus 75 ~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 108 (110)
..+. +++++||++|.|++++++++.+.+.++.
T Consensus 162 --~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~ 194 (198)
T 3t1o_A 162 --PEGKFPVLEAVATEGKGVFETLKEVSRLVLARV 194 (198)
T ss_dssp --TTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred --hcCCceEEEEecCCCcCHHHHHHHHHHHHHHHh
Confidence 2344 7899999999999999999999887654
No 21
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.80 E-value=1.6e-18 Score=100.09 Aligned_cols=102 Identities=15% Similarity=0.086 Sum_probs=69.0
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~ 78 (110)
++.++..+++.+|++++|+|.+++.++.....|+..+.......+.|+++|+||+|+.+.. ..++..... ...
T Consensus 62 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~ 136 (166)
T 3q72_A 62 GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACA-----VVF 136 (166)
T ss_dssp -----------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHH-----HHT
T ss_pred chhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHH-----HHh
Confidence 3567889999999999999999998888888888877655444679999999999996543 222222211 123
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
+.+++++||++|.|++++++++.+.+..+
T Consensus 137 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 165 (166)
T 3q72_A 137 DCKFIETSAALHHNVQALFEGVVRQIRLR 165 (166)
T ss_dssp TCEEEECBGGGTBSHHHHHHHHHHHHHHH
T ss_pred CCcEEEeccCCCCCHHHHHHHHHHHHHhc
Confidence 45889999999999999999999988654
No 22
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.78 E-value=3e-18 Score=102.18 Aligned_cols=102 Identities=17% Similarity=0.236 Sum_probs=78.1
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC--CCHHHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~ 78 (110)
|+.+|..|++++|++|+|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+. ...++..... ...
T Consensus 91 ~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~-----~~~ 164 (201)
T 2hup_A 91 FRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLA-----EHY 164 (201)
T ss_dssp GHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHT
T ss_pred HHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHH-----HHc
Confidence 35678999999999999999999888887777777665432 257999999999999642 2333333321 122
Q ss_pred ce-EEEeeecccCCCHHHHHHHHHHHHHhhc
Q 044598 79 HW-YIQSTCATSGEGLYEGLDWLSNNIANKV 108 (110)
Q Consensus 79 ~~-~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 108 (110)
++ +++++||++|.|++++++++.+.+..+.
T Consensus 165 ~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~ 195 (201)
T 2hup_A 165 DILCAIETSAKDSSNVEEAFLRVATELIMRH 195 (201)
T ss_dssp TCSEEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 34 7899999999999999999999887654
No 23
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.77 E-value=4.1e-18 Score=99.86 Aligned_cols=101 Identities=15% Similarity=0.201 Sum_probs=69.8
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~ 78 (110)
|+.+|..+++++|++++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+.. ..++..... ...
T Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~ 143 (183)
T 2fu5_C 70 FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHA-SADVEKMILGNKCDVNDKRQVSKERGEKLA-----LDY 143 (183)
T ss_dssp ----CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEEC--CCSCCCSCHHHHHHHH-----HHH
T ss_pred hhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECccCCccCcCCHHHHHHHH-----HHc
Confidence 35677889999999999999999888888777777665432 2478999999999996532 333333221 122
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
+++++++||++|.|+++++.++.+.+..+
T Consensus 144 ~~~~~~~Sa~~~~~i~~l~~~l~~~i~~~ 172 (183)
T 2fu5_C 144 GIKFMETSAKANINVENAFFTLARDIKAK 172 (183)
T ss_dssp TCEEEECCC---CCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 45789999999999999999999888654
No 24
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.77 E-value=3e-18 Score=100.45 Aligned_cols=102 Identities=14% Similarity=0.162 Sum_probs=77.3
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC--CCHHHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~ 78 (110)
++.++..+++++|++++|+|++++.++.....|+..+.......+.|+++|+||+|+.+. ...++..... ...
T Consensus 79 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~-----~~~ 153 (183)
T 3kkq_A 79 FSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMA-----TKY 153 (183)
T ss_dssp GCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHH-----HHH
T ss_pred hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHH-----HHh
Confidence 356788999999999999999998888887777776654333357899999999998653 2333332221 112
Q ss_pred ceEEEeeecc-cCCCHHHHHHHHHHHHHhh
Q 044598 79 HWYIQSTCAT-SGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 79 ~~~~~~~Sa~-~~~~i~~l~~~l~~~~~~~ 107 (110)
+.+++++||+ +|.|++++|+++.+.+.++
T Consensus 154 ~~~~~~~Sa~~~~~~v~~l~~~l~~~i~~q 183 (183)
T 3kkq_A 154 NIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183 (183)
T ss_dssp TCCEEEEBCSSSCBSHHHHHHHHHHHHHHC
T ss_pred CCeEEEeccCCCCCCHHHHHHHHHHHHhhC
Confidence 3568899999 9999999999999987653
No 25
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.77 E-value=3.5e-18 Score=98.49 Aligned_cols=101 Identities=18% Similarity=0.250 Sum_probs=77.4
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC--CCHHHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~ 78 (110)
++.++..+++++|++++|+|++++.++.....|+..+.......+.|+++|+||+|+.+. ...++..... ...
T Consensus 65 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~ 139 (168)
T 1u8z_A 65 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-----DQW 139 (168)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHH-----HHH
T ss_pred hHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHH-----HHc
Confidence 356788999999999999999998888887777776655433347999999999998543 2333333221 123
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
+++++++||++|.|++++++++.+.+.+
T Consensus 140 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 167 (168)
T 1u8z_A 140 NVNYVETSAKTRANVDKVFFDLMREIRA 167 (168)
T ss_dssp TCEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence 4578999999999999999999998764
No 26
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.76 E-value=1.2e-17 Score=96.96 Aligned_cols=101 Identities=14% Similarity=0.078 Sum_probs=74.1
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCcc
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRH 79 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~ 79 (110)
+.++..+++.+|++++|+|.+++.++.....|+..+.......+.|+++|+||+|+.+.. ..++..... ...+
T Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~-----~~~~ 142 (175)
T 2nzj_A 68 SWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACA-----VVFD 142 (175)
T ss_dssp CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHH-----HHHT
T ss_pred hhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHH-----HHcC
Confidence 346678899999999999999998888877777766544333579999999999996542 233322211 1123
Q ss_pred eEEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 80 WYIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 80 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
++++++||++|.|++++++++.+.+..+
T Consensus 143 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 170 (175)
T 2nzj_A 143 CKFIETSATLQHNVAELFEGVVRQLRLR 170 (175)
T ss_dssp SEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 5789999999999999999999988654
No 27
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.76 E-value=5.8e-18 Score=97.95 Aligned_cols=99 Identities=18% Similarity=0.175 Sum_probs=75.5
Q ss_pred hHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC--CCHHHHHhhhCCCcccCcceE
Q 044598 4 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWY 81 (110)
Q Consensus 4 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~ 81 (110)
++..+++++|++++|+|++++.++.....|+..+.......+.|+++|+||+|+.+. ...++..... ...+.+
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~ 142 (169)
T 3q85_A 68 LQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLA-----GTLSCK 142 (169)
T ss_dssp --CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCE
T ss_pred hhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHH-----HHcCCc
Confidence 677789999999999999999888888888887765544357999999999998632 2333332221 123458
Q ss_pred EEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 82 IQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 82 ~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
++++||++|.|++++++++.+.+..+
T Consensus 143 ~~~~Sa~~~~~v~~l~~~l~~~i~~~ 168 (169)
T 3q85_A 143 HIETSAALHHNTRELFEGAVRQIRLR 168 (169)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred EEEecCccCCCHHHHHHHHHHHHHhc
Confidence 89999999999999999999988654
No 28
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=1.2e-17 Score=98.59 Aligned_cols=102 Identities=24% Similarity=0.292 Sum_probs=78.0
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC-CHHHHHhhhCCCcccCcc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRH 79 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 79 (110)
|+.++..+++++|++|+|+|++++.++.....|+..+.......+.|+++|+||+|+.... ..++..... ...+
T Consensus 77 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~ 151 (195)
T 1x3s_A 77 FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFA-----RKHS 151 (195)
T ss_dssp GCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHH-----HHTT
T ss_pred hhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHH-----HHcC
Confidence 3567889999999999999999988888777777777554333579999999999995432 233332221 1234
Q ss_pred eEEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 80 WYIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 80 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
++++++||+++.|++++++++.+.+...
T Consensus 152 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 179 (195)
T 1x3s_A 152 MLFIEASAKTCDGVQCAFEELVEKIIQT 179 (195)
T ss_dssp CEEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHhh
Confidence 5789999999999999999999988654
No 29
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=7.1e-18 Score=99.67 Aligned_cols=102 Identities=15% Similarity=0.231 Sum_probs=77.5
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~ 78 (110)
|+.++..+++++|++++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+.. ..++..... ...
T Consensus 85 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~ 158 (191)
T 3dz8_A 85 YRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYS-WDNAQVILVGNKCDMEEERVVPTEKGQLLA-----EQL 158 (191)
T ss_dssp CHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHH
T ss_pred HHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHH-----HHc
Confidence 45678999999999999999999888887777776664432 2579999999999985432 223222211 122
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHHhhc
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIANKV 108 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 108 (110)
+++++++||++|.|++++++++.+.+..+.
T Consensus 159 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 188 (191)
T 3dz8_A 159 GFDFFEASAKENISVRQAFERLVDAICDKM 188 (191)
T ss_dssp TCEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 457899999999999999999999987664
No 30
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.76 E-value=8.1e-18 Score=99.42 Aligned_cols=102 Identities=20% Similarity=0.275 Sum_probs=77.3
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC--CCHHHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~ 78 (110)
|+.++..+++++|++|+|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+. ...++..... ...
T Consensus 83 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~ 156 (191)
T 2a5j_A 83 FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHS-SSNMVIMLIGNKSDLESRRDVKREEGEAFA-----REH 156 (191)
T ss_dssp TSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHH
T ss_pred hhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCCccccCHHHHHHHH-----HHc
Confidence 45678899999999999999999888887777777665432 257999999999998542 2333332221 123
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHHhhc
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIANKV 108 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 108 (110)
+++++++||++|.|++++++++.+.+.++.
T Consensus 157 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 186 (191)
T 2a5j_A 157 GLIFMETSAKTACNVEEAFINTAKEIYRKI 186 (191)
T ss_dssp TCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 457899999999999999999998887653
No 31
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.76 E-value=1.3e-17 Score=98.64 Aligned_cols=102 Identities=16% Similarity=0.238 Sum_probs=77.3
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~ 78 (110)
++.++..+++++|++++|+|++++.++.....|+..+..... .+.|+++|+||+|+.+.. ..++..... ...
T Consensus 78 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~ 151 (196)
T 3tkl_A 78 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGNKCDLTTKKVVDYTTAKEFA-----DSL 151 (196)
T ss_dssp GCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCTTTCCSCHHHHHHHH-----HHT
T ss_pred hhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECcccccccccCHHHHHHHH-----HHc
Confidence 356789999999999999999998888877777766544322 478999999999986543 222222211 112
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHHhhc
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIANKV 108 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 108 (110)
+.+++++||++|.|++++|+++.+.+.++.
T Consensus 152 ~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~ 181 (196)
T 3tkl_A 152 GIPFLETSAKNATNVEQSFMTMAAEIKKRM 181 (196)
T ss_dssp TCCEEEECTTTCTTHHHHHHHHHHHHHHHC
T ss_pred CCcEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 347889999999999999999999987664
No 32
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.76 E-value=8.2e-18 Score=98.79 Aligned_cols=102 Identities=17% Similarity=0.270 Sum_probs=77.4
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC-CHHHHHhhhCCCcccCcc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRH 79 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 79 (110)
++.++..|++++|++++|+|++++.++.....|+..+.......+.|+++|+||+|+.+.. ..+...... ...+
T Consensus 65 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~-----~~~~ 139 (189)
T 4dsu_A 65 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLA-----RSYG 139 (189)
T ss_dssp -CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHH-----HHHT
T ss_pred HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHH-----HHcC
Confidence 4568899999999999999999988888877777776654344579999999999996543 223322221 1123
Q ss_pred eEEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 80 WYIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 80 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
++++++||++|.|++++++++.+.+...
T Consensus 140 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 167 (189)
T 4dsu_A 140 IPFIETSAKTRQGVDDAFYTLVREIRKH 167 (189)
T ss_dssp CCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 4688999999999999999999988643
No 33
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.76 E-value=1.4e-17 Score=98.99 Aligned_cols=99 Identities=18% Similarity=0.167 Sum_probs=76.2
Q ss_pred hHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCcceE
Q 044598 4 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWY 81 (110)
Q Consensus 4 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~ 81 (110)
++..|++++|++|+|+|.+++.++.....|+..+.......+.|+++|+||+|+.+.. ..++..... ...+.+
T Consensus 89 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a-----~~~~~~ 163 (195)
T 3cbq_A 89 LRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLA-----GTLSCK 163 (195)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCE
T ss_pred hHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHH-----HHhCCE
Confidence 6788899999999999999998888888888776544332479999999999996532 333332221 112357
Q ss_pred EEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 82 IQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 82 ~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
++++||++|.|++++|+++.+.+..+
T Consensus 164 ~~e~Sa~~~~~v~~lf~~l~~~i~~~ 189 (195)
T 3cbq_A 164 HIETSAALHHNTRELFEGAVRQIRLR 189 (195)
T ss_dssp EEEEBTTTTBSHHHHHHHHHHHHHTT
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHHh
Confidence 89999999999999999999988654
No 34
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.75 E-value=6.2e-18 Score=98.92 Aligned_cols=103 Identities=11% Similarity=0.030 Sum_probs=76.7
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~ 78 (110)
|+.++..+++++|++++|+|.+++.++.....|+..+.......+.|+++|+||+|+.+.. ..++..... ...
T Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~ 141 (181)
T 3t5g_A 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALA-----ESW 141 (181)
T ss_dssp TCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHH-----HHT
T ss_pred hhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHH-----HHh
Confidence 3567889999999999999999998888888777776554333578999999999985433 333332221 123
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHHhhc
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIANKV 108 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 108 (110)
+.+++++||++|.|++++++++.+.+....
T Consensus 142 ~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 171 (181)
T 3t5g_A 142 NAAFLESSAKENQTAVDVFRRIILEAEKMD 171 (181)
T ss_dssp TCEEEECCTTSHHHHHHHHHHHHHHHHTC-
T ss_pred CCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 457899999999999999999999887543
No 35
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.75 E-value=9e-18 Score=98.40 Aligned_cols=102 Identities=18% Similarity=0.259 Sum_probs=78.1
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC--CCHHHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~ 78 (110)
++.++..+++.+|++++|+|++++.++.....|+..+.......+.|+++|+||+|+.+. ...++..... ...
T Consensus 79 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~ 153 (187)
T 2a9k_A 79 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-----EQW 153 (187)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHT
T ss_pred cHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHH-----HHc
Confidence 356789999999999999999998888887777777655433347999999999998543 2333333322 123
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
+++++++||+++.|++++++++.+.+..+
T Consensus 154 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 182 (187)
T 2a9k_A 154 NVNYVETSAKTRANVDKVFFDLMREIRAR 182 (187)
T ss_dssp TCEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHh
Confidence 45789999999999999999999988653
No 36
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.75 E-value=1.3e-17 Score=100.33 Aligned_cols=100 Identities=16% Similarity=0.143 Sum_probs=73.8
Q ss_pred chHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC--CCHHHHHhhhCCCcccCcce
Q 044598 3 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHW 80 (110)
Q Consensus 3 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~ 80 (110)
.+++.|++.++++|+|+|.+++.++.....|+..+.......+.|+++|+||+|+.+. ...++.... ....++
T Consensus 103 ~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~-----a~~~~~ 177 (211)
T 2g3y_A 103 WLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRAC-----AVVFDC 177 (211)
T ss_dssp HHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHH-----HHHHTC
T ss_pred hHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHH-----HHHcCC
Confidence 3567788999999999999999899888777766654322347999999999998642 222221111 011235
Q ss_pred EEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 81 YIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 81 ~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
+++++||++|+|++++|+++.+.+..+
T Consensus 178 ~~~e~SAk~g~~v~elf~~l~~~i~~~ 204 (211)
T 2g3y_A 178 KFIETSAAVQHNVKELFEGIVRQVRLR 204 (211)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 789999999999999999999987543
No 37
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.75 E-value=1.1e-17 Score=98.60 Aligned_cols=101 Identities=16% Similarity=0.305 Sum_probs=76.6
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC--CCHHHHHhhhCCCcccCcc
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRH 79 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~ 79 (110)
+.++..+++++|++|+|+|++++.++.....|+..+.......+.|+++|+||+|+.+. ...++..... ...+
T Consensus 84 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~ 158 (195)
T 3bc1_A 84 RSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELA-----EKYG 158 (195)
T ss_dssp HHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHHT
T ss_pred HHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHH-----HHcC
Confidence 45788899999999999999998888877777776655433357899999999998642 2333332221 1123
Q ss_pred eEEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 80 WYIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 80 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
++++++||++|.|+++++++|.+.+.++
T Consensus 159 ~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 186 (195)
T 3bc1_A 159 IPYFETSAANGTNISHAIEMLLDLIMKR 186 (195)
T ss_dssp CCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4688999999999999999999988654
No 38
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.75 E-value=6.1e-19 Score=101.93 Aligned_cols=100 Identities=18% Similarity=0.263 Sum_probs=75.2
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC-----CCHHHHHhhhCCCcc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSL 75 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~-----~~~~~~~~~~~~~~~ 75 (110)
++.++..+++++|++++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+. ...++.....
T Consensus 65 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~----- 138 (170)
T 1ek0_A 65 FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEKLA----- 138 (170)
T ss_dssp GGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHH-----
T ss_pred hhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHHHH-----
Confidence 35678899999999999999999888888777777665442 257999999999998543 1222222211
Q ss_pred cCcceEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 76 RQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 76 ~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
...+++++++||++|.|++++++++.+.+.+
T Consensus 139 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 169 (170)
T 1ek0_A 139 EEKGLLFFETSAKTGENVNDVFLGIGEKIPL 169 (170)
T ss_dssp HHHTCEEEECCTTTCTTHHHHHHHHHTTSCC
T ss_pred HHcCCEEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 1234588999999999999999999887643
No 39
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.75 E-value=1.9e-17 Score=98.52 Aligned_cols=101 Identities=18% Similarity=0.252 Sum_probs=77.7
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC--CCHHHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~ 78 (110)
++.++..+++++|++++|+|++++.++.....|+..+.......+.|+++|+||+|+.+. ...++..... ...
T Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~ 149 (206)
T 2bov_A 75 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-----EQW 149 (206)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHH
T ss_pred hHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHH-----HHh
Confidence 356788999999999999999998888888777777665433357999999999998653 2333333221 122
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
+.+++++||++|.|+++++.++.+.+..
T Consensus 150 ~~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 150 NVNYVETSAKTRANVDKVFFDLMREIRA 177 (206)
T ss_dssp TCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 4578999999999999999999988764
No 40
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.75 E-value=1.2e-17 Score=97.39 Aligned_cols=102 Identities=18% Similarity=0.235 Sum_probs=77.9
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~ 78 (110)
++.++..+++++|++++|+|++++.++.....|+..++......+.|+++|+||+|+.+.. ..++..... ...
T Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~ 144 (181)
T 2fn4_A 70 FGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFG-----ASH 144 (181)
T ss_dssp TSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHT
T ss_pred hHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHH-----HHc
Confidence 3567889999999999999999988888887777776544333578999999999986432 233322221 123
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
+.+++++||++|.|++++++++.+.+.+.
T Consensus 145 ~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 173 (181)
T 2fn4_A 145 HVAYFEASAKLRLNVDEAFEQLVRAVRKY 173 (181)
T ss_dssp TCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CCeEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 45889999999999999999999988654
No 41
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.75 E-value=2.4e-17 Score=96.23 Aligned_cols=100 Identities=16% Similarity=0.239 Sum_probs=76.4
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~ 78 (110)
++.++..+++++|++++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+.. ..++..... ...
T Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~-----~~~ 147 (181)
T 2efe_B 74 YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQG-NPNMVMALAGNKSDLLDARKVTAEDAQTYA-----QEN 147 (181)
T ss_dssp GGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHH-----HHT
T ss_pred hhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccccCCHHHHHHHH-----HHc
Confidence 35678899999999999999999888888777777765442 2579999999999996432 333333321 123
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
+++++++||++|.|++++++++.+.+..
T Consensus 148 ~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 148 GLFFMETSAKTATNVKEIFYEIARRLPR 175 (181)
T ss_dssp TCEEEECCSSSCTTHHHHHHHHHHTCC-
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4578999999999999999999987754
No 42
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.75 E-value=3.2e-17 Score=97.78 Aligned_cols=101 Identities=16% Similarity=0.214 Sum_probs=76.7
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~ 78 (110)
|+.+|..+++++|++|+|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+.. ..++..... ...
T Consensus 70 ~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~ 143 (206)
T 2bcg_Y 70 FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKEFA-----DAN 143 (206)
T ss_dssp TTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHH-----HHT
T ss_pred HHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHH-----HHc
Confidence 45678899999999999999999888888777776664432 2478999999999996532 233332221 122
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
+++++++||++|.|+++++.++.+.+...
T Consensus 144 ~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 172 (206)
T 2bcg_Y 144 KMPFLETSALDSTNVEDAFLTMARQIKES 172 (206)
T ss_dssp TCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 35788999999999999999999988654
No 43
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.75 E-value=9.9e-18 Score=100.72 Aligned_cols=101 Identities=17% Similarity=0.325 Sum_probs=76.0
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCcc
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRH 79 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~ 79 (110)
+.+|..+++++|++|+|+|++++.++.....|+..+.......+.|+++|+||+|+.+.. ..++..... ...+
T Consensus 98 ~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~-----~~~~ 172 (217)
T 2f7s_A 98 RSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELA-----DKYG 172 (217)
T ss_dssp HHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTT
T ss_pred HhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHH-----HHCC
Confidence 457889999999999999999988888777777665443322579999999999986432 233332221 1123
Q ss_pred eEEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 80 WYIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 80 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
++++++||+++.|++++++++.+.+.++
T Consensus 173 ~~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 200 (217)
T 2f7s_A 173 IPYFETSAATGQNVEKAVETLLDLIMKR 200 (217)
T ss_dssp CCEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4788999999999999999999988654
No 44
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.74 E-value=1.1e-17 Score=96.73 Aligned_cols=102 Identities=19% Similarity=0.273 Sum_probs=76.1
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC-CHHHHHhhhCCCcccCcc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRH 79 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 79 (110)
++.++..+++++|++++|+|++++.++.....|+..+..... .+.|+++|+||+|+.+.. ..++..... ...+
T Consensus 65 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~ 138 (170)
T 1g16_A 65 FRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAN-DEAQLLLVGNKSDMETRVVTADQGEALA-----KELG 138 (170)
T ss_dssp TSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCTTCCSCHHHHHHHH-----HHHT
T ss_pred hhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECccCCcCccCHHHHHHHH-----HHcC
Confidence 356788899999999999999998888777777766654322 478999999999995432 223322221 1123
Q ss_pred eEEEeeecccCCCHHHHHHHHHHHHHhhc
Q 044598 80 WYIQSTCATSGEGLYEGLDWLSNNIANKV 108 (110)
Q Consensus 80 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 108 (110)
++++++||++|.|++++++++.+.+.++.
T Consensus 139 ~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~ 167 (170)
T 1g16_A 139 IPFIESSAKNDDNVNEIFFTLAKLIQEKI 167 (170)
T ss_dssp CCEEECBTTTTBSHHHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 47889999999999999999999887654
No 45
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.74 E-value=1.2e-17 Score=96.26 Aligned_cols=101 Identities=17% Similarity=0.189 Sum_probs=75.5
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~ 78 (110)
++.++..+++++|++++|+|++++.++.....|+..+.......+.|+++|+||+|+.+.. ..++...... ...
T Consensus 64 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~ 139 (167)
T 1c1y_A 64 FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR----QWC 139 (167)
T ss_dssp STTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH----HTT
T ss_pred HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHH----Hcc
Confidence 3568899999999999999999988887777777666543223579999999999986432 2333322211 012
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHH
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
..+++++||++|.|++++++++.+.+.
T Consensus 140 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 166 (167)
T 1c1y_A 140 NCAFLESSAKSKINVNEIFYDLVRQIN 166 (167)
T ss_dssp SCEEEECBTTTTBSHHHHHHHHHHHHT
T ss_pred CCcEEEecCCCCCCHHHHHHHHHHHHh
Confidence 458899999999999999999998764
No 46
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.74 E-value=3.2e-17 Score=96.88 Aligned_cols=102 Identities=18% Similarity=0.224 Sum_probs=77.8
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~ 78 (110)
++.++..+++++|++|+|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+.. ..++..... ...
T Consensus 87 ~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~ 160 (193)
T 2oil_A 87 YRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHA-EATIVVMLVGNKSDLSQAREVPTEEARMFA-----ENN 160 (193)
T ss_dssp TCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHT
T ss_pred hhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECCCcccccccCHHHHHHHH-----HHc
Confidence 45688999999999999999999888877777777765432 2579999999999986432 233332221 123
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHHhhc
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIANKV 108 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 108 (110)
+++++++||++|.|++++++++.+.+.++.
T Consensus 161 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 190 (193)
T 2oil_A 161 GLLFLETSALDSTNVELAFETVLKEIFAKV 190 (193)
T ss_dssp TCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 458899999999999999999999887653
No 47
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.74 E-value=2.4e-17 Score=97.16 Aligned_cols=102 Identities=15% Similarity=0.234 Sum_probs=76.9
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~ 78 (110)
|+.++..+++++|++++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+.. ..++..... ...
T Consensus 84 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~ 157 (189)
T 2gf9_A 84 YRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYS-WDNAQVILVGNKCDLEDERVVPAEDGRRLA-----DDL 157 (189)
T ss_dssp SCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHH
T ss_pred HhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccCCCHHHHHHHH-----HHc
Confidence 45678899999999999999999888877777776654432 2478999999999986432 223322221 112
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHHhhc
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIANKV 108 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 108 (110)
+++++++||++|.|++++++++.+.+.+++
T Consensus 158 ~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~ 187 (189)
T 2gf9_A 158 GFEFFEASAKENINVKQVFERLVDVICEKM 187 (189)
T ss_dssp TCEEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 357899999999999999999999987654
No 48
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.74 E-value=3.4e-17 Score=95.31 Aligned_cols=100 Identities=19% Similarity=0.274 Sum_probs=75.1
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC--CCHHHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~ 78 (110)
++.++..+++++|++++|+|++++.++.....|+..+..... .+.|+++|+||+|+.+. ...++..... ...
T Consensus 77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~ 150 (179)
T 1z0f_A 77 FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN-PNTVIILIGNKADLEAQRDVTYEEAKQFA-----EEN 150 (179)
T ss_dssp TCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHT
T ss_pred hhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECcccccccccCHHHHHHHH-----HHc
Confidence 356788999999999999999998888777777766544322 47899999999998543 2233333321 123
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
+++++++||++|.|++++++++.+.+.+
T Consensus 151 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 151 GLLFLEASAKTGENVEDAFLEAAKKIYQ 178 (179)
T ss_dssp TCEEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 4588999999999999999999987753
No 49
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.74 E-value=1.6e-17 Score=95.91 Aligned_cols=99 Identities=17% Similarity=0.246 Sum_probs=75.5
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC--CCHHHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~ 78 (110)
++.++..+++++|++++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+. ...++..... ...
T Consensus 68 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~-----~~~ 141 (170)
T 1r2q_A 68 YHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADLANKRAVDFQEAQSYA-----DDN 141 (170)
T ss_dssp GGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHT
T ss_pred hhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccccCHHHHHHHH-----HHc
Confidence 35678899999999999999999888888777777765432 257899999999998543 2233333221 123
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHH
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
+++++++||++|.|+++++++|.+.+.
T Consensus 142 ~~~~~~~Sa~~g~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 142 SLLFMETSAKTSMNVNEIFMAIAKKLP 168 (170)
T ss_dssp TCEEEECCTTTCTTHHHHHHHHHHTSC
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 458899999999999999999988764
No 50
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.74 E-value=2.2e-17 Score=96.84 Aligned_cols=101 Identities=22% Similarity=0.313 Sum_probs=76.2
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC--CCHHHHHhhhCCCcccCcc
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRH 79 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~ 79 (110)
+.+|..+++++|++++|+|++++.++.....|+..+..... .+.|+++|+||+|+... ....+..... ...+
T Consensus 73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~ 146 (186)
T 2bme_A 73 RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS-QNIVIILCGNKKDLDADREVTFLEASRFA-----QENE 146 (186)
T ss_dssp HHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTT
T ss_pred HHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECcccccccccCHHHHHHHH-----HHcC
Confidence 45788999999999999999998888777777766543322 57899999999998542 2333332221 1234
Q ss_pred eEEEeeecccCCCHHHHHHHHHHHHHhhc
Q 044598 80 WYIQSTCATSGEGLYEGLDWLSNNIANKV 108 (110)
Q Consensus 80 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 108 (110)
++++++||++|.|++++++++.+.+.+++
T Consensus 147 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 175 (186)
T 2bme_A 147 LMFLETSALTGENVEEAFVQCARKILNKI 175 (186)
T ss_dssp CEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence 58899999999999999999998886543
No 51
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.74 E-value=9.5e-18 Score=99.86 Aligned_cols=102 Identities=12% Similarity=0.054 Sum_probs=76.2
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~ 78 (110)
++.++..+++++|++++|+|++++.++.....|+..+.......+.|+++|+||+|+.+.. ..++..... ...
T Consensus 85 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~ 159 (201)
T 3oes_A 85 YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLA-----ESW 159 (201)
T ss_dssp TCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHH
T ss_pred hHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHH-----HHh
Confidence 3567889999999999999999998888888888877655444578999999999986432 222222211 123
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
+.+++++||++|.|++++|+++.+.+...
T Consensus 160 ~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~ 188 (201)
T 3oes_A 160 GATFMESSARENQLTQGIFTKVIQEIARV 188 (201)
T ss_dssp TCEEEECCTTCHHHHHHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 45789999999999999999999988654
No 52
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=1.5e-17 Score=99.30 Aligned_cols=102 Identities=14% Similarity=0.197 Sum_probs=75.8
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC--CCHHHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~ 78 (110)
|+.++..+++++|++|+|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+. ...++..... ...
T Consensus 88 ~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~-----~~~ 161 (201)
T 2ew1_A 88 FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAEEFS-----EAQ 161 (201)
T ss_dssp GHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHHHHH-----HHH
T ss_pred HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHH-----HHc
Confidence 35578899999999999999999888877777776654332 246899999999998642 2233332221 122
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHHhhc
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIANKV 108 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 108 (110)
+++++++||++|.|+++++.++.+.+..+.
T Consensus 162 ~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~ 191 (201)
T 2ew1_A 162 DMYYLETSAKESDNVEKLFLDLACRLISEA 191 (201)
T ss_dssp TCCEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 357889999999999999999998886543
No 53
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.74 E-value=3.7e-17 Score=97.25 Aligned_cols=100 Identities=15% Similarity=0.235 Sum_probs=75.4
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCcc
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRH 79 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~ 79 (110)
+.+|..+++++|++|+|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+.. ..++..... ...+
T Consensus 71 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~ 144 (203)
T 1zbd_A 71 RTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQVLLVGNKCDMEDERVVSSERGRQLA-----DHLG 144 (203)
T ss_dssp HHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CSSCEEEEEEECTTCTTSCCSCHHHHHHHH-----HHHT
T ss_pred cchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCcccccCHHHHHHHH-----HHCC
Confidence 4578899999999999999999888887777776654332 2478999999999996532 223322221 1123
Q ss_pred eEEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 80 WYIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 80 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
++++++||++|.|+++++++|.+.+..+
T Consensus 145 ~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 172 (203)
T 1zbd_A 145 FEFFEASAKDNINVKQTFERLVDVICEK 172 (203)
T ss_dssp CEEEECBTTTTBSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4789999999999999999999887654
No 54
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.73 E-value=5.9e-17 Score=95.43 Aligned_cols=97 Identities=9% Similarity=0.150 Sum_probs=73.4
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCC----CCCHHHHHhhhCCCcccCcceEEE
Q 044598 8 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN----AMNAAEITDKLGLHSLRQRHWYIQ 83 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~ 83 (110)
|++++|++++|+|++++.++.....|+..+.......+.|+++|+||+|+.. ....++...... .....+++
T Consensus 82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~----~~~~~~~~ 157 (184)
T 3ihw_A 82 FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLST----DLKRCTYY 157 (184)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHH----HTTTCEEE
T ss_pred eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHH----HcCCCeEE
Confidence 7889999999999999999988888888776554335789999999999842 223333332211 01125789
Q ss_pred eeecccCCCHHHHHHHHHHHHHhhc
Q 044598 84 STCATSGEGLYEGLDWLSNNIANKV 108 (110)
Q Consensus 84 ~~Sa~~~~~i~~l~~~l~~~~~~~~ 108 (110)
++||++|.|++++|+++.+.+..+.
T Consensus 158 e~Sa~~~~gv~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 158 ETCATYGLNVERVFQDVAQKVVALR 182 (184)
T ss_dssp EEBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred EecCCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999887653
No 55
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.73 E-value=3.1e-17 Score=96.99 Aligned_cols=101 Identities=15% Similarity=0.199 Sum_probs=76.3
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCC--CCCHHHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN--AMNAAEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~ 78 (110)
++.++..+++++|++++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+ ....++..... ...
T Consensus 85 ~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~-----~~~ 158 (192)
T 2fg5_A 85 FHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHG-PENIVMAIAGNKCDLSDIREVPLKDAKEYA-----ESI 158 (192)
T ss_dssp GGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HTT
T ss_pred hHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHH-----HHc
Confidence 35678899999999999999999888888777777664432 24789999999999864 22334433332 123
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
+++++++||++|.|++++++++.+.+...
T Consensus 159 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 159 GAIVVETSAKNAINIEELFQGISRQIPPL 187 (192)
T ss_dssp TCEEEECBTTTTBSHHHHHHHHHHTCC--
T ss_pred CCEEEEEeCCCCcCHHHHHHHHHHHHHhh
Confidence 46899999999999999999999877543
No 56
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.73 E-value=3.1e-17 Score=95.73 Aligned_cols=101 Identities=13% Similarity=0.247 Sum_probs=71.4
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~ 78 (110)
++.+|..+++++|++++|+|++++.++.....|+..+..... .+.|+++|+||+|+.+.. ..++..... ...
T Consensus 73 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~ 146 (180)
T 2g6b_A 73 FRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERVVKREDGEKLA-----KEY 146 (180)
T ss_dssp ------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTTSCCCSCHHHHHHHH-----HHH
T ss_pred HHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECcccCcccccCHHHHHHHH-----HHc
Confidence 356788899999999999999998888777777766554322 578999999999996532 223322221 112
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
+++++++||++|.|++++++++.+.+.++
T Consensus 147 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 175 (180)
T 2g6b_A 147 GLPFMETSAKTGLNVDLAFTAIAKELKRR 175 (180)
T ss_dssp TCCEEECCTTTCTTHHHHHHHHHHHHHC-
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 34788999999999999999999988653
No 57
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.73 E-value=2.7e-17 Score=97.90 Aligned_cols=101 Identities=22% Similarity=0.293 Sum_probs=76.5
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC--CCHHHHHhhhCCCcccCcc
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRH 79 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~ 79 (110)
+.++..+++++|++|+|+|++++.++.....|+..+..... .+.|+++|+||+|+.+. ....+..... ...+
T Consensus 88 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~ 161 (200)
T 2o52_A 88 RSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLAS-PNIVVILCGNKKDLDPEREVTFLEASRFA-----QENE 161 (200)
T ss_dssp SCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTC-TTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTT
T ss_pred HHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECCCcccccccCHHHHHHHH-----HHcC
Confidence 45688899999999999999998888877777776644322 57999999999998543 2233332221 1234
Q ss_pred eEEEeeecccCCCHHHHHHHHHHHHHhhc
Q 044598 80 WYIQSTCATSGEGLYEGLDWLSNNIANKV 108 (110)
Q Consensus 80 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 108 (110)
++++++||++|.|+++++.++.+.+..++
T Consensus 162 ~~~~~~SA~~g~gi~~l~~~l~~~i~~~~ 190 (200)
T 2o52_A 162 LMFLETSALTGENVEEAFLKCARTILNKI 190 (200)
T ss_dssp CEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 58899999999999999999999886543
No 58
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.73 E-value=1.2e-16 Score=94.57 Aligned_cols=100 Identities=15% Similarity=0.260 Sum_probs=76.3
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCC-CCCHHHHHhhhCCCcccCcc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN-AMNAAEITDKLGLHSLRQRH 79 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~ 79 (110)
++.++..+++++|++++|+|++++.++.....|+..+... .+.|+++|+||+|... ....+++.... ...+
T Consensus 106 ~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~---~~~piilv~NK~D~~~~~~~~~~~~~~~-----~~~~ 177 (208)
T 3clv_A 106 YASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKIS---SNYIIILVANKIDKNKFQVDILEVQKYA-----QDNN 177 (208)
T ss_dssp CTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH---SCCEEEEEEECTTCC-CCSCHHHHHHHH-----HHTT
T ss_pred HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhh---CCCcEEEEEECCCcccccCCHHHHHHHH-----HHcC
Confidence 3567889999999999999999988888777777776543 2499999999999432 22334443332 1234
Q ss_pred eEEEeeecccCCCHHHHHHHHHHHHHhhc
Q 044598 80 WYIQSTCATSGEGLYEGLDWLSNNIANKV 108 (110)
Q Consensus 80 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 108 (110)
++++++||++|.|++++++++.+.+.+++
T Consensus 178 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 206 (208)
T 3clv_A 178 LLFIQTSAKTGTNIKNIFYMLAEEIYKNI 206 (208)
T ss_dssp CEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 58999999999999999999999887654
No 59
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.73 E-value=3.9e-17 Score=93.80 Aligned_cols=101 Identities=16% Similarity=0.242 Sum_probs=75.4
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC-CHHHHHhhhCCCcccCcc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRH 79 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 79 (110)
++.++..+++.+|++++|+|++++.++.....|+..+.......+.|+++|+||+|+.+.. ..++..... ...+
T Consensus 64 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~-----~~~~ 138 (166)
T 2ce2_X 64 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLA-----RSYG 138 (166)
T ss_dssp CCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHH-----HHHT
T ss_pred hhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHH-----HHcC
Confidence 3567888999999999999999988887777777665443222479999999999986532 233322221 1123
Q ss_pred eEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 80 WYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 80 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
++++++||++|.|++++++++.+.+.+
T Consensus 139 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 165 (166)
T 2ce2_X 139 IPYIETSAKTRQGVEDAFYTLVREIRQ 165 (166)
T ss_dssp CCEEEECTTTCTTHHHHHHHHHHHHHT
T ss_pred CeEEEecCCCCCCHHHHHHHHHHHHHh
Confidence 478899999999999999999988754
No 60
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.73 E-value=6.6e-17 Score=95.65 Aligned_cols=101 Identities=17% Similarity=0.164 Sum_probs=75.1
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCcc
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRH 79 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~ 79 (110)
+.+|..+++++|++|+|+|++++.++.....|+..+... ...+.|+++|+||+|+.+.. ..++...... ....
