Query 044601
Match_columns 213
No_of_seqs 107 out of 285
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 04:55:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044601.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044601hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10354 DUF2431: Domain of un 100.0 9.1E-68 2E-72 437.0 16.8 166 19-186 1-166 (166)
2 KOG4174 Uncharacterized conser 100.0 2.1E-61 4.5E-66 418.4 17.8 211 1-211 43-258 (282)
3 KOG4174 Uncharacterized conser 98.0 8.2E-07 1.8E-11 78.3 -1.5 135 26-183 1-135 (282)
4 TIGR00091 tRNA (guanine-N(7)-) 97.9 9.2E-05 2E-09 61.9 8.9 147 7-169 8-155 (194)
5 PF05175 MTS: Methyltransferas 97.5 0.0007 1.5E-08 55.4 8.8 112 14-147 31-142 (170)
6 PF13659 Methyltransf_26: Meth 97.5 0.00064 1.4E-08 51.1 7.7 115 16-146 2-116 (117)
7 PRK09489 rsmC 16S ribosomal RN 97.4 0.0022 4.8E-08 58.7 12.0 115 15-154 197-312 (342)
8 PRK14968 putative methyltransf 97.3 0.028 6.1E-07 45.3 15.7 141 13-170 22-171 (188)
9 PRK03612 spermidine synthase; 97.0 0.0057 1.2E-07 58.9 10.9 136 13-165 296-437 (521)
10 PRK00107 gidB 16S rRNA methylt 97.0 0.039 8.5E-07 46.4 14.5 130 13-176 44-173 (187)
11 PRK00121 trmB tRNA (guanine-N( 97.0 0.0064 1.4E-07 51.2 9.6 146 5-168 30-177 (202)
12 PRK15001 SAM-dependent 23S rib 97.0 0.015 3.3E-07 54.1 12.7 137 15-172 229-373 (378)
13 PF12847 Methyltransf_18: Meth 97.0 0.031 6.6E-07 41.4 12.1 111 14-145 1-111 (112)
14 TIGR03704 PrmC_rel_meth putati 97.0 0.04 8.7E-07 48.1 14.6 139 14-168 86-236 (251)
15 TIGR01177 conserved hypothetic 96.9 0.03 6.4E-07 50.6 13.5 135 11-170 179-313 (329)
16 PRK14902 16S rRNA methyltransf 96.9 0.036 7.8E-07 52.1 14.4 147 13-169 249-405 (444)
17 PRK14901 16S rRNA methyltransf 96.9 0.032 7E-07 52.4 14.1 149 13-168 251-409 (434)
18 PRK09328 N5-glutamine S-adenos 96.8 0.065 1.4E-06 46.3 14.8 142 13-170 107-260 (275)
19 TIGR02752 MenG_heptapren 2-hep 96.8 0.067 1.5E-06 45.1 14.3 109 12-145 43-151 (231)
20 smart00828 PKS_MT Methyltransf 96.8 0.058 1.3E-06 45.2 13.7 133 16-176 1-148 (224)
21 PRK14121 tRNA (guanine-N(7)-)- 96.8 0.015 3.2E-07 54.5 10.9 133 15-167 123-256 (390)
22 PRK14967 putative methyltransf 96.8 0.1 2.3E-06 44.2 15.2 142 12-170 34-182 (223)
23 TIGR03533 L3_gln_methyl protei 96.7 0.086 1.9E-06 46.9 15.0 135 14-165 121-267 (284)
24 PRK04457 spermidine synthase; 96.7 0.0091 2E-07 52.6 8.6 115 14-149 66-181 (262)
25 PRK11783 rlmL 23S rRNA m(2)G24 96.7 0.039 8.5E-07 55.1 14.0 157 6-179 530-688 (702)
26 PRK01581 speE spermidine synth 96.7 0.025 5.4E-07 52.8 11.5 146 13-175 149-300 (374)
27 TIGR00417 speE spermidine synt 96.6 0.013 2.8E-07 51.5 9.1 110 14-144 72-185 (270)
28 TIGR03534 RF_mod_PrmC protein- 96.6 0.059 1.3E-06 45.7 12.8 140 15-170 88-239 (251)
29 TIGR00446 nop2p NOL1/NOP2/sun 96.6 0.065 1.4E-06 47.0 13.0 144 13-167 70-223 (264)
30 PRK14903 16S rRNA methyltransf 96.6 0.096 2.1E-06 49.4 14.9 146 13-170 236-393 (431)
31 TIGR00537 hemK_rel_arch HemK-r 96.5 0.17 3.6E-06 41.3 14.5 138 13-170 18-163 (179)
32 TIGR00138 gidB 16S rRNA methyl 96.5 0.051 1.1E-06 45.2 11.2 132 14-176 42-173 (181)
33 PRK11873 arsM arsenite S-adeno 96.4 0.17 3.7E-06 43.9 14.8 140 11-175 74-233 (272)
34 PRK10901 16S rRNA methyltransf 96.4 0.11 2.4E-06 48.7 14.3 146 13-169 243-398 (427)
35 TIGR00438 rrmJ cell division p 96.3 0.064 1.4E-06 44.2 11.0 114 12-147 30-148 (188)
36 PRK14904 16S rRNA methyltransf 96.3 0.15 3.2E-06 48.1 14.7 143 13-169 249-403 (445)
37 PF02353 CMAS: Mycolic acid cy 96.3 0.032 6.9E-07 49.6 9.5 129 12-173 60-218 (273)
38 cd02440 AdoMet_MTases S-adenos 96.2 0.094 2E-06 36.2 10.0 103 17-144 1-103 (107)
39 PF02390 Methyltransf_4: Putat 96.2 0.014 3.1E-07 49.2 6.7 150 4-169 6-157 (195)
40 PRK14966 unknown domain/N5-glu 96.2 0.17 3.6E-06 48.1 14.1 145 12-171 249-404 (423)
41 PRK11188 rrmJ 23S rRNA methylt 96.1 0.11 2.4E-06 44.0 11.7 121 10-152 47-172 (209)
42 PRK00811 spermidine synthase; 96.1 0.1 2.2E-06 46.4 11.7 110 14-144 76-190 (283)
43 COG4123 Predicted O-methyltran 96.1 0.16 3.6E-06 44.9 12.7 150 8-172 39-194 (248)
44 COG0220 Predicted S-adenosylme 96.0 0.051 1.1E-06 47.3 9.2 139 5-162 37-180 (227)
45 PF01861 DUF43: Protein of unk 95.9 0.36 7.9E-06 42.6 13.8 132 14-174 44-181 (243)
46 TIGR00563 rsmB ribosomal RNA s 95.8 0.49 1.1E-05 44.3 15.5 143 13-167 237-392 (426)
47 PLN02366 spermidine synthase 95.8 0.12 2.6E-06 46.8 11.0 112 13-142 90-203 (308)
48 PLN02233 ubiquinone biosynthes 95.7 0.79 1.7E-05 40.1 15.5 110 13-146 72-183 (261)
49 PRK11805 N5-glutamine S-adenos 95.7 0.26 5.7E-06 44.4 12.7 135 16-167 135-281 (307)
50 PF13847 Methyltransf_31: Meth 95.7 0.15 3.1E-06 40.4 9.9 111 13-147 2-112 (152)
51 PRK15128 23S rRNA m(5)C1962 me 95.7 0.45 9.8E-06 44.6 14.5 159 7-180 213-378 (396)
52 TIGR02469 CbiT precorrin-6Y C5 95.6 0.45 9.8E-06 35.3 11.8 105 13-145 18-122 (124)
53 PRK01544 bifunctional N5-gluta 95.6 0.3 6.5E-06 47.1 13.3 140 15-170 139-291 (506)
54 PLN02244 tocopherol O-methyltr 95.5 0.68 1.5E-05 42.1 14.7 139 13-182 117-288 (340)
55 PRK00216 ubiE ubiquinone/menaq 95.4 0.74 1.6E-05 38.3 13.6 107 14-144 51-157 (239)
56 TIGR00080 pimt protein-L-isoas 95.2 0.46 1E-05 40.0 11.9 104 13-147 76-179 (215)
57 PRK00377 cbiT cobalt-precorrin 95.2 0.44 9.5E-06 39.7 11.6 133 12-173 38-171 (198)
58 COG1041 Predicted DNA modifica 95.2 0.36 7.9E-06 44.7 11.8 125 20-171 205-329 (347)
59 PLN02490 MPBQ/MSBQ methyltrans 95.1 0.77 1.7E-05 42.3 14.0 140 13-181 112-265 (340)
60 PRK05134 bifunctional 3-demeth 95.1 0.54 1.2E-05 39.6 12.1 128 14-171 48-204 (233)
61 PRK01544 bifunctional N5-gluta 95.1 0.15 3.2E-06 49.2 9.4 135 15-169 348-485 (506)
62 TIGR01934 MenG_MenH_UbiE ubiqu 95.0 1.1 2.4E-05 36.8 13.4 104 14-144 39-142 (223)
63 PRK08317 hypothetical protein; 94.8 0.76 1.7E-05 37.9 12.0 108 11-145 16-124 (241)
64 PF01564 Spermine_synth: Sperm 94.8 0.13 2.8E-06 45.0 7.6 146 14-180 76-227 (246)
65 PRK04266 fibrillarin; Provisio 94.7 2.5 5.4E-05 36.5 15.9 136 12-174 70-212 (226)
66 COG2813 RsmC 16S RNA G1207 met 94.7 0.47 1E-05 43.1 11.1 133 15-171 159-298 (300)
67 PRK11036 putative S-adenosyl-L 94.6 0.58 1.3E-05 40.4 11.3 104 13-145 43-149 (255)
68 PRK06922 hypothetical protein; 94.6 0.34 7.3E-06 48.5 10.6 119 9-145 413-537 (677)
69 TIGR00536 hemK_fam HemK family 94.5 0.86 1.9E-05 40.3 12.3 118 16-146 116-245 (284)
70 PTZ00098 phosphoethanolamine N 94.5 2.1 4.6E-05 37.4 14.6 105 12-145 50-156 (263)
71 PRK08287 cobalt-precorrin-6Y C 94.2 0.61 1.3E-05 38.2 10.1 129 13-174 30-158 (187)
72 PRK11933 yebU rRNA (cytosine-C 94.1 0.46 9.9E-06 45.6 10.2 123 29-163 128-261 (470)
73 PF02475 Met_10: Met-10+ like- 94.0 0.12 2.6E-06 44.1 5.5 102 11-142 98-199 (200)
74 COG0144 Sun tRNA and rRNA cyto 93.9 1.2 2.6E-05 41.0 12.4 105 64-170 199-315 (355)
75 PRK11207 tellurite resistance 93.8 1.8 3.9E-05 36.1 12.2 104 13-145 29-135 (197)
76 PRK13944 protein-L-isoaspartat 93.6 1 2.3E-05 37.7 10.6 105 13-147 71-175 (205)
77 PF01170 UPF0020: Putative RNA 93.0 1.2 2.6E-05 36.9 9.9 110 20-146 36-151 (179)
78 PRK15451 tRNA cmo(5)U34 methyl 93.0 1.1 2.5E-05 38.6 10.1 109 13-145 55-164 (247)
79 TIGR01983 UbiG ubiquinone bios 93.0 2.1 4.5E-05 35.6 11.4 136 14-183 45-211 (224)
80 PRK11705 cyclopropane fatty ac 92.4 1.7 3.7E-05 40.4 11.0 100 13-145 166-267 (383)
81 PF13649 Methyltransf_25: Meth 92.2 0.46 1E-05 34.9 5.7 98 18-139 1-101 (101)
82 TIGR00740 methyltransferase, p 92.2 2.5 5.4E-05 35.9 11.0 107 13-144 52-160 (239)
83 PLN02336 phosphoethanolamine N 92.1 2.4 5.2E-05 39.9 11.7 131 13-174 265-416 (475)
84 TIGR00479 rumA 23S rRNA (uraci 92.0 1.7 3.8E-05 40.5 10.6 137 13-182 291-428 (431)
85 PLN02823 spermine synthase 91.9 0.81 1.8E-05 42.0 8.1 115 14-144 103-219 (336)
86 PF01135 PCMT: Protein-L-isoas 91.9 0.67 1.4E-05 39.7 7.1 106 12-148 70-175 (209)
87 COG2230 Cfa Cyclopropane fatty 91.3 2.8 6E-05 37.9 10.6 137 11-176 69-227 (283)
88 PF08241 Methyltransf_11: Meth 91.2 1.6 3.4E-05 30.4 7.4 95 19-143 1-95 (95)
89 TIGR00477 tehB tellurite resis 91.1 5.2 0.00011 33.2 11.6 101 14-143 30-131 (195)
90 PRK00517 prmA ribosomal protei 90.9 9.8 0.00021 32.8 13.8 120 13-171 118-237 (250)
91 TIGR02716 C20_methyl_CrtF C-20 90.7 4.8 0.0001 35.6 11.6 105 12-144 147-253 (306)
92 PTZ00146 fibrillarin; Provisio 90.3 14 0.0003 33.6 15.7 135 11-175 129-274 (293)
93 KOG1122 tRNA and rRNA cytosine 90.3 2.8 6.1E-05 40.0 10.1 106 67-176 286-404 (460)
94 PRK14103 trans-aconitate 2-met 90.0 3.9 8.4E-05 35.2 10.2 99 13-145 28-126 (255)
95 KOG2904 Predicted methyltransf 90.0 5.5 0.00012 36.4 11.2 122 16-146 150-286 (328)
96 PF08704 GCD14: tRNA methyltra 89.5 2.7 5.9E-05 37.0 8.9 107 13-145 39-146 (247)
97 PRK13943 protein-L-isoaspartat 89.5 5.8 0.00013 36.2 11.3 104 12-146 78-181 (322)
98 PHA03411 putative methyltransf 89.4 8.2 0.00018 34.8 12.0 136 15-170 65-212 (279)
99 PRK13942 protein-L-isoaspartat 89.1 11 0.00023 31.9 12.0 103 13-146 75-177 (212)
100 PRK13168 rumA 23S rRNA m(5)U19 89.1 7.6 0.00016 36.6 12.2 138 13-183 296-433 (443)
101 PRK00312 pcm protein-L-isoaspa 88.8 7.8 0.00017 32.3 10.9 100 13-146 77-176 (212)
102 PRK01683 trans-aconitate 2-met 88.8 6.8 0.00015 33.5 10.8 102 13-146 30-131 (258)
103 PRK12335 tellurite resistance 88.1 7 0.00015 34.5 10.6 101 14-143 120-221 (287)
104 PRK00536 speE spermidine synth 88.0 6.1 0.00013 35.2 10.1 99 14-147 72-172 (262)
105 COG2890 HemK Methylase of poly 87.1 18 0.00039 32.2 12.7 137 17-170 113-261 (280)
106 TIGR00406 prmA ribosomal prote 87.1 16 0.00035 32.3 12.4 98 14-145 159-259 (288)
107 COG2519 GCD14 tRNA(1-methylade 87.0 9.1 0.0002 34.1 10.5 103 13-146 93-196 (256)
108 TIGR02021 BchM-ChlM magnesium 86.8 17 0.00037 30.3 12.1 131 13-173 54-207 (219)
109 COG0421 SpeE Spermidine syntha 86.7 3.3 7.1E-05 37.3 7.7 109 16-144 78-189 (282)
110 PRK03522 rumB 23S rRNA methylu 86.6 21 0.00045 32.0 12.9 132 15-183 174-305 (315)
111 PF01189 Nol1_Nop2_Fmu: NOL1/N 86.5 1.9 4.1E-05 38.4 6.1 133 28-169 99-245 (283)
112 PRK06940 short chain dehydroge 86.4 11 0.00024 32.5 10.8 77 16-102 3-85 (275)
113 TIGR02072 BioC biotin biosynth 86.0 7.4 0.00016 32.1 9.1 101 15-145 35-135 (240)
114 PLN02396 hexaprenyldihydroxybe 85.8 14 0.00031 33.6 11.6 130 14-173 131-290 (322)
115 PF10672 Methyltrans_SAM: S-ad 85.7 0.93 2E-05 40.8 3.7 154 6-181 115-274 (286)
116 TIGR02085 meth_trns_rumB 23S r 84.1 7.3 0.00016 35.9 9.0 132 15-183 234-365 (374)
117 PF13489 Methyltransf_23: Meth 83.9 5.4 0.00012 30.7 7.0 120 12-169 20-160 (161)
118 COG1092 Predicted SAM-dependen 83.7 9.6 0.00021 35.9 9.6 160 6-183 209-378 (393)
119 COG4262 Predicted spermidine s 83.7 15 0.00034 34.9 10.8 130 15-166 290-430 (508)
120 TIGR00452 methyltransferase, p 83.6 14 0.0003 33.7 10.4 130 14-173 121-274 (314)
121 COG2520 Predicted methyltransf 83.0 3.7 8.1E-05 38.0 6.5 101 14-146 188-290 (341)
122 PLN02336 phosphoethanolamine N 82.6 16 0.00034 34.4 10.7 105 14-144 37-141 (475)
123 PLN02781 Probable caffeoyl-CoA 82.4 4.7 0.0001 34.8 6.6 110 10-143 64-176 (234)
124 PRK13699 putative methylase; P 82.1 6 0.00013 34.1 7.1 93 73-176 3-100 (227)
125 KOG3191 Predicted N6-DNA-methy 82.1 27 0.00058 30.1 10.8 120 18-150 47-174 (209)
126 PRK09880 L-idonate 5-dehydroge 81.8 16 0.00035 32.4 10.1 96 14-144 169-265 (343)
127 PRK10909 rsmD 16S rRNA m(2)G96 81.8 20 0.00043 30.3 10.1 112 9-147 48-161 (199)
128 PRK10309 galactitol-1-phosphat 81.4 11 0.00023 33.4 8.7 100 12-144 158-259 (347)
129 PRK07402 precorrin-6B methylas 81.3 28 0.00062 28.5 10.8 106 12-146 38-143 (196)
130 TIGR03840 TMPT_Se_Te thiopurin 81.0 33 0.00073 29.1 12.6 112 13-146 33-154 (213)
131 PF08468 MTS_N: Methyltransfer 80.0 5.5 0.00012 32.6 5.8 92 14-144 12-104 (155)
132 PF00106 adh_short: short chai 79.7 26 0.00056 27.1 10.4 83 17-107 2-94 (167)
133 COG2226 UbiE Methylase involve 79.3 25 0.00054 30.9 10.1 110 14-152 51-162 (238)
134 PRK15068 tRNA mo(5)U34 methylt 78.7 51 0.0011 29.8 12.4 134 14-175 122-277 (322)
135 TIGR00308 TRM1 tRNA(guanine-26 78.5 8.1 0.00018 36.0 7.2 104 17-148 47-150 (374)
136 COG2265 TrmA SAM-dependent met 78.4 26 0.00056 33.4 10.7 123 19-183 300-429 (432)
137 PRK09489 rsmC 16S ribosomal RN 77.9 15 0.00033 33.6 8.7 94 14-146 19-113 (342)
138 PRK07580 Mg-protoporphyrin IX 77.7 39 0.00084 27.9 10.6 129 13-176 62-218 (230)
139 PF05148 Methyltransf_8: Hypot 75.8 4.5 9.7E-05 35.3 4.3 74 80-170 110-183 (219)
140 PRK02842 light-independent pro 75.7 3.8 8.3E-05 38.4 4.3 65 12-84 287-353 (427)
141 PF01209 Ubie_methyltran: ubiE 75.1 20 0.00043 31.0 8.2 111 12-147 45-155 (233)
142 PF01522 Polysacc_deac_1: Poly 74.8 9.4 0.0002 28.3 5.5 112 17-167 8-122 (123)
143 PLN02476 O-methyltransferase 74.4 14 0.0003 33.2 7.3 113 8-144 112-227 (278)
144 cd00550 ArsA_ATPase Oxyanion-t 74.3 10 0.00022 33.0 6.3 87 14-106 27-137 (254)
145 TIGR01279 DPOR_bchN light-inde 74.0 4.6 9.9E-05 37.7 4.3 66 12-85 271-337 (407)
146 COG3963 Phospholipid N-methylt 73.3 16 0.00034 31.2 6.9 111 11-148 45-158 (194)
147 COG2518 Pcm Protein-L-isoaspar 73.0 19 0.00042 31.1 7.6 76 12-100 70-145 (209)
148 COG2227 UbiG 2-polyprenyl-3-me 72.1 37 0.00079 30.1 9.2 102 14-144 59-160 (243)
149 PRK06128 oxidoreductase; Provi 72.1 66 0.0014 27.9 11.3 80 15-101 55-142 (300)
150 PRK06701 short chain dehydroge 71.7 61 0.0013 28.2 10.7 79 15-101 46-132 (290)
151 PRK10258 biotin biosynthesis p 71.0 39 0.00084 28.7 9.1 99 14-145 42-140 (251)
152 TIGR02987 met_A_Alw26 type II 70.6 47 0.001 31.9 10.5 129 16-148 33-199 (524)
153 PRK11727 23S rRNA mA1618 methy 70.4 34 0.00073 31.3 9.0 86 14-106 114-202 (321)
154 KOG1562 Spermidine synthase [A 70.3 13 0.00027 34.3 6.0 128 13-162 120-248 (337)
155 PLN03075 nicotianamine synthas 69.5 78 0.0017 28.7 11.0 112 14-148 123-236 (296)
156 PLN02232 ubiquinone biosynthes 68.7 17 0.00037 29.2 6.1 57 71-147 27-83 (160)
157 PHA03412 putative methyltransf 68.6 41 0.00089 29.7 8.8 107 15-141 50-158 (241)
158 cd08294 leukotriene_B4_DH_like 68.0 37 0.00081 29.3 8.5 52 11-76 140-193 (329)
159 PF08659 KR: KR domain; Inter 67.7 30 0.00065 28.1 7.4 63 17-86 2-68 (181)
160 PRK04338 N(2),N(2)-dimethylgua 67.2 60 0.0013 30.3 10.1 103 16-148 59-161 (382)
161 smart00138 MeTrc Methyltransfe 66.9 64 0.0014 28.2 9.8 120 13-149 98-246 (264)
162 PRK06202 hypothetical protein; 66.4 78 0.0017 26.6 12.2 77 13-102 59-138 (232)
163 cd01979 Pchlide_reductase_N Pc 66.2 8.1 0.00018 35.8 4.1 29 14-45 275-305 (396)
164 PRK11088 rrmA 23S rRNA methylt 66.2 78 0.0017 27.4 10.2 107 14-158 85-192 (272)
165 PRK05031 tRNA (uracil-5-)-meth 65.9 29 0.00063 31.9 7.7 130 16-183 208-352 (362)
166 PRK13656 trans-2-enoyl-CoA red 65.6 26 0.00056 33.2 7.3 88 13-101 39-139 (398)
167 PF10294 Methyltransf_16: Puta 65.6 27 0.0006 28.5 6.8 118 11-148 42-159 (173)
168 cd00316 Oxidoreductase_nitroge 64.8 18 0.00039 32.9 6.1 66 12-85 276-342 (399)
169 PF00070 Pyr_redox: Pyridine n 64.5 9.1 0.0002 26.8 3.3 67 17-87 1-70 (80)
170 PRK07985 oxidoreductase; Provi 64.0 99 0.0021 26.9 10.9 81 15-102 49-137 (294)
171 PF00891 Methyltransf_2: O-met 62.8 47 0.001 28.0 8.0 100 11-144 97-198 (241)
172 COG0003 ArsA Predicted ATPase 62.1 13 0.00028 34.1 4.5 89 16-106 31-138 (322)
173 PRK08340 glucose-1-dehydrogena 60.9 31 0.00068 29.0 6.5 77 16-101 1-84 (259)
174 KOG1270 Methyltransferases [Co 60.7 54 0.0012 29.7 8.1 106 15-145 90-195 (282)
175 TIGR02081 metW methionine bios 60.6 92 0.002 25.4 12.2 72 13-102 12-84 (194)
176 COG4122 Predicted O-methyltran 60.4 40 0.00086 29.3 7.1 110 9-144 54-165 (219)
177 PRK05599 hypothetical protein; 59.7 44 0.00095 28.1 7.2 76 17-101 2-85 (246)
178 PRK11524 putative methyltransf 59.4 19 0.00041 31.8 5.1 94 74-174 10-105 (284)
179 TIGR02143 trmA_only tRNA (urac 59.3 78 0.0017 29.0 9.2 132 16-183 199-343 (353)
180 PRK07806 short chain dehydroge 59.2 1E+02 0.0022 25.4 9.5 121 15-145 6-135 (248)
181 PRK12744 short chain dehydroge 57.0 1.2E+02 0.0025 25.4 11.2 81 15-100 8-96 (257)
182 PLN02672 methionine S-methyltr 56.9 2.8E+02 0.0061 29.8 13.7 143 15-170 119-301 (1082)
183 PF03848 TehB: Tellurite resis 56.8 68 0.0015 27.2 7.8 101 12-143 28-131 (192)
184 PRK06953 short chain dehydroge 56.7 1.1E+02 0.0023 25.0 10.6 74 16-103 2-80 (222)
185 KOG3045 Predicted RNA methylas 56.2 37 0.00081 30.9 6.3 65 90-170 225-289 (325)
186 PF08242 Methyltransf_12: Meth 55.3 19 0.00041 25.8 3.7 97 21-141 3-99 (99)
187 KOG3889 Predicted gamma-butyro 55.3 33 0.00072 31.4 5.8 114 39-183 217-349 (371)
188 PRK12481 2-deoxy-D-gluconate 3 54.8 51 0.0011 27.7 6.8 76 14-100 7-90 (251)
189 TIGR03438 probable methyltrans 54.2 1.6E+02 0.0034 26.1 11.0 119 12-148 61-180 (301)
190 PF02254 TrkA_N: TrkA-N domain 53.1 37 0.00081 25.0 5.1 70 18-102 1-71 (116)
191 KOG4300 Predicted methyltransf 53.0 46 0.00099 29.4 6.1 95 40-158 98-195 (252)
192 PRK07523 gluconate 5-dehydroge 52.6 64 0.0014 26.9 7.0 79 14-101 9-95 (255)
193 KOG2198 tRNA cytosine-5-methyl 52.6 1.8E+02 0.0038 27.5 10.3 85 71-157 209-308 (375)
194 PLN02589 caffeoyl-CoA O-methyl 52.3 86 0.0019 27.5 8.0 108 11-143 76-188 (247)
195 PF01596 Methyltransf_3: O-met 52.3 27 0.00059 29.7 4.7 108 13-144 44-154 (205)
196 PRK14106 murD UDP-N-acetylmura 51.7 78 0.0017 29.3 8.0 74 14-104 4-78 (450)
197 TIGR02825 B4_12hDH leukotriene 51.4 1.1E+02 0.0024 26.6 8.6 97 11-143 135-235 (325)
198 TIGR00824 EIIA-man PTS system, 51.3 37 0.0008 26.1 4.9 57 17-78 3-67 (116)
199 PF03610 EIIA-man: PTS system 50.6 28 0.00061 26.3 4.1 56 17-77 1-65 (116)
200 PRK07454 short chain dehydroge 50.6 61 0.0013 26.7 6.5 79 13-100 4-90 (241)
201 COG2521 Predicted archaeal met 50.2 69 0.0015 28.8 6.9 85 72-171 187-276 (287)
202 PRK12939 short chain dehydroge 49.6 57 0.0012 26.8 6.2 79 14-101 6-92 (250)
203 COG2099 CobK Precorrin-6x redu 49.6 60 0.0013 29.1 6.5 65 15-83 2-76 (257)
204 TIGR00095 RNA methyltransferas 49.2 1.5E+02 0.0033 24.5 9.4 120 8-148 43-162 (189)
205 cd08242 MDR_like Medium chain 48.7 89 0.0019 26.9 7.5 69 10-99 151-220 (319)
206 cd02008 TPP_IOR_alpha Thiamine 48.4 23 0.0005 28.9 3.5 37 14-50 69-107 (178)
207 PRK09496 trkA potassium transp 48.2 34 0.00073 31.6 5.0 74 14-102 230-306 (453)
208 PRK08936 glucose-1-dehydrogena 47.3 1E+02 0.0022 25.8 7.5 80 14-101 6-93 (261)
209 PF00107 ADH_zinc_N: Zinc-bind 47.2 37 0.00081 25.3 4.3 87 27-148 4-92 (130)
210 PRK09496 trkA potassium transp 46.4 69 0.0015 29.5 6.8 30 16-47 1-31 (453)
211 PRK12859 3-ketoacyl-(acyl-carr 46.4 63 0.0014 27.2 6.1 89 14-102 5-105 (256)
212 PRK06079 enoyl-(acyl carrier p 45.8 1.8E+02 0.0039 24.4 10.5 78 14-101 6-91 (252)
213 PRK13530 arsenate reductase; P 45.8 81 0.0018 24.7 6.2 54 15-74 3-59 (133)
214 cd08230 glucose_DH Glucose deh 45.4 91 0.002 27.7 7.2 94 13-143 171-267 (355)
215 TIGR01861 ANFD nitrogenase iro 45.4 32 0.00069 33.5 4.5 37 11-47 324-362 (513)
216 cd00006 PTS_IIA_man PTS_IIA, P 44.6 62 0.0014 24.7 5.3 57 17-78 2-66 (122)
217 PRK06505 enoyl-(acyl carrier p 44.3 2E+02 0.0044 24.6 9.9 76 14-101 6-93 (271)
218 PRK10669 putative cation:proto 44.3 91 0.002 30.1 7.5 73 15-102 417-490 (558)
219 PRK08085 gluconate 5-dehydroge 44.2 1.1E+02 0.0023 25.5 7.1 80 14-102 8-95 (254)
220 cd02006 TPP_Gcl Thiamine pyrop 44.1 23 0.00049 29.5 2.9 33 15-49 76-111 (202)
221 KOG1540 Ubiquinone biosynthesi 44.0 2.4E+02 0.0051 25.7 9.4 113 8-147 95-216 (296)
222 KOG1661 Protein-L-isoaspartate 43.9 2.1E+02 0.0046 25.3 8.8 107 11-146 79-194 (237)
223 PRK12824 acetoacetyl-CoA reduc 43.9 97 0.0021 25.3 6.7 78 16-101 3-88 (245)
224 PF01936 NYN: NYN domain; Int 43.6 20 0.00044 27.3 2.4 30 15-44 97-126 (146)
225 PRK06172 short chain dehydroge 43.5 93 0.002 25.8 6.6 79 15-102 7-93 (253)
226 CHL00076 chlB photochlorophyll 43.1 83 0.0018 30.5 7.0 37 12-48 302-340 (513)
227 KOG4549 Magnesium-dependent ph 42.9 23 0.00051 28.7 2.6 28 50-77 39-66 (144)
228 KOG1271 Methyltransferases [Ge 42.6 2.2E+02 0.0047 24.8 8.6 133 15-173 68-206 (227)
229 smart00650 rADc Ribosomal RNA 42.5 1.4E+02 0.0031 23.7 7.3 76 13-103 12-87 (169)
230 PRK07109 short chain dehydroge 42.5 92 0.002 27.9 6.8 78 14-100 7-92 (334)
231 PRK06603 enoyl-(acyl carrier p 42.5 2.1E+02 0.0045 24.2 10.7 79 14-101 7-94 (260)
232 PF01555 N6_N4_Mtase: DNA meth 42.4 1.8E+02 0.0039 23.4 8.5 60 115-176 27-87 (231)
233 cd01981 Pchlide_reductase_B Pc 41.4 80 0.0017 29.5 6.4 29 11-39 297-327 (430)
234 TIGR01316 gltA glutamate synth 41.3 62 0.0013 30.4 5.7 65 14-84 271-336 (449)
235 PRK07791 short chain dehydroge 40.7 1.2E+02 0.0026 26.2 7.1 86 14-100 5-99 (286)
236 PRK05867 short chain dehydroge 40.5 1E+02 0.0022 25.7 6.4 79 14-101 8-94 (253)
237 PRK08594 enoyl-(acyl carrier p 40.4 2.3E+02 0.0049 24.0 10.7 77 14-100 6-94 (257)
238 TIGR03385 CoA_CoA_reduc CoA-di 40.0 1.1E+02 0.0023 28.1 7.0 83 14-100 136-228 (427)
239 cd08274 MDR9 Medium chain dehy 39.9 1.1E+02 0.0024 26.6 6.8 34 11-46 174-209 (350)
240 PRK06194 hypothetical protein; 39.9 88 0.0019 26.6 6.0 80 15-103 6-93 (287)
241 PRK06949 short chain dehydroge 39.6 95 0.0021 25.7 6.1 81 14-103 8-96 (258)
242 PF06962 rRNA_methylase: Putat 38.8 1.2E+02 0.0025 24.6 6.2 79 63-150 15-97 (140)
243 PRK08415 enoyl-(acyl carrier p 38.6 99 0.0021 26.7 6.2 75 14-100 4-90 (274)
244 cd08254 hydroxyacyl_CoA_DH 6-h 38.4 97 0.0021 26.6 6.1 37 10-48 161-198 (338)
245 PRK08159 enoyl-(acyl carrier p 38.3 2.6E+02 0.0055 24.0 10.7 77 14-101 9-96 (272)
246 KOG2380 Prephenate dehydrogena 38.0 73 0.0016 30.2 5.4 77 7-85 44-123 (480)
247 PRK12748 3-ketoacyl-(acyl-carr 37.9 1.5E+02 0.0031 24.8 7.0 87 15-101 5-103 (256)
248 cd08301 alcohol_DH_plants Plan 37.4 1.5E+02 0.0032 26.5 7.3 53 11-76 184-237 (369)
249 PRK07062 short chain dehydroge 37.3 1.5E+02 0.0033 24.8 7.0 79 14-101 7-95 (265)
250 PRK05565 fabG 3-ketoacyl-(acyl 37.3 1E+02 0.0022 25.2 5.8 81 15-104 5-94 (247)
251 PLN02253 xanthoxin dehydrogena 37.2 1E+02 0.0022 26.1 6.0 78 15-101 18-102 (280)
252 PF14584 DUF4446: Protein of u 37.0 4.6 9.9E-05 33.1 -2.3 27 24-52 96-122 (151)
253 PRK07814 short chain dehydroge 36.3 1.1E+02 0.0024 25.7 6.1 76 14-100 9-94 (263)
254 PRK13255 thiopurine S-methyltr 36.0 2.7E+02 0.0059 23.6 11.4 112 13-146 36-157 (218)
255 cd06167 LabA_like LabA_like pr 35.9 58 0.0013 25.2 3.9 31 15-45 101-131 (149)
256 PF03291 Pox_MCEL: mRNA cappin 35.9 31 0.00066 31.6 2.6 45 91-147 143-188 (331)
257 TIGR00692 tdh L-threonine 3-de 35.9 1.1E+02 0.0025 26.7 6.3 33 13-46 160-193 (340)
258 TIGR03587 Pse_Me-ase pseudamin 35.8 2.6E+02 0.0057 23.3 14.2 153 9-208 38-204 (204)
259 PRK12831 putative oxidoreducta 35.8 96 0.0021 29.3 6.1 66 13-84 279-345 (464)
260 PRK07831 short chain dehydroge 35.6 1.3E+02 0.0027 25.3 6.3 81 14-102 16-106 (262)
261 PRK05650 short chain dehydroge 35.6 1.2E+02 0.0026 25.6 6.1 78 16-102 1-86 (270)
262 COG0275 Predicted S-adenosylme 35.5 34 0.00074 31.4 2.8 35 112-147 210-246 (314)
263 cd02003 TPP_IolD Thiamine pyro 35.4 40 0.00087 28.2 3.1 33 15-49 67-102 (205)
264 KOG1198 Zinc-binding oxidoredu 35.4 1.9E+02 0.004 26.6 7.7 47 11-58 154-202 (347)
265 PRK07904 short chain dehydroge 35.3 1.6E+02 0.0035 24.8 6.9 85 13-105 6-99 (253)
266 PLN02657 3,8-divinyl protochlo 35.3 2.4E+02 0.0052 25.9 8.5 88 8-102 53-145 (390)
267 cd01965 Nitrogenase_MoFe_beta_ 35.2 92 0.002 29.0 5.8 69 12-85 296-365 (428)
268 PF13578 Methyltransf_24: Meth 35.1 16 0.00034 26.7 0.5 37 91-143 67-103 (106)
269 PRK06947 glucose-1-dehydrogena 35.0 1.9E+02 0.0041 23.8 7.2 78 16-101 3-88 (248)
270 PRK12769 putative oxidoreducta 34.9 95 0.0021 30.7 6.1 66 14-84 467-533 (654)
271 PRK04148 hypothetical protein; 34.8 1.7E+02 0.0036 23.5 6.4 31 15-49 17-49 (134)
272 TIGR02689 ars_reduc_gluta arse 34.7 1.3E+02 0.0028 23.1 5.7 75 16-100 1-78 (126)
273 PRK07710 acetolactate synthase 34.6 41 0.00088 32.6 3.4 34 14-49 442-478 (571)
274 PRK00050 16S rRNA m(4)C1402 me 34.6 55 0.0012 29.6 4.0 33 112-145 202-236 (296)
275 PRK06139 short chain dehydroge 34.5 1.1E+02 0.0023 27.5 5.9 79 14-101 6-92 (330)
276 PRK05866 short chain dehydroge 34.3 1.3E+02 0.0028 26.2 6.2 78 14-100 39-124 (293)
277 PLN02827 Alcohol dehydrogenase 34.3 1.8E+02 0.0039 26.3 7.4 38 10-48 189-227 (378)
278 KOG2741 Dimeric dihydrodiol de 34.1 1.4E+02 0.003 27.9 6.6 89 14-105 31-166 (351)
279 PRK06198 short chain dehydroge 34.0 1.2E+02 0.0027 25.1 5.9 78 14-100 5-91 (260)
280 KOG1562 Spermidine synthase [A 34.0 29 0.00064 32.0 2.1 84 11-100 171-258 (337)
281 PRK08628 short chain dehydroge 34.0 2.7E+02 0.0059 23.0 11.1 78 15-102 7-92 (258)
282 PRK06114 short chain dehydroge 33.7 1.8E+02 0.0038 24.3 6.8 81 14-102 7-95 (254)
283 PRK03562 glutathione-regulated 33.4 1.7E+02 0.0036 29.1 7.5 55 15-84 400-455 (621)
284 TIGR00006 S-adenosyl-methyltra 33.4 59 0.0013 29.6 4.0 34 112-146 206-241 (305)
285 COG0027 PurT Formate-dependent 33.3 1E+02 0.0022 28.9 5.5 71 12-84 9-111 (394)
286 PRK15001 SAM-dependent 23S rib 33.3 2.9E+02 0.0063 25.8 8.7 40 92-147 105-144 (378)
287 PRK14896 ksgA 16S ribosomal RN 33.2 2.4E+02 0.0051 24.4 7.7 76 13-105 28-103 (258)
288 PLN00016 RNA-binding protein; 33.1 1.3E+02 0.0028 27.2 6.2 79 15-100 52-137 (378)
289 PTZ00318 NADH dehydrogenase-li 32.8 1.1E+02 0.0025 28.2 5.9 83 16-100 174-275 (424)
290 cd02015 TPP_AHAS Thiamine pyro 32.4 47 0.001 27.1 3.0 33 15-49 69-104 (186)
291 PRK09291 short chain dehydroge 32.4 2E+02 0.0042 23.8 6.9 76 16-100 3-80 (257)
292 PF03602 Cons_hypoth95: Conser 32.2 72 0.0016 26.5 4.1 105 21-148 51-156 (183)
293 PRK08703 short chain dehydroge 32.0 2.1E+02 0.0045 23.5 6.9 78 15-101 6-95 (239)
294 TIGR03169 Nterm_to_SelD pyridi 32.0 1.7E+02 0.0036 26.1 6.7 86 14-102 144-240 (364)
295 PRK03659 glutathione-regulated 31.9 1.6E+02 0.0035 29.0 7.1 74 15-103 400-474 (601)
296 cd08234 threonine_DH_like L-th 31.9 1.9E+02 0.0041 24.9 6.9 38 10-48 155-193 (334)
297 PRK12828 short chain dehydroge 31.8 1.6E+02 0.0035 23.7 6.2 80 14-103 6-92 (239)
298 PRK12770 putative glutamate sy 31.6 1.7E+02 0.0038 26.1 6.8 65 15-84 172-237 (352)
299 PRK07074 short chain dehydroge 31.6 1.4E+02 0.003 24.9 5.8 77 15-101 2-85 (257)
300 TIGR00061 L21 ribosomal protei 31.6 20 0.00043 27.5 0.6 31 16-49 35-65 (101)
301 PRK08213 gluconate 5-dehydroge 31.3 2E+02 0.0043 23.9 6.8 79 15-102 12-98 (259)
302 cd08239 THR_DH_like L-threonin 31.1 1.6E+02 0.0035 25.7 6.4 51 12-75 161-212 (339)
303 PRK12745 3-ketoacyl-(acyl-carr 30.3 2.1E+02 0.0045 23.6 6.6 78 16-101 3-88 (256)
304 PRK07048 serine/threonine dehy 30.2 1.7E+02 0.0036 26.1 6.4 50 16-76 73-123 (321)
305 PRK01438 murD UDP-N-acetylmura 29.9 3.2E+02 0.007 25.5 8.6 58 15-81 16-74 (480)
306 PRK11749 dihydropyrimidine deh 29.7 1.2E+02 0.0026 28.3 5.6 66 14-84 272-338 (457)
307 KOG3420 Predicted RNA methylas 29.7 2.9E+02 0.0062 23.3 7.1 73 19-107 55-127 (185)
308 PRK07576 short chain dehydroge 29.7 3.4E+02 0.0074 22.8 11.2 79 14-101 8-94 (264)
309 PF03059 NAS: Nicotianamine sy 29.6 1.6E+02 0.0035 26.5 6.1 111 15-148 121-233 (276)
310 PF03853 YjeF_N: YjeF-related 29.6 86 0.0019 25.5 4.1 78 14-98 25-104 (169)
311 cd06448 L-Ser-dehyd Serine deh 29.5 2E+02 0.0043 25.8 6.7 54 14-79 50-104 (316)
312 PRK06196 oxidoreductase; Provi 29.5 1.3E+02 0.0028 26.3 5.5 76 15-102 26-108 (315)
313 PRK08303 short chain dehydroge 29.5 3.9E+02 0.0085 23.5 10.7 86 14-101 7-103 (305)
314 PRK06483 dihydromonapterin red 29.5 2.1E+02 0.0046 23.4 6.6 74 15-101 2-82 (236)
315 PLN02740 Alcohol dehydrogenase 29.4 2.6E+02 0.0057 25.2 7.6 54 10-76 194-248 (381)
316 cd08261 Zn_ADH7 Alcohol dehydr 29.4 1.5E+02 0.0033 25.7 5.9 37 10-48 155-192 (337)
317 COG0116 Predicted N6-adenine-s 29.4 2.5E+02 0.0054 26.6 7.5 74 60-144 270-343 (381)
318 PF02384 N6_Mtase: N-6 DNA Met 29.3 96 0.0021 27.2 4.6 150 15-180 47-220 (311)
319 PRK05396 tdh L-threonine 3-deh 29.0 1.6E+02 0.0035 25.7 6.1 52 13-77 162-214 (341)
320 PRK09242 tropinone reductase; 28.9 2.3E+02 0.005 23.5 6.8 77 14-101 8-96 (257)
321 cd08243 quinone_oxidoreductase 28.9 3.5E+02 0.0076 22.7 9.3 37 11-49 139-177 (320)
322 PRK05993 short chain dehydroge 28.8 1.7E+02 0.0037 24.9 6.0 72 15-100 4-83 (277)
323 PF06080 DUF938: Protein of un 28.7 1.1E+02 0.0023 26.4 4.6 139 13-173 23-193 (204)
324 CHL00073 chlN photochlorophyll 28.7 1.2E+02 0.0026 29.3 5.4 37 13-49 312-349 (457)
325 cd01561 CBS_like CBS_like: Thi 28.5 2.2E+02 0.0047 24.9 6.7 50 15-75 53-103 (291)
326 cd05188 MDR Medium chain reduc 28.5 3.2E+02 0.007 22.2 11.1 33 12-48 132-167 (271)
327 COG2242 CobL Precorrin-6B meth 28.3 3.7E+02 0.0081 22.9 12.0 106 13-148 33-138 (187)
328 COG0021 TktA Transketolase [Ca 28.3 1.1E+02 0.0024 30.9 5.3 65 15-84 149-224 (663)
329 PRK07533 enoyl-(acyl carrier p 28.3 3.6E+02 0.0078 22.6 10.3 76 14-101 9-96 (258)
330 PRK07775 short chain dehydroge 28.3 2E+02 0.0044 24.4 6.4 79 13-100 8-94 (274)
331 TIGR01292 TRX_reduct thioredox 28.2 1.6E+02 0.0036 24.8 5.8 64 14-85 140-205 (300)
332 PRK06182 short chain dehydroge 28.0 3.7E+02 0.0079 22.6 10.1 75 15-103 3-84 (273)
333 cd02013 TPP_Xsc_like Thiamine 27.8 72 0.0016 26.4 3.4 32 16-49 73-107 (196)
334 PRK05786 fabG 3-ketoacyl-(acyl 27.8 3.3E+02 0.0072 22.1 11.1 121 15-145 5-135 (238)
335 PRK07063 short chain dehydroge 27.8 2.1E+02 0.0046 23.8 6.3 78 15-101 7-94 (260)
336 COG3579 PepC Aminopeptidase C 27.7 71 0.0015 30.1 3.5 60 64-127 305-365 (444)
337 PRK12429 3-hydroxybutyrate deh 27.7 2.2E+02 0.0049 23.3 6.4 79 15-102 4-90 (258)
338 cd02014 TPP_POX Thiamine pyrop 27.5 42 0.0009 27.3 1.9 34 14-49 69-105 (178)
339 TIGR01832 kduD 2-deoxy-D-gluco 27.4 3.5E+02 0.0075 22.2 10.9 76 14-100 4-87 (248)
340 KOG2915 tRNA(1-methyladenosine 27.3 4.9E+02 0.011 23.9 8.9 81 13-104 104-188 (314)
341 PRK07677 short chain dehydroge 27.0 2.4E+02 0.0052 23.4 6.5 78 15-101 1-86 (252)
342 PF02775 TPP_enzyme_C: Thiamin 27.0 34 0.00074 26.9 1.2 36 14-49 46-82 (153)
343 PRK12810 gltD glutamate syntha 26.7 85 0.0018 29.6 4.0 68 14-84 280-356 (471)
344 PRK06125 short chain dehydroge 26.6 2.9E+02 0.0062 23.0 7.0 79 14-101 6-89 (259)
345 cd05285 sorbitol_DH Sorbitol d 26.6 2.3E+02 0.0049 24.8 6.5 37 10-48 158-196 (343)
346 PRK10126 tyrosine phosphatase; 26.4 1.2E+02 0.0027 23.9 4.4 76 16-99 3-81 (147)
347 cd08253 zeta_crystallin Zeta-c 26.3 2.9E+02 0.0062 23.1 6.9 37 10-48 140-178 (325)
348 PRK07890 short chain dehydroge 26.1 3.7E+02 0.008 22.1 10.7 80 13-101 3-90 (258)
349 COG1432 Uncharacterized conser 26.1 1.5E+02 0.0032 24.6 4.9 29 16-44 112-141 (181)
350 PRK08416 7-alpha-hydroxysteroi 26.1 3.9E+02 0.0084 22.3 7.7 80 14-101 7-95 (260)
351 PRK06124 gluconate 5-dehydroge 26.0 3.8E+02 0.0082 22.1 11.4 79 14-101 10-96 (256)
352 PRK08643 acetoin reductase; Va 25.8 3E+02 0.0065 22.7 6.9 78 15-101 2-87 (256)
353 PRK05876 short chain dehydroge 25.8 2.9E+02 0.0063 23.6 7.0 76 15-101 6-91 (275)
354 TIGR00288 conserved hypothetic 25.7 1E+02 0.0022 25.6 3.8 23 15-37 107-129 (160)
355 cd02010 TPP_ALS Thiamine pyrop 25.6 67 0.0015 26.2 2.8 33 15-49 67-102 (177)
356 PRK09754 phenylpropionate diox 25.6 1.4E+02 0.0031 27.2 5.2 82 14-99 143-235 (396)
357 PRK11761 cysM cysteine synthas 25.6 2.4E+02 0.0053 25.0 6.6 51 14-75 62-113 (296)
358 cd08256 Zn_ADH2 Alcohol dehydr 25.6 1.2E+02 0.0027 26.6 4.7 37 10-47 170-207 (350)
359 PRK06935 2-deoxy-D-gluconate 3 25.6 3.2E+02 0.0069 22.7 7.0 78 14-101 14-99 (258)
360 PF06506 PrpR_N: Propionate ca 25.5 3.1E+02 0.0066 22.2 6.7 55 15-78 77-132 (176)
361 PRK08277 D-mannonate oxidoredu 25.3 2.6E+02 0.0056 23.6 6.5 78 14-100 9-94 (278)
362 TIGR00715 precor6x_red precorr 25.1 1.6E+02 0.0034 25.9 5.2 62 16-82 1-74 (256)
363 PRK05976 dihydrolipoamide dehy 24.9 1.2E+02 0.0025 28.5 4.6 66 15-84 180-248 (472)
364 COG0446 HcaD Uncharacterized N 24.9 3E+02 0.0064 24.2 7.0 87 15-105 136-237 (415)
365 PRK07792 fabG 3-ketoacyl-(acyl 24.8 4.7E+02 0.01 22.8 10.2 78 14-101 11-97 (306)
366 PRK06841 short chain dehydroge 24.7 2.6E+02 0.0056 23.1 6.3 77 15-102 15-98 (255)
367 cd00640 Trp-synth-beta_II Tryp 24.7 3E+02 0.0066 23.1 6.8 51 15-76 50-101 (244)
368 cd06589 GH31 The enzymes of gl 24.6 78 0.0017 27.5 3.1 28 55-82 63-90 (265)
369 PRK08177 short chain dehydroge 24.4 2.2E+02 0.0047 23.2 5.7 75 16-103 2-81 (225)
370 PRK07832 short chain dehydroge 24.2 2.4E+02 0.0052 23.8 6.1 76 17-101 2-86 (272)
371 cd06591 GH31_xylosidase_XylS X 24.2 83 0.0018 28.3 3.3 28 55-82 63-90 (319)
372 PF13167 GTP-bdg_N: GTP-bindin 24.1 2E+02 0.0044 21.6 4.9 15 92-106 56-70 (95)
373 PTZ00338 dimethyladenosine tra 24.1 3.5E+02 0.0076 24.2 7.3 80 12-106 34-114 (294)
374 cd05009 SIS_GlmS_GlmD_2 SIS (S 24.1 74 0.0016 24.3 2.7 26 6-32 4-29 (153)
375 cd02002 TPP_BFDC Thiamine pyro 24.0 44 0.00095 26.8 1.4 34 14-49 67-103 (178)
376 cd02005 TPP_PDC_IPDC Thiamine 23.6 95 0.0021 25.4 3.3 12 17-28 71-82 (183)
377 TIGR01289 LPOR light-dependent 23.5 2.8E+02 0.0062 24.3 6.6 78 15-101 3-89 (314)
378 PRK13394 3-hydroxybutyrate deh 23.4 3.1E+02 0.0067 22.6 6.5 78 15-101 7-92 (262)
379 cd02009 TPP_SHCHC_synthase Thi 23.4 80 0.0017 25.6 2.8 14 16-29 70-83 (175)
380 cd08285 NADP_ADH NADP(H)-depen 23.3 1.6E+02 0.0035 25.8 5.0 37 11-48 163-200 (351)
381 PRK06077 fabG 3-ketoacyl-(acyl 23.2 4.1E+02 0.009 21.6 11.0 80 15-102 6-93 (252)
382 PRK06988 putative formyltransf 23.2 1.4E+02 0.0029 27.0 4.5 34 16-49 3-37 (312)
383 cd08262 Zn_ADH8 Alcohol dehydr 23.2 1.3E+02 0.0028 26.2 4.3 35 11-46 158-193 (341)
384 cd03422 YedF YedF is a bacteri 23.2 2.1E+02 0.0046 19.7 4.6 34 137-171 24-57 (69)
385 TIGR03705 poly_P_kin polyphosp 23.0 1.3E+02 0.0028 30.5 4.7 55 26-86 371-428 (672)
386 PF05368 NmrA: NmrA-like famil 22.9 3.3E+02 0.0072 22.3 6.6 73 18-105 1-76 (233)
387 TIGR00345 arsA arsenite-activa 22.9 1.3E+02 0.0028 26.5 4.3 15 92-106 111-125 (284)
388 PRK07231 fabG 3-ketoacyl-(acyl 22.7 3.4E+02 0.0073 22.1 6.5 78 15-102 5-90 (251)
389 TIGR02818 adh_III_F_hyde S-(hy 22.7 3.5E+02 0.0076 24.2 7.1 38 10-48 181-219 (368)
390 COG0641 AslB Arylsulfatase reg 22.7 2.5E+02 0.0055 26.2 6.3 67 42-109 116-198 (378)
391 PRK07774 short chain dehydroge 22.6 3.3E+02 0.0072 22.3 6.5 80 15-103 6-93 (250)
392 PRK06163 hypothetical protein; 22.6 56 0.0012 27.7 1.8 36 14-49 75-112 (202)
393 COG3439 Uncharacterized conser 22.5 2.6E+02 0.0055 22.5 5.5 94 40-148 11-106 (137)
394 COG0240 GpsA Glycerol-3-phosph 22.5 2.2E+02 0.0048 26.4 5.7 83 16-106 2-84 (329)
395 PRK12823 benD 1,6-dihydroxycyc 22.4 4.5E+02 0.0097 21.7 7.4 77 15-101 8-92 (260)
396 PF06325 PrmA: Ribosomal prote 22.3 3.9E+02 0.0084 24.1 7.2 122 13-171 160-282 (295)
397 cd06598 GH31_transferase_CtsZ 22.3 84 0.0018 28.2 3.0 29 55-83 67-95 (317)
398 PF07669 Eco57I: Eco57I restri 22.3 1.4E+02 0.003 22.3 3.8 47 93-142 2-48 (106)
399 PRK08638 threonine dehydratase 22.1 2.9E+02 0.0063 25.0 6.5 50 16-76 76-126 (333)
400 PF03742 PetN: PetN ; InterPr 22.0 56 0.0012 19.7 1.2 9 26-34 15-23 (29)
401 PRK08217 fabG 3-ketoacyl-(acyl 22.0 4.1E+02 0.0088 21.6 6.9 79 14-102 4-91 (253)
402 PRK05928 hemD uroporphyrinogen 22.0 4.5E+02 0.0097 21.5 7.2 87 14-104 80-188 (249)
403 PRK07889 enoyl-(acyl carrier p 21.8 4.8E+02 0.01 21.9 11.6 80 14-101 6-93 (256)
404 cd06603 GH31_GANC_GANAB_alpha 21.8 94 0.002 28.2 3.2 28 55-82 61-88 (339)
405 PF13344 Hydrolase_6: Haloacid 21.8 1.1E+02 0.0023 22.8 3.0 30 55-84 14-43 (101)
406 PRK08226 short chain dehydroge 21.7 4E+02 0.0087 22.1 6.9 78 14-101 5-90 (263)
407 cd06594 GH31_glucosidase_YihQ 21.6 98 0.0021 27.9 3.3 30 55-84 68-97 (317)
408 PRK12778 putative bifunctional 21.6 2.5E+02 0.0053 28.3 6.4 67 13-84 568-635 (752)
409 cd01971 Nitrogenase_VnfN_like 21.6 3.5E+02 0.0076 25.3 7.1 37 12-48 290-328 (427)
410 PRK07666 fabG 3-ketoacyl-(acyl 21.6 4.5E+02 0.0097 21.4 10.5 79 15-102 7-93 (239)
411 TIGR01136 cysKM cysteine synth 21.4 3.6E+02 0.0079 23.6 6.8 55 14-80 57-112 (299)
412 PLN02896 cinnamyl-alcohol dehy 21.4 3.4E+02 0.0073 24.0 6.7 79 13-100 8-86 (353)
413 PRK05939 hypothetical protein; 21.4 2.5E+02 0.0054 26.0 6.0 82 16-106 63-144 (397)
414 TIGR03846 sulfopy_beta sulfopy 21.3 1E+02 0.0022 25.5 3.0 28 21-48 41-68 (181)
415 cd08267 MDR1 Medium chain dehy 21.3 4.9E+02 0.011 21.8 7.9 35 10-46 139-175 (319)
416 TIGR01284 alt_nitrog_alph nitr 21.3 1.8E+02 0.0039 27.7 5.1 38 12-49 322-361 (457)
417 PF08735 DUF1786: Putative pyr 21.3 1.5E+02 0.0033 26.4 4.3 44 28-79 6-49 (254)
418 PRK08329 threonine synthase; V 21.2 3.2E+02 0.007 24.8 6.6 50 16-76 105-155 (347)
419 PF07368 DUF1487: Protein of u 21.1 5.6E+02 0.012 22.3 9.2 85 15-106 5-109 (215)
420 PRK07282 acetolactate synthase 21.0 93 0.002 30.2 3.2 33 15-49 437-472 (566)
421 PRK07370 enoyl-(acyl carrier p 21.0 3.1E+02 0.0066 23.1 6.1 81 14-102 5-96 (258)
422 PRK08339 short chain dehydroge 21.0 5.1E+02 0.011 21.8 10.0 78 14-100 7-92 (263)
423 cd06595 GH31_xylosidase_XylS-l 20.9 1E+02 0.0023 27.3 3.3 27 55-81 71-97 (292)
424 PRK10717 cysteine synthase A; 20.9 3.7E+02 0.0081 24.0 6.9 50 15-75 64-114 (330)
425 TIGR01138 cysM cysteine syntha 20.8 4E+02 0.0086 23.5 6.9 52 14-76 58-110 (290)
426 cd05284 arabinose_DH_like D-ar 20.8 2E+02 0.0044 24.9 5.1 34 12-46 165-199 (340)
427 PRK12771 putative glutamate sy 20.8 3.9E+02 0.0085 25.8 7.4 77 13-98 135-227 (564)
428 PRK12770 putative glutamate sy 20.7 2E+02 0.0043 25.7 5.1 18 63-80 74-91 (352)
429 cd08269 Zn_ADH9 Alcohol dehydr 20.7 1.9E+02 0.004 24.5 4.7 38 9-48 124-163 (312)
430 PRK09853 putative selenate red 20.6 2.3E+02 0.0051 30.2 6.1 83 13-98 537-628 (1019)
431 PRK06718 precorrin-2 dehydroge 20.5 1.5E+02 0.0033 24.8 4.1 33 14-48 9-42 (202)
432 PRK12384 sorbitol-6-phosphate 20.5 4.3E+02 0.0092 21.8 6.8 78 15-101 2-89 (259)
433 cd03372 TPP_ComE Thiamine pyro 20.5 1.1E+02 0.0023 25.1 3.0 13 16-28 61-73 (179)
434 PF01210 NAD_Gly3P_dh_N: NAD-d 20.4 2.2E+02 0.0047 22.6 4.8 96 17-148 1-105 (157)
435 COG5564 Predicted TIM-barrel e 20.4 54 0.0012 29.1 1.2 59 46-106 57-126 (276)
436 PRK10262 thioredoxin reductase 20.3 2.6E+02 0.0057 24.4 5.7 66 14-84 145-212 (321)
437 smart00822 PKS_KR This enzymat 20.1 3.7E+02 0.008 19.9 5.9 80 17-102 2-90 (180)
438 COG1888 Uncharacterized protei 20.1 1.3E+02 0.0028 23.0 3.0 54 28-82 24-83 (97)
439 cd02004 TPP_BZL_OCoD_HPCL Thia 20.1 1.1E+02 0.0025 24.4 3.0 9 40-48 67-75 (172)
440 PRK12775 putative trifunctiona 20.1 2.2E+02 0.0048 30.1 5.8 65 14-83 570-635 (1006)
441 TIGR01317 GOGAT_sm_gam glutama 20.0 4E+02 0.0086 25.3 7.2 88 7-99 131-234 (485)
No 1
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=100.00 E-value=9.1e-68 Score=436.97 Aligned_cols=166 Identities=52% Similarity=0.913 Sum_probs=161.6
Q ss_pred EEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCCcccEEE
Q 044601 19 LLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTHKFDRVI 98 (213)
Q Consensus 19 LlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~~FDrIi 98 (213)
|||||||||||+|||++++++.+||||||||++++.+|||++.+||++|++.||+|+||||||+|++++.++.++|||||
T Consensus 1 LlvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIi 80 (166)
T PF10354_consen 1 LLVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRII 80 (166)
T ss_pred CeeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEE
Confidence 89999999999999999988999999999999999999999999999999999999999999999999988899999999
Q ss_pred EcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCCCCCcccHHhHHHHhCcEEEEEeecCCCCC
Q 044601 99 YNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGDPYNKWELVKKAEKIGLTLQEVVPFCKQDY 178 (213)
Q Consensus 99 FNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py~~W~i~~lA~~~gl~l~~~~~F~~~~y 178 (213)
|||||+| .+.+++.++|++||+||.+||+||+++|+ ++|+|||||++|+||++|||+++|+++||+|.+++||++++|
T Consensus 81 FNFPH~G-~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~-~~G~IhVTl~~~~py~~W~i~~lA~~~gl~l~~~~~F~~~~y 158 (166)
T PF10354_consen 81 FNFPHVG-GGSEDGKRNIRLNRELLRGFFKSASQLLK-PDGEIHVTLKDGQPYDSWNIEELAAEAGLVLVRKVPFDPSDY 158 (166)
T ss_pred EeCCCCC-CCccchhHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEeCCCCCCccccHHHHHHhcCCEEEEEecCCHHHC
Confidence 9999999 46778899999999999999999999998 999999999999999999999999999999999999999999
Q ss_pred CCCccccC
Q 044601 179 PGYDNKRA 186 (213)
Q Consensus 179 PgY~~krt 186 (213)
|||+|+||
T Consensus 159 pgY~~~rT 166 (166)
T PF10354_consen 159 PGYEHKRT 166 (166)
T ss_pred CCcccCCC
Confidence 99999997
No 2
>KOG4174 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.1e-61 Score=418.41 Aligned_cols=211 Identities=44% Similarity=0.714 Sum_probs=197.0
Q ss_pred CcccccccccCCCCCCeEEEEecCChhHHHHHHHHhC-CCCeEEEeccCCHH-HHHhhcchHHHHHHHHHhCCCEEEEee
Q 044601 1 METETEKWSNHYSSKQRILLVGEGDFSFSLCLAREFG-FAHNMVATCLDTQE-TIANKYSNAVDNVRELEERGCLVFYGV 78 (213)
Q Consensus 1 ~~~~~~k~~~~y~~~~~ILlVGEGnFSFS~aLa~~~~-~~~~l~ATs~ds~~-~l~~kY~~a~~ni~~L~~~g~~V~~gV 78 (213)
|+.++++|+.+|++.++||+|||||||||+||+.+++ ++.+|+|||||+++ +|.+|||++.+|+++|+.+||.|+|+|
T Consensus 43 ~~g~~~~~v~~~s~~~~ill~gEgdFSfs~sl~~~~g~sa~ni~atSlDsk~~dl~~KY~~~~~nv~~Lk~lG~~I~h~V 122 (282)
T KOG4174|consen 43 MDGIEERFVVPYSKKQKILLVGEGDFSFSLSLAPHFGRSAGNITATSLDSKEFDLKQKYPDAKENVEALKRLGGTILHGV 122 (282)
T ss_pred hccCceeeeeeccccccEEEecccchhhHHHHHHHhCccccceeeeeccchhhhhhhcccchHHHHHHHHHcCCceEecc
Confidence 7889999999999999999999999999999999998 89999999999999 999999999999999999999999999
Q ss_pred eccccCCCccccCCcccEEEEcCCcCCCcccccchHHHH-hhHHHHHHHHHHHHhhcccCCCeEEEEeccCCCCCcccHH
Q 044601 79 DAMQMSQHFFLRTHKFDRVIYNFPHVGFIFRENSYCQIQ-LNKELVKGFLRNAKLLLKEENGEIHVTHKEGDPYNKWELV 157 (213)
Q Consensus 79 DAt~L~~~~~l~~~~FDrIiFNFPH~G~~~~e~~~~~i~-~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py~~W~i~ 157 (213)
|||+|+.++.++.++||+|||||||.|.+.+-++++++. .||+|+++||++|++||++++|+|||||++++||+.|||+
T Consensus 123 dv~sl~~~~~~~~~~~d~IiFNFPH~G~g~~~e~d~~~i~~~qkL~rgFle~akemL~~edGeI~itlk~t~P~~~W~ik 202 (282)
T KOG4174|consen 123 DVTSLKFHADLRLQRYDNIIFNFPHSGKGIKFEQDRNIIPLHQKLFRGFLESAKEMLKDEDGEIHITLKTTYPFNPWNIK 202 (282)
T ss_pred cceeEEecccccccccceEEEcCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccCCCCchhhhh
Confidence 999999999999999999999999999765434554554 7999999999999999998999999999999999999999
Q ss_pred hHHHHhCcEEEEEeecCCCCCCCCccccCcCCCCCCCccCC--CceEEEEEeecCC
Q 044601 158 KKAEKIGLTLQEVVPFCKQDYPGYDNKRAQGYLSDAPFHIG--DSSTYKFRLFPQN 211 (213)
Q Consensus 158 ~lA~~~gl~l~~~~~F~~~~yPgY~~krt~g~~~d~~f~~~--~~~t~~F~~~~~~ 211 (213)
.||+..||.|.+...|+++.||||.|||+.|.+||.++... ++++|.|.+...+
T Consensus 203 ~Lak~~gl~L~~~skF~~~~~Pgy~~Kr~~gs~cd~p~l~~~~d~~~y~f~~~~~~ 258 (282)
T KOG4174|consen 203 FLAKEFGLTLLEDSKFEKSNYPGYSNKRGDGSRCDSPLLVHERDAIEYHFLKFVSP 258 (282)
T ss_pred HhhhhccccchhcccchhhcCCCcccccCCCcccCCccccccccceEEEEEeeccc
Confidence 99999999999999999999999999999999999888765 6888888776543
No 3
>KOG4174 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=8.2e-07 Score=78.30 Aligned_cols=135 Identities=19% Similarity=0.163 Sum_probs=108.0
Q ss_pred hhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCCcccEEEEcCCcCC
Q 044601 26 FSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTHKFDRVIYNFPHVG 105 (213)
Q Consensus 26 FSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~~FDrIiFNFPH~G 105 (213)
|+|+++|-..+....+++|||+.+..++.+. |.+.+|++-++..|..+.+.++.++.++-+.+..+-|+-+.+=+||.|
T Consensus 1 ~g~~ar~ke~~~l~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~g~~~~~v~~~s~~~~ill~gEgdFSfs~sl~~~~g 79 (282)
T KOG4174|consen 1 FGFAARLKETLDLSTQLTATCLQRPAELARD-PLAWENLQNLRMDGIEERFVVPYSKKQKILLVGEGDFSFSLSLAPHFG 79 (282)
T ss_pred CchHHHHHHHHHHHHHHHHHHhcchhhhccC-hhhHHHHhhhhhccCceeeeeeccccccEEEecccchhhHHHHHHHhC
Confidence 6899999777666789999999988777664 778899999999999999999999999888777788999999999999
Q ss_pred CcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCCCCCcccHHhHHHHhCcEEEEEeecCCCCCCCCcc
Q 044601 106 FIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGDPYNKWELVKKAEKIGLTLQEVVPFCKQDYPGYDN 183 (213)
Q Consensus 106 ~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py~~W~i~~lA~~~gl~l~~~~~F~~~~yPgY~~ 183 (213)
.... +| .+..|...+| -|++.+|-..|||+.|++-.+.++.+.-++.-..=+-++.
T Consensus 80 ~sa~-----ni-~atSlDsk~~----------------dl~~KY~~~~~nv~~Lk~lG~~I~h~Vdv~sl~~~~~~~~ 135 (282)
T KOG4174|consen 80 RSAG-----NI-TATSLDSKEF----------------DLKQKYPDAKENVEALKRLGGTILHGVDVTSLKFHADLRL 135 (282)
T ss_pred cccc-----ce-eeeeccchhh----------------hhhhcccchHHHHHHHHHcCCceEecccceeEEecccccc
Confidence 5321 22 5666766666 4556788889999999999999998875554433333443
No 4
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=97.86 E-value=9.2e-05 Score=61.88 Aligned_cols=147 Identities=19% Similarity=0.215 Sum_probs=96.5
Q ss_pred ccccCCC-CCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCC
Q 044601 7 KWSNHYS-SKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQ 85 (213)
Q Consensus 7 k~~~~y~-~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~ 85 (213)
.|-.-|. +..+||=+|-|+=.|+.+||+.+. ..++++.-.. ..+.++ +..++....-.++.+ ...|+.++..
T Consensus 8 ~~~~~f~~~~~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~--~~~l~~---a~~~~~~~~l~ni~~-i~~d~~~~~~ 80 (194)
T TIGR00091 8 DFATVFGNKAPLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIH--TPIVLA---ANNKANKLGLKNLHV-LCGDANELLD 80 (194)
T ss_pred CHHHHhCCCCceEEEeCCCccHHHHHHHHhCC-CCCEEEEEee--HHHHHH---HHHHHHHhCCCCEEE-EccCHHHHHH
Confidence 4544444 467899999999999999998863 5577665444 333332 444554332123444 4558877542
Q ss_pred CccccCCcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCCCCCcccHHhHHHHhCc
Q 044601 86 HFFLRTHKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGDPYNKWELVKKAEKIGL 165 (213)
Q Consensus 86 ~~~l~~~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py~~W~i~~lA~~~gl 165 (213)
.. +....+|.|+.|||..-.+.+. ..+|.+...|++.+..+|+ ++|.++++.- ...|..|=++.+.+..+|
T Consensus 81 ~~-~~~~~~d~v~~~~pdpw~k~~h------~~~r~~~~~~l~~~~r~Lk-pgG~l~~~td-~~~~~~~~~~~~~~~~~f 151 (194)
T TIGR00091 81 KF-FPDGSLSKVFLNFPDPWPKKRH------NKRRITQPHFLKEYANVLK-KGGVIHFKTD-NEPLFEDMLKVLSENDLF 151 (194)
T ss_pred hh-CCCCceeEEEEECCCcCCCCCc------cccccCCHHHHHHHHHHhC-CCCEEEEEeC-CHHHHHHHHHHHHhCCCe
Confidence 21 2245799999999865433211 1344556789999999998 9999998874 345778878888877777
Q ss_pred EEEE
Q 044601 166 TLQE 169 (213)
Q Consensus 166 ~l~~ 169 (213)
....
T Consensus 152 ~~~~ 155 (194)
T TIGR00091 152 ENTS 155 (194)
T ss_pred Eecc
Confidence 7654
No 5
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=97.50 E-value=0.0007 Score=55.41 Aligned_cols=112 Identities=22% Similarity=0.245 Sum_probs=70.5
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCCc
Q 044601 14 SKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTHK 93 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~~ 93 (213)
...+||=+|=|.==.|.+|++.. +...|+|+-.+ .+.+ + -+..|++...-.++.++ .-|. -+. +...+
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~-~~a~-~---~a~~n~~~n~~~~v~~~-~~d~---~~~--~~~~~ 98 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDIN-PDAL-E---LAKRNAERNGLENVEVV-QSDL---FEA--LPDGK 98 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESB-HHHH-H---HHHHHHHHTTCTTEEEE-ESST---TTT--CCTTC
T ss_pred cCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCC-HHHH-H---HHHHHHHhcCccccccc-cccc---ccc--ccccc
Confidence 67789999999877777777664 34457666444 2222 2 24556555443333333 2232 222 23688
Q ss_pred ccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEecc
Q 044601 94 FDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKE 147 (213)
Q Consensus 94 FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~ 147 (213)
||.||+|-|...+. .....++..|+..|+.+|+ ++|++.+-...
T Consensus 99 fD~Iv~NPP~~~~~---------~~~~~~~~~~i~~a~~~Lk-~~G~l~lv~~~ 142 (170)
T PF05175_consen 99 FDLIVSNPPFHAGG---------DDGLDLLRDFIEQARRYLK-PGGRLFLVINS 142 (170)
T ss_dssp EEEEEE---SBTTS---------HCHHHHHHHHHHHHHHHEE-EEEEEEEEEET
T ss_pred eeEEEEccchhccc---------ccchhhHHHHHHHHHHhcc-CCCEEEEEeec
Confidence 99999999955432 2356788999999999998 99999876654
No 6
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=97.47 E-value=0.00064 Score=51.06 Aligned_cols=115 Identities=23% Similarity=0.174 Sum_probs=73.1
Q ss_pred CeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCCccc
Q 044601 16 QRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTHKFD 95 (213)
Q Consensus 16 ~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~~FD 95 (213)
.+||=+|=|.=+|+.++++.. ..++++.-.|....-. +..|+....-..-.-++.-|+.++.+. +...+||
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~-----a~~~~~~~~~~~~~~~~~~D~~~~~~~--~~~~~~D 72 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVEL-----ARRNLPRNGLDDRVEVIVGDARDLPEP--LPDGKFD 72 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHH-----HHHHCHHCTTTTTEEEEESHHHHHHHT--CTTT-EE
T ss_pred CEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHH-----HHHHHHHccCCceEEEEECchhhchhh--ccCceeE
Confidence 467777666667777777664 6788888888542111 234444432222245677788777533 3468899
Q ss_pred EEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEec
Q 044601 96 RVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHK 146 (213)
Q Consensus 96 rIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~ 146 (213)
.||+|-|....... ...++.+...|++.+.++|+ ++|.+.+.+.
T Consensus 73 ~Iv~npP~~~~~~~------~~~~~~~~~~~~~~~~~~L~-~gG~~~~~~~ 116 (117)
T PF13659_consen 73 LIVTNPPYGPRSGD------KAALRRLYSRFLEAAARLLK-PGGVLVFITP 116 (117)
T ss_dssp EEEE--STTSBTT----------GGCHHHHHHHHHHHHEE-EEEEEEEEEE
T ss_pred EEEECCCCcccccc------chhhHHHHHHHHHHHHHHcC-CCeEEEEEeC
Confidence 99999999874221 22344488899999999998 9999887653
No 7
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=97.42 E-value=0.0022 Score=58.73 Aligned_cols=115 Identities=20% Similarity=0.266 Sum_probs=76.5
Q ss_pred CCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCCcc
Q 044601 15 KQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTHKF 94 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~~F 94 (213)
..+||=+|=|.=.++..|++.. +...|+++-.+ ...+.. +..|++.-. ..+.+ +..|+.. . + ..+|
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis-~~Al~~----A~~nl~~n~-l~~~~-~~~D~~~---~--~-~~~f 262 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVS-AAALES----SRATLAANG-LEGEV-FASNVFS---D--I-KGRF 262 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECC-HHHHHH----HHHHHHHcC-CCCEE-EEccccc---c--c-CCCc
Confidence 3589999999889999999875 34566665544 333322 455554421 12333 2334432 1 1 4679
Q ss_pred cEEEEcCCc-CCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCCCCCcc
Q 044601 95 DRVIYNFPH-VGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGDPYNKW 154 (213)
Q Consensus 95 DrIiFNFPH-~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py~~W 154 (213)
|.||.|.|. .|.. .+......|++.|..+|+ ++|+++|....--||..|
T Consensus 263 DlIvsNPPFH~g~~----------~~~~~~~~~i~~a~~~Lk-pgG~L~iVan~~l~y~~~ 312 (342)
T PRK09489 263 DMIISNPPFHDGIQ----------TSLDAAQTLIRGAVRHLN-SGGELRIVANAFLPYPDL 312 (342)
T ss_pred cEEEECCCccCCcc----------ccHHHHHHHHHHHHHhcC-cCCEEEEEEeCCCChHHH
Confidence 999999994 4431 344677899999999998 999999988777777753
No 8
>PRK14968 putative methyltransferase; Provisional
Probab=97.27 E-value=0.028 Score=45.32 Aligned_cols=141 Identities=22% Similarity=0.277 Sum_probs=84.7
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHH--hCCCEEEEeeeccccCCCcccc
Q 044601 13 SSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELE--ERGCLVFYGVDAMQMSQHFFLR 90 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~--~~g~~V~~gVDAt~L~~~~~l~ 90 (213)
.+..+||-+|=|+=.++..|++. +.+++++-.+. +..+ .+..|+.... ..++.++ ..|+.+ . +.
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~--~~~~---~a~~~~~~~~~~~~~~~~~-~~d~~~---~--~~ 87 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINP--YAVE---CAKCNAKLNNIRNNGVEVI-RSDLFE---P--FR 87 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh---cceEEEEECCH--HHHH---HHHHHHHHcCCCCcceEEE-eccccc---c--cc
Confidence 56789999999988889888876 46787766552 2222 2344544322 2224443 234322 2 12
Q ss_pred CCcccEEEEcCCcCCCccccc---chHHH----HhhHHHHHHHHHHHHhhcccCCCeEEEEeccCCCCCcccHHhHHHHh
Q 044601 91 THKFDRVIYNFPHVGFIFREN---SYCQI----QLNKELVKGFLRNAKLLLKEENGEIHVTHKEGDPYNKWELVKKAEKI 163 (213)
Q Consensus 91 ~~~FDrIiFNFPH~G~~~~e~---~~~~i----~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py~~W~i~~lA~~~ 163 (213)
...||.|++|.|......... ..+.. ...+..+..|++.+..+|+ ++|.+.+.+...... =.+..+..+.
T Consensus 88 ~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk-~gG~~~~~~~~~~~~--~~l~~~~~~~ 164 (188)
T PRK14968 88 GDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLK-PGGRILLLQSSLTGE--DEVLEYLEKL 164 (188)
T ss_pred ccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcC-CCeEEEEEEcccCCH--HHHHHHHHHC
Confidence 347999999999765321000 00000 0125678899999999998 999988877432111 1345677778
Q ss_pred CcEEEEE
Q 044601 164 GLTLQEV 170 (213)
Q Consensus 164 gl~l~~~ 170 (213)
|+.....
T Consensus 165 g~~~~~~ 171 (188)
T PRK14968 165 GFEAEVV 171 (188)
T ss_pred CCeeeee
Confidence 8876544
No 9
>PRK03612 spermidine synthase; Provisional
Probab=97.04 E-value=0.0057 Score=58.92 Aligned_cols=136 Identities=24% Similarity=0.291 Sum_probs=86.9
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCH-HHHHhhcchH-HHHHHHHHhCCCEEEEeeeccccCCCcccc
Q 044601 13 SSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQ-ETIANKYSNA-VDNVRELEERGCLVFYGVDAMQMSQHFFLR 90 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~-~~l~~kY~~a-~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~ 90 (213)
.+.++||.+|=|+=..+..++++ +...+|++--.|.+ -++.++++.- .-|-..+..-.++++.+ |+.+.-...
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~-Da~~~l~~~--- 370 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVND-DAFNWLRKL--- 370 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEC-hHHHHHHhC---
Confidence 45689999999999999998874 33368888887743 1222322111 00111233335666555 777632221
Q ss_pred CCcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCCCC----CcccHHhHHHHhCc
Q 044601 91 THKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGDPY----NKWELVKKAEKIGL 165 (213)
Q Consensus 91 ~~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py----~~W~i~~lA~~~gl 165 (213)
..+||.||-|+|+..... ..+..-..||+.+++.|+ |+|.+.+... .|+ .-|.+....++.|+
T Consensus 371 ~~~fDvIi~D~~~~~~~~---------~~~L~t~ef~~~~~~~L~-pgG~lv~~~~--~~~~~~~~~~~i~~~l~~~gf 437 (521)
T PRK03612 371 AEKFDVIIVDLPDPSNPA---------LGKLYSVEFYRLLKRRLA-PDGLLVVQST--SPYFAPKAFWSIEATLEAAGL 437 (521)
T ss_pred CCCCCEEEEeCCCCCCcc---------hhccchHHHHHHHHHhcC-CCeEEEEecC--CcccchHHHHHHHHHHHHcCC
Confidence 368999999999765311 122223579999999998 9999877652 333 23788888888888
No 10
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=97.01 E-value=0.039 Score=46.35 Aligned_cols=130 Identities=20% Similarity=0.169 Sum_probs=89.2
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCC
Q 044601 13 SSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTH 92 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~ 92 (213)
.+..+||=+|=|.=.+|.+++++.. +..+++ .|..+++.+ .+..|++.+.-.++.+ ..-|+..+.. ..
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~-~~~V~g--iD~s~~~l~---~A~~~~~~~~l~~i~~-~~~d~~~~~~-----~~ 111 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARP-ELKVTL--VDSLGKKIA---FLREVAAELGLKNVTV-VHGRAEEFGQ-----EE 111 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCC-CCeEEE--EeCcHHHHH---HHHHHHHHcCCCCEEE-EeccHhhCCC-----CC
Confidence 3478999999998888888887653 445554 465444444 2555665544323444 4447776532 46
Q ss_pred cccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCCCCCcccHHhHHHHhCcEEEEEee
Q 044601 93 KFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGDPYNKWELVKKAEKIGLTLQEVVP 172 (213)
Q Consensus 93 ~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py~~W~i~~lA~~~gl~l~~~~~ 172 (213)
+||.|+.|. .+ -+..|+..+.++|+ ++|.+.+-... -..+.++.+++..|+.+.....
T Consensus 112 ~fDlV~~~~--~~----------------~~~~~l~~~~~~Lk-pGG~lv~~~~~---~~~~~l~~~~~~~~~~~~~~~~ 169 (187)
T PRK00107 112 KFDVVTSRA--VA----------------SLSDLVELCLPLLK-PGGRFLALKGR---DPEEEIAELPKALGGKVEEVIE 169 (187)
T ss_pred CccEEEEcc--cc----------------CHHHHHHHHHHhcC-CCeEEEEEeCC---ChHHHHHHHHHhcCceEeeeEE
Confidence 899999862 11 13578999999998 99998877643 3567788899999999998877
Q ss_pred cCCC
Q 044601 173 FCKQ 176 (213)
Q Consensus 173 F~~~ 176 (213)
..-+
T Consensus 170 ~~~~ 173 (187)
T PRK00107 170 LTLP 173 (187)
T ss_pred EecC
Confidence 6443
No 11
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=96.99 E-value=0.0064 Score=51.19 Aligned_cols=146 Identities=19% Similarity=0.193 Sum_probs=88.9
Q ss_pred ccccccCCCC-CCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeec-cc
Q 044601 5 TEKWSNHYSS-KQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDA-MQ 82 (213)
Q Consensus 5 ~~k~~~~y~~-~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDA-t~ 82 (213)
...|...|.+ ..+||=+|=|.=.++..|++... ..+++|.-... +..+ .+..+++...-.++. +..-|+ ..
T Consensus 30 ~~~~~~~~~~~~~~VLDiGcGtG~~~~~la~~~p-~~~v~gVD~s~--~~i~---~a~~~~~~~~~~~v~-~~~~d~~~~ 102 (202)
T PRK00121 30 PLDWAELFGNDAPIHLEIGFGKGEFLVEMAKANP-DINFIGIEVHE--PGVG---KALKKIEEEGLTNLR-LLCGDAVEV 102 (202)
T ss_pred CCCHHHHcCCCCCeEEEEccCCCHHHHHHHHHCC-CccEEEEEech--HHHH---HHHHHHHHcCCCCEE-EEecCHHHH
Confidence 3445555555 67899998888888888887763 45677765553 2222 244444433212333 344577 55
Q ss_pred cCCCccccCCcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCCCCCcccHHhHHHH
Q 044601 83 MSQHFFLRTHKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGDPYNKWELVKKAEK 162 (213)
Q Consensus 83 L~~~~~l~~~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py~~W~i~~lA~~ 162 (213)
+... +....||.|+.|||........ ...+.+...|++.+..+|+ |+|.+.|+... ..+ ...+.....+
T Consensus 103 l~~~--~~~~~~D~V~~~~~~p~~~~~~------~~~~~~~~~~l~~i~~~Lk-pgG~l~i~~~~-~~~-~~~~~~~~~~ 171 (202)
T PRK00121 103 LLDM--FPDGSLDRIYLNFPDPWPKKRH------HKRRLVQPEFLALYARKLK-PGGEIHFATDW-EGY-AEYMLEVLSA 171 (202)
T ss_pred HHHH--cCccccceEEEECCCCCCCccc------cccccCCHHHHHHHHHHcC-CCCEEEEEcCC-HHH-HHHHHHHHHh
Confidence 5422 2356799999999864332111 1223346789999999998 99999987642 222 3345566666
Q ss_pred hCcEEE
Q 044601 163 IGLTLQ 168 (213)
Q Consensus 163 ~gl~l~ 168 (213)
.|+...
T Consensus 172 ~g~~~~ 177 (202)
T PRK00121 172 EGGFLV 177 (202)
T ss_pred Cccccc
Confidence 776554
No 12
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=96.97 E-value=0.015 Score=54.11 Aligned_cols=137 Identities=18% Similarity=0.142 Sum_probs=84.2
Q ss_pred CCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCC-CEEEEeeeccccCCCccccCCc
Q 044601 15 KQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERG-CLVFYGVDAMQMSQHFFLRTHK 93 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g-~~V~~gVDAt~L~~~~~l~~~~ 93 (213)
..+||=+|=|+=-.+..|++.. +...|+++-.. +..+.. ++.|++.....+ ..+ .+.+.+.-+. +...+
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S-~~Av~~----A~~N~~~n~~~~~~~v--~~~~~D~l~~--~~~~~ 298 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDES-PMAVAS----SRLNVETNMPEALDRC--EFMINNALSG--VEPFR 298 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhC-CCCEEEEEECC-HHHHHH----HHHHHHHcCcccCceE--EEEEcccccc--CCCCC
Confidence 3589999888878888888876 35567665443 333322 566665442111 112 2222222221 22457
Q ss_pred ccEEEEcCC-cCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCCCCCcc------cHHhHHHHhCcE
Q 044601 94 FDRVIYNFP-HVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGDPYNKW------ELVKKAEKIGLT 166 (213)
Q Consensus 94 FDrIiFNFP-H~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py~~W------~i~~lA~~~gl~ 166 (213)
||.|+.|-| |.|.. ....+...+|..|..+|+ ++|+++|......+|..+ +++.+|+..+|+
T Consensus 299 fDlIlsNPPfh~~~~----------~~~~ia~~l~~~a~~~Lk-pGG~L~iV~nr~l~y~~~L~~~fg~~~~va~~~kf~ 367 (378)
T PRK15001 299 FNAVLCNPPFHQQHA----------LTDNVAWEMFHHARRCLK-INGELYIVANRHLDYFHKLKKIFGNCTTIATNNKFV 367 (378)
T ss_pred EEEEEECcCcccCcc----------CCHHHHHHHHHHHHHhcc-cCCEEEEEEecCcCHHHHHHHHcCCceEEccCCCEE
Confidence 999999999 55532 122356689999999998 999999987554455322 344566777777
Q ss_pred EEEEee
Q 044601 167 LQEVVP 172 (213)
Q Consensus 167 l~~~~~ 172 (213)
+.+..+
T Consensus 368 vl~a~k 373 (378)
T PRK15001 368 VLKAVK 373 (378)
T ss_pred EEEEEe
Confidence 776654
No 13
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=96.97 E-value=0.031 Score=41.37 Aligned_cols=111 Identities=23% Similarity=0.286 Sum_probs=71.6
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCCc
Q 044601 14 SKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTHK 93 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~~ 93 (213)
++.+||=+|=|.=+++..|++.+. +.+++|.-++ +++.+ -+.+++.+.....-.-++.-|+ ...... ...
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~-~~~v~gvD~s--~~~~~---~a~~~~~~~~~~~~i~~~~~d~-~~~~~~---~~~ 70 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFP-GARVVGVDIS--PEMLE---IARERAAEEGLSDRITFVQGDA-EFDPDF---LEP 70 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHT-TSEEEEEESS--HHHHH---HHHHHHHHTTTTTTEEEEESCC-HGGTTT---SSC
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCC-CCEEEEEeCC--HHHHH---HHHHHHHhcCCCCCeEEEECcc-ccCccc---CCC
Confidence 468999999999999999999764 6677777665 33333 2555554422222233555666 222222 356
Q ss_pred ccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEe
Q 044601 94 FDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTH 145 (213)
Q Consensus 94 FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl 145 (213)
||.|+.+. .+.... .+..-...+++.+.++|+ |+|.+.|+-
T Consensus 71 ~D~v~~~~-~~~~~~---------~~~~~~~~~l~~~~~~L~-pgG~lvi~~ 111 (112)
T PF12847_consen 71 FDLVICSG-FTLHFL---------LPLDERRRVLERIRRLLK-PGGRLVINT 111 (112)
T ss_dssp EEEEEECS-GSGGGC---------CHHHHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred CCEEEECC-Cccccc---------cchhHHHHHHHHHHHhcC-CCcEEEEEE
Confidence 99999998 432211 111445567889999998 999999875
No 14
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=96.96 E-value=0.04 Score=48.14 Aligned_cols=139 Identities=17% Similarity=0.095 Sum_probs=85.0
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCCc
Q 044601 14 SKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTHK 93 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~~ 93 (213)
...+||=+|=|.=.++++|++... +..++|.-.+ .+.+ + -+..|++. .|+++ ..-|+.+.-... + ..+
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis-~~al-~---~A~~N~~~---~~~~~-~~~D~~~~l~~~-~-~~~ 153 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALD-GIELHAADID-PAAV-R---CARRNLAD---AGGTV-HEGDLYDALPTA-L-RGR 153 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCC-CCEEEEEECC-HHHH-H---HHHHHHHH---cCCEE-EEeechhhcchh-c-CCC
Confidence 345899888888788888887753 4577765444 2322 2 25566543 35554 334654421111 1 257
Q ss_pred ccEEEEcCCcCCCcccccchHHHHhh------------HHHHHHHHHHHHhhcccCCCeEEEEeccCCCCCcccHHhHHH
Q 044601 94 FDRVIYNFPHVGFIFRENSYCQIQLN------------KELVKGFLRNAKLLLKEENGEIHVTHKEGDPYNKWELVKKAE 161 (213)
Q Consensus 94 FDrIiFNFPH~G~~~~e~~~~~i~~n------------~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py~~W~i~~lA~ 161 (213)
||.||.|-|-............++.+ ..+++.++.+|..+|+ ++|.+.+.+-..+ .-.+..+.+
T Consensus 154 fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~-~gG~l~l~~~~~~---~~~v~~~l~ 229 (251)
T TIGR03704 154 VDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLA-PGGHLLVETSERQ---APLAVEAFA 229 (251)
T ss_pred EeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcC-CCCEEEEEECcch---HHHHHHHHH
Confidence 99999999988642111001111111 3457899999999998 9999988875432 335777777
Q ss_pred HhCcEEE
Q 044601 162 KIGLTLQ 168 (213)
Q Consensus 162 ~~gl~l~ 168 (213)
+.||...
T Consensus 230 ~~g~~~~ 236 (251)
T TIGR03704 230 RAGLIAR 236 (251)
T ss_pred HCCCCce
Confidence 7776543
No 15
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=96.88 E-value=0.03 Score=50.60 Aligned_cols=135 Identities=15% Similarity=0.034 Sum_probs=83.0
Q ss_pred CCCCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCcccc
Q 044601 11 HYSSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLR 90 (213)
Q Consensus 11 ~y~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~ 90 (213)
...++++||=+|=|.=+|+..++. . +..+++.-.+ ..+.+ .+..|++...-.++ .+..-|++++.. .
T Consensus 179 ~~~~g~~vLDp~cGtG~~lieaa~-~--~~~v~g~Di~--~~~~~---~a~~nl~~~g~~~i-~~~~~D~~~l~~----~ 245 (329)
T TIGR01177 179 RVTEGDRVLDPFCGTGGFLIEAGL-M--GAKVIGCDID--WKMVA---GARINLEHYGIEDF-FVKRGDATKLPL----S 245 (329)
T ss_pred CCCCcCEEEECCCCCCHHHHHHHH-h--CCeEEEEcCC--HHHHH---HHHHHHHHhCCCCC-eEEecchhcCCc----c
Confidence 345677888644444444444332 2 4567766444 33333 25667655432233 345668887642 2
Q ss_pred CCcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCCCCCcccHHhHHHHhCcEEEEE
Q 044601 91 THKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGDPYNKWELVKKAEKIGLTLQEV 170 (213)
Q Consensus 91 ~~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py~~W~i~~lA~~~gl~l~~~ 170 (213)
...||.||.|-|--...... ......|...++..+.++|+ ++|.+.+.+.+.. .+..+++.+|+ +...
T Consensus 246 ~~~~D~Iv~dPPyg~~~~~~-----~~~~~~l~~~~l~~~~r~Lk-~gG~lv~~~~~~~-----~~~~~~~~~g~-i~~~ 313 (329)
T TIGR01177 246 SESVDAIATDPPYGRSTTAA-----GDGLESLYERSLEEFHEVLK-SEGWIVYAVPTRI-----DLESLAEDAFR-VVKR 313 (329)
T ss_pred cCCCCEEEECCCCcCccccc-----CCchHHHHHHHHHHHHHHcc-CCcEEEEEEcCCC-----CHHHHHhhcCc-chhe
Confidence 56899999998854321110 11234678999999999998 9999988875432 34578999999 5543
No 16
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=96.86 E-value=0.036 Score=52.12 Aligned_cols=147 Identities=16% Similarity=0.135 Sum_probs=91.7
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCC
Q 044601 13 SSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTH 92 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~ 92 (213)
.++++||=+|=|.=++|..+++..+....|+|.-.+ ++..+ .+.+|++.+.-.++ ....-|++++..... .
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~--~~~l~---~~~~n~~~~g~~~v-~~~~~D~~~~~~~~~---~ 319 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIH--EHKLK---LIEENAKRLGLTNI-ETKALDARKVHEKFA---E 319 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCC--HHHHH---HHHHHHHHcCCCeE-EEEeCCcccccchhc---c
Confidence 467899999999999999999887545566665444 22222 25566654422222 344567777643321 6
Q ss_pred cccEEEEcCCcCCCcccc---c-----chHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCCC-CCcccHHhHHHHh
Q 044601 93 KFDRVIYNFPHVGFIFRE---N-----SYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGDP-YNKWELVKKAEKI 163 (213)
Q Consensus 93 ~FDrIiFNFPH~G~~~~e---~-----~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~p-y~~W~i~~lA~~~ 163 (213)
.||+|+.|-|+.|.+... + ....+..-..+-..++..|..+|+ ++|.+..+-|.-.| -+...+..+.++.
T Consensus 320 ~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~Lk-pGG~lvystcs~~~~Ene~vv~~~l~~~ 398 (444)
T PRK14902 320 KFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLK-KGGILVYSTCTIEKEENEEVIEAFLEEH 398 (444)
T ss_pred cCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcC-CCCEEEEEcCCCChhhhHHHHHHHHHhC
Confidence 799999999988753210 0 112233334556789999999998 99998866665433 2455666544443
Q ss_pred -CcEEEE
Q 044601 164 -GLTLQE 169 (213)
Q Consensus 164 -gl~l~~ 169 (213)
++.+..
T Consensus 399 ~~~~~~~ 405 (444)
T PRK14902 399 PEFELVP 405 (444)
T ss_pred CCcEEec
Confidence 465544
No 17
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=96.86 E-value=0.032 Score=52.39 Aligned_cols=149 Identities=17% Similarity=0.128 Sum_probs=95.7
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCC
Q 044601 13 SSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTH 92 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~ 92 (213)
.++++||=+|=|-=.+|..|++..+....|+| .|......+ .+..|++.+.-.++ ....-|++++.........
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a--~D~~~~rl~---~~~~n~~r~g~~~v-~~~~~D~~~~~~~~~~~~~ 324 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWA--VDRSASRLK---KLQENAQRLGLKSI-KILAADSRNLLELKPQWRG 324 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEE--EcCCHHHHH---HHHHHHHHcCCCeE-EEEeCChhhcccccccccc
Confidence 35689999999988889999887654445554 454333333 35666654422222 3456788887543222246
Q ss_pred cccEEEEcCCcCCCccc---cc-----chHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCCCC-CcccHHhHHH-H
Q 044601 93 KFDRVIYNFPHVGFIFR---EN-----SYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGDPY-NKWELVKKAE-K 162 (213)
Q Consensus 93 ~FDrIiFNFPH~G~~~~---e~-----~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py-~~W~i~~lA~-~ 162 (213)
.||+|+-|=|+.|.+.. .+ ....+.....|....+.+|..+|+ ++|.+..+-|+-.|- +.-+|..+.+ +
T Consensus 325 ~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk-pgG~lvystcsi~~~Ene~~v~~~l~~~ 403 (434)
T PRK14901 325 YFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLK-PGGTLVYATCTLHPAENEAQIEQFLARH 403 (434)
T ss_pred cCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEeCCCChhhHHHHHHHHHHhC
Confidence 79999999999984321 11 113344455667899999999998 999988777765543 4566666444 4
Q ss_pred hCcEEE
Q 044601 163 IGLTLQ 168 (213)
Q Consensus 163 ~gl~l~ 168 (213)
.++.+.
