Query 044602
Match_columns 674
No_of_seqs 563 out of 3658
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 04:56:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044602.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044602hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03211 ABC transporter G-25; 100.0 9E-106 2E-110 927.3 68.9 594 65-668 35-657 (659)
2 KOG0061 Transporter, ABC super 100.0 3E-104 7E-109 906.0 58.2 572 64-673 20-612 (613)
3 TIGR00955 3a01204 The Eye Pigm 100.0 4E-100 8E-105 879.7 61.9 554 107-672 36-616 (617)
4 PLN03140 ABC transporter G fam 100.0 1.4E-96 3E-101 906.2 64.7 571 66-667 864-1464(1470)
5 TIGR00956 3a01205 Pleiotropic 100.0 4.1E-96 9E-101 904.9 62.0 595 66-669 26-694 (1394)
6 PLN03140 ABC transporter G fam 100.0 2E-95 4E-100 896.1 60.0 599 65-669 127-789 (1470)
7 TIGR00956 3a01205 Pleiotropic 100.0 1.1E-93 2.4E-98 883.4 60.2 544 108-671 775-1392(1394)
8 KOG0065 Pleiotropic drug resis 100.0 4.7E-91 1E-95 809.5 36.7 499 107-623 802-1313(1391)
9 KOG0065 Pleiotropic drug resis 100.0 2.5E-86 5.4E-91 770.1 44.1 554 109-668 128-729 (1391)
10 COG1126 GlnQ ABC-type polar am 100.0 2.5E-54 5.5E-59 419.1 25.1 217 69-321 2-223 (240)
11 KOG0058 Peptide exporter, ABC 100.0 8.2E-52 1.8E-56 460.1 20.2 276 16-323 388-691 (716)
12 COG1135 AbcC ABC-type metal io 100.0 7.7E-51 1.7E-55 413.3 23.3 222 69-322 1-230 (339)
13 COG1125 OpuBA ABC-type proline 100.0 8.9E-51 1.9E-55 401.5 22.8 218 69-323 1-225 (309)
14 COG1127 Ttg2A ABC-type transpo 100.0 1.9E-49 4.1E-54 390.7 23.2 220 68-323 7-235 (263)
15 COG1136 SalX ABC-type antimicr 100.0 8.1E-49 1.8E-53 391.1 25.6 209 70-312 2-220 (226)
16 COG1131 CcmA ABC-type multidru 100.0 8.7E-49 1.9E-53 412.6 27.1 211 108-328 17-231 (293)
17 COG1120 FepC ABC-type cobalami 100.0 3E-49 6.4E-54 401.6 22.2 220 69-322 2-227 (258)
18 COG3839 MalK ABC-type sugar tr 100.0 1E-48 2.2E-53 412.0 24.6 218 69-323 3-223 (338)
19 COG3842 PotA ABC-type spermidi 100.0 8.5E-49 1.9E-53 414.6 23.0 233 68-344 4-239 (352)
20 COG3638 ABC-type phosphate/pho 100.0 7.1E-49 1.5E-53 385.6 20.2 224 69-325 3-239 (258)
21 COG1116 TauB ABC-type nitrate/ 100.0 2.2E-48 4.7E-53 388.3 23.2 191 109-310 16-207 (248)
22 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 7.9E-48 1.7E-52 389.2 24.4 218 68-322 3-226 (254)
23 COG2274 SunT ABC-type bacterio 100.0 1.6E-48 3.6E-53 448.8 21.8 276 16-324 393-697 (709)
24 COG2884 FtsE Predicted ATPase 100.0 5E-48 1.1E-52 367.2 20.0 213 69-317 1-220 (223)
25 COG4555 NatA ABC-type Na+ tran 100.0 4.5E-48 9.7E-53 370.4 18.1 205 109-323 15-222 (245)
26 COG1118 CysA ABC-type sulfate/ 100.0 1.5E-47 3.3E-52 388.3 21.0 208 108-323 14-227 (345)
27 COG1117 PstB ABC-type phosphat 100.0 1.2E-47 2.5E-52 371.0 19.1 233 68-342 6-248 (253)
28 TIGR02314 ABC_MetN D-methionin 100.0 1.4E-46 3.1E-51 403.1 28.7 220 70-322 2-229 (343)
29 PRK13537 nodulation ABC transp 100.0 1.8E-46 3.8E-51 398.1 28.4 218 69-323 7-227 (306)
30 PRK11650 ugpC glycerol-3-phosp 100.0 2.8E-46 6E-51 403.6 28.7 218 69-322 3-223 (356)
31 TIGR03265 PhnT2 putative 2-ami 100.0 4.9E-46 1.1E-50 401.3 28.7 218 69-323 4-224 (353)
32 cd03261 ABC_Org_Solvent_Resist 100.0 5.9E-46 1.3E-50 379.9 27.0 204 109-321 13-224 (235)
33 COG1122 CbiO ABC-type cobalt t 100.0 2.9E-46 6.3E-51 379.0 24.2 218 69-323 3-228 (235)
34 PRK11432 fbpC ferric transport 100.0 8E-46 1.7E-50 399.0 28.7 217 69-322 6-225 (351)
35 TIGR03258 PhnT 2-aminoethylpho 100.0 1.3E-45 2.9E-50 398.5 28.6 217 69-322 5-227 (362)
36 PRK13536 nodulation factor exp 100.0 2E-45 4.4E-50 394.5 29.7 221 66-323 38-261 (340)
37 COG1124 DppF ABC-type dipeptid 100.0 6.8E-46 1.5E-50 367.2 22.5 221 69-323 3-231 (252)
38 KOG0057 Mitochondrial Fe/S clu 100.0 1.9E-46 4.1E-51 404.4 19.9 222 67-323 349-574 (591)
39 PRK10851 sulfate/thiosulfate t 100.0 3E-45 6.6E-50 395.1 29.0 220 69-322 2-225 (353)
40 PRK09452 potA putrescine/sperm 100.0 3.3E-45 7.2E-50 396.9 29.1 218 68-322 13-233 (375)
41 TIGR00960 3a0501s02 Type II (G 100.0 2.8E-45 6.2E-50 370.0 25.1 208 70-312 2-216 (216)
42 TIGR01288 nodI ATP-binding ABC 100.0 5.7E-45 1.2E-49 386.5 28.5 218 69-323 4-224 (303)
43 PRK11153 metN DL-methionine tr 100.0 5.9E-45 1.3E-49 392.2 28.8 220 70-322 2-229 (343)
44 cd03265 ABC_DrrA DrrA is the A 100.0 5E-45 1.1E-49 369.4 26.5 203 109-321 13-219 (220)
45 KOG0055 Multidrug/pheromone ex 100.0 2.1E-46 4.6E-51 437.8 18.5 221 66-323 984-1213(1228)
46 COG3840 ThiQ ABC-type thiamine 100.0 1.1E-45 2.3E-50 348.7 19.6 200 113-322 16-218 (231)
47 cd03259 ABC_Carb_Solutes_like 100.0 4.2E-45 9E-50 368.0 25.4 198 109-316 13-213 (213)
48 TIGR01188 drrA daunorubicin re 100.0 3.5E-45 7.6E-50 387.9 26.1 207 108-324 5-214 (302)
49 COG1132 MdlB ABC-type multidru 100.0 7.1E-46 1.5E-50 425.7 22.3 272 18-323 254-552 (567)
50 PRK13643 cbiO cobalt transport 100.0 1.1E-44 2.4E-49 381.5 29.5 237 70-339 2-252 (288)
51 PRK11000 maltose/maltodextrin 100.0 7.5E-45 1.6E-49 394.7 28.8 217 69-322 3-222 (369)
52 cd03219 ABC_Mj1267_LivG_branch 100.0 6.5E-45 1.4E-49 372.2 26.5 207 109-322 13-231 (236)
53 cd03296 ABC_CysA_sulfate_impor 100.0 9.4E-45 2E-49 372.0 27.5 219 69-321 2-224 (239)
54 PRK11607 potG putrescine trans 100.0 9.4E-45 2E-49 394.0 28.9 218 68-322 18-238 (377)
55 KOG0055 Multidrug/pheromone ex 100.0 5.2E-46 1.1E-50 434.5 20.0 226 66-323 347-576 (1228)
56 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 2E-45 4.4E-50 430.7 24.4 263 18-323 377-673 (686)
57 cd03218 ABC_YhbG The ABC trans 100.0 1.2E-44 2.5E-49 369.4 26.5 204 109-322 13-221 (232)
58 PRK13637 cbiO cobalt transport 100.0 2.9E-44 6.4E-49 378.1 30.0 221 70-322 3-233 (287)
59 cd03263 ABC_subfamily_A The AB 100.0 1.1E-44 2.5E-49 366.5 25.8 202 109-321 15-219 (220)
60 cd03269 ABC_putative_ATPase Th 100.0 1.2E-44 2.5E-49 364.0 25.4 198 109-316 13-210 (210)
61 cd03258 ABC_MetN_methionine_tr 100.0 1.5E-44 3.1E-49 369.1 26.4 203 110-322 19-229 (233)
62 cd03293 ABC_NrtD_SsuB_transpor 100.0 1.8E-44 3.9E-49 365.3 26.4 200 109-319 17-219 (220)
63 cd03266 ABC_NatA_sodium_export 100.0 1.5E-44 3.2E-49 365.2 25.7 214 70-316 2-218 (218)
64 PRK11174 cysteine/glutathione 100.0 3.2E-45 6.9E-50 422.2 23.7 216 68-323 348-572 (588)
65 TIGR01186 proV glycine betaine 100.0 1.4E-44 3.1E-49 389.8 26.9 205 108-322 5-218 (363)
66 TIGR03522 GldA_ABC_ATP gliding 100.0 2.5E-44 5.5E-49 381.1 28.1 216 70-323 3-221 (301)
67 PRK13631 cbiO cobalt transport 100.0 4.8E-44 1E-48 381.3 30.3 233 68-333 20-278 (320)
68 PRK13634 cbiO cobalt transport 100.0 3.5E-44 7.6E-49 378.1 28.9 231 70-333 3-248 (290)
69 cd03301 ABC_MalK_N The N-termi 100.0 2E-44 4.2E-49 363.0 25.7 198 109-316 13-213 (213)
70 TIGR03375 type_I_sec_LssB type 100.0 3.5E-45 7.5E-50 429.3 23.1 266 17-324 386-689 (694)
71 cd03256 ABC_PhnC_transporter A 100.0 2.1E-44 4.6E-49 369.4 25.7 207 109-322 14-233 (241)
72 PRK13647 cbiO cobalt transport 100.0 6.4E-44 1.4E-48 373.2 29.4 217 69-321 4-225 (274)
73 PRK11264 putative amino-acid A 100.0 4.6E-44 1E-48 369.2 27.5 218 69-322 3-232 (250)
74 PRK13650 cbiO cobalt transport 100.0 5.4E-44 1.2E-48 374.7 28.4 228 69-331 4-240 (279)
75 PRK11176 lipid transporter ATP 100.0 8E-45 1.7E-49 418.3 24.3 267 18-323 267-567 (582)
76 cd03295 ABC_OpuCA_Osmoprotecti 100.0 4.2E-44 9E-49 367.9 27.0 204 109-322 14-224 (242)
77 PRK09493 glnQ glutamine ABC tr 100.0 5.2E-44 1.1E-48 366.7 27.4 205 109-322 14-224 (240)
78 PRK09536 btuD corrinoid ABC tr 100.0 3.1E-44 6.7E-49 391.7 27.2 220 69-322 3-227 (402)
79 PRK13651 cobalt transporter AT 100.0 8.9E-44 1.9E-48 377.0 29.8 221 69-322 2-253 (305)
80 cd03260 ABC_PstB_phosphate_tra 100.0 2.4E-44 5.2E-49 366.0 24.4 204 109-320 13-226 (227)
81 cd03224 ABC_TM1139_LivF_branch 100.0 3E-44 6.4E-49 363.9 24.9 202 109-322 13-220 (222)
82 cd03294 ABC_Pro_Gly_Bertaine T 100.0 2.5E-44 5.4E-49 375.4 25.0 212 101-322 29-249 (269)
83 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 6.3E-45 1.4E-49 428.3 22.6 263 17-323 394-700 (710)
84 PRK11831 putative ABC transpor 100.0 7.9E-44 1.7E-48 371.6 28.2 218 69-322 7-232 (269)
85 KOG0056 Heavy metal exporter H 100.0 1.2E-45 2.7E-50 389.8 14.2 272 18-323 461-761 (790)
86 cd03234 ABCG_White The White s 100.0 7.6E-44 1.7E-48 362.2 27.0 219 70-316 4-226 (226)
87 TIGR02315 ABC_phnC phosphonate 100.0 3.4E-44 7.3E-49 368.6 24.6 206 109-321 15-233 (243)
88 PRK11629 lolD lipoprotein tran 100.0 1.2E-43 2.6E-48 362.5 28.2 216 69-318 5-229 (233)
89 COG4988 CydD ABC-type transpor 100.0 7E-45 1.5E-49 398.1 20.3 217 65-322 316-542 (559)
90 TIGR00958 3a01208 Conjugate Tr 100.0 7.3E-45 1.6E-49 426.7 21.6 266 17-323 402-702 (711)
91 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 4.6E-44 1E-48 361.6 24.2 193 109-312 17-218 (218)
92 PRK13636 cbiO cobalt transport 100.0 1.7E-43 3.6E-48 371.7 29.4 221 67-323 3-231 (283)
93 cd03268 ABC_BcrA_bacitracin_re 100.0 5.4E-44 1.2E-48 358.6 24.2 194 109-316 13-208 (208)
94 PRK15079 oligopeptide ABC tran 100.0 1.4E-43 3E-48 379.2 28.7 233 68-322 7-250 (331)
95 TIGR02673 FtsE cell division A 100.0 7.6E-44 1.6E-48 359.0 25.2 193 109-311 15-214 (214)
96 PRK13646 cbiO cobalt transport 100.0 1.3E-43 2.8E-48 373.1 28.0 221 69-322 2-234 (286)
97 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 2E-43 4.3E-48 361.6 28.3 203 109-322 14-220 (236)
98 TIGR01193 bacteriocin_ABC ABC- 100.0 1.2E-44 2.7E-49 425.5 21.9 264 17-323 396-697 (708)
99 cd03292 ABC_FtsE_transporter F 100.0 9E-44 2E-48 358.3 25.1 194 109-312 14-214 (214)
100 TIGR01257 rim_protein retinal- 100.0 5.1E-41 1.1E-45 416.7 54.6 223 68-326 927-1152(2272)
101 TIGR00972 3a0107s01c2 phosphat 100.0 2E-43 4.3E-48 364.0 27.8 215 70-322 2-231 (247)
102 PRK10895 lipopolysaccharide AB 100.0 1.3E-43 2.9E-48 363.9 26.4 218 69-322 3-225 (241)
103 PRK11614 livF leucine/isoleuci 100.0 1.3E-43 2.8E-48 363.0 26.1 215 69-322 5-225 (237)
104 PRK10619 histidine/lysine/argi 100.0 2.7E-43 5.9E-48 365.1 28.3 218 69-322 5-240 (257)
105 PRK13635 cbiO cobalt transport 100.0 3.2E-43 6.9E-48 368.8 29.1 218 69-322 5-228 (279)
106 COG1137 YhbG ABC-type (unclass 100.0 4.1E-45 8.9E-50 349.7 13.4 209 107-323 15-228 (243)
107 PRK13641 cbiO cobalt transport 100.0 2.5E-43 5.4E-48 371.1 28.3 221 69-322 2-233 (287)
108 PRK11124 artP arginine transpo 100.0 3E-43 6.5E-48 361.5 27.7 216 69-321 2-228 (242)
109 PRK10790 putative multidrug tr 100.0 5.6E-44 1.2E-48 412.1 24.8 213 68-322 339-562 (592)
110 cd03264 ABC_drug_resistance_li 100.0 1.4E-43 3E-48 356.4 24.2 196 109-316 13-211 (211)
111 PRK14268 phosphate ABC transpo 100.0 4E-43 8.6E-48 364.1 28.2 216 68-321 11-240 (258)
112 COG0411 LivG ABC-type branched 100.0 4.3E-44 9.4E-49 354.7 19.8 209 107-322 15-238 (250)
113 PRK09473 oppD oligopeptide tra 100.0 4.4E-43 9.5E-48 375.4 28.9 227 68-322 11-250 (330)
114 PRK13638 cbiO cobalt transport 100.0 4.5E-43 9.8E-48 366.3 28.3 216 70-322 2-224 (271)
115 cd03226 ABC_cobalt_CbiO_domain 100.0 1.3E-43 2.8E-48 355.2 23.2 191 109-313 13-205 (205)
116 PRK14247 phosphate ABC transpo 100.0 4.6E-43 9.9E-48 361.9 27.9 219 69-322 3-233 (250)
117 PRK13644 cbiO cobalt transport 100.0 3.1E-43 6.8E-48 368.0 27.0 203 109-322 15-223 (274)
118 TIGR02211 LolD_lipo_ex lipopro 100.0 3.1E-43 6.8E-48 356.3 25.9 210 70-313 2-220 (221)
119 PRK10908 cell division protein 100.0 3.8E-43 8.3E-48 356.1 26.4 195 109-313 15-216 (222)
120 PRK11308 dppF dipeptide transp 100.0 6E-43 1.3E-47 373.9 29.2 228 69-322 5-243 (327)
121 TIGR03005 ectoine_ehuA ectoine 100.0 4.4E-43 9.4E-48 362.5 27.2 204 109-321 13-234 (252)
122 TIGR03411 urea_trans_UrtD urea 100.0 4.8E-43 1E-47 359.9 27.3 205 109-321 15-229 (242)
123 PRK11300 livG leucine/isoleuci 100.0 4.9E-43 1.1E-47 362.6 27.5 219 69-321 5-241 (255)
124 TIGR01978 sufC FeS assembly AT 100.0 3.9E-43 8.5E-48 360.5 26.5 209 109-322 13-233 (243)
125 PRK13649 cbiO cobalt transport 100.0 8.1E-43 1.8E-47 366.1 29.3 220 70-322 3-233 (280)
126 COG0410 LivF ABC-type branched 100.0 1.7E-43 3.8E-48 347.9 22.6 204 108-322 15-225 (237)
127 PRK11248 tauB taurine transpor 100.0 5.6E-43 1.2E-47 362.3 27.6 200 109-319 14-216 (255)
128 PRK13648 cbiO cobalt transport 100.0 9.4E-43 2E-47 363.5 29.4 219 68-322 6-230 (269)
129 PRK13548 hmuV hemin importer A 100.0 5.1E-43 1.1E-47 363.3 27.1 217 69-322 2-229 (258)
130 PRK14273 phosphate ABC transpo 100.0 6.3E-43 1.4E-47 361.7 27.6 217 69-322 7-237 (254)
131 PRK13632 cbiO cobalt transport 100.0 5.5E-43 1.2E-47 365.6 27.3 219 68-322 6-230 (271)
132 PRK13639 cbiO cobalt transport 100.0 1.1E-42 2.4E-47 364.0 29.6 216 70-322 2-225 (275)
133 PRK14267 phosphate ABC transpo 100.0 7.7E-43 1.7E-47 360.8 28.0 219 69-322 4-236 (253)
134 TIGR01842 type_I_sec_PrtD type 100.0 1.3E-43 2.8E-48 405.0 24.4 268 17-323 242-542 (544)
135 PRK13652 cbiO cobalt transport 100.0 7.9E-43 1.7E-47 365.6 28.3 218 69-322 3-226 (277)
136 cd03257 ABC_NikE_OppD_transpor 100.0 4.8E-43 1E-47 356.3 25.8 198 110-316 19-228 (228)
137 PRK11022 dppD dipeptide transp 100.0 7.4E-43 1.6E-47 373.3 28.5 226 69-322 3-242 (326)
138 cd03262 ABC_HisP_GlnQ_permease 100.0 3.5E-43 7.7E-48 353.8 24.5 195 109-312 13-213 (213)
139 PTZ00265 multidrug resistance 100.0 6.6E-44 1.4E-48 441.9 22.8 221 68-323 1164-1452(1466)
140 PRK11231 fecE iron-dicitrate t 100.0 5.4E-43 1.2E-47 362.5 25.9 220 69-322 2-226 (255)
141 PRK13657 cyclic beta-1,2-gluca 100.0 1.7E-43 3.8E-48 407.6 24.6 266 16-322 256-557 (588)
142 cd03225 ABC_cobalt_CbiO_domain 100.0 3.4E-43 7.4E-48 353.5 23.6 193 109-311 14-211 (211)
143 PRK11247 ssuB aliphatic sulfon 100.0 6.3E-43 1.4E-47 362.0 26.1 207 69-319 12-219 (257)
144 PRK14242 phosphate transporter 100.0 1E-42 2.2E-47 359.9 27.6 222 67-321 4-235 (253)
145 TIGR02769 nickel_nikE nickel i 100.0 9.2E-43 2E-47 362.8 27.4 227 69-322 2-239 (265)
146 PRK13640 cbiO cobalt transport 100.0 1.5E-42 3.4E-47 364.2 29.0 218 69-322 5-231 (282)
147 PRK10070 glycine betaine trans 100.0 9.8E-43 2.1E-47 379.7 28.5 206 107-322 39-253 (400)
148 PRK14235 phosphate transporter 100.0 1.4E-42 3.1E-47 361.7 28.2 223 68-322 18-250 (267)
149 PRK13633 cobalt transporter AT 100.0 1.5E-42 3.2E-47 364.0 28.4 221 69-322 4-232 (280)
150 PRK10575 iron-hydroxamate tran 100.0 9.6E-43 2.1E-47 362.7 26.7 221 68-322 10-236 (265)
151 cd03235 ABC_Metallic_Cations A 100.0 2.8E-43 6.2E-48 354.7 21.7 199 109-316 12-213 (213)
152 PRK15093 antimicrobial peptide 100.0 1.7E-42 3.7E-47 371.4 28.8 228 69-322 3-247 (330)
153 COG4152 ABC-type uncharacteriz 100.0 1.7E-43 3.6E-48 347.8 19.1 211 107-327 13-223 (300)
154 PRK10253 iron-enterobactin tra 100.0 1E-42 2.2E-47 362.5 26.0 221 68-322 6-232 (265)
155 PRK09984 phosphonate/organopho 100.0 1.2E-42 2.6E-47 361.3 26.5 220 69-321 4-240 (262)
156 PRK10584 putative ABC transpor 100.0 1.7E-42 3.8E-47 352.6 27.0 214 68-315 5-227 (228)
157 TIGR03873 F420-0_ABC_ATP propo 100.0 1.2E-42 2.7E-47 360.0 26.0 206 109-321 14-224 (256)
158 TIGR02203 MsbA_lipidA lipid A 100.0 1.8E-43 4E-48 406.2 22.0 267 17-322 255-555 (571)
159 TIGR01846 type_I_sec_HlyB type 100.0 2.3E-43 5E-48 413.8 23.1 268 16-323 378-680 (694)
160 PRK11160 cysteine/glutathione 100.0 3.8E-43 8.3E-48 403.2 24.4 216 68-323 337-562 (574)
161 TIGR03410 urea_trans_UrtE urea 100.0 1E-42 2.2E-47 354.7 24.9 200 109-321 13-219 (230)
162 TIGR03740 galliderm_ABC gallid 100.0 1.6E-42 3.4E-47 351.8 26.0 198 109-320 13-210 (223)
163 PRK14241 phosphate transporter 100.0 2.5E-42 5.4E-47 358.1 27.8 218 69-322 4-241 (258)
164 PRK10744 pstB phosphate transp 100.0 2.5E-42 5.3E-47 358.6 27.7 218 68-322 12-243 (260)
165 PRK14245 phosphate ABC transpo 100.0 3.1E-42 6.7E-47 355.7 28.0 222 68-322 2-233 (250)
166 cd03298 ABC_ThiQ_thiamine_tran 100.0 1.3E-42 2.8E-47 349.4 24.5 193 114-316 16-211 (211)
167 PRK14269 phosphate ABC transpo 100.0 2.4E-42 5.2E-47 355.8 27.0 209 109-322 15-229 (246)
168 PRK13645 cbiO cobalt transport 100.0 2.5E-42 5.5E-47 363.9 27.7 221 69-322 6-239 (289)
169 PRK13642 cbiO cobalt transport 100.0 4.1E-42 8.9E-47 360.1 29.0 219 69-322 4-228 (277)
170 PRK14250 phosphate ABC transpo 100.0 1.8E-42 3.9E-47 355.7 25.7 212 69-322 3-220 (241)
171 TIGR00968 3a0106s01 sulfate AB 100.0 2.7E-42 5.8E-47 353.5 26.8 204 109-322 13-219 (237)
172 cd03300 ABC_PotA_N PotA is an 100.0 3.6E-42 7.9E-47 351.4 27.1 204 109-322 13-219 (232)
173 TIGR03415 ABC_choXWV_ATP choli 100.0 2E-42 4.4E-47 374.7 26.5 207 106-322 34-253 (382)
174 COG0444 DppD ABC-type dipeptid 100.0 1.4E-42 3.1E-47 357.7 24.0 225 70-322 2-242 (316)
175 PRK10771 thiQ thiamine transpo 100.0 3.1E-42 6.7E-47 351.8 26.2 199 114-322 17-218 (232)
176 PRK15112 antimicrobial peptide 100.0 3.5E-42 7.5E-47 358.8 27.0 227 69-322 4-238 (267)
177 TIGR01277 thiQ thiamine ABC tr 100.0 3.2E-42 7E-47 347.2 25.9 197 111-317 13-212 (213)
178 PRK14274 phosphate ABC transpo 100.0 5.1E-42 1.1E-46 356.0 28.0 222 68-322 11-242 (259)
179 PRK14256 phosphate ABC transpo 100.0 5.3E-42 1.2E-46 354.4 28.0 221 69-321 4-234 (252)
180 PRK14259 phosphate ABC transpo 100.0 3.6E-42 7.9E-47 359.1 26.9 220 65-323 9-253 (269)
181 cd03299 ABC_ModC_like Archeal 100.0 5E-42 1.1E-46 351.1 27.4 202 111-322 14-218 (235)
182 PRK14237 phosphate transporter 100.0 6.7E-42 1.5E-46 356.7 28.9 222 68-322 19-250 (267)
183 PRK14257 phosphate ABC transpo 100.0 5.3E-42 1.2E-46 366.7 28.8 224 67-322 78-312 (329)
184 cd03267 ABC_NatA_like Similar 100.0 2.3E-42 4.9E-47 353.8 24.7 201 106-316 31-236 (236)
185 PRK11144 modC molybdate transp 100.0 3.1E-42 6.7E-47 372.4 26.9 193 114-322 16-217 (352)
186 COG4987 CydC ABC-type transpor 100.0 2.3E-43 4.9E-48 380.4 18.0 215 69-323 336-561 (573)
187 PRK14270 phosphate ABC transpo 100.0 6E-42 1.3E-46 353.8 27.7 218 68-322 3-234 (251)
188 PRK13549 xylose transporter AT 100.0 2.2E-42 4.8E-47 391.5 26.4 220 69-321 5-230 (506)
189 cd03233 ABC_PDR_domain1 The pl 100.0 3.9E-42 8.5E-47 343.9 24.9 194 69-316 3-202 (202)
190 COG4175 ProV ABC-type proline/ 100.0 7.7E-43 1.7E-47 354.2 19.5 203 110-322 42-253 (386)
191 PRK14272 phosphate ABC transpo 100.0 9.3E-42 2E-46 352.4 28.0 219 68-322 3-235 (252)
192 PRK14244 phosphate ABC transpo 100.0 7.4E-42 1.6E-46 353.1 27.0 208 109-321 18-235 (251)
193 TIGR02142 modC_ABC molybdenum 100.0 3.2E-42 7E-47 372.6 25.4 197 114-322 15-220 (354)
194 PRK14262 phosphate ABC transpo 100.0 1E-41 2.3E-46 351.7 28.0 221 69-322 3-233 (250)
195 PRK14239 phosphate transporter 100.0 1.1E-41 2.4E-46 351.9 28.1 221 69-322 5-235 (252)
196 cd03252 ABCC_Hemolysin The ABC 100.0 1.5E-42 3.3E-47 355.1 21.5 199 109-322 15-224 (237)
197 PRK10789 putative multidrug tr 100.0 8.9E-43 1.9E-47 400.0 22.0 266 18-323 239-538 (569)
198 PRK14240 phosphate transporter 100.0 1.3E-41 2.9E-46 350.9 28.0 217 69-322 3-233 (250)
199 PRK13547 hmuV hemin importer A 100.0 6.3E-42 1.4E-46 357.4 25.5 208 109-322 14-243 (272)
200 PRK14248 phosphate ABC transpo 100.0 1.5E-41 3.2E-46 354.3 28.1 217 69-322 21-251 (268)
201 PRK14251 phosphate ABC transpo 100.0 1.5E-41 3.3E-46 350.7 27.6 217 69-322 4-234 (251)
202 TIGR02204 MsbA_rel ABC transpo 100.0 2.8E-42 6.1E-47 396.8 24.0 216 68-322 336-562 (576)
203 PRK11701 phnK phosphonate C-P 100.0 1.6E-41 3.6E-46 352.0 27.3 218 69-322 6-240 (258)
204 TIGR01184 ntrCD nitrate transp 100.0 5.4E-42 1.2E-46 349.7 23.3 201 112-321 1-202 (230)
205 PRK14236 phosphate transporter 100.0 2.8E-41 6.1E-46 353.0 28.8 222 68-322 24-255 (272)
206 PRK10418 nikD nickel transport 100.0 1.8E-41 3.8E-46 351.0 26.7 217 67-322 2-229 (254)
207 PRK14253 phosphate ABC transpo 100.0 2E-41 4.3E-46 349.5 27.0 220 69-321 3-231 (249)
208 TIGR01192 chvA glucan exporter 100.0 4E-42 8.7E-47 395.5 24.2 269 16-323 256-558 (585)
209 PRK10762 D-ribose transporter 100.0 9E-42 1.9E-46 386.1 26.3 219 69-321 4-228 (501)
210 PRK14260 phosphate ABC transpo 100.0 2.3E-41 5E-46 351.1 27.2 217 69-322 7-242 (259)
211 COG4559 ABC-type hemin transpo 100.0 4.7E-42 1E-46 331.4 20.3 205 108-322 13-229 (259)
212 PRK14271 phosphate ABC transpo 100.0 3E-41 6.5E-46 353.3 28.1 221 69-322 21-250 (276)
213 PRK14238 phosphate transporter 100.0 2.9E-41 6.2E-46 352.7 27.5 218 67-321 22-253 (271)
214 PRK14258 phosphate ABC transpo 100.0 3.7E-41 8E-46 350.0 28.0 222 69-322 7-244 (261)
215 PRK09700 D-allose transporter 100.0 1.4E-41 3E-46 385.4 27.0 219 69-321 5-232 (510)
216 PRK14249 phosphate ABC transpo 100.0 3.8E-41 8.1E-46 347.9 27.7 220 69-321 4-233 (251)
217 COG4181 Predicted ABC-type tra 100.0 2.6E-42 5.6E-47 322.5 17.1 196 108-314 22-226 (228)
218 cd03232 ABC_PDR_domain2 The pl 100.0 2E-41 4.4E-46 336.1 24.5 188 69-316 3-192 (192)
219 PRK14254 phosphate ABC transpo 100.0 5.2E-41 1.1E-45 353.0 28.8 216 67-321 37-267 (285)
220 PRK14275 phosphate ABC transpo 100.0 5.6E-41 1.2E-45 353.1 28.9 218 68-322 38-269 (286)
221 cd03251 ABCC_MsbA MsbA is an e 100.0 7.5E-42 1.6E-46 349.2 21.6 200 109-323 15-225 (234)
222 PRK14255 phosphate ABC transpo 100.0 5.6E-41 1.2E-45 346.7 28.2 218 68-322 4-235 (252)
223 COG4618 ArpD ABC-type protease 100.0 4.6E-42 9.9E-47 367.1 20.5 280 16-327 259-564 (580)
224 cd03297 ABC_ModC_molybdenum_tr 100.0 1.8E-41 3.9E-46 341.9 23.8 190 114-316 16-214 (214)
225 PRK14261 phosphate ABC transpo 100.0 5E-41 1.1E-45 347.3 27.6 221 69-322 6-236 (253)
226 TIGR02982 heterocyst_DevA ABC 100.0 3.5E-41 7.5E-46 341.4 25.9 210 70-312 2-219 (220)
227 TIGR02770 nickel_nikD nickel i 100.0 2.4E-41 5.1E-46 344.9 24.8 203 111-322 1-214 (230)
228 COG1123 ATPase components of v 100.0 2.3E-41 5.1E-46 371.9 26.4 226 69-323 5-244 (539)
229 PRK15439 autoinducer 2 ABC tra 100.0 3.1E-41 6.6E-46 382.3 27.8 212 69-321 11-227 (510)
230 PRK10419 nikE nickel transport 100.0 4.1E-41 8.8E-46 351.0 26.4 227 69-322 3-240 (268)
231 COG4598 HisP ABC-type histidin 100.0 2.6E-42 5.7E-47 324.6 15.6 208 106-322 16-240 (256)
232 PRK14263 phosphate ABC transpo 100.0 7.2E-41 1.6E-45 347.8 28.1 206 109-322 21-244 (261)
233 TIGR02868 CydC thiol reductant 100.0 3.7E-42 8E-47 391.9 19.7 235 18-293 256-529 (529)
234 CHL00131 ycf16 sulfate ABC tra 100.0 9.1E-41 2E-45 345.0 28.3 221 69-321 7-239 (252)
235 COG5265 ATM1 ABC-type transpor 100.0 1.8E-42 4E-47 362.8 15.7 223 67-323 260-486 (497)
236 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 1.1E-41 2.4E-46 348.9 20.9 201 109-324 16-227 (238)
237 TIGR03608 L_ocin_972_ABC putat 100.0 2.4E-41 5.3E-46 338.6 22.8 188 109-307 11-206 (206)
238 COG1123 ATPase components of v 100.0 2.8E-41 6E-46 371.4 25.0 231 68-322 279-518 (539)
239 PRK14265 phosphate ABC transpo 100.0 1.1E-40 2.3E-45 348.9 28.2 219 65-322 16-257 (274)
240 TIGR02323 CP_lyasePhnK phospho 100.0 8.3E-41 1.8E-45 345.6 26.8 218 69-322 3-237 (253)
241 cd03254 ABCC_Glucan_exporter_l 100.0 1.7E-41 3.8E-46 345.3 21.4 214 69-323 2-226 (229)
242 PRK14266 phosphate ABC transpo 100.0 1.1E-40 2.4E-45 344.1 27.1 221 69-322 3-233 (250)
243 cd03213 ABCG_EPDR ABCG transpo 100.0 9.2E-41 2E-45 331.9 25.5 191 68-316 2-194 (194)
244 cd03289 ABCC_CFTR2 The CFTR su 100.0 3E-41 6.4E-46 352.3 23.0 213 69-323 2-225 (275)
245 TIGR02633 xylG D-xylose ABC tr 100.0 5.5E-41 1.2E-45 379.7 27.0 207 109-321 14-228 (500)
246 PRK15056 manganese/iron transp 100.0 7.2E-41 1.6E-45 349.9 25.8 219 69-321 6-228 (272)
247 PRK10247 putative ABC transpor 100.0 3.7E-41 8E-46 342.4 23.0 210 69-319 7-223 (225)
248 PRK14243 phosphate transporter 100.0 9.5E-41 2.1E-45 347.5 26.0 219 69-322 10-247 (264)
249 PRK11288 araG L-arabinose tran 100.0 8.9E-41 1.9E-45 377.9 27.5 216 69-318 4-224 (501)
250 PRK09580 sufC cysteine desulfu 100.0 1.9E-40 4.1E-45 341.7 27.4 216 109-330 14-241 (248)
251 PLN03130 ABC transporter C fam 100.0 1.8E-41 3.8E-46 424.0 23.2 215 68-323 1236-1461(1622)
252 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 1.4E-40 2.9E-45 338.1 25.2 224 70-316 1-224 (224)
253 PRK10261 glutathione transport 100.0 1.5E-40 3.3E-45 384.5 28.8 229 69-322 313-552 (623)
254 PRK10982 galactose/methyl gala 100.0 7.7E-41 1.7E-45 377.6 25.3 206 109-321 11-221 (491)
255 PRK03695 vitamin B12-transport 100.0 1.1E-40 2.5E-45 343.8 24.1 199 111-321 11-220 (248)
256 cd03253 ABCC_ATM1_transporter 100.0 5.7E-41 1.2E-45 343.1 21.7 201 109-322 14-223 (236)
257 cd03245 ABCC_bacteriocin_expor 100.0 4.6E-41 1E-45 340.2 20.8 194 109-316 17-220 (220)
258 TIGR02857 CydD thiol reductant 100.0 1.5E-41 3.3E-46 386.9 19.3 199 69-307 320-529 (529)
259 PLN03232 ABC transporter C fam 100.0 1.9E-41 4.2E-46 423.2 21.9 215 68-323 1233-1458(1495)
260 PRK14264 phosphate ABC transpo 100.0 3.4E-40 7.5E-45 350.1 28.3 225 67-322 43-288 (305)
261 COG4525 TauB ABC-type taurine 100.0 7.9E-41 1.7E-45 318.7 20.6 202 109-321 18-222 (259)
262 PRK13543 cytochrome c biogenes 100.0 1.9E-40 4E-45 334.7 24.6 202 68-309 10-212 (214)