T Consensus 89 ~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~-~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~----~~~~ 163 (192)
T 2il1_A 89 NSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREITRQQGEKFAQ----QITG 163 (192)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH----TSTT
T ss_pred HHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHH----hcCC
Confidence 457889999999999999999988887776665554332 22479999999999986432 2333322211 0124
Q ss_pred eEEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 80 WYIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 80 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
.+++++||++|.|++++++++.+.+.++
T Consensus 164 ~~~~~~SA~~g~gi~~l~~~l~~~i~~~ 191 (192)
T 2il1_A 164 MRFCEASAKDNFNVDEIFLKLVDDILKK 191 (192)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 5889999999999999999999988765
No 61
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.73 E-value=2.6e-17 Score=98.03 Aligned_cols=101 Identities=14% Similarity=0.139 Sum_probs=67.5
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCC--CCCCeEEEEeeCCCCCC-C--CCHHHHHhhhCCCccc
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPN-A--MNAAEITDKLGLHSLR 76 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~iiv~nK~Dl~~-~--~~~~~~~~~~~~~~~~ 76 (110)
+.+|..+++++|++|+|+|++++.++.....|+..+..... ..+.|+++|+||+|+.+ . ...++..... .
T Consensus 87 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~-----~ 161 (208)
T 2yc2_C 87 KEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWA-----T 161 (208)
T ss_dssp HHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHH-----H
T ss_pred HHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHH-----H
Confidence 45678899999999999999998888888777777654322 24789999999999965 2 2333333322 1
Q ss_pred CcceEEEeeeccc-CCCHHHHHHHHHHHHHhh
Q 044598 77 QRHWYIQSTCATS-GEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 77 ~~~~~~~~~Sa~~-~~~i~~l~~~l~~~~~~~ 107 (110)
..+++++++||++ |.|++++++++.+.+.+.
T Consensus 162 ~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~~~~ 193 (208)
T 2yc2_C 162 TNTLDFFDVSANPPGKDADAPFLSIATTFYRN 193 (208)
T ss_dssp HTTCEEEECCC-------CHHHHHHHHHHHHH
T ss_pred HcCCEEEEeccCCCCcCHHHHHHHHHHHHHHH
Confidence 2235899999999 999999999999887643
No 62
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.72 E-value=4.8e-17 Score=94.84 Aligned_cols=100 Identities=19% Similarity=0.279 Sum_probs=75.7
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~ 78 (110)
++.++..+++++|++++|+|++++.++.....|+..+... ..+.|+++|+||+|+.+.. ..++..... ...
T Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~ 143 (181)
T 3tw8_B 71 FRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQN--CDDVCRILVGNKNDDPERKVVETEDAYKFA-----GQM 143 (181)
T ss_dssp CSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH--CTTSEEEEEEECTTCGGGCCSCHHHHHHHH-----HHH
T ss_pred hhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECCCCchhcccCHHHHHHHH-----HHc
Confidence 3567888999999999999999988888877777766543 2479999999999986532 222222211 112
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
+.+++++||++|.|++++++++.+.+...
T Consensus 144 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 172 (181)
T 3tw8_B 144 GIQLFETSAKENVNVEEMFNCITELVLRA 172 (181)
T ss_dssp TCCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 34788999999999999999999987653
No 63
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=2.6e-17 Score=97.57 Aligned_cols=100 Identities=17% Similarity=0.181 Sum_probs=75.7
Q ss_pred chHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC--CCHHHHHhhhCCCcccCcce
Q 044598 3 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHW 80 (110)
Q Consensus 3 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~ 80 (110)
.++..+++.+|++++|+|++++.++.....|+..+.......+.|+++|+||+|+.+. ...++..... ...++
T Consensus 90 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~ 164 (196)
T 2atv_A 90 IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLA-----TELAC 164 (196)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTS
T ss_pred cchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHH-----HHhCC
Confidence 4688899999999999999998888877777666554322357899999999998653 2233322221 12245
Q ss_pred EEEeeecccCC-CHHHHHHHHHHHHHhh
Q 044598 81 YIQSTCATSGE-GLYEGLDWLSNNIANK 107 (110)
Q Consensus 81 ~~~~~Sa~~~~-~i~~l~~~l~~~~~~~ 107 (110)
+++++||++|. |++++++++.+.+.++
T Consensus 165 ~~~~~Sa~~g~~gi~~l~~~l~~~i~~~ 192 (196)
T 2atv_A 165 AFYECSACTGEGNITEIFYELCREVRRR 192 (196)
T ss_dssp EEEECCTTTCTTCHHHHHHHHHHHHHHH
T ss_pred eEEEECCCcCCcCHHHHHHHHHHHHHhh
Confidence 88999999999 9999999999988754
No 64
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.72 E-value=2e-17 Score=95.69 Aligned_cols=99 Identities=19% Similarity=0.212 Sum_probs=71.6
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC--CCHHHHHhhhCCCcccCcc
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRH 79 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~ 79 (110)
+.++..+++++|++++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+. ...++..... ...+
T Consensus 69 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~ 142 (170)
T 1z08_A 69 HALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAESYA-----ESVG 142 (170)
T ss_dssp ----CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHH-GGGSEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTT
T ss_pred hhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccccccccCHHHHHHHH-----HHcC
Confidence 4577889999999999999999888887777766653321 146899999999998643 2333333221 1224
Q ss_pred eEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 80 WYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 80 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
.+++++||++|.|++++++++.+.+.+
T Consensus 143 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 169 (170)
T 1z08_A 143 AKHYHTSAKQNKGIEELFLDLCKRMIE 169 (170)
T ss_dssp CEEEEEBTTTTBSHHHHHHHHHHHHHC
T ss_pred CeEEEecCCCCCCHHHHHHHHHHHHhh
Confidence 578999999999999999999988754
No 65
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.72 E-value=3.5e-17 Score=98.87 Aligned_cols=102 Identities=19% Similarity=0.257 Sum_probs=74.3
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC--CCHHHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~ 78 (110)
|+.+|..+++++|++|+|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+. ...++..... ...
T Consensus 75 ~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~ 148 (223)
T 3cpj_B 75 YRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKTFA-----QEN 148 (223)
T ss_dssp TTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHHHH-----HHT
T ss_pred hhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHH-----HHc
Confidence 45678899999999999999999888888777777665432 247899999999998642 2333332221 123
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHHhhc
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIANKV 108 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 108 (110)
+++++++||++|.|++++++++.+.+..+.
T Consensus 149 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 178 (223)
T 3cpj_B 149 QLLFTETSALNSENVDKAFEELINTIYQKV 178 (223)
T ss_dssp TCEEEECCCC-CCCHHHHHHHHHHHHTTCC
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 458899999999999999999999886543
No 66
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.72 E-value=1e-17 Score=107.49 Aligned_cols=107 Identities=24% Similarity=0.389 Sum_probs=81.8
Q ss_pred CcchHHHhcccCCEEEEEEECCC----------hhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCC-----------
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSND----------RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN----------- 59 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~----------- 59 (110)
||++|.+||++++++|||+|.++ ..++.++..|+..+.......+.|+++++||+|+..
T Consensus 206 ~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~ 285 (353)
T 1cip_A 206 ERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 285 (353)
T ss_dssp GGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHHTTSCGGGT
T ss_pred hhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCchhhhccccchhhc
Confidence 57899999999999999999998 456888888998888765567899999999999831
Q ss_pred ------CCCHHHHHhhh-----CCCcc-cCcceEEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 60 ------AMNAAEITDKL-----GLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 60 ------~~~~~~~~~~~-----~~~~~-~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
..+.++..... .+... ....+.+++|||+++.|+.++|.++.+.+...
T Consensus 286 fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~ 345 (353)
T 1cip_A 286 YPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN 345 (353)
T ss_dssp CTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHH
Confidence 12333332222 11111 13567899999999999999999999887643
No 67
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.72 E-value=8.1e-17 Score=93.04 Aligned_cols=99 Identities=18% Similarity=0.203 Sum_probs=74.4
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~ 78 (110)
++.++..+++++|++++|+|++++.++.....|+..+... ..+..|+++|+||+|+.+.. ..++..... ...
T Consensus 68 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~-----~~~ 141 (170)
T 1z0j_A 68 FRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDYA-----DSI 141 (170)
T ss_dssp GGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHHH-----HHT
T ss_pred hhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECCccccccccCHHHHHHHH-----HHc
Confidence 3567888999999999999999988887777776665443 23578999999999986432 233322221 123
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHH
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
+.+++++||++|.|++++++++.+.+.
T Consensus 142 ~~~~~~~Sa~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 142 HAIFVETSAKNAININELFIEISRRIP 168 (170)
T ss_dssp TCEEEECBTTTTBSHHHHHHHHHHHCC
T ss_pred CCEEEEEeCCCCcCHHHHHHHHHHHHh
Confidence 458899999999999999999988764
No 68
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.72 E-value=2.9e-17 Score=97.15 Aligned_cols=100 Identities=13% Similarity=0.092 Sum_probs=72.8
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHH-HHHHHHhcCCCCCCCeEEEEeeCCCCCCC----CCHHHHHhhhCCCcc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNA----MNAAEITDKLGLHSL 75 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~----~~~~~~~~~~~~~~~ 75 (110)
|+.++..+++++|++++|+|++++.++.... .|+..+... ..+.|+++|+||+|+.+. ...++.....
T Consensus 84 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~----- 156 (194)
T 3reg_A 84 YDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHY--IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLC----- 156 (194)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHH-----
T ss_pred HHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccCCCCcccHHHHHHHH-----
Confidence 3567889999999999999999998888763 444443322 257999999999998642 2233332221
Q ss_pred cCcceE-EEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 76 RQRHWY-IQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 76 ~~~~~~-~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
...+.. ++++||++|.|++++++++.+.+..+
T Consensus 157 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 189 (194)
T 3reg_A 157 QKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSN 189 (194)
T ss_dssp HHHTCSCEEECBTTTTBSHHHHHHHHHHHHHCS
T ss_pred HhcCCCEEEEeecCCCCCHHHHHHHHHHHHHhc
Confidence 111223 88999999999999999999988654
No 69
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.72 E-value=2.8e-17 Score=97.71 Aligned_cols=101 Identities=14% Similarity=0.259 Sum_probs=72.1
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCC--------CCCHHHHHhhhCC
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN--------AMNAAEITDKLGL 72 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~--------~~~~~~~~~~~~~ 72 (110)
|+.++..+++++|++|+|+|++++.++.....|+..+... ...+.|+++|+||+|+.+ ....++....
T Consensus 90 ~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~--- 165 (199)
T 2p5s_A 90 FRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDA-AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKL--- 165 (199)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHH-C---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHH---
T ss_pred hhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccccccccCHHHHHHH---
Confidence 3567889999999999999999988887777766655332 124689999999999842 1122222211
Q ss_pred CcccCcceEEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 73 HSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 73 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
....+++++++||++|.|+++++.++.+.+.++
T Consensus 166 --~~~~~~~~~~~SA~~g~gv~el~~~l~~~i~~~ 198 (199)
T 2p5s_A 166 --AMTYGALFCETSAKDGSNIVEAVLHLAREVKKR 198 (199)
T ss_dssp --HHHHTCEEEECCTTTCTTHHHHHHHHHHHHTC-
T ss_pred --HHHcCCeEEEeeCCCCCCHHHHHHHHHHHHHhh
Confidence 112345789999999999999999999987643
No 70
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.72 E-value=2.2e-17 Score=99.60 Aligned_cols=101 Identities=15% Similarity=0.177 Sum_probs=77.0
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcce
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 80 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 80 (110)
|+.++..+++++|++++|+|++++.++.....|+..+.... .+.|+++|+||+|+.+.....+.... ....+.
T Consensus 77 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~-----~~~~~~ 149 (221)
T 3gj0_A 77 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAKSIVF-----HRKKNL 149 (221)
T ss_dssp TSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS--TTCCEEEEEECTTSSSCSSCGGGCCH-----HHHHTC
T ss_pred HhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCccccccccHHHHHH-----HHHcCC
Confidence 45678899999999999999999888887777777765432 47899999999999654322111111 122345
Q ss_pred EEEeeecccCCCHHHHHHHHHHHHHhhc
Q 044598 81 YIQSTCATSGEGLYEGLDWLSNNIANKV 108 (110)
Q Consensus 81 ~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 108 (110)
+++++||++|.|+++++.++.+.+....
T Consensus 150 ~~~~~Sa~~~~gi~~l~~~l~~~l~~~~ 177 (221)
T 3gj0_A 150 QYYDISAKSNYNFEKPFLWLARKLIGDP 177 (221)
T ss_dssp EEEECBGGGTBTTTHHHHHHHHHHHTCT
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHhCc
Confidence 8899999999999999999999886543
No 71
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.72 E-value=1.2e-16 Score=94.74 Aligned_cols=100 Identities=16% Similarity=0.134 Sum_probs=72.8
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC--CCHHHHHhhhCCCcccCcc
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRH 79 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~ 79 (110)
+.++..|++.+|++++|+|.+++.++.....|+..+.......+.|+++|+||+|+... ...++.... ....+
T Consensus 71 ~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~-----a~~~~ 145 (192)
T 2cjw_A 71 EWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAX-----AVVFD 145 (192)
T ss_dssp CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHH-----HHHTT
T ss_pred hhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHH-----HHHhC
Confidence 45678889999999999999999888887777665543222247899999999998532 222221111 01123
Q ss_pred eEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 80 WYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 80 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
.+++++||++|.|++++|.++.+.+..
T Consensus 146 ~~~~e~SA~~g~~v~~lf~~l~~~~~~ 172 (192)
T 2cjw_A 146 XKFIETSAAVQHNVKELFEGIVRQVRL 172 (192)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CceEEeccccCCCHHHHHHHHHHHHHh
Confidence 478899999999999999999988754
No 72
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.71 E-value=9.3e-17 Score=93.53 Aligned_cols=102 Identities=14% Similarity=0.184 Sum_probs=73.5
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCC-CCCCCe-EEEEeeCCCCCCC--CCHHHHHhhhCCCccc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNED-ELRDAV-LLVFANKQDLPNA--MNAAEITDKLGLHSLR 76 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~ 76 (110)
++.+|..+++++|++++|+|++++.++.....|+..+.... ...+.| +++|+||+|+.+. ...++..... .
T Consensus 69 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~-----~ 143 (178)
T 2hxs_A 69 GGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFC-----Q 143 (178)
T ss_dssp TCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHH-----H
T ss_pred ccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHH-----H
Confidence 45688999999999999999999888877766666553311 011344 8999999998643 2233332221 1
Q ss_pred CcceEEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 77 QRHWYIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 77 ~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
..+++++++||++|.|++++++++.+.+.+.
T Consensus 144 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 144 ENGFSSHFVSAKTGDSVFLCFQKVAAEILGI 174 (178)
T ss_dssp HHTCEEEEECTTTCTTHHHHHHHHHHHHTTC
T ss_pred HcCCcEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 2245789999999999999999999988654
No 73
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.71 E-value=3.1e-17 Score=94.62 Aligned_cols=99 Identities=15% Similarity=0.229 Sum_probs=75.1
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC--CCHHHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~ 78 (110)
++.++..+++++|++++|+|++++.++.....|+..+.... .+.|+++|+||+|+.+. ...++..... ...
T Consensus 67 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~ 139 (168)
T 1z2a_A 67 FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLA-----KRL 139 (168)
T ss_dssp TTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHH-----HHH
T ss_pred HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHH-----HHc
Confidence 35678899999999999999999888877777776664432 47899999999998642 2333332221 122
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
+.+++++||++|.|++++++++.+.+.+
T Consensus 140 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 140 KLRFYRTSVKEDLNVSEVFKYLAEKHLQ 167 (168)
T ss_dssp TCEEEECBTTTTBSSHHHHHHHHHHHHC
T ss_pred CCeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 4588999999999999999999988764
No 74
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.71 E-value=1.8e-17 Score=95.41 Aligned_cols=101 Identities=15% Similarity=0.175 Sum_probs=75.6
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~ 78 (110)
++.++..+++++|++++|+|++++.++.....++..+.......+.|+++|+||+|+.+.. ..++..... ...
T Consensus 64 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~ 138 (167)
T 1kao_A 64 FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALA-----EEW 138 (167)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHH
T ss_pred hHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHH-----HHh
Confidence 3567889999999999999999988888777777766554333579999999999985432 222222211 112
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
+++++++||++|.|++++++++.+.+.+
T Consensus 139 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 166 (167)
T 1kao_A 139 GCPFMETSAKSKTMVDELFAEIVRQMNY 166 (167)
T ss_dssp TSCEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEecCCCCcCHHHHHHHHHHHHhh
Confidence 3478899999999999999999988753
No 75
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.71 E-value=1.2e-16 Score=96.01 Aligned_cols=101 Identities=16% Similarity=0.161 Sum_probs=75.0
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~ 78 (110)
++.++..+++++|++|+|+|+++..++.....|+..+.... ..+.|+++|+||+|+.+.. ..+...... ...
T Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~ 147 (218)
T 4djt_A 74 KAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVV-GNEAPIVVCANKIDIKNRQKISKKLVMEVL-----KGK 147 (218)
T ss_dssp TSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-CSSSCEEEEEECTTCC----CCHHHHHHHT-----TTC
T ss_pred hchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHH-----HHc
Confidence 35678889999999999999999888877776666554332 1358999999999986542 233332221 234
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
+++++++||++|.|+++++.++.+.+...
T Consensus 148 ~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~ 176 (218)
T 4djt_A 148 NYEYFEISAKTAHNFGLPFLHLARIFTGR 176 (218)
T ss_dssp CCEEEEEBTTTTBTTTHHHHHHHHHHHCC
T ss_pred CCcEEEEecCCCCCHHHHHHHHHHHHhcc
Confidence 56899999999999999999999988654
No 76
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.71 E-value=1.1e-16 Score=94.54 Aligned_cols=98 Identities=10% Similarity=0.044 Sum_probs=71.7
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHH-HHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--------------CHHH
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNAM--------------NAAE 65 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--------------~~~~ 65 (110)
|+.++..+++++|++++|+|++++.++.... .|+..+... ..+.|+++|+||+|+.+.. ..++
T Consensus 79 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 156 (194)
T 2atx_A 79 YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY--APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQ 156 (194)
T ss_dssp STTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHH
T ss_pred hhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhcccccchhhcccccCcccCHHH
Confidence 4567889999999999999999988888776 455554432 2478999999999996531 1122
Q ss_pred HHhhhCCCcccCcce-EEEeeecccCCCHHHHHHHHHHHHH
Q 044598 66 ITDKLGLHSLRQRHW-YIQSTCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 66 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
..... ...+. +++++||++|.|++++++++.+.+.
T Consensus 157 ~~~~~-----~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 157 GQKLA-----KEIGACCYVECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp HHHHH-----HHHTCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHH-----HHcCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 11110 01122 6889999999999999999998775
No 77
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.71 E-value=5.5e-17 Score=97.05 Aligned_cols=100 Identities=19% Similarity=0.267 Sum_probs=74.2
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC-CHHHHHhhhCCCcccCcce
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHW 80 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~ 80 (110)
+.+|..+++++|++++|+|++++.++.....|+..+..... .+.|+++|+||+|+.... ..++..... ...++
T Consensus 83 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~ 156 (213)
T 3cph_A 83 RTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAN-DEAQLLLVGNKSDMETRVVTADQGEALA-----KELGI 156 (213)
T ss_dssp TCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTT-TCSEEEEEEECTTCSSCCSCHHHHHHHH-----HHHTC
T ss_pred HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECCCCcccccCHHHHHHHH-----HHcCC
Confidence 45788899999999999999998888777777766544322 468999999999994332 222222211 11234
Q ss_pred EEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 81 YIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 81 ~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
+++++||++|.|+++++.++.+.+.++
T Consensus 157 ~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 183 (213)
T 3cph_A 157 PFIESSAKNDDNVNEIFFTLAKLIQEK 183 (213)
T ss_dssp CEEECBTTTTBSSHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 688999999999999999999988654
No 78
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.71 E-value=3.1e-17 Score=98.70 Aligned_cols=100 Identities=13% Similarity=0.079 Sum_probs=74.3
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHH-HHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC--------------CCHHH
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVE-ARDELHRMLNEDELRDAVLLVFANKQDLPNA--------------MNAAE 65 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~--------------~~~~~ 65 (110)
|+.++..|++++|++|+|+|++++.++.. ...|+..+... ..+.|+++|+||+|+.+. ...++
T Consensus 88 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 165 (214)
T 3q3j_B 88 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDY--CPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQ 165 (214)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHH--CTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHH
T ss_pred HHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccchhhhhhhcccccCccCHHH
Confidence 45688999999999999999999888887 45666655433 257999999999998642 22222
Q ss_pred HHhhhCCCcccCcce-EEEeeecccCCC-HHHHHHHHHHHHHhh
Q 044598 66 ITDKLGLHSLRQRHW-YIQSTCATSGEG-LYEGLDWLSNNIANK 107 (110)
Q Consensus 66 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~~-i~~l~~~l~~~~~~~ 107 (110)
..... ...++ +++++||++|.| ++++|+++.+.+..+
T Consensus 166 ~~~~~-----~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~ 204 (214)
T 3q3j_B 166 GCAIA-----KQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNK 204 (214)
T ss_dssp HHHHH-----HHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC-
T ss_pred HHHHH-----HHcCCCEEEEeccCCCcccHHHHHHHHHHHHhcc
Confidence 22211 12244 789999999998 999999999988654
No 79
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.71 E-value=1.2e-16 Score=93.03 Aligned_cols=102 Identities=10% Similarity=0.165 Sum_probs=75.3
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcC---CCCCCCeEEEEeeCCCCCCC-CCHHHHHhhhCCCcccC
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNE---DELRDAVLLVFANKQDLPNA-MNAAEITDKLGLHSLRQ 77 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~iiv~nK~Dl~~~-~~~~~~~~~~~~~~~~~ 77 (110)
+.++..+++++|++++|+|++++.++.....|+..+... ....+.|+++|+||+|+... ...++...... ..
T Consensus 70 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~----~~ 145 (177)
T 1wms_A 70 RSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCR----DN 145 (177)
T ss_dssp HHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHH----HT
T ss_pred hhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHH----hc
Confidence 457888999999999999999988877766666655432 11256899999999998632 23334333221 02
Q ss_pred cceEEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 78 RHWYIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 78 ~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
...+++++||++|.|++++++++.+.+.++
T Consensus 146 ~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 146 GDYPYFETSAKDATNVAAAFEEAVRRVLAT 175 (177)
T ss_dssp TCCCEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 345789999999999999999999988653
No 80
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.71 E-value=9e-17 Score=93.74 Aligned_cols=103 Identities=9% Similarity=0.121 Sum_probs=71.8
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCC---CCCCCeEEEEeeCCCCCCC---CCHHHHHhhhCCCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNED---ELRDAVLLVFANKQDLPNA---MNAAEITDKLGLHS 74 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~~iiv~nK~Dl~~~---~~~~~~~~~~~~~~ 74 (110)
++.++..+++++|++++|+|++++.++.....|+..+.... ...+.|+++|+||+|+... ...++......
T Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~--- 147 (182)
T 1ky3_A 71 FQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK--- 147 (182)
T ss_dssp ------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH---
T ss_pred hhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHH---
Confidence 35678889999999999999999888877777766654321 2257899999999998532 12333322211
Q ss_pred ccCcceEEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 75 LRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 75 ~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
.....+++++||++|.|++++++++.+.+.++
T Consensus 148 -~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 148 -SLGDIPLFLTSAKNAINVDTAFEEIARSALQQ 179 (182)
T ss_dssp -HTTSCCEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred -hcCCCeEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 02345788999999999999999999988755
No 81
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.70 E-value=3e-17 Score=105.64 Aligned_cols=106 Identities=22% Similarity=0.363 Sum_probs=77.5
Q ss_pred CcchHHHhcccCCEEEEEEECCC----------hhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCC-----------
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSND----------RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN----------- 59 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~----------- 59 (110)
+|++|.+|+++++++|||+|.++ ..++.++..++..+.......+.|+++++||+|+..
T Consensus 214 ~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~ 293 (362)
T 1zcb_A 214 ERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDY 293 (362)
T ss_dssp ----CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGT
T ss_pred hhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhhhccccchhhc
Confidence 57899999999999999999998 668888888998887765557899999999999841
Q ss_pred ------C-CCHHHHHhhh-----CCCccc-CcceEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 60 ------A-MNAAEITDKL-----GLHSLR-QRHWYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 60 ------~-~~~~~~~~~~-----~~~~~~-~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
. .+.++....+ .+.... .+++.+++|||++++|++++|.++.+.+..
T Consensus 294 fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~ 353 (362)
T 1zcb_A 294 FLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH 353 (362)
T ss_dssp CTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred CccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHH
Confidence 1 2333333221 221111 346788999999999999999999888754
No 82
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.70 E-value=1.2e-16 Score=94.10 Aligned_cols=101 Identities=15% Similarity=0.240 Sum_probs=69.8
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC-CHHHHHhhhCCCcccCcce
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHW 80 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~ 80 (110)
+.++..+++.+|++++|+|++++.++.....|+..+.......+.|+++|+||+|+.+.. ..++..... ...++
T Consensus 83 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~ 157 (190)
T 3con_A 83 SAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELA-----KSYGI 157 (190)
T ss_dssp -------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHH-----HHHTC
T ss_pred HHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHH-----HHcCC
Confidence 567888999999999999999988887777666655433222478999999999986532 333333221 11234
Q ss_pred EEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 81 YIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 81 ~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
+++++||++|.|++++++++.+.+.+.
T Consensus 158 ~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 184 (190)
T 3con_A 158 PFIETSAKTRQGVEDAFYTLVREIRQY 184 (190)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 688999999999999999999988654
No 83
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.70 E-value=6.6e-16 Score=90.02 Aligned_cols=97 Identities=11% Similarity=0.120 Sum_probs=69.8
Q ss_pred HHhcccCCEEEEEEECCChhhHHHHHHHH---HHHhcCCCCCCCeEEEEeeCCCCCC----CCCHHHHHhhhCCCcccCc
Q 044598 6 RHYFQNTQGLIFVVDSNDRDRVVEARDEL---HRMLNEDELRDAVLLVFANKQDLPN----AMNAAEITDKLGLHSLRQR 78 (110)
Q Consensus 6 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~iiv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~ 78 (110)
..|++++|++++|+|++++.++.....|+ ...... ...+.|+++|+||+|+.+ ....++...... ...
T Consensus 67 ~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~----~~~ 141 (178)
T 2iwr_A 67 AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGE-GRGGLALALVGTQDRISASSPRVVGDARARALXA----DMK 141 (178)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCS-SSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHH----HHS
T ss_pred hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECccccccccCcCCHHHHHHHHH----hhc
Confidence 46789999999999999998888877654 333222 225789999999999832 223333332211 012
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
..+++++||++|.|++++|+++.+.+.+.
T Consensus 142 ~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 170 (178)
T 2iwr_A 142 RCSYYETXATYGLNVDRVFQEVAQKVVTL 170 (178)
T ss_dssp SEEEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeccccCCHHHHHHHHHHHHHHH
Confidence 46899999999999999999999887653
No 84
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.70 E-value=5.8e-17 Score=95.51 Aligned_cols=99 Identities=15% Similarity=0.168 Sum_probs=71.8
Q ss_pred chHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCcce
Q 044598 3 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHW 80 (110)
Q Consensus 3 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~ 80 (110)
.++..|++++|++|+|+|++++.++.....|+..+.......+.|+++|+||+|+.+.. ..++..... ...++
T Consensus 85 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~ 159 (189)
T 1z06_A 85 SMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFA-----DTHSM 159 (189)
T ss_dssp TTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTC
T ss_pred hhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHH-----HHcCC
Confidence 57889999999999999999988888777777776554333579999999999985432 233322221 12234
Q ss_pred EEEeeecccC---CCHHHHHHHHHHHHHh
Q 044598 81 YIQSTCATSG---EGLYEGLDWLSNNIAN 106 (110)
Q Consensus 81 ~~~~~Sa~~~---~~i~~l~~~l~~~~~~ 106 (110)
+++++||+++ .|+++++.+|.+.+.+
T Consensus 160 ~~~~~Sa~~~~~~~~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 160 PLFETSAKNPNDNDHVEAIFMTLAHKLKS 188 (189)
T ss_dssp CEEECCSSSGGGGSCHHHHHHHHC-----
T ss_pred EEEEEeCCcCCcccCHHHHHHHHHHHHhh
Confidence 7889999999 9999999999887643
No 85
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.70 E-value=7e-18 Score=100.31 Aligned_cols=103 Identities=17% Similarity=0.236 Sum_probs=68.2
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCC--HHHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~ 78 (110)
++.++..+++++|++++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+... .++.... ....
T Consensus 95 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~-----~~~~ 168 (199)
T 3l0i_B 95 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEF-----ADSL 168 (199)
T ss_dssp CCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC--CCSEEEEC-CCSSCC--CCCCSCC-CHH-----HHTT
T ss_pred HHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-cCCCCEEEEEECccCCccccCCHHHHHHH-----HHHc
Confidence 35677889999999999999999888888877777765432 24799999999999864321 1111111 1122
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHHhhcC
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIANKVG 109 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 109 (110)
+.+++++||++|.|+++++++|.+.+.+++|
T Consensus 169 ~~~~~~vSA~~g~gv~~l~~~l~~~l~~~~g 199 (199)
T 3l0i_B 169 GIPFLETSAKNATNVEQSFMTMAAEIKKRMG 199 (199)
T ss_dssp TCCBCCCCC---HHHHHHHHHHTTTTTTTC-
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcC
Confidence 3467899999999999999999998887764
No 86
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.70 E-value=9.2e-17 Score=95.68 Aligned_cols=102 Identities=13% Similarity=0.134 Sum_probs=74.6
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCC---CCCCCeEEEEeeCCCCCCCC-CHHHHHhhhCCCcccC
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNED---ELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQ 77 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~ 77 (110)
+.++..+++++|++|+|+|++++.++.....|+..+.... ...+.|+++|+||+|+.... ..++...... ..
T Consensus 71 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~ 146 (207)
T 1vg8_A 71 QSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCY----SK 146 (207)
T ss_dssp SCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHH----HT
T ss_pred HHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHH----hc
Confidence 4577889999999999999999888877766666554321 12468999999999996432 2333332211 12
Q ss_pred cceEEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 78 RHWYIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 78 ~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
...+++++||++|.|++++++++.+.+..+
T Consensus 147 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 176 (207)
T 1vg8_A 147 NNIPYFETSAKEAINVEQAFQTIARNALKQ 176 (207)
T ss_dssp TSCCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 345789999999999999999999887643
No 87
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.70 E-value=6.3e-17 Score=94.19 Aligned_cols=100 Identities=16% Similarity=0.252 Sum_probs=74.4
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~ 78 (110)
++.++..+++++|++++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+.. ..++..... ...
T Consensus 76 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~ 149 (179)
T 2y8e_A 76 FRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTEEGERKA-----KEL 149 (179)
T ss_dssp GGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECGGGGGGCCSCHHHHHHHH-----HHH
T ss_pred HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccCcCCHHHHHHHH-----HHc
Confidence 35678899999999999999999888877777776664432 2478999999999985432 223322221 122
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
+.+++++||++|.|++++++++.+.+.+
T Consensus 150 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 150 NVMFIETSAKAGYNVKQLFRRVAAALPG 177 (179)
T ss_dssp TCEEEEEBTTTTBSHHHHHHHHHHTCC-
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 4588999999999999999999987654
No 88
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.70 E-value=1.8e-16 Score=94.21 Aligned_cols=100 Identities=10% Similarity=0.019 Sum_probs=73.0
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHH-HHHHHHhcCCCCCCCeEEEEeeCCCCCCC--------------CCHHH
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNA--------------MNAAE 65 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~--------------~~~~~ 65 (110)
|+.+|..+++++|++++|+|++++.++.... .|+..+... ..+.|+++|+||+|+.+. ...++
T Consensus 81 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 158 (201)
T 2q3h_A 81 FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCH--CPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEA 158 (201)
T ss_dssp CSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHH
T ss_pred HHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHH
Confidence 4567889999999999999999988888775 465554432 147999999999998542 11222
Q ss_pred HHhhhCCCcccCcc-eEEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 66 ITDKLGLHSLRQRH-WYIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 66 ~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
..... ...+ .+++++||++|.|++++++++.+.+.+.
T Consensus 159 ~~~~~-----~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 196 (201)
T 2q3h_A 159 AKLLA-----EEIKAASYIECSALTQKNLKEVFDAAIVAGIQY 196 (201)
T ss_dssp HHHHH-----HHHTCSEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHH-----HhcCCcEEEEEecCCCCCHHHHHHHHHHHHhcc
Confidence 11111 1112 3789999999999999999999887643
No 89
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.69 E-value=2.2e-16 Score=94.02 Aligned_cols=98 Identities=13% Similarity=0.105 Sum_probs=69.9
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHH-HHHHHHhcCCCCCCCeEEEEeeCCCCCCCCC--------------HHH
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNAMN--------------AAE 65 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~--------------~~~ 65 (110)
|+.++..+++++|++++|+|++++.++.... .|+..+... ..+.|+++|+||+|+.+... .++
T Consensus 86 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 163 (201)
T 2gco_A 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEE 163 (201)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHH
T ss_pred HHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHH
Confidence 3567888999999999999999988887774 444433222 24789999999999965421 111
Q ss_pred HHhhhCCCcccCcce-EEEeeecccCCCHHHHHHHHHHHHH
Q 044598 66 ITDKLGLHSLRQRHW-YIQSTCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 66 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
.... ....+. +++++||++|.|++++++++.+.+.
T Consensus 164 ~~~~-----~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 164 GRDM-----ANRISAFGYLECSAKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp HHHH-----HHHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHH-----HHhCCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 1111 011122 7899999999999999999998764
No 90
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.69 E-value=1.8e-17 Score=102.19 Aligned_cols=91 Identities=12% Similarity=0.060 Sum_probs=64.5
Q ss_pred cCCEEEEEEECCCh--hhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEEeeecc
Q 044598 11 NTQGLIFVVDSNDR--DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCAT 88 (110)
Q Consensus 11 ~~~~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 88 (110)
+||++|+|+|++++ .+++....|+..+.......+.|+++|+||+|+......++...... ....++++++||+
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~----~~~~~~~~e~SAk 237 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFAL----SKKNLQVVETSAR 237 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHH----TSSSCCEEECBTT
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHH----hcCCCeEEEEECC
Confidence 79999999999987 78888777777665431124689999999999854321222222110 1124578999999
Q ss_pred cCCCHHHHHHHHHHHHH
Q 044598 89 SGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 89 ~~~~i~~l~~~l~~~~~ 105 (110)
+|.|++++|+++.+.+.
T Consensus 238 ~g~gv~elf~~l~~~l~ 254 (255)
T 3c5h_A 238 SNVNVDLAFSTLVQLID 254 (255)
T ss_dssp TTBSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhc
Confidence 99999999999998764
No 91
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.68 E-value=1.8e-16 Score=95.27 Aligned_cols=100 Identities=9% Similarity=0.023 Sum_probs=64.9
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHH-HHHHHHhcCCCCCCCeEEEEeeCCCCCCCCC--------------HHH
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNAMN--------------AAE 65 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~--------------~~~ 65 (110)
|+.++..+++++|++++|+|++++.++.... .|+..+... ..+.|+++|+||+|+..... .++
T Consensus 95 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 172 (214)
T 2j1l_A 95 YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHF--CKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHR 172 (214)
T ss_dssp ----------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHH--CSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHH
T ss_pred hhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhhccchhhhhhcccccCcccHHH
Confidence 3567888999999999999999988888775 455544322 24789999999999865321 111
Q ss_pred HHhhhCCCcccCcce-EEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 66 ITDKLGLHSLRQRHW-YIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 66 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
..... ...+. +++++||++|.|++++++++.+.+.+.
T Consensus 173 ~~~~~-----~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 173 GQEMA-----RSVGAVAYLECSARLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp HHHHH-----HHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHC
T ss_pred HHHHH-----HhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 11110 11233 789999999999999999999988654
No 92
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.68 E-value=1e-16 Score=93.70 Aligned_cols=98 Identities=8% Similarity=0.014 Sum_probs=71.0
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHH-HHHHHHhcCCCCCCCeEEEEeeCCCCCCCC------------CHHHHH
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNAM------------NAAEIT 67 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~------------~~~~~~ 67 (110)
|+.++..+++++|++++|+|++++.++.... .|+..+... ..+.|+++|+||+|+.+.. ..++..
T Consensus 69 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~ 146 (182)
T 3bwd_D 69 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHY--APGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGE 146 (182)
T ss_dssp TTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHH
T ss_pred hhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEechhhhcCcccccccccCCCCCHHHHH
Confidence 4567889999999999999999988887776 455444322 1478999999999985432 111111
Q ss_pred hhhCCCcccCcc-eEEEeeecccCCCHHHHHHHHHHHHH
Q 044598 68 DKLGLHSLRQRH-WYIQSTCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 68 ~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
... ...+ .+++++||++|.|++++++++.+.+.
T Consensus 147 ~~~-----~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 147 ELK-----KLIGAPAYIECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp HHH-----HHHTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred HHH-----HHcCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 110 1122 37899999999999999999998764
No 93
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.67 E-value=1.3e-16 Score=94.49 Aligned_cols=101 Identities=13% Similarity=0.110 Sum_probs=72.7
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCC-CCCCCeEEEEeeCCCCCCCC-CHHHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~ 78 (110)
++.++..+++++|++++|+|++++.++.....++..+.... ...+.|+++|+||+|+.+.. ..++..... ...
T Consensus 69 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~ 143 (199)
T 2gf0_A 69 FPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVA-----QEW 143 (199)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHH-----HHH
T ss_pred hHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHH-----HHh
Confidence 35678899999999999999999888776665554433211 12468999999999996532 222222211 122
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
+++++++||++|.|++++++++.+.+..
T Consensus 144 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 144 KCAFMETSAKMNYNVKELFQELLTLETR 171 (199)
T ss_dssp TCEEEECBTTTTBSHHHHHHHHHHHCSS
T ss_pred CCeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 3578999999999999999999987754
No 94
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.67 E-value=8.9e-17 Score=96.25 Aligned_cols=100 Identities=6% Similarity=0.016 Sum_probs=71.4
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHH-HHHHHHhcCCCCCCCeEEEEeeCCCCCCCC----------CHHHHHhh
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNAM----------NAAEITDK 69 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~----------~~~~~~~~ 69 (110)
|+.+|..+++++|++|+|+|++++.++.... .|+..+... ..+.|+++|+||+|+.+.. ..++....
T Consensus 70 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~ 147 (212)
T 2j0v_A 70 YSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRF--APNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEEL 147 (212)
T ss_dssp CCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHH
T ss_pred HHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHH
Confidence 4568889999999999999999988888775 455554332 1478999999999985431 12222111
Q ss_pred hCCCcccCcc-eEEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 70 LGLHSLRQRH-WYIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 70 ~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
. ...+ .+++++||++|.|++++++++.+.+...
T Consensus 148 ~-----~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 181 (212)
T 2j0v_A 148 R-----KQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 181 (212)
T ss_dssp H-----HHHTCSEEEECCTTTCTTHHHHHHHHHHHHHCC
T ss_pred H-----HHcCCceEEEccCCCCCCHHHHHHHHHHHHhhh
Confidence 1 1112 3789999999999999999999887643
No 95
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.67 E-value=5e-16 Score=92.80 Aligned_cols=105 Identities=12% Similarity=0.144 Sum_probs=71.2
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHH-HHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCc-----
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS----- 74 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~----- 74 (110)
++.++..+++++|++++|+|++++.++.... .|+..+... ..+.|+++|+||+|+.+.....+.........
T Consensus 86 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 163 (207)
T 2fv8_A 86 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHF--CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDD 163 (207)
T ss_dssp CTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHH
T ss_pred HHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHH
Confidence 3567888999999999999999988887773 444443322 24789999999999864321111000000000
Q ss_pred ----ccCcc-eEEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 75 ----LRQRH-WYIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 75 ----~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
....+ .+++++||++|.|++++++++.+.+.+.
