Query 044600
Match_columns 104
No_of_seqs 172 out of 1885
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 08:10:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044600.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044600hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1e0g_A Membrane-bound lytic mu 99.5 3.2E-14 1.1E-18 78.5 4.8 43 55-100 3-47 (48)
2 2l9y_A CVNH-LYSM lectin; carbo 99.5 3.9E-14 1.3E-18 97.7 5.6 49 52-101 60-110 (167)
3 2djp_A Hypothetical protein SB 99.4 9.9E-14 3.4E-18 83.9 3.1 46 55-101 16-63 (77)
4 4eby_A Chitin elicitor recepto 99.1 5.2E-11 1.8E-15 84.7 5.2 46 55-100 10-65 (212)
5 4eby_A Chitin elicitor recepto 99.0 2.2E-10 7.6E-15 81.4 4.3 44 55-100 79-127 (212)
6 4a1k_A Putative L, D-transpept 98.9 8E-10 2.7E-14 75.7 4.2 44 55-100 3-48 (165)
7 2gu1_A Zinc peptidase; alpha/b 98.5 2.4E-08 8.2E-13 75.6 1.7 47 54-100 7-58 (361)
8 2gu1_A Zinc peptidase; alpha/b 97.4 4.7E-05 1.6E-09 57.4 2.0 45 55-99 101-151 (361)
9 3slu_A M23 peptidase domain pr 97.2 0.00036 1.2E-08 53.1 4.6 46 54-99 14-64 (371)
10 2l9y_A CVNH-LYSM lectin; carbo 94.8 0.00027 9.2E-09 48.2 -6.3 33 55-87 126-160 (167)
11 2l32_A Small archaeal modifier 66.0 3.1 0.00011 24.1 1.8 44 56-99 14-60 (74)
12 3ah7_A [2Fe-2S]ferredoxin; [2F 56.3 9.4 0.00032 23.3 2.8 21 54-74 16-36 (113)
13 3qax_A Probable ABC transporte 55.0 4.3 0.00015 27.0 1.2 12 63-74 59-70 (268)
14 4edp_A ABC transporter, substr 54.9 2.6 8.7E-05 29.6 0.0 25 10-34 4-28 (351)
15 2kmm_A Guanosine-3',5'-BIS(dip 52.4 10 0.00034 21.0 2.3 46 54-99 10-61 (73)
16 1i7h_A Ferredoxin; 2Fe-2S,elec 51.8 12 0.00042 22.7 2.8 21 54-74 16-36 (111)
17 1frr_A Ferredoxin I; electron 49.2 14 0.00048 21.5 2.7 21 55-75 13-33 (95)
18 2bt6_A Adrenodoxin 1; rutheniu 47.6 16 0.00056 21.9 2.9 20 56-75 20-39 (108)
19 1xlq_A Putidaredoxin, PDX; [2F 47.0 18 0.00062 21.6 3.1 21 55-75 13-33 (106)
20 1frd_A Heterocyst [2Fe-2S] fer 46.5 14 0.00048 21.7 2.5 21 55-75 16-36 (98)
21 1jq4_A Methane monooxygenase c 45.5 12 0.00041 22.1 2.0 22 54-75 16-37 (98)
22 4gd5_A Phosphate ABC transport 45.1 9.8 0.00034 26.4 1.8 25 10-34 5-29 (279)
23 2wlb_A ETP1-FD, electron trans 44.8 18 0.00062 21.5 2.8 20 55-74 16-35 (103)
24 1uwm_A Ferredoxin VI, FDVI; el 44.7 17 0.00057 21.8 2.6 21 55-75 13-33 (106)
25 3tlk_A Ferrienterobactin-bindi 44.2 5.6 0.00019 28.4 0.4 25 15-39 5-29 (326)
26 1b9r_A Protein (terpredoxin); 41.4 18 0.00063 21.5 2.4 21 55-75 13-33 (105)
27 2y5c_A Adrenodoxin-like protei 40.8 20 0.00067 21.6 2.5 19 56-74 19-37 (109)
28 2lfc_A Fumarate reductase, fla 39.5 13 0.00046 24.1 1.7 19 58-76 91-109 (160)
29 3lxf_A Ferredoxin; iron, iron- 38.7 25 0.00084 21.2 2.7 21 55-75 13-33 (104)
30 1awd_A Ferredoxin; electron tr 37.5 23 0.0008 20.6 2.4 21 55-75 12-32 (94)
31 1a70_A Ferredoxin; iron-sulfur 37.4 24 0.00082 20.7 2.5 21 55-75 14-34 (97)
32 1czp_A Ferredoxin I; [2Fe-2S] 36.6 25 0.00085 20.7 2.5 21 55-75 16-36 (98)
33 1iue_A Ferredoxin; electron tr 36.0 26 0.00088 20.6 2.5 21 55-75 14-34 (98)
34 1l5p_A Ferredoxin; [2Fe-2S] cl 33.1 18 0.00063 21.1 1.4 20 56-75 13-32 (93)
35 1ryj_A Unknown; beta/alpha pro 30.3 26 0.0009 19.5 1.7 43 56-98 17-63 (70)
36 3hui_A Ferredoxin; cytochrome 29.9 30 0.001 21.8 2.1 21 55-75 34-54 (126)
37 1doi_A 2Fe-2S ferredoxin; halo 29.0 47 0.0016 20.8 2.9 20 56-75 39-58 (128)
38 2kse_A Sensor protein QSEC; me 28.5 7.2 0.00025 24.5 -1.1 25 1-25 1-25 (186)
39 3ggy_A Increased sodium tolera 27.8 25 0.00085 24.1 1.5 14 63-76 171-184 (193)
40 1wri_A Ferredoxin II, ferredox 27.7 45 0.0016 19.3 2.5 19 55-73 13-31 (93)
41 2glo_A Brinker CG9653-PA; prot 26.8 36 0.0012 17.9 1.8 17 60-76 19-39 (59)
42 1tyg_B YJBS; alpha beta barrel 26.4 16 0.00054 21.8 0.3 45 54-98 27-80 (87)
43 3uor_A ABC transporter sugar b 25.7 13 0.00043 27.6 -0.4 24 12-35 3-26 (458)
44 3frr_A Uncharacterized protein 24.7 21 0.00071 24.5 0.6 14 63-76 166-179 (191)
45 2kl0_A Putative thiamin biosyn 24.7 11 0.00036 21.6 -0.7 44 55-99 8-59 (73)
46 2k5p_A THis protein, thiamine- 23.5 19 0.00067 20.8 0.3 45 55-99 8-63 (78)
47 1tc3_C Protein (TC3 transposas 23.3 43 0.0015 15.9 1.6 17 60-76 19-35 (51)
48 3omb_A Extracellular solute-bi 23.0 20 0.00068 27.1 0.3 12 23-34 18-29 (535)
49 3slu_A M23 peptidase domain pr 21.7 1.6E+02 0.0056 21.9 5.1 37 62-99 117-159 (371)
No 1
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=99.49 E-value=3.2e-14 Score=78.46 Aligned_cols=43 Identities=26% Similarity=0.469 Sum_probs=39.1
Q ss_pred ceEEECCCCchHHHHHHcCChH--HHHhCCCCCCCCCcCCCCEEEeCC
Q 044600 55 EIYVVREGETLHTISEKCGDPY--IVEQNPHINDPDDVFPGLVIKITP 100 (104)
Q Consensus 55 ~~y~V~~GDTL~~IA~~~g~~~--i~~~N~~l~~~~~l~~Gq~L~ip~ 100 (104)
.+|+|++|||||+||++||+++ +.+.|+ +++.|++||+|.||.