263 PRK14246 phosphate ABC transpo 100.0 3.4E-40 7.5E-45 341.9 27.1 217 69-322 10-240 (257)
264 TIGR03269 met_CoM_red_A2 methy 100.0 1.9E-40 4.2E-45 376.9 27.4 208 109-325 13-260 (520)
265 PRK10261 glutathione transport 100.0 1.6E-40 3.5E-45 384.3 26.7 222 69-322 12-257 (623)
266 PRK13538 cytochrome c biogenes 100.0 2.1E-40 4.6E-45 331.8 23.9 186 109-307 14-202 (204)
267 TIGR01257 rim_protein retinal- 100.0 2E-40 4.4E-45 411.5 29.0 224 68-326 1936-2162(2272)
268 PRK13549 xylose transporter AT 100.0 1.1E-40 2.3E-45 377.8 24.4 207 109-321 275-492 (506)
269 PRK15134 microcin C ABC transp 100.0 3.6E-40 7.8E-45 375.4 28.2 223 69-322 5-245 (529)
270 PRK14252 phosphate ABC transpo 100.0 6.6E-40 1.4E-44 341.3 27.8 222 66-321 13-247 (265)
271 PRK15134 microcin C ABC transp 100.0 2.1E-40 4.6E-45 377.2 25.8 205 109-322 299-514 (529)
272 COG4161 ArtP ABC-type arginine 100.0 9.4E-41 2E-45 309.0 18.0 204 107-319 13-226 (242)
273 cd03217 ABC_FeS_Assembly ABC-t 100.0 3.3E-40 7.1E-45 329.5 23.4 180 109-329 13-199 (200)
274 TIGR03269 met_CoM_red_A2 methy 100.0 4.4E-40 9.6E-45 374.0 27.6 204 109-323 297-517 (520)
275 cd03231 ABC_CcmA_heme_exporter 100.0 3.1E-40 6.7E-45 329.9 22.8 183 109-307 13-198 (201)
276 cd03230 ABC_DR_subfamily_A Thi 100.0 3.2E-40 6.9E-45 322.1 22.1 158 109-312 13-173 (173)
277 COG1129 MglA ABC-type sugar tr 100.0 4.2E-40 9.2E-45 359.8 25.1 216 68-317 7-228 (500)
278 TIGR00957 MRP_assoc_pro multi 100.0 1E-40 2.3E-45 417.1 22.6 215 68-323 1283-1508(1522)
279 cd03248 ABCC_TAP TAP, the Tran 100.0 1.3E-40 2.8E-45 338.4 18.5 211 68-312 10-226 (226)
280 PRK13546 teichoic acids export 100.0 4.3E-39 9.4E-44 334.6 29.8 230 68-323 3-232 (264)
281 cd03244 ABCC_MRP_domain2 Domai 100.0 4.3E-40 9.2E-45 333.3 21.7 207 70-317 3-220 (221)
282 PRK09544 znuC high-affinity zi 100.0 8.8E-40 1.9E-44 337.6 24.0 202 69-322 4-208 (251)
283 TIGR02324 CP_lyasePhnL phospho 100.0 1.3E-39 2.8E-44 330.5 24.8 209 70-308 2-223 (224)
284 TIGR01189 ccmA heme ABC export 100.0 9.3E-40 2E-44 325.6 23.0 182 109-306 13-197 (198)
285 TIGR02633 xylG D-xylose ABC tr 100.0 5.5E-40 1.2E-44 371.6 23.9 205 109-319 273-488 (500)
286 PTZ00243 ABC transporter; Prov 100.0 2.1E-40 4.6E-45 413.7 22.4 215 68-323 1307-1533(1560)
287 PRK09700 D-allose transporter 100.0 6.1E-40 1.3E-44 372.0 24.2 202 110-318 277-493 (510)
288 cd03288 ABCC_SUR2 The SUR doma 100.0 7.7E-40 1.7E-44 339.3 22.3 215 68-323 18-243 (257)
289 TIGR01166 cbiO cobalt transpor 100.0 1E-39 2.2E-44 323.1 21.8 176 109-294 5-188 (190)
290 PRK13540 cytochrome c biogenes 100.0 1.2E-39 2.6E-44 325.3 22.3 181 109-305 14-197 (200)
291 cd03229 ABC_Class3 This class 100.0 1.1E-39 2.4E-44 319.8 20.9 159 109-311 13-178 (178)
292 cd03246 ABCC_Protease_Secretio 100.0 1.1E-39 2.4E-44 318.3 20.8 155 109-312 15-173 (173)
293 cd03247 ABCC_cytochrome_bd The 100.0 1.3E-39 2.9E-44 319.1 21.2 161 109-316 15-178 (178)
294 PRK10938 putative molybdenum t 100.0 1E-39 2.2E-44 368.5 23.1 209 69-322 3-223 (490)
295 PRK13545 tagH teichoic acids e 100.0 5.5E-39 1.2E-43 354.6 28.1 198 109-325 37-234 (549)
296 PRK13539 cytochrome c biogenes 100.0 2.3E-39 5E-44 325.1 22.8 198 69-309 2-200 (207)
297 cd03215 ABC_Carb_Monos_II This 100.0 2.5E-39 5.4E-44 318.3 21.6 160 111-312 15-182 (182)
298 TIGR03771 anch_rpt_ABC anchore 100.0 2.5E-39 5.4E-44 328.6 22.1 197 117-322 1-200 (223)
299 cd03369 ABCC_NFT1 Domain 2 of 100.0 4.3E-39 9.3E-44 322.9 23.6 198 69-318 6-207 (207)
300 PRK11288 araG L-arabinose tran 100.0 2.1E-39 4.5E-44 366.8 23.6 205 110-321 267-483 (501)
301 PRK10762 D-ribose transporter 100.0 3.1E-39 6.7E-44 365.4 24.4 205 110-321 266-482 (501)
302 COG4172 ABC-type uncharacteriz 100.0 7.2E-39 1.6E-43 333.6 24.7 234 65-322 272-515 (534)
303 TIGR01271 CFTR_protein cystic 100.0 3.1E-39 6.6E-44 402.9 25.0 214 68-323 1216-1440(1490)
304 COG4604 CeuD ABC-type enteroch 100.0 2.5E-40 5.3E-45 315.9 11.5 208 107-322 12-224 (252)
305 COG0396 sufC Cysteine desulfur 100.0 2.5E-38 5.3E-43 310.2 25.1 231 69-332 3-242 (251)
306 COG4148 ModC ABC-type molybdat 100.0 7.1E-40 1.5E-44 327.5 14.4 193 114-322 16-217 (352)
307 TIGR01187 potA spermidine/putr 100.0 7.8E-39 1.7E-43 342.4 23.4 186 127-322 1-189 (325)
308 COG4619 ABC-type uncharacteriz 100.0 4.1E-40 9E-45 306.9 11.5 200 100-312 7-212 (223)
309 cd03214 ABC_Iron-Siderophores_ 100.0 4E-39 8.8E-44 316.3 18.9 164 109-316 12-180 (180)
310 COG3845 ABC-type uncharacteriz 100.0 9.5E-39 2.1E-43 342.5 22.8 215 69-317 4-223 (501)
311 PTZ00265 multidrug resistance 100.0 6.3E-39 1.4E-43 397.7 24.2 213 69-310 382-655 (1466)
312 PRK10522 multidrug transporter 100.0 9.4E-39 2E-43 365.2 23.6 203 68-315 321-530 (547)
313 cd03291 ABCC_CFTR1 The CFTR su 100.0 7.6E-38 1.6E-42 327.8 26.6 189 109-322 50-246 (282)
314 PRK15439 autoinducer 2 ABC tra 100.0 1.6E-38 3.5E-43 360.1 23.0 204 111-321 278-490 (510)
315 cd03250 ABCC_MRP_domain1 Domai 100.0 1.7E-38 3.8E-43 317.8 19.1 179 109-311 18-204 (204)
316 PRK13541 cytochrome c biogenes 100.0 5.5E-38 1.2E-42 312.1 22.6 179 110-305 15-193 (195)
317 PRK10535 macrolide transporter 100.0 9.6E-38 2.1E-42 362.5 28.0 220 69-322 4-231 (648)
318 TIGR01194 cyc_pep_trnsptr cycl 100.0 3.5E-38 7.6E-43 360.8 23.8 210 68-315 336-551 (555)
319 cd03290 ABCC_SUR1_N The SUR do 100.0 5.2E-38 1.1E-42 317.6 22.2 188 109-311 14-218 (218)
320 cd03228 ABCC_MRP_Like The MRP 100.0 4.3E-38 9.4E-43 306.5 20.2 152 110-311 16-171 (171)
321 cd03216 ABC_Carb_Monos_I This 100.0 1E-37 2.2E-42 301.6 22.0 145 109-314 13-162 (163)
322 PRK10982 galactose/methyl gala 100.0 1.4E-37 3E-42 351.2 23.5 204 109-319 261-476 (491)
323 PRK15177 Vi polysaccharide exp 100.0 1.5E-37 3.2E-42 313.4 21.2 194 111-327 2-196 (213)
324 cd03223 ABCD_peroxisomal_ALDP 100.0 1.8E-37 4E-42 300.7 21.1 150 109-310 14-163 (166)
325 PRK15064 ABC transporter ATP-b 100.0 3.2E-37 6.8E-42 351.3 25.9 210 70-323 2-242 (530)
326 PLN03232 ABC transporter C fam 100.0 1.1E-37 2.5E-42 389.4 23.8 257 17-323 539-828 (1495)
327 PRK11819 putative ABC transpor 100.0 3.6E-37 7.8E-42 352.5 25.8 212 67-322 4-249 (556)
328 PRK10938 putative molybdenum t 100.0 2.4E-37 5.2E-42 349.2 22.3 202 109-317 273-486 (490)
329 cd03237 ABC_RNaseL_inhibitor_d 100.0 8.3E-37 1.8E-41 314.4 23.8 189 111-321 9-205 (246)
330 COG1119 ModF ABC-type molybden 100.0 2E-37 4.4E-42 307.2 18.0 217 67-317 29-256 (257)
331 PLN03130 ABC transporter C fam 100.0 3.5E-37 7.5E-42 385.5 24.5 256 17-323 539-828 (1622)
332 COG4172 ABC-type uncharacteriz 100.0 6.7E-37 1.4E-41 319.0 21.8 226 69-322 6-246 (534)
333 PRK15064 ABC transporter ATP-b 100.0 6.5E-37 1.4E-41 348.8 23.6 203 68-322 318-524 (530)
334 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1E-36 2.3E-41 348.5 24.6 211 69-323 4-248 (552)
335 COG4608 AppF ABC-type oligopep 100.0 1.2E-36 2.6E-41 307.8 20.4 193 69-322 4-198 (268)
336 COG4586 ABC-type uncharacteriz 100.0 9.8E-37 2.1E-41 304.6 17.0 208 109-326 37-249 (325)
337 PRK11819 putative ABC transpor 100.0 7.3E-36 1.6E-40 341.7 25.0 205 68-321 323-531 (556)
338 COG4674 Uncharacterized ABC-ty 100.0 2.6E-36 5.7E-41 288.0 16.1 207 108-322 17-234 (249)
339 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.4E-35 2.9E-40 339.3 24.7 204 68-320 321-528 (552)
340 PRK13409 putative ATPase RIL; 100.0 1.1E-35 2.3E-40 340.4 23.3 182 111-317 354-536 (590)
341 cd03236 ABC_RNaseL_inhibitor_d 100.0 6.1E-36 1.3E-40 309.3 19.0 189 110-316 15-220 (255)
342 COG1134 TagH ABC-type polysacc 100.0 5.8E-35 1.3E-39 290.2 24.1 239 69-328 3-241 (249)
343 PRK10636 putative ABC transpor 100.0 4.8E-35 1E-39 339.1 24.4 189 109-323 325-517 (638)
344 TIGR00954 3a01203 Peroxysomal 100.0 2.6E-35 5.6E-40 342.5 21.3 198 69-308 451-652 (659)
345 COG1101 PhnK ABC-type uncharac 100.0 2.7E-35 5.9E-40 285.2 17.2 203 107-316 17-231 (263)
346 cd03238 ABC_UvrA The excision 100.0 8.3E-35 1.8E-39 283.9 20.0 157 108-312 7-166 (176)
347 PRK11147 ABC transporter ATPas 100.0 1.1E-34 2.4E-39 336.6 24.0 191 109-321 332-526 (635)
348 KOG0054 Multidrug resistance-a 100.0 3.4E-35 7.5E-40 351.4 19.9 222 68-323 1137-1362(1381)
349 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 1.4E-34 3E-39 274.0 19.4 132 109-311 13-144 (144)
350 TIGR00957 MRP_assoc_pro multi 100.0 7.6E-35 1.7E-39 364.6 23.1 209 69-323 636-850 (1522)
351 PLN03073 ABC transporter F fam 100.0 2.9E-34 6.2E-39 334.3 26.1 207 68-324 507-715 (718)
352 PRK10636 putative ABC transpor 100.0 3E-34 6.4E-39 332.6 23.7 208 70-322 2-235 (638)
353 COG4167 SapF ABC-type antimicr 100.0 2.3E-34 5E-39 271.6 17.6 205 109-322 26-238 (267)
354 cd03222 ABC_RNaseL_inhibitor T 100.0 2.4E-34 5.3E-39 280.9 18.0 145 108-319 12-159 (177)
355 COG4136 ABC-type uncharacteriz 100.0 1.1E-34 2.4E-39 265.8 13.9 180 107-295 13-197 (213)
356 KOG0059 Lipid exporter ABCA1 a 100.0 3.2E-34 7E-39 342.1 19.9 207 111-327 580-791 (885)
357 PRK11147 ABC transporter ATPas 100.0 1.6E-33 3.6E-38 326.8 24.3 207 69-322 3-242 (635)
358 TIGR01271 CFTR_protein cystic 100.0 1.4E-33 3E-38 352.3 23.6 192 109-323 439-636 (1490)
359 cd00267 ABC_ATPase ABC (ATP-bi 100.0 3.7E-33 8E-38 267.8 20.1 142 109-311 12-157 (157)
360 PRK13409 putative ATPase RIL; 100.0 2E-33 4.4E-38 321.7 19.0 180 109-310 87-287 (590)
361 COG4133 CcmA ABC-type transpor 100.0 3.4E-33 7.3E-38 266.1 15.6 184 100-295 6-192 (209)
362 KOG0054 Multidrug resistance-a 100.0 1.8E-32 4E-37 328.1 23.4 208 67-322 516-730 (1381)
363 PTZ00243 ABC transporter; Prov 100.0 1.6E-32 3.5E-37 343.1 22.0 199 107-322 671-869 (1560)
364 COG0488 Uup ATPase components 100.0 8.9E-32 1.9E-36 301.4 20.6 197 108-322 15-239 (530)
365 PLN03073 ABC transporter F fam 100.0 6.2E-32 1.3E-36 314.8 18.1 219 66-321 174-429 (718)
366 COG4107 PhnK ABC-type phosphon 100.0 1.4E-31 3.1E-36 251.0 15.1 200 110-322 20-240 (258)
367 cd03270 ABC_UvrA_I The excisio 100.0 5.1E-31 1.1E-35 268.2 20.6 190 108-316 7-226 (226)
368 COG4778 PhnL ABC-type phosphon 100.0 2.6E-31 5.6E-36 248.4 14.0 192 109-309 24-227 (235)
369 PF00005 ABC_tran: ABC transpo 100.0 4.3E-31 9.4E-36 246.9 13.3 133 112-262 1-137 (137)
370 cd03271 ABC_UvrA_II The excisi 100.0 3.3E-30 7.1E-35 266.1 19.8 194 109-318 8-261 (261)
371 COG1129 MglA ABC-type sugar tr 100.0 1.1E-28 2.3E-33 270.4 22.9 201 111-318 274-485 (500)
372 COG0488 Uup ATPase components 100.0 1.5E-28 3.3E-33 275.4 21.5 204 67-323 319-525 (530)
373 cd03278 ABC_SMC_barmotin Barmo 100.0 2.4E-29 5.2E-34 250.5 13.1 164 113-309 14-190 (197)
374 COG4138 BtuD ABC-type cobalami 100.0 8.9E-30 1.9E-34 239.1 5.8 195 112-322 15-220 (248)
375 cd03272 ABC_SMC3_euk Eukaryoti 99.9 3.4E-27 7.4E-32 242.4 14.5 185 108-308 14-234 (243)
376 cd03273 ABC_SMC2_euk Eukaryoti 99.9 8E-28 1.7E-32 248.6 9.8 185 119-308 23-242 (251)
377 cd03274 ABC_SMC4_euk Eukaryoti 99.9 1.5E-28 3.3E-33 247.4 2.7 179 107-309 15-204 (212)
378 PRK00635 excinuclease ABC subu 99.9 1.4E-25 2.9E-30 275.8 23.6 207 109-323 608-906 (1809)
379 cd03279 ABC_sbcCD SbcCD and ot 99.9 3.6E-26 7.8E-31 230.5 15.2 179 113-311 18-210 (213)
380 COG3845 ABC-type uncharacteriz 99.9 3.2E-25 7E-30 238.6 22.5 206 109-321 271-490 (501)
381 cd03240 ABC_Rad50 The catalyti 99.9 2.3E-26 5.1E-31 230.3 12.4 165 114-309 15-197 (204)
382 COG4178 ABC-type uncharacteriz 99.9 1.4E-25 3.1E-30 250.3 18.6 197 67-308 390-587 (604)
383 COG4615 PvdE ABC-type sideroph 99.9 2.9E-26 6.3E-31 238.8 9.1 205 68-316 321-530 (546)
384 PRK00349 uvrA excinuclease ABC 99.9 2E-24 4.3E-29 255.9 24.5 125 182-322 792-926 (943)
385 TIGR00630 uvra excinuclease AB 99.9 9.6E-24 2.1E-28 249.7 22.2 125 181-321 789-923 (924)
386 COG4170 SapD ABC-type antimicr 99.9 1.2E-24 2.6E-29 209.9 10.7 214 107-323 18-248 (330)
387 KOG0927 Predicted transporter 99.9 2E-24 4.3E-29 233.4 11.8 204 67-320 387-593 (614)
388 cd03276 ABC_SMC6_euk Eukaryoti 99.9 2.2E-23 4.8E-28 207.8 14.9 167 112-311 12-192 (198)
389 KOG0927 Predicted transporter 99.9 1.3E-23 2.7E-28 227.2 13.3 202 108-322 87-308 (614)
390 KOG0060 Long-chain acyl-CoA tr 99.9 7.5E-23 1.6E-27 222.7 19.0 205 67-309 431-641 (659)
391 cd03275 ABC_SMC1_euk Eukaryoti 99.9 2.6E-23 5.7E-28 214.4 10.4 179 120-308 21-232 (247)
392 COG1245 Predicted ATPase, RNas 99.9 2.8E-22 6.1E-27 212.6 17.0 174 111-308 356-530 (591)
393 KOG0066 eIF2-interacting prote 99.9 2.7E-21 5.9E-26 203.2 13.4 178 107-310 598-777 (807)
394 KOG2355 Predicted ABC-type tra 99.9 1.1E-20 2.4E-25 182.2 15.7 210 68-323 12-237 (291)
395 cd03280 ABC_MutS2 MutS2 homolo 99.8 4.7E-21 1E-25 191.4 12.6 147 111-316 16-172 (200)
396 cd03277 ABC_SMC5_euk Eukaryoti 99.8 6.3E-21 1.4E-25 192.3 13.4 80 231-311 124-211 (213)
397 KOG0062 ATPase component of AB 99.8 1.6E-21 3.4E-26 210.0 8.1 192 106-322 90-284 (582)
398 KOG0062 ATPase component of AB 99.8 2.1E-20 4.6E-25 201.3 14.2 204 66-318 359-564 (582)
399 COG1245 Predicted ATPase, RNas 99.8 8.5E-21 1.8E-25 201.4 9.0 171 119-309 97-288 (591)
400 cd03239 ABC_SMC_head The struc 99.8 1.4E-19 3E-24 177.5 15.0 74 234-309 95-172 (178)
401 PF01061 ABC2_membrane: ABC-2 99.8 1.6E-21 3.6E-26 193.6 0.7 203 416-622 1-207 (210)
402 cd03283 ABC_MutS-like MutS-lik 99.8 9.5E-20 2.1E-24 181.8 9.9 147 109-307 14-163 (199)
403 KOG0064 Peroxisomal long-chain 99.8 1.2E-19 2.6E-24 195.2 11.0 172 108-295 494-671 (728)
404 COG2401 ABC-type ATPase fused 99.8 5E-19 1.1E-23 186.0 12.5 185 107-313 394-588 (593)
405 PRK00635 excinuclease ABC subu 99.8 2.8E-18 6E-23 211.9 21.1 199 110-323 1504-1796(1809)
406 cd03285 ABC_MSH2_euk MutS2 hom 99.8 2E-19 4.2E-24 182.5 9.1 152 109-317 17-175 (222)
407 cd03241 ABC_RecN RecN ATPase i 99.8 1.1E-18 2.4E-23 182.9 14.9 76 233-311 170-249 (276)
408 COG0178 UvrA Excinuclease ATPa 99.8 9.8E-18 2.1E-22 189.0 19.3 128 181-323 783-919 (935)
409 PRK00349 uvrA excinuclease ABC 99.8 3.2E-18 6.9E-23 203.4 15.9 136 179-322 434-584 (943)
410 cd03227 ABC_Class2 ABC-type Cl 99.8 3E-18 6.5E-23 165.5 12.2 75 233-309 77-155 (162)
411 TIGR00630 uvra excinuclease AB 99.8 5E-18 1.1E-22 201.4 15.9 135 180-322 433-582 (924)
412 cd03243 ABC_MutS_homologs The 99.7 1E-17 2.3E-22 167.5 11.2 156 114-321 21-177 (202)
413 cd03242 ABC_RecF RecF is a rec 99.7 7.1E-17 1.5E-21 168.8 16.7 77 231-312 181-269 (270)
414 cd03282 ABC_MSH4_euk MutS4 hom 99.7 9.9E-17 2.2E-21 160.5 8.7 135 109-294 16-152 (204)
415 KOG0066 eIF2-interacting prote 99.6 1.3E-16 2.9E-21 168.1 5.7 212 99-321 267-497 (807)
416 cd03284 ABC_MutS1 MutS1 homolo 99.6 1.1E-15 2.4E-20 154.5 10.7 157 109-322 18-180 (216)
417 TIGR02858 spore_III_AA stage I 99.6 3.1E-15 6.7E-20 155.5 11.5 139 123-321 112-267 (270)
418 PRK00064 recF recombination pr 99.5 2E-13 4.3E-18 148.5 18.5 77 232-312 272-359 (361)
419 KOG0063 RNAse L inhibitor, ABC 99.5 5.6E-14 1.2E-18 148.7 12.4 176 109-308 349-531 (592)
420 smart00534 MUTSac ATPase domai 99.5 1.2E-14 2.6E-19 143.5 5.2 80 232-314 60-141 (185)
421 cd00820 PEPCK_HprK Phosphoenol 99.5 7.1E-14 1.5E-18 124.5 6.4 73 109-191 2-78 (107)
422 PF02463 SMC_N: RecF/RecN/SMC 99.5 4.2E-13 9.2E-18 135.8 12.6 88 207-308 121-212 (220)
423 cd03281 ABC_MSH5_euk MutS5 hom 99.4 7.5E-13 1.6E-17 133.6 12.7 132 110-294 17-155 (213)
424 TIGR01069 mutS2 MutS2 family p 99.4 1.6E-13 3.4E-18 161.6 8.2 136 109-294 303-446 (771)
425 KOG0063 RNAse L inhibitor, ABC 99.4 5.5E-13 1.2E-17 141.3 8.8 185 120-325 98-309 (592)
426 TIGR01247 drrB daunorubicin re 99.4 9.1E-11 2E-15 120.0 22.9 145 506-663 87-234 (236)
427 PTZ00132 GTP-binding nuclear p 99.4 8.6E-13 1.9E-17 133.0 6.7 45 237-281 156-205 (215)
428 cd03287 ABC_MSH3_euk MutS3 hom 99.4 5.7E-12 1.2E-16 127.7 12.4 134 109-294 18-155 (222)
429 cd01128 rho_factor Transcripti 99.3 3.3E-12 7.2E-17 131.5 9.8 174 116-312 10-211 (249)
430 TIGR03062 pip_yhgE_Cterm YhgE/ 99.3 3.9E-11 8.4E-16 120.4 17.2 148 507-669 58-207 (208)
431 TIGR00634 recN DNA repair prot 99.3 5.7E-12 1.2E-16 144.9 9.5 77 232-311 439-519 (563)
432 PRK07721 fliI flagellum-specif 99.3 3.4E-11 7.4E-16 133.1 14.3 171 109-320 146-340 (438)
433 PRK10869 recombination and rep 99.3 1.4E-11 3.1E-16 140.7 10.8 77 232-311 429-509 (553)
434 PRK00409 recombination and DNA 99.3 5.2E-12 1.1E-16 149.3 7.1 80 232-314 389-469 (782)
435 PHA02562 46 endonuclease subun 99.3 1.1E-11 2.4E-16 142.8 9.3 78 231-312 466-555 (562)
436 TIGR00025 Mtu_efflux ABC trans 99.2 2E-09 4.2E-14 110.1 23.7 162 493-668 64-231 (232)
437 COG0178 UvrA Excinuclease ATPa 99.2 9E-11 2E-15 133.4 14.3 137 179-323 426-577 (935)
438 TIGR00618 sbcc exonuclease Sbc 99.2 3.1E-11 6.8E-16 148.2 11.4 80 230-310 947-1036(1042)
439 TIGR01291 nodJ ABC-2 type tran 99.2 6.1E-09 1.3E-13 108.0 26.6 233 419-669 8-251 (253)
440 PRK08533 flagellar accessory p 99.2 1.2E-10 2.6E-15 119.0 12.7 150 118-308 20-184 (230)
441 PF13304 AAA_21: AAA domain; P 99.2 1.7E-11 3.8E-16 123.7 6.3 63 232-294 235-300 (303)
442 TIGR03861 phenyl_ABC_PedC alco 99.2 9.9E-09 2.1E-13 106.3 26.8 234 415-667 1-250 (253)
443 cd01124 KaiC KaiC is a circadi 99.2 1.5E-10 3.2E-15 113.7 12.3 78 231-308 69-163 (187)
444 cd03286 ABC_MSH6_euk MutS6 hom 99.2 7.6E-11 1.7E-15 119.2 8.9 134 109-294 17-154 (218)
445 PRK13695 putative NTPase; Prov 99.1 1.2E-10 2.5E-15 113.8 8.6 79 232-316 77-157 (174)
446 COG3910 Predicted ATPase [Gene 99.1 1.5E-09 3.2E-14 104.5 13.8 79 230-311 126-205 (233)
447 TIGR02788 VirB11 P-type DNA tr 99.1 3.1E-10 6.8E-15 121.0 9.9 144 114-322 136-280 (308)
448 PRK03918 chromosome segregatio 99.1 2.9E-10 6.2E-15 137.9 10.3 77 230-308 785-867 (880)
449 TIGR00606 rad50 rad50. This fa 99.1 2.5E-10 5.4E-15 143.1 9.9 76 223-301 1191-1277(1311)
450 PRK15066 inner membrane transp 99.1 1.7E-07 3.7E-12 97.3 28.7 239 414-670 6-254 (257)
451 PRK10246 exonuclease subunit S 99.0 6.7E-10 1.4E-14 136.1 11.2 79 230-309 946-1032(1047)
452 cd01120 RecA-like_NTPases RecA 99.0 1.1E-09 2.3E-14 104.1 9.6 64 233-296 67-140 (165)
453 PRK13830 conjugal transfer pro 99.0 5.7E-09 1.2E-13 124.8 17.6 78 249-330 650-736 (818)
454 PRK01156 chromosome segregatio 99.0 1.9E-09 4.2E-14 130.9 10.8 77 230-308 798-883 (895)
455 cd01131 PilT Pilus retraction 98.9 3.5E-09 7.6E-14 105.7 10.5 57 243-308 66-122 (198)
456 PRK06793 fliI flagellum-specif 98.9 4.2E-09 9.1E-14 115.8 10.3 156 109-318 144-306 (432)
457 TIGR03238 dnd_assoc_3 dnd syst 98.9 7.2E-10 1.6E-14 121.7 3.6 53 108-162 18-70 (504)
458 PRK06067 flagellar accessory p 98.9 2E-08 4.3E-13 102.8 13.6 161 111-308 13-186 (234)
459 TIGR02168 SMC_prok_B chromosom 98.9 2.4E-09 5.1E-14 133.4 7.7 76 230-308 1086-1165(1179)
460 cd01125 repA Hexameric Replica 98.8 2.6E-08 5.7E-13 102.3 11.3 136 122-294 1-160 (239)
461 PRK02224 chromosome segregatio 98.8 1.3E-08 2.8E-13 123.5 9.2 78 231-310 779-869 (880)
462 TIGR02169 SMC_prok_A chromosom 98.8 9.7E-09 2.1E-13 128.0 8.2 76 231-309 1072-1151(1164)
463 smart00382 AAA ATPases associa 98.8 2.3E-07 4.9E-12 84.7 15.1 118 121-291 1-124 (148)
464 PRK06995 flhF flagellar biosyn 98.8 2.1E-08 4.5E-13 111.9 9.7 151 110-291 244-400 (484)
465 COG0842 ABC-type multidrug tra 98.7 2.1E-06 4.6E-11 88.7 23.0 167 493-671 116-285 (286)
466 TIGR01420 pilT_fam pilus retra 98.7 9.7E-08 2.1E-12 103.4 11.6 124 119-307 119-242 (343)
467 PRK13891 conjugal transfer pro 98.6 3.4E-07 7.4E-12 110.2 15.0 52 244-295 680-732 (852)
468 TIGR02655 circ_KaiC circadian 98.6 2.6E-09 5.5E-14 120.8 -3.2 166 111-308 9-190 (484)
469 TIGR01248 drrC daunorubicin re 98.6 1.8E-06 4E-11 82.5 15.9 128 490-620 14-145 (152)
470 TIGR03881 KaiC_arch_4 KaiC dom 98.6 2.1E-08 4.5E-13 102.2 1.8 47 111-159 8-57 (229)
471 TIGR00611 recf recF protein. A 98.5 1.1E-07 2.4E-12 103.7 7.2 59 233-294 275-342 (365)
472 cd01130 VirB11-like_ATPase Typ 98.5 2E-07 4.4E-12 92.1 7.7 84 111-195 14-100 (186)
473 PRK14079 recF recombination pr 98.5 1.8E-07 3.8E-12 101.6 7.8 77 233-317 263-348 (349)
474 PRK07196 fliI flagellum-specif 98.5 1.2E-07 2.6E-12 104.6 6.0 85 109-194 143-239 (434)
475 TIGR01026 fliI_yscN ATPase Fli 98.5 6.6E-07 1.4E-11 99.4 11.4 174 109-321 151-346 (440)
476 COG0419 SbcC ATPase involved i 98.4 5.9E-07 1.3E-11 109.3 10.6 78 230-309 812-897 (908)
477 PRK05399 DNA mismatch repair p 98.4 4.1E-07 9E-12 109.2 8.9 137 110-303 596-738 (854)
478 cd02023 UMPK Uridine monophosp 98.4 2.1E-07 4.4E-12 92.7 5.0 112 124-266 1-113 (198)
479 PLN03210 Resistant to P. syrin 98.4 1.4E-06 3.1E-11 108.5 11.8 162 115-330 200-365 (1153)
480 PRK06002 fliI flagellum-specif 98.3 1.4E-06 3E-11 96.3 9.0 67 109-177 153-230 (450)
481 PRK09825 idnK D-gluconate kina 98.3 4E-07 8.7E-12 89.2 3.7 66 121-191 2-70 (176)
482 TIGR02680 conserved hypothetic 98.3 1.3E-06 2.8E-11 109.7 7.5 60 231-293 1245-1316(1353)
483 PRK13898 type IV secretion sys 98.2 3.5E-05 7.6E-10 92.7 18.0 49 247-295 638-687 (800)
484 cd01122 GP4d_helicase GP4d_hel 98.2 3.4E-05 7.3E-10 80.6 15.5 37 109-145 17-53 (271)
485 PRK13873 conjugal transfer ATP 98.2 4.7E-05 1E-09 91.7 18.8 48 248-295 632-680 (811)
486 TIGR03518 ABC_perm_GldF glidin 98.2 0.001 2.2E-08 68.6 26.0 152 496-668 72-240 (240)
487 PRK06315 type III secretion sy 98.2 3.7E-06 8E-11 93.1 8.3 109 109-219 152-277 (442)
488 PRK01889 GTPase RsgA; Reviewed 98.1 5.1E-06 1.1E-10 90.5 7.3 106 112-224 185-291 (356)
489 cd00009 AAA The AAA+ (ATPases 98.1 1.7E-05 3.7E-10 73.0 9.1 55 239-294 72-131 (151)
490 PF13555 AAA_29: P-loop contai 98.1 4.3E-06 9.4E-11 67.1 4.3 37 112-148 12-49 (62)
491 PRK00454 engB GTP-binding prot 98.1 5.1E-05 1.1E-09 74.7 12.6 67 208-282 126-195 (196)
492 TIGR00416 sms DNA repair prote 98.0 1.2E-05 2.7E-10 90.1 9.0 62 250-311 169-247 (454)
493 PF13558 SbcCD_C: Putative exo 98.0 1.1E-05 2.3E-10 70.3 6.5 48 231-278 30-90 (90)
494 TIGR00235 udk uridine kinase. 98.0 2E-06 4.4E-11 86.4 2.1 28 120-147 4-31 (207)
495 PRK09270 nucleoside triphospha 98.0 6.3E-06 1.4E-10 84.2 5.6 74 119-194 30-107 (229)
496 PRK03846 adenylylsulfate kinas 98.0 3.5E-06 7.5E-11 84.1 3.3 56 120-175 22-77 (198)
497 TIGR02903 spore_lon_C ATP-depe 98.0 1.6E-05 3.5E-10 92.5 9.0 110 122-278 175-291 (615)
498 PRK10078 ribose 1,5-bisphospho 98.0 6.9E-06 1.5E-10 81.1 5.1 37 122-162 2-38 (186)
499 PF00488 MutS_V: MutS domain V 97.9 0.00022 4.8E-09 73.2 15.4 46 249-294 120-167 (235)
500 COG1682 TagG ABC-type polysacc 97.9 0.0029 6.2E-08 66.1 23.6 233 414-671 16-258 (263)
No 1
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=9e-106 Score=927.33 Aligned_cols=594 Identities=41% Similarity=0.750 Sum_probs=488.4
Q ss_pred CCceeEEEEeEEEEEecccCcCCCCCcchhhh--hhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHH
Q 044602 65 PLPIFLKFEDVEYKVRINKAASDSNPVKSVVS--KVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIV 142 (674)
Q Consensus 65 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L 142 (674)
..++.++|.|++|+++................ ...++++..++++++|+|+|+++++||++||+||||||||||||+|
T Consensus 35 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iL 114 (659)
T PLN03211 35 CYPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNAL 114 (659)
T ss_pred CCceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHH
Confidence 35789999999999865421100010000000 0112233334457899999999999999999999999999999999
Q ss_pred HcCCCCC-CccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 044602 143 GGRLTDD-VKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC 221 (674)
Q Consensus 143 ~G~~~~~-~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 221 (674)
+|+.++. .+|+|.+||+++....++++|||+|++.+++.+||+||+.|++.++.+...+++++.++++++++.+||.++
T Consensus 115 aG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 194 (659)
T PLN03211 115 AGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKC 194 (659)
T ss_pred hCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh
Confidence 9987542 589999999998665667899999999999999999999999877765555666677889999999999999
Q ss_pred ccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhc
Q 044602 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMF 301 (674)
Q Consensus 222 ~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~ 301 (674)
.|+.+|+...++||||||||++||++|+.+|+||+|||||+|||+.++..+++.|++++++|+|||+++|||+.++.++|
T Consensus 195 ~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~ 274 (659)
T PLN03211 195 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274 (659)
T ss_pred cCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhh
Confidence 99999998889999999999999999999999999999999999999999999999999889999999999987789999
Q ss_pred CEEEEEeCCEEEEecChhHHHHHHHhCCCCCCCCCChhHHHHHhhcCCcccCCchhhhhcCCCCCchHHHHHHHHHHHhh
Q 044602 302 DKLLLISEGYPVYYGKARESMEYFSSLGFIPEIAMNPAEFLLDLATGQVTDISVPEALSASQGASDSEVLKYLQLKYKTQ 381 (674)
Q Consensus 302 D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 381 (674)
|++++|++|++++.|+++++.+||+++|++||.+.|||||++|+++.+.......+ .......+.+.+.|++.
