BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044600
(104 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P0ADE6|YGAU_ECOLI Uncharacterized protein YgaU OS=Escherichia coli (strain K12)
GN=ygaU PE=1 SV=2
Length = 149
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 53 CDEIYVVREGETLHTISEKC---GDPY--IVEQN-PHINDPDDVFPGLVIKI 98
+ Y V+ G+TL IS++ + Y I E N P + PD ++PG V++I
Sbjct: 95 ASQFYTVKSGDTLSAISKQVYGNANLYNKIFEANKPMLKSPDKIYPGQVLRI 146
>sp|P0ADE7|YGAU_ECOL6 Uncharacterized protein YgaU OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=ygaU PE=3 SV=2
Length = 149
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 53 CDEIYVVREGETLHTISEKC---GDPY--IVEQN-PHINDPDDVFPGLVIKI 98
+ Y V+ G+TL IS++ + Y I E N P + PD ++PG V++I
Sbjct: 95 ASQFYTVKSGDTLSAISKQVYGNANLYNKIFEANKPMLKSPDKIYPGQVLRI 146
>sp|Q89KG1|CLPP2_BRAJA ATP-dependent Clp protease proteolytic subunit 2 OS=Bradyrhizobium
japonicum (strain USDA 110) GN=clpP2 PE=3 SV=1
Length = 211
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 7/42 (16%)
Query: 36 SGGFMGQVT-------QPRNVNKPCDEIYVVREGETLHTISE 70
SGGF GQ T + N+ K +EIYV G+T TI +
Sbjct: 134 SGGFQGQATDIMLHAQEILNLKKRLNEIYVKHTGQTYKTIED 175
>sp|Q6B4J5|EXSA_BACCE Spore coat assembly protein ExsA OS=Bacillus cereus GN=exsA PE=2
SV=1
Length = 643
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 32/46 (69%), Gaps = 2/46 (4%)
Query: 55 EIYVVREGETLHTISEKCGDPY--IVEQNPHINDPDDVFPGLVIKI 98
+I++V++G+TL I++K G + + + N +++PD + PG+ IK+
Sbjct: 2 KIHIVQKGDTLWKIAKKYGVDFDTLKKTNTQLSNPDLIMPGMKIKV 47
>sp|C0H403|YKZQ_BACSU Uncharacterized protein YkzQ OS=Bacillus subtilis (strain 168)
GN=ykzQ PE=4 SV=1
Length = 75
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 46 PRNVNKPCD-EIYVVREGETLHTISEKCGDPYIVEQNPHIND--PDDVFPGLVIKI 98
PR + P E+Y V G+TL TI++ P V+Q ++N D ++PG +IKI
Sbjct: 19 PRYMEFPVTYEVYHVESGDTLWTIAKSFEIP--VQQLMNLNKLSSDRIYPGQIIKI 72
>sp|A0AIC1|DPO3_LISW6 DNA polymerase III PolC-type OS=Listeria welshimeri serovar 6b
(strain ATCC 35897 / DSM 20650 / SLCC5334) GN=polC PE=3
SV=1
Length = 1444
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 45 QPRNVNKPCDEIYVVREGETLHTI-------SEKCGDPYIVEQNPHINDP-DDVFPGLVI 96
QP+ V P E +VR+ + L I EK G P + N H DP D ++ ++I
Sbjct: 700 QPKPVYAPLIERELVRDEKALEEILKNIVRVGEKAGKPVVATGNVHYKDPVDKIYRKILI 759
>sp|Q8Y7G1|DPO3_LISMO DNA polymerase III PolC-type OS=Listeria monocytogenes serovar 1/2a
(strain ATCC BAA-679 / EGD-e) GN=polC PE=3 SV=1
Length = 1444
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 45 QPRNVNKPCDEIYVVREGETLHTI-------SEKCGDPYIVEQNPHINDP-DDVFPGLVI 96
QP+ V P E +VR+ + L I EK G P + N H DP D ++ ++I
Sbjct: 700 QPKPVYAPLIERELVRDEKALEEILKNIVRVGEKTGKPVVATGNVHYKDPVDKIYRKILI 759
>sp|O32062|SAFA_BACSU SpoIVD-associated factor A OS=Bacillus subtilis (strain 168)
GN=safA PE=1 SV=1
Length = 387
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 32/48 (66%), Gaps = 6/48 (12%)
Query: 55 EIYVVREGETLHTISEKCGDPYIVEQ----NPHINDPDDVFPGLVIKI 98
+I++V++G++L I+EK G VE+ N +++PD + PG+ IK+
Sbjct: 2 KIHIVQKGDSLWKIAEKYG--VDVEEVKKLNTQLSNPDLIMPGMKIKV 47
>sp|Q720A2|DPO3_LISMF DNA polymerase III PolC-type OS=Listeria monocytogenes serotype 4b
(strain F2365) GN=polC PE=3 SV=1
Length = 1444
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 45 QPRNVNKPCDEIYVVREGETLHTI-------SEKCGDPYIVEQNPHINDP-DDVFPGLVI 96
QP+ V P E +VR+ + L I EK G P + N H DP D ++ ++I
Sbjct: 700 QPKPVYAPLIERELVRDEKALEEILKNIVRVGEKTGKPVVATGNVHYKDPVDKIYRKILI 759
>sp|Q92C34|DPO3_LISIN DNA polymerase III PolC-type OS=Listeria innocua serovar 6a (strain
CLIP 11262) GN=polC PE=3 SV=1
Length = 1444
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 45 QPRNVNKPCDEIYVVREGETLHTI-------SEKCGDPYIVEQNPHINDP-DDVFPGLVI 96
QP+ V P E +VR+ + L I EK G P + N H DP D ++ ++I
Sbjct: 700 QPKPVYAPLIERELVRDEKALEEILKNIVRVGEKTGKPVVATGNVHYKDPVDKIYRKILI 759
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,456,894
Number of Sequences: 539616
Number of extensions: 1497465
Number of successful extensions: 2749
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2744
Number of HSP's gapped (non-prelim): 12
length of query: 104
length of database: 191,569,459
effective HSP length: 73
effective length of query: 31
effective length of database: 152,177,491
effective search space: 4717502221
effective search space used: 4717502221
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)