BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044602
(674 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 98/191 (51%), Gaps = 14/191 (7%)
Query: 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKG-----NITYNDIPYNPA 164
+ LK + +I GE +++MGPSGSGK+T+L I+G L +G NI ND+ +
Sbjct: 19 YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGC-LDKPTEGEVYIDNIKTNDLDDDEL 77
Query: 165 LKRR---IGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC 221
K R IGFV Q L+P LT E + + G M+ +++ R LK LE
Sbjct: 78 TKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEE- 136
Query: 222 RHTRVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK 281
R +++R +I + +P ++L D+PT LDS + K++Q+L+K+ +
Sbjct: 137 ---RFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNE 193
Query: 282 A-GRTVITTIH 291
G+TV+ H
Sbjct: 194 EDGKTVVVVTH 204
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 98/191 (51%), Gaps = 14/191 (7%)
Query: 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKG-----NITYNDIPYNPA 164
+ LK + +I GE +++MGPSGSGK+T+L I+G L +G NI ND+ +
Sbjct: 19 YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGC-LDKPTEGEVYIDNIKTNDLDDDEL 77
Query: 165 LKRR---IGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC 221
K R IGFV Q L+P LT E + + G M+ +++ R LK LE
Sbjct: 78 TKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEE- 136
Query: 222 RHTRVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK 281
R +++R +I + +P ++L D+PT LDS + K++Q+L+K+ +
Sbjct: 137 ---RFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNE 193
Query: 282 A-GRTVITTIH 291
G+TV+ H
Sbjct: 194 EDGKTVVVVTH 204
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 111/235 (47%), Gaps = 20/235 (8%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT----DDVKGNITYNDIPYNPALK 166
+ K I I GE + +GPSG GK+TLL+++ G T D G ND P PA +
Sbjct: 18 VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTP--PA-E 74
Query: 167 RRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRV 226
R +G V Q L P L+V E + F L+L G ++ RV + + L L +
Sbjct: 75 RGVGMVFQSYALYPHLSVAENMSFG--LKLAG-AKKEVINQRVNQVAEVLQL-----AHL 126
Query: 227 XXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKL-IQVLQKVAKAGRT 285
+R+R +IG ++ +PS+ LLDEP S LD+ ++ I++ + + GRT
Sbjct: 127 LDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRT 186
Query: 286 VITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFSS---LGFIPEIAMN 337
+I H M + DK++++ G GK E Y + GFI MN
Sbjct: 187 MIYVTHDQVEAMT-LADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKMN 240
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 111/235 (47%), Gaps = 20/235 (8%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT----DDVKGNITYNDIPYNPALK 166
+ K I I GE + +GPSG GK+TLL+++ G T D G ND P PA +
Sbjct: 18 VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTP--PA-E 74
Query: 167 RRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRV 226
R +G V Q L P L+V E + F L+L G ++ RV + + L L +
Sbjct: 75 RGVGMVFQSYALYPHLSVAENMSFG--LKLAG-AKKEVINQRVNQVAEVLQL-----AHL 126
Query: 227 XXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKL-IQVLQKVAKAGRT 285
+R+R +IG ++ +PS+ LLDEP S LD+ ++ I++ + + GRT
Sbjct: 127 LDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRT 186
Query: 286 VITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFSS---LGFIPEIAMN 337
+I H M + DK++++ G GK E Y + GFI MN
Sbjct: 187 MIYVTHDQVEAMT-LADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKMN 240
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 111/235 (47%), Gaps = 20/235 (8%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT----DDVKGNITYNDIPYNPALK 166
+ K I I GE + +GPSG GK+TLL+++ G T D G ND P PA +
Sbjct: 18 VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTP--PA-E 74
Query: 167 RRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRV 226
R +G V Q L P L+V E + F L+L G ++ RV + + L L +
Sbjct: 75 RGVGMVFQSYALYPHLSVAENMSFG--LKLAG-AKKEVINQRVNQVAEVLQL-----AHL 126
Query: 227 XXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKL-IQVLQKVAKAGRT 285
+R+R +IG ++ +PS+ LLD+P S LD+ ++ I++ + + GRT
Sbjct: 127 LDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRT 186
Query: 286 VITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFSS---LGFIPEIAMN 337
+I H M + DK++++ G GK E Y + GFI MN
Sbjct: 187 MIYVTHDQVEAMT-LADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKMN 240
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 79.3 bits (194), Expect = 6e-15, Method: Composition-based stats.
Identities = 58/191 (30%), Positives = 99/191 (51%), Gaps = 19/191 (9%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVG-------GRLTDDVKGNITYNDIPYNP 163
ILKGI+ S+ GE ++++G SGSGK+TLL I+G G++ + K N+ +
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 164 ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYA--RVQMILKELGLERC 221
R++GFV Q L+P+LT E ++ M + +K A R + +L ELGL
Sbjct: 79 LRNRKLGFVFQFHYLIPELTALENVIVPML-----KMGKPKKEAKERGEYLLSELGLGD- 132
Query: 222 RHTRVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK 281
+ +R E++R +I + +P LL DEPT LDS + +++ + K+ +
Sbjct: 133 KLSR----KPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINE 188
Query: 282 AGRTVITTIHQ 292
G +++ H+
Sbjct: 189 GGTSIVMVTHE 199
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 108/222 (48%), Gaps = 25/222 (11%)
Query: 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIV--------GGRLTDDVKGNITYNDIPY 161
+LKGI I GE++ ++GPSGSGK+T L+ + G + D + N+ D
Sbjct: 17 EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGI--NLKAKDTNL 74
Query: 162 NPALKRRIGFVTQDDVLLPQLTVEETLVFAAF--LRLPGNMNRQQKYARVQMILKELGLE 219
N ++ +G V Q L P +TV + A + P R++ A+ +L ++GL+
Sbjct: 75 N-KVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWP----REKAEAKAMELLDKVGLK 129
Query: 220 RCRHTRVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKV 279
H + +R +I + ++P ++L DEPTS LD +++ V++++
Sbjct: 130 DKAHA-----YPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQL 184
Query: 280 AKAGRTVITTIHQPS-SRMFHMFDKLLLISEGYPVYYGKARE 320
A G T++ H+ +R + D++L + GY + GK +
Sbjct: 185 ANEGMTMVVVTHEMGFAR--EVGDRVLFMDGGYIIEEGKPED 224
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 108/221 (48%), Gaps = 25/221 (11%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIV--------GGRLTDDVKGNITYNDIPYN 162
+LKGI I GE++ ++GPSGSGK+T L+ + G + D + N+ D N
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGI--NLKAKDTNLN 96
Query: 163 PALKRRIGFVTQDDVLLPQLTVEETLVFAAF--LRLPGNMNRQQKYARVQMILKELGLER 220
++ +G V Q L P +TV + A + P R++ A+ +L ++GL+
Sbjct: 97 -KVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWP----REKAEAKAMELLDKVGLKD 151
Query: 221 CRHTRVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVA 280
H + +R +I + ++P ++L DEPTS LD +++ V++++A
Sbjct: 152 KAHA-----YPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLA 206
Query: 281 KAGRTVITTIHQPS-SRMFHMFDKLLLISEGYPVYYGKARE 320
G T++ H+ +R + D++L + GY + GK +
Sbjct: 207 NEGMTMVVVTHEMGFAR--EVGDRVLFMDGGYIIEEGKPED 245
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 94/191 (49%), Gaps = 14/191 (7%)
Query: 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKG-----NITYNDIPYNPA 164
+ LK + +I GE +++ GPSGSGK+T L I+G L +G NI ND+ +
Sbjct: 19 YALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGC-LDKPTEGEVYIDNIKTNDLDDDEL 77
Query: 165 LKRR---IGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC 221
K R IGFV Q L+P LT E + + G + +++ R LK LE
Sbjct: 78 TKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAELEE- 136
Query: 222 RHTRVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK 281
R +++R +I + +P ++L DEPT LDS + K+ Q+L+K+ +
Sbjct: 137 ---RFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNE 193
Query: 282 A-GRTVITTIH 291
G+TV+ H
Sbjct: 194 EDGKTVVVVTH 204
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 119/239 (49%), Gaps = 28/239 (11%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYND--IPYN-----PA 164
L + +I GE ++GPSG+GKTT ++I+ G L G + ++D + N P
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAG-LDVPSTGELYFDDRLVASNGKLIVPP 79
Query: 165 LKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHT 224
R+IG V Q L P LT E + AF M++++ RV+ + K L +
Sbjct: 80 EDRKIGMVFQTWALYPNLTAFENI---AFPLTNMKMSKEEIRKRVEEVAKILDIHH---- 132
Query: 225 RVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDS---TSANKLIQVLQKVAK 281
V +++R ++ ++ DPSLLLLDEP S LD+ SA L++ +Q ++
Sbjct: 133 -VLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQ--SR 189
Query: 282 AGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARE------SMEYFSSLGFIPEI 334
G T++ H P+ +F + D++ ++ +G V GK + S++ S +G I E+
Sbjct: 190 LGVTLLVVSHDPAD-IFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLIGEINEL 247
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 119/239 (49%), Gaps = 28/239 (11%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYND--IPYN-----PA 164
L + +I GE ++GPSG+GKTT ++I+ G L G + ++D + N P
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAG-LDVPSTGELYFDDRLVASNGKLIVPP 79
Query: 165 LKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHT 224
R+IG V Q L P LT E + AF M++++ RV+ + K L +
Sbjct: 80 EDRKIGMVFQTWALYPNLTAFENI---AFPLTNMKMSKEEIRKRVEEVAKILDIHH---- 132
Query: 225 RVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDS---TSANKLIQVLQKVAK 281
V +++R ++ ++ DPSLLLLDEP S LD+ SA L++ +Q ++
Sbjct: 133 -VLNHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQ--SR 189
Query: 282 AGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARE------SMEYFSSLGFIPEI 334
G T++ H P+ +F + D++ ++ +G V GK + S++ S +G I E+
Sbjct: 190 LGVTLLVVSHDPAD-IFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLIGEINEL 247
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 112/223 (50%), Gaps = 20/223 (8%)
Query: 107 DYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPA-- 164
D H LKGI +I GE+ A++G +G GK+TL + G L G I +++ P + +
Sbjct: 19 DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS-SGRILFDNKPIDYSRK 77
Query: 165 ----LKRRIGFVTQD-DVLLPQLTVEETLVFAAF-LRLPGNMNRQQKYARVQMILKELGL 218
L+ IG V QD D L +V + + F A ++LP + R+ RV LK G+
Sbjct: 78 GIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRK----RVDNALKRTGI 133
Query: 219 ERCRHTRVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQK 278
E + ++KR +I ++++P +L+LDEPT+GLD ++++++L +
Sbjct: 134 EHLKDK-----PTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVE 188
Query: 279 VAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARE 320
+ K G T+I H + D + ++ EG + G +E
Sbjct: 189 MQKELGITIIIATHDIDIVPLYC-DNVFVMKEGRVILQGNPKE 230
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 106/216 (49%), Gaps = 14/216 (6%)
Query: 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-ALKRR 168
++LK + G+I ++G +GSGKTTLLKI+ G L G I + P +P L++
Sbjct: 25 YVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLA--AAGEIFLDGSPADPFLLRKN 82
Query: 169 IGFVTQD-DVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVX 227
+G+V Q+ + TVEE + F+ L + G ++ + R++ +L+ +GL + +
Sbjct: 83 VGYVFQNPSSQIIGATVEEDVAFS--LEIMG-LDESEMRKRIKKVLELVGL-----SGLA 134
Query: 228 XXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVI 287
+++R +I + D L LDEP S LD S ++ QVL+ + G+ +I
Sbjct: 135 AADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGII 194
Query: 288 TTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESME 323
H+ D +L IS G + G E +E
Sbjct: 195 LVTHE--LEYLDDMDFILHISNGTIDFCGSWEEFVE 228
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 103/212 (48%), Gaps = 13/212 (6%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN--DIPYNPALKRRI 169
L I I GE +AL+GPSGSGK+TLL + G + G I ++ D+ P R +
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAG-IYKPTSGKIYFDEKDVTELPPKDRNV 77
Query: 170 GFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVXXX 229