T Consensus 275 D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~ 347 (659)
T PLN03211 275 DSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSE-------REKPNVKQSLVASYNTL 347 (659)
T ss_pred ceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccCCCccc-------cccchHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999875321100000 00111223344455432
Q ss_pred cChhhHhhhhc--cCCCchhh-----hhhh-hccCCccCCHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHh
Q 044602 382 LEPKEKEEHHR--NKKIPEHL-----QLAI-QVKKDWTLSWWDQFHIISRRTFRERWRDYFDKLRLVQALGVAVVLGLLW 453 (674)
Q Consensus 382 ~~~~~~~~~~~--~~~~~~~~-----~~~~-~~~~~~~~s~~~Q~~~L~~R~~~~~r~~~~~~~r~~~~i~~all~G~lf 453 (674)
..+......+. ........ .... ..+..+..+||+|+.+|++|+++++||+.+...|+++++++|+++|++|
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~r~~~~~~~r~~~~i~~~ll~G~lf 427 (659)
T PLN03211 348 LAPKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKERKHESFNTLRVFQVIAAALLAGLMW 427 (659)
T ss_pred ccHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Confidence 22211111100 00000000 0000 0112356789999999999999998888888899999999999999999
Q ss_pred cCCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHhhh
Q 044602 454 WKSQSTTEAQLRDQVGLIFYICIFWTSSSIFGAVYVFPFEKIYLVKERKADMYRLSVYYVCSTLCDMVAHVFYPTIFMVI 533 (674)
Q Consensus 454 ~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~~i~~f~~er~v~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i 533 (674)
|+++ +.++++|.|++||+++++++.+++++++.|+.||++|+|||.+|+|++++|++|++++|+|+.++.+++|++|
T Consensus 428 ~~~~---~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i 504 (659)
T PLN03211 428 WHSD---FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTV 504 (659)
T ss_pred hcCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9985 3689999999999999988888889999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcccCCChhhhHhhHhhcHH
Q 044602 534 VYFMAGFKRTVPCFFLTLFAILLVAITSQGAGELFGAAVLSIKRAGMIASLILMLFLLTGGYYVQHIPKFMQWLKYLSFL 613 (674)
Q Consensus 534 ~Y~m~gl~~~~~~F~~f~~~~~l~~~~~~s~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~ip~~~~Wl~yiSp~ 613 (674)
+|||+||++++.+||+|+++++++.++++++|+++++++|+..+|+.+++++++++++|+||++++||+||+|++|+||+
T Consensus 505 ~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~~ip~~~~W~~ylS~~ 584 (659)
T PLN03211 505 TYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVHKLPSCMAWIKYISTT 584 (659)
T ss_pred eeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHhhchHHHHHHHHhCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcc--c---------CCCCCC-----CCC--CccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHh
Q 044602 614 YYGFRLLLKP--R---------GCRNLQ-----SSP--SFDTVNLSGGLQEVWVLLGMALAYRLCAYFCLRKR 668 (674)
Q Consensus 614 ~Ya~eal~~n--~---------gc~~~~-----~~~--~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~L~~~ 668 (674)
+||||+++.| . +|.... .+. .....+..+.|.|+++|++++++||+++|++|+++
T Consensus 585 ~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~ 657 (659)
T PLN03211 585 FYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVEEDVAGQISPATSVSVLIFMFVGYRLLAYLALRRI 657 (659)
T ss_pred HHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccchhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999 2 253210 011 11222334689999999999999999999999853
No 2
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.1e-104 Score=905.98 Aligned_cols=572 Identities=40% Similarity=0.688 Sum_probs=492.9
Q ss_pred CCCceeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHH
Q 044602 64 RPLPIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVG 143 (674)
Q Consensus 64 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~ 143 (674)
...++.++|+|+++..+.+. ...+++|+|||++++|||++|||||||||||||||+|+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~----------------------~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~La 77 (613)
T KOG0061|consen 20 YLEPVKLSFRNLTLSSKEKS----------------------KKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALA 77 (613)
T ss_pred ccccceeEEEEEEEEecCCC----------------------CccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHh
Confidence 34567899999999776421 12478999999999999999999999999999999999
Q ss_pred cCCCC--CCccEEEECCEeCCh-hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc
Q 044602 144 GRLTD--DVKGNITYNDIPYNP-ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER 220 (674)
Q Consensus 144 G~~~~--~~~G~I~~~g~~~~~-~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 220 (674)
|+..+ ..+|+|++||++.+. .+++.+|||.|||.++|+|||+|+|.|++.+|+|...++++++++|+++++++||.+
T Consensus 78 gr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~ 157 (613)
T KOG0061|consen 78 GRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEK 157 (613)
T ss_pred ccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChh
Confidence 99864 579999999977654 688999999999999999999999999999999998899999999999999999999
Q ss_pred cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhh
Q 044602 221 CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHM 300 (674)
Q Consensus 221 ~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~ 300 (674)
++|+++|+...|++||||||||+||.+|++||+||+|||||||||+.++.++++.|+++|++|+|||+++|||+.+++++
T Consensus 158 ~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~l 237 (613)
T KOG0061|consen 158 CADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFEL 237 (613)
T ss_pred hccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHH
Confidence 99999999888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCEEEEEeCCEEEEecChhHHHHHHHhCCCCCCCCCChhHHHHHhhcCCcccCCchhhhhcCCCCCchHHHHHHHHHHHh
Q 044602 301 FDKLLLISEGYPVYYGKARESMEYFSSLGFIPEIAMNPAEFLLDLATGQVTDISVPEALSASQGASDSEVLKYLQLKYKT 380 (674)
Q Consensus 301 ~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 380 (674)
||++++|++|+++|+|+++++.+||++.|++||++.||+||++|+++.+ +... + ..+..........++.
T Consensus 238 FD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~l~l~s~~--~~~~-~-------~~~~~~~~~~~~~~~~ 307 (613)
T KOG0061|consen 238 FDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFLLDLLSVD--SGTR-E-------LEEAVRIAKLINKFSQ 307 (613)
T ss_pred HhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHHHHHHccC--CCch-h-------HHhHHHHHHHhhhccc
Confidence 9999999999999999999999999999999999999999999999853 1000 0 0000111111111111
Q ss_pred hcChhhHhhhhccCCCchhhhhhhhccCCccCCHHHHHHHHHHHHHHHh-hcchhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 044602 381 QLEPKEKEEHHRNKKIPEHLQLAIQVKKDWTLSWWDQFHIISRRTFRER-WRDYFDKLRLVQALGVAVVLGLLWWKSQST 459 (674)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~-r~~~~~~~r~~~~i~~all~G~lf~~~~~~ 459 (674)
.....+...... .........+.....+||.|+++|++|.+++. |++.+...|+++.+++|+++|.+||+++.+
T Consensus 308 --~~~~~~~~~~~~---~~~~~~~~~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~ 382 (613)
T KOG0061|consen 308 --TDNLKKTLEALE---KSLSTSKKVEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGND 382 (613)
T ss_pred --cchhhhhHHHHh---hhcccccccccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCc
Confidence 000000000000 00000000011116899999999999999995 556778899999999999999999999875
Q ss_pred ChHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhhhhccC
Q 044602 460 TEAQLRDQVGLIFYICIFWTSSSIFGAVYVFPFEKIYLVKERKADMYRLSVYYVCSTLCDMVAHVFYPTIFMVIVYFMAG 539 (674)
Q Consensus 460 ~~~~~~~~~g~lff~~~~~~~~~~~~~i~~f~~er~v~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~m~g 539 (674)
..++++|.|++||.+.++.+.+++++++.|++||++|.||+.+|+|+.++||+|++++++|+.++.+++|++|+|||+|
T Consensus 383 -~~~~~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~g 461 (613)
T KOG0061|consen 383 -AKGIQNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVG 461 (613)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcc
Confidence 4688899999999999998999889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcccC--CChhhhHhhHhhcHHHHHH
Q 044602 540 FKRTVPCFFLTLFAILLVAITSQGAGELFGAAVLSIKRAGMIASLILMLFLLTGGYYVQ--HIPKFMQWLKYLSFLYYGF 617 (674)
Q Consensus 540 l~~~~~~F~~f~~~~~l~~~~~~s~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Ya~ 617 (674)
++++..+|++|++++++..++++++++++++++|+...|+.+++++++++++|+||+++ +||.||+|++|+||++|+|
T Consensus 462 l~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~ 541 (613)
T KOG0061|consen 462 LNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAF 541 (613)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred HHhhcc--c----CCCCCC-------CCCCccccCC--CCchHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 044602 618 RLLLKP--R----GCRNLQ-------SSPSFDTVNL--SGGLQEVWVLLGMALAYRLCAYFCLRKRINKCH 673 (674)
Q Consensus 618 eal~~n--~----gc~~~~-------~~~~~~~~~~--~~~~~~~~il~~~~~~~~~l~~~~L~~~~~~~~ 673 (674)
|+++.| . .|...+ +...++..++ .+.|.|++++++++++||+++|++|++|.+++.
T Consensus 542 e~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~~ 612 (613)
T KOG0061|consen 542 EALLINQFSGGSSRCFLSGNLCCESTGEDVLKQLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKRKR 612 (613)
T ss_pred HHHHHHHhhccccccccCcCCcccccHHHHHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 999999 2 143211 1112344454 678999999999999999999999999998753
No 3
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=3.7e-100 Score=879.70 Aligned_cols=554 Identities=32% Similarity=0.582 Sum_probs=475.8
Q ss_pred ccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC--CccEEEECCEeCCh-hccccEEEEccCCCCCCCCC
Q 044602 107 DYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD--VKGNITYNDIPYNP-ALKRRIGFVTQDDVLLPQLT 183 (674)
Q Consensus 107 ~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~--~~G~I~~~g~~~~~-~~~~~igyv~Q~~~l~~~lT 183 (674)
+.+++|+|+|+++++||++||+|||||||||||++|+|+.++. .+|+|.+||.+++. .+++.+|||+|+|.+++.+|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 3477999999999999999999999999999999999987542 47999999999864 57788999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCc-cCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 044602 184 VEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGF-IKGISGGERKRTSIGYEILVDPSLLLLDEPTS 262 (674)
Q Consensus 184 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~-~~~LSgGerqRv~iA~aL~~~P~illLDEPTs 262 (674)
|+|||.|++.++.+...++++++++++++++.+||.+++|+.+|+.. .++|||||||||+||+||+.+|++++|||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 99999999998887777778888899999999999999999999753 67899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHHHHHHhCCCCCCCCCChhHHH
Q 044602 263 GLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFSSLGFIPEIAMNPAEFL 342 (674)
Q Consensus 263 gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~~~npad~~ 342 (674)
|||+.++..+++.|++++++|+|||+++|||+.+++++||++++|++|+++|.|+++++.+||+++|+.||++.|||||+
T Consensus 196 gLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~ 275 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFY 275 (617)
T ss_pred chhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHH
Confidence 99999999999999999988999999999998889999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCcccCCchhhhhcCCCCCchHHHHHHHHHHHhh-cChhhHhhhhccCCCchhh--hhhhhccCCccCCHHHHHH
Q 044602 343 LDLATGQVTDISVPEALSASQGASDSEVLKYLQLKYKTQ-LEPKEKEEHHRNKKIPEHL--QLAIQVKKDWTLSWWDQFH 419 (674)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~s~~~Q~~ 419 (674)
+++++.+..+. ....+..+.+.+.|++. ......+............ ........++..+|++|+.
T Consensus 276 ~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~ 344 (617)
T TIGR00955 276 VQVLAVIPGSE-----------NESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFY 344 (617)
T ss_pred HHHhhcCcccc-----------cchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHH
Confidence 99987432110 00112223334444332 1111111111000000000 0000112456789999999
Q ss_pred HHHHHHHHHh-hcchhHHHHHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 044602 420 IISRRTFRER-WRDYFDKLRLVQALGVAVVLGLLWWKSQSTTEAQLRDQVGLIFYICIFWTSSSIFGAVYVFPFEKIYLV 498 (674)
Q Consensus 420 ~L~~R~~~~~-r~~~~~~~r~~~~i~~all~G~lf~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~~i~~f~~er~v~~ 498 (674)
+|++|++++. |++.+...|+++.+++|+++|++||+++.+ ++++++|.|++|++++++++.+++.++..|+.||++|+
T Consensus 345 ~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~-~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~ 423 (617)
T TIGR00955 345 ALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLT-QKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFL 423 (617)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999985 555677889999999999999999999884 57999999999999999888888888999999999999
Q ss_pred HHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Q 044602 499 KERKADMYRLSVYYVCSTLCDMVAHVFYPTIFMVIVYFMAGFKRTVPCFFLTLFAILLVAITSQGAGELFGAAVLSIKRA 578 (674)
Q Consensus 499 rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~m~gl~~~~~~F~~f~~~~~l~~~~~~s~~~~i~a~~~~~~~A 578 (674)
||+.+|+|++++|++|++++|+|+.++.+++|++|+|||+|+++++.+||.|+++++++.++++++|+++++++|+..+|
T Consensus 424 rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a 503 (617)
T TIGR00955 424 RETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMA 503 (617)
T ss_pred HhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccC--CChhhhHhhHhhcHHHHHHHHhhcc--cC-----CCCCC---CCC-----CccccCC-
Q 044602 579 GMIASLILMLFLLTGGYYVQ--HIPKFMQWLKYLSFLYYGFRLLLKP--RG-----CRNLQ---SSP-----SFDTVNL- 640 (674)
Q Consensus 579 ~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Ya~eal~~n--~g-----c~~~~---~~~-----~~~~~~~- 640 (674)
+.+++++++++++|+||+++ +||+||+|++|+||++|++|+++.| .| |.... .++ .++.+|+
T Consensus 504 ~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~ 583 (617)
T TIGR00955 504 LTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILETLSFR 583 (617)
T ss_pred HHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcChHHHHHhcCCC
Confidence 99999999999999999998 9999999999999999999999999 22 54211 111 2345555
Q ss_pred -CCchHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 044602 641 -SGGLQEVWVLLGMALAYRLCAYFCLRKRINKC 672 (674)
Q Consensus 641 -~~~~~~~~il~~~~~~~~~l~~~~L~~~~~~~ 672 (674)
++.|.|+++|+++.++|++++|++||+|.++.
T Consensus 584 ~~~~~~~~~il~~~~~~~~~l~~~~L~~~~~~~ 616 (617)
T TIGR00955 584 NADLYLDLIGLVILIFFFRLLAYFALRIRIRRK 616 (617)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 46899999999999999999999999998775
No 4
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.4e-96 Score=906.16 Aligned_cols=571 Identities=26% Similarity=0.466 Sum_probs=478.7
Q ss_pred CceeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcC
Q 044602 66 LPIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 66 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.|..+.|+||+|.++.+... ++.+..++.+++|+|||++++|||++||+||||||||||||+|+|+
T Consensus 864 ~~~~~~~~~v~y~v~~~~~~--------------~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~ 929 (1470)
T PLN03140 864 TPLAMSFDDVNYFVDMPAEM--------------KEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGR 929 (1470)
T ss_pred CcceEEEEEEEEEEccCccc--------------cccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCC
Confidence 34579999999999753211 0112223446799999999999999999999999999999999998
Q ss_pred CCC-CCccEEEECCEeCCh-hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 044602 146 LTD-DVKGNITYNDIPYNP-ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRH 223 (674)
Q Consensus 146 ~~~-~~~G~I~~~g~~~~~-~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 223 (674)
.++ +.+|+|.+||++.++ .+++.+|||+|+|.+++.+||+|||.|++.++.+...+++++.++++++++.+||.++.|
T Consensus 930 ~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~ 1009 (1470)
T PLN03140 930 KTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKD 1009 (1470)
T ss_pred CCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhC
Confidence 753 468999999998764 467789999999999999999999999988877666666777788999999999999999
Q ss_pred ccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCE
Q 044602 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDK 303 (674)
Q Consensus 224 ~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 303 (674)
+.+|+..+++|||||||||+||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|||+.++++.||+
T Consensus 1010 ~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~ 1089 (1470)
T PLN03140 1010 AIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1089 (1470)
T ss_pred CccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCE
Confidence 99998777899999999999999999999999999999999999999999999999988999999999999778899999
Q ss_pred EEEEeC-CEEEEecCh----hHHHHHHHhC-CCC-CCCCCChhHHHHHhhcCCcccCCchhhhhcCCCCCchHHHHHHHH
Q 044602 304 LLLISE-GYPVYYGKA----RESMEYFSSL-GFI-PEIAMNPAEFLLDLATGQVTDISVPEALSASQGASDSEVLKYLQL 376 (674)
Q Consensus 304 v~~L~~-G~iv~~G~~----~~~~~~f~~~-g~~-~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 376 (674)
+++|++ |+++|.|++ +++++||+++ |++ ||++.|||||++|+++...... ....+.+
T Consensus 1090 vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~~----------------~~~d~~~ 1153 (1470)
T PLN03140 1090 LLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVK----------------LGIDFAE 1153 (1470)
T ss_pred EEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhccccccc----------------ccchHHH
Confidence 999996 899999996 5899999997 664 9999999999999976321100 0011233
Q ss_pred HHHhh-cChhhHhhhhccCCCchhhhhhhhccCCccCCHHHHHHHHHHHHHHHh-hcchhHHHHHHHHHHHHHHHHHHhc
Q 044602 377 KYKTQ-LEPKEKEEHHRNKKIPEHLQLAIQVKKDWTLSWWDQFHIISRRTFRER-WRDYFDKLRLVQALGVAVVLGLLWW 454 (674)
Q Consensus 377 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~-r~~~~~~~r~~~~i~~all~G~lf~ 454 (674)
.|++. ..+..++........+.. ........++..+||+|+++|++|++++. |++.+...|+++++++|+++|++||
T Consensus 1154 ~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~ 1232 (1470)
T PLN03140 1154 HYKSSSLYQRNKALVKELSTPPPG-ASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFW 1232 (1470)
T ss_pred HHhccHHHHHHHHHHHHhccCCCC-ccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhh
Confidence 34321 111111111111100000 00011134688999999999999999985 5566888999999999999999999
Q ss_pred CCCCCC--hHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHhh
Q 044602 455 KSQSTT--EAQLRDQVGLIFYICIFWTSSSIFGAVYVFPFEKIYLVKERKADMYRLSVYYVCSTLCDMVAHVFYPTIFMV 532 (674)
Q Consensus 455 ~~~~~~--~~~~~~~~g~lff~~~~~~~~~~~~~i~~f~~er~v~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~ 532 (674)
+++++. ..+++++.|++|+++++.++..+.+.++.|..||++|+|||++|+|++++|++|++++|+|+.++.+++|.+
T Consensus 1233 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~ 1312 (1470)
T PLN03140 1233 KVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTL 1312 (1470)
T ss_pred CCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998743 357889999999999998887777778999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcccC--CChhhhHhhHhh
Q 044602 533 IVYFMAGFKRTVPCFFLTLFAILLVAITSQGAGELFGAAVLSIKRAGMIASLILMLFLLTGGYYVQ--HIPKFMQWLKYL 610 (674)
Q Consensus 533 i~Y~m~gl~~~~~~F~~f~~~~~l~~~~~~s~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yi 610 (674)
|+|||+||++++..||+|+++++++.++++++|+++++++|+.++|..+++++++++++|+||++| +||+||+|++|+
T Consensus 1313 i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~i 1392 (1470)
T PLN03140 1313 IVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWI 1392 (1470)
T ss_pred HHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999999999999999999998 999999999999
Q ss_pred cHHHHHHHHhhcc--cC----CCCCCC---CC----CccccCC--CCchHHHHHHHHHHHHHHHHHHHHHHH
Q 044602 611 SFLYYGFRLLLKP--RG----CRNLQS---SP----SFDTVNL--SGGLQEVWVLLGMALAYRLCAYFCLRK 667 (674)
Q Consensus 611 Sp~~Ya~eal~~n--~g----c~~~~~---~~----~~~~~~~--~~~~~~~~il~~~~~~~~~l~~~~L~~ 667 (674)
||++|++++++.| .| |...+. .. ..+.+|+ ++.|++++++++++++|++++++++++
T Consensus 1393 sp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~~~~ 1464 (1470)
T PLN03140 1393 CPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAFCIRT 1464 (1470)
T ss_pred CHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhcCcCcccccchhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 33 432221 11 1344554 467999999999999999999999986
No 5
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=4.1e-96 Score=904.94 Aligned_cols=595 Identities=23% Similarity=0.384 Sum_probs=477.5
Q ss_pred CceeEEEEeEEEEEecccCcCCCCCcchh-hhh---hhccc--ccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHH
Q 044602 66 LPIFLKFEDVEYKVRINKAASDSNPVKSV-VSK---VASQL--SLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLL 139 (674)
Q Consensus 66 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~-~~~---~~~~~--~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl 139 (674)
..+.+.|+|++........... ....+. ... ..... .-.+..+++|+|+|+++++||+++|+|||||||||||
T Consensus 26 ~~~~v~~~~l~v~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLL 104 (1394)
T TIGR00956 26 YKLGVAYKNLSAYGVAADSDYQ-PTFPNALLKILTRGFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLL 104 (1394)
T ss_pred CeeeEEEECCEEEEEecccccc-CchHHHHHHHHHHHHHHhcccCCCCcceeeeCCEEEEECCEEEEEECCCCCCHHHHH
Confidence 4678999999987732211101 111000 000 00001 1112346799999999999999999999999999999
Q ss_pred HHHHcCCC---CCCccEEEECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCC----CCCHHHHHHH-
Q 044602 140 KIVGGRLT---DDVKGNITYNDIPYNP---ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPG----NMNRQQKYAR- 208 (674)
Q Consensus 140 ~~L~G~~~---~~~~G~I~~~g~~~~~---~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~----~~~~~~~~~~- 208 (674)
|+|+|+.. .+.+|+|.+||+++.+ ..++.++||+|+|.+++.+||+|||.|++.++.+. ..++++..++
T Consensus 105 k~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~ 184 (1394)
T TIGR00956 105 KTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHI 184 (1394)
T ss_pred HHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHH
Confidence 99999863 3469999999998753 35667999999999999999999999998876543 2344444444
Q ss_pred HHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEE
Q 044602 209 VQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVI 287 (674)
Q Consensus 209 v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi 287 (674)
++++++.+||.++.|++||++.+++|||||||||+||++|+.+|+|++|||||+|||+.++..+++.|++++++ |+|||
T Consensus 185 ~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvi 264 (1394)
T TIGR00956 185 ADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPL 264 (1394)
T ss_pred HHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 47789999999999999999999999999999999999999999999999999999999999999999999874 99999
Q ss_pred EEecCCchHHHhhcCEEEEEeCCEEEEecChhHHHHHHHhCCCCCCCCCChhHHHHHhhcCCcccCCchhhhhcCCCCCc
Q 044602 288 TTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFSSLGFIPEIAMNPAEFLLDLATGQVTDISVPEALSASQGASD 367 (674)
Q Consensus 288 ~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (674)
+++|||+++++++||+|++|++|+++++|+++++.+||+++|+.||++.|||||++++++.+.... .+..... .