T Consensus 3 ~~y~V~~GDtl~~Ia~~~~~~~~~l~~~N~---~~~~l~~G~~l~ip~ 47 (48)
T 1e0g_A 3 ITYRVRKGDSLSSIAKRHGVNIKDVMRWNS---DTANLQPGDKLTLFV 47 (48)
T ss_dssp CEEEECTTCCHHHHHHHHTCCHHHHHHHCS---CGGGCCTTEEEECCC
T ss_pred EEEEEcCCCcHHHHHHHHCcCHHHHHHhCC---CCCcCCcCCEEEEec
Confidence 4799999999999999999998 888886 567899999999995
No 2
>2l9y_A CVNH-LYSM lectin; carbohydrate, sugar binding protein; NMR {Magnaporthe oryzae 70-15}
Probab=99.48 E-value=3.9e-14 Score=97.67 Aligned_cols=49 Identities=24% Similarity=0.493 Sum_probs=44.0
Q ss_pred CCCceEEECCCCchHHHHHHcCChH--HHHhCCCCCCCCCcCCCCEEEeCCC
Q 044600 52 PCDEIYVVREGETLHTISEKCGDPY--IVEQNPHINDPDDVFPGLVIKITPF 101 (104)
Q Consensus 52 ~~~~~y~V~~GDTL~~IA~~~g~~~--i~~~N~~l~~~~~l~~Gq~L~ip~~ 101 (104)
....+|+||+|||||.||++||+.| |.+.| ++.+|+.|+|||+|+||..
T Consensus 60 ~~~~~y~V~~GDTL~~IA~~~~~~~~~l~~~N-~~~~~~~i~~Gq~L~ip~~ 110 (167)
T 2l9y_A 60 GGTATVTVQQGDTLRDIGRRFDCDFHEIARRN-NIQNEDLIYPGQVLQVPTK 110 (167)
T ss_dssp CSCEEEEECTTCCHHHHHHHTTCCHHHHHHHH-TCCGGGCCCTTEEEEESCC
T ss_pred CCCceEEECCCCcHHHHHHHcCCCHHHHHHHc-CCCCcccccCCCEEEEcCC
Confidence 3457899999999999999999999 77777 7889999999999999954
No 3
>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=9.9e-14 Score=83.93 Aligned_cols=46 Identities=22% Similarity=0.257 Sum_probs=40.7
Q ss_pred ceEEECCCCchHHHHHHcCChH--HHHhCCCCCCCCCcCCCCEEEeCCC
Q 044600 55 EIYVVREGETLHTISEKCGDPY--IVEQNPHINDPDDVFPGLVIKITPF 101 (104)
Q Consensus 55 ~~y~V~~GDTL~~IA~~~g~~~--i~~~N~~l~~~~~l~~Gq~L~ip~~ 101 (104)
.+|+|++|||||.||++|++++ |.+.| ++.+++.|++||+|.||..
T Consensus 16 ~~y~V~~GDTL~~IA~~~~~~~~~l~~~N-~l~~~~~l~~Gq~l~iP~~ 63 (77)
T 2djp_A 16 LEHQLEPGDTLAGLALKYGVTMEQIKRAN-RLYTNDSIFLKKTLYIPIL 63 (77)
T ss_dssp EEECCCTTCCHHHHHHHHTCCHHHHHHHH-TCCCSSCGGGSSCEEEEEE
T ss_pred EEEEECCCCcHHHHHHHHCcCHHHHHHHc-CCCCccccCCCCEEEECCC
Confidence 4699999999999999999998 77887 6767789999999999953
No 4
>4eby_A Chitin elicitor receptor kinase 1; pathogen-associated molecular patterns, pattern recognition receptors, LYSM, lysine chitin oligomer; HET: NAG BMA; 1.65A {Arabidopsis thaliana} PDB: 4ebz_A*
Probab=99.13 E-value=5.2e-11 Score=84.68 Aligned_cols=46 Identities=24% Similarity=0.359 Sum_probs=41.3
Q ss_pred ceEEECCCCchHHHHHHcCCh---------H-HHHhCCCCCCCCCcCCCCEEEeCC
Q 044600 55 EIYVVREGETLHTISEKCGDP---------Y-IVEQNPHINDPDDVFPGLVIKITP 100 (104)
Q Consensus 55 ~~y~V~~GDTL~~IA~~~g~~---------~-i~~~N~~l~~~~~l~~Gq~L~ip~ 100 (104)
..|+|++|||||.||++||++ . |.+.||++.+++.|++||+|.||.
T Consensus 10 ~~Y~V~~GDTL~~IA~~~~vsv~~~~~~~~~~I~~~Np~l~~~~~l~~Gq~L~IP~ 65 (212)
T 4eby_A 10 ASYYLENGTTLSVINQNLNSSIAPYDQINFDPILRYNSNIKDKDRIQMGSRVLVPF 65 (212)
T ss_dssp EEEECCTTCCHHHHHHHTCCSSSCCCSSCCHHHHTTCTTCSCTTSCCTTCEEEEEE
T ss_pred EEEEeCCCCCHHHHHHHHCCCchhccccCHHHHHHhccCCCCcCccCCCCEEEEec
Confidence 369999999999999999876 5 888888997788999999999994
No 5
>4eby_A Chitin elicitor receptor kinase 1; pathogen-associated molecular patterns, pattern recognition receptors, LYSM, lysine chitin oligomer; HET: NAG BMA; 1.65A {Arabidopsis thaliana} PDB: 4ebz_A*
Probab=99.01 E-value=2.2e-10 Score=81.42 Aligned_cols=44 Identities=14% Similarity=0.285 Sum_probs=38.8
Q ss_pred ceEEECCCCchHHHH-HHcC--ChH--HHHhCCCCCCCCCcCCCCEEEeCC
Q 044600 55 EIYVVREGETLHTIS-EKCG--DPY--IVEQNPHINDPDDVFPGLVIKITP 100 (104)
Q Consensus 55 ~~y~V~~GDTL~~IA-~~~g--~~~--i~~~N~~l~~~~~l~~Gq~L~ip~ 100 (104)
.+|+|++|||||.|| ++|+ +++ |.+.|+ + +++.|++||+|.||.
