Query 044599
Match_columns 542
No_of_seqs 231 out of 1090
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 04:54:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044599.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044599hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02258 9-cis-epoxycarotenoid 100.0 7E-131 2E-135 1082.1 51.5 481 50-542 75-590 (590)
2 PLN02491 carotenoid 9,10(9',10 100.0 6E-127 1E-131 1048.2 48.2 481 52-542 20-543 (545)
3 COG3670 Lignostilbene-alpha,be 100.0 5E-112 1E-116 880.6 36.1 435 86-536 20-489 (490)
4 PF03055 RPE65: Retinal pigmen 100.0 2E-105 4E-110 874.1 32.8 433 89-535 1-486 (486)
5 PLN02969 9-cis-epoxycarotenoid 100.0 2E-100 4E-105 849.6 44.2 436 88-535 60-610 (610)
6 KOG1285 Beta, beta-carotene 15 100.0 1.3E-77 2.7E-82 651.6 27.3 474 53-542 72-582 (582)
7 KOG1285 Beta, beta-carotene 15 100.0 1.5E-27 3.2E-32 260.5 27.1 331 104-441 37-426 (582)
8 PF06433 Me-amine-dh_H: Methyl 88.2 38 0.00083 35.9 19.8 259 202-523 17-290 (342)
9 COG2706 3-carboxymuconate cycl 78.8 94 0.002 33.0 24.1 261 204-518 68-343 (346)
10 PF02239 Cytochrom_D1: Cytochr 59.6 33 0.00072 36.7 7.9 75 419-521 45-119 (369)
11 TIGR02658 TTQ_MADH_Hv methylam 48.5 3.7E+02 0.008 28.7 24.4 251 203-523 28-300 (352)
12 TIGR02276 beta_rpt_yvtn 40-res 36.3 1.1E+02 0.0023 21.0 5.1 27 499-528 13-39 (42)
13 PF13360 PQQ_2: PQQ-like domai 29.0 1.8E+02 0.0038 27.8 7.0 65 437-523 3-67 (238)
No 1
>PLN02258 9-cis-epoxycarotenoid dioxygenase NCED
Probab=100.00 E-value=7.2e-131 Score=1082.12 Aligned_cols=481 Identities=43% Similarity=0.810 Sum_probs=437.1
Q ss_pred CCCCCCCChhHHHHHHHHHHHhhhc--CCCCCCCCCCcccccCCCcccccCCCCccceeeccCCCCCcceEEeecCCCCC
Q 044599 50 PKKRAEPTIPTIILNACDDIINNFI--DPPLKYSVDPRHVLSDNFAPVDELPPTECEVVQGSLPSCLDGAYIRNGPNPQY 127 (542)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~~~~p~~~l~gnfapv~E~~~~~~~~V~G~IP~~L~Gt~~RNGP~p~~ 127 (542)
++.++.|++++++||++|+.|.+++ .+|++++.||+++|+|||+|+.|+++..+++|+|+||+||+|+||||||||++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~faPv~ee~~~~~l~V~G~IP~~L~Gty~RNGPnp~f 154 (590)
T PLN02258 75 PQLNPLQRAAAAALDAVESALVSHLERQHPLPKTADPAVQIAGNFAPVPEQPVRHNLPVTGRIPDCIDGVYVRNGANPLF 154 (590)
T ss_pred cccCcchhhHHHHHHHHHHHHhhhccccCCCCCCCCcceeccCCCcCccccCCcccceEEeeCCCCCCeEEEEeCCCCCC
Confidence 4457899999999999999888773 46899999999999999999977777778899999999999999999999999
Q ss_pred CCCCCccCcCCCcceEEEEeecCceeEEEEeecchhhHHhhhcCCCCCcccccCCCC-----------------C-----
Q 044599 128 LPRGPYHLFDGDGMLHSIKISRGRATLCSRYVRTYKYTIENEAGSPILPNVFSGFNG-----------------L----- 185 (542)
Q Consensus 128 ~~~~~~HwFDGdGmlh~~~f~~G~v~y~sRyV~T~~~~~E~~~g~~~f~~~~s~~~~-----------------~----- 185 (542)
.+.+++||||||||||+|+|++|+|+|+||||||++|++|+++|+++|++.++.+++ .
T Consensus 155 ~p~~~~H~FDGDGMvhav~f~dG~a~y~~RfVrT~~~~~E~~agr~l~~~~~g~~~~~~g~~r~~~~~~r~~~~~~d~~~ 234 (590)
T PLN02258 155 EPVAGHHLFDGDGMVHAVRIGNGSASYACRFTETNRLVQERALGRPVFPKAIGELHGHSGIARLMLFYARGLFGLVDASR 234 (590)
T ss_pred CCCCCCccccCCceEEEEEECCCeEEEEeeeecchhHHHHHhcCCcccccccccccccccccccchhhcccccccccccc
Confidence 888889999999999999999999999999999999999999999999875544321 0
Q ss_pred CcCccchhh--hHhHHhc----cCCEEeecCCCCCcceeecccCCCcccccccCCCccCCCCCcEEEEEEcCC-CCcEEE
Q 044599 186 TASAARGAL--SAARLLA----DLPYAIRLTPNGDIETIGRHDFDGKLAMSMTAHPKLDSDTGEAFAFRYGPV-PPFLTY 258 (542)
Q Consensus 186 ~~~~an~~~--~~~rlla----~~Py~i~i~p~~tLeT~G~~d~~g~l~~~ftAHPk~Dp~tGel~~f~~~~~-~p~~~~ 258 (542)
..+.||+++ +.+|+|| |+||++++++++||||+|++||+|+|..+||||||+||+|||||+|+|+.. +|+++|
T Consensus 235 ~~~~ANT~vv~~~grLlAL~E~g~Py~l~~d~~~TLeT~G~~df~g~l~~~ftAHPKvDP~TGel~~f~y~~~~~p~l~~ 314 (590)
T PLN02258 235 GTGVANAGLVYFNGRLLAMSEDDLPYQVRITGDGDLETVGRYDFDGQLDSSMIAHPKVDPVTGELFALSYDVVKKPYLKY 314 (590)
T ss_pred ccCCCceeEEEECCEEEEEEcCCCceEecCCCCCCcccCcccccCCccCcccccCceEcCCCCeEEEEEEeccCCCcEEE
Confidence 125677765 7789988 899999999888999999999999998899999999999999999999975 599999
Q ss_pred EEEcCCCCccceeecccCCCCceeeeeecCCcEEEEEecccccChHHHHhCCCCCeeeCCCCCeEEEEEeCCCCCCCceE
Q 044599 259 FRFDANGKKQPNVPIFSMTRPSFLHDFAITKKYAVFVDIQIGMNPMEMIFGGGSPVGADPAKVCRIGIIPRYATDESQMR 338 (542)
Q Consensus 259 ~~~~~~G~~~~~v~i~~~~~p~~iHDfaiTeny~Vf~~~pl~~~~~~~l~~g~~~~~~d~~~~tr~~VipR~~~~~~~v~ 338 (542)
|++|++|++.+.++| +++.++|||||||||||+||+++|+++++.+|+ .|++++.||+++++|||||||++++.++++
T Consensus 315 ~~~d~~G~~~~~~~i-~lp~p~~~HDFaiTenY~Vf~d~Pl~~~~~~~~-~g~~~~~~d~~~~srfgVipR~~~~~~~ir 392 (590)
T PLN02258 315 FRFSPDGEKSPDVEI-PLDQPTMMHDFAITENFVVIPDQQVVFKLSEMI-RGGSPVVYDKNKTSRFGVLPKNATDASEIQ 392 (590)
T ss_pred EEECCCCCEEeeEEe-eCCCCccccceeccCceEEEEccCceEcHHHHh-hCCCceEECCCCCcEEEEEECCCCCCCceE
Confidence 999999999998888 899999999999999999999999999999998 677999999999999999999987667899
Q ss_pred EeecCCeeEeeecccccCCCCCEEEEEeecCCCcccccccc-ccccceEEEEEEeCCCCcEEEEEccC---CCCcCcccC
Q 044599 339 WFEVPGFNIIHAINAWDEEDGNAVVMVAPNILSVEHTLDRT-DLVHALVEKVRIDLRTGIVTRRPMSA---RNLDFGVIN 414 (542)
Q Consensus 339 w~e~p~~f~fH~~NA~Ee~dg~~Ivl~~~~~~~~~~~~~~~-~~~~~~L~r~ridl~tg~v~~~~L~~---~~~EfP~In 414 (542)
||++|+||+||++|||||+++++||+++|++.+.+.+++.. +..+++|+|||||++||+++++.|.+ .++|||+||
T Consensus 393 wfe~p~~f~fH~~NA~Ee~~~~~VVvd~~~~~~~~~~~~~~~~~~~~~L~r~ridl~tg~~~~~~l~~~~~~~~EFP~In 472 (590)
T PLN02258 393 WVEVPDCFCFHLWNAWEEPETDEVVVIGSCMTPPDSIFNESDESLRSVLSEIRLNLRTGESTRRPIISGEQVNLEAGMVN 472 (590)
T ss_pred EEecCCcEEEecccccccCCCCeEEEEEecccChhhhcccccccccceEEEEEEECCCCceeeeEeecCCCcccccceEC
Confidence 99999999999999999866568999999987766555443 35678999999999999999888865 799999999
Q ss_pred ccCCCCCCcEEEEeeCCCCCCcccEEEeeccCCCcccceeEEEEEcCCCccCCCcEEeecCCCCCCCCCCCcEEEEEEEc
Q 044599 415 PAYMAKKSRYVYAAVGDPMPKISGVVKLDVSKGDERRDCIVATRIFGPGCYGGEPFFVARDPENPETEEDDGYVVSYVHD 494 (542)
Q Consensus 415 ~~~~Gr~~Ry~Y~~~~~~~~~~~gi~K~Dl~tg~~~~~~~~~~~~~~~g~~~gEPiFVPr~~~~~~~~EDDG~Lls~V~d 494 (542)
++|.||+|||+|+++.++++++++|+|+|+++| + ++.|++|++||+|||+||||++++ .+|||||||++|||
T Consensus 473 ~~~~Grk~Ry~Y~~~~~~~~~~~givK~Dl~tg-~-----~~~~~~g~g~~~gEPvFVPr~~~~--~~EDDGylls~V~d 544 (590)
T PLN02258 473 RNLLGRKTRYAYLAIAEPWPKVSGFAKVDLSTG-E-----VKKYIYGEGRYGGEPFFVPRGSGS--EAEDDGYILAFVHD 544 (590)
T ss_pred HHHCCCccceEEEeccCCCCCCCeEEEEECCCC-c-----EEEEECCCCccccCCEeccCCCCC--cccCCcEEEEEEEE
Confidence 999999999999998888889999999999999 3 788999999999999999998432 35999999999999
Q ss_pred CCCCeeEEEEEeCCCCCCCeeEEEEcCCcCCCCccccccccchhhccC
Q 044599 495 ENTGESKFLVMDAKSPRLDIVAAVKLPRRVPYGFHGLFVRQADLDKLL 542 (542)
Q Consensus 495 ~~~~~S~l~IlDA~~~~~~pVArv~LP~rvP~GFHG~fv~~~~l~~~~ 542 (542)
+++++|+|+||||++ +++||||+||+||||||||+|+++++|.+|+
T Consensus 545 ~~~~~SeL~IlDA~~--l~~VArv~LP~rVP~GFHG~wv~~~~l~~q~ 590 (590)
T PLN02258 545 EEKGKSELQVVNAVN--LELEATVKLPSRVPYGFHGTFISAEDLLKQA 590 (590)
T ss_pred CCCCceEEEEEeCCC--CcccEEEECCCCCCCcccccccCHHHHhhcC
Confidence 999999999999999 5689999999999999999999999999985