T Consensus 164 ~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 164 GRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp HHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHSC
T ss_pred HHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 00112 2789999999999999999999987643
No 96
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.67 E-value=1.1e-16 Score=95.62 Aligned_cols=102 Identities=12% Similarity=0.079 Sum_probs=70.0
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHH-HHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCc-----
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS----- 74 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~----- 74 (110)
|+.++..+++++|++++|+|++++.++.... .|+..+... . .+.|+++|+||+|+.+.....+.........
T Consensus 91 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 168 (204)
T 4gzl_A 91 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH-C-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQ 168 (204)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-C-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHH
T ss_pred hHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-C-CCCCEEEEEechhhccchhhhhhhhccccccccHHH
Confidence 3567888999999999999999998888776 454444322 1 5799999999999865321111111000000
Q ss_pred ----cc-CcceEEEeeecccCCCHHHHHHHHHHHH
Q 044598 75 ----LR-QRHWYIQSTCATSGEGLYEGLDWLSNNI 104 (110)
Q Consensus 75 ----~~-~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 104 (110)
.. ....+++++||++|.|++++++++.+.+
T Consensus 169 ~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 169 GLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp HHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred HHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 00 1123689999999999999999998764
No 97
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.66 E-value=3.2e-16 Score=91.78 Aligned_cols=98 Identities=10% Similarity=0.031 Sum_probs=71.1
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHH-HHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--------------CHHHH
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNAM--------------NAAEI 66 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--------------~~~~~ 66 (110)
+.++..+++++|++++|+|++++.++.... .|+..+... ..+.|+++|+||+|+.+.. ..++.
T Consensus 67 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 144 (186)
T 1mh1_A 67 DRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQG 144 (186)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--STTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHH
T ss_pred HHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHh--CCCCCEEEEeEcccccccchhhhhhcccccccCCHHHH
Confidence 567888999999999999999988887776 455444332 1378999999999985431 11111
Q ss_pred HhhhCCCcccCcc-eEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 67 TDKLGLHSLRQRH-WYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 67 ~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
... ....+ .+++++||++|.|++++++++.+.+..
T Consensus 145 ~~~-----~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 145 LAM-----AKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp HHH-----HHHTTCSEEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred HHH-----HHhcCCcEEEEecCCCccCHHHHHHHHHHHHhc
Confidence 111 01122 388999999999999999999988754
No 98
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.66 E-value=2.3e-16 Score=92.62 Aligned_cols=99 Identities=9% Similarity=0.062 Sum_probs=71.3
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHH-HHHHHHHhcCCCCCCCeEEEEeeCCCCCCC--------------CCHHH
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEA-RDELHRMLNEDELRDAVLLVFANKQDLPNA--------------MNAAE 65 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~--------------~~~~~ 65 (110)
|+.++..+++++|++++|+|++++.++... ..|+..+... ..+.|+++|+||+|+.+. ...++
T Consensus 68 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 145 (184)
T 1m7b_A 68 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQ 145 (184)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHH
T ss_pred hhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHH
Confidence 356788899999999999999998888777 4455444322 247999999999998632 12222
Q ss_pred HHhhhCCCcccCc-ceEEEeeecc-cCCCHHHHHHHHHHHHHh
Q 044598 66 ITDKLGLHSLRQR-HWYIQSTCAT-SGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 66 ~~~~~~~~~~~~~-~~~~~~~Sa~-~~~~i~~l~~~l~~~~~~ 106 (110)
..... ... ..+++++||+ ++.|++++|+++.+.+.+
T Consensus 146 ~~~~~-----~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 146 GANMA-----KQIGAATYIECSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp HHHHH-----HHHTCSEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred HHHHH-----HHcCCcEEEEeeecCCCcCHHHHHHHHHHHHhc
Confidence 22111 011 2478999998 689999999999988764
No 99
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.66 E-value=3.1e-16 Score=92.46 Aligned_cols=96 Identities=14% Similarity=0.095 Sum_probs=72.0
Q ss_pred HHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCC--CCCCCeEEEEeeCCCCCCC--CCHHHHHhhhCCCcccCcceE
Q 044598 6 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNED--ELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWY 81 (110)
Q Consensus 6 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~ 81 (110)
..|++++|++++|+|.+++.++.....|+..+.... ...+.|+++|+||+|+.+. ...++..... ...+++
T Consensus 86 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~ 160 (187)
T 3c5c_A 86 ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALA-----GRFGCL 160 (187)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTCE
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHH-----HHcCCc
Confidence 568999999999999999988888877777665431 1147899999999998543 2333332221 122357
Q ss_pred EEeeec-ccCCCHHHHHHHHHHHHHh
Q 044598 82 IQSTCA-TSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 82 ~~~~Sa-~~~~~i~~l~~~l~~~~~~ 106 (110)
++++|| ++|.|++++|+++.+.+.+
T Consensus 161 ~~e~Sa~~~g~gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 161 FFEVSACLDFEHVQHVFHEAVREARR 186 (187)
T ss_dssp EEECCSSSCSHHHHHHHHHHHHHHHC
T ss_pred EEEEeecCccccHHHHHHHHHHHHhh
Confidence 899999 8999999999999988754
No 100
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.66 E-value=1.5e-16 Score=91.98 Aligned_cols=101 Identities=15% Similarity=0.143 Sum_probs=72.3
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcC-CCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccC
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNE-DELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQ 77 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~ 77 (110)
++.++..+++++|++++|+|++++.++.....++..+... ....+.|+++|+||+|+.+.. ...+..... ..
T Consensus 64 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~-----~~ 138 (172)
T 2erx_A 64 FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALA-----RT 138 (172)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHH-----HH
T ss_pred hHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHH-----HH
Confidence 3567888999999999999999988777666666554332 122478999999999985432 222222111 12
Q ss_pred cceEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 78 RHWYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 78 ~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
.+.+++++||++|.|++++++++.+.+.+
T Consensus 139 ~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 167 (172)
T 2erx_A 139 WKCAFMETSAKLNHNVKELFQELLNLEKR 167 (172)
T ss_dssp HTCEEEECBTTTTBSHHHHHHHHHHTCCS
T ss_pred hCCeEEEecCCCCcCHHHHHHHHHHHHhh
Confidence 24578999999999999999999987754
No 101
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.66 E-value=2.2e-16 Score=100.26 Aligned_cols=107 Identities=21% Similarity=0.380 Sum_probs=80.5
Q ss_pred CcchHHHhcccCCEEEEEEECC----------ChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCC-----------
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSN----------DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN----------- 59 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~----------- 59 (110)
||++|.+||++++++|+|+|.+ +.+++.++..++..+.......+.|+++++||+|+.+
T Consensus 180 ~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~ 259 (327)
T 3ohm_A 180 ERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDY 259 (327)
T ss_dssp HHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHHHHHHTTTSCGGGT
T ss_pred HHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchhhhhhhccchHhhh
Confidence 4789999999999999999654 5567888888999888776667899999999999832
Q ss_pred -------CCCHHHHHhh----h-CCCcccCcceEEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 60 -------AMNAAEITDK----L-GLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 60 -------~~~~~~~~~~----~-~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
..+.++.... + .......+++.+++|||+++.||+.+|..+.+.+.+.
T Consensus 260 fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~ 319 (327)
T 3ohm_A 260 FPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL 319 (327)
T ss_dssp CTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHT
T ss_pred chhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHH
Confidence 1122222222 1 1211224567888999999999999999999988643
No 102
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.65 E-value=2.2e-15 Score=90.25 Aligned_cols=100 Identities=23% Similarity=0.304 Sum_probs=66.1
Q ss_pred hHHHhcccCCEEEEEEECCChh-hHHHHHHHHHHHhcC--CCCCCCeEEEEeeCCCCCCCCCHHHHHhhh----C-----
Q 044598 4 LWRHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNE--DELRDAVLLVFANKQDLPNAMNAAEITDKL----G----- 71 (110)
Q Consensus 4 ~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~----~----- 71 (110)
++..|++++|++++|+|+++.. ++.....++...+.. ....+.|+++|+||+|+.+....+.....+ .
T Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~ 150 (214)
T 2fh5_B 71 LLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVT 150 (214)
T ss_dssp HHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhcc
Confidence 7888999999999999998743 344444555544322 112468999999999997654432221111 0
Q ss_pred ----------------C-C----ccc----CcceEEEeeecccC------CCHHHHHHHHHHH
Q 044598 72 ----------------L-H----SLR----QRHWYIQSTCATSG------EGLYEGLDWLSNN 103 (110)
Q Consensus 72 ----------------~-~----~~~----~~~~~~~~~Sa~~~------~~i~~l~~~l~~~ 103 (110)
. . .+. +...++++|||++| .|++++|++|.+.
T Consensus 151 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 151 RSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp CC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred chhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 0 0 000 11678999999999 9999999999875
No 103
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.64 E-value=8.7e-17 Score=103.21 Aligned_cols=106 Identities=16% Similarity=0.292 Sum_probs=77.3
Q ss_pred CcchHHHhcccCCEEEEEEECC----------ChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC----CC----
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSN----------DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----MN---- 62 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~----~~---- 62 (110)
||++|.+||++++++|+|+|.+ +..++.++..|+..+.......+.|+++|+||+|+... .+
T Consensus 196 ~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~k~~~v~l~~~ 275 (354)
T 2xtz_A 196 ERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLDVPLNVC 275 (354)
T ss_dssp GGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHTTTSCGGGS
T ss_pred hhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcchhhhhccccccccc
Confidence 5789999999999999999987 66788888889988876655568999999999997321 00
Q ss_pred ---------------HHHHHhhhCC-----------CcccCcceEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 63 ---------------AAEITDKLGL-----------HSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 63 ---------------~~~~~~~~~~-----------~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
.++....... .......+.+++|||++++||+++|.++.+.+..
T Consensus 276 ~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~~I~~ 345 (354)
T 2xtz_A 276 EWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLRR 345 (354)
T ss_dssp GGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHHHHHHH
Confidence 1111111000 0000234567899999999999999999887754
No 104
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.64 E-value=5.2e-16 Score=92.84 Aligned_cols=99 Identities=9% Similarity=0.062 Sum_probs=71.4
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHH-HHHHHHHhcCCCCCCCeEEEEeeCCCCCCC--------------CCHHH
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEA-RDELHRMLNEDELRDAVLLVFANKQDLPNA--------------MNAAE 65 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~--------------~~~~~ 65 (110)
|+.++..+++++|++|+|+|++++.++... ..|+..+... ..+.|+++|+||+|+.+. ...++
T Consensus 89 ~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 166 (205)
T 1gwn_A 89 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQ 166 (205)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHH
T ss_pred hhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEechhhccchhhhhhhcccccCCCCHHH
Confidence 356788899999999999999998888777 4555544332 247999999999998632 12222
Q ss_pred HHhhhCCCcccCc-ceEEEeeecc-cCCCHHHHHHHHHHHHHh
Q 044598 66 ITDKLGLHSLRQR-HWYIQSTCAT-SGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 66 ~~~~~~~~~~~~~-~~~~~~~Sa~-~~~~i~~l~~~l~~~~~~ 106 (110)
..... ... ..+++++||+ ++.|++++|+++.+.+.+
T Consensus 167 ~~~~~-----~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 167 GANMA-----KQIGAATYIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp HHHHH-----HHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----HHcCCCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 21111 011 2478999999 689999999999988765
No 105
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.64 E-value=2.3e-16 Score=99.37 Aligned_cols=96 Identities=18% Similarity=0.158 Sum_probs=68.8
Q ss_pred CcchHHHhcccCCEEEEEEECCChh-hHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRH 79 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 79 (110)
|+.+|+.|++++|++|+|+|++++. ++.....|+..+.. .++|+++|+||+|+.+....++....... ....
T Consensus 74 ~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~----~~~piilv~NK~DL~~~~~v~~~~~~~~~--~~~~- 146 (301)
T 1u0l_A 74 KNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK----NELETVMVINKMDLYDEDDLRKVRELEEI--YSGL- 146 (301)
T ss_dssp SCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHH--HTTT-
T ss_pred cceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----CCCCEEEEEeHHHcCCchhHHHHHHHHHH--Hhhh-
Confidence 5678999999999999999999876 56666667665432 47899999999999643211112211110 1112
Q ss_pred eEEEeeecccCCCHHHHHHHHHHH
Q 044598 80 WYIQSTCATSGEGLYEGLDWLSNN 103 (110)
Q Consensus 80 ~~~~~~Sa~~~~~i~~l~~~l~~~ 103 (110)
++++++||++|.|++++|..+...
T Consensus 147 ~~~~~~SAktg~gv~~lf~~l~ge 170 (301)
T 1u0l_A 147 YPIVKTSAKTGMGIEELKEYLKGK 170 (301)
T ss_dssp SCEEECCTTTCTTHHHHHHHHSSS
T ss_pred CcEEEEECCCCcCHHHHHHHhcCC
Confidence 578999999999999999887543
No 106
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.62 E-value=4.1e-16 Score=101.35 Aligned_cols=106 Identities=25% Similarity=0.344 Sum_probs=78.4
Q ss_pred CcchHHHhcccCCEEEEEEECCC----------hhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC-----C-C--
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSND----------RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----M-N-- 62 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~-----~-~-- 62 (110)
||++|.+||++++++|+|+|.++ ..++.++..|+..+.......+.|+++|+||+|+... . +
T Consensus 230 ~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~ki~~~~~~l~ 309 (402)
T 1azs_C 230 ERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIE 309 (402)
T ss_dssp GGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHHHHHHHHHCSSCGG
T ss_pred hhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhhhhhhhcccccchh
Confidence 57899999999999999999998 7789999999998877655568999999999997321 0 0
Q ss_pred ------------------------HHHHHhh----h-CC---CcccCcceEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 63 ------------------------AAEITDK----L-GL---HSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 63 ------------------------~~~~~~~----~-~~---~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
.++.... + .. .......+.+++|||+++.||+++|.++.+.+..
T Consensus 310 ~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~v~~~I~~ 385 (402)
T 1azs_C 310 DYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQR 385 (402)
T ss_dssp GTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred hccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHHHHHHHHHHH
Confidence 1111111 0 00 0001135678899999999999999998887754
No 107
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.62 E-value=8.2e-16 Score=91.19 Aligned_cols=96 Identities=20% Similarity=0.283 Sum_probs=66.1
Q ss_pred HHhcccCCEEEEEEECCCh--hhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCC----HHHHH----hhhCCCcc
Q 044598 6 RHYFQNTQGLIFVVDSNDR--DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----AAEIT----DKLGLHSL 75 (110)
Q Consensus 6 ~~~~~~~~~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~----~~~~~----~~~~~~~~ 75 (110)
..|++++|++|+|+|+++. +++.....|+...... ..+.|+++|+||+|+.+... ...+. ..+.....
T Consensus 90 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~ 167 (196)
T 3llu_A 90 EMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV--NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGL 167 (196)
T ss_dssp HHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc--CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhh
Confidence 7899999999999999985 4555555666654322 25799999999999854210 11111 11110001
Q ss_pred cCcceEEEeeecccCCCHHHHHHHHHHHH
Q 044598 76 RQRHWYIQSTCATSGEGLYEGLDWLSNNI 104 (110)
Q Consensus 76 ~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 104 (110)
...+.+++++||++ .|++++|+.+.+.+
T Consensus 168 ~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 168 EKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp TTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred hcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 14567899999999 99999999998865
No 108
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.58 E-value=2e-15 Score=96.29 Aligned_cols=106 Identities=24% Similarity=0.329 Sum_probs=79.0
Q ss_pred CcchHHHhcccCCEEEEEEECC----------ChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC----------
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSN----------DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA---------- 60 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~---------- 60 (110)
||++|.+||++++++|+|+|.+ +..++.++..|+..+.......+.|+++++||+|+...
T Consensus 174 ~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~DL~~eki~~~~l~~~ 253 (340)
T 4fid_A 174 ERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDLFEEKLTKVPLNTI 253 (340)
T ss_dssp HHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHHHHHHHHHSCGGGT
T ss_pred ccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECchhhhhhcCcchHHHh
Confidence 4789999999999999999998 56778888889988887766678999999999998321
Q ss_pred -------CCHHHHH----hhh-------CCCcccC-----------cceEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 61 -------MNAAEIT----DKL-------GLHSLRQ-----------RHWYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 61 -------~~~~~~~----~~~-------~~~~~~~-----------~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
.+.++.. ..+ .+..... +.+.++++||+++.|+..+|..+.+.+..
T Consensus 254 fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 254 FPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp CTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred hhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHHHHHHHHHHH
Confidence 1122221 111 1100111 45788999999999999999999888754
No 109
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.58 E-value=1.1e-14 Score=92.17 Aligned_cols=98 Identities=10% Similarity=0.037 Sum_probs=70.5
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHH-HHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--------------CHHHH
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNAM--------------NAAEI 66 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--------------~~~~~ 66 (110)
+.++..+++++|++++|+|++++.++.... .|+..+.... .+.|+++|+||+|+.+.. ..++.
T Consensus 217 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 294 (332)
T 2wkq_A 217 DRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQG 294 (332)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHH
T ss_pred hHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhC--CCCcEEEEEEchhcccccchhhhccccccccccHHHH
Confidence 467888999999999999999988887765 3444443221 379999999999985431 11111
Q ss_pred HhhhCCCcccCcc-eEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 67 TDKLGLHSLRQRH-WYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 67 ~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
.... ...+ .+++++||++|.|++++++++.+.+..
T Consensus 295 ~~~~-----~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 295 LAMA-----KEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp HHHH-----HHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred HHHH-----HHcCCcEEEEecCCCCcCHHHHHHHHHHHHhc
Confidence 1110 1122 378999999999999999999988754
No 110
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.36 E-value=1.4e-16 Score=94.90 Aligned_cols=102 Identities=14% Similarity=0.108 Sum_probs=68.4
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHH-HHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHH---------HHHhhh
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNAMNAA---------EITDKL 70 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~---------~~~~~~ 70 (110)
|+.++..+++++|++++|+|++++.++.... .|+..+... ..+.|+++|+||+|+.+..... .+....
T Consensus 91 ~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~ 168 (204)
T 3th5_A 91 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQ 168 (204)
Confidence 3467788999999999999999888777765 444433221 1378999999999996432110 000000
Q ss_pred CCCcccCcce-EEEeeecccCCCHHHHHHHHHHHH
Q 044598 71 GLHSLRQRHW-YIQSTCATSGEGLYEGLDWLSNNI 104 (110)
Q Consensus 71 ~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~~ 104 (110)
........+. +++++||++|.|++++++++.+.+
T Consensus 169 ~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 169 GLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 0000112233 788999999999999999998764
No 111
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.57 E-value=2.9e-14 Score=82.87 Aligned_cols=100 Identities=19% Similarity=0.152 Sum_probs=66.7
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCc-cc-C-
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS-LR-Q- 77 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~-~~-~- 77 (110)
|+.++..+++.+|++++|+|++++.... ....+.... . .+.|+++|+||+|+.+. ..+++...+.... .. .
T Consensus 68 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~-~~~~l~~~~-~---~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~ 141 (178)
T 2lkc_A 68 FTTMRARGAQVTDIVILVVAADDGVMPQ-TVEAINHAK-A---ANVPIIVAINKMDKPEA-NPDRVMQELMEYNLVPEEW 141 (178)
T ss_dssp SSCSCCSSCCCCCEEEEEEETTCCCCHH-HHHHHHHHG-G---GSCCEEEEEETTTSSCS-CHHHHHHHHTTTTCCBTTT
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHH-h---CCCCEEEEEECccCCcC-CHHHHHHHHHhcCcChhHc
Confidence 3456777899999999999988732221 222333322 1 46899999999999764 2233333222111 11 1
Q ss_pred -cceEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 78 -RHWYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 78 -~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
...+++++||++|.|++++++++.+.+..
T Consensus 142 ~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 171 (178)
T 2lkc_A 142 GGDTIFCKLSAKTKEGLDHLLEMILLVSEM 171 (178)
T ss_dssp TSSEEEEECCSSSSHHHHHHHHHHHHHHHH
T ss_pred CCcccEEEEecCCCCCHHHHHHHHHHhhhh
Confidence 23689999999999999999999988754
No 112
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.56 E-value=1.5e-15 Score=89.20 Aligned_cols=104 Identities=13% Similarity=0.049 Sum_probs=71.1
Q ss_pred cchHHHhcccCCEEEEEEECCCh-hhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHH----HHHhhhCCCccc
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDR-DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA----EITDKLGLHSLR 76 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~----~~~~~~~~~~~~ 76 (110)
+.+++.|+++++++++|+|.+++ .++.....|+..+.... .+.|+++|+||+|+.+..... +....+....-.
T Consensus 70 ~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 147 (184)
T 2zej_A 70 YSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA--SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGF 147 (184)
T ss_dssp HTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC--TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTS
T ss_pred HHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC--CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCC
Confidence 45778899999999999999876 46777777777664331 478999999999986432111 111222110000
Q ss_pred CcceEEEeeecccCC-CHHHHHHHHHHHHHhh
Q 044598 77 QRHWYIQSTCATSGE-GLYEGLDWLSNNIANK 107 (110)
Q Consensus 77 ~~~~~~~~~Sa~~~~-~i~~l~~~l~~~~~~~ 107 (110)
....+++++||+++. |++++++.+.+.+.+.
T Consensus 148 ~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~ 179 (184)
T 2zej_A 148 PAIRDYHFVNATEESDALAKLRKTIINESLNF 179 (184)
T ss_dssp CEEEEEEECCTTSCCHHHHHHHHHHHHHHHCC
T ss_pred cchhheEEEecccCchhHHHHHHHHHHHHhcc
Confidence 112248899999997 9999999998887653
No 113
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.56 E-value=6.6e-15 Score=86.88 Aligned_cols=95 Identities=13% Similarity=0.126 Sum_probs=65.9
Q ss_pred cchHHHhcccC---CEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCH----HHHHhhhCCCc
Q 044598 2 RPLWRHYFQNT---QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AEITDKLGLHS 74 (110)
Q Consensus 2 ~~~~~~~~~~~---~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~----~~~~~~~~~~~ 74 (110)
+.++..|++.+ |++++|+|+++..+.... .+...+.. .+.|+++|+||+|+.+.... +++.+.+..
T Consensus 93 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~--~~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~-- 165 (195)
T 1svi_A 93 GRMIETYITTREELKAVVQIVDLRHAPSNDDV--QMYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNI-- 165 (195)
T ss_dssp HHHHHHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHhhhhcCCEEEEEEECCCCCCHHHH--HHHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcc--
Confidence 34577888877 999999999876554432 12222222 46899999999999654322 222222321
Q ss_pred ccCcceEEEeeecccCCCHHHHHHHHHHHHH
Q 044598 75 LRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 75 ~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
....+++++||++|.|++++++++.+.+.
T Consensus 166 --~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 166 --DPEDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp --CTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred --cCCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence 23568999999999999999999988764
No 114
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.54 E-value=4.4e-15 Score=87.46 Aligned_cols=98 Identities=19% Similarity=0.248 Sum_probs=62.4
Q ss_pred chHHHhcccC---CEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCccc-Cc
Q 044598 3 PLWRHYFQNT---QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR-QR 78 (110)
Q Consensus 3 ~~~~~~~~~~---~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~ 78 (110)
.++..|++.+ +++++|+|+++....... .+...+.. .+.|+++|+||+|+.+....+...+.... ... ..
T Consensus 93 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~--~~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~-~~~~~~ 166 (195)
T 3pqc_A 93 RLVEDYFKNRWSLQMVFLLVDGRIPPQDSDL--MMVEWMKS---LNIPFTIVLTKMDKVKMSERAKKLEEHRK-VFSKYG 166 (195)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHH-HHHSSC
T ss_pred HHHHHHHhcCcCceEEEEEecCCCCCCHHHH--HHHHHHHH---cCCCEEEEEEChhcCChHHHHHHHHHHHH-HHhhcC
Confidence 4567777776 999999998764332211 12222222 36899999999998654322222111100 011 13
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
.++++++||++|.|++++++++.+.+.+
T Consensus 167 ~~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 167 EYTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp CSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 3578999999999999999999988754
No 115
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.53 E-value=3.2e-14 Score=86.20 Aligned_cols=96 Identities=14% Similarity=0.095 Sum_probs=63.5
Q ss_pred HHhcccCCEEEEEEECCChhhHH--HHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCC--HH---HHHhhhCCCcccCc
Q 044598 6 RHYFQNTQGLIFVVDSNDRDRVV--EARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AA---EITDKLGLHSLRQR 78 (110)
Q Consensus 6 ~~~~~~~~~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~--~~---~~~~~~~~~~~~~~ 78 (110)
..++..+|++|+|+|++++.++. ....++..+... ..+.|+++|+||+|+.+... .+ ....... ....
T Consensus 103 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~~~ 177 (228)
T 2qu8_A 103 TALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILD---NVKN 177 (228)
T ss_dssp HHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHH---HCCS
T ss_pred HHhhccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHH---hcCC
Confidence 45678899999999999875543 223444444322 24789999999999965422 11 1111110 0111
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
..+++++||++|.|++++++++.+.+.+
T Consensus 178 ~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 178 PIKFSSFSTLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp CEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CceEEEEecccCCCHHHHHHHHHHHHHH
Confidence 2689999999999999999999988754
No 116
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.51 E-value=1.2e-14 Score=83.26 Aligned_cols=89 Identities=16% Similarity=0.154 Sum_probs=61.2
Q ss_pred chHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcce-E
Q 044598 3 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW-Y 81 (110)
Q Consensus 3 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~ 81 (110)
..+..+++.+|++++|+|.++..+.. ..++...+.. .+.|+++|+||+|+.+.. ++..+. ...+. +
T Consensus 71 ~~~~~~~~~~~~~i~v~d~~~~~~~~--~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~--~~~~~~------~~~~~~~ 137 (161)
T 2dyk_A 71 EKVDRALEDAEVVLFAVDGRAELTQA--DYEVAEYLRR---KGKPVILVATKVDDPKHE--LYLGPL------YGLGFGD 137 (161)
T ss_dssp HHHHHHTTTCSEEEEEEESSSCCCHH--HHHHHHHHHH---HTCCEEEEEECCCSGGGG--GGCGGG------GGGSSCS
T ss_pred HHHHHHHHhCCEEEEEEECCCcccHh--HHHHHHHHHh---cCCCEEEEEECcccccch--HhHHHH------HhCCCCC
Confidence 35677899999999999998743221 2233333332 468999999999986431 111111 11222 5
Q ss_pred EEeeecccCCCHHHHHHHHHHHH
Q 044598 82 IQSTCATSGEGLYEGLDWLSNNI 104 (110)
Q Consensus 82 ~~~~Sa~~~~~i~~l~~~l~~~~ 104 (110)
++++||++|.|++++++++.+.+
T Consensus 138 ~~~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 138 PIPTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp CEECBTTTTBSHHHHHHHHHHHC
T ss_pred eEEEecccCCChHHHHHHHHHhC
Confidence 78999999999999999998865
No 117
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.50 E-value=1.6e-14 Score=84.12 Aligned_cols=87 Identities=16% Similarity=0.190 Sum_probs=61.1
Q ss_pred HhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEEeee
Q 044598 7 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTC 86 (110)
Q Consensus 7 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 86 (110)
.+++++|++++|+|+++..++.. ..|+..+.... ..+.|+++|+||+|+.+... . .......+++++|
T Consensus 79 ~~~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~~~~-----~-----~~~~~~~~~~~~S 146 (172)
T 2gj8_A 79 QEIEQADRVLFMVDGTTTDAVDP-AEIWPEFIARL-PAKLPITVVRNKADITGETL-----G-----MSEVNGHALIRLS 146 (172)
T ss_dssp HHHHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHS-CTTCCEEEEEECHHHHCCCC-----E-----EEEETTEEEEECC
T ss_pred HHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhc-ccCCCEEEEEECccCCcchh-----h-----hhhccCCceEEEe
Confidence 46899999999999987665432 24444443221 24689999999999843210 0 0112345789999
Q ss_pred cccCCCHHHHHHHHHHHHH
Q 044598 87 ATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 87 a~~~~~i~~l~~~l~~~~~ 105 (110)
|++|.|++++++++.+.+.
T Consensus 147 A~~g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 147 ARTGEGVDVLRNHLKQSMG 165 (172)
T ss_dssp TTTCTTHHHHHHHHHHHC-
T ss_pred CCCCCCHHHHHHHHHHHhh
Confidence 9999999999999988764
No 118
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.48 E-value=8.2e-14 Score=88.44 Aligned_cols=100 Identities=17% Similarity=0.201 Sum_probs=64.6
Q ss_pred hHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcC--CCCCCCeEEEEeeCCCCCCCCC----HHHHHhhh--CCCcc
Q 044598 4 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNE--DELRDAVLLVFANKQDLPNAMN----AAEITDKL--GLHSL 75 (110)
Q Consensus 4 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~iiv~nK~Dl~~~~~----~~~~~~~~--~~~~~ 75 (110)
+++.||++++++|+|+|.+++ +.+...++..++.. ...++.|+++++||+|+..... .+++.... .+...
T Consensus 65 ~~~~yyr~a~~~IlV~Ditd~--~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~ 142 (331)
T 3r7w_B 65 DSERLFKSVGALVYVIDSQDE--YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLEL 142 (331)
T ss_dssp HHHHHHTTCSEEEEECCCSSC--TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSS
T ss_pred hhhhhccCCCEEEEEEECCch--HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhh
Confidence 368999999999999999986 32333333332211 1125799999999999965321 12222211 11111
Q ss_pred --cCcceEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 76 --RQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 76 --~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
...++.+++|||++ .++.+.|..+.+.+..
T Consensus 143 ~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 143 GLDGVQVSFYLTSIFD-HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp SCSCCCEEEECCCSSS-SHHHHHHHHHHTTSST
T ss_pred cccccCceEEEeccCC-CcHHHHHHHHHHHHHh
Confidence 12467999999998 5899999988876643
No 119
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.48 E-value=4.9e-14 Score=88.84 Aligned_cols=92 Identities=21% Similarity=0.171 Sum_probs=65.7
Q ss_pred cchHHHhcccCCEEEEEEECCChh-hHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCC---HHHHHhhhCCCcccC
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSLRQ 77 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~---~~~~~~~~~~~~~~~ 77 (110)
+.+.+.+++++|++++|+|++++. ++.....|+..+.. .++|.++|+||+|+.+... .++.... +..
T Consensus 70 ~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~-----~~~ 140 (302)
T 2yv5_A 70 NLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWISI-----YRD 140 (302)
T ss_dssp CEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHH-----HHH
T ss_pred HHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHHH-----HHH
Confidence 446677999999999999999875 66666666654322 4799999999999864321 1111111 112
Q ss_pred cceEEEeeecccCCCHHHHHHHHHH
Q 044598 78 RHWYIQSTCATSGEGLYEGLDWLSN 102 (110)
Q Consensus 78 ~~~~~~~~Sa~~~~~i~~l~~~l~~ 102 (110)
.+.+++++||++|.|+++++..+..
T Consensus 141 ~g~~~~~~SA~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 141 AGYDVLKVSAKTGEGIDELVDYLEG 165 (302)
T ss_dssp TTCEEEECCTTTCTTHHHHHHHTTT
T ss_pred CCCeEEEEECCCCCCHHHHHhhccC
Confidence 2457899999999999999987654
No 120
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.47 E-value=1.8e-14 Score=86.68 Aligned_cols=100 Identities=13% Similarity=0.114 Sum_probs=62.7
Q ss_pred chHHHhccc---CCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHH----HHhhhCCC--
Q 044598 3 PLWRHYFQN---TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE----ITDKLGLH-- 73 (110)
Q Consensus 3 ~~~~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~----~~~~~~~~-- 73 (110)
.++..|++. +|++++|+|+++..+. ....+...+.. .+.|+++|+||+|+.+...... +...+...
T Consensus 104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~--~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~ 178 (223)
T 4dhe_A 104 QLLSSYLQTRPQLCGMILMMDARRPLTE--LDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRD 178 (223)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCH--HHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcCcCEEEEEEeCCCCCCH--HHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhh
Confidence 355667776 7789999999864221 12223333332 4689999999999865322111 11111100
Q ss_pred cccCcceEEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 74 SLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 74 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
.......+++++||++|.|+++++++|.+.+...
T Consensus 179 ~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 179 AGYAGKLTVQLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp HTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred cccCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence 0002456899999999999999999999887643
No 121
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.47 E-value=1.2e-12 Score=77.69 Aligned_cols=99 Identities=16% Similarity=0.205 Sum_probs=72.1
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCcc
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRH 79 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~ 79 (110)
+.++..++++++++++|+|.++..++.....|+..+... ...+.|+++++||+|+.+.. ..++..... ...+
T Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~-----~~~~ 141 (199)
T 2f9l_A 68 RRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFA-----EKNN 141 (199)
T ss_dssp TCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTT
T ss_pred hhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccCcCHHHHHHHH-----HHcC
Confidence 457788999999999999999887777666666554322 12468999999999985432 223322221 1234
Q ss_pred eEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 80 WYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 80 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
+.++++||+++.|++++++++.+.+.+
T Consensus 142 ~~~~d~Sal~~~~i~~l~~~l~~~~~~ 168 (199)
T 2f9l_A 142 LSFIETSALDSTNVEEAFKNILTEIYR 168 (199)
T ss_dssp CEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 578899999999999999999988754
No 122
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.47 E-value=7.4e-14 Score=88.22 Aligned_cols=98 Identities=15% Similarity=0.154 Sum_probs=67.5
Q ss_pred chHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCC-CCCCHHHHHhhhCCCcccCcceE
Q 044598 3 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP-NAMNAAEITDKLGLHSLRQRHWY 81 (110)
Q Consensus 3 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~ 81 (110)
..+..+++++|++++|+|+++..+..+...|+..+ .. .+.|+++|+||+|+. +.....+....+.. ......+
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l-~~---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~--~~~~~~~ 157 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFI-KP---LNKPVIVVINKIDKIGPAKNVLPLIDEIHK--KHPELTE 157 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHT-GG---GCCCEEEEEECGGGSSSGGGGHHHHHHHHH--HCTTCCC
T ss_pred HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHH-Hh---cCCCEEEEEECccCCCCHHHHHHHHHHHHH--hccCCCe
Confidence 45678899999999999999765655544444443 22 468999999999986 32222221111110 0112346
Q ss_pred EEeeecccCCCHHHHHHHHHHHHHh
Q 044598 82 IQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 82 ~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
++++||++|.|++++++++.+.+..
T Consensus 158 i~~vSA~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 158 IVPISALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHSCB
T ss_pred EEEEeCCCCCCHHHHHHHHHHhCcc
Confidence 8899999999999999999988754
No 123
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.46 E-value=1.6e-14 Score=84.82 Aligned_cols=63 Identities=16% Similarity=0.117 Sum_probs=43.9
Q ss_pred CCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCcceEEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 44 RDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 44 ~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
.+.|+++|+||+|+.+.. ..+++...++.. ......+++++||++|.|++++++++.+.+...
T Consensus 121 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 185 (190)
T 2cxx_A 121 LDIPTIVAVNKLDKIKNVQEVINFLAEKFEVP-LSEIDKVFIPISAKFGDNIERLKNRIFEVIRER 185 (190)
T ss_dssp TTCCEEEEEECGGGCSCHHHHHHHHHHHHTCC-GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred cCCceEEEeehHhccCcHHHHHHHHHHHhhhh-hhccCCcEEEEecCCCCCHHHHHHHHHHhcchh
Confidence 478999999999997543 112233333331 111123578999999999999999999988654
No 124
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.45 E-value=2.7e-13 Score=78.28 Aligned_cols=86 Identities=20% Similarity=0.220 Sum_probs=60.6
Q ss_pred hHHHhcc--cCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC----CHHHHHhhhCCCcccC
Q 044598 4 LWRHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSLRQ 77 (110)
Q Consensus 4 ~~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~----~~~~~~~~~~~~~~~~ 77 (110)
+...|++ +++++++|+|+++.+.. ..|+..+.. .+.|+++|+||+|+.... ..+.+...+
T Consensus 72 ~~~~~~~~~~~~~~i~v~D~~~~~~~---~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~------- 137 (165)
T 2wji_A 72 IARDYIINEKPDLVVNIVDATALERN---LYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKIL------- 137 (165)
T ss_dssp HHHHHHHHHCCSEEEEEEETTCHHHH---HHHHHHHHH----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHH-------
T ss_pred HHHHHHhcCCCCEEEEEecCCchhHh---HHHHHHHHh----cCCCEEEEEEchHhccccChhhHHHHHHHHh-------
Confidence 4566775 89999999999875432 334444432 368999999999974221 122222222
Q ss_pred cceEEEeeecccCCCHHHHHHHHHHHH
Q 044598 78 RHWYIQSTCATSGEGLYEGLDWLSNNI 104 (110)
Q Consensus 78 ~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 104 (110)
+.+++++||++|+|++++|+++.+.+
T Consensus 138 -~~~~~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 138 -GVKVVPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp -TSCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred -CCCEEEEEcCCCCCHHHHHHHHHHHh
Confidence 24688999999999999999998875
No 125
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.45 E-value=1.7e-13 Score=87.66 Aligned_cols=98 Identities=23% Similarity=0.334 Sum_probs=67.9
Q ss_pred hHHHhcc---cCCEEEEEEECCC---hhhHHHHHHHHHHHhcCC-CCCCCeEEEEeeCCCCCCCCC-HHHHHhhhCCCcc
Q 044598 4 LWRHYFQ---NTQGLIFVVDSND---RDRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSL 75 (110)
Q Consensus 4 ~~~~~~~---~~~~~i~v~d~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~iiv~nK~Dl~~~~~-~~~~~~~~~~~~~ 75 (110)
++..|++ +++++|+|+|+++ ..++.+...+..++.... ...++|+++|+||+|+..... .+++...+.
T Consensus 226 l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~---- 301 (342)
T 1lnz_A 226 LGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLT---- 301 (342)
T ss_dssp THHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCC----
T ss_pred hHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhh----
Confidence 4455544 5999999999987 556766666666554332 235799999999999864321 112222221
Q ss_pred cCcceEEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 76 RQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 76 ~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
...+++++||++++|+++++.+|.+.+...
T Consensus 302 --~~~~v~~iSA~tg~gi~eL~~~l~~~l~~~ 331 (342)
T 1lnz_A 302 --DDYPVFPISAVTREGLRELLFEVANQLENT 331 (342)
T ss_dssp --SCCCBCCCSSCCSSTTHHHHHHHHHHHTSC
T ss_pred --cCCCEEEEECCCCcCHHHHHHHHHHHHhhC
Confidence 114678999999999999999999988643
No 126
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.41 E-value=7.3e-13 Score=89.08 Aligned_cols=96 Identities=11% Similarity=0.185 Sum_probs=63.8
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCc
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQR 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~ 78 (110)
|+.++..+++++|++|+|+|+++.+.. ..|+..+.... .+.|+++|+||+|+.+.. ..+++.... ...
T Consensus 111 ~~~~~~~~l~~~d~ii~V~D~s~~~~~---~~~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~~~~~-----~~~ 180 (535)
T 3dpu_A 111 MHASHQFFMTRSSVYMLLLDSRTDSNK---HYWLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQKKINERF-----PAI 180 (535)
T ss_dssp TTTTCHHHHHSSEEEEEEECGGGGGGH---HHHHHHHHHHS--SSCCEEEEECCTTTCTTCCCCHHHHHHHC-----GGG
T ss_pred HHHHHHHHccCCcEEEEEEeCCCchhH---HHHHHHHHHhC--CCCCEEEEEECCCcccccccCHHHHHHHH-----Hhc
Confidence 356778899999999999999865444 33444443321 368999999999996543 333333332 123
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
+.+++++||++|.|+++++.++.+.+..