T Consensus 79 ~~Y~V~~GDTL~~IA~~~y~~lvt~~~L~~~N~-~-~~~~l~~Gq~L~IP~ 127 (212)
T 4eby_A 79 FSYSVRQEDTYERVAISNYANLTTMESLQARNP-F-PATNIPLSATLNVLV 127 (212)
T ss_dssp EEEECCTTCCHHHHHHTTTTTSSCHHHHHHHCC-S-CTTCCCTTCEEEEEE
T ss_pred eEEEecCCCcHHHHHHHhcCCCCCHHHHHHhcC-C-CcccCCCCCEEEEcC
Confidence 579999999999999 7998 888 888886 6 568999999999994
No 6
>4a1k_A Putative L, D-transpeptidase YKUD; transferase, peptidoglycan synthesis; HET: CME; 1.75A {Bacillus subtilis} PDB: 4a1j_A 4a1i_A* 1y7m_A 3zqd_A 4a52_A*
Probab=98.92 E-value=8e-10 Score=75.72 Aligned_cols=44 Identities=25% Similarity=0.439 Sum_probs=39.2
Q ss_pred ceEEECCCCchHHHHHHcCChH--HHHhCCCCCCCCCcCCCCEEEeCC
Q 044600 55 EIYVVREGETLHTISEKCGDPY--IVEQNPHINDPDDVFPGLVIKITP 100 (104)
Q Consensus 55 ~~y~V~~GDTL~~IA~~~g~~~--i~~~N~~l~~~~~l~~Gq~L~ip~ 100 (104)
.+|+||+||||++||++|++++ +.++||.+ |+ .+++||.|.||.
T Consensus 3 ~~y~V~~GdtL~~IA~~f~~g~~~l~~aNp~v-d~-~l~~g~~i~ip~ 48 (165)
T 4a1k_A 3 LTYQVKQGDTLNSIAADFRISTAALLQANPSL-QA-GLTAGQSIVIPG 48 (165)
T ss_dssp EEEECCTTCCHHHHHHHTTCCHHHHHHHCGGG-GG-CCCTTCEEEETT
T ss_pred EEEEECCCCCHHHHHHHhCCCHHHHHHhCccC-CC-ccCCCccccCcc
Confidence 3799999999999999999988 99999987 55 478999999985
No 7
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=98.51 E-value=2.4e-08 Score=75.55 Aligned_cols=47 Identities=26% Similarity=0.331 Sum_probs=38.3
Q ss_pred CceEEECCCCchHHHHHHcCChH--HHHhCCCC---CCCCCcCCCCEEEeCC
Q 044600 54 DEIYVVREGETLHTISEKCGDPY--IVEQNPHI---NDPDDVFPGLVIKITP 100 (104)
Q Consensus 54 ~~~y~V~~GDTL~~IA~~~g~~~--i~~~N~~l---~~~~~l~~Gq~L~ip~ 100 (104)
...|+|++|||||.|+++||++. +.+.|+.. .+.+.|++||+|.||.
T Consensus 7 ~~~~~Vk~GDTL~~Ia~r~gvs~~~l~~~n~~~~~~~~~~~L~~Gq~L~i~~ 58 (361)
T 2gu1_A 7 RIHYMVKVGDTLSGIFAQLGVPYSILQKILSVDLDHLQLDMIQPGEELELMM 58 (361)
T ss_dssp CEEEECCTTCCHHHHHHHTTCCHHHHHHHHHHGGGTCCGGGCCTTCEEEEEE
T ss_pred ceEEEECCCCcHHHHHHHcCCCHHHHHHHHhhcccccchhcCCCCCEEEEEE
Confidence 45899999999999999999988 66666322 1356899999999984
No 8
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=97.43 E-value=4.7e-05 Score=57.42 Aligned_cols=45 Identities=9% Similarity=0.085 Sum_probs=33.7
Q ss_pred ceEEECCCCchHHHHHHcCChH--HHHhCCC----CCCCCCcCCCCEEEeC
Q 044600 55 EIYVVREGETLHTISEKCGDPY--IVEQNPH----INDPDDVFPGLVIKIT 99 (104)
Q Consensus 55 ~~y~V~~GDTL~~IA~~~g~~~--i~~~N~~----l~~~~~l~~Gq~L~ip 99 (104)
..|.++.|||||.||++||++. +.+.|+- +.-...|++||++.|+
T Consensus 101 ~~~~v~igdSL~~iA~~~Gvs~~~i~~ln~i~~~~idf~~~Lr~GD~l~V~ 151 (361)
T 2gu1_A 101 ILFSGEINGSFSVSARRVGLTSSQVANITQVMKDKIDFSRSLRAGDRFDIL 151 (361)
T ss_dssp EEEEEESSSCHHHHHHHTTCCHHHHHHHHHHHTTTCCTTTCCCC-CEEEEE
T ss_pred EEEEEEECCcHHHHHHHcCCCHHHHHHHHHhhcccccccccCCCCCEEEEE
Confidence 3588999999999999999987 6666522 2111469999999986
No 9
>3slu_A M23 peptidase domain protein; outer membrane, hydrolase; 2.41A {Neisseria meningitidis}
Probab=97.20 E-value=0.00036 Score=53.11 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=33.8
Q ss_pred CceEEECCCCchHHHHHHcCChH-----HHHhCCCCCCCCCcCCCCEEEeC
Q 044600 54 DEIYVVREGETLHTISEKCGDPY-----IVEQNPHINDPDDVFPGLVIKIT 99 (104)
Q Consensus 54 ~~~y~V~~GDTL~~IA~~~g~~~-----i~~~N~~l~~~~~l~~Gq~L~ip 99 (104)
...|+|++||||..|-+++|++. +++......+...|+|||.|.+.