G V Q+ L P +TV + + F LR R++ +V+ + K L +++ +
Sbjct: 78 GLVFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLN-----R 129
Query: 230 XXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVIT 288
+++R +I ++ +P +LLLDEP S LD+ ++ L+++ K G T +
Sbjct: 130 YPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVY 189
Query: 289 TIHQPSSRMFHMFDKLLLISEGYPVYYGKARE 320
H + M D++ +I EG + G E
Sbjct: 190 VTHD-QAEALAMADRIAVIREGEILQVGTPDE 220
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 118/233 (50%), Gaps = 34/233 (14%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGG-RLTDDVKGNITYNDIPY-NPA-LKR 167
IL I SI GE++ ++G SGSGK+TL K++ + ++ + I +D+ +P L+R
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRR 77
Query: 168 RIGFVTQDDVLL------------PQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKE 215
++G V QD+VLL P ++VE+ +++AA K A + E
Sbjct: 78 QVGVVLQDNVLLNRSIIDNISLANPGMSVEK-VIYAA------------KLAGAHDFISE 124
Query: 216 LGLERCRHTRVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQV 275
L R + + +R+R +I ++ +P +L+ DE TS LD S + +++
Sbjct: 125 L---REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 181
Query: 276 LQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFSSL 328
+ K+ K GRTVI H+ S+ D+++++ +G V GK +E + SL
Sbjct: 182 MHKICK-GRTVIIIAHRLST--VKNADRIIVMEKGKIVEQGKHKELLSEPESL 231
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 118/233 (50%), Gaps = 34/233 (14%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGG-RLTDDVKGNITYNDIPY-NPA-LKR 167
IL I SI GE++ ++G SGSGK+TL K++ + ++ + I +D+ +P L+R
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRR 83
Query: 168 RIGFVTQDDVLL------------PQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKE 215
++G V QD+VLL P ++VE+ +++AA K A + E
Sbjct: 84 QVGVVLQDNVLLNRSIIDNISLANPGMSVEK-VIYAA------------KLAGAHDFISE 130
Query: 216 LGLERCRHTRVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQV 275
L R + + +R+R +I ++ +P +L+ DE TS LD S + +++
Sbjct: 131 L---REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 187
Query: 276 LQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFSSL 328
+ K+ K GRTVI H+ S+ D+++++ +G V GK +E + SL
Sbjct: 188 MHKICK-GRTVIIIAHRLST--VKNADRIIVMEKGKIVEQGKHKELLSEPESL 237
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 118/233 (50%), Gaps = 34/233 (14%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGG-RLTDDVKGNITYNDIPY-NPA-LKR 167
IL I SI GE++ ++G SGSGK+TL K++ + ++ + I +D+ +P L+R
Sbjct: 20 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRR 79
Query: 168 RIGFVTQDDVLL------------PQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKE 215
++G V QD+VLL P ++VE+ +++AA K A + E
Sbjct: 80 QVGVVLQDNVLLNRSIIDNISLANPGMSVEK-VIYAA------------KLAGAHDFISE 126
Query: 216 LGLERCRHTRVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQV 275
L R + + +R+R +I ++ +P +L+ DE TS LD S + +++
Sbjct: 127 L---REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 183
Query: 276 LQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFSSL 328
+ K+ K GRTVI H+ S+ D+++++ +G V GK +E + SL
Sbjct: 184 MHKICK-GRTVIIIAHRLST--VKNADRIIVMEKGKIVEQGKHKELLSEPESL 233
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 72.4 bits (176), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 105/228 (46%), Gaps = 22/228 (9%)
Query: 122 GEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDI----P----YNPALKRRIGFVT 173
GE + L+GPSG GKTT L+++ G L + +G I D P + P R I V
Sbjct: 29 GEFMILLGPSGCGKTTTLRMIAG-LEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVF 87
Query: 174 QDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVXXXXXXX 233
Q L P +TV + + F LR + RQ+ RV+ + + LGL T +
Sbjct: 88 QSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGL-----TELLNRKPRE 139
Query: 234 XXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQ 292
+R+R ++G I+ P + L+DEP S LD+ ++ L+K+ + G T I H
Sbjct: 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHD 199
Query: 293 PSSRMFHMFDKLLLISEGYPVYYGKARESMEYFSSL---GFIPEIAMN 337
M M D++ +++ G G E + ++ GFI MN
Sbjct: 200 QVEAM-TMGDRIAVMNRGVLQQVGSPDEVYDKPANTFVAGFIGSPPMN 246
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 118/233 (50%), Gaps = 34/233 (14%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGG-RLTDDVKGNITYNDIPY-NPA-LKR 167
IL I SI GE++ ++G +GSGK+TL K++ + ++ + I +D+ +P L+R
Sbjct: 20 ILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRR 79
Query: 168 RIGFVTQDDVLL------------PQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKE 215
++G V QD+VLL P ++VE+ +++AA K A + E
Sbjct: 80 QVGVVLQDNVLLNRSIIDNISLANPGMSVEK-VIYAA------------KLAGAHDFISE 126
Query: 216 LGLERCRHTRVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQV 275
L R + + +R+R +I ++ +P +L+ DE TS LD S + +++
Sbjct: 127 L---REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 183
Query: 276 LQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFSSL 328
+ K+ K GRTVI H+ S+ D+++++ +G V GK +E + SL
Sbjct: 184 MHKICK-GRTVIIIAHRLST--VKNADRIIVMEKGKIVEQGKHKELLSEPESL 233
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 109/225 (48%), Gaps = 23/225 (10%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGN--ITYNDIPYNPALKRRI 169
++G++ I GE++ L+GPSGSGKTT+L+++ G L KG+ I + P KR +
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAG-LERPTKGDVWIGGKRVTDLPPQKRNV 89
Query: 170 GFVTQDDVLLPQLTVEETLVFA-AFLRLPGNMNRQQKYARVQMILKELGLE----RCRHT 224
G V Q+ L +TV + + F R+P + + ARV+ +L+ + LE R H
Sbjct: 90 GLVFQNYALFQHMTVYDNVSFGLREKRVP----KDEMDARVRELLRFMRLESYANRFPHE 145
Query: 225 RVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKV-AKAG 283
+++R ++ + P +LL DEP + +D+ +L +++V + G
Sbjct: 146 ---------LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMG 196
Query: 284 RTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFSSL 328
T + H + D++L++ EG +G E E +L
Sbjct: 197 VTSVFVTHD-QEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTL 240
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 118/233 (50%), Gaps = 34/233 (14%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGG-RLTDDVKGNITYNDIPY-NPA-LKR 167
IL I SI GE++ ++G SGSGK+TL K++ + ++ + I +D+ +P L+R
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRR 83
Query: 168 RIGFVTQDDVLL------------PQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKE 215
++G V QD+VLL P ++VE+ +++AA K A + E
Sbjct: 84 QVGVVLQDNVLLNRSIIDNISLANPGMSVEK-VIYAA------------KLAGAHDFISE 130
Query: 216 LGLERCRHTRVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQV 275
L R + + +R+R +I ++ +P +L+ D+ TS LD S + +++
Sbjct: 131 L---REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRN 187
Query: 276 LQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFSSL 328
+ K+ K GRTVI H+ S+ D+++++ +G V GK +E + SL
Sbjct: 188 MHKICK-GRTVIIIAHRLST--VKNADRIIVMEKGKIVEQGKHKELLSEPESL 237
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 111/224 (49%), Gaps = 24/224 (10%)
Query: 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDI---PYNPALK 166
ILKG++ S+ PG+ LAL+GPSG GK+T++ ++ R D + G I + NP
Sbjct: 1093 EILKGLSFSVEPGQTLALVGPSGCGKSTVVALL-ERFYDTLGGEIFIDGSEIKTLNPEHT 1151
Query: 167 R-RIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQ-----KYARVQMILKEL--GL 218
R +I V+Q+ L ++ E +++ P ++ Q + A + + EL G
Sbjct: 1152 RSQIAIVSQEPTLF-DCSIAENIIYGLD---PSSVTMAQVEEAARLANIHNFIAELPEGF 1207
Query: 219 ERCRHTRVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQK 278
E TRV +++R +I ++ +P +LLLDE TS LD T + K++Q
Sbjct: 1208 E----TRV-GDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALD-TESEKVVQEALD 1261
Query: 279 VAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322
A+ GRT I H+ ++ M D + ++S G + G + M
Sbjct: 1262 RAREGRTCIVIAHRLNTVMNA--DCIAVVSNGTIIEKGTHTQLM 1303
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 99/216 (45%), Gaps = 12/216 (5%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPA----LK 166
IL+G+ + G+ +AL+G SG GK+T++ ++ R D +KG IT + + L+
Sbjct: 433 ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLL-RYYDVLKGKITIDGVDVRDINLEFLR 491
Query: 167 RRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRV 226
+ + V+Q+ L T+EE + M K A + +K L + +
Sbjct: 492 KNVAVVSQEPALF-NCTIEENISLGKEGITREEMVAACKMANAEKFIKTL---PNGYNTL 547
Query: 227 XXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTV 286
+++R +I ++ +P +LLLDE TS LD+ S + Q L K AK GRT
Sbjct: 548 VGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK-GRTT 606
Query: 287 ITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322
I H+ S+ D ++ G V G R M
Sbjct: 607 IIIAHRLST--IRNADLIISCKNGQVVEVGDHRALM 640
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 104/222 (46%), Gaps = 13/222 (5%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITY---NDIPYNPAL 165
K ILKGI+ I GEI L+GP+G+GKTT L+I+ L G +T N + +
Sbjct: 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIIS-TLIKPSSGIVTVFGKNVVEEPHEV 86
Query: 166 KRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTR 225
++ I ++ ++ + E L F A + ++ R I GL R
Sbjct: 87 RKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIA---GLGEKIKDR 143
Query: 226 VXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRT 285
V ++ I ++V+P L +LDEPTSGLD +A ++ ++L++ ++ G T
Sbjct: 144 VSTYSKGMV-----RKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLT 198
Query: 286 VITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFSS 327
++ + H F + D++ LI G V G E E + +
Sbjct: 199 ILVSSHNMLEVEF-LCDRIALIHNGTIVETGTVEELKERYKA 239
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 107/216 (49%), Gaps = 14/216 (6%)
Query: 107 DYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKG--NITYNDIPY--N 162
D + L+ ++ ++ PG+ LAL+GPSG+GK+T+L+++ R D G I DI
Sbjct: 65 DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLL-FRFYDISSGCIRIDGQDISQVTQ 123
Query: 163 PALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKE-LGLERC 221
+L+ IG V QD VL T+ + + + R+ + + A+ I +
Sbjct: 124 ASLRSHIGVVPQDTVLFND-TIADNIRYG---RVTAGNDEVEAAAQAAGIHDAIMAFPEG 179
Query: 222 RHTRVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK 281
T+V E++R +I IL P ++LLDE TS LD+++ + L KV
Sbjct: 180 YRTQV-GERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC- 237
Query: 282 AGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGK 317
A RT I H+ S+ + D++L+I +G V G+
Sbjct: 238 ANRTTIVVAHRLSTVV--NADQILVIKDGCIVERGR 271
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 104/210 (49%), Gaps = 21/210 (10%)
Query: 118 SICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN--DIPYNPALKRRIGFVTQD 175
+I GE L L+GPSG GKTT L+++ G L + +G I + D+ Y P R I V Q
Sbjct: 34 TIKDGEFLVLLGPSGCGKTTTLRMIAG-LEEPTEGRIYFGDRDVTYLPPKDRNISMVFQS 92
Query: 176 DVLLPQLTVEETLVFAAFL-RLPGN-MNRQQKYARVQMILKELGLERCRHTRVXXXXXXX 233
+ P +TV E + F + + P + ++++ ++A + ++EL L R
Sbjct: 93 YAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEEL-LNRY---------PAQ 142
Query: 234 XXXXERKRTSIGYEILVDPSLLLLDEPTSGLDS---TSANKLIQVLQKVAKAGRTVITTI 290
+R+R ++ I+V+P +LL+DEP S LD+ + I+ LQ+ K T I
Sbjct: 143 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKV--TTIYVT 200
Query: 291 HQPSSRMFHMFDKLLLISEGYPVYYGKARE 320
H M M D++ +++ G + G E
Sbjct: 201 HDQVEAM-TMGDRIAVMNRGQLLQIGSPTE 229
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 104/210 (49%), Gaps = 21/210 (10%)
Query: 118 SICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN--DIPYNPALKRRIGFVTQD 175
+I GE L L+GPSG GKTT L+++ G L + +G I + D+ Y P R I V Q
Sbjct: 33 TIKDGEFLVLLGPSGCGKTTTLRMIAG-LEEPTEGRIYFGDRDVTYLPPKDRNISMVFQS 91
Query: 176 DVLLPQLTVEETLVFAAFL-RLPGN-MNRQQKYARVQMILKELGLERCRHTRVXXXXXXX 233
+ P +TV E + F + + P + ++++ ++A + ++EL L R
Sbjct: 92 YAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEEL-LNRY---------PAQ 141
Query: 234 XXXXERKRTSIGYEILVDPSLLLLDEPTSGLDS---TSANKLIQVLQKVAKAGRTVITTI 290
+R+R ++ I+V+P +LL+DEP S LD+ + I+ LQ+ K T I