T Consensus 404 ~~~~~~ 409 (434)
T PRK14901 404 PDWKLE 409 (434)
T ss_pred CCcEec
Confidence 467654
No 18
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.84 E-value=0.065 Score=46.27 Aligned_cols=142 Identities=16% Similarity=0.089 Sum_probs=86.6
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCC
Q 044601 13 SSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTH 92 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~ 92 (213)
.+..+||=+|-|.=.++.+|++... ...++++-.+ +...+ .+..|++.....++.+ ...|+... +...
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis--~~~l~---~a~~n~~~~~~~~i~~-~~~d~~~~-----~~~~ 174 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERP-DAEVTAVDIS--PEALA---VARRNAKHGLGARVEF-LQGDWFEP-----LPGG 174 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECC--HHHHH---HHHHHHHhCCCCcEEE-EEccccCc-----CCCC
Confidence 4567999999998889999998873 5577776544 22222 3566666111123333 33355321 1246
Q ss_pred cccEEEEcCCcCCCcccccchHHHH------------hhHHHHHHHHHHHHhhcccCCCeEEEEeccCCCCCcccHHhHH
Q 044601 93 KFDRVIYNFPHVGFIFRENSYCQIQ------------LNKELVKGFLRNAKLLLKEENGEIHVTHKEGDPYNKWELVKKA 160 (213)
Q Consensus 93 ~FDrIiFNFPH~G~~~~e~~~~~i~------------~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py~~W~i~~lA 160 (213)
+||.||-|.|.............+. ..-.++..|+..|..+|+ ++|.+.+.+-. ...-++..+.
T Consensus 175 ~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk-~gG~l~~e~g~---~~~~~~~~~l 250 (275)
T PRK09328 175 RFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLK-PGGWLLLEIGY---DQGEAVRALL 250 (275)
T ss_pred ceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcc-cCCEEEEEECc---hHHHHHHHHH
Confidence 8999999999887421111111121 123567889999999998 99999886521 1223466677
Q ss_pred HHhCcEEEEE
Q 044601 161 EKIGLTLQEV 170 (213)
Q Consensus 161 ~~~gl~l~~~ 170 (213)
+..|+.-+..
T Consensus 251 ~~~gf~~v~~ 260 (275)
T PRK09328 251 AAAGFADVET 260 (275)
T ss_pred HhCCCceeEE
Confidence 7788864433
No 19
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=96.80 E-value=0.067 Score=45.06 Aligned_cols=109 Identities=17% Similarity=0.233 Sum_probs=69.5
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccC
Q 044601 12 YSSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRT 91 (213)
Q Consensus 12 y~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~ 91 (213)
..++++||=+|=|.=+++..|++..++...+++.-.. ++..+ .+..++....-..+.++ .-|+..+. +..
T Consensus 43 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s--~~~~~---~a~~~~~~~~~~~v~~~-~~d~~~~~----~~~ 112 (231)
T TIGR02752 43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFS--ENMLS---VGRQKVKDAGLHNVELV-HGNAMELP----FDD 112 (231)
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECC--HHHHH---HHHHHHHhcCCCceEEE-EechhcCC----CCC
Confidence 3467899999999999999999987655577665443 23332 24555543322234443 33666543 235
Q ss_pred CcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEe
Q 044601 92 HKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTH 145 (213)
Q Consensus 92 ~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl 145 (213)
..||.|+.+++.--. ++ ...+++.+..+|+ ++|.+.+..
T Consensus 113 ~~fD~V~~~~~l~~~---~~-----------~~~~l~~~~~~Lk-~gG~l~~~~ 151 (231)
T TIGR02752 113 NSFDYVTIGFGLRNV---PD-----------YMQVLREMYRVVK-PGGKVVCLE 151 (231)
T ss_pred CCccEEEEecccccC---CC-----------HHHHHHHHHHHcC-cCeEEEEEE
Confidence 689999998763221 10 1256778889998 999987643
No 20
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=96.77 E-value=0.058 Score=45.23 Aligned_cols=133 Identities=18% Similarity=0.164 Sum_probs=79.2
Q ss_pred CeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCCccc
Q 044601 16 QRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTHKFD 95 (213)
Q Consensus 16 ~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~~FD 95 (213)
++||=||=|.=.++..+++.++ ..++++..++ .+.+. .+..++....-.+..-....|+.+.. . ...||
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s-~~~~~----~a~~~~~~~gl~~~i~~~~~d~~~~~--~---~~~fD 69 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHP-HLQLHGYTIS-PEQAE----VGRERIRALGLQGRIRIFYRDSAKDP--F---PDTYD 69 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCC-CCEEEEEECC-HHHHH----HHHHHHHhcCCCcceEEEecccccCC--C---CCCCC
Confidence 4789999888778888888874 4567766553 33222 23444432211111123345664431 1 24799
Q ss_pred EEEEc--CCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCCCCC----------c---ccHHhHH
Q 044601 96 RVIYN--FPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGDPYN----------K---WELVKKA 160 (213)
Q Consensus 96 rIiFN--FPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py~----------~---W~i~~lA 160 (213)
.|+-+ +.|++. ...+|+++..+|+ |+|.+.++--...... . =.+..+.
T Consensus 70 ~I~~~~~l~~~~~----------------~~~~l~~~~~~Lk-pgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l 132 (224)
T smart00828 70 LVFGFEVIHHIKD----------------KMDLFSNISRHLK-DGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELL 132 (224)
T ss_pred EeehHHHHHhCCC----------------HHHHHHHHHHHcC-CCCEEEEEEcccccCccccccccccccCCHHHHHHHH
Confidence 99853 223321 2489999999998 9999887632111111 1 1244577
Q ss_pred HHhCcEEEEEeecCCC
Q 044601 161 EKIGLTLQEVVPFCKQ 176 (213)
Q Consensus 161 ~~~gl~l~~~~~F~~~ 176 (213)
+++||.+.+...+.++
T Consensus 133 ~~~Gf~~~~~~~~~~~ 148 (224)
T smart00828 133 ARNNLRVVEGVDASLE 148 (224)
T ss_pred HHCCCeEEEeEECcHh
Confidence 8899999999888654
No 21
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=96.76 E-value=0.015 Score=54.50 Aligned_cols=133 Identities=15% Similarity=0.208 Sum_probs=89.6
Q ss_pred CCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCCcc
Q 044601 15 KQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTHKF 94 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~~F 94 (213)
...+|=||=|+=.|++.||+.+ +..+++|.-.... .+.. +..++....-.++. +...||..+...+ ..+.+
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~-~i~~----a~~ka~~~gL~NV~-~i~~DA~~ll~~~--~~~s~ 193 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTP-SIEQ----VLKQIELLNLKNLL-IINYDARLLLELL--PSNSV 193 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHH-HHHH----HHHHHHHcCCCcEE-EEECCHHHhhhhC--CCCce
Confidence 4678889988888899999887 4678888766532 2221 33333222111343 4467888765443 46889
Q ss_pred cEEEEcCCcCCCcccccchHHHHhhH-HHHHHHHHHHHhhcccCCCeEEEEeccCCCCCcccHHhHHHHhCcEE
Q 044601 95 DRVIYNFPHVGFIFRENSYCQIQLNK-ELVKGFLRNAKLLLKEENGEIHVTHKEGDPYNKWELVKKAEKIGLTL 167 (213)
Q Consensus 95 DrIiFNFPH~G~~~~e~~~~~i~~n~-~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py~~W~i~~lA~~~gl~l 167 (213)
|+|+.|||-.-.+. .|| .....|+..+..+|+ ++|.+++.-.. .+|-.|-++.+.+...+..
T Consensus 194 D~I~lnFPdPW~Kk---------rHRRlv~~~fL~e~~RvLk-pGG~l~l~TD~-~~y~~~~~e~~~~~~~~~~ 256 (390)
T PRK14121 194 EKIFVHFPVPWDKK---------PHRRVISEDFLNEALRVLK-PGGTLELRTDS-ELYFEFSLELFLKLPKAKI 256 (390)
T ss_pred eEEEEeCCCCcccc---------chhhccHHHHHHHHHHHcC-CCcEEEEEEEC-HHHHHHHHHHHHhCCCcee
Confidence 99999998554331 223 346889999999998 99999998754 4577777777766655554
No 22
>PRK14967 putative methyltransferase; Provisional
Probab=96.76 E-value=0.1 Score=44.24 Aligned_cols=142 Identities=18% Similarity=0.135 Sum_probs=83.6
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccC
Q 044601 12 YSSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRT 91 (213)
Q Consensus 12 y~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~ 91 (213)
..++++||-+|=|.=.++..+++. + ...+++.-.+. + ..+ -+..|++... ..+.+ +.-|+... +..
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~-~~~v~~vD~s~-~-~l~---~a~~n~~~~~-~~~~~-~~~d~~~~-----~~~ 99 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-G-AGSVTAVDISR-R-AVR---SARLNALLAG-VDVDV-RRGDWARA-----VEF 99 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-C-CCeEEEEECCH-H-HHH---HHHHHHHHhC-CeeEE-EECchhhh-----ccC
Confidence 356789999999987777777764 3 34676665553 2 222 2445554332 12333 33454432 234
Q ss_pred CcccEEEEcCCcCCCcccccch------HHH-HhhHHHHHHHHHHHHhhcccCCCeEEEEeccCCCCCcccHHhHHHHhC
Q 044601 92 HKFDRVIYNFPHVGFIFRENSY------CQI-QLNKELVKGFLRNAKLLLKEENGEIHVTHKEGDPYNKWELVKKAEKIG 164 (213)
Q Consensus 92 ~~FDrIiFNFPH~G~~~~e~~~------~~i-~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py~~W~i~~lA~~~g 164 (213)
..||.||.|-|........... ... .....++..|+..|..+|+ ++|.+.+...+-. +.-++..+.+..|
T Consensus 100 ~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk-~gG~l~~~~~~~~--~~~~~~~~l~~~g 176 (223)
T PRK14967 100 RPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLA-PGGSLLLVQSELS--GVERTLTRLSEAG 176 (223)
T ss_pred CCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcC-CCcEEEEEEeccc--CHHHHHHHHHHCC
Confidence 6899999997765421100000 000 1234568899999999998 9999988765432 2235666777778
Q ss_pred cEEEEE
Q 044601 165 LTLQEV 170 (213)
Q Consensus 165 l~l~~~ 170 (213)
+.+...
T Consensus 177 ~~~~~~ 182 (223)
T PRK14967 177 LDAEVV 182 (223)
T ss_pred CCeEEE
Confidence 755443
No 23
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=96.72 E-value=0.086 Score=46.90 Aligned_cols=135 Identities=20% Similarity=0.186 Sum_probs=80.7
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhC-CCEEEEeeeccccCCCccccCC
Q 044601 14 SKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEER-GCLVFYGVDAMQMSQHFFLRTH 92 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~-g~~V~~gVDAt~L~~~~~l~~~ 92 (213)
+..+||=+|=|.=.++.+|++... ...++|.-.+ .+.+.. +..|++...-. .+.+ ..-|+.+ . +...
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~-~~~v~avDis-~~al~~----A~~n~~~~~~~~~i~~-~~~D~~~---~--~~~~ 188 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFP-EAEVDAVDIS-PDALAV----AEINIERHGLEDRVTL-IQSDLFA---A--LPGR 188 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCC-CCEEEEEECC-HHHHHH----HHHHHHHcCCCCcEEE-EECchhh---c--cCCC
Confidence 357899999999999999998763 4566655443 333322 55665543211 1333 3335532 1 2245
Q ss_pred cccEEEEcCCcCCCcccccchHHHHh-----------hHHHHHHHHHHHHhhcccCCCeEEEEeccCCCCCcccHHhHHH
Q 044601 93 KFDRVIYNFPHVGFIFRENSYCQIQL-----------NKELVKGFLRNAKLLLKEENGEIHVTHKEGDPYNKWELVKKAE 161 (213)
Q Consensus 93 ~FDrIiFNFPH~G~~~~e~~~~~i~~-----------n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py~~W~i~~lA~ 161 (213)
+||.||.|=|-+...........++. .-.+++.++..|.++|+ ++|.+.+.+-..+ . .+..+..
T Consensus 189 ~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~-~gG~l~~e~g~~~---~-~v~~~~~ 263 (284)
T TIGR03533 189 KYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLN-ENGVLVVEVGNSM---E-ALEEAYP 263 (284)
T ss_pred CccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcC-CCCEEEEEECcCH---H-HHHHHHH
Confidence 79999999998764321111111111 12567889999999998 9999988774211 1 4555555
Q ss_pred HhCc
Q 044601 162 KIGL 165 (213)
Q Consensus 162 ~~gl 165 (213)
..|+
T Consensus 264 ~~~~ 267 (284)
T TIGR03533 264 DVPF 267 (284)
T ss_pred hCCC
Confidence 5553
No 24
>PRK04457 spermidine synthase; Provisional
Probab=96.70 E-value=0.0091 Score=52.57 Aligned_cols=115 Identities=17% Similarity=0.115 Sum_probs=73.7
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHH-hCCCEEEEeeeccccCCCccccCC
Q 044601 14 SKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELE-ERGCLVFYGVDAMQMSQHFFLRTH 92 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~-~~g~~V~~gVDAt~L~~~~~l~~~ 92 (213)
...+||.+|=|.-+++..|++..+ ...|++--+|. ++.+ -+.++...-. .-.++|+.+ ||.+.-... ..
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p-~~~v~~VEidp--~vi~---~A~~~f~~~~~~~rv~v~~~-Da~~~l~~~---~~ 135 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLP-DTRQTAVEINP--QVIA---VARNHFELPENGERFEVIEA-DGAEYIAVH---RH 135 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCC-CCeEEEEECCH--HHHH---HHHHHcCCCCCCCceEEEEC-CHHHHHHhC---CC
Confidence 468999999999999999998874 56777776663 2332 1233322111 124566655 776542221 35
Q ss_pred cccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCC
Q 044601 93 KFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGD 149 (213)
Q Consensus 93 ~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~ 149 (213)
+||.|+.|..+.... . .......||+.|+.+|+ ++|.+.|.+-...
T Consensus 136 ~yD~I~~D~~~~~~~-~---------~~l~t~efl~~~~~~L~-pgGvlvin~~~~~ 181 (262)
T PRK04457 136 STDVILVDGFDGEGI-I---------DALCTQPFFDDCRNALS-SDGIFVVNLWSRD 181 (262)
T ss_pred CCCEEEEeCCCCCCC-c---------cccCcHHHHHHHHHhcC-CCcEEEEEcCCCc
Confidence 799999985432211 0 01113699999999998 9999999765443
No 25
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.70 E-value=0.039 Score=55.07 Aligned_cols=157 Identities=16% Similarity=0.151 Sum_probs=94.1
Q ss_pred cccccCCCCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCE-EEEeeeccccC
Q 044601 6 EKWSNHYSSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCL-VFYGVDAMQMS 84 (213)
Q Consensus 6 ~k~~~~y~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~-V~~gVDAt~L~ 84 (213)
-+|+..+.++++||=+|=|.=.||+++++. | +..| |+.|..+...+ -+..|++...-...+ -+..-|+.+.-
T Consensus 530 R~~~~~~~~g~rVLDlf~gtG~~sl~aa~~-G-a~~V--~~vD~s~~al~---~a~~N~~~ng~~~~~v~~i~~D~~~~l 602 (702)
T PRK11783 530 RRMIGQMAKGKDFLNLFAYTGTASVHAALG-G-AKST--TTVDMSNTYLE---WAERNFALNGLSGRQHRLIQADCLAWL 602 (702)
T ss_pred HHHHHHhcCCCeEEEcCCCCCHHHHHHHHC-C-CCEE--EEEeCCHHHHH---HHHHHHHHhCCCccceEEEEccHHHHH
Confidence 367778888999999888887888888764 3 3344 44563333333 256666443211111 24455665432
Q ss_pred CCccccCCcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCCCCCcccHHhHHHHhC
Q 044601 85 QHFFLRTHKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGDPYNKWELVKKAEKIG 164 (213)
Q Consensus 85 ~~~~l~~~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py~~W~i~~lA~~~g 164 (213)
+.. ..+||.||.|-|-.+.. +. ...+..-..-....+..|..+|+ ++|.+.++.+... ... ....+.++|
T Consensus 603 ~~~---~~~fDlIilDPP~f~~~-~~--~~~~~~~~~~y~~l~~~a~~lL~-~gG~l~~~~~~~~-~~~--~~~~~~~~g 672 (702)
T PRK11783 603 KEA---REQFDLIFIDPPTFSNS-KR--MEDSFDVQRDHVALIKDAKRLLR-PGGTLYFSNNKRG-FKM--DEEGLAKLG 672 (702)
T ss_pred HHc---CCCcCEEEECCCCCCCC-Cc--cchhhhHHHHHHHHHHHHHHHcC-CCCEEEEEeCCcc-CCh--hHHHHHhCC
Confidence 111 46799999999987642 11 00111122334456777899998 9999888776432 222 256777888
Q ss_pred cEEEEEeec-CCCCCC
Q 044601 165 LTLQEVVPF-CKQDYP 179 (213)
Q Consensus 165 l~l~~~~~F-~~~~yP 179 (213)
+.+.....+ .+.|+|
T Consensus 673 ~~~~~i~~~~~~~Dhp 688 (702)
T PRK11783 673 LKAEEITAKTLPPDFA 688 (702)
T ss_pred CeEEEEecCCCCCCCC
Confidence 888766543 355665
No 26
>PRK01581 speE spermidine synthase; Validated
Probab=96.67 E-value=0.025 Score=52.76 Aligned_cols=146 Identities=18% Similarity=0.259 Sum_probs=91.1
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCH-HHHHhhcchHHH-HHHHHHhCCCEEEEeeeccccCCCcccc
Q 044601 13 SSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQ-ETIANKYSNAVD-NVRELEERGCLVFYGVDAMQMSQHFFLR 90 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~-~~l~~kY~~a~~-ni~~L~~~g~~V~~gVDAt~L~~~~~l~ 90 (213)
.+..+||++|=|+=+.++.++++ .+..+|++--+|.+ -++.++||.-.. |-..+..-.++|+ --||.+.-.. .
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vv-i~Da~~fL~~---~ 223 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVH-VCDAKEFLSS---P 223 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEE-ECcHHHHHHh---c
Confidence 34679999999988877777764 34568998888853 234444433210 1112223344444 3455552211 2
Q ss_pred CCcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCCCCCc----ccHHhHHHHhCcE
Q 044601 91 THKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGDPYNK----WELVKKAEKIGLT 166 (213)
Q Consensus 91 ~~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py~~----W~i~~lA~~~gl~ 166 (213)
..+||.||-++|..-... .++..-..||+.++..|+ |+|.+.+.. +.|... |.+...-+++++.
T Consensus 224 ~~~YDVIIvDl~DP~~~~---------~~~LyT~EFy~~~~~~Lk-PgGV~V~Qs--~sp~~~~~~~~~i~~tL~~af~~ 291 (374)
T PRK01581 224 SSLYDVIIIDFPDPATEL---------LSTLYTSELFARIATFLT-EDGAFVCQS--NSPADAPLVYWSIGNTIEHAGLT 291 (374)
T ss_pred CCCccEEEEcCCCccccc---------hhhhhHHHHHHHHHHhcC-CCcEEEEec--CChhhhHHHHHHHHHHHHHhCCc
Confidence 467999999998753211 222334789999999998 999876653 334433 8888888888887
Q ss_pred EEEEeecCC
Q 044601 167 LQEVVPFCK 175 (213)
Q Consensus 167 l~~~~~F~~ 175 (213)
...-.-+-|
T Consensus 292 v~~y~t~vP 300 (374)
T PRK01581 292 VKSYHTIVP 300 (374)
T ss_pred eEEEEEecC
Confidence 776555544
No 27
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=96.63 E-value=0.013 Score=51.51 Aligned_cols=110 Identities=15% Similarity=0.137 Sum_probs=69.7
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHH----hCCCEEEEeeeccccCCCccc
Q 044601 14 SKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELE----ERGCLVFYGVDAMQMSQHFFL 89 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~----~~g~~V~~gVDAt~L~~~~~l 89 (213)
+.++||.+|-|+-+++..++++. +..++++.-.|.. +.+ .+.+++..+. .-.+.++. -|+-+.-...
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~--vi~---~a~~~~~~~~~~~~~~~v~i~~-~D~~~~l~~~-- 142 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEK--VIE---LSKKFLPSLAGSYDDPRVDLQI-DDGFKFLADT-- 142 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHH--HHH---HHHHHhHhhcccccCCceEEEE-CchHHHHHhC--
Confidence 35699999999999999998764 3567888877732 222 1333333332 22344443 4554321111
Q ss_pred cCCcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEE
Q 044601 90 RTHKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVT 144 (213)
Q Consensus 90 ~~~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvT 144 (213)
..+||.||.+.|..-.. ........||+.++.+|+ ++|.+.+.
T Consensus 143 -~~~yDvIi~D~~~~~~~----------~~~l~~~ef~~~~~~~L~-pgG~lv~~ 185 (270)
T TIGR00417 143 -ENTFDVIIVDSTDPVGP----------AETLFTKEFYELLKKALN-EDGIFVAQ 185 (270)
T ss_pred -CCCccEEEEeCCCCCCc----------ccchhHHHHHHHHHHHhC-CCcEEEEc
Confidence 36899999998754321 111234789999999998 99998776
No 28
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=96.63 E-value=0.059 Score=45.67 Aligned_cols=140 Identities=20% Similarity=0.157 Sum_probs=83.3
Q ss_pred CCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCCcc
Q 044601 15 KQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTHKF 94 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~~F 94 (213)
..+||=+|=|.=.++.+|++... ...+++.-.+ ....+ .+..|++...-..+. +..-|+.+. +...+|
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~~-~~~v~~iD~~--~~~~~---~a~~~~~~~~~~~~~-~~~~d~~~~-----~~~~~f 155 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKERP-DARVTAVDIS--PEALA---VARKNAARLGLDNVT-FLQSDWFEP-----LPGGKF 155 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHCC-CCEEEEEECC--HHHHH---HHHHHHHHcCCCeEE-EEECchhcc-----CcCCce
Confidence 45899998888888999988763 4455554433 33332 255555443221222 233454431 225789
Q ss_pred cEEEEcCCcCCCcccccchHHHHh------------hHHHHHHHHHHHHhhcccCCCeEEEEeccCCCCCcccHHhHHHH
Q 044601 95 DRVIYNFPHVGFIFRENSYCQIQL------------NKELVKGFLRNAKLLLKEENGEIHVTHKEGDPYNKWELVKKAEK 162 (213)
Q Consensus 95 DrIiFNFPH~G~~~~e~~~~~i~~------------n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py~~W~i~~lA~~ 162 (213)
|.|+-|.|-............+.. ....+..|++.+..+|+ ++|.+.+..- +...-.+..+..+
T Consensus 156 D~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~-~gG~~~~~~~---~~~~~~~~~~l~~ 231 (251)
T TIGR03534 156 DLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLK-PGGWLLLEIG---YDQGEAVRALFEA 231 (251)
T ss_pred eEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcc-cCCEEEEEEC---ccHHHHHHHHHHh
Confidence 999999998764211111111111 12345689999999998 9999888652 1233456777778
Q ss_pred hCcEEEEE
Q 044601 163 IGLTLQEV 170 (213)
Q Consensus 163 ~gl~l~~~ 170 (213)
.|+..+..
T Consensus 232 ~gf~~v~~ 239 (251)
T TIGR03534 232 AGFADVET 239 (251)
T ss_pred CCCCceEE
Confidence 88865544
No 29
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=96.57 E-value=0.065 Score=47.02 Aligned_cols=144 Identities=17% Similarity=0.093 Sum_probs=93.7
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCC
Q 044601 13 SSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTH 92 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~ 92 (213)
.++++||=+|=|-=.+|..|++..+....|+| .|......+ .+.+|++.+.-.. ..+..-|++.+... ..
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a--~D~~~~~l~---~~~~n~~~~g~~~-v~~~~~D~~~~~~~----~~ 139 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVA--NEFSKSRTK---VLIANINRCGVLN-VAVTNFDGRVFGAA----VP 139 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEE--EcCCHHHHH---HHHHHHHHcCCCc-EEEecCCHHHhhhh----cc
Confidence 46789999999988888888887754445554 454333333 3566776553222 23455677765432 24
Q ss_pred cccEEEEcCCcCCCcccc--------cchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCCCC-CcccHHhHHHH-
Q 044601 93 KFDRVIYNFPHVGFIFRE--------NSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGDPY-NKWELVKKAEK- 162 (213)
Q Consensus 93 ~FDrIiFNFPH~G~~~~e--------~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py-~~W~i~~lA~~- 162 (213)
.||+|+.|=|+.|.+..- ...+.+.....+-...+.+|..+|+ ++|.+..+-|+-.|- +...|..+.++
T Consensus 140 ~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lk-pgG~lvYstcs~~~~Ene~vv~~~l~~~ 218 (264)
T TIGR00446 140 KFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALK-PGGVLVYSTCSLEPEENEAVVDYLLEKR 218 (264)
T ss_pred CCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEeCCCChHHHHHHHHHHHHhC
Confidence 599999999999853210 0223455556677889999999998 999987777765443 56777775544
Q ss_pred hCcEE
Q 044601 163 IGLTL 167 (213)
Q Consensus 163 ~gl~l 167 (213)
.++.+
T Consensus 219 ~~~~~ 223 (264)
T TIGR00446 219 PDVVE 223 (264)
T ss_pred CCcEE
Confidence 35543
No 30
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=96.56 E-value=0.096 Score=49.38 Aligned_cols=146 Identities=14% Similarity=0.117 Sum_probs=94.2
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCC--EEEEeeeccccCCCcccc
Q 044601 13 SSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGC--LVFYGVDAMQMSQHFFLR 90 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~--~V~~gVDAt~L~~~~~l~ 90 (213)
.++.+||=+|=|-=..|..+++..+....|+|.=.+ ++-+ + .+.+|++.+ |+ ......|++.+....
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis-~~rl-~---~~~~n~~r~---g~~~v~~~~~Da~~l~~~~--- 304 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDIS-REKI-Q---LVEKHAKRL---KLSSIEIKIADAERLTEYV--- 304 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECC-HHHH-H---HHHHHHHHc---CCCeEEEEECchhhhhhhh---
Confidence 456788877777667777777776545567665443 3222 2 355666544 43 234556888764322
Q ss_pred CCcccEEEEcCCcCCCccccc--------chHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCCC-CCcccHHhH-H
Q 044601 91 THKFDRVIYNFPHVGFIFREN--------SYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGDP-YNKWELVKK-A 160 (213)
Q Consensus 91 ~~~FDrIiFNFPH~G~~~~e~--------~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~p-y~~W~i~~l-A 160 (213)
...||+|+-|=|..|.+.... ....+.....+-...+.+|..+|+ ++|.+..+-|+-.| -+..+|..+ +
T Consensus 305 ~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lk-pGG~LvYsTCs~~~eEne~vv~~fl~ 383 (431)
T PRK14903 305 QDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLE-KGGILLYSTCTVTKEENTEVVKRFVY 383 (431)
T ss_pred hccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEECCCChhhCHHHHHHHHH
Confidence 357999999999998643110 112333344566788999999998 99999888887654 466777774 4
Q ss_pred HHhCcEEEEE
Q 044601 161 EKIGLTLQEV 170 (213)
Q Consensus 161 ~~~gl~l~~~ 170 (213)
++.++.+...
T Consensus 384 ~~~~~~~~~~ 393 (431)
T PRK14903 384 EQKDAEVIDI 393 (431)
T ss_pred hCCCcEEecc
Confidence 4567776543
No 31
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=96.54 E-value=0.17 Score=41.32 Aligned_cols=138 Identities=15% Similarity=0.231 Sum_probs=83.9
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEE-EEeeeccccCCCccccC
Q 044601 13 SSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLV-FYGVDAMQMSQHFFLRT 91 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V-~~gVDAt~L~~~~~l~~ 91 (213)
.+..+||=+|=|+=.++.++++.. + .+++.-++ .+..+ .+..|++. .++.+ ....|+.+.. .
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~--~-~v~~vD~s--~~~~~---~a~~~~~~---~~~~~~~~~~d~~~~~------~ 80 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKG--K-CILTTDIN--PFAVK---ELRENAKL---NNVGLDVVMTDLFKGV------R 80 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcC--C-EEEEEECC--HHHHH---HHHHHHHH---cCCceEEEEccccccc------C
Confidence 345789999999888888888753 2 66666444 33333 25556643 33332 2344554421 2
Q ss_pred CcccEEEEcCCcCCCcccc--cchHHH-----HhhHHHHHHHHHHHHhhcccCCCeEEEEeccCCCCCcccHHhHHHHhC
Q 044601 92 HKFDRVIYNFPHVGFIFRE--NSYCQI-----QLNKELVKGFLRNAKLLLKEENGEIHVTHKEGDPYNKWELVKKAEKIG 164 (213)
Q Consensus 92 ~~FDrIiFNFPH~G~~~~e--~~~~~i-----~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py~~W~i~~lA~~~g 164 (213)
.+||.|+.|-|+....... ++..+. .....++..|+..+..+|+ ++|.+.+...... +.=.+..+.++.|
T Consensus 81 ~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-~gG~~~~~~~~~~--~~~~~~~~l~~~g 157 (179)
T TIGR00537 81 GKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILK-EGGRVQLIQSSLN--GEPDTFDKLDERG 157 (179)
T ss_pred CcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhC-CCCEEEEEEeccC--ChHHHHHHHHhCC
Confidence 4799999999986432110 111111 1245678999999999998 9999877654322 1223455667778
Q ss_pred cEEEEE
Q 044601 165 LTLQEV 170 (213)
Q Consensus 165 l~l~~~ 170 (213)
+.+...
T Consensus 158 f~~~~~ 163 (179)
T TIGR00537 158 FRYEIV 163 (179)
T ss_pred CeEEEE
Confidence 766544
No 32
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=96.47 E-value=0.051 Score=45.21 Aligned_cols=132 Identities=17% Similarity=0.117 Sum_probs=81.9
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCCc
Q 044601 14 SKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTHK 93 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~~ 93 (213)
++++||=||=|.=.+|..|++.. +...+ |..|...++.+ -+..|++.+.-.++++ ..-|+.++. ....
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~-~~~~V--~~iD~s~~~~~---~a~~~~~~~~~~~i~~-i~~d~~~~~-----~~~~ 109 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIAR-PELKL--TLLESNHKKVA---FLREVKAELGLNNVEI-VNGRAEDFQ-----HEEQ 109 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHC-CCCeE--EEEeCcHHHHH---HHHHHHHHhCCCCeEE-Eecchhhcc-----ccCC
Confidence 47899999987777777777554 34455 45564444333 1445555543223444 445777752 1468
Q ss_pred ccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCCCCCcccHHhHHHHhCcEEEEEeec
Q 044601 94 FDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGDPYNKWELVKKAEKIGLTLQEVVPF 173 (213)
Q Consensus 94 FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py~~W~i~~lA~~~gl~l~~~~~F 173 (213)
||.|+.|. ... +..+++.+..+|+ ++|.+.+.+-....-.-+.+++.++..|+..+++-+|
T Consensus 110 fD~I~s~~--~~~----------------~~~~~~~~~~~Lk-pgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 170 (181)
T TIGR00138 110 FDVITSRA--LAS----------------LNVLLELTLNLLK-VGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPLEVPPL 170 (181)
T ss_pred ccEEEehh--hhC----------------HHHHHHHHHHhcC-CCCEEEEEcCCCcHHHHHHHHHhhhhcCceEeecccc
Confidence 99999874 110 2256777789998 9999988763222223344555566689999999877
Q ss_pred CCC
Q 044601 174 CKQ 176 (213)
Q Consensus 174 ~~~ 176 (213)
...
T Consensus 171 ~~~ 173 (181)
T TIGR00138 171 TGP 173 (181)
T ss_pred CCC
Confidence 643
No 33
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=96.44 E-value=0.17 Score=43.95 Aligned_cols=140 Identities=14% Similarity=0.118 Sum_probs=80.6
Q ss_pred CCCCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCcccc
Q 044601 11 HYSSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLR 90 (213)
Q Consensus 11 ~y~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~ 90 (213)
...++++||-||=|.=-.+..+++..+....|++.-.. ++..+ .+.+|.+.+.-..++++ .-|+..+. +.
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s--~~~l~---~A~~~~~~~g~~~v~~~-~~d~~~l~----~~ 143 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMT--PEMLA---KARANARKAGYTNVEFR-LGEIEALP----VA 143 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCC--HHHHH---HHHHHHHHcCCCCEEEE-EcchhhCC----CC
Confidence 35678999999988844455566666655567775544 33333 24555544322233332 23555543 23
Q ss_pred CCcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEe--ccCC------------------C
Q 044601 91 THKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTH--KEGD------------------P 150 (213)
Q Consensus 91 ~~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl--~~~~------------------p 150 (213)
...||.|+.|.-..-... ....|+.+..+|+ |+|.+.++= ..+. .
T Consensus 144 ~~~fD~Vi~~~v~~~~~d--------------~~~~l~~~~r~Lk-pGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (272)
T PRK11873 144 DNSVDVIISNCVINLSPD--------------KERVFKEAFRVLK-PGGRFAISDVVLRGELPEEIRNDAELYAGCVAGA 208 (272)
T ss_pred CCceeEEEEcCcccCCCC--------------HHHHHHHHHHHcC-CCcEEEEEEeeccCCCCHHHHHhHHHHhccccCC
Confidence 468999998853211100 1256777889998 999988851 1111 1
Q ss_pred CCcccHHhHHHHhCcEEEEEeecCC
Q 044601 151 YNKWELVKKAEKIGLTLQEVVPFCK 175 (213)
Q Consensus 151 y~~W~i~~lA~~~gl~l~~~~~F~~ 175 (213)
+..-.+..+-+.+|+...+......
T Consensus 209 ~~~~e~~~~l~~aGf~~v~i~~~~~ 233 (272)
T PRK11873 209 LQEEEYLAMLAEAGFVDITIQPKRE 233 (272)
T ss_pred CCHHHHHHHHHHCCCCceEEEeccc
Confidence 1223455677788988776655443
No 34
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=96.42 E-value=0.11 Score=48.70 Aligned_cols=146 Identities=17% Similarity=0.102 Sum_probs=92.2
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCC
Q 044601 13 SSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTH 92 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~ 92 (213)
.++++||=+|=|-=+.+..+++..+ +..|+| .|......+ .+.+|++.+.- .++ ....|++++.... ...
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a--~D~s~~~l~---~~~~n~~~~g~-~~~-~~~~D~~~~~~~~--~~~ 312 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAP-QAQVVA--LDIDAQRLE---RVRENLQRLGL-KAT-VIVGDARDPAQWW--DGQ 312 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcC-CCEEEE--EeCCHHHHH---HHHHHHHHcCC-CeE-EEEcCcccchhhc--ccC
Confidence 4678999998888888888888763 345554 453333333 25556544321 233 4556888764332 246
Q ss_pred cccEEEEcCCcCCCccc---cc-----chHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCCC-CCcccHHhHHH-H
Q 044601 93 KFDRVIYNFPHVGFIFR---EN-----SYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGDP-YNKWELVKKAE-K 162 (213)
Q Consensus 93 ~FDrIiFNFPH~G~~~~---e~-----~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~p-y~~W~i~~lA~-~ 162 (213)
.||+|+.|=|..|.+.. .+ ....+.....+...++..|..+|+ ++|.+.++-|.-.| -+.-+|..+.+ .
T Consensus 313 ~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~Lk-pGG~lvystcs~~~~Ene~~v~~~l~~~ 391 (427)
T PRK10901 313 PFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLK-PGGTLLYATCSILPEENEQQIKAFLARH 391 (427)
T ss_pred CCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEeCCCChhhCHHHHHHHHHhC
Confidence 79999999999874311 00 112344445667899999999998 99998887775433 35556665444 4
Q ss_pred hCcEEEE
Q 044601 163 IGLTLQE 169 (213)
Q Consensus 163 ~gl~l~~ 169 (213)
.++.+..
T Consensus 392 ~~~~~~~ 398 (427)
T PRK10901 392 PDAELLD 398 (427)
T ss_pred CCCEEec
Confidence 4676544
No 35
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=96.34 E-value=0.064 Score=44.20 Aligned_cols=114 Identities=18% Similarity=0.118 Sum_probs=74.5
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCc----
Q 044601 12 YSSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHF---- 87 (213)
Q Consensus 12 y~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~---- 87 (213)
..++++||-+|=|.=.++..+++.......|+|.-.+.. . +..++. .+..|+++.....
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~--~--------------~~~~i~-~~~~d~~~~~~~~~l~~ 92 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPM--K--------------PIENVD-FIRGDFTDEEVLNKIRE 92 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEecccc--c--------------cCCCce-EEEeeCCChhHHHHHHH
Confidence 367899999999998999999888754567888766532 1 113444 3445776542100
Q ss_pred cccCCcccEEEEcC-CcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEecc
Q 044601 88 FLRTHKFDRVIYNF-PHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKE 147 (213)
Q Consensus 88 ~l~~~~FDrIiFNF-PH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~ 147 (213)
.+....||.|+-|. ||..+...- .......++..++..+..+|+ ++|.+.|...+
T Consensus 93 ~~~~~~~D~V~~~~~~~~~g~~~~----~~~~~~~~~~~~l~~~~~~Lk-pgG~lvi~~~~ 148 (188)
T TIGR00438 93 RVGDDKVDVVMSDAAPNISGYWDI----DHLRSIDLVELALDIAKEVLK-PKGNFVVKVFQ 148 (188)
T ss_pred HhCCCCccEEEcCCCCCCCCCccc----cHHHHHHHHHHHHHHHHHHcc-CCCEEEEEEcc
Confidence 12356799999987 554321110 112234567889999999998 99999997543
No 36
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=96.32 E-value=0.15 Score=48.07 Aligned_cols=143 Identities=15% Similarity=0.096 Sum_probs=94.6
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCC--EEEEeeeccccCCCcccc
Q 044601 13 SSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGC--LVFYGVDAMQMSQHFFLR 90 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~--~V~~gVDAt~L~~~~~l~ 90 (213)
.++++||=+|-|-=.+|..|++..+....|+ +.|..++..+ .+.+|++.+ |+ .....-|+.++. .
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~--avD~s~~~l~---~~~~~~~~~---g~~~v~~~~~Da~~~~-----~ 315 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQIT--AVDRYPQKLE---KIRSHASAL---GITIIETIEGDARSFS-----P 315 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEE--EEECCHHHHH---HHHHHHHHh---CCCeEEEEeCcccccc-----c
Confidence 4578999999988888888888765444554 4564444444 255566543 44 234456776653 2
Q ss_pred CCcccEEEEcCCcCCCcccc--------cchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCCCC-CcccHHhHHH
Q 044601 91 THKFDRVIYNFPHVGFIFRE--------NSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGDPY-NKWELVKKAE 161 (213)
Q Consensus 91 ~~~FDrIiFNFPH~G~~~~e--------~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py-~~W~i~~lA~ 161 (213)
...||+|+.+=|+.|.+.-. ...+.+.....+-..++.+|..+|+ ++|.+...-|+-.|- +..+|..+.+
T Consensus 316 ~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lk-pgG~lvystcs~~~~Ene~~v~~~l~ 394 (445)
T PRK14904 316 EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLK-PGGVLVYATCSIEPEENELQIEAFLQ 394 (445)
T ss_pred CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcC-CCcEEEEEeCCCChhhHHHHHHHHHH
Confidence 35799999999999864210 0123344445566789999999998 999999888876553 5778877555
Q ss_pred Hh-CcEEEE
Q 044601 162 KI-GLTLQE 169 (213)
Q Consensus 162 ~~-gl~l~~ 169 (213)
.+ ++.+..
T Consensus 395 ~~~~~~~~~ 403 (445)
T PRK14904 395 RHPEFSAEP 403 (445)
T ss_pred hCCCCEEec
Confidence 44 666543
No 37
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=96.30 E-value=0.032 Score=49.64 Aligned_cols=129 Identities=27% Similarity=0.409 Sum_probs=76.6
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCC----CEEEEeeeccccCCCc
Q 044601 12 YSSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERG----CLVFYGVDAMQMSQHF 87 (213)
Q Consensus 12 y~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g----~~V~~gVDAt~L~~~~ 87 (213)
-+++++||=+|=|-=+++.-+|+++| ++|++-++. +++... +. +.+++.| +.|. -.|..++.
T Consensus 60 l~~G~~vLDiGcGwG~~~~~~a~~~g--~~v~gitlS-~~Q~~~----a~---~~~~~~gl~~~v~v~-~~D~~~~~--- 125 (273)
T PF02353_consen 60 LKPGDRVLDIGCGWGGLAIYAAERYG--CHVTGITLS-EEQAEY----AR---ERIREAGLEDRVEVR-LQDYRDLP--- 125 (273)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH----EEEEEES--HHHHHH----HH---HHHHCSTSSSTEEEE-ES-GGG-----
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcC--cEEEEEECC-HHHHHH----HH---HHHHhcCCCCceEEE-EeeccccC---
Confidence 45789999999999999999999984 678877764 332221 33 3344445 3443 35665543
Q ss_pred cccCCcccEEEEc--CCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEE---eccCC-------------
Q 044601 88 FLRTHKFDRVIYN--FPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVT---HKEGD------------- 149 (213)
Q Consensus 88 ~l~~~~FDrIiFN--FPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvT---l~~~~------------- 149 (213)
.+||+||-- |-|+|.+. +..||+.+..+|+ |+|.+.|. .....
T Consensus 126 ----~~fD~IvSi~~~Ehvg~~~--------------~~~~f~~~~~~Lk-pgG~~~lq~i~~~~~~~~~~~~~~~~~i~ 186 (273)
T PF02353_consen 126 ----GKFDRIVSIEMFEHVGRKN--------------YPAFFRKISRLLK-PGGRLVLQTITHRDPPYHAERRSSSDFIR 186 (273)
T ss_dssp -----S-SEEEEESEGGGTCGGG--------------HHHHHHHHHHHSE-TTEEEEEEEEEE--HHHHHCTTCCCHHHH
T ss_pred ----CCCCEEEEEechhhcChhH--------------HHHHHHHHHHhcC-CCcEEEEEecccccccchhhcCCCceEEE
Confidence 289999876 89998531 3479999999998 99997543 22110
Q ss_pred ----CC----CcccHHhHHHHhCcEEEEEeec
Q 044601 150 ----PY----NKWELVKKAEKIGLTLQEVVPF 173 (213)
Q Consensus 150 ----py----~~W~i~~lA~~~gl~l~~~~~F 173 (213)
|. +.-.+...+...||.+.....+
T Consensus 187 kyiFPgg~lps~~~~~~~~~~~~l~v~~~~~~ 218 (273)
T PF02353_consen 187 KYIFPGGYLPSLSEILRAAEDAGLEVEDVENL 218 (273)
T ss_dssp HHTSTTS---BHHHHHHHHHHTT-EEEEEEE-
T ss_pred EeeCCCCCCCCHHHHHHHHhcCCEEEEEEEEc
Confidence 11 2234445567788888777655
No 38
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=96.25 E-value=0.094 Score=36.24 Aligned_cols=103 Identities=23% Similarity=0.238 Sum_probs=64.9
Q ss_pred eEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCCcccE
Q 044601 17 RILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTHKFDR 96 (213)
Q Consensus 17 ~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~~FDr 96 (213)
+||-+|.|.=.++..+++ . ....+++...+... ... +..+........+ -....|+.+... .....||.
T Consensus 1 ~ildig~G~G~~~~~~~~-~-~~~~~~~~d~~~~~--~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~d~ 69 (107)
T cd02440 1 RVLDLGCGTGALALALAS-G-PGARVTGVDISPVA--LEL---ARKAAAALLADNV-EVLKGDAEELPP---EADESFDV 69 (107)
T ss_pred CeEEEcCCccHHHHHHhc-C-CCCEEEEEeCCHHH--HHH---HHHHHhcccccce-EEEEcChhhhcc---ccCCceEE
Confidence 578899999999988887 3 35677777665322 111 1111111111122 234556666543 23467999
Q ss_pred EEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEE
Q 044601 97 VIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVT 144 (213)
Q Consensus 97 IiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvT 144 (213)
|+.|.|.-.. ......+++.+..+|+ ++|.+.++
T Consensus 70 i~~~~~~~~~-------------~~~~~~~l~~~~~~l~-~~g~~~~~ 103 (107)
T cd02440 70 IISDPPLHHL-------------VEDLARFLEEARRLLK-PGGVLVLT 103 (107)
T ss_pred EEEccceeeh-------------hhHHHHHHHHHHHHcC-CCCEEEEE
Confidence 9999986552 3455678888888998 99999887
No 39
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=96.24 E-value=0.014 Score=49.23 Aligned_cols=150 Identities=21% Similarity=0.289 Sum_probs=91.4
Q ss_pred cccccccCCCCCC-eEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccc
Q 044601 4 ETEKWSNHYSSKQ-RILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQ 82 (213)
Q Consensus 4 ~~~k~~~~y~~~~-~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~ 82 (213)
+...|-..|.+.. -+|=||=|+=-|..++|+.+ +..++++--.. .....+ +...+....-.++.+ ...||..
T Consensus 6 ~~~~~~~~f~~~~~l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~--~~~v~~---a~~~~~~~~l~Nv~~-~~~da~~ 78 (195)
T PF02390_consen 6 EPLDWQEIFGNDNPLILEIGCGKGEFLIELAKRN-PDINFIGIEIR--KKRVAK---ALRKAEKRGLKNVRF-LRGDARE 78 (195)
T ss_dssp CTTCHHHHHTSCCEEEEEET-TTSHHHHHHHHHS-TTSEEEEEES---HHHHHH---HHHHHHHHTTSSEEE-EES-CTT
T ss_pred CccCHHHHcCCCCCeEEEecCCCCHHHHHHHHHC-CCCCEEEEecc--hHHHHH---HHHHHHhhcccceEE-EEccHHH
Confidence 3445666676665 45567777777777788777 47899886544 222221 223333332234444 5569988
Q ss_pred cCCCccccCCcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCCCCCcccHHhHHH-
Q 044601 83 MSQHFFLRTHKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGDPYNKWELVKKAE- 161 (213)
Q Consensus 83 L~~~~~l~~~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py~~W~i~~lA~- 161 (213)
+-... +..+.+|.|..|||-.=.|.+. .++|.+=..|+.....+|+ ++|.|++.-- -.+|-.|-++.+.+
T Consensus 79 ~l~~~-~~~~~v~~i~i~FPDPWpK~rH------~krRl~~~~fl~~~~~~L~-~gG~l~~~TD-~~~y~~~~~~~~~~~ 149 (195)
T PF02390_consen 79 LLRRL-FPPGSVDRIYINFPDPWPKKRH------HKRRLVNPEFLELLARVLK-PGGELYFATD-VEEYAEWMLEQFEES 149 (195)
T ss_dssp HHHHH-STTTSEEEEEEES-----SGGG------GGGSTTSHHHHHHHHHHEE-EEEEEEEEES--HHHHHHHHHHHHHH
T ss_pred HHhhc-ccCCchheEEEeCCCCCcccch------hhhhcCCchHHHHHHHHcC-CCCEEEEEeC-CHHHHHHHHHHHHhc
Confidence 43332 2358899999999998765421 1333444678888889998 9999988874 45689999999988
Q ss_pred HhCcEEEE
Q 044601 162 KIGLTLQE 169 (213)
Q Consensus 162 ~~gl~l~~ 169 (213)
..++....
T Consensus 150 ~~~f~~~~ 157 (195)
T PF02390_consen 150 HPGFENIE 157 (195)
T ss_dssp STTEEEE-
T ss_pred CcCeEEcc
Confidence 47887764
No 40
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=96.18 E-value=0.17 Score=48.06 Aligned_cols=145 Identities=14% Similarity=0.064 Sum_probs=87.7
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccC
Q 044601 12 YSSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRT 91 (213)
Q Consensus 12 y~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~ 91 (213)
..+..+||=+|=|.=.++.+|++... ..+++|+-.+ + +..+ -+.+|++.+.. .+.++ .-|..... .. ..
T Consensus 249 l~~~~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS-~-~ALe---~AreNa~~~g~-rV~fi-~gDl~e~~--l~-~~ 317 (423)
T PRK14966 249 LPENGRVWDLGTGSGAVAVTVALERP-DAFVRASDIS-P-PALE---TARKNAADLGA-RVEFA-HGSWFDTD--MP-SE 317 (423)
T ss_pred cCCCCEEEEEeChhhHHHHHHHHhCC-CCEEEEEECC-H-HHHH---HHHHHHHHcCC-cEEEE-Ecchhccc--cc-cC
Confidence 44567999999998788888887763 5567666444 3 3333 26677664421 23332 33443321 11 13
Q ss_pred CcccEEEEcCCcCCCcccccchHHHH-----------hhHHHHHHHHHHHHhhcccCCCeEEEEeccCCCCCcccHHhHH
Q 044601 92 HKFDRVIYNFPHVGFIFRENSYCQIQ-----------LNKELVKGFLRNAKLLLKEENGEIHVTHKEGDPYNKWELVKKA 160 (213)
Q Consensus 92 ~~FDrIiFNFPH~G~~~~e~~~~~i~-----------~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py~~W~i~~lA 160 (213)
.+||.||.|=|.+.....+.....++ .-...++.++..+...|+ ++|.+.+.+-. ...-.++.+.
T Consensus 318 ~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~Lk-pgG~lilEiG~---~Q~e~V~~ll 393 (423)
T PRK14966 318 GKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLA-EGGFLLLEHGF---DQGAAVRGVL 393 (423)
T ss_pred CCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcC-CCcEEEEEECc---cHHHHHHHHH
Confidence 47999999999987421111111111 112456789999999998 99998776632 2334677788
Q ss_pred HHhCcEEEEEe
Q 044601 161 EKIGLTLQEVV 171 (213)
Q Consensus 161 ~~~gl~l~~~~ 171 (213)
+..|+...+..
T Consensus 394 ~~~Gf~~v~v~ 404 (423)
T PRK14966 394 AENGFSGVETL 404 (423)
T ss_pred HHCCCcEEEEE
Confidence 88888765553
No 41
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=96.12 E-value=0.11 Score=44.05 Aligned_cols=121 Identities=15% Similarity=0.126 Sum_probs=83.1
Q ss_pred cCCCCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCC---
Q 044601 10 NHYSSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQH--- 86 (213)
Q Consensus 10 ~~y~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~--- 86 (213)
..+.++++||=+|=|.=+|+..|++..+....|+|.=++.. . ...++.++.+ |++.+...
T Consensus 47 ~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~----~------------~~~~v~~i~~-D~~~~~~~~~i 109 (209)
T PRK11188 47 KLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM----D------------PIVGVDFLQG-DFRDELVLKAL 109 (209)
T ss_pred ccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc----c------------CCCCcEEEec-CCCChHHHHHH
Confidence 34577889999999999999999988765568888777541 1 1135666655 88875311
Q ss_pred -ccccCCcccEEEEcC-CcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCCCCC
Q 044601 87 -FFLRTHKFDRVIYNF-PHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGDPYN 152 (213)
Q Consensus 87 -~~l~~~~FDrIiFNF-PH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py~ 152 (213)
..+....||.|+-|. ||..+... ..+..+-.++...+..+..+|+ ++|.+.|.+..+..+.
T Consensus 110 ~~~~~~~~~D~V~S~~~~~~~g~~~----~d~~~~~~~~~~~L~~~~~~Lk-pGG~~vi~~~~~~~~~ 172 (209)
T PRK11188 110 LERVGDSKVQVVMSDMAPNMSGTPA----VDIPRAMYLVELALDMCRDVLA-PGGSFVVKVFQGEGFD 172 (209)
T ss_pred HHHhCCCCCCEEecCCCCccCCChH----HHHHHHHHHHHHHHHHHHHHcC-CCCEEEEEEecCcCHH
Confidence 012357899999998 88854211 1222233456789999999998 9999999887765433
No 42
>PRK00811 spermidine synthase; Provisional
Probab=96.09 E-value=0.1 Score=46.41 Aligned_cols=110 Identities=17% Similarity=0.211 Sum_probs=70.5
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHH-----hCCCEEEEeeeccccCCCcc
Q 044601 14 SKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELE-----ERGCLVFYGVDAMQMSQHFF 88 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~-----~~g~~V~~gVDAt~L~~~~~ 88 (213)
+.++||.+|=|+-+.+..++++.+ ..+|++--+|. ++.+. +.+++..+. .-.+++ +--||.+.-..
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~-~~~V~~VEid~--~vv~~---a~~~~~~~~~~~~~d~rv~v-~~~Da~~~l~~-- 146 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPS-VEKITLVEIDE--RVVEV---CRKYLPEIAGGAYDDPRVEL-VIGDGIKFVAE-- 146 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCC-CCEEEEEeCCH--HHHHH---HHHHhHHhccccccCCceEE-EECchHHHHhh--
Confidence 568999999999999999987643 45787777774 33331 344444432 223444 45566653322
Q ss_pred ccCCcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEE
Q 044601 89 LRTHKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVT 144 (213)
Q Consensus 89 l~~~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvT 144 (213)
...+||.||-+.+..-.. .....-..||+.++.+|+ ++|.+.+.
T Consensus 147 -~~~~yDvIi~D~~dp~~~----------~~~l~t~ef~~~~~~~L~-~gGvlv~~ 190 (283)
T PRK00811 147 -TENSFDVIIVDSTDPVGP----------AEGLFTKEFYENCKRALK-EDGIFVAQ 190 (283)
T ss_pred -CCCcccEEEECCCCCCCc----------hhhhhHHHHHHHHHHhcC-CCcEEEEe
Confidence 246899999986433211 111234689999999998 99976653
No 43
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=96.08 E-value=0.16 Score=44.87 Aligned_cols=150 Identities=25% Similarity=0.286 Sum_probs=104.4
Q ss_pred cccCCCCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHH--HHhCCCEEEEeeeccccCC
Q 044601 8 WSNHYSSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRE--LEERGCLVFYGVDAMQMSQ 85 (213)
Q Consensus 8 ~~~~y~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~--L~~~g~~V~~gVDAt~L~~ 85 (213)
|+..-. ..+||=+|=|+===++.||+... ...|++--++. ++.+ -|..|++. |+++ +. ++.-|...+.+
T Consensus 39 ~~~~~~-~~~IlDlGaG~G~l~L~la~r~~-~a~I~~VEiq~--~~a~---~A~~nv~ln~l~~r-i~-v~~~Di~~~~~ 109 (248)
T COG4123 39 FAPVPK-KGRILDLGAGNGALGLLLAQRTE-KAKIVGVEIQE--EAAE---MAQRNVALNPLEER-IQ-VIEADIKEFLK 109 (248)
T ss_pred hccccc-CCeEEEecCCcCHHHHHHhccCC-CCcEEEEEeCH--HHHH---HHHHHHHhCcchhc-ee-EehhhHHHhhh
Confidence 444444 89999999999888888887764 47888888773 3333 36777766 4442 32 55678888776
Q ss_pred CccccCCcccEEEEcCCcCCCccc--ccchHHHHhhH--HHHHHHHHHHHhhcccCCCeEEEEeccCCCCCcccHHhHHH
Q 044601 86 HFFLRTHKFDRVIYNFPHVGFIFR--ENSYCQIQLNK--ELVKGFLRNAKLLLKEENGEIHVTHKEGDPYNKWELVKKAE 161 (213)
Q Consensus 86 ~~~l~~~~FDrIiFNFPH~G~~~~--e~~~~~i~~n~--~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py~~W~i~~lA~ 161 (213)
... ..+||.||-|=|.--.... ++.-+.+-.+. -.+..+.+.|+.+|+ ++|.+.+-+. |-..=.|..+.+
T Consensus 110 ~~~--~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk-~~G~l~~V~r---~erl~ei~~~l~ 183 (248)
T COG4123 110 ALV--FASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLK-PGGRLAFVHR---PERLAEIIELLK 183 (248)
T ss_pred ccc--ccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHcc-CCCEEEEEec---HHHHHHHHHHHH
Confidence 654 3479999999999875433 33333343443 238899999999998 9999999884 445566777777
Q ss_pred HhCcEEEEEee
Q 044601 162 KIGLTLQEVVP 172 (213)
Q Consensus 162 ~~gl~l~~~~~ 172 (213)
..+|...+...
T Consensus 184 ~~~~~~k~i~~ 194 (248)
T COG4123 184 SYNLEPKRIQF 194 (248)
T ss_pred hcCCCceEEEE
Confidence 77776655543
No 44
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=96.03 E-value=0.051 Score=47.31 Aligned_cols=139 Identities=19% Similarity=0.313 Sum_probs=101.1
Q ss_pred ccccccCCCCCC--eEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchH-HHHHHHHHhCCC-EE-EEeee
Q 044601 5 TEKWSNHYSSKQ--RILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNA-VDNVRELEERGC-LV-FYGVD 79 (213)
Q Consensus 5 ~~k~~~~y~~~~--~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a-~~ni~~L~~~g~-~V-~~gVD 79 (213)
..+|-.-|.+.. -+|=||=|.=.|-..+|++. +..+.++--.- ... ..-++.+++.|+ .| +...|
T Consensus 37 ~~~~~~~f~~~~~pi~lEIGfG~G~~l~~~A~~n-P~~nfiGiEi~---------~~~v~~~l~k~~~~~l~Nlri~~~D 106 (227)
T COG0220 37 PGDWSALFGNNNAPIVLEIGFGMGEFLVEMAKKN-PEKNFLGIEIR---------VPGVAKALKKIKELGLKNLRLLCGD 106 (227)
T ss_pred cchHHHHhCCCCCcEEEEECCCCCHHHHHHHHHC-CCCCEEEEEEe---------hHHHHHHHHHHHHcCCCcEEEEcCC
Confidence 456777777764 67889999999999999997 47788885433 222 334566777777 55 78999
Q ss_pred ccccCCCccccCCcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCCCCCcccHHhH
Q 044601 80 AMQMSQHFFLRTHKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGDPYNKWELVKK 159 (213)
Q Consensus 80 At~L~~~~~l~~~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py~~W~i~~l 159 (213)
|+.+-.++. ..+..|+|..|||-.=.|.+.. ++|.+=..|++-...+|+ ++|.||+.--. +.|-.|.+...
T Consensus 107 A~~~l~~~~-~~~sl~~I~i~FPDPWpKkRH~------KRRl~~~~fl~~~a~~Lk-~gG~l~~aTD~-~~y~e~~~~~~ 177 (227)
T COG0220 107 AVEVLDYLI-PDGSLDKIYINFPDPWPKKRHH------KRRLTQPEFLKLYARKLK-PGGVLHFATDN-EEYFEWMMLEV 177 (227)
T ss_pred HHHHHHhcC-CCCCeeEEEEECCCCCCCcccc------ccccCCHHHHHHHHHHcc-CCCEEEEEecC-HHHHHHHHHHH
Confidence 999987764 3458999999999988764321 344445678888899998 99999998743 56778855554
Q ss_pred HHH
Q 044601 160 AEK 162 (213)
Q Consensus 160 A~~ 162 (213)
...
T Consensus 178 ~~~ 180 (227)
T COG0220 178 LEH 180 (227)
T ss_pred Hhc
Confidence 433
No 45
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=95.86 E-value=0.36 Score=42.60 Aligned_cols=132 Identities=24% Similarity=0.317 Sum_probs=67.1
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHH-HHHhCCCEE-EEeeeccccCCCccc-c
Q 044601 14 SKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVR-ELEERGCLV-FYGVDAMQMSQHFFL-R 90 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~-~L~~~g~~V-~~gVDAt~L~~~~~l-~ 90 (213)
.+++||+|||+|+ .|+|+|-. +.+.+|+.=-.| +.+.+ -|+ .-++.|..| .+--|..+ -++- -
T Consensus 44 ~gk~il~lGDDDL-tSlA~al~-~~~~~I~VvDiD--eRll~-------fI~~~a~~~gl~i~~~~~DlR~---~LP~~~ 109 (243)
T PF01861_consen 44 EGKRILFLGDDDL-TSLALALT-GLPKRITVVDID--ERLLD-------FINRVAEEEGLPIEAVHYDLRD---PLPEEL 109 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHH-T--SEEEEE-S---HHHHH-------HHHHHHHHHT--EEEE---TTS------TTT
T ss_pred cCCEEEEEcCCcH-HHHHHHhh-CCCCeEEEEEcC--HHHHH-------HHHHHHHHcCCceEEEEecccc---cCCHHH
Confidence 4789999999998 35555533 335677655555 22322 111 112335442 22233332 1111 1
Q ss_pred CCcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCCC-CCcc-cHHhHHHHhCcEEE
Q 044601 91 THKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGDP-YNKW-ELVKKAEKIGLTLQ 168 (213)
Q Consensus 91 ~~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~p-y~~W-~i~~lA~~~gl~l~ 168 (213)
.++||.++-+=|-+.-+ +.-|+.-+...|+.+++.+.+.+...++ ...| ++.....+.|+.+.
T Consensus 110 ~~~fD~f~TDPPyT~~G---------------~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~i~ 174 (243)
T PF01861_consen 110 RGKFDVFFTDPPYTPEG---------------LKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLVIT 174 (243)
T ss_dssp SS-BSEEEE---SSHHH---------------HHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS--EEE
T ss_pred hcCCCEEEeCCCCCHHH---------------HHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCCcCHH
Confidence 47899999999988731 3468888999998666577777766552 4567 78888889999998
Q ss_pred EEe-ecC
Q 044601 169 EVV-PFC 174 (213)
Q Consensus 169 ~~~-~F~ 174 (213)
+.. .|+
T Consensus 175 dii~~Fn 181 (243)
T PF01861_consen 175 DIIPDFN 181 (243)
T ss_dssp EEEEEEE
T ss_pred HHHhhhc
Confidence 874 454
No 46
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=95.81 E-value=0.49 Score=44.32 Aligned_cols=143 Identities=17% Similarity=0.103 Sum_probs=92.2
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEE-E--EeeeccccCCCccc
Q 044601 13 SSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLV-F--YGVDAMQMSQHFFL 89 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V-~--~gVDAt~L~~~~~l 89 (213)
.++++||=+|=|-=.+|..+++..+ ...|+|.-.+ ....+ .+.+|++. .|+.+ + ..-|+..+... .
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~--~~~l~---~~~~n~~r---~g~~~~v~~~~~d~~~~~~~--~ 305 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAP-QAQVVALDIH--EHRLK---RVYENLKR---LGLTIKAETKDGDGRGPSQW--A 305 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCC--HHHHH---HHHHHHHH---cCCCeEEEEecccccccccc--c
Confidence 4578999999998888999988775 4566665443 33332 24556654 45532 2 23344433221 1
Q ss_pred cCCcccEEEEcCCcCCCccc---cc-----chHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCCC-CCcccHHhHH
Q 044601 90 RTHKFDRVIYNFPHVGFIFR---EN-----SYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGDP-YNKWELVKKA 160 (213)
Q Consensus 90 ~~~~FDrIiFNFPH~G~~~~---e~-----~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~p-y~~W~i~~lA 160 (213)
....||+|+-+=|+.|.+.. .+ ..+.+..-..|-..++.+|..+|+ ++|.+.++-|+-.| -+..+|..+-
T Consensus 306 ~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lk-pgG~lvystcs~~~~Ene~~v~~~l 384 (426)
T TIGR00563 306 ENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLK-TGGTLVYATCSVLPEENSEQIKAFL 384 (426)
T ss_pred cccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcC-CCcEEEEEeCCCChhhCHHHHHHHH
Confidence 34679999999999986421 11 123444455677889999999998 99999988887654 4677787654
Q ss_pred H-HhCcEE
Q 044601 161 E-KIGLTL 167 (213)
Q Consensus 161 ~-~~gl~l 167 (213)
+ ..++.+
T Consensus 385 ~~~~~~~~ 392 (426)
T TIGR00563 385 QEHPDFPF 392 (426)
T ss_pred HhCCCCee
Confidence 4 445543
No 47
>PLN02366 spermidine synthase
Probab=95.81 E-value=0.12 Score=46.80 Aligned_cols=112 Identities=14% Similarity=0.211 Sum_probs=70.2
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCH-HHHHhhc-chHHHHHHHHHhCCCEEEEeeeccccCCCcccc
Q 044601 13 SSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQ-ETIANKY-SNAVDNVRELEERGCLVFYGVDAMQMSQHFFLR 90 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~-~~l~~kY-~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~ 90 (213)
.+.++||+||=|+-+.+..|+++ ....+|++--+|.. -++.++| |.. + ..+..-.++|+. -||-..-+.. .
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~--~-~~~~dpRv~vi~-~Da~~~l~~~--~ 162 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDL--A-VGFDDPRVNLHI-GDGVEFLKNA--P 162 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhh--c-cccCCCceEEEE-ChHHHHHhhc--c
Confidence 45789999999999999999876 33457888777742 2333332 211 1 123444555554 4654432211 1
Q ss_pred CCcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEE
Q 044601 91 THKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIH 142 (213)
Q Consensus 91 ~~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ih 142 (213)
..+||.||-+.+...+. .....-..||+.++..|+ ++|.+.
T Consensus 163 ~~~yDvIi~D~~dp~~~----------~~~L~t~ef~~~~~~~L~-pgGvlv 203 (308)
T PLN02366 163 EGTYDAIIVDSSDPVGP----------AQELFEKPFFESVARALR-PGGVVC 203 (308)
T ss_pred CCCCCEEEEcCCCCCCc----------hhhhhHHHHHHHHHHhcC-CCcEEE
Confidence 46799999987654321 122234689999999998 999863
No 48
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=95.71 E-value=0.79 Score=40.10 Aligned_cols=110 Identities=11% Similarity=0.120 Sum_probs=67.7
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCC-CEE-EEeeeccccCCCcccc
Q 044601 13 SSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERG-CLV-FYGVDAMQMSQHFFLR 90 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g-~~V-~~gVDAt~L~~~~~l~ 90 (213)
.++.+||=||=|.=.++..|++..++..+|+|.-.. +++.+. +.++.......+ ..| +..-|+.+|. +.
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S--~~ml~~---A~~r~~~~~~~~~~~i~~~~~d~~~lp----~~ 142 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFS--SEQLAV---AASRQELKAKSCYKNIEWIEGDATDLP----FD 142 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECC--HHHHHH---HHHHhhhhhhccCCCeEEEEcccccCC----CC
Confidence 467899999888877888899887544566655443 333332 222222111111 122 3455776653 34
Q ss_pred CCcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEec
Q 044601 91 THKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHK 146 (213)
Q Consensus 91 ~~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~ 146 (213)
.+.||.|+.+|-.--. .+ ...+++.+..+|+ |+|.+.|+-.
T Consensus 143 ~~sfD~V~~~~~l~~~-----------~d---~~~~l~ei~rvLk-pGG~l~i~d~ 183 (261)
T PLN02233 143 DCYFDAITMGYGLRNV-----------VD---RLKAMQEMYRVLK-PGSRVSILDF 183 (261)
T ss_pred CCCEeEEEEecccccC-----------CC---HHHHHHHHHHHcC-cCcEEEEEEC
Confidence 6789999987643221 01 2467899999998 9999877643
No 49
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=95.69 E-value=0.26 Score=44.39 Aligned_cols=135 Identities=19% Similarity=0.188 Sum_probs=80.9
Q ss_pred CeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhC-CCEEEEeeeccccCCCccccCCcc
Q 044601 16 QRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEER-GCLVFYGVDAMQMSQHFFLRTHKF 94 (213)
Q Consensus 16 ~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~-g~~V~~gVDAt~L~~~~~l~~~~F 94 (213)
.+||=+|-|.=.++.+|++... ...++|+-.+ .+.+. -+..|++.+.-. .+.++ .-|+.+ . +...+|
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p-~~~V~avDis-~~al~----~A~~n~~~~~l~~~i~~~-~~D~~~---~--l~~~~f 202 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFP-DAEVDAVDIS-PDALA----VAEINIERHGLEDRVTLI-ESDLFA---A--LPGRRY 202 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCC-CCEEEEEeCC-HHHHH----HHHHHHHHhCCCCcEEEE-ECchhh---h--CCCCCc
Confidence 6899999999999999998763 4566665444 33332 256676554321 13333 335432 1 123579
Q ss_pred cEEEEcCCcCCCcccccchHHHH-----------hhHHHHHHHHHHHHhhcccCCCeEEEEeccCCCCCcccHHhHHHHh
Q 044601 95 DRVIYNFPHVGFIFRENSYCQIQ-----------LNKELVKGFLRNAKLLLKEENGEIHVTHKEGDPYNKWELVKKAEKI 163 (213)
Q Consensus 95 DrIiFNFPH~G~~~~e~~~~~i~-----------~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py~~W~i~~lA~~~ 163 (213)
|.||.|=|.++..........++ .--.+.+.++..|..+|+ ++|.+.+.+-.. .. .+..+-...
T Consensus 203 DlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~-pgG~l~~E~g~~---~~-~~~~~~~~~ 277 (307)
T PRK11805 203 DLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLT-EDGVLVVEVGNS---RV-HLEEAYPDV 277 (307)
T ss_pred cEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcC-CCCEEEEEECcC---HH-HHHHHHhhC
Confidence 99999988887432111001111 012567889999999998 999998876432 11 244554455
Q ss_pred CcEE
Q 044601 164 GLTL 167 (213)
Q Consensus 164 gl~l 167 (213)
++..
T Consensus 278 ~~~~ 281 (307)
T PRK11805 278 PFTW 281 (307)
T ss_pred CCEE
Confidence 5544
No 50
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=95.69 E-value=0.15 Score=40.41 Aligned_cols=111 Identities=26% Similarity=0.307 Sum_probs=73.2
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCC
Q 044601 13 SSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTH 92 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~ 92 (213)
+++.+||=+|=|.=-++..|++.++++.++ +..|--+++.+. +..+++.+.-.. .-.+-.|++++.+. +. .
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i--~gvD~s~~~i~~---a~~~~~~~~~~n-i~~~~~d~~~l~~~--~~-~ 72 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKI--IGVDISEEMIEY---AKKRAKELGLDN-IEFIQGDIEDLPQE--LE-E 72 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEE--EEEESSHHHHHH---HHHHHHHTTSTT-EEEEESBTTCGCGC--SS-T
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEE--EEEECcHHHHHH---hhcccccccccc-cceEEeehhccccc--cC-C
Confidence 567899999999888889999766556665 455644555553 444444443322 34555788887655 23 7
Q ss_pred cccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEecc
Q 044601 93 KFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKE 147 (213)
Q Consensus 93 ~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~ 147 (213)
.||.|+.+.+---. .. ...+++.+..+|+ ++|.+.++...
T Consensus 73 ~~D~I~~~~~l~~~----------~~----~~~~l~~~~~~lk-~~G~~i~~~~~ 112 (152)
T PF13847_consen 73 KFDIIISNGVLHHF----------PD----PEKVLKNIIRLLK-PGGILIISDPN 112 (152)
T ss_dssp TEEEEEEESTGGGT----------SH----HHHHHHHHHHHEE-EEEEEEEEEEE
T ss_pred CeeEEEEcCchhhc----------cC----HHHHHHHHHHHcC-CCcEEEEEECC
Confidence 89999999654211 01 1256778999998 99998888765
No 51
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=95.66 E-value=0.45 Score=44.55 Aligned_cols=159 Identities=18% Similarity=0.105 Sum_probs=89.4
Q ss_pred ccccCCCCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHh--CCCEEEEeeeccccC
Q 044601 7 KWSNHYSSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEE--RGCLVFYGVDAMQMS 84 (213)
Q Consensus 7 k~~~~y~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~--~g~~V~~gVDAt~L~ 84 (213)
.|+..+.++++||=+|=|.=+|+++.+.. + +..|++ .|..+...+ -+.+|++...- ..+.+ ..-|+-+.-
T Consensus 213 ~~~~~~~~g~rVLDlfsgtG~~~l~aa~~-g-a~~V~~--VD~s~~al~---~a~~N~~~Ngl~~~~v~~-i~~D~~~~l 284 (396)
T PRK15128 213 LATRRYVENKRVLNCFSYTGGFAVSALMG-G-CSQVVS--VDTSQEALD---IARQNVELNKLDLSKAEF-VRDDVFKLL 284 (396)
T ss_pred HHHHHhcCCCeEEEeccCCCHHHHHHHhC-C-CCEEEE--EECCHHHHH---HHHHHHHHcCCCCCcEEE-EEccHHHHH
Confidence 45566778899998887776676665532 2 445655 453333333 25666655321 12333 344665543
Q ss_pred CCccccCCcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCCCCCc----ccHHhHH
Q 044601 85 QHFFLRTHKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGDPYNK----WELVKKA 160 (213)
Q Consensus 85 ~~~~l~~~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py~~----W~i~~lA 160 (213)
........+||.||.|=|-... .++ .+..-..-...++..|.++|+ ++|.+..+.|.+. .+. .-+...|
T Consensus 285 ~~~~~~~~~fDlVilDPP~f~~-~k~----~l~~~~~~y~~l~~~a~~lLk-~gG~lv~~scs~~-~~~~~f~~~v~~aa 357 (396)
T PRK15128 285 RTYRDRGEKFDVIVMDPPKFVE-NKS----QLMGACRGYKDINMLAIQLLN-PGGILLTFSCSGL-MTSDLFQKIIADAA 357 (396)
T ss_pred HHHHhcCCCCCEEEECCCCCCC-ChH----HHHHHHHHHHHHHHHHHHHcC-CCeEEEEEeCCCc-CCHHHHHHHHHHHH
Confidence 2221124679999999997543 111 121112225566778999998 9999998887653 222 2344456
Q ss_pred HHhCcEEEEEe-ecCCCCCCC
Q 044601 161 EKIGLTLQEVV-PFCKQDYPG 180 (213)
Q Consensus 161 ~~~gl~l~~~~-~F~~~~yPg 180 (213)
.++|-.+.-.. .-.+.|+|-
T Consensus 358 ~~~~~~~~~l~~~~~~~DhP~ 378 (396)
T PRK15128 358 IDAGRDVQFIEQFRQAADHPV 378 (396)
T ss_pred HHcCCeEEEEEEcCCCCCCCC
Confidence 66664443332 235566653
No 52
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=95.58 E-value=0.45 Score=35.28 Aligned_cols=105 Identities=17% Similarity=0.121 Sum_probs=66.4
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCC
Q 044601 13 SSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTH 92 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~ 92 (213)
.++++||=+|-|.=.++..|++..+ +..+++.-+. +...+ .+..|++.+.-..+.+ +.-|+...... ...
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~-~~~v~~vD~s--~~~~~---~a~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~ 87 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVP-NGRVYAIERN--PEALR---LIERNARRFGVSNIVI-VEGDAPEALED---SLP 87 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCC-CceEEEEcCC--HHHHH---HHHHHHHHhCCCceEE-EeccccccChh---hcC
Confidence 3467999999999999999998864 4566555443 33322 2455665553223333 33444432111 125
Q ss_pred cccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEe
Q 044601 93 KFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTH 145 (213)
Q Consensus 93 ~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl 145 (213)
+||.|+...+. ..+..+++.+.++|+ ++|.+.++.
T Consensus 88 ~~D~v~~~~~~-----------------~~~~~~l~~~~~~Lk-~gG~li~~~ 122 (124)
T TIGR02469 88 EPDRVFIGGSG-----------------GLLQEILEAIWRRLR-PGGRIVLNA 122 (124)
T ss_pred CCCEEEECCcc-----------------hhHHHHHHHHHHHcC-CCCEEEEEe
Confidence 79999985421 112488999999998 999998875
No 53
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=95.58 E-value=0.3 Score=47.09 Aligned_cols=140 Identities=20% Similarity=0.176 Sum_probs=84.1
Q ss_pred CCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhC-CCEEEEeeeccccCCCccccCCc
Q 044601 15 KQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEER-GCLVFYGVDAMQMSQHFFLRTHK 93 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~-g~~V~~gVDAt~L~~~~~l~~~~ 93 (213)
..+||=+|=|.=.++.+|++.+. ...++|+-.+ ++.+.. +..|++...-. .+. +...|+.. .+...+
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p-~~~v~avDis-~~al~~----A~~N~~~~~l~~~v~-~~~~D~~~-----~~~~~~ 206 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELP-NANVIATDIS-LDAIEV----AKSNAIKYEVTDRIQ-IIHSNWFE-----NIEKQK 206 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCC-CCeEEEEECC-HHHHHH----HHHHHHHcCCcccee-eeecchhh-----hCcCCC
Confidence 46899999888788888887763 4567666443 333322 56666443211 122 23344422 122457
Q ss_pred ccEEEEcCCcCCCcccccchHHHHh------------hHHHHHHHHHHHHhhcccCCCeEEEEeccCCCCCcccHHhHHH
Q 044601 94 FDRVIYNFPHVGFIFRENSYCQIQL------------NKELVKGFLRNAKLLLKEENGEIHVTHKEGDPYNKWELVKKAE 161 (213)
Q Consensus 94 FDrIiFNFPH~G~~~~e~~~~~i~~------------n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py~~W~i~~lA~ 161 (213)
||.||.|=|.+...-.......+.. =...++.++..|..+|+ ++|.+.+.+-. ...-.+..+..
T Consensus 207 fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~-~gG~l~lEig~---~q~~~v~~~~~ 282 (506)
T PRK01544 207 FDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLK-PNGKIILEIGF---KQEEAVTQIFL 282 (506)
T ss_pred ccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhcc-CCCEEEEEECC---chHHHHHHHHH
Confidence 9999999999874211110011111 12456778899999998 99999887532 23446677777
Q ss_pred HhCcEEEEE
Q 044601 162 KIGLTLQEV 170 (213)
Q Consensus 162 ~~gl~l~~~ 170 (213)
..|+.....
T Consensus 283 ~~g~~~~~~ 291 (506)
T PRK01544 283 DHGYNIESV 291 (506)
T ss_pred hcCCCceEE
Confidence 788765444
No 54
>PLN02244 tocopherol O-methyltransferase
Probab=95.47 E-value=0.68 Score=42.12 Aligned_cols=139 Identities=24% Similarity=0.295 Sum_probs=85.9
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCC--EE-EEeeeccccCCCccc
Q 044601 13 SSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGC--LV-FYGVDAMQMSQHFFL 89 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~--~V-~~gVDAt~L~~~~~l 89 (213)
.+.++||=||=|.=.++..|++.+ +..|++.-+. .+.+.. +..+.+ +.|. .| ...-|+..+. +
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s-~~~i~~----a~~~~~---~~g~~~~v~~~~~D~~~~~----~ 182 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLS-PVQAAR----ANALAA---AQGLSDKVSFQVADALNQP----F 182 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECC-HHHHHH----HHHHHH---hcCCCCceEEEEcCcccCC----C
Confidence 467899999998888899999887 3577766554 322221 333322 2232 22 3344777653 3
Q ss_pred cCCcccEEEEcCC--cCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEe-ccC--CC--------------
Q 044601 90 RTHKFDRVIYNFP--HVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTH-KEG--DP-------------- 150 (213)
Q Consensus 90 ~~~~FDrIiFNFP--H~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl-~~~--~p-------------- 150 (213)
....||.|+.++- |... ...+|+.+..+|+ |+|.+.|+- +.. .|
T Consensus 183 ~~~~FD~V~s~~~~~h~~d----------------~~~~l~e~~rvLk-pGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~ 245 (340)
T PLN02244 183 EDGQFDLVWSMESGEHMPD----------------KRKFVQELARVAA-PGGRIIIVTWCHRDLEPGETSLKPDEQKLLD 245 (340)
T ss_pred CCCCccEEEECCchhccCC----------------HHHHHHHHHHHcC-CCcEEEEEEecccccccccccCCHHHHHHHH
Confidence 3578999997643 3331 1368888999998 999988853 110 00
Q ss_pred -------CCcc----cHHhHHHHhCcEEEEEeecCCCCCCCCc
Q 044601 151 -------YNKW----ELVKKAEKIGLTLQEVVPFCKQDYPGYD 182 (213)
Q Consensus 151 -------y~~W----~i~~lA~~~gl~l~~~~~F~~~~yPgY~ 182 (213)
...| +++.+++++||..++..++....-|-|.
T Consensus 246 ~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~~~d~s~~v~~~~~ 288 (340)
T PLN02244 246 KICAAYYLPAWCSTSDYVKLAESLGLQDIKTEDWSEHVAPFWP 288 (340)
T ss_pred HHHhhccCCCCCCHHHHHHHHHHCCCCeeEeeeCcHHHHHHHH
Confidence 0112 4556788999999888766544445444
No 55
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=95.38 E-value=0.74 Score=38.26 Aligned_cols=107 Identities=21% Similarity=0.291 Sum_probs=64.1
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCCc
Q 044601 14 SKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTHK 93 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~~ 93 (213)
+..+||-||-|.=.++..+++..+....++++-.+ +.+.+ .+.+++..............|+..+. .....
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s--~~~~~---~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~ 121 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFS--EGMLA---VGREKLRDLGLSGNVEFVQGDAEALP----FPDNS 121 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCC--HHHHH---HHHHhhcccccccCeEEEecccccCC----CCCCC
Confidence 56899999999989999998887433556555543 22222 13333322111122234456877754 22467
Q ss_pred ccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEE
Q 044601 94 FDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVT 144 (213)
Q Consensus 94 FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvT 144 (213)
||.|+.++=.... .-+..+++++..+|+ ++|.|.+.
T Consensus 122 ~D~I~~~~~l~~~--------------~~~~~~l~~~~~~L~-~gG~li~~ 157 (239)
T PRK00216 122 FDAVTIAFGLRNV--------------PDIDKALREMYRVLK-PGGRLVIL 157 (239)
T ss_pred ccEEEEecccccC--------------CCHHHHHHHHHHhcc-CCcEEEEE
Confidence 9999875421111 013467888899998 99987653
No 56
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=95.20 E-value=0.46 Score=40.02 Aligned_cols=104 Identities=20% Similarity=0.150 Sum_probs=66.9
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCC
Q 044601 13 SSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTH 92 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~ 92 (213)
.++++||=+|=|.=.++..|++..+....|+|.-.+ +++.+ .+..|++.+.-.+++++. -|+..... ...
T Consensus 76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~--~~~~~---~A~~~~~~~g~~~v~~~~-~d~~~~~~----~~~ 145 (215)
T TIGR00080 76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERI--PELAE---KAERRLRKLGLDNVIVIV-GDGTQGWE----PLA 145 (215)
T ss_pred CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCC--HHHHH---HHHHHHHHCCCCCeEEEE-CCcccCCc----ccC
Confidence 567899999999988999999887544456665544 34443 366676655433455443 46654321 135
Q ss_pred cccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEecc
Q 044601 93 KFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKE 147 (213)
Q Consensus 93 ~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~ 147 (213)
.||+|+.+.+-... .......|+ ++|.+.+.+.+
T Consensus 146 ~fD~Ii~~~~~~~~--------------------~~~~~~~L~-~gG~lv~~~~~ 179 (215)
T TIGR00080 146 PYDRIYVTAAGPKI--------------------PEALIDQLK-EGGILVMPVGE 179 (215)
T ss_pred CCCEEEEcCCcccc--------------------cHHHHHhcC-cCcEEEEEEcC
Confidence 79999998653221 112356787 99999887754
No 57
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=95.18 E-value=0.44 Score=39.65 Aligned_cols=133 Identities=20% Similarity=0.169 Sum_probs=81.1
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHH-hCCCEEEEeeeccccCCCcccc
Q 044601 12 YSSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELE-ERGCLVFYGVDAMQMSQHFFLR 90 (213)
Q Consensus 12 y~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~-~~g~~V~~gVDAt~L~~~~~l~ 90 (213)
..++.+||-+|=|.=++|..+++..+...+|+|.-.+ .+..+ .+++|+..+. ...+.+. .-|+.++-.. .
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~--~~~~~---~a~~n~~~~g~~~~v~~~-~~d~~~~l~~---~ 108 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKD--EKAIN---LTRRNAEKFGVLNNIVLI-KGEAPEILFT---I 108 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECC--HHHHH---HHHHHHHHhCCCCCeEEE-EechhhhHhh---c
Confidence 3467899999999988888888887655566665444 33333 3667777654 2334443 4566553211 1
Q ss_pred CCcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCCCCCcccHHhHHHHhCcEEEEE
Q 044601 91 THKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGDPYNKWELVKKAEKIGLTLQEV 170 (213)
Q Consensus 91 ~~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py~~W~i~~lA~~~gl~l~~~ 170 (213)
...||+|+-+. +. + -+..++..+..+|+ ++|.+.+...+- ...=.+....++.|+.....
T Consensus 109 ~~~~D~V~~~~---~~---~-----------~~~~~l~~~~~~Lk-pgG~lv~~~~~~--~~~~~~~~~l~~~g~~~~~~ 168 (198)
T PRK00377 109 NEKFDRIFIGG---GS---E-----------KLKEIISASWEIIK-KGGRIVIDAILL--ETVNNALSALENIGFNLEIT 168 (198)
T ss_pred CCCCCEEEECC---Cc---c-----------cHHHHHHHHHHHcC-CCcEEEEEeecH--HHHHHHHHHHHHcCCCeEEE
Confidence 25799999864 11 0 12467888999998 999998754421 11113344556778855444
Q ss_pred eec
Q 044601 171 VPF 173 (213)
Q Consensus 171 ~~F 173 (213)
..+
T Consensus 169 ~~~ 171 (198)
T PRK00377 169 EVI 171 (198)
T ss_pred EEe
Confidence 444
No 58
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=95.16 E-value=0.36 Score=44.66 Aligned_cols=125 Identities=20% Similarity=0.233 Sum_probs=84.4
Q ss_pred EEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCCcccEEEE
Q 044601 20 LVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTHKFDRVIY 99 (213)
Q Consensus 20 lVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~~FDrIiF 99 (213)
.+|=|.|=--++|. +.+++.+ |=...+.+ .+..|++...-.+..++-.-||++|. |+.+.||-|+-
T Consensus 205 FcGTGgiLiEagl~-----G~~viG~--Did~~mv~---gak~Nl~~y~i~~~~~~~~~Da~~lp----l~~~~vdaIat 270 (347)
T COG1041 205 FCGTGGILIEAGLM-----GARVIGS--DIDERMVR---GAKINLEYYGIEDYPVLKVLDATNLP----LRDNSVDAIAT 270 (347)
T ss_pred cCCccHHHHhhhhc-----CceEeec--chHHHHHh---hhhhhhhhhCcCceeEEEecccccCC----CCCCccceEEe
Confidence 35666554444443 5788888 43344444 38889998875566666666999987 55668999999
Q ss_pred cCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCCCCCcccHHhHHHHhCcEEEEEe
Q 044601 100 NFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGDPYNKWELVKKAEKIGLTLQEVV 171 (213)
Q Consensus 100 NFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py~~W~i~~lA~~~gl~l~~~~ 171 (213)
+=|= |..++.. ...--+|+..||.+++.+|+ ++|.+..... .+ ...-+.+.|+.+...+
T Consensus 271 DPPY-Grst~~~----~~~l~~Ly~~~le~~~evLk-~gG~~vf~~p----~~---~~~~~~~~~f~v~~~~ 329 (347)
T COG1041 271 DPPY-GRSTKIK----GEGLDELYEEALESASEVLK-PGGRIVFAAP----RD---PRHELEELGFKVLGRF 329 (347)
T ss_pred cCCC-Ccccccc----cccHHHHHHHHHHHHHHHhh-cCcEEEEecC----Cc---chhhHhhcCceEEEEE
Confidence 9774 4321100 01235899999999999998 8999888775 22 2246778888888763
No 59
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=95.15 E-value=0.77 Score=42.30 Aligned_cols=140 Identities=16% Similarity=0.131 Sum_probs=85.7
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCC
Q 044601 13 SSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTH 92 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~ 92 (213)
....+||=||-|.=.+++.|++..+ +.+++++-.. ++.+.. +.++.. ..++.+ ..-|+..+. +...
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S-~~mL~~----A~~k~~---~~~i~~-i~gD~e~lp----~~~~ 177 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQS-PHQLAK----AKQKEP---LKECKI-IEGDAEDLP----FPTD 177 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECC-HHHHHH----HHHhhh---ccCCeE-EeccHHhCC----CCCC
Confidence 3568999999998778888888774 4567765443 332222 333221 224444 334555432 2356
Q ss_pred cccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCC--------------CCCcccHHh
Q 044601 93 KFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGD--------------PYNKWELVK 158 (213)
Q Consensus 93 ~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~--------------py~~W~i~~ 158 (213)
.||.||-+....-.. +. ...|+.+..+|+ ++|.+.|.-.... ....-.+..
T Consensus 178 sFDvVIs~~~L~~~~-----------d~---~~~L~e~~rvLk-PGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~ 242 (340)
T PLN02490 178 YADRYVSAGSIEYWP-----------DP---QRGIKEAYRVLK-IGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIE 242 (340)
T ss_pred ceeEEEEcChhhhCC-----------CH---HHHHHHHHHhcC-CCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHH
Confidence 799999875432211 01 146899999998 9999877521110 011233456
Q ss_pred HHHHhCcEEEEEeecCCCCCCCC
Q 044601 159 KAEKIGLTLQEVVPFCKQDYPGY 181 (213)
Q Consensus 159 lA~~~gl~l~~~~~F~~~~yPgY 181 (213)
+.+++||..++..+..+..|+|=
T Consensus 243 lL~~aGF~~V~i~~i~~~~~~~~ 265 (340)
T PLN02490 243 WFTKAGFKDVKLKRIGPKWYRGV 265 (340)
T ss_pred HHHHCCCeEEEEEEcChhhcccc
Confidence 78889999999988877666643
No 60
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=95.12 E-value=0.54 Score=39.64 Aligned_cols=128 Identities=22% Similarity=0.197 Sum_probs=77.0
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCCc
Q 044601 14 SKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTHK 93 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~~ 93 (213)
++.+||-||-|.=+++..|++. + ..++++-.+ ....+ .+..++..... .+. ....|+..+... ....
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~-~--~~v~~iD~s--~~~~~---~a~~~~~~~~~-~~~-~~~~~~~~~~~~---~~~~ 114 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARL-G--ADVTGIDAS--EENIE---VARLHALESGL-KID-YRQTTAEELAAE---HPGQ 114 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHc-C--CeEEEEcCC--HHHHH---HHHHHHHHcCC-ceE-EEecCHHHhhhh---cCCC
Confidence 4789999999887788777764 2 466666444 22222 13333332211 222 234555554321 2468
Q ss_pred ccEEEEcC--CcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCCC---------------------
Q 044601 94 FDRVIYNF--PHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGDP--------------------- 150 (213)
Q Consensus 94 FDrIiFNF--PH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~p--------------------- 150 (213)
||.|+.++ .|++. ...+++++..+|+ ++|.+.++.....+
T Consensus 115 fD~Ii~~~~l~~~~~----------------~~~~l~~~~~~L~-~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (233)
T PRK05134 115 FDVVTCMEMLEHVPD----------------PASFVRACAKLVK-PGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGT 177 (233)
T ss_pred ccEEEEhhHhhccCC----------------HHHHHHHHHHHcC-CCcEEEEEecCCChHHHHHHHhhHHHHhhhcCccc
Confidence 99999864 33331 1256888999998 99999887532211
Q ss_pred ------CCcccHHhHHHHhCcEEEEEe
Q 044601 151 ------YNKWELVKKAEKIGLTLQEVV 171 (213)
Q Consensus 151 ------y~~W~i~~lA~~~gl~l~~~~ 171 (213)
++..++..+.+++||.++...
T Consensus 178 ~~~~~~~~~~~~~~~l~~~Gf~~v~~~ 204 (233)
T PRK05134 178 HDYKKFIKPSELAAWLRQAGLEVQDIT 204 (233)
T ss_pred CchhhcCCHHHHHHHHHHCCCeEeeee
Confidence 122357778889999888663
No 61
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=95.06 E-value=0.15 Score=49.16 Aligned_cols=135 Identities=13% Similarity=0.104 Sum_probs=92.3
Q ss_pred CCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhC---CCEEEEeeeccccCCCccccC
Q 044601 15 KQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEER---GCLVFYGVDAMQMSQHFFLRT 91 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~---g~~V~~gVDAt~L~~~~~l~~ 91 (213)
..-+|=||=|+=.|...+|+.+ +..++++--.... ....-+...++. ++.++ .-|+..+...+ ..
T Consensus 348 ~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~--------~~~~~~~~~~~~~l~N~~~~-~~~~~~~~~~~--~~ 415 (506)
T PRK01544 348 RKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLN--------GVANVLKLAGEQNITNFLLF-PNNLDLILNDL--PN 415 (506)
T ss_pred CceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHH--------HHHHHHHHHHHcCCCeEEEE-cCCHHHHHHhc--Cc
Confidence 4566778888888888888887 4778888655421 112223333333 34444 34887776554 46
Q ss_pred CcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCCCCCcccHHhHHHHhCcEEEE
Q 044601 92 HKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGDPYNKWELVKKAEKIGLTLQE 169 (213)
Q Consensus 92 ~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py~~W~i~~lA~~~gl~l~~ 169 (213)
+.+|.|..|||-.=.|.+. +++|-+=..|+.....+|+ ++|.|++.-- .++|-.|-+..+.+..++.+..
T Consensus 416 ~sv~~i~i~FPDPWpKkrh------~krRl~~~~fl~~~~~~Lk-~gG~i~~~TD-~~~y~~~~~~~~~~~~~f~~~~ 485 (506)
T PRK01544 416 NSLDGIYILFPDPWIKNKQ------KKKRIFNKERLKILQDKLK-DNGNLVFASD-IENYFYEAIELIQQNGNFEIIN 485 (506)
T ss_pred ccccEEEEECCCCCCCCCC------ccccccCHHHHHHHHHhcC-CCCEEEEEcC-CHHHHHHHHHHHHhCCCeEecc
Confidence 7899999999998876432 1333444677778889998 9999998774 4578899888887777787653
No 62
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=94.96 E-value=1.1 Score=36.78 Aligned_cols=104 Identities=17% Similarity=0.169 Sum_probs=65.1
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCCc
Q 044601 14 SKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTHK 93 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~~ 93 (213)
+..+||=+|-|.=.++..+++..+....+++.-.+ +++.+ .+.+++. ....+.+ ...|+..+. .....
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~--~~~~~---~~~~~~~--~~~~i~~-~~~d~~~~~----~~~~~ 106 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFS--SEMLE---VAKKKSE--LPLNIEF-IQADAEALP----FEDNS 106 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECC--HHHHH---HHHHHhc--cCCCceE-EecchhcCC----CCCCc
Confidence 57899999999988999999887432455555443 22222 1333333 1123443 357777654 22467
Q ss_pred ccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEE
Q 044601 94 FDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVT 144 (213)
Q Consensus 94 FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvT 144 (213)
||.|+.++--... . =+..+++++..+|+ ++|.+.+.
T Consensus 107 ~D~i~~~~~~~~~---~-----------~~~~~l~~~~~~L~-~gG~l~~~ 142 (223)
T TIGR01934 107 FDAVTIAFGLRNV---T-----------DIQKALREMYRVLK-PGGRLVIL 142 (223)
T ss_pred EEEEEEeeeeCCc---c-----------cHHHHHHHHHHHcC-CCcEEEEE
Confidence 9999987642211 0 12367899999998 99998764
No 63
>PRK08317 hypothetical protein; Provisional
Probab=94.81 E-value=0.76 Score=37.90 Aligned_cols=108 Identities=22% Similarity=0.158 Sum_probs=68.1
Q ss_pred CCCCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEE-EEeeeccccCCCccc
Q 044601 11 HYSSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLV-FYGVDAMQMSQHFFL 89 (213)
Q Consensus 11 ~y~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V-~~gVDAt~L~~~~~l 89 (213)
...++++||-+|-|.=.++..+++.+++..+++++..+.. .+. .+..+ ....+..+ ....|++.+. +
T Consensus 16 ~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~-~~~----~a~~~---~~~~~~~~~~~~~d~~~~~----~ 83 (241)
T PRK08317 16 AVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEA-MLA----LAKER---AAGLGPNVEFVRGDADGLP----F 83 (241)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHH-HHH----HHHHH---hhCCCCceEEEecccccCC----C
Confidence 4566789999999998999999988765668888777632 111 12222 11122233 3334665543 2
Q ss_pred cCCcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEe
Q 044601 90 RTHKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTH 145 (213)
Q Consensus 90 ~~~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl 145 (213)
....||.|+.+.-..-.. + ...+++.+..+|+ ++|.+.+.-
T Consensus 84 ~~~~~D~v~~~~~~~~~~-----------~---~~~~l~~~~~~L~-~gG~l~~~~ 124 (241)
T PRK08317 84 PDGSFDAVRSDRVLQHLE-----------D---PARALAEIARVLR-PGGRVVVLD 124 (241)
T ss_pred CCCCceEEEEechhhccC-----------C---HHHHHHHHHHHhc-CCcEEEEEe
Confidence 357899999874321110 1 2357888899998 999988764
No 64
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=94.78 E-value=0.13 Score=44.98 Aligned_cols=146 Identities=17% Similarity=0.215 Sum_probs=86.3
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCH-HHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCC
Q 044601 14 SKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQ-ETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTH 92 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~-~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~ 92 (213)
+.++||++|=|+-+-+..|+++. +...|++--+|.. =++.++|-..... .++.-.++| +--||-..-+.. ..