T Consensus 14 W~~~~V~~GDTL~~IL~r~Gls~~di~~i~~~~~~~~~l~~LrpGq~l~i~ 64 (371)
T 3slu_A 14 WVQEAVQPGDSLADVLARSGMARDEIARITEKYGGEADLRHLRADQSVHVL 64 (371)
T ss_dssp EEEEECCTTCCHHHHHHHTTCCHHHHHHHHTTC------CCBCSSSEEEEE
T ss_pred eEEEEECCCCcHHHHHHHcCCCHHHHHHHHHhccccCchhhCCCCCEEEEE
Confidence 45799999999999999999975 44444333456789999999985
No 10
>2l9y_A CVNH-LYSM lectin; carbohydrate, sugar binding protein; NMR {Magnaporthe oryzae 70-15}
Probab=94.82 E-value=0.00027 Score=48.21 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=26.3
Q ss_pred ceEEECCCCchHHHHHHcCChH--HHHhCCCCCCC
Q 044600 55 EIYVVREGETLHTISEKCGDPY--IVEQNPHINDP 87 (104)
Q Consensus 55 ~~y~V~~GDTL~~IA~~~g~~~--i~~~N~~l~~~ 87 (104)
.+|.|++|||||.||++||..+ ++.+|+.|.++
T Consensus 126 ~~~~v~~GdtL~aIA~r~G~~v~s~i~Ln~~I~N~ 160 (167)
T 2l9y_A 126 DVRLVDGGKVLEAELRYSGGWNRSRIYLDEHIGNR 160 (167)
T ss_dssp EEEEETTTTEEEEEEEETTEEEEEEECGGGTEEES
T ss_pred eEEEeCCcCChHHHHHHcCCceEEEEEcccccCcC
Confidence 5799999999999999998765 66677666443
No 11
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=66.01 E-value=3.1 Score=24.08 Aligned_cols=44 Identities=11% Similarity=-0.035 Sum_probs=34.5
Q ss_pred eEEECCCCchHHHHHHcCChH---HHHhCCCCCCCCCcCCCCEEEeC
Q 044600 56 IYVVREGETLHTISEKCGDPY---IVEQNPHINDPDDVFPGLVIKIT 99 (104)
Q Consensus 56 ~y~V~~GDTL~~IA~~~g~~~---i~~~N~~l~~~~~l~~Gq~L~ip 99 (104)
.+.+..|-|+.++-+++|++. +...|..+-+.+.+..|++|.|=
T Consensus 14 ~~ev~~g~Tv~dLL~~Lgl~~~~VvV~vNG~~v~~d~~l~GD~VeIv 60 (74)
T 2l32_A 14 EVAVDDDGTYADLVRAVDLSPHEVTVLVDGRPVPEDQSVEVDRVKVL 60 (74)
T ss_dssp EEECSTTCSHHHHHHTTCCCSSCCCEECCCCCCCTTSSSCCCCEEEC
T ss_pred eEEcCCCCcHHHHHHHcCCCcceEEEEECCEECCHHHCCCCCEEEEE
Confidence 467889999999999999876 66677655555666679998874
No 12
>3ah7_A [2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur cluster biosynthes pseudomonas, metal binding protein; 1.90A {Pseudomonas putida}
Probab=56.27 E-value=9.4 Score=23.26 Aligned_cols=21 Identities=10% Similarity=0.088 Sum_probs=18.6
Q ss_pred CceEEECCCCchHHHHHHcCC
Q 044600 54 DEIYVVREGETLHTISEKCGD 74 (104)
Q Consensus 54 ~~~y~V~~GDTL~~IA~~~g~ 74 (104)
...+.+.+|+||.+.+.+.|+
T Consensus 16 ~~~v~~~~g~tlL~aa~~~Gi 36 (113)
T 3ah7_A 16 GLTVEVKPGTNILELAHDHHI 36 (113)
T ss_dssp CEEEECCTTCBHHHHHHHTTC
T ss_pred CeEEEECCCCcHHHHHHHcCC
Confidence 457899999999999999976
No 13
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=55.02 E-value=4.3 Score=26.96 Aligned_cols=12 Identities=42% Similarity=0.556 Sum_probs=7.8
Q ss_pred CchHHHHHHcCC
Q 044600 63 ETLHTISEKCGD 74 (104)
Q Consensus 63 DTL~~IA~~~g~ 74 (104)
|.+-.|+++.|.
T Consensus 59 dl~~~i~~~~g~ 70 (268)
T 3qax_A 59 DLAKAISEKLGK 70 (268)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHhCC
Confidence 346667777776
No 14
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC 13124, center for structural genomics of infectious DI csgid; 1.85A {Clostridium perfringens}
Probab=54.89 E-value=2.6 Score=29.55 Aligned_cols=25 Identities=16% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccC
Q 044600 10 LAEKIAWHCALFMAIMLVLSCCESS 34 (104)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~la~~~~~ 34 (104)
|+++....+++++++++++++|+..
T Consensus 4 Mkk~~~~~~~~~~~~~~~lagC~~~ 28 (351)
T 4edp_A 4 MKKKILATLLTGLVLGTSLVGCGKT 28 (351)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhheeCCC
Confidence 4444333333344444567888754
No 15
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=52.39 E-value=10 Score=20.98 Aligned_cols=46 Identities=13% Similarity=0.061 Sum_probs=31.3
Q ss_pred CceEEECCCCchHHHHHHcCChH-----HHHhCCCCCC-CCCcCCCCEEEeC
Q 044600 54 DEIYVVREGETLHTISEKCGDPY-----IVEQNPHIND-PDDVFPGLVIKIT 99 (104)
Q Consensus 54 ~~~y~V~~GDTL~~IA~~~g~~~-----i~~~N~~l~~-~~~l~~Gq~L~ip 99 (104)
+..+.+..|-|+.++++..+... ..+.|+.+.+ ...|..|..|.+-
T Consensus 10 g~~~~~~~g~T~~dla~~i~~~l~~~~vaa~vNg~lvdl~~~L~~~~~Veiv 61 (73)
T 2kmm_A 10 GEIKRLPQGATALDFAYSLHSDLGDHCIGAKVNHKLVPLSYVLNSGDQVEVL 61 (73)
T ss_dssp CCEEEECTTCBHHHHHHHHCSHHHHTEEEEEETTEECCTTCBCCSSSBEEEE
T ss_pred CCEEEcCCCCcHHHHHHHHhhccccceEEEEECCEEeCCCcCcCCCCEEEEE
Confidence 34678899999999999986543 3345655433 2457788877664
No 16
>1i7h_A Ferredoxin; 2Fe-2S,electron transport; 1.70A {Escherichia coli} SCOP: d.15.4.1
Probab=51.80 E-value=12 Score=22.67 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=18.4
Q ss_pred CceEEECCCCchHHHHHHcCC
Q 044600 54 DEIYVVREGETLHTISEKCGD 74 (104)
Q Consensus 54 ~~~y~V~~GDTL~~IA~~~g~ 74 (104)
...+.+.+|+||.+.+.+.|+
T Consensus 16 ~~~~~~~~g~tlL~a~~~~gi 36 (111)
T 1i7h_A 16 GAVLEANSGETILDAALRNGI 36 (111)
T ss_dssp CEEEECCTTCBHHHHHHHTTC
T ss_pred CeEEEeCCCCcHHHHHHHcCC
Confidence 457889999999999999875
No 17
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=49.18 E-value=14 Score=21.52 Aligned_cols=21 Identities=29% Similarity=0.276 Sum_probs=18.3
Q ss_pred ceEEECCCCchHHHHHHcCCh
Q 044600 55 EIYVVREGETLHTISEKCGDP 75 (104)
Q Consensus 55 ~~y~V~~GDTL~~IA~~~g~~ 75 (104)
..+.+.+|+||.+.+++.|+.
T Consensus 13 ~~~~~~~g~tlL~a~~~~gi~ 33 (95)
T 1frr_A 13 FTLDVPEGTTILDAAEEAGYD 33 (95)
T ss_dssp EEEEECTTCCHHHHHHHTTCC
T ss_pred EEEEeCCCCcHHHHHHHcCCC
Confidence 468899999999999999763
No 18
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=47.63 E-value=16 Score=21.90 Aligned_cols=20 Identities=10% Similarity=0.019 Sum_probs=17.4
Q ss_pred eEEECCCCchHHHHHHcCCh
Q 044600 56 IYVVREGETLHTISEKCGDP 75 (104)
Q Consensus 56 ~y~V~~GDTL~~IA~~~g~~ 75 (104)
.+.+.+|+||.+.|.++|++
T Consensus 20 ~v~~~~g~tLL~aa~~~gi~ 39 (108)
T 2bt6_A 20 TTKGKIGDSLLDVVVQNNLD 39 (108)
T ss_dssp EEEEETTCBHHHHHHHTTCC
T ss_pred EEEECCCChHHHHHHHcCCC
Confidence 67889999999999998763
No 19
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=46.99 E-value=18 Score=21.58 Aligned_cols=21 Identities=19% Similarity=0.091 Sum_probs=18.5
Q ss_pred ceEEECCCCchHHHHHHcCCh
Q 044600 55 EIYVVREGETLHTISEKCGDP 75 (104)
Q Consensus 55 ~~y~V~~GDTL~~IA~~~g~~ 75 (104)
..+.+.+|+||.+.|.+.|++
T Consensus 13 ~~~~~~~g~tlLeaa~~~gi~ 33 (106)
T 1xlq_A 13 RELDVADGVSLMQAAVSNGIY 33 (106)
T ss_dssp EEEECCTTCBHHHHHHHTTCT
T ss_pred EEEEECCCCcHHHHHHHcCCC
Confidence 468899999999999999765
No 20
>1frd_A Heterocyst [2Fe-2S] ferredoxin; electron transport; 1.70A {Nostoc SP} SCOP: d.15.4.1
Probab=46.54 E-value=14 Score=21.72 Aligned_cols=21 Identities=19% Similarity=0.121 Sum_probs=18.4
Q ss_pred ceEEECCCCchHHHHHHcCCh
Q 044600 55 EIYVVREGETLHTISEKCGDP 75 (104)
Q Consensus 55 ~~y~V~~GDTL~~IA~~~g~~ 75 (104)
..+.+.+|+||.+.+++.|+.