T Consensus 181 ~~~~~~vSA~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 181 ENRFHRISCKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp TTCEEECCC-----CTTHHHHHHHHHTC
T ss_pred CCceEEEecCcccCHHHHHHHHHHHHhc
Confidence 3468999999999999999999988754
No 127
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.39 E-value=4.5e-12 Score=84.36 Aligned_cols=88 Identities=23% Similarity=0.284 Sum_probs=64.0
Q ss_pred HHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEEe
Q 044598 5 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQS 84 (110)
Q Consensus 5 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (110)
...++++||++|+|+|++++.+..+. ..+ +.+ .++|+++|+||+|+.+....+++..... ...++++
T Consensus 317 ~~~~~~~aD~vl~VvD~s~~~s~~~~-~il-~~l-----~~~piivV~NK~DL~~~~~~~~~~~~~~------~~~~~i~ 383 (482)
T 1xzp_A 317 TLQEIEKADIVLFVLDASSPLDEEDR-KIL-ERI-----KNKRYLVVINKVDVVEKINEEEIKNKLG------TDRHMVK 383 (482)
T ss_dssp HHHHHHHCSEEEEEEETTSCCCHHHH-HHH-HHH-----TTSSEEEEEEECSSCCCCCHHHHHHHHT------CSTTEEE
T ss_pred HHHHhhcccEEEEEecCCCCCCHHHH-HHH-HHh-----cCCCEEEEEECcccccccCHHHHHHHhc------CCCcEEE
Confidence 35689999999999999876555442 222 222 3689999999999976544444443321 2235789
Q ss_pred eecccCCCHHHHHHHHHHHHH
Q 044598 85 TCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 85 ~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
+||++|+|+++++++|.+.+.
T Consensus 384 iSAktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 384 ISALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp EEGGGTCCHHHHHHHHHHHTH
T ss_pred EECCCCCCHHHHHHHHHHHHh
Confidence 999999999999999998764
No 128
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.38 E-value=5.7e-12 Score=74.41 Aligned_cols=97 Identities=15% Similarity=0.200 Sum_probs=69.7
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC--CHHHHHhhhCCCcccCcc
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRH 79 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~ 79 (110)
+.++..+++.++++++|+|.++..+++....|+..+.... ..+.|+++++||+|+.+.. ..++..... ....
T Consensus 92 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~-----~~~~ 165 (191)
T 1oix_A 92 RAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTDEARAFA-----EKNG 165 (191)
T ss_dssp SCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTT
T ss_pred hhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHH-----HHcC
Confidence 4577888999999999999998877766655665443221 2468999999999986422 222222221 1234
Q ss_pred eEEEeeecccCCCHHHHHHHHHHHH
Q 044598 80 WYIQSTCATSGEGLYEGLDWLSNNI 104 (110)
Q Consensus 80 ~~~~~~Sa~~~~~i~~l~~~l~~~~ 104 (110)
+.++++||+++.|++++++++.+.+
T Consensus 166 ~~~ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 166 LSFIETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 5788999999999999999998765
No 129
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.38 E-value=4.2e-13 Score=88.71 Aligned_cols=96 Identities=13% Similarity=0.073 Sum_probs=62.7
Q ss_pred HhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCC--HHHHHhhhCCCcccCcceEEEe
Q 044598 7 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQS 84 (110)
Q Consensus 7 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 84 (110)
.++++||++++|+|+++.-. ....++...+.. .++|+++|+||+|+.+... .+++.+............++++
T Consensus 273 ~~~~~ad~~llviD~~~~~~--~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (456)
T 4dcu_A 273 KAIDRSEVVAVVLDGEEGII--EQDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF 347 (456)
T ss_dssp HHHHHCSEEEEEEETTTCCC--HHHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHhhCCEEEEEEeCCCCcC--HHHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEE
Confidence 47899999999999986422 222233333322 4699999999999975432 2222222110000112357899
Q ss_pred eecccCCCHHHHHHHHHHHHHhh
Q 044598 85 TCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 85 ~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
+||++|.|++++++++.+.+.+.
T Consensus 348 ~SA~~g~gv~~l~~~i~~~~~~~ 370 (456)
T 4dcu_A 348 MSALTKKRIHTLMPAIIKASENH 370 (456)
T ss_dssp CCTTTCTTGGGHHHHHHHHHHHH
T ss_pred EcCCCCcCHHHHHHHHHHHHHHh
Confidence 99999999999999999877543
No 130
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.37 E-value=5.1e-13 Score=84.20 Aligned_cols=94 Identities=15% Similarity=0.058 Sum_probs=64.0
Q ss_pred chHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCC-HHHHHhhhCCCcccCcceE
Q 044598 3 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWY 81 (110)
Q Consensus 3 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~ 81 (110)
.....+++++|++++|+|+++..+.. ..++.+.+... ..+.|+++|+||+|+.+... ..+....+ ....+
T Consensus 78 ~~~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~------~~~~~ 148 (301)
T 1wf3_A 78 QEVYEALADVNAVVWVVDLRHPPTPE--DELVARALKPL-VGKVPILLVGNKLDAAKYPEEAMKAYHEL------LPEAE 148 (301)
T ss_dssp HHHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGG-TTTSCEEEEEECGGGCSSHHHHHHHHHHT------STTSE
T ss_pred HHHHHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhh-cCCCCEEEEEECcccCCchHHHHHHHHHh------cCcCc
Confidence 34567899999999999998653332 33444434331 13689999999999865322 11112221 12246
Q ss_pred EEeeecccCCCHHHHHHHHHHHHH
Q 044598 82 IQSTCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 82 ~~~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
++++||++|.|++++++++.+.+.
T Consensus 149 ~~~iSA~~g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 149 PRMLSALDERQVAELKADLLALMP 172 (301)
T ss_dssp EEECCTTCHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCCCCHHHHHHHHHHhcc
Confidence 889999999999999999988764
No 131
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.36 E-value=8.8e-13 Score=86.00 Aligned_cols=99 Identities=15% Similarity=0.038 Sum_probs=66.3
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCH----HHHHhhhCCCcccC
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AEITDKLGLHSLRQ 77 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~----~~~~~~~~~~~~~~ 77 (110)
...+..++..+|++|+|+|+++..+..+...++..+... ..+|+++|+||+|+.+.... +++.+.+.. ...
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~--~~~ 163 (403)
T 3sjy_A 89 MATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG--TWA 163 (403)
T ss_dssp HHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT--STT
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHHHHHHHHHHh--hCC
Confidence 345667889999999999998754344444444333211 23689999999998653211 122222211 122
Q ss_pred cceEEEeeecccCCCHHHHHHHHHHHHH
Q 044598 78 RHWYIQSTCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 78 ~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
...+++++||++|.|+++++++|.+.+.
T Consensus 164 ~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 164 ENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp TTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred CCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 3568999999999999999999998664
No 132
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.36 E-value=1.2e-12 Score=82.73 Aligned_cols=98 Identities=19% Similarity=0.178 Sum_probs=66.5
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHH---HHHHhcCCCCCCCeEEEEeeCCCCCCCCCH--------HHHHhhh
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDE---LHRMLNEDELRDAVLLVFANKQDLPNAMNA--------AEITDKL 70 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~--------~~~~~~~ 70 (110)
+.++..+++++|++|+|+|++++.++.....| +..+... .++.|+++|+||+|+.+.... +++....
T Consensus 71 ~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~--~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~ 148 (307)
T 3r7w_A 71 TKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKY--SPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETS 148 (307)
T ss_dssp TTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHh--CCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHH
Confidence 46788999999999999999998877766544 3333221 257999999999998652111 1111111
Q ss_pred CCCcccCcceEEEeeecccCCCHHHHHHHHHHHH
Q 044598 71 GLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 104 (110)
Q Consensus 71 ~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 104 (110)
.. ......+++++||++ .|+.+.+..+.+.+
T Consensus 149 ~~--~g~~~~~~~~tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 149 SE--FGFPNLIGFPTSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp HT--TTCCSCEEEECCTTS-SHHHHHHHHHHHTT
T ss_pred HH--cCCCCeEEEEeeecC-ChHHHHHHHHHHHH
Confidence 00 000136899999999 88999988887654
No 133
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.36 E-value=2.1e-12 Score=83.01 Aligned_cols=93 Identities=15% Similarity=0.160 Sum_probs=63.9
Q ss_pred HhcccCCEEEEEEECCChh--hHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEEe
Q 044598 7 HYFQNTQGLIFVVDSNDRD--RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQS 84 (110)
Q Consensus 7 ~~~~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (110)
.+...+|++++|+|++++. ++.....++..+.... .+.|+++|+||+|+......++..... .....++++
T Consensus 242 ~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~--~~~piilV~NK~Dl~~~~~~~~~~~~~-----~~~~~~~~~ 314 (357)
T 2e87_A 242 ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF--KDLPFLVVINKIDVADEENIKRLEKFV-----KEKGLNPIK 314 (357)
T ss_dssp GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT--TTSCEEEEECCTTTCCHHHHHHHHHHH-----HHTTCCCEE
T ss_pred HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc--CCCCEEEEEECcccCChHHHHHHHHHH-----HhcCCCeEE
Confidence 3455799999999987654 4555555665554321 278999999999986432222222211 112346789
Q ss_pred eecccCCCHHHHHHHHHHHHHh
Q 044598 85 TCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 85 ~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
+||++|+|++++++++.+.+..
T Consensus 315 iSA~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 315 ISALKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp CBTTTTBTHHHHHHHHHHHHHH
T ss_pred EeCCCCcCHHHHHHHHHHHHHH
Confidence 9999999999999999988753
No 134
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.35 E-value=7.1e-13 Score=81.82 Aligned_cols=85 Identities=15% Similarity=0.089 Sum_probs=60.5
Q ss_pred hHHHhc--ccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC----CHHHHHhhhCCCcccC
Q 044598 4 LWRHYF--QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSLRQ 77 (110)
Q Consensus 4 ~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~----~~~~~~~~~~~~~~~~ 77 (110)
+++.|+ +++|++++|+|+++.++... +... +.. .+.|+++|+||+|+.+.. ....+...+
T Consensus 74 i~~~~~~~~~~d~vi~VvDas~~~~~~~---l~~~-l~~---~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~l------- 139 (256)
T 3iby_A 74 IAAQSVIDLEYDCIINVIDACHLERHLY---LTSQ-LFE---LGKPVVVALNMMDIAEHRGISIDTEKLESLL------- 139 (256)
T ss_dssp HHHHHHHHSCCSEEEEEEEGGGHHHHHH---HHHH-HTT---SCSCEEEEEECHHHHHHTTCEECHHHHHHHH-------
T ss_pred HHHHHHhhCCCCEEEEEeeCCCchhHHH---HHHH-HHH---cCCCEEEEEEChhcCCcCCcHHHHHHHHHHc-------
Confidence 566777 89999999999987543322 2222 222 378999999999974322 223333333
Q ss_pred cceEEEeeecccCCCHHHHHHHHHHH
Q 044598 78 RHWYIQSTCATSGEGLYEGLDWLSNN 103 (110)
Q Consensus 78 ~~~~~~~~Sa~~~~~i~~l~~~l~~~ 103 (110)
+++++++||++|.|++++++++.+.
T Consensus 140 -g~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 140 -GCSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp -CSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred -CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3478899999999999999999875
No 135
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.35 E-value=2.4e-12 Score=84.69 Aligned_cols=95 Identities=12% Similarity=0.016 Sum_probs=64.2
Q ss_pred HhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCC--HHHHHhhhCCCcccCcceEEEe
Q 044598 7 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQS 84 (110)
Q Consensus 7 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 84 (110)
.++++||++++|+|+++..+..+. .++..+. . .++|+++|+||+|+.+... .++....+..........++++
T Consensus 253 ~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~-~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 327 (436)
T 2hjg_A 253 KAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAH-E---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF 327 (436)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHH-HHHHHHH-H---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHH-H---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEE
Confidence 478899999999999876555443 3443332 2 4799999999999975432 2222221110001112457899
Q ss_pred eecccCCCHHHHHHHHHHHHHh
Q 044598 85 TCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 85 ~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
+||++|.|+++++..+.+.+.+
T Consensus 328 ~SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 328 MSALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp CCTTTCTTGGGHHHHHHHHHHH
T ss_pred EecccCCCHHHHHHHHHHHHHH
Confidence 9999999999999999887754
No 136
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.34 E-value=2.5e-12 Score=84.65 Aligned_cols=91 Identities=19% Similarity=0.231 Sum_probs=63.0
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcce-
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW- 80 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~- 80 (110)
+.++..+++.||++|+|+|+++..+.. ..++...+.. .++|+++|+||+|+.+... ...+ ....+.
T Consensus 73 ~~~~~~~~~~ad~il~vvD~~~~~~~~--d~~~~~~l~~---~~~pvilv~NK~D~~~~~~--~~~~------~~~lg~~ 139 (436)
T 2hjg_A 73 RQQAEIAMDEADVIIFMVNGREGVTAA--DEEVAKILYR---TKKPVVLAVNKLDNTEMRA--NIYD------FYSLGFG 139 (436)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTCSCHH--HHHHHHHHTT---CCSCEEEEEECCCC-------CCCS------SGGGSSC
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCCHH--HHHHHHHHHH---cCCCEEEEEECccCccchh--hHHH------HHHcCCC
Confidence 456788999999999999998654432 3455555543 5789999999999854311 1001 111111
Q ss_pred EEEeeecccCCCHHHHHHHHHHHHH
Q 044598 81 YIQSTCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 81 ~~~~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
+++++||++|.|++++++++.+.+.
T Consensus 140 ~~~~iSA~~g~gv~~L~~~i~~~l~ 164 (436)
T 2hjg_A 140 EPYPISGTHGLGLGDLLDAVAEHFK 164 (436)
T ss_dssp CCEECBTTTTBTHHHHHHHHHHTGG
T ss_pred CeEEEeCcCCCChHHHHHHHHHhcC
Confidence 5679999999999999999998875
No 137
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.34 E-value=8.6e-13 Score=85.21 Aligned_cols=97 Identities=18% Similarity=0.138 Sum_probs=63.9
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC-CHHHHHhhhC--CCcccC
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLG--LHSLRQ 77 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~-~~~~~~~~~~--~~~~~~ 77 (110)
|+.++++++++++++++|+|++++. ......+.+.. .++|+++|+||+|+.+.. ..+.+.+.+. .....-
T Consensus 59 f~~~l~~i~~~~~~il~VvD~~d~~--~~~~~~l~~~~-----~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~ 131 (368)
T 3h2y_A 59 FLRILNGIGKSDALVVKIVDIFDFN--GSWLPGLHRFV-----GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGL 131 (368)
T ss_dssp HHHHHHHHHHSCCEEEEEEETTSHH--HHCCTTHHHHS-----SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhccCcEEEEEEECCCCc--ccHHHHHHHHh-----CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCC
Confidence 4678889999999999999999753 11112233321 368999999999996543 2222222210 000011
Q ss_pred cceEEEeeecccCCCHHHHHHHHHHHH
Q 044598 78 RHWYIQSTCATSGEGLYEGLDWLSNNI 104 (110)
Q Consensus 78 ~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 104 (110)
...+++.+||++|.|++++++.+.+..
T Consensus 132 ~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 132 KPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp CCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 123788999999999999999997654
No 138
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.33 E-value=2.6e-12 Score=75.25 Aligned_cols=90 Identities=19% Similarity=0.193 Sum_probs=63.6
Q ss_pred chHHHhcc--cCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC----CHHHHHhhhCCCccc
Q 044598 3 PLWRHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSLR 76 (110)
Q Consensus 3 ~~~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~----~~~~~~~~~~~~~~~ 76 (110)
.++..|+. .++++++|+|.++. .....|+..+.. .+.|+++|+||+|+.... ..+.+...+
T Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~---~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~------ 141 (188)
T 2wjg_A 75 IIARDYIINEKPDLVVNIVDATAL---ERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKIL------ 141 (188)
T ss_dssp HHHHHHHHHHCCSEEEEEEEGGGH---HHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHH------
T ss_pred HHHHHHHhccCCCEEEEEecchhH---HHHHHHHHHHHh----cCCCEEEEEEhhhccccccchHHHHHHHHHh------
Confidence 35677775 49999999998753 334445555432 468999999999984321 222233322
Q ss_pred CcceEEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 77 QRHWYIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 77 ~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
+.+++++||+++.|++++++++.+.+..+
T Consensus 142 --~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 142 --GVKVVPLSAAKKMGIEELKKAISIAVKDK 170 (188)
T ss_dssp --TSCEEECBGGGTBSHHHHHHHHHHHHTTC
T ss_pred --CCCeEEEEecCCCCHHHHHHHHHHHHHhc
Confidence 23688999999999999999999988654
No 139
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.31 E-value=3.5e-12 Score=83.65 Aligned_cols=89 Identities=16% Similarity=0.091 Sum_probs=63.0
Q ss_pred HHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEEe
Q 044598 5 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQS 84 (110)
Q Consensus 5 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (110)
+..+++++|++|+|+|++.... ...++..+.. .+.|+++|+||+|+.+....+. ...+. ...+.++++
T Consensus 107 ~~~~l~~aD~vllVvD~~~~~~---~~~~l~~l~~----~~~piIvV~NK~Dl~~~~~~~~-~~~l~----~~~g~~v~~ 174 (423)
T 3qq5_A 107 ARRVFYRADCGILVTDSAPTPY---EDDVVNLFKE----MEIPFVVVVNKIDVLGEKAEEL-KGLYE----SRYEAKVLL 174 (423)
T ss_dssp HHHHHTSCSEEEEECSSSCCHH---HHHHHHHHHH----TTCCEEEECCCCTTTTCCCTHH-HHHSS----CCTTCCCCC
T ss_pred HHHHHhcCCEEEEEEeCCChHH---HHHHHHHHHh----cCCCEEEEEeCcCCCCccHHHH-HHHHH----HHcCCCEEE
Confidence 4568999999999999843222 2334443332 3789999999999976654322 22221 123457889
Q ss_pred eecccCCCHHHHHHHHHHHHH
Q 044598 85 TCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 85 ~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
+||++|.|++++++++.+.+.
T Consensus 175 vSAktg~gI~eL~~~L~~~l~ 195 (423)
T 3qq5_A 175 VSALQKKGFDDIGKTISEILP 195 (423)
T ss_dssp CSSCCTTSTTTHHHHHHHHSC
T ss_pred EECCCCCCHHHHHHHHHHhhh
Confidence 999999999999999998874
No 140
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.31 E-value=8.3e-12 Score=82.98 Aligned_cols=86 Identities=19% Similarity=0.181 Sum_probs=61.1
Q ss_pred HHhcccCCEEEEEEECCChhhHH---HHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHH--HHhhhCCCcccCcce
Q 044598 6 RHYFQNTQGLIFVVDSNDRDRVV---EARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE--ITDKLGLHSLRQRHW 80 (110)
Q Consensus 6 ~~~~~~~~~~i~v~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~ 80 (110)
..+++++|++++|+|++++.+.. ....++..+ .++|+++|+||+|+.+...... +... ...
T Consensus 307 ~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l------~~~piIvV~NK~Dl~~~~~~~~~~l~~~--------~~~ 372 (476)
T 3gee_A 307 RMKMAEADLILYLLDLGTERLDDELTEIRELKAAH------PAAKFLTVANKLDRAANADALIRAIADG--------TGT 372 (476)
T ss_dssp -CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC------TTSEEEEEEECTTSCTTTHHHHHHHHHH--------HTS
T ss_pred HhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc------CCCCEEEEEECcCCCCccchhHHHHHhc--------CCC
Confidence 44789999999999999765543 222333222 3689999999999976543211 1111 013
Q ss_pred EEEeeecccCCCHHHHHHHHHHHHH
Q 044598 81 YIQSTCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 81 ~~~~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
+++++||++|+|++++++++.+.+.
T Consensus 373 ~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 373 EVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp CEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHh
Confidence 6789999999999999999998876
No 141
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.31 E-value=9.5e-12 Score=84.61 Aligned_cols=95 Identities=22% Similarity=0.256 Sum_probs=65.9
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCH---HHHHhhhCCCcccCc
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA---AEITDKLGLHSLRQR 78 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~ 78 (110)
...+..+++.+|++|+|+|+++..+......|.. ... .+.|+++|+||+|+.+.... +++.+.++..
T Consensus 85 ~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~-~~~----~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~----- 154 (599)
T 3cb4_D 85 SYEVSRSLAACEGALLVVDAGQGVEAQTLANCYT-AME----MDLEVVPVLNKIDLPAADPERVAEEIEDIVGID----- 154 (599)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHH-HHH----TTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCC-----
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHH-HHH----CCCCEEEeeeccCcccccHHHHHHHHHHHhCCC-----
Confidence 4457788999999999999987544333333322 222 46899999999999765422 2233333321
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
..+++++||++|.|++++++++.+.+..
T Consensus 155 ~~~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 155 ATDAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp CTTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred cceEEEeecccCCCchhHHHHHhhcCCC
Confidence 1247799999999999999999988754
No 142
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.31 E-value=1e-12 Score=81.84 Aligned_cols=86 Identities=20% Similarity=0.190 Sum_probs=59.7
Q ss_pred HHHhc--ccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC----CHHHHHhhhCCCcccCc
Q 044598 5 WRHYF--QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSLRQR 78 (110)
Q Consensus 5 ~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~ 78 (110)
++.|+ +++|++++|+|+++.++... +...+.. .+.|+++|+||+|+.+.. ..+.+...+
T Consensus 77 ~~~~~~~~~~d~ii~VvD~~~~~~~~~---~~~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l-------- 141 (274)
T 3i8s_A 77 ACHYILSGDADLLINVVDASNLERNLY---LTLQLLE----LGIPCIVALNMLDIAEKQNIRIEIDALSARL-------- 141 (274)
T ss_dssp HHHHHHHTCCSEEEEEEEGGGHHHHHH---HHHHHHH----HTCCEEEEEECHHHHHHTTEEECHHHHHHHH--------
T ss_pred HHHHHhhcCCCEEEEEecCCChHHHHH---HHHHHHh----cCCCEEEEEECccchhhhhHHHHHHHHHHhc--------
Confidence 44454 79999999999987544322 2222221 268999999999974322 222333333
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHH
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
+++++++||++|.|++++++++.+.+.
T Consensus 142 g~~~i~~SA~~g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 142 GCPVIPLVSTRGRGIEALKLAIDRYKA 168 (274)
T ss_dssp TSCEEECCCGGGHHHHHHHHHHHTCCC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 247889999999999999999987764
No 143
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.31 E-value=1e-12 Score=86.58 Aligned_cols=93 Identities=14% Similarity=0.161 Sum_probs=62.4
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHH-HhhhCCCcccCcce
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEI-TDKLGLHSLRQRHW 80 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~-~~~~~~~~~~~~~~ 80 (110)
+.++..++++||++++|+|+++..+.. ..++..++.. .++|+++|+||+|+.+.. ..+. .+.. ..+.
T Consensus 72 ~~~~~~~~~~ad~il~V~D~~~~~~~~--d~~i~~~l~~---~~~p~ilv~NK~D~~~~~-~~~~~~~~~------~lg~ 139 (439)
T 1mky_A 72 KEVTLNMIREADLVLFVVDGKRGITKE--DESLADFLRK---STVDTILVANKAENLREF-EREVKPELY------SLGF 139 (439)
T ss_dssp HHHHHHHHTTCSEEEEEEETTTCCCHH--HHHHHHHHHH---HTCCEEEEEESCCSHHHH-HHHTHHHHG------GGSS
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCCHH--HHHHHHHHHH---cCCCEEEEEeCCCCcccc-HHHHHHHHH------hcCC
Confidence 346788999999999999987643322 2233343332 368999999999974210 1111 1111 1112
Q ss_pred -EEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 81 -YIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 81 -~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
+++++||++|.|++++++++.+.+..
T Consensus 140 ~~~~~iSA~~g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 140 GEPIPVSAEHNINLDTMLETIIKKLEE 166 (439)
T ss_dssp CSCEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCEEEEeccCCCCHHHHHHHHHHhccc
Confidence 46789999999999999999988763
No 144
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.30 E-value=1e-11 Score=84.43 Aligned_cols=95 Identities=22% Similarity=0.256 Sum_probs=65.8
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCH---HHHHhhhCCCcccCc
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA---AEITDKLGLHSLRQR 78 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~ 78 (110)
...+..+++.||++|+|+|+++..+......|.. ... .+.|+++|+||+|+.+.... +++...++. .
T Consensus 87 ~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~-a~~----~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~-----~ 156 (600)
T 2ywe_A 87 SYEVSRALAACEGALLLIDASQGIEAQTVANFWK-AVE----QDLVIIPVINKIDLPSADVDRVKKQIEEVLGL-----D 156 (600)
T ss_dssp HHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHH-HHH----TTCEEEEEEECTTSTTCCHHHHHHHHHHTSCC-----C
T ss_pred HHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHH-HHH----CCCCEEEEEeccCccccCHHHHHHHHHHhhCC-----C
Confidence 3456778899999999999987544444333322 222 47899999999999765422 122222222 1
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
..+++++||++|.|++++++++.+.+..
T Consensus 157 ~~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 157 PEEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp GGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred cccEEEEEeecCCCchHHHHHHHHhccc
Confidence 1247899999999999999999988754
No 145
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.29 E-value=9.8e-12 Score=76.80 Aligned_cols=85 Identities=20% Similarity=0.243 Sum_probs=60.9
Q ss_pred HHhc--ccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC----CHHHHHhhhCCCcccCcc
Q 044598 6 RHYF--QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSLRQRH 79 (110)
Q Consensus 6 ~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~ 79 (110)
+.|+ +++|++++|+|+++.++. ..++..+.. .+.|+++|+||+|+.+.. ....+...+ +
T Consensus 76 ~~~~~~~~~d~ii~V~D~t~~~~~---~~~~~~l~~----~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~l--------g 140 (258)
T 3a1s_A 76 RDYLLKGDADLVILVADSVNPEQS---LYLLLEILE----MEKKVILAMTAIDEAKKTGMKIDRYELQKHL--------G 140 (258)
T ss_dssp HHHHHHSCCSEEEEEEETTSCHHH---HHHHHHHHT----TTCCEEEEEECHHHHHHTTCCBCHHHHHHHH--------C
T ss_pred HHHHhhcCCCEEEEEeCCCchhhH---HHHHHHHHh----cCCCEEEEEECcCCCCccchHHHHHHHHHHc--------C
Confidence 5666 589999999999875433 234444432 368999999999974321 223333333 2
Q ss_pred eEEEeeecccCCCHHHHHHHHHHHHH
Q 044598 80 WYIQSTCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 80 ~~~~~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
++++++||++|.|++++++++.+...
T Consensus 141 ~~vi~~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 141 IPVVFTSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp SCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCEEEEEeeCCcCHHHHHHHHHHHhh
Confidence 47889999999999999999998765
No 146
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.28 E-value=1.7e-11 Score=76.27 Aligned_cols=87 Identities=15% Similarity=0.195 Sum_probs=61.5
Q ss_pred hHHHhcc--cCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC----CHHHHHhhhCCCcccC
Q 044598 4 LWRHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSLRQ 77 (110)
Q Consensus 4 ~~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~----~~~~~~~~~~~~~~~~ 77 (110)
+++.|+. ++|++++|+|+++.++. ..|...+.. .+.|+++|+||+|+.... ....+...+
T Consensus 71 v~~~~~~~~~~d~vi~V~D~t~~e~~---~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l------- 136 (272)
T 3b1v_A 71 VARDYLLSQRADSILNVVDATNLERN---LYLTTQLIE----TGIPVTIALNMIDVLDGQGKKINVDKLSYHL------- 136 (272)
T ss_dssp HHHHHHHTTCCSEEEEEEEGGGHHHH---HHHHHHHHH----TCSCEEEEEECHHHHHHTTCCCCHHHHHHHH-------
T ss_pred HHHHHHhcCCCCEEEEEecCCchHhH---HHHHHHHHh----cCCCEEEEEEChhhCCcCCcHHHHHHHHHHc-------
Confidence 5677776 69999999999875433 334433332 478999999999974321 222333333
Q ss_pred cceEEEeeecccCCCHHHHHHHHHHHHH
Q 044598 78 RHWYIQSTCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 78 ~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
+++++++||++|+|+++++.++.+.+.
T Consensus 137 -g~~vi~~SA~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 137 -GVPVVATSALKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp -TSCEEECBTTTTBSHHHHHHHHHHSCT
T ss_pred -CCCEEEEEccCCCCHHHHHHHHHHHHh
Confidence 246889999999999999999988654
No 147
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.26 E-value=5e-11 Score=77.88 Aligned_cols=95 Identities=16% Similarity=0.098 Sum_probs=53.8
Q ss_pred HHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCC----HHHHHhhhCCCcccCcceE
Q 044598 6 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----AAEITDKLGLHSLRQRHWY 81 (110)
Q Consensus 6 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~ 81 (110)
...+..+|++|+|+|+++.....+....+..+.. ....|+++++||+|+.+... .+++.+.+.. ......+
T Consensus 99 ~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~---l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~--~~~~~~~ 173 (408)
T 1s0u_A 99 LSGASLMDGAILVIAANEPCPQPQTKEHLMALEI---LGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKG--TIAENAP 173 (408)
T ss_dssp HTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHH---TTCCCEEEEEECTTSSCTTTTTTHHHHHHHHHTT--STTTTCC
T ss_pred HHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHH---cCCCeEEEEEEccCCCCHHHHHHHHHHHHHHHhh--cCCCCCe
Confidence 3445677999999999853111112222222111 12358999999999965432 2333333321 1123567
Q ss_pred EEeeecccCCCHHHHHHHHHHHHH
Q 044598 82 IQSTCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 82 ~~~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
++++||++|.|+++++++|.+.+.
T Consensus 174 ~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 174 IIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp EEEC------CHHHHHHHHHHHSC
T ss_pred EEEeeCCCCCCHHHHHHHHHHhCC
Confidence 899999999999999999998664
No 148
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.26 E-value=2.3e-12 Score=83.22 Aligned_cols=97 Identities=15% Similarity=0.118 Sum_probs=64.3
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC-CHHHHHhhhC--CCcccC
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLG--LHSLRQ 77 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~-~~~~~~~~~~--~~~~~~ 77 (110)
|++++++++++++++++|+|++++.+ .....+.+.+ .++|+++|+||+|+.+.. ..+.+.+.+. ......
T Consensus 61 f~~~L~~~~~~~~lil~VvD~~d~~~--s~~~~l~~~l-----~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~ 133 (369)
T 3ec1_A 61 FLSMLHRIGESKALVVNIVDIFDFNG--SFIPGLPRFA-----ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGL 133 (369)
T ss_dssp HHHHHHHHHHHCCEEEEEEETTCSGG--GCCSSHHHHC-----TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHhhccCcEEEEEEECCCCCC--chhhHHHHHh-----CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCC
Confidence 46778889999999999999998653 1111222322 368999999999996542 2222222210 000111
Q ss_pred cceEEEeeecccCCCHHHHHHHHHHHH
Q 044598 78 RHWYIQSTCATSGEGLYEGLDWLSNNI 104 (110)
Q Consensus 78 ~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 104 (110)
...+++.+||++|.|++++++.+.+..
T Consensus 134 ~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 134 CPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp CCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred CcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 123788999999999999999997765
No 149
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.25 E-value=9.2e-12 Score=83.70 Aligned_cols=100 Identities=14% Similarity=0.023 Sum_probs=66.0
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCC---HHHHHhhhCCCcccC
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSLRQ 77 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~---~~~~~~~~~~~~~~~ 77 (110)
|..++..+++.+|++|+|+|+++..... ....+..... .+.|+++++||+|+.+... ..++...........
T Consensus 65 f~~~~~~~~~~aD~vILVVDa~dg~~~q-t~e~l~~~~~----~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~ 139 (537)
T 3izy_P 65 FSAMRARGTQVTDIVILVVAADDGVMKQ-TVESIQHAKD----AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYG 139 (537)
T ss_dssp TTTSBBSSSBSBSSCEEECBSSSCCCHH-HHHHHHHHHT----TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSS
T ss_pred HHHHHHHHHccCCEEEEEEECCCCccHH-HHHHHHHHHH----cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcC
Confidence 4567778899999999999998743322 2233333321 4689999999999865321 122221111111112
Q ss_pred cceEEEeeecccCCCHHHHHHHHHHHHH
Q 044598 78 RHWYIQSTCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 78 ~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
...+++++||++|.|++++++++...+.
T Consensus 140 ~~~~iv~vSAktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 140 GDVQAVHVSALTGENMMALAEATIALAE 167 (537)
T ss_dssp SSEEECCCCSSSSCSSHHHHHHHHHHHT
T ss_pred CCceEEEEECCCCCCchhHHHHHHHhhh
Confidence 3468999999999999999999987753
No 150
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.24 E-value=6e-11 Score=80.70 Aligned_cols=97 Identities=24% Similarity=0.174 Sum_probs=64.0
Q ss_pred CcchHHHhcccCCEEEEEEECCC---hhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCH--------------
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSND---RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-------------- 63 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~-------------- 63 (110)
|..++..+++.+|++|+|+|+++ +.+++.+. .+. . .+.|+++++||+|+.+....
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l~-~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~ 154 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALN----ILR-M---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQD 154 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HHH-H---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSC
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HHH-H---cCCeEEEEecccccccccccccCCchHHHHHHhH
Confidence 44566777889999999999987 44443322 221 1 47899999999998642110
Q ss_pred H-----------HHHhhh---CCCc-------ccCcceEEEeeecccCCCHHHHHHHHHHHHH
Q 044598 64 A-----------EITDKL---GLHS-------LRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 64 ~-----------~~~~~~---~~~~-------~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
+ ++...+ ++.. ......+++++||++|.|++++++++...+.
T Consensus 155 ~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 155 IQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 0 111111 1100 0023468999999999999999999988765
No 151
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.23 E-value=1.9e-11 Score=80.96 Aligned_cols=86 Identities=13% Similarity=0.108 Sum_probs=59.8
Q ss_pred HhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEEeee
Q 044598 7 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTC 86 (110)
Q Consensus 7 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 86 (110)
.+++.+|++++|+|++++.+... ..++..+ ..+|+++|+||+|+.+..... . .... ....+++++|
T Consensus 299 ~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l------~~~piivV~NK~Dl~~~~~~~----~--~~~~-~~~~~~i~iS 364 (462)
T 3geh_A 299 QAANTADLVLLTIDAATGWTTGD-QEIYEQV------KHRPLILVMNKIDLVEKQLIT----S--LEYP-ENITQIVHTA 364 (462)
T ss_dssp CCCCSCSEEEEEEETTTCSCHHH-HHHHHHH------TTSCEEEEEECTTSSCGGGST----T--CCCC-TTCCCEEEEB
T ss_pred hhhhcCCEEEEEeccCCCCCHHH-HHHHHhc------cCCcEEEEEECCCCCcchhhH----H--HHHh-ccCCcEEEEE
Confidence 46889999999999987544332 2333332 347999999999986532111 1 1111 1334688999
Q ss_pred cccCCCHHHHHHHHHHHHHh
Q 044598 87 ATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 87 a~~~~~i~~l~~~l~~~~~~ 106 (110)
|++|.|++++++++.+.+..
T Consensus 365 Aktg~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 365 AAQKQGIDSLETAILEIVQT 384 (462)
T ss_dssp TTTTBSHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999998754
No 152
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.23 E-value=1.1e-10 Score=72.52 Aligned_cols=90 Identities=20% Similarity=0.204 Sum_probs=63.0
Q ss_pred hHHHhc--ccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC----CCHHHHHhhhCCCcccC
Q 044598 4 LWRHYF--QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----MNAAEITDKLGLHSLRQ 77 (110)
Q Consensus 4 ~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~----~~~~~~~~~~~~~~~~~ 77 (110)
+++.|+ .++|++++|+|+++.. ....++..+... ...|+++|+||+|+.+. .....+...++
T Consensus 72 ~~~~~~~~~~~d~vi~v~D~~~~~---~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg------ 139 (271)
T 3k53_A 72 IARNFILDGNADVIVDIVDSTCLM---RNLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKIDIKKMRKELG------ 139 (271)
T ss_dssp HHHHHHHTTCCSEEEEEEEGGGHH---HHHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHS------
T ss_pred HHHHhhhccCCcEEEEEecCCcch---hhHHHHHHHHhc---CCCCEEEEEEChhcCcccccHHHHHHHHHHcC------
Confidence 456676 6899999999998743 223344444332 23899999999997321 12333444433
Q ss_pred cceEEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 78 RHWYIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 78 ~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
.+++++||++|.|+++++.++.+.+...
T Consensus 140 --~~~~~~Sa~~g~gi~~l~~~i~~~~~~~ 167 (271)
T 3k53_A 140 --VPVIPTNAKKGEGVEELKRMIALMAEGK 167 (271)
T ss_dssp --SCEEECBGGGTBTHHHHHHHHHHHHHTC
T ss_pred --CcEEEEEeCCCCCHHHHHHHHHHHHhcc
Confidence 4688999999999999999999887643
No 153
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.21 E-value=6.6e-11 Score=79.57 Aligned_cols=56 Identities=13% Similarity=0.087 Sum_probs=40.0
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 61 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~ 61 (110)
|+..+..+++.+|++|+|+|+++....... ..+..+. . .++|+++|+||+|+.+..
T Consensus 95 f~~~~~~~l~~aD~allVvDa~~g~~~~t~-~~~~~~~-~---~~iPiivviNK~Dl~~~~ 150 (528)
T 3tr5_A 95 FTEDTYRTLTAVDSALMVIDAAKGVEPRTI-KLMEVCR-L---RHTPIMTFINKMDRDTRP 150 (528)
T ss_dssp CCHHHHHGGGGCSEEEEEEETTTCSCHHHH-HHHHHHH-T---TTCCEEEEEECTTSCCSC
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHH-H---cCCCEEEEEeCCCCcccc
Confidence 455678899999999999999874433332 2333332 2 478999999999996543
No 154
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.20 E-value=2.3e-12 Score=77.25 Aligned_cols=61 Identities=30% Similarity=0.417 Sum_probs=46.9
Q ss_pred cchHHHhccc----CCEEEEEEECC-ChhhHHHHHHHHHHHhcCCC---CCCCeEEEEeeCCCCCCCCC
Q 044598 2 RPLWRHYFQN----TQGLIFVVDSN-DRDRVVEARDELHRMLNEDE---LRDAVLLVFANKQDLPNAMN 62 (110)
Q Consensus 2 ~~~~~~~~~~----~~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~iiv~nK~Dl~~~~~ 62 (110)
+.++..|+++ +|++|+|+|++ ++.++.....++..++.... ..+.|+++|+||+|+.+...
T Consensus 69 ~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 137 (218)
T 1nrj_B 69 RYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 137 (218)
T ss_dssp THHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred HHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCC
Confidence 4577788877 99999999998 76777777777777654321 24799999999999976543
No 155
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.19 E-value=4.6e-11 Score=78.71 Aligned_cols=95 Identities=16% Similarity=0.107 Sum_probs=61.6
Q ss_pred HhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCC--HHHHHhhhCCCcccCcceEEEe
Q 044598 7 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQS 84 (110)
Q Consensus 7 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 84 (110)
.+++.+|++++|+|+++..+..+ ..+...+.. .++|+++|+||+|+.+... .+++...+..........++++
T Consensus 259 ~~i~~ad~vllv~d~~~~~~~~~--~~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (439)
T 1mky_A 259 DSIEKADVVVIVLDATQGITRQD--QRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIF 333 (439)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHhhCCEEEEEEeCCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEE
Confidence 46889999999999886433332 223333322 4789999999999865321 2222211100001112347889
Q ss_pred eecccCCCHHHHHHHHHHHHHh
Q 044598 85 TCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 85 ~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
+||++|.|++++++.+.+...+
T Consensus 334 ~SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 334 TSADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999887654
No 156
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.19 E-value=2.4e-11 Score=80.36 Aligned_cols=92 Identities=23% Similarity=0.252 Sum_probs=59.5
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceE
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWY 81 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 81 (110)
+.++..+++.+|++|+|+|..+. +.....++.+.+.. .++|+++|+||+|+.+.. ....+...+ ... .