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~--~~~d~r~~i-~~~Dg~~~l~~~---~~ 148 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSE--GLDDPRVRI-IIGDGRKFLKET---QE 148 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHT--TGGSTTEEE-EESTHHHHHHTS---SS
T ss_pred CcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhcc--ccCCCceEE-EEhhhHHHHHhc---cC
Confidence 67999999999999999998765 3568888888843 2444554221111 144445666 445665543332 23
Q ss_pred -cccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCCCCC----cccHHhHHHHhCcEE
Q 044601 93 -KFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGDPYN----KWELVKKAEKIGLTL 167 (213)
Q Consensus 93 -~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py~----~W~i~~lA~~~gl~l 167 (213)
+||.||-+-+...+.. .+ ..-..||+.++..|+ ++|-+.+-. +.|+. .+.+...-+...- .
T Consensus 149 ~~yDvIi~D~~dp~~~~---------~~-l~t~ef~~~~~~~L~-~~Gv~v~~~--~~~~~~~~~~~~i~~tl~~~F~-~ 214 (246)
T PF01564_consen 149 EKYDVIIVDLTDPDGPA---------PN-LFTREFYQLCKRRLK-PDGVLVLQA--GSPFLHPELFKSILKTLRSVFP-Q 214 (246)
T ss_dssp T-EEEEEEESSSTTSCG---------GG-GSSHHHHHHHHHHEE-EEEEEEEEE--EETTTTHHHHHHHHHHHHTTSS-E
T ss_pred CcccEEEEeCCCCCCCc---------cc-ccCHHHHHHHHhhcC-CCcEEEEEc--cCcccchHHHHHHHHHHHHhCC-c
Confidence 8999999988833211 22 335689999999998 999888776 22332 2444443333333 3
Q ss_pred EEEeecCCCCCCC
Q 044601 168 QEVVPFCKQDYPG 180 (213)
Q Consensus 168 ~~~~~F~~~~yPg 180 (213)
.....+.-..||+
T Consensus 215 v~~~~~~vP~~~~ 227 (246)
T PF01564_consen 215 VKPYTAYVPSYGS 227 (246)
T ss_dssp EEEEEEECTTSCS
T ss_pred eEEEEEEcCeecc
Confidence 4443444444544
No 65
>PRK04266 fibrillarin; Provisional
Probab=94.73 E-value=2.5 Score=36.48 Aligned_cols=136 Identities=15% Similarity=0.163 Sum_probs=79.9
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccC
Q 044601 12 YSSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRT 91 (213)
Q Consensus 12 y~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~ 91 (213)
..++++||=+|=|.=.++..|++..+ ...|+|- |..+++++. ..++.+.. .++.++ .-|++.......+.
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~av--D~~~~ml~~---l~~~a~~~--~nv~~i-~~D~~~~~~~~~l~- 139 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAV--EFAPRPMRE---LLEVAEER--KNIIPI-LADARKPERYAHVV- 139 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEE--ECCHHHHHH---HHHHhhhc--CCcEEE-ECCCCCcchhhhcc-
Confidence 45788999999998778899988875 3355554 544433331 22222221 345444 34666432112222
Q ss_pred CcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCC-----CCCcc--cHHhHHHHhC
Q 044601 92 HKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGD-----PYNKW--ELVKKAEKIG 164 (213)
Q Consensus 92 ~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~-----py~~W--~i~~lA~~~g 164 (213)
..||.|+-+.|..- -...+++.+..+|+ |+|.+.|++.-.. +-..| +.....+.+|
T Consensus 140 ~~~D~i~~d~~~p~----------------~~~~~L~~~~r~LK-pGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aG 202 (226)
T PRK04266 140 EKVDVIYQDVAQPN----------------QAEIAIDNAEFFLK-DGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGG 202 (226)
T ss_pred ccCCEEEECCCChh----------------HHHHHHHHHHHhcC-CCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcC
Confidence 45999985544210 01235778889998 9999999865321 10111 1236777889
Q ss_pred cEEEEEeecC
Q 044601 165 LTLQEVVPFC 174 (213)
Q Consensus 165 l~l~~~~~F~ 174 (213)
|...+...+.
T Consensus 203 F~~i~~~~l~ 212 (226)
T PRK04266 203 FEILEVVDLE 212 (226)
T ss_pred CeEEEEEcCC
Confidence 9999887763
No 66
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=94.70 E-value=0.47 Score=43.10 Aligned_cols=133 Identities=21% Similarity=0.216 Sum_probs=85.2
Q ss_pred CCeEEEEecCChhHHHHHHHHhCCCCeEEEeccC-CHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCCc
Q 044601 15 KQRILLVGEGDFSFSLCLAREFGFAHNMVATCLD-TQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTHK 93 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~d-s~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~~ 93 (213)
..+||=||=|.==-+..|++..+ ...| |-.| +...|.. ++.|+..=.=.+..|.++-..... .. +
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p-~~~v--tmvDvn~~Av~~----ar~Nl~~N~~~~~~v~~s~~~~~v------~~-k 224 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSP-QAKL--TLVDVNARAVES----ARKNLAANGVENTEVWASNLYEPV------EG-K 224 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCC-CCeE--EEEecCHHHHHH----HHHhHHHcCCCccEEEEecccccc------cc-c
Confidence 34788888888777888887753 3333 3444 3333332 455543322122234444333332 23 8
Q ss_pred ccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCCCCCc------ccHHhHHHHhCcEE
Q 044601 94 FDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGDPYNK------WELVKKAEKIGLTL 167 (213)
Q Consensus 94 FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py~~------W~i~~lA~~~gl~l 167 (213)
||.||-|=|.--++. ....+-..+|+.|...|+ ++|++.|-.....||.. =+++.+|+..||.+
T Consensus 225 fd~IisNPPfh~G~~---------v~~~~~~~~i~~A~~~L~-~gGeL~iVan~~l~y~~~L~~~Fg~v~~la~~~gf~V 294 (300)
T COG2813 225 FDLIISNPPFHAGKA---------VVHSLAQEIIAAAARHLK-PGGELWIVANRHLPYEKKLKELFGNVEVLAKNGGFKV 294 (300)
T ss_pred ccEEEeCCCccCCcc---------hhHHHHHHHHHHHHHhhc-cCCEEEEEEcCCCChHHHHHHhcCCEEEEEeCCCEEE
Confidence 999999999766532 445677899999999998 99999999986666531 24667777888877
Q ss_pred EEEe
Q 044601 168 QEVV 171 (213)
Q Consensus 168 ~~~~ 171 (213)
.+..
T Consensus 295 l~a~ 298 (300)
T COG2813 295 LRAK 298 (300)
T ss_pred EEEe
Confidence 7654
No 67
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=94.64 E-value=0.58 Score=40.41 Aligned_cols=104 Identities=18% Similarity=0.275 Sum_probs=65.4
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCC--E-EEEeeeccccCCCccc
Q 044601 13 SSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGC--L-VFYGVDAMQMSQHFFL 89 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~--~-V~~gVDAt~L~~~~~l 89 (213)
.+..+||=||=|.=.+|..|++. +..+++. |..+++.+. +++++.. .|. . .+..-|+..+...
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~---g~~v~~v--D~s~~~l~~---a~~~~~~---~g~~~~v~~~~~d~~~l~~~--- 108 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL---GHQVILC--DLSAEMIQR---AKQAAEA---KGVSDNMQFIHCAAQDIAQH--- 108 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc---CCEEEEE--ECCHHHHHH---HHHHHHh---cCCccceEEEEcCHHHHhhh---
Confidence 45689999999988999999875 3566655 543444432 4444433 332 1 2344577666432
Q ss_pred cCCcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEe
Q 044601 90 RTHKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTH 145 (213)
Q Consensus 90 ~~~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl 145 (213)
....||.|+.+...--. .+. ..++..+..+|+ |+|.+.|+.
T Consensus 109 ~~~~fD~V~~~~vl~~~-----------~~~---~~~l~~~~~~Lk-pgG~l~i~~ 149 (255)
T PRK11036 109 LETPVDLILFHAVLEWV-----------ADP---KSVLQTLWSVLR-PGGALSLMF 149 (255)
T ss_pred cCCCCCEEEehhHHHhh-----------CCH---HHHHHHHHHHcC-CCeEEEEEE
Confidence 24689999987552211 011 256788889998 999998764
No 68
>PRK06922 hypothetical protein; Provisional
Probab=94.55 E-value=0.34 Score=48.47 Aligned_cols=119 Identities=22% Similarity=0.296 Sum_probs=73.8
Q ss_pred ccCCCCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCcc
Q 044601 9 SNHYSSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFF 88 (213)
Q Consensus 9 ~~~y~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~ 88 (213)
+..+.++.+||=||=|.=.++..|++.+ ++..++|. |-...+.+. +..++... ...+.++.+ |+.++...+
T Consensus 413 i~d~~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGI--DIS~~MLe~---Ararl~~~-g~~ie~I~g-Da~dLp~~f- 483 (677)
T PRK06922 413 ILDYIKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGI--DISENVIDT---LKKKKQNE-GRSWNVIKG-DAINLSSSF- 483 (677)
T ss_pred HhhhcCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEE--ECCHHHHHH---HHHHhhhc-CCCeEEEEc-chHhCcccc-
Confidence 4456678999999888877788888876 35566554 533333332 33333221 112333333 777765333
Q ss_pred ccCCcccEEEEcCCc------CCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEe
Q 044601 89 LRTHKFDRVIYNFPH------VGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTH 145 (213)
Q Consensus 89 l~~~~FDrIiFNFPH------~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl 145 (213)
..+.||.|++|++- +...+. ..+..-+..+++++..+|+ |+|.+.|.-
T Consensus 484 -edeSFDvVVsn~vLH~L~syIp~~g~-------~f~~edl~kiLreI~RVLK-PGGrLII~D 537 (677)
T PRK06922 484 -EKESVDTIVYSSILHELFSYIEYEGK-------KFNHEVIKKGLQSAYEVLK-PGGRIIIRD 537 (677)
T ss_pred -CCCCEEEEEEchHHHhhhhhcccccc-------cccHHHHHHHHHHHHHHcC-CCcEEEEEe
Confidence 35789999999652 211110 1234567789999999998 999998863
No 69
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=94.52 E-value=0.86 Score=40.25 Aligned_cols=118 Identities=19% Similarity=0.196 Sum_probs=73.3
Q ss_pred CeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCC-CEEEEeeeccccCCCccccCCcc
Q 044601 16 QRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERG-CLVFYGVDAMQMSQHFFLRTHKF 94 (213)
Q Consensus 16 ~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g-~~V~~gVDAt~L~~~~~l~~~~F 94 (213)
.+||=+|=|.=.++.+|++... ...++|+-.. .+.+. -+..|++.+.-.+ +.++ .-|+.+ . +...+|
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis-~~al~----~a~~n~~~~~~~~~v~~~-~~d~~~---~--~~~~~f 183 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFP-NAEVIAVDIS-PDALA----VAEENAEKNQLEHRVEFI-QSNLFE---P--LAGQKI 183 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCC-CCEEEEEECC-HHHHH----HHHHHHHHcCCCCcEEEE-ECchhc---c--CcCCCc
Confidence 6899999998889999998863 4577766443 33222 2566766543222 3333 234432 1 223479
Q ss_pred cEEEEcCCcCCCcccccchHHHH-----------hhHHHHHHHHHHHHhhcccCCCeEEEEec
Q 044601 95 DRVIYNFPHVGFIFRENSYCQIQ-----------LNKELVKGFLRNAKLLLKEENGEIHVTHK 146 (213)
Q Consensus 95 DrIiFNFPH~G~~~~e~~~~~i~-----------~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~ 146 (213)
|.||.|=|-+...........+. ....+++.++..|..+|+ ++|.+.+.+-
T Consensus 184 DlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~-~gG~l~~e~g 245 (284)
T TIGR00536 184 DIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLK-PNGFLVCEIG 245 (284)
T ss_pred cEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhcc-CCCEEEEEEC
Confidence 99999999887531110000000 113478889999999998 9999988774
No 70
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=94.48 E-value=2.1 Score=37.44 Aligned_cols=105 Identities=14% Similarity=0.207 Sum_probs=64.0
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccC
Q 044601 12 YSSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRT 91 (213)
Q Consensus 12 y~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~ 91 (213)
..++.+||=||-|.=..+..|++.. +..+++.-.. ++.+.. +..+... ...+. ....|++.+ ++..
T Consensus 50 l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s-~~~~~~----a~~~~~~--~~~i~-~~~~D~~~~----~~~~ 115 (263)
T PTZ00098 50 LNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDIC-EKMVNI----AKLRNSD--KNKIE-FEANDILKK----DFPE 115 (263)
T ss_pred CCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECC-HHHHHH----HHHHcCc--CCceE-EEECCcccC----CCCC
Confidence 3577899999888766677777665 3567666554 222211 2222211 11233 334576643 2235
Q ss_pred CcccEEEEc--CCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEe
Q 044601 92 HKFDRVIYN--FPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTH 145 (213)
Q Consensus 92 ~~FDrIiFN--FPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl 145 (213)
..||.|+.+ +.|.+.. + ...+|+.+..+|+ |+|.+.|+-
T Consensus 116 ~~FD~V~s~~~l~h~~~~-----------d---~~~~l~~i~r~Lk-PGG~lvi~d 156 (263)
T PTZ00098 116 NTFDMIYSRDAILHLSYA-----------D---KKKLFEKCYKWLK-PNGILLITD 156 (263)
T ss_pred CCeEEEEEhhhHHhCCHH-----------H---HHHHHHHHHHHcC-CCcEEEEEE
Confidence 789999985 3565420 1 2368889999998 999998874
No 71
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=94.25 E-value=0.61 Score=38.25 Aligned_cols=129 Identities=17% Similarity=0.106 Sum_probs=79.6
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCC
Q 044601 13 SSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTH 92 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~ 92 (213)
.+..+||=||=|.=+++..+++.. +..++++.-.+ .+..+ .+.+|++.+.-..++++.+ |+.. . + ..
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s--~~~~~---~a~~n~~~~~~~~i~~~~~-d~~~---~--~-~~ 96 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERN--PDALR---LIKENRQRFGCGNIDIIPG-EAPI---E--L-PG 96 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECC--HHHHH---HHHHHHHHhCCCCeEEEec-Cchh---h--c-Cc
Confidence 467899999999999999999875 34455554443 33333 2556666553334555443 4421 1 1 25
Q ss_pred cccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCCCCCcccHHhHHHHhCcEEEEEee
Q 044601 93 KFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGDPYNKWELVKKAEKIGLTLQEVVP 172 (213)
Q Consensus 93 ~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py~~W~i~~lA~~~gl~l~~~~~ 172 (213)
+||.|+.+... . .+..++..+..+|+ ++|.+.+..... .+.=++..+.++.|+...+...
T Consensus 97 ~~D~v~~~~~~--~---------------~~~~~l~~~~~~Lk-~gG~lv~~~~~~--~~~~~~~~~l~~~g~~~~~~~~ 156 (187)
T PRK08287 97 KADAIFIGGSG--G---------------NLTAIIDWSLAHLH-PGGRLVLTFILL--ENLHSALAHLEKCGVSELDCVQ 156 (187)
T ss_pred CCCEEEECCCc--c---------------CHHHHHHHHHHhcC-CCeEEEEEEecH--hhHHHHHHHHHHCCCCcceEEE
Confidence 79999987431 0 12457788899998 999987754221 1112455678888887666544
Q ss_pred cC
Q 044601 173 FC 174 (213)
Q Consensus 173 F~ 174 (213)
..
T Consensus 157 ~~ 158 (187)
T PRK08287 157 LQ 158 (187)
T ss_pred EE
Confidence 43
No 72
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=94.09 E-value=0.46 Score=45.62 Aligned_cols=123 Identities=14% Similarity=0.062 Sum_probs=75.8
Q ss_pred HHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCC--EEEEeeeccccCCCccccCCcccEEEEcCCcCCC
Q 044601 29 SLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGC--LVFYGVDAMQMSQHFFLRTHKFDRVIYNFPHVGF 106 (213)
Q Consensus 29 S~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~--~V~~gVDAt~L~~~~~l~~~~FDrIiFNFPH~G~ 106 (213)
|..||..++....|+|.-.+. ++.....+|++. .|+ .++..-|++++...+ ...||+|+-+=|+.|.
T Consensus 128 Tt~la~~l~~~g~lvA~D~~~-----~R~~~L~~nl~r---~G~~nv~v~~~D~~~~~~~~---~~~fD~ILvDaPCSG~ 196 (470)
T PRK11933 128 TTQIAALMNNQGAIVANEYSA-----SRVKVLHANISR---CGVSNVALTHFDGRVFGAAL---PETFDAILLDAPCSGE 196 (470)
T ss_pred HHHHHHHcCCCCEEEEEeCCH-----HHHHHHHHHHHH---cCCCeEEEEeCchhhhhhhc---hhhcCeEEEcCCCCCC
Confidence 344444443334566654442 111223455554 454 356668888876554 3569999999999995
Q ss_pred ccc-c-------cchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCCC-CCcccHHhHHHHh
Q 044601 107 IFR-E-------NSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGDP-YNKWELVKKAEKI 163 (213)
Q Consensus 107 ~~~-e-------~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~p-y~~W~i~~lA~~~ 163 (213)
+.- . ...+.+.....|=+..+.+|..+|+ ++|.+.=+-|+=.| -+.-+|..+.++.
T Consensus 197 G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~Lk-pGG~LVYSTCT~~~eENE~vV~~~L~~~ 261 (470)
T PRK11933 197 GTVRKDPDALKNWSPESNLEIAATQRELIESAFHALK-PGGTLVYSTCTLNREENQAVCLWLKETY 261 (470)
T ss_pred cccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcC-CCcEEEEECCCCCHHHHHHHHHHHHHHC
Confidence 421 1 1234555666677888999999998 99998766666443 3556666654444
No 73
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=93.98 E-value=0.12 Score=44.14 Aligned_cols=102 Identities=30% Similarity=0.319 Sum_probs=55.9
Q ss_pred CCCCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCcccc
Q 044601 11 HYSSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLR 90 (213)
Q Consensus 11 ~y~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~ 90 (213)
...++..||-.-=|==.||+.+|++. .+..|+|--.....- .-..+|++.=+-.+....+.-||.++-.
T Consensus 98 ~v~~~e~VlD~faGIG~f~l~~ak~~-~~~~V~A~d~Np~a~-----~~L~~Ni~lNkv~~~i~~~~~D~~~~~~----- 166 (200)
T PF02475_consen 98 LVKPGEVVLDMFAGIGPFSLPIAKHG-KAKRVYAVDLNPDAV-----EYLKENIRLNKVENRIEVINGDAREFLP----- 166 (200)
T ss_dssp C--TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHH-----HHHHHHHHHTT-TTTEEEEES-GGG--------
T ss_pred cCCcceEEEEccCCccHHHHHHhhhc-CccEEEEecCCHHHH-----HHHHHHHHHcCCCCeEEEEcCCHHHhcC-----
Confidence 34566777754333334555566643 467899987774321 0122333222222445577889988754
Q ss_pred CCcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEE
Q 044601 91 THKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIH 142 (213)
Q Consensus 91 ~~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ih 142 (213)
...|||||.|.|+..- .|+..|..+++ ++|-||
T Consensus 167 ~~~~drvim~lp~~~~------------------~fl~~~~~~~~-~~g~ih 199 (200)
T PF02475_consen 167 EGKFDRVIMNLPESSL------------------EFLDAALSLLK-EGGIIH 199 (200)
T ss_dssp TT-EEEEEE--TSSGG------------------GGHHHHHHHEE-EEEEEE
T ss_pred ccccCEEEECChHHHH------------------HHHHHHHHHhc-CCcEEE
Confidence 5789999999998874 57788888887 778777
No 74
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=93.94 E-value=1.2 Score=41.01 Aligned_cols=105 Identities=23% Similarity=0.251 Sum_probs=70.3
Q ss_pred HHHHHhCCCE--EEEeeeccccCCCccccCCcccEEEEcCCcCCCcccc---c-----chHHHHhhHHHHHHHHHHHHhh
Q 044601 64 VRELEERGCL--VFYGVDAMQMSQHFFLRTHKFDRVIYNFPHVGFIFRE---N-----SYCQIQLNKELVKGFLRNAKLL 133 (213)
Q Consensus 64 i~~L~~~g~~--V~~gVDAt~L~~~~~l~~~~FDrIiFNFPH~G~~~~e---~-----~~~~i~~n~~Ll~~Ff~Sa~~~ 133 (213)
.+.|+++|+. ++...|+..+..... ...+||+|+-+=|+.|.+..- + ..+.+.....|=..++.+|.++
T Consensus 199 ~~nl~RlG~~nv~~~~~d~~~~~~~~~-~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~ 277 (355)
T COG0144 199 RENLKRLGVRNVIVVNKDARRLAELLP-GGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKL 277 (355)
T ss_pred HHHHHHcCCCceEEEeccccccccccc-ccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555654 688888887764433 123799999999999965321 1 2455666677778899999999
Q ss_pred cccCCCeEEEEeccCCCCCcccHH-h-HHHHhCcEEEEE
Q 044601 134 LKEENGEIHVTHKEGDPYNKWELV-K-KAEKIGLTLQEV 170 (213)
Q Consensus 134 L~~~~G~ihvTl~~~~py~~W~i~-~-lA~~~gl~l~~~ 170 (213)
|+ ++|.+.-+-|+-.|-..=+++ . +.+..++.+...
T Consensus 278 lk-~GG~LVYSTCS~~~eENE~vV~~~L~~~~~~~~~~~ 315 (355)
T COG0144 278 LK-PGGVLVYSTCSLTPEENEEVVERFLERHPDFELEPV 315 (355)
T ss_pred cC-CCCEEEEEccCCchhcCHHHHHHHHHhCCCceeecc
Confidence 98 999999888877664333333 3 334445555544
No 75
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=93.79 E-value=1.8 Score=36.08 Aligned_cols=104 Identities=17% Similarity=0.145 Sum_probs=63.1
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCE-E-EEeeeccccCCCcccc
Q 044601 13 SSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCL-V-FYGVDAMQMSQHFFLR 90 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~-V-~~gVDAt~L~~~~~l~ 90 (213)
.+..+||-+|-|.=.+|..||+. +.+|+| +|...+..+. +..++. ..|+. | ....|+..+. +
T Consensus 29 ~~~~~vLDiGcG~G~~a~~La~~---g~~V~g--vD~S~~~i~~---a~~~~~---~~~~~~v~~~~~d~~~~~----~- 92 (197)
T PRK11207 29 VKPGKTLDLGCGNGRNSLYLAAN---GFDVTA--WDKNPMSIAN---LERIKA---AENLDNLHTAVVDLNNLT----F- 92 (197)
T ss_pred CCCCcEEEECCCCCHHHHHHHHC---CCEEEE--EeCCHHHHHH---HHHHHH---HcCCCcceEEecChhhCC----c-
Confidence 45689999999988888889875 345555 4643433332 333332 22321 1 2234544431 2
Q ss_pred CCcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeE-EEEe
Q 044601 91 THKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEI-HVTH 145 (213)
Q Consensus 91 ~~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~i-hvTl 145 (213)
...||.|+-++...- .+...+..++..+..+|+ ++|.+ .++.
T Consensus 93 ~~~fD~I~~~~~~~~------------~~~~~~~~~l~~i~~~Lk-pgG~~~~~~~ 135 (197)
T PRK11207 93 DGEYDFILSTVVLMF------------LEAKTIPGLIANMQRCTK-PGGYNLIVAA 135 (197)
T ss_pred CCCcCEEEEecchhh------------CCHHHHHHHHHHHHHHcC-CCcEEEEEEE
Confidence 356999998865311 223456789999999998 99994 4443
No 76
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=93.65 E-value=1 Score=37.74 Aligned_cols=105 Identities=20% Similarity=0.211 Sum_probs=64.9
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCC
Q 044601 13 SSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTH 92 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~ 92 (213)
.++++||=||=|.=.++..|++..+....++ +.|..+++.+ .+.+|++.+.-.+...+..-|+.+.-. ...
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~--~iD~~~~~~~---~a~~~l~~~~~~~~v~~~~~d~~~~~~----~~~ 141 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVY--TVEIVKELAI---YAAQNIERLGYWGVVEVYHGDGKRGLE----KHA 141 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcCCCCEEE--EEeCCHHHHH---HHHHHHHHcCCCCcEEEEECCcccCCc----cCC
Confidence 4568999999999888888888875344555 4454344444 256666554322212244456654321 236
Q ss_pred cccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEecc
Q 044601 93 KFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKE 147 (213)
Q Consensus 93 ~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~ 147 (213)
.||+|+.+.+-.- + -......|+ ++|.+.+.+.+
T Consensus 142 ~fD~Ii~~~~~~~----------~----------~~~l~~~L~-~gG~lvi~~~~ 175 (205)
T PRK13944 142 PFDAIIVTAAAST----------I----------PSALVRQLK-DGGVLVIPVEE 175 (205)
T ss_pred CccEEEEccCcch----------h----------hHHHHHhcC-cCcEEEEEEcC
Confidence 7999999865211 1 112446787 99999988754
No 77
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=93.05 E-value=1.2 Score=36.89 Aligned_cols=110 Identities=19% Similarity=0.241 Sum_probs=65.9
Q ss_pred EEecCChhHHHHHHHHhCCC------CeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCCc
Q 044601 20 LVGEGDFSFSLCLAREFGFA------HNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTHK 93 (213)
Q Consensus 20 lVGEGnFSFS~aLa~~~~~~------~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~~ 93 (213)
.+|-|.+---.++......+ ..+++.-.| .+.+ + .+..|++...-.+..-+...|+++|. +....
T Consensus 36 ~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~-~~~v-~---~a~~N~~~ag~~~~i~~~~~D~~~l~----~~~~~ 106 (179)
T PF01170_consen 36 FCGSGTILIEAALMGANIPPLNDINELKIIGSDID-PKAV-R---GARENLKAAGVEDYIDFIQWDARELP----LPDGS 106 (179)
T ss_dssp T-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESS-HHHH-H---HHHHHHHHTT-CGGEEEEE--GGGGG----GTTSB
T ss_pred CCCCCHHHHHHHHHhhCcccccccccccEEecCCC-HHHH-H---HHHHHHHhcccCCceEEEecchhhcc----cccCC
Confidence 47888887777775443210 125555444 2333 3 36777765443333445667999987 33568
Q ss_pred ccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEec
Q 044601 94 FDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHK 146 (213)
Q Consensus 94 FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~ 146 (213)
+|.||.|-|.=-.-+ .-..++.|...|++.++++|+ + ..+.|+..
T Consensus 107 ~d~IvtnPPyG~r~~------~~~~~~~ly~~~~~~~~~~l~-~-~~v~l~~~ 151 (179)
T PF01170_consen 107 VDAIVTNPPYGRRLG------SKKDLEKLYRQFLRELKRVLK-P-RAVFLTTS 151 (179)
T ss_dssp SCEEEEE--STTSHC------HHHHHHHHHHHHHHHHHCHST-T-CEEEEEES
T ss_pred CCEEEECcchhhhcc------CHHHHHHHHHHHHHHHHHHCC-C-CEEEEEEC
Confidence 999999999743221 123568999999999999997 5 66776664
No 78
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=93.04 E-value=1.1 Score=38.55 Aligned_cols=109 Identities=12% Similarity=0.131 Sum_probs=64.7
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhC-CCEEEEeeeccccCCCccccC
Q 044601 13 SSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEER-GCLVFYGVDAMQMSQHFFLRT 91 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~-g~~V~~gVDAt~L~~~~~l~~ 91 (213)
.++.+||-||=|.=..+..|++.+. ......|..|.-.++.+. +..+++..... .+.+ +.-|+..+. .
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~-~~~~~v~gvD~S~~ml~~---A~~~~~~~~~~~~v~~-~~~d~~~~~------~ 123 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIH-HDNCKIIAIDNSPAMIER---CRRHIDAYKAPTPVDV-IEGDIRDIA------I 123 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcC-CCCCeEEEEeCCHHHHHH---HHHHHHhcCCCCCeEE-EeCChhhCC------C
Confidence 4678999997776566666776532 123345566744444442 55555443221 2333 455665542 1
Q ss_pred CcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEe
Q 044601 92 HKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTH 145 (213)
Q Consensus 92 ~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl 145 (213)
..+|.|+.|+...-. +..-...+++.+..+|+ |+|.+.++-
T Consensus 124 ~~~D~vv~~~~l~~l------------~~~~~~~~l~~i~~~Lk-pGG~l~l~e 164 (247)
T PRK15451 124 ENASMVVLNFTLQFL------------EPSERQALLDKIYQGLN-PGGALVLSE 164 (247)
T ss_pred CCCCEEehhhHHHhC------------CHHHHHHHHHHHHHhcC-CCCEEEEEE
Confidence 348999988753211 11113477888899998 999998874
No 79
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=93.02 E-value=2.1 Score=35.61 Aligned_cols=136 Identities=24% Similarity=0.202 Sum_probs=78.9
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCC-EEE-EeeeccccCCCccccC
Q 044601 14 SKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGC-LVF-YGVDAMQMSQHFFLRT 91 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~V~-~gVDAt~L~~~~~l~~ 91 (213)
...+||=+|-|.=+++..|++.. ..++++-.+. + +.+ .+..++ ...+. .+. ...|+.++.... .
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~---~~v~~iD~s~-~-~~~---~a~~~~---~~~~~~~~~~~~~d~~~~~~~~---~ 110 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG---ANVTGIDASE-E-NIE---VAKLHA---KKDPLLKIEYRCTSVEDLAEKG---A 110 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCH-H-HHH---HHHHHH---HHcCCCceEEEeCCHHHhhcCC---C
Confidence 47899999998877888787653 3466655542 2 211 122222 22333 232 234555443221 3
Q ss_pred CcccEEEEcCC--cCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCCC-------------------
Q 044601 92 HKFDRVIYNFP--HVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGDP------------------- 150 (213)
Q Consensus 92 ~~FDrIiFNFP--H~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~p------------------- 150 (213)
.+||.|+.++. |+.. ...++.++..+|+ ++|.|.++.....+
T Consensus 111 ~~~D~i~~~~~l~~~~~----------------~~~~l~~~~~~L~-~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (224)
T TIGR01983 111 KSFDVVTCMEVLEHVPD----------------PQAFIRACAQLLK-PGGILFFSTINRTPKSYLLAIVGAEYILRIVPK 173 (224)
T ss_pred CCccEEEehhHHHhCCC----------------HHHHHHHHHHhcC-CCcEEEEEecCCCchHHHHHHHhhhhhhhcCCC
Confidence 68999998642 2221 2368899999998 99999887542211
Q ss_pred -------CCc-ccHHhHHHHhCcEEEEEeecCCCCCCCCcc
Q 044601 151 -------YNK-WELVKKAEKIGLTLQEVVPFCKQDYPGYDN 183 (213)
Q Consensus 151 -------y~~-W~i~~lA~~~gl~l~~~~~F~~~~yPgY~~ 183 (213)
+-+ =++.++.+.+|+.+.+...+- |+++..
T Consensus 174 ~~~~~~~~~~~~~l~~~l~~~G~~i~~~~~~~---~~~~~~ 211 (224)
T TIGR01983 174 GTHDWEKFIKPSELTSWLESAGLRVKDVKGLV---YNPIKN 211 (224)
T ss_pred CcCChhhcCCHHHHHHHHHHcCCeeeeeeeEE---eehhhc
Confidence 101 136678888888888775442 444444
No 80
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=92.38 E-value=1.7 Score=40.37 Aligned_cols=100 Identities=20% Similarity=0.248 Sum_probs=64.3
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCC
Q 044601 13 SSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTH 92 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~ 92 (213)
.++++||-||=|.=.++..|++..+ ..|++..+. ++.+. .+.++++ ..++.+. -.|+..+ ..
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~g--~~V~giDlS-~~~l~----~A~~~~~---~l~v~~~-~~D~~~l-------~~ 227 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHYG--VSVVGVTIS-AEQQK----LAQERCA---GLPVEIR-LQDYRDL-------NG 227 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHCC--CEEEEEeCC-HHHHH----HHHHHhc---cCeEEEE-ECchhhc-------CC
Confidence 5678999999988888888888764 577776655 32222 1334432 1223322 2344333 35
Q ss_pred cccEEEEc--CCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEe
Q 044601 93 KFDRVIYN--FPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTH 145 (213)
Q Consensus 93 ~FDrIiFN--FPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl 145 (213)
.||.|+-+ |-|+|.. -+..+|+.+..+|+ |+|.+.|..
T Consensus 228 ~fD~Ivs~~~~ehvg~~--------------~~~~~l~~i~r~Lk-pGG~lvl~~ 267 (383)
T PRK11705 228 QFDRIVSVGMFEHVGPK--------------NYRTYFEVVRRCLK-PDGLFLLHT 267 (383)
T ss_pred CCCEEEEeCchhhCChH--------------HHHHHHHHHHHHcC-CCcEEEEEE
Confidence 79999754 5566631 13478899999998 999988754
No 81
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=92.17 E-value=0.46 Score=34.86 Aligned_cols=98 Identities=27% Similarity=0.340 Sum_probs=56.3
Q ss_pred EEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCCcccEE
Q 044601 18 ILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTHKFDRV 97 (213)
Q Consensus 18 ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~~FDrI 97 (213)
||=+|=|.=.....|++.+..+.+...+..|-..++.+. +.++... ....++ .+--|++++.. ...+||.|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~---~~~~~~~-~~~~~~-~~~~D~~~l~~----~~~~~D~v 71 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLEL---AKKRFSE-DGPKVR-FVQADARDLPF----SDGKFDLV 71 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHH---HHHHSHH-TTTTSE-EEESCTTCHHH----HSSSEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHH---HHHhchh-cCCceE-EEECCHhHCcc----cCCCeeEE
Confidence 566788888888899888722223444555632333321 3333333 122344 46778877642 35689999
Q ss_pred EEc---CCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCC
Q 044601 98 IYN---FPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENG 139 (213)
Q Consensus 98 iFN---FPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G 139 (213)
++. +.| ..+.-+..+|+++.++|+ |+|
T Consensus 72 ~~~~~~~~~--------------~~~~~~~~ll~~~~~~l~-pgG 101 (101)
T PF13649_consen 72 VCSGLSLHH--------------LSPEELEALLRRIARLLR-PGG 101 (101)
T ss_dssp EE-TTGGGG--------------SSHHHHHHHHHHHHHTEE-EEE
T ss_pred EEcCCccCC--------------CCHHHHHHHHHHHHHHhC-CCC
Confidence 993 333 234556788888899997 766
No 82
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=92.16 E-value=2.5 Score=35.95 Aligned_cols=107 Identities=13% Similarity=0.133 Sum_probs=65.7
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhC-CCCeEEEeccCCHHHHHhhcchHHHHHHHHHh-CCCEEEEeeeccccCCCcccc
Q 044601 13 SSKQRILLVGEGDFSFSLCLAREFG-FAHNMVATCLDTQETIANKYSNAVDNVRELEE-RGCLVFYGVDAMQMSQHFFLR 90 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~aLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~-~g~~V~~gVDAt~L~~~~~l~ 90 (213)
.+..+||=||=|.=.++..|++.+. ++.+++ .+|-.+++.+ .+..++..... ..+++ ..-|+.++.
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~--gvD~s~~ml~---~a~~~~~~~~~~~~v~~-~~~d~~~~~------ 119 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKII--GIDNSQPMVE---RCRQHIAAYHSEIPVEI-LCNDIRHVE------ 119 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEE--EEeCCHHHHH---HHHHHHHhcCCCCCeEE-EECChhhCC------
Confidence 4678999999998889999998753 244444 5553334443 24555543321 12444 344776653
Q ss_pred CCcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEE
Q 044601 91 THKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVT 144 (213)
Q Consensus 91 ~~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvT 144 (213)
...+|.|+.++...-. +..-...+++.+..+|+ |+|.+.++
T Consensus 120 ~~~~d~v~~~~~l~~~------------~~~~~~~~l~~i~~~Lk-pgG~l~i~ 160 (239)
T TIGR00740 120 IKNASMVILNFTLQFL------------PPEDRIALLTKIYEGLN-PNGVLVLS 160 (239)
T ss_pred CCCCCEEeeecchhhC------------CHHHHHHHHHHHHHhcC-CCeEEEEe
Confidence 1248988887752111 00112367888899998 99998887
No 83
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=92.09 E-value=2.4 Score=39.90 Aligned_cols=131 Identities=20% Similarity=0.225 Sum_probs=80.3
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEE-EEeeeccccCCCccccC
Q 044601 13 SSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLV-FYGVDAMQMSQHFFLRT 91 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V-~~gVDAt~L~~~~~l~~ 91 (213)
.++.+||=||=|.=..+..|++.+ +..+++.-.. .+.+.. +..|.. ..+..| ....|+..+. +..
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS-~~~l~~----A~~~~~---~~~~~v~~~~~d~~~~~----~~~ 330 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLS-VNMISF----ALERAI---GRKCSVEFEVADCTKKT----YPD 330 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECC-HHHHHH----HHHHhh---cCCCceEEEEcCcccCC----CCC
Confidence 567899999988888888888876 3467666654 333332 344433 222233 2345665542 234
Q ss_pred CcccEEEEc--CCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEecc---CCCC------------Ccc
Q 044601 92 HKFDRVIYN--FPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKE---GDPY------------NKW 154 (213)
Q Consensus 92 ~~FDrIiFN--FPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~---~~py------------~~W 154 (213)
..||.|+.. +-|+.. ...+|+.+..+|+ |+|.+.|+-.. +.|. ...
T Consensus 331 ~~fD~I~s~~~l~h~~d----------------~~~~l~~~~r~Lk-pgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~ 393 (475)
T PLN02336 331 NSFDVIYSRDTILHIQD----------------KPALFRSFFKWLK-PGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLH 393 (475)
T ss_pred CCEEEEEECCcccccCC----------------HHHHHHHHHHHcC-CCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCC
Confidence 689999986 455542 1267888999998 99999887421 1111 111
Q ss_pred ---cHHhHHHHhCcEEEEEeecC
Q 044601 155 ---ELVKKAEKIGLTLQEVVPFC 174 (213)
Q Consensus 155 ---~i~~lA~~~gl~l~~~~~F~ 174 (213)
.+..+.+++||.......+.
T Consensus 394 ~~~~~~~~l~~aGF~~i~~~d~~ 416 (475)
T PLN02336 394 DVQAYGQMLKDAGFDDVIAEDRT 416 (475)
T ss_pred CHHHHHHHHHHCCCeeeeeecch
Confidence 12456778888887665443
No 84
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=92.00 E-value=1.7 Score=40.52 Aligned_cols=137 Identities=16% Similarity=0.104 Sum_probs=78.0
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCC
Q 044601 13 SSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTH 92 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~ 92 (213)
.+..+||=+|=|-=.||+.||+.. ..|+| .|..++..+ .+..|++...-.++.++. -|+.++-........
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~~---~~V~~--vE~~~~av~---~a~~n~~~~~~~nv~~~~-~d~~~~l~~~~~~~~ 361 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQA---KSVVG--IEVVPESVE---KAQQNAELNGIANVEFLA-GTLETVLPKQPWAGQ 361 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHhC---CEEEE--EEcCHHHHH---HHHHHHHHhCCCceEEEe-CCHHHHHHHHHhcCC
Confidence 445789888777777777787653 35555 453333333 366676544323454443 466553222212245
Q ss_pred cccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCCCCCc-ccHHhHHHHhCcEEEEEe
Q 044601 93 KFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGDPYNK-WELVKKAEKIGLTLQEVV 171 (213)
Q Consensus 93 ~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py~~-W~i~~lA~~~gl~l~~~~ 171 (213)
.||.||+|=|..|.. ..++.. ... ++ +++-|+|+. + |... -++..+ .+.||.+....
T Consensus 362 ~~D~vi~dPPr~G~~------------~~~l~~----l~~-l~-~~~ivyvsc-~--p~tlard~~~l-~~~gy~~~~~~ 419 (431)
T TIGR00479 362 IPDVLLLDPPRKGCA------------AEVLRT----IIE-LK-PERIVYVSC-N--PATLARDLEFL-CKEGYGITWVQ 419 (431)
T ss_pred CCCEEEECcCCCCCC------------HHHHHH----HHh-cC-CCEEEEEcC-C--HHHHHHHHHHH-HHCCeeEEEEE
Confidence 799999999988731 122222 122 55 666666653 2 4321 123333 35689999999
Q ss_pred ecCCCCCCCCc
Q 044601 172 PFCKQDYPGYD 182 (213)
Q Consensus 172 ~F~~~~yPgY~ 182 (213)
+|| .||.=.
T Consensus 420 ~~D--mFP~T~ 428 (431)
T TIGR00479 420 PVD--MFPHTA 428 (431)
T ss_pred Eec--cCCCCC
Confidence 997 577533
No 85
>PLN02823 spermine synthase
Probab=91.91 E-value=0.81 Score=42.02 Aligned_cols=115 Identities=17% Similarity=0.144 Sum_probs=68.9
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCH-HHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCC
Q 044601 14 SKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQ-ETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTH 92 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~-~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~ 92 (213)
+.++||++|=|+-+-++-++++. +...|++--+|.+ -++.++|-.. +-..+..-.++|+. -||-+.-+. ...
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~--~~~~~~dprv~v~~-~Da~~~L~~---~~~ 175 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTV--NREAFCDKRLELII-NDARAELEK---RDE 175 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhccc--ccccccCCceEEEE-ChhHHHHhh---CCC
Confidence 46899999999999988888764 3567888888843 2333443211 11123344455543 345443221 246
Q ss_pred cccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHH-HHHhhcccCCCeEEEE
Q 044601 93 KFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLR-NAKLLLKEENGEIHVT 144 (213)
Q Consensus 93 ~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~-Sa~~~L~~~~G~ihvT 144 (213)
+||.||.+.|..-..+. ..+..=..||+ .++..|+ ++|-+.+-
T Consensus 176 ~yDvIi~D~~dp~~~~~--------~~~Lyt~eF~~~~~~~~L~-p~Gvlv~q 219 (336)
T PLN02823 176 KFDVIIGDLADPVEGGP--------CYQLYTKSFYERIVKPKLN-PGGIFVTQ 219 (336)
T ss_pred CccEEEecCCCccccCc--------chhhccHHHHHHHHHHhcC-CCcEEEEe
Confidence 79999999864211010 11122347888 8999998 99976543
No 86
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=91.91 E-value=0.67 Score=39.70 Aligned_cols=106 Identities=22% Similarity=0.243 Sum_probs=67.4
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccC
Q 044601 12 YSSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRT 91 (213)
Q Consensus 12 y~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~ 91 (213)
-.++++||-||=|-==+|..|++..+....++ +.|..++|.+ .|..|++.+.-.++.++++ |+..-. . ..
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv--~vE~~~~l~~---~A~~~l~~~~~~nv~~~~g-dg~~g~--~--~~ 139 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVV--SVERDPELAE---RARRNLARLGIDNVEVVVG-DGSEGW--P--EE 139 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEE--EEESBHHHHH---HHHHHHHHHTTHSEEEEES--GGGTT--G--GG
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCccceEE--EECccHHHHH---HHHHHHHHhccCceeEEEc-chhhcc--c--cC
Confidence 46789999999996666777777765333344 5666667776 4788999887777888776 554322 1 24
Q ss_pred CcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccC
Q 044601 92 HKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEG 148 (213)
Q Consensus 92 ~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~ 148 (213)
..||+|+.+.--..- -. .+ .+.|+ ++|.+.+-+.++
T Consensus 140 apfD~I~v~~a~~~i------------p~----~l----~~qL~-~gGrLV~pi~~~ 175 (209)
T PF01135_consen 140 APFDRIIVTAAVPEI------------PE----AL----LEQLK-PGGRLVAPIGQG 175 (209)
T ss_dssp -SEEEEEESSBBSS--------------H----HH----HHTEE-EEEEEEEEESSS
T ss_pred CCcCEEEEeeccchH------------HH----HH----HHhcC-CCcEEEEEEccC
Confidence 679999998633221 01 12 34577 999999988763
No 87
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=91.25 E-value=2.8 Score=37.88 Aligned_cols=137 Identities=22% Similarity=0.296 Sum_probs=91.0
Q ss_pred CCCCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCcccc
Q 044601 11 HYSSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLR 90 (213)
Q Consensus 11 ~y~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~ 90 (213)
+-.++++||=+|=|==+.+.=.|+++ +++||+.++.. +++. .+ -+.+++.|....-.|-... ...+.
T Consensus 69 ~L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~-~Q~~----~~---~~r~~~~gl~~~v~v~l~d---~rd~~ 135 (283)
T COG2230 69 GLKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSE-EQLA----YA---EKRIAARGLEDNVEVRLQD---YRDFE 135 (283)
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCH-HHHH----HH---HHHHHHcCCCcccEEEecc---ccccc
Confidence 44678999999999888888889998 58999999973 2221 12 2346667765222222222 22222
Q ss_pred CCcccEEEE--cCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEE-EeccCC-CC---------------
Q 044601 91 THKFDRVIY--NFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHV-THKEGD-PY--------------- 151 (213)
Q Consensus 91 ~~~FDrIiF--NFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihv-Tl~~~~-py--------------- 151 (213)
.+|||||- .|=|+|... ...||..+..+|. ++|.+.+ ++-... ++
T Consensus 136 -e~fDrIvSvgmfEhvg~~~--------------~~~ff~~~~~~L~-~~G~~llh~I~~~~~~~~~~~~~i~~yiFPgG 199 (283)
T COG2230 136 -EPFDRIVSVGMFEHVGKEN--------------YDDFFKKVYALLK-PGGRMLLHSITGPDQEFRRFPDFIDKYIFPGG 199 (283)
T ss_pred -cccceeeehhhHHHhCccc--------------HHHHHHHHHhhcC-CCceEEEEEecCCCcccccchHHHHHhCCCCC
Confidence 44999986 577887521 3589999999998 9998433 221111 11
Q ss_pred ---CcccHHhHHHHhCcEEEEEeecCCC
Q 044601 152 ---NKWELVKKAEKIGLTLQEVVPFCKQ 176 (213)
Q Consensus 152 ---~~W~i~~lA~~~gl~l~~~~~F~~~ 176 (213)
+...|...+.++|+.+.....|.+.
T Consensus 200 ~lPs~~~i~~~~~~~~~~v~~~~~~~~h 227 (283)
T COG2230 200 ELPSISEILELASEAGFVVLDVESLRPH 227 (283)
T ss_pred cCCCHHHHHHHHHhcCcEEehHhhhcHH
Confidence 2356667788899999988888764
No 88
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=91.15 E-value=1.6 Score=30.43 Aligned_cols=95 Identities=23% Similarity=0.280 Sum_probs=58.6
Q ss_pred EEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCCcccEEE
Q 044601 19 LLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTHKFDRVI 98 (213)
Q Consensus 19 LlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~~FDrIi 98 (213)
|=+|=|+=.++..|++. .+.+++++-.+.+ ..+. + -+.++..++. ....|+++| ++....||.|+
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~--~~~~---~---~~~~~~~~~~-~~~~d~~~l----~~~~~sfD~v~ 65 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEE--MLEQ---A---RKRLKNEGVS-FRQGDAEDL----PFPDNSFDVVF 65 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HH--HHHH---H---HHHTTTSTEE-EEESBTTSS----SS-TT-EEEEE
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHH--HHHH---H---HhcccccCch-heeehHHhC----ccccccccccc
Confidence 34667777888888887 4678888766632 1111 1 1223334455 666777777 33478999998
Q ss_pred EcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEE
Q 044601 99 YNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHV 143 (213)
Q Consensus 99 FNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihv 143 (213)
.+.=..=. .=...+++.+.++|+ |+|.+.|
T Consensus 66 ~~~~~~~~--------------~~~~~~l~e~~rvLk-~gG~l~~ 95 (95)
T PF08241_consen 66 SNSVLHHL--------------EDPEAALREIYRVLK-PGGRLVI 95 (95)
T ss_dssp EESHGGGS--------------SHHHHHHHHHHHHEE-EEEEEEE
T ss_pred cccceeec--------------cCHHHHHHHHHHHcC-cCeEEeC
Confidence 87422111 234578899999998 9998875
No 89
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=91.08 E-value=5.2 Score=33.22 Aligned_cols=101 Identities=16% Similarity=0.099 Sum_probs=60.8
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEE-EeeeccccCCCccccCC
Q 044601 14 SKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVF-YGVDAMQMSQHFFLRTH 92 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~-~gVDAt~L~~~~~l~~~ 92 (213)
+..+||=+|-|.=.+|..|++. +..|+|. |-.+++.++ +..+. +..|+.|. ...|+..+ .+ ..
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~---g~~V~~i--D~s~~~l~~---a~~~~---~~~~~~v~~~~~d~~~~----~~-~~ 93 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLA---GYDVRAW--DHNPASIAS---VLDMK---ARENLPLRTDAYDINAA----AL-NE 93 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHC---CCeEEEE--ECCHHHHHH---HHHHH---HHhCCCceeEeccchhc----cc-cC
Confidence 3579999999999999999974 3466665 532333332 22222 23344321 22343322 12 24
Q ss_pred cccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEE
Q 044601 93 KFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHV 143 (213)
Q Consensus 93 ~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihv 143 (213)
.||.|+-+++..- .+...+..+++++..+|+ |+|.+.|
T Consensus 94 ~fD~I~~~~~~~~------------~~~~~~~~~l~~~~~~Lk-pgG~lli 131 (195)
T TIGR00477 94 DYDFIFSTVVFMF------------LQAGRVPEIIANMQAHTR-PGGYNLI 131 (195)
T ss_pred CCCEEEEeccccc------------CCHHHHHHHHHHHHHHhC-CCcEEEE
Confidence 6999998866322 122445678999999998 9998443
No 90
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=90.88 E-value=9.8 Score=32.82 Aligned_cols=120 Identities=23% Similarity=0.291 Sum_probs=69.1
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCC
Q 044601 13 SSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTH 92 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~ 92 (213)
.++++||-||=|.=-.+.+++ ..+ +..++|+-.+. ..+ + .+.+|++ ..++... ++ +.. ...
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~-~~g-~~~v~giDis~-~~l-~---~A~~n~~---~~~~~~~--~~---~~~----~~~ 178 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAA-KLG-AKKVLAVDIDP-QAV-E---AARENAE---LNGVELN--VY---LPQ----GDL 178 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHH-HcC-CCeEEEEECCH-HHH-H---HHHHHHH---HcCCCce--EE---Ecc----CCC
Confidence 467899999999733333333 344 34577765552 222 2 2455543 3343110 11 110 012
Q ss_pred cccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCCCCCcccHHhHHHHhCcEEEEEe
Q 044601 93 KFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGDPYNKWELVKKAEKIGLTLQEVV 171 (213)
Q Consensus 93 ~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py~~W~i~~lA~~~gl~l~~~~ 171 (213)
.||.|+.|... ..+..++..+..+|+ ++|.+.++-... ...-.+....+..||.+.+..
T Consensus 179 ~fD~Vvani~~-----------------~~~~~l~~~~~~~Lk-pgG~lilsgi~~--~~~~~v~~~l~~~Gf~~~~~~ 237 (250)
T PRK00517 179 KADVIVANILA-----------------NPLLELAPDLARLLK-PGGRLILSGILE--EQADEVLEAYEEAGFTLDEVL 237 (250)
T ss_pred CcCEEEEcCcH-----------------HHHHHHHHHHHHhcC-CCcEEEEEECcH--hhHHHHHHHHHHCCCEEEEEE
Confidence 79999988421 224567788899998 999998873211 123356667778899887653
No 91
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=90.65 E-value=4.8 Score=35.65 Aligned_cols=105 Identities=17% Similarity=0.190 Sum_probs=64.5
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhC-CCEEEEeeeccccCCCcccc
Q 044601 12 YSSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEER-GCLVFYGVDAMQMSQHFFLR 90 (213)
Q Consensus 12 y~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~-g~~V~~gVDAt~L~~~~~l~ 90 (213)
+++.++||=||=|.=+++.++++++. ++.+|.+|.. ++.+ .+.+|++...-. .+++ ..-|+-+.. .
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~p---~~~~~~~D~~-~~~~---~a~~~~~~~gl~~rv~~-~~~d~~~~~--~--- 213 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHFP---ELDSTILNLP-GAID---LVNENAAEKGVADRMRG-IAVDIYKES--Y--- 213 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHCC---CCEEEEEecH-HHHH---HHHHHHHhCCccceEEE-EecCccCCC--C---
Confidence 56778999999999899999999973 3445677764 3333 245555443211 1233 333554321 1
Q ss_pred CCcccEEEEcC-CcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEE
Q 044601 91 THKFDRVIYNF-PHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVT 144 (213)
Q Consensus 91 ~~~FDrIiFNF-PH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvT 144 (213)
..+|.|++.. .|.- +.......|+.+...|+ |+|.+.|.
T Consensus 214 -~~~D~v~~~~~lh~~-------------~~~~~~~il~~~~~~L~-pgG~l~i~ 253 (306)
T TIGR02716 214 -PEADAVLFCRILYSA-------------NEQLSTIMCKKAFDAMR-SGGRLLIL 253 (306)
T ss_pred -CCCCEEEeEhhhhcC-------------ChHHHHHHHHHHHHhcC-CCCEEEEE
Confidence 2368876543 3322 22334466888899998 99998887
No 92
>PTZ00146 fibrillarin; Provisional
Probab=90.34 E-value=14 Score=33.59 Aligned_cols=135 Identities=16% Similarity=0.164 Sum_probs=82.0
Q ss_pred CCCCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCH--HHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCcc
Q 044601 11 HYSSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQ--ETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFF 88 (213)
Q Consensus 11 ~y~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~--~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~ 88 (213)
+.++.++||=+|=|.=+|+.-|+...+..-.|+|--+..+ ++|++. + . +..++..+. -||+...+...
T Consensus 129 ~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~---a-----k-~r~NI~~I~-~Da~~p~~y~~ 198 (293)
T PTZ00146 129 PIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNM---A-----K-KRPNIVPII-EDARYPQKYRM 198 (293)
T ss_pred ccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHH---h-----h-hcCCCEEEE-CCccChhhhhc
Confidence 4577899999999999999999998865557777544311 112221 1 0 113554444 37764322211
Q ss_pred ccCCcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCC-----C----CCcccHHhH
Q 044601 89 LRTHKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGD-----P----YNKWELVKK 159 (213)
Q Consensus 89 l~~~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~-----p----y~~W~i~~l 159 (213)
+ ...||+|+-+.... ++.+ .+..+|..+|+ ++|.+.|.++... | +. +.+ ..
T Consensus 199 ~-~~~vDvV~~Dva~p------dq~~----------il~~na~r~LK-pGG~~vI~ika~~id~g~~pe~~f~-~ev-~~ 258 (293)
T PTZ00146 199 L-VPMVDVIFADVAQP------DQAR----------IVALNAQYFLK-NGGHFIISIKANCIDSTAKPEVVFA-SEV-QK 258 (293)
T ss_pred c-cCCCCEEEEeCCCc------chHH----------HHHHHHHHhcc-CCCEEEEEEeccccccCCCHHHHHH-HHH-HH
Confidence 1 24699999988521 1111 22334888998 9999999765321 1 22 344 45
Q ss_pred HHHhCcEEEEEeecCC
Q 044601 160 AEKIGLTLQEVVPFCK 175 (213)
Q Consensus 160 A~~~gl~l~~~~~F~~ 175 (213)
.+++||..++.+...|
T Consensus 259 L~~~GF~~~e~v~L~P 274 (293)
T PTZ00146 259 LKKEGLKPKEQLTLEP 274 (293)
T ss_pred HHHcCCceEEEEecCC
Confidence 6788999888877643
No 93
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=90.30 E-value=2.8 Score=40.02 Aligned_cols=106 Identities=20% Similarity=0.176 Sum_probs=74.0
Q ss_pred HHhCCC--EEEEeeeccccC-CCccccCCcccEEEEcCCcCCC--ccccc------chHHHHhhHHHHHHHHHHHHhhcc
Q 044601 67 LEERGC--LVFYGVDAMQMS-QHFFLRTHKFDRVIYNFPHVGF--IFREN------SYCQIQLNKELVKGFLRNAKLLLK 135 (213)
Q Consensus 67 L~~~g~--~V~~gVDAt~L~-~~~~l~~~~FDrIiFNFPH~G~--~~~e~------~~~~i~~n~~Ll~~Ff~Sa~~~L~ 135 (213)
|.++|+ +|.-+-|+..+. +.+ ...||||.-+=|+.|. .++.. ....|.....|=+..|.||.++++
T Consensus 286 ~~rlGv~ntiv~n~D~~ef~~~~~---~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~ 362 (460)
T KOG1122|consen 286 LHRLGVTNTIVSNYDGREFPEKEF---PGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVK 362 (460)
T ss_pred HHHhCCCceEEEccCccccccccc---CcccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhcc
Confidence 344454 566677777653 222 2389999999999993 22222 235666778888899999999998
Q ss_pred cCCCeEEEEeccCCC-CCcccHHhHHHHh-CcEEEEEeecCCC
Q 044601 136 EENGEIHVTHKEGDP-YNKWELVKKAEKI-GLTLQEVVPFCKQ 176 (213)
Q Consensus 136 ~~~G~ihvTl~~~~p-y~~W~i~~lA~~~-gl~l~~~~~F~~~ 176 (213)
++|.+.-+-|+-.| -+.|.|..+-++. .+.|....++-..
T Consensus 363 -~GGvLVYSTCSI~~~ENE~vV~yaL~K~p~~kL~p~~~~iG~ 404 (460)
T KOG1122|consen 363 -AGGVLVYSTCSITVEENEAVVDYALKKRPEVKLVPTGLDIGG 404 (460)
T ss_pred -CCcEEEEEeeecchhhhHHHHHHHHHhCCceEeccccccCCC
Confidence 89988777776544 5789888754444 8888877665433
No 94
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=89.98 E-value=3.9 Score=35.17 Aligned_cols=99 Identities=19% Similarity=0.073 Sum_probs=62.8
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCC
Q 044601 13 SSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTH 92 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~ 92 (213)
.+..+||=||=|.=.++..|++.. +...+++.-.. +.+.+. + ++.++.++ ..|+..+. ...
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s--~~~~~~---a-------~~~~~~~~-~~d~~~~~-----~~~ 88 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSS--PEMVAA---A-------RERGVDAR-TGDVRDWK-----PKP 88 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECC--HHHHHH---H-------HhcCCcEE-EcChhhCC-----CCC
Confidence 456899999877777788888876 34566554443 333221 1 23356544 35766552 135
Q ss_pred cccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEe
Q 044601 93 KFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTH 145 (213)
Q Consensus 93 ~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl 145 (213)
.||.|+.|+..-=.. .. ..+++.+..+|+ |+|.+.++.
T Consensus 89 ~fD~v~~~~~l~~~~----------d~----~~~l~~~~~~Lk-pgG~l~~~~ 126 (255)
T PRK14103 89 DTDVVVSNAALQWVP----------EH----ADLLVRWVDELA-PGSWIAVQV 126 (255)
T ss_pred CceEEEEehhhhhCC----------CH----HHHHHHHHHhCC-CCcEEEEEc
Confidence 799999998642210 11 356777889998 999999875
No 95
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=89.96 E-value=5.5 Score=36.35 Aligned_cols=122 Identities=20% Similarity=0.215 Sum_probs=77.6
Q ss_pred CeEEEEecCChhHHHHHHHHhCCCCeEEEeccC-CHHHHHhhcchHHHHHHHHHhCC-CEEEEee-eccccCCCccccCC
Q 044601 16 QRILLVGEGDFSFSLCLAREFGFAHNMVATCLD-TQETIANKYSNAVDNVRELEERG-CLVFYGV-DAMQMSQHFFLRTH 92 (213)
Q Consensus 16 ~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~d-s~~~l~~kY~~a~~ni~~L~~~g-~~V~~gV-DAt~L~~~~~l~~~ 92 (213)
..||=||=|.=--|++|+..++ +.++|..| |...+.- +.+|.+.|+-.| +.|+|.+ --....++. +..+
T Consensus 150 ~~ildlgtGSGaIslsll~~L~---~~~v~AiD~S~~Ai~L----a~eN~qr~~l~g~i~v~~~~me~d~~~~~~-l~~~ 221 (328)
T KOG2904|consen 150 THILDLGTGSGAISLSLLHGLP---QCTVTAIDVSKAAIKL----AKENAQRLKLSGRIEVIHNIMESDASDEHP-LLEG 221 (328)
T ss_pred ceEEEecCCccHHHHHHHhcCC---CceEEEEeccHHHHHH----HHHHHHHHhhcCceEEEecccccccccccc-cccC
Confidence 4789999996666666666553 55555556 3433332 678999999876 4565442 222222332 3458
Q ss_pred cccEEEEcCCcCCCcccccchHHHHh------------hHHHHHHHHHHHHhhcccCCCeEEEEec
Q 044601 93 KFDRVIYNFPHVGFIFRENSYCQIQL------------NKELVKGFLRNAKLLLKEENGEIHVTHK 146 (213)
Q Consensus 93 ~FDrIiFNFPH~G~~~~e~~~~~i~~------------n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~ 146 (213)
+.|.||-|=|-+-..-.++-.-.++. --..+.+|+.-|..+|. ++|.+.+.+.
T Consensus 222 ~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq-~gg~~~le~~ 286 (328)
T KOG2904|consen 222 KIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQ-PGGFEQLELV 286 (328)
T ss_pred ceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcc-cCCeEEEEec
Confidence 89999999998874211110000111 23567899999999998 9999999986
No 96
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=89.54 E-value=2.7 Score=37.04 Aligned_cols=107 Identities=23% Similarity=0.220 Sum_probs=68.2
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCC
Q 044601 13 SSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTH 92 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~ 92 (213)
.++++||=.|-|.=|+|.+|++..++.-.| .|||-.++-.+ .|..|++...-.+...++.-|+.+-.-...+ ..
T Consensus 39 ~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v--~t~E~~~~~~~---~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~-~~ 112 (247)
T PF08704_consen 39 RPGSRVLEAGTGSGSLTHALARAVGPTGHV--YTYEFREDRAE---KARKNFERHGLDDNVTVHHRDVCEEGFDEEL-ES 112 (247)
T ss_dssp -TT-EEEEE--TTSHHHHHHHHHHTTTSEE--EEEESSHHHHH---HHHHHHHHTTCCTTEEEEES-GGCG--STT--TT
T ss_pred CCCCEEEEecCCcHHHHHHHHHHhCCCeEE--EccccCHHHHH---HHHHHHHHcCCCCCceeEecceecccccccc-cC
Confidence 568999999999999999999999755454 35776555444 4777777654334455666777642211111 36
Q ss_pred cccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhc-ccCCCeEEEEe
Q 044601 93 KFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLL-KEENGEIHVTH 145 (213)
Q Consensus 93 ~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L-~~~~G~ihvTl 145 (213)
.+|.|+-+-|..=- ...+|...| + ++|.|.+=+
T Consensus 113 ~~DavfLDlp~Pw~-------------------~i~~~~~~L~~-~gG~i~~fs 146 (247)
T PF08704_consen 113 DFDAVFLDLPDPWE-------------------AIPHAKRALKK-PGGRICCFS 146 (247)
T ss_dssp SEEEEEEESSSGGG-------------------GHHHHHHHE-E-EEEEEEEEE
T ss_pred cccEEEEeCCCHHH-------------------HHHHHHHHHhc-CCceEEEEC
Confidence 79999999998762 245567778 5 777665544
No 97
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=89.49 E-value=5.8 Score=36.21 Aligned_cols=104 Identities=21% Similarity=0.249 Sum_probs=62.1
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccC
Q 044601 12 YSSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRT 91 (213)
Q Consensus 12 y~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~ 91 (213)
-+++++||-+|-|.=.++..|++..+....|++. |..+++.+ .+.+|++.+.-.++.++.+ |+.+.... .
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgV--Dis~~~l~---~Ar~~l~~~g~~nV~~i~g-D~~~~~~~----~ 147 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSV--EYSRKICE---IAKRNVRRLGIENVIFVCG-DGYYGVPE----F 147 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEE--ECCHHHHH---HHHHHHHHcCCCcEEEEeC-Chhhcccc----c
Confidence 3567899999999888888888876533356654 43344444 3566665543333444433 66543221 2
Q ss_pred CcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEec
Q 044601 92 HKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHK 146 (213)
Q Consensus 92 ~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~ 146 (213)
..||.|+..+ |. .++ .. .....|+ ++|.+.+-+.
T Consensus 148 ~~fD~Ii~~~---g~-------~~i------p~----~~~~~Lk-pgG~Lvv~~~ 181 (322)
T PRK13943 148 APYDVIFVTV---GV-------DEV------PE----TWFTQLK-EGGRVIVPIN 181 (322)
T ss_pred CCccEEEECC---ch-------HHh------HH----HHHHhcC-CCCEEEEEeC
Confidence 4699999863 21 011 11 1235787 9999887653
No 98
>PHA03411 putative methyltransferase; Provisional
Probab=89.41 E-value=8.2 Score=34.82 Aligned_cols=136 Identities=17% Similarity=0.212 Sum_probs=78.4
Q ss_pred CCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCCcc
Q 044601 15 KQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTHKF 94 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~~F 94 (213)
..+||=+|=|.=-|+..+++..+ +.+|++.-.+. .+.+. +..|+ .++.+ ..-|+..+. ...+|
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp--~al~~---Ar~n~-----~~v~~-v~~D~~e~~-----~~~kF 127 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNP--EFARI---GKRLL-----PEAEW-ITSDVFEFE-----SNEKF 127 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCH--HHHHH---HHHhC-----cCCEE-EECchhhhc-----ccCCC
Confidence 46888775554455556665542 46787775553 22221 22222 13443 445665542 23679
Q ss_pred cEEEEcCCcCCCcccccchHHHHhh------HHH-HHHHHHHHHhhcccCCCeEEEEeccCCCCC-----cccHHhHHHH
Q 044601 95 DRVIYNFPHVGFIFRENSYCQIQLN------KEL-VKGFLRNAKLLLKEENGEIHVTHKEGDPYN-----KWELVKKAEK 162 (213)
Q Consensus 95 DrIiFNFPH~G~~~~e~~~~~i~~n------~~L-l~~Ff~Sa~~~L~~~~G~ihvTl~~~~py~-----~W~i~~lA~~ 162 (213)
|.||.|-|...... +++....... ..| +..|++....+|. |+|.+.+. -.+.|+. .=....+-+.
T Consensus 128 DlIIsNPPF~~l~~-~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~-p~G~~~~~-yss~~~y~~sl~~~~y~~~l~~ 204 (279)
T PHA03411 128 DVVISNPPFGKINT-TDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIV-PTGSAGFA-YSGRPYYDGTMKSNKYLKWSKQ 204 (279)
T ss_pred cEEEEcCCccccCc-hhhhhhhhhccCccccccccHHHHHhhhHheec-CCceEEEE-EeccccccccCCHHHHHHHHHh
Confidence 99999999987432 2222222221 233 7899999999998 99955544 5566642 1233356677
Q ss_pred hCcEEEEE
Q 044601 163 IGLTLQEV 170 (213)
Q Consensus 163 ~gl~l~~~ 170 (213)
+||++..-
T Consensus 205 ~g~~~~~~ 212 (279)
T PHA03411 205 TGLVTYAG 212 (279)
T ss_pred cCcEecCC
Confidence 78876443
No 99
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=89.14 E-value=11 Score=31.90 Aligned_cols=103 Identities=16% Similarity=0.157 Sum_probs=62.1
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCC
Q 044601 13 SSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTH 92 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~ 92 (213)
.++++||=||-|.=.+|..|++..+....+++ .|-.+++.+ .+..|++.+.-.++. +..-|+.... . ...
T Consensus 75 ~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~--vE~~~~~~~---~a~~~l~~~g~~~v~-~~~gd~~~~~--~--~~~ 144 (212)
T PRK13942 75 KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVT--IERIPELAE---KAKKTLKKLGYDNVE-VIVGDGTLGY--E--ENA 144 (212)
T ss_pred CCcCEEEEECCcccHHHHHHHHhcCCCCEEEE--EeCCHHHHH---HHHHHHHHcCCCCeE-EEECCcccCC--C--cCC
Confidence 56799999999988888888888754445554 444344544 255666544322233 3334554321 1 246
Q ss_pred cccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEec
Q 044601 93 KFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHK 146 (213)
Q Consensus 93 ~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~ 146 (213)
.||+|+.+.- . + .+... ..+.|+ ++|.+.+.+.
T Consensus 145 ~fD~I~~~~~---~---~----------~~~~~----l~~~Lk-pgG~lvi~~~ 177 (212)
T PRK13942 145 PYDRIYVTAA---G---P----------DIPKP----LIEQLK-DGGIMVIPVG 177 (212)
T ss_pred CcCEEEECCC---c---c----------cchHH----HHHhhC-CCcEEEEEEc
Confidence 7999997531 1 1 11112 234787 9999988874
No 100
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=89.08 E-value=7.6 Score=36.55 Aligned_cols=138 Identities=19% Similarity=0.196 Sum_probs=79.1
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCC
Q 044601 13 SSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTH 92 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~ 92 (213)
.++.+||=+|=|.=.||++||+.. ..++| .|..++..+ .+..|++...-.++. ...-|+.+.-....+...
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~---~~V~g--vD~s~~al~---~A~~n~~~~~~~~v~-~~~~d~~~~l~~~~~~~~ 366 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQA---AEVVG--VEGVEAMVE---RARENARRNGLDNVT-FYHANLEEDFTDQPWALG 366 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhC---CEEEE--EeCCHHHHH---HHHHHHHHcCCCceE-EEEeChHHhhhhhhhhcC
Confidence 356788877777777777888763 35665 453333333 356666544322333 445566543221112245
Q ss_pred cccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCCCCCcccHHhHHHHhCcEEEEEee
Q 044601 93 KFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGDPYNKWELVKKAEKIGLTLQEVVP 172 (213)
Q Consensus 93 ~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py~~W~i~~lA~~~gl~l~~~~~ 172 (213)
.||.||.|=|..|.. .++. .... +. +++-|+|+-.... --=++..|. +.||.+.+..|
T Consensus 367 ~fD~Vi~dPPr~g~~-------------~~~~----~l~~-~~-~~~ivyvSCnp~t--laRDl~~L~-~~gY~l~~i~~ 424 (443)
T PRK13168 367 GFDKVLLDPPRAGAA-------------EVMQ----ALAK-LG-PKRIVYVSCNPAT--LARDAGVLV-EAGYRLKRAGM 424 (443)
T ss_pred CCCEEEECcCCcChH-------------HHHH----HHHh-cC-CCeEEEEEeChHH--hhccHHHHh-hCCcEEEEEEE
Confidence 799999999999841 1111 1111 45 7777777753222 122344442 56899999999
Q ss_pred cCCCCCCCCcc
Q 044601 173 FCKQDYPGYDN 183 (213)
Q Consensus 173 F~~~~yPgY~~ 183 (213)
|| .||.=.|
T Consensus 425 ~D--mFP~T~H 433 (443)
T PRK13168 425 LD--MFPHTGH 433 (443)
T ss_pred ec--cCCCCCc
Confidence 97 6775443
No 101
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=88.79 E-value=7.8 Score=32.25 Aligned_cols=100 Identities=21% Similarity=0.206 Sum_probs=57.8
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCC
Q 044601 13 SSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTH 92 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~ 92 (213)
.++++||=||-|.=.++..|++.. + .+++ .|..+++.+ .+.+|++.+.-.++.+..+ |+.+. .. ...
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~--~-~v~~--vd~~~~~~~---~a~~~~~~~~~~~v~~~~~-d~~~~--~~--~~~ 143 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLV--R-RVFS--VERIKTLQW---EAKRRLKQLGLHNVSVRHG-DGWKG--WP--AYA 143 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHh--C-EEEE--EeCCHHHHH---HHHHHHHHCCCCceEEEEC-CcccC--CC--cCC
Confidence 457899999998766676677653 2 4544 453344444 2555655542223444333 44321 11 136
Q ss_pred cccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEec
Q 044601 93 KFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHK 146 (213)
Q Consensus 93 ~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~ 146 (213)
.||+|+.+.+... + .......|+ ++|.+.+...
T Consensus 144 ~fD~I~~~~~~~~----------~----------~~~l~~~L~-~gG~lv~~~~ 176 (212)
T PRK00312 144 PFDRILVTAAAPE----------I----------PRALLEQLK-EGGILVAPVG 176 (212)
T ss_pred CcCEEEEccCchh----------h----------hHHHHHhcC-CCcEEEEEEc
Confidence 7999999864211 1 112346887 9999988875
No 102
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=88.78 E-value=6.8 Score=33.50 Aligned_cols=102 Identities=13% Similarity=0.099 Sum_probs=65.1
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCC
Q 044601 13 SSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTH 92 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~ 92 (213)
.+..+||=||-|.=.++..|++.++ +.++++.-.. +.+.+. +..++ .++.+ ...|+..+. ...
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s--~~~i~~---a~~~~-----~~~~~-~~~d~~~~~-----~~~ 92 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWP-AARITGIDSS--PAMLAE---ARSRL-----PDCQF-VEADIASWQ-----PPQ 92 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCC-CCEEEEEECC--HHHHHH---HHHhC-----CCCeE-EECchhccC-----CCC
Confidence 5678999999888888889988863 5577776544 233321 22221 12333 345665542 135
Q ss_pred cccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEec
Q 044601 93 KFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHK 146 (213)
Q Consensus 93 ~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~ 146 (213)
.||.|+.|+..--.. . ...+++.+..+|+ ++|.+.++..
T Consensus 93 ~fD~v~~~~~l~~~~----------d----~~~~l~~~~~~Lk-pgG~~~~~~~ 131 (258)
T PRK01683 93 ALDLIFANASLQWLP----------D----HLELFPRLVSLLA-PGGVLAVQMP 131 (258)
T ss_pred CccEEEEccChhhCC----------C----HHHHHHHHHHhcC-CCcEEEEECC
Confidence 899999997632211 1 1357788888998 9999998763
No 103
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=88.10 E-value=7 Score=34.47 Aligned_cols=101 Identities=17% Similarity=0.147 Sum_probs=60.1
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEE-EeeeccccCCCccccCC
Q 044601 14 SKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVF-YGVDAMQMSQHFFLRTH 92 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~-~gVDAt~L~~~~~l~~~ 92 (213)
+..+||=||=|.=.++..|++. +..|+|. |..++..+. +..+.+ ..|..|. ...|+.... + ..
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~---g~~V~av--D~s~~ai~~---~~~~~~---~~~l~v~~~~~D~~~~~----~-~~ 183 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL---GFDVTAV--DINQQSLEN---LQEIAE---KENLNIRTGLYDINSAS----I-QE 183 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC---CCEEEEE--ECCHHHHHH---HHHHHH---HcCCceEEEEechhccc----c-cC
Confidence 4569999998877777778764 3566655 533333331 333332 2343322 123443321 1 46
Q ss_pred cccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEE
Q 044601 93 KFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHV 143 (213)
Q Consensus 93 ~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihv 143 (213)
.||.|+-++...- .++..+..+++.+..+|+ ++|.+.+
T Consensus 184 ~fD~I~~~~vl~~------------l~~~~~~~~l~~~~~~Lk-pgG~~l~ 221 (287)
T PRK12335 184 EYDFILSTVVLMF------------LNRERIPAIIKNMQEHTN-PGGYNLI 221 (287)
T ss_pred CccEEEEcchhhh------------CCHHHHHHHHHHHHHhcC-CCcEEEE
Confidence 7999998764211 233456688999999998 9999554
No 104
>PRK00536 speE spermidine synthase; Provisional
Probab=87.95 E-value=6.1 Score=35.18 Aligned_cols=99 Identities=13% Similarity=0.074 Sum_probs=64.0
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCH-HHHHhh-cchHHHHHHHHHhCCCEEEEeeeccccCCCccccC
Q 044601 14 SKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQ-ETIANK-YSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRT 91 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~-~~l~~k-Y~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~ 91 (213)
+.+|||++|=||=-=++-++|+- .+|+---.|.+ =++.++ .|... ..+.+--++++..+ .+. ..
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~---~~v~mVeID~~Vv~~~k~~lP~~~---~~~~DpRv~l~~~~-----~~~---~~ 137 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYD---THVDFVQADEKILDSFISFFPHFH---EVKNNKNFTHAKQL-----LDL---DI 137 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcC---CeeEEEECCHHHHHHHHHHCHHHH---HhhcCCCEEEeehh-----hhc---cC
Confidence 46999999999987777777662 37777777743 234444 34322 35666667776521 111 13
Q ss_pred CcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEecc
Q 044601 92 HKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKE 147 (213)
Q Consensus 92 ~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~ 147 (213)
++||.||-+-... ..|++.+++.|+ ++|-+ ||-..
T Consensus 138 ~~fDVIIvDs~~~-------------------~~fy~~~~~~L~-~~Gi~-v~Qs~ 172 (262)
T PRK00536 138 KKYDLIICLQEPD-------------------IHKIDGLKRMLK-EDGVF-ISVAK 172 (262)
T ss_pred CcCCEEEEcCCCC-------------------hHHHHHHHHhcC-CCcEE-EECCC
Confidence 6799999983200 379999999998 77755 44433
No 105
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=87.14 E-value=18 Score=32.18 Aligned_cols=137 Identities=23% Similarity=0.230 Sum_probs=80.2
Q ss_pred eEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCCcccE
Q 044601 17 RILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTHKFDR 96 (213)
Q Consensus 17 ~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~~FDr 96 (213)
+||=+|=|.=-=|.+|+.+.. ..+|+||=... +.|.- |..|.+.+ |+.-++.|+. .+-.. ++ .+||.
T Consensus 113 ~ilDlGTGSG~iai~la~~~~-~~~V~a~Dis~-~Al~~----A~~Na~~~---~l~~~~~~~~-dlf~~--~~-~~fDl 179 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGP-DAEVIAVDISP-DALAL----ARENAERN---GLVRVLVVQS-DLFEP--LR-GKFDL 179 (280)
T ss_pred cEEEecCChHHHHHHHHhhCc-CCeEEEEECCH-HHHHH----HHHHHHHc---CCccEEEEee-ecccc--cC-CceeE
Confidence 798888886556666666653 45888886653 33333 45555443 3211233333 33222 22 38999
Q ss_pred EEEcCCcCCCcccccchHHHH-----------hhHHHHHHHHHHHHhhcccCCCeEEEEeccCCCCCcccHHhHHHHhC-
Q 044601 97 VIYNFPHVGFIFRENSYCQIQ-----------LNKELVKGFLRNAKLLLKEENGEIHVTHKEGDPYNKWELVKKAEKIG- 164 (213)
Q Consensus 97 IiFNFPH~G~~~~e~~~~~i~-----------~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py~~W~i~~lA~~~g- 164 (213)
||+|=|=+.....+.....++ .-..+++.|+..+..+|+ ++|.+.+-+-.++ .=.+..+-...|
T Consensus 180 IVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~-~~g~l~le~g~~q---~~~v~~~~~~~~~ 255 (280)
T COG2890 180 IVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILK-PGGVLILEIGLTQ---GEAVKALFEDTGF 255 (280)
T ss_pred EEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcC-CCcEEEEEECCCc---HHHHHHHHHhcCC
Confidence 999999998641111100000 125788999999999998 8888888775433 112445555666
Q ss_pred cEEEEE
Q 044601 165 LTLQEV 170 (213)
Q Consensus 165 l~l~~~ 170 (213)
+.....
T Consensus 256 ~~~v~~ 261 (280)
T COG2890 256 FEIVET 261 (280)
T ss_pred ceEEEE
Confidence 443443
No 106
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=87.08 E-value=16 Score=32.28 Aligned_cols=98 Identities=19% Similarity=0.235 Sum_probs=59.1
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCE--E-EEeeeccccCCCcccc
Q 044601 14 SKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCL--V-FYGVDAMQMSQHFFLR 90 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~--V-~~gVDAt~L~~~~~l~ 90 (213)
++++||=||=|.=..+.++++ ++ +..++|.-.+.. .+. .+.+|+.. .++. + ....| +.. ..
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~-~g-~~~V~avDid~~-al~----~a~~n~~~---n~~~~~~~~~~~~---~~~---~~ 222 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALK-LG-AAKVVGIDIDPL-AVE----SARKNAEL---NQVSDRLQVKLIY---LEQ---PI 222 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHH-cC-CCeEEEEECCHH-HHH----HHHHHHHH---cCCCcceEEEecc---ccc---cc
Confidence 568999999988556666554 44 457888777643 222 24455442 2321 1 11111 111 12
Q ss_pred CCcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEe
Q 044601 91 THKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTH 145 (213)
Q Consensus 91 ~~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl 145 (213)
..+||.|+.|... .-+..++..+..+|+ ++|.+.++-
T Consensus 223 ~~~fDlVvan~~~-----------------~~l~~ll~~~~~~Lk-pgG~li~sg 259 (288)
T TIGR00406 223 EGKADVIVANILA-----------------EVIKELYPQFSRLVK-PGGWLILSG 259 (288)
T ss_pred CCCceEEEEecCH-----------------HHHHHHHHHHHHHcC-CCcEEEEEe
Confidence 4689999999631 113467788899998 999998863
No 107
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=86.99 E-value=9.1 Score=34.14 Aligned_cols=103 Identities=24% Similarity=0.282 Sum_probs=74.0
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEE-EEeeeccccCCCccccC
Q 044601 13 SSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLV-FYGVDAMQMSQHFFLRT 91 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V-~~gVDAt~L~~~~~l~~ 91 (213)
+.++|||=.|=|.=+.|.+||+..++.-.|+ +||-.++-.+ -|.+|+.+. ..+-.| +-.-|+++-. -.
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~--tyE~r~d~~k---~A~~Nl~~~-~l~d~v~~~~~Dv~~~~-----~~ 161 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVT--TYEIREDFAK---TARENLSEF-GLGDRVTLKLGDVREGI-----DE 161 (256)
T ss_pred CCCCEEEEcccCchHHHHHHHHhhCCCceEE--EEEecHHHHH---HHHHHHHHh-ccccceEEEeccccccc-----cc
Confidence 5689999999999999999999998655654 6776665555 588999886 222212 2224554432 13
Q ss_pred CcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEec
Q 044601 92 HKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHK 146 (213)
Q Consensus 92 ~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~ 146 (213)
..||.|+-+-|-.= .....++.+|+ ++|.+.+=+-
T Consensus 162 ~~vDav~LDmp~PW-------------------~~le~~~~~Lk-pgg~~~~y~P 196 (256)
T COG2519 162 EDVDAVFLDLPDPW-------------------NVLEHVSDALK-PGGVVVVYSP 196 (256)
T ss_pred cccCEEEEcCCChH-------------------HHHHHHHHHhC-CCcEEEEEcC
Confidence 48999999999765 56788999998 9988876654
No 108
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=86.82 E-value=17 Score=30.31 Aligned_cols=131 Identities=18% Similarity=0.141 Sum_probs=67.7
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCC
Q 044601 13 SSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTH 92 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~ 92 (213)
.+..+||=||=|.=.++..|++. +..|++.-.+ +++.. .+..++.........-..-.|+..+. .
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s--~~~i~---~a~~~~~~~~~~~~i~~~~~d~~~~~-------~ 118 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDIS--EQMVQ---MARNRAQGRDVAGNVEFEVNDLLSLC-------G 118 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECC--HHHHH---HHHHHHHhcCCCCceEEEECChhhCC-------C
Confidence 45789999988887788888764 3466665444 22222 13333322111011122334554432 5
Q ss_pred cccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCC-----------------------
Q 044601 93 KFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGD----------------------- 149 (213)
Q Consensus 93 ~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~----------------------- 149 (213)
.||.|+..+.-.-.. ..-+...+..+..+++ + .+.|+.....
T Consensus 119 ~fD~ii~~~~l~~~~------------~~~~~~~l~~i~~~~~-~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (219)
T TIGR02021 119 EFDIVVCMDVLIHYP------------ASDMAKALGHLASLTK-E--RVIFTFAPKTAWLAFLKMIGELFPGSSRATSAY 183 (219)
T ss_pred CcCEEEEhhHHHhCC------------HHHHHHHHHHHHHHhC-C--CEEEEECCCchHHHHHHHHHhhCcCcccccceE
Confidence 799999865432210 0112344555555554 3 3444443211
Q ss_pred CCCcccHHhHHHHhCcEEEEEeec
Q 044601 150 PYNKWELVKKAEKIGLTLQEVVPF 173 (213)
Q Consensus 150 py~~W~i~~lA~~~gl~l~~~~~F 173 (213)
++....++.+++.+||.++.....
T Consensus 184 ~~~~~~~~~~l~~~Gf~v~~~~~~ 207 (219)
T TIGR02021 184 LHPMTDLERALGELGWKIVREGLV 207 (219)
T ss_pred EecHHHHHHHHHHcCceeeeeecc
Confidence 123345667778888888777544
No 109
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=86.74 E-value=3.3 Score=37.25 Aligned_cols=109 Identities=19% Similarity=0.302 Sum_probs=67.7
Q ss_pred CeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCH-HHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCCcc
Q 044601 16 QRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQ-ETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTHKF 94 (213)
Q Consensus 16 ~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~-~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~~F 94 (213)
++||++|=||=+.++.++++.. -.++|+--.|.. =++.++|-....+... .--+.|+. =|+-+.-... ..+|
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~--dpRv~i~i-~Dg~~~v~~~---~~~f 150 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGAD--DPRVEIII-DDGVEFLRDC---EEKF 150 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccC--CCceEEEe-ccHHHHHHhC---CCcC
Confidence 6999999999999999999874 778998888842 3444554322111111 11223322 1333322221 2479
Q ss_pred cEEEEcCCcC-CCcccccchHHHHhhHHH-HHHHHHHHHhhcccCCCeEEEE
Q 044601 95 DRVIYNFPHV-GFIFRENSYCQIQLNKEL-VKGFLRNAKLLLKEENGEIHVT 144 (213)
Q Consensus 95 DrIiFNFPH~-G~~~~e~~~~~i~~n~~L-l~~Ff~Sa~~~L~~~~G~ihvT 144 (213)
|.||-+---. |. ...| =..||+.|+..|+ ++|-+.+-
T Consensus 151 DvIi~D~tdp~gp------------~~~Lft~eFy~~~~~~L~-~~Gi~v~q 189 (282)
T COG0421 151 DVIIVDSTDPVGP------------AEALFTEEFYEGCRRALK-EDGIFVAQ 189 (282)
T ss_pred CEEEEcCCCCCCc------------ccccCCHHHHHHHHHhcC-CCcEEEEe
Confidence 9999986443 32 1122 2489999999998 88876555
No 110
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=86.60 E-value=21 Score=32.02 Aligned_cols=132 Identities=17% Similarity=0.140 Sum_probs=75.6
Q ss_pred CCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCCcc
Q 044601 15 KQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTHKF 94 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~~F 94 (213)
..+||=+|=|.=.|++.||+. +..++|.-.+ .+..+ .+..|++...-..+.+ ..-|+.++.... ...|
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s--~~av~---~A~~n~~~~~l~~v~~-~~~D~~~~~~~~---~~~~ 241 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATP---GMQLTGIEIS--AEAIA---CAKQSAAELGLTNVQF-QALDSTQFATAQ---GEVP 241 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhc---CCEEEEEeCC--HHHHH---HHHHHHHHcCCCceEE-EEcCHHHHHHhc---CCCC
Confidence 578998887777788888873 3466655444 33333 3566665443222333 456776653211 2469
Q ss_pred cEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCCCCCcccHHhHHHHhCcEEEEEeecC
Q 044601 95 DRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGDPYNKWELVKKAEKIGLTLQEVVPFC 174 (213)
Q Consensus 95 DrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py~~W~i~~lA~~~gl~l~~~~~F~ 174 (213)
|.||.|=|..|.. ..++ ..+.. +. +.+-|+|+-...... =++..+ .||.+.+..+||
T Consensus 242 D~Vv~dPPr~G~~------------~~~~-~~l~~----~~-~~~ivyvsc~p~t~~--rd~~~l---~~y~~~~~~~~D 298 (315)
T PRK03522 242 DLVLVNPPRRGIG------------KELC-DYLSQ----MA-PRFILYSSCNAQTMA--KDLAHL---PGYRIERVQLFD 298 (315)
T ss_pred eEEEECCCCCCcc------------HHHH-HHHHH----cC-CCeEEEEECCcccch--hHHhhc---cCcEEEEEEEec
Confidence 9999998877632 1111 11111 33 555566654332211 234444 699999999997
Q ss_pred CCCCCCCcc
Q 044601 175 KQDYPGYDN 183 (213)
Q Consensus 175 ~~~yPgY~~ 183 (213)
-||.=.|
T Consensus 299 --mFP~T~H 305 (315)
T PRK03522 299 --MFPHTAH 305 (315)
T ss_pred --cCCCCCe
Confidence 5776444
No 111
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=86.45 E-value=1.9 Score=38.44 Aligned_cols=133 Identities=24% Similarity=0.243 Sum_probs=79.9
Q ss_pred HHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCCcccEEEEcCCcCCCc
Q 044601 28 FSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTHKFDRVIYNFPHVGFI 107 (213)
Q Consensus 28 FS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~~FDrIiFNFPH~G~~ 107 (213)
-+..||........|+|.=.. ..-+ .....|++.|--..+.+.. .|++++..... ...||+|+-+=|+.|.+
T Consensus 99 Kt~~la~~~~~~g~i~A~D~~-~~Rl----~~l~~~~~r~g~~~v~~~~-~D~~~~~~~~~--~~~fd~VlvDaPCSg~G 170 (283)
T PF01189_consen 99 KTTHLAELMGNKGEIVANDIS-PKRL----KRLKENLKRLGVFNVIVIN-ADARKLDPKKP--ESKFDRVLVDAPCSGLG 170 (283)
T ss_dssp HHHHHHHHTTTTSEEEEEESS-HHHH----HHHHHHHHHTT-SSEEEEE-SHHHHHHHHHH--TTTEEEEEEECSCCCGG
T ss_pred ceeeeeecccchhHHHHhccC-HHHH----HHHHHHHHhcCCceEEEEe-ecccccccccc--ccccchhhcCCCccchh
Confidence 344566666555677776544 2222 2234455544333334433 79998864432 34799999999999963
Q ss_pred ccc-c-------chHHHHhhHHHHHHHHHHHHhhc----ccCCCeEEEEeccCCCCC-cccHHh-HHHHhCcEEEE
Q 044601 108 FRE-N-------SYCQIQLNKELVKGFLRNAKLLL----KEENGEIHVTHKEGDPYN-KWELVK-KAEKIGLTLQE 169 (213)
Q Consensus 108 ~~e-~-------~~~~i~~n~~Ll~~Ff~Sa~~~L----~~~~G~ihvTl~~~~py~-~W~i~~-lA~~~gl~l~~ 169 (213)
... + +.+.+.....+=...+.+|.+++ + ++|.+.=+-|+-.|-. .-.|.. +.+...+.+..
T Consensus 171 ~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k-~gG~lvYsTCS~~~eENE~vV~~fl~~~~~~~l~~ 245 (283)
T PF01189_consen 171 TIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFK-PGGRLVYSTCSLSPEENEEVVEKFLKRHPDFELVP 245 (283)
T ss_dssp GTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBE-EEEEEEEEESHHHGGGTHHHHHHHHHHSTSEEEEC
T ss_pred hhhhccchhhcccccccchHHHHHHHHHHHHHHhhccccc-CCCeEEEEeccHHHHHHHHHHHHHHHhCCCcEEEe
Confidence 211 1 12345555566677889999999 9 9999888877655543 344554 34444666653
No 112
>PRK06940 short chain dehydrogenase; Provisional
Probab=86.37 E-value=11 Score=32.48 Aligned_cols=77 Identities=16% Similarity=0.189 Sum_probs=48.3
Q ss_pred CeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEE-EEeeeccccCCCccc-----
Q 044601 16 QRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLV-FYGVDAMQMSQHFFL----- 89 (213)
Q Consensus 16 ~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V-~~gVDAt~L~~~~~l----- 89 (213)
+.+|+.|= . .--+++++.+..+.+|++++.+. +. ..+..++|+..|.++ .+.+|.++......+
T Consensus 3 k~~lItGa-~-gIG~~la~~l~~G~~Vv~~~r~~-~~-------~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~ 72 (275)
T PRK06940 3 EVVVVIGA-G-GIGQAIARRVGAGKKVLLADYNE-EN-------LEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQ 72 (275)
T ss_pred CEEEEECC-C-hHHHHHHHHHhCCCEEEEEeCCH-HH-------HHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHH
Confidence 45677774 4 56677777776678899987753 22 223345566667654 577898876543211
Q ss_pred cCCcccEEEEcCC
Q 044601 90 RTHKFDRVIYNFP 102 (213)
Q Consensus 90 ~~~~FDrIiFNFP 102 (213)
...+.|.||.|--
T Consensus 73 ~~g~id~li~nAG 85 (275)
T PRK06940 73 TLGPVTGLVHTAG 85 (275)
T ss_pred hcCCCCEEEECCC
Confidence 1246899998853
No 113
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=85.98 E-value=7.4 Score=32.07 Aligned_cols=101 Identities=18% Similarity=0.219 Sum_probs=62.5
Q ss_pred CCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCCcc
Q 044601 15 KQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTHKF 94 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~~F 94 (213)
..+||=||=|.=+++..|++.. ....++++-.+ .+..+. +..++. . .+.+ ...|++.+. +....|
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~--~~~~~~---~~~~~~---~-~~~~-~~~d~~~~~----~~~~~f 99 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRF-PQAEFIALDIS--AGMLAQ---AKTKLS---E-NVQF-ICGDAEKLP----LEDSSF 99 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhC-CCCcEEEEeCh--HHHHHH---HHHhcC---C-CCeE-EecchhhCC----CCCCce
Confidence 4789999988888888998875 34456665554 222221 111111 1 2333 335666543 235679
Q ss_pred cEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEe
Q 044601 95 DRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTH 145 (213)
Q Consensus 95 DrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl 145 (213)
|.|+.++..--.. + ...++..+..+|+ ++|.+.++.
T Consensus 100 D~vi~~~~l~~~~-----------~---~~~~l~~~~~~L~-~~G~l~~~~ 135 (240)
T TIGR02072 100 DLIVSNLALQWCD-----------D---LSQALSELARVLK-PGGLLAFST 135 (240)
T ss_pred eEEEEhhhhhhcc-----------C---HHHHHHHHHHHcC-CCcEEEEEe
Confidence 9999886532210 0 2358889999998 999988875
No 114
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=85.76 E-value=14 Score=33.60 Aligned_cols=130 Identities=20% Similarity=0.205 Sum_probs=77.6
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHH-hCCCEEEEeeeccccCCCccccCC
Q 044601 14 SKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELE-ERGCLVFYGVDAMQMSQHFFLRTH 92 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~-~~g~~V~~gVDAt~L~~~~~l~~~ 92 (213)
++.+||=||=|+=-++..|++. +.+| |..|.-++..+. +..+.+..- ..++.+ ..-|+.++. ....