T Consensus 16 ~~~~~~~g~tlL~a~~~~gi~ 36 (98)
T 1frd_A 16 TTIEIDEETTILDGAEENGIE 36 (98)
T ss_dssp EEEEEETTSCHHHHHHHTTCC
T ss_pred EEEEeCCCCcHHHHHHHcCCC
Confidence 468899999999999999864
No 21
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=45.48 E-value=12 Score=22.09 Aligned_cols=22 Identities=14% Similarity=-0.000 Sum_probs=18.5
Q ss_pred CceEEECCCCchHHHHHHcCCh
Q 044600 54 DEIYVVREGETLHTISEKCGDP 75 (104)
Q Consensus 54 ~~~y~V~~GDTL~~IA~~~g~~ 75 (104)
...+.+.+|+||.+.+++.|+.
T Consensus 16 ~~~~~~~~g~tlL~a~~~~gi~ 37 (98)
T 1jq4_A 16 SLRFECRSDEDVITAALRQNIF 37 (98)
T ss_dssp EEEEEEESCCTHHHHHHHHTCC
T ss_pred cEEEEeCCCChHHHHHHHcCCC
Confidence 3467889999999999998763
No 22
>4gd5_A Phosphate ABC transporter, phosphate-binding PROT; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.70A {Clostridium perfringens}
Probab=45.05 E-value=9.8 Score=26.43 Aligned_cols=25 Identities=8% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccC
Q 044600 10 LAEKIAWHCALFMAIMLVLSCCESS 34 (104)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~la~~~~~ 34 (104)
|++++...+..+++.++++++|...
T Consensus 5 ~kk~~~~~~~~~~l~~~~l~gc~~~ 29 (279)
T 4gd5_A 5 FKKRLIAIIGTIFIGATAMVGCNSG 29 (279)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCC
Confidence 3334433333344445567788754
No 23
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=44.81 E-value=18 Score=21.47 Aligned_cols=20 Identities=10% Similarity=0.139 Sum_probs=17.7
Q ss_pred ceEEECCCCchHHHHHHcCC
Q 044600 55 EIYVVREGETLHTISEKCGD 74 (104)
Q Consensus 55 ~~y~V~~GDTL~~IA~~~g~ 74 (104)
.++.+.+|+||.+.+++.|+
T Consensus 16 ~~~~~~~g~tlL~a~~~~gi 35 (103)
T 2wlb_A 16 IMIEGNEGDSILDLAHANNI 35 (103)
T ss_dssp EEEEECTTCBHHHHHHHTTC
T ss_pred EEEEECCCCHHHHHHHHcCC
Confidence 46889999999999999875
No 24
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=44.72 E-value=17 Score=21.76 Aligned_cols=21 Identities=19% Similarity=0.230 Sum_probs=18.3
Q ss_pred ceEEECCCCchHHHHHHcCCh
Q 044600 55 EIYVVREGETLHTISEKCGDP 75 (104)
Q Consensus 55 ~~y~V~~GDTL~~IA~~~g~~ 75 (104)
..+.+.+|+||.+.|.+.|++
T Consensus 13 ~~~~~~~g~tlL~aa~~~gi~ 33 (106)
T 1uwm_A 13 HEVEAKPGLTVMEAARDNGVP 33 (106)
T ss_dssp EEEECCTTSBHHHHHHTTTCT
T ss_pred EEEEECCCCcHHHHHHHcCCC
Confidence 478899999999999998764
No 25
>3tlk_A Ferrienterobactin-binding periplasmic protein; ferric-enterobactin, trimer, siderophore transport, periplas space, metal transport; HET: EB4; 1.85A {Escherichia coli}
Probab=44.21 E-value=5.6 Score=28.36 Aligned_cols=25 Identities=12% Similarity=0.114 Sum_probs=1.2
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCC
Q 044600 15 AWHCALFMAIMLVLSCCESSDSGGF 39 (104)
Q Consensus 15 ~~~~~~~~~~~~~la~~~~~~~~~~ 39 (104)
+++.+.+++++++|+||+.+.+.+.
T Consensus 5 ~~~~~~~l~~~~~l~gc~~~~~~~~ 29 (326)
T 3tlk_A 5 PLYRNALLLTGLLLSGIAAVQAADW 29 (326)
T ss_dssp ----------------------CCC
T ss_pred HHHHHHHHHHHHHHhcccccccCCC
Confidence 3344445666667789986544433
No 26
>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1
Probab=41.40 E-value=18 Score=21.53 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=18.3
Q ss_pred ceEEECCCCchHHHHHHcCCh
Q 044600 55 EIYVVREGETLHTISEKCGDP 75 (104)
Q Consensus 55 ~~y~V~~GDTL~~IA~~~g~~ 75 (104)
..+.+.+|+||.+.+.+.|++
T Consensus 13 ~~~~~~~g~tlL~aa~~~gi~ 33 (105)
T 1b9r_A 13 YAVDAQDGQSLMEVATQNGVP 33 (105)
T ss_dssp EEEECCTTCCTTHHHHHHTCC
T ss_pred EEEEECCCChHHHHHHHcCCC
Confidence 578899999999999998764
No 27
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=40.83 E-value=20 Score=21.63 Aligned_cols=19 Identities=16% Similarity=0.263 Sum_probs=16.8
Q ss_pred eEEECCCCchHHHHHHcCC
Q 044600 56 IYVVREGETLHTISEKCGD 74 (104)
Q Consensus 56 ~y~V~~GDTL~~IA~~~g~ 74 (104)
.+.+.+|+||.+.|.++|+
T Consensus 19 ~~~~~~g~tlL~aa~~~gi 37 (109)
T 2y5c_A 19 PVSGRVGDNVLHLAQRHGV 37 (109)
T ss_dssp EEEEETTCBHHHHHHHTTC
T ss_pred EEEECCCCcHHHHHHHcCC
Confidence 4778999999999999976
No 28
>2lfc_A Fumarate reductase, flavoprotein subunit; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Lactobacillus plantarum}
Probab=39.49 E-value=13 Score=24.05 Aligned_cols=19 Identities=21% Similarity=0.139 Sum_probs=16.3
Q ss_pred EECCCCchHHHHHHcCChH
Q 044600 58 VVREGETLHTISEKCGDPY 76 (104)
Q Consensus 58 ~V~~GDTL~~IA~~~g~~~ 76 (104)
.+.++|||.++|++.|++.