No 2
>PLN02491 carotenoid 9,10(9',10')-cleavage dioxygenase
Probab=100.00 E-value=5.7e-127 Score=1048.15 Aligned_cols=481 Identities=39% Similarity=0.737 Sum_probs=430.6
Q ss_pred CCCCCChhHHHHHHHHHHHhhhcCCCCCCCCCCcccccCCCccc-ccCCCCccceeeccCCCCCcceEEeecCCCCCCCC
Q 044599 52 KRAEPTIPTIILNACDDIINNFIDPPLKYSVDPRHVLSDNFAPV-DELPPTECEVVQGSLPSCLDGAYIRNGPNPQYLPR 130 (542)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~~~l~gnfapv-~E~~~~~~~~V~G~IP~~L~Gt~~RNGP~p~~~~~ 130 (542)
..+.|++++.++|++|+.|.++ ++++.||+++|+|||+|| +|.++..++.|+|+||+||+|+|||||||+++.+.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~g~fapv~~E~~~~~~l~V~G~IP~~L~Gt~~RNGPnp~~~~~ 95 (545)
T PLN02491 20 PRPSKGLTSKAVDLLEKLIVKL----MHDASQPLHYLSGNFAPVRDETPPVKDLPVRGHLPECLNGEFVRVGPNPKFSPV 95 (545)
T ss_pred CchhhhhhHHHHHHHHHHHHhh----ccCCCCCcccccCCCcCccccCCcccCcEEEeeCCCcCCeEEEEeCCCCCCCCC
Confidence 4677889999999999998887 788999999999999999 88876777899999999999999999999998888
Q ss_pred CCccCcCCCcceEEEEeecCceeEEEEeecchhhHHhhhcCCCCCcccccCCCCC----------------------CcC
Q 044599 131 GPYHLFDGDGMLHSIKISRGRATLCSRYVRTYKYTIENEAGSPILPNVFSGFNGL----------------------TAS 188 (542)
Q Consensus 131 ~~~HwFDGdGmlh~~~f~~G~v~y~sRyV~T~~~~~E~~~g~~~f~~~~s~~~~~----------------------~~~ 188 (542)
+.+||||||||||+|+|++|+|+|+||||||++|++|+++|+++|++ ++.++++ ..+
T Consensus 96 ~~~H~FDGDGMlha~~f~~G~a~y~~RfVrT~~~~~E~~ag~~~~~~-~~~~~g~~g~~~~~~~~~r~~~~~~~~~~~~~ 174 (545)
T PLN02491 96 AGYHWFDGDGMIHGMRIKDGKATYVSRYVKTSRLKQEEFFGGAKFMK-IGDLKGLFGLLMVNMQQLRAKLKVLDFSYGNG 174 (545)
T ss_pred CCCccccCCccEEEEEEcCCcEEEEeeeecccchhhhhhcCcccccc-cccccccchhhhhhhhhhhccccccccccCCC
Confidence 88999999999999999999999999999999999999999999986 3322210 135
Q ss_pred ccchhh--hHhHHhc----cCCEEeec-CCCCCcceeecccCCCcccccccCCCccCCCCCcEEEEEEcCCCCcEEEEEE
Q 044599 189 AARGAL--SAARLLA----DLPYAIRL-TPNGDIETIGRHDFDGKLAMSMTAHPKLDSDTGEAFAFRYGPVPPFLTYFRF 261 (542)
Q Consensus 189 ~an~~~--~~~rlla----~~Py~i~i-~p~~tLeT~G~~d~~g~l~~~ftAHPk~Dp~tGel~~f~~~~~~p~~~~~~~ 261 (542)
.||+++ +.+|+|| |+||++++ || +||||+|++||+|+|..+||||||+||+|||||+|+|+..+|+++|+++
T Consensus 175 ~ANT~vi~~~grLlAl~E~g~Py~l~~~Dp-~tLeT~G~~df~g~l~~~~TAHPk~DP~TGel~~fgy~~~~p~~~y~~~ 253 (545)
T PLN02491 175 TGNTALIYHHGKLLALSEADKPYVVKVLED-GDLQTLGLLDYDKRLKHSFTAHPKVDPFTGEMFTFGYSHEPPYITYRVI 253 (545)
T ss_pred CCceeEEEECCEEEEEEcCCCCeEecCCCC-CCcceeeecccCCccCcccccCccCcCCCCCEEEEEecCCCCcEEEEEE
Confidence 777775 6789988 89999997 65 5999999999999999999999999999999999999987799999999
Q ss_pred cCCCCccceeecccCCCCceeeeeecCCcEEEEEecccccChHHHHhCCCCCeeeCCCCCeEEEEEeCCCCCCCceEEee
Q 044599 262 DANGKKQPNVPIFSMTRPSFLHDFAITKKYAVFVDIQIGMNPMEMIFGGGSPVGADPAKVCRIGIIPRYATDESQMRWFE 341 (542)
Q Consensus 262 ~~~G~~~~~v~i~~~~~p~~iHDfaiTeny~Vf~~~pl~~~~~~~l~~g~~~~~~d~~~~tr~~VipR~~~~~~~v~w~e 341 (542)
|++|++.+.+++ +++.|+|||||||||||+||+++|+++++.+|+.+++.++.||+++++|||||||++++.+.++||+
T Consensus 254 ~~~G~~~~~v~i-~l~~~~~~HDFaiTeny~Vf~~~Pl~~~~~~~~~~~~~~~~~d~~~~~r~gVipR~~~~~~~irw~e 332 (545)
T PLN02491 254 SKDGAMHDPVPI-TISEPIMMHDFAITENYAIFMDLPLYFRPKEMVKEKKFIYTFDATKKARFGVLPRYAKDELMIRWFE 332 (545)
T ss_pred CCCCcCcceeEe-ecCCCceeeeeEecCCEEEEEECCcccCHHHHhhCCCceeEECCCCCcEEEEEECCCCCCCceEEEE
Confidence 999999888888 9999999999999999999999999999999986666788999999999999999987667899999
Q ss_pred cCCeeEeeecccccCCCCCEEEEEeecCCCcc-----ccccc-cccccceEEEEEEeCCCCcEEEEEccCCCCcCcccCc
Q 044599 342 VPGFNIIHAINAWDEEDGNAVVMVAPNILSVE-----HTLDR-TDLVHALVEKVRIDLRTGIVTRRPMSARNLDFGVINP 415 (542)
Q Consensus 342 ~p~~f~fH~~NA~Ee~dg~~Ivl~~~~~~~~~-----~~~~~-~~~~~~~L~r~ridl~tg~v~~~~L~~~~~EfP~In~ 415 (542)
+|+||+||++|||||++ +||+++|++.+.+ ..+.. .+...++|+|||||+++|+++++.|++.++|||+||+
T Consensus 333 ~~~~f~fH~~NA~Ee~~--~Ivvd~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~ridl~tg~~~~~~l~~~~~EfP~In~ 410 (545)
T PLN02491 333 LPNCFIFHNANAWEEED--EVVLITCRLENPDLDMVNGKVKEKLENFGNELYEMRFNMKTGAASQKKLSASAVDFPRVNE 410 (545)
T ss_pred cCCceEeecCCccccCC--eEEEEEeccCCCccccccccccccccccCceEEEEEEECCCCceeeeccCCcccccCccCH
Confidence 99999999999999865 8999999875543 11111 2345689999999999999999999999999999999
Q ss_pred cCCCCCCcEEEEeeCCCCCCcccEEEeeccC----CCc---ccceeEEEEEcCCCccCCCcEEeecCCCCCCCCCCCcEE
Q 044599 416 AYMAKKSRYVYAAVGDPMPKISGVVKLDVSK----GDE---RRDCIVATRIFGPGCYGGEPFFVARDPENPETEEDDGYV 488 (542)
Q Consensus 416 ~~~Gr~~Ry~Y~~~~~~~~~~~gi~K~Dl~t----g~~---~~~~~~~~~~~~~g~~~gEPiFVPr~~~~~~~~EDDG~L 488 (542)
+|.||||||+|+++.++++++++|+|+|+++ |+. .++|.+..|++|++||+|||+||||+++. +.+||||||
T Consensus 411 ~~~Grk~ry~Y~~~~~~~~~~~gl~K~D~~t~~~~g~~~~~~~~~~~~~~~~g~~~~~~EPvFVPr~~~~-~~~EDDG~l 489 (545)
T PLN02491 411 SYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPETGKKKLEVGGNVKGIFDLGPGRFGSEAIFVPREPGT-TSEEDDGYL 489 (545)
T ss_pred HHCCCcccEEEEeccCCccCcCeEEEEEecccccCCccccccccceeEEEEcCCCccccCCEEecCCCCC-CcccCCcEE
Confidence 9999999999999888888899999999996 321 24566788999999999999999997441 158999999
Q ss_pred EEEEEcCCCCeeEEEEEeCCCCCCCeeEEEEcCCcCCCCccccccccchhhccC
Q 044599 489 VSYVHDENTGESKFLVMDAKSPRLDIVAAVKLPRRVPYGFHGLFVRQADLDKLL 542 (542)
Q Consensus 489 ls~V~d~~~~~S~l~IlDA~~~~~~pVArv~LP~rvP~GFHG~fv~~~~l~~~~ 542 (542)
|++|||+++++|+|+||||++|+++|||||+||+||||||||+|+++++|++|+
T Consensus 490 l~~V~d~~~~~S~l~VlDAk~~~~~pVA~v~LP~rVP~GfHG~fv~~~~l~~~~ 543 (545)
T PLN02491 490 IFFVHDENTGKSSVNVIDAKTMSADPVAVVELPHRVPYGFHAFFVTEEQLQEQA 543 (545)
T ss_pred EEEEEcCCCCcceEEEEeCCCCCCCeeEEEECCCCCCCCccccCcCHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999998884
No 3
>COG3670 Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=4.8e-112 Score=880.58 Aligned_cols=435 Identities=37% Similarity=0.654 Sum_probs=383.3
Q ss_pred ccccCCCccc-ccCCCCccceeeccCCCCCcceEEeecCCCCCCC-CCCccCcCCCcceEEEEeecC-ceeEEEEeecch
Q 044599 86 HVLSDNFAPV-DELPPTECEVVQGSLPSCLDGAYIRNGPNPQYLP-RGPYHLFDGDGMLHSIKISRG-RATLCSRYVRTY 162 (542)
Q Consensus 86 ~~l~gnfapv-~E~~~~~~~~V~G~IP~~L~Gt~~RNGP~p~~~~-~~~~HwFDGdGmlh~~~f~~G-~v~y~sRyV~T~ 162 (542)
.+++|+|+|+ .|...+....|+|+||++|+|+|||||||++..+ .+.+||||||||||+|.|.+| +|+|+||||||.
T Consensus 20 ~~w~g~~a~~~~E~~~t~L~~V~G~iPa~L~Gtl~RNGP~~l~~~g~~~~HwFDGDGMI~~v~f~~gg~a~yrnrfVrT~ 99 (490)
T COG3670 20 PYWTGGFAPVRTEFDATDLTDVEGRIPADLDGTLYRNGPNPLHRGGIATYHWFDGDGMIHAVAFRDGGRATYRNRFVRTQ 99 (490)
T ss_pred hhhhccCCccceeecccccceeeecCCcccCceEEccCCCccccCCccccCCccCCCeEEEEEecCCCceEEEEEEEeec
Confidence 3589999999 8888877777999999999999999999999887 567999999999999999995 999999999999
Q ss_pred hhHHhhhcCCCCCcccccC------CC---CCCcCccchhh--hHhHHhc----cCCEEeecCCCCCcceeecccCCC-c
Q 044599 163 KYTIENEAGSPILPNVFSG------FN---GLTASAARGAL--SAARLLA----DLPYAIRLTPNGDIETIGRHDFDG-K 226 (542)
Q Consensus 163 ~~~~E~~~g~~~f~~~~s~------~~---~~~~~~an~~~--~~~rlla----~~Py~i~i~p~~tLeT~G~~d~~g-~ 226 (542)
+|.+|++||++++++++.. .+ +..+|.+|+++ +.++|+| |.||+||++ ||+|+|..+|+| .