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~---g~~V--~GID~s~~~i~~---Ar~~~~~~~~~~~i~~-~~~dae~l~----~~~~ 197 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM---GATV--TGVDAVDKNVKI---ARLHADMDPVTSTIEY-LCTTAEKLA----DEGR 197 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc---CCEE--EEEeCCHHHHHH---HHHHHHhcCcccceeE-EecCHHHhh----hccC
Confidence 4569999998887788888863 3455 455644444332 332221110 012333 335666653 2246
Q ss_pred cccEEEEcC--CcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCC------------------C--
Q 044601 93 KFDRVIYNF--PHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGD------------------P-- 150 (213)
Q Consensus 93 ~FDrIiFNF--PH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~------------------p-- 150 (213)
+||.|+... -|+.. ...|++.+..+|+ |+|.+.|+--+.. |
T Consensus 198 ~FD~Vi~~~vLeHv~d----------------~~~~L~~l~r~Lk-PGG~liist~nr~~~~~~~~i~~~eyi~~~lp~g 260 (322)
T PLN02396 198 KFDAVLSLEVIEHVAN----------------PAEFCKSLSALTI-PNGATVLSTINRTMRAYASTIVGAEYILRWLPKG 260 (322)
T ss_pred CCCEEEEhhHHHhcCC----------------HHHHHHHHHHHcC-CCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCC
Confidence 899999754 33332 1368888999998 9999988742211 1
Q ss_pred CCcc-------cHHhHHHHhCcEEEEEeec
Q 044601 151 YNKW-------ELVKKAEKIGLTLQEVVPF 173 (213)
Q Consensus 151 y~~W-------~i~~lA~~~gl~l~~~~~F 173 (213)
...| .+..+.+++|+.+.+..-+
T Consensus 261 th~~~~f~tp~eL~~lL~~aGf~i~~~~G~ 290 (322)
T PLN02396 261 THQWSSFVTPEELSMILQRASVDVKEMAGF 290 (322)
T ss_pred CcCccCCCCHHHHHHHHHHcCCeEEEEeee
Confidence 1224 3566778889988777443
No 115
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=85.67 E-value=0.93 Score=40.83 Aligned_cols=154 Identities=20% Similarity=0.240 Sum_probs=70.2
Q ss_pred cccccCCCCCCeEEEEecCChhHHHH--HHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHH--HHHhCCCEEEEeeecc
Q 044601 6 EKWSNHYSSKQRILLVGEGDFSFSLC--LAREFGFAHNMVATCLDTQETIANKYSNAVDNVR--ELEERGCLVFYGVDAM 81 (213)
Q Consensus 6 ~k~~~~y~~~~~ILlVGEGnFSFS~a--La~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~--~L~~~g~~V~~gVDAt 81 (213)
-+|+..++++++||=+ ||++-+ ++-+.+.+.. +|+.|.-...++ .+.+|+. .|....++. ..-|+-
T Consensus 115 R~~v~~~~~gkrvLnl----FsYTGgfsv~Aa~gGA~~--v~~VD~S~~al~---~a~~N~~lNg~~~~~~~~-~~~Dvf 184 (286)
T PF10672_consen 115 RKWVRKYAKGKRVLNL----FSYTGGFSVAAAAGGAKE--VVSVDSSKRALE---WAKENAALNGLDLDRHRF-IQGDVF 184 (286)
T ss_dssp HHHHHHHCTTCEEEEE----T-TTTHHHHHHHHTTESE--EEEEES-HHHHH---HHHHHHHHTT-CCTCEEE-EES-HH
T ss_pred HHHHHHHcCCCceEEe----cCCCCHHHHHHHHCCCCE--EEEEeCCHHHHH---HHHHHHHHcCCCccceEE-EecCHH
Confidence 3688889999999965 665433 3223333434 456775444333 2555543 222122222 244665
Q ss_pred ccCCCccccCCcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCCCCCcccHHhHHH
Q 044601 82 QMSQHFFLRTHKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGDPYNKWELVKKAE 161 (213)
Q Consensus 82 ~L~~~~~l~~~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py~~W~i~~lA~ 161 (213)
+.-... -+..+||.||.+=|-... ++.+ ..+..+ ..+..|.++|+ ++|.+..+.|... .+.=.+.++.+
T Consensus 185 ~~l~~~-~~~~~fD~IIlDPPsF~k-~~~~---~~~~y~----~L~~~a~~ll~-~gG~l~~~scs~~-i~~~~l~~~~~ 253 (286)
T PF10672_consen 185 KFLKRL-KKGGRFDLIILDPPSFAK-SKFD---LERDYK----KLLRRAMKLLK-PGGLLLTCSCSHH-ISPDFLLEAVA 253 (286)
T ss_dssp HHHHHH-HHTT-EEEEEE--SSEES-STCE---HHHHHH----HHHHHHHHTEE-EEEEEEEEE--TT-S-HHHHHHHHH
T ss_pred HHHHHH-hcCCCCCEEEECCCCCCC-CHHH---HHHHHH----HHHHHHHHhcC-CCCEEEEEcCCcc-cCHHHHHHHHH
Confidence 522111 135689999999997753 3222 112223 34567889998 9999887777543 22111233223
Q ss_pred Hh--CcEEEEEeecCCCCCCCC
Q 044601 162 KI--GLTLQEVVPFCKQDYPGY 181 (213)
Q Consensus 162 ~~--gl~l~~~~~F~~~~yPgY 181 (213)
++ .+.+++. --.|.+||.-
T Consensus 254 ~~a~~~~~~~~-~~~p~df~~~ 274 (286)
T PF10672_consen 254 EAAREVEFIER-LGQPPDFPDI 274 (286)
T ss_dssp HHHHHCEEEEE-EE--------
T ss_pred HhCccceEeee-eccccccccc
Confidence 33 3444433 2256778763
No 116
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=84.15 E-value=7.3 Score=35.95 Aligned_cols=132 Identities=17% Similarity=0.146 Sum_probs=72.9
Q ss_pred CCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCCcc
Q 044601 15 KQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTHKF 94 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~~F 94 (213)
..+||=+|=|.=+||++||.. +..++|.-.+. +.+. .+..|++.+.-..+. ...-|+.+..... ...|
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~-~av~----~a~~N~~~~~~~~~~-~~~~d~~~~~~~~---~~~~ 301 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIES-EAIA----CAQQSAQMLGLDNLS-FAALDSAKFATAQ---MSAP 301 (374)
T ss_pred CCEEEEccCCccHHHHHHhhc---CCeEEEEECCH-HHHH----HHHHHHHHcCCCcEE-EEECCHHHHHHhc---CCCC
Confidence 456765554444556666632 34666655553 2222 356666554322233 4556776543221 2459
Q ss_pred cEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCCCCCcccHHhHHHHhCcEEEEEeecC
Q 044601 95 DRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGDPYNKWELVKKAEKIGLTLQEVVPFC 174 (213)
Q Consensus 95 DrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py~~W~i~~lA~~~gl~l~~~~~F~ 174 (213)
|.||.|=|-.|.. +.++.... -++ |++-|+|...... --=++..| .||.+....+||
T Consensus 302 D~vi~DPPr~G~~------------~~~l~~l~-----~~~-p~~ivyvsc~p~T--laRDl~~L---~gy~l~~~~~~D 358 (374)
T TIGR02085 302 ELVLVNPPRRGIG------------KELCDYLS-----QMA-PKFILYSSCNAQT--MAKDIAEL---SGYQIERVQLFD 358 (374)
T ss_pred CEEEECCCCCCCc------------HHHHHHHH-----hcC-CCeEEEEEeCHHH--HHHHHHHh---cCceEEEEEEec
Confidence 9999999976531 22222221 155 7777888764322 12344445 689999999997
Q ss_pred CCCCCCCcc
Q 044601 175 KQDYPGYDN 183 (213)
Q Consensus 175 ~~~yPgY~~ 183 (213)
-||.=.|
T Consensus 359 --mFPqT~H 365 (374)
T TIGR02085 359 --MFPHTSH 365 (374)
T ss_pred --cCCCCCc
Confidence 6775443
No 117
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=83.86 E-value=5.4 Score=30.70 Aligned_cols=120 Identities=25% Similarity=0.323 Sum_probs=76.8
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccC
Q 044601 12 YSSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRT 91 (213)
Q Consensus 12 y~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~ 91 (213)
..+..+||=||=|.=.++..|++. +..++++-.. +.+.++ -..+.-..+++. .....
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~--~~~~~~--------------~~~~~~~~~~~~----~~~~~ 76 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDIS--PQMIEK--------------RNVVFDNFDAQD----PPFPD 76 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESS--HHHHHH--------------TTSEEEEEECHT----HHCHS
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECC--HHHHhh--------------hhhhhhhhhhhh----hhccc
Confidence 466899999999988999999654 3466665544 333332 111111112221 11235
Q ss_pred CcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCC---------------------C
Q 044601 92 HKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGD---------------------P 150 (213)
Q Consensus 92 ~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~---------------------p 150 (213)
..||.|+.+. +-. .+. + ...++.....+|+ |+|.+.|+.-... .
T Consensus 77 ~~fD~i~~~~--~l~--------~~~-d---~~~~l~~l~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (161)
T PF13489_consen 77 GSFDLIICND--VLE--------HLP-D---PEEFLKELSRLLK-PGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHF 141 (161)
T ss_dssp SSEEEEEEES--SGG--------GSS-H---HHHHHHHHHHCEE-EEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEE
T ss_pred cchhhHhhHH--HHh--------hcc-c---HHHHHHHHHHhcC-CCCEEEEEEcCCcchhhhHHHhcCCcCccCceecc
Confidence 7899999982 221 111 1 5588888999998 9999998876531 2
Q ss_pred CCcccHHhHHHHhCcEEEE
Q 044601 151 YNKWELVKKAEKIGLTLQE 169 (213)
Q Consensus 151 y~~W~i~~lA~~~gl~l~~ 169 (213)
++.+.+..+++++||.+++
T Consensus 142 ~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 142 FSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp BBHHHHHHHHHHTTEEEEE
T ss_pred CCHHHHHHHHHHCCCEEEE
Confidence 4457788888999988765
No 118
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=83.71 E-value=9.6 Score=35.94 Aligned_cols=160 Identities=19% Similarity=0.209 Sum_probs=83.9
Q ss_pred cccccCCCCCCeEEEEecCChhHHHHH--HHHhCCCCeEEEeccC-CHHHHHhhcchHHHHHHHHHhCC-CE-EEEeeec
Q 044601 6 EKWSNHYSSKQRILLVGEGDFSFSLCL--AREFGFAHNMVATCLD-TQETIANKYSNAVDNVRELEERG-CL-VFYGVDA 80 (213)
Q Consensus 6 ~k~~~~y~~~~~ILlVGEGnFSFS~aL--a~~~~~~~~l~ATs~d-s~~~l~~kY~~a~~ni~~L~~~g-~~-V~~gVDA 80 (213)
-+|+..+.+++++|=+ ||++=+. +-+.+.+..+ |+-| |...|.- +++|.+ |.... .+ -+..-||
T Consensus 209 R~~l~~~~~GkrvLNl----FsYTGgfSv~Aa~gGA~~v--t~VD~S~~al~~----a~~N~~-LNg~~~~~~~~i~~Dv 277 (393)
T COG1092 209 RRALGELAAGKRVLNL----FSYTGGFSVHAALGGASEV--TSVDLSKRALEW----ARENAE-LNGLDGDRHRFIVGDV 277 (393)
T ss_pred HHHHhhhccCCeEEEe----cccCcHHHHHHHhcCCCce--EEEeccHHHHHH----HHHHHH-hcCCCccceeeehhhH
Confidence 3577778888999865 5554333 3333323343 3445 4333332 445542 22211 11 1233344
Q ss_pred cccCCCccccCCcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCCCCCcc----cH
Q 044601 81 MQMSQHFFLRTHKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGDPYNKW----EL 156 (213)
Q Consensus 81 t~L~~~~~l~~~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py~~W----~i 156 (213)
=+.-+...-++.+||.||.+=|-.+.. +...-+-.+.+..|+ .-|.++|+ |+|.+.+..|... ...= .|
T Consensus 278 f~~l~~~~~~g~~fDlIilDPPsF~r~-k~~~~~~~rdy~~l~----~~~~~iL~-pgG~l~~~s~~~~-~~~~~f~~~i 350 (393)
T COG1092 278 FKWLRKAERRGEKFDLIILDPPSFARS-KKQEFSAQRDYKDLN----DLALRLLA-PGGTLVTSSCSRH-FSSDLFLEII 350 (393)
T ss_pred HHHHHHHHhcCCcccEEEECCcccccC-cccchhHHHHHHHHH----HHHHHHcC-CCCEEEEEecCCc-cCHHHHHHHH
Confidence 443333333457999999999988853 222122222333333 34788998 9998888887653 3322 22
Q ss_pred HhHHHHhCcEEEEE-eecCCCCCCCCcc
Q 044601 157 VKKAEKIGLTLQEV-VPFCKQDYPGYDN 183 (213)
Q Consensus 157 ~~lA~~~gl~l~~~-~~F~~~~yPgY~~ 183 (213)
...|...+...... ..-.+.++|...+
T Consensus 351 ~~a~~~~~~~~~~~~~~~~~~D~p~~~~ 378 (393)
T COG1092 351 ARAAAAAGRRAQEIEGEGQPPDHPRNAQ 378 (393)
T ss_pred HHHHHhcCCcEEEeeccCCCCCcccccc
Confidence 33445555544444 4555667765543
No 119
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=83.68 E-value=15 Score=34.90 Aligned_cols=130 Identities=24% Similarity=0.353 Sum_probs=78.5
Q ss_pred CCeEEEEecCChhHHHHHHHH--hCCCCeEEEeccCCHH-HHHhhcchHHHHHHHHHhC---CCEE-EEeeeccccCCCc
Q 044601 15 KQRILLVGEGDFSFSLCLARE--FGFAHNMVATCLDTQE-TIANKYSNAVDNVRELEER---GCLV-FYGVDAMQMSQHF 87 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aLa~~--~~~~~~l~ATs~ds~~-~l~~kY~~a~~ni~~L~~~---g~~V-~~gVDAt~L~~~~ 87 (213)
-.++|++|-|| -+||-+- +..-.+|+---+|.+- |+.++ ...+..+.+. .-+| ++.=||-+--+.
T Consensus 290 a~~vLvlGGGD---GLAlRellkyP~~~qI~lVdLDP~miela~~----~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~- 361 (508)
T COG4262 290 ARSVLVLGGGD---GLALRELLKYPQVEQITLVDLDPRMIELASH----ATVLRALNQGSFSDPRVTVVNDDAFQWLRT- 361 (508)
T ss_pred cceEEEEcCCc---hHHHHHHHhCCCcceEEEEecCHHHHHHhhh----hhHhhhhccCCccCCeeEEEeccHHHHHHh-
Confidence 47899999988 3444332 2334578888888542 12111 1223333321 1222 334455432222
Q ss_pred cccCCcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCCCC----CcccHHhHHHHh
Q 044601 88 FLRTHKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGDPY----NKWELVKKAEKI 163 (213)
Q Consensus 88 ~l~~~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py----~~W~i~~lA~~~ 163 (213)
...+||.||-++|.....+ .-|--=..|+.+++.-|+ ++|.+.|-- |.|| .-|-|..--+++
T Consensus 362 --a~~~fD~vIVDl~DP~tps---------~~rlYS~eFY~ll~~~l~-e~Gl~VvQa--gs~y~tp~vfw~i~aTik~A 427 (508)
T COG4262 362 --AADMFDVVIVDLPDPSTPS---------IGRLYSVEFYRLLSRHLA-ETGLMVVQA--GSPYFTPRVFWRIDATIKSA 427 (508)
T ss_pred --hcccccEEEEeCCCCCCcc---------hhhhhhHHHHHHHHHhcC-cCceEEEec--CCCccCCceeeeehhHHHhC
Confidence 2468999999999987532 122223479999999998 888876654 4455 459999988888
Q ss_pred CcE
Q 044601 164 GLT 166 (213)
Q Consensus 164 gl~ 166 (213)
|+.
T Consensus 428 G~~ 430 (508)
T COG4262 428 GYR 430 (508)
T ss_pred cce
Confidence 864
No 120
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=83.58 E-value=14 Score=33.65 Aligned_cols=130 Identities=23% Similarity=0.280 Sum_probs=75.8
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHH-HHhCCCEEEEeeeccccCCCccccCC
Q 044601 14 SKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRE-LEERGCLVFYGVDAMQMSQHFFLRTH 92 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~-L~~~g~~V~~gVDAt~L~~~~~l~~~ 92 (213)
++++||=||=|+=-++..++.. + +..+ +.+|.-..+.... ..++. +...+...+...|+..|.. ..
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~-g-~~~v--~GiDpS~~ml~q~----~~~~~~~~~~~~v~~~~~~ie~lp~-----~~ 187 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGH-G-AKSL--VGIDPTVLFLCQF----EAVRKLLDNDKRAILEPLGIEQLHE-----LY 187 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHc-C-CCEE--EEEcCCHHHHHHH----HHHHHHhccCCCeEEEECCHHHCCC-----CC
Confidence 3689999999998888777755 3 3333 6677433333322 11212 1212222233455655532 23
Q ss_pred cccEEEEcC--CcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEe--ccCC------C---C----Cccc
Q 044601 93 KFDRVIYNF--PHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTH--KEGD------P---Y----NKWE 155 (213)
Q Consensus 93 ~FDrIiFNF--PH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl--~~~~------p---y----~~W~ 155 (213)
.||.|+.+. -|... ...+++.++.+|+ ++|++.|+- .++. | | +.|.
T Consensus 188 ~FD~V~s~gvL~H~~d----------------p~~~L~el~r~Lk-pGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~f 250 (314)
T TIGR00452 188 AFDTVFSMGVLYHRKS----------------PLEHLKQLKHQLV-IKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYF 250 (314)
T ss_pred CcCEEEEcchhhccCC----------------HHHHHHHHHHhcC-CCCEEEEEEEEecCccccccCchHHHHhcccccc
Confidence 699998763 44321 2367899999998 999988762 2221 1 1 2232
Q ss_pred ------HHhHHHHhCcEEEEEeec
Q 044601 156 ------LVKKAEKIGLTLQEVVPF 173 (213)
Q Consensus 156 ------i~~lA~~~gl~l~~~~~F 173 (213)
++...+++||..++...-
T Consensus 251 lpS~~~L~~~L~~aGF~~V~i~~~ 274 (314)
T TIGR00452 251 IPSVSALKNWLEKVGFENFRILDV 274 (314)
T ss_pred CCCHHHHHHHHHHCCCeEEEEEec
Confidence 235677889999887653
No 121
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=82.99 E-value=3.7 Score=37.96 Aligned_cols=101 Identities=25% Similarity=0.320 Sum_probs=62.3
Q ss_pred CCCeEE--EEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccC
Q 044601 14 SKQRIL--LVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRT 91 (213)
Q Consensus 14 ~~~~IL--lVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~ 91 (213)
.+.+|| .-|=|=||+..|-. +.+. |+|.-+....- .-.++|+..=+-.+....+.-||..+-...
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~---g~~~-V~A~diNP~A~-----~~L~eNi~LN~v~~~v~~i~gD~rev~~~~---- 254 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKK---GRPK-VYAIDINPDAV-----EYLKENIRLNKVEGRVEPILGDAREVAPEL---- 254 (341)
T ss_pred CCCEEEEccCCcccchhhhhhc---CCce-EEEEecCHHHH-----HHHHHHHHhcCccceeeEEeccHHHhhhcc----
Confidence 344444 45777777766654 3233 99988774321 112344432222232335555776654332
Q ss_pred CcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEec
Q 044601 92 HKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHK 146 (213)
Q Consensus 92 ~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~ 146 (213)
..|||||.|.|+... .|..-|...++ ++|.||.=..
T Consensus 255 ~~aDrIim~~p~~a~------------------~fl~~A~~~~k-~~g~iHyy~~ 290 (341)
T COG2520 255 GVADRIIMGLPKSAH------------------EFLPLALELLK-DGGIIHYYEF 290 (341)
T ss_pred ccCCEEEeCCCCcch------------------hhHHHHHHHhh-cCcEEEEEec
Confidence 779999999999653 68888999998 7999888764
No 122
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=82.58 E-value=16 Score=34.43 Aligned_cols=105 Identities=19% Similarity=0.177 Sum_probs=64.8
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCCc
Q 044601 14 SKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTHK 93 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~~ 93 (213)
+..+||=||=|.=.++..|++.. ..|+|. |-..++.++ + .+.............|+.... .++....
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~---~~v~gi--D~s~~~l~~---a---~~~~~~~~~i~~~~~d~~~~~--~~~~~~~ 103 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKA---GQVIAL--DFIESVIKK---N---ESINGHYKNVKFMCADVTSPD--LNISDGS 103 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhC---CEEEEE--eCCHHHHHH---H---HHHhccCCceEEEEecccccc--cCCCCCC
Confidence 46799999999989999999763 356544 532333321 1 111111122234455665432 2233578
Q ss_pred ccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEE
Q 044601 94 FDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVT 144 (213)
Q Consensus 94 FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvT 144 (213)
||.|+-+++..- ....-+..+++.+..+|+ ++|.+.+.
T Consensus 104 fD~I~~~~~l~~------------l~~~~~~~~l~~~~r~Lk-~gG~l~~~ 141 (475)
T PLN02336 104 VDLIFSNWLLMY------------LSDKEVENLAERMVKWLK-VGGYIFFR 141 (475)
T ss_pred EEEEehhhhHHh------------CCHHHHHHHHHHHHHhcC-CCeEEEEE
Confidence 999999987332 122345688899999998 99998775
No 123
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=82.39 E-value=4.7 Score=34.76 Aligned_cols=110 Identities=14% Similarity=0.051 Sum_probs=63.9
Q ss_pred cCCCCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhC-CCEEEEeeeccccCCCcc
Q 044601 10 NHYSSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEER-GCLVFYGVDAMQMSQHFF 88 (213)
Q Consensus 10 ~~y~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~-g~~V~~gVDAt~L~~~~~ 88 (213)
....+.++||=+|=|-=.=+++|++..+.+..|++.-.|. +..+ -+.+|++...-. .++++ .-||.+.-....
T Consensus 64 ~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~--~~~~---~A~~n~~~~gl~~~i~~~-~gda~~~L~~l~ 137 (234)
T PLN02781 64 VKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDK--EAYE---VGLEFIKKAGVDHKINFI-QSDALSALDQLL 137 (234)
T ss_pred HHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCH--HHHH---HHHHHHHHcCCCCcEEEE-EccHHHHHHHHH
Confidence 3456689999999764343566777665455666655553 2222 366676554321 23444 347765321110
Q ss_pred c--cCCcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEE
Q 044601 89 L--RTHKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHV 143 (213)
Q Consensus 89 l--~~~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihv 143 (213)
- ....||.|..+-+. .-...+|.-+..+|+ ++|.|.+
T Consensus 138 ~~~~~~~fD~VfiDa~k-----------------~~y~~~~~~~~~ll~-~GG~ii~ 176 (234)
T PLN02781 138 NNDPKPEFDFAFVDADK-----------------PNYVHFHEQLLKLVK-VGGIIAF 176 (234)
T ss_pred hCCCCCCCCEEEECCCH-----------------HHHHHHHHHHHHhcC-CCeEEEE
Confidence 0 13579999887442 112256788889998 9998765
No 124
>PRK13699 putative methylase; Provisional
Probab=82.13 E-value=6 Score=34.13 Aligned_cols=93 Identities=14% Similarity=0.239 Sum_probs=55.8
Q ss_pred EEEEeeeccccCCCccccCCcccEEEEcCCcC-CCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCCCC
Q 044601 73 LVFYGVDAMQMSQHFFLRTHKFDRVIYNFPHV-GFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGDPY 151 (213)
Q Consensus 73 ~V~~gVDAt~L~~~~~l~~~~FDrIiFNFPH~-G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py 151 (213)
++++| ||..+-.. +...++|.||..=|=- |.+...+..-......+.+..+|..+..+|+ ++|.+.+-
T Consensus 3 ~l~~g-D~le~l~~--lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLK-pgg~l~if------- 71 (227)
T PRK13699 3 RFILG-NCIDVMAR--FPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLK-KDALMVSF------- 71 (227)
T ss_pred eEEec-hHHHHHHh--CCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcC-CCCEEEEE-------
Confidence 34444 77654332 3478899999998874 3211100000001223667889999999998 87766542
Q ss_pred Cccc----HHhHHHHhCcEEEEEeecCCC
Q 044601 152 NKWE----LVKKAEKIGLTLQEVVPFCKQ 176 (213)
Q Consensus 152 ~~W~----i~~lA~~~gl~l~~~~~F~~~ 176 (213)
..|+ +.....+.|+.+......++.
T Consensus 72 ~~~~~~~~~~~al~~~GF~l~~~IiW~K~ 100 (227)
T PRK13699 72 YGWNRVDRFMAAWKNAGFSVVGHLVFTKN 100 (227)
T ss_pred eccccHHHHHHHHHHCCCEEeeEEEEECC
Confidence 1232 234557889999888877753
No 125
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=82.07 E-value=27 Score=30.14 Aligned_cols=120 Identities=19% Similarity=0.175 Sum_probs=78.0
Q ss_pred EEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCCcccEE
Q 044601 18 ILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTHKFDRV 97 (213)
Q Consensus 18 ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~~FDrI 97 (213)
+|=+|=|.===|..|++..+.....+||=...+. +...++..+.+++. ..+=-|+|... ++.++.|.+
T Consensus 47 ~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A--------~~~Tl~TA~~n~~~--~~~V~tdl~~~--l~~~~VDvL 114 (209)
T KOG3191|consen 47 CLEIGCGSGVVSTFLASVIGPQALYLATDINPEA--------LEATLETARCNRVH--IDVVRTDLLSG--LRNESVDVL 114 (209)
T ss_pred EEEecCCcchHHHHHHHhcCCCceEEEecCCHHH--------HHHHHHHHHhcCCc--cceeehhHHhh--hccCCccEE
Confidence 4455666555667777777666666676555321 23467777777765 33334555433 345889999
Q ss_pred EEcCCcCCCcccccchHHHHh-------hHHHHHHHHHHHHhhcccCCCeEEEE-eccCCC
Q 044601 98 IYNFPHVGFIFRENSYCQIQL-------NKELVKGFLRNAKLLLKEENGEIHVT-HKEGDP 150 (213)
Q Consensus 98 iFNFPH~G~~~~e~~~~~i~~-------n~~Ll~~Ff~Sa~~~L~~~~G~ihvT-l~~~~p 150 (213)
|||=|-+...-.+..+++|.. =|..+..|+.-..++|+ |.|-.++- +....|
T Consensus 115 vfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLS-p~Gv~Ylv~~~~N~p 174 (209)
T KOG3191|consen 115 VFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILS-PRGVFYLVALRANKP 174 (209)
T ss_pred EECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcC-cCceEEeeehhhcCH
Confidence 999999986433333444432 47888999999999999 99987654 444444
No 126
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=81.83 E-value=16 Score=32.39 Aligned_cols=96 Identities=13% Similarity=0.194 Sum_probs=54.2
Q ss_pred CCCeEEEEecCChhHH-HHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCC
Q 044601 14 SKQRILLVGEGDFSFS-LCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTH 92 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS-~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~ 92 (213)
++++||+.|=|-.... ..||++.| ...|++|... .+.++.++++|+......+-.++.+... ...
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G-~~~Vi~~~~~------------~~~~~~a~~lGa~~vi~~~~~~~~~~~~-~~g 234 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLG-AAEIVCADVS------------PRSLSLAREMGADKLVNPQNDDLDHYKA-EKG 234 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEeCC------------HHHHHHHHHcCCcEEecCCcccHHHHhc-cCC
Confidence 5789999998876544 34577765 4467777544 2345667778876543322112221111 123
Q ss_pred cccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEE
Q 044601 93 KFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVT 144 (213)
Q Consensus 93 ~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvT 144 (213)
.+|.| |+. +|.. .-+..+-++|+ ++|.+.+.
T Consensus 235 ~~D~v-id~--~G~~-----------------~~~~~~~~~l~-~~G~iv~~ 265 (343)
T PRK09880 235 YFDVS-FEV--SGHP-----------------SSINTCLEVTR-AKGVMVQV 265 (343)
T ss_pred CCCEE-EEC--CCCH-----------------HHHHHHHHHhh-cCCEEEEE
Confidence 47755 454 4531 23445667787 89986654
No 127
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=81.82 E-value=20 Score=30.34 Aligned_cols=112 Identities=18% Similarity=0.166 Sum_probs=63.4
Q ss_pred ccCCCCCCeEEEEecCChhHHHH-HHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCc
Q 044601 9 SNHYSSKQRILLVGEGDFSFSLC-LAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHF 87 (213)
Q Consensus 9 ~~~y~~~~~ILlVGEGnFSFS~a-La~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~ 87 (213)
+.....+.+||=+|=|.=+|++. |++. +..|++- |...+..+ .+..|++.+.-..+.+ +.-|+.+.-..
T Consensus 48 l~~~~~~~~vLDl~~GsG~l~l~~lsr~---a~~V~~v--E~~~~a~~---~a~~Nl~~~~~~~v~~-~~~D~~~~l~~- 117 (199)
T PRK10909 48 LAPVIVDARCLDCFAGSGALGLEALSRY---AAGATLL--EMDRAVAQ---QLIKNLATLKAGNARV-VNTNALSFLAQ- 117 (199)
T ss_pred HhhhcCCCEEEEcCCCccHHHHHHHHcC---CCEEEEE--ECCHHHHH---HHHHHHHHhCCCcEEE-EEchHHHHHhh-
Confidence 33334567898886665556653 4432 3455554 43333333 3567777664334554 34566542211
Q ss_pred cccCCcccEEEEcCC-cCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEecc
Q 044601 88 FLRTHKFDRVIYNFP-HVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKE 147 (213)
Q Consensus 88 ~l~~~~FDrIiFNFP-H~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~ 147 (213)
....||.|++|=| +.| ....++..... ..+|. +++-|+|.+..
T Consensus 118 --~~~~fDlV~~DPPy~~g------------~~~~~l~~l~~--~~~l~-~~~iv~ve~~~ 161 (199)
T PRK10909 118 --PGTPHNVVFVDPPFRKG------------LLEETINLLED--NGWLA-DEALIYVESEV 161 (199)
T ss_pred --cCCCceEEEECCCCCCC------------hHHHHHHHHHH--CCCcC-CCcEEEEEecC
Confidence 1346999999999 444 22334443322 46776 89989988754
No 128
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=81.42 E-value=11 Score=33.45 Aligned_cols=100 Identities=16% Similarity=0.279 Sum_probs=55.3
Q ss_pred CCCCCeEEEEecCChhHHH-HHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCC-ccc
Q 044601 12 YSSKQRILLVGEGDFSFSL-CLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQH-FFL 89 (213)
Q Consensus 12 y~~~~~ILlVGEGnFSFS~-aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~-~~l 89 (213)
-.++++||+.|.|...-.. .+|+..| ...|++++-.. +.++.+++.|+....+.+.....+. ..+
T Consensus 158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G-~~~v~~~~~~~------------~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~ 224 (347)
T PRK10309 158 GCEGKNVIIIGAGTIGLLAIQCAVALG-AKSVTAIDINS------------EKLALAKSLGAMQTFNSREMSAPQIQSVL 224 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCH------------HHHHHHHHcCCceEecCcccCHHHHHHHh
Confidence 3568999999998876443 4567765 33466664321 2244566778754433322111110 011
Q ss_pred cCCcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEE
Q 044601 90 RTHKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVT 144 (213)
Q Consensus 90 ~~~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvT 144 (213)
....+|.+||+ .+|.. ..+..+..+|+ ++|.|.+-
T Consensus 225 ~~~~~d~~v~d--~~G~~-----------------~~~~~~~~~l~-~~G~iv~~ 259 (347)
T PRK10309 225 RELRFDQLILE--TAGVP-----------------QTVELAIEIAG-PRAQLALV 259 (347)
T ss_pred cCCCCCeEEEE--CCCCH-----------------HHHHHHHHHhh-cCCEEEEE
Confidence 23468877777 34431 23444667787 89987643
No 129
>PRK07402 precorrin-6B methylase; Provisional
Probab=81.35 E-value=28 Score=28.52 Aligned_cols=106 Identities=18% Similarity=0.105 Sum_probs=65.5
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccC
Q 044601 12 YSSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRT 91 (213)
Q Consensus 12 y~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~ 91 (213)
..++++||=+|-|.=+++..+++.. .+..|+|.-.+ .++.+ .+.+|++.+.-..+++ +.-||...-.. + .
T Consensus 38 ~~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s--~~~~~---~a~~n~~~~~~~~v~~-~~~d~~~~~~~--~-~ 107 (196)
T PRK07402 38 LEPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERD--EEVVN---LIRRNCDRFGVKNVEV-IEGSAPECLAQ--L-A 107 (196)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCC--HHHHH---HHHHHHHHhCCCCeEE-EECchHHHHhh--C-C
Confidence 3467899999999888888888764 34577776555 33333 2567776654334444 34565432111 1 1
Q ss_pred CcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEec
Q 044601 92 HKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHK 146 (213)
Q Consensus 92 ~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~ 146 (213)
..+|+|+... .. . +..+++.+..+|+ ++|.+.+...
T Consensus 108 ~~~d~v~~~~----~~-------~-------~~~~l~~~~~~Lk-pgG~li~~~~ 143 (196)
T PRK07402 108 PAPDRVCIEG----GR-------P-------IKEILQAVWQYLK-PGGRLVATAS 143 (196)
T ss_pred CCCCEEEEEC----Cc-------C-------HHHHHHHHHHhcC-CCeEEEEEee
Confidence 3467776631 10 0 2467788888898 9999877753
No 130
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=81.05 E-value=33 Score=29.14 Aligned_cols=112 Identities=15% Similarity=0.170 Sum_probs=61.0
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHH----HHH----hCCCEE-EEeeecccc
Q 044601 13 SSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVR----ELE----ERGCLV-FYGVDAMQM 83 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~----~L~----~~g~~V-~~gVDAt~L 83 (213)
.+..|||.+|.|.=--++.||++ +.+|||.=+ |+..+..-. .+.++. .+. ..+..| ++-.|...+
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~-S~~Ai~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~ 106 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ---GHRVLGVEL-SEIAVEQFF--AENGLTPTVTQQGEFTRYRAGNIEIFCGDFFAL 106 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC---CCeEEEEeC-CHHHHHHHH--HHcCCCcceeccccceeeecCceEEEEccCCCC
Confidence 45679999999999999999864 567666533 333333200 000110 000 012222 234455555
Q ss_pred CCCccccCCcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCe-EEEEec
Q 044601 84 SQHFFLRTHKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGE-IHVTHK 146 (213)
Q Consensus 84 ~~~~~l~~~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~-ihvTl~ 146 (213)
.... ...||.|+ .. +. .+..++.+-..++++...+|+ |+|. +.+|+.
T Consensus 107 ~~~~---~~~fD~i~-D~---~~--------~~~l~~~~R~~~~~~l~~lLk-pgG~~ll~~~~ 154 (213)
T TIGR03840 107 TAAD---LGPVDAVY-DR---AA--------LIALPEEMRQRYAAHLLALLP-PGARQLLITLD 154 (213)
T ss_pred Cccc---CCCcCEEE-ec---hh--------hccCCHHHHHHHHHHHHHHcC-CCCeEEEEEEE
Confidence 4211 13466553 21 10 122455666789999999998 9997 556664
No 131
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=79.96 E-value=5.5 Score=32.63 Aligned_cols=92 Identities=17% Similarity=0.214 Sum_probs=49.5
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHH-hCCCEEEEeeeccccCCCccccCC
Q 044601 14 SKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELE-ERGCLVFYGVDAMQMSQHFFLRTH 92 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~-~~g~~V~~gVDAt~L~~~~~l~~~ 92 (213)
.+++||++|+=+=.|...|.+. +..+.+-+++- .. ...++ ..++.+.|+++... ..
T Consensus 12 ~~k~vL~~g~~~D~~~~~L~~~---~~~v~~~~~~~----------~~--~~~~~~~~~~~~~f~~~~~~--------~~ 68 (155)
T PF08468_consen 12 EGKSVLFAGDPQDDLPAQLPAI---AVSVHVFSYHH----------WY--ALQKQAQSNVQFHFGAELPA--------DQ 68 (155)
T ss_dssp TT-EEEEEE---SSHHHHS--S---EEEEEESBHHH----------HH--HHHHHHGGGEEE-SS--HHH--------HT
T ss_pred CCCeEEEEcCCchhhHHHhhhc---CCEEEEEEchH----------HH--HHhHhcccCceEeeeccCCc--------cc
Confidence 3578999997776777777643 23444444221 11 11222 23566666666543 25
Q ss_pred cccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEE
Q 044601 93 KFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVT 144 (213)
Q Consensus 93 ~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvT 144 (213)
.||.||+-.| +++.++.--+.++...|. ++|+|.|.
T Consensus 69 ~~D~vvly~P---------------KaK~e~~~lL~~l~~~L~-~g~~i~vV 104 (155)
T PF08468_consen 69 DFDTVVLYWP---------------KAKAEAQYLLANLLSHLP-PGTEIFVV 104 (155)
T ss_dssp T-SEEEEE-----------------SSHHHHHHHHHHHHTTS--TT-EEEEE
T ss_pred CCCEEEEEcc---------------CcHHHHHHHHHHHHHhCC-CCCEEEEE
Confidence 6999999988 455667777888889997 99999886
No 132
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=79.73 E-value=26 Score=27.05 Aligned_cols=83 Identities=23% Similarity=0.252 Sum_probs=51.1
Q ss_pred eEEEEecCC---hhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEE-EEeeeccccCCCccc---
Q 044601 17 RILLVGEGD---FSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLV-FYGVDAMQMSQHFFL--- 89 (213)
Q Consensus 17 ~ILlVGEGn---FSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V-~~gVDAt~L~~~~~l--- 89 (213)
.+|++|-+. .+.+..|+++ + +..|+.++.+ .+.+...+.+++|+..|..+ ....|.++......+
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~-g-~~~v~~~~r~------~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~ 73 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARR-G-ARVVILTSRS------EDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEE 73 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT-T-TEEEEEEESS------CHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhc-C-ceEEEEeeec------ccccccccccccccccccccccccccccccccccccccc
Confidence 567777442 3445555554 2 5677888777 11223445577888777644 455888877644321
Q ss_pred ---cCCcccEEEEcCCcCCCc
Q 044601 90 ---RTHKFDRVIYNFPHVGFI 107 (213)
Q Consensus 90 ---~~~~FDrIiFNFPH~G~~ 107 (213)
+....|.+|.|-......
T Consensus 74 ~~~~~~~ld~li~~ag~~~~~ 94 (167)
T PF00106_consen 74 VIKRFGPLDILINNAGIFSDG 94 (167)
T ss_dssp HHHHHSSESEEEEECSCTTSB
T ss_pred ccccccccccccccccccccc
Confidence 246899999998777743
No 133
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=79.28 E-value=25 Score=30.91 Aligned_cols=110 Identities=25% Similarity=0.367 Sum_probs=67.6
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCC--EEEEeeeccccCCCccccC
Q 044601 14 SKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGC--LVFYGVDAMQMSQHFFLRT 91 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~--~V~~gVDAt~L~~~~~l~~ 91 (213)
++++||=||=|-=-+|..|++..+ ...||+ .|--+.+++ -+. +.+++.|. .-+-.=||..|. +..
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~--~D~s~~ML~---~a~---~k~~~~~~~~i~fv~~dAe~LP----f~D 117 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVG-TGEVVG--LDISESMLE---VAR---EKLKKKGVQNVEFVVGDAENLP----FPD 117 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcC-CceEEE--EECCHHHHH---HHH---HHhhccCccceEEEEechhhCC----CCC
Confidence 789999887777777888898887 445555 453333333 133 33444332 223456898875 458
Q ss_pred CcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCCCCC
Q 044601 92 HKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGDPYN 152 (213)
Q Consensus 92 ~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py~ 152 (213)
+.||+|...|=- |++.. ....++.+..+|+ |+|++.|.=. .+|-+
T Consensus 118 ~sFD~vt~~fgl----------rnv~d----~~~aL~E~~RVlK-pgG~~~vle~-~~p~~ 162 (238)
T COG2226 118 NSFDAVTISFGL----------RNVTD----IDKALKEMYRVLK-PGGRLLVLEF-SKPDN 162 (238)
T ss_pred CccCEEEeeehh----------hcCCC----HHHHHHHHHHhhc-CCeEEEEEEc-CCCCc
Confidence 999999876521 12211 2255677788998 9997666544 34433
No 134
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=78.66 E-value=51 Score=29.81 Aligned_cols=134 Identities=22% Similarity=0.319 Sum_probs=76.2
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHH-hCCCEEEEeeeccccCCCccccCC
Q 044601 14 SKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELE-ERGCLVFYGVDAMQMSQHFFLRTH 92 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~-~~g~~V~~gVDAt~L~~~~~l~~~ 92 (213)
++.+||=||=|+=.++..+++. + +..|+ ..|.......+. ++. -..+. ...+.+ ...|+..+.. ..
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~-g-~~~V~--GiD~S~~~l~q~-~a~--~~~~~~~~~i~~-~~~d~e~lp~-----~~ 188 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGA-G-AKLVV--GIDPSQLFLCQF-EAV--RKLLGNDQRAHL-LPLGIEQLPA-----LK 188 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHc-C-CCEEE--EEcCCHHHHHHH-HHH--HHhcCCCCCeEE-EeCCHHHCCC-----cC
Confidence 4689999997777777777776 3 33444 456333222211 111 11111 123443 3346666632 46
Q ss_pred cccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEe--ccCC------C---C----Ccc---
Q 044601 93 KFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTH--KEGD------P---Y----NKW--- 154 (213)
Q Consensus 93 ~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl--~~~~------p---y----~~W--- 154 (213)
.||.|+.+ |. + .|..=...+|+.+...|+ ++|++.++- .++. | | +.|
T Consensus 189 ~FD~V~s~----~v---------l-~H~~dp~~~L~~l~~~Lk-pGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lp 253 (322)
T PRK15068 189 AFDTVFSM----GV---------L-YHRRSPLDHLKQLKDQLV-PGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIP 253 (322)
T ss_pred CcCEEEEC----Ch---------h-hccCCHHHHHHHHHHhcC-CCcEEEEEEEEecCCCccccCchhHHhcCccceeCC
Confidence 79999963 11 1 111112367888999998 999987752 1211 1 2 123
Q ss_pred ---cHHhHHHHhCcEEEEEeecCC
Q 044601 155 ---ELVKKAEKIGLTLQEVVPFCK 175 (213)
Q Consensus 155 ---~i~~lA~~~gl~l~~~~~F~~ 175 (213)
.+..+.+++||..++.+...+
T Consensus 254 s~~~l~~~L~~aGF~~i~~~~~~~ 277 (322)
T PRK15068 254 SVPALKNWLERAGFKDVRIVDVSV 277 (322)
T ss_pred CHHHHHHHHHHcCCceEEEEeCCC
Confidence 245678899999998876654
No 135
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=78.52 E-value=8.1 Score=36.03 Aligned_cols=104 Identities=17% Similarity=0.053 Sum_probs=60.4
Q ss_pred eEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCCcccE
Q 044601 17 RILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTHKFDR 96 (213)
Q Consensus 17 ~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~~FDr 96 (213)
+||=.-=|-=.++.-.++.......|+|.-.+.. . +..+..|++..+-..+.|.. -||.++-... ..+||.
T Consensus 47 ~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~-A----v~~i~~N~~~N~~~~~~v~~-~Da~~~l~~~---~~~fDv 117 (374)
T TIGR00308 47 NIADALSASGIRAIRYAHEIEGVREVFANDINPK-A----VESIKNNVEYNSVENIEVPN-EDAANVLRYR---NRKFHV 117 (374)
T ss_pred EEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHH-H----HHHHHHHHHHhCCCcEEEEc-hhHHHHHHHh---CCCCCE
Confidence 3433333333344444444322457777655532 2 22366777655433444444 4777764332 357999
Q ss_pred EEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccC
Q 044601 97 VIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEG 148 (213)
Q Consensus 97 IiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~ 148 (213)
|..+=| |... .|+.+|.+.++ .+|-++||--|+
T Consensus 118 IdlDPf--Gs~~----------------~fld~al~~~~-~~glL~vTaTD~ 150 (374)
T TIGR00308 118 IDIDPF--GTPA----------------PFVDSAIQASA-ERGLLLVTATDT 150 (374)
T ss_pred EEeCCC--CCcH----------------HHHHHHHHhcc-cCCEEEEEeccc
Confidence 999743 4211 69999999997 899999995443
No 136
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=78.44 E-value=26 Score=33.39 Aligned_cols=123 Identities=20% Similarity=0.299 Sum_probs=75.1
Q ss_pred EEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEe-eeccccCCCccccCCcccEE
Q 044601 19 LLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYG-VDAMQMSQHFFLRTHKFDRV 97 (213)
Q Consensus 19 LlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~g-VDAt~L~~~~~l~~~~FDrI 97 (213)
|..|=|+||..+| +. ...|+++-...+ .+. .|+.|.+...-.+ |.|. -||.++-.... ....||.|
T Consensus 300 lYCGvG~f~l~lA--~~---~~~V~gvEi~~~-aV~----~A~~NA~~n~i~N--~~f~~~~ae~~~~~~~-~~~~~d~V 366 (432)
T COG2265 300 LYCGVGTFGLPLA--KR---VKKVHGVEISPE-AVE----AAQENAAANGIDN--VEFIAGDAEEFTPAWW-EGYKPDVV 366 (432)
T ss_pred eccCCChhhhhhc--cc---CCEEEEEecCHH-HHH----HHHHHHHHcCCCc--EEEEeCCHHHHhhhcc-ccCCCCEE
Confidence 6788898877766 33 568888877732 232 2666776655545 3333 56666554432 35689999
Q ss_pred EEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCCCCCcccHHhHHHH------hCcEEEEEe
Q 044601 98 IYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGDPYNKWELVKKAEK------IGLTLQEVV 171 (213)
Q Consensus 98 iFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py~~W~i~~lA~~------~gl~l~~~~ 171 (213)
|.+=|-.|-.. .|.+....+- +..-|+|+-. | ..||+. .|+.+.+..
T Consensus 367 vvDPPR~G~~~----------------~~lk~l~~~~--p~~IvYVSCN---P------~TlaRDl~~L~~~gy~i~~v~ 419 (432)
T COG2265 367 VVDPPRAGADR----------------EVLKQLAKLK--PKRIVYVSCN---P------ATLARDLAILASTGYEIERVQ 419 (432)
T ss_pred EECCCCCCCCH----------------HHHHHHHhcC--CCcEEEEeCC---H------HHHHHHHHHHHhCCeEEEEEE
Confidence 99999999531 2333223332 4555666643 2 235553 477899999
Q ss_pred ecCCCCCCCCcc
Q 044601 172 PFCKQDYPGYDN 183 (213)
Q Consensus 172 ~F~~~~yPgY~~ 183 (213)
+|| .||.=.|
T Consensus 420 ~~D--mFP~T~H 429 (432)
T COG2265 420 PFD--MFPHTHH 429 (432)
T ss_pred Eec--cCCCccc
Confidence 997 5665433
No 137
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=77.88 E-value=15 Score=33.63 Aligned_cols=94 Identities=20% Similarity=0.228 Sum_probs=61.9
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHH-hCCCEEEEeeeccccCCCccccCC
Q 044601 14 SKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELE-ERGCLVFYGVDAMQMSQHFFLRTH 92 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~-~~g~~V~~gVDAt~L~~~~~l~~~ 92 (213)
.+++||++|+-+=.|...|+ + ....+..+-|+.. ..|. ..|..+.|+++++... ..
T Consensus 19 ~~~~~l~~~~~~d~~~~~l~-~--~~~~~~~~~~~~~--------------~~~~~~~~~~~~f~~~~~~~~------~~ 75 (342)
T PRK09489 19 EQRRVLFAGDLQDDLPAQLD-A--ASVRVHTQQFHHW--------------QVLSRQMGDNARFSLVATAED------VA 75 (342)
T ss_pred CCCcEEEEcCcchhhHHhhh-c--cceEEehhhhHHH--------------HHHHhhcCCceEeccccCCcc------CC
Confidence 45789999999988888886 1 1223333333322 1222 2466788998887532 25
Q ss_pred cccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEec
Q 044601 93 KFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHK 146 (213)
Q Consensus 93 ~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~ 146 (213)
.||.||.=.|- ++.++..-+..+...|. ++|+|.|.=.
T Consensus 76 ~~d~~~~~~pk---------------~k~~~~~~l~~~~~~l~-~g~~i~~~G~ 113 (342)
T PRK09489 76 DCDTLIYYWPK---------------NKQEAQFQLMNLLSLLP-VGTDIFVVGE 113 (342)
T ss_pred CCCEEEEECCC---------------CHHHHHHHHHHHHHhCC-CCCEEEEEEe
Confidence 69999987773 34555566677788887 9999888743
No 138
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=77.69 E-value=39 Score=27.94 Aligned_cols=129 Identities=20% Similarity=0.158 Sum_probs=67.4
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCC--EEE-EeeeccccCCCccc
Q 044601 13 SSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGC--LVF-YGVDAMQMSQHFFL 89 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~--~V~-~gVDAt~L~~~~~l 89 (213)
.+..+||=||-|.=.|+..|++.. ..+++.-.+ .+.+.. +..+... .+. .|. ...| +..
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~---~~v~~~D~s-~~~i~~----a~~~~~~---~~~~~~i~~~~~d---~~~---- 123 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG---AKVVASDIS-PQMVEE----ARERAPE---AGLAGNITFEVGD---LES---- 123 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC---CEEEEEECC-HHHHHH----HHHHHHh---cCCccCcEEEEcC---chh----
Confidence 456899999988877888888652 345555443 332222 3333322 222 222 2233 221
Q ss_pred cCCcccEEEEcCC--cCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCC------------------
Q 044601 90 RTHKFDRVIYNFP--HVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGD------------------ 149 (213)
Q Consensus 90 ~~~~FDrIiFNFP--H~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~------------------ 149 (213)
....||.|+.+.. |.... . +...++....++ .|.+.|+.....
T Consensus 124 ~~~~fD~v~~~~~l~~~~~~----------~----~~~~l~~l~~~~---~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~ 186 (230)
T PRK07580 124 LLGRFDTVVCLDVLIHYPQE----------D----AARMLAHLASLT---RGSLIFTFAPYTPLLALLHWIGGLFPGPSR 186 (230)
T ss_pred ccCCcCEEEEcchhhcCCHH----------H----HHHHHHHHHhhc---CCeEEEEECCccHHHHHHHHhccccCCccC
Confidence 1367999997654 32210 1 122333333333 233344432211
Q ss_pred -----CCCcccHHhHHHHhCcEEEEEeecCCC
Q 044601 150 -----PYNKWELVKKAEKIGLTLQEVVPFCKQ 176 (213)
Q Consensus 150 -----py~~W~i~~lA~~~gl~l~~~~~F~~~ 176 (213)
.++.-++..+.+.+||.+.+..++...
T Consensus 187 ~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~ 218 (230)
T PRK07580 187 TTRIYPHREKGIRRALAAAGFKVVRTERISSG 218 (230)
T ss_pred CCCccccCHHHHHHHHHHCCCceEeeeeccch
Confidence 122345777888999999998887643
No 139
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=75.77 E-value=4.5 Score=35.28 Aligned_cols=74 Identities=20% Similarity=0.333 Sum_probs=46.4
Q ss_pred ccccCCCccccCCcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCCCCCcccHHhH
Q 044601 80 AMQMSQHFFLRTHKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGDPYNKWELVKK 159 (213)
Q Consensus 80 At~L~~~~~l~~~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py~~W~i~~l 159 (213)
|++| .+-+|.....|.+||-.-..|.. +..|++-|..+|+ ++|.+.|.=...-.-+.=.....
T Consensus 110 acdi-a~vPL~~~svDv~VfcLSLMGTn---------------~~~fi~EA~RvLK-~~G~L~IAEV~SRf~~~~~F~~~ 172 (219)
T PF05148_consen 110 ACDI-ANVPLEDESVDVAVFCLSLMGTN---------------WPDFIREANRVLK-PGGILKIAEVKSRFENVKQFIKA 172 (219)
T ss_dssp ES-T-TS-S--TT-EEEEEEES---SS----------------HHHHHHHHHHHEE-EEEEEEEEEEGGG-S-HHHHHHH
T ss_pred EecC-ccCcCCCCceeEEEEEhhhhCCC---------------cHHHHHHHHheec-cCcEEEEEEecccCcCHHHHHHH
Confidence 4555 33456788999999999999863 3489999999998 99999999765543322222245
Q ss_pred HHHhCcEEEEE
Q 044601 160 AEKIGLTLQEV 170 (213)
Q Consensus 160 A~~~gl~l~~~ 170 (213)
-+..||.+..+
T Consensus 173 ~~~~GF~~~~~ 183 (219)
T PF05148_consen 173 LKKLGFKLKSK 183 (219)
T ss_dssp HHCTTEEEEEE
T ss_pred HHHCCCeEEec
Confidence 55669988876
No 140
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=75.75 E-value=3.8 Score=38.44 Aligned_cols=65 Identities=20% Similarity=0.299 Sum_probs=38.1
Q ss_pred CCCCCeEEEEecCChhHHHH--HHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccC
Q 044601 12 YSSKQRILLVGEGDFSFSLC--LAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMS 84 (213)
Q Consensus 12 y~~~~~ILlVGEGnFSFS~a--La~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~ 84 (213)
|-.++|+.++||++..++++ |.+.+|-....++|.+.+.+.+.+ -++.|.. ++.|+.+-|...|.
T Consensus 287 ~l~Gkrvai~g~~~~~~~la~~L~eelGm~~v~v~t~~~~~~~~~~-------~~~~l~~-~~~v~~~~D~~~l~ 353 (427)
T PRK02842 287 LLRGKRVFFLPDSQLEIPLARFLSRECGMELVEVGTPYLNRRFLAA-------ELALLPD-GVRIVEGQDVERQL 353 (427)
T ss_pred hcCCcEEEEECCchhHHHHHHHHHHhCCCEEEEeCCCCCCHHHHHH-------HHHhccC-CCEEEECCCHHHHH
Confidence 44689999999998665544 444476555556666665543322 1233322 66666666665544
No 141
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=75.06 E-value=20 Score=31.04 Aligned_cols=111 Identities=22% Similarity=0.272 Sum_probs=58.0
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccC
Q 044601 12 YSSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRT 91 (213)
Q Consensus 12 y~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~ 91 (213)
-.++.+||=||=|.=-.+..|++..++...|++ .|--+.+++. +...+.......+. +..-||++|. +..
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~--vD~s~~ML~~---a~~k~~~~~~~~i~-~v~~da~~lp----~~d 114 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVG--VDISPGMLEV---ARKKLKREGLQNIE-FVQGDAEDLP----FPD 114 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEE--EES-HHHHHH---HHHHHHHTT--SEE-EEE-BTTB------S-T
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEE--ecCCHHHHHH---HHHHHHhhCCCCee-EEEcCHHHhc----CCC
Confidence 355789988877776777778888764445554 5633444442 44333322111222 4456888875 346
Q ss_pred CcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEecc
Q 044601 92 HKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKE 147 (213)
Q Consensus 92 ~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~ 147 (213)
+.||.|..-| |.. ++. + ....++.+..+|+ |+|.+.|.=..
T Consensus 115 ~sfD~v~~~f---glr-------n~~-d---~~~~l~E~~RVLk-PGG~l~ile~~ 155 (233)
T PF01209_consen 115 NSFDAVTCSF---GLR-------NFP-D---RERALREMYRVLK-PGGRLVILEFS 155 (233)
T ss_dssp T-EEEEEEES----GG-------G-S-S---HHHHHHHHHHHEE-EEEEEEEEEEE
T ss_pred CceeEEEHHh---hHH-------hhC-C---HHHHHHHHHHHcC-CCeEEEEeecc
Confidence 8999999766 321 111 1 2246788889998 99998765443
No 142
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=74.77 E-value=9.4 Score=28.34 Aligned_cols=112 Identities=16% Similarity=0.200 Sum_probs=58.7
Q ss_pred eEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEE-EEeeeccccCCCccccCCccc
Q 044601 17 RILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLV-FYGVDAMQMSQHFFLRTHKFD 95 (213)
Q Consensus 17 ~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V-~~gVDAt~L~~~~~l~~~~FD 95 (213)
-+|..=||.-+...-++..+. ..++-||-+-.-.. ...+ .+.+++|.+.|..| .|+.+
T Consensus 8 v~ltfDdg~~~~~~~~~~~l~-~~~i~at~fv~~~~-~~~~---~~~l~~l~~~G~ei~~H~~~---------------- 66 (123)
T PF01522_consen 8 VALTFDDGYRDNYDRLLPLLK-KYGIPATFFVIGSW-VERY---PDQLRELAAAGHEIGNHGWS---------------- 66 (123)
T ss_dssp EEEEEESHCHTHHHHHHHHHH-HTT--EEEEE-HHH-HHHH---HHHHHHHHHTT-EEEEE-SS----------------
T ss_pred EEEEEecCchhhHHHHHHHHH-hcccceeeeecccc-cccc---cccchhHHHHHHHHHhcCCc----------------
Confidence 345566666577766666553 44677777776553 3333 45678888888776 44422
Q ss_pred EEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCCCCCcc--cHHhHHHHhCcEE
Q 044601 96 RVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGDPYNKW--ELVKKAEKIGLTL 167 (213)
Q Consensus 96 rIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py~~W--~i~~lA~~~gl~l 167 (213)
+|.......++..+.|...+..|...+-.....+. .||..+ ++..++++.||.+
T Consensus 67 -----H~~~~~~~~~~~~~ei~~~~~~l~~~~g~~~~~f~-------------~P~g~~~~~~~~~l~~~G~~y 122 (123)
T PF01522_consen 67 -----HPNLSTLSPEELRREIERSREILEEITGRPPKGFR-------------YPFGSYDDNTLQALREAGYKY 122 (123)
T ss_dssp -----SSCGGGS-HHHHHHHHHHHHHHHHHHHSSEESEEE--------------GGGEECHHHHHHHHHTT-EE
T ss_pred -----ccccccCCHHHHHHHHHHHHHHHHHHhCCCCcEEE-------------CCCCCCCHHHHHHHHHcCCCc
Confidence 22223323344556676777776666432222222 455544 4556888888875
No 143
>PLN02476 O-methyltransferase
Probab=74.42 E-value=14 Score=33.25 Aligned_cols=113 Identities=15% Similarity=0.038 Sum_probs=69.1
Q ss_pred cccCCCCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhC-CCEEEEeeeccccCCC
Q 044601 8 WSNHYSSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEER-GCLVFYGVDAMQMSQH 86 (213)
Q Consensus 8 ~~~~y~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~-g~~V~~gVDAt~L~~~ 86 (213)
++....+.++||=+|=|-=..|+++|+..+....|++.-.| ++..+ -|..|++..--. .++++.| ||.+.-+.
T Consensus 112 ~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d--~e~~~---~Ar~n~~~aGl~~~I~li~G-dA~e~L~~ 185 (278)
T PLN02476 112 MLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERD--SNSLE---VAKRYYELAGVSHKVNVKHG-LAAESLKS 185 (278)
T ss_pred HHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECC--HHHHH---HHHHHHHHcCCCCcEEEEEc-CHHHHHHH
Confidence 34455678999999999888899999887544456655444 32222 356666543211 2344443 55443211
Q ss_pred ccc--cCCcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEE
Q 044601 87 FFL--RTHKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVT 144 (213)
Q Consensus 87 ~~l--~~~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvT 144 (213)
... ....||.|..+-+. .-...+|.-+.++|+ ++|.|.+-
T Consensus 186 l~~~~~~~~FD~VFIDa~K-----------------~~Y~~y~e~~l~lL~-~GGvIV~D 227 (278)
T PLN02476 186 MIQNGEGSSYDFAFVDADK-----------------RMYQDYFELLLQLVR-VGGVIVMD 227 (278)
T ss_pred HHhcccCCCCCEEEECCCH-----------------HHHHHHHHHHHHhcC-CCcEEEEe
Confidence 111 13579999987552 123367777889998 88887764
No 144
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=74.31 E-value=10 Score=33.01 Aligned_cols=87 Identities=20% Similarity=0.366 Sum_probs=45.2
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCC-----------CCeEEEeccCCHHHHHhhcchHHHHHHHHHhC-CCEEEEeeecc
Q 044601 14 SKQRILLVGEGDFSFSLCLAREFGF-----------AHNMVATCLDTQETIANKYSNAVDNVRELEER-GCLVFYGVDAM 81 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa~~~~~-----------~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~-g~~V~~gVDAt 81 (213)
.++|+|+| |.|.. .+|...++. ..++.|-..|.++.+. .|. ..+++.+... +...+-++.+.
T Consensus 27 ~g~~vLlv-d~D~~--~sl~~~~~~~~~~~~~~~~g~~~L~~~~id~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~ 100 (254)
T cd00550 27 QGKKVLLV-STDPA--HSLSDSFNQEFGKGPTPVKGVENLSAMEIDPQEALE-EYR--QEVLEPIEANLLLEMLKGILEE 100 (254)
T ss_pred CCCCceEE-eCCCc--ccHHHHhCCccCCCCcccccCCCceEEecCHHHHHH-HHH--HHHHHHHHhhccchhHHHHHHH
Confidence 36788888 67774 355554432 2456777777555444 332 2345555442 11111122211
Q ss_pred ccCC-----Cc-------cccCCcccEEEEcCCcCCC
Q 044601 82 QMSQ-----HF-------FLRTHKFDRVIYNFPHVGF 106 (213)
Q Consensus 82 ~L~~-----~~-------~l~~~~FDrIiFNFPH~G~ 106 (213)
.+.. -. .+....||+||++-|-+|.
T Consensus 101 ~~~~Pg~~e~l~~~~~~~~l~~~~yD~VVvDtpPtg~ 137 (254)
T cd00550 101 ELESPGIEEIAAFDEFSRYIDEAEYDVVVFDTAPTGH 137 (254)
T ss_pred HhcCCCHHHHHHHHHHHHHHhcCCCCEEEECCCCcHH
Confidence 1111 00 0123579999999999874
No 145
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=73.99 E-value=4.6 Score=37.73 Aligned_cols=66 Identities=17% Similarity=0.155 Sum_probs=38.8
Q ss_pred CCCCCeEEEEecCChhHHHHH-HHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCC
Q 044601 12 YSSKQRILLVGEGDFSFSLCL-AREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQ 85 (213)
Q Consensus 12 y~~~~~ILlVGEGnFSFS~aL-a~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~ 85 (213)
|-.++|+.++||++..++++= +..+|-....++|.+.+.+...+ .++.|.. ++.|+.+-|...|.+
T Consensus 271 ~l~Gkrv~i~gd~~~~~~l~~~L~elGm~~v~~~t~~~~~~~~~~-------~~~~l~~-~~~v~~~~d~~~l~~ 337 (407)
T TIGR01279 271 LLRGKKIFFFGDNLLELPLARFLKRCGMEVVECGTPYIHRRFHAA-------ELALLEG-GVRIVEQPDFHRQLQ 337 (407)
T ss_pred hcCCCEEEEECCchHHHHHHHHHHHCCCEEEEecCCCCChHHHHH-------HHhhcCC-CCeEEeCCCHHHHHH
Confidence 446899999999998876552 23466444444555555433211 1233333 567777777776654
No 146
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=73.27 E-value=16 Score=31.15 Aligned_cols=111 Identities=17% Similarity=0.171 Sum_probs=77.8
Q ss_pred CCCCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCH--HHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCcc
Q 044601 11 HYSSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQ--ETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFF 88 (213)
Q Consensus 11 ~y~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~--~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~ 88 (213)
-..++.-||=+|=|+==|++++.++-..+..|+|-.++.. ..|.++||+.. +.+-||-.|..+..
T Consensus 45 ~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~-------------ii~gda~~l~~~l~ 111 (194)
T COG3963 45 DPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVN-------------IINGDAFDLRTTLG 111 (194)
T ss_pred CcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCcc-------------ccccchhhHHHHHh
Confidence 4567788999999999999999887666888999888863 67888887643 55667777774433
Q ss_pred -ccCCcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccC
Q 044601 89 -LRTHKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEG 148 (213)
Q Consensus 89 -l~~~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~ 148 (213)
-++..||.||---|-.-+-. +..- ..++++...|. . |...|++.=|
T Consensus 112 e~~gq~~D~viS~lPll~~P~--------~~~i----aile~~~~rl~-~-gg~lvqftYg 158 (194)
T COG3963 112 EHKGQFFDSVISGLPLLNFPM--------HRRI----AILESLLYRLP-A-GGPLVQFTYG 158 (194)
T ss_pred hcCCCeeeeEEeccccccCcH--------HHHH----HHHHHHHHhcC-C-CCeEEEEEec
Confidence 24688999999988887632 1111 34556667775 5 5444555434
No 147
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=72.98 E-value=19 Score=31.10 Aligned_cols=76 Identities=20% Similarity=0.312 Sum_probs=49.8
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccC
Q 044601 12 YSSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRT 91 (213)
Q Consensus 12 y~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~ 91 (213)
-+++++||=||=|-= |..|+..++. + .| +|.|..++|.+ .|..|++.|.-.+|.|.+| |..+ .+. ..
T Consensus 70 ~~~g~~VLEIGtGsG-Y~aAvla~l~-~-~V--~siEr~~~L~~---~A~~~L~~lg~~nV~v~~g-DG~~--G~~--~~ 136 (209)
T COG2518 70 LKPGDRVLEIGTGSG-YQAAVLARLV-G-RV--VSIERIEELAE---QARRNLETLGYENVTVRHG-DGSK--GWP--EE 136 (209)
T ss_pred CCCCCeEEEECCCch-HHHHHHHHHh-C-eE--EEEEEcHHHHH---HHHHHHHHcCCCceEEEEC-Cccc--CCC--CC
Confidence 356799999999953 5555544442 2 44 45666677777 4888988887767777765 3322 111 24
Q ss_pred CcccEEEEc
Q 044601 92 HKFDRVIYN 100 (213)
Q Consensus 92 ~~FDrIiFN 100 (213)
..||+|+..
T Consensus 137 aPyD~I~Vt 145 (209)
T COG2518 137 APYDRIIVT 145 (209)
T ss_pred CCcCEEEEe
Confidence 789999986
No 148
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=72.14 E-value=37 Score=30.14 Aligned_cols=102 Identities=24% Similarity=0.236 Sum_probs=59.3
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCCc
Q 044601 14 SKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTHK 93 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~~ 93 (213)
.+.+||=||=|.=++|.+||+. +.+|+|.=.. ++-+.- |+ +.++++ |+.|=| .+..... ....+.+
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~s-e~~I~~----Ak--~ha~e~-gv~i~y--~~~~~ed-l~~~~~~ 124 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL---GASVTGIDAS-EKPIEV----AK--LHALES-GVNIDY--RQATVED-LASAGGQ 124 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC---CCeeEEecCC-hHHHHH----HH--Hhhhhc-cccccc--hhhhHHH-HHhcCCC
Confidence 5789999999999999999976 4677775433 211111 11 222222 444211 1111111 1112378
Q ss_pred ccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEE
Q 044601 94 FDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVT 144 (213)
Q Consensus 94 FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvT 144 (213)
||.|+-+= +-.|-.=-..|.++|.++++ |+|.+.++
T Consensus 125 FDvV~cmE--------------VlEHv~dp~~~~~~c~~lvk-P~G~lf~S 160 (243)
T COG2227 125 FDVVTCME--------------VLEHVPDPESFLRACAKLVK-PGGILFLS 160 (243)
T ss_pred ccEEEEhh--------------HHHccCCHHHHHHHHHHHcC-CCcEEEEe
Confidence 99998652 11222223359999999998 99997765
No 149
>PRK06128 oxidoreductase; Provisional
Probab=72.08 E-value=66 Score=27.95 Aligned_cols=80 Identities=16% Similarity=0.147 Sum_probs=45.9
Q ss_pred CCeEEEEecCChhHHHHHHHHhC-CCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEE-EEeeeccccCCCccc---
Q 044601 15 KQRILLVGEGDFSFSLCLAREFG-FAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLV-FYGVDAMQMSQHFFL--- 89 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V-~~gVDAt~L~~~~~l--- 89 (213)
+++||+.|= +=..-.++++.+. .+.+|+.+..+.... +..+.++.+++.|..+ .+.+|.++......+
T Consensus 55 ~k~vlITGa-s~gIG~~~a~~l~~~G~~V~i~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~ 127 (300)
T PRK06128 55 GRKALITGA-DSGIGRATAIAFAREGADIALNYLPEEEQ------DAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVER 127 (300)
T ss_pred CCEEEEecC-CCcHHHHHHHHHHHcCCEEEEEeCCcchH------HHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHH
Confidence 478999983 3334445555441 256777776653221 1233456666666544 567888876543221
Q ss_pred ---cCCcccEEEEcC
Q 044601 90 ---RTHKFDRVIYNF 101 (213)
Q Consensus 90 ---~~~~FDrIiFNF 101 (213)
.....|.||.|=
T Consensus 128 ~~~~~g~iD~lV~nA 142 (300)
T PRK06128 128 AVKELGGLDILVNIA 142 (300)
T ss_pred HHHHhCCCCEEEECC
Confidence 124689998875
No 150
>PRK06701 short chain dehydrogenase; Provisional
Probab=71.66 E-value=61 Score=28.19 Aligned_cols=79 Identities=15% Similarity=0.151 Sum_probs=43.1
Q ss_pred CCeEEEEecCChhHHHHHHHHhC-CCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEE-EEeeeccccCCCccc---
Q 044601 15 KQRILLVGEGDFSFSLCLAREFG-FAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLV-FYGVDAMQMSQHFFL--- 89 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V-~~gVDAt~L~~~~~l--- 89 (213)
+++||++|-+.+ --.+|++++. .+..|+.++....+.+. ...+.++..|..+ .+.+|+++......+
T Consensus 46 ~k~iLItGasgg-IG~~la~~l~~~G~~V~l~~r~~~~~~~-------~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 117 (290)
T PRK06701 46 GKVALITGGDSG-IGRAVAVLFAKEGADIAIVYLDEHEDAN-------ETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEE 117 (290)
T ss_pred CCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCcchHHH-------HHHHHHHhcCCeEEEEEccCCCHHHHHHHHHH
Confidence 578999996542 2333333321 24677777665432221 2234455566654 568888876543221
Q ss_pred ---cCCcccEEEEcC
Q 044601 90 ---RTHKFDRVIYNF 101 (213)
Q Consensus 90 ---~~~~FDrIiFNF 101 (213)
.....|.||.|=
T Consensus 118 i~~~~~~iD~lI~~A 132 (290)
T PRK06701 118 TVRELGRLDILVNNA 132 (290)
T ss_pred HHHHcCCCCEEEECC
Confidence 124689888763
No 151
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=71.01 E-value=39 Score=28.69 Aligned_cols=99 Identities=18% Similarity=0.127 Sum_probs=59.9
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCCc
Q 044601 14 SKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTHK 93 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~~ 93 (213)
...+||=+|=|.=.++..|++. +..+++.-+. .++.+. +..+.. ... ....|+..+. +....
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s--~~~l~~---a~~~~~-----~~~-~~~~d~~~~~----~~~~~ 103 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRER---GSQVTALDLS--PPMLAQ---ARQKDA-----ADH-YLAGDIESLP----LATAT 103 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECC--HHHHHH---HHhhCC-----CCC-EEEcCcccCc----CCCCc
Confidence 4578999988776677777653 3566665443 222221 222211 112 2345665542 33568
Q ss_pred ccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEe
Q 044601 94 FDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTH 145 (213)
Q Consensus 94 FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl 145 (213)
||.|+-|++.--.. + +..++..+..+|+ ++|.+.++.
T Consensus 104 fD~V~s~~~l~~~~---d-----------~~~~l~~~~~~Lk-~gG~l~~~~ 140 (251)
T PRK10258 104 FDLAWSNLAVQWCG---N-----------LSTALRELYRVVR-PGGVVAFTT 140 (251)
T ss_pred EEEEEECchhhhcC---C-----------HHHHHHHHHHHcC-CCeEEEEEe
Confidence 99999987643210 0 2467788899998 999998875
No 152
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=70.57 E-value=47 Score=31.87 Aligned_cols=129 Identities=14% Similarity=0.082 Sum_probs=63.8
Q ss_pred CeEE--EEecCChhHHHHHHHH-hC--CCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCcccc
Q 044601 16 QRIL--LVGEGDFSFSLCLARE-FG--FAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLR 90 (213)
Q Consensus 16 ~~IL--lVGEGnFSFS~aLa~~-~~--~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~ 90 (213)
.+|| .+|.|.|.-+.+-.-. .. ....+-.++.|-.+++.. -+..|+..+...+..|..+---........-.
T Consensus 33 ~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~---~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~ 109 (524)
T TIGR02987 33 TKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLK---RAKKLLGEFALLEINVINFNSLSYVLLNIESY 109 (524)
T ss_pred eEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHH---HHHHHHhhcCCCCceeeecccccccccccccc
Confidence 3554 4688877665544221 11 122344455553333333 35566766554444443221000000000001
Q ss_pred CCcccEEEEcCCcCCCcccccchH---------------H----HHh-----h--------HHHHHHHH-HHHHhhcccC
Q 044601 91 THKFDRVIYNFPHVGFIFRENSYC---------------Q----IQL-----N--------KELVKGFL-RNAKLLLKEE 137 (213)
Q Consensus 91 ~~~FDrIiFNFPH~G~~~~e~~~~---------------~----i~~-----n--------~~Ll~~Ff-~Sa~~~L~~~ 137 (213)
...||.||=|=|-...+..+.+.. . ... . ..+...|| +-|..+|+ +
T Consensus 110 ~~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~lL~-~ 188 (524)
T TIGR02987 110 LDLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEIAN-K 188 (524)
T ss_pred cCcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHHhcC-C
Confidence 357999999999988642111110 0 000 0 12444566 56889998 9
Q ss_pred CCeEEEEeccC
Q 044601 138 NGEIHVTHKEG 148 (213)
Q Consensus 138 ~G~ihvTl~~~ 148 (213)
+|.+-+-+-++
T Consensus 189 ~G~~~~I~P~s 199 (524)
T TIGR02987 189 NGYVSIISPAS 199 (524)
T ss_pred CCEEEEEEChH
Confidence 99988776543
No 153
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=70.36 E-value=34 Score=31.33 Aligned_cols=86 Identities=16% Similarity=0.268 Sum_probs=52.4
Q ss_pred CCCeEEEEecC-ChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhC--CCEEEEeeeccccCCCcccc
Q 044601 14 SKQRILLVGEG-DFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEER--GCLVFYGVDAMQMSQHFFLR 90 (213)
Q Consensus 14 ~~~~ILlVGEG-nFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~--g~~V~~gVDAt~L~~~~~l~ 90 (213)
...+||=||=| +.-..+ |+... .+..++||-.|. +.+. .|..|++.--.. .+.++...|...+-......
T Consensus 114 ~~~~vLDIGtGag~I~~l-La~~~-~~~~~~atDId~-~Al~----~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~ 186 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPL-IGVHE-YGWRFVGSDIDP-QALA----SAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHK 186 (321)
T ss_pred CCceEEEecCCccHHHHH-HHhhC-CCCEEEEEeCCH-HHHH----HHHHHHHhccCCcCcEEEEEccchhhhhhccccc
Confidence 46899999999 444433 34333 257899998874 2232 256677643112 34555555555544322112
Q ss_pred CCcccEEEEcCCcCCC
Q 044601 91 THKFDRVIYNFPHVGF 106 (213)
Q Consensus 91 ~~~FDrIiFNFPH~G~ 106 (213)
..+||.||.|=|....
T Consensus 187 ~~~fDlivcNPPf~~s 202 (321)
T PRK11727 187 NERFDATLCNPPFHAS 202 (321)
T ss_pred CCceEEEEeCCCCcCc
Confidence 5689999999998875
No 154
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=70.27 E-value=13 Score=34.29 Aligned_cols=128 Identities=16% Similarity=0.230 Sum_probs=78.5
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccC-CHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccC
Q 044601 13 SSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLD-TQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRT 91 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~d-s~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~ 91 (213)
.+.+++|+||+||=-+-+-.++| .+-.+|+--..| .--++.++|=.+. .-.-..-.+.++-| |.-.+-+.. +.
T Consensus 120 ~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~l--a~gy~~~~v~l~iG-DG~~fl~~~--~~ 193 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTL--ACGYEGKKVKLLIG-DGFLFLEDL--KE 193 (337)
T ss_pred CCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHH--hcccCCCceEEEec-cHHHHHHHh--cc
Confidence 45689999999998888777777 444455555444 2334444442211 00112224667777 888776543 36
Q ss_pred CcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCCCCCcccHHhHHHH
Q 044601 92 HKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGDPYNKWELVKKAEK 162 (213)
Q Consensus 92 ~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py~~W~i~~lA~~ 162 (213)
+.||.||-.=--.= ..........||.....-|+ ++|.+ ++..+ +-|=....+++
T Consensus 194 ~~~dVii~dssdpv----------gpa~~lf~~~~~~~v~~aLk-~dgv~-~~q~e----c~wl~~~~i~e 248 (337)
T KOG1562|consen 194 NPFDVIITDSSDPV----------GPACALFQKPYFGLVLDALK-GDGVV-CTQGE----CMWLHLDYIKE 248 (337)
T ss_pred CCceEEEEecCCcc----------chHHHHHHHHHHHHHHHhhC-CCcEE-EEecc----eehHHHHHHHH
Confidence 88999997643332 23445667899999999997 66654 44433 55655555554
No 155
>PLN03075 nicotianamine synthase; Provisional
Probab=69.45 E-value=78 Score=28.73 Aligned_cols=112 Identities=15% Similarity=0.200 Sum_probs=65.9
Q ss_pred CCCeEEEEecCChhHHHH-HHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEE-EEeeeccccCCCccccC
Q 044601 14 SKQRILLVGEGDFSFSLC-LAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLV-FYGVDAMQMSQHFFLRT 91 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~a-La~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V-~~gVDAt~L~~~~~l~~ 91 (213)
..++||-||=|..-++.. |++.+.+.. .-+.+|..++..+ .|..++.......-+| ..-.||..+... .
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~--~~~giD~d~~ai~---~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~----l 193 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTT--SFHNFDIDPSAND---VARRLVSSDPDLSKRMFFHTADVMDVTES----L 193 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCC--EEEEEeCCHHHHH---HHHHHhhhccCccCCcEEEECchhhcccc----c
Confidence 679999999999877544 454444344 4455664444444 2555554322222233 334677764211 3
Q ss_pred CcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccC
Q 044601 92 HKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEG 148 (213)
Q Consensus 92 ~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~ 148 (213)
..||.|... =-+++. ++ ..+ ..|+.....|+ |+|.+.+-...|
T Consensus 194 ~~FDlVF~~-ALi~~d-k~-------~k~----~vL~~l~~~Lk-PGG~Lvlr~~~G 236 (296)
T PLN03075 194 KEYDVVFLA-ALVGMD-KE-------EKV----KVIEHLGKHMA-PGALLMLRSAHG 236 (296)
T ss_pred CCcCEEEEe-cccccc-cc-------cHH----HHHHHHHHhcC-CCcEEEEecccc
Confidence 569998877 333431 11 111 45566678898 999999988666
No 156
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=68.75 E-value=17 Score=29.16 Aligned_cols=57 Identities=16% Similarity=0.302 Sum_probs=38.4
Q ss_pred CCEEEEeeeccccCCCccccCCcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEecc
Q 044601 71 GCLVFYGVDAMQMSQHFFLRTHKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKE 147 (213)
Q Consensus 71 g~~V~~gVDAt~L~~~~~l~~~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~ 147 (213)
++.++.+ |+.+|. +..+.||.|+.+| +.. ++ .+ ...+|+.+..+|+ |+|.+.|.-..
T Consensus 27 ~i~~~~~-d~~~lp----~~~~~fD~v~~~~---~l~-------~~-~d---~~~~l~ei~rvLk-pGG~l~i~d~~ 83 (160)
T PLN02232 27 CIEWIEG-DAIDLP----FDDCEFDAVTMGY---GLR-------NV-VD---RLRAMKEMYRVLK-PGSRVSILDFN 83 (160)
T ss_pred ceEEEEe-chhhCC----CCCCCeeEEEecc---hhh-------cC-CC---HHHHHHHHHHHcC-cCeEEEEEECC
Confidence 3566665 888874 3467899999865 110 11 11 2378899999998 99999887543
No 157
>PHA03412 putative methyltransferase; Provisional
Probab=68.63 E-value=41 Score=29.75 Aligned_cols=107 Identities=14% Similarity=0.110 Sum_probs=63.6
Q ss_pred CCeEEEEecCChhHHHHHHHHhC--CCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCC
Q 044601 15 KQRILLVGEGDFSFSLCLAREFG--FAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTH 92 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aLa~~~~--~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~ 92 (213)
..+||=+|=|.=.|++++++... ...+|+|--+|... +.. +..|+. .+. ++.-|+.... + ..
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~A-l~~----Ar~n~~-----~~~-~~~~D~~~~~----~-~~ 113 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTY-YKL----GKRIVP-----EAT-WINADALTTE----F-DT 113 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHH-HHH----HHhhcc-----CCE-EEEcchhccc----c-cC
Confidence 57899888888888888887642 24578887777432 111 333432 243 3345654321 1 35
Q ss_pred cccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeE
Q 044601 93 KFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEI 141 (213)
Q Consensus 93 ~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~i 141 (213)
+||.||-|=|..-.+..... .....-.+...|++.|.+++ +.|.+
T Consensus 114 ~FDlIIsNPPY~~~~~~d~~--ar~~g~~~~~~li~~A~~Ll--~~G~~ 158 (241)
T PHA03412 114 LFDMAISNPPFGKIKTSDFK--GKYTGAEFEYKVIERASQIA--RQGTF 158 (241)
T ss_pred CccEEEECCCCCCccccccC--CcccccHHHHHHHHHHHHHc--CCCEE
Confidence 89999999999864321110 00112355667888888866 46665
No 158
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=67.96 E-value=37 Score=29.27 Aligned_cols=52 Identities=17% Similarity=0.228 Sum_probs=34.0
Q ss_pred CCCCCCeEEEEe-cCChh-HHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEE
Q 044601 11 HYSSKQRILLVG-EGDFS-FSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFY 76 (213)
Q Consensus 11 ~y~~~~~ILlVG-EGnFS-FS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~ 76 (213)
...++++||+.| .|... ++..||++.| ..+++|+-. .++.+.|+++|+.-++
T Consensus 140 ~~~~g~~vlI~ga~g~vG~~aiqlA~~~G--~~vi~~~~s------------~~~~~~l~~~Ga~~vi 193 (329)
T cd08294 140 KPKAGETVVVNGAAGAVGSLVGQIAKIKG--CKVIGCAGS------------DDKVAWLKELGFDAVF 193 (329)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEeCC------------HHHHHHHHHcCCCEEE
Confidence 346789999998 57665 5556788875 468887632 1235666777874443
No 159
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=67.70 E-value=30 Score=28.11 Aligned_cols=63 Identities=22% Similarity=0.254 Sum_probs=38.8
Q ss_pred eEEEEe-cCChhH--HHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEE-EEeeeccccCCC
Q 044601 17 RILLVG-EGDFSF--SLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLV-FYGVDAMQMSQH 86 (213)
Q Consensus 17 ~ILlVG-EGnFSF--S~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V-~~gVDAt~L~~~ 86 (213)
.+|+.| -|.+.. +.-|++.. ..+|+.++..+ ..-+.....+++|++.|++| ++.+|+++..+.
T Consensus 2 tylitGG~gglg~~la~~La~~~--~~~~il~~r~~-----~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v 68 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERG--ARRLILLGRSG-----APSAEAEAAIRELESAGARVEYVQCDVTDPEAV 68 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT---SEEEEEESSG-----GGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHH
T ss_pred EEEEECCccHHHHHHHHHHHHcC--CCEEEEeccCC-----CccHHHHHHHHHHHhCCCceeeeccCccCHHHH
Confidence 357776 555443 33344443 67888888874 22234567899999999987 667999987753
No 160
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=67.19 E-value=60 Score=30.29 Aligned_cols=103 Identities=18% Similarity=0.119 Sum_probs=62.5
Q ss_pred CeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCCccc
Q 044601 16 QRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTHKFD 95 (213)
Q Consensus 16 ~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~~FD 95 (213)
.+||=++=|-=.|++.+|++.+ ...|+|.-.+.. ..+ .+..|++...-.+ ...+.-||..+-.. ..+||
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~--Av~---~a~~N~~~N~~~~-~~v~~~Da~~~l~~----~~~fD 127 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETG-VEKVTLNDINPD--AVE---LIKKNLELNGLEN-EKVFNKDANALLHE----ERKFD 127 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHH--HHH---HHHHHHHHhCCCc-eEEEhhhHHHHHhh----cCCCC
Confidence 4676555555455566666554 456777655532 222 2456664433222 23678888764321 35699
Q ss_pred EEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccC
Q 044601 96 RVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEG 148 (213)
Q Consensus 96 rIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~ 148 (213)
.|+.|=| |.. ..|+.+|-..++ ++|-|+||-.|.
T Consensus 128 ~V~lDP~--Gs~----------------~~~l~~al~~~~-~~gilyvSAtD~ 161 (382)
T PRK04338 128 VVDIDPF--GSP----------------APFLDSAIRSVK-RGGLLCVTATDT 161 (382)
T ss_pred EEEECCC--CCc----------------HHHHHHHHHHhc-CCCEEEEEecCc
Confidence 9999944 431 157888788887 899999996554
No 161
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=66.87 E-value=64 Score=28.21 Aligned_cols=120 Identities=18% Similarity=0.230 Sum_probs=64.6
Q ss_pred CCCCeEEEE--ecCC--hhHHHHHHHHhCC----CCeEEEeccCCHH--HHHh-hcchHH-HHH--HHHHh----C-C--
Q 044601 13 SSKQRILLV--GEGD--FSFSLCLAREFGF----AHNMVATCLDTQE--TIAN-KYSNAV-DNV--RELEE----R-G-- 71 (213)
Q Consensus 13 ~~~~~ILlV--GEGn--FSFS~aLa~~~~~----~~~l~ATs~ds~~--~l~~-kY~~a~-~ni--~~L~~----~-g-- 71 (213)
.+..+||-+ |-|. +|.|..|++.... ...|+||=.+... ...+ -|+... .++ ..+++ . |
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 345789887 3455 4555556666532 4679999887531 1122 244321 111 11111 1 1
Q ss_pred -------CEEEE-eeeccccCCCccccCCcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEE
Q 044601 72 -------CLVFY-GVDAMQMSQHFFLRTHKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHV 143 (213)
Q Consensus 72 -------~~V~~-gVDAt~L~~~~~l~~~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihv 143 (213)
-.|.| -.|+.++. ...+.||.|+...= -+..........++....+|+ |+|.+.|
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~----~~~~~fD~I~crnv------------l~yf~~~~~~~~l~~l~~~L~-pGG~L~l 240 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAES----PPLGDFDLIFCRNV------------LIYFDEPTQRKLLNRFAEALK-PGGYLFL 240 (264)
T ss_pred EEChHHhCcCEEeeccCCCCC----CccCCCCEEEechh------------HHhCCHHHHHHHHHHHHHHhC-CCeEEEE
Confidence 12222 23554432 12467999986211 122334455677788889998 9999999
Q ss_pred EeccCC
Q 044601 144 THKEGD 149 (213)
Q Consensus 144 Tl~~~~ 149 (213)
...+.-
T Consensus 241 g~~E~~ 246 (264)
T smart00138 241 GHSESL 246 (264)
T ss_pred ECcccC
Confidence 887653
No 162
>PRK06202 hypothetical protein; Provisional
Probab=66.36 E-value=78 Score=26.56 Aligned_cols=77 Identities=19% Similarity=0.189 Sum_probs=43.2
Q ss_pred CCCCeEEEEecCChhHHHHHHHHh---CCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccc
Q 044601 13 SSKQRILLVGEGDFSFSLCLAREF---GFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFL 89 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~aLa~~~---~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l 89 (213)
.+..+||=||=|.=.++..|++.. +.+.+|+ ..|-.+++.+. +..+. ...++.+.. +|+..+..
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~--gvD~s~~~l~~---a~~~~---~~~~~~~~~-~~~~~l~~---- 125 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVT--AIDPDPRAVAF---ARANP---RRPGVTFRQ-AVSDELVA---- 125 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEE--EEcCCHHHHHH---HHhcc---ccCCCeEEE-Eecccccc----
Confidence 566789988776655666776543 3233554 45533333331 22221 233555443 45655542
Q ss_pred cCCcccEEEEcCC
Q 044601 90 RTHKFDRVIYNFP 102 (213)
Q Consensus 90 ~~~~FDrIiFNFP 102 (213)
....||.|+.|+-
T Consensus 126 ~~~~fD~V~~~~~ 138 (232)
T PRK06202 126 EGERFDVVTSNHF 138 (232)
T ss_pred cCCCccEEEECCe
Confidence 3578999999975
No 163
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=66.17 E-value=8.1 Score=35.82 Aligned_cols=29 Identities=24% Similarity=0.454 Sum_probs=19.1
Q ss_pred CCCeEEEEecCChhHHHH--HHHHhCCCCeEEEe
Q 044601 14 SKQRILLVGEGDFSFSLC--LAREFGFAHNMVAT 45 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~a--La~~~~~~~~l~AT 45 (213)
.++||.++||++..++++ |.+ +| ..++++
T Consensus 275 ~Gkrv~i~g~~~~~~~la~~L~e-lG--m~vv~~ 305 (396)
T cd01979 275 RGKSIFFMGDNLLEIPLARFLTR-CG--MIVVEV 305 (396)
T ss_pred cCCEEEEECCchHHHHHHHHHHH-CC--CEEEee
Confidence 578999999998555444 443 65 454443
No 164
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=66.16 E-value=78 Score=27.45 Aligned_cols=107 Identities=16% Similarity=0.189 Sum_probs=61.0
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccC-CHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCC
Q 044601 14 SKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLD-TQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTH 92 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~d-s~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~ 92 (213)
+..+||=||=|.=.++..|++.+........+..| |.+.+.. +..+ ..++.++. -|+..|. +...
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~----A~~~-----~~~~~~~~-~d~~~lp----~~~~ 150 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKY----AAKR-----YPQVTFCV-ASSHRLP----FADQ 150 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHH----HHHh-----CCCCeEEE-eecccCC----CcCC
Confidence 45789999888778888888776422122345566 3333322 2211 11344333 3666653 3467
Q ss_pred cccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCCCCCcccHHh
Q 044601 93 KFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGDPYNKWELVK 158 (213)
Q Consensus 93 ~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py~~W~i~~ 158 (213)
.||.|+-+|- .. ++.....+|+ |+|.+.+... .+...|++..
T Consensus 151 sfD~I~~~~~--~~-------------------~~~e~~rvLk-pgG~li~~~p--~~~~l~el~~ 192 (272)
T PRK11088 151 SLDAIIRIYA--PC-------------------KAEELARVVK-PGGIVITVTP--GPRHLFELKG 192 (272)
T ss_pred ceeEEEEecC--CC-------------------CHHHHHhhcc-CCCEEEEEeC--CCcchHHHHH
Confidence 8999997762 10 1233466898 9999877543 2345565544
No 165
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=65.89 E-value=29 Score=31.89 Aligned_cols=130 Identities=18% Similarity=0.289 Sum_probs=70.4
Q ss_pred CeEE--EEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCcc-----
Q 044601 16 QRIL--LVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFF----- 88 (213)
Q Consensus 16 ~~IL--lVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~----- 88 (213)
.++| ..|=|.||+ +|++.. ..|+|.-.+. ...+ .+.+|++...-.+++ .+.-||.+.-+...
T Consensus 208 ~~vLDl~~G~G~~sl--~la~~~---~~v~~vE~~~--~ai~---~a~~N~~~~~~~~v~-~~~~d~~~~l~~~~~~~~~ 276 (362)
T PRK05031 208 GDLLELYCGNGNFTL--ALARNF---RRVLATEISK--PSVA---AAQYNIAANGIDNVQ-IIRMSAEEFTQAMNGVREF 276 (362)
T ss_pred CeEEEEeccccHHHH--HHHhhC---CEEEEEECCH--HHHH---HHHHHHHHhCCCcEE-EEECCHHHHHHHHhhcccc
Confidence 3564 556676666 666654 3676665553 2222 355666544222233 45667766321110
Q ss_pred -------ccCCcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCCCCC-cccHHhHH
Q 044601 89 -------LRTHKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGDPYN-KWELVKKA 160 (213)
Q Consensus 89 -------l~~~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py~-~W~i~~lA 160 (213)
.+..+||.||.+=|-.|. ..+++... .+ +.+-|+|+-. |.. -=++..|.
T Consensus 277 ~~~~~~~~~~~~~D~v~lDPPR~G~------------~~~~l~~l-------~~-~~~ivyvSC~---p~tlarDl~~L~ 333 (362)
T PRK05031 277 NRLKGIDLKSYNFSTIFVDPPRAGL------------DDETLKLV-------QA-YERILYISCN---PETLCENLETLS 333 (362)
T ss_pred cccccccccCCCCCEEEECCCCCCC------------cHHHHHHH-------Hc-cCCEEEEEeC---HHHHHHHHHHHc
Confidence 012369999999998663 12222222 22 4556666653 311 12344454
Q ss_pred HHhCcEEEEEeecCCCCCCCCcc
Q 044601 161 EKIGLTLQEVVPFCKQDYPGYDN 183 (213)
Q Consensus 161 ~~~gl~l~~~~~F~~~~yPgY~~ 183 (213)
+ ||.+.+..+|| .||.=.|
T Consensus 334 ~--gY~l~~v~~~D--mFPqT~H 352 (362)
T PRK05031 334 Q--THKVERFALFD--QFPYTHH 352 (362)
T ss_pred C--CcEEEEEEEcc--cCCCCCc
Confidence 2 89999999997 6776444
No 166
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=65.62 E-value=26 Score=33.20 Aligned_cols=88 Identities=16% Similarity=0.277 Sum_probs=55.5
Q ss_pred CCCCeEEEEecCC-hhHHHHHHHHhCCCCeEEEeccCCHHHHHhh-----cchHHHHHHHHHhCCCE-EEEeeeccccCC
Q 044601 13 SSKQRILLVGEGD-FSFSLCLAREFGFAHNMVATCLDTQETIANK-----YSNAVDNVRELEERGCL-VFYGVDAMQMSQ 85 (213)
Q Consensus 13 ~~~~~ILlVGEGn-FSFS~aLa~~~~~~~~l~ATs~ds~~~l~~k-----Y~~a~~ni~~L~~~g~~-V~~gVDAt~L~~ 85 (213)
..++++|++|=.+ ++.+.+.|++++.+.++++++++.... ..+ |-+...-.+.+++.|.. ..+..|+++-..
T Consensus 39 ~ggK~aLVTGaSsGIGlA~~IA~al~~GA~Vi~v~~~~~~~-~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E~ 117 (398)
T PRK13656 39 NGPKKVLVIGASSGYGLASRIAAAFGAGADTLGVFFEKPGT-EKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDEI 117 (398)
T ss_pred CCCCEEEEECCCchHhHHHHHHHHHHcCCeEEEEecCcchh-hhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHHH
Confidence 4468999999876 444444788886678888888874322 222 11333344566677865 457889998654
Q ss_pred Cccc------cCCcccEEEEcC
Q 044601 86 HFFL------RTHKFDRVIYNF 101 (213)
Q Consensus 86 ~~~l------~~~~FDrIiFNF 101 (213)
...+ .-.+.|.+|.|-
T Consensus 118 v~~lie~I~e~~G~IDiLVnSa 139 (398)
T PRK13656 118 KQKVIELIKQDLGQVDLVVYSL 139 (398)
T ss_pred HHHHHHHHHHhcCCCCEEEECC
Confidence 3221 135789999874
No 167
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=65.56 E-value=27 Score=28.46 Aligned_cols=118 Identities=24% Similarity=0.235 Sum_probs=59.3
Q ss_pred CCCCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCcccc
Q 044601 11 HYSSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLR 90 (213)
Q Consensus 11 ~y~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~ 90 (213)
...++.+||=+|=|-==-+.++++.. .+..||+|=++..-++.+ .++..|-. .....+.| ...|-..-.....+.
T Consensus 42 ~~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~~l~~l~--~Ni~~N~~-~~~~~v~v-~~L~Wg~~~~~~~~~ 116 (173)
T PF10294_consen 42 ELFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNEVLELLR--RNIELNGS-LLDGRVSV-RPLDWGDELDSDLLE 116 (173)
T ss_dssp GGTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S-HHHHHH--HHHHTT---------EE-EE--TTS-HHHHHHS
T ss_pred hhcCCceEEEECCccchhHHHHHhcc-CCceEEEeccchhhHHHH--HHHHhccc-cccccccC-cEEEecCcccccccc
Confidence 35567899999988433344444443 477999999886322222 12322222 11111222 122221100011123
Q ss_pred CCcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccC
Q 044601 91 THKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEG 148 (213)
Q Consensus 91 ~~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~ 148 (213)
..+||.||- . .+-.+.+++..++.....+|+ ++|.|.++....
