Query 044599
Match_columns 542
No_of_seqs 231 out of 1090
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 08:09:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044599.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044599hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zaka2 g.41.2.1 (A:128-158) M 39.2 3.1 0.00023 25.9 0.1 16 236-251 3-18 (31)
2 d1qksa2 b.70.2.1 (A:136-567) C 21.9 40 0.0029 31.9 5.0 33 487-521 381-413 (432)
3 d1qksa2 b.70.2.1 (A:136-567) C 21.1 3E+02 0.022 25.2 12.2 104 390-521 46-150 (432)
4 d1l0qa2 b.69.2.3 (A:1-301) Sur 19.0 2.3E+02 0.017 23.1 10.5 87 421-534 210-296 (301)
5 d1hzua2 b.70.2.1 (A:118-543) C 17.8 47 0.0034 30.9 4.4 33 487-521 375-407 (426)
6 d1qnia2 b.69.3.1 (A:10-450) Ni 15.8 1.4E+02 0.0099 28.9 7.4 83 422-523 83-177 (441)
7 d1l0qa2 b.69.2.3 (A:1-301) Sur 14.9 2.1E+02 0.015 23.4 7.9 73 423-522 2-74 (301)
8 d1pbyb_ b.69.2.2 (B:) Quinohem 13.2 3.2E+02 0.023 22.5 8.8 74 423-522 2-76 (337)
9 d1jmxb_ b.69.2.2 (B:) Quinohem 12.2 1.7E+02 0.012 24.6 6.4 61 437-521 272-332 (346)
10 d1m7ja2 b.92.1.6 (A:420-480) N 11.3 26 0.0019 24.6 0.2 35 500-536 8-42 (61)
No 1
>d1zaka2 g.41.2.1 (A:128-158) Microbial and mitochondrial ADK, insert "zinc finger" domain {Maize (Zea mays) [TaxId: 4577]}
Probab=39.24 E-value=3.1 Score=25.87 Aligned_cols=16 Identities=38% Similarity=0.899 Sum_probs=12.8
Q ss_pred ccCCCCCcEEEEEEcC
Q 044599 236 KLDSDTGEAFAFRYGP 251 (542)
Q Consensus 236 k~Dp~tGel~~f~~~~ 251 (542)
+.||+|||+|-.-|+.
T Consensus 3 R~DP~TG~iYH~~f~p 18 (31)
T d1zaka2 3 RLDPVTGKIYHLKYSP 18 (31)
T ss_dssp EECTTTCCEEESSSSC
T ss_pred cCCCCCCcEeEEecCC
Confidence 4799999998876654
No 2
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}
Probab=21.86 E-value=40 Score=31.95 Aligned_cols=33 Identities=27% Similarity=0.299 Sum_probs=27.5
Q ss_pred EEEEEEEcCCCCeeEEEEEeCCCCCCCeeEEEEcC
Q 044599 487 YVVSYVHDENTGESKFLVMDAKSPRLDIVAAVKLP 521 (542)
Q Consensus 487 ~Lls~V~d~~~~~S~l~IlDA~~~~~~pVArv~LP 521 (542)
+|++-+....+..+.++|+|+++ .+..++++-|
T Consensus 381 ~v~~S~~~~~~~~g~i~i~D~~T--~k~~~~i~~~ 413 (432)
T d1qksa2 381 EVWFSVWNGKDQESALVVVDDKT--LELKHVIKDE 413 (432)
T ss_dssp EEEEEEECCTTSCCEEEEEETTT--TEEEEEECCT
T ss_pred EEEEEEecCCCCCCcEEEEECCC--ceEEeEecCC
Confidence 77777777777888999999999 7788888775
No 3
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}
Probab=21.05 E-value=3e+02 Score=25.21 Aligned_cols=104 Identities=16% Similarity=0.124 Sum_probs=55.7
Q ss_pred EEeCCCCcEEEEEccCCCCcCcccCccCCCCCCcEEEEeeCCCCCCcccEEEeeccCCCcccceeEEEEEcCCCccCCCc