Sbjct: 142 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKV--TTIYVT 199
Query: 291 HQPSSRMFHMFDKLLLISEGYPVYYGKARE 320
H M M D++ +++ G + G E
Sbjct: 200 HDQVEAM-TMGDRIAVMNRGQLLQIGSPTE 228
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 111/241 (46%), Gaps = 17/241 (7%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN--PALKRRI 169
+ G++ + GE +AL+GPSG GKTT L ++ G + G I ++D+ N P R +
Sbjct: 19 VDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAG-IYKPTSGEIYFDDVLVNDIPPKYREV 77
Query: 170 GFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVXXX 229
G V Q+ L P +TV E + F R +++ + RV I ++L ++ +
Sbjct: 78 GMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRK---- 130
Query: 230 XXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDST---SANKLIQVLQKVAKAGRTV 286
+++R ++ ++ P +LL DEP S LD+ I+ LQ+ + G T
Sbjct: 131 -PTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQ--ELGITS 187
Query: 287 ITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFSSLGFIPEIAMNPAEFLLDLA 346
+ H + M M ++ + ++G V YG E + ++ I P FL D +
Sbjct: 188 VYVTHDQAEAM-TMASRIAVFNQGKLVQYGTPDEVYDSPKNMFVASFIGNPPTNFLRDFS 246
Query: 347 T 347
Sbjct: 247 V 247
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 108/221 (48%), Gaps = 13/221 (5%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN-DIPYNPALKR 167
K L+ ++ I GE L + G +GSGK+TLL+IV G L + G++ Y+ + ++R
Sbjct: 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAG-LIEPTSGDVLYDGERKKGYEIRR 78
Query: 168 RIGFVTQ--DDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTR 225
IG Q +D + +E + FA P + V+ ++ +GL+
Sbjct: 79 NIGIAFQYPEDQFFAERVFDE-VAFAVKNFYPD----RDPVPLVKKAMEFVGLD---FDS 130
Query: 226 VXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRT 285
E++R +I I+ +P +L+LDEP GLD L+++++K G+T
Sbjct: 131 FKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKT 190
Query: 286 VITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFS 326
VI H + + H+ D+++++ +G V+ G E +E +
Sbjct: 191 VILISHDIETVINHV-DRVVVLEKGKKVFDGTRMEFLEKYD 230
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 108/221 (48%), Gaps = 13/221 (5%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN-DIPYNPALKR 167
K L+ ++ I GE L + G +GSGK+TLL+IV G L + G++ Y+ + ++R
Sbjct: 22 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAG-LIEPTSGDVLYDGERKKGYEIRR 80
Query: 168 RIGFVTQ--DDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTR 225
IG Q +D + +E + FA P + V+ ++ +GL+
Sbjct: 81 NIGIAFQYPEDQFFAERVFDE-VAFAVKNFYPD----RDPVPLVKKAMEFVGLD---FDS 132
Query: 226 VXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRT 285
E++R +I I+ +P +L+LDEP GLD L+++++K G+T
Sbjct: 133 FKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKT 192
Query: 286 VITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFS 326
VI H + + H+ D+++++ +G V+ G E +E +
Sbjct: 193 VILISHDIETVINHV-DRVVVLEKGKKVFDGTRMEFLEKYD 232
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 118/237 (49%), Gaps = 34/237 (14%)
Query: 107 DYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGG-RLTDDVKGNITYNDIPY-NPA 164
D IL I SI GE++ ++G SGSGK+TL K++ + ++ + I +D+ +P
Sbjct: 14 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPN 73
Query: 165 -LKRRIGFVTQDDVLL------------PQLTVEETLVFAAFLRLPGNMNRQQKYARVQM 211
L+R++G V QD+VLL P ++VE+ +++AA K A
Sbjct: 74 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEK-VIYAA------------KLAGAHD 120
Query: 212 ILKELGLERCRHTRVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANK 271
+ EL R + + +R+R +I ++ +P +L+ DE TS LD S +
Sbjct: 121 FISEL---REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 177
Query: 272 LIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFSSL 328
+++ + K+ K GRTVI + S+ D+++++ +G V GK +E + SL
Sbjct: 178 IMRNMHKICK-GRTVIIIAARLST--VKNADRIIVMEKGKIVEQGKHKELLSEPESL 231
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 118/237 (49%), Gaps = 34/237 (14%)
Query: 107 DYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGG-RLTDDVKGNITYNDIPY-NPA 164
D IL I SI GE++ ++G SGSGK+TL K++ + ++ + I +D+ +P
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPN 79
Query: 165 -LKRRIGFVTQDDVLL------------PQLTVEETLVFAAFLRLPGNMNRQQKYARVQM 211
L+R++G V QD+VLL P ++VE+ +++AA K A
Sbjct: 80 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEK-VIYAA------------KLAGAHD 126
Query: 212 ILKELGLERCRHTRVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANK 271
+ EL R + + +R+R +I ++ +P +L+ DE TS LD S +
Sbjct: 127 FISEL---REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 183
Query: 272 LIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFSSL 328
+++ + K+ K GRTVI + S+ D+++++ +G V GK +E + SL
Sbjct: 184 IMRNMHKICK-GRTVIIIAARLST--VKNADRIIVMEKGKIVEQGKHKELLSEPESL 237
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 104/221 (47%), Gaps = 17/221 (7%)
Query: 107 DYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPY-NPAL 165
D + IL+ I+ P I+A GPSG GK+T+ ++ R G IT + P N +L
Sbjct: 13 DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLE-RFYQPTAGEITIDGQPIDNISL 71
Query: 166 ---KRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCR 222
+ +IGFV+QD ++ T+ E L + L G+ + + + + +E
Sbjct: 72 ENWRSQIGFVSQDSAIMAG-TIRENLTYG----LEGDYTDEDLWQVLDLAFARSFVENMP 126
Query: 223 ---HTRVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKV 279
+T V +R+R +I L +P +L+LDE T+ LDS S + + + L +
Sbjct: 127 DQLNTEVGERGVKISGG-QRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSL 185
Query: 280 AKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARE 320
K GRT + H+ S+ + DK+ I +G GK E
Sbjct: 186 MK-GRTTLVIAHRLSTIVDA--DKIYFIEKGQITGSGKHNE 223
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 104/232 (44%), Gaps = 41/232 (17%)
Query: 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN--DIPYNPAL-- 165
H +KGI + G+I+ L+G +G+GKTT L + G L KG I +N DI PA
Sbjct: 20 HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAG-LVRAQKGKIIFNGQDITNKPAHVI 78
Query: 166 -KRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQK-------------YARVQM 211
+ I V + + P+LTV E L A+ NR+ K + R++
Sbjct: 79 NRXGIALVPEGRRIFPELTVYENLXXGAY-------NRKDKEGIKRDLEWIFSLFPRLKE 131
Query: 212 ILKELGLERCRHTRVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANK 271
LK+LG E++ +IG + P LL DEP+ GL ++
Sbjct: 132 RLKQLG--------------GTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSE 177
Query: 272 LIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESME 323
+ +V+QK+ + G T++ + Q + + ++ G V GKA E ++
Sbjct: 178 VFEVIQKINQEGTTIL-LVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 108/218 (49%), Gaps = 12/218 (5%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPA----LK 166
+L G+ S+ PG ++A++G +GSGK+TL+ ++ RL D +G + +++ L+
Sbjct: 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLI-PRLIDPERGRVEVDELDVRTVKLKDLR 416
Query: 167 RRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRV 226
I V Q+ VL T++E L + + K A++ + + L +RV
Sbjct: 417 GHISAVPQETVLFSG-TIKENLKWGREDATDDEIVEAAKIAQIHDFI--ISLPEGYDSRV 473
Query: 227 XXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTV 286
+++R SI ++ P +L+LD+ TS +D + +++ L++ K T
Sbjct: 474 -ERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTF 532
Query: 287 ITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEY 324
I T P++ + DK+L++ EG +G +E +E+
Sbjct: 533 IITQKIPTA---LLADKILVLHEGKVAGFGTHKELLEH 567
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 108/217 (49%), Gaps = 15/217 (6%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN--DI-PYNPA-LK 166
I + + SI G + AL+GPSGSGK+T+L ++ RL D G I+ + DI NP L+
Sbjct: 359 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLL-LRLYDPASGTISLDGHDIRQLNPVWLR 417
Query: 167 RRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC---RH 223
+IG V+Q+ +L ++ E + + A P ++ ++ RV + + R
Sbjct: 418 SKIGTVSQEPILF-SCSIAENIAYGA--DDPSSVTAEE-IQRVAEVANAVAFIRNFPQGF 473
Query: 224 TRVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAG 283
V +++R +I +L +P +LLLDE TS LD+ + + + L ++ G
Sbjct: 474 NTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-G 532
Query: 284 RTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARE 320
RTV+ H+ S+ + + ++ +G YGK E
Sbjct: 533 RTVLVIAHRLST--IKNANMVAVLDQGKITEYGKHEE 567
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 104/210 (49%), Gaps = 15/210 (7%)
Query: 118 SICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN--DI-PYNPA-LKRRIGFVT 173
SI G + AL+GPSGSGK+T+L ++ RL D G I+ + DI NP L+ +IG V+
Sbjct: 397 SIPSGSVTALVGPSGSGKSTVLSLL-LRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVS 455
Query: 174 QDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC---RHTRVXXXX 230
Q+ +L ++ E + + A P ++ ++ RV + + R V
Sbjct: 456 QEPILF-SCSIAENIAYGA--DDPSSVTAEE-IQRVAEVANAVAFIRNFPQGFNTVVGEK 511
Query: 231 XXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTI 290
+++R +I +L +P +LLLDE TS LD+ + + + L ++ GRTV+
Sbjct: 512 GVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIA 570
Query: 291 HQPSSRMFHMFDKLLLISEGYPVYYGKARE 320
H S+ + + ++ +G YGK E
Sbjct: 571 HHLST--IKNANMVAVLDQGKITEYGKHEE 598
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 108/227 (47%), Gaps = 21/227 (9%)
Query: 103 SLDKDYKHI-LKGITGSICPGEILALMGPSGSGKTTLLKIVGG-RLTDDVKGNITYNDIP 160
SL + +K+ L ++ + GE ++GP+G+GKT L+++ G + D + + D+
Sbjct: 6 SLSRKWKNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVT 65
Query: 161 YNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER 220
K I FV Q+ L P + V++ L F M + + RV ++L +E
Sbjct: 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGM------RMKKIKDPKRVLDTARDLKIEH 119
Query: 221 CRHTRVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLD---STSANKLIQVLQ 277
+ E++R ++ ++ +P +LLLDEP S LD +A +++ VL
Sbjct: 120 -----LLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLH 174
Query: 278 KVAKAGRTVITTIH-QPSSRMFHMFDKLLLISEGYPVYYGKARESME 323
K K TV+ H Q +R+ M D++ ++ +G + GK E E
Sbjct: 175 KKNKL--TVLHITHDQTEARI--MADRIAVVMDGKLIQVGKPEEIFE 217
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 88/190 (46%), Gaps = 18/190 (9%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYND----IP----YNP 163
+K ++ I GE L L+GPSG GKTT L+ + G L + +G I D P + P
Sbjct: 22 VKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAG-LEEPTRGQIYIEDNLVADPEKGVFVP 80
Query: 164 ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRH 223
+R + V Q L P TV + + F LR + +Q+ RV+ + + LGL
Sbjct: 81 PKERDVAXVFQSYALYPHXTVYDNIAFPLKLR---KVPKQEIDKRVREVAEXLGL----- 132
Query: 224 TRVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA- 282
T + +R+R ++G I+ P + L DEP S LD+ K L+K+ +
Sbjct: 133 TELLNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQL 192
Query: 283 GRTVITTIHQ 292
G T I H
Sbjct: 193 GVTTIYVTHD 202
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 104/214 (48%), Gaps = 12/214 (5%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN--DIP--YNPALK 166
ILK I SI GE +A +G SG GK+TL+ ++ R D G I + +I +L+
Sbjct: 356 ILKDINLSIEKGETVAFVGMSGGGKSTLINLI-PRFYDVTSGQILIDGHNIKDFLTGSLR 414
Query: 167 RRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRV 226
+IG V QD++L TV+E ++ + K A + + L + T V
Sbjct: 415 NQIGLVQQDNILFSD-TVKENILLGRPTATDEEVVEAAKMANAHDFI--MNLPQGYDTEV 471
Query: 227 XXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTV 286
+++R SI L +P +L+LDE TS LD S + + + L ++K RT
Sbjct: 472 -GERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK-DRTT 529
Query: 287 ITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARE 320
+ H+ S+ + H DK+++I G+ V G RE
Sbjct: 530 LIVAHRLST-ITHA-DKIVVIENGHIVETGTHRE 561
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 108/231 (46%), Gaps = 25/231 (10%)
Query: 103 SLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPY- 161
S DK K +LK IT I PG+ +AL+GP+GSGKTT++ ++ R D +G I + I