T Consensus 265 i~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~~~-~~~~e~~-----~ 338 (1394)
T TIGR00956 265 VAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAERQI-KPGYEKK-----V 338 (1394)
T ss_pred EEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHhccChhhhhc-ccccccc-----C
Confidence 999999888999999999999999999999999999999999999999999999999987532110 0000000 0
Q ss_pred hHHHHHHHHHHHhhc-ChhhHhhhhccC----C-Cc-h-----hhh---hhhhccCCccCCHHHHHHHHHHHHHHHhh-c
Q 044602 368 SEVLKYLQLKYKTQL-EPKEKEEHHRNK----K-IP-E-----HLQ---LAIQVKKDWTLSWWDQFHIISRRTFRERW-R 431 (674)
Q Consensus 368 ~~~~~~l~~~~~~~~-~~~~~~~~~~~~----~-~~-~-----~~~---~~~~~~~~~~~s~~~Q~~~L~~R~~~~~r-~ 431 (674)
+...+.+.+.|++.. .+...++.+... . .. + ... ......+++..|||+|+++|++|++++.+ +
T Consensus 339 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd 418 (1394)
T TIGR00956 339 PRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGN 418 (1394)
T ss_pred CCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcC
Confidence 111223344443311 111111111000 0 00 0 000 01112346788999999999999999865 4
Q ss_pred chhHHHHHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHhcCCCCchHHH
Q 044602 432 DYFDKLRLVQALGVAVVLGLLWWKSQSTTEAQLRDQVGLIFYICIFWTSSSIFGAVYVFPFEKIYLVKERKADMYRLSVY 511 (674)
Q Consensus 432 ~~~~~~r~~~~i~~all~G~lf~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~~i~~f~~er~v~~rE~~~g~Y~~~ay 511 (674)
+.....|+++.+++|+++|++||+++.+ ++++++|.|++||++++.++.++ ..+..++.||++|+|||.+++|++++|
T Consensus 419 ~~~~~~r~~~~ii~~li~G~~F~~~~~~-~~~~~~r~g~lf~~~~~~~~~~~-~~i~~~~~eR~i~~re~~~~~Y~~~ay 496 (1394)
T TIGR00956 419 PSFTLFMVFGNIIMALILSSVFYNLPKN-TSDFYSRGGALFFAILFNAFSSL-LEIASMYEARPIVEKHRKYALYHPSAD 496 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCC-chhHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCcceeeeccccccCHHHH
Confidence 5577899999999999999999999985 46999999999999999888775 557777789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 044602 512 YVCSTLCDMVAHVFYPTIFMVIVYFMAGFKRTVPCFFLTLFAILLVAITSQGAGELFGAAVLSIKRAGMIASLILMLFLL 591 (674)
Q Consensus 512 ~la~~l~~lp~~~~~~~if~~i~Y~m~gl~~~~~~F~~f~~~~~l~~~~~~s~~~~i~a~~~~~~~A~~~~~~~~~~~~l 591 (674)
++|++++|+|+.++.+++|++|+|||+||++++++||+|+++++++.++++++++++++++|+..+|+.+++++++++++
T Consensus 497 ~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~l 576 (1394)
T TIGR00956 497 AIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSI 576 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccC--CChhhhHhhHhhcHHHHHHHHhhcc--cC----CCC---C-----------CCC------CC---------
Q 044602 592 TGGYYVQ--HIPKFMQWLKYLSFLYYGFRLLLKP--RG----CRN---L-----------QSS------PS--------- 634 (674)
Q Consensus 592 f~Gf~i~--~ip~~~~Wl~yiSp~~Ya~eal~~n--~g----c~~---~-----------~~~------~~--------- 634 (674)
|+||++| +||+||+|++|+||++|||||++.| .| |.. . +.+ |+
T Consensus 577 f~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~ 656 (1394)
T TIGR00956 577 YTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDY 656 (1394)
T ss_pred HcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHH
Confidence 9999998 9999999999999999999999999 32 741 0 001 11
Q ss_pred cc-ccC--CCCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044602 635 FD-TVN--LSGGLQEVWVLLGMALAYRLCAYFCLRKRI 669 (674)
Q Consensus 635 ~~-~~~--~~~~~~~~~il~~~~~~~~~l~~~~L~~~~ 669 (674)
++ .++ .++.|+|+++|++++++|++++++++.+..
T Consensus 657 L~~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~ 694 (1394)
T TIGR00956 657 LKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNK 694 (1394)
T ss_pred HHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 11 223 357899999999999999999999998854
No 6
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=2e-95 Score=896.09 Aligned_cols=599 Identities=24% Similarity=0.369 Sum_probs=474.8
Q ss_pred CCceeEEEEeEEEEEecccCcCCCCCcchh-hh---hhhc--ccccc-cccccceeeeEEEEeCCeEEEEEcCCCCcHHH
Q 044602 65 PLPIFLKFEDVEYKVRINKAASDSNPVKSV-VS---KVAS--QLSLD-KDYKHILKGITGSICPGEILALMGPSGSGKTT 137 (674)
Q Consensus 65 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~-~~---~~~~--~~~~~-~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKST 137 (674)
.+.+.++|+||++..........-.+..+. .. .... ....+ +..++||+|+|+.++|||+++|+|||||||||
T Consensus 127 ~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKST 206 (1470)
T PLN03140 127 LPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTT 206 (1470)
T ss_pred CCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCccceeccCCeEEEeCCeEEEEEcCCCCCHHH
Confidence 345789999999877632211111111111 11 0110 10011 12467999999999999999999999999999
Q ss_pred HHHHHHcCCCCC--CccEEEECCEeCCh-hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCC-------CCCHHHH--
Q 044602 138 LLKIVGGRLTDD--VKGNITYNDIPYNP-ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPG-------NMNRQQK-- 205 (674)
Q Consensus 138 Ll~~L~G~~~~~--~~G~I~~~g~~~~~-~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~-------~~~~~~~-- 205 (674)
|||+|+|++++. .+|+|.+||+++++ ..++.++||+|+|.+++.+||+|||.|+++++.+. +..++++
T Consensus 207 LLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~ 286 (1470)
T PLN03140 207 LLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDA 286 (1470)
T ss_pred HHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhc
Confidence 999999988542 38999999998864 34678999999999999999999999998765321 1112211
Q ss_pred ----------------------HHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 044602 206 ----------------------YARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSG 263 (674)
Q Consensus 206 ----------------------~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsg 263 (674)
...++++++.+||++++||.||+..+++|||||||||+||++|+.+|++++|||||+|
T Consensus 287 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsG 366 (1470)
T PLN03140 287 GIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTG 366 (1470)
T ss_pred cCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcC
Confidence 1235789999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHh-CCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHHHHHHhCCCCCCCCCChhHHH
Q 044602 264 LDSTSANKLIQVLQKVAK-AGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFSSLGFIPEIAMNPAEFL 342 (674)
Q Consensus 264 LD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~~~npad~~ 342 (674)
||+.++.++++.|+++++ .|+|+|+++|||+++++++||+|++|++|+++|+|+++++.+||+++||.||++.|||||+
T Consensus 367 LDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl 446 (1470)
T PLN03140 367 LDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFL 446 (1470)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHcCCCCCCCCChHHHH
Confidence 999999999999999987 4899999999998889999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCcccCCchhhhhcCCCCCchHHHHHHHHHHHhh-cChhhHhhhhccCCCchhhhhhhhccCCccCCHHHHHHHH
Q 044602 343 LDLATGQVTDISVPEALSASQGASDSEVLKYLQLKYKTQ-LEPKEKEEHHRNKKIPEHLQLAIQVKKDWTLSWWDQFHII 421 (674)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L 421 (674)
+++++.+..... .. ...........+.+.++|++. ......++....... ..........++|..++|.|++.|
T Consensus 447 ~~v~s~~~~~~~--~~--~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~-~~~~~~~~~~~~y~~s~~~q~~~~ 521 (1470)
T PLN03140 447 QEVTSKKDQEQY--WA--DRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDK-SQSHKAALVFSKYSVPKMELLKAC 521 (1470)
T ss_pred HHhcCchhhhhh--hh--ccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhh-hhcccccccCCCCcCCHHHHHHHH
Confidence 999875211110 00 000000001123455555542 111111111110000 000011112456889999999999
Q ss_pred HHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHHhcCCCCCC--hHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 044602 422 SRRTFRERWRD-YFDKLRLVQALGVAVVLGLLWWKSQSTT--EAQLRDQVGLIFYICIFWTSSSIFGAVYVFPFEKIYLV 498 (674)
Q Consensus 422 ~~R~~~~~r~~-~~~~~r~~~~i~~all~G~lf~~~~~~~--~~~~~~~~g~lff~~~~~~~~~~~~~i~~f~~er~v~~ 498 (674)
++|++++.+|+ ..+..|+++.+++|+++|++||+++.+. ..+.+.+.|++||++++.++.+ +..+..++.||+||+
T Consensus 522 ~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~-~~~l~~~~~~r~vf~ 600 (1470)
T PLN03140 522 WDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNG-FAELALMIQRLPVFY 600 (1470)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccchhH
Confidence 99999986554 5678899999999999999999997531 2356778899999988886655 577899999999999
Q ss_pred HHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Q 044602 499 KERKADMYRLSVYYVCSTLCDMVAHVFYPTIFMVIVYFMAGFKRTVPCFFLTLFAILLVAITSQGAGELFGAAVLSIKRA 578 (674)
Q Consensus 499 rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~m~gl~~~~~~F~~f~~~~~l~~~~~~s~~~~i~a~~~~~~~A 578 (674)
|||..++|++++|++|++++++|+.++.+++|++|+|||+||++++++||+|+++++++.++++++++++++++|++.+|
T Consensus 601 ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A 680 (1470)
T PLN03140 601 KQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIA 680 (1470)
T ss_pred HhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccC--CChhhhHhhHhhcHHHHHHHHhhcc--cC-------CCCCCCCC---CccccCCC--C
Q 044602 579 GMIASLILMLFLLTGGYYVQ--HIPKFMQWLKYLSFLYYGFRLLLKP--RG-------CRNLQSSP---SFDTVNLS--G 642 (674)
Q Consensus 579 ~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Ya~eal~~n--~g-------c~~~~~~~---~~~~~~~~--~ 642 (674)
+.+++++++++++|+||+++ +||+||+|++|+||++|||||++.| .+ |....... .++.+|+. +
T Consensus 681 ~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~ 760 (1470)
T PLN03140 681 NTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLNIFDVFTDK 760 (1470)
T ss_pred HHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHHHhcCcCccc
Confidence 99999999999999999998 9999999999999999999999999 22 11111111 23445543 3
Q ss_pred --chHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044602 643 --GLQEVWVLLGMALAYRLCAYFCLRKRI 669 (674)
Q Consensus 643 --~~~~~~il~~~~~~~~~l~~~~L~~~~ 669 (674)
.|+|+++|++++++|+++++++|++..
T Consensus 761 ~~~w~~~~iL~~~~v~f~~l~~l~L~~~~ 789 (1470)
T PLN03140 761 NWYWIGVGALLGFTILFNVLFTLALTYLN 789 (1470)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 489999999999999999999998754
No 7
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.1e-93 Score=883.36 Aligned_cols=544 Identities=26% Similarity=0.408 Sum_probs=456.2
Q ss_pred cccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC--CCccEEEECCEeCChhccccEEEEccCCCCCCCCCHH
Q 044602 108 YKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD--DVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVE 185 (674)
Q Consensus 108 ~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~--~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~ 185 (674)
.+.+|+|||++++|||++||+||||||||||||+|+|+.++ +.+|+|.+||+++...+++.+|||+|+|.+++.+||+
T Consensus 775 ~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~ 854 (1394)
T TIGR00956 775 KRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVR 854 (1394)
T ss_pred CcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHH
Confidence 36799999999999999999999999999999999998852 4679999999998766788999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCC-EEEEeCCCCCC
Q 044602 186 ETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPS-LLLLDEPTSGL 264 (674)
Q Consensus 186 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~-illLDEPTsgL 264 (674)
|||.|++.++.+...+++++.++++++++.+||.+++|+.+|+.. .+|||||||||+||+||+.+|+ ||+||||||||
T Consensus 855 E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~-~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgL 933 (1394)
T TIGR00956 855 ESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPG-EGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGL 933 (1394)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCC-CCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCC
Confidence 999999988876666677777899999999999999999998644 3799999999999999999997 99999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCC-EEEEecCh----hHHHHHHHhCCC-CCCCCCCh
Q 044602 265 DSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEG-YPVYYGKA----RESMEYFSSLGF-IPEIAMNP 338 (674)
Q Consensus 265 D~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G-~iv~~G~~----~~~~~~f~~~g~-~~~~~~np 338 (674)
|+.++..+++.|++++++|+|||+++|||+..+++.||++++|++| +++|.|++ +++++||++.|+ +||++.||
T Consensus 934 D~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~~yf~~~G~~~~p~~~Np 1013 (1394)
T TIGR00956 934 DSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKHGAPKCPEDANP 1013 (1394)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHHHHHHhcCCCCCCCCCCH
Confidence 9999999999999998889999999999997778899999999987 99999997 578999999996 89999999
Q ss_pred hHHHHHhhcCCcccCCchhhhhcCCCCCchHHHHHHHHHHHhh-cChhhHhhhhccCCCch--hhhhhhhccCCccCCHH
Q 044602 339 AEFLLDLATGQVTDISVPEALSASQGASDSEVLKYLQLKYKTQ-LEPKEKEEHHRNKKIPE--HLQLAIQVKKDWTLSWW 415 (674)
Q Consensus 339 ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~s~~ 415 (674)
|||++|+++....+. ..+.+.+.|+.. ......++.+....... .........++++.|||
T Consensus 1014 Ad~~ldvi~~~~~~~----------------~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 1077 (1394)
T TIGR00956 1014 AEWMLEVIGAAPGAH----------------ANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLW 1077 (1394)
T ss_pred HHHHHHHhhcccccc----------------hhccHHHHHhcCHHHHHHHHHHHHhhcccccCccccccccccccCCCHH
Confidence 999999987421110 001122233221 11111111110000000 00000111246789999
Q ss_pred HHHHHHHHHHHHHh-hcchhHHHHHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 044602 416 DQFHIISRRTFRER-WRDYFDKLRLVQALGVAVVLGLLWWKSQSTTEAQLRDQVGLIFYICIFWTSSSIFGAVYVFPFEK 494 (674)
Q Consensus 416 ~Q~~~L~~R~~~~~-r~~~~~~~r~~~~i~~all~G~lf~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~~i~~f~~er 494 (674)
+|+++|++|++++. |++.+...|+++++++|+++|++||+++++ +.++++|+|++|+++++..+. +...++.|+.||
T Consensus 1078 ~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~-~~~i~~~~g~~f~~~~~~~~~-~~~~~~~f~~~r 1155 (1394)
T TIGR00956 1078 YQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTS-LQGLQNQMFAVFMATVLFNPL-IQQYLPPFVAQR 1155 (1394)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHH
Confidence 99999999999985 556678899999999999999999999984 579999999999988876554 456788898988
Q ss_pred hHH-HHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCHHH-------HHHHHHHHHHHHHHHHHHHH
Q 044602 495 IYL-VKERKADMYRLSVYYVCSTLCDMVAHVFYPTIFMVIVYFMAGFKRTVPC-------FFLTLFAILLVAITSQGAGE 566 (674)
Q Consensus 495 ~v~-~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~m~gl~~~~~~-------F~~f~~~~~l~~~~~~s~~~ 566 (674)
.+| +|||.+|+|++++|++|++++|+|+.++.+++|.+|+|||+||++++.. |++|+++++++.++++++|+
T Consensus 1156 ~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~ 1235 (1394)
T TIGR00956 1156 DLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQ 1235 (1394)
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 886 9999999999999999999999999999999999999999999988765 99999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHhhcccC--CChhhhHhhHhhcHHHHHHHHhhcc--cC----CCCC---------
Q 044602 567 LFGAAVLSIKRAGMIASLILMLFLLTGGYYVQ--HIPKFMQWLKYLSFLYYGFRLLLKP--RG----CRNL--------- 629 (674)
Q Consensus 567 ~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Ya~eal~~n--~g----c~~~--------- 629 (674)
++++++|+..+|+.+++++++++++|+||+++ +||.||+|++|+||++|++++++.| .| |...
T Consensus 1236 ~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~~~C~~~e~~~f~pp~ 1315 (1394)
T TIGR00956 1236 MVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCKVKELLTFNPPS 1315 (1394)
T ss_pred HHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCCeeecCccccceecCCC
Confidence 99999999999999999999999999999998 9999999999999999999999999 22 5321
Q ss_pred C-------------------------CC---C------Ccccc--CCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 044602 630 Q-------------------------SS---P------SFDTV--NLSGGLQEVWVLLGMALAYRLCAYFCLRKRINK 671 (674)
Q Consensus 630 ~-------------------------~~---~------~~~~~--~~~~~~~~~~il~~~~~~~~~l~~~~L~~~~~~ 671 (674)
+ .+ + .+..+ +.++.|+|+++++++++++ ++++++|+++.|.
T Consensus 1316 ~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~~~~~~~~~w~~~~i~~~~~~~~-~~~~~~l~~~~r~ 1392 (1394)
T TIGR00956 1316 GQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYSGRWRNFGIFIAFIFFN-IIATVFFYWLARV 1392 (1394)
T ss_pred CCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHHcCCcccccccchhhhhHHHHHH-HHHHHhhheEEEc
Confidence 0 00 0 01222 2467899999999999888 8899999887543
No 8
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.7e-91 Score=809.52 Aligned_cols=499 Identities=31% Similarity=0.529 Sum_probs=440.1
Q ss_pred ccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC-CCCccEEEECCEeCC-hhccccEEEEccCCCCCCCCCH
Q 044602 107 DYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT-DDVKGNITYNDIPYN-PALKRRIGFVTQDDVLLPQLTV 184 (674)
Q Consensus 107 ~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~-~~~~G~I~~~g~~~~-~~~~~~igyv~Q~~~l~~~lTV 184 (674)
+.+++|+|||+.++||.++||||+||||||||||+|+||.. ...+|+|++||.|.+ +.++|.+|||.|+|.|.+.+||
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TV 881 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTV 881 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccch
Confidence 45789999999999999999999999999999999999965 567999999999998 5799999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCC-CEEEEeCCCCC
Q 044602 185 EETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDP-SLLLLDEPTSG 263 (674)
Q Consensus 185 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P-~illLDEPTsg 263 (674)
+|.|.|+|.+|+|.+++.+++.+.|+++++.++|++++|..||..+ +|||.+||||++||.+|+.|| .||+|||||||
T Consensus 882 rESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSG 960 (1391)
T KOG0065|consen 882 RESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSG 960 (1391)
T ss_pred HHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCC
Confidence 9999999999999999999999999999999999999999999988 899999999999999999999 89999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEe-CCEEEEecChhH----HHHHHHhCC-CCCCCCCC
Q 044602 264 LDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLIS-EGYPVYYGKARE----SMEYFSSLG-FIPEIAMN 337 (674)
Q Consensus 264 LD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~-~G~iv~~G~~~~----~~~~f~~~g-~~~~~~~n 337 (674)
||+.++..|++.+|++++.|+||+||+|||+.++++.||++++|+ .|++||.|+..+ +++||+++| ..||...|
T Consensus 961 LDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~~~~~~N 1040 (1391)
T KOG0065|consen 961 LDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVKCISDEN 1040 (1391)
T ss_pred ccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCccCCCCCC
Confidence 999999999999999999999999999999999999999999998 679999998754 577999987 88999899
Q ss_pred hhHHHHHhhcCCcccCCchhhhhcCCCCCchHHHHHHHHHHHhh-cChhhHhhhhccCCCchhhhhhhhccCCccCCHHH
Q 044602 338 PAEFLLDLATGQVTDISVPEALSASQGASDSEVLKYLQLKYKTQ-LEPKEKEEHHRNKKIPEHLQLAIQVKKDWTLSWWD 416 (674)
Q Consensus 338 pad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 416 (674)
||||++|+++..... .....+.+.|+++ ..+..++++......+.........+++|++|+|.
T Consensus 1041 PA~~mLevi~~~~~~----------------~~~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~~~~~~~~~~~fa~s~~~ 1104 (1391)
T KOG0065|consen 1041 PAEWMLEVIGAGAEA----------------SLSVDFAEIWKNSEEYKRNKELVKELSQPPPGFSTDLEFKTRFAQSLWY 1104 (1391)
T ss_pred hHHHHHhhccccccc----------------ccCccHHHHHhccHHHHHHHHHHHHHhcCCccCCcccccccccchhHHH
Confidence 999999998742111 0111233444432 22222332222111111111122235678999999
Q ss_pred HHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 044602 417 QFHIISRRTFRE-RWRDYFDKLRLVQALGVAVVLGLLWWKSQSTTEAQLRDQVGLIFYICIFWTSSSIFGAVYVFPFEKI 495 (674)
Q Consensus 417 Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~all~G~lf~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~~i~~f~~er~ 495 (674)
|++.+++|++.. ||++.+..+|++..++.|+++|+.||+.+. +..++||++|++|+.+++.+........+.+..||.
T Consensus 1105 Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~-~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~ 1183 (1391)
T KOG0065|consen 1105 QFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGH-NVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERL 1183 (1391)
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCC-cHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhh
Confidence 999999999998 456678899999999999999999999997 456999999999999887654333234567778999
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q 044602 496 YLVKERKADMYRLSVYYVCSTLCDMVAHVFYPTIFMVIVYFMAGFKRTVPCFFLTLFAILLVAITSQGAGELFGAAVLSI 575 (674)
Q Consensus 496 v~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~m~gl~~~~~~F~~f~~~~~l~~~~~~s~~~~i~a~~~~~ 575 (674)
+++||+.+|+|++.+|++|++++|+|+.++++++|.++.|+|+|+..++.+|++|++.+++..++.+.+|+++.+++||.
T Consensus 1184 y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~ 1263 (1391)
T KOG0065|consen 1184 YEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNL 1263 (1391)
T ss_pred heeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccC--CChhhhHhhHhhcHHHHHHHHhhcc
Q 044602 576 KRAGMIASLILMLFLLTGGYYVQ--HIPKFMQWLKYLSFLYYGFRLLLKP 623 (674)
Q Consensus 576 ~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Ya~eal~~n 623 (674)
+.|..+.+++..++.+|||+++| .||.||+|++|+||+.|-.++++..
T Consensus 1264 ~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~ 1313 (1391)
T KOG0065|consen 1264 QTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISS 1313 (1391)
T ss_pred hHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHHHHHH
Confidence 99999999999999999999998 8999999999999999999999987
No 9
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.5e-86 Score=770.11 Aligned_cols=554 Identities=28% Similarity=0.500 Sum_probs=466.9
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC--CCccEEEECCEeCChh-ccccEEEEccCCCCCCCCCHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD--DVKGNITYNDIPYNPA-LKRRIGFVTQDDVLLPQLTVE 185 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~--~~~G~I~~~g~~~~~~-~~~~igyv~Q~~~l~~~lTV~ 185 (674)
..+|+|+|+-++|||++.++||+||||||||++|+|.+.. ...|+|.+||.+.++. -++.++|+.|+|.|+|.|||+
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 4799999999999999999999999999999999998752 2368999999998763 267899999999999999999
Q ss_pred HHHHHHHhhcCCCC----CCHHHHHH-HHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 044602 186 ETLVFAAFLRLPGN----MNRQQKYA-RVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEP 260 (674)
Q Consensus 186 e~l~~~~~~~~~~~----~~~~~~~~-~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEP 260 (674)
|+|.|+++++.+.. .++.++.+ ..+.+++.+||++|+||.||+...|++||||||||++|.+++.+|+++++||+
T Consensus 208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~ 287 (1391)
T KOG0065|consen 208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEI 287 (1391)
T ss_pred ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecc
Confidence 99999999987732 34444433 57889999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHHHHHHhCCCCCCCCCChh
Q 044602 261 TSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFSSLGFIPEIAMNPA 339 (674)
Q Consensus 261 TsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~~~npa 339 (674)
|+|||+.++.++++.||++++. +.|++++.|||+++++++||+|++|.+|+++|+||.+++++||+++||.||++.++|
T Consensus 288 t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~A 367 (1391)
T KOG0065|consen 288 TRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTA 367 (1391)
T ss_pred cccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHH
Confidence 9999999999999999999984 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCcccCCchhhhhcCCCCCchHHHHHHHHHHHhh-cChhhHhhhhccCCCchhhhhhhhccCCccCCHHHHH
Q 044602 340 EFLLDLATGQVTDISVPEALSASQGASDSEVLKYLQLKYKTQ-LEPKEKEEHHRNKKIPEHLQLAIQVKKDWTLSWWDQF 418 (674)
Q Consensus 340 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~ 418 (674)
||+.++++...... +.... ...........+.+.|.+. .+.....+.....+. .+..+.....++|..+.|.|+
T Consensus 368 DfLt~vts~k~~~~--~~~~~--~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~-~k~~~~al~s~~y~v~~~~qv 442 (1391)
T KOG0065|consen 368 DFLTEVTSKKDQEQ--YWNKR--SKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDK-SKKHKAALVSSKYSVPYWEQV 442 (1391)
T ss_pred HHHHHhhcCccccc--ccccc--CCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhh-hhccchhhcCCceeccHHHHH
Confidence 99999998321111 11000 0000011123344444431 222222222211110 011122334678899999999
Q ss_pred HHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Q 044602 419 HIISRRTFRERWRD-YFDKLRLVQALGVAVVLGLLWWKSQSTTEAQLRDQVGLIFYICIFWTSSSIFGAVYVFPFEKIYL 497 (674)
Q Consensus 419 ~~L~~R~~~~~r~~-~~~~~r~~~~i~~all~G~lf~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~~i~~f~~er~v~ 497 (674)
+.|++|.+.+.+++ .++..+.++.+++|+++|++||+.+.++..+.+.|.|++||.+++.++.+ ++.+....+.||||
T Consensus 443 k~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~-laEi~~~~~~~pv~ 521 (1391)
T KOG0065|consen 443 KACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNG-LAEIALTFQRLPVF 521 (1391)
T ss_pred HHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHh-HHHHHHHHhhcchH
Confidence 99999999986555 45678999999999999999999994345689999999999999987765 46787778999999
Q ss_pred HHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Q 044602 498 VKERKADMYRLSVYYVCSTLCDMVAHVFYPTIFMVIVYFMAGFKRTVPCFFLTLFAILLVAITSQGAGELFGAAVLSIKR 577 (674)
Q Consensus 498 ~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~m~gl~~~~~~F~~f~~~~~l~~~~~~s~~~~i~a~~~~~~~ 577 (674)
+|||...+|+|+||.++.+++++|+.++.+++|.+|+||++||.+++++||.++++++++++|+.++++++++++++...
T Consensus 522 ~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~ 601 (1391)
T KOG0065|consen 522 YKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSI 601 (1391)
T ss_pred HHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccC--CChhhhHhhHhhcHHHHHHHHhhcc--cC----CC-----------------CCCCC
Q 044602 578 AGMIASLILMLFLLTGGYYVQ--HIPKFMQWLKYLSFLYYGFRLLLKP--RG----CR-----------------NLQSS 632 (674)
Q Consensus 578 A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Ya~eal~~n--~g----c~-----------------~~~~~ 632 (674)
|+.++++.++.+.+++||+|| +||+||+|++|+||+.||+|+++.| .| |. ..+..
T Consensus 602 An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~ 681 (1391)
T KOG0065|consen 602 ANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGAT 681 (1391)
T ss_pred HhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhhccc
Confidence 999999999999999999999 9999999999999999999999999 22 65 12222
Q ss_pred CCccc------------cCCCCchHHHHHHHHHHHHHHHHHHHHHHHh
Q 044602 633 PSFDT------------VNLSGGLQEVWVLLGMALAYRLCAYFCLRKR 668 (674)
Q Consensus 633 ~~~~~------------~~~~~~~~~~~il~~~~~~~~~l~~~~L~~~ 668 (674)
++.+. +...+.|+|++|++|+.++|.++..+++-+.
T Consensus 682 ~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl 729 (1391)
T KOG0065|consen 682 LGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYL 729 (1391)
T ss_pred cCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhc
Confidence 33211 1234679999999999999999999888763
No 10
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.5e-54 Score=419.07 Aligned_cols=217 Identities=29% Similarity=0.499 Sum_probs=197.1
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|. ..++|+|||+++++||+++|+||||||||||||+|+|+. +
T Consensus 2 mi~i~~l~K~fg---------------------------~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE-~ 53 (240)
T COG1126 2 MIEIKNLSKSFG---------------------------DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLE-E 53 (240)
T ss_pred eEEEEeeeEEeC---------------------------CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCc-C
Confidence 478899988763 467999999999999999999999999999999999866 5
Q ss_pred CCccEEEECCEeCCh-----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 044602 149 DVKGNITYNDIPYNP-----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRH 223 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 223 (674)
+++|+|.++|+++.. .+|+++|+|||+..|||++||.||+.++...- ...++++.++++.++|+++||.+.+|
T Consensus 54 ~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~ 131 (240)
T COG1126 54 PDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKAD 131 (240)
T ss_pred CCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhh
Confidence 679999999987631 57899999999999999999999999985432 24678888999999999999999988
Q ss_pred ccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCE
Q 044602 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDK 303 (674)
Q Consensus 224 ~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 303 (674)
.. |.+|||||||||+|||||+.+|+++++|||||+|||+...++++.+++|+++|.|.|++||+... +.+.+||
T Consensus 132 ~y-----P~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~F-Ar~Vadr 205 (240)
T COG1126 132 AY-----PAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF-AREVADR 205 (240)
T ss_pred hC-----ccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHH-HHHhhhe
Confidence 75 56999999999999999999999999999999999999999999999999999999999999764 7889999
Q ss_pred EEEEeCCEEEEecChhHH
Q 044602 304 LLLISEGYPVYYGKARES 321 (674)
Q Consensus 304 v~~L~~G~iv~~G~~~~~ 321 (674)
|++|++|++++.|+++++
T Consensus 206 viFmd~G~iie~g~p~~~ 223 (240)
T COG1126 206 VIFMDQGKIIEEGPPEEF 223 (240)
T ss_pred EEEeeCCEEEEecCHHHH
Confidence 999999999999999876
No 11
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.2e-52 Score=460.11 Aligned_cols=276 Identities=28% Similarity=0.440 Sum_probs=228.1
Q ss_pred CCCcccceeeecCCCCcchhHHHHHHHHh--------hcccc-----------ccccccCCCccccC-C----CCceeEE
Q 044602 16 TPSTMGSMQIAAGSNGFGHSIEFMSQAYL--------RNRYS-----------EIDIVDESSSIEKD-R----PLPIFLK 71 (674)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~-----------~~~~~~~~~~~~~~-~----~~~~~l~ 71 (674)
..+.+||+++..|+++.|.++.|+.|... ...++ .+|++|.++..... . .....++
T Consensus 388 siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~G~~~p~~~~G~Ie 467 (716)
T KOG0058|consen 388 SILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLTGTLAPDHLQGVIE 467 (716)
T ss_pred HHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCCCccccccccceEE
Confidence 56789999999999999999999887531 00111 22566655433221 1 2334799
Q ss_pred EEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 044602 72 FEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVK 151 (674)
Q Consensus 72 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~ 151 (674)
|+||+|+|+.+ .+.+||||+||+|+|||++|||||||+||||+.++|-. ++.|.+
T Consensus 468 F~~VsFaYP~R------------------------p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~r-fY~Pts 522 (716)
T KOG0058|consen 468 FEDVSFAYPTR------------------------PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLR-FYDPTS 522 (716)
T ss_pred EEEeeeecCCC------------------------CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHH-hcCCCC
Confidence 99999999853 23679999999999999999999999999999999995 557789
Q ss_pred cEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc
Q 044602 152 GNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVG 227 (674)
Q Consensus 152 G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 227 (674)
|+|.+||+|+++ .+|++||+|.|||.||.+ ||+|||.|+......+++....+.+.+++.+..+ ++.+||.||
T Consensus 523 G~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~--p~gY~T~VG 599 (716)
T KOG0058|consen 523 GRILLDGVPISDINHKYLRRKIGLVGQEPVLFSG-SIRENIAYGLDNATDEEIEAAAKMANAHEFITNF--PDGYNTVVG 599 (716)
T ss_pred CeEEECCeehhhcCHHHHHHHeeeeeccceeecc-cHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhC--ccccccccC
Confidence 999999999874 589999999999999998 9999999996521111122233344566677655 999999999
Q ss_pred CCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEE
Q 044602 228 GGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLI 307 (674)
Q Consensus 228 ~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L 307 (674)
+++. +||||||||++|||||++||+||||||+||+||++++..|.+.|.++.+ ++|||+|.|+.++ .+.+|+|+++
T Consensus 600 EkG~-qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLST--V~~Ad~Ivvi 675 (716)
T KOG0058|consen 600 EKGS-QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLST--VRHADQIVVI 675 (716)
T ss_pred Cccc-cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhhH--hhhccEEEEE
Confidence 8775 6999999999999999999999999999999999999999999999876 6999999999986 7889999999
Q ss_pred eCCEEEEecChhHHHH
Q 044602 308 SEGYPVYYGKARESME 323 (674)
Q Consensus 308 ~~G~iv~~G~~~~~~~ 323 (674)
++|++++.|+++|+++
T Consensus 676 ~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 676 DKGRVVEMGTHDELLS 691 (716)
T ss_pred cCCeEEecccHHHHhh
Confidence 9999999999999974
No 12
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.7e-51 Score=413.34 Aligned_cols=222 Identities=25% Similarity=0.409 Sum_probs=199.8
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
+++++||++.|... . .+...+|+|||++|++||+++|+|.||||||||+|++.++. .
T Consensus 1 mI~l~~vsK~~~~~-~---------------------~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le-~ 57 (339)
T COG1135 1 MIELENVSKTFGQT-G---------------------TGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLE-R 57 (339)
T ss_pred CeEEEeeeeeeccC-C---------------------CCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccC-C
Confidence 37899999888632 1 12356999999999999999999999999999999999765 5
Q ss_pred CCccEEEECCEeCCh-------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 044602 149 DVKGNITYNDIPYNP-------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC 221 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~-------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 221 (674)
|++|+|.+||+++.. ..|++||++||+..|+...||+||+.|...+. +.++++.++++.++|+.+||++.