Q 044599 390 RIDLRTGIVTRRPMSARNLDFGVINPAYMAKKSRYVYAAVGDPMPKISGVVKLDVSKGDERRDCIVATRIFGPGCYGGEP 469 (542)
Q Consensus 390 ridl~tg~v~~~~L~~~~~EfP~In~~~~Gr~~Ry~Y~~~~~~~~~~~gi~K~Dl~tg~~~~~~~~~~~~~~~g~~~gEP 469 (542)
-+|++|+++.++.-... .|. .-..-.-.||+|.+..+ +.+-.+|+.|++. ..+... ..+ .+|
T Consensus 46 v~D~~t~~v~~~~~~g~---~~~--~v~fSpDG~~l~~~s~d-----g~v~~~d~~t~~~---~~~~~i--~~~---~~~ 107 (432)
T d1qksa2 46 LIDGSTYEIKTVLDTGY---AVH--ISRLSASGRYLFVIGRD-----GKVNMIDLWMKEP---TTVAEI--KIG---SEA 107 (432)
T ss_dssp EEETTTCCEEEEEECSS---CEE--EEEECTTSCEEEEEETT-----SEEEEEETTSSSC---CEEEEE--ECC---SEE
T ss_pred EEECCCCcEEEEEeCCC---Cee--EEEECCCCCEEEEEcCC-----CCEEEEEeeCCCc---eEEEEE--ecC---CCC
Confidence 45777887765532221 111 11112245899976443 4688899988741 112111 111 223
Q ss_pred E-EeecCCCCCCCCCCCcEEEEEEEcCCCCeeEEEEEeCCCCCCCeeEEEEcC
Q 044599 470 F-FVARDPENPETEEDDGYVVSYVHDENTGESKFLVMDAKSPRLDIVAAVKLP 521 (542)
Q Consensus 470 i-FVPr~~~~~~~~EDDG~Lls~V~d~~~~~S~l~IlDA~~~~~~pVArv~LP 521 (542)
. ++-.+ . -..|.-+|++...+. ..+.|+|+.+ .++++.+...
T Consensus 108 ~~~~~s~-~---~SpDG~~l~vs~~~~----~~v~i~d~~t--~~~~~~~~~~ 150 (432)
T d1qksa2 108 RSIETSK-M---EGWEDKYAIAGAYWP----PQYVIMDGET--LEPKKIQSTR 150 (432)
T ss_dssp EEEEECC-S---TTCTTTEEEEEEEET----TEEEEEETTT--CCEEEEEECC
T ss_pred CCeEEec-c---cCCCCCEEEEEcCCC----CeEEEEeCcc--ccceeeeccC
Confidence 2 22221 1 234555887665543 4688999998 7888887764
No 4
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}
Probab=18.98 E-value=2.3e+02 Score=23.14 Aligned_cols=87 Identities=21% Similarity=0.237 Sum_probs=49.4
Q ss_pred CCcEEEEeeCCCCCCcccEEEeeccCCCcccceeEEEEEcCCCccCCCcEEeecCCCCCCCCCCCcEEEEEEEcCCCCee
Q 044599 421 KSRYVYAAVGDPMPKISGVVKLDVSKGDERRDCIVATRIFGPGCYGGEPFFVARDPENPETEEDDGYVVSYVHDENTGES 500 (542)
Q Consensus 421 ~~Ry~Y~~~~~~~~~~~gi~K~Dl~tg~~~~~~~~~~~~~~~g~~~gEPiFVPr~~~~~~~~EDDG~Lls~V~d~~~~~S 500 (542)
..++.|.+..+. ..+.|..+|+.+++. ...+..+ ++|.-|.=. .|..+|++.. .. ..
T Consensus 210 ~g~~~~v~~~~~--~~~~v~v~D~~t~~~-----~~~~~~~-----~~~~~va~s-------pdg~~l~va~--~~--~~ 266 (301)
T d1l0qa2 210 EGTKAYVTNVDK--YFNTVSMIDTGTNKI-----TARIPVG-----PDPAGIAVT-------PDGKKVYVAL--SF--CN 266 (301)
T ss_dssp TSSEEEEEEECS--SCCEEEEEETTTTEE-----EEEEECC-----SSEEEEEEC-------TTSSEEEEEE--TT--TT
T ss_pred cccccccccccc--eeeeeeeeecCCCeE-----EEEEcCC-----CCEEEEEEe-------CCCCEEEEEE--CC--CC
Confidence 345566544332 235688899988831 2232222 344444322 2334665443 22 24
Q ss_pred EEEEEeCCCCCCCeeEEEEcCCcCCCCccccccc
Q 044599 501 KFLVMDAKSPRLDIVAAVKLPRRVPYGFHGLFVR 534 (542)
Q Consensus 501 ~l~IlDA~~~~~~pVArv~LP~rvP~GFHG~fv~ 534 (542)
.+.|+|+++ .+.++++.+- .-|++. |.|+.