Sbjct: 363 SYDKK-KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLL-MRFYDVDRGQILVDGIDIR 420
Query: 162 ---NPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYA----RVQMILK 214
+L+ IG V QD +L TV+E L + PG + + K A +K
Sbjct: 421 KIKRSSLRSSIGIVLQDTILFST-TVKENLKYGN----PGATDEEIKEAAKLTHSDHFIK 475
Query: 215 EL--GLERCRHTRVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKL 272
L G E V +R+ +I L +P +L+LDE TS +D T K
Sbjct: 476 HLPEGYE-----TVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVD-TKTEKS 529
Query: 273 IQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESME 323
IQ G+T I H+ ++ D ++++ +G V GK E ++
Sbjct: 530 IQAAMWKLMEGKTSIIIAHRLNT--IKNADLIIVLRDGEIVEMGKHDELIQ 578
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 98/196 (50%), Gaps = 13/196 (6%)
Query: 127 LMGPSGSGKTTLLKIVGGRLTDDVKGNITYN--DIPYNPALKRRIGFVTQDDVLLPQLTV 184
L+GP+G+GK+ L+++ G + D +G + N DI P +R IGFV QD L P L+V
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPD-RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSV 87
Query: 185 EETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVXXXXXXXXXXXERKRTSI 244
+ + LR N+ R ++ RV+ + ++LG+ + ER+R ++
Sbjct: 88 YRNIAYG--LR---NVERVERDRRVREMAEKLGI-----AHLLDRKPARLSGGERQRVAL 137
Query: 245 GYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKL 304
+++ P LLLLDEP S +D + L++ L+ V + I + + D++
Sbjct: 138 ARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEV 197
Query: 305 LLISEGYPVYYGKARE 320
++ G V GK +E
Sbjct: 198 AVMLNGRIVEKGKLKE 213
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 110/226 (48%), Gaps = 18/226 (7%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPA----LK 166
+L+G++ + G+ LAL+G SG GK+T+++++ R D + G++ + L+
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLE-RFYDPMAGSVFLDGKEIKQLNVQWLR 1106
Query: 167 RRIGFVTQDDVLLPQLTVEETLVFAAFLRLPG--NMNRQQKYARVQMILKELGLERCRHT 224
++G V+Q+ +L ++ E + + R+ + R K A + + L +T
Sbjct: 1107 AQLGIVSQEPILF-DCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSL--PDKYNT 1163
Query: 225 RVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGR 284
RV +++R +I ++ P +LLLDE TS LD T + K++Q A+ GR
Sbjct: 1164 RVGDKGTQLSGG-QKQRIAIARALVRQPHILLLDEATSALD-TESEKVVQEALDKAREGR 1221
Query: 285 TVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESME----YFS 326
T I H+ S+ D +++I G +G ++ + YFS
Sbjct: 1222 TCIVIAHRLST--IQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFS 1265
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 101/212 (47%), Gaps = 20/212 (9%)
Query: 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN-------DIPYN 162
ILKG+ + G+ +AL+G SG GK+T ++++ RL D + G ++ + ++ Y
Sbjct: 404 QILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQ-RLYDPLDGMVSIDGQDIRTINVRY- 461
Query: 163 PALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCR 222
L+ IG V+Q+ VL T+ E + + + + K A + +L +
Sbjct: 462 --LREIIGVVSQEPVLFAT-TIAENIRYGREDVTMDEIEKAVKEANAYDFIMKL---PHQ 515
Query: 223 HTRVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA 282
+ +++R +I ++ +P +LLLDE TS LD T + ++Q A+
Sbjct: 516 FDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALD-TESEAVVQAALDKARE 574
Query: 283 GRTVITTIHQPSS----RMFHMFDKLLLISEG 310
GRT I H+ S+ + FD +++ +G
Sbjct: 575 GRTTIVIAHRLSTVRNADVIAGFDGGVIVEQG 606
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 110/226 (48%), Gaps = 18/226 (7%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPA----LK 166
+L+G++ + G+ LAL+G SG GK+T+++++ R D + G++ + L+
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLE-RFYDPMAGSVFLDGKEIKQLNVQWLR 1106
Query: 167 RRIGFVTQDDVLLPQLTVEETLVFAAFLRLPG--NMNRQQKYARVQMILKELGLERCRHT 224
++G V+Q+ +L ++ E + + R+ + R K A + + L +T
Sbjct: 1107 AQLGIVSQEPILF-DCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSL--PDKYNT 1163
Query: 225 RVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGR 284
RV +++R +I ++ P +LLLDE TS LD T + K++Q A+ GR
Sbjct: 1164 RVGDKGTQLSGG-QKQRIAIARALVRQPHILLLDEATSALD-TESEKVVQEALDKAREGR 1221
Query: 285 TVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESME----YFS 326
T I H+ S+ D +++I G +G ++ + YFS
Sbjct: 1222 TCIVIAHRLST--IQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFS 1265
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 101/212 (47%), Gaps = 20/212 (9%)
Query: 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN-------DIPYN 162
ILKG+ + G+ +AL+G SG GK+T ++++ RL D + G ++ + ++ Y
Sbjct: 404 QILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQ-RLYDPLDGMVSIDGQDIRTINVRY- 461
Query: 163 PALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCR 222
L+ IG V+Q+ VL T+ E + + + + K A + +L +
Sbjct: 462 --LREIIGVVSQEPVLFAT-TIAENIRYGREDVTMDEIEKAVKEANAYDFIMKL---PHQ 515
Query: 223 HTRVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA 282
+ +++R +I ++ +P +LLLDE TS LD T + ++Q A+
Sbjct: 516 FDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALD-TESEAVVQAALDKARE 574
Query: 283 GRTVITTIHQPSS----RMFHMFDKLLLISEG 310
GRT I H+ S+ + FD +++ +G
Sbjct: 575 GRTTIVIAHRLSTVRNADVIAGFDGGVIVEQG 606
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 85/169 (50%), Gaps = 15/169 (8%)
Query: 104 LDKDYKH--ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD-----VKGNITY 156
L K +++ +L I+ S+ PGEIL ++G SG GKTTLL+ + G D + G +
Sbjct: 10 LSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIF 69
Query: 157 NDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKEL 216
+ P +RR+G++ Q+ VL P LTV + + G Q+ R++ +L+
Sbjct: 70 SKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLG---NGKGRTAQERQRIEAMLELT 126
Query: 217 GLERCRHTRVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLD 265
G+ + + +++R ++ + DP L+LLDEP S LD
Sbjct: 127 GI-----SELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALD 170
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 104/220 (47%), Gaps = 25/220 (11%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN--DI-PYN-PA 164
K L ++ SI G+ +AL+G SGSGK+T+ + R D G+I + D+ Y
Sbjct: 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFT-RFYDVDSGSICLDGHDVRDYKLTN 414
Query: 165 LKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQ-----KYARVQMILKEL--G 217
L+R V+Q+ V L T+ + +AA G R+Q + A ++ + G
Sbjct: 415 LRRHFALVSQN-VHLFNDTIANNIAYAA----EGEYTREQIEQAARQAHAMEFIENMPQG 469
Query: 218 LERCRHTRVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQ 277
L+ V +R+R +I +L D +L+LDE TS LD+ S + L
Sbjct: 470 LDT-----VIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALD 524
Query: 278 KVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGK 317
++ K +TV+ H+ S+ D++L++ EG + G+
Sbjct: 525 ELQK-NKTVLVIAHRLST--IEQADEILVVDEGEIIERGR 561
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 53/192 (27%), Positives = 96/192 (50%), Gaps = 22/192 (11%)
Query: 102 LSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPY 161
LS+ D K +L+ IT +I G ++ GP+G GKTTLLK + L +KG I YN +P
Sbjct: 16 LSVGYD-KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK-PLKGEIIYNGVPI 73
Query: 162 NPALKRRIGFVTQDDVLLPQLTVEETL-VFAAFLRLPGNMNR---QQKYARVQMILKELG 217
+K +I F+ ++ ++ +++VE+ L A+ + N N + V + K+LG
Sbjct: 74 T-KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLG 132
Query: 218 LERCRHTRVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQ 277
E + T +R + +LV+ + +LD+P +D S +K+++ +
Sbjct: 133 -ELSQGT--------------IRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSIL 177
Query: 278 KVAKAGRTVITT 289
++ K VI +
Sbjct: 178 EILKEKGIVIIS 189
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 102/220 (46%), Gaps = 38/220 (17%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIG 170
+LK I I G++LA+ G +G+GKT+LL ++ G L + +G I ++ RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL-EPSEGKIKHSG---------RIS 102
Query: 171 FVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC------RHT 224
F +Q+ ++P T++E ++ ++ +Y R + ++K LE +
Sbjct: 103 FCSQNSWIMPG-TIKENIIGVSY----------DEY-RYRSVIKACQLEEDISKFAEKDN 150
Query: 225 RVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQ--VLQKVAKA 282
V +R R S+ + D L LLD P LD + ++ + V + +A
Sbjct: 151 IVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANK 210
Query: 283 GRTVITTIHQPSSRMFHM--FDKLLLISEGYPVYYGKARE 320
R ++T S+M H+ DK+L++ EG +YG E
Sbjct: 211 TRILVT------SKMEHLKKADKILILHEGSSYFYGTFSE 244
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 102/220 (46%), Gaps = 38/220 (17%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIG 170
+LK I I G++LA+ G +G+GKT+LL ++ G L + +G I ++ RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL-EPSEGKIKHSG---------RIS 102
Query: 171 FVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC------RHT 224
F +Q+ ++P T++E ++ ++ +Y R + ++K LE +
Sbjct: 103 FCSQNSWIMPG-TIKENIIGVSY----------DEY-RYRSVIKACQLEEDISKFAEKDN 150
Query: 225 RVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQ--VLQKVAKA 282
V +R R S+ + D L LLD P LD + ++ + V + +A
Sbjct: 151 IVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANK 210
Query: 283 GRTVITTIHQPSSRMFHM--FDKLLLISEGYPVYYGKARE 320
R ++T S+M H+ DK+L++ EG +YG E
Sbjct: 211 TRILVT------SKMEHLKKADKILILHEGSSYFYGTFSE 244
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 101/214 (47%), Gaps = 25/214 (11%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIG 170
+LK I +I GE+LA+ G +GSGKT+LL ++ G L + +G I ++ R+
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGEL-EASEGIIKHSG---------RVS 102
Query: 171 FVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVXXXX 230
F +Q ++P T++E ++F + + R + + + +++ + V
Sbjct: 103 FCSQFSWIMPG-TIKENIIFG----VSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEG 157
Query: 231 XXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQ--VLQKVAKAGRTVIT 288
+R R S+ + D L LLD P LD + ++ + V + +A R ++T
Sbjct: 158 GVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVT 217
Query: 289 TIHQPSSRMFHM--FDKLLLISEGYPVYYGKARE 320
S+M H+ DK+L++ +G +YG E
Sbjct: 218 ------SKMEHLRKADKILILHQGSSYFYGTFSE 245
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 101/214 (47%), Gaps = 25/214 (11%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIG 170
+LK I +I GE+LA+ G +GSGKT+LL ++ G L + +G I ++ R+
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGEL-EASEGIIKHSG---------RVS 102
Query: 171 FVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVXXXX 230
F +Q ++P T++E ++F + + R + + + +++ + V
Sbjct: 103 FCSQFSWIMPG-TIKENIIFG----VSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEG 157
Query: 231 XXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQ--VLQKVAKAGRTVIT 288
+R R S+ + D L LLD P LD + ++ + V + +A R ++T
Sbjct: 158 GVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVT 217
Query: 289 TIHQPSSRMFHM--FDKLLLISEGYPVYYGKARE 320
S+M H+ DK+L++ +G +YG E
Sbjct: 218 ------SKMEHLRKADKILILHQGSSYFYGTFSE 245
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 100/220 (45%), Gaps = 37/220 (16%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIG 170
+LK I I G++LA+ G +G+GKT+LL ++ G L + +G I ++ RI
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL-EPSEGKIKHSG---------RIS 84
Query: 171 FVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC------RHT 224
F +Q ++P T++E ++F +Y R + ++K LE +
Sbjct: 85 FCSQFSWIMPG-TIKENIIFGV---------SYDEY-RYRSVIKACQLEEDISKFAEKDN 133
Query: 225 RVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQ--VLQKVAKA 282
V +R R S+ + D L LLD P LD + ++ + V + +A
Sbjct: 134 IVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANK 193
Query: 283 GRTVITTIHQPSSRMFHM--FDKLLLISEGYPVYYGKARE 320
R ++T S+M H+ DK+L++ EG +YG E
Sbjct: 194 TRILVT------SKMEHLKKADKILILHEGSSYFYGTFSE 227
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 100/220 (45%), Gaps = 37/220 (16%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIG 170
+LK I I G++LA+ G +G+GKT+LL ++ G L + +G I ++ RI