T Consensus 117 ~~~~D~Ila------s--------Dv~Y~~~~~~~L~~tl~~ll~-~~~~vl~~~~~R 159 (173)
T PF10294_consen 117 PHSFDVILA------S--------DVLYDEELFEPLVRTLKRLLK-PNGKVLLAYKRR 159 (173)
T ss_dssp -SSBSEEEE------E--------S--S-GGGHHHHHHHHHHHBT-T-TTEEEEEE-S
T ss_pred cccCCEEEE------e--------cccchHHHHHHHHHHHHHHhC-CCCEEEEEeCEe
Confidence 468999972 1 245677888899999999998 999999998766
No 168
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=64.85 E-value=18 Score=32.87 Aligned_cols=66 Identities=20% Similarity=0.338 Sum_probs=39.9
Q ss_pred CCCCCeEEEEecCChhHHHH-HHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCC
Q 044601 12 YSSKQRILLVGEGDFSFSLC-LAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQ 85 (213)
Q Consensus 12 y~~~~~ILlVGEGnFSFS~a-La~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~ 85 (213)
+-.++++.++||++...+++ +.+.+|-....++|.........+ +..|...+..|+.+.|...+.+
T Consensus 276 ~l~g~~~~i~~~~~~~~~~~~~l~e~G~~v~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~d~~~~~~ 342 (399)
T cd00316 276 YLGGKKVAIFGDGDLLLALARFLLELGMEVVAAGTTFGHKADYER--------REELLGEGTEVVDDGDLEELEE 342 (399)
T ss_pred HhcCCEEEEECCCcHHHHHHHHHHHCCCEEEEEEeCCCCHHHHHH--------HHHhcCCCCEEEeCCCHHHHHH
Confidence 34589999999998877766 344566444445554444332211 4445556666776666666654
No 169
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=64.48 E-value=9.1 Score=26.84 Aligned_cols=67 Identities=19% Similarity=0.315 Sum_probs=41.7
Q ss_pred eEEEEecCChhHHHHHH-HHhCCCCeEEEeccCCHHHHHhhcch--HHHHHHHHHhCCCEEEEeeeccccCCCc
Q 044601 17 RILLVGEGDFSFSLCLA-REFGFAHNMVATCLDTQETIANKYSN--AVDNVRELEERGCLVFYGVDAMQMSQHF 87 (213)
Q Consensus 17 ~ILlVGEGnFSFS~aLa-~~~~~~~~l~ATs~ds~~~l~~kY~~--a~~ni~~L~~~g~~V~~gVDAt~L~~~~ 87 (213)
||++||=|.-+--.|-+ .+++ ..+ |-++..+.+...++. +....+.|++.|+.++++...+.+....
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g--~~v--tli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~ 70 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELG--KEV--TLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDG 70 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--SEE--EEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEET
T ss_pred CEEEECcCHHHHHHHHHHHHhC--cEE--EEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeC
Confidence 68999998765444432 2344 333 334433334433332 2345688999999999999999987553
No 170
>PRK07985 oxidoreductase; Provisional
Probab=64.04 E-value=99 Score=26.91 Aligned_cols=81 Identities=16% Similarity=0.083 Sum_probs=42.3
Q ss_pred CCeEEEEecCChhHHHHHHHHh-CCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEE-EEeeeccccCCCccc---
Q 044601 15 KQRILLVGEGDFSFSLCLAREF-GFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLV-FYGVDAMQMSQHFFL--- 89 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V-~~gVDAt~L~~~~~l--- 89 (213)
++++|+.|=+ =..-.++++.+ ..+.+|+++..+...+- ...-.+.++..|..+ .+.+|+++......+
T Consensus 49 ~k~vlITGas-~gIG~aia~~L~~~G~~Vi~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 121 (294)
T PRK07985 49 DRKALVTGGD-SGIGRAAAIAYAREGADVAISYLPVEEED------AQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHE 121 (294)
T ss_pred CCEEEEECCC-CcHHHHHHHHHHHCCCEEEEecCCcchhh------HHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHH
Confidence 4689999943 23334444433 13567887765432111 111123344456544 567888875432111
Q ss_pred ---cCCcccEEEEcCC
Q 044601 90 ---RTHKFDRVIYNFP 102 (213)
Q Consensus 90 ---~~~~FDrIiFNFP 102 (213)
.....|.+|.|--
T Consensus 122 ~~~~~g~id~lv~~Ag 137 (294)
T PRK07985 122 AHKALGGLDIMALVAG 137 (294)
T ss_pred HHHHhCCCCEEEECCC
Confidence 1246799998743
No 171
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=62.76 E-value=47 Score=28.03 Aligned_cols=100 Identities=27% Similarity=0.334 Sum_probs=60.9
Q ss_pred CCCCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCcccc
Q 044601 11 HYSSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLR 90 (213)
Q Consensus 11 ~y~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~ 90 (213)
.+++..+||=||-|.=+|+.+|++++. ++-+|.+|-.+.+ + .+.. ...+++ ..-|.. ...
T Consensus 97 d~~~~~~vvDvGGG~G~~~~~l~~~~P---~l~~~v~Dlp~v~-~---~~~~------~~rv~~-~~gd~f---~~~--- 156 (241)
T PF00891_consen 97 DFSGFKTVVDVGGGSGHFAIALARAYP---NLRATVFDLPEVI-E---QAKE------ADRVEF-VPGDFF---DPL--- 156 (241)
T ss_dssp TTTTSSEEEEET-TTSHHHHHHHHHST---TSEEEEEE-HHHH-C---CHHH------TTTEEE-EES-TT---TCC---
T ss_pred cccCccEEEeccCcchHHHHHHHHHCC---CCcceeeccHhhh-h---cccc------cccccc-ccccHH---hhh---
Confidence 456678899999999999999999984 5578999975443 3 2332 223333 344443 222
Q ss_pred CCcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCC--CeEEEE
Q 044601 91 THKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEEN--GEIHVT 144 (213)
Q Consensus 91 ~~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~--G~ihvT 144 (213)
.. +|.|++ .|+-..- ..+-....++.+...|. |+ |+|.|-
T Consensus 157 P~-~D~~~l--~~vLh~~----------~d~~~~~iL~~~~~al~-pg~~g~llI~ 198 (241)
T PF00891_consen 157 PV-ADVYLL--RHVLHDW----------SDEDCVKILRNAAAALK-PGKDGRLLII 198 (241)
T ss_dssp SS-ESEEEE--ESSGGGS-----------HHHHHHHHHHHHHHSE-ECTTEEEEEE
T ss_pred cc-ccceee--ehhhhhc----------chHHHHHHHHHHHHHhC-CCCCCeEEEE
Confidence 23 898887 3443211 12333455667788897 87 998775
No 172
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=62.09 E-value=13 Score=34.13 Aligned_cols=89 Identities=18% Similarity=0.263 Sum_probs=54.1
Q ss_pred CeEEEE-ecCChhHHHHHHHHhC-----CCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccc
Q 044601 16 QRILLV-GEGDFSFSLCLAREFG-----FAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFL 89 (213)
Q Consensus 16 ~~ILlV-GEGnFSFS~aLa~~~~-----~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l 89 (213)
+++|+| =|.--|-+-++-..++ -+.||.|..+|+...+.+.+......+..+-. ...+.++-+..+...+-+
T Consensus 31 ~kvLlvStDPAhsL~d~f~~elg~~~~~I~~nL~a~eiD~~~~l~ey~~~v~~~~~~~~~--~~~l~~~~~~e~~~~PGi 108 (322)
T COG0003 31 KKVLLVSTDPAHSLGDVFDLELGHDPRKVGPNLDALELDPEKALEEYWDEVKDYLARLLR--TRGLGGIYADELATLPGI 108 (322)
T ss_pred CcEEEEEeCCCCchHhhhccccCCchhhcCCCCceeeecHHHHHHHHHHHHHHHHHhhcc--ccccchhHHHHHhhCCCH
Confidence 446666 6776666666654443 13689999999987777765555544433322 222244444333332221
Q ss_pred -------------cCCcccEEEEcCCcCCC
Q 044601 90 -------------RTHKFDRVIYNFPHVGF 106 (213)
Q Consensus 90 -------------~~~~FDrIiFNFPH~G~ 106 (213)
....||+|||+-|-+|.
T Consensus 109 dE~~~l~~i~e~~~~~~yD~IV~DtaPTG~ 138 (322)
T COG0003 109 DEALALLKILEYYVSGEYDVIVVDTAPTGH 138 (322)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEcCCChHH
Confidence 24679999999999994
No 173
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=60.88 E-value=31 Score=29.00 Aligned_cols=77 Identities=18% Similarity=0.214 Sum_probs=45.0
Q ss_pred CeEEEEecCChhHHHHHHHHhC-CCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccc-----
Q 044601 16 QRILLVGEGDFSFSLCLAREFG-FAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFL----- 89 (213)
Q Consensus 16 ~~ILlVGEGnFSFS~aLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l----- 89 (213)
++||+.|-+ =..-.++++.+. .+.+|+.++.+. +.+ ....++|++.+-...+.+|.++......+
T Consensus 1 m~vlItGas-~gIG~aia~~l~~~G~~V~~~~r~~-~~~-------~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~ 71 (259)
T PRK08340 1 MNVLVTASS-RGIGFNVARELLKKGARVVISSRNE-ENL-------EKALKELKEYGEVYAVKADLSDKDDLKNLVKEAW 71 (259)
T ss_pred CeEEEEcCC-cHHHHHHHHHHHHcCCEEEEEeCCH-HHH-------HHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHH
Confidence 378999954 345566665542 356788887652 222 22345555555445678888875533211
Q ss_pred -cCCcccEEEEcC
Q 044601 90 -RTHKFDRVIYNF 101 (213)
Q Consensus 90 -~~~~FDrIiFNF 101 (213)
+....|.||.|-
T Consensus 72 ~~~g~id~li~na 84 (259)
T PRK08340 72 ELLGGIDALVWNA 84 (259)
T ss_pred HhcCCCCEEEECC
Confidence 135689998885
No 174
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=60.68 E-value=54 Score=29.66 Aligned_cols=106 Identities=23% Similarity=0.263 Sum_probs=66.4
Q ss_pred CCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCCcc
Q 044601 15 KQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTHKF 94 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~~F 94 (213)
+++||=||=|.==-|-.||+. +.+|++ .|--+++.+-+..- .-.+-..+.+|...-+-+.+.++.. ...|
T Consensus 90 g~~ilDvGCGgGLLSepLArl---ga~V~G--ID~s~~~V~vA~~h-~~~dP~~~~~~~y~l~~~~~~~E~~----~~~f 159 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL---GAQVTG--IDASDDMVEVANEH-KKMDPVLEGAIAYRLEYEDTDVEGL----TGKF 159 (282)
T ss_pred CceEEEeccCccccchhhHhh---CCeeEe--ecccHHHHHHHHHh-hhcCchhccccceeeehhhcchhhc----cccc
Confidence 488999999887677777765 345555 34223333322111 1122223345544444555555433 3459
Q ss_pred cEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEe
Q 044601 95 DRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTH 145 (213)
Q Consensus 95 DrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl 145 (213)
|.|+- ..+-.|-+-+..|..++..+|+ |+|.+.||-
T Consensus 160 DaVvc--------------sevleHV~dp~~~l~~l~~~lk-P~G~lfitt 195 (282)
T KOG1270|consen 160 DAVVC--------------SEVLEHVKDPQEFLNCLSALLK-PNGRLFITT 195 (282)
T ss_pred ceeee--------------HHHHHHHhCHHHHHHHHHHHhC-CCCceEeee
Confidence 99973 2466787889999999999998 999998874
No 175
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=60.60 E-value=92 Score=25.41 Aligned_cols=72 Identities=21% Similarity=0.163 Sum_probs=44.0
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccc-cCCCccccC
Q 044601 13 SSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQ-MSQHFFLRT 91 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~-L~~~~~l~~ 91 (213)
.+..+||=||=|+=.++..|++..+ ..+ +..|..++..+ ..+..++.++. .|+.. +. .+..
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~~--~~~--~giD~s~~~i~----------~a~~~~~~~~~-~d~~~~l~---~~~~ 73 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEKQ--VRG--YGIEIDQDGVL----------ACVARGVNVIQ-GDLDEGLE---AFPD 73 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccC--CcE--EEEeCCHHHHH----------HHHHcCCeEEE-EEhhhccc---ccCC
Confidence 4678999998888888888886642 333 55564333222 22334665543 55543 21 1235
Q ss_pred CcccEEEEcCC
Q 044601 92 HKFDRVIYNFP 102 (213)
Q Consensus 92 ~~FDrIiFNFP 102 (213)
+.||.|+.|.+
T Consensus 74 ~sfD~Vi~~~~ 84 (194)
T TIGR02081 74 KSFDYVILSQT 84 (194)
T ss_pred CCcCEEEEhhH
Confidence 78999999965
No 176
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=60.38 E-value=40 Score=29.30 Aligned_cols=110 Identities=22% Similarity=0.225 Sum_probs=68.8
Q ss_pred ccCCCCCCeEEEEecCChhHHHH-HHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCC-CEEEEeeeccccCCC
Q 044601 9 SNHYSSKQRILLVGEGDFSFSLC-LAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERG-CLVFYGVDAMQMSQH 86 (213)
Q Consensus 9 ~~~y~~~~~ILlVGEGnFSFS~a-La~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g-~~V~~gVDAt~L~~~ 86 (213)
+...+..++||=+|=+ +-||.. +|..+.....||+.-+|++ ++..|.+|+++---.. +.++.+-||...-+.
T Consensus 54 L~~~~~~k~iLEiGT~-~GySal~mA~~l~~~g~l~tiE~~~e-----~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~ 127 (219)
T COG4122 54 LARLSGPKRILEIGTA-IGYSALWMALALPDDGRLTTIERDEE-----RAEIARENLAEAGVDDRIELLLGGDALDVLSR 127 (219)
T ss_pred HHHhcCCceEEEeecc-cCHHHHHHHhhCCCCCeEEEEeCCHH-----HHHHHHHHHHHcCCcceEEEEecCcHHHHHHh
Confidence 3445678899999965 445544 4677653456777766643 2335677776554333 444444587776554
Q ss_pred ccccCCcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEE
Q 044601 87 FFLRTHKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVT 144 (213)
Q Consensus 87 ~~l~~~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvT 144 (213)
+....||.|.-+- .| ..-..||..+-.+|+ ++|-|.+-
T Consensus 128 --~~~~~fDliFIDa----dK-------------~~yp~~le~~~~lLr-~GGliv~D 165 (219)
T COG4122 128 --LLDGSFDLVFIDA----DK-------------ADYPEYLERALPLLR-PGGLIVAD 165 (219)
T ss_pred --ccCCCccEEEEeC----Ch-------------hhCHHHHHHHHHHhC-CCcEEEEe
Confidence 3368899986541 11 223479999999998 88877654
No 177
>PRK05599 hypothetical protein; Provisional
Probab=59.72 E-value=44 Score=28.11 Aligned_cols=76 Identities=18% Similarity=0.264 Sum_probs=46.2
Q ss_pred eEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCC--EEEEeeeccccCCCccc-----
Q 044601 17 RILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGC--LVFYGVDAMQMSQHFFL----- 89 (213)
Q Consensus 17 ~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~--~V~~gVDAt~L~~~~~l----- 89 (213)
.+|+.|=+. ..-+++|+.+..+.+|+.++.+. +.+ ++-.++|++.|. ...+.+|+++......+
T Consensus 2 ~vlItGas~-GIG~aia~~l~~g~~Vil~~r~~-~~~-------~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 72 (246)
T PRK05599 2 SILILGGTS-DIAGEIATLLCHGEDVVLAARRP-EAA-------QGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQ 72 (246)
T ss_pred eEEEEeCcc-HHHHHHHHHHhCCCEEEEEeCCH-HHH-------HHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHH
Confidence 467777543 34455555554467888887653 222 234566666653 34678899987754321
Q ss_pred -cCCcccEEEEcC
Q 044601 90 -RTHKFDRVIYNF 101 (213)
Q Consensus 90 -~~~~FDrIiFNF 101 (213)
...+.|.+|.|.
T Consensus 73 ~~~g~id~lv~na 85 (246)
T PRK05599 73 ELAGEISLAVVAF 85 (246)
T ss_pred HhcCCCCEEEEec
Confidence 135789999875
No 178
>PRK11524 putative methyltransferase; Provisional
Probab=59.43 E-value=19 Score=31.80 Aligned_cols=94 Identities=10% Similarity=0.095 Sum_probs=56.3
Q ss_pred EEEeeeccccCCCccccCCcccEEEEcCCcCCCccccc--chHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCCCC
Q 044601 74 VFYGVDAMQMSQHFFLRTHKFDRVIYNFPHVGFIFREN--SYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGDPY 151 (213)
Q Consensus 74 V~~gVDAt~L~~~~~l~~~~FDrIiFNFPH~G~~~~e~--~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py 151 (213)
-++.-|+.++-+. +...+||.||-|=|.-......+ ...........+..+|..|..+|+ ++|.+.|-.. .. .
T Consensus 10 ~i~~gD~~~~l~~--l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK-~~G~i~i~~~-~~-~ 84 (284)
T PRK11524 10 TIIHGDALTELKK--IPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLK-KQGTMYIMNS-TE-N 84 (284)
T ss_pred EEEeccHHHHHHh--cccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhC-CCcEEEEEcC-ch-h
Confidence 3555677774432 34678999999988743211111 011123455678999999999998 9999988532 11 1
Q ss_pred CcccHHhHHHHhCcEEEEEeecC
Q 044601 152 NKWELVKKAEKIGLTLQEVVPFC 174 (213)
Q Consensus 152 ~~W~i~~lA~~~gl~l~~~~~F~ 174 (213)
-. ...++.+.|+.+.......
T Consensus 85 ~~--~~~~~~~~~f~~~~~iiW~ 105 (284)
T PRK11524 85 MP--FIDLYCRKLFTIKSRIVWS 105 (284)
T ss_pred hh--HHHHHHhcCcceEEEEEEE
Confidence 11 1234556677776665544
No 179
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=59.33 E-value=78 Score=28.99 Aligned_cols=132 Identities=17% Similarity=0.207 Sum_probs=68.5
Q ss_pred CeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCc-c---c--
Q 044601 16 QRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHF-F---L-- 89 (213)
Q Consensus 16 ~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~-~---l-- 89 (213)
.+||=+|=|.=.||++|++.. ..|+|--.+ .+..+ .+.+|++...-.++. .+.-|+.++-... . +
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~--~~av~---~a~~n~~~~~~~~v~-~~~~d~~~~~~~~~~~~~~~~ 269 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF---RRVLATEIA--KPSVN---AAQYNIAANNIDNVQ-IIRMSAEEFTQAMNGVREFRR 269 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC---CEEEEEECC--HHHHH---HHHHHHHHcCCCcEE-EEEcCHHHHHHHHhhcccccc
Confidence 357544444444444777664 255555444 33333 356666544222333 3555766633210 0 0
Q ss_pred -c-----CCcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCCCCC-cccHHhHHHH
Q 044601 90 -R-----THKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGDPYN-KWELVKKAEK 162 (213)
Q Consensus 90 -~-----~~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py~-~W~i~~lA~~ 162 (213)
+ ...||.|+.+=|-.|.. ..++.. +.+ +++-|+|+-. |.. --++..|.
T Consensus 270 ~~~~~~~~~~~d~v~lDPPR~G~~------------~~~l~~-------l~~-~~~ivYvsC~---p~tlaRDl~~L~-- 324 (353)
T TIGR02143 270 LKGIDLKSYNCSTIFVDPPRAGLD------------PDTCKL-------VQA-YERILYISCN---PETLKANLEQLS-- 324 (353)
T ss_pred ccccccccCCCCEEEECCCCCCCc------------HHHHHH-------HHc-CCcEEEEEcC---HHHHHHHHHHHh--
Confidence 1 23489999999987742 122221 222 5666666643 321 12333343
Q ss_pred hCcEEEEEeecCCCCCCCCcc
Q 044601 163 IGLTLQEVVPFCKQDYPGYDN 183 (213)
Q Consensus 163 ~gl~l~~~~~F~~~~yPgY~~ 183 (213)
.+|.+....+|| .||.=.|
T Consensus 325 ~~Y~l~~v~~~D--mFP~T~H 343 (353)
T TIGR02143 325 ETHRVERFALFD--QFPYTHH 343 (353)
T ss_pred cCcEEEEEEEcc--cCCCCCc
Confidence 249999999997 6776444
No 180
>PRK07806 short chain dehydrogenase; Provisional
Probab=59.20 E-value=1e+02 Score=25.44 Aligned_cols=121 Identities=18% Similarity=0.161 Sum_probs=62.2
Q ss_pred CCeEEEEecCChhHHHHHHHHh-CCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCE-EEEeeeccccCCCccc---
Q 044601 15 KQRILLVGEGDFSFSLCLAREF-GFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCL-VFYGVDAMQMSQHFFL--- 89 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~-V~~gVDAt~L~~~~~l--- 89 (213)
+++||+.|=..| --.+|++.+ ..+.+|++++....+. .....+.|+..+.. ..+..|+++......+
T Consensus 6 ~k~vlItGasgg-iG~~l~~~l~~~G~~V~~~~r~~~~~-------~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~ 77 (248)
T PRK07806 6 GKTALVTGSSRG-IGADTAKILAGAGAHVVVNYRQKAPR-------ANKVVAEIEAAGGRASAVGADLTDEESVAALMDT 77 (248)
T ss_pred CcEEEEECCCCc-HHHHHHHHHHHCCCEEEEEeCCchHh-------HHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 478999996443 344445443 2356888877653221 12234455555554 3567899887643221
Q ss_pred ---cCCcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCe-EEEEe
Q 044601 90 ---RTHKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGE-IHVTH 145 (213)
Q Consensus 90 ---~~~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~-ihvTl 145 (213)
+....|.||.|-...... ..+....+..|-.-....++.+.+.+. .+|+ |+|+-
T Consensus 78 ~~~~~~~~d~vi~~ag~~~~~-~~~~~~~~~vn~~~~~~l~~~~~~~~~-~~~~iv~isS 135 (248)
T PRK07806 78 AREEFGGLDALVLNASGGMES-GMDEDYAMRLNRDAQRNLARAALPLMP-AGSRVVFVTS 135 (248)
T ss_pred HHHhCCCCcEEEECCCCCCCC-CCCcceeeEeeeHHHHHHHHHHHhhcc-CCceEEEEeC
Confidence 114689988876322111 001111222333333445566666665 5566 44543
No 181
>PRK12744 short chain dehydrogenase; Provisional
Probab=57.00 E-value=1.2e+02 Score=25.42 Aligned_cols=81 Identities=16% Similarity=0.181 Sum_probs=43.8
Q ss_pred CCeEEEEecCChhHHHHHHHHhC-CCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEE-EEeeeccccCCCccc---
Q 044601 15 KQRILLVGEGDFSFSLCLAREFG-FAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLV-FYGVDAMQMSQHFFL--- 89 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V-~~gVDAt~L~~~~~l--- 89 (213)
++++|+.|=..+ .-.++++.+. .+..++..+..+.... + ......++|+..++++ .+.+|.++...-..+
T Consensus 8 ~k~vlItGa~~g-IG~~~a~~l~~~G~~vv~i~~~~~~~~-~---~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~ 82 (257)
T PRK12744 8 GKVVLIAGGAKN-LGGLIARDLAAQGAKAVAIHYNSAASK-A---DAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDD 82 (257)
T ss_pred CcEEEEECCCch-HHHHHHHHHHHCCCcEEEEecCCccch-H---HHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHH
Confidence 478999985543 4555555442 2445444443321110 0 1233456676667654 568899876643221
Q ss_pred ---cCCcccEEEEc
Q 044601 90 ---RTHKFDRVIYN 100 (213)
Q Consensus 90 ---~~~~FDrIiFN 100 (213)
...+.|.||.|
T Consensus 83 ~~~~~~~id~li~~ 96 (257)
T PRK12744 83 AKAAFGRPDIAINT 96 (257)
T ss_pred HHHhhCCCCEEEEC
Confidence 12468988755
No 182
>PLN02672 methionine S-methyltransferase
Probab=56.89 E-value=2.8e+02 Score=29.82 Aligned_cols=143 Identities=15% Similarity=0.157 Sum_probs=83.6
Q ss_pred CCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHH--HhCC------------CEE-EEeee
Q 044601 15 KQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVREL--EERG------------CLV-FYGVD 79 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L--~~~g------------~~V-~~gVD 79 (213)
+.+||=+|=|+=-.+.+|++... ...++|+=.+ .+.+.. +..|++.. ...| .+| ++.-|
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis-~~Al~~----A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sD 192 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWL-PSKVYGLDIN-PRAVKV----AWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESD 192 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCC-CCEEEEEECC-HHHHHH----HHHHHHHcCcccccccccccccccccccEEEEECc
Confidence 36899999998888888888864 4578887444 333333 55666542 1111 112 22234
Q ss_pred ccccCCCccccCCcccEEEEcCCcCCCcccccchHHHHhh------------------------HHHHHHHHHHHHhhcc
Q 044601 80 AMQMSQHFFLRTHKFDRVIYNFPHVGFIFRENSYCQIQLN------------------------KELVKGFLRNAKLLLK 135 (213)
Q Consensus 80 At~L~~~~~l~~~~FDrIiFNFPH~G~~~~e~~~~~i~~n------------------------~~Ll~~Ff~Sa~~~L~ 135 (213)
.... ..-...+||.||=|=|=+...-.+.....++.+ -.+++.....|..+|+
T Consensus 193 l~~~---~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~ 269 (1082)
T PLN02672 193 LLGY---CRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIK 269 (1082)
T ss_pred hhhh---ccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhcc
Confidence 3321 110123699999999988743111111222211 1345777888999998
Q ss_pred cCCCeEEEEeccCCCCCcccHH-hHHHHhCcEEEEE
Q 044601 136 EENGEIHVTHKEGDPYNKWELV-KKAEKIGLTLQEV 170 (213)
Q Consensus 136 ~~~G~ihvTl~~~~py~~W~i~-~lA~~~gl~l~~~ 170 (213)
++|.+.+-+-..+ .. .+. .+.++.|+.....
T Consensus 270 -pgG~l~lEiG~~q-~~--~v~~~l~~~~gf~~~~~ 301 (1082)
T PLN02672 270 -PMGIMIFNMGGRP-GQ--AVCERLFERRGFRITKL 301 (1082)
T ss_pred -CCCEEEEEECccH-HH--HHHHHHHHHCCCCeeEE
Confidence 9999888874322 11 345 4666778766555
No 183
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=56.82 E-value=68 Score=27.20 Aligned_cols=101 Identities=22% Similarity=0.315 Sum_probs=55.4
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHH-HhCCCEEEEeeeccccCCCcccc
Q 044601 12 YSSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVREL-EERGCLVFYGVDAMQMSQHFFLR 90 (213)
Q Consensus 12 y~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L-~~~g~~V~~gVDAt~L~~~~~l~ 90 (213)
+-+..++|-+|.|.=-=|+-||+. +..| |+.|..+. +.+.++.+ ++.++.|-. ...+|.+.. +
T Consensus 28 ~~~~g~~LDlgcG~GRNalyLA~~---G~~V--tAvD~s~~-------al~~l~~~a~~~~l~i~~--~~~Dl~~~~-~- 91 (192)
T PF03848_consen 28 LLKPGKALDLGCGEGRNALYLASQ---GFDV--TAVDISPV-------ALEKLQRLAEEEGLDIRT--RVADLNDFD-F- 91 (192)
T ss_dssp TS-SSEEEEES-TTSHHHHHHHHT---T-EE--EEEESSHH-------HHHHHHHHHHHTT-TEEE--EE-BGCCBS---
T ss_pred hcCCCcEEEcCCCCcHHHHHHHHC---CCeE--EEEECCHH-------HHHHHHHHHhhcCceeEE--EEecchhcc-c-
Confidence 345689999999988888888865 4554 55664332 22333333 234554321 122333222 2
Q ss_pred CCcccEEEEc--CCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEE
Q 044601 91 THKFDRVIYN--FPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHV 143 (213)
Q Consensus 91 ~~~FDrIiFN--FPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihv 143 (213)
...||.|+-- |.| .++.++...+.+-+.-++ |+|.+.+
T Consensus 92 ~~~yD~I~st~v~~f--------------L~~~~~~~i~~~m~~~~~-pGG~~li 131 (192)
T PF03848_consen 92 PEEYDFIVSTVVFMF--------------LQRELRPQIIENMKAATK-PGGYNLI 131 (192)
T ss_dssp TTTEEEEEEESSGGG--------------S-GGGHHHHHHHHHHTEE-EEEEEEE
T ss_pred cCCcCEEEEEEEecc--------------CCHHHHHHHHHHHHhhcC-CcEEEEE
Confidence 3579998742 222 334555677888888887 9998555
No 184
>PRK06953 short chain dehydrogenase; Provisional
Probab=56.67 E-value=1.1e+02 Score=25.01 Aligned_cols=74 Identities=18% Similarity=0.250 Sum_probs=40.3
Q ss_pred CeEEEEecCChhHHHHHHHHh-CCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCcc----cc
Q 044601 16 QRILLVGEGDFSFSLCLAREF-GFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFF----LR 90 (213)
Q Consensus 16 ~~ILlVGEGnFSFS~aLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~----l~ 90 (213)
+++|+.|=.. ....++++++ ..+..|+++..+.+ .+++++..++. .+.+|.++...... +.
T Consensus 2 ~~vlvtG~sg-~iG~~la~~L~~~G~~v~~~~r~~~------------~~~~~~~~~~~-~~~~D~~~~~~v~~~~~~~~ 67 (222)
T PRK06953 2 KTVLIVGASR-GIGREFVRQYRADGWRVIATARDAA------------ALAALQALGAE-ALALDVADPASVAGLAWKLD 67 (222)
T ss_pred ceEEEEcCCC-chhHHHHHHHHhCCCEEEEEECCHH------------HHHHHHhccce-EEEecCCCHHHHHHHHHHhc
Confidence 4678887543 2333333333 12567777765521 12344445654 56788887653322 22
Q ss_pred CCcccEEEEcCCc
Q 044601 91 THKFDRVIYNFPH 103 (213)
Q Consensus 91 ~~~FDrIiFNFPH 103 (213)
..++|.||+|=.-
T Consensus 68 ~~~~d~vi~~ag~ 80 (222)
T PRK06953 68 GEALDAAVYVAGV 80 (222)
T ss_pred CCCCCEEEECCCc
Confidence 3468999887443
No 185
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=56.19 E-value=37 Score=30.92 Aligned_cols=65 Identities=15% Similarity=0.316 Sum_probs=41.9
Q ss_pred cCCcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCCCCCcccHHhHHHHhCcEEEE
Q 044601 90 RTHKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGDPYNKWELVKKAEKIGLTLQE 169 (213)
Q Consensus 90 ~~~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py~~W~i~~lA~~~gl~l~~ 169 (213)
.....|.+||=.-..|.. +..|+.-|..+|+ ++|.++|.-...-.-+.=.....-...||.+..
T Consensus 225 ~d~svDvaV~CLSLMgtn---------------~~df~kEa~RiLk-~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~ 288 (325)
T KOG3045|consen 225 EDESVDVAVFCLSLMGTN---------------LADFIKEANRILK-PGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKH 288 (325)
T ss_pred ccCcccEEEeeHhhhccc---------------HHHHHHHHHHHhc-cCceEEEEehhhhcccHHHHHHHHHHcCCeeee
Confidence 445666666655555531 5699999999998 999999997665433333333344455665544
Q ss_pred E
Q 044601 170 V 170 (213)
Q Consensus 170 ~ 170 (213)
+
T Consensus 289 ~ 289 (325)
T KOG3045|consen 289 K 289 (325)
T ss_pred h
Confidence 3
No 186
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=55.33 E-value=19 Score=25.81 Aligned_cols=97 Identities=20% Similarity=0.212 Sum_probs=42.9
Q ss_pred EecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCCcccEEEEc
Q 044601 21 VGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTHKFDRVIYN 100 (213)
Q Consensus 21 VGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~~FDrIiFN 100 (213)
||=|.=+++..|++++ +..+++++=.. +..+ ++ +++.+...... ......++...+.... ....||.|+.+
T Consensus 3 iGcG~G~~~~~l~~~~-~~~~~~~~D~s-~~~l-~~---a~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~fD~V~~~ 73 (99)
T PF08242_consen 3 IGCGTGRLLRALLEEL-PDARYTGVDIS-PSML-ER---ARERLAELGND-NFERLRFDVLDLFDYD--PPESFDLVVAS 73 (99)
T ss_dssp ESTTTS-TTTTHHHHC--EEEEEEEESS-SSTT-ST---TCCCHHHCT----EEEEE--SSS---CC--C----SEEEEE
T ss_pred eCccChHHHHHHHHhC-CCCEEEEEECC-HHHH-HH---HHHHhhhcCCc-ceeEEEeecCChhhcc--cccccceehhh
Confidence 5666666777777776 35566654333 2222 21 22222222221 2223344444433322 12689999987
Q ss_pred CCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeE
Q 044601 101 FPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEI 141 (213)
Q Consensus 101 FPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~i 141 (213)
+-.-=. .=+..+++++..+|+ |+|.+
T Consensus 74 ~vl~~l--------------~~~~~~l~~~~~~L~-pgG~l 99 (99)
T PF08242_consen 74 NVLHHL--------------EDIEAVLRNIYRLLK-PGGIL 99 (99)
T ss_dssp -TTS----------------S-HHHHHHHHTTT-T-SS-EE
T ss_pred hhHhhh--------------hhHHHHHHHHHHHcC-CCCCC
Confidence 432221 223488899999998 99975
No 187
>KOG3889 consensus Predicted gamma-butyrobetaine,2-oxoglutarate dioxygenase [Lipid transport and metabolism]
Probab=55.27 E-value=33 Score=31.40 Aligned_cols=114 Identities=15% Similarity=0.300 Sum_probs=71.4
Q ss_pred CCeEEEeccCCHHHHHhhcchHHHHH-------HHHHhCCCEEEEeeeccccCCCc-------cccCCcccEEEEcCCcC
Q 044601 39 AHNMVATCLDTQETIANKYSNAVDNV-------RELEERGCLVFYGVDAMQMSQHF-------FLRTHKFDRVIYNFPHV 104 (213)
Q Consensus 39 ~~~l~ATs~ds~~~l~~kY~~a~~ni-------~~L~~~g~~V~~gVDAt~L~~~~-------~l~~~~FDrIiFNFPH~ 104 (213)
+.++..-+|--.++|+++||.+-+.+ ++++..|-.-.|.|-....-..- .++-+.+||-+||-
T Consensus 217 G~t~lVDgfy~ae~l~~~~Pe~feiLc~v~i~heYiE~~ge~h~H~v~~~p~v~~~p~~~e~~qiR~N~YDRAvfnt--- 293 (371)
T KOG3889|consen 217 GDTVLVDGFYCAEKLRNESPEDFEILCNVKISHEYIEGSGESHIHSVSLEPPVIERPSFGEITQIRFNPYDRAVFNT--- 293 (371)
T ss_pred CceEEEehHHHHHHHHhhChHhhhHhhcCccchhhhcCCCcccceeeccCCceEecCCCCceEEEEecccchhhhcc---
Confidence 44566666666799999999976643 45566554445555332222111 13457789998884
Q ss_pred CCcccccchHHHHhhHHHHHHHHHHHHhh---cccCCCeEEEEeccCC--CCCcccHHhHHHHhCcEEEEEeecCCCCCC
Q 044601 105 GFIFRENSYCQIQLNKELVKGFLRNAKLL---LKEENGEIHVTHKEGD--PYNKWELVKKAEKIGLTLQEVVPFCKQDYP 179 (213)
Q Consensus 105 G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~---L~~~~G~ihvTl~~~~--py~~W~i~~lA~~~gl~l~~~~~F~~~~yP 179 (213)
.++.-+..|+.+-+++ +++|+-++.|.|+.|. ..+.|.|-. + .+.|-
T Consensus 294 -------------~p~ae~~~fY~a~r~l~~i~r~p~n~~~ikL~PGsvifiDNwRvLH----------g-----Re~ft 345 (371)
T KOG3889|consen 294 -------------LPAAETIKFYEAYRKLSKICRNPDNSIEIKLRPGSVIFIDNWRVLH----------G-----RESFT 345 (371)
T ss_pred -------------CCHHHHHHHHHHHHHHHHHhcCccceEEEEecCceEEEEeceeEec----------C-----ccccc
Confidence 2344455777776554 3458899999999885 357786532 2 25677
Q ss_pred CCcc
Q 044601 180 GYDN 183 (213)
Q Consensus 180 gY~~ 183 (213)
||+.
T Consensus 346 GyRq 349 (371)
T KOG3889|consen 346 GYRQ 349 (371)
T ss_pred chhh
Confidence 8875
No 188
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=54.81 E-value=51 Score=27.73 Aligned_cols=76 Identities=14% Similarity=0.162 Sum_probs=45.6
Q ss_pred CCCeEEEEecCChhHHHHHHHHh-CCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEE-EEeeeccccCCCccc--
Q 044601 14 SKQRILLVGEGDFSFSLCLAREF-GFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLV-FYGVDAMQMSQHFFL-- 89 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V-~~gVDAt~L~~~~~l-- 89 (213)
+++++|+.| |.=..-.++++++ ..+.+|+++..+..+. ..+.+++.|..+ .+.+|.++......+
T Consensus 7 ~~k~~lItG-as~gIG~aia~~l~~~G~~vv~~~~~~~~~----------~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 75 (251)
T PRK12481 7 NGKVAIITG-CNTGLGQGMAIGLAKAGADIVGVGVAEAPE----------TQAQVEALGRKFHFITADLIQQKDIDSIVS 75 (251)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEecCchHHH----------HHHHHHHcCCeEEEEEeCCCCHHHHHHHHH
Confidence 357889998 3335666666554 2357888776543221 223444556554 578899887654322
Q ss_pred ----cCCcccEEEEc
Q 044601 90 ----RTHKFDRVIYN 100 (213)
Q Consensus 90 ----~~~~FDrIiFN 100 (213)
...+.|.+|.|
T Consensus 76 ~~~~~~g~iD~lv~~ 90 (251)
T PRK12481 76 QAVEVMGHIDILINN 90 (251)
T ss_pred HHHHHcCCCCEEEEC
Confidence 12568988876
No 189
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=54.16 E-value=1.6e+02 Score=26.15 Aligned_cols=119 Identities=14% Similarity=0.074 Sum_probs=64.2
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEE-EeeeccccCCCcccc
Q 044601 12 YSSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVF-YGVDAMQMSQHFFLR 90 (213)
Q Consensus 12 y~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~-~gVDAt~L~~~~~l~ 90 (213)
..+..+||=+|=|+=.++..|++++..+..+ +.+|--+++++ .+..++..- --++.|. ..-|.++........
T Consensus 61 ~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~--~~iDiS~~mL~---~a~~~l~~~-~p~~~v~~i~gD~~~~~~~~~~~ 134 (301)
T TIGR03438 61 TGAGCELVELGSGSSRKTRLLLDALRQPARY--VPIDISADALK---ESAAALAAD-YPQLEVHGICADFTQPLALPPEP 134 (301)
T ss_pred hCCCCeEEecCCCcchhHHHHHHhhccCCeE--EEEECCHHHHH---HHHHHHHhh-CCCceEEEEEEcccchhhhhccc
Confidence 3456789999999999999999987433444 56673333333 133333220 1244442 233666532111100
Q ss_pred CCcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccC
Q 044601 91 THKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEG 148 (213)
Q Consensus 91 ~~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~ 148 (213)
... +++++ |+-.... ...+.=...||+.+...|+ |+|.+.|.+-..
T Consensus 135 ~~~-~~~~~-~~gs~~~---------~~~~~e~~~~L~~i~~~L~-pgG~~lig~d~~ 180 (301)
T TIGR03438 135 AAG-RRLGF-FPGSTIG---------NFTPEEAVAFLRRIRQLLG-PGGGLLIGVDLV 180 (301)
T ss_pred ccC-CeEEE-Eeccccc---------CCCHHHHHHHHHHHHHhcC-CCCEEEEeccCC
Confidence 011 33333 1111110 0123335689999999998 999988876443
No 190
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=53.09 E-value=37 Score=24.96 Aligned_cols=70 Identities=24% Similarity=0.262 Sum_probs=45.3
Q ss_pred EEEEecCChhHHHHHHHHhCC-CCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCCcccE
Q 044601 18 ILLVGEGDFSFSLCLAREFGF-AHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTHKFDR 96 (213)
Q Consensus 18 ILlVGEGnFSFS~aLa~~~~~-~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~~FDr 96 (213)
|+++|=|. ++..|++.+.. ...++.-..|. +.++.+++.|..+++ -|+++........-...|.
T Consensus 1 vvI~G~g~--~~~~i~~~L~~~~~~vvvid~d~------------~~~~~~~~~~~~~i~-gd~~~~~~l~~a~i~~a~~ 65 (116)
T PF02254_consen 1 VVIIGYGR--IGREIAEQLKEGGIDVVVIDRDP------------ERVEELREEGVEVIY-GDATDPEVLERAGIEKADA 65 (116)
T ss_dssp EEEES-SH--HHHHHHHHHHHTTSEEEEEESSH------------HHHHHHHHTTSEEEE-S-TTSHHHHHHTTGGCESE
T ss_pred eEEEcCCH--HHHHHHHHHHhCCCEEEEEECCc------------HHHHHHHhccccccc-ccchhhhHHhhcCccccCE
Confidence 68999995 66666666532 23566665552 337778888988777 6888776544444567888
Q ss_pred EEEcCC
Q 044601 97 VIYNFP 102 (213)
Q Consensus 97 IiFNFP 102 (213)
||--.|
T Consensus 66 vv~~~~ 71 (116)
T PF02254_consen 66 VVILTD 71 (116)
T ss_dssp EEEESS
T ss_pred EEEccC
Confidence 887666
No 191
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=52.99 E-value=46 Score=29.43 Aligned_cols=95 Identities=22% Similarity=0.366 Sum_probs=54.9
Q ss_pred CeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEE--EeeeccccCCCccccCCcccEEEEcCCcCCCcccccchHHHH
Q 044601 40 HNMVATCLDTQETIANKYSNAVDNVRELEERGCLVF--YGVDAMQMSQHFFLRTHKFDRVIYNFPHVGFIFRENSYCQIQ 117 (213)
Q Consensus 40 ~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~--~gVDAt~L~~~~~l~~~~FDrIiFNFPH~G~~~~e~~~~~i~ 117 (213)
.....|++|+.+-+.+ |-+. ..-++..-.|. -=-|+.+|.+ +...++|.||--|=.+... +..
T Consensus 98 p~~svt~lDpn~~mee-~~~k----s~~E~k~~~~~~fvva~ge~l~~---l~d~s~DtVV~TlvLCSve---~~~---- 162 (252)
T KOG4300|consen 98 PINSVTCLDPNEKMEE-IADK----SAAEKKPLQVERFVVADGENLPQ---LADGSYDTVVCTLVLCSVE---DPV---- 162 (252)
T ss_pred CCceEEEeCCcHHHHH-HHHH----HHhhccCcceEEEEeechhcCcc---cccCCeeeEEEEEEEeccC---CHH----
Confidence 3567799997543332 2211 11122333343 2235566643 4578999999888777642 211
Q ss_pred hhHHHHHHHHHHHHhhcccCCCe-EEEEeccCCCCCcccHHh
Q 044601 118 LNKELVKGFLRNAKLLLKEENGE-IHVTHKEGDPYNKWELVK 158 (213)
Q Consensus 118 ~n~~Ll~~Ff~Sa~~~L~~~~G~-ihvTl~~~~py~~W~i~~ 158 (213)
.-+.+.+.+|+ |+|. |.|.|..+ +|..||-.-
T Consensus 163 -------k~L~e~~rlLR-pgG~iifiEHva~-~y~~~n~i~ 195 (252)
T KOG4300|consen 163 -------KQLNEVRRLLR-PGGRIIFIEHVAG-EYGFWNRIL 195 (252)
T ss_pred -------HHHHHHHHhcC-CCcEEEEEecccc-cchHHHHHH
Confidence 22345578998 9998 45666665 588877554
No 192
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=52.58 E-value=64 Score=26.91 Aligned_cols=79 Identities=14% Similarity=0.173 Sum_probs=45.5
Q ss_pred CCCeEEEEecCChhHHHHHHHHh-CCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEE-EEeeeccccCCCccc--
Q 044601 14 SKQRILLVGEGDFSFSLCLAREF-GFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLV-FYGVDAMQMSQHFFL-- 89 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V-~~gVDAt~L~~~~~l-- 89 (213)
++++||+.| |.=....++++++ ..+.+|+.+..+. +.+ ....+.++..|..+ .+..|.++......+
T Consensus 9 ~~k~vlItG-a~g~iG~~ia~~l~~~G~~V~~~~r~~-~~~-------~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~ 79 (255)
T PRK07523 9 TGRRALVTG-SSQGIGYALAEGLAQAGAEVILNGRDP-AKL-------AAAAESLKGQGLSAHALAFDVTDHDAVRAAID 79 (255)
T ss_pred CCCEEEEEC-CcchHHHHHHHHHHHcCCEEEEEeCCH-HHH-------HHHHHHHHhcCceEEEEEccCCCHHHHHHHHH
Confidence 468899999 3334555665554 2356888877653 222 12244556656544 566788876543221
Q ss_pred ----cCCcccEEEEcC
Q 044601 90 ----RTHKFDRVIYNF 101 (213)
Q Consensus 90 ----~~~~FDrIiFNF 101 (213)
.....|.||.|-
T Consensus 80 ~~~~~~~~~d~li~~a 95 (255)
T PRK07523 80 AFEAEIGPIDILVNNA 95 (255)
T ss_pred HHHHhcCCCCEEEECC
Confidence 124578887764
No 193
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=52.56 E-value=1.8e+02 Score=27.52 Aligned_cols=85 Identities=24% Similarity=0.200 Sum_probs=55.9
Q ss_pred CCEEEEeeeccccCCCc-----cccCCcccEEEEcCCcCCCcccccchHHHHh----------hHHHHHHHHHHHHhhcc
Q 044601 71 GCLVFYGVDAMQMSQHF-----FLRTHKFDRVIYNFPHVGFIFRENSYCQIQL----------NKELVKGFLRNAKLLLK 135 (213)
Q Consensus 71 g~~V~~gVDAt~L~~~~-----~l~~~~FDrIiFNFPH~G~~~~e~~~~~i~~----------n~~Ll~~Ff~Sa~~~L~ 135 (213)
.....-++|++.....- ....-.||||.-+=|+.|-+..+... +|-. -..|=...+.++-++|+
T Consensus 209 ~~~~v~~~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~-~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk 287 (375)
T KOG2198|consen 209 PNLLVTNHDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNP-NIWKEGWKTQRALGLHALQLRILRRGLRLLK 287 (375)
T ss_pred cceeeecccceeccccccccCchhhhhhcceeEEecccCCCcccccCc-hHhhhhhhhhhccCChHHHHHHHHHHHHHhc
Confidence 45566778887776542 22346799999999999964322211 1111 12344567888999998
Q ss_pred cCCCeEEEEeccCCCCCcccHH
Q 044601 136 EENGEIHVTHKEGDPYNKWELV 157 (213)
Q Consensus 136 ~~~G~ihvTl~~~~py~~W~i~ 157 (213)
++|.+.=+-|...|-..=-++
T Consensus 288 -~GG~lVYSTCSLnpieNEaVV 308 (375)
T KOG2198|consen 288 -VGGRLVYSTCSLNPIENEAVV 308 (375)
T ss_pred -CCCEEEEeccCCCchhhHHHH
Confidence 999999998988875443333
No 194
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=52.32 E-value=86 Score=27.50 Aligned_cols=108 Identities=12% Similarity=0.092 Sum_probs=61.8
Q ss_pred CCCCCCeEEEEecCChhH-HHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHH-hCCCEEEEeeeccccCCCcc
Q 044601 11 HYSSKQRILLVGEGDFSF-SLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELE-ERGCLVFYGVDAMQMSQHFF 88 (213)
Q Consensus 11 ~y~~~~~ILlVGEGnFSF-S~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~-~~g~~V~~gVDAt~L~~~~~ 88 (213)
...+.++||=||=+ .-+ ++++|+..+....|++.-.|. +..+ -|..|++..- ...++++.| ||...-....
T Consensus 76 ~~~~ak~iLEiGT~-~GySal~la~al~~~g~v~tiE~~~--~~~~---~Ar~~~~~ag~~~~I~~~~G-~a~e~L~~l~ 148 (247)
T PLN02589 76 KLINAKNTMEIGVY-TGYSLLATALALPEDGKILAMDINR--ENYE---LGLPVIQKAGVAHKIDFREG-PALPVLDQMI 148 (247)
T ss_pred HHhCCCEEEEEeCh-hhHHHHHHHhhCCCCCEEEEEeCCH--HHHH---HHHHHHHHCCCCCceEEEec-cHHHHHHHHH
Confidence 34567899999974 333 355677765555676666653 2222 3555665432 123555555 5544211110
Q ss_pred c---cCCcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEE
Q 044601 89 L---RTHKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHV 143 (213)
Q Consensus 89 l---~~~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihv 143 (213)
- ....||.|..+-- +..-..+|..+.++|+ ++|-|.+
T Consensus 149 ~~~~~~~~fD~iFiDad-----------------K~~Y~~y~~~~l~ll~-~GGviv~ 188 (247)
T PLN02589 149 EDGKYHGTFDFIFVDAD-----------------KDNYINYHKRLIDLVK-VGGVIGY 188 (247)
T ss_pred hccccCCcccEEEecCC-----------------HHHhHHHHHHHHHhcC-CCeEEEE
Confidence 0 1257999988722 2223478888899997 8887654
No 195
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=52.25 E-value=27 Score=29.70 Aligned_cols=108 Identities=19% Similarity=0.155 Sum_probs=63.7
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHh-CCCEEEEeeeccccCCCcccc-
Q 044601 13 SSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEE-RGCLVFYGVDAMQMSQHFFLR- 90 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~-~g~~V~~gVDAt~L~~~~~l~- 90 (213)
.+.++||=||=+-===+++||++++....|++.-.|.+ . +.-|.+|++.--- ..++ +..-||...-....-.
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~--~---~~~A~~~~~~ag~~~~I~-~~~gda~~~l~~l~~~~ 117 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPE--R---AEIARENFRKAGLDDRIE-VIEGDALEVLPELANDG 117 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHH--H---HHHHHHHHHHTTGGGGEE-EEES-HHHHHHHHHHTT
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHH--H---HHHHHHHHHhcCCCCcEE-EEEeccHhhHHHHHhcc
Confidence 45789999998754447778888876667777766642 2 2235555553221 1233 4446776543221111
Q ss_pred -CCcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEE
Q 044601 91 -THKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVT 144 (213)
Q Consensus 91 -~~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvT 144 (213)
...||.|.-+-.... -..+|.-+.++|+ ++|-|.+-
T Consensus 118 ~~~~fD~VFiDa~K~~-----------------y~~y~~~~~~ll~-~ggvii~D 154 (205)
T PF01596_consen 118 EEGQFDFVFIDADKRN-----------------YLEYFEKALPLLR-PGGVIIAD 154 (205)
T ss_dssp TTTSEEEEEEESTGGG-----------------HHHHHHHHHHHEE-EEEEEEEE
T ss_pred CCCceeEEEEcccccc-----------------hhhHHHHHhhhcc-CCeEEEEc
Confidence 357999998764211 1257777788998 88877664
No 196
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=51.75 E-value=78 Score=29.29 Aligned_cols=74 Identities=23% Similarity=0.361 Sum_probs=45.3
Q ss_pred CCCeEEEEecCChhHHHHHHHHh-CCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCC
Q 044601 14 SKQRILLVGEGDFSFSLCLAREF-GFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTH 92 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~ 92 (213)
++++|+++|=|- ..+++|+.+ ..+..|+++..+..+.+ .+.+++|++.|++++.+-.+..+ ..
T Consensus 4 ~~k~v~iiG~g~--~G~~~A~~l~~~G~~V~~~d~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~-------~~ 67 (450)
T PRK14106 4 KGKKVLVVGAGV--SGLALAKFLKKLGAKVILTDEKEEDQL-------KEALEELGELGIELVLGEYPEEF-------LE 67 (450)
T ss_pred CCCEEEEECCCH--HHHHHHHHHHHCCCEEEEEeCCchHHH-------HHHHHHHHhcCCEEEeCCcchhH-------hh
Confidence 468999999887 445666654 34678888766653332 23356778888876654443311 23
Q ss_pred cccEEEEcCCcC
Q 044601 93 KFDRVIYNFPHV 104 (213)
Q Consensus 93 ~FDrIiFNFPH~ 104 (213)
.+|.||.+ |+.
T Consensus 68 ~~d~vv~~-~g~ 78 (450)
T PRK14106 68 GVDLVVVS-PGV 78 (450)
T ss_pred cCCEEEEC-CCC
Confidence 46777764 444
No 197
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=51.42 E-value=1.1e+02 Score=26.56 Aligned_cols=97 Identities=15% Similarity=0.201 Sum_probs=53.9
Q ss_pred CCCCCCeEEEEec-CChh-HHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeecc-ccCCC-
Q 044601 11 HYSSKQRILLVGE-GDFS-FSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAM-QMSQH- 86 (213)
Q Consensus 11 ~y~~~~~ILlVGE-GnFS-FS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt-~L~~~- 86 (213)
...++++||+.|- |-.- ++..||+..| ..+++|+-.. +..+.++++|+...+.-+-. .+.+.
T Consensus 135 ~~~~g~~VLI~ga~g~vG~~aiqlAk~~G--~~Vi~~~~s~------------~~~~~~~~lGa~~vi~~~~~~~~~~~~ 200 (325)
T TIGR02825 135 GVKGGETVMVNAAAGAVGSVVGQIAKLKG--CKVVGAAGSD------------EKVAYLKKLGFDVAFNYKTVKSLEETL 200 (325)
T ss_pred CCCCCCEEEEeCCccHHHHHHHHHHHHcC--CEEEEEeCCH------------HHHHHHHHcCCCEEEeccccccHHHHH
Confidence 4567899999993 5444 4555677775 4688775431 23566677887544432211 11110
Q ss_pred ccccCCcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEE
Q 044601 87 FFLRTHKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHV 143 (213)
Q Consensus 87 ~~l~~~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihv 143 (213)
.......+|.|+ + .+|+ .-+..+.++|+ ++|++.+
T Consensus 201 ~~~~~~gvdvv~-d--~~G~------------------~~~~~~~~~l~-~~G~iv~ 235 (325)
T TIGR02825 201 KKASPDGYDCYF-D--NVGG------------------EFSNTVIGQMK-KFGRIAI 235 (325)
T ss_pred HHhCCCCeEEEE-E--CCCH------------------HHHHHHHHHhC-cCcEEEE
Confidence 111234588665 3 4453 11344556777 8888764
No 198
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=51.34 E-value=37 Score=26.05 Aligned_cols=57 Identities=23% Similarity=0.402 Sum_probs=38.9
Q ss_pred eEEEEecCChhHHHHHHHHh----CCCCeEEEeccC---CHHHHHhhcchHHHHHHHHHh-CCCEEEEee
Q 044601 17 RILLVGEGDFSFSLCLAREF----GFAHNMVATCLD---TQETIANKYSNAVDNVRELEE-RGCLVFYGV 78 (213)
Q Consensus 17 ~ILlVGEGnFSFS~aLa~~~----~~~~~l~ATs~d---s~~~l~~kY~~a~~ni~~L~~-~g~~V~~gV 78 (213)
+||+++=|+ ||.++.... |...+|.|-++. +.+++.++. .+-++++.+ .|+.|+.++
T Consensus 3 ~ili~sHG~--~A~gl~~s~~~i~G~~~~i~~i~~~~~~~~~~~~~~l---~~~i~~~~~~~~vivltDl 67 (116)
T TIGR00824 3 AIIISGHGQ--AAIALLKSAEMIFGEQNNVGAVPFVPGENAETLQEKY---NAALADLDTEEEVLFLVDI 67 (116)
T ss_pred EEEEEecHH--HHHHHHHHHHHHcCCcCCeEEEEcCCCcCHHHHHHHH---HHHHHhcCCCCCEEEEEeC
Confidence 699999999 788886643 555678887775 466677754 444666643 467777555
No 199
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=50.65 E-value=28 Score=26.32 Aligned_cols=56 Identities=25% Similarity=0.348 Sum_probs=35.0
Q ss_pred eEEEEecCChhHHHHHHHHh----CC-CCeEEEeccCC---HHHHHhhcchHHHHHHHHH-hCCCEEEEe
Q 044601 17 RILLVGEGDFSFSLCLAREF----GF-AHNMVATCLDT---QETIANKYSNAVDNVRELE-ERGCLVFYG 77 (213)
Q Consensus 17 ~ILlVGEGnFSFS~aLa~~~----~~-~~~l~ATs~ds---~~~l~~kY~~a~~ni~~L~-~~g~~V~~g 77 (213)
.|++++-| +||.+++... |. ..++.|-++.. .+++.++ ..+-++.+. ..|+.|+.+
T Consensus 1 giii~sHG--~~A~g~~~~~~~i~G~~~~~i~~~~~~~~~~~~~~~~~---l~~~i~~~~~~~~vlil~D 65 (116)
T PF03610_consen 1 GIIIASHG--SLAEGLLESAEMILGEDQDNIEAVDLYPDESIEDFEEK---LEEAIEELDEGDGVLILTD 65 (116)
T ss_dssp EEEEEEET--THHHHHHHHHHHHHTSTCSSEEEEEETTTSCHHHHHHH---HHHHHHHCCTTSEEEEEES
T ss_pred CEEEEECc--HHHHHHHHHHHHHcCCCcccEEEEECcCCCCHHHHHHH---HHHHHHhccCCCcEEEEee
Confidence 48999999 8888887653 55 55888888764 4445444 333445553 335555533
No 200
>PRK07454 short chain dehydrogenase; Provisional
Probab=50.60 E-value=61 Score=26.71 Aligned_cols=79 Identities=18% Similarity=0.136 Sum_probs=43.8
Q ss_pred CCCCeEEEEecCChhHHHHHHHHh-CCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCE-EEEeeeccccCCCccc-
Q 044601 13 SSKQRILLVGEGDFSFSLCLAREF-GFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCL-VFYGVDAMQMSQHFFL- 89 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~aLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~-V~~gVDAt~L~~~~~l- 89 (213)
++.+++|+.|= .=-...+|++.+ ..+..|++++.+.. .+ ....+.+++.+.. ..+.+|+++......+
T Consensus 4 ~~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~-~~-------~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 74 (241)
T PRK07454 4 NSMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQD-AL-------EALAAELRSTGVKAAAYSIDLSNPEAIAPGI 74 (241)
T ss_pred CCCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHH-HH-------HHHHHHHHhCCCcEEEEEccCCCHHHHHHHH
Confidence 45678999984 224455555544 23568888887632 11 1223334444433 3567899887643221
Q ss_pred -----cCCcccEEEEc
Q 044601 90 -----RTHKFDRVIYN 100 (213)
Q Consensus 90 -----~~~~FDrIiFN 100 (213)
+....|.||.|
T Consensus 75 ~~~~~~~~~id~lv~~ 90 (241)
T PRK07454 75 AELLEQFGCPDVLINN 90 (241)
T ss_pred HHHHHHcCCCCEEEEC
Confidence 12457888765
No 201
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=50.25 E-value=69 Score=28.81 Aligned_cols=85 Identities=25% Similarity=0.451 Sum_probs=52.5
Q ss_pred CEEEEeeeccccCCCccccCCcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCe-EEEEeccCCC
Q 044601 72 CLVFYGVDAMQMSQHFFLRTHKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGE-IHVTHKEGDP 150 (213)
Q Consensus 72 ~~V~~gVDAt~L~~~~~l~~~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~-ihvTl~~~~p 150 (213)
+.|+.| ||-.+-+.+ ....||.||-+=|-....+ + .--..|++--..+|+ ++|+ +|-+=..|+-
T Consensus 187 i~iilG-D~~e~V~~~--~D~sfDaIiHDPPRfS~Ag-e----------LYseefY~El~RiLk-rgGrlFHYvG~Pg~r 251 (287)
T COG2521 187 IKIILG-DAYEVVKDF--DDESFDAIIHDPPRFSLAG-E----------LYSEEFYRELYRILK-RGGRLFHYVGNPGKR 251 (287)
T ss_pred cEEecc-cHHHHHhcC--CccccceEeeCCCccchhh-h----------HhHHHHHHHHHHHcC-cCCcEEEEeCCCCcc
Confidence 444433 444443333 3678999999988776432 1 112356666678998 8887 6777666665
Q ss_pred CCcccHHh----HHHHhCcEEEEEe
Q 044601 151 YNKWELVK----KAEKIGLTLQEVV 171 (213)
Q Consensus 151 y~~W~i~~----lA~~~gl~l~~~~ 171 (213)
|..=|+.+ .-++.||..++++
T Consensus 252 yrG~d~~~gVa~RLr~vGF~~v~~~ 276 (287)
T COG2521 252 YRGLDLPKGVAERLRRVGFEVVKKV 276 (287)
T ss_pred cccCChhHHHHHHHHhcCceeeeee
Confidence 66555553 4456788766553
No 202
>PRK12939 short chain dehydrogenase; Provisional
Probab=49.64 E-value=57 Score=26.80 Aligned_cols=79 Identities=13% Similarity=0.074 Sum_probs=44.8
Q ss_pred CCCeEEEEecCChhHHHHHHHHhC-CCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEE-EEeeeccccCCCccc--
Q 044601 14 SKQRILLVGEGDFSFSLCLAREFG-FAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLV-FYGVDAMQMSQHFFL-- 89 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V-~~gVDAt~L~~~~~l-- 89 (213)
++++||+.|= +=--..+|++.+. .+.+|++++.+. +.+ ....+.|+..+..+ .+-+|.++......+
T Consensus 6 ~~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~-~~~-------~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 76 (250)
T PRK12939 6 AGKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLA-AEA-------RELAAALEAAGGRAHAIAADLADPASVQRFFD 76 (250)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCH-HHH-------HHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence 4578999884 3344555555442 356888885542 222 22234555555443 567888876543221
Q ss_pred ----cCCcccEEEEcC
Q 044601 90 ----RTHKFDRVIYNF 101 (213)
Q Consensus 90 ----~~~~FDrIiFNF 101 (213)
...+.|.||.|-
T Consensus 77 ~~~~~~~~id~vi~~a 92 (250)
T PRK12939 77 AAAAALGGLDGLVNNA 92 (250)
T ss_pred HHHHHcCCCCEEEECC
Confidence 114689988874
No 203
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=49.63 E-value=60 Score=29.05 Aligned_cols=65 Identities=25% Similarity=0.295 Sum_probs=43.4
Q ss_pred CCeEEEEecCChhHHHHHHHHhCC-CCeEEEeccCC-HHHHHhhc--------chHHHHHHHHHhCCCEEEEeeecccc
Q 044601 15 KQRILLVGEGDFSFSLCLAREFGF-AHNMVATCLDT-QETIANKY--------SNAVDNVRELEERGCLVFYGVDAMQM 83 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aLa~~~~~-~~~l~ATs~ds-~~~l~~kY--------~~a~~ni~~L~~~g~~V~~gVDAt~L 83 (213)
.++||++| .=|=|++|++.+.. +.-++.||.-+ -..+...+ .+++.-.+.|++.++.++ ||||--
T Consensus 2 ~~~ilvlG--GT~Dar~la~~L~~~~~~~~~ss~t~~g~~l~~~~~~~~~~G~l~~e~l~~~l~e~~i~ll--IDATHP 76 (257)
T COG2099 2 MMRILLLG--GTSDARALAKKLAAAPVDIILSSLTGYGAKLAEQIGPVRVGGFLGAEGLAAFLREEGIDLL--IDATHP 76 (257)
T ss_pred CceEEEEe--ccHHHHHHHHHhhccCccEEEEEcccccccchhccCCeeecCcCCHHHHHHHHHHcCCCEE--EECCCh
Confidence 57888886 45678999998852 22444444443 23444433 346777899999999888 899853
No 204
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=49.22 E-value=1.5e+02 Score=24.51 Aligned_cols=120 Identities=15% Similarity=0.042 Sum_probs=63.7
Q ss_pred cccCCCCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCc
Q 044601 8 WSNHYSSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHF 87 (213)
Q Consensus 8 ~~~~y~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~ 87 (213)
++.++-.+.++|=++=|.=+|++.++.. + +..+ +..|......+ .+..|++.+.-.+-.-++.-|+.+.-+..
T Consensus 43 ~l~~~~~g~~vLDLfaGsG~lglea~sr-g-a~~v--~~vE~~~~a~~---~~~~N~~~~~~~~~~~~~~~D~~~~l~~~ 115 (189)
T TIGR00095 43 ILRPEIQGAHLLDVFAGSGLLGEEALSR-G-AKVA--FLEEDDRKANQ---TLKENLALLKSGEQAEVVRNSALRALKFL 115 (189)
T ss_pred HHHHhcCCCEEEEecCCCcHHHHHHHhC-C-CCEE--EEEeCCHHHHH---HHHHHHHHhCCcccEEEEehhHHHHHHHh
Confidence 3444456778877777766777777655 3 3344 44453332222 35677777653322235677775432211
Q ss_pred cccCCcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccC
Q 044601 88 FLRTHKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEG 148 (213)
Q Consensus 88 ~l~~~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~ 148 (213)
. ....+|-|||+=|--+.. .-..++..... ..+|. ++|-|.+.+...
T Consensus 116 ~-~~~~~~dvv~~DPPy~~~----------~~~~~l~~l~~--~~~l~-~~~iiv~E~~~~ 162 (189)
T TIGR00095 116 A-KKPTFDNVIYLDPPFFNG----------ALQALLELCEN--NWILE-DTVLIVVEEDRE 162 (189)
T ss_pred h-ccCCCceEEEECcCCCCC----------cHHHHHHHHHH--CCCCC-CCeEEEEEecCC
Confidence 1 123344455555554431 23445544332 46786 888888887654
No 205
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=48.66 E-value=89 Score=26.95 Aligned_cols=69 Identities=13% Similarity=0.172 Sum_probs=38.9
Q ss_pred cCCCCCCeEEEEecCChhHH-HHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCcc
Q 044601 10 NHYSSKQRILLVGEGDFSFS-LCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFF 88 (213)
Q Consensus 10 ~~y~~~~~ILlVGEGnFSFS-~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~ 88 (213)
....++.+||+.|.|-..-+ ..+|+..| ..+++|+-.+ ++.+.|++.|+...+..+..
T Consensus 151 ~~~~~g~~vlV~g~g~vg~~~~q~a~~~G--~~vi~~~~~~------------~~~~~~~~~g~~~~~~~~~~------- 209 (319)
T cd08242 151 VPITPGDKVAVLGDGKLGLLIAQVLALTG--PDVVLVGRHS------------EKLALARRLGVETVLPDEAE------- 209 (319)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCH------------HHHHHHHHcCCcEEeCcccc-------
Confidence 34567899999997744332 22355554 5577775432 23455566777654444221
Q ss_pred ccCCcccEEEE
Q 044601 89 LRTHKFDRVIY 99 (213)
Q Consensus 89 l~~~~FDrIiF 99 (213)
.....+|.|+=
T Consensus 210 ~~~~~~d~vid 220 (319)
T cd08242 210 SEGGGFDVVVE 220 (319)
T ss_pred ccCCCCCEEEE
Confidence 12355887764
No 206
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=48.35 E-value=23 Score=28.86 Aligned_cols=37 Identities=24% Similarity=0.355 Sum_probs=24.4
Q ss_pred CCCeEEEEecCChhHH--HHHHHHhCCCCeEEEeccCCH
Q 044601 14 SKQRILLVGEGDFSFS--LCLAREFGFAHNMVATCLDTQ 50 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS--~aLa~~~~~~~~l~ATs~ds~ 50 (213)
+...|.++|||.|-++ .+|..+.....+|+--.+|..
T Consensus 69 ~~~Vv~i~GDG~f~~~g~~eL~ta~~~~l~i~vvV~nN~ 107 (178)
T cd02008 69 DKKVVAVIGDSTFFHSGILGLINAVYNKANITVVILDNR 107 (178)
T ss_pred CCCEEEEecChHHhhccHHHHHHHHHcCCCEEEEEECCc
Confidence 3567889999999875 455443323556777777753
No 207
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=48.20 E-value=34 Score=31.59 Aligned_cols=74 Identities=22% Similarity=0.233 Sum_probs=39.4
Q ss_pred CCCeEEEEecCChhHHHHHHHHhC-CCCeEEEeccCCHHHHHhhcchHHHHHHHHHh--CCCEEEEeeeccccCCCcccc
Q 044601 14 SKQRILLVGEGDFSFSLCLAREFG-FAHNMVATCLDTQETIANKYSNAVDNVRELEE--RGCLVFYGVDAMQMSQHFFLR 90 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~--~g~~V~~gVDAt~L~~~~~l~ 90 (213)
+.++||++|-|.+..++ ++.+. .+..+++-..|.+ .++.|++ .++.+++| |+++...-....
T Consensus 230 ~~~~iiIiG~G~~g~~l--~~~L~~~~~~v~vid~~~~------------~~~~~~~~~~~~~~i~g-d~~~~~~L~~~~ 294 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYL--AKLLEKEGYSVKLIERDPE------------RAEELAEELPNTLVLHG-DGTDQELLEEEG 294 (453)
T ss_pred CCCEEEEECCCHHHHHH--HHHHHhCCCeEEEEECCHH------------HHHHHHHHCCCCeEEEC-CCCCHHHHHhcC
Confidence 36889999999887774 44432 2455655543321 1222332 25556665 666554322222
Q ss_pred CCcccEEEEcCC
Q 044601 91 THKFDRVIYNFP 102 (213)
Q Consensus 91 ~~~FDrIiFNFP 102 (213)
-...|.||--.|
T Consensus 295 ~~~a~~vi~~~~ 306 (453)
T PRK09496 295 IDEADAFIALTN 306 (453)
T ss_pred CccCCEEEECCC
Confidence 345666665444
No 208
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=47.25 E-value=1e+02 Score=25.79 Aligned_cols=80 Identities=20% Similarity=0.209 Sum_probs=46.0
Q ss_pred CCCeEEEEecCChhHHHHHHHHhC-CCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEE-EEeeeccccCCCccc--
Q 044601 14 SKQRILLVGEGDFSFSLCLAREFG-FAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLV-FYGVDAMQMSQHFFL-- 89 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V-~~gVDAt~L~~~~~l-- 89 (213)
+++++|++|=+. ..-.++++.+. .+..++.++..+.+. .....+.|+..|..+ .+.+|.++..+...+
T Consensus 6 ~~k~~lItGa~~-gIG~~ia~~l~~~G~~vvi~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~ 77 (261)
T PRK08936 6 EGKVVVITGGST-GLGRAMAVRFGKEKAKVVINYRSDEEE-------ANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQ 77 (261)
T ss_pred CCCEEEEeCCCC-hHHHHHHHHHHHCCCEEEEEeCCCHHH-------HHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHH
Confidence 357888888655 33444544431 245777766644322 233455666667655 567898876643221
Q ss_pred ----cCCcccEEEEcC
Q 044601 90 ----RTHKFDRVIYNF 101 (213)
Q Consensus 90 ----~~~~FDrIiFNF 101 (213)
...+.|.||.|-
T Consensus 78 ~~~~~~g~id~lv~~a 93 (261)
T PRK08936 78 TAVKEFGTLDVMINNA 93 (261)
T ss_pred HHHHHcCCCCEEEECC
Confidence 124688888774
No 209
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=47.21 E-value=37 Score=25.25 Aligned_cols=87 Identities=24% Similarity=0.244 Sum_probs=53.0
Q ss_pred hHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCc-ccc-CCcccEEEEcCCcC
Q 044601 27 SFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHF-FLR-THKFDRVIYNFPHV 104 (213)
Q Consensus 27 SFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~-~l~-~~~FDrIiFNFPH~ 104 (213)
.++..||++.| .+|++|+.+. +.++.++++|+.....-+..++.+.. .+. ...+|.||= + +
T Consensus 4 ~~a~q~ak~~G--~~vi~~~~~~------------~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid-~--~ 66 (130)
T PF00107_consen 4 LMAIQLAKAMG--AKVIATDRSE------------EKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVID-C--V 66 (130)
T ss_dssp HHHHHHHHHTT--SEEEEEESSH------------HHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEE-S--S
T ss_pred HHHHHHHHHcC--CEEEEEECCH------------HHHHHHHhhcccccccccccccccccccccccccceEEEE-e--c
Confidence 35677888887 7999998763 22677888997666555554333221 111 246887654 3 3
Q ss_pred CCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccC
Q 044601 105 GFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEG 148 (213)
Q Consensus 105 G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~ 148 (213)
|.. .-+..+-.+|+ ++|.+.+.=..+
T Consensus 67 g~~-----------------~~~~~~~~~l~-~~G~~v~vg~~~ 92 (130)
T PF00107_consen 67 GSG-----------------DTLQEAIKLLR-PGGRIVVVGVYG 92 (130)
T ss_dssp SSH-----------------HHHHHHHHHEE-EEEEEEEESSTS
T ss_pred CcH-----------------HHHHHHHHHhc-cCCEEEEEEccC
Confidence 311 23556778897 889876654433
No 210
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=46.45 E-value=69 Score=29.54 Aligned_cols=30 Identities=17% Similarity=0.409 Sum_probs=18.2
Q ss_pred CeEEEEecCChhHHHHHHHHhC-CCCeEEEecc
Q 044601 16 QRILLVGEGDFSFSLCLAREFG-FAHNMVATCL 47 (213)
Q Consensus 16 ~~ILlVGEGnFSFS~aLa~~~~-~~~~l~ATs~ 47 (213)
++|+++|-|.+..+++- .+. .+..++.-..
T Consensus 1 m~viIiG~G~ig~~~a~--~L~~~g~~v~vid~ 31 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAE--NLSGENNDVTVIDT 31 (453)
T ss_pred CEEEEECCCHHHHHHHH--HHHhCCCcEEEEEC
Confidence 47999999977666554 321 2455554443
No 211
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=46.42 E-value=63 Score=27.22 Aligned_cols=89 Identities=13% Similarity=0.126 Sum_probs=44.4
Q ss_pred CCCeEEEEecCCh-hHHHHHHHHhC-CCCeEEEecc---CCHHHHHhhcchHHHHHHHHHhCCCEE-EEeeeccccCCCc
Q 044601 14 SKQRILLVGEGDF-SFSLCLAREFG-FAHNMVATCL---DTQETIANKYSNAVDNVRELEERGCLV-FYGVDAMQMSQHF 87 (213)
Q Consensus 14 ~~~~ILlVGEGnF-SFS~aLa~~~~-~~~~l~ATs~---ds~~~l~~kY~~a~~ni~~L~~~g~~V-~~gVDAt~L~~~~ 87 (213)
++++||+.|=..+ +--.++|+++. .+..|+.++. +........-+....-.+.+++.|.++ .+.+|.++..+..
T Consensus 5 ~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~i~ 84 (256)
T PRK12859 5 KNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQNDAPK 84 (256)
T ss_pred CCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHH
Confidence 3578999986542 33444444331 2446666542 211000000001112234566677765 5678888765432
Q ss_pred cc------cCCcccEEEEcCC
Q 044601 88 FL------RTHKFDRVIYNFP 102 (213)
Q Consensus 88 ~l------~~~~FDrIiFNFP 102 (213)
.+ .....|.||.|--
T Consensus 85 ~~~~~~~~~~g~id~li~~ag 105 (256)
T PRK12859 85 ELLNKVTEQLGYPHILVNNAA 105 (256)
T ss_pred HHHHHHHHHcCCCcEEEECCC
Confidence 21 1245799998853
No 212
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=45.81 E-value=1.8e+02 Score=24.40 Aligned_cols=78 Identities=14% Similarity=0.189 Sum_probs=42.9
Q ss_pred CCCeEEEEecCC-hhHHHHHHHHh-CCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccc--
Q 044601 14 SKQRILLVGEGD-FSFSLCLAREF-GFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFL-- 89 (213)
Q Consensus 14 ~~~~ILlVGEGn-FSFS~aLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l-- 89 (213)
+++.+|+.|=++ =.--+++|+++ ..+.+|+.++.+. .+. +.++++.... ...+.+|.++..+...+
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~--~~~-------~~~~~~~~~~-~~~~~~Dl~~~~~v~~~~~ 75 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND--RMK-------KSLQKLVDEE-DLLVECDVASDESIERAFA 75 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch--HHH-------HHHHhhccCc-eeEEeCCCCCHHHHHHHHH
Confidence 467899999763 22233333332 1356888886652 221 2234443322 34567898876543221
Q ss_pred ----cCCcccEEEEcC
Q 044601 90 ----RTHKFDRVIYNF 101 (213)
Q Consensus 90 ----~~~~FDrIiFNF 101 (213)
+..+.|.+|.|-
T Consensus 76 ~~~~~~g~iD~lv~nA 91 (252)
T PRK06079 76 TIKERVGKIDGIVHAI 91 (252)
T ss_pred HHHHHhCCCCEEEEcc
Confidence 135789999884
No 213
>PRK13530 arsenate reductase; Provisional
Probab=45.80 E-value=81 Score=24.69 Aligned_cols=54 Identities=9% Similarity=0.138 Sum_probs=34.7
Q ss_pred CCeEEEEecCChh---HHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEE
Q 044601 15 KQRILLVGEGDFS---FSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLV 74 (213)
Q Consensus 15 ~~~ILlVGEGnFS---FS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V 74 (213)
.++||+|--||-- .|-+|++++.. ..+.+.|--.+. .+=...-++.|++.|+.+
T Consensus 3 ~~~vLFvC~~N~cRS~mAEal~~~~~~-~~~~v~SAG~~~-----~~~~~~a~~~l~e~Gi~~ 59 (133)
T PRK13530 3 KKTIYFLCTGNSCRSQMAEGWGKQYLG-DKWNVYSAGIEA-----HGVNPNAIKAMKEVGIDI 59 (133)
T ss_pred CCEEEEEcCCchhHHHHHHHHHHHhcC-CCEEEECCCCCC-----CCCCHHHHHHHHHcCCCc
Confidence 5799999999999 99999988742 345443333221 111134467778777654
No 214
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=45.42 E-value=91 Score=27.69 Aligned_cols=94 Identities=20% Similarity=0.238 Sum_probs=55.5
Q ss_pred CCCCeEEEEecCChh-HHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccc--cCCCccc
Q 044601 13 SSKQRILLVGEGDFS-FSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQ--MSQHFFL 89 (213)
Q Consensus 13 ~~~~~ILlVGEGnFS-FS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~--L~~~~~l 89 (213)
.++++||++|=|... ++..+|+..+ ..+++++-... ....++.++++|+.+ ||..+ +.+ ..
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G--~~vi~~~~~~~---------~~~~~~~~~~~Ga~~---v~~~~~~~~~--~~ 234 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRG--FEVYVLNRRDP---------PDPKADIVEELGATY---VNSSKTPVAE--VK 234 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCC---------CHHHHHHHHHcCCEE---ecCCccchhh--hh
Confidence 468999999988765 5556678775 36888776311 113456677889874 33322 111 01
Q ss_pred cCCcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEE
Q 044601 90 RTHKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHV 143 (213)
Q Consensus 90 ~~~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihv 143 (213)
....+|.||=- +|.. ..+..+..+|+ ++|.+.+
T Consensus 235 ~~~~~d~vid~---~g~~-----------------~~~~~~~~~l~-~~G~~v~ 267 (355)
T cd08230 235 LVGEFDLIIEA---TGVP-----------------PLAFEALPALA-PNGVVIL 267 (355)
T ss_pred hcCCCCEEEEC---cCCH-----------------HHHHHHHHHcc-CCcEEEE
Confidence 12457865542 3321 23556677887 8998654
No 215
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=45.36 E-value=32 Score=33.50 Aligned_cols=37 Identities=14% Similarity=0.149 Sum_probs=24.7
Q ss_pred CCCCCCeEEEEecCChhHHHH-HHH-HhCCCCeEEEecc
Q 044601 11 HYSSKQRILLVGEGDFSFSLC-LAR-EFGFAHNMVATCL 47 (213)
Q Consensus 11 ~y~~~~~ILlVGEGnFSFS~a-La~-~~~~~~~l~ATs~ 47 (213)
.+-.++|+.+.|||+.+.+++ +.. .+|-....++|..
T Consensus 324 ~~L~GKrvai~~gg~~~~~~~~~l~~ElGmevv~~~t~~ 362 (513)
T TIGR01861 324 ERLKGKKVCLWPGGSKLWHWAHVIEEEMGLKVVSVYSKF 362 (513)
T ss_pred HhcCCCEEEEECCchHHHHHHHHHHHhCCCEEEEEeccC
Confidence 455689999999999888777 344 5764333333444
No 216
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=44.55 E-value=62 Score=24.70 Aligned_cols=57 Identities=21% Similarity=0.356 Sum_probs=37.0
Q ss_pred eEEEEecCChhHHHHHHHHh----CCCCeEEEeccC---CHHHHHhhcchHHHHHHHHHh-CCCEEEEee
Q 044601 17 RILLVGEGDFSFSLCLAREF----GFAHNMVATCLD---TQETIANKYSNAVDNVRELEE-RGCLVFYGV 78 (213)
Q Consensus 17 ~ILlVGEGnFSFS~aLa~~~----~~~~~l~ATs~d---s~~~l~~kY~~a~~ni~~L~~-~g~~V~~gV 78 (213)
+||+++=| +||.+++... |...++.|-++. +.+++.++ ..+-++.+.+ .|+.|+.++
T Consensus 2 ~ili~sHG--~~A~gi~~~~~~i~G~~~~i~~~~~~~~~~~~~~~~~---i~~~i~~~~~~~~viil~Dl 66 (122)
T cd00006 2 GIIIATHG--GFASGLLNSAEMILGEQENVEAIDFPPGESPDDLLEK---IKAALAELDSGEGVLILTDL 66 (122)
T ss_pred eEEEEcCH--HHHHHHHHHHHHhcCCCCCeEEEEeCCCCCHHHHHHH---HHHHHHHhCCCCcEEEEEeC
Confidence 68999999 8999997653 445577776665 44445543 3444555543 467777665
No 217
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=44.31 E-value=2e+02 Score=24.57 Aligned_cols=76 Identities=18% Similarity=0.238 Sum_probs=42.9
Q ss_pred CCCeEEEEecC---ChhH--HHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHH-HhCCCEEEEeeeccccCCCc
Q 044601 14 SKQRILLVGEG---DFSF--SLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVREL-EERGCLVFYGVDAMQMSQHF 87 (213)
Q Consensus 14 ~~~~ILlVGEG---nFSF--S~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L-~~~g~~V~~gVDAt~L~~~~ 87 (213)
+++.+|+.|=+ ..-. +.+|+++ +.+|+.+..+. +..+ .++.| ++.|..+.+.+|+++.....
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~---Ga~V~~~~r~~--~~~~-------~~~~~~~~~g~~~~~~~Dv~d~~~v~ 73 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQ---GAELAFTYQGE--ALGK-------RVKPLAESLGSDFVLPCDVEDIASVD 73 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhC---CCEEEEecCch--HHHH-------HHHHHHHhcCCceEEeCCCCCHHHHH
Confidence 46789999965 4443 4444432 56777765432 1111 12333 23354466788999876543
Q ss_pred cc------cCCcccEEEEcC
Q 044601 88 FL------RTHKFDRVIYNF 101 (213)
Q Consensus 88 ~l------~~~~FDrIiFNF 101 (213)
.+ ...+.|.+|.|=
T Consensus 74 ~~~~~~~~~~g~iD~lVnnA 93 (271)
T PRK06505 74 AVFEALEKKWGKLDFVVHAI 93 (271)
T ss_pred HHHHHHHHHhCCCCEEEECC
Confidence 22 125789888773
No 218
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=44.26 E-value=91 Score=30.14 Aligned_cols=73 Identities=22% Similarity=0.227 Sum_probs=47.6
Q ss_pred CCeEEEEecCChhHHHHHHHHhC-CCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCCc
Q 044601 15 KQRILLVGEGDFSFSLCLAREFG-FAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTHK 93 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~~ 93 (213)
+++|+++|=|.+... +++.+. .+..+++--.|. +.++.+++.|..+++| ||++-+--....-.+
T Consensus 417 ~~hiiI~G~G~~G~~--la~~L~~~g~~vvvId~d~------------~~~~~~~~~g~~~i~G-D~~~~~~L~~a~i~~ 481 (558)
T PRK10669 417 CNHALLVGYGRVGSL--LGEKLLAAGIPLVVIETSR------------TRVDELRERGIRAVLG-NAANEEIMQLAHLDC 481 (558)
T ss_pred CCCEEEECCChHHHH--HHHHHHHCCCCEEEEECCH------------HHHHHHHHCCCeEEEc-CCCCHHHHHhcCccc
Confidence 589999999987765 555442 245665544331 2366777789999999 999854332223456
Q ss_pred ccEEEEcCC
Q 044601 94 FDRVIYNFP 102 (213)
Q Consensus 94 FDrIiFNFP 102 (213)
.|.|+-.-|
T Consensus 482 a~~viv~~~ 490 (558)
T PRK10669 482 ARWLLLTIP 490 (558)
T ss_pred cCEEEEEcC
Confidence 787776544
No 219
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=44.25 E-value=1.1e+02 Score=25.49 Aligned_cols=80 Identities=15% Similarity=0.192 Sum_probs=45.2
Q ss_pred CCCeEEEEecCChhHHHHHHHHh-CCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEE-EEeeeccccCCCccc--
Q 044601 14 SKQRILLVGEGDFSFSLCLAREF-GFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLV-FYGVDAMQMSQHFFL-- 89 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V-~~gVDAt~L~~~~~l-- 89 (213)
+++++|+.|=+. ....++++++ ..+.+|+.+..+.. . .....++|+..+..+ .+.+|.++......+
T Consensus 8 ~~k~~lItGas~-giG~~ia~~L~~~G~~vvl~~r~~~-~-------~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~ 78 (254)
T PRK08085 8 AGKNILITGSAQ-GIGFLLATGLAEYGAEIIINDITAE-R-------AELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIE 78 (254)
T ss_pred CCCEEEEECCCC-hHHHHHHHHHHHcCCEEEEEcCCHH-H-------HHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHH
Confidence 357889998544 3444444433 12568888766532 1 223355666656543 567788776532211
Q ss_pred ----cCCcccEEEEcCC
Q 044601 90 ----RTHKFDRVIYNFP 102 (213)
Q Consensus 90 ----~~~~FDrIiFNFP 102 (213)
....+|.||.|=-
T Consensus 79 ~~~~~~~~id~vi~~ag 95 (254)
T PRK08085 79 HIEKDIGPIDVLINNAG 95 (254)
T ss_pred HHHHhcCCCCEEEECCC
Confidence 1246899998753
No 220
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=44.12 E-value=23 Score=29.53 Aligned_cols=33 Identities=21% Similarity=0.383 Sum_probs=23.5
Q ss_pred CCeEEEEecCChhHHH-HH--HHHhCCCCeEEEeccCC
Q 044601 15 KQRILLVGEGDFSFSL-CL--AREFGFAHNMVATCLDT 49 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~-aL--a~~~~~~~~l~ATs~ds 49 (213)
...|.++|||.|-++. .| +.++ ...|+--.++.
T Consensus 76 ~~vv~i~GDG~f~m~~~eL~Ta~~~--~lpviivV~NN 111 (202)
T cd02006 76 RQVVALSGDYDFQFMIEELAVGAQH--RIPYIHVLVNN 111 (202)
T ss_pred CeEEEEEeChHhhccHHHHHHHHHh--CCCeEEEEEeC
Confidence 4568899999999985 34 4454 45677777775
No 221
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=43.98 E-value=2.4e+02 Score=25.72 Aligned_cols=113 Identities=21% Similarity=0.219 Sum_probs=64.5
Q ss_pred cccCCCCCCeEEEEecCChhHHHHHHHHhCCC---CeEEEeccC-CHHHHHhhcchHHHHHHHHHhCCCEEEEeeecccc
Q 044601 8 WSNHYSSKQRILLVGEGDFSFSLCLAREFGFA---HNMVATCLD-TQETIANKYSNAVDNVRELEERGCLVFYGVDAMQM 83 (213)
Q Consensus 8 ~~~~y~~~~~ILlVGEGnFSFS~aLa~~~~~~---~~l~ATs~d-s~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L 83 (213)
|+.+... +++|=|+=|-=--+.-+.++..+. .+=-.|..| +.+.|..-=..+. -.-|++.++.+.-+-||.+|
T Consensus 95 ~L~p~~~-m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~--~~~l~~~~~~~w~~~dAE~L 171 (296)
T KOG1540|consen 95 KLGPGKG-MKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAK--KRPLKASSRVEWVEGDAEDL 171 (296)
T ss_pred ccCCCCC-CeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHh--hcCCCcCCceEEEeCCcccC
Confidence 3444333 888877544333333455554321 112234455 4444443111121 14566666677777799999
Q ss_pred CCCccccCCcccEEEE-----cCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEecc
Q 044601 84 SQHFFLRTHKFDRVIY-----NFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKE 147 (213)
Q Consensus 84 ~~~~~l~~~~FDrIiF-----NFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~ 147 (213)
. + ....||+..- |+||.- +=++-|..+|+ |+|++.+-...
T Consensus 172 p--F--dd~s~D~yTiafGIRN~th~~-------------------k~l~EAYRVLK-pGGrf~cLeFs 216 (296)
T KOG1540|consen 172 P--F--DDDSFDAYTIAFGIRNVTHIQ-------------------KALREAYRVLK-PGGRFSCLEFS 216 (296)
T ss_pred C--C--CCCcceeEEEecceecCCCHH-------------------HHHHHHHHhcC-CCcEEEEEEcc
Confidence 7 4 3788998743 556554 23466889998 99998766553
No 222
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=43.95 E-value=2.1e+02 Score=25.28 Aligned_cols=107 Identities=23% Similarity=0.295 Sum_probs=67.2
Q ss_pred CCCCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHh---------CCCEEEEeeecc
Q 044601 11 HYSSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEE---------RGCLVFYGVDAM 81 (213)
Q Consensus 11 ~y~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~---------~g~~V~~gVDAt 81 (213)
|-.++.+.|=||-|-==-|.+.++..+ +.-..+--.|-..+|.+ .++.||+.--. .|-..++-=|.-
T Consensus 79 ~L~pG~s~LdvGsGSGYLt~~~~~mvg-~~g~~~~GIEh~~eLVe---~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr 154 (237)
T KOG1661|consen 79 HLQPGASFLDVGSGSGYLTACFARMVG-ATGGNVHGIEHIPELVE---YSKKNLDKDITTSESSSKLKRGELSIVVGDGR 154 (237)
T ss_pred hhccCcceeecCCCccHHHHHHHHHhc-CCCccccchhhhHHHHH---HHHHHHHhhccCchhhhhhccCceEEEeCCcc
Confidence 456788899999987777777777665 33343455666777776 35666654431 232223344665
Q ss_pred ccCCCccccCCcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEec
Q 044601 82 QMSQHFFLRTHKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHK 146 (213)
Q Consensus 82 ~L~~~~~l~~~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~ 146 (213)
+.... ..+||+| |+|.... ..+++|| ..|+ ++|++.|-+-
T Consensus 155 ~g~~e----~a~YDaI-----hvGAaa~-------~~pq~l~--------dqL~-~gGrllip~~ 194 (237)
T KOG1661|consen 155 KGYAE----QAPYDAI-----HVGAAAS-------ELPQELL--------DQLK-PGGRLLIPVG 194 (237)
T ss_pred ccCCc----cCCcceE-----EEccCcc-------ccHHHHH--------Hhhc-cCCeEEEeec
Confidence 55444 4789999 7885432 2566665 3455 8999888775
No 223
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=43.89 E-value=97 Score=25.31 Aligned_cols=78 Identities=17% Similarity=0.109 Sum_probs=42.0
Q ss_pred CeEEEEecCChhHHHHHHHHhC-CCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCE-EEEeeeccccCCCccc----
Q 044601 16 QRILLVGEGDFSFSLCLAREFG-FAHNMVATCLDTQETIANKYSNAVDNVRELEERGCL-VFYGVDAMQMSQHFFL---- 89 (213)
Q Consensus 16 ~~ILlVGEGnFSFS~aLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~-V~~gVDAt~L~~~~~l---- 89 (213)
++||+.| |+=-...+||+.+. .+.+|+++..+..++ +.+.+..+...+.+ ..+.+|.++......+
T Consensus 3 k~vlItG-~s~~iG~~la~~l~~~g~~vi~~~r~~~~~-------~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 74 (245)
T PRK12824 3 KIALVTG-AKRGIGSAIARELLNDGYRVIATYFSGNDC-------AKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEI 74 (245)
T ss_pred CEEEEeC-CCchHHHHHHHHHHHcCCEEEEEeCCcHHH-------HHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 4678887 44444445555441 246888888775422 22223333333433 3567888875532111
Q ss_pred --cCCcccEEEEcC
Q 044601 90 --RTHKFDRVIYNF 101 (213)
Q Consensus 90 --~~~~FDrIiFNF 101 (213)
.....|.||.|=
T Consensus 75 ~~~~~~id~vi~~a 88 (245)
T PRK12824 75 EEEEGPVDILVNNA 88 (245)
T ss_pred HHHcCCCCEEEECC
Confidence 124589888763
No 224
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=43.63 E-value=20 Score=27.34 Aligned_cols=30 Identities=27% Similarity=0.306 Sum_probs=20.2
Q ss_pred CCeEEEEecCChhHHHHHHHHhCCCCeEEE
Q 044601 15 KQRILLVGEGDFSFSLCLAREFGFAHNMVA 44 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aLa~~~~~~~~l~A 44 (213)
+.=||+-||+||.=.+.-++..|..+.+++
T Consensus 97 d~ivLvSgD~Df~~~v~~l~~~g~~V~v~~ 126 (146)
T PF01936_consen 97 DTIVLVSGDSDFAPLVRKLRERGKRVIVVG 126 (146)
T ss_dssp SEEEEE---GGGHHHHHHHHHH--EEEEEE
T ss_pred CEEEEEECcHHHHHHHHHHHHcCCEEEEEE
Confidence 666888899999999999998875556665
No 225
>PRK06172 short chain dehydrogenase; Provisional
Probab=43.53 E-value=93 Score=25.80 Aligned_cols=79 Identities=18% Similarity=0.136 Sum_probs=44.4
Q ss_pred CCeEEEEecCChhHHHHHHHHh-CCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEE-EEeeeccccCCCccc---
Q 044601 15 KQRILLVGEGDFSFSLCLAREF-GFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLV-FYGVDAMQMSQHFFL--- 89 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V-~~gVDAt~L~~~~~l--- 89 (213)
+++||++|=+. ....++++.+ ..+.+|++++.+.. .+ ....+.+++.+..+ .+.+|+++......+
T Consensus 7 ~k~ilItGas~-~iG~~ia~~l~~~G~~v~~~~r~~~-~~-------~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~ 77 (253)
T PRK06172 7 GKVALVTGGAA-GIGRATALAFAREGAKVVVADRDAA-GG-------EETVALIREAGGEALFVACDVTRDAEVKALVEQ 77 (253)
T ss_pred CCEEEEeCCCc-hHHHHHHHHHHHcCCEEEEEeCCHH-HH-------HHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 57899998543 3344444433 12467888876632 22 12234455555543 567898876533221
Q ss_pred ---cCCcccEEEEcCC
Q 044601 90 ---RTHKFDRVIYNFP 102 (213)
Q Consensus 90 ---~~~~FDrIiFNFP 102 (213)
+..+.|.||.|--
T Consensus 78 ~~~~~g~id~li~~ag 93 (253)
T PRK06172 78 TIAAYGRLDYAFNNAG 93 (253)
T ss_pred HHHHhCCCCEEEECCC
Confidence 1246899998853
No 226
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=43.12 E-value=83 Score=30.50 Aligned_cols=37 Identities=22% Similarity=0.361 Sum_probs=25.5
Q ss_pred CCCCCeEEEEecCChhHHHH--HHHHhCCCCeEEEeccC
Q 044601 12 YSSKQRILLVGEGDFSFSLC--LAREFGFAHNMVATCLD 48 (213)
Q Consensus 12 y~~~~~ILlVGEGnFSFS~a--La~~~~~~~~l~ATs~d 48 (213)
|-.++|+.++||++...+++ |.+.+|-.+.+++|..+
T Consensus 302 ~l~Gkrv~I~gd~~~a~~l~~~L~~ELGm~vv~~g~~~~ 340 (513)
T CHL00076 302 NLTGKKAVVFGDATHAASMTKILAREMGIRVSCAGTYCK 340 (513)
T ss_pred ccCCCEEEEEcCchHHHHHHHHHHHhCCCEEEEecCccc
Confidence 55679999999998888876 56788644333344433
No 227
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=42.86 E-value=23 Score=28.73 Aligned_cols=28 Identities=11% Similarity=0.107 Sum_probs=23.2
Q ss_pred HHHHHhhcchHHHHHHHHHhCCCEEEEe
Q 044601 50 QETIANKYSNAVDNVRELEERGCLVFYG 77 (213)
Q Consensus 50 ~~~l~~kY~~a~~ni~~L~~~g~~V~~g 77 (213)
..+...-|+++..||..|+++||+.++-
T Consensus 39 ~g~e~~fY~Di~rIL~dLk~~GVtl~~A 66 (144)
T KOG4549|consen 39 KGEEMIFYDDIRRILVDLKKLGVTLIHA 66 (144)
T ss_pred CcceeeeccchhHHHHHHHhcCcEEEEe
Confidence 3455667999999999999999998863
No 228
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=42.60 E-value=2.2e+02 Score=24.82 Aligned_cols=133 Identities=18% Similarity=0.201 Sum_probs=77.5
Q ss_pred CCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEee-eccccCCCccccCCc
Q 044601 15 KQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGV-DAMQMSQHFFLRTHK 93 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gV-DAt~L~~~~~l~~~~ 93 (213)
..|||=+|=||=++=.-|++.- -...|+.+-|-.. .+.- ..||.+=+..--.|-|.+ |.++- + ...++
T Consensus 68 A~~VlDLGtGNG~~L~~L~~eg-f~~~L~GvDYs~~-AV~L-----A~niAe~~~~~n~I~f~q~DI~~~-~---~~~~q 136 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEG-FQSKLTGVDYSEK-AVEL-----AQNIAERDGFSNEIRFQQLDITDP-D---FLSGQ 136 (227)
T ss_pred ccceeeccCCchHHHHHHHHhc-CCCCccccccCHH-HHHH-----HHHHHHhcCCCcceeEEEeeccCC-c---ccccc
Confidence 3599999999999999998762 2234666655432 2221 457776665555576665 44443 1 12456
Q ss_pred ccEEEEcCCcCCCccccc--chHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCCCCCcccHHhHHHH---hCcEEE
Q 044601 94 FDRVIYNFPHVGFIFREN--SYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGDPYNKWELVKKAEK---IGLTLQ 168 (213)
Q Consensus 94 FDrIiFNFPH~G~~~~e~--~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py~~W~i~~lA~~---~gl~l~ 168 (213)
||.|.= ||+=| .-.....+-+| .-+..+...+|+ |+|...||.|+ |..-+|..+ .||.+.