T Consensus 267 ~i~v~D~~t--~~~~~~~~vg-~~P~~~-g~f~~ 296 (301)
T d1l0qa2 267 TVSVIDTAT--NTITATMAVG-KNPYAS-GQFIG 296 (301)
T ss_dssp EEEEEETTT--TEEEEEEECS-SSEECC-SSCEE
T ss_pred eEEEEECCC--CeEEEEEeCC-CCCcEe-EEEcc
Confidence 788999998 7889988764 347776 55554
No 5
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=17.83 E-value=47 Score=30.89 Aligned_cols=33 Identities=33% Similarity=0.375 Sum_probs=26.8
Q ss_pred EEEEEEEcCCCCeeEEEEEeCCCCCCCeeEEEEcC
Q 044599 487 YVVSYVHDENTGESKFLVMDAKSPRLDIVAAVKLP 521 (542)
Q Consensus 487 ~Lls~V~d~~~~~S~l~IlDA~~~~~~pVArv~LP 521 (542)
+|++.++......+.+.|+|+++ .++++++.-+
T Consensus 375 ~i~vs~~~~~~~~~~i~v~D~~T--~k~~~~i~~~ 407 (426)
T d1hzua2 375 EVWFSVWNGKNDSSALVVVDDKT--LKLKAVVKDP 407 (426)
T ss_dssp EEEEEECCCTTSCCEEEEEETTT--TEEEEEECCT
T ss_pred EEEEEEecCCCCCCeEEEEECCC--CeEEEEECCC
Confidence 77777777777788899999999 7888887654
No 6
>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}
Probab=15.78 E-value=1.4e+02 Score=28.87 Aligned_cols=83 Identities=11% Similarity=0.090 Sum_probs=45.7
Q ss_pred CcEEEEeeCCCCCCcccEEEeeccCCCcccceeEEEEEcCCCccCCCcEEeecCCCCCCCCCCCcEEEEEE---------
Q 044599 422 SRYVYAAVGDPMPKISGVVKLDVSKGDERRDCIVATRIFGPGCYGGEPFFVARDPENPETEEDDGYVVSYV--------- 492 (542)
Q Consensus 422 ~Ry~Y~~~~~~~~~~~gi~K~Dl~tg~~~~~~~~~~~~~~~g~~~gEPiFVPr~~~~~~~~EDDG~Lls~V--------- 492 (542)
-||+|..-.. -+.|+.+|++|++. .+....+.+.-+.--.|.|.+ . -.|+++.-
T Consensus 83 Gr~lfV~d~~----~~rVavIDl~t~k~-----~~ii~iP~g~gphgi~~spdg-~-------t~YV~~~~~~~v~~~~d 145 (441)
T d1qnia2 83 GKYLFINDKA----NTRVARIRLDIMKT-----DKITHIPNVQAIHGLRLQKVP-K-------TNYVFCNAEFVIPQPND 145 (441)
T ss_dssp EEEEEEEETT----TTEEEEEETTTTEE-----EEEEECTTCCCEEEEEECCSS-B-------CCEEEEEECSCEESSCS
T ss_pred CCEEEEEcCC----CCEEEEEECCCCcE-----eeEEecCCCCCccceEEeccC-C-------EEEEEeccCCcccccCc
Confidence 5888876432 26899999999842 222223322222222344432 1 12433221
Q ss_pred ---EcCCCCeeEEEEEeCCCCCCCeeEEEEcCCc
Q 044599 493 ---HDENTGESKFLVMDAKSPRLDIVAAVKLPRR 523 (542)
Q Consensus 493 ---~d~~~~~S~l~IlDA~~~~~~pVArv~LP~r 523 (542)
.+.....+.+.++|+.+ ++.++++.++..