T Consensus 58 PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeia---g~~k~ei~~RV~elLelVgL~dk 134 (339)
T COG1135 58 PTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELA---GVPKAEIKQRVAELLELVGLSDK 134 (339)
T ss_pred CCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhc---CCCHHHHHHHHHHHHHHcCChhh
Confidence 679999999988752 46889999999999999999999999998765 36789999999999999999988
Q ss_pred ccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhh
Q 044602 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHM 300 (674)
Q Consensus 222 ~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~ 300 (674)
.+.. |.+|||||||||+|||||+.+|+||++|||||+|||++...|+++|+++.++ |.||+++||++. .+.++
T Consensus 135 ~~~y-----P~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~i 208 (339)
T COG1135 135 ADRY-----PAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME-VVKRI 208 (339)
T ss_pred hccC-----chhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHH
Confidence 8864 5699999999999999999999999999999999999999999999999875 999999999964 68999
Q ss_pred cCEEEEEeCCEEEEecChhHHH
Q 044602 301 FDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 301 ~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
||||.+|++|++++.|+..++.
T Consensus 209 c~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 209 CDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred hhhheEeeCCEEEEeccHHHhh
Confidence 9999999999999999998873
No 13
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=8.9e-51 Score=401.54 Aligned_cols=218 Identities=28% Similarity=0.522 Sum_probs=198.2
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
+++|+|||++|. .+.+++|+|++|++||+++++|||||||||+||+|.++. .
T Consensus 1 MI~~~nvsk~y~---------------------------~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLi-e 52 (309)
T COG1125 1 MIEFENVSKRYG---------------------------NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLI-E 52 (309)
T ss_pred CceeeeeehhcC---------------------------CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhccc-C
Confidence 378999998663 367999999999999999999999999999999999777 5
Q ss_pred CCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc--cc
Q 044602 149 DVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER--CR 222 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~ 222 (674)
+++|+|++||+++++ ++|++||||-|...|||++||.||+.+--.+. ..++++.+++++++++.+||+. ..
T Consensus 53 pt~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~ 129 (309)
T COG1125 53 PTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYA 129 (309)
T ss_pred CCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHh
Confidence 579999999999864 68999999999999999999999999876654 4678888999999999999974 44
Q ss_pred cccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhc
Q 044602 223 HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMF 301 (674)
Q Consensus 223 ~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~ 301 (674)
+ ++|++|||||+|||.+||||+.+|+||++|||+++|||.++.++.+.++++.++ |+|||++|||.. |.++++
T Consensus 130 ~-----RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLa 203 (309)
T COG1125 130 D-----RYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLA 203 (309)
T ss_pred h-----cCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhh
Confidence 4 467899999999999999999999999999999999999999999999999875 999999999965 689999
Q ss_pred CEEEEEeCCEEEEecChhHHHH
Q 044602 302 DKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 302 D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
|||.+|++|+++..++|++++.
T Consensus 204 dri~vm~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 204 DRIAVMDAGEIVQYDTPDEILA 225 (309)
T ss_pred ceEEEecCCeEEEeCCHHHHHh
Confidence 9999999999999999999863
No 14
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.9e-49 Score=390.66 Aligned_cols=220 Identities=32% Similarity=0.490 Sum_probs=198.6
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..+++++|++++ +++.||+|||++|++||+++|+||||||||||||+|.|+++
T Consensus 7 ~~I~vr~v~~~f---------------------------G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~ 59 (263)
T COG1127 7 PLIEVRGVTKSF---------------------------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR 59 (263)
T ss_pred ceEEEeeeeeec---------------------------CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC
Confidence 458999999865 35779999999999999999999999999999999999885
Q ss_pred CCCccEEEECCEeCCh-------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc
Q 044602 148 DDVKGNITYNDIPYNP-------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER 220 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~-------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 220 (674)
|.+|+|+++|+++.. ++++++|++||+..||..|||+||+.|..+-. ...+++..++.+..-|+.+||..
T Consensus 60 -P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~--~~lp~~~i~~lv~~KL~~VGL~~ 136 (263)
T COG1127 60 -PDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREH--TKLPESLIRELVLMKLELVGLRG 136 (263)
T ss_pred -CCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhh--ccCCHHHHHHHHHHHHHhcCCCh
Confidence 469999999998742 47889999999999999999999999976543 35778888889999999999986
Q ss_pred c-ccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHH
Q 044602 221 C-RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMF 298 (674)
Q Consensus 221 ~-~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~ 298 (674)
. .+ .+|.+|||||+||+++|||++.||+|+++||||+||||.++..+.++++++.+. |.|+|++|||..+ ++
T Consensus 137 ~~~~-----~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s-~~ 210 (263)
T COG1127 137 AAAD-----LYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDS-LL 210 (263)
T ss_pred hhhh-----hCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHH-HH
Confidence 5 44 357799999999999999999999999999999999999999999999999876 9999999999764 89
Q ss_pred hhcCEEEEEeCCEEEEecChhHHHH
Q 044602 299 HMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 299 ~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
..|||+++|.+|+++..|+++|+.+
T Consensus 211 ~i~Drv~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 211 TIADRVAVLADGKVIAEGTPEELLA 235 (263)
T ss_pred hhhceEEEEeCCEEEEeCCHHHHHh
Confidence 9999999999999999999999853
No 15
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=8.1e-49 Score=391.09 Aligned_cols=209 Identities=30% Similarity=0.532 Sum_probs=181.4
Q ss_pred EEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 044602 70 LKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD 149 (674)
Q Consensus 70 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~ 149 (674)
++++||+..|..+. ....+|+++|++|++||++||+|||||||||||++|+|+..|
T Consensus 2 i~~~~v~k~y~~~~-----------------------~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p- 57 (226)
T COG1136 2 IELKNVSKIYGLGG-----------------------EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP- 57 (226)
T ss_pred cEEeeeEEEeccCC-----------------------cceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC-
Confidence 56889988775321 125699999999999999999999999999999999998755
Q ss_pred CccEEEECCEeCCh-------hc-cccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 044602 150 VKGNITYNDIPYNP-------AL-KRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC 221 (674)
Q Consensus 150 ~~G~I~~~g~~~~~-------~~-~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 221 (674)
++|.|.++|+++.. .+ +++||||||+..|+|.+||.||+.+++.... ....+..++++++++.+||.+.
T Consensus 58 t~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~---~~~~~~~~~~~~l~~~lgl~~~ 134 (226)
T COG1136 58 TSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAG---KSAGRRKRAAEELLEVLGLEDR 134 (226)
T ss_pred CCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcC---CChhHHHHHHHHHHHhcCChhh
Confidence 79999999988752 23 4579999999999999999999998775542 2333566788999999999976
Q ss_pred cc-ccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHh
Q 044602 222 RH-TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFH 299 (674)
Q Consensus 222 ~~-~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~ 299 (674)
.+ ++ |.+|||||||||+|||||+.+|+|++.||||.+||+.++..|++++++++++ |+|+|++|||+. +..
T Consensus 135 ~~~~~-----p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~--lA~ 207 (226)
T COG1136 135 LLKKK-----PSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPE--LAK 207 (226)
T ss_pred hccCC-----chhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHH
Confidence 66 43 4699999999999999999999999999999999999999999999999875 999999999974 688
Q ss_pred hcCEEEEEeCCEE
Q 044602 300 MFDKLLLISEGYP 312 (674)
Q Consensus 300 ~~D~v~~L~~G~i 312 (674)
.|||++.|.+|++
T Consensus 208 ~~dr~i~l~dG~~ 220 (226)
T COG1136 208 YADRVIELKDGKI 220 (226)
T ss_pred hCCEEEEEeCCee
Confidence 9999999999994
No 16
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=8.7e-49 Score=412.58 Aligned_cols=211 Identities=37% Similarity=0.597 Sum_probs=190.7
Q ss_pred cccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh---hccccEEEEccCCCCCCCCCH
Q 044602 108 YKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP---ALKRRIGFVTQDDVLLPQLTV 184 (674)
Q Consensus 108 ~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~---~~~~~igyv~Q~~~l~~~lTV 184 (674)
.+.+|+||||++++||++||+||||||||||+|+|+|+..+ ++|+|.++|.+... ..++++||++|++.+++.+||
T Consensus 17 ~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p-~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~ 95 (293)
T COG1131 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP-TSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTV 95 (293)
T ss_pred CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC-CceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccH
Confidence 36799999999999999999999999999999999998854 69999999998754 578899999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 044602 185 EETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGL 264 (674)
Q Consensus 185 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgL 264 (674)
+|||.|.+.++... ....+++++++++.+||++..++++ ++||+|||||++||+||+++|++|||||||+||
T Consensus 96 ~e~l~~~~~l~~~~---~~~~~~~~~~~l~~~~L~~~~~~~~-----~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GL 167 (293)
T COG1131 96 RENLEFFARLYGLS---KEEAEERIEELLELFGLEDKANKKV-----RTLSGGMKQRLSIALALLHDPELLILDEPTSGL 167 (293)
T ss_pred HHHHHHHHHHhCCC---hhHHHHHHHHHHHHcCCchhhCcch-----hhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCC
Confidence 99999999887432 2455678999999999998656555 489999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCC-cEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHHHHHHhC
Q 044602 265 DSTSANKLIQVLQKVAKAG-RTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFSSL 328 (674)
Q Consensus 265 D~~~~~~i~~~L~~l~~~g-~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~ 328 (674)
|+.++..+.+.|++++++| +||+++||+++ ++..+||+|++|++|++++.|+++++...+...
T Consensus 168 Dp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~G~~~~~g~~~~l~~~~~~~ 231 (293)
T COG1131 168 DPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILNDGKIIAEGTPEELKEKFGGK 231 (293)
T ss_pred CHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeCCEEEEeCCHHHHHHhhccC
Confidence 9999999999999999987 89999999976 588889999999999999999999987766543
No 17
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=3e-49 Score=401.57 Aligned_cols=220 Identities=30% Similarity=0.459 Sum_probs=194.3
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++.+||+++|+ .+.+|+|+||++++||+++|+||||||||||||+|+|.++
T Consensus 2 ~L~~~~ls~~y~---------------------------~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~- 53 (258)
T COG1120 2 MLEVENLSFGYG---------------------------GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK- 53 (258)
T ss_pred eeEEEEEEEEEC---------------------------CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC-
Confidence 478999999874 3679999999999999999999999999999999999885
Q ss_pred CCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHHHcCCCcccc
Q 044602 149 DVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPG-NMNRQQKYARVQMILKELGLERCRH 223 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~ 223 (674)
+.+|+|.++|+++.. ++.+.+|||||.+...+.+||+|-+.++..-.... ....++.++.+++.|+.+|+.+.++
T Consensus 54 p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~ 133 (258)
T COG1120 54 PKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLAD 133 (258)
T ss_pred CCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhc
Confidence 459999999999863 57789999999988888899999999985322111 1123445568999999999999999
Q ss_pred ccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecCCchHHHhhcC
Q 044602 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK-AGRTVITTIHQPSSRMFHMFD 302 (674)
Q Consensus 224 ~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D 302 (674)
+.+. +|||||||||.|||||+++|+||+||||||.||...+.++++.++++++ +|+|||+++||++. ..++||
T Consensus 134 r~~~-----~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-A~ryad 207 (258)
T COG1120 134 RPVD-----ELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL-AARYAD 207 (258)
T ss_pred Cccc-----ccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCC
Confidence 8764 8999999999999999999999999999999999999999999999995 59999999999875 789999
Q ss_pred EEEEEeCCEEEEecChhHHH
Q 044602 303 KLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 303 ~v~~L~~G~iv~~G~~~~~~ 322 (674)
++++|++|++++.|+|+|++
T Consensus 208 ~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 208 HLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred EEEEEECCeEEeecCcchhc
Confidence 99999999999999998875
No 18
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1e-48 Score=411.98 Aligned_cols=218 Identities=29% Similarity=0.462 Sum_probs=199.1
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|.. ..+|+|+|+++++||+++|+||||||||||||+|+|+. .
T Consensus 3 ~i~l~~v~K~yg~---------------------------~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe-~ 54 (338)
T COG3839 3 ELELKNVRKSFGS---------------------------FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLE-E 54 (338)
T ss_pred EEEEeeeEEEcCC---------------------------ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-C
Confidence 5889999987741 12899999999999999999999999999999999987 5
Q ss_pred CCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 044602 149 DVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRV 226 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 226 (674)
+++|+|.++|.++++ ..+|.||+|||+..|||+|||+||+.|+.+.+ ..++++.+++++++.+.++|++..|++
T Consensus 55 ~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r~- 130 (338)
T COG3839 55 PTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNRK- 130 (338)
T ss_pred CCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhcC-
Confidence 569999999999875 45789999999999999999999999998775 457888999999999999999999986
Q ss_pred cCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEE
Q 044602 227 GGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLL 305 (674)
Q Consensus 227 g~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~ 305 (674)
+++|||||||||+|||||+++|++++||||+|+||...+..+...|+++.++ |.|+|.+|||.. |+..++|||.
T Consensus 131 ----P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~ 205 (338)
T COG3839 131 ----PLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIV 205 (338)
T ss_pred ----cccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEE
Confidence 4599999999999999999999999999999999999999999999998775 899999999964 6889999999
Q ss_pred EEeCCEEEEecChhHHHH
Q 044602 306 LISEGYPVYYGKARESME 323 (674)
Q Consensus 306 ~L~~G~iv~~G~~~~~~~ 323 (674)
+|++|++...|+|.|+.+
T Consensus 206 Vm~~G~i~Q~g~p~ely~ 223 (338)
T COG3839 206 VMNDGRIQQVGTPLELYE 223 (338)
T ss_pred EEeCCeeeecCChHHHhh
Confidence 999999999999999853
No 19
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=8.5e-49 Score=414.58 Aligned_cols=233 Identities=28% Similarity=0.448 Sum_probs=205.1
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++||+++|. ...+++|+|++|++||+++|+||||||||||||+|+|+.
T Consensus 4 ~~l~i~~v~k~yg---------------------------~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe- 55 (352)
T COG3842 4 PALEIRNVSKSFG---------------------------DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFE- 55 (352)
T ss_pred ceEEEEeeeeecC---------------------------CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCC-
Confidence 4589999988763 367999999999999999999999999999999999987
Q ss_pred CCCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccc
Q 044602 148 DDVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTR 225 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 225 (674)
.+++|+|.++|+++.. ..+|.||+|||+..|||+|||+||+.|+++.+ ....+++.+++++++++.++|++..+++
T Consensus 56 ~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R~ 133 (352)
T COG3842 56 QPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADRK 133 (352)
T ss_pred CCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhhC
Confidence 4569999999999974 46889999999999999999999999998743 2345677889999999999999988765
Q ss_pred ccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEE
Q 044602 226 VGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKL 304 (674)
Q Consensus 226 vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v 304 (674)
+.+|||||||||++||||+.+|++|+||||.|+||..-+.++...|+++.++ |.|.|++|||.. +...++|||
T Consensus 134 -----p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI 207 (352)
T COG3842 134 -----PHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRI 207 (352)
T ss_pred -----hhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccce
Confidence 4699999999999999999999999999999999999999999999998875 999999999965 688999999
Q ss_pred EEEeCCEEEEecChhHHHHHHHhCCCCCCCCCChhHHHHH
Q 044602 305 LLISEGYPVYYGKARESMEYFSSLGFIPEIAMNPAEFLLD 344 (674)
Q Consensus 305 ~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~~~npad~~~~ 344 (674)
.+|++|+|...|+|+|+. ..|...-.|||+-+
T Consensus 208 ~Vm~~G~I~Q~gtP~eiY--------~~P~~~fVA~FiG~ 239 (352)
T COG3842 208 AVMNDGRIEQVGTPEEIY--------ERPATRFVADFIGE 239 (352)
T ss_pred EEccCCceeecCCHHHHh--------hCcchHHHHHHhCc
Confidence 999999999999999983 23444445666543
No 20
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.1e-49 Score=385.63 Aligned_cols=224 Identities=28% Similarity=0.478 Sum_probs=196.1
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+..|+ +.+++|+|||++|++||++||+||||||||||||+|+|+. +
T Consensus 3 ~i~~~nl~k~yp--------------------------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~-d 55 (258)
T COG3638 3 MIEVKNLSKTYP--------------------------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLV-D 55 (258)
T ss_pred eEEEeeeeeecC--------------------------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhccc-C
Confidence 589999998885 2367999999999999999999999999999999999976 5
Q ss_pred CCccEEEECCEeCCh-------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCC-----CCCHHHHHHHHHHHHHHc
Q 044602 149 DVKGNITYNDIPYNP-------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPG-----NMNRQQKYARVQMILKEL 216 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~-------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~-----~~~~~~~~~~v~~~l~~l 216 (674)
+++|+|.+||.++.. .+|+++||++|++.|.+.+||.+|+..+..-+.+. +...++.+.++-+.|+.+
T Consensus 56 ~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLerv 135 (258)
T COG3638 56 PTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERV 135 (258)
T ss_pred CCcceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 679999999987642 46789999999999999999999999875432211 223345567788999999
Q ss_pred CCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecCCch
Q 044602 217 GLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK-AGRTVITTIHQPSS 295 (674)
Q Consensus 217 gL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~ 295 (674)
|+.+.+.++.+ .|||||+|||+|||||+.+|+|++.|||+++|||.+++++++.|+++++ +|.|||++.||...
T Consensus 136 gi~~~A~qra~-----~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl 210 (258)
T COG3638 136 GILDKAYQRAS-----TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL 210 (258)
T ss_pred CcHHHHHHHhc-----cCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH
Confidence 99998888765 8999999999999999999999999999999999999999999999987 49999999999764
Q ss_pred HHHhhcCEEEEEeCCEEEEecChhHHHHHH
Q 044602 296 RMFHMFDKLLLISEGYPVYYGKARESMEYF 325 (674)
Q Consensus 296 ~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f 325 (674)
+.++||||+-|++|+++|+|+++|+-+.+
T Consensus 211 -A~~Y~~Riigl~~G~ivfDg~~~el~~~~ 239 (258)
T COG3638 211 -AKKYADRIIGLKAGRIVFDGPASELTDEA 239 (258)
T ss_pred -HHHHHhhheEecCCcEEEeCChhhhhHHH
Confidence 78999999999999999999999875433
No 21
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-48 Score=388.34 Aligned_cols=191 Identities=30% Similarity=0.501 Sum_probs=174.0
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETL 188 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l 188 (674)
..+|+|+|++|++||+++|+||||||||||||+|+|+.. +++|+|.++|+++ ..-...+|||||++.|+|.+||.||+
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~-p~~G~V~~~g~~v-~~p~~~~~~vFQ~~~LlPW~Tv~~NV 93 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK-PTSGEVLLDGRPV-TGPGPDIGYVFQEDALLPWLTVLDNV 93 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCccc-CCCCCCEEEEeccCcccchhhHHhhh
Confidence 569999999999999999999999999999999999884 5699999999998 34567899999999999999999999
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTS 268 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~ 268 (674)
.++...+. .++++..+++++.|+.+||.+..|.. |++|||||||||+|||||+.+|+||+||||+++||..+
T Consensus 94 ~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~-----P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalT 165 (248)
T COG1116 94 ALGLELRG---KSKAEARERAKELLELVGLAGFEDKY-----PHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALT 165 (248)
T ss_pred eehhhccc---cchHhHHHHHHHHHHHcCCcchhhcC-----ccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHH
Confidence 99986642 45677778999999999999888764 67999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-CCcEEEEEecCCchHHHhhcCEEEEEeCC
Q 044602 269 ANKLIQVLQKVAK-AGRTVITTIHQPSSRMFHMFDKLLLISEG 310 (674)
Q Consensus 269 ~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 310 (674)
+..+.+.|.++.+ .++||+++|||.. |...++|||++|.++
T Consensus 166 R~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~~ 207 (248)
T COG1116 166 REELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSNR 207 (248)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecCC
Confidence 9999999999876 4899999999976 578899999999984
No 22
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.9e-48 Score=389.21 Aligned_cols=218 Identities=28% Similarity=0.543 Sum_probs=189.3
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++|+++.|. + +++|+||||++++|++++|+||||||||||+|+|.|+++
T Consensus 3 ~~i~v~nl~v~y~--------------------------~-~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~ 55 (254)
T COG1121 3 PMIEVENLTVSYG--------------------------N-RPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK 55 (254)
T ss_pred cEEEEeeeEEEEC--------------------------C-EeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3589999999874 1 259999999999999999999999999999999999885
Q ss_pred CCCccEEEECCEeCChh-ccccEEEEccC---CCCCCCCCHHHHHHHHHhhcCC--CCCCHHHHHHHHHHHHHHcCCCcc
Q 044602 148 DDVKGNITYNDIPYNPA-LKRRIGFVTQD---DVLLPQLTVEETLVFAAFLRLP--GNMNRQQKYARVQMILKELGLERC 221 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~~-~~~~igyv~Q~---~~l~~~lTV~e~l~~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~~ 221 (674)
+.+|+|.++|++.... -+.+||||||. |.-|| +||+|-+..+...+.. ...+ ++..+.++++|+.+|+.+.
T Consensus 56 -p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~~-~~d~~~v~~aL~~Vgm~~~ 132 (254)
T COG1121 56 -PSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLN-KKDKEKVDEALERVGMEDL 132 (254)
T ss_pred -CCcceEEEccccccccccCCeEEEcCcccccCCCCC-cCHHHHHHccCccccccccccc-HHHHHHHHHHHHHcCchhh
Confidence 4699999999987653 24689999995 44566 5999999987443321 1122 3346889999999999999
Q ss_pred ccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhc
Q 044602 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMF 301 (674)
Q Consensus 222 ~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~ 301 (674)
+|+.+| +|||||+|||.|||||+++|++|+|||||+|+|+.++..+.++|++++++|+||++++||+.. +.+.|
T Consensus 133 ~~r~i~-----~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~-v~~~~ 206 (254)
T COG1121 133 RDRQIG-----ELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGL-VMAYF 206 (254)
T ss_pred hCCccc-----ccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHH-hHhhC
Confidence 999987 899999999999999999999999999999999999999999999999999999999999875 78999
Q ss_pred CEEEEEeCCEEEEecChhHHH
Q 044602 302 DKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 302 D~v~~L~~G~iv~~G~~~~~~ 322 (674)
|+|+.|+ +++++.|+++++.
T Consensus 207 D~vi~Ln-~~~~~~G~~~~~~ 226 (254)
T COG1121 207 DRVICLN-RHLIASGPPEEVL 226 (254)
T ss_pred CEEEEEc-CeeEeccChhhcc
Confidence 9999996 6788999999875
No 23
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=1.6e-48 Score=448.84 Aligned_cols=276 Identities=28% Similarity=0.447 Sum_probs=221.4
Q ss_pred CCCcccceeeecCCCCcchhHHHHHHHHh--------hcccccc-----------ccccCCCcccc------CCCCceeE
Q 044602 16 TPSTMGSMQIAAGSNGFGHSIEFMSQAYL--------RNRYSEI-----------DIVDESSSIEK------DRPLPIFL 70 (674)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~-----------~~~~~~~~~~~------~~~~~~~l 70 (674)
-.+.+|+.++.+|.++.|.++++...... .+..+++ ++.+.+.+.+. ....+..+
T Consensus 393 ~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~~~~~~~~~g~I 472 (709)
T COG2274 393 LILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEI 472 (709)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccCceE
Confidence 45678999999999999999998654321 0000000 44444333211 12233579
Q ss_pred EEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCC
Q 044602 71 KFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDV 150 (674)
Q Consensus 71 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~ 150 (674)
+|+||+|+|.. ++..+|+|+|++|+|||.+||+|+||||||||+|+|+|++ .|.
T Consensus 473 ~~~nvsf~y~~-------------------------~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly-~p~ 526 (709)
T COG2274 473 EFENVSFRYGP-------------------------DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLY-KPQ 526 (709)
T ss_pred EEEEEEEEeCC-------------------------CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCC-CCC
Confidence 99999999862 2246999999999999999999999999999999999987 456
Q ss_pred ccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 044602 151 KGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRV 226 (674)
Q Consensus 151 ~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 226 (674)
+|+|++||.|++. .+|++||||+||+.+|.+ |++||+.++......+++-++.....+++.++.+ +..++|.+
T Consensus 527 ~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~g-SI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~l--P~gy~t~v 603 (709)
T COG2274 527 QGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSG-SIRENIALGNPEATDEEIIEAAQLAGAHEFIENL--PMGYDTPV 603 (709)
T ss_pred CceEEECCEeHHhcCHHHHHhheeEEcccchhhcC-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhc--cccccccc
Confidence 9999999999863 689999999999999998 9999999875322111112222333445555554 88999999
Q ss_pred cCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEE
Q 044602 227 GGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLL 306 (674)
Q Consensus 227 g~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~ 306 (674)
|+.+. +||||||||++|||||+++|+||+||||||+||+.+++.|.+.|.++.+ |+|+|+++|+++. .+.||||++
T Consensus 604 ~E~G~-~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~-~~T~I~IaHRl~t--i~~adrIiV 679 (709)
T COG2274 604 GEGGA-NLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ-GRTVIIIAHRLST--IRSADRIIV 679 (709)
T ss_pred ccCCC-CCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc-CCeEEEEEccchH--hhhccEEEE
Confidence 97664 6999999999999999999999999999999999999999999999864 8999999999875 889999999
Q ss_pred EeCCEEEEecChhHHHHH
Q 044602 307 ISEGYPVYYGKARESMEY 324 (674)
Q Consensus 307 L~~G~iv~~G~~~~~~~~ 324 (674)
|++|+++++|+++|+++.
T Consensus 680 l~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 680 LDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred ccCCceeccCCHHHHHHh
Confidence 999999999999999763
No 24
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=5e-48 Score=367.22 Aligned_cols=213 Identities=30% Similarity=0.456 Sum_probs=191.6
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
+++|+||+++|+. + +++|+||||++++||++-|+||||||||||||+|.+.. .
T Consensus 1 mI~f~~V~k~Y~~-------------------------g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e-~ 53 (223)
T COG2884 1 MIRFENVSKAYPG-------------------------G-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEE-R 53 (223)
T ss_pred CeeehhhhhhcCC-------------------------C-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhh-c
Confidence 3789999987752 3 67999999999999999999999999999999999876 4
Q ss_pred CCccEEEECCEeCCh-------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 044602 149 DVKGNITYNDIPYNP-------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC 221 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~-------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 221 (674)
+++|+|.+||+++.. .+|++||+|+||..|+++.||+||+.|+.... +.++++.++++.++|+.+||.+.
T Consensus 54 pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k 130 (223)
T COG2884 54 PTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHK 130 (223)
T ss_pred CCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchh
Confidence 569999999999852 47999999999999999999999999997665 45778889999999999999998
Q ss_pred ccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhc
Q 044602 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMF 301 (674)
Q Consensus 222 ~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~ 301 (674)
.+.. |.+|||||||||+||||++.+|++|+.||||.+|||..+.+|++++.++.+.|+||++.|||.. -+..+-
T Consensus 131 ~~~l-----P~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~-lv~~~~ 204 (223)
T COG2884 131 ARAL-----PSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLE-LVNRMR 204 (223)
T ss_pred hhcC-----ccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHH-HHHhcc
Confidence 8764 5699999999999999999999999999999999999999999999999999999999999954 466677
Q ss_pred CEEEEEeCCEEEEecC
Q 044602 302 DKLLLISEGYPVYYGK 317 (674)
Q Consensus 302 D~v~~L~~G~iv~~G~ 317 (674)
-|++.|++|+++....
T Consensus 205 ~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 205 HRVLALEDGRLVRDES 220 (223)
T ss_pred CcEEEEeCCEEEeccc
Confidence 7999999999987654
No 25
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.5e-48 Score=370.42 Aligned_cols=205 Identities=29% Similarity=0.468 Sum_probs=191.0
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh---hccccEEEEccCCCCCCCCCHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP---ALKRRIGFVTQDDVLLPQLTVE 185 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~---~~~~~igyv~Q~~~l~~~lTV~ 185 (674)
.++++||||+++.||+++|+|||||||||+||+|++++.| ++|+|.+||.+... ..|++||.++.+..++..||++
T Consensus 15 v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P-~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~r 93 (245)
T COG4555 15 VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIP-DSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTAR 93 (245)
T ss_pred HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccC-CCceEEEeecccccChHHHhhhcceecCCcChhhhhhHH
Confidence 3489999999999999999999999999999999999855 59999999998753 5789999999888899999999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 044602 186 ETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD 265 (674)
Q Consensus 186 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD 265 (674)
|||.|.+++. ++.+.+.+++.+++.+.++|.++.|+++| ++|-|+||||+|||||+++|++++|||||||||
T Consensus 94 Enl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLD 165 (245)
T COG4555 94 ENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLD 165 (245)
T ss_pred HHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCcc
Confidence 9999998876 56778888999999999999999999987 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHHH
Q 044602 266 STSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 266 ~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
..+...+.+.+++++++|++||++||... ++..+||+|++|++|++|+.|+.+++.+
T Consensus 166 i~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 166 IRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred HHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 99999999999999988999999999965 6888999999999999999999988754
No 26
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-47 Score=388.33 Aligned_cols=208 Identities=31% Similarity=0.504 Sum_probs=188.0
Q ss_pred cccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCE---eCCh--hccccEEEEccCCCCCCCC
Q 044602 108 YKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDI---PYNP--ALKRRIGFVTQDDVLLPQL 182 (674)
Q Consensus 108 ~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~---~~~~--~~~~~igyv~Q~~~l~~~l 182 (674)
...+++|||++|+.||++|++|||||||||||++|+|+..+ ++|.|.+||+ +.++ .-.|+||||+|+..+|++|
T Consensus 14 ~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p-~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~Hm 92 (345)
T COG1118 14 AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETP-DAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHM 92 (345)
T ss_pred cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCC-CCceEEECCEeccchhccchhhcceeEEEechhhcccc
Confidence 45689999999999999999999999999999999998854 6999999999 5443 2346899999999999999
Q ss_pred CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 044602 183 TVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTS 262 (674)
Q Consensus 183 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTs 262 (674)
||.|||.|+.+.+ ....++.+.+.+++++|+.+.|++..++ +|.+|||||||||++||||+.+|++|+||||++
T Consensus 93 tVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~r-----yP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ 166 (345)
T COG1118 93 TVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADR-----YPAQLSGGQRQRVALARALAVEPKVLLLDEPFG 166 (345)
T ss_pred hHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhc-----CchhcChHHHHHHHHHHHhhcCCCeEeecCCch
Confidence 9999999998776 3334677888999999999999987765 567999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHHH
Q 044602 263 GLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 263 gLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
+||..-+.++.+.|+++.++ |.|++++|||+. ++.++||||++|++|+|...|+++|+.+
T Consensus 167 ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 167 ALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQGRIEQVGPPDEVYD 227 (345)
T ss_pred hhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence 99999999999999999876 999999999975 6899999999999999999999999843
No 27
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-47 Score=370.98 Aligned_cols=233 Identities=25% Similarity=0.376 Sum_probs=196.7
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++||++.|. .+.+|+|||+.|++++++|++||||||||||||++.....
T Consensus 6 ~~~~~~~l~~yYg---------------------------~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmnd 58 (253)
T COG1117 6 PAIEVRDLNLYYG---------------------------DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMND 58 (253)
T ss_pred ceeEecceeEEEC---------------------------chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcc
Confidence 4578889988763 4679999999999999999999999999999999995432
Q ss_pred ----CCCccEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC
Q 044602 148 ----DDVKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG 217 (674)
Q Consensus 148 ----~~~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 217 (674)
...+|+|.++|+++.. ++|+++|+|||.|.-|| +|++||+.|+.++.- ...++.++.|+..|+...
T Consensus 59 l~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g---~~~~~ldeiVe~sLk~Aa 134 (253)
T COG1117 59 LIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHG---IKDKELDEIVESSLKKAA 134 (253)
T ss_pred cCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhc---cchHHHHHHHHHHHHHhH
Confidence 1357999999999742 58999999999999999 799999999987652 233677788999999988
Q ss_pred CCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHH
Q 044602 218 LERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRM 297 (674)
Q Consensus 218 L~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i 297 (674)
|.+.-..+.. ....+|||||+||+||||||+.+|+|||||||||+|||.+..+|.+++.+|++ .-|||++||.+. +.