T Consensus 137 fdlvlD-------KGT~DAisLs~d~~~~r~-~~Y~d~v~~ll~-~~gifvItSCN------~T~dELv~~f~~~~f~~~ 201 (227)
T KOG1271|consen 137 FDLVLD-------KGTLDAISLSPDGPVGRL-VVYLDSVEKLLS-PGGIFVITSCN------FTKDELVEEFENFNFEYL 201 (227)
T ss_pred eeEEee-------cCceeeeecCCCCcccce-eeehhhHhhccC-CCcEEEEEecC------ccHHHHHHHHhcCCeEEE
Confidence 666641 11100 00000111222 457778899998 99999999864 666666554 356666
Q ss_pred EEeec
Q 044601 169 EVVPF 173 (213)
Q Consensus 169 ~~~~F 173 (213)
..+|-
T Consensus 202 ~tvp~ 206 (227)
T KOG1271|consen 202 STVPT 206 (227)
T ss_pred Eeecc
Confidence 66543
No 229
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=42.51 E-value=1.4e+02 Score=23.75 Aligned_cols=76 Identities=17% Similarity=0.203 Sum_probs=48.6
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCC
Q 044601 13 SSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTH 92 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~ 92 (213)
..+.+||=+|=|.=.++..|++. +..++|.-.|.. +.+ .+.+|+.. ..+++ +..-|+.++.. ...
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~--~~~---~~~~~~~~--~~~v~-ii~~D~~~~~~----~~~ 76 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPR--LAP---RLREKFAA--ADNLT-VIHGDALKFDL----PKL 76 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHH--HHH---HHHHHhcc--CCCEE-EEECchhcCCc----ccc
Confidence 34678999999988888888876 347777777732 222 23334332 12344 44677777642 234
Q ss_pred cccEEEEcCCc
Q 044601 93 KFDRVIYNFPH 103 (213)
Q Consensus 93 ~FDrIiFNFPH 103 (213)
.||.|+-|.|.
T Consensus 77 ~~d~vi~n~Py 87 (169)
T smart00650 77 QPYKVVGNLPY 87 (169)
T ss_pred CCCEEEECCCc
Confidence 69999999996
No 230
>PRK07109 short chain dehydrogenase; Provisional
Probab=42.49 E-value=92 Score=27.86 Aligned_cols=78 Identities=15% Similarity=0.114 Sum_probs=46.8
Q ss_pred CCCeEEEEecCChhHHHHHHHHh-CCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEE-EEeeeccccCCCccc--
Q 044601 14 SKQRILLVGEGDFSFSLCLAREF-GFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLV-FYGVDAMQMSQHFFL-- 89 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V-~~gVDAt~L~~~~~l-- 89 (213)
+.++||+.|=.. ..-+++++.+ ..+.+|++++.+. +. ..+..+++++.|+.+ .+.+|.++......+
T Consensus 7 ~~k~vlITGas~-gIG~~la~~la~~G~~Vvl~~R~~-~~-------l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~ 77 (334)
T PRK07109 7 GRQVVVITGASA-GVGRATARAFARRGAKVVLLARGE-EG-------LEALAAEIRAAGGEALAVVADVADAEAVQAAAD 77 (334)
T ss_pred CCCEEEEECCCC-HHHHHHHHHHHHCCCEEEEEECCH-HH-------HHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHH
Confidence 356899998543 4445555544 2356888887652 21 223455666677655 567898887654322
Q ss_pred ----cCCcccEEEEc
Q 044601 90 ----RTHKFDRVIYN 100 (213)
Q Consensus 90 ----~~~~FDrIiFN 100 (213)
.....|.||.|
T Consensus 78 ~~~~~~g~iD~lInn 92 (334)
T PRK07109 78 RAEEELGPIDTWVNN 92 (334)
T ss_pred HHHHHCCCCCEEEEC
Confidence 12468988876
No 231
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=42.46 E-value=2.1e+02 Score=24.18 Aligned_cols=79 Identities=19% Similarity=0.234 Sum_probs=42.4
Q ss_pred CCCeEEEEecCC-hhHHHHHHHHh-CCCCeEEEeccCCHHHHHhhcchHHHHHHHHHh-CCCEEEEeeeccccCCCccc-
Q 044601 14 SKQRILLVGEGD-FSFSLCLAREF-GFAHNMVATCLDTQETIANKYSNAVDNVRELEE-RGCLVFYGVDAMQMSQHFFL- 89 (213)
Q Consensus 14 ~~~~ILlVGEGn-FSFS~aLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~-~g~~V~~gVDAt~L~~~~~l- 89 (213)
+++.+|+.|=+. ---.+++|+.+ ..+.+|+.+..+. .+ .+.+++|.+ .|....+.+|+++......+
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~--~~-------~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~ 77 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSE--VL-------EKRVKPLAEEIGCNFVSELDVTNPKSISNLF 77 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCch--HH-------HHHHHHHHHhcCCceEEEccCCCHHHHHHHH
Confidence 357889999863 12223333332 1245677665431 11 122444433 25545678899887653221
Q ss_pred -----cCCcccEEEEcC
Q 044601 90 -----RTHKFDRVIYNF 101 (213)
Q Consensus 90 -----~~~~FDrIiFNF 101 (213)
+..+.|.+|.|-
T Consensus 78 ~~~~~~~g~iDilVnna 94 (260)
T PRK06603 78 DDIKEKWGSFDFLLHGM 94 (260)
T ss_pred HHHHHHcCCccEEEEcc
Confidence 135789988875
No 232
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=42.35 E-value=1.8e+02 Score=23.37 Aligned_cols=60 Identities=17% Similarity=0.242 Sum_probs=39.6
Q ss_pred HHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCCCCCcccHHhHHHHhC-cEEEEEeecCCC
Q 044601 115 QIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGDPYNKWELVKKAEKIG-LTLQEVVPFCKQ 176 (213)
Q Consensus 115 ~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py~~W~i~~lA~~~g-l~l~~~~~F~~~ 176 (213)
....-...+..++..+..+|+ ++|.+.|-+.+.. ...+-+..+....| +.+...+.....
T Consensus 27 ~~~~y~~~~~~~~~~~~rvLk-~~g~~~i~~~~~~-~~~~~~~~~~~~~g~~~~~~~iiW~K~ 87 (231)
T PF01555_consen 27 NHEEYLEWMEEWLKECYRVLK-PGGSIFIFIDDRE-IAGFLFELALEIFGGFFLRNEIIWNKP 87 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHHEE-EEEEEEEEE-CCE-ECTHHHHHHHHHHTT-EEEEEEEEE-S
T ss_pred CHHHHHHHHHHHHHHHHhhcC-CCeeEEEEecchh-hhHHHHHHHHHHhhhhheeccceeEec
Confidence 344556778899999999998 9999998886532 22222334555557 988888777654
No 233
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=41.36 E-value=80 Score=29.45 Aligned_cols=29 Identities=28% Similarity=0.489 Sum_probs=21.6
Q ss_pred CCCCCCeEEEEecCChhHHHH--HHHHhCCC
Q 044601 11 HYSSKQRILLVGEGDFSFSLC--LAREFGFA 39 (213)
Q Consensus 11 ~y~~~~~ILlVGEGnFSFS~a--La~~~~~~ 39 (213)
++-.++|+.++||++..++++ |++.+|-.
T Consensus 297 ~~l~gkrv~i~g~~~~~~~l~~~L~~elG~~ 327 (430)
T cd01981 297 QNLTGKRAFVFGDATHVAAATRILAREMGFR 327 (430)
T ss_pred ccccCCeEEEEcChHHHHHHHHHHHHHcCCE
Confidence 455689999999998777765 56677633
No 234
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=41.30 E-value=62 Score=30.38 Aligned_cols=65 Identities=15% Similarity=0.315 Sum_probs=41.0
Q ss_pred CCCeEEEEecCChhHHHHH-HHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccC
Q 044601 14 SKQRILLVGEGDFSFSLCL-AREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMS 84 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aL-a~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~ 84 (213)
.+++|++||-||-..-.|. +..++ ..|+--...+..+ .+....-++.|++.|+.++++...+++.
T Consensus 271 ~gk~VvVIGgG~~a~d~A~~l~~~G--~~Vtlv~~~~~~~----~~~~~~~~~~l~~~GV~~~~~~~~~~i~ 336 (449)
T TIGR01316 271 AGKSVVVIGGGNTAVDSARTALRLG--AEVHCLYRRTRED----MTARVEEIAHAEEEGVKFHFLCQPVEII 336 (449)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--CEEEEEeecCccc----CCCCHHHHHHHHhCCCEEEeccCcEEEE
Confidence 4689999999987665554 23344 3343333333221 2223445688999999999888777764
No 235
>PRK07791 short chain dehydrogenase; Provisional
Probab=40.70 E-value=1.2e+02 Score=26.16 Aligned_cols=86 Identities=17% Similarity=0.128 Sum_probs=46.8
Q ss_pred CCCeEEEEecCChhHHHHHHHHh-CCCCeEEEeccCCHHHHH-hhcchHHHHHHHHHhCCCEE-EEeeeccccCCCccc-
Q 044601 14 SKQRILLVGEGDFSFSLCLAREF-GFAHNMVATCLDTQETIA-NKYSNAVDNVRELEERGCLV-FYGVDAMQMSQHFFL- 89 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa~~~-~~~~~l~ATs~ds~~~l~-~kY~~a~~ni~~L~~~g~~V-~~gVDAt~L~~~~~l- 89 (213)
+++.+|+.|=+. ..-.++++.+ ..+.+|+++..+....-. ..=......+++|++.|..+ .+.+|.++......+
T Consensus 5 ~~k~~lITGas~-GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~ 83 (286)
T PRK07791 5 DGRVVIVTGAGG-GIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLV 83 (286)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHH
Confidence 467889998554 4455555544 135677777654310000 00001233456676666544 677899886543221
Q ss_pred -----cCCcccEEEEc
Q 044601 90 -----RTHKFDRVIYN 100 (213)
Q Consensus 90 -----~~~~FDrIiFN 100 (213)
...+.|.+|.|
T Consensus 84 ~~~~~~~g~id~lv~n 99 (286)
T PRK07791 84 DAAVETFGGLDVLVNN 99 (286)
T ss_pred HHHHHhcCCCCEEEEC
Confidence 12568998887
No 236
>PRK05867 short chain dehydrogenase; Provisional
Probab=40.52 E-value=1e+02 Score=25.67 Aligned_cols=79 Identities=15% Similarity=0.121 Sum_probs=45.5
Q ss_pred CCCeEEEEecCChhHHHHHHHHh-CCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEE-EEeeeccccCCCccc--
Q 044601 14 SKQRILLVGEGDFSFSLCLAREF-GFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLV-FYGVDAMQMSQHFFL-- 89 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V-~~gVDAt~L~~~~~l-- 89 (213)
+++++|+.|=+. ....++++.+ ..+.+|+.++.+. +. .+...++|+..|.++ .+.+|.++......+
T Consensus 8 ~~k~vlVtGas~-gIG~~ia~~l~~~G~~V~~~~r~~-~~-------~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 78 (253)
T PRK05867 8 HGKRALITGAST-GIGKRVALAYVEAGAQVAIAARHL-DA-------LEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLD 78 (253)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEcCCH-HH-------HHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHH
Confidence 367899999644 3344444443 2356888887653 22 223345566555443 567888876543221
Q ss_pred ----cCCcccEEEEcC
Q 044601 90 ----RTHKFDRVIYNF 101 (213)
Q Consensus 90 ----~~~~FDrIiFNF 101 (213)
...+.|.+|.|=
T Consensus 79 ~~~~~~g~id~lv~~a 94 (253)
T PRK05867 79 QVTAELGGIDIAVCNA 94 (253)
T ss_pred HHHHHhCCCCEEEECC
Confidence 124689888874
No 237
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=40.37 E-value=2.3e+02 Score=23.97 Aligned_cols=77 Identities=13% Similarity=0.134 Sum_probs=40.2
Q ss_pred CCCeEEEEecC---ChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHh-C-CC-EEEEeeeccccCCCc
Q 044601 14 SKQRILLVGEG---DFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEE-R-GC-LVFYGVDAMQMSQHF 87 (213)
Q Consensus 14 ~~~~ILlVGEG---nFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~-~-g~-~V~~gVDAt~L~~~~ 87 (213)
+++.+|+.|=+ ..-.+.|.+=+ ..+.+|+.+....+. .+.+++|.+ . +. .+.+.+|+++..+..
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la-~~G~~v~~~~r~~~~---------~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~ 75 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLH-NAGAKLVFTYAGERL---------EKEVRELADTLEGQESLLLPCDVTSDEEIT 75 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHH-HCCCEEEEecCcccc---------hHHHHHHHHHcCCCceEEEecCCCCHHHHH
Confidence 35789999964 45444333211 135677776543211 111222221 1 33 345678998876432
Q ss_pred cc------cCCcccEEEEc
Q 044601 88 FL------RTHKFDRVIYN 100 (213)
Q Consensus 88 ~l------~~~~FDrIiFN 100 (213)
.+ +..+.|.+|.|
T Consensus 76 ~~~~~~~~~~g~ld~lv~n 94 (257)
T PRK08594 76 ACFETIKEEVGVIHGVAHC 94 (257)
T ss_pred HHHHHHHHhCCCccEEEEC
Confidence 21 12678988877
No 238
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=40.01 E-value=1.1e+02 Score=28.13 Aligned_cols=83 Identities=16% Similarity=0.181 Sum_probs=43.8
Q ss_pred CCCeEEEEecCChhHHHHH-HHHhCCCCeEEEeccCCHHHH-Hhhc-chH-HHHHHHHHhCCCEEEEeeeccccCCCcc-
Q 044601 14 SKQRILLVGEGDFSFSLCL-AREFGFAHNMVATCLDTQETI-ANKY-SNA-VDNVRELEERGCLVFYGVDAMQMSQHFF- 88 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aL-a~~~~~~~~l~ATs~ds~~~l-~~kY-~~a-~~ni~~L~~~g~~V~~gVDAt~L~~~~~- 88 (213)
..++|++||-|.-....|. ++..+ ..|+--... +.+ .... ++. ..-.+.|++.|+.++.+..++.+.....
T Consensus 136 ~~~~vvViGgG~~g~e~A~~l~~~g--~~Vtli~~~--~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~ 211 (427)
T TIGR03385 136 KVENVVIIGGGYIGIEMAEALRERG--KNVTLIHRS--ERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGEERV 211 (427)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCC--CcEEEEECC--cccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEecCCCE
Confidence 3579999999965544333 22333 333322222 112 1111 122 2235778899999998776666643221
Q ss_pred --cc---CCcccEEEEc
Q 044601 89 --LR---THKFDRVIYN 100 (213)
Q Consensus 89 --l~---~~~FDrIiFN 100 (213)
+. .-.+|.||+=
T Consensus 212 v~~~~g~~i~~D~vi~a 228 (427)
T TIGR03385 212 KVFTSGGVYQADMVILA 228 (427)
T ss_pred EEEcCCCEEEeCEEEEC
Confidence 11 2357888863
No 239
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=39.95 E-value=1.1e+02 Score=26.61 Aligned_cols=34 Identities=24% Similarity=0.406 Sum_probs=25.2
Q ss_pred CCCCCCeEEEEec-CChhHHHH-HHHHhCCCCeEEEec
Q 044601 11 HYSSKQRILLVGE-GDFSFSLC-LAREFGFAHNMVATC 46 (213)
Q Consensus 11 ~y~~~~~ILlVGE-GnFSFS~a-La~~~~~~~~l~ATs 46 (213)
...++.+||+.|- |...-++. +|++.+ .++++|+
T Consensus 174 ~~~~g~~vlI~g~~g~ig~~~~~~a~~~g--~~vi~~~ 209 (350)
T cd08274 174 GVGAGETVLVTGASGGVGSALVQLAKRRG--AIVIAVA 209 (350)
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHhcC--CEEEEEe
Confidence 4567899999997 88877754 467765 5678776
No 240
>PRK06194 hypothetical protein; Provisional
Probab=39.93 E-value=88 Score=26.57 Aligned_cols=80 Identities=19% Similarity=0.113 Sum_probs=44.5
Q ss_pred CCeEEEEecCChhHHHHHHHHh-CCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEE-EEeeeccccCCCccc---
Q 044601 15 KQRILLVGEGDFSFSLCLAREF-GFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLV-FYGVDAMQMSQHFFL--- 89 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V-~~gVDAt~L~~~~~l--- 89 (213)
.++||+.|=+.+= -.+|++.+ ..+.+|+++..+.. . ...+.++|+..|..+ .+..|+++......+
T Consensus 6 ~k~vlVtGasggI-G~~la~~l~~~G~~V~~~~r~~~-~-------~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~ 76 (287)
T PRK06194 6 GKVAVITGAASGF-GLAFARIGAALGMKLVLADVQQD-A-------LDRAVAELRAQGAEVLGVRTDVSDAAQVEALADA 76 (287)
T ss_pred CCEEEEeCCccHH-HHHHHHHHHHCCCEEEEEeCChH-H-------HHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 4689999976532 22333322 23567888766432 1 223455666656654 578898876543221
Q ss_pred ---cCCcccEEEEcCCc
Q 044601 90 ---RTHKFDRVIYNFPH 103 (213)
Q Consensus 90 ---~~~~FDrIiFNFPH 103 (213)
.....|.||.|=-.
T Consensus 77 ~~~~~g~id~vi~~Ag~ 93 (287)
T PRK06194 77 ALERFGAVHLLFNNAGV 93 (287)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 12357877777433
No 241
>PRK06949 short chain dehydrogenase; Provisional
Probab=39.61 E-value=95 Score=25.72 Aligned_cols=81 Identities=12% Similarity=0.120 Sum_probs=43.6
Q ss_pred CCCeEEEEecCChhHHHHHHHHh-CCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCC-EEEEeeeccccCCCccc--
Q 044601 14 SKQRILLVGEGDFSFSLCLAREF-GFAHNMVATCLDTQETIANKYSNAVDNVRELEERGC-LVFYGVDAMQMSQHFFL-- 89 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~V~~gVDAt~L~~~~~l-- 89 (213)
.+++||+.|=+. -...++++.+ ..+..|++++.+.+ .+ ......|+..+. ...+.+|+++......+
T Consensus 8 ~~k~ilItGasg-~IG~~~a~~l~~~G~~Vi~~~r~~~-~~-------~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 78 (258)
T PRK06949 8 EGKVALVTGASS-GLGARFAQVLAQAGAKVVLASRRVE-RL-------KELRAEIEAEGGAAHVVSLDVTDYQSIKAAVA 78 (258)
T ss_pred CCCEEEEECCCc-HHHHHHHHHHHHCCCEEEEEeCCHH-HH-------HHHHHHHHhcCCcEEEEEecCCCHHHHHHHHH
Confidence 368899999533 3333343333 13567888877632 21 122334444333 23566788876533221
Q ss_pred ----cCCcccEEEEcCCc
Q 044601 90 ----RTHKFDRVIYNFPH 103 (213)
Q Consensus 90 ----~~~~FDrIiFNFPH 103 (213)
.....|.||.|-..
T Consensus 79 ~~~~~~~~~d~li~~ag~ 96 (258)
T PRK06949 79 HAETEAGTIDILVNNSGV 96 (258)
T ss_pred HHHHhcCCCCEEEECCCC
Confidence 12468988887643
No 242
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=38.76 E-value=1.2e+02 Score=24.62 Aligned_cols=79 Identities=23% Similarity=0.185 Sum_probs=43.3
Q ss_pred HHHHHHhCC----CEEEEeeeccccCCCccccCCcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCC
Q 044601 63 NVRELEERG----CLVFYGVDAMQMSQHFFLRTHKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEEN 138 (213)
Q Consensus 63 ni~~L~~~g----~~V~~gVDAt~L~~~~~l~~~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~ 138 (213)
.-+.|++.| +++++ -.=.+|.+..+ ..+.|.||||+=-+.+.. ..|....+=--.=++.|..+|+ ++
T Consensus 15 T~~rL~~~~~~~~v~li~-~sHe~l~~~i~--~~~v~~~iFNLGYLPggD-----k~i~T~~~TTl~Al~~al~lL~-~g 85 (140)
T PF06962_consen 15 TRERLEEAGLEDRVTLIL-DSHENLDEYIP--EGPVDAAIFNLGYLPGGD-----KSITTKPETTLKALEAALELLK-PG 85 (140)
T ss_dssp HHHHHHHTT-GSGEEEEE-S-GGGGGGT----S--EEEEEEEESB-CTS------TTSB--HHHHHHHHHHHHHHEE-EE
T ss_pred HHHHHHhcCCCCcEEEEE-CCHHHHHhhCc--cCCcCEEEEECCcCCCCC-----CCCCcCcHHHHHHHHHHHHhhc-cC
Confidence 345566654 33333 23333444332 258999999986666532 1233444444455677889998 99
Q ss_pred CeEEEEeccCCC
Q 044601 139 GEIHVTHKEGDP 150 (213)
Q Consensus 139 G~ihvTl~~~~p 150 (213)
|.|.|++=.|.|
T Consensus 86 G~i~iv~Y~GH~ 97 (140)
T PF06962_consen 86 GIITIVVYPGHP 97 (140)
T ss_dssp EEEEEEE--STC
T ss_pred CEEEEEEeCCCC
Confidence 999999987765
No 243
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=38.58 E-value=99 Score=26.71 Aligned_cols=75 Identities=17% Similarity=0.237 Sum_probs=41.5
Q ss_pred CCCeEEEEecC---Ch--hHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHH-HhCCCEEEEeeeccccCCCc
Q 044601 14 SKQRILLVGEG---DF--SFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVREL-EERGCLVFYGVDAMQMSQHF 87 (213)
Q Consensus 14 ~~~~ILlVGEG---nF--SFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L-~~~g~~V~~gVDAt~L~~~~ 87 (213)
+++.+|+.|=+ .. ..++.|++ .+.+|+.+..+. ++.+ .++++ ++.|....+.+|.++.....
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~---~G~~Vil~~r~~--~~~~-------~~~~~~~~~~~~~~~~~Dv~d~~~v~ 71 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFE---QGAELAFTYLNE--ALKK-------RVEPIAQELGSDYVYELDVSKPEHFK 71 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHH---CCCEEEEEecCH--HHHH-------HHHHHHHhcCCceEEEecCCCHHHHH
Confidence 35789999964 33 33333443 256777776542 1111 12222 22243356788999876542
Q ss_pred cc------cCCcccEEEEc
Q 044601 88 FL------RTHKFDRVIYN 100 (213)
Q Consensus 88 ~l------~~~~FDrIiFN 100 (213)
.+ +..+.|.+|.|
T Consensus 72 ~~~~~i~~~~g~iDilVnn 90 (274)
T PRK08415 72 SLAESLKKDLGKIDFIVHS 90 (274)
T ss_pred HHHHHHHHHcCCCCEEEEC
Confidence 21 13578988877
No 244
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=38.42 E-value=97 Score=26.64 Aligned_cols=37 Identities=16% Similarity=0.385 Sum_probs=24.2
Q ss_pred cCCCCCCeEEEEecCCh-hHHHHHHHHhCCCCeEEEeccC
Q 044601 10 NHYSSKQRILLVGEGDF-SFSLCLAREFGFAHNMVATCLD 48 (213)
Q Consensus 10 ~~y~~~~~ILlVGEGnF-SFS~aLa~~~~~~~~l~ATs~d 48 (213)
....++.+||+.|.|.. .++..||+..| .++++|+-.
T Consensus 161 ~~~~~~~~vli~g~g~vG~~~~~la~~~G--~~V~~~~~s 198 (338)
T cd08254 161 GEVKPGETVLVIGLGGLGLNAVQIAKAMG--AAVIAVDIK 198 (338)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcC--CEEEEEcCC
Confidence 34667899999887642 34555677765 567777443
No 245
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=38.34 E-value=2.6e+02 Score=23.98 Aligned_cols=77 Identities=16% Similarity=0.199 Sum_probs=41.9
Q ss_pred CCCeEEEEecC---ChhHHHHHHHHh-CCCCeEEEeccCCHHHHHhhcchHHHHHHHHHh-CCCEEEEeeeccccCCCcc
Q 044601 14 SKQRILLVGEG---DFSFSLCLAREF-GFAHNMVATCLDTQETIANKYSNAVDNVRELEE-RGCLVFYGVDAMQMSQHFF 88 (213)
Q Consensus 14 ~~~~ILlVGEG---nFSFS~aLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~-~g~~V~~gVDAt~L~~~~~ 88 (213)
+++.+|+.|=+ ..-.+.|. .+ ..+.+|+.+..+ +.+. +.+++|.+ .|..+.+-+|.++..+...
T Consensus 9 ~~k~~lItGas~~~GIG~aia~--~la~~G~~V~l~~r~--~~~~-------~~~~~l~~~~~~~~~~~~Dl~~~~~v~~ 77 (272)
T PRK08159 9 AGKRGLILGVANNRSIAWGIAK--ACRAAGAELAFTYQG--DALK-------KRVEPLAAELGAFVAGHCDVTDEASIDA 77 (272)
T ss_pred cCCEEEEECCCCCCcHHHHHHH--HHHHCCCEEEEEcCc--hHHH-------HHHHHHHHhcCCceEEecCCCCHHHHHH
Confidence 35789999963 44444333 22 135677776543 1111 12333322 2444457788887665432
Q ss_pred c------cCCcccEEEEcC
Q 044601 89 L------RTHKFDRVIYNF 101 (213)
Q Consensus 89 l------~~~~FDrIiFNF 101 (213)
+ .....|.+|.|-
T Consensus 78 ~~~~~~~~~g~iD~lv~nA 96 (272)
T PRK08159 78 VFETLEKKWGKLDFVVHAI 96 (272)
T ss_pred HHHHHHHhcCCCcEEEECC
Confidence 1 135689999884
No 246
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=38.00 E-value=73 Score=30.23 Aligned_cols=77 Identities=18% Similarity=0.310 Sum_probs=54.7
Q ss_pred ccccCCCCCCeEEEEecCChhHHHHHHHHh-CCCCeEEEeccCCHHHHHhhcchHH-HHHHHHHhC-CCEEEEeeecccc
Q 044601 7 KWSNHYSSKQRILLVGEGDFSFSLCLAREF-GFAHNMVATCLDTQETIANKYSNAV-DNVRELEER-GCLVFYGVDAMQM 83 (213)
Q Consensus 7 k~~~~y~~~~~ILlVGEGnFSFS~aLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~-~ni~~L~~~-g~~V~~gVDAt~L 83 (213)
+-+...++..+|-++|=||+- .-||+.+ ..+..|++-+...++++.++|+.+. +++.-|-++ .=.|++.|.|..+
T Consensus 44 ~s~~~~k~tl~IaIIGfGnmG--qflAetli~aGh~li~hsRsdyssaa~~yg~~~ft~lhdlcerhpDvvLlctsilsi 121 (480)
T KOG2380|consen 44 DSIEQWKATLVIAIIGFGNMG--QFLAETLIDAGHGLICHSRSDYSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSILSI 121 (480)
T ss_pred chhhhcccceEEEEEecCcHH--HHHHHHHHhcCceeEecCcchhHHHHHHhcccccccHHHHHhcCCCEEEEEehhhhH
Confidence 334455778999999999975 4455544 2367888888888999999999863 455556554 3467778777766
Q ss_pred CC
Q 044601 84 SQ 85 (213)
Q Consensus 84 ~~ 85 (213)
++
T Consensus 122 ek 123 (480)
T KOG2380|consen 122 EK 123 (480)
T ss_pred HH
Confidence 64
No 247
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=37.87 E-value=1.5e+02 Score=24.79 Aligned_cols=87 Identities=16% Similarity=0.101 Sum_probs=44.0
Q ss_pred CCeEEEEecCCh-hHHHHHHHHh-CCCCeEEEeccCCHHHHHhh---cchHHHHHHHHHhCCCE-EEEeeeccccCCCcc
Q 044601 15 KQRILLVGEGDF-SFSLCLAREF-GFAHNMVATCLDTQETIANK---YSNAVDNVRELEERGCL-VFYGVDAMQMSQHFF 88 (213)
Q Consensus 15 ~~~ILlVGEGnF-SFS~aLa~~~-~~~~~l~ATs~ds~~~l~~k---Y~~a~~ni~~L~~~g~~-V~~gVDAt~L~~~~~ 88 (213)
+++||+.|=+.| ....++++.+ ..+.+|++.+....+..... =++.....+.++..|.. ..+.+|.++..+...
T Consensus 5 ~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 84 (256)
T PRK12748 5 KKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHMEIDLSQPYAPNR 84 (256)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEECCCCCHHHHHH
Confidence 468999997654 2444444443 12457777765411110000 00111223445555543 467788887654211
Q ss_pred c------cCCcccEEEEcC
Q 044601 89 L------RTHKFDRVIYNF 101 (213)
Q Consensus 89 l------~~~~FDrIiFNF 101 (213)
+ .....|.||.|-
T Consensus 85 ~~~~~~~~~g~id~vi~~a 103 (256)
T PRK12748 85 VFYAVSERLGDPSILINNA 103 (256)
T ss_pred HHHHHHHhCCCCCEEEECC
Confidence 1 125689887764
No 248
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=37.43 E-value=1.5e+02 Score=26.46 Aligned_cols=53 Identities=17% Similarity=0.246 Sum_probs=33.6
Q ss_pred CCCCCCeEEEEecCChhHH-HHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEE
Q 044601 11 HYSSKQRILLVGEGDFSFS-LCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFY 76 (213)
Q Consensus 11 ~y~~~~~ILlVGEGnFSFS-~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~ 76 (213)
...++++||+.|.|-..-. ..+|+++| ...|++++.++ +.++.++++|+...+
T Consensus 184 ~~~~g~~VlV~G~g~vG~~a~q~ak~~G-~~~vi~~~~~~------------~~~~~~~~~Ga~~~i 237 (369)
T cd08301 184 KVKKGSTVAIFGLGAVGLAVAEGARIRG-ASRIIGVDLNP------------SKFEQAKKFGVTEFV 237 (369)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCH------------HHHHHHHHcCCceEE
Confidence 3467899999998866533 34577775 33688875543 234556667765443
No 249
>PRK07062 short chain dehydrogenase; Provisional
Probab=37.30 E-value=1.5e+02 Score=24.77 Aligned_cols=79 Identities=13% Similarity=0.160 Sum_probs=44.5
Q ss_pred CCCeEEEEecCChhHHHHHHHHh-CCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhC--CCEE-EEeeeccccCCCccc
Q 044601 14 SKQRILLVGEGDFSFSLCLAREF-GFAHNMVATCLDTQETIANKYSNAVDNVRELEER--GCLV-FYGVDAMQMSQHFFL 89 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~--g~~V-~~gVDAt~L~~~~~l 89 (213)
+++.+|+.|=+. ..-.++++.+ ..+.+|++++.+.+ .+ ....+.|++. +..+ .+.+|.++......+
T Consensus 7 ~~k~~lItGas~-giG~~ia~~l~~~G~~V~~~~r~~~-~~-------~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~ 77 (265)
T PRK07062 7 EGRVAVVTGGSS-GIGLATVELLLEAGASVAICGRDEE-RL-------ASAEARLREKFPGARLLAARCDVLDEADVAAF 77 (265)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHCCCeEEEEeCCHH-HH-------HHHHHHHHhhCCCceEEEEEecCCCHHHHHHH
Confidence 357899999543 4445555554 23568888877642 11 1223344433 3343 567888886543221
Q ss_pred ------cCCcccEEEEcC
Q 044601 90 ------RTHKFDRVIYNF 101 (213)
Q Consensus 90 ------~~~~FDrIiFNF 101 (213)
.....|.+|.|=
T Consensus 78 ~~~~~~~~g~id~li~~A 95 (265)
T PRK07062 78 AAAVEARFGGVDMLVNNA 95 (265)
T ss_pred HHHHHHhcCCCCEEEECC
Confidence 125689888874
No 250
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=37.27 E-value=1e+02 Score=25.21 Aligned_cols=81 Identities=15% Similarity=0.108 Sum_probs=43.1
Q ss_pred CCeEEEEecCChhHHHHHHHHh-CCCCeEEEe-ccCCHHHHHhhcchHHHHHHHHHhCCCE-EEEeeeccccCCCcccc-
Q 044601 15 KQRILLVGEGDFSFSLCLAREF-GFAHNMVAT-CLDTQETIANKYSNAVDNVRELEERGCL-VFYGVDAMQMSQHFFLR- 90 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aLa~~~-~~~~~l~AT-s~ds~~~l~~kY~~a~~ni~~L~~~g~~-V~~gVDAt~L~~~~~l~- 90 (213)
.++||++|= .=.-..+|++.+ ..+..++++ ..+.. . .....+.|+..+.. ..+.+|.++......+-
T Consensus 5 ~~~ilI~Ga-sg~iG~~la~~l~~~g~~v~~~~~r~~~-~-------~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 75 (247)
T PRK05565 5 GKVAIVTGA-SGGIGRAIAELLAKEGAKVVIAYDINEE-A-------AQELLEEIKEEGGDAIAVKADVSSEEDVENLVE 75 (247)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEcCCCHH-H-------HHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 457888883 222333344333 124677776 55432 1 12234445544543 46778988876432211
Q ss_pred -----CCcccEEEEcCCcC
Q 044601 91 -----THKFDRVIYNFPHV 104 (213)
Q Consensus 91 -----~~~FDrIiFNFPH~ 104 (213)
...+|.||+|=...
T Consensus 76 ~~~~~~~~id~vi~~ag~~ 94 (247)
T PRK05565 76 QIVEKFGKIDILVNNAGIS 94 (247)
T ss_pred HHHHHhCCCCEEEECCCcC
Confidence 13689999875443
No 251
>PLN02253 xanthoxin dehydrogenase
Probab=37.19 E-value=1e+02 Score=26.08 Aligned_cols=78 Identities=14% Similarity=0.165 Sum_probs=44.1
Q ss_pred CCeEEEEecCChhHHHHHHHHhC-CCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccc----
Q 044601 15 KQRILLVGEGDFSFSLCLAREFG-FAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFL---- 89 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l---- 89 (213)
++++|+.| |.=..-.++++.+. .+.+|+.+..+.+ . .....+.+....-...+.+|.++..+...+
T Consensus 18 ~k~~lItG-as~gIG~~la~~l~~~G~~v~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 88 (280)
T PLN02253 18 GKVALVTG-GATGIGESIVRLFHKHGAKVCIVDLQDD-L-------GQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFT 88 (280)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHH-H-------HHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHH
Confidence 57788888 44456666666552 3568887765422 1 122233443322234677898876543221
Q ss_pred --cCCcccEEEEcC
Q 044601 90 --RTHKFDRVIYNF 101 (213)
Q Consensus 90 --~~~~FDrIiFNF 101 (213)
...+.|.||.|=
T Consensus 89 ~~~~g~id~li~~A 102 (280)
T PLN02253 89 VDKFGTLDIMVNNA 102 (280)
T ss_pred HHHhCCCCEEEECC
Confidence 124689888774
No 252
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=37.00 E-value=4.6 Score=33.14 Aligned_cols=27 Identities=37% Similarity=0.610 Sum_probs=19.8
Q ss_pred CChhHHHHHHHHhCCCCeEEEeccCCHHH
Q 044601 24 GDFSFSLCLAREFGFAHNMVATCLDTQET 52 (213)
Q Consensus 24 GnFSFS~aLa~~~~~~~~l~ATs~ds~~~ 52 (213)
||+|||+||.-..+ ..+|-||.-++++
T Consensus 96 g~LSFslAlLD~~~--nGvVltsI~~Re~ 122 (151)
T PF14584_consen 96 GDLSFSLALLDDNN--NGVVLTSIHSREE 122 (151)
T ss_pred ccceeeeEEEeCCC--CEEEEEeeecCCC
Confidence 89999999987764 4566666666543
No 253
>PRK07814 short chain dehydrogenase; Provisional
Probab=36.35 E-value=1.1e+02 Score=25.71 Aligned_cols=76 Identities=14% Similarity=0.211 Sum_probs=42.9
Q ss_pred CCCeEEEEecCC---hhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEE-EEeeeccccCCCccc
Q 044601 14 SKQRILLVGEGD---FSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLV-FYGVDAMQMSQHFFL 89 (213)
Q Consensus 14 ~~~~ILlVGEGn---FSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V-~~gVDAt~L~~~~~l 89 (213)
+++++|+.|-+. .+.+..|+++ +.+|+.++.+.+ .+ ....+.++..|..+ .+.+|.++......+
T Consensus 9 ~~~~vlItGasggIG~~~a~~l~~~---G~~Vi~~~r~~~-~~-------~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~ 77 (263)
T PRK07814 9 DDQVAVVTGAGRGLGAAIALAFAEA---GADVLIAARTES-QL-------DEVAEQIRAAGRRAHVVAADLAHPEATAGL 77 (263)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHC---CCEEEEEeCCHH-HH-------HHHHHHHHhcCCcEEEEEccCCCHHHHHHH
Confidence 368899999776 3444444432 468888777532 11 12234455555544 567888876643211
Q ss_pred ------cCCcccEEEEc
Q 044601 90 ------RTHKFDRVIYN 100 (213)
Q Consensus 90 ------~~~~FDrIiFN 100 (213)
...+.|.||.|
T Consensus 78 ~~~~~~~~~~id~vi~~ 94 (263)
T PRK07814 78 AGQAVEAFGRLDIVVNN 94 (263)
T ss_pred HHHHHHHcCCCCEEEEC
Confidence 12467876655
No 254
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=36.00 E-value=2.7e+02 Score=23.62 Aligned_cols=112 Identities=18% Similarity=0.217 Sum_probs=59.8
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHH-HHh-------CCCEE-EEeeecccc
Q 044601 13 SSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRE-LEE-------RGCLV-FYGVDAMQM 83 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~-L~~-------~g~~V-~~gVDAt~L 83 (213)
.+..|||.+|.|.=--++.||++ +..|||.=+. +..+.+ .- .+.++.. ... .+..| ++--|+..+
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s-~~Ai~~-~~-~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l 109 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELS-ELAVEQ-FF-AENGLTPQTRQSGEFEHYQAGEITIYCGDFFAL 109 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccC-HHHHHH-HH-HHcCCCccccccccccccccCceEEEECcccCC
Confidence 45679999999999999999864 5677775444 333322 10 0001100 000 01112 233444444
Q ss_pred CCCccccCCcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCe-EEEEec
Q 044601 84 SQHFFLRTHKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGE-IHVTHK 146 (213)
Q Consensus 84 ~~~~~l~~~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~-ihvTl~ 146 (213)
.... ...||.|+= ...-+..+..+-..+++....+|+ |+|. +.+|+.
T Consensus 110 ~~~~---~~~fd~v~D------------~~~~~~l~~~~R~~~~~~l~~lL~-pgG~~~l~~~~ 157 (218)
T PRK13255 110 TAAD---LADVDAVYD------------RAALIALPEEMRERYVQQLAALLP-AGCRGLLVTLD 157 (218)
T ss_pred Cccc---CCCeeEEEe------------hHhHhhCCHHHHHHHHHHHHHHcC-CCCeEEEEEEE
Confidence 3211 134555541 001123445666789999999998 9997 445654
No 255
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=35.94 E-value=58 Score=25.18 Aligned_cols=31 Identities=26% Similarity=0.296 Sum_probs=21.2
Q ss_pred CCeEEEEecCChhHHHHHHHHhCCCCeEEEe
Q 044601 15 KQRILLVGEGDFSFSLCLAREFGFAHNMVAT 45 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aLa~~~~~~~~l~AT 45 (213)
+.=||+=|||||.=.+..++..|..+.+++.
T Consensus 101 d~ivLvSgD~Df~~~i~~lr~~G~~V~v~~~ 131 (149)
T cd06167 101 DTIVLVSGDSDFVPLVERLRELGKRVIVVGF 131 (149)
T ss_pred CEEEEEECCccHHHHHHHHHHcCCEEEEEcc
Confidence 4557777888888888888887644333333
No 256
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=35.90 E-value=31 Score=31.65 Aligned_cols=45 Identities=36% Similarity=0.497 Sum_probs=34.9
Q ss_pred CCcccEEEEcC-CcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEecc
Q 044601 91 THKFDRVIYNF-PHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKE 147 (213)
Q Consensus 91 ~~~FDrIiFNF-PH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~ 147 (213)
..+||.|=..| =|-.+. +..-.+.|+.+++..|+ |+|.+..|..+
T Consensus 143 ~~~FDvVScQFalHY~Fe-----------se~~ar~~l~Nvs~~Lk-~GG~FIgT~~d 188 (331)
T PF03291_consen 143 SRKFDVVSCQFALHYAFE-----------SEEKARQFLKNVSSLLK-PGGYFIGTTPD 188 (331)
T ss_dssp TS-EEEEEEES-GGGGGS-----------SHHHHHHHHHHHHHTEE-EEEEEEEEEE-
T ss_pred CCCcceeehHHHHHHhcC-----------CHHHHHHHHHHHHHhcC-CCCEEEEEecC
Confidence 36999999999 677763 33556789999999998 99999998654
No 257
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=35.89 E-value=1.1e+02 Score=26.68 Aligned_cols=33 Identities=21% Similarity=0.369 Sum_probs=22.2
Q ss_pred CCCCeEEEEecCChhHHH-HHHHHhCCCCeEEEec
Q 044601 13 SSKQRILLVGEGDFSFSL-CLAREFGFAHNMVATC 46 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~-aLa~~~~~~~~l~ATs 46 (213)
.++.+||+.|.|-...++ .||++.| ...|++|+
T Consensus 160 ~~g~~vlI~~~g~vg~~a~~la~~~G-~~~v~~~~ 193 (340)
T TIGR00692 160 ISGKSVLVTGAGPIGLMAIAVAKASG-AYPVIVSD 193 (340)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEC
Confidence 468999998887666554 3577765 22477773
No 258
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=35.77 E-value=2.6e+02 Score=23.35 Aligned_cols=153 Identities=15% Similarity=0.138 Sum_probs=80.7
Q ss_pred ccCCCCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCcc
Q 044601 9 SNHYSSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFF 88 (213)
Q Consensus 9 ~~~y~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~ 88 (213)
+....+..+||=||=|.=.++..|++..+ ...+++.-.. ++.+.. +.+++ .++.+. ..|+.. +
T Consensus 38 l~~~~~~~~VLDiGCG~G~~~~~L~~~~~-~~~v~giDiS-~~~l~~----A~~~~-----~~~~~~-~~d~~~-----~ 100 (204)
T TIGR03587 38 LNRLPKIASILELGANIGMNLAALKRLLP-FKHIYGVEIN-EYAVEK----AKAYL-----PNINII-QGSLFD-----P 100 (204)
T ss_pred HHhcCCCCcEEEEecCCCHHHHHHHHhCC-CCeEEEEECC-HHHHHH----HHhhC-----CCCcEE-EeeccC-----C
Confidence 44556778999999998888888988763 4566665333 332222 22222 134443 335443 2
Q ss_pred ccCCcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccC----------CCCCcccHH-
Q 044601 89 LRTHKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEG----------DPYNKWELV- 157 (213)
Q Consensus 89 l~~~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~----------~py~~W~i~- 157 (213)
...+.||.|+.+.-.. +.+..-+..+++.+..++ ++.|.|+-... .-...|+-.
T Consensus 101 ~~~~sfD~V~~~~vL~------------hl~p~~~~~~l~el~r~~---~~~v~i~e~~~~~~~~~~y~~~~~~~~~~d~ 165 (204)
T TIGR03587 101 FKDNFFDLVLTKGVLI------------HINPDNLPTAYRELYRCS---NRYILIAEYYNPSPVEISYRGNSGRLWKRDF 165 (204)
T ss_pred CCCCCEEEEEECChhh------------hCCHHHHHHHHHHHHhhc---CcEEEEEEeeCCCceeeeeeCCcchhhhhhH
Confidence 3467899999765321 112233445555555544 23333332211 011234333
Q ss_pred --hHHHH-hCcEEEEEeecCCCCCCCCccccCcCCCCCCCccCCCceEEEEEee
Q 044601 158 --KKAEK-IGLTLQEVVPFCKQDYPGYDNKRAQGYLSDAPFHIGDSSTYKFRLF 208 (213)
Q Consensus 158 --~lA~~-~gl~l~~~~~F~~~~yPgY~~krt~g~~~d~~f~~~~~~t~~F~~~ 208 (213)
.+... ..|+++.-. | + | ..+..||..++..|-++|.
T Consensus 166 ~~~~~~~~~~l~~~~~~-~-----~-~--------~~~~~~~~~~~~~~~~~~~ 204 (204)
T TIGR03587 166 AGEMMDRYPDLKLVDYG-F-----P-Y--------HRDPEFPNDDITWFLLEKR 204 (204)
T ss_pred HHHHHHhCCcceeeecc-c-----e-e--------ecCCCCCCCCceEEEEecC
Confidence 22222 246666631 2 1 2 3356688899988888773
No 259
>PRK12831 putative oxidoreductase; Provisional
Probab=35.76 E-value=96 Score=29.35 Aligned_cols=66 Identities=15% Similarity=0.307 Sum_probs=41.9
Q ss_pred CCCCeEEEEecCChhHHHHH-HHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccC
Q 044601 13 SSKQRILLVGEGDFSFSLCL-AREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMS 84 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~aL-a~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~ 84 (213)
..+++|++||-||-..-.|. +..++ ..|+.-...+.+++. ....-++.+++.|+.++++...+.+.
T Consensus 279 ~~gk~VvVIGgG~va~d~A~~l~r~G--a~Vtlv~r~~~~~m~----a~~~e~~~a~~eGV~i~~~~~~~~i~ 345 (464)
T PRK12831 279 KVGKKVAVVGGGNVAMDAARTALRLG--AEVHIVYRRSEEELP----ARVEEVHHAKEEGVIFDLLTNPVEIL 345 (464)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHcC--CEEEEEeecCcccCC----CCHHHHHHHHHcCCEEEecccceEEE
Confidence 45789999999997776654 34444 345444443332222 12233566778899999988877774
No 260
>PRK07831 short chain dehydrogenase; Provisional
Probab=35.62 E-value=1.3e+02 Score=25.26 Aligned_cols=81 Identities=16% Similarity=0.137 Sum_probs=43.5
Q ss_pred CCCeEEEEecCChhHHHHHHHHh-CCCCeEEEeccCCHHHHHhhcchHHHHHHHHHh-CCC--EEEEeeeccccCCCccc
Q 044601 14 SKQRILLVGEGDFSFSLCLAREF-GFAHNMVATCLDTQETIANKYSNAVDNVRELEE-RGC--LVFYGVDAMQMSQHFFL 89 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~-~g~--~V~~gVDAt~L~~~~~l 89 (213)
+++++|+.|=..+..-.++++.+ ..+.+|+++..+. +.+ ....+.|++ .|. ...+.+|.++......+
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 87 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHE-RRL-------GETADELAAELGLGRVEAVVCDVTSEAQVDAL 87 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCH-HHH-------HHHHHHHHHhcCCceEEEEEccCCCHHHHHHH
Confidence 36899999974333444444433 1245788776542 211 222344444 342 33677888876533211
Q ss_pred ------cCCcccEEEEcCC
Q 044601 90 ------RTHKFDRVIYNFP 102 (213)
Q Consensus 90 ------~~~~FDrIiFNFP 102 (213)
.....|.||.|--
T Consensus 88 ~~~~~~~~g~id~li~~ag 106 (262)
T PRK07831 88 IDAAVERLGRLDVLVNNAG 106 (262)
T ss_pred HHHHHHHcCCCCEEEECCC
Confidence 1246798888753
No 261
>PRK05650 short chain dehydrogenase; Provisional
Probab=35.58 E-value=1.2e+02 Score=25.62 Aligned_cols=78 Identities=15% Similarity=0.232 Sum_probs=42.9
Q ss_pred CeEEEEecCChhHHHHHHHHh-CCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCE-EEEeeeccccCCCccc----
Q 044601 16 QRILLVGEGDFSFSLCLAREF-GFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCL-VFYGVDAMQMSQHFFL---- 89 (213)
Q Consensus 16 ~~ILlVGEGnFSFS~aLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~-V~~gVDAt~L~~~~~l---- 89 (213)
++||+.|=.. .-..+|++.+ ..+..|+++..+.+ . ...-+++|+..|.. .....|.++......+
T Consensus 1 ~~vlVtGasg-gIG~~la~~l~~~g~~V~~~~r~~~-~-------~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i 71 (270)
T PRK05650 1 NRVMITGAAS-GLGRAIALRWAREGWRLALADVNEE-G-------GEETLKLLREAGGDGFYQRCDVRDYSQLTALAQAC 71 (270)
T ss_pred CEEEEecCCC-hHHHHHHHHHHHCCCEEEEEeCCHH-H-------HHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHH
Confidence 3688888544 2223333332 23568888876532 1 22334556555543 3567788876543221
Q ss_pred --cCCcccEEEEcCC
Q 044601 90 --RTHKFDRVIYNFP 102 (213)
Q Consensus 90 --~~~~FDrIiFNFP 102 (213)
....+|.||.|-.
T Consensus 72 ~~~~~~id~lI~~ag 86 (270)
T PRK05650 72 EEKWGGIDVIVNNAG 86 (270)
T ss_pred HHHcCCCCEEEECCC
Confidence 1246899988854
No 262
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=35.49 E-value=34 Score=31.42 Aligned_cols=35 Identities=31% Similarity=0.330 Sum_probs=28.8
Q ss_pred chHHHHhhHHH--HHHHHHHHHhhcccCCCeEEEEecc
Q 044601 112 SYCQIQLNKEL--VKGFLRNAKLLLKEENGEIHVTHKE 147 (213)
Q Consensus 112 ~~~~i~~n~~L--l~~Ff~Sa~~~L~~~~G~ihvTl~~ 147 (213)
|.-.|.-|++| |..++.+|..+|+ ++|++.|-..-
T Consensus 210 QAiRI~VNdEL~~L~~~L~~a~~~L~-~gGRl~VIsFH 246 (314)
T COG0275 210 QAIRIYVNDELEELEEALEAALDLLK-PGGRLAVISFH 246 (314)
T ss_pred hhheeeehhHHHHHHHHHHHHHHhhC-CCcEEEEEEec
Confidence 44457779999 9999999999998 99997776543
No 263
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=35.40 E-value=40 Score=28.19 Aligned_cols=33 Identities=18% Similarity=0.338 Sum_probs=21.1
Q ss_pred CCeEEEEecCChhHHHHH---HHHhCCCCeEEEeccCC
Q 044601 15 KQRILLVGEGDFSFSLCL---AREFGFAHNMVATCLDT 49 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aL---a~~~~~~~~l~ATs~ds 49 (213)
...|.++|||.|-++..- |.++ ..+|+--.++.
T Consensus 67 ~~vv~i~GDGsf~m~~~eL~Ta~~~--~lpv~ivV~NN 102 (205)
T cd02003 67 REVYVLVGDGSYLMLHSEIVTAVQE--GLKIIIVLFDN 102 (205)
T ss_pred CeEEEEEccchhhccHHHHHHHHHc--CCCCEEEEEEC
Confidence 457889999988886532 3334 34566666664
No 264
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=35.35 E-value=1.9e+02 Score=26.64 Aligned_cols=47 Identities=21% Similarity=0.372 Sum_probs=36.0
Q ss_pred CCCCCCeEEEEecC-C-hhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcc
Q 044601 11 HYSSKQRILLVGEG-D-FSFSLCLAREFGFAHNMVATCLDTQETIANKYS 58 (213)
Q Consensus 11 ~y~~~~~ILlVGEG-n-FSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~ 58 (213)
.-+++++||+.|=+ . =+|+.-||++.+ ...++|+|-++..++.+++.
T Consensus 154 ~~~~g~~vLv~ggsggVG~~aiQlAk~~~-~~~v~t~~s~e~~~l~k~lG 202 (347)
T KOG1198|consen 154 KLSKGKSVLVLGGSGGVGTAAIQLAKHAG-AIKVVTACSKEKLELVKKLG 202 (347)
T ss_pred ccCCCCeEEEEeCCcHHHHHHHHHHHhcC-CcEEEEEcccchHHHHHHcC
Confidence 44567899998865 2 467788899987 78999999887777777655
No 265
>PRK07904 short chain dehydrogenase; Provisional
Probab=35.33 E-value=1.6e+02 Score=24.80 Aligned_cols=85 Identities=21% Similarity=0.315 Sum_probs=49.9
Q ss_pred CCCCeEEEEecCChhHHHHHHHHh-CC-CCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCC-EE-EEeeeccccCCCcc
Q 044601 13 SSKQRILLVGEGDFSFSLCLAREF-GF-AHNMVATCLDTQETIANKYSNAVDNVRELEERGC-LV-FYGVDAMQMSQHFF 88 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~aLa~~~-~~-~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~V-~~gVDAt~L~~~~~ 88 (213)
-+.++||+.|=.. -.-++|++++ .. +.+|++++.+.... ....+++|+..|. .| .+..|+++......
T Consensus 6 ~~~~~vlItGas~-giG~~la~~l~~~gg~~V~~~~r~~~~~-------~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~ 77 (253)
T PRK07904 6 GNPQTILLLGGTS-EIGLAICERYLKNAPARVVLAALPDDPR-------RDAAVAQMKAAGASSVEVIDFDALDTDSHPK 77 (253)
T ss_pred CCCcEEEEEcCCc-HHHHHHHHHHHhcCCCeEEEEeCCcchh-------HHHHHHHHHhcCCCceEEEEecCCChHHHHH
Confidence 3567899999755 3445555543 12 46899988764321 2233455665553 33 55788887554221
Q ss_pred -----ccCCcccEEEEcCCcCC
Q 044601 89 -----LRTHKFDRVIYNFPHVG 105 (213)
Q Consensus 89 -----l~~~~FDrIiFNFPH~G 105 (213)
......|.+|.|....+
T Consensus 78 ~~~~~~~~g~id~li~~ag~~~ 99 (253)
T PRK07904 78 VIDAAFAGGDVDVAIVAFGLLG 99 (253)
T ss_pred HHHHHHhcCCCCEEEEeeecCC
Confidence 11247999998876544
No 266
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=35.27 E-value=2.4e+02 Score=25.94 Aligned_cols=88 Identities=20% Similarity=0.221 Sum_probs=46.2
Q ss_pred cccCCCCCCeEEEEecCChhHHHHHHHHh-CCCCeEEEeccCCHHHHHhhcchHHHHHHHHHh-CCCEEEEeeeccccCC
Q 044601 8 WSNHYSSKQRILLVGEGDFSFSLCLAREF-GFAHNMVATCLDTQETIANKYSNAVDNVRELEE-RGCLVFYGVDAMQMSQ 85 (213)
Q Consensus 8 ~~~~y~~~~~ILlVGEGnFSFS~aLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~-~g~~V~~gVDAt~L~~ 85 (213)
|..+..++++||++|=..|= -..|++.+ ..+..|++++.+... +..+ .... +.++. .++.++ ..|+++...
T Consensus 53 ~~~~~~~~~kVLVtGatG~I-G~~l~~~Ll~~G~~V~~l~R~~~~-~~~~--~~~~--~~~~~~~~v~~v-~~Dl~d~~~ 125 (390)
T PLN02657 53 FRSKEPKDVTVLVVGATGYI-GKFVVRELVRRGYNVVAVAREKSG-IRGK--NGKE--DTKKELPGAEVV-FGDVTDADS 125 (390)
T ss_pred ccccCCCCCEEEEECCCcHH-HHHHHHHHHHCCCEEEEEEechhh-cccc--chhh--HHhhhcCCceEE-EeeCCCHHH
Confidence 66777888999999975553 22222222 235789998876421 1110 0000 01111 255544 468877543
Q ss_pred Ccc-ccCC--cccEEEEcCC
Q 044601 86 HFF-LRTH--KFDRVIYNFP 102 (213)
Q Consensus 86 ~~~-l~~~--~FDrIiFNFP 102 (213)
... ++.. .+|.||.+-.
T Consensus 126 l~~~~~~~~~~~D~Vi~~aa 145 (390)
T PLN02657 126 LRKVLFSEGDPVDVVVSCLA 145 (390)
T ss_pred HHHHHHHhCCCCcEEEECCc
Confidence 322 1221 6899887653
No 267
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=35.18 E-value=92 Score=29.05 Aligned_cols=69 Identities=19% Similarity=0.258 Sum_probs=35.5
Q ss_pred CCCCCeEEEEecCChhHHHHH-HHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCC
Q 044601 12 YSSKQRILLVGEGDFSFSLCL-AREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQ 85 (213)
Q Consensus 12 y~~~~~ILlVGEGnFSFS~aL-a~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~ 85 (213)
+-.++|+.++||.+..++++= +..+|-....++|..++.. ..++. ..+..+......++..-|..++.+
T Consensus 296 ~l~gk~v~i~~~~~~~~~l~~~L~e~G~~v~~v~~~~~~~~-~~~~~----~~~~~~~~~~~~~v~~~d~~el~~ 365 (428)
T cd01965 296 YLGGKRVAIAGDPDLLLGLSRFLLEMGAEPVAAVTGTDNPP-FEKRM----ELLASLEGIPAEVVFVGDLWDLES 365 (428)
T ss_pred HhcCCEEEEEcChHHHHHHHHHHHHcCCcceEEEEcCCCch-hHHHH----HHhhhhcCCCceEEECCCHHHHHH
Confidence 456899999999986654421 2344534344444444322 11211 112223334456666666666654
No 268
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=35.10 E-value=16 Score=26.73 Aligned_cols=37 Identities=24% Similarity=0.067 Sum_probs=24.0
Q ss_pred CCcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEE
Q 044601 91 THKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHV 143 (213)
Q Consensus 91 ~~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihv 143 (213)
..+||.|+.+=+|... -+...|+.+.+.|+ ++|-|.+
T Consensus 67 ~~~~dli~iDg~H~~~---------------~~~~dl~~~~~~l~-~ggviv~ 103 (106)
T PF13578_consen 67 DGPIDLIFIDGDHSYE---------------AVLRDLENALPRLA-PGGVIVF 103 (106)
T ss_dssp H--EEEEEEES---HH---------------HHHHHHHHHGGGEE-EEEEEEE
T ss_pred CCCEEEEEECCCCCHH---------------HHHHHHHHHHHHcC-CCeEEEE
Confidence 5789999999888762 23466888889997 8886653
No 269
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=35.03 E-value=1.9e+02 Score=23.75 Aligned_cols=78 Identities=9% Similarity=0.075 Sum_probs=42.1
Q ss_pred CeEEEEecCChhHHHHHHHHhC-CCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCC-EEEEeeeccccCCCccc----
Q 044601 16 QRILLVGEGDFSFSLCLAREFG-FAHNMVATCLDTQETIANKYSNAVDNVRELEERGC-LVFYGVDAMQMSQHFFL---- 89 (213)
Q Consensus 16 ~~ILlVGEGnFSFS~aLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~V~~gVDAt~L~~~~~l---- 89 (213)
++||+.|=+ =..-.+|++.+- .+..++.+.-.+.+.+ ....+.++..+. ...+.+|.++..+...+
T Consensus 3 k~ilItGas-~giG~~la~~l~~~g~~v~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 74 (248)
T PRK06947 3 KVVLITGAS-RGIGRATAVLAAARGWSVGINYARDAAAA-------EETADAVRAAGGRACVVAGDVANEADVIAMFDAV 74 (248)
T ss_pred cEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCCHHHH-------HHHHHHHHhcCCcEEEEEeccCCHHHHHHHHHHH
Confidence 578999944 344555555441 2456665543333222 223444555554 34677888876543211
Q ss_pred --cCCcccEEEEcC
Q 044601 90 --RTHKFDRVIYNF 101 (213)
Q Consensus 90 --~~~~FDrIiFNF 101 (213)
...+.|.||.|=
T Consensus 75 ~~~~~~id~li~~a 88 (248)
T PRK06947 75 QSAFGRLDALVNNA 88 (248)
T ss_pred HHhcCCCCEEEECC
Confidence 124689998775
No 270
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=34.93 E-value=95 Score=30.69 Aligned_cols=66 Identities=17% Similarity=0.320 Sum_probs=40.0
Q ss_pred CCCeEEEEecCChhHHHHH-HHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccC
Q 044601 14 SKQRILLVGEGDFSFSLCL-AREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMS 84 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aL-a~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~ 84 (213)
.+++|++||-||-..-.|- +..++ +.+|+.-...+... .|....-++.|++.|+.++++...+.+.
T Consensus 467 ~gk~VvVIGgG~~a~d~A~~a~r~g-a~~Vt~i~~~~~~~----~~~~~~e~~~~~~~Gv~~~~~~~~~~i~ 533 (654)
T PRK12769 467 AGLNVVVLGGGDTAMDCVRTALRHG-ASNVTCAYRRDEAN----MPGSKKEVKNAREEGANFEFNVQPVALE 533 (654)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcC-CCeEEEeEecCCCC----CCCCHHHHHHHHHcCCeEEeccCcEEEE
Confidence 4689999999987655543 34444 23444322222211 2223344678899999999987777663
No 271
>PRK04148 hypothetical protein; Provisional
Probab=34.80 E-value=1.7e+02 Score=23.50 Aligned_cols=31 Identities=16% Similarity=0.339 Sum_probs=22.6
Q ss_pred CCeEEEEecCChh--HHHHHHHHhCCCCeEEEeccCC
Q 044601 15 KQRILLVGEGDFS--FSLCLAREFGFAHNMVATCLDT 49 (213)
Q Consensus 15 ~~~ILlVGEGnFS--FS~aLa~~~~~~~~l~ATs~ds 49 (213)
+.+||-||=| |- +|..|++ . +..|+|+=.+.
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~-~--G~~ViaIDi~~ 49 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKE-S--GFDVIVIDINE 49 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHH-C--CCEEEEEECCH
Confidence 4789999999 64 5555663 2 57899987664
No 272
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=34.67 E-value=1.3e+02 Score=23.07 Aligned_cols=75 Identities=15% Similarity=0.232 Sum_probs=42.5
Q ss_pred CeEEEEecCChh---HHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCC
Q 044601 16 QRILLVGEGDFS---FSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTH 92 (213)
Q Consensus 16 ~~ILlVGEGnFS---FS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~ 92 (213)
++||+|=-||-. -|-+|++++.. .++.+-|-=... ..-. ..-++.|++.|+.+- +-=+..|.... ..
T Consensus 1 ~~vlfvC~~N~cRS~mAEa~~~~~~~-~~~~v~SAG~~~--~~~~---p~a~~~l~e~Gid~~-~~~s~~l~~~~---~~ 70 (126)
T TIGR02689 1 KKVMFVCKRNSCRSQMAEGFAKTLGA-GNIAVTSAGLEV--SRVH---PTAIEVMSEIGIDIS-GQTSKPLENFH---PE 70 (126)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHhcC-CCEEEEcCcCCC--CCCC---HHHHHHHHHhCCCcc-cCccccCChhH---hc
Confidence 479999999998 88899998753 344443333221 1111 234778888776541 22233332211 24
Q ss_pred cccEEEEc
Q 044601 93 KFDRVIYN 100 (213)
Q Consensus 93 ~FDrIiFN 100 (213)
.||.||-.
T Consensus 71 ~~D~iitm 78 (126)
T TIGR02689 71 DYDVVISL 78 (126)
T ss_pred CCCEEEEe
Confidence 57777753
No 273
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=34.63 E-value=41 Score=32.60 Aligned_cols=34 Identities=21% Similarity=0.536 Sum_probs=22.1
Q ss_pred CCCeEEEEecCChhHH---HHHHHHhCCCCeEEEeccCC
Q 044601 14 SKQRILLVGEGDFSFS---LCLAREFGFAHNMVATCLDT 49 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS---~aLa~~~~~~~~l~ATs~ds 49 (213)
...-|+++|||.|.|+ +.-+..++. +|+--.++.
T Consensus 442 ~~~vv~i~GDGsf~m~~~eL~ta~r~~l--pi~ivV~NN 478 (571)
T PRK07710 442 DETVVAIVGDGGFQMTLQELSVIKELSL--PVKVVILNN 478 (571)
T ss_pred CCcEEEEEcchHHhhhHHHHHHHHHhCC--CeEEEEEEC
Confidence 3578899999999998 344555553 444445553
No 274
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=34.56 E-value=55 Score=29.65 Aligned_cols=33 Identities=33% Similarity=0.407 Sum_probs=27.4
Q ss_pred chHHHHhhHHH--HHHHHHHHHhhcccCCCeEEEEe
Q 044601 112 SYCQIQLNKEL--VKGFLRNAKLLLKEENGEIHVTH 145 (213)
Q Consensus 112 ~~~~i~~n~~L--l~~Ff~Sa~~~L~~~~G~ihvTl 145 (213)
|.-.|.-|++| |..++..|..+|+ ++|++.|-.
T Consensus 202 QAlRI~VN~El~~L~~~L~~~~~~L~-~gGrl~vis 236 (296)
T PRK00050 202 QALRIEVNDELEELERALEAALDLLK-PGGRLAVIS 236 (296)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhc-CCCEEEEEe
Confidence 45556679988 9999999999998 999976654
No 275
>PRK06139 short chain dehydrogenase; Provisional
Probab=34.53 E-value=1.1e+02 Score=27.53 Aligned_cols=79 Identities=18% Similarity=0.178 Sum_probs=45.2
Q ss_pred CCCeEEEEecCChhHHHHHHHHh-CCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEE-EEeeeccccCCCccc--
Q 044601 14 SKQRILLVGEGDFSFSLCLAREF-GFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLV-FYGVDAMQMSQHFFL-- 89 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V-~~gVDAt~L~~~~~l-- 89 (213)
+++.||+.|=.. ..-+++++.+ ..+.+|+.++.+. +.+ .+-.+++++.|+.+ ...+|.++..+...+
T Consensus 6 ~~k~vlITGAs~-GIG~aia~~la~~G~~Vvl~~R~~-~~l-------~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~ 76 (330)
T PRK06139 6 HGAVVVITGASS-GIGQATAEAFARRGARLVLAARDE-EAL-------QAVAEECRALGAEVLVVPTDVTDADQVKALAT 76 (330)
T ss_pred CCCEEEEcCCCC-HHHHHHHHHHHHCCCEEEEEECCH-HHH-------HHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHH
Confidence 357889988743 2333333332 1256788887652 222 23345666677765 457788876543221
Q ss_pred ----cCCcccEEEEcC
Q 044601 90 ----RTHKFDRVIYNF 101 (213)
Q Consensus 90 ----~~~~FDrIiFNF 101 (213)
.....|.||.|=
T Consensus 77 ~~~~~~g~iD~lVnnA 92 (330)
T PRK06139 77 QAASFGGRIDVWVNNV 92 (330)
T ss_pred HHHHhcCCCCEEEECC
Confidence 125689988873
No 276
>PRK05866 short chain dehydrogenase; Provisional
Probab=34.27 E-value=1.3e+02 Score=26.22 Aligned_cols=78 Identities=21% Similarity=0.189 Sum_probs=43.6
Q ss_pred CCCeEEEEecCChhHHHHHHHHh-CCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCE-EEEeeeccccCCCccc--
Q 044601 14 SKQRILLVGEGDFSFSLCLAREF-GFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCL-VFYGVDAMQMSQHFFL-- 89 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~-V~~gVDAt~L~~~~~l-- 89 (213)
.+++||++|=+.. -.++|++.+ ..+.+|++++.+. +.+ .+..+++++.|+. ..+.+|+++......+
T Consensus 39 ~~k~vlItGasgg-IG~~la~~La~~G~~Vi~~~R~~-~~l-------~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~ 109 (293)
T PRK05866 39 TGKRILLTGASSG-IGEAAAEQFARRGATVVAVARRE-DLL-------DAVADRITRAGGDAMAVPCDLSDLDAVDALVA 109 (293)
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCH-HHH-------HHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence 3578999997542 233333332 1257888887763 222 2234455555544 3667888876533221
Q ss_pred ----cCCcccEEEEc
Q 044601 90 ----RTHKFDRVIYN 100 (213)
Q Consensus 90 ----~~~~FDrIiFN 100 (213)
.....|.||.|
T Consensus 110 ~~~~~~g~id~li~~ 124 (293)
T PRK05866 110 DVEKRIGGVDILINN 124 (293)
T ss_pred HHHHHcCCCCEEEEC
Confidence 12468998877
No 277
>PLN02827 Alcohol dehydrogenase-like
Probab=34.25 E-value=1.8e+02 Score=26.34 Aligned_cols=38 Identities=18% Similarity=0.279 Sum_probs=25.9
Q ss_pred cCCCCCCeEEEEecCChhHH-HHHHHHhCCCCeEEEeccC
Q 044601 10 NHYSSKQRILLVGEGDFSFS-LCLAREFGFAHNMVATCLD 48 (213)
Q Consensus 10 ~~y~~~~~ILlVGEGnFSFS-~aLa~~~~~~~~l~ATs~d 48 (213)
....++++||++|.|-.--. ..+|++.| ...+++|+..
T Consensus 189 ~~~~~g~~VlV~G~G~vG~~~iqlak~~G-~~~vi~~~~~ 227 (378)
T PLN02827 189 ADVSKGSSVVIFGLGTVGLSVAQGAKLRG-ASQIIGVDIN 227 (378)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCC
Confidence 45677899999998876644 34577775 3357776543
No 278
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=34.06 E-value=1.4e+02 Score=27.92 Aligned_cols=89 Identities=19% Similarity=0.223 Sum_probs=58.7
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHh--------------------------------------
Q 044601 14 SKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIAN-------------------------------------- 55 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~-------------------------------------- 55 (213)
++++|..|-+=+.+=|.++|+.++-+ ..+.|.|+|+|.+
T Consensus 31 s~~~Ivava~~s~~~A~~fAq~~~~~---~~k~y~syEeLakd~~vDvVyi~~~~~qH~evv~l~l~~~K~VL~EKPla~ 107 (351)
T KOG2741|consen 31 SNHQIVAVADPSLERAKEFAQRHNIP---NPKAYGSYEELAKDPEVDVVYISTPNPQHYEVVMLALNKGKHVLCEKPLAM 107 (351)
T ss_pred cCcEEEEEecccHHHHHHHHHhcCCC---CCccccCHHHHhcCCCcCEEEeCCCCccHHHHHHHHHHcCCcEEecccccC
Confidence 57899999999888889999888633 5677778777663
Q ss_pred hcchHHHHHHHHHhCCCEEEEeeeccccCCCcccc---------CCcccEEEEcCCcCC
Q 044601 56 KYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLR---------THKFDRVIYNFPHVG 105 (213)
Q Consensus 56 kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~---------~~~FDrIiFNFPH~G 105 (213)
.++++.+.+++-+++|+.++-|+=--.......++ ..+==.|-|+||..+
T Consensus 108 n~~e~~~iveaA~~rgv~~meg~~~R~~P~~~~lke~l~~~~~Gdvk~v~~~~~f~~~~ 166 (351)
T KOG2741|consen 108 NVAEAEEIVEAAEARGVFFMEGLWWRFFPRYAKLKELLSSGVLGDVKSVEVEFGFPFPE 166 (351)
T ss_pred CHHHHHHHHHHHHHcCcEEEeeeeeecCcHHHHHHHHHhccccccceEEEEecCCCcch
Confidence 23356777888889998777555332222111111 122235688888885
No 279
>PRK06198 short chain dehydrogenase; Provisional
Probab=34.04 E-value=1.2e+02 Score=25.11 Aligned_cols=78 Identities=17% Similarity=0.189 Sum_probs=44.0
Q ss_pred CCCeEEEEecCChhHHHHHHHHh-CCCCe-EEEeccCCHHHHHhhcchHHHHHHHHHhCCCEE-EEeeeccccCCCccc-
Q 044601 14 SKQRILLVGEGDFSFSLCLAREF-GFAHN-MVATCLDTQETIANKYSNAVDNVRELEERGCLV-FYGVDAMQMSQHFFL- 89 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa~~~-~~~~~-l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V-~~gVDAt~L~~~~~l- 89 (213)
++++||++|=... -..+|++.+ ..+.. |++++.+.. .+ ...++.|++.+..+ .+.+|.++......+
T Consensus 5 ~~k~vlItGa~g~-iG~~la~~l~~~G~~~V~~~~r~~~-~~-------~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~ 75 (260)
T PRK06198 5 DGKVALVTGGTQG-LGAAIARAFAERGAAGLVICGRNAE-KG-------EAQAAELEALGAKAVFVQADLSDVEDCRRVV 75 (260)
T ss_pred CCcEEEEeCCCch-HHHHHHHHHHHCCCCeEEEEcCCHH-HH-------HHHHHHHHhcCCeEEEEEccCCCHHHHHHHH
Confidence 3578999996543 444444443 12345 888876532 11 23455666667655 567899876543221
Q ss_pred -----cCCcccEEEEc
Q 044601 90 -----RTHKFDRVIYN 100 (213)
Q Consensus 90 -----~~~~FDrIiFN 100 (213)
+....|.||.|
T Consensus 76 ~~~~~~~g~id~li~~ 91 (260)
T PRK06198 76 AAADEAFGRLDALVNA 91 (260)
T ss_pred HHHHHHhCCCCEEEEC
Confidence 11357888766
No 280
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=34.00 E-value=29 Score=31.96 Aligned_cols=84 Identities=19% Similarity=0.345 Sum_probs=49.1
Q ss_pred CCCCCCeEEEEecCChhHHHHHHHHh-CCCCeEEEe-ccCCHHHHHhhcch--HHHHHHHHHhCCCEEEEeeeccccCCC
Q 044601 11 HYSSKQRILLVGEGDFSFSLCLAREF-GFAHNMVAT-CLDTQETIANKYSN--AVDNVRELEERGCLVFYGVDAMQMSQH 86 (213)
Q Consensus 11 ~y~~~~~ILlVGEGnFSFS~aLa~~~-~~~~~l~AT-s~ds~~~l~~kY~~--a~~ni~~L~~~g~~V~~gVDAt~L~~~ 86 (213)
.|+..+--|++||| | .|.+.+ ..+-.+|-| |-|..-.-.++|.+ ...-+++|+..|+.+.-+ |.--|+..
T Consensus 171 gy~~~~v~l~iGDG-~----~fl~~~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~-ec~wl~~~ 244 (337)
T KOG1562|consen 171 GYEGKKVKLLIGDG-F----LFLEDLKENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG-ECMWLHLD 244 (337)
T ss_pred ccCCCceEEEeccH-H----HHHHHhccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec-ceehHHHH
Confidence 37888888899988 3 334433 123344443 33432222233322 455688999988888766 66655544
Q ss_pred ccccCCcccEEEEc
Q 044601 87 FFLRTHKFDRVIYN 100 (213)
Q Consensus 87 ~~l~~~~FDrIiFN 100 (213)
..-...+||++||.
T Consensus 245 ~i~e~r~~~~~~f~ 258 (337)
T KOG1562|consen 245 YIKEGRSFCYVIFD 258 (337)
T ss_pred HHHHHHHhHHHhcC
Confidence 43345678888775
No 281
>PRK08628 short chain dehydrogenase; Provisional
Probab=33.96 E-value=2.7e+02 Score=23.01 Aligned_cols=78 Identities=13% Similarity=0.060 Sum_probs=41.8
Q ss_pred CCeEEEEecCChhHHHHHHHHh-CCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCE-EEEeeeccccCCCccc-c-
Q 044601 15 KQRILLVGEGDFSFSLCLAREF-GFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCL-VFYGVDAMQMSQHFFL-R- 90 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~-V~~gVDAt~L~~~~~l-~- 90 (213)
+++||+.|=+. .-..+|++.+ ..+.+++.++.+... + .-++.|++.|.. ..+.+|.++......+ .
T Consensus 7 ~~~ilItGasg-giG~~la~~l~~~G~~v~~~~r~~~~-~--------~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 76 (258)
T PRK08628 7 DKVVIVTGGAS-GIGAAISLRLAEEGAIPVIFGRSAPD-D--------EFAEELRALQPRAEFVQVDLTDDAQCRDAVEQ 76 (258)
T ss_pred CCEEEEeCCCC-hHHHHHHHHHHHcCCcEEEEcCChhh-H--------HHHHHHHhcCCceEEEEccCCCHHHHHHHHHH
Confidence 56889988443 2444444443 124567777665321 1 223455554543 4667888876533221 1
Q ss_pred ----CCcccEEEEcCC
Q 044601 91 ----THKFDRVIYNFP 102 (213)
Q Consensus 91 ----~~~FDrIiFNFP 102 (213)
....|.||.|-.
T Consensus 77 ~~~~~~~id~vi~~ag 92 (258)
T PRK08628 77 TVAKFGRIDGLVNNAG 92 (258)
T ss_pred HHHhcCCCCEEEECCc
Confidence 246798777643
No 282
>PRK06114 short chain dehydrogenase; Provisional
Probab=33.75 E-value=1.8e+02 Score=24.29 Aligned_cols=81 Identities=11% Similarity=0.071 Sum_probs=45.2
Q ss_pred CCCeEEEEecCChhHHHHHHHHhC-CCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEE-EEeeeccccCCCccc--
Q 044601 14 SKQRILLVGEGDFSFSLCLAREFG-FAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLV-FYGVDAMQMSQHFFL-- 89 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V-~~gVDAt~L~~~~~l-- 89 (213)
+++.+|+.|=+.. --.++++.+. .+.+++.+...+.+. ....++.|+..|.++ .+.+|.++......+
T Consensus 7 ~~k~~lVtG~s~g-IG~~ia~~l~~~G~~v~~~~r~~~~~-------~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~ 78 (254)
T PRK06114 7 DGQVAFVTGAGSG-IGQRIAIGLAQAGADVALFDLRTDDG-------LAETAEHIEAAGRRAIQIAADVTSKADLRAAVA 78 (254)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCcchH-------HHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence 3578898885532 3344444331 246788776654321 223355666666443 567888876532211
Q ss_pred ----cCCcccEEEEcCC
Q 044601 90 ----RTHKFDRVIYNFP 102 (213)
Q Consensus 90 ----~~~~FDrIiFNFP 102 (213)
...+.|.||.|=-
T Consensus 79 ~~~~~~g~id~li~~ag 95 (254)
T PRK06114 79 RTEAELGALTLAVNAAG 95 (254)
T ss_pred HHHHHcCCCCEEEECCC
Confidence 1256899988753
No 283
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=33.45 E-value=1.7e+02 Score=29.09 Aligned_cols=55 Identities=31% Similarity=0.479 Sum_probs=36.7
Q ss_pred CCeEEEEecCChhHHHHHHHHhC-CCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccC
Q 044601 15 KQRILLVGEGDFSFSLCLAREFG-FAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMS 84 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~ 84 (213)
.++|+++|=|.+--.. ++.+. .+..+++--.| .+.++.+++.|..|+|| |+|+.+
T Consensus 400 ~~~vII~G~Gr~G~~v--a~~L~~~g~~vvvID~d------------~~~v~~~~~~g~~v~~G-Dat~~~ 455 (621)
T PRK03562 400 QPRVIIAGFGRFGQIV--GRLLLSSGVKMTVLDHD------------PDHIETLRKFGMKVFYG-DATRMD 455 (621)
T ss_pred cCcEEEEecChHHHHH--HHHHHhCCCCEEEEECC------------HHHHHHHHhcCCeEEEE-eCCCHH
Confidence 4799999999877654 44432 23455544333 23467777788888888 888875
No 284
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=33.39 E-value=59 Score=29.62 Aligned_cols=34 Identities=26% Similarity=0.311 Sum_probs=28.7
Q ss_pred chHHHHhhHHH--HHHHHHHHHhhcccCCCeEEEEec
Q 044601 112 SYCQIQLNKEL--VKGFLRNAKLLLKEENGEIHVTHK 146 (213)
Q Consensus 112 ~~~~i~~n~~L--l~~Ff~Sa~~~L~~~~G~ihvTl~ 146 (213)
|.-.|.-|.+| |..++..|..+|+ ++|++.|-..
T Consensus 206 QALRI~VN~EL~~L~~~L~~~~~~L~-~gGrl~VISf 241 (305)
T TIGR00006 206 QAIRIYVNDELEELEEALQFAPNLLA-PGGRLSIISF 241 (305)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhc-CCCEEEEEec
Confidence 55667789999 9999999999998 9999777643
No 285
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=33.29 E-value=1e+02 Score=28.88 Aligned_cols=71 Identities=24% Similarity=0.468 Sum_probs=49.3
Q ss_pred CCCCCeEEEEecCChhHHHHH-HHHhCCCCeEEE-------------------eccCC--HHHHHhhcc-h---------
Q 044601 12 YSSKQRILLVGEGDFSFSLCL-AREFGFAHNMVA-------------------TCLDT--QETIANKYS-N--------- 59 (213)
Q Consensus 12 y~~~~~ILlVGEGnFSFS~aL-a~~~~~~~~l~A-------------------Ts~ds--~~~l~~kY~-~--------- 59 (213)
.....||||+|-|-++=-.++ ++.+| ..++| +-+|. ...+.+++. +
T Consensus 9 ~~~a~kvmLLGSGELGKEvaIe~QRLG--~eViAVDrY~~APAmqVAhrs~Vi~MlD~~al~avv~rekPd~IVpEiEAI 86 (394)
T COG0027 9 RPQATKVMLLGSGELGKEVAIEAQRLG--VEVIAVDRYANAPAMQVAHRSYVIDMLDGDALRAVVEREKPDYIVPEIEAI 86 (394)
T ss_pred CCCCeEEEEecCCccchHHHHHHHhcC--CEEEEecCcCCChhhhhhhheeeeeccCHHHHHHHHHhhCCCeeeehhhhh
Confidence 345688999999999988888 45554 33333 44442 234555543 2
Q ss_pred HHHHHHHHHhCCCEEEEeeeccccC
Q 044601 60 AVDNVRELEERGCLVFYGVDAMQMS 84 (213)
Q Consensus 60 a~~ni~~L~~~g~~V~~gVDAt~L~ 84 (213)
+.+-+.+|++.|-+|+-+-.||+|.
T Consensus 87 ~td~L~elE~~G~~VVP~ArAt~lt 111 (394)
T COG0027 87 ATDALVELEEEGYTVVPNARATKLT 111 (394)
T ss_pred hHHHHHHHHhCCceEccchHHHHhh
Confidence 2346788899999999999999986
No 286
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=33.26 E-value=2.9e+02 Score=25.85 Aligned_cols=40 Identities=18% Similarity=0.246 Sum_probs=30.1
Q ss_pred CcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEecc
Q 044601 92 HKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKE 147 (213)
Q Consensus 92 ~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~ 147 (213)
..+|.|++=.|-. ..++...+......|. ++++|.+.=+.
T Consensus 105 ~~~d~vl~~~PK~---------------~~~l~~~l~~l~~~l~-~~~~ii~g~~~ 144 (378)
T PRK15001 105 QQPGVVLIKVPKT---------------LALLEQQLRALRKVVT-SDTRIIAGAKA 144 (378)
T ss_pred CCCCEEEEEeCCC---------------HHHHHHHHHHHHhhCC-CCCEEEEEEec
Confidence 4599999988844 3667777788888997 88888766544
No 287
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=33.22 E-value=2.4e+02 Score=24.39 Aligned_cols=76 Identities=22% Similarity=0.293 Sum_probs=49.4
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCC
Q 044601 13 SSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTH 92 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~ 92 (213)
.++++||=||=|.=.++..|++. +..++|--.|. .+.+ .+.+++.. ..++.+ ..-|+.++. -.
T Consensus 28 ~~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~--~~~~---~l~~~~~~--~~~v~i-i~~D~~~~~------~~ 90 (258)
T PRK14896 28 TDGDPVLEIGPGKGALTDELAKR---AKKVYAIELDP--RLAE---FLRDDEIA--AGNVEI-IEGDALKVD------LP 90 (258)
T ss_pred CCcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCH--HHHH---HHHHHhcc--CCCEEE-EEeccccCC------ch
Confidence 45789999999999999999987 24777766663 2322 23333332 123444 445776653 12
Q ss_pred cccEEEEcCCcCC
Q 044601 93 KFDRVIYNFPHVG 105 (213)
Q Consensus 93 ~FDrIiFNFPH~G 105 (213)
.||.||-|-|.--
T Consensus 91 ~~d~Vv~NlPy~i 103 (258)
T PRK14896 91 EFNKVVSNLPYQI 103 (258)
T ss_pred hceEEEEcCCccc
Confidence 4799999999753
No 288
>PLN00016 RNA-binding protein; Provisional
Probab=33.07 E-value=1.3e+02 Score=27.22 Aligned_cols=79 Identities=22% Similarity=0.336 Sum_probs=43.2
Q ss_pred CCeEEEE----ec-C--ChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCc
Q 044601 15 KQRILLV----GE-G--DFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHF 87 (213)
Q Consensus 15 ~~~ILlV----GE-G--nFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~ 87 (213)
.++||++ |= | ....+..|++ .+..|++.+.+....-.-+. ........|...|++++.+ |.+++....
T Consensus 52 ~~~VLVt~~~~GatG~iG~~lv~~L~~---~G~~V~~l~R~~~~~~~~~~-~~~~~~~~l~~~~v~~v~~-D~~d~~~~~ 126 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIGFYLAKELVK---AGHEVTLFTRGKEPSQKMKK-EPFSRFSELSSAGVKTVWG-DPADVKSKV 126 (378)
T ss_pred cceEEEEeccCCCceeEhHHHHHHHHH---CCCEEEEEecCCcchhhhcc-CchhhhhHhhhcCceEEEe-cHHHHHhhh
Confidence 3689999 75 4 2334444443 35788888776432111111 1123345666667766544 777654332
Q ss_pred cccCCcccEEEEc
Q 044601 88 FLRTHKFDRVIYN 100 (213)
Q Consensus 88 ~l~~~~FDrIiFN 100 (213)
....+|.||-+
T Consensus 127 --~~~~~d~Vi~~ 137 (378)
T PLN00016 127 --AGAGFDVVYDN 137 (378)
T ss_pred --ccCCccEEEeC
Confidence 34568988743
No 289
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=32.77 E-value=1.1e+02 Score=28.24 Aligned_cols=83 Identities=16% Similarity=0.205 Sum_probs=45.7
Q ss_pred CeEEEEecCChh--HHHHHHHHhC-----------CCCeEEEeccCCHHHHHhhcch--HHHHHHHHHhCCCEEEEeeec
Q 044601 16 QRILLVGEGDFS--FSLCLAREFG-----------FAHNMVATCLDTQETIANKYSN--AVDNVRELEERGCLVFYGVDA 80 (213)
Q Consensus 16 ~~ILlVGEGnFS--FS~aLa~~~~-----------~~~~l~ATs~ds~~~l~~kY~~--a~~ni~~L~~~g~~V~~gVDA 80 (213)
.+|++||-|.-. ++..|+..+. .+.+|+ -.+..+.++..++. ...-.+.|++.|++|+.+--.
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vt--lv~~~~~ll~~~~~~~~~~~~~~L~~~gV~v~~~~~v 251 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVT--VLEAGSEVLGSFDQALRKYGQRRLRRLGVDIRTKTAV 251 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEE--EEcCCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeE
Confidence 489999999754 4444443220 123332 33333334333332 233468899999999987555
Q ss_pred cccCCCc-ccc---CCcccEEEEc
Q 044601 81 MQMSQHF-FLR---THKFDRVIYN 100 (213)
Q Consensus 81 t~L~~~~-~l~---~~~FDrIiFN 100 (213)
+.+.... .+. ...+|.|||-
T Consensus 252 ~~v~~~~v~~~~g~~i~~d~vi~~ 275 (424)
T PTZ00318 252 KEVLDKEVVLKDGEVIPTGLVVWS 275 (424)
T ss_pred EEEeCCEEEECCCCEEEccEEEEc
Confidence 5543221 111 2358999984
No 290
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=32.45 E-value=47 Score=27.10 Aligned_cols=33 Identities=24% Similarity=0.442 Sum_probs=21.5
Q ss_pred CCeEEEEecCChhHHH-HH--HHHhCCCCeEEEeccCC
Q 044601 15 KQRILLVGEGDFSFSL-CL--AREFGFAHNMVATCLDT 49 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~-aL--a~~~~~~~~l~ATs~ds 49 (213)
...|.++|||.|.++. .| +..+ ..+++--.++.
T Consensus 69 ~~vv~i~GDG~f~~~~~eL~ta~~~--~lpi~ivV~nN 104 (186)
T cd02015 69 KTVICIDGDGSFQMNIQELATAAQY--NLPVKIVILNN 104 (186)
T ss_pred CeEEEEEcccHHhccHHHHHHHHHh--CCCeEEEEEEC
Confidence 4677889999888864 23 3333 35666667775
No 291
>PRK09291 short chain dehydrogenase; Provisional
Probab=32.38 E-value=2e+02 Score=23.77 Aligned_cols=76 Identities=20% Similarity=0.232 Sum_probs=40.8
Q ss_pred CeEEEEecCChhHHHHHHHHh-CCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEE-EEeeeccccCCCccccCCc
Q 044601 16 QRILLVGEGDFSFSLCLAREF-GFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLV-FYGVDAMQMSQHFFLRTHK 93 (213)
Q Consensus 16 ~~ILlVGEGnFSFS~aLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V-~~gVDAt~L~~~~~l~~~~ 93 (213)
++||+.|=+. ..-.++++.+ ..+.++++++.+... .....+.++..+..+ ..-.|.++...........
T Consensus 3 ~~vlVtGasg-~iG~~ia~~l~~~G~~v~~~~r~~~~--------~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 73 (257)
T PRK09291 3 KTILITGAGS-GFGREVALRLARKGHNVIAGVQIAPQ--------VTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWD 73 (257)
T ss_pred CEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEeCCHHH--------HHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCC
Confidence 4788988754 2344445443 236789998876321 111122233334322 3456777654332222346
Q ss_pred ccEEEEc
Q 044601 94 FDRVIYN 100 (213)
Q Consensus 94 FDrIiFN 100 (213)
.|.||.|
T Consensus 74 id~vi~~ 80 (257)
T PRK09291 74 VDVLLNN 80 (257)
T ss_pred CCEEEEC
Confidence 8988887
No 292
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=32.15 E-value=72 Score=26.49 Aligned_cols=105 Identities=23% Similarity=0.309 Sum_probs=55.6
Q ss_pred EecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCC-CEEEEeeeccccCCCccccCCcccEEEE
Q 044601 21 VGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERG-CLVFYGVDAMQMSQHFFLRTHKFDRVIY 99 (213)
Q Consensus 21 VGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g-~~V~~gVDAt~L~~~~~l~~~~FDrIiF 99 (213)
-|=|.+++- ||.| | +..+++--.+ ....+ ....|++.|.... +.|+. -|+.+.-........+||.|..
T Consensus 51 aGSGalGlE-ALSR--G-A~~v~fVE~~--~~a~~---~i~~N~~~l~~~~~~~v~~-~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 51 AGSGALGLE-ALSR--G-AKSVVFVEKN--RKAIK---IIKKNLEKLGLEDKIRVIK-GDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp -TTSHHHHH-HHHT--T--SEEEEEES---HHHHH---HHHHHHHHHT-GGGEEEEE-SSHHHHHHHHHHCTS-EEEEEE
T ss_pred CccCccHHH-HHhc--C-CCeEEEEECC--HHHHH---HHHHHHHHhCCCcceeeec-cCHHHHHHhhcccCCCceEEEE
Confidence 466665554 2332 2 4455554444 22222 3678898888665 54544 4554433222224688999999
Q ss_pred cCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccC
Q 044601 100 NFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEG 148 (213)
Q Consensus 100 NFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~ 148 (213)
+=|-.-.. ...++|..... ..+|+ ++|-|.|-+...
T Consensus 121 DPPY~~~~----------~~~~~l~~l~~--~~~l~-~~~~ii~E~~~~ 156 (183)
T PF03602_consen 121 DPPYAKGL----------YYEELLELLAE--NNLLN-EDGLIIIEHSKK 156 (183)
T ss_dssp --STTSCH----------HHHHHHHHHHH--TTSEE-EEEEEEEEEETT
T ss_pred CCCcccch----------HHHHHHHHHHH--CCCCC-CCEEEEEEecCC
Confidence 97765531 12344444432 57887 899999988554
No 293
>PRK08703 short chain dehydrogenase; Provisional
Probab=32.02 E-value=2.1e+02 Score=23.50 Aligned_cols=78 Identities=15% Similarity=0.215 Sum_probs=42.0
Q ss_pred CCeEEEEecCChhHHHHHHHHhC-CCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCC--CEEEEeeeccccCCC-c-c-
Q 044601 15 KQRILLVGEGDFSFSLCLAREFG-FAHNMVATCLDTQETIANKYSNAVDNVRELEERG--CLVFYGVDAMQMSQH-F-F- 88 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g--~~V~~gVDAt~L~~~-~-~- 88 (213)
+++||+.| |+=..-.+|++.+. .+.+|++++.... . .....++|.+.+ ....+.+|.++.... . .