T Consensus 91 ~~~kadTleeLA~~~gid~ 109 (160)
T 2lfc_A 91 PVFVKGSLESAAEQAGIVV 109 (160)
T ss_dssp CSEECSSHHHHHHHHTCCH
T ss_pred ceEecCCHHHHHHHhCCCH
Confidence 3568899999999999975
No 29
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=38.70 E-value=25 Score=21.15 Aligned_cols=21 Identities=14% Similarity=0.058 Sum_probs=17.8
Q ss_pred ceEEECCCCchHHHHHHcCCh
Q 044600 55 EIYVVREGETLHTISEKCGDP 75 (104)
Q Consensus 55 ~~y~V~~GDTL~~IA~~~g~~ 75 (104)
.++.+.+|+||.+.+.+.|++
T Consensus 13 ~~~~~~~g~tll~a~~~~gi~ 33 (104)
T 3lxf_A 13 TEIQAEPGLSLMEALRDAGID 33 (104)
T ss_dssp EEEECCTTSBHHHHHHHTTCT
T ss_pred EEEEECCCChHHHHHHHcCCC
Confidence 367889999999999998764
No 30
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=37.47 E-value=23 Score=20.63 Aligned_cols=21 Identities=19% Similarity=0.154 Sum_probs=18.1
Q ss_pred ceEEECCCCchHHHHHHcCCh
Q 044600 55 EIYVVREGETLHTISEKCGDP 75 (104)
Q Consensus 55 ~~y~V~~GDTL~~IA~~~g~~ 75 (104)
..+.+.+|+||.+.+.+.|+.
T Consensus 12 ~~~~~~~g~tlL~a~~~~gi~ 32 (94)
T 1awd_A 12 ETIECPEDTYILDAAEEAGLD 32 (94)
T ss_dssp EEEECCTTSCHHHHHHHTTCC
T ss_pred EEEEECCCCcHHHHHHHcCCC
Confidence 467899999999999999763
No 31
>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A
Probab=37.37 E-value=24 Score=20.74 Aligned_cols=21 Identities=10% Similarity=0.037 Sum_probs=18.1
Q ss_pred ceEEECCCCchHHHHHHcCCh
Q 044600 55 EIYVVREGETLHTISEKCGDP 75 (104)
Q Consensus 55 ~~y~V~~GDTL~~IA~~~g~~ 75 (104)
..+.+.+|+||.+.+++.|+.
T Consensus 14 ~~~~~~~g~tlL~a~~~~gi~ 34 (97)
T 1a70_A 14 VEFQCPDDVYILDAAEEEGID 34 (97)
T ss_dssp EEEEEETTSCHHHHHHHTTCC
T ss_pred EEEEeCCCCcHHHHHHHcCCC
Confidence 467899999999999999764
No 32
>1czp_A Ferredoxin I; [2Fe-2S] protein, crystal reduced with dithionite, electron; 1.17A {Nostoc SP} SCOP: d.15.4.1 PDB: 1ewy_C* 1fxa_A 1qt9_A 1qog_A 1j7c_A 1j7b_A 1qof_A 1qob_A 1j7a_A 1qoa_A 1rfk_A 3p63_A 4fxc_A 3ab5_A 1roe_A 2cjn_A 2cjo_A 1off_A 1dox_A 1doy_A ...
Probab=36.61 E-value=25 Score=20.65 Aligned_cols=21 Identities=19% Similarity=0.142 Sum_probs=18.2
Q ss_pred ceEEECCCCchHHHHHHcCCh
Q 044600 55 EIYVVREGETLHTISEKCGDP 75 (104)
Q Consensus 55 ~~y~V~~GDTL~~IA~~~g~~ 75 (104)
..+.+.+|+||.+.+++.|+.
T Consensus 16 ~~~~~~~g~tlL~a~~~~gi~ 36 (98)
T 1czp_A 16 HEIEVPDDEYILDAAEEQGYD 36 (98)
T ss_dssp EEEEEETTSCHHHHHHHTTCC
T ss_pred EEEEeCCCCCHHHHHHHcCCC
Confidence 468899999999999999764
No 33
>1iue_A Ferredoxin; electron transport, iron-sulfur; 1.70A {Plasmodium falciparum} SCOP: d.15.4.1
Probab=36.02 E-value=26 Score=20.63 Aligned_cols=21 Identities=19% Similarity=0.088 Sum_probs=18.1
Q ss_pred ceEEECCCCchHHHHHHcCCh
Q 044600 55 EIYVVREGETLHTISEKCGDP 75 (104)
Q Consensus 55 ~~y~V~~GDTL~~IA~~~g~~ 75 (104)
..+.+.+|+||.+.+++.|+.
T Consensus 14 ~~~~~~~g~tlL~a~~~~gi~ 34 (98)
T 1iue_A 14 KKIECNEDEYILDASERQNVE 34 (98)
T ss_dssp EEEEEETTSCHHHHHHHTTCC
T ss_pred EEEEeCCCCcHHHHHHHcCCC
Confidence 468899999999999999763
No 34
>1l5p_A Ferredoxin; [2Fe-2S] cluster, electron transfer, iron-sulfur protein, metalloprotein, oxidoreductase; 2.20A {Trichomonas vaginalis} SCOP: d.15.4.1
Probab=33.08 E-value=18 Score=21.13 Aligned_cols=20 Identities=20% Similarity=0.220 Sum_probs=17.5
Q ss_pred eEEECCCCchHHHHHHcCCh
Q 044600 56 IYVVREGETLHTISEKCGDP 75 (104)
Q Consensus 56 ~y~V~~GDTL~~IA~~~g~~ 75 (104)
.+.+.+|+||.+.+++.|++
T Consensus 13 ~~~~~~g~tll~a~~~~gi~ 32 (93)
T 1l5p_A 13 QLKFEDDQTLFTVLTEAGLM 32 (93)
T ss_dssp EEECCTTEEHHHHHHTTTSS
T ss_pred EEEECCCChHHHHHHHcCCC
Confidence 67889999999999998764
No 35
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=30.33 E-value=26 Score=19.48 Aligned_cols=43 Identities=21% Similarity=0.397 Sum_probs=31.7
Q ss_pred eEEECCCCchHHHHHHcCChH---HHHhCCCC-CCCCCcCCCCEEEe
Q 044600 56 IYVVREGETLHTISEKCGDPY---IVEQNPHI-NDPDDVFPGLVIKI 98 (104)
Q Consensus 56 ~y~V~~GDTL~~IA~~~g~~~---i~~~N~~l-~~~~~l~~Gq~L~i 98 (104)
.+.+..|-|+.++-+..+.+. .+..|..+ +....|..|++|-|
T Consensus 17 ~~~~~~~~tv~~Ll~~l~~~~~~v~vavN~~~v~~~~~L~~gD~V~i 63 (70)
T 1ryj_A 17 ILESGAPRRIKDVLGELEIPIETVVVKKNGQIVIDEEEIFDGDIIEV 63 (70)
T ss_dssp EEEESSCCBHHHHHHHTTCCTTTEEEEETTEECCTTSBCCTTCEEEE
T ss_pred eEECCCCCcHHHHHHHhCCCCCCEEEEECCEECCCcccCCCCCEEEE
Confidence 477888899999999887644 56667444 33357889998876
No 36
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=29.89 E-value=30 Score=21.75 Aligned_cols=21 Identities=24% Similarity=0.264 Sum_probs=18.0
Q ss_pred ceEEECCCCchHHHHHHcCCh
Q 044600 55 EIYVVREGETLHTISEKCGDP 75 (104)
Q Consensus 55 ~~y~V~~GDTL~~IA~~~g~~ 75 (104)
.++.+.+|+||.+.+.+.|++
T Consensus 34 ~~v~~~~G~tLL~aa~~~gi~ 54 (126)
T 3hui_A 34 RTVEVEEGATVMEAAIRNAIP 54 (126)
T ss_dssp EEEEEETTSBHHHHHHTTTCT
T ss_pred EEEEECCCCcHHHHHHHcCCC
Confidence 567889999999999998764
No 37
>1doi_A 2Fe-2S ferredoxin; halophilic protein, redox protein, iron-sulfur, electron transport; 1.90A {Haloarcula marismortui} SCOP: d.15.4.1 PDB: 1e0z_A* 1e10_A
Probab=29.03 E-value=47 Score=20.83 Aligned_cols=20 Identities=30% Similarity=0.283 Sum_probs=17.9
Q ss_pred eEEECCCCchHHHHHHcCCh
Q 044600 56 IYVVREGETLHTISEKCGDP 75 (104)
Q Consensus 56 ~y~V~~GDTL~~IA~~~g~~ 75 (104)
.+.+.+|+||.+.+.+.|+.