T Consensus 100 g~~ae~~Ag~~l~~g~~~~~p~~~~~~~~~~~lkn~aNTsVi~~~~~LlalwEgG~pyrLdp~---tL~TlG~~~~~g~~ 176 (490)
T COG3670 100 GYLAENEAGKPLWGGLGETQPPGVRPHSRTGDLKNAANTSVIMHGDELLALWEGGSPYRLDPD---TLETLGKEDFGGDP 176 (490)
T ss_pred eeehhhhcCcceeccccccCCCCcCcCccccccccCCccceEeehhHHHHHHhcCCccccChh---HhhhcChhhcCCCC
Confidence 9999999999999986542 11 22478888876 6678877 999998854 999999999999 5
Q ss_pred ccccccCCCccCCCCCcEEEEEEcCCCCcEEEEEEcCCCCccceeecccCCCCceeeeeecCCcEEEEEecccccCh-HH
Q 044599 227 LAMSMTAHPKLDSDTGEAFAFRYGPVPPFLTYFRFDANGKKQPNVPIFSMTRPSFLHDFAITKKYAVFVDIQIGMNP-ME 305 (542)
Q Consensus 227 l~~~ftAHPk~Dp~tGel~~f~~~~~~p~~~~~~~~~~G~~~~~v~i~~~~~p~~iHDfaiTeny~Vf~~~pl~~~~-~~ 305 (542)
+.++|+||||+||+||||++|||+...|+++||++|++|++.+.+.+ +++.+.|||||+||+||+||+++|+.+|+ .+
T Consensus 177 ~g~~fsAHPkvDp~tgel~~fg~s~~~~~l~~~~v~~~G~l~r~~~i-~lpg~~~~HDFa~T~~y~If~~~Pv~~d~~p~ 255 (490)
T COG3670 177 LGGPFSAHPKVDPDTGELFNFGYSFALPYLTYYVVDADGELRRTVDI-PLPGPPMMHDFAITENYLIFFDLPVTFDPVPR 255 (490)
T ss_pred CCCccccCccCCCCCceEEEEEeccCCCeeEEEEECCCCcEEEeeee-ecCCCccceeeeecCceEEEEeCcccccchhH
Confidence 66789999999999999999999998889999999999999998888 99999999999999999999999999996 34
Q ss_pred HHhC--CCCCeeeCCCCCeEEEEEeCCCCCCCceEEeecCCeeEeeecccccCCCCCEEEEEeecCCCccccccc----c
Q 044599 306 MIFG--GGSPVGADPAKVCRIGIIPRYATDESQMRWFEVPGFNIIHAINAWDEEDGNAVVMVAPNILSVEHTLDR----T 379 (542)
Q Consensus 306 ~l~~--g~~~~~~d~~~~tr~~VipR~~~~~~~v~w~e~p~~f~fH~~NA~Ee~dg~~Ivl~~~~~~~~~~~~~~----~ 379 (542)
++-. .+.++.|+|+.++||+||||.+ + ++|||||+++||+||+.||||++|+ .|.++.++..++....+. .
T Consensus 256 ll~~~~~~~~~~~~pe~ptri~V~pR~g-~-~~irwfE~~p~fvfH~~NAye~~d~-~v~~d~~~~~~~~~~~~~~~~~~ 332 (490)
T COG3670 256 LLGRPADGHAMRWRPELPTRILVLPREG-D-SEIRWFEAEPGFVFHFLNAYEEGDE-VVLVDFLRYDDFSQTLDTLGEGP 332 (490)
T ss_pred HhcCcccccceeecCCCCcEEEEEccCC-C-CceeEEecCCeEEEEecceeecCCC-cEEEEEEeecccccccccccccc
Confidence 4412 3578999999999999999986 3 6899999999999999999999874 455666655443221111 1
Q ss_pred -----ccccceEEEEEEeCCCCcEEEEEccCCCCcCcccCccCCCCCCcEEEEeeCCC-CCCccc---EEEeeccCCCcc
Q 044599 380 -----DLVHALVEKVRIDLRTGIVTRRPMSARNLDFGVINPAYMAKKSRYVYAAVGDP-MPKISG---VVKLDVSKGDER 450 (542)
Q Consensus 380 -----~~~~~~L~r~ridl~tg~v~~~~L~~~~~EfP~In~~~~Gr~~Ry~Y~~~~~~-~~~~~g---i~K~Dl~tg~~~ 450 (542)
....++|+||+|||+||++..+.+.++++|||+||++++|++|||+|++...+ +..+++ |+|+|++||+
T Consensus 333 ~g~~~~~a~~~L~R~~lnl~tg~v~~~~~~~r~~EFP~in~~~~G~p~RY~Y~~~~rp~~~l~~g~~~l~k~D~~tg~-- 410 (490)
T COG3670 333 GGDFRTLAPPRLHRWTLNLKTGKVAEEQLDDRACEFPRINPRYVGQPYRYTYMSGARPGTFLFQGLQTLAKHDLETGT-- 410 (490)
T ss_pred cccccccCCCcceEEEEccccchhHHHhhhhhhcccCccChhhcCCceEEEEEecccCCccchhhcceeEEEeccCCc--
Confidence 11268999999999999999999999999999999999999999999987665 344556 9999999994
Q ss_pred cceeEEEEEcCCCccCCCcEEeecCCCCCCCCCCCcEEEEEEEcCCCCeeEEEEEeCCCCCCCeeEEEEcCCcCCCCccc
Q 044599 451 RDCIVATRIFGPGCYGGEPFFVARDPENPETEEDDGYVVSYVHDENTGESKFLVMDAKSPRLDIVAAVKLPRRVPYGFHG 530 (542)
Q Consensus 451 ~~~~~~~~~~~~g~~~gEPiFVPr~~~~~~~~EDDG~Lls~V~d~~~~~S~l~IlDA~~~~~~pVArv~LP~rvP~GFHG 530 (542)
.+.+.|++++|++||+||||+ ++ .+|||||||++|+|.+.+.|+|+|+||++++.+||||+.||++|||||||
T Consensus 411 ----~~~~~~g~~~y~~E~vfvPrp-g~--~~EdDGwLl~~vyd~~~~~Sel~v~DA~~~~~epIa~l~Lp~~vP~gfHG 483 (490)
T COG3670 411 ----SQVYSFGPRGYGSEPVFVPRP-GS--SAEDDGWLLTLVYDGDRHASELLVFDAQRVTAEPIARLALPQRVPYGFHG 483 (490)
T ss_pred ----EEEEecCCCCcccccccccCC-CC--CcCCCcEEEEEEEecCCCcceEEEEecccCCCCcceEEeccccccccccc
Confidence 789999999999999999998 55 79999999999999999999999999999999999999999999999999
Q ss_pred cccccc
Q 044599 531 LFVRQA 536 (542)
Q Consensus 531 ~fv~~~ 536 (542)
+|++.+
T Consensus 484 ~w~~~~ 489 (490)
T COG3670 484 NWVPTE 489 (490)
T ss_pred cccccc
Confidence 999875
No 4
>PF03055 RPE65: Retinal pigment epithelial membrane protein; InterPro: IPR004294 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection. They are also essential dietary nutrients in animals. Carotenoid oxygenases cleave a variety of carotenoids into a range of biologically important products, including apocarotenoids in plants that function as hormones, pigments, flavours, floral scents and defence compounds, and retinoids in animals that function as vitamins, visual pigments and signalling molecules []. Examples of carotenoid oxygenases include: Beta-carotene-15,15'-monooxygenase (BCDO1; 1.14.99.36 from EC) from animals, which cleaves beta-carotene symmetrically at the central double bond to yield two molecules of retinal []. Beta-carotene-9',10'-dioxygenase (BCDO2) from animals, which cleaves beta-carotene asymmetrically to apo-10'-beta-carotenal and beta-ionone, the latter being converted to retinoic acid. Lycopene is also oxidatively cleaved []. 9-cis-epoxycarotenoid dioxygenase from plants, which cleaves 9-cis xanthophylls to xanthoxin, a precursor of the hormone abscisic acid []. Apocarotenoid-15,15'-oxygenase from bacteria and cyanobacteria, which converts beta-apocarotenals rather than beta-carotene into retinal. This protein has a seven-bladed beta-propeller structure with four hisitidines that hold the iron active centre []. Retinal pigment RPE65 from animals, which in its soluble form binds all-trans retinol, and in its membrane-bound form binds all-trans retinyl esters. RPE65 is important for the production of 11-cis retinal during visual pigment regeneration []. ; PDB: 3NPE_A 2BIX_B 2BIW_A 3KVC_B 3FSN_B.