T Consensus 135 LWdEVKDrL~-~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~-~yTIviVTHnmq-QA 211 (253)
T COG1117 135 LWDEVKDRLH-KSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK-KYTIVIVTHNMQ-QA 211 (253)
T ss_pred hHHHhHHHhh-CCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh-ccEEEEEeCCHH-HH
Confidence 8654333332 23457999999999999999999999999999999999999999999999974 799999999975 57
Q ss_pred HhhcCEEEEEeCCEEEEecChhHHHHHHHhCCCCCCCCCChhHHH
Q 044602 298 FHMFDKLLLISEGYPVYYGKARESMEYFSSLGFIPEIAMNPAEFL 342 (674)
Q Consensus 298 ~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~~~npad~~ 342 (674)
.+..|+..++..|+++++|+.+++. .-|.+....||+
T Consensus 212 aRvSD~taFf~~G~LvE~g~T~~iF--------~~P~~~~TedYi 248 (253)
T COG1117 212 ARVSDYTAFFYLGELVEFGPTDKIF--------TNPKHKRTEDYI 248 (253)
T ss_pred HHHhHhhhhhcccEEEEEcCHHhhh--------cCccHHHHHHHh
Confidence 8999999999999999999999872 345555556665
No 28
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=1.4e-46 Score=403.06 Aligned_cols=220 Identities=23% Similarity=0.382 Sum_probs=193.6
Q ss_pred EEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 044602 70 LKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD 149 (674)
Q Consensus 70 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~ 149 (674)
++++||+++|+.+ .+.+++|+|+||++++||+++|+||||||||||+|+|+|+.+ +
T Consensus 2 I~~~~lsk~y~~~-----------------------~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~-p 57 (343)
T TIGR02314 2 IKLSNITKVFHQG-----------------------TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER-P 57 (343)
T ss_pred EEEEEEEEEECCC-----------------------CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-C
Confidence 7899999988521 112469999999999999999999999999999999999874 5
Q ss_pred CccEEEECCEeCCh-------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccc
Q 044602 150 VKGNITYNDIPYNP-------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCR 222 (674)
Q Consensus 150 ~~G~I~~~g~~~~~-------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 222 (674)
++|+|.++|+++.. ..+++|||++|+..+++.+||+||+.++.... ..++++..+++.++++.+||.+..
T Consensus 58 ~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~ 134 (343)
T TIGR02314 58 TSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKH 134 (343)
T ss_pred CceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhh
Confidence 69999999998752 24678999999999999999999999976532 235566677899999999999887
Q ss_pred cccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhc
Q 044602 223 HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMF 301 (674)
Q Consensus 223 ~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~ 301 (674)
|+.+ .+|||||||||+|||||+.+|++|+||||||+||+.++..+++.|++++++ |.|||++||++. .+.++|
T Consensus 135 ~~~~-----~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~ 208 (343)
T TIGR02314 135 DSYP-----SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRIC 208 (343)
T ss_pred hCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhC
Confidence 7654 589999999999999999999999999999999999999999999999875 999999999975 577899
Q ss_pred CEEEEEeCCEEEEecChhHHH
Q 044602 302 DKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 302 D~v~~L~~G~iv~~G~~~~~~ 322 (674)
|+|++|++|++++.|+++++.
T Consensus 209 d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 209 DCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred CEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999998874
No 29
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=1.8e-46 Score=398.11 Aligned_cols=218 Identities=30% Similarity=0.469 Sum_probs=194.8
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|. .+.+|+||||++++||+++|+||||||||||+++|+|+++
T Consensus 7 ~i~i~~l~k~~~---------------------------~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~- 58 (306)
T PRK13537 7 PIDFRNVEKRYG---------------------------DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH- 58 (306)
T ss_pred eEEEEeEEEEEC---------------------------CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-
Confidence 589999999773 2469999999999999999999999999999999999874
Q ss_pred CCccEEEECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccc
Q 044602 149 DVKGNITYNDIPYNP---ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTR 225 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~---~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 225 (674)
+++|+|.++|.++.. ..++++|||+|++.+++.+||+||+.|.+..+ ..+..+..++++++++.++|.+..+++
T Consensus 59 p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~ 135 (306)
T PRK13537 59 PDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYF---GLSAAAARALVPPLLEFAKLENKADAK 135 (306)
T ss_pred CCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCc
Confidence 569999999998753 45778999999999999999999999876543 234445556788999999999888887
Q ss_pred ccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEE
Q 044602 226 VGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLL 305 (674)
Q Consensus 226 vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 305 (674)
++ +||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||+|+
T Consensus 136 ~~-----~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~ 209 (306)
T PRK13537 136 VG-----ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLC 209 (306)
T ss_pred hh-----hCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEE
Confidence 65 89999999999999999999999999999999999999999999999878999999999975 5789999999
Q ss_pred EEeCCEEEEecChhHHHH
Q 044602 306 LISEGYPVYYGKARESME 323 (674)
Q Consensus 306 ~L~~G~iv~~G~~~~~~~ 323 (674)
+|++|++++.|+++++.+
T Consensus 210 il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 210 VIEEGRKIAEGAPHALIE 227 (306)
T ss_pred EEECCEEEEECCHHHHHh
Confidence 999999999999998864
No 30
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-46 Score=403.56 Aligned_cols=218 Identities=28% Similarity=0.453 Sum_probs=194.0
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|+ +.+.+|+|+||++++||+++|+||||||||||||+|+|+.+
T Consensus 3 ~l~i~~l~~~~~--------------------------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~- 55 (356)
T PRK11650 3 GLKLQAVRKSYD--------------------------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER- 55 (356)
T ss_pred EEEEEeEEEEeC--------------------------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC-
Confidence 488999998773 12468999999999999999999999999999999999874
Q ss_pred CCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 044602 149 DVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRV 226 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 226 (674)
+.+|+|.+||+++.. ..++.+|||+|++.+||++||+||+.|+.+.+ ..++.+..++++++++.+||.+..++.+
T Consensus 56 p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~ 132 (356)
T PRK11650 56 ITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKP 132 (356)
T ss_pred CCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCh
Confidence 569999999998853 34578999999999999999999999986543 2455666678999999999998877764
Q ss_pred cCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEE
Q 044602 227 GGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLL 305 (674)
Q Consensus 227 g~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~ 305 (674)
++|||||||||+|||||+.+|++|+||||||+||+.++..+.+.|+++.++ |+|+|++|||+. ++.++||+++
T Consensus 133 -----~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~ 206 (356)
T PRK11650 133 -----RELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVV 206 (356)
T ss_pred -----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 589999999999999999999999999999999999999999999999875 999999999975 5889999999
Q ss_pred EEeCCEEEEecChhHHH
Q 044602 306 LISEGYPVYYGKARESM 322 (674)
Q Consensus 306 ~L~~G~iv~~G~~~~~~ 322 (674)
+|++|+++..|+++++.
T Consensus 207 vl~~G~i~~~g~~~~~~ 223 (356)
T PRK11650 207 VMNGGVAEQIGTPVEVY 223 (356)
T ss_pred EEeCCEEEEECCHHHHH
Confidence 99999999999999874
No 31
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=4.9e-46 Score=401.25 Aligned_cols=218 Identities=30% Similarity=0.483 Sum_probs=195.2
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|. .+.+|+|+||++++||+++|+|||||||||||++|+|+.+
T Consensus 4 ~l~~~~l~~~~~---------------------------~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~- 55 (353)
T TIGR03265 4 YLSIDNIRKRFG---------------------------AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER- 55 (353)
T ss_pred EEEEEEEEEEeC---------------------------CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC-
Confidence 488999998773 2458999999999999999999999999999999999874
Q ss_pred CCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 044602 149 DVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRV 226 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 226 (674)
+.+|+|.++|+++.. ..++.+|||+|+..+||++||+||+.|+...+ ..++++..++++++++.+||.+..++.+
T Consensus 56 p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~~ 132 (353)
T TIGR03265 56 QTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKYP 132 (353)
T ss_pred CCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCCh
Confidence 569999999998753 34678999999999999999999999987543 2456667788999999999998887754
Q ss_pred cCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEE
Q 044602 227 GGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLL 305 (674)
Q Consensus 227 g~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~ 305 (674)
++|||||||||+|||||+.+|++|||||||++||..++..+.+.|+++.++ |.|+|++|||+. ++..+||+|+
T Consensus 133 -----~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~ 206 (353)
T TIGR03265 133 -----GQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIV 206 (353)
T ss_pred -----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEE
Confidence 589999999999999999999999999999999999999999999999775 899999999975 5889999999
Q ss_pred EEeCCEEEEecChhHHHH
Q 044602 306 LISEGYPVYYGKARESME 323 (674)
Q Consensus 306 ~L~~G~iv~~G~~~~~~~ 323 (674)
+|++|++++.|+++++.+
T Consensus 207 vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 207 VMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred EEECCEEEEEcCHHHHHh
Confidence 999999999999998853
No 32
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.9e-46 Score=379.92 Aligned_cols=204 Identities=31% Similarity=0.510 Sum_probs=179.4
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-------hccccEEEEccCCCCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-------ALKRRIGFVTQDDVLLPQ 181 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-------~~~~~igyv~Q~~~l~~~ 181 (674)
+++|+|+||++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|+++.. .+++.++||+|++.+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (235)
T cd03261 13 RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR-PDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDS 91 (235)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCC
Confidence 459999999999999999999999999999999999874 569999999988642 346789999999999999
Q ss_pred CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 044602 182 LTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPT 261 (674)
Q Consensus 182 lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPT 261 (674)
+||+||+.++..... ...+++..++++++++.+||.+..++.+ .+|||||||||+|||||+.+|++|+|||||
T Consensus 92 ~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~ia~al~~~p~llllDEPt 164 (235)
T cd03261 92 LTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYP-----AELSGGMKKRVALARALALDPELLLYDEPT 164 (235)
T ss_pred CcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 999999998753221 1244455667889999999988777665 489999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHH
Q 044602 262 SGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 262 sgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|+++++
T Consensus 165 ~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 224 (235)
T cd03261 165 AGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYDGKIVAEGTPEEL 224 (235)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEECCeEEEecCHHHH
Confidence 999999999999999999874 899999999976 47789999999999999999998875
No 33
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-46 Score=379.03 Aligned_cols=218 Identities=29% Similarity=0.509 Sum_probs=194.6
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++|+|+. + +.+|+|+|+++++||.++|+|+||||||||+++|+|++.
T Consensus 3 ~i~~~~l~~~y~~-------------------------~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~- 55 (235)
T COG1122 3 MIEAENLSFRYPG-------------------------R-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK- 55 (235)
T ss_pred eEEEEEEEEEcCC-------------------------C-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc-
Confidence 4789999998852 2 579999999999999999999999999999999999985
Q ss_pred CCccEEEECCEeCC-----hhccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 044602 149 DVKGNITYNDIPYN-----PALKRRIGFVTQDD--VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC 221 (674)
Q Consensus 149 ~~~G~I~~~g~~~~-----~~~~~~igyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 221 (674)
+.+|+|.++|.+.. ..+++++|||+|+| .+|.. ||.|.+.|+.... ..++++.+++++++++.+|+.+.
T Consensus 56 p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~-tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~ 131 (235)
T COG1122 56 PTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGP-TVEDEVAFGLENL---GLPREEIEERVAEALELVGLEEL 131 (235)
T ss_pred CCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccC-cHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhh
Confidence 45899999999865 15789999999996 45554 9999999997543 45677888999999999999998
Q ss_pred ccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhh
Q 044602 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHM 300 (674)
Q Consensus 222 ~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~ 300 (674)
+++. +..|||||||||+||.+|+.+|++|+|||||||||+..+..+++.++++.++ |+|+|++|||.. .+..+
T Consensus 132 ~~r~-----p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ 205 (235)
T COG1122 132 LDRP-----PFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEY 205 (235)
T ss_pred ccCC-----ccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhh
Confidence 8775 4689999999999999999999999999999999999999999999999987 699999999975 58889
Q ss_pred cCEEEEEeCCEEEEecChhHHHH
Q 044602 301 FDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 301 ~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
||++++|++|+++++|+++++.+
T Consensus 206 ad~v~vl~~G~i~~~g~p~~i~~ 228 (235)
T COG1122 206 ADRVVVLDDGKILADGDPAEIFN 228 (235)
T ss_pred CCEEEEEECCEEeecCCHHHHhh
Confidence 99999999999999999987754
No 34
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8e-46 Score=399.02 Aligned_cols=217 Identities=23% Similarity=0.446 Sum_probs=194.4
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|. .+.+|+|+|+++++||+++|+|||||||||||++|+|+. +
T Consensus 6 ~l~~~~l~~~~~---------------------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~-~ 57 (351)
T PRK11432 6 FVVLKNITKRFG---------------------------SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLE-K 57 (351)
T ss_pred EEEEEeEEEEEC---------------------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCC-C
Confidence 589999998773 245899999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 044602 149 DVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRV 226 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 226 (674)
+.+|+|.+||+++.. ..++.+|||+|++.+||++||+||+.|+.+.+ ..++++..++++++++.+||.+..++.
T Consensus 58 p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r~- 133 (351)
T PRK11432 58 PTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDRY- 133 (351)
T ss_pred CCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-
Confidence 569999999998853 34578999999999999999999999987543 245666778899999999998877765
Q ss_pred cCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEE
Q 044602 227 GGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLL 305 (674)
Q Consensus 227 g~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~ 305 (674)
+++|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|+|++|||+. ++.+++|+|+
T Consensus 134 ----~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~ 208 (351)
T PRK11432 134 ----VDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVI 208 (351)
T ss_pred ----hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEE
Confidence 4589999999999999999999999999999999999999999999999775 899999999975 5789999999
Q ss_pred EEeCCEEEEecChhHHH
Q 044602 306 LISEGYPVYYGKARESM 322 (674)
Q Consensus 306 ~L~~G~iv~~G~~~~~~ 322 (674)
+|++|+++..|+++++.
T Consensus 209 vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 209 VMNKGKIMQIGSPQELY 225 (351)
T ss_pred EEECCEEEEEcCHHHHH
Confidence 99999999999999874
No 35
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=1.3e-45 Score=398.55 Aligned_cols=217 Identities=27% Similarity=0.423 Sum_probs=194.1
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|. .+.+|+|+|+++++||+++|+|||||||||||++|+|+.+
T Consensus 5 ~l~~~~l~~~~~---------------------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~- 56 (362)
T TIGR03258 5 GIRIDHLRVAYG---------------------------ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK- 56 (362)
T ss_pred EEEEEEEEEEEC---------------------------CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-
Confidence 478999998773 2458999999999999999999999999999999999874
Q ss_pred CCc--cEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccc
Q 044602 149 DVK--GNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHT 224 (674)
Q Consensus 149 ~~~--G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 224 (674)
+.+ |+|.++|+++.. ..++.+|||+|++.+||++||+||+.|+...+ ..++.+..++++++++.+||.+..++
T Consensus 57 p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~ 133 (362)
T TIGR03258 57 AAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAH 133 (362)
T ss_pred CCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhC
Confidence 568 999999998753 34678999999999999999999999987543 24556667789999999999988887
Q ss_pred cccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CcEEEEEecCCchHHHhhcC
Q 044602 225 RVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA--GRTVITTIHQPSSRMFHMFD 302 (674)
Q Consensus 225 ~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~--g~tvi~~~H~~~~~i~~~~D 302 (674)
.+ ++|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.++ |+|+|++|||+. ++..++|
T Consensus 134 ~~-----~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~d 207 (362)
T TIGR03258 134 LP-----AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLAD 207 (362)
T ss_pred Ch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCC
Confidence 65 589999999999999999999999999999999999999999999999876 799999999975 5789999
Q ss_pred EEEEEeCCEEEEecChhHHH
Q 044602 303 KLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 303 ~v~~L~~G~iv~~G~~~~~~ 322 (674)
+|++|++|+++..|+++++.
T Consensus 208 ri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 208 KAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred EEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999884
No 36
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=2e-45 Score=394.51 Aligned_cols=221 Identities=27% Similarity=0.451 Sum_probs=195.7
Q ss_pred CceeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcC
Q 044602 66 LPIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 66 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~ 145 (674)
....++++||+++|+ .+.+|+|+||++++||+++|+||||||||||+++|+|+
T Consensus 38 ~~~~i~i~nl~k~y~---------------------------~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl 90 (340)
T PRK13536 38 STVAIDLAGVSKSYG---------------------------DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGM 90 (340)
T ss_pred CceeEEEEEEEEEEC---------------------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 345699999999773 24599999999999999999999999999999999998
Q ss_pred CCCCCccEEEECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccc
Q 044602 146 LTDDVKGNITYNDIPYNP---ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCR 222 (674)
Q Consensus 146 ~~~~~~G~I~~~g~~~~~---~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 222 (674)
++ +.+|+|.++|+++.. ..++.+||++|++.+++.+||.||+.+..... .....+..++++++++.++|.+..
T Consensus 91 ~~-p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~ 166 (340)
T PRK13536 91 TS-PDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKA 166 (340)
T ss_pred CC-CCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhh
Confidence 84 569999999998753 45778999999999999999999999765443 123444556788999999999888
Q ss_pred cccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcC
Q 044602 223 HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFD 302 (674)
Q Consensus 223 ~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 302 (674)
++.++ +||||||||++||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.++||
T Consensus 167 ~~~~~-----~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d 240 (340)
T PRK13536 167 DARVS-----DLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCD 240 (340)
T ss_pred CCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCC
Confidence 88765 89999999999999999999999999999999999999999999999878999999999975 5889999
Q ss_pred EEEEEeCCEEEEecChhHHHH
Q 044602 303 KLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 303 ~v~~L~~G~iv~~G~~~~~~~ 323 (674)
+|++|++|++++.|+++++.+
T Consensus 241 ~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 241 RLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred EEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999865
No 37
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.8e-46 Score=367.21 Aligned_cols=221 Identities=29% Similarity=0.429 Sum_probs=189.7
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++.+|+++.|+.+. ...++|+||||++.+||+++|+|+||||||||.++|+|+..
T Consensus 3 ~l~v~nl~~~y~~~~-----------------------~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~- 58 (252)
T COG1124 3 LLSVRNLSIVYGGGK-----------------------FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK- 58 (252)
T ss_pred eEEEeceEEEecCCc-----------------------chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC-
Confidence 488999999886321 11369999999999999999999999999999999999875
Q ss_pred CCccEEEECCEeCCh-----hccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 044602 149 DVKGNITYNDIPYNP-----ALKRRIGFVTQDD--VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC 221 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 221 (674)
+.+|+|.++|++..+ ..++.+.+||||+ .+-|..||++.|.-+... ...++ .++++.++++.+||++.
T Consensus 59 p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~---~~~~~--~~~~i~~~L~~VgL~~~ 133 (252)
T COG1124 59 PSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP---HGLSK--SQQRIAELLDQVGLPPS 133 (252)
T ss_pred CCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhcc---CCccH--HHHHHHHHHHHcCCCHH
Confidence 469999999987653 4678899999997 588999999999876543 22333 33449999999999864
Q ss_pred ccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhh
Q 044602 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHM 300 (674)
Q Consensus 222 ~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~ 300 (674)
.-. +++.+||||||||+||||||+.+|++||||||||+||+..+.+|+++|.+++++ |.|.|++|||.+ .+..+
T Consensus 134 ~l~----R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~ 208 (252)
T COG1124 134 FLD----RRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHM 208 (252)
T ss_pred HHh----cCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHH
Confidence 322 357799999999999999999999999999999999999999999999999875 889999999975 58899
Q ss_pred cCEEEEEeCCEEEEecChhHHHH
Q 044602 301 FDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 301 ~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
||||++|++|++++.++.+++..
T Consensus 209 cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 209 CDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred hhheeeeeCCeEEEeechhhhhc
Confidence 99999999999999999998854
No 38
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-46 Score=404.37 Aligned_cols=222 Identities=30% Similarity=0.484 Sum_probs=188.4
Q ss_pred ceeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 67 PIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 67 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+..++|+||+++|.. +++||+++||+|++||.+||+|+|||||||++|+|.+.+
T Consensus 349 ~~~I~F~dV~f~y~~--------------------------k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~ 402 (591)
T KOG0057|consen 349 GGSIEFDDVHFSYGP--------------------------KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFF 402 (591)
T ss_pred CCcEEEEeeEEEeCC--------------------------CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 346999999998852 245999999999999999999999999999999999766
Q ss_pred CCCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccc
Q 044602 147 TDDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCR 222 (674)
Q Consensus 147 ~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 222 (674)
. .+|+|++||+++++ .+|+.|||||||..||++ ||.+||.|+......+++-+..++...++.+.. +++.+
T Consensus 403 -d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFnd-TIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~--l~~GY 477 (591)
T KOG0057|consen 403 -D-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFND-TILYNIKYGNPSASDEEVVEACKRAGLHDVISR--LPDGY 477 (591)
T ss_pred -c-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccch-hHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHh--ccccc
Confidence 4 69999999999864 689999999999999998 999999998533211111112222223444443 47889
Q ss_pred cccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcC
Q 044602 223 HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFD 302 (674)
Q Consensus 223 ~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 302 (674)
+|.||+++. .|||||||||+||||++.||+|+++|||||+||++++.++++.+.+.. .|+|+|++.|+.+ ....||
T Consensus 478 ~T~VGerG~-~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~-~~rTvI~IvH~l~--ll~~~D 553 (591)
T KOG0057|consen 478 QTLVGERGL-MLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVM-SGRTVIMIVHRLD--LLKDFD 553 (591)
T ss_pred hhhHhhccc-ccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhc-CCCeEEEEEecch--hHhcCC
Confidence 999998775 599999999999999999999999999999999999999999999843 5999999999976 477899
Q ss_pred EEEEEeCCEEEEecChhHHHH
Q 044602 303 KLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 303 ~v~~L~~G~iv~~G~~~~~~~ 323 (674)
+|++|++|++.+.|+++|++.
T Consensus 554 kI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 554 KIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred EEEEEECCeeEEeccHHHHhh
Confidence 999999999999999999986
No 39
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=3e-45 Score=395.08 Aligned_cols=220 Identities=26% Similarity=0.441 Sum_probs=193.1
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++++|. .+.+|+|+||++++||+++|+||||||||||||+|+|+. +
T Consensus 2 ~L~i~~l~~~~~---------------------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~-~ 53 (353)
T PRK10851 2 SIEIANIKKSFG---------------------------RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLE-H 53 (353)
T ss_pred EEEEEEEEEEeC---------------------------CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-C
Confidence 378899998763 245899999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccc
Q 044602 149 DVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLP-GNMNRQQKYARVQMILKELGLERCRHTR 225 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 225 (674)
+.+|+|.++|+++.. ..++.+|||+|++.+||++||+||+.|+...... ...++++..++++++++.++|++..+++
T Consensus 54 p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~ 133 (353)
T PRK10851 54 QTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRY 133 (353)
T ss_pred CCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCC
Confidence 569999999998753 3457899999999999999999999998653211 1234556677899999999998877765
Q ss_pred ccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEE
Q 044602 226 VGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKL 304 (674)
Q Consensus 226 vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v 304 (674)
+ .+|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|+|++||++. ++.++||+|
T Consensus 134 ~-----~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri 207 (353)
T PRK10851 134 P-----AQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRV 207 (353)
T ss_pred h-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEE
Confidence 4 589999999999999999999999999999999999999999999999876 899999999975 578999999
Q ss_pred EEEeCCEEEEecChhHHH
Q 044602 305 LLISEGYPVYYGKARESM 322 (674)
Q Consensus 305 ~~L~~G~iv~~G~~~~~~ 322 (674)
++|++|++++.|+++++.
T Consensus 208 ~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 208 VVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred EEEECCEEEEEcCHHHHH
Confidence 999999999999999874
No 40
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=3.3e-45 Score=396.95 Aligned_cols=218 Identities=27% Similarity=0.428 Sum_probs=194.1
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++|++++|. .+.+|+|+|+++++||+++|+|||||||||||++|+|+.+
T Consensus 13 ~~L~l~~l~~~~~---------------------------~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~ 65 (375)
T PRK09452 13 PLVELRGISKSFD---------------------------GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET 65 (375)
T ss_pred ceEEEEEEEEEEC---------------------------CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3589999998773 2458999999999999999999999999999999999874
Q ss_pred CCCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccc
Q 044602 148 DDVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTR 225 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 225 (674)
+.+|+|.++|+++.. ..++.+|||+|++.+||++||.||+.|+...+ ..++.+..++++++++.+||.+..++.
T Consensus 66 -p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~ 141 (375)
T PRK09452 66 -PDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRK 141 (375)
T ss_pred -CCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCC
Confidence 569999999998753 34678999999999999999999999986533 234556667889999999999888876
Q ss_pred ccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEE
Q 044602 226 VGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKL 304 (674)
Q Consensus 226 vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v 304 (674)
+ .+|||||||||+|||||+.+|++|||||||+|||..++..+.+.|+++.++ |+|+|++|||+. ++..++|+|
T Consensus 142 p-----~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri 215 (375)
T PRK09452 142 P-----HQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRI 215 (375)
T ss_pred h-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEE
Confidence 4 589999999999999999999999999999999999999999999999875 999999999975 578999999
Q ss_pred EEEeCCEEEEecChhHHH
Q 044602 305 LLISEGYPVYYGKARESM 322 (674)
Q Consensus 305 ~~L~~G~iv~~G~~~~~~ 322 (674)
++|++|+++..|+++++.
T Consensus 216 ~vl~~G~i~~~g~~~~i~ 233 (375)
T PRK09452 216 VVMRDGRIEQDGTPREIY 233 (375)
T ss_pred EEEECCEEEEEcCHHHHH
Confidence 999999999999999874
No 41
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=2.8e-45 Score=370.02 Aligned_cols=208 Identities=30% Similarity=0.467 Sum_probs=180.3
Q ss_pred EEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 044602 70 LKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD 149 (674)
Q Consensus 70 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~ 149 (674)
++++|++++|+. +.+.+|+|+|+++++||+++|+||||||||||+|+|+|.++ +
T Consensus 2 l~~~~l~~~~~~-------------------------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~ 55 (216)
T TIGR00960 2 IRFEQVSKAYPG-------------------------GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK-P 55 (216)
T ss_pred eEEEEEEEEecC-------------------------CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-C
Confidence 688999987741 11359999999999999999999999999999999999874 5
Q ss_pred CccEEEECCEeCCh-------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccc
Q 044602 150 VKGNITYNDIPYNP-------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCR 222 (674)
Q Consensus 150 ~~G~I~~~g~~~~~-------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 222 (674)
.+|+|.++|+++.. ..++.++|++|++.+++.+||.||+.++...+ ....++..++++++++.+||.+..
T Consensus 56 ~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~ 132 (216)
T TIGR00960 56 TRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRII---GVPPRDANERVSAALEKVGLEGKA 132 (216)
T ss_pred CceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhh
Confidence 69999999998742 24678999999999999999999999875432 123344556789999999998877
Q ss_pred cccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcC
Q 044602 223 HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFD 302 (674)
Q Consensus 223 ~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 302 (674)
++.+ .+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||
T Consensus 133 ~~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d 206 (216)
T TIGR00960 133 HALP-----MQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRH 206 (216)
T ss_pred hCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCC
Confidence 7665 489999999999999999999999999999999999999999999999877999999999975 4678899
Q ss_pred EEEEEeCCEE
Q 044602 303 KLLLISEGYP 312 (674)
Q Consensus 303 ~v~~L~~G~i 312 (674)
++++|++|++
T Consensus 207 ~i~~l~~G~i 216 (216)
T TIGR00960 207 RTLTLSRGRL 216 (216)
T ss_pred EEEEEeCCcC
Confidence 9999999974
No 42
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=5.7e-45 Score=386.48 Aligned_cols=218 Identities=28% Similarity=0.438 Sum_probs=191.5
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|. .+.+|+|+||++++||+++|+||||||||||+++|+|+++
T Consensus 4 ~i~~~~l~~~~~---------------------------~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~- 55 (303)
T TIGR01288 4 AIDLVGVSKSYG---------------------------DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS- 55 (303)
T ss_pred EEEEEeEEEEeC---------------------------CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-
Confidence 488999998773 2459999999999999999999999999999999999874
Q ss_pred CCccEEEECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccc
Q 044602 149 DVKGNITYNDIPYNP---ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTR 225 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~---~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 225 (674)
+.+|+|.++|+++.. ..++.+||++|++.+++.+||+||+.+..... ..+..+..++++++++.++|.+..++.
T Consensus 56 p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~ 132 (303)
T TIGR01288 56 PDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVR 132 (303)
T ss_pred CCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCc
Confidence 569999999998742 35678999999999999999999998754432 123444456778899999999888877
Q ss_pred ccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEE
Q 044602 226 VGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLL 305 (674)
Q Consensus 226 vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 305 (674)
++ +||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||+++
T Consensus 133 ~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~ 206 (303)
T TIGR01288 133 VA-----LLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLC 206 (303)
T ss_pred hh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEE
Confidence 64 89999999999999999999999999999999999999999999999878999999999976 5788999999
Q ss_pred EEeCCEEEEecChhHHHH
Q 044602 306 LISEGYPVYYGKARESME 323 (674)
Q Consensus 306 ~L~~G~iv~~G~~~~~~~ 323 (674)
+|++|++++.|+++++.+
T Consensus 207 ~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 207 VLESGRKIAEGRPHALID 224 (303)
T ss_pred EEECCEEEEEcCHHHHHh
Confidence 999999999999998754
No 43
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.9e-45 Score=392.23 Aligned_cols=220 Identities=24% Similarity=0.397 Sum_probs=191.9
Q ss_pred EEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 044602 70 LKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD 149 (674)
Q Consensus 70 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~ 149 (674)
++++||+++|+.. .+.+++|+|+||++++||+++|+||||||||||+|+|+|+++ +
T Consensus 2 i~i~~l~~~y~~~-----------------------~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~-p 57 (343)
T PRK11153 2 IELKNISKVFPQG-----------------------GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER-P 57 (343)
T ss_pred EEEEeEEEEeCCC-----------------------CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-C
Confidence 7899999988521 112569999999999999999999999999999999999874 5
Q ss_pred CccEEEECCEeCCh-------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccc
Q 044602 150 VKGNITYNDIPYNP-------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCR 222 (674)
Q Consensus 150 ~~G~I~~~g~~~~~-------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 222 (674)
.+|+|.++|+++.. ..++.+|||+|++.+++.+||+||+.++.... ..++++..++++++++.+||.+..
T Consensus 58 ~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~ 134 (343)
T PRK11153 58 TSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKA 134 (343)
T ss_pred CceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhh
Confidence 69999999998752 23678999999999999999999999876443 234455567889999999998877
Q ss_pred cccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhc
Q 044602 223 HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMF 301 (674)
Q Consensus 223 ~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~ 301 (674)
++.+ ++||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++|
T Consensus 135 ~~~~-----~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~ 208 (343)
T PRK11153 135 DRYP-----AQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRIC 208 (343)
T ss_pred hCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhC
Confidence 7765 489999999999999999999999999999999999999999999999765 899999999975 577899
Q ss_pred CEEEEEeCCEEEEecChhHHH
Q 044602 302 DKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 302 D~v~~L~~G~iv~~G~~~~~~ 322 (674)
|++++|++|++++.|+++++.
T Consensus 209 d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 209 DRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred CEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999998874
No 44
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5e-45 Score=369.36 Aligned_cols=203 Identities=30% Similarity=0.446 Sum_probs=179.1
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh---hccccEEEEccCCCCCCCCCHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP---ALKRRIGFVTQDDVLLPQLTVE 185 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~---~~~~~igyv~Q~~~l~~~lTV~ 185 (674)
+.+|+|+|+++++||+++|+||||||||||+|+|+|++ ++.+|+|.++|.++.. ..++.++|++|++.+++.+||+
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 91 (220)
T cd03265 13 FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLL-KPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGW 91 (220)
T ss_pred EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHH
Confidence 45999999999999999999999999999999999987 4569999999987642 3566899999999999999999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 044602 186 ETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD 265 (674)
Q Consensus 186 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD 265 (674)
||+.+....+ ....++..++++++++.+||++..++++ .+||||||||++||+||+.+|++++|||||+|||
T Consensus 92 ~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD 163 (220)
T cd03265 92 ENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRLV-----KTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLD 163 (220)
T ss_pred HHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCC
Confidence 9999875432 1234445567899999999988777765 4899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHH
Q 044602 266 STSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 266 ~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|+++..|+++++
T Consensus 164 ~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 164 PQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 99999999999999876 899999999976 47788999999999999999988763
No 45
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.1e-46 Score=437.78 Aligned_cols=221 Identities=30% Similarity=0.495 Sum_probs=194.1
Q ss_pred CceeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcC
Q 044602 66 LPIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 66 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~ 145 (674)
....++|+||+|+||.+ .+.+||+|+|+++++|+.+||||||||||||.+.+|- |
T Consensus 984 ~~G~I~~~~V~F~YPsR------------------------P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLe-R 1038 (1228)
T KOG0055|consen 984 VKGDIEFRNVSFAYPTR------------------------PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLE-R 1038 (1228)
T ss_pred ceeEEEEeeeEeeCCCC------------------------CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHH-H
Confidence 34579999999999842 2467999999999999999999999999999999999 5
Q ss_pred CCCCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHH-----HHHHHHHHHHHc
Q 044602 146 LTDDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQ-----KYARVQMILKEL 216 (674)
Q Consensus 146 ~~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~-----~~~~v~~~l~~l 216 (674)
.+++++|.|.+||+++++ .+|+++|.|.|+|.||.. |++|||.|+. .+ .+.++ +.+.+++.+.