T Consensus 39 ~v~v~~g~tlL~aa~~~Gi~ 58 (128)
T 1doi_A 39 SLEVNEGEYILEAAEAQGYD 58 (128)
T ss_dssp EEECCTTSCHHHHHHHTTCC
T ss_pred EEEECCCCcHHHHHHHcCCC
Confidence 78899999999999999864
No 38
>2kse_A Sensor protein QSEC; methods development, histidine kinase receptor, membrane domain, two-helical hairpin, cell-free synthesis, ATP- binding; NMR {Escherichia coli}
Probab=28.45 E-value=7.2 Score=24.50 Aligned_cols=25 Identities=8% Similarity=0.215 Sum_probs=11.2
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHH
Q 044600 1 MARASSTTELAEKIAWHCALFMAIM 25 (104)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~ 25 (104)
|+|...+..++.++...+.+.++++
T Consensus 1 ~~~m~~~~SLr~RL~l~~~~~~~~~ 25 (186)
T 2kse_A 1 MGKFTQRLSLRVRLTLIFLILASVT 25 (186)
T ss_dssp CCSTTTCSSCCCCSHHHHHHHHHHH
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH
Confidence 5566554444444433333333333
No 39
>3ggy_A Increased sodium tolerance protein 1; ESCRT-III like, phosphoprotein, protein transport, endocytosis; 1.70A {Saccharomyces cerevisiae} PDB: 3ggz_A
Probab=27.81 E-value=25 Score=24.13 Aligned_cols=14 Identities=29% Similarity=0.437 Sum_probs=12.7
Q ss_pred CchHHHHHHcCChH
Q 044600 63 ETLHTISEKCGDPY 76 (104)
Q Consensus 63 DTL~~IA~~~g~~~ 76 (104)
..|.+||+.||++|
T Consensus 171 ~yL~EIA~ey~V~w 184 (193)
T 3ggy_A 171 LYLKEIAKTYDVPY 184 (193)
T ss_dssp HHHHHHHHHTTCCH
T ss_pred HHHHHHHHHcCCCC
Confidence 46899999999999
No 40
>1wri_A Ferredoxin II, ferredoxin; electron transport; 1.20A {Equisetum arvense} SCOP: d.15.4.1
Probab=27.71 E-value=45 Score=19.29 Aligned_cols=19 Identities=26% Similarity=0.309 Sum_probs=16.8
Q ss_pred ceEEECCCCchHHHHHHcC
Q 044600 55 EIYVVREGETLHTISEKCG 73 (104)
Q Consensus 55 ~~y~V~~GDTL~~IA~~~g 73 (104)
..+.+.+|+||.+.+.+.|
T Consensus 13 ~~~~~~~g~tlL~a~~~~g 31 (93)
T 1wri_A 13 ITFDVEPGERLIDIGSEKA 31 (93)
T ss_dssp EEEEECTTSCHHHHHHHHS
T ss_pred EEEEECCCCcHHHHHHHCc
Confidence 4678999999999999887
No 41
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=26.83 E-value=36 Score=17.92 Aligned_cols=17 Identities=12% Similarity=0.071 Sum_probs=13.9
Q ss_pred CCCCc----hHHHHHHcCChH
Q 044600 60 REGET----LHTISEKCGDPY 76 (104)
Q Consensus 60 ~~GDT----L~~IA~~~g~~~ 76 (104)
+.|.+ +.+||++||++.
T Consensus 19 ~~g~s~~~~~~~vA~~~gIs~ 39 (59)
T 2glo_A 19 RNDNDCKGNQRATARKYNIHR 39 (59)
T ss_dssp HHCTTTTTCHHHHHHHTTSCH
T ss_pred HcCCCcchHHHHHHHHHCcCH
Confidence 45667 899999999965
No 42
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=26.37 E-value=16 Score=21.76 Aligned_cols=45 Identities=20% Similarity=0.149 Sum_probs=32.1
Q ss_pred CceEEECCC-CchHHHHHHcCChH---HHHhCCCCCC-----CCCcCCCCEEEe
Q 044600 54 DEIYVVREG-ETLHTISEKCGDPY---IVEQNPHIND-----PDDVFPGLVIKI 98 (104)
Q Consensus 54 ~~~y~V~~G-DTL~~IA~~~g~~~---i~~~N~~l~~-----~~~l~~Gq~L~i 98 (104)
.+.+.+..| -|+.++-+..+.+. .++.|..+-+ ...|..|++|.|
T Consensus 27 Ge~~el~~~~~Tv~dLL~~L~~~~~~vaVavNg~iV~~~~~~~~~L~dGD~Vei 80 (87)
T 1tyg_B 27 GKDVKWKKDTGTIQDLLASYQLENKIVIVERNKEIIGKERYHEVELCDRDVIEI 80 (87)
T ss_dssp TEEECCSSSCCBHHHHHHHTTCTTSCCEEEETTEEECGGGTTTSBCCSSSEEEE
T ss_pred CEEEECCCCCCcHHHHHHHhCCCCCCEEEEECCEECChhhcCCcCCCCCCEEEE
Confidence 345677787 89999999987654 5666754422 246899999877
No 43
>3uor_A ABC transporter sugar binding protein; ALFA/beta protein, periplasmic-binding protein, maltose, SUG binding protein; 2.20A {Xanthomonas axonopodis PV}
Probab=25.69 E-value=13 Score=27.60 Aligned_cols=24 Identities=21% Similarity=0.066 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCC
Q 044600 12 EKIAWHCALFMAIMLVLSCCESSD 35 (104)
Q Consensus 12 ~~~~~~~~~~~~~~~~la~~~~~~ 35 (104)
+|.+.+...+.+++++|+||+...