T Consensus 93 ~~~~~~~~~~ad~il~VvD~~~~--~~~~d~~l~~~l~~---~~~pvilV~NK~D~~~~~--~~~~e~~~l----g~~-~ 160 (456)
T 4dcu_A 93 RQQAEIAMDEADVIIFMVNGREG--VTAADEEVAKILYR---TKKPVVLAVNKLDNTEMR--ANIYDFYSL----GFG-E 160 (456)
T ss_dssp HHHHHHHHHHCSEEEEEEESSSC--SCHHHHHHHHHHTT---CCSCEEEEEECC-----------CCSGGG----SSS-S
T ss_pred HHHHHhhHhhCCEEEEEEeCCCC--CChHHHHHHHHHHH---cCCCEEEEEECccchhhh--hhHHHHHHc----CCC-c
Confidence 45678889999999999998753 22334455565544 579999999999985331 111111110 111 3
Q ss_pred EEeeecccCCCHHHHHHHHHHHHH
Q 044598 82 IQSTCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 82 ~~~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
.+++||++|.|+.++++++.+.+.
T Consensus 161 ~~~iSA~~g~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 161 PYPISGTHGLGLGDLLDAVAEHFK 184 (456)
T ss_dssp EEECCTTTCTTHHHHHHHHHTTGG
T ss_pred eEEeecccccchHHHHHHHHhhcc
Confidence 458999999999999999988764
No 157
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.19 E-value=7.7e-11 Score=76.03 Aligned_cols=92 Identities=18% Similarity=0.109 Sum_probs=60.2
Q ss_pred hcccCCEEEEEEECCChh--hHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHH---HH----hhhCCCcccCc
Q 044598 8 YFQNTQGLIFVVDSNDRD--RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE---IT----DKLGLHSLRQR 78 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~---~~----~~~~~~~~~~~ 78 (110)
.+..+|++++|+|++++. ..... ..+..++......+.|+++|+||+|+.+.. ..+ .. ..+. ..
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~-~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~l~~~l~-----~~ 326 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETL-QSSFEILREIGVSGKPILVTLNKIDKINGD-LYKKLDLVEKLSKELY-----SP 326 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHH-HHHHHHHHHHTCCSCCEEEEEECGGGCCSC-HHHHHHHHHHHHHHHC-----SC
T ss_pred HHHhCCEEEEEEECCCCcchHHHHH-HHHHHHHHHhCcCCCCEEEEEECCCCCCch-HHHHHHHHHHHHHHhc-----CC
Confidence 578999999999998764 22222 222223322222468999999999986543 211 11 1110 12
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
..+++++||+++.|++++++++.+.+..
T Consensus 327 ~~~~~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 327 IFDVIPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp EEEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCcCHHHHHHHHHHHhcc
Confidence 3467899999999999999999887754
No 158
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.16 E-value=6e-11 Score=79.01 Aligned_cols=94 Identities=13% Similarity=0.080 Sum_probs=61.2
Q ss_pred chHHHhcccCCEEEEEEECCC---hhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHH----HHHhhhCCCcc
Q 044598 3 PLWRHYFQNTQGLIFVVDSND---RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA----EITDKLGLHSL 75 (110)
Q Consensus 3 ~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~----~~~~~~~~~~~ 75 (110)
..+..+++.+|++|+|+|+++ +.+.+. +..+ .. .+.|.++++||+|+.+....+ ++...+... .
T Consensus 88 ~~~~~~~~~aD~~ilVvda~~g~~~qt~e~----l~~~-~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~-~ 158 (482)
T 1wb1_A 88 RAVVSAADIIDLALIVVDAKEGPKTQTGEH----MLIL-DH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQST-H 158 (482)
T ss_dssp HHHHHHTTSCCEEEEEEETTTCSCHHHHHH----HHHH-HH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHS-S
T ss_pred HHHHHHHhhCCEEEEEEecCCCccHHHHHH----HHHH-HH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhh-c
Confidence 345677899999999999986 333322 2211 11 367889999999996522111 122221100 0
Q ss_pred cCcceEEEeeecccCCCHHHHHHHHHHHHH
Q 044598 76 RQRHWYIQSTCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 76 ~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
.....+++++||++|.|+++++++|.+.+.
T Consensus 159 ~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 159 NLKNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp SGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 011457899999999999999999998764
No 159
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.13 E-value=6e-11 Score=77.56 Aligned_cols=95 Identities=15% Similarity=0.096 Sum_probs=58.6
Q ss_pred HHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCC----HHHHHhhhCCCcccCcceE
Q 044598 6 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----AAEITDKLGLHSLRQRHWY 81 (110)
Q Consensus 6 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~ 81 (110)
...+..+|++|+|+|+++.....+....+..+... ...|+++++||+|+.+... .+++...+.. ......+
T Consensus 101 ~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~--~~~~~~~ 175 (410)
T 1kk1_A 101 LAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALENYRQIKEFIEG--TVAENAP 175 (410)
T ss_dssp HHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT--STTTTCC
T ss_pred HhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc---CCCcEEEEEECccCCCHHHHHHHHHHHHHHHHh--cCcCCCe
Confidence 34466789999999998531111112222211111 2368999999999865321 1222332221 1123568
Q ss_pred EEeeecccCCCHHHHHHHHHHHHH
Q 044598 82 IQSTCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 82 ~~~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
++++||++|.|+++++++|.+.+.
T Consensus 176 ~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 176 IIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHSC
T ss_pred EEEeeCCCCCCHHHHHHHHHHhCC
Confidence 999999999999999999988664
No 160
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.12 E-value=8e-11 Score=73.60 Aligned_cols=90 Identities=12% Similarity=0.091 Sum_probs=61.9
Q ss_pred hHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEE
Q 044598 4 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQ 83 (110)
Q Consensus 4 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (110)
.+...++++|++++|+|+.+|.+... ..+.+++ .++|.++|+||+|+.+....+...+.+ ...+.+++
T Consensus 16 ~~~~~l~~aDvVl~VvDAr~p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~-----~~~g~~~i 83 (282)
T 1puj_A 16 EVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHF-----ENQGIRSL 83 (282)
T ss_dssp HHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHH-----HTTTCCEE
T ss_pred HHHHHHhhCCEEEEEEeCCCCCccCC--HHHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHH-----HhcCCcEE
Confidence 34557899999999999998755421 1233333 468999999999996521111222222 12234678
Q ss_pred eeecccCCCHHHHHHHHHHHHH
Q 044598 84 STCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 84 ~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
.+||+++.|++++++.+.+.+.
T Consensus 84 ~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 84 SINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHH
T ss_pred EEECCCcccHHHHHHHHHHHHH
Confidence 9999999999999998887765
No 161
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.12 E-value=6.1e-11 Score=74.72 Aligned_cols=91 Identities=16% Similarity=0.129 Sum_probs=59.8
Q ss_pred HHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC-CCHHHHHhhhCCCcccCcc-eEE
Q 044598 5 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-MNAAEITDKLGLHSLRQRH-WYI 82 (110)
Q Consensus 5 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~-~~~ 82 (110)
...+++.+|++++|+|+++ +.....++...+.. .+.|.++++||+|+.+. ....+....+. ...+ ..+
T Consensus 82 ~~~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~---~~~P~ilvlNK~D~~~~~~~~~~~l~~l~----~~~~~~~~ 151 (301)
T 1ega_A 82 ASSSIGDVELVIFVVEGTR---WTPDDEMVLNKLRE---GKAPVILAVNKVDNVQEKADLLPHLQFLA----SQMNFLDI 151 (301)
T ss_dssp TTSCCCCEEEEEEEEETTC---CCHHHHHHHHHHHS---SSSCEEEEEESTTTCCCHHHHHHHHHHHH----TTSCCSEE
T ss_pred HHHHHhcCCEEEEEEeCCC---CCHHHHHHHHHHHh---cCCCEEEEEECcccCccHHHHHHHHHHHH----HhcCcCce
Confidence 4567889999999999876 22222344444432 46899999999998652 11111111111 0112 268
Q ss_pred EeeecccCCCHHHHHHHHHHHHH
Q 044598 83 QSTCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 83 ~~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
+++||+++.|++++++++.+.+.
T Consensus 152 i~iSA~~g~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 152 VPISAETGLNVDTIAAIVRKHLP 174 (301)
T ss_dssp EECCTTTTTTHHHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 89999999999999999987654
No 162
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.12 E-value=9.2e-11 Score=73.39 Aligned_cols=96 Identities=15% Similarity=0.097 Sum_probs=60.4
Q ss_pred chHHHhcccCCEEE-EEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCC--HHHHHhhhCCCcccCcc
Q 044598 3 PLWRHYFQNTQGLI-FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRH 79 (110)
Q Consensus 3 ~~~~~~~~~~~~~i-~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~ 79 (110)
.++..|+++++.++ +|+|+++.....+...++.. +.. .+.|+++|+||+|+.+... .+.+...+ .......
T Consensus 153 ~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~-~~~---~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~--~~~~~~~ 226 (299)
T 2aka_B 153 DMLMQFVTKENCLILAVSPANSDLANSDALKIAKE-VDP---QGQRTIGVITKLDLMDEGTDARDVLENKL--LPLRRGY 226 (299)
T ss_dssp HHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHH-HCT---TCSSEEEEEECGGGSCTTCCCHHHHTTCS--SCCTTCE
T ss_pred HHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHH-hCC---CCCeEEEEEEccccCCCCchHHHHHhCCc--CcCCCCc
Confidence 46678899998777 79998764332222222322 222 4689999999999865432 22221111 0111123
Q ss_pred eEEEeeecccCCCHHHHHHHHHHHH
Q 044598 80 WYIQSTCATSGEGLYEGLDWLSNNI 104 (110)
Q Consensus 80 ~~~~~~Sa~~~~~i~~l~~~l~~~~ 104 (110)
.+++++||++|.|++++++++.+..
T Consensus 227 ~~v~~~SA~~~~gi~~l~~~l~~~~ 251 (299)
T 2aka_B 227 IGVVNRSQKDIDGKKDITAALAAER 251 (299)
T ss_dssp EECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred EEEECCChhhccccccHHHHHHHHH
Confidence 4788999999999999999987743
No 163
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.09 E-value=6.7e-11 Score=79.01 Aligned_cols=94 Identities=19% Similarity=0.197 Sum_probs=60.8
Q ss_pred CcchHHHhcccCCEEEEEEECCC---hhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCC----
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSND---RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH---- 73 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~---- 73 (110)
|..++..+++.+|++++|+|+++ +.+.+. +.... . .+.|+++++||+|+.+... +.+...+...
T Consensus 64 f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~----l~~~~-~---~~vPiIVviNKiDl~~~~~-~~v~~~l~~~~~~~ 134 (501)
T 1zo1_I 64 FTSMRARGAQATDIVVLVVAADDGVMPQTIEA----IQHAK-A---AQVPVVVAVNKIDKPEADP-DRVKNELSQYGILP 134 (501)
T ss_dssp CTTSBCSSSBSCSSEEEEEETTTBSCTTTHHH----HHHHH-H---TTCCEEEEEECSSSSTTCC-CCTTCCCCCCCCCT
T ss_pred HHHHHHHHHhhCCEEEEEeecccCccHHHHHH----HHHHH-h---cCceEEEEEEeccccccCH-HHHHHHHHHhhhhH
Confidence 45566777899999999999876 233322 22221 1 4689999999999965321 1111111100
Q ss_pred cccCcceEEEeeecccCCCHHHHHHHHHHH
Q 044598 74 SLRQRHWYIQSTCATSGEGLYEGLDWLSNN 103 (110)
Q Consensus 74 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 103 (110)
.......+++++||++|.|++++++++...
T Consensus 135 ~~~~~~~~~v~vSAktG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 135 EEWGGESQFVHVSAKAGTGIDELLDAILLQ 164 (501)
T ss_dssp TCCSSSCEEEECCTTTCTTCTTHHHHTTTT
T ss_pred HHhCCCccEEEEeeeeccCcchhhhhhhhh
Confidence 001123689999999999999999998653
No 164
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.07 E-value=3.5e-10 Score=66.45 Aligned_cols=67 Identities=30% Similarity=0.437 Sum_probs=49.2
Q ss_pred cchHHHhccc----CCEEEEEEECC-ChhhHHHHHHHHHHHhcCCC---CCCCeEEEEeeCCCCCCCCCHHHHHh
Q 044598 2 RPLWRHYFQN----TQGLIFVVDSN-DRDRVVEARDELHRMLNEDE---LRDAVLLVFANKQDLPNAMNAAEITD 68 (110)
Q Consensus 2 ~~~~~~~~~~----~~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~iiv~nK~Dl~~~~~~~~~~~ 68 (110)
+..|..++.+ +|++++|+|++ ++.++.....|+..++.... ..+.|+++|+||+|+.+....+++..
T Consensus 105 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~ 179 (193)
T 2ged_A 105 RYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKD 179 (193)
T ss_dssp SCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHH
T ss_pred HHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHH
Confidence 4566777766 89999999999 77778777777766654321 14799999999999977655444433
No 165
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.02 E-value=1.1e-09 Score=70.77 Aligned_cols=93 Identities=8% Similarity=-0.041 Sum_probs=59.8
Q ss_pred hHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeE-EEEee-CCCCCCCCCH----HHHHhhhCCCcccC
Q 044598 4 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVL-LVFAN-KQDLPNAMNA----AEITDKLGLHSLRQ 77 (110)
Q Consensus 4 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-iiv~n-K~Dl~~~~~~----~~~~~~~~~~~~~~ 77 (110)
.+...++.+|++|+|+| ++ ....+...++..... .+.|. ++++| |+|+ +.... +++.+.+.. ...
T Consensus 76 ~~~~~~~~aD~ailVvd-~~-g~~~qt~e~~~~~~~----~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~--~~~ 146 (370)
T 2elf_A 76 SLITALNISDIAVLCIP-PQ-GLDAHTGECIIALDL----LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSG--TVL 146 (370)
T ss_dssp HHHHHHHTCSEEEEEEC-TT-CCCHHHHHHHHHHHH----TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTT--STT
T ss_pred HHHHHHHHCCEEEEEEc-CC-CCcHHHHHHHHHHHH----cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHh--cCC
Confidence 34556789999999999 53 223333344333221 35666 88999 9998 43211 223332221 112
Q ss_pred cceEEEe--eeccc---CCCHHHHHHHHHHHHH
Q 044598 78 RHWYIQS--TCATS---GEGLYEGLDWLSNNIA 105 (110)
Q Consensus 78 ~~~~~~~--~Sa~~---~~~i~~l~~~l~~~~~ 105 (110)
..+++++ +||++ ++|++++++.|.+.+.
T Consensus 147 ~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~ 179 (370)
T 2elf_A 147 QDWECISLNTNKSAKNPFEGVDELKARINEVAE 179 (370)
T ss_dssp TTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHH
T ss_pred CceEEEecccccccCcCCCCHHHHHHHHHhhcc
Confidence 3468999 99999 9999999999988765
No 166
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.00 E-value=1.4e-10 Score=76.38 Aligned_cols=90 Identities=14% Similarity=0.148 Sum_probs=53.9
Q ss_pred chHHHhcccCCEEEEEEECCChhhHHHH-------HHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC-CH-------HHHH
Q 044598 3 PLWRHYFQNTQGLIFVVDSNDRDRVVEA-------RDELHRMLNEDELRDAVLLVFANKQDLPNAM-NA-------AEIT 67 (110)
Q Consensus 3 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~-~~-------~~~~ 67 (110)
..+..+++.+|++|+|+|+++ .+++.. ...+.... . ....|+++++||+|+.+.. .. +++.
T Consensus 99 ~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~-~--~~~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~ 174 (435)
T 1jny_A 99 KNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAK-T--MGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVS 174 (435)
T ss_dssp HHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHH-H--TTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHH
T ss_pred HHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHH-H--cCCCeEEEEEEcccCCCccccHHHHHHHHHHHH
Confidence 456778999999999999987 445422 22221111 1 1224689999999997631 11 1222
Q ss_pred hhhCCCcccCcceEEEeeecccCCCHHHH
Q 044598 68 DKLGLHSLRQRHWYIQSTCATSGEGLYEG 96 (110)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 96 (110)
..+....+.....+++++||++|.|+.++
T Consensus 175 ~~~~~~~~~~~~~~~i~iSA~~g~~v~e~ 203 (435)
T 1jny_A 175 KFMRSYGFNTNKVRFVPVVAPSGDNITHK 203 (435)
T ss_dssp HHHHHTTCCCTTCEEEECBTTTTBTTTBC
T ss_pred HHHHHcCCCcCCceEEEeecccCcccccc
Confidence 22211011122468999999999999754
No 167
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.98 E-value=2e-09 Score=70.87 Aligned_cols=91 Identities=13% Similarity=-0.007 Sum_probs=54.2
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCH------HHHHhhhCCCcc
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA------AEITDKLGLHSL 75 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~------~~~~~~~~~~~~ 75 (110)
...+..+++.+|++|+|+|+++... .+...++...... ..+|+++|+||+|+.+.... +++...+.....
T Consensus 118 ~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~---~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g~ 193 (434)
T 1zun_B 118 TRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL---GIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAF 193 (434)
T ss_dssp HHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT---TCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEEcCcCCcccHHHHHHHHHHHHHHHHHhCC
Confidence 3456678899999999999986422 2223333222111 23479999999999753211 111111110000
Q ss_pred cCcceEEEeeecccCCCHHHH
Q 044598 76 RQRHWYIQSTCATSGEGLYEG 96 (110)
Q Consensus 76 ~~~~~~~~~~Sa~~~~~i~~l 96 (110)
.....+++++||++|.|++++
T Consensus 194 ~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 194 KPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp CCSEEEEEECCTTTCTTTSSC
T ss_pred CccCceEEEEeccCCCCcccc
Confidence 023468999999999999874
No 168
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.98 E-value=2.2e-09 Score=70.79 Aligned_cols=93 Identities=16% Similarity=0.132 Sum_probs=54.5
Q ss_pred cchHHHhcccCCEEEEEEECCChhh---H---HHHHHHHHHHhcCCCCCCCe-EEEEeeCCCCCCCCC----HHH----H
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDR---V---VEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN----AAE----I 66 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~~-~iiv~nK~Dl~~~~~----~~~----~ 66 (110)
.+.+..+++.||++|+|+|+++... + .+....+..... .+.| +++++||+|+..... .++ +
T Consensus 109 ~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~----~~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~ 184 (439)
T 3j2k_7 109 VPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT----AGVKHLIVLINKMDDPTVNWSNERYEECKEKL 184 (439)
T ss_pred HHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH----cCCCeEEEEeecCCCcccchHHHHHHHHHHHH
Confidence 3456677889999999999986421 0 122222222211 3455 999999999854211 111 1
Q ss_pred HhhhCCCccc-CcceEEEeeecccCCCHHHHHH
Q 044598 67 TDKLGLHSLR-QRHWYIQSTCATSGEGLYEGLD 98 (110)
Q Consensus 67 ~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~l~~ 98 (110)
...+....+. ...++++++||++|.|++++.+
T Consensus 185 ~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 185 VPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred HHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 1111100011 1246899999999999998654
No 169
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.98 E-value=2.6e-10 Score=74.42 Aligned_cols=98 Identities=19% Similarity=0.179 Sum_probs=60.5
Q ss_pred chHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCe-EEEEeeCCCCCCCCC-HH----HHHhhhCCCccc
Q 044598 3 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN-AA----EITDKLGLHSLR 76 (110)
Q Consensus 3 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~Dl~~~~~-~~----~~~~~~~~~~~~ 76 (110)
..+..+++.+|++|+|+|+++... .+...++..+.. .+.| +++++||+|+.+... .+ ++...+......
T Consensus 90 ~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~----~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 164 (405)
T 2c78_A 90 KNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFP 164 (405)
T ss_dssp HHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhccc
Confidence 456677899999999999986432 233344433321 3577 889999999964211 11 122221110011
Q ss_pred CcceEEEeeecccCCC------------------HHHHHHHHHHHHH
Q 044598 77 QRHWYIQSTCATSGEG------------------LYEGLDWLSNNIA 105 (110)
Q Consensus 77 ~~~~~~~~~Sa~~~~~------------------i~~l~~~l~~~~~ 105 (110)
....+++++||++|.| ++++++.+.+.+.
T Consensus 165 ~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 165 GDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp TTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred ccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 1245789999999987 7778877776553
No 170
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.97 E-value=3.9e-10 Score=73.45 Aligned_cols=98 Identities=20% Similarity=0.140 Sum_probs=60.0
Q ss_pred chHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCe-EEEEeeCCCCCCCCCH-----HHHHhhhCCCccc
Q 044598 3 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMNA-----AEITDKLGLHSLR 76 (110)
Q Consensus 3 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~Dl~~~~~~-----~~~~~~~~~~~~~ 76 (110)
..+..+++.+|++|+|+|+++... .+....+..+. . .+.| +++++||+|+.+.... +++.+.+......
T Consensus 81 ~~~~~~~~~aD~~ilVvda~~g~~-~qt~e~l~~~~-~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 155 (397)
T 1d2e_A 81 KNMITGTAPLDGCILVVAANDGPM-PQTREHLLLAR-Q---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYK 155 (397)
T ss_dssp HHHHHTSSCCSEEEEEEETTTCSC-HHHHHHHHHHH-H---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHhhHhhCCEEEEEEECCCCCC-HHHHHHHHHHH-H---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 355677899999999999986322 22223332221 1 3677 6899999999642110 1222222110111
Q ss_pred CcceEEEeeecccCCC----------HHHHHHHHHHHHH
Q 044598 77 QRHWYIQSTCATSGEG----------LYEGLDWLSNNIA 105 (110)
Q Consensus 77 ~~~~~~~~~Sa~~~~~----------i~~l~~~l~~~~~ 105 (110)
....+++++||++|.| ++++++.+.+.+.
T Consensus 156 ~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 156 GEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp TTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred cccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 2245889999999764 8899998887664
No 171
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.96 E-value=1e-09 Score=73.18 Aligned_cols=91 Identities=20% Similarity=0.157 Sum_probs=52.6
Q ss_pred cchHHHhcccCCEEEEEEECCChhhH------HHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCC--HHHHHhh----
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRV------VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDK---- 69 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~------~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~--~~~~~~~---- 69 (110)
...+..+++.+|++|+|+|+++.... ......+. .... ...+|+++|+||+|+.+... .+++...
T Consensus 125 ~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~-~~~~--~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~ 201 (483)
T 3p26_A 125 VPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHML-LASS--LGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPY 201 (483)
T ss_dssp HHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHH-HHHH--TTCCCEEEEEECGGGGTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHH-HHHH--cCCCcEEEEEECcCcccchHHHHHHHHHHHHHH
Confidence 45667789999999999999874221 11111111 1111 12357999999999965321 1111111
Q ss_pred hCCCcccCcceEEEeeecccCCCHHH
Q 044598 70 LGLHSLRQRHWYIQSTCATSGEGLYE 95 (110)
Q Consensus 70 ~~~~~~~~~~~~~~~~Sa~~~~~i~~ 95 (110)
+..........+++++||++|.|+++
T Consensus 202 l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 202 LVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHcCCCcccceEEEEeeecCCCccc
Confidence 10000112357899999999999975
No 172
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.91 E-value=3.5e-09 Score=69.41 Aligned_cols=93 Identities=20% Similarity=0.199 Sum_probs=60.4
Q ss_pred cccCCEEEEEEECCChhhHHHHHHHHHHHhcCC-CCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEEeeec
Q 044598 9 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 87 (110)
Q Consensus 9 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 87 (110)
.++++.+++++|++ ...+.+...+..+..... .+...|.++++||+|+......+.+...+ ......++.+||
T Consensus 233 ~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l-----~~~g~~vi~iSA 306 (416)
T 1udx_A 233 IARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADAL-----AREGLAVLPVSA 306 (416)
T ss_dssp HTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHH-----HTTTSCEEECCT
T ss_pred HHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHH-----HhcCCeEEEEEC
Confidence 45799999999997 333444433333322211 12358899999999986431112222221 123456889999
Q ss_pred ccCCCHHHHHHHHHHHHHhh
Q 044598 88 TSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 88 ~~~~~i~~l~~~l~~~~~~~ 107 (110)
++++|+++++.++.+.+...
T Consensus 307 ~~g~gi~eL~~~i~~~l~~~ 326 (416)
T 1udx_A 307 LTGAGLPALKEALHALVRST 326 (416)
T ss_dssp TTCTTHHHHHHHHHHHHHTS
T ss_pred CCccCHHHHHHHHHHHHHhc
Confidence 99999999999999988653
No 173
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.90 E-value=2.8e-09 Score=67.15 Aligned_cols=99 Identities=13% Similarity=0.118 Sum_probs=59.6
Q ss_pred chHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCC--HHHHHhhhCCCcccCcce
Q 044598 3 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHW 80 (110)
Q Consensus 3 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~ 80 (110)
.++..|++++|++++|+|+++..........+...+.. .+.|+++|+||+|+.+... .+.+... .........
T Consensus 159 ~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~---~~~~~i~v~NK~Dl~~~~~~~~~~~~~~--~~~~~~~~~ 233 (315)
T 1jwy_B 159 RMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP---EGKRTIGVITKLDLMDKGTDAMEVLTGR--VIPLTLGFI 233 (315)
T ss_dssp HHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS---SCSSEEEEEECTTSSCSSCCCHHHHTTS--SSCCTTCEE
T ss_pred HHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCC---CCCcEEEEEcCcccCCcchHHHHHHhCC--CccCCCCeE
Confidence 45677899999999999974322110111122233322 4689999999999865432 2222211 111111234
Q ss_pred EEEeeeccc---CCCHHHHHHHHHHHHHh
Q 044598 81 YIQSTCATS---GEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 81 ~~~~~Sa~~---~~~i~~l~~~l~~~~~~ 106 (110)
++..+||.+ +.|+.+++..+.+.+..
T Consensus 234 ~v~~~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 234 GVINRSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp ECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred EEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence 566677777 89999999998887754
No 174
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.89 E-value=4.2e-09 Score=72.97 Aligned_cols=100 Identities=16% Similarity=0.224 Sum_probs=63.5
Q ss_pred chHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC-----CHH-------HHHhhh
Q 044598 3 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAA-------EITDKL 70 (110)
Q Consensus 3 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~-----~~~-------~~~~~~ 70 (110)
..+..|+++||++|+|+|++++.+..+... +...+.. .+.|+++|+||+|+.... ..+ .+...+
T Consensus 192 ~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~-l~~~l~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~ 267 (695)
T 2j69_A 192 ELSLGYVNNCHAILFVMRASQPCTLGERRY-LENYIKG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVF 267 (695)
T ss_dssp HHHTHHHHSSSEEEEEEETTSTTCHHHHHH-HHHHTTT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCEEEEEEeCCCccchhHHHH-HHHHHHh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHH
Confidence 356688999999999999987655444332 3333322 367899999999985321 100 111110
Q ss_pred --CCCcc-c-----CcceEEEeeecc--------------cCCCHHHHHHHHHHHHHh
Q 044598 71 --GLHSL-R-----QRHWYIQSTCAT--------------SGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 71 --~~~~~-~-----~~~~~~~~~Sa~--------------~~~~i~~l~~~l~~~~~~ 106 (110)
.+... . ....+++++||+ ++.|+++++..+.+.+..
T Consensus 268 ~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 268 NANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp HHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHH
Confidence 00000 0 123468899999 999999999999887743
No 175
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.88 E-value=2.2e-08 Score=67.51 Aligned_cols=56 Identities=18% Similarity=0.134 Sum_probs=38.1
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 61 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~ 61 (110)
|...+..+++.+|++|+|+|+++.... .....+.. ... .+.|+++++||+|+....
T Consensus 95 f~~~~~~~l~~aD~~IlVvDa~~g~~~-~t~~~~~~-~~~---~~ipiivviNK~Dl~~~~ 150 (529)
T 2h5e_A 95 FSEDTYRTLTAVDCCLMVIDAAKGVED-RTRKLMEV-TRL---RDTPILTFMNKLDRDIRD 150 (529)
T ss_dssp CCHHHHHGGGGCSEEEEEEETTTCSCH-HHHHHHHH-HTT---TTCCEEEEEECTTSCCSC
T ss_pred HHHHHHHHHHHCCEEEEEEeCCccchH-HHHHHHHH-HHH---cCCCEEEEEcCcCCcccc
Confidence 345667789999999999999864221 12222222 222 478999999999997653
No 176
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.85 E-value=4.7e-09 Score=64.57 Aligned_cols=96 Identities=13% Similarity=0.178 Sum_probs=57.1
Q ss_pred HHhcccCCEEEEEEECCChhhH-HHHHHHHHHHhcCCCCCCCeEEEEee-CCCCCCCCCHHH------------HHhhhC
Q 044598 6 RHYFQNTQGLIFVVDSNDRDRV-VEARDELHRMLNEDELRDAVLLVFAN-KQDLPNAMNAAE------------ITDKLG 71 (110)
Q Consensus 6 ~~~~~~~~~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~iiv~n-K~Dl~~~~~~~~------------~~~~~~ 71 (110)
..+++++|++++|+|+++.... .....++.+.... . ...|.++++| |+|+.+. .... +...++
T Consensus 100 ~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~-~-~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~ 176 (260)
T 2xtp_A 100 LLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGE-D-AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAACG 176 (260)
T ss_dssp HHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCG-G-GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHTT
T ss_pred HhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCc-h-hhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHhC
Confidence 3478899999999999862222 2222344443321 1 1356666666 9999743 2222 122221
Q ss_pred CCcccCcceEEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 72 LHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 72 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
.. . ..+..+++||+++.|+++++.++.+.+...
T Consensus 177 ~~-~--~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 177 GR-I--CAFNNRAEGSNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp TC-E--EECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred Ce-E--EEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence 10 0 001116899999999999999999988753
No 177
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.82 E-value=2.5e-09 Score=77.24 Aligned_cols=98 Identities=18% Similarity=0.162 Sum_probs=60.1
Q ss_pred chHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCe-EEEEeeCCCCCCCCCH-----HHHHhhhCCCccc
Q 044598 3 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMNA-----AEITDKLGLHSLR 76 (110)
Q Consensus 3 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~Dl~~~~~~-----~~~~~~~~~~~~~ 76 (110)
..+..+++.+|++|+|+|+++... .+...++..+.. .++| +++++||+|+.+.... +++...+......
T Consensus 374 ~~mi~gas~AD~aILVVDAtdGv~-~QTrEhL~ll~~----lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~ 448 (1289)
T 3avx_A 374 KNMITGAAQMDGAILVVAATDGPM-PQTREHILLGRQ----VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP 448 (1289)
T ss_dssp HHHHHTSCCCSEEEEEEETTTCSC-TTHHHHHHHHHH----HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhhCCEEEEEEcCCccCc-HHHHHHHHHHHH----cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccc
Confidence 345667899999999999986421 222233332221 3577 7899999999752111 1222222110111
Q ss_pred CcceEEEeeecccC--------CCHHHHHHHHHHHHH
Q 044598 77 QRHWYIQSTCATSG--------EGLYEGLDWLSNNIA 105 (110)
Q Consensus 77 ~~~~~~~~~Sa~~~--------~~i~~l~~~l~~~~~ 105 (110)
....+++++||++| .|++++++.+.+.+.
T Consensus 449 ~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 449 GDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred ccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 23468999999999 468889988887653
No 178
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.81 E-value=1.2e-09 Score=70.30 Aligned_cols=91 Identities=15% Similarity=0.127 Sum_probs=56.8
Q ss_pred HhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCH----HHHHhhhCCCc--ccCcce
Q 044598 7 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AEITDKLGLHS--LRQRHW 80 (110)
Q Consensus 7 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~----~~~~~~~~~~~--~~~~~~ 80 (110)
...+.+|++++|+|+........ +. ....+.|.++|+||+|+.+.... .++...+.... ......
T Consensus 188 ~~~~~aD~vl~V~d~~~~~~~~~--------l~-~~~~~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 258 (355)
T 3p32_A 188 AVANMVDTFVLLTLARTGDQLQG--------IK-KGVLELADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRP 258 (355)
T ss_dssp HHHTTCSEEEEEEESSTTCTTTT--------CC-TTSGGGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCC
T ss_pred HHHHhCCEEEEEECCCCCccHHH--------HH-HhHhhcCCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCC
Confidence 34588999999999865332211 11 11235799999999998533211 11222111000 001234
Q ss_pred EEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 81 YIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 81 ~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
+++++||++|+|++++++++.+.+..
T Consensus 259 ~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 259 PVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp CEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 78999999999999999999988754
No 179
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.80 E-value=6.2e-08 Score=67.17 Aligned_cols=55 Identities=20% Similarity=0.140 Sum_probs=39.6
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~ 60 (110)
|...+..+++.+|++|+|+|+++........ .+..... .+.|+++|+||+|+...
T Consensus 90 f~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~-~~~~~~~----~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 90 FTIEVERSMRVLDGAIVVFDSSQGVEPQSET-VWRQAEK----YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTTCSCHHHHH-HHHHHHH----TTCCEEEEEECTTSTTC
T ss_pred hHHHHHHHHHHCCEEEEEEECCCCcchhhHH-HHHHHHH----cCCCEEEEEECCCcccC
Confidence 4556788999999999999998754443332 2332222 47899999999999754
No 180
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.80 E-value=3.8e-09 Score=72.24 Aligned_cols=91 Identities=18% Similarity=0.083 Sum_probs=52.4
Q ss_pred chHHHhcccCCEEEEEEECCChhh------HHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCC--HHH----HHhhh
Q 044598 3 PLWRHYFQNTQGLIFVVDSNDRDR------VVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAE----ITDKL 70 (110)
Q Consensus 3 ~~~~~~~~~~~~~i~v~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~--~~~----~~~~~ 70 (110)
..+..+++.+|++|+|+|+++... .......+.... . ...+|+++|+||+|+.+... .++ +...+
T Consensus 260 ~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~-~--lgi~~iIVVvNKiDl~~~~~~~~~ei~~~l~~~l 336 (611)
T 3izq_1 260 PNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLAS-S--LGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYL 336 (611)
T ss_dssp HHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHH-T--TTCCEEEEEEECTTTTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHH-H--cCCCeEEEEEecccccchhHHHHHHHHHHHHHHH
Confidence 345667899999999999985310 011222222211 1 12356999999999975221 111 11111
Q ss_pred CCCcccCcceEEEeeecccCCCHHHH
Q 044598 71 GLHSLRQRHWYIQSTCATSGEGLYEG 96 (110)
Q Consensus 71 ~~~~~~~~~~~~~~~Sa~~~~~i~~l 96 (110)
..........+++++||++|.|+.++
T Consensus 337 ~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 337 VDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HhhcccccCccEEeeecccCCCcccc
Confidence 00001123568999999999999865
No 181
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.74 E-value=4.1e-09 Score=64.77 Aligned_cols=95 Identities=9% Similarity=-0.038 Sum_probs=54.3
Q ss_pred hcccCCEEEEEEECCChhhHHHHHH---HHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhC-CC----------
Q 044598 8 YFQNTQGLIFVVDSNDRDRVVEARD---ELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG-LH---------- 73 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~-~~---------- 73 (110)
++.+ +++++++|+.......+... ........ .+.|+++|+||+|+.+....+++...+. ..
T Consensus 135 ~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~---~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~ 210 (262)
T 1yrb_A 135 NLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR---LGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDP 210 (262)
T ss_dssp TSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH---HTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCC
T ss_pred HHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc---cCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccc
Confidence 4466 89999999754322222111 11111111 3589999999999864321111111110 00
Q ss_pred --------------cccCcceEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 74 --------------SLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 74 --------------~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
.......+++++||++++|++++++++.+.+..
T Consensus 211 ~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 211 SMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp SHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 000122367899999999999999999987753
No 182
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.73 E-value=3.5e-09 Score=70.34 Aligned_cols=92 Identities=12% Similarity=0.086 Sum_probs=49.8
Q ss_pred cchHHHhcccCCEEEEEEECCChh---hH---HHHHHHHHHHhcCCCCCCCe-EEEEeeCCCCCCCC-CHH-------HH
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRD---RV---VEARDELHRMLNEDELRDAV-LLVFANKQDLPNAM-NAA-------EI 66 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~~-~iiv~nK~Dl~~~~-~~~-------~~ 66 (110)
...+..+++.+|++|+|+|+++.. ++ .+....+.... ..+.| +++++||+|+.+.. +.+ ++
T Consensus 135 ~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~----~~~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~ 210 (467)
T 1r5b_A 135 VTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLAR----TQGINHLVVVINKMDEPSVQWSEERYKECVDKL 210 (467)
T ss_dssp -------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHH----HTTCSSEEEEEECTTSTTCSSCHHHHHHHHHHH
T ss_pred HHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHH----HcCCCEEEEEEECccCCCccccHHHHHHHHHHH
Confidence 345566788999999999998641 11 11222222221 13566 99999999996432 111 12
Q ss_pred HhhhCCC-ccc-CcceEEEeeecccCCCHHHHH
Q 044598 67 TDKLGLH-SLR-QRHWYIQSTCATSGEGLYEGL 97 (110)
Q Consensus 67 ~~~~~~~-~~~-~~~~~~~~~Sa~~~~~i~~l~ 97 (110)
...+... .+. ....+++++||++|.|+.+++
T Consensus 211 ~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 211 SMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp HHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred HHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 2221100 010 125689999999999998754
No 183
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.73 E-value=2.9e-09 Score=72.54 Aligned_cols=97 Identities=19% Similarity=0.118 Sum_probs=50.4
Q ss_pred hHHHhcccCCEEEEEEECCChh---h---HHHHHHHHHHHhcCCCCCCCe-EEEEeeCCCCCCCCC--H----HHHHhhh
Q 044598 4 LWRHYFQNTQGLIFVVDSNDRD---R---VVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN--A----AEITDKL 70 (110)
Q Consensus 4 ~~~~~~~~~~~~i~v~d~~~~~---~---~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~Dl~~~~~--~----~~~~~~~ 70 (110)
.+..+++.+|++|+|+|+++.. . .......+..... .+.| +++|+||+|+.+... . .++...+
T Consensus 271 ~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~----lgip~iIvviNKiDl~~~~~~~~~~i~~el~~~l 346 (592)
T 3mca_A 271 GMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA----LGISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFL 346 (592)
T ss_dssp ECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH----SSCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH----cCCCeEEEEEeccccccccHHHHHHHHHHHHHHH
Confidence 3445678999999999987421 0 0111112221111 2454 999999999865221 1 1222222
Q ss_pred -CCCcccCcceEEEeeecccCCCHH--------------HHHHHHHHHH
Q 044598 71 -GLHSLRQRHWYIQSTCATSGEGLY--------------EGLDWLSNNI 104 (110)
Q Consensus 71 -~~~~~~~~~~~~~~~Sa~~~~~i~--------------~l~~~l~~~~ 104 (110)
....+....++++++||++|.|+. .+++.|...+
T Consensus 347 ~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~ 395 (592)
T 3mca_A 347 IKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLV 395 (592)
T ss_dssp TTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSC
T ss_pred HHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhc
Confidence 111122235689999999999998 6777765543
No 184
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.72 E-value=1.3e-09 Score=67.49 Aligned_cols=84 Identities=7% Similarity=-0.003 Sum_probs=55.1
Q ss_pred hHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEE
Q 044598 4 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQ 83 (110)
Q Consensus 4 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (110)
.....++++|++++|+|+.+|.+.... .+. + . ++|.++|+||+|+.+....+.....+. ..+.++
T Consensus 14 ~~~~~l~~~D~vl~VvDar~P~~~~~~--~l~-l-----l-~k~~iivlNK~DL~~~~~~~~~~~~~~-----~~g~~v- 78 (262)
T 3cnl_A 14 QIKDLLRLVNTVVEVRDARAPFATSAY--GVD-F-----S-RKETIILLNKVDIADEKTTKKWVEFFK-----KQGKRV- 78 (262)
T ss_dssp HHHHHHTTCSEEEEEEETTSTTTTSCT--TSC-C-----T-TSEEEEEEECGGGSCHHHHHHHHHHHH-----HTTCCE-
T ss_pred HHHHHHhhCCEEEEEeeCCCCCcCcCh--HHH-h-----c-CCCcEEEEECccCCCHHHHHHHHHHHH-----HcCCeE-
Confidence 345578999999999999887543211 111 1 1 789999999999965321122222221 123356
Q ss_pred eeecccCCCHHHHHHHHHH
Q 044598 84 STCATSGEGLYEGLDWLSN 102 (110)
Q Consensus 84 ~~Sa~~~~~i~~l~~~l~~ 102 (110)
.+||+++.|++++++.+..
