BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044601
(213 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P0C8L4|Y4648_ARATH Uncharacterized protein At4g26485 OS=Arabidopsis thaliana
GN=At4g26485 PE=4 SV=1
Length = 209
Score = 179 bits (453), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 98/204 (48%), Positives = 130/204 (63%), Gaps = 4/204 (1%)
Query: 5 TEKWSNHYSSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNV 64
+EKW HYSS +ILLVGEG+FSFSLCLA FG A N+ AT LD+++ ++ KY +AVDN+
Sbjct: 4 SEKWIRHYSSTHKILLVGEGNFSFSLCLASAFGSAMNITATSLDSEDELSIKYMDAVDNI 63
Query: 65 RELEERGCLVFYGVDAMQMSQHFFLRTHKFDRVIYNFPHVG--FIFRENSYCQIQLNKEL 122
L+ GC + + VD MS L ++DR+++NFPH G F RE S I+ +KEL
Sbjct: 64 NILKRYGCDIQHEVDVHTMSFDNSLSLQRYDRIVFNFPHAGSRFFGRELSSRAIESHKEL 123
Query: 123 VKGFLRNAKLLLKEENGEIHVTHKEGDPYNKWELVKKAEKIGLTLQEVVPFCKQDYPGYD 182
V+GFL NAK +L EE+GEIH+THK P++ W + K + GL L + F YPGY
Sbjct: 124 VRGFLENAKEML-EEDGEIHITHKTTYPFSDWGIKKLGKGEGLKLLKKSKFELSHYPGYI 182
Query: 183 NKRAQ-GYLSDAPFHIGDSSTYKF 205
KR G SD F +G+ STY F
Sbjct: 183 TKRGSGGRRSDDYFPVGECSTYMF 206
>sp|Q3UY23|FDXA1_MOUSE Ferredoxin-fold anticodon-binding domain-containing protein 1
homolog OS=Mus musculus GN=Fdxacb1 PE=2 SV=2
Length = 622
Score = 98.6 bits (244), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 101/202 (50%), Gaps = 23/202 (11%)
Query: 16 QRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVF 75
+R+LLVGEG+FSF+ L + ++ AT + + A++N++ L ERG V
Sbjct: 4 RRLLLVGEGNFSFAASLIDGLDPSVSVTATGFQHRAALEGD-PVALENLKRLRERGVEVR 62
Query: 76 YGVDAMQMSQHFFLRTHKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLK 135
+GVD Q+S FDR+ +NFPH G + N+EL+ F ++ +L
Sbjct: 63 FGVDCTQLSHALPADDRDFDRIYFNFPHCG------RKAGVAKNRELLAKFFQSCADVLA 116
Query: 136 EENGEIHVT---HKEGDP--------YNKWELVKKAEKIGLTLQEVVPFCKQDYPGYDNK 184
+ GE+HVT + G P +N W++V A G L +V PF + PGY
Sbjct: 117 KA-GEVHVTLCRGQGGTPADKPQREWHNSWQVVAMAALGGFILSDVCPFSCEAVPGY--- 172
Query: 185 RAQGYLS-DAPFHIGDSSTYKF 205
+ GY S D PFHI + TY F
Sbjct: 173 KCTGYRSQDRPFHIEGALTYIF 194
>sp|O94480|YC6D_SCHPO UPF0617 protein C1919.13c OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=SPCC1919.13c PE=3 SV=1
Length = 282
Score = 97.4 bits (241), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 99/190 (52%), Gaps = 9/190 (4%)
Query: 5 TEKWSNHYSSKQRILLVGEGDFSFSLCL----AREFGFAHNMVATCLDTQETIANKYSNA 60
TE++ + R LL+GEG+FSF+ L GF ++AT D++E + KY +A
Sbjct: 47 TERYVLPFEKNNRFLLLGEGNFSFAFSLLLHHVSSEGF---VLATSYDSKEDLKQKYPDA 103
Query: 61 VDNVRELEERGCLVFYGVDAMQMSQHFFLRTHKFDRVIYNFPHVGFIFRENSYCQIQLNK 120
+ + ++E G V + +DA ++ H L+T KFD + +NFPH G ++ I N+
Sbjct: 104 AEYISKIEINGGKVMHEIDATKLHLHKKLKTQKFDTIFWNFPHSGKGIKDQDR-NILDNQ 162
Query: 121 ELVKGFLRNAKLLLKEENGEIHVTHKEGDPYNKWELVKKAEKIGLTLQEVVPFCKQDYPG 180
+++ F + +K LL E+ G I +T E PY W L A+ G T F YP