Probab=100.00 E-value=1.7e-105 Score=874.06 Aligned_cols=433 Identities=42% Similarity=0.730 Sum_probs=330.7
Q ss_pred cCCCccc-ccCCCCccceeeccCCCCCcceEEeecCCCCC-C-CCCCccCcCCCcceEEEEeecCceeEEEEeecchhhH
Q 044599 89 SDNFAPV-DELPPTECEVVQGSLPSCLDGAYIRNGPNPQY-L-PRGPYHLFDGDGMLHSIKISRGRATLCSRYVRTYKYT 165 (542)
Q Consensus 89 ~gnfapv-~E~~~~~~~~V~G~IP~~L~Gt~~RNGP~p~~-~-~~~~~HwFDGdGmlh~~~f~~G~v~y~sRyV~T~~~~ 165 (542)
+|+|+|+ +|......+.|+|+||+||+|+|||||||+++ . +...+||||||||||+|+|++|+|+|+||||+|++|+
T Consensus 1 ~g~f~~~~~E~~~~~~~~v~G~iP~~L~G~~~RnGP~~~~~~~~~~~~H~FDGdGmv~~~~f~~g~v~y~~R~v~T~~~~ 80 (486)
T PF03055_consen 1 SGGFAPVTEEVPDPEDLEVEGEIPSWLDGTLYRNGPGPFEVIGGRRYNHWFDGDGMVHAFRFDDGRVTYRNRFVRTEGYK 80 (486)
T ss_dssp SGCGS---SEE-EEEC-EEEE---TT-EEEEEEEEBEESE-ETTEE-SCGGGSEBEEEEEEEETTEEEEEEEE---HHHH
T ss_pred CCCCCCCccccCCccccEEeeeCCCcCCCeeEEEcCcccccCCCcccccccCCCCEEEEEEECCCCceeEEEEeCcHHHH
Confidence 5899999 67745556789999999999999999999998 4 3456899999999999999999999999999999999
Q ss_pred HhhhcCCCCCcccccCCC-----------------CCCcCccchhh--hHhHHhc----cCCEEeecCCCCCcceeeccc
Q 044599 166 IENEAGSPILPNVFSGFN-----------------GLTASAARGAL--SAARLLA----DLPYAIRLTPNGDIETIGRHD 222 (542)
Q Consensus 166 ~E~~~g~~~f~~~~s~~~-----------------~~~~~~an~~~--~~~rlla----~~Py~i~i~p~~tLeT~G~~d 222 (542)
+|+++|+.+|++.++... ...++.+|+++ +.+|+|| |.||+||++ ||||+|.+|
T Consensus 81 ~e~~~g~~~~~g~~gt~~~~~~~~~~~~~~~~~~~~~~~~~aNt~v~~~~g~llAl~E~g~p~~lDp~---TLeT~g~~~ 157 (486)
T PF03055_consen 81 AEREAGRRLYRGEFGTVPLPDPCRNIFRFPMPFFRGKPKNNANTNVIPHGGRLLALWEGGPPYELDPD---TLETLGPFD 157 (486)
T ss_dssp HHHHHTSS-SC-TTTCTTCSTHHHHTCHHTTS--GGGB-----SEEEEETTEEEEE-TTSEEEEEETT---TCEEEEEEE
T ss_pred HHHhcCCceecccccccccCchhhhhhhhccccccccCCCCceeeeEEECCEEEEEEcCCCCEEechh---HhhhcCccc
Confidence 999999999987665321 11256777775 6789987 889998853 999999999
Q ss_pred CCCccc-ccccCCCccCCCCCcEEEEEEcCC---CCcEEEEEEcCCCCccceeecccCCCCceeeeeecCCcEEEEEecc
Q 044599 223 FDGKLA-MSMTAHPKLDSDTGEAFAFRYGPV---PPFLTYFRFDANGKKQPNVPIFSMTRPSFLHDFAITKKYAVFVDIQ 298 (542)
Q Consensus 223 ~~g~l~-~~ftAHPk~Dp~tGel~~f~~~~~---~p~~~~~~~~~~G~~~~~v~i~~~~~p~~iHDfaiTeny~Vf~~~p 298 (542)
|+|+|. ..||||||+||+|||+|+|+++.. .|.+++|++|++|+++..+++++++.++|||||+|||||+||+++|
T Consensus 158 ~~~~l~~~~~tAHp~~Dp~tg~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iHdf~vT~~Y~V~~~~P 237 (486)
T PF03055_consen 158 FDGKLPGQPFTAHPKIDPETGELYNFGYSLGPEGSPKLTVYEIDPDGKKIHRVPSFPLPRPSYIHDFAVTENYVVFPDNP 237 (486)
T ss_dssp GGGTSSTS---S--EEETTTTTEEEEEEECSSTTSEEEEEEEE-TTSEEEEEEEESCCCS-B-----EE-SSEEEEEE-S
T ss_pred ccccccCcccccCceEcccCCcEEEEEEEeccCCCCcEEEEEEcCccceeEEeeeccCCCCcccccccccCceEEEEECC
Confidence 999999 689999999999999999999864 4899999999999877777877899999999999999999999999
Q ss_pred cccChHHHHhCCC---CCeeeCCCCCeEEEEEeCCCCCCCceEEeecCCeeEeeecccccCCCC-CEEEEEeecCCCccc
Q 044599 299 IGMNPMEMIFGGG---SPVGADPAKVCRIGIIPRYATDESQMRWFEVPGFNIIHAINAWDEEDG-NAVVMVAPNILSVEH 374 (542)
Q Consensus 299 l~~~~~~~l~~g~---~~~~~d~~~~tr~~VipR~~~~~~~v~w~e~p~~f~fH~~NA~Ee~dg-~~Ivl~~~~~~~~~~ 374 (542)
+.+++.+++ .|. .++.|++++++||+||||++++ +.++||++++||+||++||||+++| .+||++.|+..+.+.
T Consensus 238 ~~~~~~~~~-~g~~~~~~~~~~p~~~t~~~VipR~~~~-~~v~~~~~~~~~~~H~~NAyE~~dg~~~iv~d~~~~~~~~~ 315 (486)
T PF03055_consen 238 LRFDPERLL-LGGSPIDCLKWDPERPTRFHVIPRDGGK-SPVRWFEAPPFFVFHFVNAYEDDDGGGEIVLDACRYDDPEF 315 (486)
T ss_dssp EEE-HHHHH-TTCCTGGCEEE-TTS-EEEEEEETTTSC-CCEEEEEETTCEEEEEEEEEEETTT-TEEEEEEEEECSSS-
T ss_pred eEECHHHHh-hCCcccceEEECCCCCeEEEEEECcCCC-ceeEEEecCChhhccccceeecCCCceEEEEEEeecCCccc
Confidence 999999999 555 7899999999999999998764 6799999999999999999999763 589998876543321
Q ss_pred c--------cc----ccccccceEEEEEEeCC--CCcEEEEEccCC-CCcCcccCccCCCCCCcEEEEeeCCC----CCC
Q 044599 375 T--------LD----RTDLVHALVEKVRIDLR--TGIVTRRPMSAR-NLDFGVINPAYMAKKSRYVYAAVGDP----MPK 435 (542)
Q Consensus 375 ~--------~~----~~~~~~~~L~r~ridl~--tg~v~~~~L~~~-~~EfP~In~~~~Gr~~Ry~Y~~~~~~----~~~ 435 (542)
+ .. ......++|+||+||++ +|+++++.|++. ++|||+||++|.||+|||+|++..+. ...
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~l~R~~idl~~~~~~~~~~~l~~~~~~EfP~in~~~~g~~~ry~Y~~~~~~~~~~~~~ 395 (486)
T PF03055_consen 316 LDSFYLDNLRPDGMDFNSDSPGRLRRYRIDLDSKTGRVSEEPLDDGNPCEFPRINPRYSGRPYRYVYAVGMDPERSPGFP 395 (486)
T ss_dssp CGCSCHHHHCC-HHHCCCS-EEEEEEEEEETT--TCEEEEEEEETTEEEEEEEE-GGGTTS--SEEEEEEECSCTS---E
T ss_pred ccccchhcccccccccccCCCceEEEEEEccccccceeEHhHhccCCCcccceeCcccCCCcccEEEEEeecccCCcCcC
Confidence 1 11 11346789999999999 999988899987 69999999999999999999865432 346
Q ss_pred cccEEEeeccCCCcccceeEEEEEcCCCccCCCcEEeecCCCCCCCCCCCcEEEEEEEcCCCCeeEEEEEeCCCCCCCee
Q 044599 436 ISGVVKLDVSKGDERRDCIVATRIFGPGCYGGEPFFVARDPENPETEEDDGYVVSYVHDENTGESKFLVMDAKSPRLDIV 515 (542)
Q Consensus 436 ~~gi~K~Dl~tg~~~~~~~~~~~~~~~g~~~gEPiFVPr~~~~~~~~EDDG~Lls~V~d~~~~~S~l~IlDA~~~~~~pV 515 (542)
+++|+|+|+++++ ...|.+++++|++||+||||+ ++ .+|||||||++|+|.++++|+|+||||++|+.+||
T Consensus 396 ~~~l~k~D~~tg~------~~~~~~~~~~~~~EpvFVPr~-~~--~~EdDG~Ll~~v~~~~~~~s~l~VlDA~~l~~GPv 466 (486)
T PF03055_consen 396 FNGLVKVDLETGE------VQRWSFGPGCFPGEPVFVPRP-GG--AEEDDGYLLSVVYDSDTNRSELLVLDAKDLEEGPV 466 (486)
T ss_dssp EEEEEEEETTTTE------EEEEE-TTTEEE--EEEEE-T-TS---STT-EEEEEEEEETTTTCEEEEEEETTTTCE--E
T ss_pred CCEEEEEeccccc------ceEEECCCCceecceEeccCC-CC--CCCCceEEEEEEEECCCCccEEEEEeCCCCCcCce
Confidence 8999999999993 789999999999999999997 55 79999999999999999999999999999999999
Q ss_pred EEEEcCCcCCCCcccccccc
Q 044599 516 AAVKLPRRVPYGFHGLFVRQ 535 (542)
Q Consensus 516 Arv~LP~rvP~GFHG~fv~~ 535 (542)
||++||++||+||||+|+++
T Consensus 467 Ar~~lP~~vP~gfHG~w~~~ 486 (486)
T PF03055_consen 467 ARVELPHRVPYGFHGSWVPE 486 (486)
T ss_dssp EEEEESS---S-SEEEEEE-
T ss_pred EEEECCCCCCCCccccccCC
Confidence 99999999999999999974
No 5
>PLN02969 9-cis-epoxycarotenoid dioxygenase
Probab=100.00 E-value=1.6e-100 Score=849.59 Aligned_cols=436 Identities=29% Similarity=0.494 Sum_probs=360.3
Q ss_pred ccCCCccc-ccC-CCCccceeeccCCCCC-cceEEeecCCCCCCCCC-CccCcCCCcceEEEEeecC--ceeEEEEeecc
Q 044599 88 LSDNFAPV-DEL-PPTECEVVQGSLPSCL-DGAYIRNGPNPQYLPRG-PYHLFDGDGMLHSIKISRG--RATLCSRYVRT 161 (542)
Q Consensus 88 l~gnfapv-~E~-~~~~~~~V~G~IP~~L-~Gt~~RNGP~p~~~~~~-~~HwFDGdGmlh~~~f~~G--~v~y~sRyV~T 161 (542)
++++|+|+ +|. .+..+.+|+|+||+|| +|||||||||+++.+.+ .+||||||||||+|+|++| +|+|+||||||
T Consensus 60 ~~~~f~~~~~E~~~~~~l~~V~G~IP~~L~~GtlyRnGPg~~~~~~~~~~HwFDGdGmlh~f~f~~G~~~v~y~nRfVrT 139 (610)
T PLN02969 60 YQFLFVSQRSETKDPVRLRVVEGAIPSDFPSGTYYLAGPGLFTDDHGSTVHPLDGHGYLRAFHIDGGDRPVQYSARYVKT 139 (610)
T ss_pred hhhhhcCChhhcCCccccceEEecCCchhcCCEEEEecCCcccCCCCCccccCCCCceEEEEEEcCCCeEEEEEeeeecc
Confidence 37999999 676 3566557999999999 99999999999887653 5899999999999999998 59999999999
Q ss_pred hhhHHhhhcCCCCC----cccccCCCC--------CCcCccchhh--hHhHHhc----cCCEEeecCCCCCcceeecccC
Q 044599 162 YKYTIENEAGSPIL----PNVFSGFNG--------LTASAARGAL--SAARLLA----DLPYAIRLTPNGDIETIGRHDF 223 (542)
Q Consensus 162 ~~~~~E~~~g~~~f----~~~~s~~~~--------~~~~~an~~~--~~~rlla----~~Py~i~i~p~~tLeT~G~~d~ 223 (542)
++|++|+++|+.++ ++.++.+.+ ..++.||+++ +.+|+|| +.||+||+ + ||||+|++||
T Consensus 140 ~~~~~E~~ag~~~~~~~~~~pfs~~~~~~~~~~~~~~kn~ANT~V~~~gg~LlAl~E~g~P~~lDP--~-TLeT~G~~d~ 216 (610)
T PLN02969 140 EAKKEEHDPETRTWRFTYRGPFSVLKGGKRVGNVKVMKNVANTSVLKWGGRLLCLWEGGEPYEIDS--G-TLETIGRFDL 216 (610)
T ss_pred HHHHHHHHhCCcceeeeeccchhcccCCCCcccccccccCCCcceeeeCCEEEEecCCCCCeEcCc--C-ccceeecccc
Confidence 99999999987754 343443321 1257888875 6789987 89999874 3 9999999999
Q ss_pred -----------------------------CCccc---ccccCCCccCCCCCcEEEEEEcC----C-CCcEEEEEEcCCCC