T Consensus 79 ~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 79 ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp EECCTTSCHHHHHHHHCCC
T ss_pred EEECCCCcCHHHHHHHHHH
Confidence 8999999999999877654
No 185
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.72 E-value=1.2e-09 Score=67.86 Aligned_cols=88 Identities=10% Similarity=0.149 Sum_probs=42.5
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEEeeecccCC
Q 044598 12 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGE 91 (110)
Q Consensus 12 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 91 (110)
+|+++++++.+... +......+.+.+.. ++|+++|+||+|+............+. ......+++++.+||++++
T Consensus 116 ~~~~l~~i~~~~~~-~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~e~~~~~~~i~-~~l~~~~i~v~~~sa~~~~ 189 (274)
T 3t5d_A 116 VQCCLYFIAPSGHG-LKPLDIEFMKRLHE----KVNIIPLIAKADTLTPEECQQFKKQIM-KEIQEHKIKIYEFPETDDE 189 (274)
T ss_dssp CCEEEEEECSCCSS-CCHHHHHHHHHHTT----TSCEEEEESSGGGSCHHHHHHHHHHHH-HHHHHTTCCCCCC------
T ss_pred eeEEEEEecCCCCC-CCHHHHHHHHHHhc----cCCEEEEEeccCCCCHHHHHHHHHHHH-HHHHHcCCeEEcCCCCCCh
Confidence 78999999776421 22222223333322 689999999999854322111111110 0011234567789999999
Q ss_pred CHHHHHHHHHHHHH
Q 044598 92 GLYEGLDWLSNNIA 105 (110)
Q Consensus 92 ~i~~l~~~l~~~~~ 105 (110)
|+++++++|.+.++
T Consensus 190 ~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 190 EENKLVKKIKDRLP 203 (274)
T ss_dssp -----CHHHHHTCS
T ss_pred hHHHHHHHHhcCCC
Confidence 99999999987654
No 186
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.70 E-value=2.3e-07 Score=64.47 Aligned_cols=55 Identities=13% Similarity=0.038 Sum_probs=38.3
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~ 60 (110)
|...+..+++.+|++|+|+|+++...... ...+..... .+.|+++++||+|+...
T Consensus 95 f~~~~~~~l~~aD~aIlVvDa~~gv~~qt-~~~~~~~~~----~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 95 FTIEVERSMRVLDGAVMVYCAVGGVQPQS-ETVWRQANK----YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred hHHHHHHHHHHCCEEEEEEeCCCCCcHHH-HHHHHHHHH----cCCCEEEEEeCCCcccc
Confidence 34567888999999999999986433222 223333221 46899999999998654
No 187
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.70 E-value=5.8e-08 Score=67.06 Aligned_cols=52 Identities=12% Similarity=0.019 Sum_probs=36.5
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCC
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 58 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 58 (110)
+..+..+++.+|++++|+|+++.... ....++..... .+.|+++++||+|+.
T Consensus 88 ~~~~~~~l~~ad~~ilVvD~~~g~~~-qt~~~~~~~~~----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 88 VGEIRGALEAADAALVAVSAEAGVQV-GTERAWTVAER----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTCSCH-HHHHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred HHHHHHHHhhcCcEEEEEcCCcccch-hHHHHHHHHHH----ccCCEEEEecCCchh
Confidence 45677889999999999998753222 12233333322 368999999999987
No 188
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.69 E-value=2.7e-07 Score=64.02 Aligned_cols=55 Identities=16% Similarity=0.123 Sum_probs=39.1
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~ 60 (110)
|...+..+++.+|++|+|+|+++....... ..+..+.. .+.|+++|+||+|+...
T Consensus 88 f~~~~~~~l~~aD~~llVvDa~~g~~~~~~-~~~~~~~~----~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 88 FTVEVERSLRVLDGAVTVLDAQSGVEPQTE-TVWRQATT----YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp CCHHHHHHHHHCSEEEEEEETTTBSCHHHH-HHHHHHHH----TTCCEEEEEECTTSTTC
T ss_pred hHHHHHHHHHHCCEEEEEECCCCCCcHHHH-HHHHHHHH----cCCCEEEEEECCCcccc
Confidence 345677889999999999999875444332 22333322 36899999999999764
No 189
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.69 E-value=1.8e-08 Score=66.81 Aligned_cols=89 Identities=11% Similarity=0.078 Sum_probs=51.8
Q ss_pred chHHHhcccCCEEEEEEECCChhhHH-------HHHHHHHHHhcCCCCCCC-eEEEEeeCCCCCCCCCH--H----HHHh
Q 044598 3 PLWRHYFQNTQGLIFVVDSNDRDRVV-------EARDELHRMLNEDELRDA-VLLVFANKQDLPNAMNA--A----EITD 68 (110)
Q Consensus 3 ~~~~~~~~~~~~~i~v~d~~~~~~~~-------~~~~~~~~~~~~~~~~~~-~~iiv~nK~Dl~~~~~~--~----~~~~ 68 (110)
..+..++..+|++|+|+|+++.. .. +....+.... . .+. ++++++||+|+.+.... + ++..
T Consensus 100 ~~~~~~~~~aD~~ilVvda~~g~-~~~sf~~~~qt~~~~~~~~-~---~~v~~iivviNK~Dl~~~~~~~~~~i~~~~~~ 174 (458)
T 1f60_A 100 KNMITGTSQADCAILIIAGGVGE-FEAGISKDGQTREHALLAF-T---LGVRQLIVAVNKMDSVKWDESRFQEIVKETSN 174 (458)
T ss_dssp HHHHHSSSCCSEEEEEEECSHHH-HHHHTCTTSHHHHHHHHHH-H---TTCCEEEEEEECGGGGTTCHHHHHHHHHHHHH
T ss_pred HHHHhhhhhCCEEEEEEeCCcCc-cccccCcchhHHHHHHHHH-H---cCCCeEEEEEEccccccCCHHHHHHHHHHHHH
Confidence 45667889999999999998542 11 2222222221 1 344 49999999999632111 1 1111
Q ss_pred hhCCCcccCcceEEEeeecccCCCHHHH
Q 044598 69 KLGLHSLRQRHWYIQSTCATSGEGLYEG 96 (110)
Q Consensus 69 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 96 (110)
.+....+.....+++++||++|.|+.++
T Consensus 175 ~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 175 FIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp HHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred HHHHcCCCccCceEEEeecccCcCcccc
Confidence 1110001112367999999999998743
No 190
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.66 E-value=3e-08 Score=59.42 Aligned_cols=84 Identities=18% Similarity=0.209 Sum_probs=53.5
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC--CCHHHHHhhhCCCcccCcceEEEeeecc
Q 044598 11 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCAT 88 (110)
Q Consensus 11 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 88 (110)
.++.+++|+|++..... ...+ ... .+.|.++|+||+|+.+. ...+++...+.. .+...+++++||+
T Consensus 129 ~~~~~i~vvd~~~~~~~--~~~~-~~~------~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~---~~~~~~i~~~Sa~ 196 (221)
T 2wsm_A 129 GENYRVVMVSVTEGDDV--VEKH-PEI------FRVADLIVINKVALAEAVGADVEKMKADAKL---INPRAKIIEMDLK 196 (221)
T ss_dssp SCSEEEEEEEGGGCTTH--HHHC-HHH------HHTCSEEEEECGGGHHHHTCCHHHHHHHHHH---HCTTSEEEECBTT
T ss_pred ccCcEEEEEeCCCcchh--hhhh-hhh------hhcCCEEEEecccCCcchhhHHHHHHHHHHH---hCCCCeEEEeecC
Confidence 56788889998753221 1111 111 24789999999998532 233333333210 1234578999999
Q ss_pred cCCCHHHHHHHHHHHHHh
Q 044598 89 SGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 89 ~~~~i~~l~~~l~~~~~~ 106 (110)
+|.|++++++++.+.+..
T Consensus 197 ~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 197 TGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp TTBTHHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999987754
No 191
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.64 E-value=4.8e-08 Score=57.99 Aligned_cols=89 Identities=12% Similarity=0.141 Sum_probs=56.1
Q ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCH----HHHHhhhCCCcccCcceEEEee
Q 044598 10 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AEITDKLGLHSLRQRHWYIQST 85 (110)
Q Consensus 10 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 85 (110)
..++++++++|++.+.+... ..+...+.. .+.|.+++.||+|+...... ..+...+. .....+.++++
T Consensus 107 ~~~~~~~~v~d~~~~~~~~~--~~~~~~~~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 178 (210)
T 1pui_A 107 QSLQGLVVLMDIRHPLKDLD--QQMIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVL---AFNGDVQVETF 178 (210)
T ss_dssp TTEEEEEEEEETTSCCCHHH--HHHHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHG---GGCSCEEEEEC
T ss_pred hcccEEEEEEECCCCCchhH--HHHHHHHHH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHH---hcCCCCceEEE
Confidence 47899999999986543321 112222222 46889999999998543111 11222211 01224578899
Q ss_pred ecccCCCHHHHHHHHHHHHHh
Q 044598 86 CATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 86 Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
||+++.|++++++++.+.+..
T Consensus 179 Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 179 SSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp BTTTTBSHHHHHHHHHHHHC-
T ss_pred eecCCCCHHHHHHHHHHHHhh
Confidence 999999999999999887643
No 192
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.63 E-value=6.8e-09 Score=65.61 Aligned_cols=88 Identities=17% Similarity=0.160 Sum_probs=54.9
Q ss_pred hHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCC----HHHHHhhhCCCcccCcc
Q 044598 4 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----AAEITDKLGLHSLRQRH 79 (110)
Q Consensus 4 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~ 79 (110)
+++....++|.+++|+|+.+|..-.. .+.+++......++|.++|+||+|+.+... .+.+...+ ...+
T Consensus 79 l~R~~~anvD~v~~V~~~~~p~~~~~---~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y-----~~~g 150 (307)
T 1t9h_A 79 LIRPPICNVDQAVLVFSAVQPSFSTA---LLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDY-----RNIG 150 (307)
T ss_dssp ETTTTEECCCEEEEEEESTTTTCCHH---HHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHH-----HHHT
T ss_pred hhHHHHHhCCEEEEEEeCCCCCCCHH---HHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHH-----HhCC
Confidence 34456889999999999987643221 233333211125789999999999975422 12222221 1223
Q ss_pred eEEEeeecccCCCHHHHHHH
Q 044598 80 WYIQSTCATSGEGLYEGLDW 99 (110)
Q Consensus 80 ~~~~~~Sa~~~~~i~~l~~~ 99 (110)
.+++.+||.++.|+++++..
T Consensus 151 ~~v~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 151 YDVYLTSSKDQDSLADIIPH 170 (307)
T ss_dssp CCEEECCHHHHTTCTTTGGG
T ss_pred CeEEEEecCCCCCHHHHHhh
Confidence 57888999999998876653
No 193
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.61 E-value=8.3e-09 Score=66.53 Aligned_cols=84 Identities=7% Similarity=0.081 Sum_probs=41.1
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHH----HHHhhhCCCcccCcceEEEeeecc
Q 044598 13 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA----EITDKLGLHSLRQRHWYIQSTCAT 88 (110)
Q Consensus 13 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~----~~~~~~~~~~~~~~~~~~~~~Sa~ 88 (110)
++++|+++.+. .++......+...+. .+.|+++|+||+|+....... ++... ....+++++++||+
T Consensus 147 ~~~vy~I~~~~-~~l~~~d~~~~~~l~----~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~-----~~~~~i~~~~~Sa~ 216 (361)
T 2qag_A 147 HCCFYFISPFG-HGLKPLDVAFMKAIH----NKVNIVPVIAKADTLTLKERERLKKRILDE-----IEEHNIKIYHLPDA 216 (361)
T ss_dssp CEEEEEECSSS-SSCCHHHHHHHHHTC----S-SCEEEEEECCSSSCHHHHHHHHHHHHHH-----TTCC-CCSCCCC--
T ss_pred EEEEEEEecCC-CCcchhHHHHHHHhc----cCCCEEEEEECCCCCCHHHHHHHHHHHHHH-----HHHCCCCEEeCCCc
Confidence 45777776532 233333322323222 468999999999986432111 12121 12345678899999
Q ss_pred cCCCHHHHHHHHHHHHHhh
Q 044598 89 SGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 89 ~~~~i~~l~~~l~~~~~~~ 107 (110)
++.| ++.+.++.+.+...
T Consensus 217 ~~~~-~e~~~~l~~~i~~~ 234 (361)
T 2qag_A 217 ESDE-DEDFKEQTRLLKAS 234 (361)
T ss_dssp --------CHHHHHHHHHT
T ss_pred CCCc-chhHHHHHHHHHhc
Confidence 9998 77777777776543
No 194
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.59 E-value=4.8e-08 Score=68.21 Aligned_cols=94 Identities=12% Similarity=0.109 Sum_probs=57.4
Q ss_pred hHHHhc-ccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCH-HHHHhhhCCCcccCcceE
Q 044598 4 LWRHYF-QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRQRHWY 81 (110)
Q Consensus 4 ~~~~~~-~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~ 81 (110)
+...|+ +.+|++++|+|++......+... +...+.. .+.|+++|+||+|+.+.... ..+... ..........+
T Consensus 179 lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~-ll~~L~~---~g~pvIlVlNKiDlv~~~~~~~~il~~-~~~~l~lg~~~ 253 (772)
T 3zvr_A 179 MLMQFVTKENCLILAVSPANSDLANSDALK-IAKEVDP---QGQRTIGVITKLDLMDEGTDARDVLEN-KLLPLRRGYIG 253 (772)
T ss_dssp HHHHHHTSTTEEEEEEEETTSCSSSCHHHH-HHHHHCT---TCSSEEEEEECTTSSCTTCCSHHHHTT-CSSCCSSCEEE
T ss_pred HHHHHHhcCCcEEEEEEcCCCCcchhHHHH-HHHHHHh---cCCCEEEEEeCcccCCcchhhHHHHHH-HhhhhhccCCc
Confidence 344455 57899999999986422222112 2222322 46899999999998654321 112111 11001112347
Q ss_pred EEeeecccCCCHHHHHHHHHH
Q 044598 82 IQSTCATSGEGLYEGLDWLSN 102 (110)
Q Consensus 82 ~~~~Sa~~~~~i~~l~~~l~~ 102 (110)
++.+||++|.|++++++.+.+
T Consensus 254 VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 254 VVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp CCCCCCEESSSSEEHHHHHHH
T ss_pred eEEecccccccchhHHHHHHH
Confidence 889999999999999998876
No 195
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.58 E-value=2.4e-08 Score=64.11 Aligned_cols=95 Identities=15% Similarity=0.118 Sum_probs=54.2
Q ss_pred chHHHhcccCCEEE-EEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCC-HHHHHhhhCCCcccCcce
Q 044598 3 PLWRHYFQNTQGLI-FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHW 80 (110)
Q Consensus 3 ~~~~~~~~~~~~~i-~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~ 80 (110)
.++..|+++++.++ +|+|++....-.+...++.. +.. .+.|+++|+||+|+.+... ....... ..........
T Consensus 158 ~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~-~~~---~~~~~i~V~NK~Dl~~~~~~~~~~~~~-~~~~l~~~~~ 232 (353)
T 2x2e_A 158 DMLMQFVTKENCLILAVSPANSDLANSDALKVAKE-VDP---QGQRTIGVITKLDLMDEGTDARDVLEN-KLLPLRRGYI 232 (353)
T ss_dssp HHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHH-HCT---TCTTEEEEEECGGGSCTTCCCHHHHTT-CSSCCTTCEE
T ss_pred HHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHH-hCc---CCCceEEEeccccccCcchhHHHHHhC-CcccccCCce
Confidence 35667887666555 46666542111111122222 221 4689999999999865422 1121111 0100111224
Q ss_pred EEEeeecccCCCHHHHHHHHHH
Q 044598 81 YIQSTCATSGEGLYEGLDWLSN 102 (110)
Q Consensus 81 ~~~~~Sa~~~~~i~~l~~~l~~ 102 (110)
+++.+||+++.|++++++++.+
T Consensus 233 ~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 233 GVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp ECCCCCHHHHHTTCCHHHHHHH
T ss_pred EEEeCCcccccccccHHHHHHH
Confidence 6889999999999999998876
No 196
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.57 E-value=2.2e-07 Score=59.70 Aligned_cols=90 Identities=19% Similarity=0.150 Sum_probs=52.2
Q ss_pred HhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCC----HHHHHhhhCCCcc--cCcce
Q 044598 7 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----AAEITDKLGLHSL--RQRHW 80 (110)
Q Consensus 7 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~----~~~~~~~~~~~~~--~~~~~ 80 (110)
...+.+|++++|+|++....... +.. .....|.++|+||+|+.+... ...+...+..... .....
T Consensus 183 ~l~~~~d~vl~V~d~~~~~~~~~----i~~-----~il~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~ 253 (349)
T 2www_A 183 AVADMVDMFVLLLPPAGGDELQG----IKR-----GIIEMADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKP 253 (349)
T ss_dssp HHHTTCSEEEEEECCC---------------------CCSCSEEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCC
T ss_pred hHHhhCCEEEEEEcCCcchhHHH----hHH-----HHHhcCCEEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCc
Confidence 45678999999999875422111 111 112467899999999853211 1112221211000 01134
Q ss_pred EEEeeecccCCCHHHHHHHHHHHHH
Q 044598 81 YIQSTCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 81 ~~~~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
+++.+||++|+|+++++++|.+.+.
T Consensus 254 ~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 254 KVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHHHHH
Confidence 7889999999999999999988764
No 197
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.49 E-value=1.5e-07 Score=60.29 Aligned_cols=89 Identities=16% Similarity=0.103 Sum_probs=52.0
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHH----HHHhhhCC-Ccc-cCcceE
Q 044598 8 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA----EITDKLGL-HSL-RQRHWY 81 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~----~~~~~~~~-~~~-~~~~~~ 81 (110)
..+.+|++++|+|++...... .+.. ...+.|.++|+||+|+.+..... ++...++. ... .....+
T Consensus 166 ~~~~aD~vl~Vvd~~~~~~~~----~l~~-----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 236 (341)
T 2p67_A 166 VARMVDCFISLQIAGGGDDLQ----GIKK-----GLMEVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPR 236 (341)
T ss_dssp HHTTCSEEEEEECC------C----CCCH-----HHHHHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCE
T ss_pred HHHhCCEEEEEEeCCccHHHH----HHHH-----hhhcccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCc
Confidence 457899999999986432211 0000 00146789999999986432111 12221111 000 011347
Q ss_pred EEeeecccCCCHHHHHHHHHHHHH
Q 044598 82 IQSTCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 82 ~~~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
++++||++|.|++++++++.+.+.
T Consensus 237 vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 237 VLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp EEECBGGGTBSHHHHHHHHHHHHH
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHH
Confidence 889999999999999999988654
No 198
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.47 E-value=2.2e-07 Score=56.94 Aligned_cols=94 Identities=13% Similarity=0.147 Sum_probs=53.3
Q ss_pred cccCCEEEEEEECCChhhH-HHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHH--------HhhhCCCcccCcc
Q 044598 9 FQNTQGLIFVVDSNDRDRV-VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEI--------TDKLGLHSLRQRH 79 (110)
Q Consensus 9 ~~~~~~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~--------~~~~~~~~~~~~~ 79 (110)
.+++|++|+|+|+++.... .....++.+.... ...+.|++++.||.|+.+....+.+ ..... .+ ...
T Consensus 103 ~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~-~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~--~~-g~~ 178 (247)
T 3lxw_A 103 APGPHALLLVTQLGRFTAQDQQAVRQVRDMFGE-DVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVA--EC-GGR 178 (247)
T ss_dssp TTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCG-GGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHH--HT-TTC
T ss_pred CCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhCh-hhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHH--Hc-CCe
Confidence 3899999999998753221 1222344443321 2236899999999999654211111 11110 00 112
Q ss_pred eEEEeeec---ccCCCHHHHHHHHHHHHHh
Q 044598 80 WYIQSTCA---TSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 80 ~~~~~~Sa---~~~~~i~~l~~~l~~~~~~ 106 (110)
+.++..++ .++.|+.++++.+.+.+..
T Consensus 179 ~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 179 VCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 22333333 2368999999999888764
No 199
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.45 E-value=8.4e-08 Score=61.72 Aligned_cols=90 Identities=14% Similarity=0.168 Sum_probs=52.7
Q ss_pred cchHHHhcccCCEEEEEEECCChhhH-HHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCC-HHHHHhhhCCCcccCcc
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRV-VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRH 79 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~ 79 (110)
+.+...|++++|++|+|+|+.+.... .....++.. + ...+.|+++|+||+|+.+... ........ .....
T Consensus 163 ~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~-~---~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~----~~~~~ 234 (360)
T 3t34_A 163 ENMVRSYIEKPNCIILAISPANQDLATSDAIKISRE-V---DPSGDRTFGVLTKIDLMDKGTDAVEILEGR----SFKLK 234 (360)
T ss_dssp HHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHH-S---CTTCTTEEEEEECGGGCCTTCCSHHHHTTS----SSCCS
T ss_pred HHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHH-h---cccCCCEEEEEeCCccCCCcccHHHHHcCc----ccccc
Confidence 34677899999999999987543222 121222222 2 224689999999999865322 11111111 11233
Q ss_pred eEEEeeecccCCCHHHHHHH
Q 044598 80 WYIQSTCATSGEGLYEGLDW 99 (110)
Q Consensus 80 ~~~~~~Sa~~~~~i~~l~~~ 99 (110)
.+++.+|++++.++++.+..
T Consensus 235 ~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 235 YPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp SCCEEECCCCHHHHHTTCCH
T ss_pred CCeEEEEECChHHhccCCCH
Confidence 46778888887777655433
No 200
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.43 E-value=4e-06 Score=56.85 Aligned_cols=52 Identities=15% Similarity=0.186 Sum_probs=35.6
Q ss_pred HHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC
Q 044598 5 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 61 (110)
Q Consensus 5 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~ 61 (110)
....++-+|++|+|+|+.+--. .+....|..+.+ .+.|.++++||+|.....
T Consensus 117 v~raL~~~DgAvlVvda~~GV~-~qT~~v~~~a~~----~~lp~i~fINK~Dr~~ad 168 (548)
T 3vqt_A 117 TYRVLTAVDSALVVIDAAKGVE-AQTRKLMDVCRM----RATPVMTFVNKMDREALH 168 (548)
T ss_dssp HHHHHHSCSEEEEEEETTTBSC-HHHHHHHHHHHH----TTCCEEEEEECTTSCCCC
T ss_pred HHHHHHhcCceEEEeecCCCcc-cccHHHHHHHHH----hCCceEEEEecccchhcc
Confidence 3456788999999999985322 222333443332 579999999999987653
No 201
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.43 E-value=1.3e-07 Score=56.76 Aligned_cols=59 Identities=15% Similarity=0.211 Sum_probs=40.6
Q ss_pred CCeEEEEeeCCCCCCC--CCHHHHHhhhCCCcccCcceEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 45 DAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 45 ~~~~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
+.|.++|+||+|+.+. ...+++...+.. .....+++++||++|.|++++++++.+.+..
T Consensus 164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 164 KTADLIVINKIDLADAVGADIKKMENDAKR---INPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp TTCSEEEEECGGGHHHHTCCHHHHHHHHHH---HCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hcCCEEEEeccccCchhHHHHHHHHHHHHH---hCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 3567999999998542 223333322210 1234578999999999999999999887754
No 202
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.29 E-value=2.2e-06 Score=55.24 Aligned_cols=86 Identities=16% Similarity=0.137 Sum_probs=50.4
Q ss_pred hcccCCEEEEEEECCChhh-HHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEEeee
Q 044598 8 YFQNTQGLIFVVDSNDRDR-VVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTC 86 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 86 (110)
...++|.+++|.. ..|.. ... +.+++......++|.++|+||+|+.+....+....... .+...+++++.+|
T Consensus 127 i~anvD~v~iv~a-~~P~~~~~~----i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~--~y~~~G~~v~~~S 199 (358)
T 2rcn_A 127 IAANIDQIVIVSA-ILPELSLNI----IDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMD--IYRNIGYRVLMVS 199 (358)
T ss_dssp EEECCCEEEEEEE-STTTCCHHH----HHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHH--HHHTTTCCEEECB
T ss_pred HHhcCCEEEEEEe-CCCCCCHHH----HHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHH--HHHhCCCcEEEEe
Confidence 3678999997754 44532 222 23332111114678899999999965321111212111 1223445788999
Q ss_pred cccCCCHHHHHHHH
Q 044598 87 ATSGEGLYEGLDWL 100 (110)
Q Consensus 87 a~~~~~i~~l~~~l 100 (110)
|.++.|++++...+
T Consensus 200 a~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 200 SHTQDGLKPLEEAL 213 (358)
T ss_dssp TTTTBTHHHHHHHH
T ss_pred cCCCcCHHHHHHhc
Confidence 99999999887654
No 203
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.25 E-value=1.6e-06 Score=52.60 Aligned_cols=96 Identities=11% Similarity=0.078 Sum_probs=49.8
Q ss_pred hHHHhcccCCEEEEEEECCChhhH-HHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHH--------HHHhhhCCCc
Q 044598 4 LWRHYFQNTQGLIFVVDSNDRDRV-VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA--------EITDKLGLHS 74 (110)
Q Consensus 4 ~~~~~~~~~~~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~--------~~~~~~~~~~ 74 (110)
.+..+++++|++|+|+|+++.... .....++....... ...|+++|+||+|+.+....+ .+.....
T Consensus 105 ~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~--- 179 (239)
T 3lxx_A 105 CILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMD--- 179 (239)
T ss_dssp HHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHH---
T ss_pred HHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHH---
Confidence 344566788999999998653221 11112222222110 246899999999986443211 1111110
Q ss_pred ccCcceEEEeeecc-----cCCCHHHHHHHHHHHHHh
Q 044598 75 LRQRHWYIQSTCAT-----SGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 75 ~~~~~~~~~~~Sa~-----~~~~i~~l~~~l~~~~~~ 106 (110)
..+..++.+++. ++.++.+++..+.+.+..
T Consensus 180 --~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 180 --IFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp --HHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 011123344433 346899999888877654
No 204
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.03 E-value=4.4e-06 Score=57.57 Aligned_cols=52 Identities=17% Similarity=0.205 Sum_probs=34.3
Q ss_pred HHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCC
Q 044598 5 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 61 (110)
Q Consensus 5 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~ 61 (110)
....++-+|++|+|+|+.+--. .+....|..+.+ .+.|.+++.||+|.....
T Consensus 84 v~raL~~~DgavlVVDa~~GV~-~qT~~v~~~a~~----~~lp~i~~INKmDr~~a~ 135 (638)
T 3j25_A 84 VYRSLSVLDGAILLISAKDGVQ-AQTRILFHALRK----MGIPTIFFINKIDQNGID 135 (638)
T ss_dssp HHHHHTTCSEEECCEESSCTTC-SHHHHHHHHHHH----HTCSCEECCEECCSSSCC
T ss_pred HHHHHHHhCEEEEEEeCCCCCc-HHHHHHHHHHHH----cCCCeEEEEeccccccCC
Confidence 3456788999999999975211 112233333322 368899999999986553
No 205
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.03 E-value=1.9e-06 Score=58.39 Aligned_cols=54 Identities=15% Similarity=0.274 Sum_probs=37.5
Q ss_pred chHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC
Q 044598 3 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60 (110)
Q Consensus 3 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~ 60 (110)
..+..+++++|++++|+|+++.........++..+ .. .+.|+++|+||+|+.+.
T Consensus 180 ~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l-~~---~~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 180 AVLRWFAERVDLIILLFDAHKLEISDEFSEAIGAL-RG---HEDKIRVVLNKADMVET 233 (550)
T ss_dssp HHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHT-TT---CGGGEEEEEECGGGSCH
T ss_pred HHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHH-Hh---cCCCEEEEEECCCccCH
Confidence 45677899999999999997643233333344333 22 35789999999998643
No 206
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.02 E-value=3.9e-07 Score=59.52 Aligned_cols=47 Identities=17% Similarity=0.242 Sum_probs=29.7
Q ss_pred CCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEEeeecccCCCHHHH
Q 044598 45 DAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 96 (110)
Q Consensus 45 ~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 96 (110)
.+|+++|+||+|+........+.+.. ...+.+++++||+.+.|+.++
T Consensus 214 ~kP~i~v~NK~D~~~~~~l~~l~~~~-----~~~~~~vv~iSA~~e~~l~~L 260 (397)
T 1wxq_A 214 NKPMVIAANKADAASDEQIKRLVREE-----EKRGYIVIPTSAAAELTLRKA 260 (397)
T ss_dssp HSCEEEEEECGGGSCHHHHHHHHHHH-----HHTTCEEEEECHHHHHHHHSC
T ss_pred CCCEEEEEeCccccchHHHHHHHHHH-----hhcCCcEEEEeccchhhHHHH
Confidence 48999999999986211111222211 111347889999999888764
No 207
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.96 E-value=1.3e-06 Score=55.05 Aligned_cols=57 Identities=11% Similarity=0.051 Sum_probs=30.6
Q ss_pred CCeEEEEeeCCCCCCCCCH----HHHHhhhCCCcccCcceEEEeeecccCCCHHHHHHHHHHHHHhh
Q 044598 45 DAVLLVFANKQDLPNAMNA----AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 107 (110)
Q Consensus 45 ~~~~iiv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 107 (110)
..|+++|+||.|+...... +++.+. ....+++++++||+++ |++++|.++.+.+...
T Consensus 155 ~~~iilV~~K~Dl~~~~e~~~~~~~~~~~-----~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~ 215 (301)
T 2qnr_A 155 KVNIVPVIAKADTLTLKERERLKKRILDE-----IEEHNIKIYHLPDAES-DEDEDFKEQTRLLKAS 215 (301)
T ss_dssp TSCEEEEECCGGGSCHHHHHHHHHHHHHH-----HHHTTCCCCCCC----------CHHHHHHHHTT
T ss_pred cCCEEEEEEeCCCCCHHHHHHHHHHHHHH-----HHHcCCeEEecCCccc-cccHHHHHHHHHhhcC
Confidence 5789999999998642111 111111 1123457889999999 9999999999887643
No 208
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.94 E-value=2.5e-05 Score=49.97 Aligned_cols=89 Identities=12% Similarity=0.088 Sum_probs=50.0
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCC-----HHHHHhhhCCCccc--Ccce
Q 044598 8 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-----AAEITDKLGLHSLR--QRHW 80 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~-----~~~~~~~~~~~~~~--~~~~ 80 (110)
..+.+|.+++|+|+......... .. .....+.++++||+|+..... .+.+...+.+.... ....
T Consensus 165 v~~~~d~vl~v~d~~~~~~~~~i--------~~-~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~ 235 (337)
T 2qm8_A 165 VADLTDFFLVLMLPGAGDELQGI--------KK-GIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTP 235 (337)
T ss_dssp HHTTSSEEEEEECSCC------C--------CT-THHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCC
T ss_pred HHhhCCEEEEEEcCCCcccHHHH--------HH-HHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCC
Confidence 34689999999997643211100 00 001245677889999743211 12222222211000 0123
Q ss_pred EEEeeecccCCCHHHHHHHHHHHHH
Q 044598 81 YIQSTCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 81 ~~~~~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
+++.+||+++.|++++++.+.+...
T Consensus 236 ~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 236 PVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp CEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 6788999999999999999988654
No 209
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=97.89 E-value=1.4e-05 Score=56.70 Aligned_cols=53 Identities=23% Similarity=0.184 Sum_probs=39.0
Q ss_pred CcchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCC
Q 044598 1 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 58 (110)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 58 (110)
|...+..+++.+|++|+|+|+++..+...... +..... .+.|+++++||+|+.
T Consensus 111 f~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~-~~~~~~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 111 FSSEVTAALRVTDGALVVVDTIEGVCVQTETV-LRQALG----ERIKPVVVINKVDRA 163 (842)
T ss_dssp SCHHHHHHHHTCSEEEEEEETTTBSCHHHHHH-HHHHHH----TTCEEEEEEECHHHH
T ss_pred hHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHH-HHHHHH----cCCCeEEEEECCCcc
Confidence 45678889999999999999987655444332 222222 468999999999985
No 210
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=97.87 E-value=0.00013 Score=50.92 Aligned_cols=51 Identities=14% Similarity=0.127 Sum_probs=34.2
Q ss_pred HHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC
Q 044598 5 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 60 (110)
Q Consensus 5 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~ 60 (110)
....++-+|++|+|+|+.+--. .+....|....+ .+.|.+++.||+|....
T Consensus 102 v~~aLr~~DgavlvVDaveGV~-~qT~~v~~~a~~----~~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 102 VERSLRVLDGAVVVFCGTSGVE-PQSETVWRQANK----YGVPRIVYVNKMDRQGA 152 (709)
T ss_dssp HHHHHHHCSEEEEEEETTTCSC-HHHHHHHHHHHH----HTCCEEEEEECSSSTTC
T ss_pred HHHHHHHhCeEEEEEECCCCCc-hhHHHHHHHHHH----cCCCeEEEEccccccCc
Confidence 3456788999999999975211 122233444332 37899999999998654
No 211
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.64 E-value=3.6e-06 Score=55.33 Aligned_cols=91 Identities=7% Similarity=0.148 Sum_probs=34.5
Q ss_pred hcccCC--EEEEEEECCChhhHHHHH-HHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEEe
Q 044598 8 YFQNTQ--GLIFVVDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQS 84 (110)
Q Consensus 8 ~~~~~~--~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (110)
++.+++ +++|+.+++. .++.... .++..+ . .+.|+++|+||+|+.............. ......++++++
T Consensus 133 l~~d~~~~vlL~ldePt~-~~L~~~d~~~lk~L-~----~~v~iIlVinK~Dll~~~ev~~~k~~i~-~~~~~~~i~~~~ 205 (418)
T 2qag_C 133 QMPDNRVQCCLYFIAPSG-HGLKPLDIEFMKRL-H----EKVNIIPLIAKADTLTPEECQQFKKQIM-KEIQEHKIKIYE 205 (418)
T ss_dssp CCCCC-CCEEEEECCC-C-CSCCHHHHHHHHHH-T----TTSEEEEEEESTTSSCHHHHHHHHHHHH-HHHHHHTCCCCC
T ss_pred hccCCCeeEEEEEecCcc-cCCCHHHHHHHHHH-h----ccCcEEEEEEcccCccHHHHHHHHHHHH-HHHHHcCCeEEe
Confidence 444544 4666665541 1222222 344443 2 3689999999999854221111111100 001122446778
Q ss_pred eecccCCCHHHHHHHHHHHHH
Q 044598 85 TCATSGEGLYEGLDWLSNNIA 105 (110)
Q Consensus 85 ~Sa~~~~~i~~l~~~l~~~~~ 105 (110)
+||+++.++++++..+...++
T Consensus 206 ~sa~~~~~v~~~~~~l~~~iP 226 (418)
T 2qag_C 206 FPETDDEEENKLVKKIKDRLP 226 (418)
T ss_dssp CC-----------------CC
T ss_pred CCCCCCcCHHHHHHHHHhhCC
Confidence 999999999988887776543
No 212
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=97.40 E-value=0.00014 Score=44.73 Aligned_cols=47 Identities=11% Similarity=0.055 Sum_probs=27.8
Q ss_pred cCCEEEEEEECCChhhHHHH-HHHHHHHhcC-CCCCCCeEEEEeeCCCCC
Q 044598 11 NTQGLIFVVDSNDRDRVVEA-RDELHRMLNE-DELRDAVLLVFANKQDLP 58 (110)
Q Consensus 11 ~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~iiv~nK~Dl~ 58 (110)
++|++++|+|.+... +... ..++..+... ......|+++|+||+|+.
T Consensus 116 ~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 116 TIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS 164 (262)
T ss_dssp EECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred CCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence 789999999876532 2211 1233222211 111135899999999985
No 213
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=97.29 E-value=0.00024 Score=43.90 Aligned_cols=50 Identities=10% Similarity=-0.036 Sum_probs=29.5
Q ss_pred cccCCEEEEEEECCChhhHHHH-HHHHHHHhcCCC-CCCCeEEEEeeCCCCCC
Q 044598 9 FQNTQGLIFVVDSNDRDRVVEA-RDELHRMLNEDE-LRDAVLLVFANKQDLPN 59 (110)
Q Consensus 9 ~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~iiv~nK~Dl~~ 59 (110)
.+++|+++||+|.+.. ++... ..++..+..... ....|+++|+||+|+.+
T Consensus 117 ~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~ 168 (270)
T 1h65_A 117 DKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 168 (270)
T ss_dssp TCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred cCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence 3479999999987642 22222 233333321100 01269999999999864
No 214
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=97.12 E-value=0.0011 Score=42.92 Aligned_cols=18 Identities=6% Similarity=0.032 Sum_probs=15.3
Q ss_pred HHhcccCCEEEEEEECCC
Q 044598 6 RHYFQNTQGLIFVVDSND 23 (110)
Q Consensus 6 ~~~~~~~~~~i~v~d~~~ 23 (110)
..++++||++++|+|+++
T Consensus 94 l~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 94 LAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp HHHHHTCSEEEEEEECCC
T ss_pred HHHHHhCCEEEEEEECCC
Confidence 346899999999999975
No 215
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.82 E-value=0.015 Score=37.65 Aligned_cols=18 Identities=17% Similarity=0.137 Sum_probs=15.4
Q ss_pred HHhcccCCEEEEEEECCC
Q 044598 6 RHYFQNTQGLIFVVDSND 23 (110)
Q Consensus 6 ~~~~~~~~~~i~v~d~~~ 23 (110)
..+++++|++++|+|+++
T Consensus 91 l~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 91 LANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHHHTCSEEEEEEECSC
T ss_pred HHHHHhcCeEEEEEecCC
Confidence 346899999999999985
No 216
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=95.83 E-value=0.012 Score=38.35 Aligned_cols=48 Identities=15% Similarity=0.108 Sum_probs=31.6
Q ss_pred hcccCCEEEEEEECCChhh-HHHHHHHHHHHhcCCCCCCCeEEEEeeCCCC
Q 044598 8 YFQNTQGLIFVVDSNDRDR-VVEARDELHRMLNEDELRDAVLLVFANKQDL 57 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl 57 (110)
..+.||++++|+|+++|.. .......+... ...+..+|.+++.||.|.
T Consensus 146 ~i~~ad~il~vvD~~~p~~~~~~i~~EL~~~--~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 146 VARTCNLLFIILDVNKPLHHKQIIEKELEGV--GIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp HHHHCSEEEEEEETTSHHHHHHHHHHHHHHT--TEEETCCCCCEEEEECSS
T ss_pred HHHhcCccccccccCccHHHHHHHHHHHHHh--hHhhccCChhhhhhHhhh
Confidence 4688999999999998632 22222233222 112346788999999996
No 217
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.76 E-value=0.088 Score=35.64 Aligned_cols=85 Identities=9% Similarity=0.042 Sum_probs=48.0
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeE-EEEeeCCCCCCCCCH-HHHHhhhCCCc--------cc--Cc
Q 044598 11 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVL-LVFANKQDLPNAMNA-AEITDKLGLHS--------LR--QR 78 (110)
Q Consensus 11 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-iiv~nK~Dl~~~~~~-~~~~~~~~~~~--------~~--~~ 78 (110)
.+|.+++|+|+....... .....+. . ..|+ .+|+||+|....... -.+...++.+- .. ..