T Consensus 3 ~~~~~~~~~~~~~~~lLagC~~~~ 26 (458)
T 3uor_A 3 SSHHHHHHSSGLVPRGSHMCERSD 26 (458)
T ss_dssp ------------------------
T ss_pred CcccccccccchhhhhhhcCCCCC
Confidence 344556666777788889998653
No 44
>3frr_A Uncharacterized protein KIAA0174; ESCRT, ESCRT-III, CHMP, IST1, alternative splicing, phosphoprotein, protein binding; 1.80A {Homo sapiens} PDB: 3frs_A
Probab=24.71 E-value=21 Score=24.49 Aligned_cols=14 Identities=29% Similarity=0.470 Sum_probs=12.4
Q ss_pred CchHHHHHHcCChH
Q 044600 63 ETLHTISEKCGDPY 76 (104)
Q Consensus 63 DTL~~IA~~~g~~~ 76 (104)
..|.+||+.||++|
T Consensus 166 ~yL~EIA~~y~V~w 179 (191)
T 3frr_A 166 RYLIEIAKNYNVPY 179 (191)
T ss_dssp HHHHHHHHHHTCCC
T ss_pred HHHHHHHHHcCCCC
Confidence 46999999999987
No 45
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=24.70 E-value=11 Score=21.63 Aligned_cols=44 Identities=18% Similarity=0.092 Sum_probs=31.6
Q ss_pred ceEEECCCCchHHHHHHcCChH---HHHhCCCCCC-----CCCcCCCCEEEeC
Q 044600 55 EIYVVREGETLHTISEKCGDPY---IVEQNPHIND-----PDDVFPGLVIKIT 99 (104)
Q Consensus 55 ~~y~V~~GDTL~~IA~~~g~~~---i~~~N~~l~~-----~~~l~~Gq~L~ip 99 (104)
+.+.+ .+-|+.++-+..+.+. .++.|..+-. ...|..|++|-|=
T Consensus 8 ~~~e~-~~~Tl~~LL~~l~~~~~~vAV~vNg~iVpr~~~~~~~L~dGD~veIv 59 (73)
T 2kl0_A 8 EQREV-QSASVAALMTELDCTGGHFAVALNYDVVPRGKWDETPVTAGDEIEIL 59 (73)
T ss_dssp EEECC-CCSBHHHHHHHTTCCSSSCEEEESSSEECHHHHTTCBCCTTCEEEEE
T ss_pred EEEEc-CCCcHHHHHHHcCCCCCcEEEEECCEECChHHcCcccCCCCCEEEEE
Confidence 35667 8899999999997754 5666755521 2468999999873
No 46
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=23.49 E-value=19 Score=20.77 Aligned_cols=45 Identities=16% Similarity=0.087 Sum_probs=33.2
Q ss_pred ceEEEC--CCCchHHHHHHcCCh-H---HHHhCCCCCCC-----CCcCCCCEEEeC
Q 044600 55 EIYVVR--EGETLHTISEKCGDP-Y---IVEQNPHINDP-----DDVFPGLVIKIT 99 (104)
Q Consensus 55 ~~y~V~--~GDTL~~IA~~~g~~-~---i~~~N~~l~~~-----~~l~~Gq~L~ip 99 (104)
+.+.+. .|-|+.++-+..+.+ . .++.|..+-.. ..|..|++|-|=
T Consensus 8 e~~e~~~~~~~Tl~~LL~~l~~~~~~~vAVavNg~iVpr~~~~~~~L~dGD~IEIv 63 (78)
T 2k5p_A 8 KPSTVDGAESLNVTELLSALKVAQAEYVTVELNGEVLEREAFDATTVKDGDAVEFL 63 (78)
T ss_dssp EEEECSSCSCEEHHHHHHHHTCSCTTTCCEEETTEECCTTHHHHCEECSSBCEEEC
T ss_pred EEEEcCCCCCCcHHHHHHHcCCCCCCcEEEEECCEECChHHcCcccCCCCCEEEEE
Confidence 356777 788999999999877 3 66777655322 468899998874
No 47
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=23.32 E-value=43 Score=15.87 Aligned_cols=17 Identities=24% Similarity=0.214 Sum_probs=14.7
Q ss_pred CCCCchHHHHHHcCChH
Q 044600 60 REGETLHTISEKCGDPY 76 (104)
Q Consensus 60 ~~GDTL~~IA~~~g~~~ 76 (104)
..|-+..+||+.+|++.
T Consensus 19 ~~g~s~~~IA~~lgis~ 35 (51)
T 1tc3_C 19 LLNVSLHEMSRKISRSR 35 (51)
T ss_dssp HTTCCHHHHHHHHTCCH
T ss_pred HcCCCHHHHHHHHCcCH
Confidence 56889999999999965
No 48
>3omb_A Extracellular solute-binding protein, family 1; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG; 2.10A {Bifidobacterium longum subsp}
Probab=22.97 E-value=20 Score=27.09 Aligned_cols=12 Identities=42% Similarity=0.628 Sum_probs=0.0
Q ss_pred HHHHHHHhhccC
Q 044600 23 AIMLVLSCCESS 34 (104)
Q Consensus 23 ~~~~~la~~~~~ 34 (104)
++++.+++|+..
T Consensus 18 ~~~~~laaCg~~ 29 (535)
T 3omb_A 18 ALLGSLSACGGS 29 (535)
T ss_dssp ------------
T ss_pred HHHHHHcccCCC
Confidence 334457888754
No 49
>3slu_A M23 peptidase domain protein; outer membrane, hydrolase; 2.41A {Neisseria meningitidis}
Probab=21.65 E-value=1.6e+02 Score=21.85 Aligned_cols=37 Identities=8% Similarity=0.059 Sum_probs=26.7
Q ss_pred CCchHHHHHHcCChH--HHHhC----CCCCCCCCcCCCCEEEeC
Q 044600 62 GETLHTISEKCGDPY--IVEQN----PHINDPDDVFPGLVIKIT 99 (104)
Q Consensus 62 GDTL~~IA~~~g~~~--i~~~N----~~l~~~~~l~~Gq~L~ip 99 (104)
+++||..+++.|++. +.+.+ -.++- ..|++|+.+.|.
T Consensus 117 ~~Sl~~a~~~agl~~~~~~~l~~i~~~~idf-~~l~~GD~f~v~ 159 (371)
T 3slu_A 117 KTSARGSLARAEVPVEIRESLSGIFAGRFSL-DGLKEGDAVRLI 159 (371)
T ss_dssp SSCHHHHHHHTTCCHHHHHHHHHHHTTTCCT-TCCCTTCEEEEE
T ss_pred eccHHHHHHHcCCCHHHHHHHHHHHccCcCH-HHcCCCCEEEEE
Confidence 789999999999975 22222 24533 479999999884
Done!