Q 044599 224 -----------------------------DGKLA---MSMTAHPKLDSDTGEAFAFRYGP----V-PPFLTYFRFDANGK 266 (542)
Q Consensus 224 -----------------------------~g~l~---~~ftAHPk~Dp~tGel~~f~~~~----~-~p~~~~~~~~~~G~ 266 (542)
.|++. ..||||||+||.||||++|+|+. . +|.++||++|++|+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~p~~~ftAHpK~DP~tg~lv~f~~~~~~~~~~~~~~~~y~~d~~G~ 296 (610)
T PLN02969 217 APDDDSSKDDRLQGSDAWDLAARLLKPILTGVFKMPKKRLLSHYKIDGRRNRLLVVTCNAEDMLLPRSNFTFYEFDADFK 296 (610)
T ss_pred cccccccccccccccccccccccccccccccccccCCccccccCCcCCCCCCEEEEEeccccccCCCceeEEEEECCCCC
Confidence 44443 36899999999999999999976 2 48999999999999
Q ss_pred ccceeecccCCCCceeeeeecCCcEEEEEecccccChHHHHh--CCC----CCeeeCCCCCe-EEEEEeCCCCCC-CceE
Q 044599 267 KQPNVPIFSMTRPSFLHDFAITKKYAVFVDIQIGMNPMEMIF--GGG----SPVGADPAKVC-RIGIIPRYATDE-SQMR 338 (542)
Q Consensus 267 ~~~~v~i~~~~~p~~iHDfaiTeny~Vf~~~pl~~~~~~~l~--~g~----~~~~~d~~~~t-r~~VipR~~~~~-~~v~ 338 (542)
+.+..++ +++.++|||||+|||||+||+++|+++|+.+++. .|. +++.|||++++ ||+||||++++. ..++
T Consensus 297 ~~~~~~~-~~p~~~~iHDfaiTeny~Vf~~~P~~~d~~~~l~~~~G~~~~~~~l~wdp~~~t~~~~VipR~~~~~~~~~~ 375 (610)
T PLN02969 297 LVQRKEF-KLDDHLMIHDWAFTDTHYVLLANRVKLDVPGSLLAMAGLSPMISALAVDPSRPSSPVYLLPRFPEKEAGGRD 375 (610)
T ss_pred Eecceee-cCCCcceeeeeeccCCEEEEEECceecCHHHHHHHhhcCCCchheeEECCCCCccEEEEEECcCCCccccee
Confidence 9888887 8999999999999999999999999999987552 333 45899999995 899999997543 5789
Q ss_pred E---eecC-CeeEeeecccccCCC--CC-EEEEEeecC-C-Cccc--c---------cc-c------cccccceEEEEEE
Q 044599 339 W---FEVP-GFNIIHAINAWDEED--GN-AVVMVAPNI-L-SVEH--T---------LD-R------TDLVHALVEKVRI 391 (542)
Q Consensus 339 w---~e~p-~~f~fH~~NA~Ee~d--g~-~Ivl~~~~~-~-~~~~--~---------~~-~------~~~~~~~L~r~ri 391 (542)
| |++| +||+||++|||||++ |+ +||+++|.. + .... . +. . .....++|+||+|
T Consensus 376 W~v~~e~~~~~f~fH~~NAfEe~~~~g~~~Ivvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~i 455 (610)
T PLN02969 376 WRVPVEVPSQLWLIHVGNAYEERDDRGNLRIQLHASACSYQWFSFHRMFGYDWQNKKLDPSVMNNAKGKELLPHLVQVSI 455 (610)
T ss_pred eeeEEeeCCCeEEEeccceeecCCCCCceEEEEEEeccccccccccccccccccccccCcchhcccCcccccceEEEEEE
Confidence 9 9998 599999999999742 32 588876521 1 1110 0 00 0 0123578999999
Q ss_pred eCC-CCcE---EEEEcc---CCCCcCcccCccCCCCCCcEEEEeeCCC------CCCcccEEEeeccCCCcccceeEEEE
Q 044599 392 DLR-TGIV---TRRPMS---ARNLDFGVINPAYMAKKSRYVYAAVGDP------MPKISGVVKLDVSKGDERRDCIVATR 458 (542)
Q Consensus 392 dl~-tg~v---~~~~L~---~~~~EfP~In~~~~Gr~~Ry~Y~~~~~~------~~~~~gi~K~Dl~tg~~~~~~~~~~~ 458 (542)
|+. +|++ +.+.|. +.++|||+||++|.||+|||+|+++.++ ...+++|+|+|+++|+ .+.|
T Consensus 456 dl~~~g~~~~~~~~~l~~~~~~~~EFP~In~~~~Gr~~ry~Y~~~~~~~~~~~~~~~~~~l~K~D~~tg~------~~~w 529 (610)
T PLN02969 456 DLDRTGDCRSCDVEPLSNQWEKPADFPVINPSFSGQKNEYTYAAAASGSRKTLPHFPFDSVVKLDVPDGS------ARSW 529 (610)
T ss_pred eCCcCCccccccceeeccccccccccCccChhHCCCcceEEEEeeecCCCcccccCCcCeEEEEECCCCC------EEEE
Confidence 996 6765 346775 6799999999999999999999976542 2358999999999994 7889
Q ss_pred EcCCCccCCCcEEeecC--CCCCCCCCCCcEEEEEEEcCCCCeeEEEEEeCCCCCCC--eeEEEEcCCcC--CCCccccc
Q 044599 459 IFGPGCYGGEPFFVARD--PENPETEEDDGYVVSYVHDENTGESKFLVMDAKSPRLD--IVAAVKLPRRV--PYGFHGLF 532 (542)
Q Consensus 459 ~~~~g~~~gEPiFVPr~--~~~~~~~EDDG~Lls~V~d~~~~~S~l~IlDA~~~~~~--pVArv~LP~rv--P~GFHG~f 532 (542)
++|+++|+|||+||||+ |++ .+|||||||++|+|.++++|+|+||||++|+.+ ||||++||++| |+||||+|
T Consensus 530 ~~g~~~~~~EPvFVPr~~~p~~--~~EDDG~Ll~~v~d~~~~~S~LvILDAk~~~eg~~PVAri~LP~~v~~P~GfHG~w 607 (610)
T PLN02969 530 STGARRFVGEPVFVPRKSSQGG--GEEDDGYVLVVEYAVSDERCYLVILDAKRIGERDAVVAKLEVPKHLTFPMGFHGFW 607 (610)
T ss_pred EeCCCCcccCCEEecCCCCCCC--CccCCcEEEEEEEECCCCceEEEEEeCCCCcccCceeEEEECCcccCCCccccccc
Confidence 99999999999999995 244 789999999999999999999999999999775 99999999998 99999999
Q ss_pred ccc
Q 044599 533 VRQ 535 (542)
Q Consensus 533 v~~ 535 (542)
+++
T Consensus 608 ~~~ 610 (610)
T PLN02969 608 ADE 610 (610)
T ss_pred cCC
Confidence 864
No 6
>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.3e-77 Score=651.61 Aligned_cols=474 Identities=38% Similarity=0.609 Sum_probs=422.9
Q ss_pred CCCCChhHHHHHHHHHHHhhhc-CCCCCCCCCCcccccCCCcccccCCCCccceeeccCCCCCcceEEeecCCCCCCCCC
Q 044599 53 RAEPTIPTIILNACDDIINNFI-DPPLKYSVDPRHVLSDNFAPVDELPPTECEVVQGSLPSCLDGAYIRNGPNPQYLPRG 131 (542)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~p~~~l~gnfapv~E~~~~~~~~V~G~IP~~L~Gt~~RNGP~p~~~~~~ 131 (542)
.+.+..+..++|...-...+|. ..|++++.+|.+++++||+|+.|.++..+..++|.+|.+++|.++|||+|+.|.|.+
T Consensus 72 ~~~~~~~~~~~dg~~~~~~~~~~s~~y~~~~~p~r~v~~~f~~~~~~pd~~~~~~s~~~~~~~~g~~~rd~aN~~f~pv~ 151 (582)
T KOG1285|consen 72 GPALLHAFHFLDGRVYYSSRYLESDPYKKTVDPNRIVSGEFAPVAEFPDPCKNIFSGFFPEFRNGESIRDNANPNFTPVG 151 (582)
T ss_pred chhhhhheeecCCeEEEEeeecccCCcccccccceeeeccccccCCCCCccCcceeeeeeecccccccccCCCcceeecC
Confidence 3445566666666644555666 478999999999999999999999988888999999999999999999999999999
Q ss_pred CccCcCCCcceEEEEeecC--ceeEEEEeecchhhHHhhhcCCCCCcccccCCCCCCcCccchhh---------------
Q 044599 132 PYHLFDGDGMLHSIKISRG--RATLCSRYVRTYKYTIENEAGSPILPNVFSGFNGLTASAARGAL--------------- 194 (542)
Q Consensus 132 ~~HwFDGdGmlh~~~f~~G--~v~y~sRyV~T~~~~~E~~~g~~~f~~~~s~~~~~~~~~an~~~--------------- 194 (542)
++||||||||+|+++|+.| +++|++||.+| |.+|+..|+..++...+.++++ .+.++...
T Consensus 152 g~~~~~gtet~~~~ki~~~tl~t~~~~~~~k~--~v~~~~~gah~~~d~~G~~~g~-~g~~~~~~~~~r~~~~~~~p~~~ 228 (582)
T KOG1285|consen 152 GHHLYAGTETPHAVKIDPGTLETTYKVRFTKT--LVQEHTAGAHPHPDEIGTVYGH-FGIARFGLFFARALTVLKNPANG 228 (582)
T ss_pred CCeeEecCCCceeEEecCcccceeEeeccccc--eeeeeecccCCcccCcccEEee-echhhccccccceeEEEecCCCc
Confidence 9999999999999999999 89999999999 9999999998888777776663 22222111
Q ss_pred ----------hHhHHhc----cCCEEeecCCCCCcce-eecccCCCcccccccCCCccCCCCCcEEEEEEcCC-CCcEEE
Q 044599 195 ----------SAARLLA----DLPYAIRLTPNGDIET-IGRHDFDGKLAMSMTAHPKLDSDTGEAFAFRYGPV-PPFLTY 258 (542)
Q Consensus 195 ----------~~~rlla----~~Py~i~i~p~~tLeT-~G~~d~~g~l~~~ftAHPk~Dp~tGel~~f~~~~~-~p~~~~ 258 (542)
+..++++ |+||...+...|++|| ||+++|++++...+.||||+||.||++++++|+.. +|++.|
T Consensus 229 ~~~~~~~~v~~~~~~~a~~~dd~~~p~yvhs~G~tenyi~~~e~~~~l~~~~~a~pk~~~~~g~~~~~~yd~~~~~~l~~ 308 (582)
T KOG1285|consen 229 VGLANAGLVWFHNRLLAYSEDDLPYPGYVHSFGDTENYIGRFEFPLRLNLSKFAHPKLDPVTGEWFADFYDWVPKPYLIY 308 (582)
T ss_pred cccccccceEeecceeeeccCCCccceEEeecCCccceEeEecCCcccchhhhccCcccccccchhhhhhcccCCCcEEE
Confidence 1234555 8999999988899999 99999999999999999999999999999999997 499999
Q ss_pred EEEcCCCCccceeecccCCCCceeeeeecCCcEEEEEecccccChHHHHhCCCCCeeeCCCCCeEEEEEeCCCCCCCceE
Q 044599 259 FRFDANGKKQPNVPIFSMTRPSFLHDFAITKKYAVFVDIQIGMNPMEMIFGGGSPVGADPAKVCRIGIIPRYATDESQMR 338 (542)
Q Consensus 259 ~~~~~~G~~~~~v~i~~~~~p~~iHDfaiTeny~Vf~~~pl~~~~~~~l~~g~~~~~~d~~~~tr~~VipR~~~~~~~v~ 338 (542)
++++.+|+++.++++ ....++|+||||+|||+.|++|+++.++...|. .+++++.++..+..|+++.+++..+.+.++
T Consensus 309 ~~~~~~~~k~~~~~~-~~~~~t~hh~na~eedg~vi~D~~~~~~~~~~~-~~~~p~~~~~~k~~rfg~~~k~~~d~~~~~ 386 (582)
T KOG1285|consen 309 HKFSKEGGKSVPVEI-FPSFPTFHHDNAFEEDGCVVPDLCVYFDLSEMI-RDTSPLLYDNGKTLRFGLLSKTAPDARRIV 386 (582)
T ss_pred EEeccccCccCccee-ccCcceEEEeeeecccCceEEEEEEEechhhhh-cccceeecccccccccccccccCCcccceE
Confidence 999999999888888 455899999999999999999999999999888 566689999999999999999999999999
Q ss_pred EeecCCeeEeeecccccCCCCC-EEEEEeecCCCcccccccc-ccccceEEEEEEeCCCCcEEEEEccC-CCCcCcccCc
Q 044599 339 WFEVPGFNIIHAINAWDEEDGN-AVVMVAPNILSVEHTLDRT-DLVHALVEKVRIDLRTGIVTRRPMSA-RNLDFGVINP 415 (542)
Q Consensus 339 w~e~p~~f~fH~~NA~Ee~dg~-~Ivl~~~~~~~~~~~~~~~-~~~~~~L~r~ridl~tg~v~~~~L~~-~~~EfP~In~ 415 (542)
|.+.+.+|+||++|+||+...+ +++|...|+.+.+.++.+. +....+|.+.|+++++|...++.+.. .++||++||.