T Consensus 6 ~k~vlItG-~sggiG~~la~~l~~~g~~V~~~~r~~~-~-------~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~ 76 (239)
T PRK08703 6 DKTILVTG-ASQGLGEQVAKAYAAAGATVILVARHQK-K-------LEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQF 76 (239)
T ss_pred CCEEEEEC-CCCcHHHHHHHHHHHcCCEEEEEeCChH-H-------HHHHHHHHHHcCCCCcceEEeeecccchHHHHHH
Confidence 46899999 55555666665542 3567888876532 1 223345554433 123456676543211 0 0
Q ss_pred ---cc--C-CcccEEEEcC
Q 044601 89 ---LR--T-HKFDRVIYNF 101 (213)
Q Consensus 89 ---l~--~-~~FDrIiFNF 101 (213)
+. . ...|.||.|=
T Consensus 77 ~~~i~~~~~~~id~vi~~a 95 (239)
T PRK08703 77 AATIAEATQGKLDGIVHCA 95 (239)
T ss_pred HHHHHHHhCCCCCEEEEec
Confidence 00 1 4579888874
No 294
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=31.96 E-value=1.7e+02 Score=26.08 Aligned_cols=86 Identities=21% Similarity=0.296 Sum_probs=46.6
Q ss_pred CCCeEEEEecCChh--HHHHHHHHh---CCCCeEEEeccCCHHHHHhhcch--HHHHHHHHHhCCCEEEEeeeccccCCC
Q 044601 14 SKQRILLVGEGDFS--FSLCLAREF---GFAHNMVATCLDTQETIANKYSN--AVDNVRELEERGCLVFYGVDAMQMSQH 86 (213)
Q Consensus 14 ~~~~ILlVGEGnFS--FS~aLa~~~---~~~~~l~ATs~ds~~~l~~kY~~--a~~ni~~L~~~g~~V~~gVDAt~L~~~ 86 (213)
..++|++||-|.=. ++..|++.+ +...+|+-.+- +.+....+. .....+.|++.|++++.+.-.+.+...
T Consensus 144 ~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li~~---~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~ 220 (364)
T TIGR03169 144 GTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIAG---ASLLPGFPAKVRRLVLRLLARRGIEVHEGAPVTRGPDG 220 (364)
T ss_pred CCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEEeC---CcccccCCHHHHHHHHHHHHHCCCEEEeCCeeEEEcCC
Confidence 35799999988544 444444432 21123332211 222222222 233467899999999987666655432
Q ss_pred c-cc---cCCcccEEEEcCC
Q 044601 87 F-FL---RTHKFDRVIYNFP 102 (213)
Q Consensus 87 ~-~l---~~~~FDrIiFNFP 102 (213)
. .+ ....+|.||+--+
T Consensus 221 ~v~~~~g~~i~~D~vi~a~G 240 (364)
T TIGR03169 221 ALILADGRTLPADAILWATG 240 (364)
T ss_pred eEEeCCCCEEecCEEEEccC
Confidence 1 11 1245899987543
No 295
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=31.94 E-value=1.6e+02 Score=28.99 Aligned_cols=74 Identities=22% Similarity=0.371 Sum_probs=47.2
Q ss_pred CCeEEEEecCChhHHHHHHHHhC-CCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCCc
Q 044601 15 KQRILLVGEGDFSFSLCLAREFG-FAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTHK 93 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~~ 93 (213)
.++|+++|=|.+.-. +++.+. .+..+++ .|.. .+.++.+++.|..|+|| |||+.+--....-.+
T Consensus 400 ~~~vII~G~Gr~G~~--va~~L~~~g~~vvv--ID~d----------~~~v~~~~~~g~~v~~G-Dat~~~~L~~agi~~ 464 (601)
T PRK03659 400 KPQVIIVGFGRFGQV--IGRLLMANKMRITV--LERD----------ISAVNLMRKYGYKVYYG-DATQLELLRAAGAEK 464 (601)
T ss_pred cCCEEEecCchHHHH--HHHHHHhCCCCEEE--EECC----------HHHHHHHHhCCCeEEEe-eCCCHHHHHhcCCcc
Confidence 478999999987764 445442 2345544 4432 13466778889999999 999865332223355
Q ss_pred ccEEEEcCCc
Q 044601 94 FDRVIYNFPH 103 (213)
Q Consensus 94 FDrIiFNFPH 103 (213)
.|.||--.|.
T Consensus 465 A~~vv~~~~d 474 (601)
T PRK03659 465 AEAIVITCNE 474 (601)
T ss_pred CCEEEEEeCC
Confidence 6777765544
No 296
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=31.90 E-value=1.9e+02 Score=24.91 Aligned_cols=38 Identities=16% Similarity=0.196 Sum_probs=22.4
Q ss_pred cCCCCCCeEEEEecCChhHH-HHHHHHhCCCCeEEEeccC
Q 044601 10 NHYSSKQRILLVGEGDFSFS-LCLAREFGFAHNMVATCLD 48 (213)
Q Consensus 10 ~~y~~~~~ILlVGEGnFSFS-~aLa~~~~~~~~l~ATs~d 48 (213)
....++++||+.|.|...-+ ..||++.| ...+++|+-.
T Consensus 155 ~~~~~g~~vlI~g~g~vg~~~~~la~~~G-~~~v~~~~~~ 193 (334)
T cd08234 155 LGIKPGDSVLVFGAGPIGLLLAQLLKLNG-ASRVTVAEPN 193 (334)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCC
Confidence 34567899999997644333 33466665 2226666443
No 297
>PRK12828 short chain dehydrogenase; Provisional
Probab=31.76 E-value=1.6e+02 Score=23.71 Aligned_cols=80 Identities=6% Similarity=0.003 Sum_probs=44.9
Q ss_pred CCCeEEEEecCChhHHHHHHHHh-CCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccc---
Q 044601 14 SKQRILLVGEGDFSFSLCLAREF-GFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFL--- 89 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l--- 89 (213)
++++||+.|=.. .-..+|++.+ ..+..|++++.+... ..+.++.|+..++.+ ...|.++..+...+
T Consensus 6 ~~k~vlItGatg-~iG~~la~~l~~~G~~v~~~~r~~~~--------~~~~~~~~~~~~~~~-~~~D~~~~~~~~~~~~~ 75 (239)
T PRK12828 6 QGKVVAITGGFG-GLGRATAAWLAARGARVALIGRGAAP--------LSQTLPGVPADALRI-GGIDLVDPQAARRAVDE 75 (239)
T ss_pred CCCEEEEECCCC-cHhHHHHHHHHHCCCeEEEEeCChHh--------HHHHHHHHhhcCceE-EEeecCCHHHHHHHHHH
Confidence 357899998655 2234444433 125678888876421 122344555556654 45888775533211
Q ss_pred ---cCCcccEEEEcCCc
Q 044601 90 ---RTHKFDRVIYNFPH 103 (213)
Q Consensus 90 ---~~~~FDrIiFNFPH 103 (213)
+....|.||++=+.
T Consensus 76 ~~~~~~~~d~vi~~ag~ 92 (239)
T PRK12828 76 VNRQFGRLDALVNIAGA 92 (239)
T ss_pred HHHHhCCcCEEEECCcc
Confidence 12367999987543
No 298
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=31.65 E-value=1.7e+02 Score=26.13 Aligned_cols=65 Identities=15% Similarity=0.178 Sum_probs=38.1
Q ss_pred CCeEEEEecCChhHHHHHH-HHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccC
Q 044601 15 KQRILLVGEGDFSFSLCLA-REFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMS 84 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aLa-~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~ 84 (213)
+++|++||-|+-.--.|.. ...+.. .|+-....+. . ..+.....++.|++.|+.++.+...+.+.
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g~~-~Vtvi~~~~~--~--~~~~~~~~~~~l~~~gi~i~~~~~v~~i~ 237 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLGAE-KVYLAYRRTI--N--EAPAGKYEIERLIARGVEFLELVTPVRII 237 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCC-eEEEEeecch--h--hCCCCHHHHHHHHHcCCEEeeccCceeee
Confidence 5799999999765444432 233322 2333222221 1 12233445788999999999987666654
No 299
>PRK07074 short chain dehydrogenase; Provisional
Probab=31.58 E-value=1.4e+02 Score=24.86 Aligned_cols=77 Identities=19% Similarity=0.201 Sum_probs=41.6
Q ss_pred CCeEEEEecCChhHHHHHHHHh-CCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCcc-cc--
Q 044601 15 KQRILLVGEGDFSFSLCLAREF-GFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFF-LR-- 90 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~-l~-- 90 (213)
+++||+.|=+.+ -..++++++ ..+.+|++++.+.. . .....+.+.. +-...+.+|+++...... +.
T Consensus 2 ~k~ilItGat~~-iG~~la~~L~~~g~~v~~~~r~~~-~-------~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~ 71 (257)
T PRK07074 2 KRTALVTGAAGG-IGQALARRFLAAGDRVLALDIDAA-A-------LAAFADALGD-ARFVPVACDLTDAASLAAALANA 71 (257)
T ss_pred CCEEEEECCcch-HHHHHHHHHHHCCCEEEEEeCCHH-H-------HHHHHHHhcC-CceEEEEecCCCHHHHHHHHHHH
Confidence 357899987552 344444433 12467888876532 1 1122333322 223467899988764321 11
Q ss_pred ---CCcccEEEEcC
Q 044601 91 ---THKFDRVIYNF 101 (213)
Q Consensus 91 ---~~~FDrIiFNF 101 (213)
...+|.||+|=
T Consensus 72 ~~~~~~~d~vi~~a 85 (257)
T PRK07074 72 AAERGPVDVLVANA 85 (257)
T ss_pred HHHcCCCCEEEECC
Confidence 13589888874
No 300
>TIGR00061 L21 ribosomal protein L21. Eubacterial and chloroplast.
Probab=31.58 E-value=20 Score=27.47 Aligned_cols=31 Identities=16% Similarity=0.270 Sum_probs=21.3
Q ss_pred CeEEEEecCChhHHHHHHHHhCCCCeEEEeccCC
Q 044601 16 QRILLVGEGDFSFSLCLAREFGFAHNMVATCLDT 49 (213)
Q Consensus 16 ~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds 49 (213)
++||+||||+++. +.+-+-.+..|.||..+.
T Consensus 35 ~~VLlv~~~~~~~---iG~P~l~~a~V~a~V~~~ 65 (101)
T TIGR00061 35 DKVLMVNKGGDVK---IGKPYVEGAKVVAEVEKH 65 (101)
T ss_pred EEEEEEecCCCeE---ECCeEcCCCEEEEEEEee
Confidence 6899999998765 222222356788888774
No 301
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=31.33 E-value=2e+02 Score=23.95 Aligned_cols=79 Identities=18% Similarity=0.222 Sum_probs=42.6
Q ss_pred CCeEEEEecCChhHHHHHHHHhC-CCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCE-EEEeeeccccCCCccc---
Q 044601 15 KQRILLVGEGDFSFSLCLAREFG-FAHNMVATCLDTQETIANKYSNAVDNVRELEERGCL-VFYGVDAMQMSQHFFL--- 89 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~-V~~gVDAt~L~~~~~l--- 89 (213)
+++||+.|=.. .-..+|++.+. .+.+|+.++.+.. . .....+.++..+.+ ..+.+|.++......+
T Consensus 12 ~k~ilItGa~g-~IG~~la~~l~~~G~~V~~~~r~~~-~-------~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~ 82 (259)
T PRK08213 12 GKTALVTGGSR-GLGLQIAEALGEAGARVVLSARKAE-E-------LEEAAAHLEALGIDALWIAADVADEADIERLAEE 82 (259)
T ss_pred CCEEEEECCCc-hHHHHHHHHHHHcCCEEEEEeCCHH-H-------HHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHH
Confidence 57899998332 22333333321 2457777766532 1 12233445555554 3678888876543111
Q ss_pred ---cCCcccEEEEcCC
Q 044601 90 ---RTHKFDRVIYNFP 102 (213)
Q Consensus 90 ---~~~~FDrIiFNFP 102 (213)
.....|.||.|=.
T Consensus 83 ~~~~~~~id~vi~~ag 98 (259)
T PRK08213 83 TLERFGHVDILVNNAG 98 (259)
T ss_pred HHHHhCCCCEEEECCC
Confidence 1246899998843
No 302
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=31.06 E-value=1.6e+02 Score=25.66 Aligned_cols=51 Identities=22% Similarity=0.387 Sum_probs=31.5
Q ss_pred CCCCCeEEEEecCChhHHH-HHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEE
Q 044601 12 YSSKQRILLVGEGDFSFSL-CLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVF 75 (213)
Q Consensus 12 y~~~~~ILlVGEGnFSFS~-aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~ 75 (213)
..++++||+.|.|-..-.. .+|++.| ...|++|+-+. +.++.++++|+...
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~G-~~~vi~~~~~~------------~~~~~~~~~ga~~~ 212 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARALG-AEDVIGVDPSP------------ERLELAKALGADFV 212 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCH------------HHHHHHHHhCCCEE
Confidence 3458999999988666443 3466765 33488875432 12445566776443
No 303
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=30.27 E-value=2.1e+02 Score=23.62 Aligned_cols=78 Identities=19% Similarity=0.280 Sum_probs=43.4
Q ss_pred CeEEEEecCChhHHHHHHHHhC-CCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCE-EEEeeeccccCCCccc----
Q 044601 16 QRILLVGEGDFSFSLCLAREFG-FAHNMVATCLDTQETIANKYSNAVDNVRELEERGCL-VFYGVDAMQMSQHFFL---- 89 (213)
Q Consensus 16 ~~ILlVGEGnFSFS~aLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~-V~~gVDAt~L~~~~~l---- 89 (213)
+.||+.|=.. ....+|++.+- .+..|+++.....+. ....++.++..+.. ..+.+|.++......+
T Consensus 3 k~vlItG~sg-~iG~~la~~L~~~g~~vi~~~r~~~~~-------~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 74 (256)
T PRK12745 3 PVALVTGGRR-GIGLGIARALAAAGFDLAINDRPDDEE-------LAATQQELRALGVEVIFFPADVADLSAHEAMLDAA 74 (256)
T ss_pred cEEEEeCCCc-hHHHHHHHHHHHCCCEEEEEecCchhH-------HHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHH
Confidence 5688888544 44455554431 245777766443322 23345566655543 4567898875432211
Q ss_pred --cCCcccEEEEcC
Q 044601 90 --RTHKFDRVIYNF 101 (213)
Q Consensus 90 --~~~~FDrIiFNF 101 (213)
.....|.||.|-
T Consensus 75 ~~~~~~id~vi~~a 88 (256)
T PRK12745 75 QAAWGRIDCLVNNA 88 (256)
T ss_pred HHhcCCCCEEEECC
Confidence 124689998883
No 304
>PRK07048 serine/threonine dehydratase; Validated
Probab=30.18 E-value=1.7e+02 Score=26.13 Aligned_cols=50 Identities=16% Similarity=0.275 Sum_probs=34.4
Q ss_pred CeEEEEecCChhHHHHHH-HHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEE
Q 044601 16 QRILLVGEGDFSFSLCLA-REFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFY 76 (213)
Q Consensus 16 ~~ILlVGEGnFSFS~aLa-~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~ 76 (213)
+.|...+-||..-|+|++ +.+|-...|+.- ++. | ..+++.++.+|++|+.
T Consensus 73 ~~vv~aSsGN~g~alA~~a~~~G~~~~vvvp--~~~-------~--~~k~~~~~~~GAeV~~ 123 (321)
T PRK07048 73 AGVVTFSSGNHAQAIALSARLLGIPATIVMP--QDA-------P--AAKVAATRGYGGEVVT 123 (321)
T ss_pred CcEEEeCCCHHHHHHHHHHHHcCCCEEEEEC--CCC-------C--HHHHHHHHHCCCEEEE
Confidence 568999999999999995 556544333332 221 1 3468888999998764
No 305
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=29.91 E-value=3.2e+02 Score=25.54 Aligned_cols=58 Identities=21% Similarity=0.233 Sum_probs=34.6
Q ss_pred CCeEEEEecCChhHHHHHH-HHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeecc
Q 044601 15 KQRILLVGEGDFSFSLCLA-REFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAM 81 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aLa-~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt 81 (213)
.++|+++|=|-=..+.|.+ ... +..|+. .|..+. .......+.|++.|+++..+.+.+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~--G~~V~~--~d~~~~-----~~~~~~~~~l~~~gv~~~~~~~~~ 74 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLEL--GARVTV--VDDGDD-----ERHRALAAILEALGATVRLGPGPT 74 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--CCEEEE--EeCCch-----hhhHHHHHHHHHcCCEEEECCCcc
Confidence 5789999988755554332 223 345544 342221 112234577899999999887665
No 306
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=29.75 E-value=1.2e+02 Score=28.29 Aligned_cols=66 Identities=12% Similarity=0.288 Sum_probs=38.7
Q ss_pred CCCeEEEEecCChhHHHHHH-HHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccC
Q 044601 14 SKQRILLVGEGDFSFSLCLA-REFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMS 84 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa-~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~ 84 (213)
..++|++||-|+-..-.|.. ..++. ..|+--...+...+ |....-++.|++.|+.++++.-++.+.
T Consensus 272 ~g~~VvViGgG~~g~e~A~~l~~~G~-~~Vtlv~~~~~~~~----~~~~~~~~~~~~~GV~i~~~~~v~~i~ 338 (457)
T PRK11749 272 VGKRVVVIGGGNTAMDAARTAKRLGA-ESVTIVYRRGREEM----PASEEEVEHAKEEGVEFEWLAAPVEIL 338 (457)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC-CeEEEeeecCcccC----CCCHHHHHHHHHCCCEEEecCCcEEEE
Confidence 57899999999866655542 23342 13333322222111 112233678889999999887666654
No 307
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=29.71 E-value=2.9e+02 Score=23.27 Aligned_cols=73 Identities=22% Similarity=0.316 Sum_probs=41.2
Q ss_pred EEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCCcccEEE
Q 044601 19 LLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTHKFDRVI 98 (213)
Q Consensus 19 LlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~~FDrIi 98 (213)
|-.|=|.+||+.|.- .+..++.--.| .+.|.- +..|.++++=. +. +...|.+++. ++++.||..|
T Consensus 55 LgcgcGmLs~a~sm~----~~e~vlGfDId-peALEI----f~rNaeEfEvq-id-lLqcdildle----~~~g~fDtav 119 (185)
T KOG3420|consen 55 LGCGCGMLSIAFSMP----KNESVLGFDID-PEALEI----FTRNAEEFEVQ-ID-LLQCDILDLE----LKGGIFDTAV 119 (185)
T ss_pred hcCchhhhHHHhhcC----CCceEEeeecC-HHHHHH----HhhchHHhhhh-hh-eeeeeccchh----ccCCeEeeEE
Confidence 567889999877754 24455554444 333333 34555555421 11 2233444432 2468999999
Q ss_pred EcCCcCCCc
Q 044601 99 YNFPHVGFI 107 (213)
Q Consensus 99 FNFPH~G~~ 107 (213)
||=|. |.+
T Consensus 120 iNppF-GTk 127 (185)
T KOG3420|consen 120 INPPF-GTK 127 (185)
T ss_pred ecCCC-Ccc
Confidence 99665 543
No 308
>PRK07576 short chain dehydrogenase; Provisional
Probab=29.68 E-value=3.4e+02 Score=22.82 Aligned_cols=79 Identities=15% Similarity=0.186 Sum_probs=43.2
Q ss_pred CCCeEEEEecCChhHHHHHHHHh-CCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCE-EEEeeeccccCCCccc--
Q 044601 14 SKQRILLVGEGDFSFSLCLAREF-GFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCL-VFYGVDAMQMSQHFFL-- 89 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~-V~~gVDAt~L~~~~~l-- 89 (213)
++++||+.|=+. --..++++++ ..+..|+++..+. +++ ....+.+...+.. ..+.+|+++..+...+
T Consensus 8 ~~k~ilItGasg-gIG~~la~~l~~~G~~V~~~~r~~-~~~-------~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~ 78 (264)
T PRK07576 8 AGKNVVVVGGTS-GINLGIAQAFARAGANVAVASRSQ-EKV-------DAAVAQLQQAGPEGLGVSADVRDYAAVEAAFA 78 (264)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCH-HHH-------HHHHHHHHHhCCceEEEECCCCCHHHHHHHHH
Confidence 467899998644 2223333322 1356788887663 222 2223445444433 4678898875432211
Q ss_pred ----cCCcccEEEEcC
Q 044601 90 ----RTHKFDRVIYNF 101 (213)
Q Consensus 90 ----~~~~FDrIiFNF 101 (213)
.....|.||.|=
T Consensus 79 ~~~~~~~~iD~vi~~a 94 (264)
T PRK07576 79 QIADEFGPIDVLVSGA 94 (264)
T ss_pred HHHHHcCCCCEEEECC
Confidence 124689998763
No 309
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=29.62 E-value=1.6e+02 Score=26.46 Aligned_cols=111 Identities=17% Similarity=0.233 Sum_probs=47.7
Q ss_pred CCeEEEEecCChhHHHHH-HHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEE-EEeeeccccCCCccccCC
Q 044601 15 KQRILLVGEGDFSFSLCL-AREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLV-FYGVDAMQMSQHFFLRTH 92 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aL-a~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V-~~gVDAt~L~~~~~l~~~ 92 (213)
..||++||=|=+=+|.=+ ++.++. ...-+++|.-++..+ -+..-+...-.++..+ .+..|+..+... -.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~--~~~v~~iD~d~~A~~---~a~~lv~~~~~L~~~m~f~~~d~~~~~~d----l~ 191 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGP--GARVHNIDIDPEANE---LARRLVASDLGLSKRMSFITADVLDVTYD----LK 191 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT----EEEEEESSHHHHH---HHHHHHH---HH-SSEEEEES-GGGG-GG------
T ss_pred cceEEEEcCCCcchHHHHHHHHhCC--CCeEEEEeCCHHHHH---HHHHHHhhcccccCCeEEEecchhccccc----cc
Confidence 369999999999998765 666654 344456663322222 1223333222233333 556677765432 25
Q ss_pred cccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccC
Q 044601 93 KFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEG 148 (213)
Q Consensus 93 ~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~ 148 (213)
.||.|++-= .+|.. .| .+ ...|.+....++ ++..|.+.-..|
T Consensus 192 ~~DvV~lAa-lVg~~-~e--------~K---~~Il~~l~~~m~-~ga~l~~Rsa~G 233 (276)
T PF03059_consen 192 EYDVVFLAA-LVGMD-AE--------PK---EEILEHLAKHMA-PGARLVVRSAHG 233 (276)
T ss_dssp --SEEEE-T-T-S-------------SH---HHHHHHHHHHS--TTSEEEEEE--G
T ss_pred cCCEEEEhh-hcccc-cc--------hH---HHHHHHHHhhCC-CCcEEEEecchh
Confidence 699998752 33311 11 11 144556677786 888888886655
No 310
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=29.56 E-value=86 Score=25.49 Aligned_cols=78 Identities=18% Similarity=0.214 Sum_probs=41.7
Q ss_pred CCCeEEEEecCCh-hHHHHHHHHh-CCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccC
Q 044601 14 SKQRILLVGEGDF-SFSLCLAREF-GFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRT 91 (213)
Q Consensus 14 ~~~~ILlVGEGnF-SFS~aLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~ 91 (213)
...-++|+|-||= .-.+++||++ ..+.+++.=.+...+ +.=+++..+++.+++.|+.++...+...+....
T Consensus 25 ~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---- 97 (169)
T PF03853_consen 25 GPRVLILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPE---KLSEDAKQQLEILKKMGIKIIELDSDEDLSEAL---- 97 (169)
T ss_dssp T-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSS---STSHHHHHHHHHHHHTT-EEESSCCGSGGGHHG----
T ss_pred CCeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccc---cCCHHHHHHHHHHHhcCCcEeeccccchhhccc----
Confidence 3455667888862 3455566655 224455542222211 122346778999999999887655554433221
Q ss_pred CcccEEE
Q 044601 92 HKFDRVI 98 (213)
Q Consensus 92 ~~FDrIi 98 (213)
..+|.||
T Consensus 98 ~~~dlII 104 (169)
T PF03853_consen 98 EPADLII 104 (169)
T ss_dssp SCESEEE
T ss_pred ccccEEE
Confidence 2577777
No 311
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=29.53 E-value=2e+02 Score=25.82 Aligned_cols=54 Identities=17% Similarity=0.248 Sum_probs=37.6
Q ss_pred CCCeEEEEecCChhHHHHH-HHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeee
Q 044601 14 SKQRILLVGEGDFSFSLCL-AREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVD 79 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aL-a~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVD 79 (213)
+.+.|...+.||+.-|+|. ++.+|-+..|+.-.-. + ...++.|+.+|++|+. ++
T Consensus 50 ~~~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~---------~--~~k~~~l~~~GA~v~~-~~ 104 (316)
T cd06448 50 ECVHVVCSSGGNAGLAAAYAARKLGVPCTIVVPEST---------K--PRVVEKLRDEGATVVV-HG 104 (316)
T ss_pred cCCeEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCC---------C--HHHHHHHHHcCCEEEE-EC
Confidence 4678999999999999999 4556544444433211 1 2458899999998875 54
No 312
>PRK06196 oxidoreductase; Provisional
Probab=29.50 E-value=1.3e+02 Score=26.29 Aligned_cols=76 Identities=9% Similarity=0.103 Sum_probs=43.4
Q ss_pred CCeEEEEecCChhHHHHHHHHh-CCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccc----
Q 044601 15 KQRILLVGEGDFSFSLCLAREF-GFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFL---- 89 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l---- 89 (213)
+++||+.|=+.+ --.++++.+ ..+.+|++++.+.+ .+ .+..+.++. + ..+.+|.++......+
T Consensus 26 ~k~vlITGasgg-IG~~~a~~L~~~G~~Vv~~~R~~~-~~-------~~~~~~l~~--v-~~~~~Dl~d~~~v~~~~~~~ 93 (315)
T PRK06196 26 GKTAIVTGGYSG-LGLETTRALAQAGAHVIVPARRPD-VA-------REALAGIDG--V-EVVMLDLADLESVRAFAERF 93 (315)
T ss_pred CCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEeCCHH-HH-------HHHHHHhhh--C-eEEEccCCCHHHHHHHHHHH
Confidence 578999996543 445555544 23568888877632 11 122233332 3 3567888887643221
Q ss_pred --cCCcccEEEEcCC
Q 044601 90 --RTHKFDRVIYNFP 102 (213)
Q Consensus 90 --~~~~FDrIiFNFP 102 (213)
...+.|.||.|=.
T Consensus 94 ~~~~~~iD~li~nAg 108 (315)
T PRK06196 94 LDSGRRIDILINNAG 108 (315)
T ss_pred HhcCCCCCEEEECCC
Confidence 1256899988754
No 313
>PRK08303 short chain dehydrogenase; Provisional
Probab=29.49 E-value=3.9e+02 Score=23.46 Aligned_cols=86 Identities=15% Similarity=0.145 Sum_probs=49.4
Q ss_pred CCCeEEEEecCChhHHHHHHHHh-CCCCeEEEeccCCHHHHHhhc--c-hHHHHHHHHHhCCCE-EEEeeeccccCCCcc
Q 044601 14 SKQRILLVGEGDFSFSLCLAREF-GFAHNMVATCLDTQETIANKY--S-NAVDNVRELEERGCL-VFYGVDAMQMSQHFF 88 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa~~~-~~~~~l~ATs~ds~~~l~~kY--~-~a~~ni~~L~~~g~~-V~~gVDAt~L~~~~~ 88 (213)
+++.+|+.|=+ =..-+++++.+ ..+.+|++++.+... ..+.+ + ......+.|+..|.. +.+.+|.++..+...
T Consensus 7 ~~k~~lITGgs-~GIG~aia~~la~~G~~Vv~~~r~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~ 84 (305)
T PRK08303 7 RGKVALVAGAT-RGAGRGIAVELGAAGATVYVTGRSTRA-RRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRA 84 (305)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeccccc-ccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHH
Confidence 35789999954 35666666655 235688888776421 00000 0 122334556666654 457789888764432
Q ss_pred c------cCCcccEEEEcC
Q 044601 89 L------RTHKFDRVIYNF 101 (213)
Q Consensus 89 l------~~~~FDrIiFNF 101 (213)
+ ...+.|.+|.|-
T Consensus 85 ~~~~~~~~~g~iDilVnnA 103 (305)
T PRK08303 85 LVERIDREQGRLDILVNDI 103 (305)
T ss_pred HHHHHHHHcCCccEEEECC
Confidence 1 125689988884
No 314
>PRK06483 dihydromonapterin reductase; Provisional
Probab=29.46 E-value=2.1e+02 Score=23.36 Aligned_cols=74 Identities=18% Similarity=0.249 Sum_probs=42.4
Q ss_pred CCeEEEEecCChhHHHHHHHHh-CCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccc----
Q 044601 15 KQRILLVGEGDFSFSLCLAREF-GFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFL---- 89 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l---- 89 (213)
.+++|+.|=+. ..-.++++++ ..+.+|+++..+.++. .+.++..|+. .+.+|.++......+
T Consensus 2 ~k~vlItGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~-----------~~~~~~~~~~-~~~~D~~~~~~~~~~~~~~ 68 (236)
T PRK06483 2 PAPILITGAGQ-RIGLALAWHLLAQGQPVIVSYRTHYPA-----------IDGLRQAGAQ-CIQADFSTNAGIMAFIDEL 68 (236)
T ss_pred CceEEEECCCC-hHHHHHHHHHHHCCCeEEEEeCCchhH-----------HHHHHHcCCE-EEEcCCCCHHHHHHHHHHH
Confidence 35788888654 2344444443 2356888887654321 2344455654 467888876543211
Q ss_pred --cCCcccEEEEcC
Q 044601 90 --RTHKFDRVIYNF 101 (213)
Q Consensus 90 --~~~~FDrIiFNF 101 (213)
.....|.+|.|=
T Consensus 69 ~~~~~~id~lv~~a 82 (236)
T PRK06483 69 KQHTDGLRAIIHNA 82 (236)
T ss_pred HhhCCCccEEEECC
Confidence 124689888874
No 315
>PLN02740 Alcohol dehydrogenase-like
Probab=29.43 E-value=2.6e+02 Score=25.17 Aligned_cols=54 Identities=17% Similarity=0.266 Sum_probs=34.7
Q ss_pred cCCCCCCeEEEEecCChhHH-HHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEE
Q 044601 10 NHYSSKQRILLVGEGDFSFS-LCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFY 76 (213)
Q Consensus 10 ~~y~~~~~ILlVGEGnFSFS-~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~ 76 (213)
....++++||++|-|-..-. ..+|+++| ...|+++.-+. +.++.++++|+....
T Consensus 194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~G-~~~Vi~~~~~~------------~r~~~a~~~Ga~~~i 248 (381)
T PLN02740 194 ANVQAGSSVAIFGLGAVGLAVAEGARARG-ASKIIGVDINP------------EKFEKGKEMGITDFI 248 (381)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCC-CCcEEEEcCCh------------HHHHHHHHcCCcEEE
Confidence 45677899999998866643 34577765 33677774432 235556677875443
No 316
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=29.38 E-value=1.5e+02 Score=25.71 Aligned_cols=37 Identities=19% Similarity=0.350 Sum_probs=24.2
Q ss_pred cCCCCCCeEEEEecCChh-HHHHHHHHhCCCCeEEEeccC
Q 044601 10 NHYSSKQRILLVGEGDFS-FSLCLAREFGFAHNMVATCLD 48 (213)
Q Consensus 10 ~~y~~~~~ILlVGEGnFS-FS~aLa~~~~~~~~l~ATs~d 48 (213)
....++++||+.|.|... ++..||+..+ .++++|+-.
T Consensus 155 ~~l~~g~~vLI~g~g~vG~~a~~lA~~~g--~~v~~~~~s 192 (337)
T cd08261 155 AGVTAGDTVLVVGAGPIGLGVIQVAKARG--ARVIVVDID 192 (337)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEECCC
Confidence 345678899999976433 3345567764 678887543
No 317
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=29.37 E-value=2.5e+02 Score=26.56 Aligned_cols=74 Identities=26% Similarity=0.221 Sum_probs=47.3
Q ss_pred HHHHHHHHHhCCCEEEEeeeccccCCCccccCCcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCC
Q 044601 60 AVDNVRELEERGCLVFYGVDAMQMSQHFFLRTHKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENG 139 (213)
Q Consensus 60 a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G 139 (213)
|..|.+..--.+.....-.|+++|++.+ ..+|.||.|=|-==.-+.+ .....|-+.|.+.+++.+. ..+
T Consensus 270 Ak~NA~~AGv~d~I~f~~~d~~~l~~~~----~~~gvvI~NPPYGeRlg~~------~~v~~LY~~fg~~lk~~~~-~ws 338 (381)
T COG0116 270 AKANARAAGVGDLIEFKQADATDLKEPL----EEYGVVISNPPYGERLGSE------ALVAKLYREFGRTLKRLLA-GWS 338 (381)
T ss_pred HHHHHHhcCCCceEEEEEcchhhCCCCC----CcCCEEEeCCCcchhcCCh------hhHHHHHHHHHHHHHHHhc-CCc
Confidence 5556554444445567778999987654 6799999997753222211 2445577788888888886 444
Q ss_pred eEEEE
Q 044601 140 EIHVT 144 (213)
Q Consensus 140 ~ihvT 144 (213)
...+|
T Consensus 339 ~~v~t 343 (381)
T COG0116 339 RYVFT 343 (381)
T ss_pred eEEEE
Confidence 44333
No 318
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=29.29 E-value=96 Score=27.23 Aligned_cols=150 Identities=19% Similarity=0.251 Sum_probs=70.8
Q ss_pred CCeEE--EEecCChhHHHHHHHHh------CCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCC---EEEEeeecccc
Q 044601 15 KQRIL--LVGEGDFSFSLCLAREF------GFAHNMVATCLDTQETIANKYSNAVDNVRELEERGC---LVFYGVDAMQM 83 (213)
Q Consensus 15 ~~~IL--lVGEGnFSFS~aLa~~~------~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~---~V~~gVDAt~L 83 (213)
..+|| .+|.|+|--+ +.+.. ....+|++.-.|.....+. ..|+ .|...+. .+.++ |. |
T Consensus 47 ~~~VlDPacGsG~fL~~--~~~~i~~~~~~~~~~~i~G~ei~~~~~~la-----~~nl-~l~~~~~~~~~i~~~-d~--l 115 (311)
T PF02384_consen 47 GDSVLDPACGSGGFLVA--AMEYIKEKRNKIKEINIYGIEIDPEAVALA-----KLNL-LLHGIDNSNINIIQG-DS--L 115 (311)
T ss_dssp TEEEEETT-TTSHHHHH--HHHHHHTCHHHHCCEEEEEEES-HHHHHHH-----HHHH-HHTTHHCBGCEEEES--T--T
T ss_pred cceeechhhhHHHHHHH--HHHhhcccccccccceeEeecCcHHHHHHH-----Hhhh-hhhcccccccccccc-cc--c
Confidence 44565 3677766543 33321 2466888877774433222 2333 2222111 22222 32 2
Q ss_pred CCCccccCCcccEEEEcCCcCCCcccccch-HH--------HHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCCCCC--
Q 044601 84 SQHFFLRTHKFDRVIYNFPHVGFIFRENSY-CQ--------IQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGDPYN-- 152 (213)
Q Consensus 84 ~~~~~l~~~~FDrIiFNFPH~G~~~~e~~~-~~--------i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py~-- 152 (213)
..........||.||-|-|.......+... .. -..+..+ .|+.-+-..|+ ++|++-+-+.++-.+.
T Consensus 116 ~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~Fi~~~l~~Lk-~~G~~~~Ilp~~~L~~~~ 192 (311)
T PF02384_consen 116 ENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEY--AFIEHALSLLK-PGGRAAIILPNGFLFSSS 192 (311)
T ss_dssp TSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHH--HHHHHHHHTEE-EEEEEEEEEEHHHHHGST
T ss_pred cccccccccccccccCCCCccccccccccccccccccccCCCccchhh--hhHHHHHhhcc-cccceeEEecchhhhccc
Confidence 221111257899999999988752111100 00 0123333 38888999998 9999877776542221
Q ss_pred -cccHHh-HHHHhCcEEEEEeecCCCCCCC
Q 044601 153 -KWELVK-KAEKIGLTLQEVVPFCKQDYPG 180 (213)
Q Consensus 153 -~W~i~~-lA~~~gl~l~~~~~F~~~~yPg 180 (213)
.-.+.+ +... ..+...+.+....|++
T Consensus 193 ~~~~iR~~ll~~--~~i~aVI~Lp~~~F~~ 220 (311)
T PF02384_consen 193 SEKKIRKYLLEN--GYIEAVISLPSNLFKP 220 (311)
T ss_dssp HHHHHHHHHHHH--EEEEEEEE--TTSSSS
T ss_pred hHHHHHHHHHhh--chhhEEeecccceecc
Confidence 133433 3333 3466667776666766
No 319
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=29.03 E-value=1.6e+02 Score=25.65 Aligned_cols=52 Identities=17% Similarity=0.238 Sum_probs=30.8
Q ss_pred CCCCeEEEEecCChhHHH-HHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEe
Q 044601 13 SSKQRILLVGEGDFSFSL-CLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYG 77 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~-aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~g 77 (213)
.++++||+.|.|...-++ .||+++| ...|++|+ +. .++.+.++++|+.....
T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~~G-~~~v~~~~--~~----------~~~~~~~~~lg~~~~~~ 214 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHVG-ARHVVITD--VN----------EYRLELARKMGATRAVN 214 (341)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcC-CCEEEEEc--CC----------HHHHHHHHHhCCcEEec
Confidence 467899998887655443 4567765 22577773 21 12345566777754443
No 320
>PRK09242 tropinone reductase; Provisional
Probab=28.91 E-value=2.3e+02 Score=23.50 Aligned_cols=77 Identities=12% Similarity=0.127 Sum_probs=42.7
Q ss_pred CCCeEEEEecCC---hhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhC--CCE-EEEeeeccccCCCc
Q 044601 14 SKQRILLVGEGD---FSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEER--GCL-VFYGVDAMQMSQHF 87 (213)
Q Consensus 14 ~~~~ILlVGEGn---FSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~--g~~-V~~gVDAt~L~~~~ 87 (213)
.++++|++|=+. .+.+..|++ .+.+|++++.+.+ .+ ....+.|+.. +.. ..+.+|.++..+..
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~---~G~~v~~~~r~~~-~~-------~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~ 76 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLG---LGADVLIVARDAD-AL-------AQARDELAEEFPEREVHGLAADVSDDEDRR 76 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHH---cCCEEEEEeCCHH-HH-------HHHHHHHHhhCCCCeEEEEECCCCCHHHHH
Confidence 367899998643 233333443 2568888887642 22 2233444443 443 45678888755322
Q ss_pred cc------cCCcccEEEEcC
Q 044601 88 FL------RTHKFDRVIYNF 101 (213)
Q Consensus 88 ~l------~~~~FDrIiFNF 101 (213)
.+ ...+.|.||.|-
T Consensus 77 ~~~~~~~~~~g~id~li~~a 96 (257)
T PRK09242 77 AILDWVEDHWDGLHILVNNA 96 (257)
T ss_pred HHHHHHHHHcCCCCEEEECC
Confidence 11 125689888775
No 321
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=28.86 E-value=3.5e+02 Score=22.71 Aligned_cols=37 Identities=16% Similarity=0.269 Sum_probs=25.7
Q ss_pred CCCCCCeEEEEec-CChhHHHHH-HHHhCCCCeEEEeccCC
Q 044601 11 HYSSKQRILLVGE-GDFSFSLCL-AREFGFAHNMVATCLDT 49 (213)
Q Consensus 11 ~y~~~~~ILlVGE-GnFSFS~aL-a~~~~~~~~l~ATs~ds 49 (213)
.-.++++||+.|- |....++.- |++.| ..|++|+-..
T Consensus 139 ~~~~g~~vlV~ga~g~~g~~~~~~a~~~g--~~v~~~~~~~ 177 (320)
T cd08243 139 GLQPGDTLLIRGGTSSVGLAALKLAKALG--ATVTATTRSP 177 (320)
T ss_pred CCCCCCEEEEEcCCChHHHHHHHHHHHcC--CEEEEEeCCH
Confidence 3456799999996 777776544 66664 5688876553
No 322
>PRK05993 short chain dehydrogenase; Provisional
Probab=28.79 E-value=1.7e+02 Score=24.90 Aligned_cols=72 Identities=24% Similarity=0.338 Sum_probs=40.0
Q ss_pred CCeEEEEecCChhHHHHHHHHh-CCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccc----
Q 044601 15 KQRILLVGEGDFSFSLCLAREF-GFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFL---- 89 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l---- 89 (213)
.++||+.|=+. ..-.++++.+ ..+.+|++++.+.+ .+++|++.++.+ +.+|.++......+
T Consensus 4 ~k~vlItGasg-giG~~la~~l~~~G~~Vi~~~r~~~------------~~~~l~~~~~~~-~~~Dl~d~~~~~~~~~~~ 69 (277)
T PRK05993 4 KRSILITGCSS-GIGAYCARALQSDGWRVFATCRKEE------------DVAALEAEGLEA-FQLDYAEPESIAALVAQV 69 (277)
T ss_pred CCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEECCHH------------HHHHHHHCCceE-EEccCCCHHHHHHHHHHH
Confidence 46789998632 2333444433 23578998877632 123445556543 56788875432111
Q ss_pred ---cCCcccEEEEc
Q 044601 90 ---RTHKFDRVIYN 100 (213)
Q Consensus 90 ---~~~~FDrIiFN 100 (213)
.....|.||.|
T Consensus 70 ~~~~~g~id~li~~ 83 (277)
T PRK05993 70 LELSGGRLDALFNN 83 (277)
T ss_pred HHHcCCCccEEEEC
Confidence 12467888776
No 323
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=28.68 E-value=1.1e+02 Score=26.43 Aligned_cols=139 Identities=19% Similarity=0.262 Sum_probs=79.3
Q ss_pred CCCC-eEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCcc---
Q 044601 13 SSKQ-RILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFF--- 88 (213)
Q Consensus 13 ~~~~-~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~--- 88 (213)
.+.. +||=||=|.=-=+.-+|+++. ...--.|-.|.. +.. .....+++-..-++.-=..+|+++-.....
T Consensus 23 ~~~~~~vLEiaSGtGqHa~~FA~~lP-~l~WqPSD~~~~--~~~---sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~ 96 (204)
T PF06080_consen 23 PDSGTRVLEIASGTGQHAVYFAQALP-HLTWQPSDPDDN--LRP---SIRAWIAEAGLPNVRPPLALDVSAPPWPWELPA 96 (204)
T ss_pred CccCceEEEEcCCccHHHHHHHHHCC-CCEEcCCCCChH--HHh---hHHHHHHhcCCcccCCCeEeecCCCCCcccccc
Confidence 3344 599999998888888888874 333333333321 111 122233332222233333578877532211
Q ss_pred -ccCCcccEEEE-cCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEE--------------------ec
Q 044601 89 -LRTHKFDRVIY-NFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVT--------------------HK 146 (213)
Q Consensus 89 -l~~~~FDrIiF-NFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvT--------------------l~ 146 (213)
.....||.|+- |.=|+-. .....++|+.|.++|+ ++|.+.|= |+
T Consensus 97 ~~~~~~~D~i~~~N~lHI~p-------------~~~~~~lf~~a~~~L~-~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr 162 (204)
T PF06080_consen 97 PLSPESFDAIFCINMLHISP-------------WSAVEGLFAGAARLLK-PGGLLFLYGPFNRDGKFTSESNAAFDASLR 162 (204)
T ss_pred ccCCCCcceeeehhHHHhcC-------------HHHHHHHHHHHHHhCC-CCCEEEEeCCcccCCEeCCcHHHHHHHHHh
Confidence 13467888863 3334332 4667899999999998 88876543 22
Q ss_pred cCCCCCccc------HHhHHHHhCcEEEEEeec
Q 044601 147 EGDPYNKWE------LVKKAEKIGLTLQEVVPF 173 (213)
Q Consensus 147 ~~~py~~W~------i~~lA~~~gl~l~~~~~F 173 (213)
...| .|. |..+|+.+||.|.+.+.-
T Consensus 163 ~rdp--~~GiRD~e~v~~lA~~~GL~l~~~~~M 193 (204)
T PF06080_consen 163 SRDP--EWGIRDIEDVEALAAAHGLELEEDIDM 193 (204)
T ss_pred cCCC--CcCccCHHHHHHHHHHCCCccCccccc
Confidence 2222 243 346899999999877543
No 324
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=28.67 E-value=1.2e+02 Score=29.27 Aligned_cols=37 Identities=11% Similarity=0.146 Sum_probs=25.1
Q ss_pred CCCCeEEEEecCChhHHHHH-HHHhCCCCeEEEeccCC
Q 044601 13 SSKQRILLVGEGDFSFSLCL-AREFGFAHNMVATCLDT 49 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~aL-a~~~~~~~~l~ATs~ds 49 (213)
=.++|+.++||.+++.+++= +..+|-....++|.+-+
T Consensus 312 L~GKrvai~Gdp~~~i~LarfL~elGmevV~vgt~~~~ 349 (457)
T CHL00073 312 VRGKSVFFMGDNLLEISLARFLIRCGMIVYEIGIPYMD 349 (457)
T ss_pred HCCCEEEEECCCcHHHHHHHHHHHCCCEEEEEEeCCCC
Confidence 36899999999999887764 34466444455555543
No 325
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=28.54 E-value=2.2e+02 Score=24.90 Aligned_cols=50 Identities=20% Similarity=0.253 Sum_probs=34.7
Q ss_pred CCeEEEEecCChhHHHHH-HHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEE
Q 044601 15 KQRILLVGEGDFSFSLCL-AREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVF 75 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aL-a~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~ 75 (213)
...|+.--.||...|+|. ++.+|-+..|+.-. +. ...+++.++..|++|+
T Consensus 53 ~~~vv~~SsGN~g~alA~~a~~~G~~~~i~vp~--~~---------~~~k~~~~~~~Ga~v~ 103 (291)
T cd01561 53 GTTIIEPTSGNTGIGLAMVAAAKGYRFIIVMPE--TM---------SEEKRKLLRALGAEVI 103 (291)
T ss_pred CCEEEEeCCChHHHHHHHHHHHcCCeEEEEECC--CC---------CHHHHHHHHHcCCEEE
Confidence 367899999999999999 45555443333321 11 1467899999999876
No 326
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=28.51 E-value=3.2e+02 Score=22.17 Aligned_cols=33 Identities=24% Similarity=0.429 Sum_probs=23.0
Q ss_pred CCCCCeEEEEecCChhHHHH---HHHHhCCCCeEEEeccC
Q 044601 12 YSSKQRILLVGEGDFSFSLC---LAREFGFAHNMVATCLD 48 (213)
Q Consensus 12 y~~~~~ILlVGEGnFSFS~a---La~~~~~~~~l~ATs~d 48 (213)
..++.+||++|-|. ...+ ++++.+ .++++++.+
T Consensus 132 ~~~~~~vli~g~~~--~G~~~~~~a~~~g--~~v~~~~~~ 167 (271)
T cd05188 132 LKPGDTVLVLGAGG--VGLLAAQLAKAAG--ARVIVTDRS 167 (271)
T ss_pred CCCCCEEEEECCCH--HHHHHHHHHHHcC--CeEEEEcCC
Confidence 36789999999987 4333 344544 688888765
No 327
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=28.32 E-value=3.7e+02 Score=22.86 Aligned_cols=106 Identities=19% Similarity=0.100 Sum_probs=68.3
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCC
Q 044601 13 SSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTH 92 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~ 92 (213)
.++++++=||.|-=|-+.-++.. ++...++|--.| ++..+ ....|.+.+---++.|+- =||-+.-.. -.
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a~~-~p~~~v~AIe~~--~~a~~---~~~~N~~~fg~~n~~vv~-g~Ap~~L~~----~~ 101 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEWALA-GPSGRVIAIERD--EEALE---LIERNAARFGVDNLEVVE-GDAPEALPD----LP 101 (187)
T ss_pred CCCCEEEEeCCCccHHHHHHHHh-CCCceEEEEecC--HHHHH---HHHHHHHHhCCCcEEEEe-ccchHhhcC----CC
Confidence 45789999999988888888843 445566665554 33333 256788888744555554 455443221 12
Q ss_pred cccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccC
Q 044601 93 KFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEG 148 (213)
Q Consensus 93 ~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~ 148 (213)
.||+|. +|+.+. +..-++.|-..|+ ++|+|.++-.+-
T Consensus 102 ~~daiF-----IGGg~~-------------i~~ile~~~~~l~-~ggrlV~naitl 138 (187)
T COG2242 102 SPDAIF-----IGGGGN-------------IEEILEAAWERLK-PGGRLVANAITL 138 (187)
T ss_pred CCCEEE-----ECCCCC-------------HHHHHHHHHHHcC-cCCeEEEEeecH
Confidence 699986 455321 2255677889998 999999887653
No 328
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=28.32 E-value=1.1e+02 Score=30.85 Aligned_cols=65 Identities=20% Similarity=0.334 Sum_probs=44.7
Q ss_pred CCeEEEEecCCh-----hHHHHHHHHhCCCCeEEE------eccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeecccc
Q 044601 15 KQRILLVGEGDF-----SFSLCLAREFGFAHNMVA------TCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQM 83 (213)
Q Consensus 15 ~~~ILlVGEGnF-----SFS~aLa~~~~~~~~l~A------Ts~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L 83 (213)
...-.++|||++ +=+.|||-+++.+ +||+ .|+|..-.+ ...++..+..++.|=.|++.+|..++
T Consensus 149 h~tYvl~GDGclmEGvs~EA~slAG~l~L~-kLIvlyD~N~IsiDG~~~~----~f~ed~~~RfeAyGW~vi~~~DG~D~ 223 (663)
T COG0021 149 HYTYVLVGDGCLMEGVSHEAASLAGHLKLG-KLIVLYDSNDISIDGDTSL----SFTEDVAKRFEAYGWNVIRVIDGHDL 223 (663)
T ss_pred ceEEEEecCchHhcccHHHHHHHHhhcCCC-cEEEEEeCCCceeccCccc----ccchhHHHHHHhcCCeEEEecCCCCH
Confidence 345689999998 5678889888754 6666 344433111 11345567888999999999997765
Q ss_pred C
Q 044601 84 S 84 (213)
Q Consensus 84 ~ 84 (213)
.
T Consensus 224 e 224 (663)
T COG0021 224 E 224 (663)
T ss_pred H
Confidence 5
No 329
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=28.28 E-value=3.6e+02 Score=22.64 Aligned_cols=76 Identities=17% Similarity=0.245 Sum_probs=41.2
Q ss_pred CCCeEEEEecC---ChhH--HHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHh-CCCEEEEeeeccccCCCc
Q 044601 14 SKQRILLVGEG---DFSF--SLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEE-RGCLVFYGVDAMQMSQHF 87 (213)
Q Consensus 14 ~~~~ILlVGEG---nFSF--S~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~-~g~~V~~gVDAt~L~~~~ 87 (213)
+++.+|+.|=+ ..-. +..|++ .+.+|+.+..+... .+.++++.+ .+..+.+.+|+++..+..
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~---~G~~v~l~~r~~~~---------~~~~~~~~~~~~~~~~~~~D~~~~~~v~ 76 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRA---LGAELAVTYLNDKA---------RPYVEPLAEELDAPIFLPLDVREPGQLE 76 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHH---cCCEEEEEeCChhh---------HHHHHHHHHhhccceEEecCcCCHHHHH
Confidence 35788999854 3333 333333 24677777665321 112223321 233456788998876543
Q ss_pred cc------cCCcccEEEEcC
Q 044601 88 FL------RTHKFDRVIYNF 101 (213)
Q Consensus 88 ~l------~~~~FDrIiFNF 101 (213)
.+ +..+.|.+|.|=
T Consensus 77 ~~~~~~~~~~g~ld~lv~nA 96 (258)
T PRK07533 77 AVFARIAEEWGRLDFLLHSI 96 (258)
T ss_pred HHHHHHHHHcCCCCEEEEcC
Confidence 21 125689998883
No 330
>PRK07775 short chain dehydrogenase; Provisional
Probab=28.26 E-value=2e+02 Score=24.38 Aligned_cols=79 Identities=10% Similarity=0.136 Sum_probs=43.4
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhC-CCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEE-EEeeeccccCCCccc-
Q 044601 13 SSKQRILLVGEGDFSFSLCLAREFG-FAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLV-FYGVDAMQMSQHFFL- 89 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~aLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V-~~gVDAt~L~~~~~l- 89 (213)
.+.+.+|+.|=+. ....+|++.+- .+.+|++++... +. ..+..+.++..|..+ .+-+|.++..+...+
T Consensus 8 ~~~~~vlVtGa~g-~iG~~la~~L~~~G~~V~~~~r~~-~~-------~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 78 (274)
T PRK07775 8 PDRRPALVAGASS-GIGAATAIELAAAGFPVALGARRV-EK-------CEELVDKIRADGGEAVAFPLDVTDPDSVKSFV 78 (274)
T ss_pred CCCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCH-HH-------HHHHHHHHHhcCCeEEEEECCCCCHHHHHHHH
Confidence 3456899999543 45566666542 356787776542 21 112234455556544 456788876643211
Q ss_pred -----cCCcccEEEEc
Q 044601 90 -----RTHKFDRVIYN 100 (213)
Q Consensus 90 -----~~~~FDrIiFN 100 (213)
.....|.||.|
T Consensus 79 ~~~~~~~~~id~vi~~ 94 (274)
T PRK07775 79 AQAEEALGEIEVLVSG 94 (274)
T ss_pred HHHHHhcCCCCEEEEC
Confidence 12356877655
No 331
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=28.21 E-value=1.6e+02 Score=24.76 Aligned_cols=64 Identities=13% Similarity=0.174 Sum_probs=36.8
Q ss_pred CCCeEEEEecCChhHHHHHH-HHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhC-CCEEEEeeeccccCC
Q 044601 14 SKQRILLVGEGDFSFSLCLA-REFGFAHNMVATCLDTQETIANKYSNAVDNVRELEER-GCLVFYGVDAMQMSQ 85 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa-~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~-g~~V~~gVDAt~L~~ 85 (213)
.+++|++||-|+-..-.+.+ ...+..+.++... + .+ .......+.|++. |+.++.+..++++..
T Consensus 140 ~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~-~---~~----~~~~~~~~~l~~~~gv~~~~~~~v~~i~~ 205 (300)
T TIGR01292 140 KNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRR-D---KF----RAEKILLDRLRKNPNIEFLWNSTVKEIVG 205 (300)
T ss_pred CCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeC-c---cc----CcCHHHHHHHHhCCCeEEEeccEEEEEEc
Confidence 45799999999876655443 2223222222221 1 11 1123456778887 999998876666653
No 332
>PRK06182 short chain dehydrogenase; Validated
Probab=27.95 E-value=3.7e+02 Score=22.61 Aligned_cols=75 Identities=13% Similarity=0.164 Sum_probs=43.6
Q ss_pred CCeEEEEecCChhHHHHHHHHh-CCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccc----
Q 044601 15 KQRILLVGEGDFSFSLCLAREF-GFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFL---- 89 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l---- 89 (213)
.++||+.|=+. ....+|++.+ ..+.+|++++.+. +. ++++...++.+ +..|.++......+
T Consensus 3 ~k~vlItGasg-giG~~la~~l~~~G~~V~~~~r~~-~~-----------l~~~~~~~~~~-~~~Dv~~~~~~~~~~~~~ 68 (273)
T PRK06182 3 KKVALVTGASS-GIGKATARRLAAQGYTVYGAARRV-DK-----------MEDLASLGVHP-LSLDVTDEASIKAAVDTI 68 (273)
T ss_pred CCEEEEECCCC-hHHHHHHHHHHHCCCEEEEEeCCH-HH-----------HHHHHhCCCeE-EEeeCCCHHHHHHHHHHH
Confidence 57899999533 3455565554 2467888887663 22 22333445544 55788876543221
Q ss_pred --cCCcccEEEEcCCc
Q 044601 90 --RTHKFDRVIYNFPH 103 (213)
Q Consensus 90 --~~~~FDrIiFNFPH 103 (213)
.....|.||.|-.-
T Consensus 69 ~~~~~~id~li~~ag~ 84 (273)
T PRK06182 69 IAEEGRIDVLVNNAGY 84 (273)
T ss_pred HHhcCCCCEEEECCCc
Confidence 12468999888543
No 333
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=27.84 E-value=72 Score=26.41 Aligned_cols=32 Identities=16% Similarity=0.352 Sum_probs=17.2
Q ss_pred CeEEEEecCChhHHHH-H--HHHhCCCCeEEEeccCC
Q 044601 16 QRILLVGEGDFSFSLC-L--AREFGFAHNMVATCLDT 49 (213)
Q Consensus 16 ~~ILlVGEGnFSFS~a-L--a~~~~~~~~l~ATs~ds 49 (213)
.-|.++|||.|-++.. | |..++ .+|+--.++.
T Consensus 73 ~vv~i~GDG~f~m~~~eL~Ta~~~~--lpvi~vV~NN 107 (196)
T cd02013 73 PVVAIAGDGAWGMSMMEIMTAVRHK--LPVTAVVFRN 107 (196)
T ss_pred cEEEEEcchHHhccHHHHHHHHHhC--CCeEEEEEEC
Confidence 4566777777777532 2 23333 4455555553
No 334
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=27.84 E-value=3.3e+02 Score=22.07 Aligned_cols=121 Identities=9% Similarity=0.006 Sum_probs=57.4
Q ss_pred CCeEEEEecCChhHHHHHHHHh-CCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccc----
Q 044601 15 KQRILLVGEGDFSFSLCLAREF-GFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFL---- 89 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l---- 89 (213)
.++||+.|=+.+- ..++++.+ ..+.+|++++...+ .+ ....+.+...+.......|.++..+...+
T Consensus 5 ~~~vlItGa~g~i-G~~~a~~l~~~G~~V~~~~r~~~-~~-------~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 75 (238)
T PRK05786 5 GKKVAIIGVSEGL-GYAVAYFALKEGAQVCINSRNEN-KL-------KRMKKTLSKYGNIHYVVGDVSSTESARNVIEKA 75 (238)
T ss_pred CcEEEEECCCchH-HHHHHHHHHHCCCEEEEEeCCHH-HH-------HHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHH
Confidence 5789999976532 22233322 23568888877532 11 11223344444444556777764432111
Q ss_pred --cCCcccEEEEcCCcCCCcccc---cchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEe
Q 044601 90 --RTHKFDRVIYNFPHVGFIFRE---NSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTH 145 (213)
Q Consensus 90 --~~~~FDrIiFNFPH~G~~~~e---~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl 145 (213)
.....|.||+|=........+ +-...+..|-.-....++.+.++++ ++|.+.++-
T Consensus 76 ~~~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~-~~~~iv~~s 135 (238)
T PRK05786 76 AKVLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLK-EGSSIVLVS 135 (238)
T ss_pred HHHhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHh-cCCEEEEEe
Confidence 124579888876433211111 1122233332222333444555665 567655443
No 335
>PRK07063 short chain dehydrogenase; Provisional
Probab=27.79 E-value=2.1e+02 Score=23.78 Aligned_cols=78 Identities=15% Similarity=0.157 Sum_probs=43.2
Q ss_pred CCeEEEEecCChhHHHHHHHHh-CCCCeEEEeccCCHHHHHhhcchHHHHHHHHHh--CCCE-EEEeeeccccCCCccc-
Q 044601 15 KQRILLVGEGDFSFSLCLAREF-GFAHNMVATCLDTQETIANKYSNAVDNVRELEE--RGCL-VFYGVDAMQMSQHFFL- 89 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~--~g~~-V~~gVDAt~L~~~~~l- 89 (213)
++++|+.|=+. .--.++++.+ ..+.+|+.++.+.. . ..+..++|+. .+.. ..+.+|.++......+
T Consensus 7 ~k~vlVtGas~-gIG~~~a~~l~~~G~~vv~~~r~~~-~-------~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 77 (260)
T PRK07063 7 GKVALVTGAAQ-GIGAAIARAFAREGAAVALADLDAA-L-------AERAAAAIARDVAGARVLAVPADVTDAASVAAAV 77 (260)
T ss_pred CCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHH-H-------HHHHHHHHHhccCCceEEEEEccCCCHHHHHHHH
Confidence 57889998543 2334444433 13567888876532 2 2233445554 3443 3677888876543221
Q ss_pred -----cCCcccEEEEcC
Q 044601 90 -----RTHKFDRVIYNF 101 (213)
Q Consensus 90 -----~~~~FDrIiFNF 101 (213)
.....|.+|.|=
T Consensus 78 ~~~~~~~g~id~li~~a 94 (260)
T PRK07063 78 AAAEEAFGPLDVLVNNA 94 (260)
T ss_pred HHHHHHhCCCcEEEECC
Confidence 124689888873
No 336
>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]
Probab=27.75 E-value=71 Score=30.14 Aligned_cols=60 Identities=20% Similarity=0.450 Sum_probs=41.9
Q ss_pred HHHHHhCCCEEEEeeeccccCCCccccCCcccEEEEcCC-cCCCcccccchHHHHhhHHHHHHHH
Q 044601 64 VRELEERGCLVFYGVDAMQMSQHFFLRTHKFDRVIYNFP-HVGFIFRENSYCQIQLNKELVKGFL 127 (213)
Q Consensus 64 i~~L~~~g~~V~~gVDAt~L~~~~~l~~~~FDrIiFNFP-H~G~~~~e~~~~~i~~n~~Ll~~Ff 127 (213)
+.++++ |-+|.||.|+.++.... .+--|.=||+|| -.|..-.-+....+..+..|+-+-.
T Consensus 305 ~~q~qa-getVwFG~dvgq~s~rk---~Gimdtd~~~~~s~~g~~~~q~KA~RldY~eSLmTHAM 365 (444)
T COG3579 305 IKQMQA-GETVWFGCDVGQLSDRK---TGIMDTDIYDYESSLGINLTQDKAGRLDYGESLMTHAM 365 (444)
T ss_pred HHHHhc-CCcEEeecCchhhcccc---cceeeehhccchhhhCCCcccchhhccccchHHHHHHH
Confidence 445554 88999999999998775 577899999999 5565322223445666777776643
No 337
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=27.68 E-value=2.2e+02 Score=23.30 Aligned_cols=79 Identities=15% Similarity=0.101 Sum_probs=43.8
Q ss_pred CCeEEEEecCChhHHHHHHHHh-CCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEE-EEeeeccccCCCccc---
Q 044601 15 KQRILLVGEGDFSFSLCLAREF-GFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLV-FYGVDAMQMSQHFFL--- 89 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V-~~gVDAt~L~~~~~l--- 89 (213)
+++||+.|-.. ....+|++.+ ..+..|+++..... . .....+.+++.+..+ .+..|.++......+
T Consensus 4 ~~~vlItG~sg-~iG~~la~~l~~~g~~v~~~~r~~~-~-------~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 74 (258)
T PRK12429 4 GKVALVTGAAS-GIGLEIALALAKEGAKVVIADLNDE-A-------AAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDY 74 (258)
T ss_pred CCEEEEECCCc-hHHHHHHHHHHHCCCeEEEEeCCHH-H-------HHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 46899998533 2234444433 23567777766532 1 122344555566544 566788876543221
Q ss_pred ---cCCcccEEEEcCC
Q 044601 90 ---RTHKFDRVIYNFP 102 (213)
Q Consensus 90 ---~~~~FDrIiFNFP 102 (213)
.....|.||.|=.
T Consensus 75 ~~~~~~~~d~vi~~a~ 90 (258)
T PRK12429 75 AVETFGGVDILVNNAG 90 (258)
T ss_pred HHHHcCCCCEEEECCC
Confidence 1246899998764
No 338
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=27.53 E-value=42 Score=27.28 Aligned_cols=34 Identities=21% Similarity=0.425 Sum_probs=22.8
Q ss_pred CCCeEEEEecCChhHHHHH---HHHhCCCCeEEEeccCC
Q 044601 14 SKQRILLVGEGDFSFSLCL---AREFGFAHNMVATCLDT 49 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aL---a~~~~~~~~l~ATs~ds 49 (213)
+...|.++|||.|.++..= +..+ ..+++--.++.
T Consensus 69 ~~~vv~i~GDG~f~~~~~el~t~~~~--~lp~~~iv~NN 105 (178)
T cd02014 69 DRQVIALSGDGGFAMLMGDLITAVKY--NLPVIVVVFNN 105 (178)
T ss_pred CCcEEEEEcchHHHhhHHHHHHHHHh--CCCcEEEEEEC
Confidence 3578899999999987543 2233 34566667775
No 339
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=27.43 E-value=3.5e+02 Score=22.16 Aligned_cols=76 Identities=13% Similarity=0.133 Sum_probs=44.5
Q ss_pred CCCeEEEEecCChhHHHHHHHHhC-CCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCE-EEEeeeccccCCCccc--
Q 044601 14 SKQRILLVGEGDFSFSLCLAREFG-FAHNMVATCLDTQETIANKYSNAVDNVRELEERGCL-VFYGVDAMQMSQHFFL-- 89 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~-V~~gVDAt~L~~~~~l-- 89 (213)
++++||+.|=+.+ .-.++++.+- .+.+|++++....+ ...+.+++.+.. ..+.+|+++......+
T Consensus 4 ~~k~vlItGas~g-IG~~ia~~l~~~G~~vi~~~r~~~~----------~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 72 (248)
T TIGR01832 4 EGKVALVTGANTG-LGQGIAVGLAEAGADIVGAGRSEPS----------ETQQQVEALGRRFLSLTADLSDIEAIKALVD 72 (248)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCchHH----------HHHHHHHhcCCceEEEECCCCCHHHHHHHHH
Confidence 3678999997543 4555555542 35688888754321 122334444443 4678899887643211
Q ss_pred ----cCCcccEEEEc
Q 044601 90 ----RTHKFDRVIYN 100 (213)
Q Consensus 90 ----~~~~FDrIiFN 100 (213)
.....|.||.|
T Consensus 73 ~~~~~~~~~d~li~~ 87 (248)
T TIGR01832 73 SAVEEFGHIDILVNN 87 (248)
T ss_pred HHHHHcCCCCEEEEC
Confidence 12468999877
No 340
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=27.31 E-value=4.9e+02 Score=23.92 Aligned_cols=81 Identities=23% Similarity=0.310 Sum_probs=57.8
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCC----CEEEEeeeccccCCCcc
Q 044601 13 SSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERG----CLVFYGVDAMQMSQHFF 88 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g----~~V~~gVDAt~L~~~~~ 88 (213)
.++.+||=-|-|.=|+|.||+++.++.-+|..=-+. + . .+..++++.|+.| ++|.| =|.+... +.
T Consensus 104 ~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH--~---~---Ra~ka~eeFr~hgi~~~vt~~h-rDVc~~G--F~ 172 (314)
T KOG2915|consen 104 RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFH--E---T---RAEKALEEFREHGIGDNVTVTH-RDVCGSG--FL 172 (314)
T ss_pred CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEec--H---H---HHHHHHHHHHHhCCCcceEEEE-eecccCC--cc
Confidence 467899999999999999999999876677765553 2 1 2567789999886 23333 2444433 44
Q ss_pred ccCCcccEEEEcCCcC
Q 044601 89 LRTHKFDRVIYNFPHV 104 (213)
Q Consensus 89 l~~~~FDrIiFNFPH~ 104 (213)
.+...+|.|.-+-|-.
T Consensus 173 ~ks~~aDaVFLDlPaP 188 (314)
T KOG2915|consen 173 IKSLKADAVFLDLPAP 188 (314)
T ss_pred ccccccceEEEcCCCh
Confidence 5578899999888743
No 341
>PRK07677 short chain dehydrogenase; Provisional
Probab=27.00 E-value=2.4e+02 Score=23.37 Aligned_cols=78 Identities=17% Similarity=0.203 Sum_probs=42.7
Q ss_pred CCeEEEEecCChhHHHHHHHHh-CCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCC-EEEEeeeccccCCCccc---
Q 044601 15 KQRILLVGEGDFSFSLCLAREF-GFAHNMVATCLDTQETIANKYSNAVDNVRELEERGC-LVFYGVDAMQMSQHFFL--- 89 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~V~~gVDAt~L~~~~~l--- 89 (213)
++++|+.|=+.. -..++++.+ ..+.+|++++.+. +.+ ....+.++..+. ...+.+|.++......+
T Consensus 1 ~k~~lItG~s~g-iG~~ia~~l~~~G~~Vi~~~r~~-~~~-------~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 71 (252)
T PRK07677 1 EKVVIITGGSSG-MGKAMAKRFAEEGANVVITGRTK-EKL-------EEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQ 71 (252)
T ss_pred CCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCH-HHH-------HHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHH
Confidence 357888887664 233333332 1256888887763 211 222344444443 34678898875433221
Q ss_pred ---cCCcccEEEEcC
Q 044601 90 ---RTHKFDRVIYNF 101 (213)
Q Consensus 90 ---~~~~FDrIiFNF 101 (213)
.....|.||.|=
T Consensus 72 ~~~~~~~id~lI~~a 86 (252)
T PRK07677 72 IDEKFGRIDALINNA 86 (252)
T ss_pred HHHHhCCccEEEECC
Confidence 124689999884
No 342
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=26.99 E-value=34 Score=26.88 Aligned_cols=36 Identities=25% Similarity=0.471 Sum_probs=22.9
Q ss_pred CCCeEEEEecCChhHHH-HHHHHhCCCCeEEEeccCC
Q 044601 14 SKQRILLVGEGDFSFSL-CLAREFGFAHNMVATCLDT 49 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~-aLa~~~~~~~~l~ATs~ds 49 (213)
...-|+++|||.|.|+. .|+........|+--.++.
T Consensus 46 ~~~vv~i~GDG~f~~~~~el~ta~~~~~~v~~vv~nN 82 (153)
T PF02775_consen 46 DRPVVAITGDGSFLMSLQELATAVRYGLPVVIVVLNN 82 (153)
T ss_dssp TSEEEEEEEHHHHHHHGGGHHHHHHTTSSEEEEEEES
T ss_pred cceeEEecCCcceeeccchhHHHhhccceEEEEEEeC
Confidence 45678999999999983 2322222245666666665
No 343
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=26.68 E-value=85 Score=29.62 Aligned_cols=68 Identities=16% Similarity=0.186 Sum_probs=39.3
Q ss_pred CCCeEEEEecCChhHHHHH-HHHhCCCCeEEEeccCCHHHHHhhc------chH--HHHHHHHHhCCCEEEEeeeccccC
Q 044601 14 SKQRILLVGEGDFSFSLCL-AREFGFAHNMVATCLDTQETIANKY------SNA--VDNVRELEERGCLVFYGVDAMQMS 84 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aL-a~~~~~~~~l~ATs~ds~~~l~~kY------~~a--~~ni~~L~~~g~~V~~gVDAt~L~ 84 (213)
..++|++||-|+-..-.|- +..++ +.+|+ ..+......... |.. ..-++.+++.|+.++++.-.+.+.
T Consensus 280 ~gk~VvVIGgG~~g~e~A~~~~~~g-a~~Vt--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~ 356 (471)
T PRK12810 280 KGKHVVVIGGGDTGMDCVGTAIRQG-AKSVT--QRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFE 356 (471)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcC-CCeEE--EccccCCCccccccccCCcccchHHHHHHHHHcCCeEEeccCceEEE
Confidence 4789999999987776653 33444 23444 222211111111 000 013677888899999988777775
No 344
>PRK06125 short chain dehydrogenase; Provisional
Probab=26.64 E-value=2.9e+02 Score=23.00 Aligned_cols=79 Identities=15% Similarity=0.204 Sum_probs=42.8
Q ss_pred CCCeEEEEecCChhHHHHHHHHh-CCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhC-CCE-EEEeeeccccCCCccc-
Q 044601 14 SKQRILLVGEGDFSFSLCLAREF-GFAHNMVATCLDTQETIANKYSNAVDNVRELEER-GCL-VFYGVDAMQMSQHFFL- 89 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~-g~~-V~~gVDAt~L~~~~~l- 89 (213)
++++||+.|=+. ....++++.+ ..+.+|++++.+.+ .+ ....++|++. +.. ..+.+|.++..+...+
T Consensus 6 ~~k~vlItG~~~-giG~~ia~~l~~~G~~V~~~~r~~~-~~-------~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~ 76 (259)
T PRK06125 6 AGKRVLITGASK-GIGAAAAEAFAAEGCHLHLVARDAD-AL-------EALAADLRAAHGVDVAVHALDLSSPEAREQLA 76 (259)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHcCCEEEEEeCCHH-HH-------HHHHHHHHhhcCCceEEEEecCCCHHHHHHHH
Confidence 357899999532 2344444433 12458888876532 22 2223445443 443 4677888876543211
Q ss_pred -cCCcccEEEEcC
Q 044601 90 -RTHKFDRVIYNF 101 (213)
Q Consensus 90 -~~~~FDrIiFNF 101 (213)
.....|.||.|-
T Consensus 77 ~~~g~id~lv~~a 89 (259)
T PRK06125 77 AEAGDIDILVNNA 89 (259)
T ss_pred HHhCCCCEEEECC
Confidence 125688888763
No 345
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=26.63 E-value=2.3e+02 Score=24.84 Aligned_cols=37 Identities=24% Similarity=0.495 Sum_probs=22.2
Q ss_pred cCCCCCCeEEEEecCChh-HHHHHHHHhCCCCe-EEEeccC
Q 044601 10 NHYSSKQRILLVGEGDFS-FSLCLAREFGFAHN-MVATCLD 48 (213)
Q Consensus 10 ~~y~~~~~ILlVGEGnFS-FS~aLa~~~~~~~~-l~ATs~d 48 (213)
....++++||+.|.|... ++..||++.| .. +++|+-+
T Consensus 158 ~~~~~g~~vlI~g~g~vG~~a~~lak~~G--~~~v~~~~~~ 196 (343)
T cd05285 158 AGVRPGDTVLVFGAGPIGLLTAAVAKAFG--ATKVVVTDID 196 (343)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCC
Confidence 344668899998876433 2334466665 44 6666433
No 346
>PRK10126 tyrosine phosphatase; Provisional
Probab=26.42 E-value=1.2e+02 Score=23.89 Aligned_cols=76 Identities=14% Similarity=0.167 Sum_probs=42.9
Q ss_pred CeEEEEecCChh---HHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCC
Q 044601 16 QRILLVGEGDFS---FSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTH 92 (213)
Q Consensus 16 ~~ILlVGEGnFS---FS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~ 92 (213)
.+||+|--||=- .|-+|++++... +.+.|-=.....-. |-...-++.|++.|+.+ -+-=++.|... .-.
T Consensus 3 ~~iLFVC~gN~cRSpmAEa~~~~~~~~--~~v~SAG~~~~~g~--~~~~~a~~~l~~~Gid~-~~h~sr~lt~~---~~~ 74 (147)
T PRK10126 3 NNILVVCVGNICRSPTAERLLQRYHPE--LKVESAGLGALVGK--GADPTAISVAAEHQLSL-EGHCARQISRR---LCR 74 (147)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhcCC--eEEEeeeccCCCCC--CCCHHHHHHHHHcCCCc-CCCccccCCHH---Hhc
Confidence 689999999998 889999987643 33322221110001 11234578888877643 22223333322 135
Q ss_pred cccEEEE
Q 044601 93 KFDRVIY 99 (213)
Q Consensus 93 ~FDrIiF 99 (213)
.||.||=
T Consensus 75 ~~DlIl~ 81 (147)
T PRK10126 75 NYDLILT 81 (147)
T ss_pred cCCEEEE
Confidence 6899884
No 347
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=26.34 E-value=2.9e+02 Score=23.09 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=24.7
Q ss_pred cCCCCCCeEEEEe-cCChhHHHHH-HHHhCCCCeEEEeccC
Q 044601 10 NHYSSKQRILLVG-EGDFSFSLCL-AREFGFAHNMVATCLD 48 (213)
Q Consensus 10 ~~y~~~~~ILlVG-EGnFSFS~aL-a~~~~~~~~l~ATs~d 48 (213)
....++++||+.| .|.+..+++. +++. +..|++|+-+
T Consensus 140 ~~~~~g~~vlI~g~~~~~g~~~~~~a~~~--g~~v~~~~~~ 178 (325)
T cd08253 140 AGAKAGETVLVHGGSGAVGHAAVQLARWA--GARVIATASS 178 (325)
T ss_pred hCCCCCCEEEEEcCCchHHHHHHHHHHHc--CCEEEEEeCC
Confidence 4456789999999 5766655544 3444 4678887665
No 348
>PRK07890 short chain dehydrogenase; Provisional
Probab=26.13 E-value=3.7e+02 Score=22.08 Aligned_cols=80 Identities=18% Similarity=0.172 Sum_probs=44.5
Q ss_pred CCCCeEEEEecCChhHHHHHHHHh-CCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCE-EEEeeeccccCCCccc-
Q 044601 13 SSKQRILLVGEGDFSFSLCLAREF-GFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCL-VFYGVDAMQMSQHFFL- 89 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~aLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~-V~~gVDAt~L~~~~~l- 89 (213)
-++++||++|=+. ....+|++.+ ..+.+|+.++... +. .....+.++..|.+ ..+.+|.++......+
T Consensus 3 l~~k~vlItGa~~-~IG~~la~~l~~~G~~V~~~~r~~-~~-------~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 73 (258)
T PRK07890 3 LKGKVVVVSGVGP-GLGRTLAVRAARAGADVVLAARTA-ER-------LDEVAAEIDDLGRRALAVPTDITDEDQCANLV 73 (258)
T ss_pred cCCCEEEEECCCC-cHHHHHHHHHHHcCCEEEEEeCCH-HH-------HHHHHHHHHHhCCceEEEecCCCCHHHHHHHH
Confidence 3568899999654 3444444443 2356788777653 22 12234555555543 4678888775432110
Q ss_pred -----cCCcccEEEEcC
Q 044601 90 -----RTHKFDRVIYNF 101 (213)
Q Consensus 90 -----~~~~FDrIiFNF 101 (213)
+....|.||.|=
T Consensus 74 ~~~~~~~g~~d~vi~~a 90 (258)
T PRK07890 74 ALALERFGRVDALVNNA 90 (258)
T ss_pred HHHHHHcCCccEEEECC
Confidence 124678888763
No 349
>COG1432 Uncharacterized conserved protein [Function unknown]
Probab=26.06 E-value=1.5e+02 Score=24.63 Aligned_cols=29 Identities=31% Similarity=0.442 Sum_probs=20.0
Q ss_pred CeEEEE-ecCChhHHHHHHHHhCCCCeEEE
Q 044601 16 QRILLV-GEGDFSFSLCLAREFGFAHNMVA 44 (213)
Q Consensus 16 ~~ILlV-GEGnFSFS~aLa~~~~~~~~l~A 44 (213)
++|.|| |||||-=....++..|..+.|+.
T Consensus 112 D~ivl~SgD~DF~p~v~~~~~~G~rv~v~~ 141 (181)
T COG1432 112 DTIVLFSGDGDFIPLVEAARDKGKRVEVAG 141 (181)
T ss_pred CEEEEEcCCccHHHHHHHHHHcCCEEEEEe
Confidence 455555 99999999888888763333333
No 350
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=26.06 E-value=3.9e+02 Score=22.31 Aligned_cols=80 Identities=18% Similarity=0.160 Sum_probs=43.1
Q ss_pred CCCeEEEEecCChhHHHHHHHHh-CCCCeEEEeccCCHHHHHhhcchHHHHHHHHHh-CCCE-EEEeeeccccCCCccc-
Q 044601 14 SKQRILLVGEGDFSFSLCLAREF-GFAHNMVATCLDTQETIANKYSNAVDNVRELEE-RGCL-VFYGVDAMQMSQHFFL- 89 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~-~g~~-V~~gVDAt~L~~~~~l- 89 (213)
++++||+.|=+ =..-+++++.+ ..+.+|+.++..+.+.+ ....+.++. .|.+ ..+.+|.++..+...+
T Consensus 7 ~~k~vlItGas-~gIG~~ia~~l~~~G~~v~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 78 (260)
T PRK08416 7 KGKTLVISGGT-RGIGKAIVYEFAQSGVNIAFTYNSNVEEA-------NKIAEDLEQKYGIKAKAYPLNILEPETYKELF 78 (260)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEcCCCHHHH-------HHHHHHHHHhcCCceEEEEcCCCCHHHHHHHH
Confidence 35788888844 33344444433 13567777654443322 222334443 3543 4678898876543221
Q ss_pred -----cCCcccEEEEcC
Q 044601 90 -----RTHKFDRVIYNF 101 (213)
Q Consensus 90 -----~~~~FDrIiFNF 101 (213)
...++|.||.|=
T Consensus 79 ~~~~~~~g~id~lv~nA 95 (260)
T PRK08416 79 KKIDEDFDRVDFFISNA 95 (260)
T ss_pred HHHHHhcCCccEEEECc
Confidence 124689998885
No 351
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=26.03 E-value=3.8e+02 Score=22.12 Aligned_cols=79 Identities=16% Similarity=0.215 Sum_probs=44.1
Q ss_pred CCCeEEEEecCChhHHHHHHHHh-CCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCE-EEEeeeccccCCCccc--
Q 044601 14 SKQRILLVGEGDFSFSLCLAREF-GFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCL-VFYGVDAMQMSQHFFL-- 89 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~-V~~gVDAt~L~~~~~l-- 89 (213)
++++||++|=+. --..+|++.+ ..+.+|+.++.+.+ .+ ....++|++.|.. ..+-+|.++......+
T Consensus 10 ~~k~ilItGas~-~IG~~la~~l~~~G~~v~~~~r~~~-~~-------~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 80 (256)
T PRK06124 10 AGQVALVTGSAR-GLGFEIARALAGAGAHVLVNGRNAA-TL-------EAAVAALRAAGGAAEALAFDIADEEAVAAAFA 80 (256)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHcCCeEEEEeCCHH-HH-------HHHHHHHHhcCCceEEEEccCCCHHHHHHHHH
Confidence 468899998443 3344444433 12568888877632 22 2234556655543 3566788775432211
Q ss_pred ----cCCcccEEEEcC
Q 044601 90 ----RTHKFDRVIYNF 101 (213)
Q Consensus 90 ----~~~~FDrIiFNF 101 (213)
...+.|.||.|-
T Consensus 81 ~~~~~~~~id~vi~~a 96 (256)
T PRK06124 81 RIDAEHGRLDILVNNV 96 (256)
T ss_pred HHHHhcCCCCEEEECC
Confidence 124689888874
No 352
>PRK08643 acetoin reductase; Validated
Probab=25.81 E-value=3e+02 Score=22.71 Aligned_cols=78 Identities=17% Similarity=0.207 Sum_probs=43.2
Q ss_pred CCeEEEEecCChhHHHHHHHHh-CCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCE-EEEeeeccccCCCccc---
Q 044601 15 KQRILLVGEGDFSFSLCLAREF-GFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCL-VFYGVDAMQMSQHFFL--- 89 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~-V~~gVDAt~L~~~~~l--- 89 (213)
++++|+.|=..+ -..+|++.+ ..+.+|+.++.+.. . ......++++.+.. +.+.+|.++......+
T Consensus 2 ~k~~lItGas~g-iG~~la~~l~~~G~~v~~~~r~~~-~-------~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 72 (256)
T PRK08643 2 SKVALVTGAGQG-IGFAIAKRLVEDGFKVAIVDYNEE-T-------AQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQ 72 (256)
T ss_pred CCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCHH-H-------HHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 457888884432 344444443 13567888876632 1 12223445555544 3578898876532111
Q ss_pred ---cCCcccEEEEcC
Q 044601 90 ---RTHKFDRVIYNF 101 (213)
Q Consensus 90 ---~~~~FDrIiFNF 101 (213)
+..+.|.||.|=
T Consensus 73 ~~~~~~~id~vi~~a 87 (256)
T PRK08643 73 VVDTFGDLNVVVNNA 87 (256)
T ss_pred HHHHcCCCCEEEECC
Confidence 124689998875
No 353
>PRK05876 short chain dehydrogenase; Provisional
Probab=25.80 E-value=2.9e+02 Score=23.61 Aligned_cols=76 Identities=18% Similarity=0.101 Sum_probs=44.1
Q ss_pred CCeEEEEecCCh---hHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEE-EEeeeccccCCCccc-
Q 044601 15 KQRILLVGEGDF---SFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLV-FYGVDAMQMSQHFFL- 89 (213)
Q Consensus 15 ~~~ILlVGEGnF---SFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V-~~gVDAt~L~~~~~l- 89 (213)
++++|+.|=+.+ .++..|++ .+.+|+.+..+. +.+ .+.+++|+..|..+ .+.+|.++......+
T Consensus 6 ~k~vlVTGas~gIG~ala~~La~---~G~~Vv~~~r~~-~~l-------~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~ 74 (275)
T PRK05876 6 GRGAVITGGASGIGLATGTEFAR---RGARVVLGDVDK-PGL-------RQAVNHLRAEGFDVHGVMCDVRHREEVTHLA 74 (275)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH---CCCEEEEEeCCH-HHH-------HHHHHHHHhcCCeEEEEeCCCCCHHHHHHHH
Confidence 567899986653 33333443 246777776553 222 23456777767654 467898887644221
Q ss_pred -----cCCcccEEEEcC
Q 044601 90 -----RTHKFDRVIYNF 101 (213)
Q Consensus 90 -----~~~~FDrIiFNF 101 (213)
.....|.||.|=
T Consensus 75 ~~~~~~~g~id~li~nA 91 (275)
T PRK05876 75 DEAFRLLGHVDVVFSNA 91 (275)
T ss_pred HHHHHHcCCCCEEEECC
Confidence 124578777664
No 354
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=25.71 E-value=1e+02 Score=25.59 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=16.7
Q ss_pred CCeEEEEecCChhHHHHHHHHhC
Q 044601 15 KQRILLVGEGDFSFSLCLAREFG 37 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aLa~~~~ 37 (213)
+.=+|+-|||||+=-..-+++.|
T Consensus 107 D~~vLvSgD~DF~~Lv~~lre~G 129 (160)
T TIGR00288 107 DAVALVTRDADFLPVINKAKENG 129 (160)
T ss_pred CEEEEEeccHhHHHHHHHHHHCC
Confidence 45577788888887776677765
No 355
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=25.64 E-value=67 Score=26.20 Aligned_cols=33 Identities=18% Similarity=0.337 Sum_probs=22.1
Q ss_pred CCeEEEEecCChhHHHH-H--HHHhCCCCeEEEeccCC
Q 044601 15 KQRILLVGEGDFSFSLC-L--AREFGFAHNMVATCLDT 49 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~a-L--a~~~~~~~~l~ATs~ds 49 (213)
...|.++|||.|-++.. | +..+ +.+|+.-.++.
T Consensus 67 ~~vv~i~GDG~f~m~~~eL~ta~~~--~l~vi~vV~NN 102 (177)
T cd02010 67 RKVVAVSGDGGFMMNSQELETAVRL--KIPLVVLIWND 102 (177)
T ss_pred CcEEEEEcchHHHhHHHHHHHHHHH--CCCeEEEEEEC
Confidence 46788999999988873 3 3344 34566666664
No 356
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=25.62 E-value=1.4e+02 Score=27.20 Aligned_cols=82 Identities=15% Similarity=0.263 Sum_probs=46.7
Q ss_pred CCCeEEEEecCChhHHHHHH-HHhCCCCeEEEeccCCHHHHHhh-cch-H-HHHHHHHHhCCCEEEEeeeccccCCCc--
Q 044601 14 SKQRILLVGEGDFSFSLCLA-REFGFAHNMVATCLDTQETIANK-YSN-A-VDNVRELEERGCLVFYGVDAMQMSQHF-- 87 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa-~~~~~~~~l~ATs~ds~~~l~~k-Y~~-a-~~ni~~L~~~g~~V~~gVDAt~L~~~~-- 87 (213)
..++|++||-|.-..-.|.. +..+ ..| |-++..+.+... .+. . ..-.+.|++.|+.++.+..++.+....
T Consensus 143 ~~~~vvViGgG~ig~E~A~~l~~~g--~~V--tlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~ 218 (396)
T PRK09754 143 PERSVVIVGAGTIGLELAASATQRR--CKV--TVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVDGEKV 218 (396)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--CeE--EEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEcCCEE
Confidence 46899999999765554442 3334 333 223333333322 222 2 234677889999999887776664311
Q ss_pred --cccC---CcccEEEE
Q 044601 88 --FLRT---HKFDRVIY 99 (213)
Q Consensus 88 --~l~~---~~FDrIiF 99 (213)
.+.. -.+|.||+
T Consensus 219 ~v~l~~g~~i~aD~Vv~ 235 (396)
T PRK09754 219 ELTLQSGETLQADVVIY 235 (396)
T ss_pred EEEECCCCEEECCEEEE
Confidence 1111 34788887
No 357
>PRK11761 cysM cysteine synthase B; Provisional
Probab=25.59 E-value=2.4e+02 Score=24.95 Aligned_cols=51 Identities=8% Similarity=0.232 Sum_probs=35.2
Q ss_pred CCCeEEEEecCChhHHHHHH-HHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEE
Q 044601 14 SKQRILLVGEGDFSFSLCLA-REFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVF 75 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa-~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~ 75 (213)
+.+.|+..--||+.-|+|++ +.+|-+..|+. =+.. ...+++.++.+|++|+
T Consensus 62 ~g~~vv~aSsGN~g~alA~~a~~~G~~~~i~~--p~~~---------~~~k~~~~~~~GA~v~ 113 (296)
T PRK11761 62 PGDTLIEATSGNTGIALAMIAAIKGYRMKLIM--PENM---------SQERRAAMRAYGAELI 113 (296)
T ss_pred CCCEEEEeCCChHHHHHHHHHHHcCCCEEEEE--CCCC---------CHHHHHHHHHcCCEEE
Confidence 34779999999999999995 45553333333 2211 1367889999999885
No 358
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=25.58 E-value=1.2e+02 Score=26.61 Aligned_cols=37 Identities=16% Similarity=0.268 Sum_probs=24.6
Q ss_pred cCCCCCCeEEEEecCChhH-HHHHHHHhCCCCeEEEecc
Q 044601 10 NHYSSKQRILLVGEGDFSF-SLCLAREFGFAHNMVATCL 47 (213)
Q Consensus 10 ~~y~~~~~ILlVGEGnFSF-S~aLa~~~~~~~~l~ATs~ 47 (213)
....++++||+.|.|...- +..+|++.| ...+++|+-
T Consensus 170 ~~~~~g~~vlI~g~g~vG~~~~~~a~~~G-~~~v~~~~~ 207 (350)
T cd08256 170 ANIKFDDVVVLAGAGPLGLGMIGAARLKN-PKKLIVLDL 207 (350)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEcC
Confidence 3456789999988887774 445577776 334556543
No 359
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=25.58 E-value=3.2e+02 Score=22.71 Aligned_cols=78 Identities=17% Similarity=0.167 Sum_probs=43.4
Q ss_pred CCCeEEEEecCChhHHHHHHHHh-CCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCE-EEEeeeccccCCCccc--
Q 044601 14 SKQRILLVGEGDFSFSLCLAREF-GFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCL-VFYGVDAMQMSQHFFL-- 89 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~-V~~gVDAt~L~~~~~l-- 89 (213)
.+++||+.|=+. ....++++++ ..+..++.++.++. + ....+.+.+.|.. ..+.+|.++......+
T Consensus 14 ~~k~vlItGas~-gIG~~ia~~l~~~G~~v~~~~~~~~--~-------~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~ 83 (258)
T PRK06935 14 DGKVAIVTGGNT-GLGQGYAVALAKAGADIIITTHGTN--W-------DETRRLIEKEGRKVTFVQVDLTKPESAEKVVK 83 (258)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHCCCEEEEEeCCcH--H-------HHHHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence 368899998765 3445555544 23567777766521 1 1112233444433 4577898886643221
Q ss_pred ----cCCcccEEEEcC
Q 044601 90 ----RTHKFDRVIYNF 101 (213)
Q Consensus 90 ----~~~~FDrIiFNF 101 (213)
.....|.||.|=
T Consensus 84 ~~~~~~g~id~li~~a 99 (258)
T PRK06935 84 EALEEFGKIDILVNNA 99 (258)
T ss_pred HHHHHcCCCCEEEECC
Confidence 124689888774
No 360
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=25.53 E-value=3.1e+02 Score=22.23 Aligned_cols=55 Identities=16% Similarity=0.226 Sum_probs=38.6
Q ss_pred CCeEEEEecCChhHH-HHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEee
Q 044601 15 KQRILLVGEGDFSFS-LCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGV 78 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS-~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gV 78 (213)
+.+|-+||-.|.... ..+.+.+ +.+|.--.+++.+++. .-++++++.|+.|+-|=
T Consensus 77 ~~~Iavv~~~~~~~~~~~~~~ll--~~~i~~~~~~~~~e~~-------~~i~~~~~~G~~viVGg 132 (176)
T PF06506_consen 77 GPKIAVVGYPNIIPGLESIEELL--GVDIKIYPYDSEEEIE-------AAIKQAKAEGVDVIVGG 132 (176)
T ss_dssp TSEEEEEEESS-SCCHHHHHHHH--T-EEEEEEESSHHHHH-------HHHHHHHHTT--EEEES
T ss_pred CCcEEEEecccccHHHHHHHHHh--CCceEEEEECCHHHHH-------HHHHHHHHcCCcEEECC
Confidence 479999999999984 4455666 4688888888876554 45889999999887664
No 361
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=25.29 E-value=2.6e+02 Score=23.58 Aligned_cols=78 Identities=15% Similarity=0.122 Sum_probs=44.6
Q ss_pred CCCeEEEEecCChhHHHHHHHHh-CCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEE-EEeeeccccCCCccc--
Q 044601 14 SKQRILLVGEGDFSFSLCLAREF-GFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLV-FYGVDAMQMSQHFFL-- 89 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V-~~gVDAt~L~~~~~l-- 89 (213)
+++++|+.|=+. .-..++++.+ ..+.+|+++..+. +. .....++++..|..+ .+.+|.++......+
T Consensus 9 ~~k~vlVtGas~-giG~~ia~~l~~~G~~V~~~~r~~-~~-------~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~ 79 (278)
T PRK08277 9 KGKVAVITGGGG-VLGGAMAKELARAGAKVAILDRNQ-EK-------AEAVVAEIKAAGGEALAVKADVLDKESLEQARQ 79 (278)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHCCCEEEEEeCCH-HH-------HHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 357788888643 2334444443 2356888887653 21 223345566666544 567888876543221
Q ss_pred ----cCCcccEEEEc
Q 044601 90 ----RTHKFDRVIYN 100 (213)
Q Consensus 90 ----~~~~FDrIiFN 100 (213)
+..+.|.||.|
T Consensus 80 ~~~~~~g~id~li~~ 94 (278)
T PRK08277 80 QILEDFGPCDILING 94 (278)
T ss_pred HHHHHcCCCCEEEEC
Confidence 12468988887
No 362
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=25.08 E-value=1.6e+02 Score=25.95 Aligned_cols=62 Identities=18% Similarity=0.209 Sum_probs=38.4
Q ss_pred CeEEEEec-CChhHHHHHHHHhC-CCCeEEEeccCCH-HHHHhhcc---------hHHHHHHHHHhCCCEEEEeeeccc
Q 044601 16 QRILLVGE-GDFSFSLCLAREFG-FAHNMVATCLDTQ-ETIANKYS---------NAVDNVRELEERGCLVFYGVDAMQ 82 (213)
Q Consensus 16 ~~ILlVGE-GnFSFS~aLa~~~~-~~~~l~ATs~ds~-~~l~~kY~---------~a~~ni~~L~~~g~~V~~gVDAt~ 82 (213)
++||++|= |+ +..|++.+. .+..+++|+-..+ .++..+.+ +..+-.+.|++.++.++ ||||.
T Consensus 1 m~ILvlGGT~e---gr~la~~L~~~g~~v~~s~~t~~~~~~~~~~g~~~v~~g~l~~~~l~~~l~~~~i~~V--IDAtH 74 (256)
T TIGR00715 1 MTVLLMGGTVD---SRAIAKGLIAQGIEILVTVTTSEGKHLYPIHQALTVHTGALDPQELREFLKRHSIDIL--VDATH 74 (256)
T ss_pred CeEEEEechHH---HHHHHHHHHhCCCeEEEEEccCCccccccccCCceEEECCCCHHHHHHHHHhcCCCEE--EEcCC
Confidence 47899876 53 888887652 3567777766643 23333331 23343477778888776 78774
No 363
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=24.92 E-value=1.2e+02 Score=28.53 Aligned_cols=66 Identities=18% Similarity=0.348 Sum_probs=37.5
Q ss_pred CCeEEEEecCChhHHHHH-HHHhCCCCeEEEeccCCHHHHHhhcch-H-HHHHHHHHhCCCEEEEeeeccccC
Q 044601 15 KQRILLVGEGDFSFSLCL-AREFGFAHNMVATCLDTQETIANKYSN-A-VDNVRELEERGCLVFYGVDAMQMS 84 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aL-a~~~~~~~~l~ATs~ds~~~l~~kY~~-a-~~ni~~L~~~g~~V~~gVDAt~L~ 84 (213)
.++|++||-|.=....|. +.+++..+.|+ +..+.+...++. . ..-.+.|++.|+.|+.+..++.+.