T Consensus 146 g~~~~~~~~~~~~~~iD~~t--~~v~~qI~v~~~ 177 (441)
T d1qnia2 146 GTDFSLDNSYTMFTAIDAET--MDVAWQVIVDGN 177 (441)
T ss_dssp SSCCCGGGEEEEEEEEETTT--CSEEEEEEESSC
T ss_pred ccccccccccceEEeecCcc--ceeeEEEecCCC
Confidence 12223345667899999 888899888754
No 7
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}
Probab=14.93 E-value=2.1e+02 Score=23.43 Aligned_cols=73 Identities=18% Similarity=0.238 Sum_probs=43.2
Q ss_pred cEEEEeeCCCCCCcccEEEeeccCCCcccceeEEEEEcCCCccCCCcEEeecCCCCCCCCCCCcEEEEEEEcCCCCeeEE
Q 044599 423 RYVYAAVGDPMPKISGVVKLDVSKGDERRDCIVATRIFGPGCYGGEPFFVARDPENPETEEDDGYVVSYVHDENTGESKF 502 (542)
Q Consensus 423 Ry~Y~~~~~~~~~~~gi~K~Dl~tg~~~~~~~~~~~~~~~g~~~gEPiFVPr~~~~~~~~EDDG~Lls~V~d~~~~~S~l 502 (542)
-|+|.+..+ -+.|..+|+++++. +..+..+ +.|.=|.= ..|..+|++... ....+
T Consensus 2 ~~~yV~~~~----~~~v~v~D~~t~~~-----~~~i~~g-----~~p~~va~-------spdG~~l~v~~~----~~~~i 56 (301)
T d1l0qa2 2 TFAYIANSE----SDNISVIDVTSNKV-----TATIPVG-----SNPMGAVI-------SPDGTKVYVANA----HSNDV 56 (301)
T ss_dssp EEEEEEETT----TTEEEEEETTTTEE-----EEEEECS-----SSEEEEEE-------CTTSSEEEEEEG----GGTEE
T ss_pred eEEEEEECC----CCEEEEEECCCCeE-----EEEEECC-----CCceEEEE-------eCCCCEEEEEEC----CCCEE
Confidence 488876432 25689999999842 3444433 33432221 234457653321 22468
Q ss_pred EEEeCCCCCCCeeEEEEcCC
Q 044599 503 LVMDAKSPRLDIVAAVKLPR 522 (542)
Q Consensus 503 ~IlDA~~~~~~pVArv~LP~ 522 (542)
.|+|.++ .+.++++....
T Consensus 57 ~v~d~~t--~~~~~~~~~~~ 74 (301)
T d1l0qa2 57 SIIDTAT--NNVIATVPAGS 74 (301)
T ss_dssp EEEETTT--TEEEEEEECSS
T ss_pred EEEECCC--Cceeeeeeccc
Confidence 8999998 77888877653
No 8
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}
Probab=13.25 E-value=3.2e+02 Score=22.48 Aligned_cols=74 Identities=14% Similarity=0.153 Sum_probs=42.0
Q ss_pred cEEEEeeCCCCCCcccEEEeeccCCCcccceeEEEEEcC-CCccCCCcEEeecCCCCCCCCCCCcEEEEEEEcCCCCeeE
Q 044599 423 RYVYAAVGDPMPKISGVVKLDVSKGDERRDCIVATRIFG-PGCYGGEPFFVARDPENPETEEDDGYVVSYVHDENTGESK 501 (542)
Q Consensus 423 Ry~Y~~~~~~~~~~~gi~K~Dl~tg~~~~~~~~~~~~~~-~g~~~gEPiFVPr~~~~~~~~EDDG~Lls~V~d~~~~~S~ 501 (542)
+|++.+..+ +.|.-+|+++++. +.....+ .+..+....|-|. .-+|++.- .....