T Consensus 387 ~p~~~~~~~~~~~~~~e~~~~~~~~~v~~~~~s~~~~i~~~~de~~~~~l~e~r~~~~tg~~~~~~~~~~~nl~~~~in~ 466 (582)
T KOG1285|consen 387 WPLSPSKFAFHLWNNWEKKPYDWEVVVIGSCMSSTSTIFRESDELLGNRLEEIRLNLKTGLEFPRPVIPKINLDFGMINR 466 (582)
T ss_pred EEeccccccccchhhhcccCCCceEEeecccCCccchhhcccccchhceeeeeeecccccccccceeecccccccccccc
Confidence 9999999999999999975544 6777888888888776643 66779999999999999988877664 5999999999
Q ss_pred cCCCCCCcEEEEeeCCCCCCcccEEEeeccCCCcccceeEEEEEcCCCccCCCcEEeecCCCCCCCCCCCcEEEEEEEcC
Q 044599 416 AYMAKKSRYVYAAVGDPMPKISGVVKLDVSKGDERRDCIVATRIFGPGCYGGEPFFVARDPENPETEEDDGYVVSYVHDE 495 (542)
Q Consensus 416 ~~~Gr~~Ry~Y~~~~~~~~~~~gi~K~Dl~tg~~~~~~~~~~~~~~~g~~~gEPiFVPr~~~~~~~~EDDG~Lls~V~d~ 495 (542)
.|.||+|||+|+++.++|+++++++|+|+.+| + +..|.+|.++++|||+|||++ ++ .+|||||||++|||+
T Consensus 467 ~~~Gkk~ryvY~ai~~~~p~~~g~vKvDl~~g-~-----~~~w~~~~~~~~GEP~FVP~p-~~--~eEDdG~Iv~~v~~~ 537 (582)
T KOG1285|consen 467 SYLGKKYRYVYGAILDPWPKVSGIVKVDLVTG-E-----VKKWREGGGRPGGEPIFVPRP-GT--LEEDDGYIVSVVHDE 537 (582)
T ss_pred eeecccceEEEEEecCCccCCCeEEEEEecCC-c-----eeeEecCCCccCCCceEecCC-CC--cccCCcEEEEEEEcC
Confidence 99999999999999999999999999999999 4 889999999999999999997 55 799999999999999
Q ss_pred CCCeeEEEEEeCCCCCCCeeEEEEcCCcCCCCccccccccchhhccC
Q 044599 496 NTGESKFLVMDAKSPRLDIVAAVKLPRRVPYGFHGLFVRQADLDKLL 542 (542)
Q Consensus 496 ~~~~S~l~IlDA~~~~~~pVArv~LP~rvP~GFHG~fv~~~~l~~~~ 542 (542)
.+.+|+|+||||++ ++++||++||.||||||||+|++..+|++|.
T Consensus 538 ~~~~s~l~ildAK~--l~~~ar~~vp~rvP~gfHG~f~~~~~~~~~~ 582 (582)
T KOG1285|consen 538 SKEKSFLLILDAKT--LEEVARVEVPTRVPYGFHGTFVSTTDLATQS 582 (582)
T ss_pred CCCcccEEEEeccc--cceeeEEecCCCCCCccceeEeccccccccC
Confidence 99999999999999 9999999999999999999999999999984
No 7
>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.96 E-value=1.5e-27 Score=260.46 Aligned_cols=331 Identities=23% Similarity=0.349 Sum_probs=223.4
Q ss_pred ceeeccCCCCCcceEEeecCCCCCCCC-CCccCcCCCcceEEEEeecCceeEEEEeecchhhHHhhhcCCCCCcc-----
Q 044599 104 EVVQGSLPSCLDGAYIRNGPNPQYLPR-GPYHLFDGDGMLHSIKISRGRATLCSRYVRTYKYTIENEAGSPILPN----- 177 (542)
Q Consensus 104 ~~V~G~IP~~L~Gt~~RNGP~p~~~~~-~~~HwFDGdGmlh~~~f~~G~v~y~sRyV~T~~~~~E~~~g~~~f~~----- 177 (542)
..+.|.||.||+|+++||||+.+..+. ..+|||||-+++|++.|.||++.|++||++|+.|+....+.+.+..+
T Consensus 37 ~~~~g~ip~wL~g~~lrn~pg~~~~g~~~~~h~fd~~~~~~~~~~~dg~~~~~~~~~~s~~y~~~~~p~r~v~~~f~~~~ 116 (582)
T KOG1285|consen 37 CTVKGSIPKWLDGTLLRNGPGLFTVGEEKYNHLFDGPALLHAFHFLDGRVYYSSRYLESDPYKKTVDPNRIVSGEFAPVA 116 (582)
T ss_pred cccccccCccccccccCCCCcccccCcccccccccchhhhhheeecCCeEEEEeeecccCCcccccccceeeeccccccC
Confidence 357899999999999999999987665 35799999999999999999999999999999999877666654322
Q ss_pred --------cccCCCCC------CcCccchhh--h-HhHHhc--cCCEEeecCCCCCcceeecccCCC-ccc-ccccCCCc
Q 044599 178 --------VFSGFNGL------TASAARGAL--S-AARLLA--DLPYAIRLTPNGDIETIGRHDFDG-KLA-MSMTAHPK 236 (542)
Q Consensus 178 --------~~s~~~~~------~~~~an~~~--~-~~rlla--~~Py~i~i~p~~tLeT~G~~d~~g-~l~-~~ftAHPk 236 (542)
+++++.+. ..+.+|.++ . ..++++ +.|+.++|++ +||+|+..++|.+ .+. ..++|||+
T Consensus 117 ~~pd~~~~~~s~~~~~~~~g~~~rd~aN~~f~pv~g~~~~~gtet~~~~ki~~-~tl~t~~~~~~~k~~v~~~~~gah~~ 195 (582)
T KOG1285|consen 117 EFPDPCKNIFSGFFPEFRNGESIRDNANPNFTPVGGHHLYAGTETPHAVKIDP-GTLETTYKVRFTKTLVQEHTAGAHPH 195 (582)
T ss_pred CCCCccCcceeeeeeecccccccccCCCcceeecCCCeeEecCCCceeEEecC-cccceeEeeccccceeeeeecccCCc
Confidence 11211111 123344433 2 345655 8899999996 5999999999999 444 35899999
Q ss_pred cCCCCCcEEE-EEEcCCC----CcEEEEEEcCCCCccce----------ee--cccCCCCceeeeeecCCcEEEEEeccc
Q 044599 237 LDSDTGEAFA-FRYGPVP----PFLTYFRFDANGKKQPN----------VP--IFSMTRPSFLHDFAITKKYAVFVDIQI 299 (542)
Q Consensus 237 ~Dp~tGel~~-f~~~~~~----p~~~~~~~~~~G~~~~~----------v~--i~~~~~p~~iHDfaiTeny~Vf~~~pl 299 (542)
.|+. |++++ ++..... ..+++.+....|..... .. .-.++.|.|||+||+||||+|++++|+
T Consensus 196 ~d~~-G~~~g~~g~~~~~~~~~r~~~~~~~p~~~~~~~~~~~v~~~~~~~a~~~dd~~~p~yvhs~G~tenyi~~~e~~~ 274 (582)
T KOG1285|consen 196 PDEI-GTVYGHFGIARFGLFFARALTVLKNPANGVGLANAGLVWFHNRLLAYSEDDLPYPGYVHSFGDTENYIGRFEFPL 274 (582)
T ss_pred ccCc-ccEEeeechhhccccccceeEEEecCCCccccccccceEeecceeeeccCCCccceEEeecCCccceEeEecCCc
Confidence 9986 99999 6655322 34445455444433111 11 114678999999999999999999999
Q ss_pred ccChHHHHhC------C---CCCeeeCCCCCeEEEEEeCCCCCCCceEEeecCCeeEeeecccccCCCCCEEEEEeecCC
Q 044599 300 GMNPMEMIFG------G---GSPVGADPAKVCRIGIIPRYATDESQMRWFEVPGFNIIHAINAWDEEDGNAVVMVAPNIL 370 (542)
Q Consensus 300 ~~~~~~~l~~------g---~~~~~~d~~~~tr~~VipR~~~~~~~v~w~e~p~~f~fH~~NA~Ee~dg~~Ivl~~~~~~ 370 (542)
.+++.+++.. | ..++.|.++...+++++.+.++....++- .+++++||++|||||+. .||.|.|+..
T Consensus 275 ~l~~~~~a~pk~~~~~g~~~~~~yd~~~~~~l~~~~~~~~~~k~~~~~~--~~~~~t~hh~na~eedg--~vi~D~~~~~ 350 (582)
T KOG1285|consen 275 RLNLSKFAHPKLDPVTGEWFADFYDWVPKPYLIYHKFSKEGGKSVPVEI--FPSFPTFHHDNAFEEDG--CVVPDLCVYF 350 (582)
T ss_pred ccchhhhccCcccccccchhhhhhcccCCCcEEEEEeccccCccCccee--ccCcceEEEeeeecccC--ceEEEEEEEe
Confidence 9999988632 2 23457788889999999998765444443 34499999999999984 6787777655
Q ss_pred Cccccc-ccc--ccccceEEEEEEeCCCCcEEEE---EccCCCCcCcccCccCCCCCCcEEEEeeCCCCCCcccEEE
Q 044599 371 SVEHTL-DRT--DLVHALVEKVRIDLRTGIVTRR---PMSARNLDFGVINPAYMAKKSRYVYAAVGDPMPKISGVVK 441 (542)
Q Consensus 371 ~~~~~~-~~~--~~~~~~L~r~ridl~tg~v~~~---~L~~~~~EfP~In~~~~Gr~~Ry~Y~~~~~~~~~~~gi~K 441 (542)
....+. ... -....+..|+.++.++-...++ +++...+.|+ ...++.-+.|...|......+...++|.+
T Consensus 351 ~~~~~~~~~~p~~~~~~k~~rfg~~~k~~~d~~~~~~p~~~~~~~~~-~~~~~e~~~~~~~~~v~~~~~s~~~~i~~ 426 (582)
T KOG1285|consen 351 DLSEMIRDTSPLLYDNGKTLRFGLLSKTAPDARRIVWPLSPSKFAFH-LWNNWEKKPYDWEVVVIGSCMSSTSTIFR 426 (582)
T ss_pred chhhhhcccceeecccccccccccccccCCcccceEEEecccccccc-chhhhcccCCCceEEeecccCCccchhhc
Confidence 443221 110 1122334455555544332222 3344556777 44445447777776655433333344444
No 8
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=88.24 E-value=38 Score=35.92 Aligned_cols=259 Identities=16% Similarity=0.152 Sum_probs=125.8
Q ss_pred cCCEEeecCCCCCcceeecccCCCcccccccCCCccCCCCCcEEEEEEcCCCCcEEEEEEcCCCCccceeecccCCCCce
Q 044599 202 DLPYAIRLTPNGDIETIGRHDFDGKLAMSMTAHPKLDSDTGEAFAFRYGPVPPFLTYFRFDANGKKQPNVPIFSMTRPSF 281 (542)
Q Consensus 202 ~~Py~i~i~p~~tLeT~G~~d~~g~l~~~ftAHPk~Dp~tGel~~f~~~~~~p~~~~~~~~~~G~~~~~v~i~~~~~p~~ 281 (542)
+.-|.+|.| +.+-+|.. +..|.+|.-+.|+..+++..+. ||.--..|+...-+.++....-+.