T Consensus 1039 fYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~-TIrENI~YG~-~~----vs~~eIi~Aak~ANaH~FI~-- 1110 (1228)
T KOG0055|consen 1039 FYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNG-TIRENIAYGS-EE----VSEEEIIEAAKLANAHNFIS-- 1110 (1228)
T ss_pred hcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcc-cHHHHHhccC-CC----CCHHHHHHHHHHhhhHHHHh--
Confidence 667779999999999874 689999999999999998 9999999992 11 23332 2333445554
Q ss_pred CCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchH
Q 044602 217 GLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSR 296 (674)
Q Consensus 217 gL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~ 296 (674)
+|++.+||.||+++. +||||||||++||||+++||+||||||.||+||+++++.+.+.|++.. .|+|.|+++|++++
T Consensus 1111 sLP~GyDT~vGerG~-QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLST- 1187 (1228)
T KOG0055|consen 1111 SLPQGYDTRVGERGV-QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLST- 1187 (1228)
T ss_pred cCcCcccCccCcccC-cCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchhh-
Confidence 569999999998775 699999999999999999999999999999999999999999999986 49999999999986
Q ss_pred HHhhcCEEEEEeCCEEEEecChhHHHH
Q 044602 297 MFHMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 297 i~~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
.+.||.|.|+++|++++.|+|+++++
T Consensus 1188 -IqnaD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1188 -IQNADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred -hhcCCEEEEEECCEEEecccHHHHHh
Confidence 78899999999999999999999986
No 46
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=1.1e-45 Score=348.65 Aligned_cols=200 Identities=25% Similarity=0.451 Sum_probs=179.3
Q ss_pred eeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHH
Q 044602 113 KGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEETLVF 190 (674)
Q Consensus 113 ~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e~l~~ 190 (674)
=..++++++||++||+||||||||||||+|+|... |.+|+|.+||++... ...|-++++||+..+|.+|||.+|+.+
T Consensus 16 ~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~-P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigL 94 (231)
T COG3840 16 MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET-PASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGL 94 (231)
T ss_pred EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccC-CCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcc
Confidence 36789999999999999999999999999999875 469999999999863 467889999999999999999999999
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 044602 191 AAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSAN 270 (674)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~ 270 (674)
+..-.+ .-.++.+++++.++..+||..+.++..+ +|||||||||++||+|+++-+||+||||+|+|||.-+.
T Consensus 95 Gl~P~L---kL~a~~r~~v~~aa~~vGl~~~~~RLP~-----~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~ 166 (231)
T COG3840 95 GLSPGL---KLNAEQREKVEAAAAQVGLAGFLKRLPG-----ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRA 166 (231)
T ss_pred cCCccc---ccCHHHHHHHHHHHHHhChhhHhhhCcc-----ccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHH
Confidence 853221 2235667889999999999999887654 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 271 KLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 271 ~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
++..++.+++++ +.|++++||+|++ +.+++|+++++++|+|.+.|+.++..
T Consensus 167 eMl~Lv~~l~~E~~~TllmVTH~~~D-a~~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 167 EMLALVSQLCDERKMTLLMVTHHPED-AARIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred HHHHHHHHHHHhhCCEEEEEeCCHHH-HHHhhhceEEEeCCEEEeeccHHHHh
Confidence 999999999874 8999999999975 78999999999999999999988764
No 47
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.2e-45 Score=368.02 Aligned_cols=198 Identities=35% Similarity=0.553 Sum_probs=173.8
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEE 186 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e 186 (674)
+++|+|+||++++||+++|+||||||||||+++|+|.+ ++.+|+|.++|+++.. ..++.++|++|++.+++.+||+|
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 91 (213)
T cd03259 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLE-RPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAE 91 (213)
T ss_pred eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHH
Confidence 46999999999999999999999999999999999987 4569999999998753 24568999999999999999999
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 044602 187 TLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDS 266 (674)
Q Consensus 187 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~ 266 (674)
|+.++.... .....+..++++++++.+||.+..++.+ .+||||||||++|||||+.+|++|+|||||+|||+
T Consensus 92 ~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~ 163 (213)
T cd03259 92 NIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRYP-----HELSGGQQQRVALARALAREPSLLLLDEPLSALDA 163 (213)
T ss_pred HHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 999875432 1234445567889999999988777765 48999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEec
Q 044602 267 TSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYG 316 (674)
Q Consensus 267 ~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 316 (674)
.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|
T Consensus 164 ~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 164 KLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 9999999999999874 899999999975 477899999999999998765
No 48
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=3.5e-45 Score=387.90 Aligned_cols=207 Identities=25% Similarity=0.412 Sum_probs=184.9
Q ss_pred cccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh---hccccEEEEccCCCCCCCCCH
Q 044602 108 YKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP---ALKRRIGFVTQDDVLLPQLTV 184 (674)
Q Consensus 108 ~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~---~~~~~igyv~Q~~~l~~~lTV 184 (674)
.+.+|+|+||++++||+++|+||||||||||+|+|+|+++ +++|+|.++|+++.. ..++.+||++|++.+++.+||
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 83 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR-PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTG 83 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcH
Confidence 3569999999999999999999999999999999999884 569999999998743 356789999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 044602 185 EETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGL 264 (674)
Q Consensus 185 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgL 264 (674)
+||+.+.+..+ .....+..++++++++.+||.+..++.++ +|||||||||+||+||+.+|++|+|||||+||
T Consensus 84 ~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~gL 155 (302)
T TIGR01188 84 RENLEMMGRLY---GLPKDEAEERAEELLELFELGEAADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGL 155 (302)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhCCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 99999876543 23344556678999999999988887764 89999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHHHH
Q 044602 265 DSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEY 324 (674)
Q Consensus 265 D~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 324 (674)
|+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|+++++.+-
T Consensus 156 D~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 156 DPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999999999999878999999999975 57889999999999999999999987553
No 49
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=7.1e-46 Score=425.68 Aligned_cols=272 Identities=29% Similarity=0.440 Sum_probs=212.0
Q ss_pred CcccceeeecCCCCcchhHHHHHHHHh--------hc-----------cccccccccCCCcccc----CCCCceeEEEEe
Q 044602 18 STMGSMQIAAGSNGFGHSIEFMSQAYL--------RN-----------RYSEIDIVDESSSIEK----DRPLPIFLKFED 74 (674)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~-----------~~~~~~~~~~~~~~~~----~~~~~~~l~~~~ 74 (674)
..+|+..+..|..++|.++.++.+... .. .....++.+.++...+ .......++|+|
T Consensus 254 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~I~f~~ 333 (567)
T COG1132 254 LALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDPLKDTIGSIEFEN 333 (567)
T ss_pred HHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCCCCCeEEEEE
Confidence 345667778888888888887765431 00 0001133333221111 112234599999
Q ss_pred EEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEE
Q 044602 75 VEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNI 154 (674)
Q Consensus 75 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I 154 (674)
|+|+|+. ++++|+|+||+++|||.+||+||||||||||+|+|.|++ ++.+|+|
T Consensus 334 vsf~y~~--------------------------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~-~~~~G~I 386 (567)
T COG1132 334 VSFSYPG--------------------------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLY-DPTSGEI 386 (567)
T ss_pred EEEEcCC--------------------------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccC-CCCCCeE
Confidence 9998852 367999999999999999999999999999999999876 5579999
Q ss_pred EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCc
Q 044602 155 TYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGF 230 (674)
Q Consensus 155 ~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 230 (674)
.+||+++++ .+|++|+||+||+.+|.+ ||+|||.++......+++.++.+...+++.++.+ +++.||.||+++
T Consensus 387 ~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~-TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~l--p~g~dt~vge~G 463 (567)
T COG1132 387 LIDGIDIRDISLDSLRKRIGIVSQDPLLFSG-TIRENIALGRPDATDEEIEEALKLANAHEFIANL--PDGYDTIVGERG 463 (567)
T ss_pred EECCEehhhcCHHHHHHhccEEcccceeecc-cHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhC--cccccceecCCC
Confidence 999999864 689999999999999996 9999999984321111112222222344555554 778999999655
Q ss_pred cCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCC
Q 044602 231 IKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEG 310 (674)
Q Consensus 231 ~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 310 (674)
..||||||||++||||+++||+||+||||||+||+.++..+.+.++++. +|+|+|+++|++++ .+.||+|++|++|
T Consensus 464 -~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlst--i~~aD~IiVl~~G 539 (567)
T COG1132 464 -VNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLST--IKNADRIIVLDNG 539 (567)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhH--HHhCCEEEEEECC
Confidence 4699999999999999999999999999999999999999999999887 57899999999975 4559999999999
Q ss_pred EEEEecChhHHHH
Q 044602 311 YPVYYGKARESME 323 (674)
Q Consensus 311 ~iv~~G~~~~~~~ 323 (674)
++++.|+|+|+++
T Consensus 540 ~i~e~G~h~eLl~ 552 (567)
T COG1132 540 RIVERGTHEELLA 552 (567)
T ss_pred EEEEecCHHHHHH
Confidence 9999999999975
No 50
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-44 Score=381.49 Aligned_cols=237 Identities=26% Similarity=0.396 Sum_probs=197.3
Q ss_pred EEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 044602 70 LKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD 149 (674)
Q Consensus 70 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~ 149 (674)
++++||+++|+... ...+.+|+|+|+++++||+++|+||||||||||+++|+|+++ +
T Consensus 2 i~~~~v~~~y~~~~----------------------~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~-p 58 (288)
T PRK13643 2 IKFEKVNYTYQPNS----------------------PFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ-P 58 (288)
T ss_pred EEEEEEEEEeCCCC----------------------cccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC-C
Confidence 78999999885210 011459999999999999999999999999999999999874 5
Q ss_pred CccEEEECCEeCCh--------hccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 044602 150 VKGNITYNDIPYNP--------ALKRRIGFVTQDD--VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE 219 (674)
Q Consensus 150 ~~G~I~~~g~~~~~--------~~~~~igyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 219 (674)
.+|+|.++|.++.. ..++.+|||+|++ .+++ .||.||+.|+.... ..++.+..+++.++++.+||.
T Consensus 59 ~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~ 134 (288)
T PRK13643 59 TEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLA 134 (288)
T ss_pred CCcEEEECCEECccccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCC
Confidence 69999999998631 3567899999986 5666 59999999876432 234556677889999999996
Q ss_pred -ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHH
Q 044602 220 -RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMF 298 (674)
Q Consensus 220 -~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~ 298 (674)
+..++. ++.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.
T Consensus 135 ~~~~~~~-----~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~ 208 (288)
T PRK13643 135 DEFWEKS-----PFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVA 208 (288)
T ss_pred hhhccCC-----cccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHH
Confidence 355554 4589999999999999999999999999999999999999999999999877999999999975 477
Q ss_pred hhcCEEEEEeCCEEEEecChhHHH---HHHHhCCCCCCCCCChh
Q 044602 299 HMFDKLLLISEGYPVYYGKARESM---EYFSSLGFIPEIAMNPA 339 (674)
Q Consensus 299 ~~~D~v~~L~~G~iv~~G~~~~~~---~~f~~~g~~~~~~~npa 339 (674)
++||+|++|++|++++.|+++++. +.++..|+.+|.....+
T Consensus 209 ~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~ 252 (288)
T PRK13643 209 DYADYVYLLEKGHIISCGTPSDVFQEVDFLKAHELGVPKATHFA 252 (288)
T ss_pred HhCCEEEEEECCEEEEECCHHHHHcCHHHHHHcCCCCChHHHHH
Confidence 899999999999999999999874 34556677666543333
No 51
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.5e-45 Score=394.70 Aligned_cols=217 Identities=29% Similarity=0.472 Sum_probs=192.0
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++++|. .+.+|+|+|+++++||+++|+||||||||||||+|+|+++
T Consensus 3 ~l~i~~l~~~~~---------------------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~- 54 (369)
T PRK11000 3 SVTLRNVTKAYG---------------------------DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED- 54 (369)
T ss_pred EEEEEEEEEEeC---------------------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-
Confidence 378999998773 2458999999999999999999999999999999999874
Q ss_pred CCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 044602 149 DVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRV 226 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 226 (674)
+.+|+|.++|+++.. ..++.+|||+|++.+|+++||+||+.|+...+ ..++++..++++++++.+||.+..++.+
T Consensus 55 p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~~ 131 (369)
T PRK11000 55 ITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRKP 131 (369)
T ss_pred CCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh
Confidence 569999999998753 23567999999999999999999999986533 2344556678999999999988777765
Q ss_pred cCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEE
Q 044602 227 GGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLL 305 (674)
Q Consensus 227 g~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~ 305 (674)
.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |+|+|++|||+. ++..+||+++
T Consensus 132 -----~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~ 205 (369)
T PRK11000 132 -----KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIV 205 (369)
T ss_pred -----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEE
Confidence 489999999999999999999999999999999999999999999999775 899999999975 5788999999
Q ss_pred EEeCCEEEEecChhHHH
Q 044602 306 LISEGYPVYYGKARESM 322 (674)
Q Consensus 306 ~L~~G~iv~~G~~~~~~ 322 (674)
+|++|+++..|+++++.
T Consensus 206 vl~~G~i~~~g~~~~i~ 222 (369)
T PRK11000 206 VLDAGRVAQVGKPLELY 222 (369)
T ss_pred EEECCEEEEEcCHHHHH
Confidence 99999999999999874
No 52
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=6.5e-45 Score=372.25 Aligned_cols=207 Identities=28% Similarity=0.465 Sum_probs=179.3
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----h-ccccEEEEccCCCCCCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----A-LKRRIGFVTQDDVLLPQLT 183 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~-~~~~igyv~Q~~~l~~~lT 183 (674)
+.+|+|+|+++++||+++|+||||||||||+++|+|++ ++.+|+|.++|.++.. . .++.++|++|++.+++.+|
T Consensus 13 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 91 (236)
T cd03219 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFL-RPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELT 91 (236)
T ss_pred EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCC-CCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCC
Confidence 45899999999999999999999999999999999987 4569999999998753 2 2457999999999999999
Q ss_pred HHHHHHHHHhhcCCCC-------CCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEE
Q 044602 184 VEETLVFAAFLRLPGN-------MNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLL 256 (674)
Q Consensus 184 V~e~l~~~~~~~~~~~-------~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~ill 256 (674)
|+||+.++........ ....+..++++++++.+||++..++.+ ++||||||||++|||||+.+|++|+
T Consensus 92 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lll 166 (236)
T cd03219 92 VLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPA-----GELSYGQQRRLEIARALATDPKLLL 166 (236)
T ss_pred HHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999998754321110 013344567889999999987777655 4899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 257 LDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 257 LDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
|||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|+++++.
T Consensus 167 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (236)
T cd03219 167 LDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQGRVIAEGTPDEVR 231 (236)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEeecCHHHhc
Confidence 99999999999999999999999877999999999976 477889999999999999999988763
No 53
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.4e-45 Score=372.02 Aligned_cols=219 Identities=26% Similarity=0.419 Sum_probs=187.6
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|+ .+.+|+|+|+++++||+++|+||||||||||+|+|+|.. +
T Consensus 2 ~l~~~~l~~~~~---------------------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~ 53 (239)
T cd03296 2 SIEVRNVSKRFG---------------------------DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLE-R 53 (239)
T ss_pred EEEEEeEEEEEC---------------------------CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-C
Confidence 378999998773 245999999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccc
Q 044602 149 DVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLP-GNMNRQQKYARVQMILKELGLERCRHTR 225 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 225 (674)
+.+|+|.++|+++.. ..++.++|++|++.+++.+||+||+.++...... ......+..++++++++.+||.+..++.
T Consensus 54 ~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 133 (239)
T cd03296 54 PDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRY 133 (239)
T ss_pred CCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcC
Confidence 569999999998753 2356799999999999989999999987543211 0012334456788999999998777765
Q ss_pred ccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEE
Q 044602 226 VGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKL 304 (674)
Q Consensus 226 vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v 304 (674)
+ .+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++
T Consensus 134 ~-----~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i 207 (239)
T cd03296 134 P-----AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRV 207 (239)
T ss_pred h-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEE
Confidence 5 489999999999999999999999999999999999999999999999875 899999999975 477889999
Q ss_pred EEEeCCEEEEecChhHH
Q 044602 305 LLISEGYPVYYGKARES 321 (674)
Q Consensus 305 ~~L~~G~iv~~G~~~~~ 321 (674)
++|++|++++.|+++++
T Consensus 208 ~~l~~G~i~~~~~~~~~ 224 (239)
T cd03296 208 VVMNKGRIEQVGTPDEV 224 (239)
T ss_pred EEEECCeEEEecCHHHH
Confidence 99999999999998876
No 54
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.4e-45 Score=393.99 Aligned_cols=218 Identities=25% Similarity=0.447 Sum_probs=193.9
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++|+++++. .+.+|+|+|+++++||+++|+|||||||||||++|+|+.+
T Consensus 18 ~~l~l~~v~~~~~---------------------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~ 70 (377)
T PRK11607 18 PLLEIRNLTKSFD---------------------------GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ 70 (377)
T ss_pred ceEEEEeEEEEEC---------------------------CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3589999998763 2458999999999999999999999999999999999874
Q ss_pred CCCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccc
Q 044602 148 DDVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTR 225 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 225 (674)
+.+|+|.++|+++.. ..++.+|||+|++.+||++||.||+.|+.+.+ ..++.+..++++++++.++|.+..++.
T Consensus 71 -p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~ 146 (377)
T PRK11607 71 -PTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRK 146 (377)
T ss_pred -CCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC
Confidence 569999999998753 35678999999999999999999999986543 235566677899999999998877765
Q ss_pred ccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEE
Q 044602 226 VGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKL 304 (674)
Q Consensus 226 vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v 304 (674)
+ ++|||||||||+|||||+.+|++|||||||++||..++..+.+.|+++.++ |.|+|++|||+. ++..++|++
T Consensus 147 ~-----~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri 220 (377)
T PRK11607 147 P-----HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRI 220 (377)
T ss_pred h-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEE
Confidence 4 589999999999999999999999999999999999999999999998764 899999999975 578999999
Q ss_pred EEEeCCEEEEecChhHHH
Q 044602 305 LLISEGYPVYYGKARESM 322 (674)
Q Consensus 305 ~~L~~G~iv~~G~~~~~~ 322 (674)
++|++|+++..|+++++.
T Consensus 221 ~vl~~G~i~~~g~~~~~~ 238 (377)
T PRK11607 221 AIMNRGKFVQIGEPEEIY 238 (377)
T ss_pred EEEeCCEEEEEcCHHHHH
Confidence 999999999999999874
No 55
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.2e-46 Score=434.53 Aligned_cols=226 Identities=30% Similarity=0.454 Sum_probs=191.9
Q ss_pred CceeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcC
Q 044602 66 LPIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 66 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~ 145 (674)
....++|+||+|+|+.+ .+.+||+|+|+.|++||.+||+|||||||||++++|.++
T Consensus 347 ~~g~ief~nV~FsYPsR------------------------pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rf 402 (1228)
T KOG0055|consen 347 IKGEIEFRNVCFSYPSR------------------------PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARF 402 (1228)
T ss_pred cccceEEEEEEecCCCC------------------------CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 34579999999999742 235799999999999999999999999999999999975
Q ss_pred CCCCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 044602 146 LTDDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC 221 (674)
Q Consensus 146 ~~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 221 (674)
+ .|.+|+|++||.++.+ .+|.+||.|.|+|.+|.. ||+|||.|+.......++.+..+...+++.+.. |++.
T Consensus 403 y-dP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~-tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~--lp~g 478 (1228)
T KOG0055|consen 403 Y-DPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFAT-TIRENIRYGKPDATREEIEEAAKAANAHDFILK--LPDG 478 (1228)
T ss_pred c-CCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcc-cHHHHHhcCCCcccHHHHHHHHHHccHHHHHHh--hHHh
Confidence 5 6679999999999863 688999999999999987 999999998422111111122222334445544 4899
Q ss_pred ccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhc
Q 044602 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMF 301 (674)
Q Consensus 222 ~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~ 301 (674)
.||.+|++++. ||||||||++|||||++||+|||||||||+||++++..|++.|++.++ |+|.|+++|++++ .+.+
T Consensus 479 ~~T~vge~g~q-LSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~-grTTivVaHRLSt--Irna 554 (1228)
T KOG0055|consen 479 YDTLVGERGVQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASK-GRTTIVVAHRLST--IRNA 554 (1228)
T ss_pred hcccccCCCCC-CChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhc-CCeEEEEeeehhh--hhcc
Confidence 99999988774 999999999999999999999999999999999999999999998764 9999999999986 5669
Q ss_pred CEEEEEeCCEEEEecChhHHHH
Q 044602 302 DKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 302 D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
|+|++|++|+||+.|+|+|+++
T Consensus 555 D~I~v~~~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 555 DKIAVMEEGKIVEQGTHDELIA 576 (1228)
T ss_pred CEEEEEECCEEEEecCHHHHHh
Confidence 9999999999999999999975
No 56
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=2e-45 Score=430.72 Aligned_cols=263 Identities=25% Similarity=0.376 Sum_probs=208.0
Q ss_pred CcccceeeecCCCCcchhHHHHHHHHh--------hcc----------cccc-ccccCCCccccC----CCCceeEEEEe
Q 044602 18 STMGSMQIAAGSNGFGHSIEFMSQAYL--------RNR----------YSEI-DIVDESSSIEKD----RPLPIFLKFED 74 (674)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~----------~~~~-~~~~~~~~~~~~----~~~~~~l~~~~ 74 (674)
..+|++.+.+|.+++|.++++...... .+. ...+ ++.+.+.+.... ......++|+|
T Consensus 377 l~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~I~~~n 456 (686)
T TIGR03797 377 FAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEAKTDPGKLSGAIEVDR 456 (686)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcCCCCCCCceEEEEE
Confidence 456888889999999998887655321 000 0000 222222111111 11124699999
Q ss_pred EEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEE
Q 044602 75 VEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNI 154 (674)
Q Consensus 75 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I 154 (674)
|+|+|+. +.+++|+|+|++++|||.+||+||||||||||+|+|+|++ ++.+|+|
T Consensus 457 vsf~Y~~-------------------------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~-~p~~G~I 510 (686)
T TIGR03797 457 VTFRYRP-------------------------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFE-TPESGSV 510 (686)
T ss_pred EEEEcCC-------------------------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCEE
Confidence 9999852 1256999999999999999999999999999999999987 4569999
Q ss_pred EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-------CCcccc
Q 044602 155 TYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG-------LERCRH 223 (674)
Q Consensus 155 ~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~ 223 (674)
++||+++++ .+|+++|||+||+.+|++ |++|||.++.. .++ +++.++++..| +++..|
T Consensus 511 ~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~~~~~------~~~----e~i~~al~~a~l~~~i~~lp~G~d 579 (686)
T TIGR03797 511 FYDGQDLAGLDVQAVRRQLGVVLQNGRLMSG-SIFENIAGGAP------LTL----DEAWEAARMAGLAEDIRAMPMGMH 579 (686)
T ss_pred EECCEEcCcCCHHHHHhccEEEccCCccCcc-cHHHHHhcCCC------CCH----HHHHHHHHHcCcHHHHHhcccccc
Confidence 999999863 688999999999999998 99999998632 122 23444444444 356789
Q ss_pred ccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCE
Q 044602 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDK 303 (674)
Q Consensus 224 ~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 303 (674)
|.+|+.+ .+||||||||++|||||+++|+||+||||||+||+.+++.+.+.|+++ ++|+|++||+++. .+.||+
T Consensus 580 t~ige~G-~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~~--i~~~D~ 653 (686)
T TIGR03797 580 TVISEGG-GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLST--IRNADR 653 (686)
T ss_pred ccccCCC-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChHH--HHcCCE
Confidence 9998765 579999999999999999999999999999999999999999999876 5899999999864 677999
Q ss_pred EEEEeCCEEEEecChhHHHH
Q 044602 304 LLLISEGYPVYYGKARESME 323 (674)
Q Consensus 304 v~~L~~G~iv~~G~~~~~~~ 323 (674)
|++|++|++++.|+++|+++
T Consensus 654 Iivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 654 IYVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999999863
No 57
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=1.2e-44 Score=369.41 Aligned_cols=204 Identities=26% Similarity=0.516 Sum_probs=179.0
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----h-ccccEEEEccCCCCCCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----A-LKRRIGFVTQDDVLLPQLT 183 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~-~~~~igyv~Q~~~l~~~lT 183 (674)
+.+|+|+||++++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|+++.. . .++.++|++|++.+++.+|
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (232)
T cd03218 13 RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK-PDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLT 91 (232)
T ss_pred EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCc
Confidence 459999999999999999999999999999999999874 569999999998642 2 3457999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 044602 184 VEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSG 263 (674)
Q Consensus 184 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsg 263 (674)
|+||+.+....+ .....+..++++++++.+|+.+..++.+ +.||||||||++|||||+.+|++|+|||||+|
T Consensus 92 v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt~~ 163 (232)
T cd03218 92 VEENILAVLEIR---GLSKKEREEKLEELLEEFHITHLRKSKA-----SSLSGGERRRVEIARALATNPKFLLLDEPFAG 163 (232)
T ss_pred HHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCccc
Confidence 999999865432 1233445567889999999988777655 48999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 264 LDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 264 LD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|+++++.
T Consensus 164 LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 221 (232)
T cd03218 164 VDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYEGKVLAEGTPEEIA 221 (232)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEEeCHHHhh
Confidence 9999999999999999877999999999976 578899999999999999999988763
No 58
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-44 Score=378.12 Aligned_cols=221 Identities=24% Similarity=0.444 Sum_probs=187.9
Q ss_pred EEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 044602 70 LKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD 149 (674)
Q Consensus 70 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~ 149 (674)
++++||+++|+... ...+.+|+||||++++||++||+||||||||||+++|+|+++ +
T Consensus 3 l~~~~l~~~y~~~~----------------------~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~-p 59 (287)
T PRK13637 3 IKIENLTHIYMEGT----------------------PFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK-P 59 (287)
T ss_pred EEEEEEEEECCCCC----------------------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-C
Confidence 78999999885210 012469999999999999999999999999999999999874 5
Q ss_pred CccEEEECCEeCCh------hccccEEEEccCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC--c
Q 044602 150 VKGNITYNDIPYNP------ALKRRIGFVTQDDV-LLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE--R 220 (674)
Q Consensus 150 ~~G~I~~~g~~~~~------~~~~~igyv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~ 220 (674)
.+|+|.++|.++.. ..++.+|||+|++. .+...||+||+.|+.... ..++++..++++++++.+||. +
T Consensus 60 ~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~ 136 (287)
T PRK13637 60 TSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYED 136 (287)
T ss_pred CccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchh
Confidence 69999999998742 35678999999963 233469999999875432 245566667889999999997 5
Q ss_pred cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHh
Q 044602 221 CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFH 299 (674)
Q Consensus 221 ~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~ 299 (674)
..++. ++.||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+
T Consensus 137 ~~~~~-----~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~ 210 (287)
T PRK13637 137 YKDKS-----PFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAK 210 (287)
T ss_pred hccCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHH
Confidence 55654 4589999999999999999999999999999999999999999999999875 899999999975 4678
Q ss_pred hcCEEEEEeCCEEEEecChhHHH
Q 044602 300 MFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 300 ~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+||||++|++|++++.|+++++.
T Consensus 211 ~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 211 LADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred hCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999874
No 59
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=1.1e-44 Score=366.52 Aligned_cols=202 Identities=33% Similarity=0.549 Sum_probs=178.1
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh---hccccEEEEccCCCCCCCCCHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP---ALKRRIGFVTQDDVLLPQLTVE 185 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~---~~~~~igyv~Q~~~l~~~lTV~ 185 (674)
+++|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++.. ..++.++|++|++.+++.+||+
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 93 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGEL-RPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVR 93 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHH
Confidence 46999999999999999999999999999999999987 4569999999998743 4567899999999999899999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 044602 186 ETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD 265 (674)
Q Consensus 186 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD 265 (674)
||+.+..... .....+..++++++++.++|.+..++.+ .+||||||||++|||||+.+|++|+|||||+|||
T Consensus 94 ~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD 165 (220)
T cd03263 94 EHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKRA-----RTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLD 165 (220)
T ss_pred HHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhChh-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCC
Confidence 9999875433 1233444567889999999988777765 4899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHH
Q 044602 266 STSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 266 ~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
+.++..+.+.|+++++ ++|||++||++. .+.+.||++++|++|++++.|+++++
T Consensus 166 ~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 166 PASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999976 699999999986 46788999999999999999998764
No 60
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-44 Score=364.02 Aligned_cols=198 Identities=33% Similarity=0.596 Sum_probs=175.3
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETL 188 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l 188 (674)
+.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++....++.++|++|++.+++.+||+||+
T Consensus 13 ~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l 91 (210)
T cd03269 13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGII-LPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQL 91 (210)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHH
Confidence 45899999999999999999999999999999999987 45699999999987655667899999999999999999999
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTS 268 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~ 268 (674)
.+....+ .....+..++++++++.+|+++..++.+ ++||||||||++||++|+.+|++++|||||+|||+.+
T Consensus 92 ~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~ 163 (210)
T cd03269 92 VYLAQLK---GLKKEEARRRIDEWLERLELSEYANKRV-----EELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVN 163 (210)
T ss_pred HHHHHHc---CCChHHHHHHHHHHHHHcCChHHHhCcH-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHH
Confidence 9875433 1234445567899999999987777654 4899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEec
Q 044602 269 ANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYG 316 (674)
Q Consensus 269 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 316 (674)
+..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|
T Consensus 164 ~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 164 VELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEeCCEEEecC
Confidence 99999999999877899999999975 467889999999999998764
No 61
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-44 Score=369.06 Aligned_cols=203 Identities=27% Similarity=0.437 Sum_probs=179.1
Q ss_pred cceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-------hccccEEEEccCCCCCCCC
Q 044602 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-------ALKRRIGFVTQDDVLLPQL 182 (674)
Q Consensus 110 ~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-------~~~~~igyv~Q~~~l~~~l 182 (674)
++|+|+||++++||+++|+||||||||||+++|+|+++ +.+|+|.++|+++.. ..++.++|++|++.+++.+
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER-PTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSR 97 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCC
Confidence 69999999999999999999999999999999999874 569999999998742 2357899999999999999
Q ss_pred CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 044602 183 TVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTS 262 (674)
Q Consensus 183 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTs 262 (674)
|+.||+.+....+ .....+..+.++++++.+||++..++.+ ++||||||||++|||||+.+|++++|||||+
T Consensus 98 t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~lllLDEP~~ 169 (233)
T cd03258 98 TVFENVALPLEIA---GVPKAEIEERVLELLELVGLEDKADAYP-----AQLSGGQKQRVGIARALANNPKVLLCDEATS 169 (233)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCCC
Confidence 9999999875432 1234445567889999999988777654 4899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 263 GLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 263 gLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|+++++.