T Consensus 213 ~pd~vllVvDa~~g~~~~---~~a~~~~-~----~~~i~gvVlNK~D~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~ 284 (504)
T 2j37_W 213 QPDNIVYVMDASIGQACE---AQAKAFK-D----KVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEP 284 (504)
T ss_dssp CCSEEEEEEETTCCTTHH---HHHHHHH-H----HHCCCCEEEECTTSCCCCTHHHHHHHHHCCCEEEEECSSSTTCEEC
T ss_pred cCceEEEEEeccccccHH---HHHHHHH-h----hcCceEEEEeCCccccchHHHHHHHHHhCCCeEEeccccchhhhhc
Confidence 789999999987542211 1111111 1 2564 899999998643321 12222333221 00 00
Q ss_pred ceEEEeeecccCCC-HHHHHHHHHHH
Q 044598 79 HWYIQSTCATSGEG-LYEGLDWLSNN 103 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~-i~~l~~~l~~~ 103 (110)
..+...+|+..|.| +.++++++.+.
T Consensus 285 f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 285 FKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred cCcceeeehhcCCCcHHHHHHHHHHH
Confidence 11233579999999 99999888765
No 218
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=91.31 E-value=0.96 Score=29.51 Aligned_cols=51 Identities=16% Similarity=0.012 Sum_probs=35.5
Q ss_pred CCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEEeeecccCCCHHHHHHHHHHHH
Q 044598 44 RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 104 (110)
Q Consensus 44 ~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 104 (110)
...|.+++.||+|.. ..+++...... ...+++|+..+.|++.+...+.+.+
T Consensus 248 ~~~p~i~v~nKid~~---~~eele~l~~~-------~~~~~is~~~e~gLd~Li~~~y~~L 298 (376)
T 4a9a_A 248 RYMPAIYVLNKIDSL---SIEELELLYRI-------PNAVPISSGQDWNLDELLQVMWDRL 298 (376)
T ss_dssp EEECEEEEEECGGGS---CHHHHHHHTTS-------TTEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hccceEEEEeccccc---CHHHHHHHhcc-------cchhhhhhhhcccchhHHHHHHHHc
Confidence 357999999999964 23333322111 1245789999999999998887765
No 219
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=89.65 E-value=0.83 Score=30.51 Aligned_cols=42 Identities=12% Similarity=0.165 Sum_probs=24.9
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCC
Q 044598 11 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 59 (110)
Q Consensus 11 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~ 59 (110)
.+|.+++|+|++....... ....+.. .-.+..+|+||.|...
T Consensus 212 ~pd~vlLVvDA~~gq~a~~---~a~~f~~----~~~i~gVIlTKlD~~~ 253 (443)
T 3dm5_A 212 HPHEVILVIDGTIGQQAYN---QALAFKE----ATPIGSIIVTKLDGSA 253 (443)
T ss_dssp CCSEEEEEEEGGGGGGHHH---HHHHHHH----SCTTEEEEEECCSSCS
T ss_pred cCceEEEEEeCCCchhHHH---HHHHHHh----hCCCeEEEEECCCCcc
Confidence 5788999999875322211 1222211 1235678999999753
No 220
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=88.56 E-value=0.33 Score=30.03 Aligned_cols=46 Identities=9% Similarity=0.113 Sum_probs=27.5
Q ss_pred cccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCC
Q 044598 9 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 59 (110)
Q Consensus 9 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~ 59 (110)
+.+++++++++|.... .+......+...+.. . .++++|.+|+|...
T Consensus 109 iaRal~~lllldep~~-gL~~lD~~~l~~L~~---~-~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 109 DTRVHCCLYFISPTGH-SLRPLDLEFMKHLSK---V-VNIIPVIAKADTMT 154 (270)
T ss_dssp CCSCCEEEEEECCCSS-SCCHHHHHHHHHHHT---T-SEEEEEETTGGGSC
T ss_pred hheeeeeeEEEecCCC-cCCHHHHHHHHHHHh---c-CcEEEEEeccccCC
Confidence 4467899999996421 111122222222322 2 89999999999754
No 221
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=86.82 E-value=0.55 Score=31.19 Aligned_cols=39 Identities=13% Similarity=0.168 Sum_probs=22.5
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCC
Q 044598 15 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 59 (110)
Q Consensus 15 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~ 59 (110)
++|+.|+... +...+..+.+.+. .+.|+++|.||+|...
T Consensus 152 v~fI~d~~~~--l~~~Dieilk~L~----~~~~vI~Vi~KtD~Lt 190 (427)
T 2qag_B 152 LYFIAPTGHS--LKSLDLVTMKKLD----SKVNIIPIIAKADAIS 190 (427)
T ss_dssp EEEECCCC-----CHHHHHHHHHTC----SCSEEEEEESCGGGSC
T ss_pred EEEEeCCCCC--CCHHHHHHHHHHh----hCCCEEEEEcchhccc
Confidence 4556665532 3233333444442 4689999999999754
No 222
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=85.30 E-value=1.9 Score=25.27 Aligned_cols=52 Identities=8% Similarity=0.140 Sum_probs=31.3
Q ss_pred HHHhcccCCEEEEEEECCC---hhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCC
Q 044598 5 WRHYFQNTQGLIFVVDSND---RDRVVEARDELHRMLNEDELRDAVLLVFANKQD 56 (110)
Q Consensus 5 ~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D 56 (110)
|...+..||++|++..--+ +..+.....|+........+.++|+.++..=..
T Consensus 61 l~~~i~~aD~~ii~tPeYn~s~pg~LKn~iDwlsr~~~~~~~~gKpv~~v~~S~G 115 (190)
T 3u7r_A 61 LKDRIEHSDAVLAITPEYNRSYPGMIKNAIDWATRPYGQNSWKGKPAAVIGTSPG 115 (190)
T ss_dssp HHHHHHTSSEEEEECCCBTTBCCHHHHHHHHHHHCSTTCCTTTTCEEEEEEEESS
T ss_pred HHHHHHhCCcEEEechhhcccCCHHHHHHHHHhcccccCCccCCCEEEEEEeCCc
Confidence 4556889999999986543 223444444443222223456899998875443
No 223
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=83.78 E-value=4.9 Score=23.75 Aligned_cols=66 Identities=17% Similarity=0.135 Sum_probs=41.5
Q ss_pred HHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCCCCHHHHHhhhCC
Q 044598 5 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL 72 (110)
Q Consensus 5 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~ 72 (110)
....+..||.+++++..+ ..+.......+..+. ........+-+|.|+.+.......+++.+.++.
T Consensus 134 ~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~-~~~~~~~~~~~v~N~~~~~~~~~~~~~~~~~~~ 199 (245)
T 3ea0_A 134 GVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCK-EFEKPISRIEIILNRADTNSRITSDEIEKVIGR 199 (245)
T ss_dssp HHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHH-TCSSCCSCEEEEEESTTSCTTSCHHHHHHHHTS
T ss_pred HHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHH-HhCCCccceEEEEecCCCCCCCCHHHHHHHhCC
Confidence 345678899999999875 445555544444432 222234568899999997555455566655543
No 224
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=83.51 E-value=6 Score=24.51 Aligned_cols=51 Identities=12% Similarity=0.122 Sum_probs=31.0
Q ss_pred HHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEE-EEeeCCCC
Q 044598 6 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL-VFANKQDL 57 (110)
Q Consensus 6 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-iv~nK~Dl 57 (110)
...+..||.+|++++++ ..+.......+..+.......+.+++ +|.|+.+.
T Consensus 174 ~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 174 AAPLQHADQAVVVTAND-FDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp GGGGGTCSEEEEEECSS-HHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred HHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 34577899999999865 44455544444433322111345544 89999984
No 225
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=81.58 E-value=3.3 Score=22.19 Aligned_cols=46 Identities=17% Similarity=0.481 Sum_probs=27.0
Q ss_pred cchHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCC
Q 044598 2 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQD 56 (110)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D 56 (110)
|.+|.. |...|++++|..-. ..|+..+.....-.+..++++.|.-|
T Consensus 69 reiwer-ypqldvvvivttdd--------kewikdfieeakergvevfvvynnkd 114 (162)
T 2l82_A 69 REIWER-YPQLDVVVIVTTDD--------KEWIKDFIEEAKERGVEVFVVYNNKD 114 (162)
T ss_dssp HHHHHH-CTTCCEEEEEECCC--------HHHHHHHHHHHHHTTCEEEEEEECSC
T ss_pred HHHHHh-CCCCcEEEEEecCc--------HHHHHHHHHHHHhcCcEEEEEecCCC
Confidence 346764 67788888876322 23444443332225778777777666
No 226
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=80.55 E-value=0.98 Score=29.71 Aligned_cols=20 Identities=5% Similarity=0.195 Sum_probs=16.2
Q ss_pred hHHHhcccCCEEEEEEECCC
Q 044598 4 LWRHYFQNTQGLIFVVDSND 23 (110)
Q Consensus 4 ~~~~~~~~~~~~i~v~d~~~ 23 (110)
.+..+++++|++++|+|+++
T Consensus 109 ~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 109 AFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp HHHHHHHTSSSEEEEEEC--
T ss_pred HHHHHHHhcCeEEEEEecCC
Confidence 56778999999999999875
No 227
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=80.27 E-value=1.5 Score=29.02 Aligned_cols=63 Identities=10% Similarity=0.005 Sum_probs=37.4
Q ss_pred CCCeEEEEeeCCCCC---------CCCCHHHHHhhhCCC------cccCcceEEEeeec--ccCCCHHHHHHHHHHHHHh
Q 044598 44 RDAVLLVFANKQDLP---------NAMNAAEITDKLGLH------SLRQRHWYIQSTCA--TSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 44 ~~~~~iiv~nK~Dl~---------~~~~~~~~~~~~~~~------~~~~~~~~~~~~Sa--~~~~~i~~l~~~l~~~~~~ 106 (110)
.++|+++|.||.|+. +.....++.+.+... ........++.+|+ ..+.|++++.+.+.+.++.
T Consensus 174 ~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 174 MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence 368999999999962 122233322221100 00001225677888 6667799999999888754
No 228
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=79.94 E-value=5.6 Score=22.81 Aligned_cols=39 Identities=13% Similarity=0.096 Sum_probs=25.3
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEe
Q 044598 8 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFA 52 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~ 52 (110)
.+++||++|.++|...+++-.... +--... .++|++.+.
T Consensus 78 ~i~~aD~vVA~ldg~~~D~GTa~E--iGyA~a----lgKPVv~l~ 116 (167)
T 1s2d_A 78 GISNATCGVFLYDMDQLDDGSAFX--IGFMRA----MHKPVILVP 116 (167)
T ss_dssp HHHHCSEEEEEEESSSCCHHHHHH--HHHHHH----TTCCEEEEE
T ss_pred HHHhCCEEEEECCCCCCCCCceee--hhhHhh----CCCeEEEEE
Confidence 467899999999977665543332 221211 478998884
No 229
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=79.91 E-value=7 Score=22.85 Aligned_cols=51 Identities=2% Similarity=-0.109 Sum_probs=32.8
Q ss_pred HHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCC
Q 044598 5 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 59 (110)
Q Consensus 5 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~ 59 (110)
....+..+|.+|+++.++ ..+.......+..+... .+.++.+|.|+.|...
T Consensus 84 ~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~---~~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 84 LEALADGCDLLVIPSTPD-ALALDALMLTIETLQKL---GNNRFRILLTIIPPYP 134 (209)
T ss_dssp HHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHT---CSSSEEEEECSBCCTT
T ss_pred HHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhc---cCCCEEEEEEecCCcc
Confidence 455678899999999876 34444444444333221 1456889999998654
No 230
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=77.88 E-value=4.3 Score=23.02 Aligned_cols=42 Identities=12% Similarity=0.112 Sum_probs=26.4
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCC
Q 044598 8 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 55 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~ 55 (110)
.+++||++|.++|..++++-.... +.-... .++|++.+..+-
T Consensus 75 ~i~~aD~vvA~ldg~~~D~GT~~E--iGyA~A----~gkPVv~~~~~~ 116 (157)
T 1f8y_A 75 GIKTNDIMLGVYIPDEEDVGLGME--LGYALS----QGKYVLLVIPDE 116 (157)
T ss_dssp HHHTSSEEEEECCGGGCCHHHHHH--HHHHHH----TTCEEEEEECGG
T ss_pred HHHhCCEEEEEcCCCCCCccHHHH--HHHHHH----CCCeEEEEEcCC
Confidence 467899999999976554433222 222211 579998887553
No 231
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=76.02 E-value=5.5 Score=22.78 Aligned_cols=42 Identities=10% Similarity=0.113 Sum_probs=25.8
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCC
Q 044598 8 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 55 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~ 55 (110)
.+++||++|.++|...+++-.... +.-... .++|++++.+-.
T Consensus 66 ~i~~aD~viA~ldg~~~D~Gt~~E--iG~A~a----~gkPVi~~~~D~ 107 (162)
T 3ehd_A 66 NVLASDLLVALLDGPTIDAGVASE--IGVAYA----KGIPVVALYTDS 107 (162)
T ss_dssp HHHTCSEEEEECCSSSCCHHHHHH--HHHHHH----TTCCEEEECCCG
T ss_pred HHHHCCEEEEECCCCCCCCCHHHH--HHHHHH----CCCEEEEEEcCc
Confidence 467899999999876544333222 221211 478988886544
No 232
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=73.68 E-value=10 Score=21.62 Aligned_cols=51 Identities=10% Similarity=0.019 Sum_probs=31.3
Q ss_pred HHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCC-CCCCeEEEEeeCCCCC
Q 044598 6 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDE-LRDAVLLVFANKQDLP 58 (110)
Q Consensus 6 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nK~Dl~ 58 (110)
...+..+|.+++++..+.. + ......+..+..... ..+.++.+|.|+.|..
T Consensus 92 ~~~l~~ad~viiv~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 92 SAAVMVSDLVIIPVTPSPL-D-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp HHHHHHCSEEEEEECSCTT-T-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred HHHHHHCCEEEEEecCCHH-H-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 4556779999999987643 3 444333333322111 1356779999999853
No 233
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=73.67 E-value=9.6 Score=22.28 Aligned_cols=50 Identities=4% Similarity=0.080 Sum_probs=30.6
Q ss_pred HHhcccCCEEEEEEECCChhhHHHHHHHHHHHhc--CCCCCCCeEEEEeeCC
Q 044598 6 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLN--EDELRDAVLLVFANKQ 55 (110)
Q Consensus 6 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~iiv~nK~ 55 (110)
..-+..||++|++...-...-....+.++..+.. ...+.++|+.++.+-.
T Consensus 68 ~~~i~~AD~iVi~tP~Y~~s~p~~LK~~iD~~~~~~~~~l~gK~v~~v~tsg 119 (199)
T 4hs4_A 68 AQQIATADAVVIVTPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTASP 119 (199)
T ss_dssp HHHHHHSSEEEEEECCBTTBCCHHHHHHHHHHTTSSSCTTTTCEEEEEEECS
T ss_pred HHHHHhCCEEEEEcCccCCCcCHHHHHHHHHhcccCCcccCCCEEEEEEeCC
Confidence 3457899999999976542222333444444432 1245689999988753
No 234
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=69.78 E-value=13 Score=24.69 Aligned_cols=41 Identities=17% Similarity=0.177 Sum_probs=25.5
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCC-e-EEEEeeCCCCCC
Q 044598 11 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDA-V-LLVFANKQDLPN 59 (110)
Q Consensus 11 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~iiv~nK~Dl~~ 59 (110)
.+|.+++|+|+..... .......+ . ... | ..+|.||+|...
T Consensus 210 ~~d~vllVvda~~g~~---~~~~~~~~-~----~~~~~i~gvVlnK~D~~~ 252 (432)
T 2v3c_C 210 NPDEIILVIDGTIGQQ---AGIQAKAF-K----EAVGEIGSIIVTKLDGSA 252 (432)
T ss_dssp CCSEEEEEEEGGGGGG---HHHHHHHH-H----TTSCSCEEEEEECSSSCS
T ss_pred cCcceeEEeeccccHH---HHHHHHHH-h----hcccCCeEEEEeCCCCcc
Confidence 6899999999865322 11122222 1 124 4 889999999753
No 235
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=69.74 E-value=9.7 Score=22.01 Aligned_cols=52 Identities=12% Similarity=0.084 Sum_probs=32.1
Q ss_pred HHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcC---------CCCCCCeEEEEeeCCC
Q 044598 5 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNE---------DELRDAVLLVFANKQD 56 (110)
Q Consensus 5 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~iiv~nK~D 56 (110)
+..-+..||++|+....-...-....+.++..+... ..+.++|+.++.+--.
T Consensus 61 ~~~~i~~AD~iV~~sP~y~~~~p~~lK~~iD~~~~~~~~~~~~g~~~l~gK~~~i~~t~gg 121 (192)
T 3fvw_A 61 AREEVQEADAIWIFSPVYNYAIPGPVKNLLDWLSRSLDLSDPTGPSVLQDKIVTVSSVANG 121 (192)
T ss_dssp HHHHHHHCSEEEEECCCBTTBCCHHHHHHHHHHTSCSCSSCTTSCCTTTTCEEEEEEESCC
T ss_pred HHHHHHhCCEEEEECcccccCCCHHHHHHHHHhhccccccCCCCCccCCCCEEEEEEeCCC
Confidence 344578899999988754422223345556555421 2356789888877654
No 236
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=67.94 E-value=13 Score=21.70 Aligned_cols=48 Identities=10% Similarity=0.090 Sum_probs=30.6
Q ss_pred HHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeC
Q 044598 6 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANK 54 (110)
Q Consensus 6 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK 54 (110)
..-+..||++|+....-...-....+.++..+ ....+.++|+.++.+-
T Consensus 80 ~~~i~~AD~ivi~sP~Y~~~~~~~lK~~iD~~-~~~~l~gK~~~~v~t~ 127 (191)
T 3k1y_A 80 TSALSASDGLVVATPVFKASYTGLFKMFFDIL-DTDALTGMPTIIAATA 127 (191)
T ss_dssp HHHHHHCSEEEEEEECBTTBSCHHHHHHHHHS-CTTTTTTCEEEEEEEE
T ss_pred HHHHHHCCEEEEEcCccCCcCcHHHHHHHHHh-hhhhcCCCEEEEEEeC
Confidence 44578899999999865432223344455443 2234578999888873
No 237
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=67.77 E-value=13 Score=21.21 Aligned_cols=43 Identities=12% Similarity=0.210 Sum_probs=25.4
Q ss_pred HhcccCCEEEEEEEC---CChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCC
Q 044598 7 HYFQNTQGLIFVVDS---NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 55 (110)
Q Consensus 7 ~~~~~~~~~i~v~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~ 55 (110)
..+++||++|-++|+ ..+++-... ++.-... .++|++++.+..
T Consensus 63 ~~i~~aD~vVA~ldpf~g~~~D~GTaf--EiGyA~A----lgKPVi~l~~d~ 108 (161)
T 2f62_A 63 QMIKDCDAVIADLSPFRGHEPDCGTAF--EVGCAAA----LNKMVLTFTSDR 108 (161)
T ss_dssp HHHHHCSEEEEECCCCSSSSCCHHHHH--HHHHHHH----TTCEEEEECSCC
T ss_pred HHHHhCCEEEEEecCCCCCCCCCcHHH--HHHHHHH----CCCEEEEEEcCc
Confidence 357789999999983 223322221 2222211 579999987653
No 238
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=65.84 E-value=16 Score=21.15 Aligned_cols=50 Identities=10% Similarity=0.096 Sum_probs=32.2
Q ss_pred HhcccCCEEEEEEECCChhhHHHHHHHHHHHhcC------------CCCCCCeEEEEeeCCC
Q 044598 7 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNE------------DELRDAVLLVFANKQD 56 (110)
Q Consensus 7 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~iiv~nK~D 56 (110)
.-+..||++|+....-...-....+.|+..+... ..+.+++++++.+--.
T Consensus 69 ~~l~~AD~iV~~~P~y~~~~pa~LK~~iD~v~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~ 130 (196)
T 3lcm_A 69 DLVTWADHLIFIFPIWWSGMPAILKGFIDRVFVADFAYSYKKVGLEGHLQGKSAWIITTHNT 130 (196)
T ss_dssp HHHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTEEECSSSEEESCTTCEEEEEEECSS
T ss_pred HHHHhCCEEEEECchhhccccHHHHHHHHHHccCCcceecCCCCcccCCCCCEEEEEEcCCC
Confidence 3467899999999865433334456677766431 1245788888877643
No 239
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=63.88 E-value=17 Score=21.23 Aligned_cols=50 Identities=8% Similarity=0.039 Sum_probs=32.4
Q ss_pred HhcccCCEEEEEEECCChhhHHHHHHHHHHHhcC--------CCCCCCeEEEEeeCCC
Q 044598 7 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNE--------DELRDAVLLVFANKQD 56 (110)
Q Consensus 7 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~iiv~nK~D 56 (110)
.-+..||++|+....-...-....+.|+..+... ..+.+++++++.+--.
T Consensus 54 ~~l~~AD~iv~~~P~y~~~~pa~lK~~iDrv~~~g~~y~~~g~~l~gK~~~~~~t~G~ 111 (192)
T 3f2v_A 54 KLIETHDSLVWQFPIYWFNCPPLLKQWLDEVLTYGWAYGSKGKALKGRKIALAVSLGA 111 (192)
T ss_dssp HHHHTSSSEEEEEECBTTBCCHHHHHHHHHHSCBTTTBSSSCCSSTTCEEEEEEEESS
T ss_pred HHHHhCCEEEEEcChhhcCCCHHHHHHHHHHhhcCccccCCCCCCCCCEEEEEEeCCC
Confidence 3578899999999865432234456677776432 2345788887776544
No 240
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=62.84 E-value=9.9 Score=21.79 Aligned_cols=50 Identities=4% Similarity=0.098 Sum_probs=29.7
Q ss_pred HhcccCCEEEEEEECCChhhHHHHHHHHHHHhcC--CCCCCCeEEEEeeCCC
Q 044598 7 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNE--DELRDAVLLVFANKQD 56 (110)
Q Consensus 7 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~iiv~nK~D 56 (110)
.-+..+|++|+....-...-....+.++..+... ..+.++|+.++.+-..
T Consensus 68 ~~l~~aD~ii~~sP~y~~~~p~~lK~~iD~~~~~~~~~l~gK~~~~~~t~gg 119 (193)
T 1rtt_A 68 EQIRAADALLFATPEYNYSMAGVLKNAIDWASRPPEQPFSGKPAAILGASAG 119 (193)
T ss_dssp HHHHHCSEEEEECCEETTEECHHHHHHHHHHTCSSSCTTTTCEEEEEEECSS
T ss_pred HHHHhCCEEEEEccccccCcCHHHHHHHHHhccccCcccCCCeEEEEEeCCC
Confidence 3577899999987543321123344555554321 1346789998888643
No 241
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=62.72 E-value=18 Score=20.76 Aligned_cols=50 Identities=8% Similarity=0.039 Sum_probs=31.6
Q ss_pred HhcccCCEEEEEEECCChhhHHHHHHHHHHHhcC-------CCCCCCeEEEEeeCCC
Q 044598 7 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNE-------DELRDAVLLVFANKQD 56 (110)
Q Consensus 7 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~iiv~nK~D 56 (110)
.-+..||++|+....-...-....+.|+..+... ..+.+++++++.+--.
T Consensus 47 ~~l~~aD~iV~~~P~y~~~~pa~lK~~iDrv~~~g~~~~~~~~l~gK~~~~~~t~g~ 103 (177)
T 3ha2_A 47 SLLLQNDRIILEFPLYWYSAPALLKQWMDTVMTTKFATGHQYALEGKELGIVVSTGD 103 (177)
T ss_dssp HHHHTCSEEEEEEECBTTBCCHHHHHHHHHHSCHHHHSTTTCTTTTCEEEEEEEESS
T ss_pred HHHHhCCEEEEECChhhccCCHHHHHHHHHHhhcccccCCCcCCCCCEEEEEEeCCC
Confidence 4578899999999865322234445666665331 2346788888877544
No 242
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=61.64 E-value=16 Score=22.30 Aligned_cols=49 Identities=10% Similarity=0.086 Sum_probs=30.2
Q ss_pred HHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcC----CCCCCCeEEEEeeC
Q 044598 6 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNE----DELRDAVLLVFANK 54 (110)
Q Consensus 6 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~----~~~~~~~~iiv~nK 54 (110)
..-+..||++|+....-...-....+.++..+... ..+.++|+.++.+-
T Consensus 93 ~~~i~~AD~iI~~sP~Yn~sipa~LKn~iD~l~~~~~~~~~l~gK~v~~v~ts 145 (247)
T 2q62_A 93 RELSIWSEGQVWVSPERHGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQVS 145 (247)
T ss_dssp HHHHHHCSEEEEEEECSSSSCCHHHHHHHHTSCSCBTTBCSSTTCEEEEEEEC
T ss_pred HHHHHHCCEEEEEeCCCCCCccHHHHHHHHHhhhccCcccccCCCEEEEEEeC
Confidence 34577899999999865432223334444443221 23468999888875
No 243
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=61.36 E-value=23 Score=21.01 Aligned_cols=52 Identities=6% Similarity=-0.032 Sum_probs=31.6
Q ss_pred HHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCC-----CCCCeEEEEeeCCCC
Q 044598 5 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDE-----LRDAVLLVFANKQDL 57 (110)
Q Consensus 5 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~iiv~nK~Dl 57 (110)
....+..+|.++++++++ ..+.......+..+..... ......-+|.|+.+.
T Consensus 129 ~~~~l~~ad~vi~v~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~ 185 (260)
T 3q9l_A 129 ALMALYFADEAIITTNPE-VSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (260)
T ss_dssp HHHHHHTCSEEEEEECSS-HHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECH
T ss_pred HHHHHHhCCEEEEEecCC-hhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCc
Confidence 445677899999999875 4445554444433321110 022578899999884
No 244
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=61.23 E-value=22 Score=20.64 Aligned_cols=50 Identities=8% Similarity=0.185 Sum_probs=29.5
Q ss_pred HHhcccCCEEEEEEECCChhhHHHHHHHHHHHhc--CCCCCCCeEEEEeeCC
Q 044598 6 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLN--EDELRDAVLLVFANKQ 55 (110)
Q Consensus 6 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~iiv~nK~ 55 (110)
..-+..||++|+....-...-....+.++..+.. ...+.++|+.++.+-.
T Consensus 67 ~~~i~~AD~iv~~sP~y~~~~~~~lK~~iD~~~~~~~~~~~gK~~~~~~~s~ 118 (193)
T 3svl_A 67 AEQIRQADGVVIVTPEYNYSVPGGLKNAIDWLSRLPDQPLAGKPVLIQTSSM 118 (193)
T ss_dssp HHHHHHSSEEEEEECCBTTBCCHHHHHHHHHHHTSTTCTTTTCEEEEEEECS
T ss_pred HHHHHHCCEEEEEecccCCCCCHHHHHHHHHHhhcCccccCCCeEEEEEeCC
Confidence 3457889999999875442212223334443322 1245689999888643
No 245
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=60.88 E-value=18 Score=22.25 Aligned_cols=48 Identities=8% Similarity=0.021 Sum_probs=31.7
Q ss_pred cccCCEEEEEEECCChhhHHHHHHHHHHHhcC------------CCCCCCeEEEEeeCCC
Q 044598 9 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNE------------DELRDAVLLVFANKQD 56 (110)
Q Consensus 9 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~iiv~nK~D 56 (110)
+..||++|+....-...-....+.|+..+... ..+.+++++++.+--.
T Consensus 91 l~~AD~IV~~~P~y~~s~Pa~LK~~iDrv~~~g~~f~~~~~~~~g~l~gK~~~~i~t~Gg 150 (273)
T 1d4a_A 91 LEAADLVIFQFPLQWFGVPAILKGWFERVFIGEFAYTYAAMYDKGPFRSKKAVLSITTGG 150 (273)
T ss_dssp HHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBCTTSCGGGSTTTTCEEEEEEECSS
T ss_pred HHhCCEEEEECchhhccCCHHHHHHHHHHHhcCcccccCCCCCccccCCCEEEEEEeCCC
Confidence 77899999999875433234456677766432 1245788888887554
No 246
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=59.92 E-value=24 Score=20.69 Aligned_cols=47 Identities=13% Similarity=0.067 Sum_probs=29.1
Q ss_pred HHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCC
Q 044598 6 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQD 56 (110)
Q Consensus 6 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D 56 (110)
...+..||.++++++++ ..+......... ..... ....+.++.|+.+
T Consensus 148 ~~~l~~aD~viiv~~~~-~~s~~~~~~~~~-~~~~~--~~~~~~~v~N~~~ 194 (254)
T 3kjh_A 148 RGTAKAVDMMIAVIEPN-LNSIKTGLNIEK-LAGDL--GIKKVRYVINKVR 194 (254)
T ss_dssp HHHHTTCSEEEEEECSS-HHHHHHHHHHHH-HHHHH--TCSCEEEEEEEEC
T ss_pred HHHHHHCCEEEEecCCC-HHHHHHHHHHHH-HHHHc--CCccEEEEEeCCC
Confidence 44567899999999875 344444433222 22221 2255789999998
No 247
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=58.19 E-value=28 Score=20.91 Aligned_cols=49 Identities=4% Similarity=-0.094 Sum_probs=30.4
Q ss_pred HHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCC
Q 044598 5 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQD 56 (110)
Q Consensus 5 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D 56 (110)
....+..||.+|+++.++. .+.......+.. +.... .+.++.+|.|+.+
T Consensus 160 ~~~~l~~aD~vivv~~~~~-~s~~~~~~~~~~-l~~~~-~~~~~~vv~N~~~ 208 (267)
T 3k9g_A 160 LKNALLCSDYVIIPMTAEK-WAVESLDLFNFF-VRKLN-LFLPIFLIITRFK 208 (267)
T ss_dssp HHHHHTTCSEEEEEEESCT-THHHHHHHHHHH-HHTTT-CCCCEEEEEEEEC
T ss_pred HHHHHHHCCeEEEEeCCCh-HHHHHHHHHHHH-HHHHh-ccCCEEEEEeccc
Confidence 3455678999999998763 344444333333 22221 3457789999994
No 248
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=57.78 E-value=21 Score=23.84 Aligned_cols=41 Identities=17% Similarity=0.289 Sum_probs=24.3
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCC
Q 044598 11 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 58 (110)
Q Consensus 11 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 58 (110)
..+.+++|+|+............+.+. -.+..+|+||.|..
T Consensus 211 ~pd~vlLVlDa~~gq~a~~~a~~f~~~-------~~~~gVIlTKlD~~ 251 (433)
T 3kl4_A 211 KPDDVILVIDASIGQKAYDLASRFHQA-------SPIGSVIITKMDGT 251 (433)
T ss_dssp CCSEEEEEEEGGGGGGGHHHHHHHHHH-------CSSEEEEEECGGGC
T ss_pred CCcceEEEEeCccchHHHHHHHHHhcc-------cCCcEEEEeccccc
Confidence 458899999987532221111222221 24578899999975
No 249
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=55.54 E-value=10 Score=26.29 Aligned_cols=16 Identities=19% Similarity=0.185 Sum_probs=13.2
Q ss_pred CCCeEEEEeeCCCCCC
Q 044598 44 RDAVLLVFANKQDLPN 59 (110)
Q Consensus 44 ~~~~~iiv~nK~Dl~~ 59 (110)
.+.+.++|.||.|+..
T Consensus 213 ~g~rtI~VlTK~Dlv~ 228 (608)
T 3szr_A 213 EGDRTIGILTKPDLVD 228 (608)
T ss_dssp SCCSEEEEEECGGGSS
T ss_pred cCCceEEEecchhhcC
Confidence 4678999999999853
No 250
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=54.28 E-value=24 Score=19.94 Aligned_cols=42 Identities=17% Similarity=0.180 Sum_probs=25.2
Q ss_pred HhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCC
Q 044598 7 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQD 56 (110)
Q Consensus 7 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D 56 (110)
..+++||+++.++|..+... .. ++.-... .++|++++.++.+
T Consensus 73 ~~i~~aD~vva~~~~~d~Gt--~~--EiGyA~a----lgKPVi~l~~~~~ 114 (165)
T 2khz_A 73 NWLQQADVVVAEVTQPSLGV--GY--ELGRAVA----LGKPILCLFRPQS 114 (165)
T ss_dssp HHHHHCSEEEEECSSCCHHH--HH--HHHHHHH----TCSSEEEEECTTT
T ss_pred HHHHhCCEEEEECCCCCCCH--HH--HHHHHHH----CCCEEEEEEcCCC
Confidence 35789999999887333222 11 1211111 5799999977664
No 251
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=53.92 E-value=29 Score=20.19 Aligned_cols=48 Identities=8% Similarity=0.071 Sum_probs=31.2
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHhcC----------------CCCCCCeEEEEeeCC
Q 044598 8 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNE----------------DELRDAVLLVFANKQ 55 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~iiv~nK~ 55 (110)
-+..||++|+....-...-....+.|+..+... ..+.+++++++.+--
T Consensus 84 ~l~~AD~iV~~~P~y~~~~pa~lK~~iD~~~~~g~~f~~~~~~g~~~~~~~l~gK~~~~i~t~g 147 (212)
T 3r6w_A 84 ELFDSDLLVISTPMYNFSVPSGLKAWIDQIVRLGVTFDFVLDNGVAQYRPLLRGKRALIVTSRG 147 (212)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEEEEECC-CEEEEECCCSCEEEEEEECS
T ss_pred HHHhCCEEEEEcCcccccCCHHHHHHHHHHhhCCceeecccCCCCccccccCCCCEEEEEEecC
Confidence 477899999999865433234456677766321 124578888887755
No 252
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=53.16 E-value=27 Score=19.78 Aligned_cols=46 Identities=13% Similarity=0.219 Sum_probs=28.3
Q ss_pred HHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEee
Q 044598 6 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFAN 53 (110)
Q Consensus 6 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~n 53 (110)
..-+..||++|+....-...-....+.++..+.. .+.++|+.++.+
T Consensus 79 ~~~l~~aD~iI~~sP~y~~~~p~~lK~~iD~~~~--~l~gK~~~~~~~ 124 (191)
T 1t0i_A 79 SRIVNALDIIVFVTPQYNWGYPAALKNAIDRLYH--EWHGKPALVVSY 124 (191)
T ss_dssp HHHHHTCSEEEEEEECBTTBCCHHHHHHHHTCST--TTTTCEEEEEEE
T ss_pred HHHHHhCCEEEEEeceECCCCCHHHHHHHHHHHh--hcCCCEEEEEEe
Confidence 3457799999999986543222334445554321 246788887765
No 253
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=52.86 E-value=27 Score=19.87 Aligned_cols=50 Identities=2% Similarity=0.059 Sum_probs=30.7
Q ss_pred HhcccCCEEEEEEECCChhhHHHHHHHHHHHhcC------------CCCCCCeEEEEeeCCC
Q 044598 7 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNE------------DELRDAVLLVFANKQD 56 (110)
Q Consensus 7 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~iiv~nK~D 56 (110)
.-+..+|++|+....-...-....+.++..+... ..+.+++++++.+--.
T Consensus 82 ~~l~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~ 143 (201)
T 1t5b_A 82 AELKAHDVIVIAAPMYNFNIPTQLKNYFDLIARAGITFRYTEKGPEGLVTGKRAVVLSSRGG 143 (201)
T ss_dssp HHHHHCSEEEEECCCBTTBCCHHHHHHHHHHCCBTTTEEEETTEEEESSCSCEEEEEEECSS
T ss_pred HHHHhCCEEEEEeCcccCcCCHHHHHHHHHheeCCCceecCCCCCccCCCCCeEEEEEecCC
Confidence 3577899999998764322223445666665421 1246788888887443
No 254
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=52.36 E-value=35 Score=20.36 Aligned_cols=49 Identities=16% Similarity=0.084 Sum_probs=29.5
Q ss_pred HHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCC
Q 044598 6 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 58 (110)
Q Consensus 6 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 58 (110)
...+..+|.+|+++... ..+.......+..+... .....-+|.|+.+..
T Consensus 127 ~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~---~~~~~~vv~N~~~~~ 175 (263)
T 1hyq_A 127 VIAIAAAQELLLVVNPE-ISSITDGLKTKIVAERL---GTKVLGVVVNRITTL 175 (263)
T ss_dssp HHHHHHSSEEEEEECSS-HHHHHHHHHHHHHHHHH---TCEEEEEEEEEECTT
T ss_pred HHHHHHCCEEEEEeCCC-hhHHHHHHHHHHHHHhc---CCCeeEEEEccCCcc
Confidence 34567899999999865 33444444333332221 224567899999853
No 255
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=51.60 E-value=32 Score=21.03 Aligned_cols=46 Identities=22% Similarity=0.302 Sum_probs=26.6
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEE-EEeeCCCCC
Q 044598 8 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL-VFANKQDLP 58 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-iv~nK~Dl~ 58 (110)
....+|.+|+|+..... +.......+..+ .. .+.+++ +|.|+.|..
T Consensus 211 l~~~aD~vilVv~~~~~-~~~~~~~~~~~l-~~---~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 211 FSKFTGNVVYVVNSENN-NKDEVKKGKELI-EA---TGAKLLGVVLNRMPKD 257 (271)
T ss_dssp HHHHHCEEEEEEETTSC-CHHHHHHHHHHH-HT---TTCEEEEEEEEEECC-
T ss_pred HHHHCCEEEEEEeCCCC-cHHHHHHHHHHH-Hh---CCCCEEEEEEeCCcCC
Confidence 34568999999987542 333333333322 22 245555 889999853
No 256
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=49.99 E-value=39 Score=20.17 Aligned_cols=50 Identities=12% Similarity=0.041 Sum_probs=31.7
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHhcC------------CCCCCCeEEEEeeCCCC
Q 044598 8 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNE------------DELRDAVLLVFANKQDL 57 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~iiv~nK~Dl 57 (110)
-+..||++|+....-...-....+.++..+... ..+.+++++++.+--.-
T Consensus 89 ~l~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~~~T~g~~ 150 (228)
T 3tem_A 89 KVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTGGT 150 (228)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBCSSCCGGGCTTTTCEEEEEEECSSC
T ss_pred HHHhCCEEEEECChhhcccCHHHHHHHHHHhhcCcccccCCCCCCCCCCCCEEEEEEeCCCC
Confidence 367899999999865422233445666665422 23457888888776543
No 257
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=49.44 E-value=27 Score=20.06 Aligned_cols=46 Identities=20% Similarity=0.082 Sum_probs=27.7
Q ss_pred HhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEee
Q 044598 7 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFAN 53 (110)
Q Consensus 7 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~n 53 (110)
.-+..+|++|+....-...-....+.++.. +......++|+.++++
T Consensus 65 ~~i~~aD~ii~~sP~y~~~~p~~lK~~ld~-l~~~~~~gK~~~~~~t 110 (197)
T 2vzf_A 65 DATCNADGLIVATPIYKASYTGLLKAFLDI-LPQFALAGKAALPLAT 110 (197)
T ss_dssp HHHHHCSEEEEEEECBTTBCCHHHHHHHTT-SCTTTTTTCEEEEEEE
T ss_pred HHHHHCCEEEEEeCccCCCCCHHHHHHHHh-ccccccCCCEEEEEEE
Confidence 346789999999876542212223333333 2222456899999988
No 258
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=49.24 E-value=41 Score=20.20 Aligned_cols=42 Identities=14% Similarity=0.268 Sum_probs=25.7
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEE-EEeeCCCC
Q 044598 11 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL-VFANKQDL 57 (110)
Q Consensus 11 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-iv~nK~Dl 57 (110)
.+|.+|++..+.. .+.......+..+ .. .+.+++ +|.|+.|.