Sbjct: 163 KMLLAFFKASKFLLSEK-GVIVITLAETKPYTLWNLKGLAKDAGYTSLMTEKFDSSFYPE 221
Query: 181 YDNKRAQGYL 190
Y ++R G++
Sbjct: 222 YSHRRTIGWI 231
>sp|Q9BRP7|FDXA1_HUMAN Ferredoxin-fold anticodon-binding domain-containing protein 1
OS=Homo sapiens GN=FDXACB1 PE=2 SV=3
Length = 624
Score = 95.5 bits (236), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 109/212 (51%), Gaps = 24/212 (11%)
Query: 14 SKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCL 73
+ +R+LLVGEG+FSF+ L+ + + ATCL +A + A +N++ L ERG
Sbjct: 2 APRRLLLVGEGNFSFAAALSETLDQSTQLTATCLQRPAELA-RDPLAWENLQCLRERGID 60
Query: 74 VFYGVDAMQMSQHFFLRTHKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLL 133
V +GVD Q++ F L +FD++ + FPH G R+ + N+EL+ F ++ +
Sbjct: 61 VRFGVDCTQLADVFELHEREFDQIYFIFPHCG---RKAGVAK---NRELLAKFFQSCADV 114
Query: 134 LKEENGEIHVT---HKEGDP--------YNKWELVKKAEKIGLTLQEVVPFCKQDYPGYD 182
L EE GE+HV + G P +N W++V A GL L +V PF + GY
Sbjct: 115 LAEE-GEVHVALCRGQGGTPADKPQREWHNSWQVVAMAALGGLILSDVYPFSCKAVAGY- 172
Query: 183 NKRAQGYLS-DAPFHIGDSSTYKF-RLFPQNG 212
+ GY S D FH+ + + F R P G
Sbjct: 173 --KCTGYRSQDKSFHVEGALNHIFTRSLPFEG 202
>sp|P40493|YIJ6_YEAST UPF0617 protein YIL096C OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YIL096C PE=1 SV=1
Length = 336
Score = 57.0 bits (136), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 96/220 (43%), Gaps = 51/220 (23%)
Query: 18 ILLVGEGDFSFSLCLARE-FGFAHNMVATCLDTQ-ETIANKYSNAVD-NVRELEERGCLV 74
++L GEGDFSF+ + + + + N++ T D + KY + + N + L++ +
Sbjct: 74 LMLCGEGDFSFARSIVEQNYIESDNLIITSYDNSVNELKLKYPHTFEENYQYLKDLNIPI 133
Query: 75 FYGVDAMQMSQHF-------------FLRTHKF-----DRVIYNFPHVG----------- 105
F+ +D ++ + F L H++ +++NFPH G
Sbjct: 134 FFQIDVTKLVKSFKISKNNTWFKIINRLSDHRWGNKPLQNIVFNFPHNGKGIKDQERNIR 193
Query: 106 ------FIFRENSYCQIQL-NKELVKGFLR------------NAKLLLKEENGEIHVTHK 146
F F +NS L N ++ LR AK L E G I ++
Sbjct: 194 EHQDLIFNFFQNSLQLFNLINTKIQNDTLRYTQGYDLNEDTPQAKKLTAEGYGNIILSLF 253
Query: 147 EGDPYNKWELVKKAEKIGLTLQEVVPFCKQDYPGYDNKRA 186
+G+PY+ W++ A+K GLTL F +++PGY ++R
Sbjct: 254 DGEPYDSWQIKLLAKKNGLTLSRSSKFQWENFPGYHHRRT 293
>sp|A6V262|AMIE_PSEA7 Aliphatic amidase OS=Pseudomonas aeruginosa (strain PA7) GN=amiE
PE=3 SV=1
Length = 346
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 138 NGEIHVTHKEGDPYNKWELVKKAEKIGLTLQEVVPFCKQD--YPGYDNKRAQGYLSDAP 194
GE H H PYN L+ +I ++++P+C + YPG Q Y+SD P
Sbjct: 103 TGERHEEHPRKAPYNTLVLIDNNGEIVQKYRKIIPWCPIEGWYPG-----GQTYVSDGP 156
>sp|P61876|DPOL_PYRWO DNA polymerase OS=Pyrococcus woesei GN=pol PE=1 SV=1
Length = 775
Score = 32.0 bits (71), Expect = 3.4, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 33/48 (68%), Gaps = 5/48 (10%)
Query: 120 KELVKGFLRNAKLLLKEENGEIHVTHKEGDPYNKWELVKKAEKIGLTL 167
+E++K FLR +++E++ +I VT+ GD ++ L K+AEK+G+ L