T Consensus 17 ~rv~viD~d---~~k~lGmi------~~g~~~~~~~spdgk~~y~a~T--------~~sR~~rG~RtDvv~~~D~~TL~~ 79 (342)
T PF06433_consen 17 SRVYVIDAD---SGKLLGMI------DTGFLGNVALSPDGKTIYVAET--------FYSRGTRGERTDVVEIWDTQTLSP 79 (342)
T ss_dssp EEEEEEETT---TTEEEEEE------EEESSEEEEE-TTSSEEEEEEE--------EEEETTEEEEEEEEEEEETTTTEE
T ss_pred ceEEEEECC---CCcEEEEe------ecccCCceeECCCCCEEEEEEE--------EEeccccccceeEEEEEecCcCcc
Confidence 344666643 55555554 3556777778888777775432 233333343333333333333333
Q ss_pred eeeeecCCc--EEEEEecccccChHHHHhCCCCCeeeCCCCCeEEEEEeCCCCCCCceEEeecCCeeEeeecccccCCCC
Q 044599 282 LHDFAITKK--YAVFVDIQIGMNPMEMIFGGGSPVGADPAKVCRIGIIPRYATDESQMRWFEVPGFNIIHAINAWDEEDG 359 (542)
Q Consensus 282 iHDfaiTen--y~Vf~~~pl~~~~~~~l~~g~~~~~~d~~~~tr~~VipR~~~~~~~v~w~e~p~~f~fH~~NA~Ee~dg 359 (542)
..|.-|-.+ ..+.+.. +...+...|+-.+.|+-+--+-+.||+-.++ ..++-+++|.|....- +.+.
T Consensus 80 ~~EI~iP~k~R~~~~~~~----~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~--kvv~ei~~PGC~~iyP---~~~~-- 148 (342)
T PF06433_consen 80 TGEIEIPPKPRAQVVPYK----NMFALSADGKFLYVQNFTPATSVTVVDLAAK--KVVGEIDTPGCWLIYP---SGNR-- 148 (342)
T ss_dssp EEEEEETTS-B--BS--G----GGEEE-TTSSEEEEEEESSSEEEEEEETTTT--EEEEEEEGTSEEEEEE---EETT--
T ss_pred cceEecCCcchheecccc----cceEEccCCcEEEEEccCCCCeEEEEECCCC--ceeeeecCCCEEEEEe---cCCC--
Confidence 333333321 1111000 0001111233345666666688999998764 4578899998864322 2221
Q ss_pred CEEEEEeecCCCccccccccccccceEEEEEEeCCCCcEEEE--EccCCCCcCcccCccCCCCCCcEEEEeeCCCCCCcc
Q 044599 360 NAVVMVAPNILSVEHTLDRTDLVHALVEKVRIDLRTGIVTRR--PMSARNLDFGVINPAYMAKKSRYVYAAVGDPMPKIS 437 (542)
Q Consensus 360 ~~Ivl~~~~~~~~~~~~~~~~~~~~~L~r~ridl~tg~v~~~--~L~~~~~EfP~In~~~~Gr~~Ry~Y~~~~~~~~~~~ 437 (542)
..-.. | -.+.|..++||-. |+..++ .+....-|-.-.++.|.+...+|.|.... .
T Consensus 149 -~F~~l--C-------------~DGsl~~v~Ld~~-Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~------G 205 (342)
T PF06433_consen 149 -GFSML--C-------------GDGSLLTVTLDAD-GKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYE------G 205 (342)
T ss_dssp -EEEEE--E-------------TTSCEEEEEETST-SSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTT------S
T ss_pred -ceEEE--e-------------cCCceEEEEECCC-CCEeEeeccccCCCCcccccccceECCCCeEEEEecC------C
Confidence 11111 1 1255667777744 444332 34433345444566777888899886432 2
Q ss_pred cEEEeeccCCCcccceeEEEEEcC------CCccCCCcEEeecCCCCCCCCCCCcEEEEEEEcCCC-----CeeEEEEEe
Q 044599 438 GVVKLDVSKGDERRDCIVATRIFG------PGCYGGEPFFVARDPENPETEEDDGYVVSYVHDENT-----GESKFLVMD 506 (542)
Q Consensus 438 gi~K~Dl~tg~~~~~~~~~~~~~~------~g~~~gEPiFVPr~~~~~~~~EDDG~Lls~V~d~~~-----~~S~l~IlD 506 (542)
-|.-+|+..... .....|+.- +++-+|.=.-+. -....|-|.+++|.... ..+|+|++|
T Consensus 206 ~v~~~dlsg~~~---~~~~~~~~~t~~e~~~~WrPGG~Q~~A-------~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D 275 (342)
T PF06433_consen 206 NVYSADLSGDSA---KFGKPWSLLTDAEKADGWRPGGWQLIA-------YHAASGRLYVLMHQGGEGSHKDPGTEVWVYD 275 (342)
T ss_dssp EEEEEEETTSSE---EEEEEEESS-HHHHHTTEEE-SSS-EE-------EETTTTEEEEEEEE--TT-TTS-EEEEEEEE
T ss_pred EEEEEeccCCcc---cccCcccccCccccccCcCCcceeeee-------eccccCeEEEEecCCCCCCccCCceEEEEEE
Confidence 344566655420 011222210 122211101000 12345667777777543 358999999
Q ss_pred CCCCCCCeeEEEEcCCc
Q 044599 507 AKSPRLDIVAAVKLPRR 523 (542)
Q Consensus 507 A~~~~~~pVArv~LP~r 523 (542)
.++ -+-|+|+.|++.
T Consensus 276 ~~t--~krv~Ri~l~~~ 290 (342)
T PF06433_consen 276 LKT--HKRVARIPLEHP 290 (342)
T ss_dssp TTT--TEEEEEEEEEEE
T ss_pred CCC--CeEEEEEeCCCc
Confidence 999 899999999754
No 9
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=78.84 E-value=94 Score=33.00 Aligned_cols=261 Identities=16% Similarity=0.224 Sum_probs=129.5
Q ss_pred CEEeecCCCCCcceeecccCCCcccccccCCCccCCCCCcEEEEEEcCCCCcEEEEEEcCCCCccceeecccCCCC----
Q 044599 204 PYAIRLTPNGDIETIGRHDFDGKLAMSMTAHPKLDSDTGEAFAFRYGPVPPFLTYFRFDANGKKQPNVPIFSMTRP---- 279 (542)
Q Consensus 204 Py~i~i~p~~tLeT~G~~d~~g~l~~~ftAHPk~Dp~tGel~~f~~~~~~p~~~~~~~~~~G~~~~~v~i~~~~~p---- 279 (542)
.|.+|-+ +|.|+-+++....|.- ..|=-+|++.--+|.-+|.. ..+.++.+.++|.+...+..+.-..+
T Consensus 68 ay~iD~~-~G~Lt~ln~~~~~g~~----p~yvsvd~~g~~vf~AnY~~--g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~ 140 (346)
T COG2706 68 AYRIDPD-DGRLTFLNRQTLPGSP----PCYVSVDEDGRFVFVANYHS--GSVSVYPLQADGSLQPVVQVVKHTGSGPHE 140 (346)
T ss_pred EEEEcCC-CCeEEEeeccccCCCC----CeEEEECCCCCEEEEEEccC--ceEEEEEcccCCccccceeeeecCCCCCCc
Confidence 3555533 3788888877654431 25667787644555667765 56889999999988654443222222
Q ss_pred ----ceeeeeecC--CcEEEEEecccccChHHHHhCCCCCeeeCCCCCeEEEEEeCCCCCCCceEEeecCCeeEeeeccc
Q 044599 280 ----SFLHDFAIT--KKYAVFVDIQIGMNPMEMIFGGGSPVGADPAKVCRIGIIPRYATDESQMRWFEVPGFNIIHAINA 353 (542)
Q Consensus 280 ----~~iHDfaiT--eny~Vf~~~pl~~~~~~~l~~g~~~~~~d~~~~tr~~VipR~~~~~~~v~w~e~p~~f~fH~~NA 353 (542)
+=.|.-.+| .+|++.+|.-. | ++ ..+.++.. .+.+.. ...++-=.-|...+||
T Consensus 141 rQ~~~h~H~a~~tP~~~~l~v~DLG~--D--ri-----~~y~~~dg------~L~~~~--~~~v~~G~GPRHi~FH---- 199 (346)
T COG2706 141 RQESPHVHSANFTPDGRYLVVPDLGT--D--RI-----FLYDLDDG------KLTPAD--PAEVKPGAGPRHIVFH---- 199 (346)
T ss_pred cccCCccceeeeCCCCCEEEEeecCC--c--eE-----EEEEcccC------cccccc--ccccCCCCCcceEEEc----
Confidence 225554555 45666666421 1 10 01122211 111100 0001000123356677
Q ss_pred ccCCCCCEEEEEeecCCCccccccccccccceEEEEEEeCCCCcEEE-EEccCCCCcCcccCcc---CCCCCCcEEEEee
Q 044599 354 WDEEDGNAVVMVAPNILSVEHTLDRTDLVHALVEKVRIDLRTGIVTR-RPMSARNLDFGVINPA---YMAKKSRYVYAAV 429 (542)
Q Consensus 354 ~Ee~dg~~Ivl~~~~~~~~~~~~~~~~~~~~~L~r~ridl~tg~v~~-~~L~~~~~EfP~In~~---~~Gr~~Ry~Y~~~ 429 (542)
++++ +.-+. .++.+++.-|..|...|++.+ +.+...+-+|.--|+. .+-.-.||.|++=
T Consensus 200 ---pn~k-~aY~v-------------~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasN 262 (346)
T COG2706 200 ---PNGK-YAYLV-------------NELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASN 262 (346)
T ss_pred ---CCCc-EEEEE-------------eccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEec
Confidence 3332 22111 134466777778888888775 3455555566665553 2445679999752
Q ss_pred CCCCCCcccEEEeeccCCCcccceeEEEEEcCCCccCCCcEEeecCCCC-CCCCCCCcEEEEEEEcCCCCeeEEEEEeCC
Q 044599 430 GDPMPKISGVVKLDVSKGDERRDCIVATRIFGPGCYGGEPFFVARDPEN-PETEEDDGYVVSYVHDENTGESKFLVMDAK 508 (542)
Q Consensus 430 ~~~~~~~~gi~K~Dl~tg~~~~~~~~~~~~~~~g~~~gEPiFVPr~~~~-~~~~EDDG~Lls~V~d~~~~~S~l~IlDA~ 508 (542)
+.. ..-++.++|-.++. .....++.-+|+++-.=.|-|.. .= -...||..=|..+-.|.++++=.++--|+.