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL-EPSEGKIKHSG---------RIS 72
Query: 171 FVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC------RHT 224
F +Q ++P T++E ++F +Y R + ++K LE +
Sbjct: 73 FCSQFSWIMPG-TIKENIIFGV---------SYDEY-RYRSVIKACQLEEDISKFAEKDN 121
Query: 225 RVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQ--VLQKVAKA 282
V +R R S+ + D L LLD P LD + ++ + V + +A
Sbjct: 122 IVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANK 181
Query: 283 GRTVITTIHQPSSRMFHM--FDKLLLISEGYPVYYGKARE 320
R ++T S+M H+ DK+L++ EG +YG E
Sbjct: 182 TRILVT------SKMEHLKKADKILILHEGSSYFYGTFSE 215
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 81/165 (49%), Gaps = 9/165 (5%)
Query: 107 DYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDV-KGNITY---NDIPYN 162
D + ILKG+ + GE+ ALMGP+G+GK+TL KI+ G V +G I N + +
Sbjct: 14 DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELS 73
Query: 163 PALKRRIG--FVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER 220
P + R G Q V +P +T+ L A +L + + + +V+ L+ L +
Sbjct: 74 PDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDE 133
Query: 221 CRHTRVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLD 265
+R E+KR I ++++P+ +LDE SGLD
Sbjct: 134 SYLSR---YLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLD 175
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 101/214 (47%), Gaps = 26/214 (12%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIG 170
+LK I +I GE+LA+ G +GSGKT+LL ++ G L + +G I ++ R+
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGEL-EASEGIIKHSG---------RVS 102
Query: 171 FVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVXXXX 230
F +Q ++P T++E ++ ++ + R + + + +++ + V
Sbjct: 103 FCSQFSWIMPG-TIKENIIGVSY-----DEYRYKSVVKACQLQQDITKFAEQDNTVLGEG 156
Query: 231 XXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQ--VLQKVAKAGRTVIT 288
+R R S+ + D L LLD P LD + ++ + V + +A R ++T
Sbjct: 157 GVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVT 216
Query: 289 TIHQPSSRMFHM--FDKLLLISEGYPVYYGKARE 320
S+M H+ DK+L++ +G +YG E
Sbjct: 217 ------SKMEHLRKADKILILHQGSSYFYGTFSE 244
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 100/214 (46%), Gaps = 26/214 (12%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIG 170
+LK I I G++LA+ G +G+GKT+LL ++ G L + +G I ++ RI
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL-EPSEGKIKHSG---------RIS 72
Query: 171 FVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVXXXX 230
F +Q ++P T++E ++ ++ + R + + + +++ + V
Sbjct: 73 FCSQFSWIMPG-TIKENIIGVSY-----DEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 126
Query: 231 XXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQ--VLQKVAKAGRTVIT 288
+R R S+ + D L LLD P LD + ++ + V + +A R ++T
Sbjct: 127 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 186
Query: 289 TIHQPSSRMFHM--FDKLLLISEGYPVYYGKARE 320
S+M H+ DK+L++ EG +YG E
Sbjct: 187 ------SKMEHLKKADKILILHEGSSYFYGTFSE 214
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 108/230 (46%), Gaps = 37/230 (16%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN--DI-PYNPA-LKR 167
L+ I I G+ +AL+G SGSGK+T+ ++ R D +G I + D+ Y A L+
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLIT-RFYDIDEGEILMDGHDLREYTLASLRN 417
Query: 168 RIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQM------------ILK- 214
++ V+Q+ V L TV + +A R ++Y+R Q+ I K
Sbjct: 418 QVALVSQN-VHLFNDTVANNIAYA----------RTEQYSREQIEEAARMAYAMDFINKM 466
Query: 215 ELGLERCRHTRVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQ 274
+ GL+ V +R+R +I +L D +L+LDE TS LD+ S +
Sbjct: 467 DNGLDT-----VIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQA 521
Query: 275 VLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEY 324
L ++ K RT + H+ S+ D+++++ +G V G + +E+
Sbjct: 522 ALDELQK-NRTSLVIAHRLST--IEKADEIVVVEDGVIVERGTHNDLLEH 568
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 100/214 (46%), Gaps = 25/214 (11%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIG 170
+LK I +I GE+LA+ G +GSGKT+LL ++ G L + +G I ++ R+
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGEL-EASEGIIKHSG---------RVS 102
Query: 171 FVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVXXXX 230
F +Q ++P T++E ++ + + R + + + +++ + V
Sbjct: 103 FCSQFSWIMPG-TIKENIISG----VSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEG 157
Query: 231 XXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQ--VLQKVAKAGRTVIT 288
+R R S+ + D L LLD P LD + ++ + V + +A R ++T
Sbjct: 158 GVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVT 217
Query: 289 TIHQPSSRMFHM--FDKLLLISEGYPVYYGKARE 320
S+M H+ DK+L++ +G +YG E
Sbjct: 218 ------SKMEHLRKADKILILHQGSSYFYGTFSE 245
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 101/222 (45%), Gaps = 12/222 (5%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYND---IPYNPALKRR 168
L G++ S+C G++ ++GP+GSGK+TL+ ++ G L D +G + + + PA
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKAD-EGRVYFENKDITNKEPAELYH 81
Query: 169 IGFVT--QDDVLLPQLTVEETLVFAAFLRLPGNMN----RQQKYARVQMILKELG-LERC 221
G V Q L ++TV E L+ +N ++ +M+ K LE
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 222 RHTRVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK 281
+ + + + K IG ++ +P ++++DEP +G+ A+ + + ++
Sbjct: 142 KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA 201
Query: 282 AGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESME 323
G T + H+ + + D L ++ G + G+ E ++
Sbjct: 202 KGITFLIIEHR-LDIVLNYIDHLYVMFNGQIIAEGRGEEEIK 242
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 100/214 (46%), Gaps = 25/214 (11%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIG 170
+LK I +I GE+LA+ G +GSGKT+LL ++ G L + +G I ++ R+
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGEL-EASEGIIKHSG---------RVS 102
Query: 171 FVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVXXXX 230
F +Q ++P T++E ++ + + R + + + +++ + V
Sbjct: 103 FCSQFSWIMPG-TIKENIIRG----VSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEG 157
Query: 231 XXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQ--VLQKVAKAGRTVIT 288
+R R S+ + D L LLD P LD + ++ + V + +A R ++T
Sbjct: 158 GVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVT 217
Query: 289 TIHQPSSRMFHM--FDKLLLISEGYPVYYGKARE 320
S+M H+ DK+L++ +G +YG E
Sbjct: 218 ------SKMEHLRKADKILILHQGSSYFYGTFSE 245
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 96/198 (48%), Gaps = 22/198 (11%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLK-------------IVGGR---LTDDVKGNI 154
+LKG++ G++++++G SGSGK+T L+ IV G+ L D G +
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQL 80
Query: 155 TYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILK 214
D L+ R+ V Q L +TV E ++ A L +++ R L
Sbjct: 81 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKHDARERALKYLA 138
Query: 215 ELGLERCRHTRVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQ 274
++G++ R +++R SI + ++P +LL DEPTS LD ++++
Sbjct: 139 KVGIDE----RAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLR 194
Query: 275 VLQKVAKAGRTVITTIHQ 292
++Q++A+ G+T++ H+
Sbjct: 195 IMQQLAEEGKTMVVVTHE 212
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 100/220 (45%), Gaps = 37/220 (16%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIG 170
+LK I I G++LA+ G +G+GKT+LL ++ G L + +G I ++ RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL-EPSEGKIKHSG---------RIS 102
Query: 171 FVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC------RHT 224
F +Q ++P T++E ++F +Y R + ++K LE +
Sbjct: 103 FCSQFSWIMPG-TIKENIIFGV---------SYDEY-RYRSVIKACQLEEDISKFAEKDN 151
Query: 225 RVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQ--VLQKVAKA 282
V ++ + S+ + D L LLD P LD + ++ + V + +A
Sbjct: 152 IVLGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANK 211
Query: 283 GRTVITTIHQPSSRMFHM--FDKLLLISEGYPVYYGKARE 320
R ++T S+M H+ DK+L++ EG +YG E
Sbjct: 212 TRILVT------SKMEHLKKADKILILHEGSSYFYGTFSE 245
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 99/220 (45%), Gaps = 37/220 (16%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIG 170
+LK I I G++LA+ G +G+GKT+LL ++ G L + +G I ++ RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL-EPSEGKIKHSG---------RIS 102
Query: 171 FVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC------RHT 224
F +Q ++P T++E ++ +Y R + ++K LE +
Sbjct: 103 FCSQFSWIMPG-TIKENIIAGV---------SYDEY-RYRSVIKACQLEEDISKFAEKDN 151
Query: 225 RVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQ--VLQKVAKA 282
V +R R S+ + D L LLD P LD + ++ + V + +A
Sbjct: 152 IVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANK 211
Query: 283 GRTVITTIHQPSSRMFHM--FDKLLLISEGYPVYYGKARE 320
R ++T S+M H+ DK+L++ EG +YG E
Sbjct: 212 TRILVT------SKMEHLKKADKILILHEGSSYFYGTFSE 245
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 106/226 (46%), Gaps = 37/226 (16%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN--DI-PYNPA-LKR 167
L+ I I G+ +AL+G SGSGK+T+ ++ R D +G+I + D+ Y A L+
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLIT-RFYDIDEGHILMDGHDLREYTLASLRN 417
Query: 168 RIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQM------------ILK- 214
++ V+Q+ V L TV + +A R ++Y+R Q+ I K
Sbjct: 418 QVALVSQN-VHLFNDTVANNIAYA----------RTEEYSREQIEEAARMAYAMDFINKM 466
Query: 215 ELGLERCRHTRVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQ 274
+ GL+ + +R+R +I +L D +L+LDE TS LD+ S +
Sbjct: 467 DNGLDT-----IIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQA 521
Query: 275 VLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARE 320
L ++ K RT + H+ S+ D+++++ +G V G E
Sbjct: 522 ALDELQK-NRTSLVIAHRLST--IEQADEIVVVEDGIIVERGTHSE 564
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 84/204 (41%), Gaps = 35/204 (17%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRR 168
K IL+G++ + PGE+ A+MGP+GSGK+TL + GR +V G
Sbjct: 14 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGT-------------- 59
Query: 169 IGFVTQDDVLLPQLTVEETLVFAAF---LRLPGNMNR---------------QQKYARV- 209
+ F +D + L +F AF + +PG N+ Q+ R
Sbjct: 60 VEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFD 119
Query: 210 --QMILKELGLERCRHTRVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDST 267
++ +++ L + + E+KR I +++P L +LDE SGLD
Sbjct: 120 FQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDID 179
Query: 268 SANKLIQVLQKVAKAGRTVITTIH 291
+ + + + R+ I H
Sbjct: 180 ALKVVADGVNSLRDGKRSFIIVTH 203
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 84/204 (41%), Gaps = 35/204 (17%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRR 168
K IL+G++ + PGE+ A+MGP+GSGK+TL + GR +V G
Sbjct: 33 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGT-------------- 78
Query: 169 IGFVTQDDVLLPQLTVEETLVFAAF---LRLPGNMNR---------------QQKYARV- 209
+ F +D + L +F AF + +PG N+ Q+ R
Sbjct: 79 VEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFD 138
Query: 210 --QMILKELGLERCRHTRVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDST 267
++ +++ L + + E+KR I +++P L +LDE SGLD
Sbjct: 139 FQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDID 198
Query: 268 SANKLIQVLQKVAKAGRTVITTIH 291
+ + + + R+ I H
Sbjct: 199 ALKVVADGVNSLRDGKRSFIIVTH 222
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 102/213 (47%), Gaps = 13/213 (6%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD---DVK-GNITYNDIPYNPALKR 167
LK I I G AL+G +GSGK+T+ K++ R D D+K G N N +++
Sbjct: 36 LKSINFFIPSGTTCALVGHTGSGKSTIAKLLY-RFYDAEGDIKIGGKNVNKYNRN-SIRS 93
Query: 168 RIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVX 227
IG V QD +L + T++ +++ + + K A++ ++ L + +
Sbjct: 94 IIGIVPQDTILFNE-TIKYNILYGKLDATDEEVIKATKSAQLYDFIEAL---PKKWDTIV 149
Query: 228 XXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVI 287
ER+R +I +L DP +++ DE TS LDS + + ++ + K RT+I
Sbjct: 150 GNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLI 208