T Consensus 152 ~aD~viiv~~~~~-~s~~~~~~~~~~l-~~---~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 152 KPTGVVVVSTPQE-LTAVIVEKAINMA-EE---TNTSVLGLVENMSYF 194 (262)
T ss_dssp CCSEEEEEECSSS-CCHHHHHHHHHHH-HT---TTCCEEEEEETTCCE
T ss_pred cCCeEEEEecCcc-chHHHHHHHHHHH-Hh---CCCCEEEEEECCCcc
Confidence 6899999987653 3344444333333 22 245666 89999874
No 259
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=47.90 E-value=15 Score=19.54 Aligned_cols=41 Identities=5% Similarity=-0.037 Sum_probs=23.3
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEee
Q 044598 8 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFAN 53 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~n 53 (110)
.+++|+++|.++...... -.....++.... ..++|++.|.-
T Consensus 35 ~I~~~~~vIvL~G~~t~~-s~wv~~EI~~A~----~~gkpIigV~~ 75 (111)
T 1eiw_A 35 TPEDADAVIVLAGLWGTR-RDEILGAVDLAR----KSSKPIITVRP 75 (111)
T ss_dssp CSSSCSEEEEEGGGTTTS-HHHHHHHHHHHT----TTTCCEEEECC
T ss_pred ccccCCEEEEEeCCCcCC-ChHHHHHHHHHH----HcCCCEEEEEc
Confidence 367899999888764322 222223333322 25789877753
No 260
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=47.48 E-value=14 Score=20.81 Aligned_cols=49 Identities=6% Similarity=0.144 Sum_probs=28.3
Q ss_pred HhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCC
Q 044598 7 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQD 56 (110)
Q Consensus 7 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D 56 (110)
.-+..+|++|+....-...-....+.++.. +....+.++|+.++++-..
T Consensus 59 ~~i~~aD~ii~~tP~y~~~~p~~lk~~lD~-l~~~~~~gK~~~~~~~sgg 107 (174)
T 3gfs_A 59 QRVTKADAIVLLSPEYHSGMSGALKNALDF-LSSEQFKYKPVALLAVAGG 107 (174)
T ss_dssp HHHHHCSSEEEEEECSSSSCCHHHHHHHHT-CCHHHHTTCEEEEEEECCS
T ss_pred HHHHHCCEEEEEcCCcCCCCCHHHHHHHHH-hCHhhhCCCcEEEEEECCC
Confidence 357789999999986542222333333332 2212345789888886443
No 261
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=46.05 E-value=51 Score=20.57 Aligned_cols=42 Identities=14% Similarity=0.120 Sum_probs=25.3
Q ss_pred cccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCe-EEEEeeCCCCC
Q 044598 9 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLP 58 (110)
Q Consensus 9 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~Dl~ 58 (110)
...+|.+++|+|+..... .......+.. ..| ..+|.||.|..
T Consensus 210 ~~~~d~vllVvda~~g~~---~~~~~~~~~~-----~~~i~gvVlnk~D~~ 252 (297)
T 1j8m_F 210 AIKPDEVTLVIDASIGQK---AYDLASKFNQ-----ASKIGTIIITKMDGT 252 (297)
T ss_dssp HHCCSEEEEEEEGGGGGG---HHHHHHHHHH-----TCTTEEEEEECGGGC
T ss_pred HhcCCEEEEEeeCCchHH---HHHHHHHHHh-----hCCCCEEEEeCCCCC
Confidence 447899999999864321 1122222211 234 67899999974
No 262
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=44.36 E-value=49 Score=19.74 Aligned_cols=51 Identities=12% Similarity=0.070 Sum_probs=29.5
Q ss_pred HHhcccCCEEEEEEECCChhhHHHHH---HHHHHHhcCCCCCCCeEE-EEeeCCCCC
Q 044598 6 RHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLL-VFANKQDLP 58 (110)
Q Consensus 6 ~~~~~~~~~~i~v~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i-iv~nK~Dl~ 58 (110)
...+..||.+|+++.++. .+..... ..+..+.... ..+.+++ +|.|+.|..
T Consensus 128 ~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~-~~~~~~~gvv~N~~~~~ 182 (257)
T 1wcv_1 128 LNALAAAEGVVVPVQAEY-YALEGVAGLLATLEEVRAGL-NPRLRLLGILVTMYDGR 182 (257)
T ss_dssp HHHHHHCSEEEEEEESST-HHHHHHHHHHHHHHHHHHHT-CTTCEEEEEEEESBCTT
T ss_pred HHHHHHCCeEEEEecCch-HHHHHHHHHHHHHHHHHHHh-CCCceEEEEEEEeECCC
Confidence 345677999999998764 3333332 2333222111 1345664 899999854
No 263
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=44.17 E-value=39 Score=19.08 Aligned_cols=38 Identities=16% Similarity=0.155 Sum_probs=22.3
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEee
Q 044598 8 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFAN 53 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~n 53 (110)
.++.||+++-.+|..+. -.... +.-... .++|++++.+
T Consensus 65 ~i~~aD~vvA~l~~~d~--Gt~~E--iG~A~a----lgkPV~~l~~ 102 (152)
T 4fyk_A 65 WLQQADVVVAEVTQPSL--GVGYE--LGRAVA----LGKPILCLFR 102 (152)
T ss_dssp HHHHCSEEEEECSSCCH--HHHHH--HHHHHH----TTCCEEEEEC
T ss_pred HHHHCCEEEEeCCCCCC--CHHHH--HHHHHH----cCCeEEEEEe
Confidence 36789999998874332 22221 211111 4789988876
No 264
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=44.07 E-value=43 Score=18.99 Aligned_cols=50 Identities=12% Similarity=0.095 Sum_probs=29.8
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHhcC--CCCCCCeEEEEeeCCCC
Q 044598 8 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNE--DELRDAVLLVFANKQDL 57 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~iiv~nK~Dl 57 (110)
-+.++|++|+....-.-.-......++..+... ..+.++++.++++--..
T Consensus 49 ~l~~aD~ii~gsP~y~g~~~~~lk~fld~~~~~~~~~l~gk~~~~~~t~g~~ 100 (188)
T 2ark_A 49 DVLWADGLAVGSPTNMGLVSWKMKRFFDDVLGDLWGEIDGKIACAFSSSGGW 100 (188)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHHTGGGTTTSCTTCEEEEEEEESSB
T ss_pred HHHhCCEEEEEeCccCCcCCHHHHHHHHHHhhhhHHHhCCCeEEEEEECCCC
Confidence 356789999988765322223344555554320 23467898888885443
No 265
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=43.52 E-value=46 Score=19.13 Aligned_cols=48 Identities=4% Similarity=-0.043 Sum_probs=30.3
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHhcC------------CCCCCCeEEEEeeCC
Q 044598 8 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNE------------DELRDAVLLVFANKQ 55 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~iiv~nK~ 55 (110)
-+..||++|+....-...-....+.++..+... ..+.+++++++.+--
T Consensus 91 ~l~~aD~iv~~~P~y~~~~pa~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g 150 (208)
T 2hpv_A 91 QFLSADKVVIANPMWNLNVPTRLKAWVDTINVAGKTFQYTAEGPKPLTSGKKALHIQSNG 150 (208)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEEEETTEEEESCCSCEEEEEEEES
T ss_pred HHHhCCEEEEEeccccCCCCHHHHHHHHHHhcCCcEeecCCCCCccCCCCCeEEEEEecC
Confidence 467899999999865432234455666665431 113578888887643
No 266
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=43.20 E-value=36 Score=21.27 Aligned_cols=49 Identities=10% Similarity=0.142 Sum_probs=28.9
Q ss_pred HHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcC----CCCCCCeEEEEeeC
Q 044598 6 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNE----DELRDAVLLVFANK 54 (110)
Q Consensus 6 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~----~~~~~~~~iiv~nK 54 (110)
..-+..||++|++...-...-....+.++..+... ..+.++|+.++.+-
T Consensus 118 ~e~I~~ADgiV~aSP~Yn~sipg~LKn~IDrl~~~~g~~~~l~gK~v~lv~ts 170 (279)
T 2fzv_A 118 RALSEWSEGQVWCSPERHGQITSVMKAQIDHLPLEMAGIRPTQGRTLAVMQVS 170 (279)
T ss_dssp HHHHHHCSEEEEEEEEETTEECHHHHHHHHHSCSCBTTBCSSTTCEEEEEEEC
T ss_pred HHHHHHCCeEEEEcCccccCcCHHHHHHHHHHhhhcccccccCCCEEEEEEEC
Confidence 34577899999998754322123334444443221 13468998888874
No 267
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=42.58 E-value=59 Score=21.41 Aligned_cols=50 Identities=6% Similarity=-0.022 Sum_probs=32.8
Q ss_pred HhcccCCEEEEEEECCChhhHHHHHHHHHHHhcC--------CCCCCCeEEEEeeCCC
Q 044598 7 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNE--------DELRDAVLLVFANKQD 56 (110)
Q Consensus 7 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~iiv~nK~D 56 (110)
..+..||++++.+..-...-....+.|+..+... ..+.+++++++.+-..
T Consensus 288 ~~l~~aD~iv~~~P~yw~~~Pa~lK~~iDrv~~~g~~y~~~~~~l~gK~~~~~~t~g~ 345 (413)
T 3l9w_A 288 EALSRADLIVWQHPMQWYSIPPLLKLWIDKVFSHGWAYGHGGTALHGKHLLWAVTTGG 345 (413)
T ss_dssp HHHHTCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBSTTCCTTTTCEEEEEEECSS
T ss_pred HHHHhCCEEEEECchhhccCCHHHHHHHHHHHhcCceecCCCCccccceEEEEEeCCC
Confidence 4577899999999875433334456677776432 1245788888877554
No 268
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=41.66 E-value=40 Score=19.88 Aligned_cols=48 Identities=15% Similarity=0.262 Sum_probs=27.5
Q ss_pred HHHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCC
Q 044598 5 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQD 56 (110)
Q Consensus 5 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D 56 (110)
.+..+++++.+|+++......+ .....++..... ..++|+|+|--..+
T Consensus 73 LReRI~~Sk~vIllIs~~T~~s-~~v~wEIe~Ai~---~~~~PII~Vy~~~~ 120 (189)
T 3hyn_A 73 LHTRLDNSKNIILFLSSITANS-RALREEMNYGIG---TKGLPVIVIYPDYD 120 (189)
T ss_dssp HHHHHHTEEEEEEECCTTCCCC-HHHHHHHHHHTT---TTCCCEEEEETTCC
T ss_pred HHHHHHhcCcEEEEEecCcccc-chhHHHHHHHHH---hcCCcEEEEECCcc
Confidence 3446778888888886433222 233334444431 25789888875533
No 269
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=41.22 E-value=37 Score=17.79 Aligned_cols=45 Identities=4% Similarity=0.113 Sum_probs=25.7
Q ss_pred cccCCEEEEEEECCChhhHHH--HHHHHHHHhcCCCCCCCeEEEEeeCC
Q 044598 9 FQNTQGLIFVVDSNDRDRVVE--ARDELHRMLNEDELRDAVLLVFANKQ 55 (110)
Q Consensus 9 ~~~~~~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~iiv~nK~ 55 (110)
+..+|.+++....-....... ...++..+.. .+.++++.++++--
T Consensus 44 l~~~d~vi~g~p~y~~~~~~~~~~~~fl~~l~~--~l~~k~~~~~~t~g 90 (137)
T 2fz5_A 44 VASKDVILLGCPAMGSEELEDSVVEPFFTDLAP--KLKGKKVGLFGSYG 90 (137)
T ss_dssp HHTCSEEEEECCCBTTTBCCHHHHHHHHHHHGG--GCSSCEEEEEEEES
T ss_pred HhcCCEEEEEccccCCCCCCHHHHHHHHHHhhh--hcCCCEEEEEEecC
Confidence 567899988876532111111 3444444322 34678988888753
No 270
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=41.11 E-value=37 Score=18.93 Aligned_cols=48 Identities=13% Similarity=-0.043 Sum_probs=27.3
Q ss_pred HhcccCCEEEEEEECCChhhHHHHHHHHHHHhcC----------CCCCCCeEEEEeeC
Q 044598 7 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNE----------DELRDAVLLVFANK 54 (110)
Q Consensus 7 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~iiv~nK 54 (110)
.-+..+|++|+....-...-....+.++..+... ..+.+++++++.+-
T Consensus 67 ~~l~~aD~ii~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~l~~K~~~~i~t~ 124 (184)
T 1rli_A 67 ERILQCHILIFATPIYWFGMSGTLKLFIDRWSQTLRDPRFPDFKQQMSVKQAYVIAVG 124 (184)
T ss_dssp HHHHTCSEEEEEEECBTTBCCHHHHHHHHTHHHHTTCTTSTTHHHHHHTSEEEEEEEE
T ss_pred HHHHhCCEEEEEeCccccCCcHHHHHHHHHhHHhccCccccccccccCCCeEEEEEeC
Confidence 3477899999999765422122333444433210 01346888888874
No 271
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=40.16 E-value=55 Score=19.12 Aligned_cols=48 Identities=6% Similarity=0.056 Sum_probs=29.7
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHhcCC------------CCCCCeEEEEeeCC
Q 044598 8 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNED------------ELRDAVLLVFANKQ 55 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~iiv~nK~ 55 (110)
-+..||++|+....-...-....+.++..+.... .+.+++.+++.+--
T Consensus 89 ~~~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~g~~g~l~gK~~~~i~t~g 148 (211)
T 3p0r_A 89 QFLEADKVVFGFPLWNLTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKIALLNARG 148 (211)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEECCTTCCEESCTTCEEEEEEEES
T ss_pred HHHhCCEEEEEcChhcccCCHHHHHHHHHHhccCceeccCCCCCccCCCCCEEEEEEeCC
Confidence 4778999999998654322344455666653211 13568887777644
No 272
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=40.09 E-value=58 Score=19.35 Aligned_cols=47 Identities=9% Similarity=0.056 Sum_probs=27.7
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHhcC---CCCCCCeEEEEeeC
Q 044598 8 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNE---DELRDAVLLVFANK 54 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~iiv~nK 54 (110)
-+..||++|+....-...-....+.++..+... ..+.++|++++.+-
T Consensus 76 ~l~~AD~iI~~sP~y~~~~p~~lK~~iDr~~~~~~~~~l~gK~~~~i~t~ 125 (242)
T 1sqs_A 76 ELLESDIIIISSPVYLQNVSVDTKNFIERIGGWSHLFRLAGKFVVTLDVA 125 (242)
T ss_dssp HHHHCSEEEEEEEECSSSCCHHHHHHHHHTGGGTTTTTTTTCEEEEEEEE
T ss_pred HHHHCCEEEEEccccccCCCHHHHHHHHHHHHhccccccCCCEEEEEEeC
Confidence 467899999998765422223334455544211 13457888887765
No 273
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=39.88 E-value=66 Score=19.90 Aligned_cols=47 Identities=15% Similarity=-0.005 Sum_probs=27.7
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCC
Q 044598 8 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 58 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 58 (110)
..+.||.+|+|+..... +.......+..+... .....-+|+|+.|..
T Consensus 221 l~~~aD~vllVv~~~~~-~~~~~~~~~~~l~~~---g~~~~GvVlN~v~~~ 267 (286)
T 3la6_A 221 VGRHVGTTLMVARYAVN-TLKEVETSLSRFEQN---GIPVKGVILNSIFRR 267 (286)
T ss_dssp HTTTCSEEEEEEETTTS-BHHHHHHHHHHHHHT---TCCCCEEEEEEECCC
T ss_pred HHHHCCeEEEEEeCCCC-cHHHHHHHHHHHHhC---CCCEEEEEEcCcccc
Confidence 45679999999987642 333333333332211 224466888999864
No 274
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=37.47 E-value=61 Score=18.83 Aligned_cols=31 Identities=6% Similarity=-0.012 Sum_probs=19.8
Q ss_pred HhcccCCEEEEEEECCChhhHHHHHHHHHHH
Q 044598 7 HYFQNTQGLIFVVDSNDRDRVVEARDELHRM 37 (110)
Q Consensus 7 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~ 37 (110)
.-+..||++|+....-...-....+.|++.+
T Consensus 66 ~~l~~AD~iV~~~P~y~~s~pa~LK~~iDrv 96 (204)
T 2amj_A 66 QNFLWADVVIWQMPGWWMGAPWTVKKYIDDV 96 (204)
T ss_dssp HHHHHCSEEEEEEECBTTBCCHHHHHHHHHH
T ss_pred HHHHhCCEEEEECCccccCCCHHHHHHHHHH
Confidence 3577899999999865432233445566654
No 275
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=37.18 E-value=62 Score=18.80 Aligned_cols=62 Identities=8% Similarity=0.044 Sum_probs=36.0
Q ss_pred HHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCC-CCHHHHHhhhC
Q 044598 6 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-MNAAEITDKLG 71 (110)
Q Consensus 6 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~-~~~~~~~~~~~ 71 (110)
...+..+|.++++++.. ..+.......+..+... .....-+|.|+.+.... ...+++.+.++
T Consensus 128 ~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~---~~~~~~vv~N~~~~~~~~~~~~~~~~~~~ 190 (237)
T 1g3q_A 128 MSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKKA---GLAILGFVLNRYGRSDRDIPPEAAEDVME 190 (237)
T ss_dssp HHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHHT---TCEEEEEEEEEETSCTTCCCHHHHHHHHC
T ss_pred HHHHHHCCeEEEEecCC-cccHHHHHHHHHHHHhC---CCceEEEEEecCCcccchhHHHHHHHHhC
Confidence 44577899999999875 34454444444333221 22457789999986433 23444444444
No 276
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=36.23 E-value=51 Score=18.65 Aligned_cols=50 Identities=14% Similarity=0.088 Sum_probs=28.1
Q ss_pred HhcccCCEEEEEEECCChhhHHHHHHHHHHHhc---CCCCCCCeEEEEeeCCC
Q 044598 7 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLN---EDELRDAVLLVFANKQD 56 (110)
Q Consensus 7 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~iiv~nK~D 56 (110)
.-+..+|++|+....-...-....+.++..+.. ...+.++|+.++++-..
T Consensus 67 ~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~ 119 (200)
T 2a5l_A 67 EDLKNCAGLALGSPTRFGNMASPLKYFLDGTSSLWLTGSLVGKPAAVFTSTAS 119 (200)
T ss_dssp HHHHTCSEEEEEEECBTTBCCHHHHHHHHTCHHHHHHTTTTTCEEEEEEEBSC
T ss_pred HHHHHCCEEEEEcChhccCccHHHHHHHHHHHHHhhccccCCCEEEEEEecCC
Confidence 346789999999876432212223333433211 11346788888887643
No 277
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=33.89 E-value=81 Score=19.19 Aligned_cols=50 Identities=4% Similarity=0.007 Sum_probs=27.8
Q ss_pred HhcccCCEEEEEEECCChhhHHHHH---HHHHHHhcCCCCCCCe-EEEEeeCCCCC
Q 044598 7 HYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAV-LLVFANKQDLP 58 (110)
Q Consensus 7 ~~~~~~~~~i~v~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~iiv~nK~Dl~ 58 (110)
..+..+|.+|+++.+.. .+..... ..+........ .+.+ .-+|.|+.|..
T Consensus 172 ~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~-~~~~~~gvv~n~~~~~ 225 (298)
T 2oze_A 172 NAIVASDYVMIPLQAEE-ESTNNIQNYISYLIDLQEQFN-PGLDMIGFVPYLVDTD 225 (298)
T ss_dssp HHHHHCSEEEEEECGGG-CCHHHHHHHHHHHHHHHHHHC-TTCEEEEEEEEESCTT
T ss_pred HHHHHCCeEEEEecCcH-HHHHHHHHHHHHHHHHHHHhC-CCCeEEEEEEEEECCC
Confidence 34556999999997652 2333332 23333211111 3456 45899999864
No 278
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*
Probab=32.86 E-value=48 Score=18.26 Aligned_cols=46 Identities=11% Similarity=0.119 Sum_probs=25.4
Q ss_pred hcccCCEEEEEEECCCh-hhHHHHHHHHHHHhcCCCCCCCeEEEEeeC
Q 044598 8 YFQNTQGLIFVVDSNDR-DRVVEARDELHRMLNEDELRDAVLLVFANK 54 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK 54 (110)
-+.++|.+++....-.. ........++.. +....+.++++.++++-
T Consensus 43 ~l~~~d~ii~g~p~y~~g~~p~~~~~fl~~-l~~~~l~~k~~~~f~tg 89 (169)
T 1obo_A 43 DLNDYQYLIIGCPTLNIGELQSDWEGLYSE-LDDVDFNGKLVAYFGTG 89 (169)
T ss_dssp GGGGCSEEEEEEEEETTTEECHHHHHHHTT-GGGCCCTTCEEEEEEEC
T ss_pred HHhhCCEEEEEEeeCCCCcCCHHHHHHHHH-hhhcCcCCCEEEEEEEC
Confidence 35678999998865321 111222223332 22234567888888884
No 279
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=29.84 E-value=91 Score=18.54 Aligned_cols=47 Identities=9% Similarity=0.033 Sum_probs=26.1
Q ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCe-EEEEeeCCCC
Q 044598 10 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDL 57 (110)
Q Consensus 10 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~Dl 57 (110)
..||.+|+++.++ ..+.......+..+.......+.+ .-+|.|+.+.
T Consensus 139 ~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 186 (269)
T 1cp2_A 139 GKAQEIYIVASGE-MMALYAANNISKGIQKYAKSGGVRLGGIICNSRKV 186 (269)
T ss_dssp TSCCEEEEEECSS-HHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSS
T ss_pred hhCCEEEEeecCc-hhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCc
Confidence 4689999999875 334444433333222111112344 4688999874
No 280
>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens}
Probab=29.82 E-value=71 Score=18.19 Aligned_cols=49 Identities=12% Similarity=0.064 Sum_probs=27.1
Q ss_pred HhcccCCEEEEEEECCChhhHHHHHHHHHHHh---cCCCCCCCeEEEEeeCC
Q 044598 7 HYFQNTQGLIFVVDSNDRDRVVEARDELHRML---NEDELRDAVLLVFANKQ 55 (110)
Q Consensus 7 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~~~~iiv~nK~ 55 (110)
.-+..+|++|+....-.-.-......++..+. ....+.++|+.++.+-.
T Consensus 50 ~~l~~~D~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~f~s~g 101 (193)
T 3d7n_A 50 AALDAADAIIFGTPTYMGGPSWQFKKFADASSKPWFSAKWQDKVFGGFTNSA 101 (193)
T ss_dssp HHHHHCSEEEEEEEEETTEECHHHHHHHHHTHHHHHTTTTTTCEEEEEEEES
T ss_pred HHHHHCCEEEEEeCccCCCccHHHHHHHHHhhhhccccccCCCEEEEEEECC
Confidence 34678999999876432111122333343322 12234678888888763
No 281
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=29.49 E-value=48 Score=21.77 Aligned_cols=20 Identities=15% Similarity=0.155 Sum_probs=16.1
Q ss_pred hHHHhcccCCEEEEEEECCC
Q 044598 4 LWRHYFQNTQGLIFVVDSND 23 (110)
Q Consensus 4 ~~~~~~~~~~~~i~v~d~~~ 23 (110)
.+..+++++|++++|+|+++
T Consensus 108 ~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 108 AFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp HHHHHHTTCSEEEEEEECCC
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 34566789999999999864
No 282
>3tnt_A SARS coronavirus main protease; 3C-like protease, hydrolase-hydrolase inhibitor CO; HET: G85; 1.59A {Sars coronavirus} PDB: 1uk2_A 1uk3_A 1uk4_A 1z1i_A 2a5a_A 1uj1_A* 2bx3_A 2bx4_A 2c3s_A 2a5i_A 2gt7_A* 2gx4_A* 2gz7_A* 2gz8_A* 2gz9_A 2duc_A 2hob_A* 2v6n_A* 2z3c_A* 2z3d_A* ...
Probab=28.59 E-value=33 Score=21.63 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=20.1
Q ss_pred eecccCCCHHHHHHHHHHHHHhhc
Q 044598 85 TCATSGEGLYEGLDWLSNNIANKV 108 (110)
Q Consensus 85 ~Sa~~~~~i~~l~~~l~~~~~~~~ 108 (110)
.+|++|..++.++..|.+.+.+.+
T Consensus 253 Laa~TGVsVe~lL~aI~~ll~~g~ 276 (306)
T 3tnt_A 253 LSAQTGIAVLDMCAALKELLQNGM 276 (306)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCc
Confidence 579999999999999998766543
No 283
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=28.30 E-value=1e+02 Score=19.63 Aligned_cols=33 Identities=15% Similarity=0.245 Sum_probs=21.4
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEee
Q 044598 14 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFAN 53 (110)
Q Consensus 14 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~n 53 (110)
-+|+.+|+..- |.+.. ...++.+.++|++|..|
T Consensus 3 R~I~hiD~d~F--yasvE-----~~~~P~L~~kPv~V~~~ 35 (356)
T 4dez_A 3 KWVLHVDLDQF--LASVE-----LRRRPDLRGQPVIVGGS 35 (356)
T ss_dssp EEEEEEEETTH--HHHHH-----HHHCGGGTTSCEEEEEC
T ss_pred eEEEEEcCCcH--HHHHH-----hhhCccccCCeEEEEeC
Confidence 47888998753 33332 23355667899888765
No 284
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=27.71 E-value=38 Score=18.70 Aligned_cols=46 Identities=9% Similarity=-0.005 Sum_probs=24.8
Q ss_pred hcccCCEEEEEEECCChh-hHHHHHHHHHHHhcCCCCCCCeEEEEeeC
Q 044598 8 YFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANK 54 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiv~nK 54 (110)
-+.++|.+++....-... .......++. .+....+.++++.++++-
T Consensus 43 ~l~~~d~ii~g~pty~~g~~p~~~~~f~~-~l~~~~l~gk~~~~f~t~ 89 (169)
T 1czn_A 43 DLNAYDYLIIGCPTWNVGELQSDWEGIYD-DLDSVNFQGKKVAYFGAG 89 (169)
T ss_dssp GGGGCSEEEEECCEETTTEECHHHHHHGG-GGGGSCCTTCEEEEEEEC
T ss_pred HHhhCCEEEEEecccCCCcCCHHHHHHHH-HhhhhccCCCEEEEEEEC
Confidence 356789998877542211 1122222232 223334567898888874
No 285
>3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN PG4; 2.24A {Gluconacetobacter hansenii}
Probab=33.32 E-value=13 Score=21.69 Aligned_cols=48 Identities=4% Similarity=0.079 Sum_probs=25.3
Q ss_pred HhcccCCEEEEEEECCChhhHHHHHHHHHHHhcC--CCCCCCeEEEEeeC
Q 044598 7 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNE--DELRDAVLLVFANK 54 (110)
Q Consensus 7 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~iiv~nK 54 (110)
.-+..||++|++...-...-....+.++..+... ..+.++|+.++.+-
T Consensus 69 ~~i~~AD~iIi~tP~Y~~s~p~~lK~~iD~l~~~~~~~l~gK~v~~v~ts 118 (199)
T 3s2y_A 69 QQIATADAVVIVTPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTAS 118 (199)
Confidence 3567899999987654321112223333332110 02467888887754
No 286
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=27.18 E-value=63 Score=18.57 Aligned_cols=48 Identities=8% Similarity=0.148 Sum_probs=26.3
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHh---cCCCCCCCeEEEEeeCC
Q 044598 8 YFQNTQGLIFVVDSNDRDRVVEARDELHRML---NEDELRDAVLLVFANKQ 55 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~~~~iiv~nK~ 55 (110)
-+..+|++|+....-.-.-....+.++..+. ....+.++++.++.+-.
T Consensus 75 ~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g 125 (211)
T 1ydg_A 75 DLEWAEAIVFSSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQ 125 (211)
T ss_dssp HHHHCSEEEEEEEEETTEECHHHHHHHHTTHHHHHTTTTTTCEEEEEEEES
T ss_pred HHHHCCEEEEEcCccccCccHHHHHHHHHhccccccccCCCCEEEEEEeCC
Confidence 4678999999886533111122333444321 11234678887777643
No 287
>1xcr_A Hypothetical protein PTD012; structural genomics, zinc-containing fold, splice variant, A buffer, metal binding protein; 1.70A {Homo sapiens} SCOP: d.290.1.2
Probab=27.07 E-value=26 Score=22.42 Aligned_cols=31 Identities=10% Similarity=0.079 Sum_probs=24.6
Q ss_pred ceEEEeeecccCCCHHHHHHHHHHHHHhhcC
Q 044598 79 HWYIQSTCATSGEGLYEGLDWLSNNIANKVG 109 (110)
Q Consensus 79 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 109 (110)
+-+++.++|+...|-.+....|.+.+.+++|
T Consensus 168 pG~VlkV~ak~RtG~~~fv~ciR~~L~~~Yg 198 (316)
T 1xcr_A 168 PGKVIEVKAKRRTGPLNFVTCMRETLEKHYG 198 (316)
T ss_dssp CCEEEEEEEEEECSSCCHHHHHHHHHHHHHT
T ss_pred CCCeEEEEeeeecCCccHHHHHHHHHHHHcC
Confidence 3479999998888877888888888877765
No 288
>3u7i_A FMN-dependent NADH-azoreductase 1; structural genomics, the center for structural genomics of I diseases, csgid, oxidoreductase; HET: MSE; 1.75A {Bacillus anthracis}
Probab=26.89 E-value=1e+02 Score=18.22 Aligned_cols=51 Identities=12% Similarity=0.193 Sum_probs=31.0
Q ss_pred HHhcccCCEEEEEEECCChhhHHHHHHHHHHHhcCC------------CC-CCCeEEEEeeCCC
Q 044598 6 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNED------------EL-RDAVLLVFANKQD 56 (110)
Q Consensus 6 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~------------~~-~~~~~iiv~nK~D 56 (110)
..-+..||++|+....-...-....+.++..+.... .+ .+++++++.+--.
T Consensus 89 ~~~~~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~g~~f~~~~~g~~~~l~~gK~~~~i~t~gg 152 (223)
T 3u7i_A 89 LQQFKSANTYVIVLPLHNFNIPSKLKDYMDNIMIARETFKYTETGSVGLLKDGRRMLVIQASGG 152 (223)
T ss_dssp HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEEECSSCEEESCCSSCEEEEEEECSS
T ss_pred HHHHHhCCEEEEEcChhhccCCHHHHHHHHHHhhcCCceecCCCCCcccccCCCEEEEEEeCCC
Confidence 345678999999998654322344456666654321 13 4678877776544
No 289
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=26.04 E-value=1.1e+02 Score=19.75 Aligned_cols=33 Identities=12% Similarity=0.178 Sum_probs=21.5
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeC
Q 044598 15 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANK 54 (110)
Q Consensus 15 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK 54 (110)
+|+.+|+.+- |.+.. ...++.+.++|+++..+.
T Consensus 2 ~i~hiD~d~F--yasvE-----~~~~P~L~~~Pv~V~~~~ 34 (362)
T 4f4y_A 2 IVIFVDFDYF--FAQVE-----EVLNPQYKGKPLVVCVYS 34 (362)
T ss_dssp CEEEEECTTH--HHHHH-----HHHCGGGTTSCEEEEEEC
T ss_pred EEEEEecCCH--HHHHH-----hHhCccccCCeEEEecCC
Confidence 5788998753 33322 233556678999999863
No 290
>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A*
Probab=24.67 E-value=69 Score=17.92 Aligned_cols=45 Identities=11% Similarity=0.130 Sum_probs=24.4
Q ss_pred hcccCCEEEEEEECC-ChhhHHHHHHHHHHHhcCCCCCCCeEEEEee
Q 044598 8 YFQNTQGLIFVVDSN-DRDRVVEARDELHRMLNEDELRDAVLLVFAN 53 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~n 53 (110)
-+.+.|.+++....- .-........++.. +....+.++++.++++
T Consensus 42 ~l~~~d~ii~g~pt~~~G~~p~~~~~f~~~-l~~~~l~gk~vavfg~ 87 (175)
T 1ag9_A 42 DLEAYDILLLGIPTWYYGEAQCDWDDFFPT-LEEIDFNGKLVALFGC 87 (175)
T ss_dssp HHHTCSEEEEECCEETTTEECHHHHHHHHH-HTTCCCTTCEEEEEEE
T ss_pred HhhhCCEEEEEEeecCCCcChHHHHHHHhh-hhhcccCCCEEEEEEE
Confidence 356788888877541 11111222333333 3333456788888887
No 291
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=24.65 E-value=85 Score=16.50 Aligned_cols=45 Identities=11% Similarity=0.123 Sum_probs=25.2
Q ss_pred hcccCCEEEEEEECCChhhHH--HHHHHHHHHhcCCCCCCCeEEEEeeC
Q 044598 8 YFQNTQGLIFVVDSNDRDRVV--EARDELHRMLNEDELRDAVLLVFANK 54 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~iiv~nK 54 (110)
-+.++|.+++....-...... ....++..+... +.++++.++++-
T Consensus 42 ~l~~~d~iiig~pty~~g~~p~~~~~~fl~~l~~~--l~~k~~~~f~t~ 88 (138)
T 5nul_A 42 ELLNEDILILGCSAMTDEVLEESEFEPFIEEISTK--ISGKKVALFGSY 88 (138)
T ss_dssp HHTTCSEEEEEECCBTTTBCCTTTHHHHHHHHGGG--CTTCEEEEEEEE
T ss_pred HHhhCCEEEEEcCccCCCCCChHHHHHHHHHHHhh--cCCCEEEEEEec
Confidence 356789888888653211111 233344444322 467888888874
No 292
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=24.59 E-value=1.8e+02 Score=20.29 Aligned_cols=58 Identities=12% Similarity=-0.005 Sum_probs=36.1
Q ss_pred CCCeEEEEeeCCCCCCCCCHHHHHhhhCCCcccCcceEEEeeecccCCCHHHHHHHHHHHHHh
Q 044598 44 RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 106 (110)
Q Consensus 44 ~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 106 (110)
.+.|+++..|+.........+.+.+.+ ...+..+..+=++-|+|-.++-+.+.+.+.+
T Consensus 373 fGvpvVVaiN~F~tDT~aEi~~v~~~~-----~~~G~~~~~~wa~GG~G~~~LA~~Vv~~~~~ 430 (557)
T 3pzx_A 373 FGVPAVVAINAFPTDTEAELNLLYELC-----AKAGAEVALSWAKGGEGGLELARKVLQTLES 430 (557)
T ss_dssp TTCCEEEEEECCTTCCHHHHHHHHHHC-----CSSEEEEECHHHHGGGGGHHHHHHHHHHHHH
T ss_pred cCCCeEEEEeCCCCCCHHHHHHHHHHH-----HHcCCCEEEEecccchhHHHHHHHHHHHHhc
Confidence 589999999997642221112223332 2344454444577888988888888877653
No 293
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=23.85 E-value=62 Score=18.25 Aligned_cols=50 Identities=14% Similarity=0.133 Sum_probs=26.8
Q ss_pred HhcccCCEEEEEEECCChhhHHHHHHHHHHHhc---CCCCCCCeEEEEeeCCC
Q 044598 7 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLN---EDELRDAVLLVFANKQD 56 (110)
Q Consensus 7 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~iiv~nK~D 56 (110)
.-+..+|++|+....-.-.-....+.++..+.. ...+.++|+.++.+-..
T Consensus 64 ~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~ 116 (198)
T 3b6i_A 64 QELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGT 116 (198)
T ss_dssp GGGGGCSEEEEEEEEETTEECHHHHHHHTTCHHHHHHTTTTTCEEEEEEEESS
T ss_pred HHHHHCCEEEEEeChhcCCchHHHHHHHHHhhhhhhhcccCCCEEEEEEeCCC
Confidence 346789999998865431111222333332211 11346788888877643
No 294
>3rl5_A Metallophosphoesterase mpped2; alpha-beta fold, metallophosphodiesterase, active site mutan nucleotide polymorphism, hydrolase; 1.26A {Rattus norvegicus} PDB: 3rl3_A* 3rl4_A*
Probab=21.32 E-value=1.5e+02 Score=18.72 Aligned_cols=46 Identities=17% Similarity=0.127 Sum_probs=25.6
Q ss_pred cccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCC
Q 044598 9 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 57 (110)
Q Consensus 9 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl 57 (110)
+.++|++|+.-|.++.....+....+. .++. ....++++|.--.|.
T Consensus 77 i~~~D~vi~aGDl~~~g~~~e~~~~~~-~L~~--l~~~~v~~V~GNHD~ 122 (296)
T 3rl5_A 77 MPYGDILLHTGDFTELGLPSEVKKFND-WLGN--LPYEYKIVIAGNHEL 122 (296)
T ss_dssp CCSCSEEEECSCCSSSCCHHHHHHHHH-HHHT--SCCSEEEECCCTTCG
T ss_pred cCCCCEEEECCcccCCCCHHHHHHHHH-HHHh--CCCCeEEEEcCCccc
Confidence 467899999999987544433332222 2222 133455555555564
No 295
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=21.21 E-value=1.5e+02 Score=18.35 Aligned_cols=45 Identities=9% Similarity=-0.083 Sum_probs=23.6
Q ss_pred cccCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCe-EEEEeeCCCCC
Q 044598 9 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLP 58 (110)
Q Consensus 9 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~Dl~ 58 (110)
...+|.+|+|+..... ........+..+. . .+.+ .-+|.|+.|..
T Consensus 234 ~~~ad~vilV~~~~~~-~~~~~~~~~~~l~-~---~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 234 GRSVGTSLLVARFGLN-TAKEVSLSMQRLE-Q---AGVNIKGAILNGVIKR 279 (299)
T ss_dssp GGGCSEEEEEEETTTS-CTTHHHHHHHHHH-H---TTCCCCCEEEEECCCC
T ss_pred HHHCCEEEEEEcCCCC-hHHHHHHHHHHHH-h---CCCCeEEEEEeCCccC
Confidence 4568899999876532 2222222222222 1 1222 33777998853
No 296
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=21.03 E-value=1.3e+02 Score=17.12 Aligned_cols=43 Identities=7% Similarity=0.067 Sum_probs=24.0
Q ss_pred cCCEEEEEEECCChh-hHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCC
Q 044598 11 NTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDL 57 (110)
Q Consensus 11 ~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl 57 (110)
++|.+++.-|..+.. ..+.....+..+ .. .+.|+++|.---|.
T Consensus 32 ~~D~vi~~GDl~~~~~~~~~~~~~~~~l-~~---~~~pv~~v~GNHD~ 75 (228)
T 1uf3_A 32 GADAIALIGNLMPKAAKSRDYAAFFRIL-SE---AHLPTAYVPGPQDA 75 (228)
T ss_dssp TCSEEEEESCSSCTTCCHHHHHHHHHHH-GG---GCSCEEEECCTTSC
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHH-Hh---cCCcEEEECCCCCc
Confidence 789999999987643 333333333333 22 24566555444464
No 297
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=20.57 E-value=66 Score=15.85 Aligned_cols=16 Identities=6% Similarity=0.225 Sum_probs=12.1
Q ss_pred hcccCCEEEEEEECCC
Q 044598 8 YFQNTQGLIFVVDSND 23 (110)
Q Consensus 8 ~~~~~~~~i~v~d~~~ 23 (110)
.+.+|+++++|++.+.
T Consensus 36 vLCdaeV~livfs~~g 51 (77)
T 1egw_A 36 VLCDCEIALIIFNSSN 51 (77)
T ss_dssp HHTTCEEEEEEECTTC
T ss_pred cccCCeEEEEEECCCC
Confidence 4668899999987654
Done!