T Consensus 263 -Rg~-dsI~~f~V~~~~g~----L~~~~~~~teg~~PR~F~i~~~g-~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~ 335 (346)
T COG2706 263 -RGH-DSIAVFSVDPDGGK----LELVGITPTEGQFPRDFNINPSG-RFLIAANQKSDNITVFERDKETGRLTLLGRYAV 335 (346)
T ss_pred -CCC-CeEEEEEEcCCCCE----EEEEEEeccCCcCCccceeCCCC-CEEEEEccCCCcEEEEEEcCCCceEEecccccC
Confidence 111 12346677777763 11334555566654332232211 00 001233334666666666655444444444
Q ss_pred CCCCCeeEEE
Q 044599 509 SPRLDIVAAV 518 (542)
Q Consensus 509 ~~~~~pVArv 518 (542)
- -+|||.+
T Consensus 336 ~--p~Pvcv~ 343 (346)
T COG2706 336 V--PEPVCVK 343 (346)
T ss_pred C--CCcEEEE
Confidence 3 5666654
No 10
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=59.63 E-value=33 Score=36.67 Aligned_cols=75 Identities=31% Similarity=0.417 Sum_probs=47.4
Q ss_pred CCCCcEEEEeeCCCCCCcccEEEeeccCCCcccceeEEEEEcCCCccCCCcEEeecCCCCCCCCCCCcEEEEEEEcCCCC
Q 044599 419 AKKSRYVYAAVGDPMPKISGVVKLDVSKGDERRDCIVATRIFGPGCYGGEPFFVARDPENPETEEDDGYVVSYVHDENTG 498 (542)
Q Consensus 419 Gr~~Ry~Y~~~~~~~~~~~gi~K~Dl~tg~~~~~~~~~~~~~~~g~~~gEPiFVPr~~~~~~~~EDDG~Lls~V~d~~~~ 498 (542)
....||+|.+..+ +.|.++|+.+++. +....- +.+|.=|.= ..|+-||++.-+..
T Consensus 45 s~Dgr~~yv~~rd-----g~vsviD~~~~~~-----v~~i~~-----G~~~~~i~~-------s~DG~~~~v~n~~~--- 99 (369)
T PF02239_consen 45 SPDGRYLYVANRD-----GTVSVIDLATGKV-----VATIKV-----GGNPRGIAV-------SPDGKYVYVANYEP--- 99 (369)
T ss_dssp TT-SSEEEEEETT-----SEEEEEETTSSSE-----EEEEE------SSEEEEEEE---------TTTEEEEEEEET---
T ss_pred cCCCCEEEEEcCC-----CeEEEEECCcccE-----EEEEec-----CCCcceEEE-------cCCCCEEEEEecCC---
Confidence 4457999987543 4799999999852 444433 344444432 23455888777654
Q ss_pred eeEEEEEeCCCCCCCeeEEEEcC
Q 044599 499 ESKFLVMDAKSPRLDIVAAVKLP 521 (542)
Q Consensus 499 ~S~l~IlDA~~~~~~pVArv~LP 521 (542)
..+.|||+++ +++|.++...
T Consensus 100 -~~v~v~D~~t--le~v~~I~~~ 119 (369)
T PF02239_consen 100 -GTVSVIDAET--LEPVKTIPTG 119 (369)
T ss_dssp -TEEEEEETTT----EEEEEE--
T ss_pred -CceeEecccc--ccceeecccc
Confidence 5899999999 8999988764
No 11
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=48.50 E-value=3.7e+02 Score=28.75 Aligned_cols=251 Identities=16% Similarity=0.126 Sum_probs=122.2
Q ss_pred CCEEeecCCCCCcceeecccCCCcccccccCCCccCCCCCcEEEEEE--cC---CCCcEEEEEEcC-CCCccceeecccC
Q 044599 203 LPYAIRLTPNGDIETIGRHDFDGKLAMSMTAHPKLDSDTGEAFAFRY--GP---VPPFLTYFRFDA-NGKKQPNVPIFSM 276 (542)
Q Consensus 203 ~Py~i~i~p~~tLeT~G~~d~~g~l~~~ftAHPk~Dp~tGel~~f~~--~~---~~p~~~~~~~~~-~G~~~~~v~i~~~ 276 (542)
.=+.||.+ +++.+|..+-+ + ..|..+-|+.+++|..+. .. ++-.=.+-.+|. .++...++++-.-
T Consensus 28 ~v~ViD~~---~~~v~g~i~~G-~-----~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~ 98 (352)
T TIGR02658 28 QVYTIDGE---AGRVLGMTDGG-F-----LPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEG 98 (352)
T ss_pred eEEEEECC---CCEEEEEEEcc-C-----CCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCC
Confidence 33566643 88888887643 2 344456777777775432 11 111112333443 3444444443111
Q ss_pred CC---CceeeeeecCCcEEEEEecccccChHHHHhCCCCCeeeCCCCCeEEEEEeCCCCCCCceEEeecCCeeEeeeccc
Q 044599 277 TR---PSFLHDFAITKKYAVFVDIQIGMNPMEMIFGGGSPVGADPAKVCRIGIIPRYATDESQMRWFEVPGFNIIHAINA 353 (542)
Q Consensus 277 ~~---p~~iHDfaiTeny~Vf~~~pl~~~~~~~l~~g~~~~~~d~~~~tr~~VipR~~~~~~~v~w~e~p~~f~fH~~NA 353 (542)
|+ ..+-+.|+++.+ |...+.++.+....+.||+-.++ ..++-+++|. |.|...+
T Consensus 99 p~~~~~~~~~~~~ls~d-------------------gk~l~V~n~~p~~~V~VvD~~~~--kvv~ei~vp~--~~~vy~t 155 (352)
T TIGR02658 99 PRFLVGTYPWMTSLTPD-------------------NKTLLFYQFSPSPAVGVVDLEGK--AFVRMMDVPD--CYHIFPT 155 (352)
T ss_pred chhhccCccceEEECCC-------------------CCEEEEecCCCCCEEEEEECCCC--cEEEEEeCCC--CcEEEEe
Confidence 11 234455555543 33445566666678899998764 4567788876 3444444
Q ss_pred ccCCCCCEEEEEeecCCCccccccccccccceEEEEEEeCCCCcEEE--EEccCCCCcCccc-CccCCCCCCcEEEEeeC
Q 044599 354 WDEEDGNAVVMVAPNILSVEHTLDRTDLVHALVEKVRIDLRTGIVTR--RPMSARNLDFGVI-NPAYMAKKSRYVYAAVG 430 (542)
Q Consensus 354 ~Ee~dg~~Ivl~~~~~~~~~~~~~~~~~~~~~L~r~ridl~tg~v~~--~~L~~~~~EfP~I-n~~~~Gr~~Ry~Y~~~~ 430 (542)
=|+.. .+++ ..+.+..++++-. |++.. ..+.+. -+=|.. +|.|.-.-.++.|....
T Consensus 156 ~e~~~---~~~~----------------~Dg~~~~v~~d~~-g~~~~~~~~vf~~-~~~~v~~rP~~~~~dg~~~~vs~e 214 (352)
T TIGR02658 156 ANDTF---FMHC----------------RDGSLAKVGYGTK-GNPKIKPTEVFHP-EDEYLINHPAYSNKSGRLVWPTYT 214 (352)
T ss_pred cCCcc---EEEe----------------ecCceEEEEecCC-CceEEeeeeeecC-CccccccCCceEcCCCcEEEEecC
Confidence 33321 1111 0123344444432 33221 122111 122222 22343334677886532
Q ss_pred CCCCCcccEEEeeccCCCcccceeEEEEEcC---CCccCC--CcEEeecCCCCCCCCCCCcEEEEEEEcCC-----CCee
Q 044599 431 DPMPKISGVVKLDVSKGDERRDCIVATRIFG---PGCYGG--EPFFVARDPENPETEEDDGYVVSYVHDEN-----TGES 500 (542)
Q Consensus 431 ~~~~~~~gi~K~Dl~tg~~~~~~~~~~~~~~---~g~~~g--EPiFVPr~~~~~~~~EDDG~Lls~V~d~~-----~~~S 500 (542)
+.|.-+|+...............++ +++-++ || +. -.-|.+.|.+..|... ....
T Consensus 215 ------G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~--ia-------~~~dg~~lyV~~~~~~~~thk~~~~ 279 (352)
T TIGR02658 215 ------GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQ--VA-------YHRARDRIYLLADQRAKWTHKTASR 279 (352)
T ss_pred ------CeEEEEecCCCcceecceeeeccccccccccCCCccee--EE-------EcCCCCEEEEEecCCccccccCCCC
Confidence 4677778655421000001111111 122221 23 21 1235566766666433 3446
Q ss_pred EEEEEeCCCCCCCeeEEEEcCCc
Q 044599 501 KFLVMDAKSPRLDIVAAVKLPRR 523 (542)
Q Consensus 501 ~l~IlDA~~~~~~pVArv~LP~r 523 (542)
+++|+|+++ .+.++++.+-.+
T Consensus 280 ~V~ViD~~t--~kvi~~i~vG~~ 300 (352)
T TIGR02658 280 FLFVVDAKT--GKRLRKIELGHE 300 (352)
T ss_pred EEEEEECCC--CeEEEEEeCCCc
Confidence 999999999 899999998653
No 12
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=36.33 E-value=1.1e+02 Score=20.96 Aligned_cols=27 Identities=19% Similarity=0.472 Sum_probs=20.8
Q ss_pred eeEEEEEeCCCCCCCeeEEEEcCCcCCCCc
Q 044599 499 ESKFLVMDAKSPRLDIVAAVKLPRRVPYGF 528 (542)
Q Consensus 499 ~S~l~IlDA~~~~~~pVArv~LP~rvP~GF 528 (542)
...+.|||+++ ...+.++.+. .-|.++
T Consensus 13 ~~~v~~id~~~--~~~~~~i~vg-~~P~~i 39 (42)
T TIGR02276 13 SNTVSVIDTAT--NKVIATIPVG-GYPFGV 39 (42)
T ss_pred CCEEEEEECCC--CeEEEEEECC-CCCceE
Confidence 45788899988 7889999884 566654
No 13
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=29.01 E-value=1.8e+02 Score=27.81 Aligned_cols=65 Identities=29% Similarity=0.438 Sum_probs=41.3
Q ss_pred ccEEEeeccCCCcccceeEEEEEcCCCccCCCcEEeecCCCCCCCCCCCcEEEEEEEcCCCCeeEEEEEeCCCCCCCeeE
Q 044599 437 SGVVKLDVSKGDERRDCIVATRIFGPGCYGGEPFFVARDPENPETEEDDGYVVSYVHDENTGESKFLVMDAKSPRLDIVA 516 (542)
Q Consensus 437 ~gi~K~Dl~tg~~~~~~~~~~~~~~~g~~~gEPiFVPr~~~~~~~~EDDG~Lls~V~d~~~~~S~l~IlDA~~~~~~pVA 516 (542)
..|..+|..+|++ +|+..++++ .+.++.-+- -++|+|++. +....|..+|+++ -+.+.
T Consensus 3 g~l~~~d~~tG~~-----~W~~~~~~~--~~~~~~~~~--------~~~~~v~~~-----~~~~~l~~~d~~t--G~~~W 60 (238)
T PF13360_consen 3 GTLSALDPRTGKE-----LWSYDLGPG--IGGPVATAV--------PDGGRVYVA-----SGDGNLYALDAKT--GKVLW 60 (238)
T ss_dssp SEEEEEETTTTEE-----EEEEECSSS--CSSEEETEE--------EETTEEEEE-----ETTSEEEEEETTT--SEEEE
T ss_pred CEEEEEECCCCCE-----EEEEECCCC--CCCccceEE--------EeCCEEEEE-----cCCCEEEEEECCC--CCEEE
Confidence 3588899999953 566555432 122220011 145666666 2567899999998 77899
Q ss_pred EEEcCCc
Q 044599 517 AVKLPRR 523 (542)
Q Consensus 517 rv~LP~r 523 (542)
+..++..
T Consensus 61 ~~~~~~~ 67 (238)
T PF13360_consen 61 RFDLPGP 67 (238)
T ss_dssp EEECSSC
T ss_pred Eeecccc
Confidence 9998654
Done!