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli----~~~~~il~~~~~~~~~~l~~~l~~~gI~i~~~~~v~~i~ 248 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVV----EAADRILPTEDAELSKEVARLLKKLGVRVVTGAKVLGLT 248 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEE----EecCccCCcCCHHHHHHHHHHHHhcCCEEEeCcEEEEEE
Confidence 479999998864444333 23344333333 322223332222 2 223467889999999887776664
No 364
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=24.87 E-value=3e+02 Score=24.20 Aligned_cols=87 Identities=15% Similarity=0.191 Sum_probs=55.0
Q ss_pred CCeEEEEecCChhHHHHH-HHHhCCCCeEEEeccCCHHHHHhhc--chH-HHHHHHHHhCCCEEEEeeeccccCCCc---
Q 044601 15 KQRILLVGEGDFSFSLCL-AREFGFAHNMVATCLDTQETIANKY--SNA-VDNVRELEERGCLVFYGVDAMQMSQHF--- 87 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aL-a~~~~~~~~l~ATs~ds~~~l~~kY--~~a-~~ni~~L~~~g~~V~~gVDAt~L~~~~--- 87 (213)
..++++||-|=..+-+|- ++..|..+.+ ++..+.+.... +.. ..-.+.|++.|+.++.+.....+....
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l----~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~ 211 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTL----IEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTL 211 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEE----EEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcc
Confidence 579999999998888877 4444433333 33333332222 333 345688899999888777766666431
Q ss_pred -----ccc---CCcccEEEEcCCcCC
Q 044601 88 -----FLR---THKFDRVIYNFPHVG 105 (213)
Q Consensus 88 -----~l~---~~~FDrIiFNFPH~G 105 (213)
... ...+|.++.--|+.+
T Consensus 212 ~~~~~~~~~~~~~~~d~~~~~~g~~p 237 (415)
T COG0446 212 VVERVVGIDGEEIKADLVIIGPGERP 237 (415)
T ss_pred eeeEEEEeCCcEEEeeEEEEeecccc
Confidence 111 245899998888877
No 365
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=24.82 E-value=4.7e+02 Score=22.77 Aligned_cols=78 Identities=22% Similarity=0.148 Sum_probs=45.0
Q ss_pred CCCeEEEEecCC---hhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEE-EEeeeccccCCCccc
Q 044601 14 SKQRILLVGEGD---FSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLV-FYGVDAMQMSQHFFL 89 (213)
Q Consensus 14 ~~~~ILlVGEGn---FSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V-~~gVDAt~L~~~~~l 89 (213)
+++++|+.|=+. ...+..|+++ +.+|+.....+.+. ....+++|++.|..+ .+..|+++......+
T Consensus 11 ~~k~~lVTGas~gIG~~ia~~L~~~---Ga~Vv~~~~~~~~~-------~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~ 80 (306)
T PRK07792 11 SGKVAVVTGAAAGLGRAEALGLARL---GATVVVNDVASALD-------ASDVLDEIRAAGAKAVAVAGDISQRATADEL 80 (306)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHC---CCEEEEecCCchhH-------HHHHHHHHHhcCCeEEEEeCCCCCHHHHHHH
Confidence 467899998765 3334444432 45677665543221 234456677767654 677888875432211
Q ss_pred -----cCCcccEEEEcC
Q 044601 90 -----RTHKFDRVIYNF 101 (213)
Q Consensus 90 -----~~~~FDrIiFNF 101 (213)
+..+.|.||.|=
T Consensus 81 ~~~~~~~g~iD~li~nA 97 (306)
T PRK07792 81 VATAVGLGGLDIVVNNA 97 (306)
T ss_pred HHHHHHhCCCCEEEECC
Confidence 124689998874
No 366
>PRK06841 short chain dehydrogenase; Provisional
Probab=24.74 E-value=2.6e+02 Score=23.06 Aligned_cols=77 Identities=10% Similarity=0.014 Sum_probs=41.2
Q ss_pred CCeEEEEecCChhHHHHHHHHh-CCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccc----
Q 044601 15 KQRILLVGEGDFSFSLCLAREF-GFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFL---- 89 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l---- 89 (213)
+++||+.|=+. ....++++.+ ..+..|+.++.+... . .-.+.+.. +-...+.+|+++..+...+
T Consensus 15 ~k~vlItGas~-~IG~~la~~l~~~G~~Vi~~~r~~~~--~-------~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~ 83 (255)
T PRK06841 15 GKVAVVTGGAS-GIGHAIAELFAAKGARVALLDRSEDV--A-------EVAAQLLG-GNAKGLVCDVSDSQSVEAAVAAV 83 (255)
T ss_pred CCEEEEECCCC-hHHHHHHHHHHHCCCEEEEEeCCHHH--H-------HHHHHhhC-CceEEEEecCCCHHHHHHHHHHH
Confidence 57899998544 2333343333 125678888776321 1 11122222 2223678898877643221
Q ss_pred --cCCcccEEEEcCC
Q 044601 90 --RTHKFDRVIYNFP 102 (213)
Q Consensus 90 --~~~~FDrIiFNFP 102 (213)
.....|.||+|=-
T Consensus 84 ~~~~~~~d~vi~~ag 98 (255)
T PRK06841 84 ISAFGRIDILVNSAG 98 (255)
T ss_pred HHHhCCCCEEEECCC
Confidence 1246898888753
No 367
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=24.69 E-value=3e+02 Score=23.08 Aligned_cols=51 Identities=18% Similarity=0.237 Sum_probs=33.3
Q ss_pred CCeEEEEecCChhHHHHHH-HHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEE
Q 044601 15 KQRILLVGEGDFSFSLCLA-REFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFY 76 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aLa-~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~ 76 (213)
...|..-+-||+.-|+|.+ +.++ ..+++-.-... ...+++.++..|++|+.
T Consensus 50 ~~~vv~~ssGN~g~alA~~a~~~g--~~~~v~~p~~~---------~~~~~~~~~~~Ga~v~~ 101 (244)
T cd00640 50 KGVIIESTGGNTGIALAAAAARLG--LKCTIVMPEGA---------SPEKVAQMRALGAEVVL 101 (244)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHcC--CCEEEEECCCC---------CHHHHHHHHHCCCEEEE
Confidence 4667777779999999994 4554 33333222211 24678899999998753
No 368
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=24.58 E-value=78 Score=27.53 Aligned_cols=28 Identities=21% Similarity=0.382 Sum_probs=25.0
Q ss_pred hhcchHHHHHHHHHhCCCEEEEeeeccc
Q 044601 55 NKYSNAVDNVRELEERGCLVFYGVDAMQ 82 (213)
Q Consensus 55 ~kY~~a~~ni~~L~~~g~~V~~gVDAt~ 82 (213)
++||+..+-++.|++.|++|+.-||..-
T Consensus 63 ~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 63 GKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred hhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 6899999999999999999998888754
No 369
>PRK08177 short chain dehydrogenase; Provisional
Probab=24.42 E-value=2.2e+02 Score=23.25 Aligned_cols=75 Identities=19% Similarity=0.222 Sum_probs=38.2
Q ss_pred CeEEEEecCChhHHHHHHHHh-CCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCcc----cc
Q 044601 16 QRILLVGEGDFSFSLCLAREF-GFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFF----LR 90 (213)
Q Consensus 16 ~~ILlVGEGnFSFS~aLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~----l~ 90 (213)
+++|++|=.. ....++++.+ ..+.+|++++.+..+ + ..++.+. ++. .+.+|.++...... +.
T Consensus 2 k~vlItG~sg-~iG~~la~~l~~~G~~V~~~~r~~~~-~--------~~~~~~~--~~~-~~~~D~~d~~~~~~~~~~~~ 68 (225)
T PRK08177 2 RTALIIGASR-GLGLGLVDRLLERGWQVTATVRGPQQ-D--------TALQALP--GVH-IEKLDMNDPASLDQLLQRLQ 68 (225)
T ss_pred CEEEEeCCCc-hHHHHHHHHHHhCCCEEEEEeCCCcc-h--------HHHHhcc--ccc-eEEcCCCCHHHHHHHHHHhh
Confidence 4688888443 2233333333 125688888766321 1 1122221 332 34567776543211 12
Q ss_pred CCcccEEEEcCCc
Q 044601 91 THKFDRVIYNFPH 103 (213)
Q Consensus 91 ~~~FDrIiFNFPH 103 (213)
...+|.||.|-.-
T Consensus 69 ~~~id~vi~~ag~ 81 (225)
T PRK08177 69 GQRFDLLFVNAGI 81 (225)
T ss_pred cCCCCEEEEcCcc
Confidence 3579999988644
No 370
>PRK07832 short chain dehydrogenase; Provisional
Probab=24.19 E-value=2.4e+02 Score=23.79 Aligned_cols=76 Identities=13% Similarity=0.132 Sum_probs=41.8
Q ss_pred eEEEEecCChhHHHHHHHHh-CCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCE--EEEeeeccccCCCccc----
Q 044601 17 RILLVGEGDFSFSLCLAREF-GFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCL--VFYGVDAMQMSQHFFL---- 89 (213)
Q Consensus 17 ~ILlVGEGnFSFS~aLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~--V~~gVDAt~L~~~~~l---- 89 (213)
++|+.|=+. ....++++.+ ..+.+|+++..+. +.+ ....++++..|.. ..+.+|.++......+
T Consensus 2 ~vlItGas~-giG~~la~~la~~G~~vv~~~r~~-~~~-------~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 72 (272)
T PRK07832 2 RCFVTGAAS-GIGRATALRLAAQGAELFLTDRDA-DGL-------AQTVADARALGGTVPEHRALDISDYDAVAAFAADI 72 (272)
T ss_pred EEEEeCCCC-HHHHHHHHHHHHCCCEEEEEeCCH-HHH-------HHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHH
Confidence 678888654 4444555443 1356788876653 222 2334555555543 3357888875532211
Q ss_pred --cCCcccEEEEcC
Q 044601 90 --RTHKFDRVIYNF 101 (213)
Q Consensus 90 --~~~~FDrIiFNF 101 (213)
.....|.||.|-
T Consensus 73 ~~~~~~id~lv~~a 86 (272)
T PRK07832 73 HAAHGSMDVVMNIA 86 (272)
T ss_pred HHhcCCCCEEEECC
Confidence 124589888775
No 371
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=24.18 E-value=83 Score=28.29 Aligned_cols=28 Identities=18% Similarity=0.259 Sum_probs=25.0
Q ss_pred hhcchHHHHHHHHHhCCCEEEEeeeccc
Q 044601 55 NKYSNAVDNVRELEERGCLVFYGVDAMQ 82 (213)
Q Consensus 55 ~kY~~a~~ni~~L~~~g~~V~~gVDAt~ 82 (213)
++||+..+-|++|++.|++|+..||..-
T Consensus 63 ~~FPdp~~mi~~L~~~G~kv~~~i~P~v 90 (319)
T cd06591 63 ERFPDPKAMVRELHEMNAELMISIWPTF 90 (319)
T ss_pred hhCCCHHHHHHHHHHCCCEEEEEecCCc
Confidence 5899999999999999999999888764
No 372
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=24.11 E-value=2e+02 Score=21.63 Aligned_cols=15 Identities=13% Similarity=0.040 Sum_probs=12.4
Q ss_pred CcccEEEEcCCcCCC
Q 044601 92 HKFDRVIYNFPHVGF 106 (213)
Q Consensus 92 ~~FDrIiFNFPH~G~ 106 (213)
...|.||||.+-.+.
T Consensus 56 ~~~d~vvfd~~Lsp~ 70 (95)
T PF13167_consen 56 LDADLVVFDNELSPS 70 (95)
T ss_pred cCCCEEEECCCCCHH
Confidence 457999999998774
No 373
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=24.10 E-value=3.5e+02 Score=24.18 Aligned_cols=80 Identities=19% Similarity=0.221 Sum_probs=51.1
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHH-hCCCEEEEeeeccccCCCcccc
Q 044601 12 YSSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELE-ERGCLVFYGVDAMQMSQHFFLR 90 (213)
Q Consensus 12 y~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~-~~g~~V~~gVDAt~L~~~~~l~ 90 (213)
..++++||=||=|-=+++..|++. +..++|.-.|.. +.+ .+.+++.... ...++++++ |+.++.
T Consensus 34 ~~~~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~~--li~---~l~~~~~~~~~~~~v~ii~~-Dal~~~------ 98 (294)
T PTZ00338 34 IKPTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPR--MVA---ELKKRFQNSPLASKLEVIEG-DALKTE------ 98 (294)
T ss_pred CCCcCEEEEecCchHHHHHHHHHh---CCcEEEEECCHH--HHH---HHHHHHHhcCCCCcEEEEEC-CHhhhc------
Confidence 356789999988887888888875 346888777732 222 2334443322 123455544 887643
Q ss_pred CCcccEEEEcCCcCCC
Q 044601 91 THKFDRVIYNFPHVGF 106 (213)
Q Consensus 91 ~~~FDrIiFNFPH~G~ 106 (213)
...||.||-|-|--..
T Consensus 99 ~~~~d~VvaNlPY~Is 114 (294)
T PTZ00338 99 FPYFDVCVANVPYQIS 114 (294)
T ss_pred ccccCEEEecCCcccC
Confidence 1358999999998764
No 374
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=24.07 E-value=74 Score=24.32 Aligned_cols=26 Identities=12% Similarity=0.419 Sum_probs=19.3
Q ss_pred cccccCCCCCCeEEEEecCChhHHHHH
Q 044601 6 EKWSNHYSSKQRILLVGEGDFSFSLCL 32 (213)
Q Consensus 6 ~k~~~~y~~~~~ILlVGEGnFSFS~aL 32 (213)
+++...+.+.++|.++|-|. |+..|.
T Consensus 4 ~~~a~~~~~~~~i~~~G~G~-s~~~a~ 29 (153)
T cd05009 4 KELAEKLKEAKSFYVLGRGP-NYGTAL 29 (153)
T ss_pred HHHHHHHhccCcEEEEcCCC-CHHHHH
Confidence 45566677899999999996 555554
No 375
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=24.01 E-value=44 Score=26.82 Aligned_cols=34 Identities=18% Similarity=0.576 Sum_probs=23.5
Q ss_pred CCCeEEEEecCChhHHH-HH--HHHhCCCCeEEEeccCC
Q 044601 14 SKQRILLVGEGDFSFSL-CL--AREFGFAHNMVATCLDT 49 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~-aL--a~~~~~~~~l~ATs~ds 49 (213)
....|.++|||.|.+.. +| +..+ ..+++--.++.
T Consensus 67 ~~~vv~i~GDG~f~~~~~el~ta~~~--~~p~~~iV~nN 103 (178)
T cd02002 67 DRKVVAIIGDGSFMYTIQALWTAARY--GLPVTVVILNN 103 (178)
T ss_pred CCeEEEEEcCchhhccHHHHHHHHHh--CCCeEEEEEcC
Confidence 35688999999998764 22 3333 45677777775
No 376
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=23.62 E-value=95 Score=25.43 Aligned_cols=12 Identities=58% Similarity=1.071 Sum_probs=5.1
Q ss_pred eEEEEecCChhH
Q 044601 17 RILLVGEGDFSF 28 (213)
Q Consensus 17 ~ILlVGEGnFSF 28 (213)
.|.++|||.|-+
T Consensus 71 vv~i~GDG~f~~ 82 (183)
T cd02005 71 VILLVGDGSFQM 82 (183)
T ss_pred EEEEECCchhhc
Confidence 344444444433
No 377
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=23.49 E-value=2.8e+02 Score=24.28 Aligned_cols=78 Identities=13% Similarity=0.197 Sum_probs=43.8
Q ss_pred CCeEEEEecCChhHHHHHHHHhC-CC-CeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEE-EEeeeccccCCCccc--
Q 044601 15 KQRILLVGEGDFSFSLCLAREFG-FA-HNMVATCLDTQETIANKYSNAVDNVRELEERGCLV-FYGVDAMQMSQHFFL-- 89 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aLa~~~~-~~-~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V-~~gVDAt~L~~~~~l-- 89 (213)
.+++|+.|= .=.--+++++.+. .+ ..|+.++.+.. .+ .+-.++|+..+..+ .+.+|.++......+
T Consensus 3 ~k~vlITGa-s~GIG~aia~~L~~~G~~~V~l~~r~~~-~~-------~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~ 73 (314)
T TIGR01289 3 KPTVIITGA-SSGLGLYAAKALAATGEWHVIMACRDFL-KA-------EQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQ 73 (314)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHcCCCEEEEEeCCHH-HH-------HHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHH
Confidence 357788874 3345555555442 34 68888876632 22 12233444444433 567888877643221
Q ss_pred ----cCCcccEEEEcC
Q 044601 90 ----RTHKFDRVIYNF 101 (213)
Q Consensus 90 ----~~~~FDrIiFNF 101 (213)
+....|.+|.|=
T Consensus 74 ~~~~~~~~iD~lI~nA 89 (314)
T TIGR01289 74 QFRESGRPLDALVCNA 89 (314)
T ss_pred HHHHhCCCCCEEEECC
Confidence 135689999884
No 378
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=23.41 E-value=3.1e+02 Score=22.56 Aligned_cols=78 Identities=14% Similarity=0.062 Sum_probs=43.5
Q ss_pred CCeEEEEecCChhHHHHHHHHh-CCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEE-EEeeeccccCCCccc---
Q 044601 15 KQRILLVGEGDFSFSLCLAREF-GFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLV-FYGVDAMQMSQHFFL--- 89 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V-~~gVDAt~L~~~~~l--- 89 (213)
.++||+.|=..+ -..+|++.+ ..+.+|++++.+.. . ..+.++.+++.|..+ .+..|.++......+
T Consensus 7 ~~~vlItGasg~-iG~~la~~l~~~G~~v~~~~r~~~-~-------~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 77 (262)
T PRK13394 7 GKTAVVTGAASG-IGKEIALELARAGAAVAIADLNQD-G-------ANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDK 77 (262)
T ss_pred CCEEEEECCCCh-HHHHHHHHHHHCCCeEEEEeCChH-H-------HHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHH
Confidence 578999987542 233333332 23567888877642 1 123345566667655 467787776543211
Q ss_pred ---cCCcccEEEEcC
Q 044601 90 ---RTHKFDRVIYNF 101 (213)
Q Consensus 90 ---~~~~FDrIiFNF 101 (213)
.....|.||.|=
T Consensus 78 ~~~~~~~~d~vi~~a 92 (262)
T PRK13394 78 VAERFGSVDILVSNA 92 (262)
T ss_pred HHHHcCCCCEEEECC
Confidence 124578887763
No 379
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=23.35 E-value=80 Score=25.61 Aligned_cols=14 Identities=29% Similarity=0.510 Sum_probs=7.1
Q ss_pred CeEEEEecCChhHH
Q 044601 16 QRILLVGEGDFSFS 29 (213)
Q Consensus 16 ~~ILlVGEGnFSFS 29 (213)
..|.++|||.|-++
T Consensus 70 ~Vv~i~GDGsf~m~ 83 (175)
T cd02009 70 PTVLLTGDLSFLHD 83 (175)
T ss_pred CEEEEEehHHHHHh
Confidence 34455555555553
No 380
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=23.25 E-value=1.6e+02 Score=25.83 Aligned_cols=37 Identities=19% Similarity=0.180 Sum_probs=24.4
Q ss_pred CCCCCCeEEEEecCChhHHHH-HHHHhCCCCeEEEeccC
Q 044601 11 HYSSKQRILLVGEGDFSFSLC-LAREFGFAHNMVATCLD 48 (213)
Q Consensus 11 ~y~~~~~ILlVGEGnFSFS~a-La~~~~~~~~l~ATs~d 48 (213)
...++++||+.|.|....+.+ +|++.| ...+++|+-+
T Consensus 163 ~~~~g~~vlI~g~g~iG~~~~~lak~~G-~~~v~~~~~~ 200 (351)
T cd08285 163 NIKLGDTVAVFGIGPVGLMAVAGARLRG-AGRIIAVGSR 200 (351)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCC
Confidence 456689999999886664443 466665 3357776554
No 381
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=23.25 E-value=4.1e+02 Score=21.63 Aligned_cols=80 Identities=15% Similarity=0.128 Sum_probs=45.4
Q ss_pred CCeEEEEecCChhHHHHHHHHhC-CCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEE-EEeeeccccCCCccc---
Q 044601 15 KQRILLVGEGDFSFSLCLAREFG-FAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLV-FYGVDAMQMSQHFFL--- 89 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V-~~gVDAt~L~~~~~l--- 89 (213)
.++||+.|=+. .--.+|++++. .+.+++.++..+.+.+. ..+..+++.|+.+ .+.+|.+.......+
T Consensus 6 ~~~vlitGasg-~iG~~l~~~l~~~g~~v~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 77 (252)
T PRK06077 6 DKVVVVTGSGR-GIGRAIAVRLAKEGSLVVVNAKKRAEEMN-------ETLKMVKENGGEGIGVLADVSTREGCETLAKA 77 (252)
T ss_pred CcEEEEeCCCC-hHHHHHHHHHHHCCCEEEEEeCCChHHHH-------HHHHHHHHcCCeeEEEEeccCCHHHHHHHHHH
Confidence 47899999544 33455555442 35677665544433222 2345566666544 567888776543211
Q ss_pred ---cCCcccEEEEcCC
Q 044601 90 ---RTHKFDRVIYNFP 102 (213)
Q Consensus 90 ---~~~~FDrIiFNFP 102 (213)
.....|.||+|=.
T Consensus 78 ~~~~~~~~d~vi~~ag 93 (252)
T PRK06077 78 TIDRYGVADILVNNAG 93 (252)
T ss_pred HHHHcCCCCEEEECCC
Confidence 1246899988864
No 382
>PRK06988 putative formyltransferase; Provisional
Probab=23.19 E-value=1.4e+02 Score=27.00 Aligned_cols=34 Identities=18% Similarity=0.171 Sum_probs=18.6
Q ss_pred CeEEEEecCChhHH-HHHHHHhCCCCeEEEeccCC
Q 044601 16 QRILLVGEGDFSFS-LCLAREFGFAHNMVATCLDT 49 (213)
Q Consensus 16 ~~ILlVGEGnFSFS-~aLa~~~~~~~~l~ATs~ds 49 (213)
+||++.|.++|+.- +-..-..+-....|-|.-|.
T Consensus 3 mkIvf~Gs~~~a~~~L~~L~~~~~~i~~Vvt~~d~ 37 (312)
T PRK06988 3 PRAVVFAYHNVGVRCLQVLLARGVDVALVVTHEDN 37 (312)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCCEEEEEcCCCC
Confidence 68999999996652 22111112233445566554
No 383
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=23.17 E-value=1.3e+02 Score=26.21 Aligned_cols=35 Identities=17% Similarity=0.331 Sum_probs=20.4
Q ss_pred CCCCCCeEEEEecCChhHH-HHHHHHhCCCCeEEEec
Q 044601 11 HYSSKQRILLVGEGDFSFS-LCLAREFGFAHNMVATC 46 (213)
Q Consensus 11 ~y~~~~~ILlVGEGnFSFS-~aLa~~~~~~~~l~ATs 46 (213)
...++++||+.|.|-..=+ ..+|+..|. ..+++|+
T Consensus 158 ~~~~g~~VlI~g~g~vg~~~~~la~~~G~-~~v~~~~ 193 (341)
T cd08262 158 RLTPGEVALVIGCGPIGLAVIAALKARGV-GPIVASD 193 (341)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEEC
Confidence 3456899999997644422 234666652 2355543
No 384
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=23.17 E-value=2.1e+02 Score=19.67 Aligned_cols=34 Identities=18% Similarity=0.188 Sum_probs=25.3
Q ss_pred CCCeEEEEeccCCCCCcccHHhHHHHhCcEEEEEe
Q 044601 137 ENGEIHVTHKEGDPYNKWELVKKAEKIGLTLQEVV 171 (213)
Q Consensus 137 ~~G~ihvTl~~~~py~~W~i~~lA~~~gl~l~~~~ 171 (213)
+.|++..-+.+ .|....||..+|+..|+.+....
T Consensus 24 ~~G~~l~V~~d-~~~s~~ni~~~~~~~g~~v~~~~ 57 (69)
T cd03422 24 KPGEILEVISD-CPQSINNIPIDARNHGYKVLAIE 57 (69)
T ss_pred CCCCEEEEEec-CchHHHHHHHHHHHcCCEEEEEE
Confidence 35665444554 46799999999999999997654
No 385
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=23.03 E-value=1.3e+02 Score=30.46 Aligned_cols=55 Identities=20% Similarity=0.309 Sum_probs=34.4
Q ss_pred hhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHH---HHHHhCCCEEEEeeeccccCCC
Q 044601 26 FSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNV---RELEERGCLVFYGVDAMQMSQH 86 (213)
Q Consensus 26 FSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni---~~L~~~g~~V~~gVDAt~L~~~ 86 (213)
=..-.||.++...+..|++-.= |+..+.+ ..|+ +.|++.||.|+||+..-+-|..
T Consensus 371 s~ii~aL~~Aa~~Gk~V~v~ve-----LkArfde-~~ni~wa~~le~aG~~viyg~~~~k~H~K 428 (672)
T TIGR03705 371 SPIIDALIEAAENGKEVTVVVE-----LKARFDE-EANIRWARRLEEAGVHVVYGVVGLKTHAK 428 (672)
T ss_pred cHHHHHHHHHHHcCCEEEEEEE-----ehhhccc-hhhHHHHHHHHHcCCEEEEcCCCeeeeeE
Confidence 4566777666544555555321 3344433 3344 5899999999999988766644
No 386
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=22.94 E-value=3.3e+02 Score=22.34 Aligned_cols=73 Identities=22% Similarity=0.195 Sum_probs=46.5
Q ss_pred EEEEe-cCChhHH--HHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCCcc
Q 044601 18 ILLVG-EGDFSFS--LCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTHKF 94 (213)
Q Consensus 18 ILlVG-EGnFSFS--~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~~F 94 (213)
||++| -|++--+ .+|++ .+..|+|-+.+. ...-.+.|++.|+.|. .+|..+...-.. .-...
T Consensus 1 I~V~GatG~~G~~v~~~L~~---~~~~V~~l~R~~----------~~~~~~~l~~~g~~vv-~~d~~~~~~l~~-al~g~ 65 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLS---AGFSVRALVRDP----------SSDRAQQLQALGAEVV-EADYDDPESLVA-ALKGV 65 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHH---TTGCEEEEESSS----------HHHHHHHHHHTTTEEE-ES-TT-HHHHHH-HHTTC
T ss_pred CEEECCccHHHHHHHHHHHh---CCCCcEEEEecc----------chhhhhhhhcccceEe-ecccCCHHHHHH-HHcCC
Confidence 67777 4765433 33333 467899999987 2234677888999887 888765432110 01458
Q ss_pred cEEEEcCCcCC
Q 044601 95 DRVIYNFPHVG 105 (213)
Q Consensus 95 DrIiFNFPH~G 105 (213)
|+|+..=|...
T Consensus 66 d~v~~~~~~~~ 76 (233)
T PF05368_consen 66 DAVFSVTPPSH 76 (233)
T ss_dssp SEEEEESSCSC
T ss_pred ceEEeecCcch
Confidence 99999988664
No 387
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=22.87 E-value=1.3e+02 Score=26.54 Aligned_cols=15 Identities=33% Similarity=0.674 Sum_probs=13.5
Q ss_pred CcccEEEEcCCcCCC
Q 044601 92 HKFDRVIYNFPHVGF 106 (213)
Q Consensus 92 ~~FDrIiFNFPH~G~ 106 (213)
..||+|||+-|=+|.
T Consensus 111 ~~yD~iVvDtaPtgh 125 (284)
T TIGR00345 111 NEFDVVIFDTAPTGH 125 (284)
T ss_pred ccCCEEEECCCChHH
Confidence 569999999999994
No 388
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=22.72 E-value=3.4e+02 Score=22.12 Aligned_cols=78 Identities=15% Similarity=0.131 Sum_probs=42.8
Q ss_pred CCeEEEEecCChhHHHHHHHHh-CCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCC-EEEEeeeccccCCCccc---
Q 044601 15 KQRILLVGEGDFSFSLCLAREF-GFAHNMVATCLDTQETIANKYSNAVDNVRELEERGC-LVFYGVDAMQMSQHFFL--- 89 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~V~~gVDAt~L~~~~~l--- 89 (213)
+++||++|=.. ....+|++.+ ..+.+|++++..... + ......++. +. ...+-.|.++......+
T Consensus 5 ~~~vlItGasg-~iG~~l~~~l~~~G~~V~~~~r~~~~-~-------~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~ 74 (251)
T PRK07231 5 GKVAIVTGASS-GIGEGIARRFAAEGARVVVTDRNEEA-A-------ERVAAEILA-GGRAIAVAADVSDEADVEAAVAA 74 (251)
T ss_pred CcEEEEECCCC-hHHHHHHHHHHHCCCEEEEEeCCHHH-H-------HHHHHHHhc-CCeEEEEECCCCCHHHHHHHHHH
Confidence 46889998643 2333444333 125678888877421 1 122233433 33 33567788876644221
Q ss_pred ---cCCcccEEEEcCC
Q 044601 90 ---RTHKFDRVIYNFP 102 (213)
Q Consensus 90 ---~~~~FDrIiFNFP 102 (213)
+...+|.||.|-.
T Consensus 75 ~~~~~~~~d~vi~~ag 90 (251)
T PRK07231 75 ALERFGSVDILVNNAG 90 (251)
T ss_pred HHHHhCCCCEEEECCC
Confidence 1246899998864
No 389
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=22.68 E-value=3.5e+02 Score=24.23 Aligned_cols=38 Identities=16% Similarity=0.182 Sum_probs=26.5
Q ss_pred cCCCCCCeEEEEecCChh-HHHHHHHHhCCCCeEEEeccC
Q 044601 10 NHYSSKQRILLVGEGDFS-FSLCLAREFGFAHNMVATCLD 48 (213)
Q Consensus 10 ~~y~~~~~ILlVGEGnFS-FS~aLa~~~~~~~~l~ATs~d 48 (213)
.+..++++||+.|-|-.. ++..||++.| ..+|++|...
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G-~~~Vi~~~~~ 219 (368)
T TIGR02818 181 AKVEEGDTVAVFGLGGIGLSVIQGARMAK-ASRIIAIDIN 219 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCC
Confidence 355678999999988665 3455677775 3478887543
No 390
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=22.67 E-value=2.5e+02 Score=26.22 Aligned_cols=67 Identities=18% Similarity=0.245 Sum_probs=48.1
Q ss_pred EEEeccCCHHHHHhhcc----------hHHHHHHHHHhCCCE--EEEeeeccccCCCcc----ccCCcccEEEEcCCcCC
Q 044601 42 MVATCLDTQETIANKYS----------NAVDNVRELEERGCL--VFYGVDAMQMSQHFF----LRTHKFDRVIYNFPHVG 105 (213)
Q Consensus 42 l~ATs~ds~~~l~~kY~----------~a~~ni~~L~~~g~~--V~~gVDAt~L~~~~~----l~~~~FDrIiFNFPH~G 105 (213)
.|--|+|..+++-.+|- ....||+.|++.++. |+.-|+-..++.-.. +.......|.| .|.++
T Consensus 116 ~IgISiDGp~eihD~~R~~~~GkgTfd~i~~~i~~L~~~~v~~~~~~vv~~~n~~~~~ei~~~l~~~g~~~i~f-ip~~~ 194 (378)
T COG0641 116 LIGISIDGPEEIHDKYRVTKSGKGTFDRVMKGLELLQAHGVDFNTLTVVNRQNVLHPEEIYHFLKSEGSKFIQF-IPLVE 194 (378)
T ss_pred eEEEeccCchHhccccccCCCCCccHHHHHHHHHHHHHcCCcEEEEEEEchhHhhCHHHHHHHHHHcccceEEE-Eeccc
Confidence 78889999999998887 246799999998753 566677777664322 11222788999 89999
Q ss_pred Cccc
Q 044601 106 FIFR 109 (213)
Q Consensus 106 ~~~~ 109 (213)
....
T Consensus 195 ~~~~ 198 (378)
T COG0641 195 SDNR 198 (378)
T ss_pred CCCC
Confidence 7543
No 391
>PRK07774 short chain dehydrogenase; Provisional
Probab=22.59 E-value=3.3e+02 Score=22.26 Aligned_cols=80 Identities=10% Similarity=0.115 Sum_probs=43.0
Q ss_pred CCeEEEEecCChhHHHHHHHHh-CCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCC-EEEEeeeccccCCCccc---
Q 044601 15 KQRILLVGEGDFSFSLCLAREF-GFAHNMVATCLDTQETIANKYSNAVDNVRELEERGC-LVFYGVDAMQMSQHFFL--- 89 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~V~~gVDAt~L~~~~~l--- 89 (213)
+++||+.|=.. .-..++++++ ..+.+|+.+..+.. .+ ....+.+++.+. ...+.+|.++..+...+
T Consensus 6 ~k~vlItGasg-~iG~~la~~l~~~g~~vi~~~r~~~-~~-------~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 76 (250)
T PRK07774 6 DKVAIVTGAAG-GIGQAYAEALAREGASVVVADINAE-GA-------ERVAKQIVADGGTAIAVQVDVSDPDSAKAMADA 76 (250)
T ss_pred CCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHH-HH-------HHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 46899999633 2234444433 12567888876532 11 112344444443 34678898877642211
Q ss_pred ---cCCcccEEEEcCCc
Q 044601 90 ---RTHKFDRVIYNFPH 103 (213)
Q Consensus 90 ---~~~~FDrIiFNFPH 103 (213)
.....|.||.|=.-
T Consensus 77 ~~~~~~~id~vi~~ag~ 93 (250)
T PRK07774 77 TVSAFGGIDYLVNNAAI 93 (250)
T ss_pred HHHHhCCCCEEEECCCC
Confidence 11358988876544
No 392
>PRK06163 hypothetical protein; Provisional
Probab=22.58 E-value=56 Score=27.67 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=22.8
Q ss_pred CCCeEEEEecCChhHHHH-HHHHhC-CCCeEEEeccCC
Q 044601 14 SKQRILLVGEGDFSFSLC-LAREFG-FAHNMVATCLDT 49 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~a-La~~~~-~~~~l~ATs~ds 49 (213)
....|+++|||.|.++.. |+..-. ...+++.-.++.
T Consensus 75 ~r~Vv~i~GDG~f~m~~~eL~Ta~~~~~lpi~ivV~NN 112 (202)
T PRK06163 75 KRRVIALEGDGSLLMQLGALGTIAALAPKNLTIIVMDN 112 (202)
T ss_pred CCeEEEEEcchHHHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 346799999999988743 332211 134677777775
No 393
>COG3439 Uncharacterized conserved protein [Function unknown]
Probab=22.47 E-value=2.6e+02 Score=22.52 Aligned_cols=94 Identities=19% Similarity=0.266 Sum_probs=62.4
Q ss_pred CeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCcc-ccCCcccEEEEcCCcCCCcccccchHHHHh
Q 044601 40 HNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFF-LRTHKFDRVIYNFPHVGFIFRENSYCQIQL 118 (213)
Q Consensus 40 ~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~-l~~~~FDrIiFNFPH~G~~~~e~~~~~i~~ 118 (213)
..++++|-=+.+|..++ -..+|++.|-.|+-.||..+.-+... +.-.+.-.|+|=+|-.|.. -+..
T Consensus 11 ~~~~~~s~~~~~E~i~~------l~~~lk~~G~~V~~~id~~e~l~~~g~~~~~p~~Il~~cnP~~g~~-------ll~~ 77 (137)
T COG3439 11 MLVTAESKLSFDETIER------LEEKLKKNGFKVFTEIDHAEALKNAGVLDIPPYTILVFCNPKAGTP-------LLSK 77 (137)
T ss_pred eeEEEEecCCHHHHHHH------HHHHHHhCCCeEEEEecHHHHHHhcCcCCCCCeEEEEEcCCcccch-------hhcc
Confidence 45677777777666553 35778999999999999887665543 4456677788888888852 2334
Q ss_pred hHHHHHHHHHHHHhhccc-CCCeEEEEeccC
Q 044601 119 NKELVKGFLRNAKLLLKE-ENGEIHVTHKEG 148 (213)
Q Consensus 119 n~~Ll~~Ff~Sa~~~L~~-~~G~ihvTl~~~ 148 (213)
++.+ +.+--|+-++-. .+|.+.++...-
T Consensus 78 ~p~~--gl~lPcrv~V~e~~~~~v~~~~~~~ 106 (137)
T COG3439 78 NPEF--GLLLPCRVLVYEDEDGKVRVSYIPI 106 (137)
T ss_pred Chhh--hccCCeEEEEEEcCCCeEEEEEech
Confidence 4422 344556665553 678888887643
No 394
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=22.46 E-value=2.2e+02 Score=26.36 Aligned_cols=83 Identities=16% Similarity=0.208 Sum_probs=47.9
Q ss_pred CeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCCccc
Q 044601 16 QRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTHKFD 95 (213)
Q Consensus 16 ~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~~FD 95 (213)
++|-++|=|+|-.|+|..-+-. +.+++--..|.+ . .+.-.+...|-++|. |+..--++-||.=-.. --...|
T Consensus 2 ~kI~ViGaGswGTALA~~la~n-g~~V~lw~r~~~-~-~~~i~~~~~N~~yLp--~i~lp~~l~at~Dl~~---a~~~ad 73 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARN-GHEVRLWGRDEE-I-VAEINETRENPKYLP--GILLPPNLKATTDLAE---ALDGAD 73 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhc-CCeeEEEecCHH-H-HHHHHhcCcCccccC--CccCCcccccccCHHH---HHhcCC
Confidence 6899999999888877754432 466766666632 2 221111234555665 4433333333331111 123489
Q ss_pred EEEEcCCcCCC
Q 044601 96 RVIYNFPHVGF 106 (213)
Q Consensus 96 rIiFNFPH~G~ 106 (213)
.|+|.=|+-+.
T Consensus 74 ~iv~avPs~~~ 84 (329)
T COG0240 74 IIVIAVPSQAL 84 (329)
T ss_pred EEEEECChHHH
Confidence 99999999884
No 395
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=22.39 E-value=4.5e+02 Score=21.71 Aligned_cols=77 Identities=13% Similarity=0.062 Sum_probs=44.3
Q ss_pred CCeEEEEecCChhHHHHHHHHh-CCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEE-EEeeeccccCCCccc---
Q 044601 15 KQRILLVGEGDFSFSLCLAREF-GFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLV-FYGVDAMQMSQHFFL--- 89 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V-~~gVDAt~L~~~~~l--- 89 (213)
++++|+.|=+. -.-.++++.+ ..+.+|++++.+.. .....+.|+..|..+ .+.+|.++......+
T Consensus 8 ~k~vlVtGas~-gIG~~la~~l~~~G~~v~~~~r~~~---------~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 77 (260)
T PRK12823 8 GKVVVVTGAAQ-GIGRGVALRAAAEGARVVLVDRSEL---------VHEVAAELRAAGGEALALTADLETYAGAQAAMAA 77 (260)
T ss_pred CCEEEEeCCCc-hHHHHHHHHHHHCCCEEEEEeCchH---------HHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHH
Confidence 57889988544 3344444443 23567888776521 122345566666654 567888875432211
Q ss_pred ---cCCcccEEEEcC
Q 044601 90 ---RTHKFDRVIYNF 101 (213)
Q Consensus 90 ---~~~~FDrIiFNF 101 (213)
.....|.||.|=
T Consensus 78 ~~~~~~~id~lv~nA 92 (260)
T PRK12823 78 AVEAFGRIDVLINNV 92 (260)
T ss_pred HHHHcCCCeEEEECC
Confidence 124689988874
No 396
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=22.32 E-value=3.9e+02 Score=24.12 Aligned_cols=122 Identities=27% Similarity=0.271 Sum_probs=67.1
Q ss_pred CCCCeEEEEecCChhHHHHHHH-HhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccC
Q 044601 13 SSKQRILLVGEGDFSFSLCLAR-EFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRT 91 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~aLa~-~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~ 91 (213)
.++++||=||=| |=-+|++. ++| +..++|.=.|.... . .+.+|+ +|.....++... ..... -.
T Consensus 160 ~~g~~vLDvG~G--SGILaiaA~klG-A~~v~a~DiDp~Av-~----~a~~N~-~~N~~~~~~~v~----~~~~~---~~ 223 (295)
T PF06325_consen 160 KPGKRVLDVGCG--SGILAIAAAKLG-AKKVVAIDIDPLAV-E----AARENA-ELNGVEDRIEVS----LSEDL---VE 223 (295)
T ss_dssp STTSEEEEES-T--TSHHHHHHHHTT-BSEEEEEESSCHHH-H----HHHHHH-HHTT-TTCEEES----CTSCT---CC
T ss_pred cCCCEEEEeCCc--HHHHHHHHHHcC-CCeEEEecCCHHHH-H----HHHHHH-HHcCCCeeEEEE----Eeccc---cc
Confidence 346899999999 66777744 445 66899999986532 1 234442 222222233211 11111 13
Q ss_pred CcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccCCCCCcccHHhHHHHhCcEEEEEe
Q 044601 92 HKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEGDPYNKWELVKKAEKIGLTLQEVV 171 (213)
Q Consensus 92 ~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~~py~~W~i~~lA~~~gl~l~~~~ 171 (213)
.+||.|+-| .....|.........+|+ ++|.+.++ |=.....+-..-|-+.||.+.+..
T Consensus 224 ~~~dlvvAN-----------------I~~~vL~~l~~~~~~~l~-~~G~lIlS---GIl~~~~~~v~~a~~~g~~~~~~~ 282 (295)
T PF06325_consen 224 GKFDLVVAN-----------------ILADVLLELAPDIASLLK-PGGYLILS---GILEEQEDEVIEAYKQGFELVEER 282 (295)
T ss_dssp S-EEEEEEE-----------------S-HHHHHHHHHHCHHHEE-EEEEEEEE---EEEGGGHHHHHHHHHTTEEEEEEE
T ss_pred ccCCEEEEC-----------------CCHHHHHHHHHHHHHhhC-CCCEEEEc---cccHHHHHHHHHHHHCCCEEEEEE
Confidence 889999976 223444556666678887 88988775 222223333333333499887764
No 397
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=22.28 E-value=84 Score=28.23 Aligned_cols=29 Identities=7% Similarity=0.292 Sum_probs=25.8
Q ss_pred hhcchHHHHHHHHHhCCCEEEEeeecccc
Q 044601 55 NKYSNAVDNVRELEERGCLVFYGVDAMQM 83 (213)
Q Consensus 55 ~kY~~a~~ni~~L~~~g~~V~~gVDAt~L 83 (213)
++||+...-+++|+++|++|+.-||..-.
T Consensus 67 ~~FPdp~~mi~~L~~~G~k~~~~v~P~v~ 95 (317)
T cd06598 67 KAFPDPAGMIADLAKKGVKTIVITEPFVL 95 (317)
T ss_pred ccCCCHHHHHHHHHHcCCcEEEEEcCccc
Confidence 68999999999999999999999986643
No 398
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=22.26 E-value=1.4e+02 Score=22.34 Aligned_cols=47 Identities=28% Similarity=0.270 Sum_probs=30.8
Q ss_pred cccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEE
Q 044601 93 KFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIH 142 (213)
Q Consensus 93 ~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ih 142 (213)
+||.||=|=|-..................|-.-|++-|.++| +|.+-
T Consensus 2 kFD~VIGNPPY~~~~~~~~~~~~~~~~~dlY~~Fie~~~~ll---~G~~~ 48 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIKSLSKKKKKKKKKSDLYILFIEKSLNLL---NGYLS 48 (106)
T ss_pred CcCEEEECCCChhhccccchhhcccccCcHHHHHHHHHHHHh---CCeEE
Confidence 699999999988754222111111225567777888888877 78763
No 399
>PRK08638 threonine dehydratase; Validated
Probab=22.13 E-value=2.9e+02 Score=25.02 Aligned_cols=50 Identities=14% Similarity=0.166 Sum_probs=35.1
Q ss_pred CeEEEEecCChhHHHHH-HHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEE
Q 044601 16 QRILLVGEGDFSFSLCL-AREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFY 76 (213)
Q Consensus 16 ~~ILlVGEGnFSFS~aL-a~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~ 76 (213)
..|...+-||+.-|+|+ ++.+|-...|+.-.-.+ ..+++.++.+|++|..
T Consensus 76 ~~vv~~SsGN~g~alA~~aa~~G~~~~iv~p~~~~-----------~~k~~~~~~~GA~V~~ 126 (333)
T PRK08638 76 KGVVACSAGNHAQGVALSCALLGIDGKVVMPKGAP-----------KSKVAATCGYGAEVVL 126 (333)
T ss_pred CeEEEeCCcHHHHHHHHHHHHcCCCEEEEeCCCCc-----------HHHHHHHHHcCCEEEE
Confidence 57999999999999999 45566554444432222 2357888999998864
No 400
>PF03742 PetN: PetN ; InterPro: IPR005497 PetN is a small hydrophobic protein, crucial for cytochrome b6-f complex assembly and/or stability. It is found in bacteria and plants. Cytochrome b6-f complex is composed of 4 large subunits: cytochrome b6, subunit IV (17 kDa polypeptide, petD), cytochrome f and the Rieske protein, as well as 4 small subunits: petG, petL, petM and petN. The complex functions as a dimer. The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI) [].; GO: 0045158 electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity, 0017004 cytochrome complex assembly, 0009512 cytochrome b6f complex; PDB: 2ZT9_H 2D2C_H 2E76_H 1VF5_U 2E75_H 2E74_H.
Probab=22.01 E-value=56 Score=19.65 Aligned_cols=9 Identities=56% Similarity=0.899 Sum_probs=7.2
Q ss_pred hhHHHHHHH
Q 044601 26 FSFSLCLAR 34 (213)
Q Consensus 26 FSFS~aLa~ 34 (213)
|+||+||..
T Consensus 15 ftfSlalVV 23 (29)
T PF03742_consen 15 FTFSLALVV 23 (29)
T ss_dssp HHHHHHHHH
T ss_pred HhccceeEE
Confidence 889999864
No 401
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=21.98 E-value=4.1e+02 Score=21.59 Aligned_cols=79 Identities=13% Similarity=0.106 Sum_probs=43.9
Q ss_pred CCCeEEEEec-CChhHHHHHHHHh-CCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCE-EEEeeeccccCCCccc-
Q 044601 14 SKQRILLVGE-GDFSFSLCLAREF-GFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCL-VFYGVDAMQMSQHFFL- 89 (213)
Q Consensus 14 ~~~~ILlVGE-GnFSFS~aLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~-V~~gVDAt~L~~~~~l- 89 (213)
+++++|++|= |..-.+.+. .+ ..+.+|+.++.+. +.+ ....++++..|.+ ..+.+|.++......+
T Consensus 4 ~~~~~lItG~~g~iG~~~a~--~l~~~G~~vi~~~r~~-~~~-------~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 73 (253)
T PRK08217 4 KDKVIVITGGAQGLGRAMAE--YLAQKGAKLALIDLNQ-EKL-------EEAVAECGALGTEVRGYAANVTDEEDVEATF 73 (253)
T ss_pred CCCEEEEECCCchHHHHHHH--HHHHCCCEEEEEeCCH-HHH-------HHHHHHHHhcCCceEEEEcCCCCHHHHHHHH
Confidence 4678999984 555444443 22 1245777776653 222 2234445555654 4678888775432111
Q ss_pred -----cCCcccEEEEcCC
Q 044601 90 -----RTHKFDRVIYNFP 102 (213)
Q Consensus 90 -----~~~~FDrIiFNFP 102 (213)
....+|.||.|-.
T Consensus 74 ~~~~~~~~~id~vi~~ag 91 (253)
T PRK08217 74 AQIAEDFGQLNGLINNAG 91 (253)
T ss_pred HHHHHHcCCCCEEEECCC
Confidence 1246899988853
No 402
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=21.97 E-value=4.5e+02 Score=21.55 Aligned_cols=87 Identities=20% Similarity=0.211 Sum_probs=45.5
Q ss_pred CCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHH--hhc-c-----------h-HHHHHHHHHhCCCEEE---
Q 044601 14 SKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIA--NKY-S-----------N-AVDNVRELEERGCLVF--- 75 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~--~kY-~-----------~-a~~ni~~L~~~g~~V~--- 75 (213)
...++..||+. +...++.+|-...+++....+++.+. .++ . . ...-.+.|++.|+.|.
T Consensus 80 ~~~~~~avG~~----Ta~~l~~~G~~~~~~~~~~~~~~l~~~l~~~~~~~~~ili~~~~~~~~~l~~~L~~~G~~v~~~~ 155 (249)
T PRK05928 80 KNKKYAAIGEK----TALALKKLGGKVVFVPEDGESSELLLELPELLLKGKRVLYLRGNGGREVLGDTLEERGAEVDECE 155 (249)
T ss_pred CCCEEEEECHH----HHHHHHHcCCCccccCCCCcChHHHHhChhhhcCCCEEEEECCCCCHHHHHHHHHHCCCEEeEEE
Confidence 46789999987 55555666644444555554433221 122 1 1 2345688999997653
Q ss_pred -EeeeccccCCCcc---ccCCcccEEEEcCCcC
Q 044601 76 -YGVDAMQMSQHFF---LRTHKFDRVIYNFPHV 104 (213)
Q Consensus 76 -~gVDAt~L~~~~~---l~~~~FDrIiFNFPH~ 104 (213)
|.+.......... +....+|.|+|-=|..
T Consensus 156 ~Y~~~~~~~~~~~~~~~~~~~~~d~ivftS~~~ 188 (249)
T PRK05928 156 VYERVPPKLDGAELLARLQSGEVDAVIFTSPST 188 (249)
T ss_pred EEEeeCCCCChHHHHHHHHhCCCCEEEECCHHH
Confidence 3332221111000 1125789999965543
No 403
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=21.84 E-value=4.8e+02 Score=21.87 Aligned_cols=80 Identities=20% Similarity=0.215 Sum_probs=42.9
Q ss_pred CCCeEEEEecC-ChhHHHHHHHHh-CCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccc--
Q 044601 14 SKQRILLVGEG-DFSFSLCLAREF-GFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFL-- 89 (213)
Q Consensus 14 ~~~~ILlVGEG-nFSFS~aLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l-- 89 (213)
+++.+|+.|=| .=..-+++|+.+ ..+.+|+.+..+..++..++ ..+.+.. . ...+.+|+++..+...+
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~------~~~~~~~-~-~~~~~~Dv~~~~~i~~~~~ 77 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTER------IAKRLPE-P-APVLELDVTNEEHLASLAD 77 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHH------HHHhcCC-C-CcEEeCCCCCHHHHHHHHH
Confidence 35789999952 223444444433 13568888876532222221 1122221 1 23577898887654321
Q ss_pred ----cCCcccEEEEcC
Q 044601 90 ----RTHKFDRVIYNF 101 (213)
Q Consensus 90 ----~~~~FDrIiFNF 101 (213)
...+.|.+|.|=
T Consensus 78 ~~~~~~g~iD~li~nA 93 (256)
T PRK07889 78 RVREHVDGLDGVVHSI 93 (256)
T ss_pred HHHHHcCCCcEEEEcc
Confidence 135799988874
No 404
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=21.78 E-value=94 Score=28.15 Aligned_cols=28 Identities=18% Similarity=0.221 Sum_probs=24.9
Q ss_pred hhcchHHHHHHHHHhCCCEEEEeeeccc
Q 044601 55 NKYSNAVDNVRELEERGCLVFYGVDAMQ 82 (213)
Q Consensus 55 ~kY~~a~~ni~~L~~~g~~V~~gVDAt~ 82 (213)
++||+...-+++|++.|++|+.-||..-
T Consensus 61 ~~FPdp~~mi~~L~~~G~k~~~~~~P~v 88 (339)
T cd06603 61 KKFPDPEKMQEKLASKGRKLVTIVDPHI 88 (339)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEecCce
Confidence 6899999999999999999999888554
No 405
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=21.76 E-value=1.1e+02 Score=22.77 Aligned_cols=30 Identities=27% Similarity=0.331 Sum_probs=23.1
Q ss_pred hhcchHHHHHHHHHhCCCEEEEeeeccccC
Q 044601 55 NKYSNAVDNVRELEERGCLVFYGVDAMQMS 84 (213)
Q Consensus 55 ~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~ 84 (213)
+-+|.+.+-|+.|++.|..+++=-|.+.-.
T Consensus 14 ~~ipga~e~l~~L~~~g~~~~~lTNns~~s 43 (101)
T PF13344_consen 14 EPIPGAVEALDALRERGKPVVFLTNNSSRS 43 (101)
T ss_dssp EE-TTHHHHHHHHHHTTSEEEEEES-SSS-
T ss_pred CcCcCHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 357899999999999999999877776544
No 406
>PRK08226 short chain dehydrogenase; Provisional
Probab=21.70 E-value=4e+02 Score=22.05 Aligned_cols=78 Identities=17% Similarity=0.162 Sum_probs=41.8
Q ss_pred CCCeEEEEecCChhHHHHHHHHh-CCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEE-EEeeeccccCCCccc--
Q 044601 14 SKQRILLVGEGDFSFSLCLAREF-GFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLV-FYGVDAMQMSQHFFL-- 89 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V-~~gVDAt~L~~~~~l-- 89 (213)
+.+++|+.|=.. .-..++++.+ ..+..|+.++.... ....++.+++.|..+ .+.+|.++......+
T Consensus 5 ~~~~~lItG~s~-giG~~la~~l~~~G~~Vv~~~r~~~---------~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~ 74 (263)
T PRK08226 5 TGKTALITGALQ-GIGEGIARVFARHGANLILLDISPE---------IEKLADELCGRGHRCTAVVADVRDPASVAAAIK 74 (263)
T ss_pred CCCEEEEeCCCC-hHHHHHHHHHHHCCCEEEEecCCHH---------HHHHHHHHHHhCCceEEEECCCCCHHHHHHHHH
Confidence 357788887543 2233333332 13567888876521 122344455555544 567888886543221
Q ss_pred ----cCCcccEEEEcC
Q 044601 90 ----RTHKFDRVIYNF 101 (213)
Q Consensus 90 ----~~~~FDrIiFNF 101 (213)
.....|.||.|-
T Consensus 75 ~~~~~~~~id~vi~~a 90 (263)
T PRK08226 75 RAKEKEGRIDILVNNA 90 (263)
T ss_pred HHHHHcCCCCEEEECC
Confidence 124578888764
No 407
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=21.64 E-value=98 Score=27.90 Aligned_cols=30 Identities=20% Similarity=0.348 Sum_probs=26.1
Q ss_pred hhcchHHHHHHHHHhCCCEEEEeeeccccC
Q 044601 55 NKYSNAVDNVRELEERGCLVFYGVDAMQMS 84 (213)
Q Consensus 55 ~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~ 84 (213)
++||+..+-|++|++.|++|+.-||..-..
T Consensus 68 ~~FPdp~~mi~~Lh~~G~~~~~~i~P~v~~ 97 (317)
T cd06594 68 ERYPGLDELIEELKARGIRVLTYINPYLAD 97 (317)
T ss_pred hhCCCHHHHHHHHHHCCCEEEEEecCceec
Confidence 589999999999999999999988876443
No 408
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=21.60 E-value=2.5e+02 Score=28.33 Aligned_cols=67 Identities=13% Similarity=0.260 Sum_probs=40.7
Q ss_pred CCCCeEEEEecCChhHHHHH-HHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccC
Q 044601 13 SSKQRILLVGEGDFSFSLCL-AREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMS 84 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~aL-a~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~ 84 (213)
..+++|++||-||-..-.|. +..++.. .|+--...+..+ .|....-++.+++.|+.++++..++.+.
T Consensus 568 ~~gk~VvVIGgG~~a~d~A~~~~r~Ga~-~Vtlv~r~~~~~----~~~~~~e~~~~~~~GV~i~~~~~~~~i~ 635 (752)
T PRK12778 568 KFGKKVAVVGGGNTAMDSARTAKRLGAE-RVTIVYRRSEEE----MPARLEEVKHAKEEGIEFLTLHNPIEYL 635 (752)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCC-eEEEeeecCccc----CCCCHHHHHHHHHcCCEEEecCcceEEE
Confidence 34689999999997766655 3444422 243333222221 1222233567888999999888777764
No 409
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=21.55 E-value=3.5e+02 Score=25.27 Aligned_cols=37 Identities=11% Similarity=0.329 Sum_probs=24.2
Q ss_pred CCCCCeEEEEecCChhHHHHH--HHHhCCCCeEEEeccC
Q 044601 12 YSSKQRILLVGEGDFSFSLCL--AREFGFAHNMVATCLD 48 (213)
Q Consensus 12 y~~~~~ILlVGEGnFSFS~aL--a~~~~~~~~l~ATs~d 48 (213)
|...+|+.++||++...+++- .+.+|-...++.+.-.
T Consensus 290 ~~~~k~vai~~~~~~~~~l~~~L~~elGm~~~~~~~~~~ 328 (427)
T cd01971 290 WGLPRRFAVIADSTYALGLARFLVNELGWVPAKQVITDN 328 (427)
T ss_pred hcCCceEEEECChHHHHHHHHHHHHhcCCceEEEEecCC
Confidence 555799999999987766653 4567644444444444
No 410
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=21.55 E-value=4.5e+02 Score=21.39 Aligned_cols=79 Identities=16% Similarity=0.125 Sum_probs=44.8
Q ss_pred CCeEEEEecCChhHHHHHHHHh-CCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEE-EEeeeccccCCCccc---
Q 044601 15 KQRILLVGEGDFSFSLCLAREF-GFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLV-FYGVDAMQMSQHFFL--- 89 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V-~~gVDAt~L~~~~~l--- 89 (213)
.++||+.|=.. .-..+|++.+ ..+..|++++.+... .....++++..+..+ .+.+|.++......+
T Consensus 7 ~~~vlVtG~sg-~iG~~l~~~L~~~G~~Vi~~~r~~~~--------~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 77 (239)
T PRK07666 7 GKNALITGAGR-GIGRAVAIALAKEGVNVGLLARTEEN--------LKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQ 77 (239)
T ss_pred CCEEEEEcCCc-hHHHHHHHHHHHCCCEEEEEeCCHHH--------HHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHH
Confidence 46789998332 3444444443 235689998877532 122344555556544 577888876532111
Q ss_pred ---cCCcccEEEEcCC
Q 044601 90 ---RTHKFDRVIYNFP 102 (213)
Q Consensus 90 ---~~~~FDrIiFNFP 102 (213)
+....|.||.|-.
T Consensus 78 ~~~~~~~id~vi~~ag 93 (239)
T PRK07666 78 LKNELGSIDILINNAG 93 (239)
T ss_pred HHHHcCCccEEEEcCc
Confidence 1246788887753
No 411
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=21.39 E-value=3.6e+02 Score=23.63 Aligned_cols=55 Identities=15% Similarity=0.215 Sum_probs=36.9
Q ss_pred CCCeEEEEecCChhHHHHH-HHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeec
Q 044601 14 SKQRILLVGEGDFSFSLCL-AREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDA 80 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aL-a~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDA 80 (213)
+.+.|..-.-||..-|+|. |+.+|-...|+.-.--+ ..+++.++..|++|.. ++.
T Consensus 57 ~g~~vv~aSsGN~g~alA~~a~~~G~~~~i~vp~~~~-----------~~k~~~~~~~GA~v~~-~~~ 112 (299)
T TIGR01136 57 PGDTIIEATSGNTGIALAMVAAAKGYKLILTMPETMS-----------LERRKLLRAYGAELIL-TPA 112 (299)
T ss_pred CCCEEEEeCCChHHHHHHHHHHHcCCcEEEEECCCCC-----------HHHHHHHHHcCCEEEE-eCC
Confidence 3467889999999999999 45665443333221111 2568889999998875 443
No 412
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=21.36 E-value=3.4e+02 Score=24.04 Aligned_cols=79 Identities=14% Similarity=0.048 Sum_probs=40.0
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCC
Q 044601 13 SSKQRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTH 92 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~ 92 (213)
+++++||+.|=..|==+.........+..|+++..+... ....+..+...+-..++..|.++......+- .
T Consensus 8 ~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~--------~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-~ 78 (353)
T PLN02896 8 SATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAK--------SLHLLSKWKEGDRLRLFRADLQEEGSFDEAV-K 78 (353)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHH--------HHHHHHhhccCCeEEEEECCCCCHHHHHHHH-c
Confidence 567899999976654333322222346788888654321 1122333332111224567777654322111 2
Q ss_pred cccEEEEc
Q 044601 93 KFDRVIYN 100 (213)
Q Consensus 93 ~FDrIiFN 100 (213)
.+|.||..
T Consensus 79 ~~d~Vih~ 86 (353)
T PLN02896 79 GCDGVFHV 86 (353)
T ss_pred CCCEEEEC
Confidence 36876654
No 413
>PRK05939 hypothetical protein; Provisional
Probab=21.36 E-value=2.5e+02 Score=26.04 Aligned_cols=82 Identities=12% Similarity=0.020 Sum_probs=43.8
Q ss_pred CeEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeeccccCCCccccCCccc
Q 044601 16 QRILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQMSQHFFLRTHKFD 95 (213)
Q Consensus 16 ~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L~~~~~l~~~~FD 95 (213)
..-+++.-|--..+.+|.-.++++.+|+++.. -|+.....+..|+..|+.|.+ ||..++..-...-..+-.
T Consensus 63 ~~~v~~ssG~~Ai~~~l~all~~Gd~Vv~~~~--------~y~~t~~~~~~l~~~G~~v~~-v~~~d~e~l~~~l~~~tk 133 (397)
T PRK05939 63 VGTVCFATGMAAIAAVFLTLLRAGDHLVSSQF--------LFGNTNSLFGTLRGLGVEVTM-VDATDVQNVAAAIRPNTR 133 (397)
T ss_pred CeEEEeCCHHHHHHHHHHHHcCCCCEEEECCC--------ccccHHHHHHHHHhcCCEEEE-ECCCCHHHHHHhCCCCCe
Confidence 34566666744344444333445567777643 255444445667888987643 344332221111123356
Q ss_pred EEEEcCCcCCC
Q 044601 96 RVIYNFPHVGF 106 (213)
Q Consensus 96 rIiFNFPH~G~ 106 (213)
.|+.+.|+-..
T Consensus 134 lV~vesp~Npt 144 (397)
T PRK05939 134 MVFVETIANPG 144 (397)
T ss_pred EEEEECCCCCC
Confidence 78899888664
No 414
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=21.29 E-value=1e+02 Score=25.47 Aligned_cols=28 Identities=14% Similarity=0.159 Sum_probs=11.2
Q ss_pred EecCChhHHHHHHHHhCCCCeEEEeccC
Q 044601 21 VGEGDFSFSLCLAREFGFAHNMVATCLD 48 (213)
Q Consensus 21 VGEGnFSFS~aLa~~~~~~~~l~ATs~d 48 (213)
.|=..++.+.|+.-++.....+++-+=|
T Consensus 41 ~gsmG~~lpaAiGa~la~~~~Vv~i~GD 68 (181)
T TIGR03846 41 LGSMGLASSIGLGLALATDRTVIVIDGD 68 (181)
T ss_pred ccccccHHHHHHHHHHcCCCcEEEEEcc
Confidence 4444444444443322223344444444
No 415
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=21.26 E-value=4.9e+02 Score=21.78 Aligned_cols=35 Identities=23% Similarity=0.478 Sum_probs=23.9
Q ss_pred cCCCCCCeEEEEec-CChhHHH-HHHHHhCCCCeEEEec
Q 044601 10 NHYSSKQRILLVGE-GDFSFSL-CLAREFGFAHNMVATC 46 (213)
Q Consensus 10 ~~y~~~~~ILlVGE-GnFSFS~-aLa~~~~~~~~l~ATs 46 (213)
....++.+||++|- |...-+. .+|+..+ ..+++++
T Consensus 139 ~~~~~g~~vli~g~~g~~g~~~~~la~~~g--~~v~~~~ 175 (319)
T cd08267 139 GKVKPGQRVLINGASGGVGTFAVQIAKALG--AHVTGVC 175 (319)
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHcC--CEEEEEe
Confidence 34667899999995 6665554 3466665 4777776
No 416
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=21.26 E-value=1.8e+02 Score=27.67 Aligned_cols=38 Identities=13% Similarity=0.102 Sum_probs=23.6
Q ss_pred CCCCCeEEEEecCChhHHHH-HH-HHhCCCCeEEEeccCC
Q 044601 12 YSSKQRILLVGEGDFSFSLC-LA-REFGFAHNMVATCLDT 49 (213)
Q Consensus 12 y~~~~~ILlVGEGnFSFS~a-La-~~~~~~~~l~ATs~ds 49 (213)
+-.++|+.+.||++..++++ ++ +.+|-.+..++|.+..
T Consensus 322 ~L~GkrvaI~~~~~~~~~l~~~l~~ElGmevv~~~~~~~~ 361 (457)
T TIGR01284 322 RLRGKKVWVWSGGPKLWHWPRPLEDELGMEVVAVSTKFGH 361 (457)
T ss_pred HcCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEEEEeCC
Confidence 34589999999998876665 33 3566333334444433
No 417
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=21.25 E-value=1.5e+02 Score=26.45 Aligned_cols=44 Identities=11% Similarity=0.119 Sum_probs=33.2
Q ss_pred HHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeee
Q 044601 28 FSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVD 79 (213)
Q Consensus 28 FS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVD 79 (213)
|+.|+-+|+..+.+|+||- +..+. ..+|++.++++|+.|.=...
T Consensus 6 ~~~Av~~Hl~aG~~V~at~----~AA~T----i~Ddl~~V~~~GI~I~~~~p 49 (254)
T PF08735_consen 6 FTRAVKEHLKAGLRVYATP----DAALT----IHDDLERVRAMGIEITEEPP 49 (254)
T ss_pred HHHHHHHHHHCCCcEEEcH----HHHhh----hccCHHHHHhCCeEEEeccC
Confidence 6788888888789999983 22222 35689999999999987773
No 418
>PRK08329 threonine synthase; Validated
Probab=21.20 E-value=3.2e+02 Score=24.78 Aligned_cols=50 Identities=14% Similarity=0.316 Sum_probs=35.2
Q ss_pred CeEEEEecCChhHHHHHH-HHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEE
Q 044601 16 QRILLVGEGDFSFSLCLA-REFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFY 76 (213)
Q Consensus 16 ~~ILlVGEGnFSFS~aLa-~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~ 76 (213)
+.|....-||..-|+|.+ ...|-...|+... +. ...++..++..|++|+.
T Consensus 105 ~~vv~aSsGN~g~alA~~aa~~G~~~~v~vp~-~~----------~~~k~~~~~~~GA~v~~ 155 (347)
T PRK08329 105 NEVVIDSSGNAALSLALYSLSEGIKVHVFVSY-NA----------SKEKISLLSRLGAELHF 155 (347)
T ss_pred CEEEEECCCcHHHHHHHHHHHcCCcEEEEECC-CC----------hHHHHHHHHHcCCEEEE
Confidence 689999999999999995 4555454444322 11 24678899999998763
No 419
>PF07368 DUF1487: Protein of unknown function (DUF1487); InterPro: IPR009961 This family consists of several uncharacterised proteins from Drosophila melanogaster. The function of this family is unknown.
Probab=21.09 E-value=5.6e+02 Score=22.32 Aligned_cols=85 Identities=18% Similarity=0.264 Sum_probs=56.0
Q ss_pred CCeEEEEecCChhHHH-HHHHHhC--CCCeEEEeccCCH---HH--------------HHhhcchHHHHHHHHHhCCCEE
Q 044601 15 KQRILLVGEGDFSFSL-CLAREFG--FAHNMVATCLDTQ---ET--------------IANKYSNAVDNVRELEERGCLV 74 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~-aLa~~~~--~~~~l~ATs~ds~---~~--------------l~~kY~~a~~ni~~L~~~g~~V 74 (213)
.+=+.+.-|||..=|. .|++.+. -+.+.|||.+--| ++ -.+.+|+-...++.|+.+++++
T Consensus 5 P~lMIvfe~GDlnsA~~~L~~sl~~Pf~~~~VatVlVqEsireefi~rvr~~m~pl~~~va~Hpny~rsl~~i~~l~~~~ 84 (215)
T PF07368_consen 5 PQLMIVFEDGDLNSAMHYLLESLHNPFAPGAVATVLVQESIREEFIERVRSRMKPLSPQVANHPNYLRSLKKIKCLNAKT 84 (215)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHhCcccCCcEEEEEEeHHHHHHHHHHHHHhCccCChhhccCcHHHHHHHHHHhcCCeE
Confidence 3445667789997554 4555442 3568999998753 22 2245677788899999999999
Q ss_pred EEeeeccccCCCccccCCcccEEEEcCCcCCC
Q 044601 75 FYGVDAMQMSQHFFLRTHKFDRVIYNFPHVGF 106 (213)
Q Consensus 75 ~~gVDAt~L~~~~~l~~~~FDrIiFNFPH~G~ 106 (213)
+.. ...... ...--.|+.+|||.=+
T Consensus 85 I~~----~~~~~~---~~aSPilV~d~~h~~f 109 (215)
T PF07368_consen 85 IVA----DFENVP---PPASPILVCDFTHSYF 109 (215)
T ss_pred EEe----cccCCC---CCCCCEEEcCCCHHHc
Confidence 988 111111 2234578889999754
No 420
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=21.03 E-value=93 Score=30.18 Aligned_cols=33 Identities=27% Similarity=0.453 Sum_probs=23.1
Q ss_pred CCeEEEEecCChhHHH-HH--HHHhCCCCeEEEeccCC
Q 044601 15 KQRILLVGEGDFSFSL-CL--AREFGFAHNMVATCLDT 49 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~-aL--a~~~~~~~~l~ATs~ds 49 (213)
...|+++|||.|-|+. .| |.+++ ..++--.++.
T Consensus 437 ~~Vv~i~GDG~f~m~~~eL~Ta~~~~--l~i~~vV~NN 472 (566)
T PRK07282 437 KEVILFVGDGGFQMTNQELAILNIYK--VPIKVVMLNN 472 (566)
T ss_pred CcEEEEEcchhhhccHHHHHHHHHhC--CCeEEEEEeC
Confidence 4568999999999996 33 44554 5566666664
No 421
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=21.01 E-value=3.1e+02 Score=23.13 Aligned_cols=81 Identities=17% Similarity=0.206 Sum_probs=44.9
Q ss_pred CCCeEEEEec---CChhHHHHHHHHh-CCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCC-EEEEeeeccccCCCcc
Q 044601 14 SKQRILLVGE---GDFSFSLCLAREF-GFAHNMVATCLDTQETIANKYSNAVDNVRELEERGC-LVFYGVDAMQMSQHFF 88 (213)
Q Consensus 14 ~~~~ILlVGE---GnFSFS~aLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~V~~gVDAt~L~~~~~ 88 (213)
+++.+|+.|= +..-.+.| +.+ ..+.+|+.+..+.+.. ...+.+++|++.+. .+.+.+|.++..+...
T Consensus 5 ~~k~~lItGas~~~GIG~aia--~~la~~G~~v~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~ 76 (258)
T PRK07370 5 TGKKALVTGIANNRSIAWGIA--QQLHAAGAELGITYLPDEKG------RFEKKVRELTEPLNPSLFLPCDVQDDAQIEE 76 (258)
T ss_pred CCcEEEEeCCCCCCchHHHHH--HHHHHCCCEEEEEecCcccc------hHHHHHHHHHhccCcceEeecCcCCHHHHHH
Confidence 4678999995 34544444 332 1356776665543210 12344556654432 3456789888775432
Q ss_pred c------cCCcccEEEEcCC
Q 044601 89 L------RTHKFDRVIYNFP 102 (213)
Q Consensus 89 l------~~~~FDrIiFNFP 102 (213)
+ +..+.|.+|.|=-
T Consensus 77 ~~~~~~~~~g~iD~lv~nag 96 (258)
T PRK07370 77 TFETIKQKWGKLDILVHCLA 96 (258)
T ss_pred HHHHHHHHcCCCCEEEEccc
Confidence 1 1257898888854
No 422
>PRK08339 short chain dehydrogenase; Provisional
Probab=20.97 E-value=5.1e+02 Score=21.82 Aligned_cols=78 Identities=6% Similarity=0.072 Sum_probs=43.1
Q ss_pred CCCeEEEEecCChhHHHHHHHHh-CCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhC-CCE-EEEeeeccccCCCccc-
Q 044601 14 SKQRILLVGEGDFSFSLCLAREF-GFAHNMVATCLDTQETIANKYSNAVDNVRELEER-GCL-VFYGVDAMQMSQHFFL- 89 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~-g~~-V~~gVDAt~L~~~~~l- 89 (213)
+++.+|+.|=+. ..-+++++.+ ..+.+|++++.+.. .+ .+..+.|++. +.. ..+.+|+++......+
T Consensus 7 ~~k~~lItGas~-gIG~aia~~l~~~G~~V~~~~r~~~-~~-------~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~ 77 (263)
T PRK08339 7 SGKLAFTTASSK-GIGFGVARVLARAGADVILLSRNEE-NL-------KKAREKIKSESNVDVSYIVADLTKREDLERTV 77 (263)
T ss_pred CCCEEEEeCCCC-cHHHHHHHHHHHCCCEEEEEeCCHH-HH-------HHHHHHHHhhcCCceEEEEecCCCHHHHHHHH
Confidence 357889998654 2344444433 13568888877632 22 2223344332 443 3578899886543221
Q ss_pred ----cCCcccEEEEc
Q 044601 90 ----RTHKFDRVIYN 100 (213)
Q Consensus 90 ----~~~~FDrIiFN 100 (213)
+....|.+|.|
T Consensus 78 ~~~~~~g~iD~lv~n 92 (263)
T PRK08339 78 KELKNIGEPDIFFFS 92 (263)
T ss_pred HHHHhhCCCcEEEEC
Confidence 12468888876
No 423
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=20.94 E-value=1e+02 Score=27.27 Aligned_cols=27 Identities=15% Similarity=0.329 Sum_probs=24.8
Q ss_pred hhcchHHHHHHHHHhCCCEEEEeeecc
Q 044601 55 NKYSNAVDNVRELEERGCLVFYGVDAM 81 (213)
Q Consensus 55 ~kY~~a~~ni~~L~~~g~~V~~gVDAt 81 (213)
++||+..+-+++|++.|++|+--||..
T Consensus 71 ~~FPdp~~mi~~Lh~~G~k~v~~v~P~ 97 (292)
T cd06595 71 KLFPDPEKLLQDLHDRGLKVTLNLHPA 97 (292)
T ss_pred hcCCCHHHHHHHHHHCCCEEEEEeCCC
Confidence 589999999999999999999988875
No 424
>PRK10717 cysteine synthase A; Provisional
Probab=20.94 E-value=3.7e+02 Score=23.99 Aligned_cols=50 Identities=16% Similarity=0.184 Sum_probs=35.5
Q ss_pred CCeEEEEecCChhHHHHHH-HHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEE
Q 044601 15 KQRILLVGEGDFSFSLCLA-REFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVF 75 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aLa-~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~ 75 (213)
.+.|..-.-||..-|+|++ +.+|-...|+.-.-.+ ..+++.++..|++|.
T Consensus 64 g~~vv~aSsGN~g~alA~~a~~~G~~~~vv~p~~~~-----------~~k~~~~~~~GA~V~ 114 (330)
T PRK10717 64 GGTIVEGTAGNTGIGLALVAAARGYKTVIVMPETQS-----------QEKKDLLRALGAELV 114 (330)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHcCCcEEEEeCCCCC-----------HHHHHHHHHcCCEEE
Confidence 4679999999999999995 5566444444332211 347899999999875
No 425
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=20.85 E-value=4e+02 Score=23.49 Aligned_cols=52 Identities=10% Similarity=0.174 Sum_probs=35.2
Q ss_pred CCCeEEEEecCChhHHHHH-HHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEE
Q 044601 14 SKQRILLVGEGDFSFSLCL-AREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFY 76 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aL-a~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~ 76 (213)
+++.|..-.-||+.-|+|+ ++.+|-...|+.-.--+ ..+++.++.+|++|..
T Consensus 58 ~g~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~-----------~~k~~~~~~~GA~v~~ 110 (290)
T TIGR01138 58 PGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMS-----------QERKAAMRAYGAELIL 110 (290)
T ss_pred CCCEEEEECCChHHHHHHHHHHHcCCeEEEEECCCCC-----------HHHHHHHHHcCCEEEE
Confidence 4577999999999999999 45555443333321111 3467889999998864
No 426
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=20.80 E-value=2e+02 Score=24.87 Aligned_cols=34 Identities=12% Similarity=0.309 Sum_probs=22.1
Q ss_pred CCCCCeEEEEecCChhHHHH-HHHHhCCCCeEEEec
Q 044601 12 YSSKQRILLVGEGDFSFSLC-LAREFGFAHNMVATC 46 (213)
Q Consensus 12 y~~~~~ILlVGEGnFSFS~a-La~~~~~~~~l~ATs 46 (213)
-.++++||+.|.|....+++ +|+..+ +.++++|+
T Consensus 165 ~~~~~~vlI~g~~~vg~~~~~~a~~~g-~~~v~~~~ 199 (340)
T cd05284 165 LDPGSTVVVIGVGGLGHIAVQILRALT-PATVIAVD 199 (340)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHhC-CCcEEEEe
Confidence 45679999999876555443 355554 36677764
No 427
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=20.76 E-value=3.9e+02 Score=25.80 Aligned_cols=77 Identities=16% Similarity=0.255 Sum_probs=0.0
Q ss_pred CCCCeEEEEecCChhHHHHHHHHhCCCCeEEEec---------------cCCHHHHHhhcchHHHHHHHHHhCCCEEEEe
Q 044601 13 SSKQRILLVGEGDFSFSLCLAREFGFAHNMVATC---------------LDTQETIANKYSNAVDNVRELEERGCLVFYG 77 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs---------------~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~g 77 (213)
..+++|++||-|=-.-+.|..-+.. +..|+... +.-..++.. .-++.++++|+.+.++
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~-G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~------~~l~~~~~~Gv~~~~~ 207 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRM-GHAVTIFEAGPKLGGMMRYGIPAYRLPREVLD------AEIQRILDLGVEVRLG 207 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCCCCeeeecCCCccCCHHHHH------HHHHHHHHCCCEEEeC
Q ss_pred eec-cccCCCccccCCcccEEE
Q 044601 78 VDA-MQMSQHFFLRTHKFDRVI 98 (213)
Q Consensus 78 VDA-t~L~~~~~l~~~~FDrIi 98 (213)
... ..+..... ...||.||
T Consensus 208 ~~~~~~~~~~~~--~~~~D~Vi 227 (564)
T PRK12771 208 VRVGEDITLEQL--EGEFDAVF 227 (564)
T ss_pred CEECCcCCHHHH--HhhCCEEE
No 428
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=20.75 E-value=2e+02 Score=25.75 Aligned_cols=18 Identities=33% Similarity=0.497 Sum_probs=12.8
Q ss_pred HHHHHHhCCCEEEEeeec
Q 044601 63 NVRELEERGCLVFYGVDA 80 (213)
Q Consensus 63 ni~~L~~~g~~V~~gVDA 80 (213)
-++.|.+.|+.+..+..+
T Consensus 74 ~~~~l~~~~i~~~~~~~v 91 (352)
T PRK12770 74 GVKELEEAGVVFHTRTKV 91 (352)
T ss_pred HHHHHHhCCeEEecCcEE
Confidence 456777788888777544
No 429
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=20.66 E-value=1.9e+02 Score=24.52 Aligned_cols=38 Identities=16% Similarity=0.243 Sum_probs=24.8
Q ss_pred ccCCCCCCeEEEEecCChhHHHH-HHHHhCCCCe-EEEeccC
Q 044601 9 SNHYSSKQRILLVGEGDFSFSLC-LAREFGFAHN-MVATCLD 48 (213)
Q Consensus 9 ~~~y~~~~~ILlVGEGnFSFS~a-La~~~~~~~~-l~ATs~d 48 (213)
+....++.+||+.|.|-...+++ +|++.| .. +++|+-+
T Consensus 124 ~~~~~~~~~vlI~g~g~vg~~~~~la~~~g--~~~v~~~~~~ 163 (312)
T cd08269 124 RGWIRAGKTVAVIGAGFIGLLFLQLAAAAG--ARRVIAIDRR 163 (312)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCC
Confidence 34456789999999876555433 355654 55 7777655
No 430
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=20.56 E-value=2.3e+02 Score=30.19 Aligned_cols=83 Identities=12% Similarity=0.291 Sum_probs=0.0
Q ss_pred CCCCeEEEEecCChhHHHHH-HHHhCCCCeEEEeccCCHHHHHhhcch-------HHHHHHHHHhCCCEEEEeeec-ccc
Q 044601 13 SSKQRILLVGEGDFSFSLCL-AREFGFAHNMVATCLDTQETIANKYSN-------AVDNVRELEERGCLVFYGVDA-MQM 83 (213)
Q Consensus 13 ~~~~~ILlVGEGnFSFS~aL-a~~~~~~~~l~ATs~ds~~~l~~kY~~-------a~~ni~~L~~~g~~V~~gVDA-t~L 83 (213)
.++++|++||=|-=-.|+|. ++..|-.+.|+-..-.--..+..-.|. ....++.+++.|+.+..++.+ ..+
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~Vdi~l 616 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSPDLTV 616 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCceeEEEh
Q ss_pred CCCccccCCcccEEE
Q 044601 84 SQHFFLRTHKFDRVI 98 (213)
Q Consensus 84 ~~~~~l~~~~FDrIi 98 (213)
. .++...||.||
T Consensus 617 e---~L~~~gYDaVI 628 (1019)
T PRK09853 617 E---QLKNEGYDYVV 628 (1019)
T ss_pred h---hheeccCCEEE
No 431
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=20.55 E-value=1.5e+02 Score=24.83 Aligned_cols=33 Identities=21% Similarity=0.465 Sum_probs=21.0
Q ss_pred CCCeEEEEecCChhHHHHH-HHHhCCCCeEEEeccC
Q 044601 14 SKQRILLVGEGDFSFSLCL-AREFGFAHNMVATCLD 48 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aL-a~~~~~~~~l~ATs~d 48 (213)
++++||+||=|.-...++- ....+ ..|+..+-+
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~g--a~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYG--AHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEcCC
Confidence 4789999999998876542 22333 455444433
No 432
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=20.54 E-value=4.3e+02 Score=21.83 Aligned_cols=78 Identities=19% Similarity=0.310 Sum_probs=40.2
Q ss_pred CCeEEEEecCChhHHHHHHHHh-CCCCeEEEeccCCHHHHHhhcchHHHHHHHHHh-CC--CEEEEeeeccccCCCccc-
Q 044601 15 KQRILLVGEGDFSFSLCLAREF-GFAHNMVATCLDTQETIANKYSNAVDNVRELEE-RG--CLVFYGVDAMQMSQHFFL- 89 (213)
Q Consensus 15 ~~~ILlVGEGnFSFS~aLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~-~g--~~V~~gVDAt~L~~~~~l- 89 (213)
+++||++|=+. .--.+|++++ ..+.+|+.+..+. +. .....+.|+. .| -...+.+|.++-.....+
T Consensus 2 ~k~ilItG~~~-~IG~~la~~l~~~g~~vi~~~r~~-~~-------~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~ 72 (259)
T PRK12384 2 NQVAVVIGGGQ-TLGAFLCHGLAEEGYRVAVADINS-EK-------AANVAQEINAEYGEGMAYGFGADATSEQSVLALS 72 (259)
T ss_pred CCEEEEECCCc-HHHHHHHHHHHHCCCEEEEEECCH-HH-------HHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHH
Confidence 35799999543 3344444443 1246787776542 21 1223334433 22 234677888864432111
Q ss_pred -----cCCcccEEEEcC
Q 044601 90 -----RTHKFDRVIYNF 101 (213)
Q Consensus 90 -----~~~~FDrIiFNF 101 (213)
.....|.||.|=
T Consensus 73 ~~~~~~~~~id~vv~~a 89 (259)
T PRK12384 73 RGVDEIFGRVDLLVYNA 89 (259)
T ss_pred HHHHHHcCCCCEEEECC
Confidence 124678888774
No 433
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=20.49 E-value=1.1e+02 Score=25.11 Aligned_cols=13 Identities=23% Similarity=0.593 Sum_probs=7.5
Q ss_pred CeEEEEecCChhH
Q 044601 16 QRILLVGEGDFSF 28 (213)
Q Consensus 16 ~~ILlVGEGnFSF 28 (213)
..|+++|||.|-+
T Consensus 61 ~vv~i~GDG~f~m 73 (179)
T cd03372 61 KVIVIDGDGSLLM 73 (179)
T ss_pred cEEEEECCcHHHh
Confidence 4556666666644
No 434
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=20.43 E-value=2.2e+02 Score=22.57 Aligned_cols=96 Identities=20% Similarity=0.344 Sum_probs=51.1
Q ss_pred eEEEEecCChhHHHHHHHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhC--------CCEEEEeeeccc-cCCCc
Q 044601 17 RILLVGEGDFSFSLCLAREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEER--------GCLVFYGVDAMQ-MSQHF 87 (213)
Q Consensus 17 ~ILlVGEGnFSFS~aLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~--------g~~V~~gVDAt~-L~~~~ 87 (213)
+|.++|=|++..++|-.-... +.+|+--+.+. +.++.|++. ++..-..+.+|. +.+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~-g~~V~l~~~~~------------~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~-- 65 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN-GHEVTLWGRDE------------EQIEEINETRQNPKYLPGIKLPENIKATTDLEE-- 65 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC-TEEEEEETSCH------------HHHHHHHHHTSETTTSTTSBEETTEEEESSHHH--
T ss_pred CEEEECcCHHHHHHHHHHHHc-CCEEEEEeccH------------HHHHHHHHhCCCCCCCCCcccCcccccccCHHH--
Confidence 689999999999887754432 45555555542 222333322 233333344432 111
Q ss_pred cccCCcccEEEEcCCcCCCcccccchHHHHhhHHHHHHHHHHHHhhcccCCCeEEEEeccC
Q 044601 88 FLRTHKFDRVIYNFPHVGFIFRENSYCQIQLNKELVKGFLRNAKLLLKEENGEIHVTHKEG 148 (213)
Q Consensus 88 ~l~~~~FDrIiFNFPH~G~~~~e~~~~~i~~n~~Ll~~Ff~Sa~~~L~~~~G~ihvTl~~~ 148 (213)
. -..-|.||.-=|-.+. +.+++..+.+++ .|.+.|.+..|
T Consensus 66 a--~~~ad~IiiavPs~~~-----------------~~~~~~l~~~l~--~~~~ii~~~KG 105 (157)
T PF01210_consen 66 A--LEDADIIIIAVPSQAH-----------------REVLEQLAPYLK--KGQIIISATKG 105 (157)
T ss_dssp H--HTT-SEEEE-S-GGGH-----------------HHHHHHHTTTSH--TT-EEEETS-S
T ss_pred H--hCcccEEEecccHHHH-----------------HHHHHHHhhccC--CCCEEEEecCC
Confidence 1 1346999998887663 256666677775 66666666545
No 435
>COG5564 Predicted TIM-barrel enzyme, possibly a dioxygenase [General function prediction only]
Probab=20.40 E-value=54 Score=29.13 Aligned_cols=59 Identities=31% Similarity=0.372 Sum_probs=38.1
Q ss_pred ccCCHHHHHhhcchHHHH-HHHHHh-----CCCEEEEeeeccccCCCc-----cccCCcccEEEEcCCcCCC
Q 044601 46 CLDTQETIANKYSNAVDN-VRELEE-----RGCLVFYGVDAMQMSQHF-----FLRTHKFDRVIYNFPHVGF 106 (213)
Q Consensus 46 s~ds~~~l~~kY~~a~~n-i~~L~~-----~g~~V~~gVDAt~L~~~~-----~l~~~~FDrIiFNFPH~G~ 106 (213)
.++|...|+. |.|+.+. ++.+++ ....|+.||++|+---.. .|+...|--|+ |||-+|.
T Consensus 57 g~~Sl~gLLa-~~naN~~vld~a~e~lp~~r~tpv~aGv~~~DPf~~~~~~L~~L~~~gf~gV~-NFPTv~~ 126 (276)
T COG5564 57 GRGSLAGLLA-YGNANDIVLDMAREVLPVVRQTPVLAGVNGTDPFCRMVDFLKELKTAGFSGVQ-NFPTVGL 126 (276)
T ss_pred ccchhhhhhh-ccCccHHHHHHHHhhCCccccCcceecccCCCcchhHHHHHHHHHhcCCcccc-cCCeeEE
Confidence 3445544544 7787664 456655 357899999999854221 13456677665 9999985
No 436
>PRK10262 thioredoxin reductase; Provisional
Probab=20.34 E-value=2.6e+02 Score=24.40 Aligned_cols=66 Identities=9% Similarity=0.152 Sum_probs=34.9
Q ss_pred CCCeEEEEecCChhHHHHHH-HHhCCCCeEEEeccCCHHHHHhhcch-HHHHHHHHHhCCCEEEEeeeccccC
Q 044601 14 SKQRILLVGEGDFSFSLCLA-REFGFAHNMVATCLDTQETIANKYSN-AVDNVRELEERGCLVFYGVDAMQMS 84 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aLa-~~~~~~~~l~ATs~ds~~~l~~kY~~-a~~ni~~L~~~g~~V~~gVDAt~L~ 84 (213)
.+++|++||.|+=..-.|.. ...+..+.|+.- .+. +.. -+. ...-.+.|++.|++++.+.-.+.+.
T Consensus 145 ~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~-~~~---~~~-~~~~~~~~~~~l~~~gV~i~~~~~v~~v~ 212 (321)
T PRK10262 145 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHR-RDG---FRA-EKILIKRLMDKVENGNIILHTNRTLEEVT 212 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEE-CCc---cCC-CHHHHHHHHhhccCCCeEEEeCCEEEEEE
Confidence 46899999999754443331 222322222221 111 100 011 2334567888899998876665554
No 437
>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.
Probab=20.12 E-value=3.7e+02 Score=19.93 Aligned_cols=80 Identities=23% Similarity=0.188 Sum_probs=42.6
Q ss_pred eEEEEecCChhHHHHHHHHhC-CC-CeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEE-EEeeeccccCCCccc----
Q 044601 17 RILLVGEGDFSFSLCLAREFG-FA-HNMVATCLDTQETIANKYSNAVDNVRELEERGCLV-FYGVDAMQMSQHFFL---- 89 (213)
Q Consensus 17 ~ILlVGEGnFSFS~aLa~~~~-~~-~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V-~~gVDAt~L~~~~~l---- 89 (213)
++|+.| |.=....+|++.+. .+ ..|+.++..... ... ....++.+++.|..+ .+.+|.++..+...+
T Consensus 2 ~~li~G-a~~~iG~~~~~~l~~~g~~~v~~~~r~~~~-~~~----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 75 (180)
T smart00822 2 TYLITG-GLGGLGLELARWLAERGARHLVLLSRSGPD-APG----AAELLAELEALGAEVTVVACDVADRAALAAALAAI 75 (180)
T ss_pred EEEEEc-CCChHHHHHHHHHHHhhCCeEEEEeCCCCC-Ccc----HHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHH
Confidence 577777 44456666666552 12 356666544221 100 112256677777655 577888765432211
Q ss_pred --cCCcccEEEEcCC
Q 044601 90 --RTHKFDRVIYNFP 102 (213)
Q Consensus 90 --~~~~FDrIiFNFP 102 (213)
.....|.||.|-.
T Consensus 76 ~~~~~~id~li~~ag 90 (180)
T smart00822 76 PARLGPLRGVIHAAG 90 (180)
T ss_pred HHHcCCeeEEEEccc
Confidence 1245788888753
No 438
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.11 E-value=1.3e+02 Score=23.00 Aligned_cols=54 Identities=19% Similarity=0.165 Sum_probs=32.6
Q ss_pred HHHHHHHHhC-CCCeEEEeccCCHHHHHhh-c----chHHHHHHHHHhCCCEEEEeeeccc
Q 044601 28 FSLCLAREFG-FAHNMVATCLDTQETIANK-Y----SNAVDNVRELEERGCLVFYGVDAMQ 82 (213)
Q Consensus 28 FS~aLa~~~~-~~~~l~ATs~ds~~~l~~k-Y----~~a~~ni~~L~~~g~~V~~gVDAt~ 82 (213)
+|+.|++--| .+.||+-|-.|-+-+=.+- - =+-.+..+.|++.|+ ++|.||---
T Consensus 24 ~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~~ldydei~~~iE~~Gg-~IHSiDevv 83 (97)
T COG1888 24 LALELSKLEGVEGVNITVTEIDVETENLKITIEGTNLDYDEIEEVIEELGG-AIHSIDEVV 83 (97)
T ss_pred HHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcCCCCHHHHHHHHHHcCC-eeeehhhhh
Confidence 5666665443 4789999988854321110 0 023455677888998 668888543
No 439
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=20.09 E-value=1.1e+02 Score=24.39 Aligned_cols=9 Identities=22% Similarity=0.076 Sum_probs=4.1
Q ss_pred CeEEEeccC
Q 044601 40 HNMVATCLD 48 (213)
Q Consensus 40 ~~l~ATs~d 48 (213)
..+++.+=|
T Consensus 67 ~~vv~i~GD 75 (172)
T cd02004 67 KRVVLVEGD 75 (172)
T ss_pred CeEEEEEcc
Confidence 344444444
No 440
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=20.06 E-value=2.2e+02 Score=30.09 Aligned_cols=65 Identities=12% Similarity=0.327 Sum_probs=39.2
Q ss_pred CCCeEEEEecCChhHHHHH-HHHhCCCCeEEEeccCCHHHHHhhcchHHHHHHHHHhCCCEEEEeeecccc
Q 044601 14 SKQRILLVGEGDFSFSLCL-AREFGFAHNMVATCLDTQETIANKYSNAVDNVRELEERGCLVFYGVDAMQM 83 (213)
Q Consensus 14 ~~~~ILlVGEGnFSFS~aL-a~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V~~gVDAt~L 83 (213)
.+++|++||-||-..-.|- +..+|.. .++.-...+..++ |....-++.+++.|+.++++...+++
T Consensus 570 ~Gk~VvVIGgG~tA~D~A~~a~rlGa~-~Vtiv~rr~~~em----~a~~~e~~~a~eeGI~~~~~~~p~~i 635 (1006)
T PRK12775 570 LGKSVVVIGAGNTAMDCLRVAKRLGAP-TVRCVYRRSEAEA----PARIEEIRHAKEEGIDFFFLHSPVEI 635 (1006)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCC-EEEEEeecCcccC----CCCHHHHHHHHhCCCEEEecCCcEEE
Confidence 5799999999998876543 4455532 2321112222222 22233356788889999988766665
No 441
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=20.03 E-value=4e+02 Score=25.34 Aligned_cols=88 Identities=15% Similarity=0.232 Sum_probs=44.5
Q ss_pred ccccCCC----CCCeEEEEecCChhHHHHH-HHHhCCCCeEEEeccCCHHHHH-------hhc--c-h-HHHHHHHHHhC
Q 044601 7 KWSNHYS----SKQRILLVGEGDFSFSLCL-AREFGFAHNMVATCLDTQETIA-------NKY--S-N-AVDNVRELEER 70 (213)
Q Consensus 7 k~~~~y~----~~~~ILlVGEGnFSFS~aL-a~~~~~~~~l~ATs~ds~~~l~-------~kY--~-~-a~~ni~~L~~~ 70 (213)
.|..++. ..++|++||-|=-..++|. ++..+ .. .|.+|..+.+. ..| + + ...-++.+++.
T Consensus 131 ~~~~~~~~~~~~~~~V~IIGaG~aGl~aA~~L~~~g--~~--V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~ 206 (485)
T TIGR01317 131 GWVQPRPPSKRTGKKVAVVGSGPAGLAAADQLNRAG--HT--VTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAE 206 (485)
T ss_pred CCCCCCCCcCCCCCEEEEECCcHHHHHHHHHHHHcC--Ce--EEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhC
Confidence 4555542 3489999999954444443 12223 22 23344322110 000 1 1 12346788999
Q ss_pred CCEEEEeeeccccCCCccccCCcccEEEE
Q 044601 71 GCLVFYGVDAMQMSQHFFLRTHKFDRVIY 99 (213)
Q Consensus 71 g~~V~~gVDAt~L~~~~~l~~~~FDrIiF 99 (213)
|+.++.+..++.--....+ ...||.||.
T Consensus 207 Gv~~~~~~~v~~~~~~~~~-~~~~d~Vil 234 (485)
T TIGR01317 207 GIDFVTNTEIGVDISADEL-KEQFDAVVL 234 (485)
T ss_pred CCEEECCCEeCCccCHHHH-HhhCCEEEE
Confidence 9999888765421000111 245888886
Done!