Query: 288 TTIHQPSSRMFHMFDKLLLISEGYPVYYGKARE 320
H+ S+ + ++L+++G V G ++
Sbjct: 209 IIAHRLST--ISSAESIILLNKGKIVEKGTHKD 239
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 101/220 (45%), Gaps = 38/220 (17%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIG 170
+LK I I G++LA+ G +G+GKT+LL ++ G L + +G I ++ RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL-EPSEGKIKHSG---------RIS 102
Query: 171 FVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC------RHT 224
F +Q ++P T++E ++ ++ +Y R + ++K LE +
Sbjct: 103 FCSQFSWIMPG-TIKENIIGVSY----------DEY-RYRSVIKACQLEEDISKFAEKDN 150
Query: 225 RVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQ--VLQKVAKA 282
V ++ + S+ + D L LLD P LD + ++ + V + +A
Sbjct: 151 IVLGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANK 210
Query: 283 GRTVITTIHQPSSRMFHM--FDKLLLISEGYPVYYGKARE 320
R ++T S+M H+ DK+L++ EG +YG E
Sbjct: 211 TRILVT------SKMEHLKKADKILILHEGSSYFYGTFSE 244
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 98/216 (45%), Gaps = 23/216 (10%)
Query: 122 GEILALMGPSGSGKTTLLKIVGGRLTDDVKGNI-TYNDIPYNPAL-KRRIGFVTQDDVLL 179
G+ILA++G +G GK+TLL ++ G + ++G I Y I + P + D VL+
Sbjct: 31 GDILAVLGQNGCGKSTLLDLLLG-IHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLM 89
Query: 180 PQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVXXXXXXXXXXXER 239
+ T T FA P + Y L L L T + +R
Sbjct: 90 GRSTHINT--FAK----P----KSHDYQVAMQALDYLNL-----THLAKREFTSLSGGQR 134
Query: 240 KRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMF 298
+ I I + L+LLDEPTS LD + + ++ +L +A++ TV+ T HQP+ +
Sbjct: 135 QLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVA 194
Query: 299 HMFDKLLLISEGYPVYYGKARE--SMEYFSSLGFIP 332
LLL + + +G+ R + E ++L +P
Sbjct: 195 IANKTLLLNKQNFK--FGETRNILTSENLTALFHLP 228
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 48/222 (21%), Positives = 100/222 (45%), Gaps = 12/222 (5%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYND---IPYNPALKRR 168
L G++ S+ G++ ++GP+GSGK+TL+ ++ G L D +G + + + PA
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD-EGRVYFENKDITNKEPAELYH 81
Query: 169 IGFVT--QDDVLLPQLTVEETLVFAAFLRLPGNMN----RQQKYARVQMILKELG-LERC 221
G V Q L ++TV E L+ +N ++ +M+ K LE
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 222 RHTRVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK 281
+ + + + K IG ++ +P ++++DEP +G+ A+ + + ++
Sbjct: 142 KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA 201
Query: 282 AGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESME 323
G T + H+ + + D L ++ G + G+ E ++
Sbjct: 202 KGITFLIIEHR-LDIVLNYIDHLYVMFNGQIIAEGRGEEEIK 242
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 98/227 (43%), Gaps = 11/227 (4%)
Query: 99 ASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGN---IT 155
AS L + ++ ++ I GE++A++GP+G+GK+TLL+++ G L+ G +
Sbjct: 14 ASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS-HGECHLLG 72
Query: 156 YNDIPYNP-ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLP-GNMNRQQKYARVQMIL 213
N + P AL R + Q L +V E + R P G +Q +V
Sbjct: 73 QNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMG---RAPYGGSQDRQALQQVMAQT 129
Query: 214 KELGLERCRHTRVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLI 273
L L + R RV R + ++ P L LDEPTS LD +
Sbjct: 130 DCLALAQ-RDYRVLSGGEQQRVQLARVLAQL-WQPQPTPRWLFLDEPTSALDLYHQQHTL 187
Query: 274 QVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARE 320
++L+++ + + + + D+++L+++G V G E
Sbjct: 188 RLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEE 234
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 104/231 (45%), Gaps = 35/231 (15%)
Query: 110 HILKGITGSICPGEILALMGPSGSGKTT-------LLKIVGGRLTDDVKGNITYNDIPYN 162
+L+G+T ++ PG++ AL+GP+GSGK+T L + GG++ D + + Y D Y
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQY-DHHY- 90
Query: 163 PALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKE------- 215
L ++ V Q+ +L + + E + + + R + + E
Sbjct: 91 --LHTQVAAVGQEPLLFGR-SFRENIAYG--------LTRTPTMEEITAVAMESGAHDFI 139
Query: 216 LGLERCRHTRVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQV 275
G + T V +R+ ++ ++ P LL+LD+ TS LD+ + ++ ++
Sbjct: 140 SGFPQGYDTEV-GETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRL 198
Query: 276 LQKVAK-AGRTVITTIHQPS--SRMFHMFDKLLLISEGYPVYYGKARESME 323
L + + A RTV+ HQ S R H +L + EG G + ME
Sbjct: 199 LYESPEWASRTVLLITHQLSLAERAHH----ILFLKEGSVCEQGTHLQLME 245
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/222 (21%), Positives = 100/222 (45%), Gaps = 12/222 (5%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYND---IPYNPALKRR 168
L G++ S+ G++ ++GP+GSGK+TL+ ++ G L D +G + + + PA
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD-EGRVYFENKDITNKEPAELYH 81
Query: 169 IGFVT--QDDVLLPQLTVEETLVFAAFLRLPGNMN----RQQKYARVQMILKELG-LERC 221
G V Q L ++TV E L+ +N ++ +M+ K LE
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 222 RHTRVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK 281
+ + + + K IG ++ +P ++++D+P +G+ A+ + + ++
Sbjct: 142 KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELKA 201
Query: 282 AGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESME 323
G T + H+ + + D L ++ G + G+ E ++
Sbjct: 202 KGITFLIIEHR-LDIVLNYIDHLYVMFNGQIIAEGRGEEEIK 242
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 108/252 (42%), Gaps = 26/252 (10%)
Query: 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHI-LKGITGSICPGEILAL 127
+LK E+V ++ K V+ + + L KDY L+ G I GE++ +
Sbjct: 258 YLKDENVRFRPYEIKFTKTGERVEIERETLVTYPRLVKDYGSFRLEVEPGEIKKGEVIGI 317
Query: 128 MGPSGSGKTTLLKIVGGRLTDDVKGNITYN-DIPYNPALKRRIGFVTQDDVLLPQLTVEE 186
+GP+G GKTT +K + G + + +G I ++ + Y P ++ D + TV E
Sbjct: 318 VGPNGIGKTTFVKXLAG-VEEPTEGKIEWDLTVAYKPQ------YIKAD----YEGTVYE 366
Query: 187 TLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVXXXXXXXXXXXERKRTSIGY 246
L +L N + + +LK LG+ V E +R +I
Sbjct: 367 LLSKIDASKLNSNFYKTE-------LLKPLGIIDLYDREV-----NELSGGELQRVAIAA 414
Query: 247 EILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLL 306
+L D + LLDEP++ LD + + ++ + + + + ++ D+L +
Sbjct: 415 TLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEHDVLXIDYVSDRLXV 474
Query: 307 ISEGYPVYYGKA 318
EG P YG+A
Sbjct: 475 F-EGEPGKYGRA 485
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 95/210 (45%), Gaps = 26/210 (12%)
Query: 119 ICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQD--- 175
+ G ++ ++GP+G+GK+T +KI+ G+L ++ G+ ND ++ ++ G Q+
Sbjct: 44 VKEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGD---ND-SWDGVIRAFRGNELQNYFE 99
Query: 176 --------DVLLPQ-LTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRV 226
V+ PQ + + V + L + + + +++ ++K L LE +
Sbjct: 100 KLKNGEIRPVVKPQYVDLIPKAVKGKVIEL---LKKADETGKLEEVVKALELENVLEREI 156
Query: 227 XXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTV 286
E +R +I +L + + DEP+S LD + ++++++ G++V
Sbjct: 157 -----QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSV 211
Query: 287 ITTIHQPSSRMFHMFDKLLLISEGYPVYYG 316
+ H + + ++ + G P YG
Sbjct: 212 LVVEHDLA--VLDYLSDIIHVVYGEPGVYG 239
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 121/274 (44%), Gaps = 39/274 (14%)
Query: 69 FLKFEDVE---YKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHI-LKGITGSICPGEI 124
+LK E+V Y++R K + + + + + L KDY L+ G I GE+
Sbjct: 328 YLKDENVRFRPYEIRFTKLSERVDVERETLVEYPR---LVKDYGSFKLEVEPGEIRKGEV 384
Query: 125 LALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN-DIPYNPALKRRIGFVTQDDVLLPQLT 183
+ ++GP+G GKTT +K++ G + + +G + ++ + Y P ++ + + T
Sbjct: 385 IGIVGPNGIGKTTFVKMLAG-VEEPTEGKVEWDLTVAYKPQ------YIKAE----YEGT 433
Query: 184 VEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVXXXXXXXXXXXERKRTS 243
V E L +L N + + +LK LG+ + E +R +
Sbjct: 434 VYELLSKIDSSKLNSNFYKTE-------LLKPLGI-----IDLYDRNVEDLSGGELQRVA 481
Query: 244 IGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDK 303
I +L D + LLDEP++ LD + + ++ + + + + ++ D+
Sbjct: 482 IAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDR 541
Query: 304 LLLISEGYPVYYGKA------RESMEYF-SSLGF 330
L++ EG P +G+A RE M F +S+G
Sbjct: 542 LIVF-EGEPGRHGRALPPMGMREGMNRFLASVGI 574
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 238 ERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRM 297
E +R +I +L DEP+S LD K+ +V++++A G+ V+ H + +
Sbjct: 233 ELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLA--V 290
Query: 298 FHMFDKLLLISEGYPVYYG 316
++ + G P YG
Sbjct: 291 LDYLSDVIHVVYGEPGVYG 309
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 121/274 (44%), Gaps = 39/274 (14%)
Query: 69 FLKFEDVE---YKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHI-LKGITGSICPGEI 124
+LK E+V Y++R K + + + + + L KDY L+ G I GE+
Sbjct: 314 YLKDENVRFRPYEIRFTKLSERVDVERETLVEYPR---LVKDYGSFKLEVEPGEIRKGEV 370
Query: 125 LALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN-DIPYNPALKRRIGFVTQDDVLLPQLT 183
+ ++GP+G GKTT +K++ G + + +G + ++ + Y P ++ + + T
Sbjct: 371 IGIVGPNGIGKTTFVKMLAG-VEEPTEGKVEWDLTVAYKPQ------YIKAE----YEGT 419
Query: 184 VEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVXXXXXXXXXXXERKRTS 243
V E L +L N + + +LK LG+ + E +R +
Sbjct: 420 VYELLSKIDSSKLNSNFYKTE-------LLKPLGI-----IDLYDRNVEDLSGGELQRVA 467
Query: 244 IGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDK 303
I +L D + LLDEP++ LD + + ++ + + + + ++ D+
Sbjct: 468 IAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDR 527
Query: 304 LLLISEGYPVYYGKA------RESMEYF-SSLGF 330
L++ EG P +G+A RE M F +S+G
Sbjct: 528 LIVF-EGEPGRHGRALPPMGMREGMNRFLASVGI 560
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 238 ERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRM 297
E +R +I +L DEP+S LD K+ +V++++A G+ V+ H + +
Sbjct: 219 ELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLA--V 276
Query: 298 FHMFDKLLLISEGYPVYYG 316
++ + G P YG
Sbjct: 277 LDYLSDVIHVVYGEPGVYG 295
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 87/189 (46%), Gaps = 17/189 (8%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVG-------GRLTDDVKGNITYNDIPYNPA 164
L ++ + G+I ++G SG+GK+TL++ V G + D + T ++ A
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80
Query: 165 LKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHT 224
+R+IG + Q LL TV + L N + + RV +L +GL +H
Sbjct: 81 -RRQIGMIFQHFNLLSSRTVFGNVALPLEL---DNTPKDEVKRRVTELLSLVGLGD-KHD 135
Query: 225 RVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-G 283
+++R +I + +P +LL DE TS LD + ++++L+ + + G
Sbjct: 136 ----SYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLG 191
Query: 284 RTVITTIHQ 292
T++ H+
Sbjct: 192 LTILLITHE 200
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 103/226 (45%), Gaps = 27/226 (11%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTT-------LLKIVGGRLTDDVKGNITYNDIPYNP 163
+L+G+T ++ PGE+ AL+GP+GSGK+T L + GG+L D K Y +
Sbjct: 32 VLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYE----HR 87
Query: 164 ALKRRIGFVTQDDVLLPQL---TVEETLVFAAFLRLPGNMNRQQKYARVQMILKEL--GL 218
L R++ V Q+ PQ+ +++E + + + + A V+ GL
Sbjct: 88 YLHRQVAAVGQE----PQVFGRSLQENIAYGLTQK---PTMEEITAAAVKSGAHSFISGL 140
Query: 219 ERCRHTRVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVL-Q 277
+ T V +R+ ++ ++ P +L+LD+ TS LD+ S ++ Q+L +
Sbjct: 141 PQGYDTEV-DEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYE 199
Query: 278 KVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESME 323
+ R+V+ S + D +L + G G ++ ME
Sbjct: 200 SPERYSRSVLLITQHLS--LVEQADHILFLEGGAIREGGTHQQLME 243
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 102/231 (44%), Gaps = 35/231 (15%)
Query: 110 HILKGITGSICPGEILALMGPSGSGKTT-------LLKIVGGRLTDDVKGNITYNDIPYN 162
+L+G+T ++ PG++ AL+GP+GSGK+T L + GG++ D + + Y D Y
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQY-DHHY- 90
Query: 163 PALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKE------- 215