Sbjct: 188 REMIKRFLR----IIREKDPDIIVTYN-GDSFDFPYLAKRAEKLGIKL 230
>sp|P61875|DPOL_PYRFU DNA polymerase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638
/ JCM 8422 / Vc1) GN=pol PE=1 SV=1
Length = 775
Score = 32.0 bits (71), Expect = 3.4, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 33/48 (68%), Gaps = 5/48 (10%)
Query: 120 KELVKGFLRNAKLLLKEENGEIHVTHKEGDPYNKWELVKKAEKIGLTL 167
+E++K FLR +++E++ +I VT+ GD ++ L K+AEK+G+ L
Sbjct: 188 REMIKRFLR----IIREKDPDIIVTYN-GDSFDFPYLAKRAEKLGIKL 230
>sp|A5W2C0|AMIE_PSEP1 Aliphatic amidase OS=Pseudomonas putida (strain F1 / ATCC 700007)
GN=amiE PE=3 SV=1
Length = 347
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 138 NGEIHVTHKEGDPYNKWELVKKAEKIGLTLQEVVPFCKQD--YPGYDNKRAQGYLSDAP 194
GE H H PYN L+ +I ++++P+C + YPG Q Y++D P
Sbjct: 103 TGERHEEHPRKSPYNTLVLIDNNGEIVQKYRKIIPWCPIEGWYPG-----DQTYVADGP 156
>sp|Q58448|EF2_METJA Elongation factor 2 OS=Methanocaldococcus jannaschii (strain ATCC
43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=fusA PE=3 SV=1
Length = 726
Score = 31.6 bits (70), Expect = 4.4, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 12/67 (17%)
Query: 131 KLLLKEENGEIHVTHKEGDPYNKWEL-VKKAEKIGLTLQEVVPFCKQDYPGYDNKRAQGY 189
K L++ E+G + G YN W + V +K G+T ++++ +C++D R
Sbjct: 190 KWLVRVEDGSVAF----GSAYNNWAISVPFMKKSGITFKDIIKYCEED-------RQDEL 238
Query: 190 LSDAPFH 196
AP H
Sbjct: 239 AEKAPLH 245
>sp|P11436|AMIE_PSEAE Aliphatic amidase OS=Pseudomonas aeruginosa (strain ATCC 15692 /
PAO1 / 1C / PRS 101 / LMG 12228) GN=amiE PE=1 SV=2
Length = 346
Score = 31.6 bits (70), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 138 NGEIHVTHKEGDPYNKWELVKKAEKIGLTLQEVVPFCKQD--YPGYDNKRAQGYLSDAP 194
GE H H PYN L+ +I ++++P+C + YPG Q Y+S+ P
Sbjct: 103 TGERHEEHPRKAPYNTLVLIDNNGEIVQKYRKIIPWCPIEGWYPG-----GQTYVSEGP 156
>sp|Q02QK0|AMIE_PSEAB Aliphatic amidase OS=Pseudomonas aeruginosa (strain UCBPP-PA14)
GN=amiE PE=3 SV=1
Length = 346
Score = 31.2 bits (69), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 138 NGEIHVTHKEGDPYNKWELVKKAEKIGLTLQEVVPFCKQD--YPGYDNKRAQGYLSDAP 194
GE H H PYN L+ +I ++++P+C + YPG Q Y+S+ P
Sbjct: 103 TGERHEEHPRKAPYNTLVLIDNNGEIVQKYRKIIPWCPIEGWYPG-----GQTYVSEGP 156
>sp|B7V2X1|AMIE_PSEA8 Aliphatic amidase OS=Pseudomonas aeruginosa (strain LESB58) GN=amiE
PE=3 SV=1
Length = 346
Score = 31.2 bits (69), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 138 NGEIHVTHKEGDPYNKWELVKKAEKIGLTLQEVVPFCKQD--YPGYDNKRAQGYLSDAP 194
GE H H PYN L+ +I ++++P+C + YPG Q Y+S+ P
Sbjct: 103 TGERHEEHPRKAPYNTLVLIDNNGEIVQKYRKIIPWCPIEGWYPG-----GQTYVSEGP 156
>sp|Q9HH06|DPOL_PYRGL DNA polymerase OS=Pyrococcus glycovorans GN=pol PE=3 SV=1
Length = 775
Score = 31.2 bits (69), Expect = 5.1, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 34/48 (70%), Gaps = 5/48 (10%)
