BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044600
         (104 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1VKZ|A Chain A, Crystal Structure Of Phosphoribosylamine--Glycine Ligase
           (Tm1250) From Thermotoga Maritima At 2.30 A Resolution
 pdb|1VKZ|B Chain B, Crystal Structure Of Phosphoribosylamine--Glycine Ligase
           (Tm1250) From Thermotoga Maritima At 2.30 A Resolution
          Length = 412

 Score = 26.6 bits (57), Expect = 3.6,   Method: Composition-based stats.
 Identities = 9/16 (56%), Positives = 12/16 (75%)

Query: 73  GDPYIVEQNPHINDPD 88
           GDPYI+E N  + DP+
Sbjct: 279 GDPYILEYNVRLGDPE 294


>pdb|1UIP|A Chain A, Adenosine Deaminase (His 238 Glu Mutant)
          Length = 349

 Score = 25.8 bits (55), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 13/44 (29%), Positives = 22/44 (50%)

Query: 41  GQVTQPRNVNKPCDEIYVVREGETLHTISEKCGDPYIVEQNPHI 84
           G+V  P  V +  D +   R GE  HTI ++     ++++N H 
Sbjct: 213 GEVGSPEVVREAVDILKTERVGEGYHTIEDEALYNRLLKENMHF 256


>pdb|3GCE|A Chain A, Ferredoxin Of Carbazole 1,9a-Dioxygenase From
          Nocardioides Aromaticivorans Ic177
          Length = 121

 Score = 25.4 bits (54), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 9/19 (47%), Positives = 15/19 (78%)

Query: 54 DEIYVVREGETLHTISEKC 72
          DE+ VVR+G++++ IS  C
Sbjct: 33 DEVMVVRDGDSVYAISNLC 51


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.136    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,134,663
Number of Sequences: 62578
Number of extensions: 118143
Number of successful extensions: 238
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 234
Number of HSP's gapped (non-prelim): 4
length of query: 104
length of database: 14,973,337
effective HSP length: 69
effective length of query: 35
effective length of database: 10,655,455
effective search space: 372940925
effective search space used: 372940925
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)