L ++ V Q+ +L + + E + + + R + + E
Sbjct: 91 --LHTQVAAVGQEPLLFGR-SFRENIAYG--------LTRTPTMEEITAVAMESGAHDFI 139
Query: 216 LGLERCRHTRVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQV 275
G + T V +R+ ++ ++ P LL+LD TS LD+ + ++ ++
Sbjct: 140 SGFPQGYDTEV-GETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRL 198
Query: 276 LQKVAK-AGRTVITTIHQPS--SRMFHMFDKLLLISEGYPVYYGKARESME 323
L + + A RTV+ Q S R H +L + EG G + ME
Sbjct: 199 LYESPEWASRTVLLITQQLSLAERAHH----ILFLKEGSVCEQGTHLQLME 245
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 102/231 (44%), Gaps = 35/231 (15%)
Query: 110 HILKGITGSICPGEILALMGPSGSGKTT-------LLKIVGGRLTDDVKGNITYNDIPYN 162
+L+G+T ++ PG++ AL+GP+GSGK+T L + GG++ D + + Y D Y
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQY-DHHY- 90
Query: 163 PALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKE------- 215
L ++ V Q+ +L + + E + + + R + + E
Sbjct: 91 --LHTQVAAVGQEPLLFGR-SFRENIAYG--------LTRTPTMEEITAVAMESGAHDFI 139
Query: 216 LGLERCRHTRVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQV 275
G + T V +R+ ++ ++ P LL+LD TS LD+ + ++ ++
Sbjct: 140 SGFPQGYDTEV-GETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRL 198
Query: 276 LQKVAK-AGRTVITTIHQPS--SRMFHMFDKLLLISEGYPVYYGKARESME 323
L + + A RTV+ Q S R H +L + EG G + ME
Sbjct: 199 LYESPEWASRTVLLITQQLSLAERAHH----ILFLKEGSVCEQGTHLQLME 245
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 87/189 (46%), Gaps = 17/189 (8%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVG-------GRLTDDVKGNITYNDIPYNPA 164
L ++ + G+I ++G SG+GK+TL++ V G + D + T ++ A
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 165 LKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHT 224
+R+IG + Q LL TV + L N + + RV +L +GL +H
Sbjct: 104 -RRQIGMIFQHFNLLSSRTVFGNVALPLEL---DNTPKDEVKRRVTELLSLVGLGD-KHD 158
Query: 225 RVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-G 283
+++R +I + +P +LL D+ TS LD + ++++L+ + + G
Sbjct: 159 ----SYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLG 214
Query: 284 RTVITTIHQ 292
T++ H+
Sbjct: 215 LTILLITHE 223
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 95/207 (45%), Gaps = 18/207 (8%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVG-------GRLTDDVKGNITYNDIPYNPA 164
L ++ + G+I ++G SG+GK+TL++ V G + D + T ++ A
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 165 LKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHT 224
+R+IG + Q LL TV + L N + + RV +L +GL +H
Sbjct: 104 -RRQIGXIFQHFNLLSSRTVFGNVALPLEL---DNTPKDEVKRRVTELLSLVGLGD-KHD 158
Query: 225 RVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-G 283
+++R +I + +P +LL D+ TS LD + ++++L+ + + G
Sbjct: 159 ----SYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLG 214
Query: 284 RTVITTIHQPSSRMFHMFDKLLLISEG 310
T++ H+ + + D + +IS G
Sbjct: 215 LTILLITHE-XDVVKRICDCVAVISNG 240
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 98/242 (40%), Gaps = 33/242 (13%)
Query: 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPAL----K 166
IL+ I+ SI PG+ + L+G +GSGK+TLL L + +G I + + ++ +
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL--NTEGEIQIDGVSWDSITLEQWR 93
Query: 167 RRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC----- 221
+ G + Q + +F+ R + N + + E+GL
Sbjct: 94 KAFGVIPQ-----------KVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFP 142
Query: 222 -RHTRVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVA 280
+ V ++ + +L +LLLDEP++ LD + ++I+ K A
Sbjct: 143 GKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTY-QIIRRTLKQA 201
Query: 281 KAGRTVITTIHQPSSRMFHMF--DKLLLISEGYPVYYGKARESMEYFSS---LGFIPEIA 335
A TVI +R+ M D+ L+I E Y E Y + GFI
Sbjct: 202 FADCTVILC----EARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVAGFIGSPK 257
Query: 336 MN 337
MN
Sbjct: 258 MN 259
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 74/179 (41%), Gaps = 25/179 (13%)
Query: 101 QLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGG---------RLTDDVK 151
Q+ K K ILK I+ I G+ L G +G+GKTTLL I+ L
Sbjct: 26 QIGRXKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXP 85
Query: 152 GNITYNDIPYNPALKRRIGFVTQDDVLLPQLT----VEETLVFAAFLRLPGNMNRQQKY- 206
G + Y+ +++ IGFV+ LL + V + ++ AF + + +
Sbjct: 86 GKVGYS----AETVRQHIGFVSHS--LLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIR 139
Query: 207 ARVQMILKELGLERCRHTRVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLD 265
+LK +G + E++R I + P +L+LDEP +GLD
Sbjct: 140 NEAHQLLKLVGXSAKAQQYIGYLSTG-----EKQRVXIARALXGQPQVLILDEPAAGLD 193
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 91/215 (42%), Gaps = 23/215 (10%)
Query: 115 ITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQ 174
++G + GEIL L+GP+G+GK+TLL G + KG+I + P ++
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG--KGSIQFAGQPLEAWSATKLALHR- 75
Query: 175 DDVLLPQLTVEETLVFAA----FLRLPGNMNRQQKYARVQMILKELGLERCRHTRVXXXX 230
L+ ++T FA +L L Q R +++ G
Sbjct: 76 -----AYLSQQQTPPFATPVWHYLTL-----HQHDKTRTELLNDVAGALALDDKLGRSTN 125
Query: 231 XXXXXXXERKR-TSIGYEIL--VDPS--LLLLDEPTSGLDSTSANKLIQVLQKVAKAGRT 285
+R R ++ +I +P+ LLLLDEP + LD + L ++L +++ G
Sbjct: 126 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALSQQGLA 185
Query: 286 VITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARE 320
++ + H + + H + L+ G + G+ E
Sbjct: 186 IVXSSHDLNHTLRHAH-RAWLLKGGKXLASGRREE 219
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 90/215 (41%), Gaps = 23/215 (10%)
Query: 115 ITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQ 174
++G + GEIL L+GP+G+GK+TLL G + KG+I + P ++
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG--KGSIQFAGQPLEAWSATKLALHR- 75
Query: 175 DDVLLPQLTVEETLVFAA----FLRLPGNMNRQQKYARVQMILKELGLERCRHTRVXXXX 230
L+ ++T FA +L L Q R +++ G
Sbjct: 76 -----AYLSQQQTPPFATPVWHYLTL-----HQHDKTRTELLNDVAGALALDDKLGRSTN 125
Query: 231 XXXXXXXERKR-TSIGYEIL--VDPS--LLLLDEPTSGLDSTSANKLIQVLQKVAKAGRT 285
+R R ++ +I +P+ LLLLDEP + LD + L ++L + + G
Sbjct: 126 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQQGLA 185
Query: 286 VITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARE 320
++ + H + + H + L+ G + G+ E
Sbjct: 186 IVXSSHDLNHTLRHAH-RAWLLKGGKXLASGRREE 219
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 86/201 (42%), Gaps = 22/201 (10%)
Query: 115 ITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQ 174
++G + GEIL L+GP+G+GK+TLL + G + KG+I + P ++
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG--KGSIQFAGQPLEAWSATKLALHR- 75
Query: 175 DDVLLPQLTVEETLVFAA----FLRLPGNMNRQQKYARVQMILKELGLERCRHTRVXXXX 230
L+ ++T FA +L L Q R +++ G
Sbjct: 76 -----AYLSQQQTPPFATPVWHYLTL-----HQHDKTRTELLNDVAGALALDDKLGRSTN 125
Query: 231 XXXXXXXERKR-TSIGYEIL--VDPS--LLLLDEPTSGLDSTSANKLIQVLQKVAKAGRT 285
+R R ++ +I +P+ LLLLD+P + LD + L ++L +++ G
Sbjct: 126 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALSQQGLA 185
Query: 286 VITTIHQPSSRMFHMFDKLLL 306
++ + H + + H LL
Sbjct: 186 IVMSSHDLNHTLRHAHRAWLL 206
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 95/221 (42%), Gaps = 27/221 (12%)
Query: 114 GITGSICPGEILALMGPSGSGKTTLL-----------KIVGGRLTDDVKGNITYNDIPYN 162
GI+ I + A++G S SGK+T++ +I+ GR+ K +T +
Sbjct: 26 GISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELR 85
Query: 163 PALKRRIGFVTQ--DDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER 220
+ I V Q L P + V E F + G +++ ++I E E+
Sbjct: 86 KIRWKEIALVPQAAQQSLNPTMKVIEH--FKDTVEAHG-----VRWSHSELI--EKASEK 136
Query: 221 CRHTRVXXXXXXXXXXXE-----RKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQV 275
R R+ + ++R I +L+DP +L+LDEPTS LD + +IQ+
Sbjct: 137 LRMVRLNPEAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQL 196
Query: 276 LQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYG 316
L+++ K + + + + + DK+ +I G V Y
Sbjct: 197 LKELKKMLKITLIFVTHDIAVAAELADKVAVIYGGNLVEYN 237
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 92/233 (39%), Gaps = 32/233 (13%)
Query: 121 PGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIP---------YNPALKRRIGF 171
PG++L L+G +G GK+T LKI+ G+ ++ ++D P L+
Sbjct: 102 PGQVLGLVGTNGIGKSTALKILAGKQKPNLG---RFDDPPEWQEIIKYFRGSELQNYFTK 158
Query: 172 VTQDD---VLLPQLTVEETLVFAAFLRLPGNMNR---QQKYARVQMILKELGLERCRHTR 225
+ +DD ++ PQ ++ G + + ++ V+ +K L LE
Sbjct: 159 MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLE-----N 213
Query: 226 VXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRT 285
V E +R +IG + + + + DEP+S LD Q+++ + +
Sbjct: 214 VLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKY 273
Query: 286 VITTIHQPSSRMFHMFDKLLLISEGYPVYYG------KARESMEYFSSLGFIP 332
VI H S + + I G P YG RE + F G IP
Sbjct: 274 VICVEHDLS--VLDYLSDFVCIIYGVPSVYGVVTLPASVREGINIFLD-GHIP 323
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Query: 70 LKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDY-KHILKGITGSICPGEILALM 128
L+F + RI A D S+ S SL K +L G EIL +M
Sbjct: 327 LRFRTEALQFRIADATEDLQ--NDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMM 384
Query: 129 GPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP 163
G +G+GKTTL+K++ G L D +I ++ P
Sbjct: 385 GENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKP 419
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 85/201 (42%), Gaps = 22/201 (10%)
Query: 115 ITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQ 174
++G + GEIL L+GP+G+GK+TLL + G + KG+I + P ++
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG--KGSIQFAGQPLEAWSATKLALHR- 75
Query: 175 DDVLLPQLTVEETLVFAA----FLRLPGNMNRQQKYARVQMILKELGLERCRHTRVXXXX 230
L+ ++T FA +L L Q R +++ G
Sbjct: 76 -----AYLSQQQTPPFATPVWHYLTL-----HQHDKTRTELLNDVAGALALDDKLGRSTN 125
Query: 231 XXXXXXXERKR-TSIGYEIL--VDPS--LLLLDEPTSGLDSTSANKLIQVLQKVAKAGRT 285
+R R ++ +I +P+ LLLLD+P LD + L ++L +++ G
Sbjct: 126 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSALSQQGLA 185
Query: 286 VITTIHQPSSRMFHMFDKLLL 306
++ + H + + H LL
Sbjct: 186 IVMSSHDLNHTLRHAHRAWLL 206
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 15/73 (20%)
Query: 97 KVASQLSLDKDYK------HILKGI--------TGSICPGEILALMGPSGSGKTTLLKIV 142
K S L L KD K I+K + G GEI+ ++GP+G GKTT +I+
Sbjct: 255 KEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARIL 314
Query: 143 GGRLTDDVKGNIT 155
G +T D +G++T
Sbjct: 315 VGEITAD-EGSVT 326
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 124 ILALMGPSGSGKTTLLKIVGGRL 146
IL ++G +G GKTT+LKI+ G +
Sbjct: 27 ILGVLGKNGVGKTTVLKILAGEI 49
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 40/91 (43%), Gaps = 13/91 (14%)
Query: 253 SLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPS--SRMFHMFDKLLLISEG 310
+L +LDEPT GL KL++VL ++ G TVI H H+ D L EG
Sbjct: 828 TLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIID---LGPEG 884
Query: 311 YPVYYGKARESMEYFSSLGFIPEIAMNPAEF 341
GK Y + G EIA NP +
Sbjct: 885 -----GK---EGGYIVATGTPEEIAKNPHSY 907
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 254 LLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQ 292
+ +LDEPT GL +LI+ L+K+ G TVI H
Sbjct: 487 IYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHD 525
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 69/155 (44%), Gaps = 15/155 (9%)
Query: 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGF 171
L GIT SI G ++A++G G GK++LL + + D V+G++ A+K + +
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEM-DKVEGHV---------AIKGSVAY 70
Query: 172 VTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVXXXXX 231
V Q + ++ E ++F L P + Q A +L +L +
Sbjct: 71 VPQ-QAWIQNDSLRENILFGCQLEEPYYRSVIQACA----LLPDLEILPSGDRTEIGEKG 125
Query: 232 XXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDS 266
+++R S+ + + + L D+P S +D+
Sbjct: 126 VNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDA 160
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 253 SLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQ 292