Query: 120 KELVKGFLRNAKLLLKEENGEIHVTHKEGDPYNKWELVKKAEKIGLTL 167
+E++K FL+ +++E++ ++ +T+ GD ++ LVK+AEK+G+ L
Sbjct: 188 REMIKRFLK----VIREKDPDVIITYN-GDSFDLPYLVKRAEKLGIKL 230
>sp|Q6DCX3|KCD15_XENLA BTB/POZ domain-containing protein kctd15 OS=Xenopus laevis
GN=kctd15 PE=2 SV=1
Length = 255
Score = 31.2 bits (69), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 123 VKGFLRNAKLLLKEENGEIHVTHKEGDPYNKWELVKKAEK 162
+ FLR +KLLL E+ EI++ ++E Y +VK+ E+
Sbjct: 87 ILSFLRTSKLLLPEDFKEINLLYEEAKYYQLLPMVKELER 126
>sp|P40472|SIM1_YEAST Protein SIM1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SIM1 PE=1 SV=2
Length = 476
Score = 30.8 bits (68), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 16/112 (14%)
Query: 104 VGFIFRENSYCQIQLNKELVKGFLRN---------AKLLLKEENGEIHVTHKEGDPYNKW 154
G +E SYC + K + LL K NG ++ ++ + D +W
Sbjct: 256 TGGSCKEGSYCSYSCQPGMSKTQWPSDQPSDGRSVGGLLCK--NGYLYRSNTDADYLCEW 313
Query: 155 ELVKKAEKIGLTLQEVVPFCKQDYPGYDNKRAQGYL---SDAPFHIGDSSTY 203
+ +A + L + V C+ DYPG +N Y+ S P + D TY
Sbjct: 314 GV--EAAYVVSKLSKGVAICRTDYPGTENMVIPTYVEGGSSLPLTVVDQDTY 363
>sp|P07264|LEUC_YEAST 3-isopropylmalate dehydratase OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=LEU1 PE=1 SV=3
Length = 779
Score = 30.4 bits (67), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 20/86 (23%)
Query: 102 PHVGFIFRENSY----CQIQLNKELV---------KGF-----LRNAKLLLKEENGEIHV 143
P G IF NS+ I+L+++++ KG L N K+L + +G + V
Sbjct: 649 PSYGDIFYNNSFKNGLLPIRLDQQIIIDKLIPIANKGGKLCVDLPNQKIL--DSDGNVLV 706
Query: 144 THKEGDPYNKWELVKKAEKIGLTLQE 169
H E +P+ K LV + IG+TLQ+
Sbjct: 707 DHFEIEPFRKHCLVNGLDDIGITLQK 732
>sp|Q5FWT8|RCOR2_RAT REST corepressor 2 OS=Rattus norvegicus GN=Rcor2 PE=2 SV=1
Length = 523
Score = 30.4 bits (67), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 162 KIGLTLQEVVPFCKQDYPG-YDNKRAQGYLSDAPFH-IGDSSTYKF 205
++G Q V+P CK + P Y NK +G L +P H + D+ K+
Sbjct: 47 RVGTNYQAVIPECKPESPARYSNKELKGMLVWSPNHCVSDAKLDKY 92
>sp|Q8C796|RCOR2_MOUSE REST corepressor 2 OS=Mus musculus GN=Rcor2 PE=2 SV=1
Length = 523
Score = 30.4 bits (67), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 162 KIGLTLQEVVPFCKQDYPG-YDNKRAQGYLSDAPFH-IGDSSTYKF 205
++G Q V+P CK + P Y NK +G L +P H + D+ K+
Sbjct: 47 RVGTNYQAVIPECKPESPARYSNKELKGMLVWSPNHCVSDAKLDKY 92
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,834,928
Number of Sequences: 539616
Number of extensions: 3419400
Number of successful extensions: 7760
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 7740
Number of HSP's gapped (non-prelim): 32
length of query: 213
length of database: 191,569,459
effective HSP length: 113
effective length of query: 100
effective length of database: 130,592,851
effective search space: 13059285100
effective search space used: 13059285100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)