T Consensus 2 ~~~vt~~~d-----~~v~v~D~~s~~~-----~~~i~~~~~~~~~~~i~~spD----------g~~l~v~~----~~~~~ 57 (337)
T d1pbyb_ 2 DYILAPARP-----DKLVVIDTEKMAV-----DKVITIADAGPTPMVPMVAPG----------GRIAYATV----NKSES 57 (337)
T ss_dssp EEEEEEETT-----TEEEEEETTTTEE-----EEEEECTTCTTCCCCEEECTT----------SSEEEEEE----TTTTE
T ss_pred eEEEEEcCC-----CEEEEEECCCCeE-----EEEEECCCCCCCccEEEECCC----------CCEEEEEE----CCCCe
Confidence 466654433 6788899998831 2222222 2333333333332 22554321 22246
Q ss_pred EEEEeCCCCCCCeeEEEEcCC
Q 044599 502 FLVMDAKSPRLDIVAAVKLPR 522 (542)
Q Consensus 502 l~IlDA~~~~~~pVArv~LP~ 522 (542)
+.|+|..+ .+.+.++.++.
T Consensus 58 v~v~D~~t--~~~~~~~~~~~ 76 (337)
T d1pbyb_ 58 LVKIDLVT--GETLGRIDLST 76 (337)
T ss_dssp EEEEETTT--CCEEEEEECCB
T ss_pred EEEEECCC--CcEEEEEecCC
Confidence 99999998 78899988863
No 9
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}
Probab=12.16 E-value=1.7e+02 Score=24.62 Aligned_cols=61 Identities=15% Similarity=0.096 Sum_probs=0.0
Q ss_pred ccEEEeeccCCCcccceeEEEEEcCCCccCCCcEEeecCCCCCCCCCCCcEEEEEEEcCCCCeeEEEEEeCCCCCCCeeE
Q 044599 437 SGVVKLDVSKGDERRDCIVATRIFGPGCYGGEPFFVARDPENPETEEDDGYVVSYVHDENTGESKFLVMDAKSPRLDIVA 516 (542)
Q Consensus 437 ~gi~K~Dl~tg~~~~~~~~~~~~~~~g~~~gEPiFVPr~~~~~~~~EDDG~Lls~V~d~~~~~S~l~IlDA~~~~~~pVA 516 (542)
+.|..+|+.++ ........+..+.--.|-|+ +. +|.+.-.| ..+.|+|+++ .+.|+
T Consensus 272 ~~v~v~d~~~~-------~~~~~~~~~~~~~~va~s~D--G~--------~l~v~~~d-----~~v~v~D~~t--~~~i~ 327 (346)
T d1jmxb_ 272 NRLAKYDLKQR-------KLIKAANLDHTYYCVAFDKK--GD--------KLYLGGTF-----NDLAVFNPDT--LEKVK 327 (346)
T ss_dssp SEEEEEETTTT-------EEEEEEECSSCCCEEEECSS--SS--------CEEEESBS-----SEEEEEETTT--TEEEE
T ss_pred CeEEEEECCCC-------cEEEEEcCCCCEEEEEEcCC--CC--------EEEEEeCC-----CcEEEEECcc--CCEEE
Q ss_pred EEEcC
Q 044599 517 AVKLP 521 (542)
Q Consensus 517 rv~LP 521 (542)
++++|
T Consensus 328 ~i~~p 332 (346)
T d1jmxb_ 328 NIKLP 332 (346)
T ss_dssp EEECS
T ss_pred EEECC
No 10
>d1m7ja2 b.92.1.6 (A:420-480) N-acyl-D-aminoacid amidohydrolase {Alcaligenes faecalis [TaxId: 511]}
Probab=11.33 E-value=26 Score=24.55 Aligned_cols=35 Identities=23% Similarity=0.400 Sum_probs=27.8
Q ss_pred eEEEEEeCCCCCCCeeEEEEcCCcCCCCccccccccc
Q 044599 500 SKFLVMDAKSPRLDIVAAVKLPRRVPYGFHGLFVRQA 536 (542)
Q Consensus 500 S~l~IlDA~~~~~~pVArv~LP~rvP~GFHG~fv~~~ 536 (542)
..|+|||..++ ..-|..+-|...+-|++..|++..
T Consensus 8 ADlvvfDp~~i--~d~~~~~~~~~~~~Gi~~v~VnG~ 42 (61)
T d1m7ja2 8 ADLVVFDPATV--ADSATFEHPTERAAGIHSVYVNGA 42 (61)
T ss_dssp CCEEEECTTTC--BCCCCSSSTTCCCBSEEEEEETTE
T ss_pred CCEEEECHHHc--cCcccccccccccceeEEEEECCE
Confidence 57889999885 445677788889999999998864
Done!