++ +LDEPT+GL +L + L K+ AG TVI H+
Sbjct: 753 TVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHK 792
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 120 CPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN 157
GE + ++GP+GSGKTTLL+ + G L GNI N
Sbjct: 28 VNGEKVIILGPNGSGKTTLLRAISGLLP--YSGNIFIN 63
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 253 SLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQ 292
+L +LDEPT+GL +L+ VL ++ G TV+ H
Sbjct: 868 TLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHN 907
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 16/93 (17%)
Query: 254 LLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPV 313
L +LDEP+ GL ++LI L+ + G T+I H + + D L+ I G +
Sbjct: 527 LYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML--AADYLIDIGPGAGI 584
Query: 314 YYGKA------RESM--------EYFSSLGFIP 332
+ G+ E M +Y S FIP
Sbjct: 585 HGGEVVAAGTPEEVMNDPNSLTGQYLSGKKFIP 617
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 253 SLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQ 292
+L +LDEPT+GL +L+ VL ++ G TV+ H
Sbjct: 868 TLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHN 907
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 254 LLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPV 313
L +LDEP+ GL ++LI L+ G T+I H + + D L+ I G +
Sbjct: 527 LYVLDEPSIGLHQRDNDRLIATLKSXRDLGNTLIVVEHDEDTXL--AADYLIDIGPGAGI 584
Query: 314 YYGK 317
+ G+
Sbjct: 585 HGGE 588
Score = 28.9 bits (63), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIV 142
+H LK ++ I G +A+ G SGSGK+TL+ V
Sbjct: 637 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEV 670
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 253 SLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQ 292
+L +LDEPT+GL +L+ VL ++ G TV+ H
Sbjct: 566 TLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHN 605
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 16/93 (17%)
Query: 254 LLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPV 313
L +LDEP+ GL ++LI L+ + G T+I H + + D L+ I G +
Sbjct: 225 LYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML--AADYLIDIGPGAGI 282
Query: 314 YYGKA------RESM--------EYFSSLGFIP 332
+ G+ E M +Y S FIP
Sbjct: 283 HGGEVVAAGTPEEVMNDPNSLTGQYLSGKKFIP 315
>pdb|3QKR|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
pdb|3QKS|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
Length = 179
Score = 32.7 bits (73), Expect = 0.77, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 253 SLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIH 291
SLL+LDEPT LD KLI ++++ K VI H
Sbjct: 114 SLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSH 152
>pdb|4A01|A Chain A, Crystal Structure Of The H-Translocating Pyrophosphatase
pdb|4A01|B Chain B, Crystal Structure Of The H-Translocating Pyrophosphatase
Length = 766
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 107 DYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPAL 165
D+ + + ITG G +AL G G G T VG L V+ NI +D P NPA+
Sbjct: 219 DWGGLFEAITGYGLGGSSMALFGRVGGGIYTKAADVGADLVGKVERNIPEDD-PRNPAV 276
>pdb|1YR6|A Chain A, Pab0955 Crystal Structure : A Gtpase In Apo Form From
Pyrococcus Abyssi
pdb|1YR7|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gtp-Gamma-S Bound
Form From Pyrococcus Abyssi
pdb|1YR8|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gtp Bound Form
From Pyrococcus Abyssi
pdb|1YR9|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gdp And Po4 Bound
Form From Pyrococcus Abyssi
pdb|1YRA|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gdp Bound Form
From Pyrococcus Abyssi
pdb|1YRA|B Chain B, Pab0955 Crystal Structure : A Gtpase In Gdp Bound Form
From Pyrococcus Abyssi
pdb|1YRB|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gdp And Mg Bound
Form From Pyrococcus Abyssi
pdb|1YRB|B Chain B, Pab0955 Crystal Structure : A Gtpase In Gdp And Mg Bound
Form From Pyrococcus Abyssi
pdb|2OXR|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gdp And Mg Bound
Form From Pyrococcus Abyssi (After Gtp Hydrolysis)
Length = 262
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 124 ILALMGPSGSGKTTLLKIVGGRLTDD-----VKGNITYNDIPYNPALKRRIGFVTQDDVL 178
I+ +G +GSGKTTL G L D+ V + ++PY P++ R FVT ++++
Sbjct: 16 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVR-EFVTVEEIM 74
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 253 SLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQ 292
++ +LDEPT+GL KL+ V+ + G TVI H
Sbjct: 886 TVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHN 925
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 51/132 (38%), Gaps = 23/132 (17%)
Query: 213 LKELGLERCRHTRVXXXXXXXXXXXERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKL 272
L ++GLE +R R T IG ++ L +LDEP+ GL +L
Sbjct: 505 LLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLV--GVLYVLDEPSIGLHQRDNRRL 562
Query: 273 IQVLQKVAKAGRTVITTIHQPSS-------------------RMFHM--FDKLLLISEGY 311
I+ L ++ G T+I H + R+ H +D+LL +
Sbjct: 563 IETLTRLRDLGNTLIVVEHDEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLRNKDSI 622
Query: 312 PVYYGKARESME 323
Y RES+E
Sbjct: 623 TGAYLSGRESIE 634
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 101 QLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIV 142
QL++ +H L+GI S G + ++ G SGSGK+TL+ +
Sbjct: 647 QLTVVGAREHNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDI 688
>pdb|1F2T|B Chain B, Crystal Structure Of Atp-free Rad50 Abc-atpase
pdb|1F2U|B Chain B, Crystal Structure Of Rad50 Abc-Atpase
pdb|1F2U|D Chain D, Crystal Structure Of Rad50 Abc-Atpase
Length = 148
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 253 SLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQ 292
SLL+LDEPT LD KLI ++++ K VI H
Sbjct: 83 SLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHD 122
>pdb|1US8|B Chain B, The Rad50 Signature Motif: Essential To Atp Binding And
Biological Function
Length = 144
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 253 SLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQ 292
SLL+LDEPT LD KLI ++++ K VI H
Sbjct: 79 SLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHD 118
>pdb|1II8|B Chain B, Crystal Structure Of The P. Furiosus Rad50 Atpase Domain
Length = 174
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 253 SLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIH 291
SLL+LDEPT LD KLI ++++ K VI H
Sbjct: 109 SLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSH 147
>pdb|3QKU|A Chain A, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
pdb|3QKU|B Chain B, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
Length = 359
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 253 SLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQ 292
SLL+LDEPT LD KLI ++++ K VI H
Sbjct: 294 SLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHD 333
>pdb|3QKT|A Chain A, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|B Chain B, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|C Chain C, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|D Chain D, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
Length = 339
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 253 SLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQ 292
SLL+LDEPT LD KLI ++++ K VI H
Sbjct: 274 SLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHD 313
>pdb|3AUX|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|B Chain B, Crystal Structure Of Rad50 Bound To Adp
pdb|3AV0|B Chain B, Crystal Structure Of Mre11-Rad50 Bound To Atp S
Length = 371
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 255 LLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQ 292
++LDEPT LD KL ++ +KV + +I T H+
Sbjct: 309 IILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHR 346
>pdb|3F6K|A Chain A, Crystal Structure Of The Vps10p Domain Of Human
SortilinNTS3 IN Complex With Neurotensin
Length = 685
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
Query: 96 SKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIV-----GGRL--TD 148
SK+ K++K I I + E +GP SGK L V GGR+ +
Sbjct: 65 SKLYRSEDYGKNFKDITDLINNTFIRTEFGMAIGPENSGKVVLTAEVSGGSRGGRIFRSS 124
Query: 149 DVKGNITYNDIPYNP 163
D N D+P++P
Sbjct: 125 DFAKNFVQTDLPFHP 139
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 19/22 (86%)
Query: 125 LALMGPSGSGKTTLLKIVGGRL 146
+A++GP+G+GK+TL+ ++ G L
Sbjct: 696 IAVIGPNGAGKSTLINVLTGEL 717
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 239 RKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQ 292
+ + ++ +L + +LLLDEPT+ LD+ + L+ L G T IT H
Sbjct: 548 KXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLN---TCGITSITISHD 598
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 10/95 (10%)
Query: 125 LALMGPSGSGKTTLLK--IVGGRLTDDVKGNITYNDIPYN--PALKRRIGFVTQDD--VL 178
+ L GP GSGKT ++ + L D V N + + + AL R +VT L
Sbjct: 1051 IILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTL 1110
Query: 179 LPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMIL 213
LP+ ++ ++F + LP + KY ++L
Sbjct: 1111 LPKSDIKNLVLFCDEINLP----KLDKYGSQNVVL 1141
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 10/95 (10%)
Query: 125 LALMGPSGSGKTTLLK--IVGGRLTDDVKGNITYNDIPYN--PALKRRIGFVTQDD--VL 178
+ L GP GSGKT ++ + L D V N + + + AL R +VT L
Sbjct: 1270 IILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTL 1329
Query: 179 LPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMIL 213
LP+ ++ ++F + LP + KY ++L
Sbjct: 1330 LPKSDIKNLVLFCDEINLP----KLDKYGSQNVVL 1360
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 19/22 (86%)
Query: 125 LALMGPSGSGKTTLLKIVGGRL 146
+A++GP+G+GK+TL+ ++ G L
Sbjct: 702 IAVIGPNGAGKSTLINVLTGEL 723
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 239 RKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQ 292
+ + ++ +L + +LLLDEPT+ LD+ + L+ L G T IT H
Sbjct: 554 KXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLN---TCGITSITISHD 604
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 19/22 (86%)
Query: 125 LALMGPSGSGKTTLLKIVGGRL 146
+A++GP+G+GK+TL+ ++ G L
Sbjct: 702 IAVIGPNGAGKSTLINVLTGEL 723
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 239 RKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQ 292
+ + ++ +L + +LLLDEPT+ LD+ + L+ L G T IT H
Sbjct: 554 KMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLN---TCGITSITISHD 604
>pdb|3O1H|B Chain B, Crystal Structure Of The Tors Sensor Domain - Tort Complex
In The Presence Of Tmao
pdb|3O1I|D Chain D, Crystal Structure Of The Tors Sensor Domain - Tort Complex
In The Absence Of Ligand
pdb|3O1I|C Chain C, Crystal Structure Of The Tors Sensor Domain - Tort Complex
In The Absence Of Ligand
pdb|3O1J|C Chain C, Crystal Structure Of The Tors Sensor Domain - Tort Complex
In The Absence Of Isopropanol
pdb|3O1J|D Chain D, Crystal Structure Of The Tors Sensor Domain - Tort Complex
In The Absence Of Isopropanol
Length = 304
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 100 SQLSLDKDYKHILKGITG------SICPGEILALMGPSGSGKTTLLKIVGGRLTDDVK 151
+QL LD++ +LKG G G+ LA P GSGKT + ++G R K
Sbjct: 95 NQLDLDEEQSTLLKGEVGVDWYWMGYEAGKYLAERHPKGSGKTNIALLLGPRTRGGTK 152
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,500,195
Number of Sequences: 62578
Number of extensions: 641423
Number of successful extensions: 2827
Number of sequences better than 100.0: 115
Number of HSP's better than 100.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2569
Number of HSP's gapped (non-prelim): 190
length of query: 674
length of database: 14,973,337
effective HSP length: 105
effective length of query: 569
effective length of database: 8,402,647
effective search space: 4781106143
effective search space used: 4781106143
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)