T Consensus 170 ~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (233)
T cd03258 170 ALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVMEKGEVVEEGTVEEVF 229 (233)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999875 899999999975 577899999999999999999987763
No 62
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-44 Score=365.31 Aligned_cols=200 Identities=31% Similarity=0.490 Sum_probs=175.8
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETL 188 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l 188 (674)
+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|+++.. .++.++||+|++.+++.+||+||+
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~-~~~~i~~v~q~~~~~~~~tv~e~l 94 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER-PTSGEVLVDGEPVTG-PGPDRGYVFQQDALLPWLTVLDNV 94 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECcc-ccCcEEEEecccccccCCCHHHHH
Confidence 469999999999999999999999999999999999874 569999999998753 467899999999999989999999
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTS 268 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~ 268 (674)
.++...+ ....++..++++++++.+||.+..++.+ ++||||||||++|||||+.+|++++|||||+|||+.+
T Consensus 95 ~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~ 166 (220)
T cd03293 95 ALGLELQ---GVPKAEARERAEELLELVGLSGFENAYP-----HQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALT 166 (220)
T ss_pred HHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHH
Confidence 9875432 1233444567889999999987777665 4899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-CCcEEEEEecCCchHHHhhcCEEEEEe--CCEEEEecChh
Q 044602 269 ANKLIQVLQKVAK-AGRTVITTIHQPSSRMFHMFDKLLLIS--EGYPVYYGKAR 319 (674)
Q Consensus 269 ~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~--~G~iv~~G~~~ 319 (674)
+..+.+.|+++.+ .|+|||++||++. ++.+.||++++|+ +|++++.++.+
T Consensus 167 ~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 167 REQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEec
Confidence 9999999999865 4899999999975 4678999999999 79999988753
No 63
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=1.5e-44 Score=365.25 Aligned_cols=214 Identities=29% Similarity=0.519 Sum_probs=184.9
Q ss_pred EEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 044602 70 LKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD 149 (674)
Q Consensus 70 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~ 149 (674)
++++|++++|+.. ....++|+|+|+++++||+++|+||||||||||+++|+|+. ++
T Consensus 2 l~~~~v~~~~~~~-----------------------~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~ 57 (218)
T cd03266 2 ITADALTKRFRDV-----------------------KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLL-EP 57 (218)
T ss_pred eEEEEEEEecCCC-----------------------CccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc-CC
Confidence 6889999977421 01126999999999999999999999999999999999987 45
Q ss_pred CccEEEECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 044602 150 VKGNITYNDIPYNP---ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRV 226 (674)
Q Consensus 150 ~~G~I~~~g~~~~~---~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 226 (674)
.+|+|.++|+++.. .+++.++|++|++.+++.+||+||+.+....+ .....+..++++++++.+||.+..++.+
T Consensus 58 ~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 134 (218)
T cd03266 58 DAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRV 134 (218)
T ss_pred CCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhhh
Confidence 69999999998753 45678999999999999999999998865432 2334455678899999999988777765
Q ss_pred cCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEE
Q 044602 227 GGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLL 306 (674)
Q Consensus 227 g~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~ 306 (674)
++||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||++. ++.+++|++++
T Consensus 135 -----~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~ 208 (218)
T cd03266 135 -----GGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVV 208 (218)
T ss_pred -----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEE
Confidence 489999999999999999999999999999999999999999999999877999999999975 57789999999
Q ss_pred EeCCEEEEec
Q 044602 307 ISEGYPVYYG 316 (674)
Q Consensus 307 L~~G~iv~~G 316 (674)
|++|++++.|
T Consensus 209 l~~G~i~~~~ 218 (218)
T cd03266 209 LHRGRVVYEG 218 (218)
T ss_pred EECCEEeecC
Confidence 9999998764
No 64
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=3.2e-45 Score=422.17 Aligned_cols=216 Identities=27% Similarity=0.404 Sum_probs=184.2
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++|+||+|.+. +++++|+|+|++++|||.+||+||||||||||+++|+|.+
T Consensus 348 ~~i~~~~vsf~~~--------------------------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~- 400 (588)
T PRK11174 348 VTIEAEDLEILSP--------------------------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL- 400 (588)
T ss_pred ceEEEEeeEEecc--------------------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-
Confidence 3699999998553 1256999999999999999999999999999999999987
Q ss_pred CCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHH-----HHHHHHHHcCC
Q 044602 148 DDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYA-----RVQMILKELGL 218 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL 218 (674)
| .+|+|.+||+++++ .+|++|+||+|++.+|++ |++|||.++.. +.++++..+ .+++.++. |
T Consensus 401 p-~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~~-----~~~~eei~~al~~a~l~~~i~~--l 471 (588)
T PRK11174 401 P-YQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHG-TLRDNVLLGNP-----DASDEQLQQALENAWVSEFLPL--L 471 (588)
T ss_pred C-CCcEEEECCEecccCCHHHHHhheEEecCCCcCCCc-CHHHHhhcCCC-----CCCHHHHHHHHHHhCHHHHHHh--c
Confidence 5 59999999999863 578999999999999998 99999998731 223332221 22333333 4
Q ss_pred CccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHH
Q 044602 219 ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMF 298 (674)
Q Consensus 219 ~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~ 298 (674)
++..||.+|+++ ..||||||||++|||||+++|+||+||||||+||+++++.+.+.|+++. +++|+|++||+++. .
T Consensus 472 p~G~dT~vge~G-~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~~--i 547 (588)
T PRK11174 472 PQGLDTPIGDQA-AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLED--L 547 (588)
T ss_pred ccccccccccCC-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChHH--H
Confidence 778899999775 4699999999999999999999999999999999999999999999986 48999999999864 6
Q ss_pred hhcCEEEEEeCCEEEEecChhHHHH
Q 044602 299 HMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 299 ~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
+.||+|++|++|++++.|+++|+++
T Consensus 548 ~~aD~Iivl~~G~i~e~G~~~eL~~ 572 (588)
T PRK11174 548 AQWDQIWVMQDGQIVQQGDYAELSQ 572 (588)
T ss_pred HhCCEEEEEeCCeEeecCCHHHHHh
Confidence 7799999999999999999999863
No 65
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=1.4e-44 Score=389.77 Aligned_cols=205 Identities=25% Similarity=0.420 Sum_probs=184.2
Q ss_pred cccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----hc----cccEEEEccCCCCC
Q 044602 108 YKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----AL----KRRIGFVTQDDVLL 179 (674)
Q Consensus 108 ~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~~----~~~igyv~Q~~~l~ 179 (674)
.+.+|+|+||++++||+++|+|||||||||||++|+|+. ++++|+|.++|+++.. .+ ++.+|||+|++.+|
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~-~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~ 83 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLI-EPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALF 83 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCC-CCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCC
Confidence 466999999999999999999999999999999999987 4569999999998753 23 67899999999999
Q ss_pred CCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeC
Q 044602 180 PQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDE 259 (674)
Q Consensus 180 ~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDE 259 (674)
|++||+||+.|+.... ..++++..+++.++++.+||++..++.+ .+|||||||||+|||||+.+|+||||||
T Consensus 84 ~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----~~LSGGq~QRV~lARAL~~~p~iLLlDE 155 (363)
T TIGR01186 84 PHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYP-----DELSGGMQQRVGLARALAAEPDILLMDE 155 (363)
T ss_pred CCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 9999999999986543 2455666788999999999988777654 5899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 260 PTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 260 PTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
||++||+.++..+.+.++++.++ |+|||++|||+. ++.++||+|++|++|+++..|+++++.
T Consensus 156 P~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~G~iv~~g~~~ei~ 218 (363)
T TIGR01186 156 AFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKAGEIVQVGTPDEIL 218 (363)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 99999999999999999999764 899999999975 578999999999999999999999875
No 66
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=2.5e-44 Score=381.08 Aligned_cols=216 Identities=26% Similarity=0.451 Sum_probs=191.9
Q ss_pred EEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 044602 70 LKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD 149 (674)
Q Consensus 70 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~ 149 (674)
++++|++++|+ .+.+|+|+||++++||+++|+||||||||||+|+|+|+++ +
T Consensus 3 l~~~~l~~~~~---------------------------~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~-~ 54 (301)
T TIGR03522 3 IRVSSLTKLYG---------------------------TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP-P 54 (301)
T ss_pred EEEEEEEEEEC---------------------------CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC-C
Confidence 78899998773 2459999999999999999999999999999999999874 5
Q ss_pred CccEEEECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 044602 150 VKGNITYNDIPYNP---ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRV 226 (674)
Q Consensus 150 ~~G~I~~~g~~~~~---~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 226 (674)
++|+|.++|+++.. ..++.+||++|++.+++.+||.||+.+.+..+ ....++..++++++++.+||.+..++.+
T Consensus 55 ~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 131 (301)
T TIGR03522 55 DSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRVEEMIELVGLRPEQHKKI 131 (301)
T ss_pred CceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCch
Confidence 69999999998753 45678999999999999999999999876543 2334455667899999999998888775
Q ss_pred cCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEE
Q 044602 227 GGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLL 306 (674)
Q Consensus 227 g~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~ 306 (674)
+ .||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++|||+++
T Consensus 132 ~-----~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~ 204 (301)
T TIGR03522 132 G-----QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVII 204 (301)
T ss_pred h-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEE
Confidence 4 8999999999999999999999999999999999999999999999965 799999999975 58899999999
Q ss_pred EeCCEEEEecChhHHHH
Q 044602 307 ISEGYPVYYGKARESME 323 (674)
Q Consensus 307 L~~G~iv~~G~~~~~~~ 323 (674)
|++|++++.|+++++.+
T Consensus 205 l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 205 INKGKIVADKKLDELSA 221 (301)
T ss_pred EECCEEEEeCCHHHHHH
Confidence 99999999999998765
No 67
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-44 Score=381.32 Aligned_cols=233 Identities=23% Similarity=0.412 Sum_probs=193.6
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++||+++|+... ...+++|+|+|+++++||++||+|+||||||||+++|+|+++
T Consensus 20 ~~l~~~nl~~~y~~~~----------------------~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~ 77 (320)
T PRK13631 20 IILRVKNLYCVFDEKQ----------------------ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK 77 (320)
T ss_pred ceEEEEeEEEEeCCCC----------------------cccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3599999999985210 012469999999999999999999999999999999999874
Q ss_pred CCCccEEEECCEeCCh--------------------hccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHH
Q 044602 148 DDVKGNITYNDIPYNP--------------------ALKRRIGFVTQDD--VLLPQLTVEETLVFAAFLRLPGNMNRQQK 205 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~--------------------~~~~~igyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~ 205 (674)
+.+|+|.++|+++.. .+++.+|||+|++ .+++. ||+||+.|+.... ..+.++.
T Consensus 78 -p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~-tv~eni~~~~~~~---~~~~~~~ 152 (320)
T PRK13631 78 -SKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD-TIEKDIMFGPVAL---GVKKSEA 152 (320)
T ss_pred -CCCCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECchhccccc-hHHHHHHhhHHhc---CCCHHHH
Confidence 569999999987531 3567899999986 57765 9999999875322 2345555
Q ss_pred HHHHHHHHHHcCCC-ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCc
Q 044602 206 YARVQMILKELGLE-RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGR 284 (674)
Q Consensus 206 ~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~ 284 (674)
.++++++++.+||+ +..++. +.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+
T Consensus 153 ~~~~~~~l~~~gL~~~~~~~~-----~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~ 227 (320)
T PRK13631 153 KKLAKFYLNKMGLDDSYLERS-----PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNK 227 (320)
T ss_pred HHHHHHHHHHcCCChhHhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCC
Confidence 67889999999996 455554 458999999999999999999999999999999999999999999999987799
Q ss_pred EEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH---HHHHhCCCCCC
Q 044602 285 TVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM---EYFSSLGFIPE 333 (674)
Q Consensus 285 tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~---~~f~~~g~~~~ 333 (674)
|||++||+++ .+.+.||++++|++|++++.|+++++. +.++..|+.+|
T Consensus 228 TiiivtHd~~-~~~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p 278 (320)
T PRK13631 228 TVFVITHTME-HVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVP 278 (320)
T ss_pred EEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCC
Confidence 9999999975 467899999999999999999999874 23444555543
No 68
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-44 Score=378.06 Aligned_cols=231 Identities=25% Similarity=0.428 Sum_probs=192.4
Q ss_pred EEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 044602 70 LKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD 149 (674)
Q Consensus 70 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~ 149 (674)
++++||+++|+... ...+++|+|||+++++||+++|+||||||||||+++|+|+.+ +
T Consensus 3 l~~~~l~~~y~~~~----------------------~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p 59 (290)
T PRK13634 3 ITFQKVEHRYQYKT----------------------PFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ-P 59 (290)
T ss_pred EEEEEEEEEECCCC----------------------cccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-C
Confidence 78999999885211 012469999999999999999999999999999999999874 5
Q ss_pred CccEEEECCEeCCh--------hccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 044602 150 VKGNITYNDIPYNP--------ALKRRIGFVTQDD--VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE 219 (674)
Q Consensus 150 ~~G~I~~~g~~~~~--------~~~~~igyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 219 (674)
.+|+|.++|+++.. ..++.+|||+|++ .+++ .||.||+.|+.... ..+.++..++++++++.+||.
T Consensus 60 ~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~ 135 (290)
T PRK13634 60 TSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFE-ETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLP 135 (290)
T ss_pred CCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhh-hhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCC
Confidence 69999999998731 3466899999986 4564 69999999875432 234555567889999999997
Q ss_pred -ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHH
Q 044602 220 -RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRM 297 (674)
Q Consensus 220 -~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i 297 (674)
+..++.+ +.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++. ++
T Consensus 136 ~~~~~~~~-----~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~ 209 (290)
T PRK13634 136 EELLARSP-----FELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DA 209 (290)
T ss_pred hhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH
Confidence 5566654 589999999999999999999999999999999999999999999999765 999999999975 57
Q ss_pred HhhcCEEEEEeCCEEEEecChhHHH---HHHHhCCCCCC
Q 044602 298 FHMFDKLLLISEGYPVYYGKARESM---EYFSSLGFIPE 333 (674)
Q Consensus 298 ~~~~D~v~~L~~G~iv~~G~~~~~~---~~f~~~g~~~~ 333 (674)
.++||||++|++|++++.|+++++. +.+...+..+|
T Consensus 210 ~~~~drv~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 248 (290)
T PRK13634 210 ARYADQIVVMHKGTVFLQGTPREIFADPDELEAIGLDLP 248 (290)
T ss_pred HHhCCEEEEEECCEEEEECCHHHHhcCHHHHHHCCCCCC
Confidence 8899999999999999999998874 23444455443
No 69
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=2e-44 Score=363.03 Aligned_cols=198 Identities=29% Similarity=0.483 Sum_probs=174.2
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEE 186 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e 186 (674)
+++|+|+|+++++||+++|+||||||||||+++|+|+++ +.+|+|.++|.++.. ..++.++|++|++.+++.+||+|
T Consensus 13 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 91 (213)
T cd03301 13 VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE-PTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYD 91 (213)
T ss_pred eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHH
Confidence 458999999999999999999999999999999999874 569999999998753 23457999999999998899999
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 044602 187 TLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDS 266 (674)
Q Consensus 187 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~ 266 (674)
|+.++.... ....++..++++++++.+||.+..++.+ ++||||||||++|||+|+.+|++++|||||+|||+
T Consensus 92 ~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~ 163 (213)
T cd03301 92 NIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRKP-----KQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDA 163 (213)
T ss_pred HHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 999875432 2234455667889999999988777765 48999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEec
Q 044602 267 TSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYG 316 (674)
Q Consensus 267 ~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 316 (674)
.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|
T Consensus 164 ~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 164 KLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEecC
Confidence 9999999999999874 899999999975 577889999999999999876
No 70
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=3.5e-45 Score=429.31 Aligned_cols=266 Identities=24% Similarity=0.398 Sum_probs=212.0
Q ss_pred CCcccceeeecCCCCcchhHHHHHHHHh---------------------hccccccccccCCCcccc--C----CCCcee
Q 044602 17 PSTMGSMQIAAGSNGFGHSIEFMSQAYL---------------------RNRYSEIDIVDESSSIEK--D----RPLPIF 69 (674)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~--~----~~~~~~ 69 (674)
+..+|++.+.+|..+.|.++++..+... .++.. ++.+.+++... . ......
T Consensus 386 il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~--~il~~~~e~~~~~~~~~~~~~~~~ 463 (694)
T TIGR03375 386 IVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLD--ELMQLPVERPEGTRFLHRPRLQGE 463 (694)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHcCCCCCCCCCCCCCCCCccce
Confidence 4567889999999999999888765421 00100 22222211110 0 112236
Q ss_pred EEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 044602 70 LKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD 149 (674)
Q Consensus 70 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~ 149 (674)
++|+||+|+|+. +.+++|+|+|++++|||.+||+||||||||||+|+|+|++ ++
T Consensus 464 I~~~~vsf~Y~~-------------------------~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~-~p 517 (694)
T TIGR03375 464 IEFRNVSFAYPG-------------------------QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLY-QP 517 (694)
T ss_pred EEEEEEEEEeCC-------------------------CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CC
Confidence 999999999852 1256999999999999999999999999999999999987 55
Q ss_pred CccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-------C
Q 044602 150 VKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG-------L 218 (674)
Q Consensus 150 ~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L 218 (674)
.+|+|.+||+++++ .+|+.++||+|++.+|++ |++|||.++.. +.+++ ++.++++..+ +
T Consensus 518 ~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~-TI~eNi~~~~~-----~~~~~----~i~~a~~~~~l~~~i~~l 587 (694)
T TIGR03375 518 TEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYG-TLRDNIALGAP-----YADDE----EILRAAELAGVTEFVRRH 587 (694)
T ss_pred CCceEEECCEEhhhCCHHHHHhccEEECCChhhhhh-hHHHHHhCCCC-----CCCHH----HHHHHHHHcChHHHHHhC
Confidence 69999999999863 578999999999999998 99999998631 12332 2333333333 4
Q ss_pred CccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHH
Q 044602 219 ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMF 298 (674)
Q Consensus 219 ~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~ 298 (674)
++..||.+|+.+ ..||||||||++|||||+++|+||+||||||+||+.++..+.+.|+++.+ ++|+|++||+++. .
T Consensus 588 p~gl~T~i~e~G-~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~iiItHrl~~--~ 663 (694)
T TIGR03375 588 PDGLDMQIGERG-RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA-GKTLVLVTHRTSL--L 663 (694)
T ss_pred cccccceecCCC-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHH--H
Confidence 678899999765 46999999999999999999999999999999999999999999999864 8999999999864 6
Q ss_pred hhcCEEEEEeCCEEEEecChhHHHHH
Q 044602 299 HMFDKLLLISEGYPVYYGKARESMEY 324 (674)
Q Consensus 299 ~~~D~v~~L~~G~iv~~G~~~~~~~~ 324 (674)
+.||+|++|++|++++.|+++|+++.
T Consensus 664 ~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 664 DLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred HhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 78999999999999999999998753
No 71
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-44 Score=369.45 Aligned_cols=207 Identities=30% Similarity=0.511 Sum_probs=177.1
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-------hccccEEEEccCCCCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-------ALKRRIGFVTQDDVLLPQ 181 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-------~~~~~igyv~Q~~~l~~~ 181 (674)
+.+|+|+|+++++||+++|+||||||||||+|+|+|++ ++.+|+|.++|+++.. ..++.++|++|++.+++.
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLV-EPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIER 92 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-CCCCceEEECCEeccccCHhHHHHHHhccEEEcccCccccc
Confidence 45999999999999999999999999999999999987 4569999999998642 246689999999999998
Q ss_pred CCHHHHHHHHHhhcC-----CCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEE
Q 044602 182 LTVEETLVFAAFLRL-----PGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLL 256 (674)
Q Consensus 182 lTV~e~l~~~~~~~~-----~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~ill 256 (674)
+||+||+.++..... .......+..++++++++.++|.+..++.+ .+||||||||++|||||+.+|++|+
T Consensus 93 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~lll 167 (241)
T cd03256 93 LSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRA-----DQLSGGQQQRVAIARALMQQPKLIL 167 (241)
T ss_pred CcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCc-----ccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999987642110 001112334567889999999987766654 4899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 257 LDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 257 LDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|+++++.
T Consensus 168 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 168 ADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred EeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 99999999999999999999999764 899999999976 477799999999999999999988763
No 72
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.4e-44 Score=373.17 Aligned_cols=217 Identities=26% Similarity=0.410 Sum_probs=186.8
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++++|+. .+.+|+|+|+++++||+++|+||||||||||+++|+|.++
T Consensus 4 ~l~~~~l~~~~~~--------------------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~- 56 (274)
T PRK13647 4 IIEVEDLHFRYKD--------------------------GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL- 56 (274)
T ss_pred eEEEEEEEEEeCC--------------------------CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-
Confidence 4889999997741 1458999999999999999999999999999999999874
Q ss_pred CCccEEEECCEeCCh----hccccEEEEccCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 044602 149 DVKGNITYNDIPYNP----ALKRRIGFVTQDDV-LLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRH 223 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 223 (674)
+.+|+|.++|+++.. ..++.+|||+|++. .++..||.||+.|+.... ...+.+..++++++++.+||.+..+
T Consensus 57 p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~ 133 (274)
T PRK13647 57 PQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRD 133 (274)
T ss_pred CCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhc
Confidence 569999999998753 34678999999963 344579999999875322 2344455567899999999987777
Q ss_pred ccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCE
Q 044602 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDK 303 (674)
Q Consensus 224 ~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 303 (674)
+.+ .+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||+
T Consensus 134 ~~~-----~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~ 207 (274)
T PRK13647 134 KPP-----YHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQ 207 (274)
T ss_pred CCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCE
Confidence 665 489999999999999999999999999999999999999999999999877999999999975 46789999
Q ss_pred EEEEeCCEEEEecChhHH
Q 044602 304 LLLISEGYPVYYGKARES 321 (674)
Q Consensus 304 v~~L~~G~iv~~G~~~~~ 321 (674)
+++|++|++++.|+++++
T Consensus 208 i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 208 VIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred EEEEECCEEEEECCHHHh
Confidence 999999999999998754
No 73
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=4.6e-44 Score=369.19 Aligned_cols=218 Identities=28% Similarity=0.486 Sum_probs=187.9
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|+ .+.+|+|+||++++||+++|+||||||||||+++|+|.+ +
T Consensus 3 ~l~~~~l~~~~~---------------------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~ 54 (250)
T PRK11264 3 AIEVKNLVKKFH---------------------------GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLE-Q 54 (250)
T ss_pred cEEEeceEEEEC---------------------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C
Confidence 478999998773 245899999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEeCCh------------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHc
Q 044602 149 DVKGNITYNDIPYNP------------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKEL 216 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~------------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l 216 (674)
+.+|+|.++|+++.. ..++.++||+|++.+++.+||.||+.++..... .....+..++++++++.+
T Consensus 55 ~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~ 132 (250)
T PRK11264 55 PEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKV 132 (250)
T ss_pred CCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHc
Confidence 569999999987641 245689999999999998999999988643111 123444556788999999
Q ss_pred CCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchH
Q 044602 217 GLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSR 296 (674)
Q Consensus 217 gL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~ 296 (674)
||.+..++.+ ++||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. +
T Consensus 133 gl~~~~~~~~-----~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~ 206 (250)
T PRK11264 133 GLAGKETSYP-----RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-F 206 (250)
T ss_pred CCcchhhCCh-----hhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-H
Confidence 9987766654 489999999999999999999999999999999999999999999999877999999999975 4
Q ss_pred HHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 297 MFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 297 i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+.++||++++|++|++++.|+++++.
T Consensus 207 ~~~~~d~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 207 ARDVADRAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred HHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 77899999999999999999988763
No 74
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-44 Score=374.72 Aligned_cols=228 Identities=24% Similarity=0.413 Sum_probs=193.3
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|+.. +.+.+|+|+|++|++||+++|+||||||||||+++|+|+++
T Consensus 4 ~l~~~~l~~~~~~~------------------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~- 58 (279)
T PRK13650 4 IIEVKNLTFKYKED------------------------QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE- 58 (279)
T ss_pred eEEEEeEEEEcCCC------------------------CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-
Confidence 48999999987421 12458999999999999999999999999999999999874
Q ss_pred CCccEEEECCEeCCh----hccccEEEEccCC-CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 044602 149 DVKGNITYNDIPYNP----ALKRRIGFVTQDD-VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRH 223 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~----~~~~~igyv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 223 (674)
+.+|+|.++|.++.. ..++.+|||+|++ .+++..||+||+.|+.... ..++++..++++++++.+||.+..+
T Consensus 59 p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~ 135 (279)
T PRK13650 59 AESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKE 135 (279)
T ss_pred CCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhh
Confidence 569999999998752 4567899999997 4677789999999875432 2455566678899999999988777
Q ss_pred ccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcC
Q 044602 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFD 302 (674)
Q Consensus 224 ~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D 302 (674)
+.+ .+||||||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||++.. + ..||
T Consensus 136 ~~~-----~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~-~-~~~d 208 (279)
T PRK13650 136 REP-----ARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDE-V-ALSD 208 (279)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCC
Confidence 664 489999999999999999999999999999999999999999999999875 9999999999764 5 5799
Q ss_pred EEEEEeCCEEEEecChhHHHH---HHHhCCCC
Q 044602 303 KLLLISEGYPVYYGKARESME---YFSSLGFI 331 (674)
Q Consensus 303 ~v~~L~~G~iv~~G~~~~~~~---~f~~~g~~ 331 (674)
++++|++|+++..|+++++.+ .++..|+.
T Consensus 209 ri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 240 (279)
T PRK13650 209 RVLVMKNGQVESTSTPRELFSRGNDLLQLGLD 240 (279)
T ss_pred EEEEEECCEEEEECCHHHHHcChHHHHHcCCC
Confidence 999999999999999988642 23444544
No 75
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=8e-45 Score=418.35 Aligned_cols=267 Identities=23% Similarity=0.310 Sum_probs=207.7
Q ss_pred CcccceeeecCCCCcchhHHHHHHHHh------------------hcccccc-ccccCCCcc--cc--CCCCceeEEEEe
Q 044602 18 STMGSMQIAAGSNGFGHSIEFMSQAYL------------------RNRYSEI-DIVDESSSI--EK--DRPLPIFLKFED 74 (674)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~-~~~~~~~~~--~~--~~~~~~~l~~~~ 74 (674)
..+|++.+.+|.+++|.++.+...... ......+ ++.+.+++. .. ....+..++++|
T Consensus 267 ~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 346 (582)
T PRK11176 267 LYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGKRVIERAKGDIEFRN 346 (582)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCcCCCCCCCeEEEEE
Confidence 456777888999999988766544220 0000000 222211110 00 111223699999
Q ss_pred EEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEE
Q 044602 75 VEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNI 154 (674)
Q Consensus 75 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I 154 (674)
|+|+|+. +.+++|+|+|+++++||.+||+||||||||||+|+|+|++ ++.+|+|
T Consensus 347 vsf~y~~-------------------------~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~-~p~~G~I 400 (582)
T PRK11176 347 VTFTYPG-------------------------KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFY-DIDEGEI 400 (582)
T ss_pred EEEecCC-------------------------CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhcc-CCCCceE
Confidence 9998852 2256999999999999999999999999999999999987 4569999
Q ss_pred EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-------CCcccc
Q 044602 155 TYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG-------LERCRH 223 (674)
Q Consensus 155 ~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~ 223 (674)
.+||+++++ .+++.++||+||+.+|++ |++|||.++. +...+++ +++++++..| |++..|
T Consensus 401 ~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~----~~~~~~~----~i~~al~~~~l~~~i~~lp~Gld 471 (582)
T PRK11176 401 LLDGHDLRDYTLASLRNQVALVSQNVHLFND-TIANNIAYAR----TEQYSRE----QIEEAARMAYAMDFINKMDNGLD 471 (582)
T ss_pred EECCEEhhhcCHHHHHhhceEEccCceeecc-hHHHHHhcCC----CCCCCHH----HHHHHHHHhCcHHHHHhcccccC
Confidence 999999763 578899999999999997 9999998862 1112332 3344444433 467889
Q ss_pred ccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCE
Q 044602 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDK 303 (674)
Q Consensus 224 ~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 303 (674)
|.+|+.+ +.||||||||++|||||+++|+||+||||||+||+.++..+.+.|+++. +++|+|++||+++ ..+.||+
T Consensus 472 t~ig~~g-~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~--~~~~~D~ 547 (582)
T PRK11176 472 TVIGENG-VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEKADE 547 (582)
T ss_pred ceeCCCC-CcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCE
Confidence 9999765 5799999999999999999999999999999999999999999999985 4799999999985 4678999
Q ss_pred EEEEeCCEEEEecChhHHHH
Q 044602 304 LLLISEGYPVYYGKARESME 323 (674)
Q Consensus 304 v~~L~~G~iv~~G~~~~~~~ 323 (674)
|++|++|++++.|+++++++
T Consensus 548 Ii~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 548 ILVVEDGEIVERGTHAELLA 567 (582)
T ss_pred EEEEECCEEEEeCCHHHHHh
Confidence 99999999999999998863
No 76
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.2e-44 Score=367.91 Aligned_cols=204 Identities=29% Similarity=0.533 Sum_probs=178.6
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTV 184 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV 184 (674)
+.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. ..++.++|++|++.+++.+||
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 92 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLI-EPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTV 92 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcH
Confidence 45899999999999999999999999999999999987 4569999999998642 346689999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc--cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 044602 185 EETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER--CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTS 262 (674)
Q Consensus 185 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTs 262 (674)
+||+.+..... ....++..++++++++.+||.+ ..++.+ ++||||||||++|||||+.+|++|+|||||+
T Consensus 93 ~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~ 164 (242)
T cd03295 93 EENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADRYP-----HELSGGQQQRVGVARALAADPPLLLMDEPFG 164 (242)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCcc
Confidence 99999875432 2234455567899999999985 555543 5899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 263 GLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 263 gLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|+++++.
T Consensus 165 ~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 224 (242)
T cd03295 165 ALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKNGEIVQVGTPDEIL 224 (242)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 99999999999999999875 899999999975 477899999999999999999988763
No 77
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=5.2e-44 Score=366.66 Aligned_cols=205 Identities=27% Similarity=0.485 Sum_probs=179.2
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh------hccccEEEEccCCCCCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQL 182 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~l 182 (674)
+.+|+|+||++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++.. ..++.++|++|++.+++.+
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 92 (240)
T PRK09493 14 TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLE-EITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHL 92 (240)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCC
Confidence 45999999999999999999999999999999999987 4569999999998742 3466899999999999989
Q ss_pred CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 044602 183 TVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTS 262 (674)
Q Consensus 183 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTs 262 (674)
||+||+.++.... ......+..++++++++.+||++..++.+ +.||||||||++|||||+.+|++++|||||+
T Consensus 93 tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEP~~ 165 (240)
T PRK09493 93 TALENVMFGPLRV--RGASKEEAEKQARELLAKVGLAERAHHYP-----SELSGGQQQRVAIARALAVKPKLMLFDEPTS 165 (240)
T ss_pred cHHHHHHhHHHHh--cCCCHHHHHHHHHHHHHHcCChHHHhcCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999998864211 12234455567889999999987777654 4899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 263 GLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 263 gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
|||+.++..+.+.|++++++|+|+|++||++. ++.++||++++|++|++++.|+++++.
T Consensus 166 ~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 166 ALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFIDKGRIAEDGDPQVLI 224 (240)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 99999999999999999877999999999976 467889999999999999999988763
No 78
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=3.1e-44 Score=391.69 Aligned_cols=220 Identities=25% Similarity=0.430 Sum_probs=191.0
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|+ .+.+|+|+||++++||+++|+||||||||||||+|+|+++
T Consensus 3 ~L~~~nls~~y~---------------------------~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~- 54 (402)
T PRK09536 3 MIDVSDLSVEFG---------------------------DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT- 54 (402)
T ss_pred eEEEeeEEEEEC---------------------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC-
Confidence 488999998773 2569999999999999999999999999999999999884
Q ss_pred CCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHHHcCCCcccc
Q 044602 149 DVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPG-NMNRQQKYARVQMILKELGLERCRH 223 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~ 223 (674)
+.+|+|.++|+++.. .+++++|||+|++.+++.+||+||+.++....... ....++..++++++++.+||.+..+
T Consensus 55 p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~ 134 (402)
T PRK09536 55 PTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFAD 134 (402)
T ss_pred CCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhc
Confidence 569999999998753 46778999999999988899999999864321100 0012344567899999999998888
Q ss_pred ccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCE
Q 044602 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDK 303 (674)
Q Consensus 224 ~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 303 (674)
+.+ ++||||||||++|||||+++|++|||||||+|||+.++.++++.|++++++|+|||+++|++. ++.++|||
T Consensus 135 ~~~-----~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adr 208 (402)
T PRK09536 135 RPV-----TSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDE 208 (402)
T ss_pred CCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCE
Confidence 765 489999999999999999999999999999999999999999999999877999999999976 57899999
Q ss_pred EEEEeCCEEEEecChhHHH
Q 044602 304 LLLISEGYPVYYGKARESM 322 (674)
Q Consensus 304 v~~L~~G~iv~~G~~~~~~ 322 (674)
+++|++|++++.|++++++
T Consensus 209 ii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 209 LVLLADGRVRAAGPPADVL 227 (402)
T ss_pred EEEEECCEEEEecCHHHHh
Confidence 9999999999999999853
No 79
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.9e-44 Score=376.97 Aligned_cols=221 Identities=22% Similarity=0.423 Sum_probs=187.8
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|+... .....+|+|+|+++++||++||+||||||||||+++|+|.++
T Consensus 2 ~i~~~~l~~~y~~~~----------------------~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~- 58 (305)
T PRK13651 2 QIKVKNIVKIFNKKL----------------------PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL- 58 (305)
T ss_pred EEEEEEEEEEECCCC----------------------CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-
Confidence 378999999885311 012459999999999999999999999999999999999884
Q ss_pred CCccEEEECCEeCC----------------------------hhccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCC
Q 044602 149 DVKGNITYNDIPYN----------------------------PALKRRIGFVTQDD--VLLPQLTVEETLVFAAFLRLPG 198 (674)
Q Consensus 149 ~~~G~I~~~g~~~~----------------------------~~~~~~igyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~ 198 (674)
+.+|+|.++|.+.. ...++.+|||+|++ .++ ..||+||+.|+....
T Consensus 59 p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~--- 134 (305)
T PRK13651 59 PDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSM--- 134 (305)
T ss_pred CCCcEEEEeceecccccccccccccccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHc---
Confidence 46899999987541 13467899999985 445 469999999875432
Q ss_pred CCCHHHHHHHHHHHHHHcCCC-ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 044602 199 NMNRQQKYARVQMILKELGLE-RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQ 277 (674)
Q Consensus 199 ~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~ 277 (674)
..++++..++++++++.+||. +..++.+ ..||||||||++||++|+.+|++|||||||+|||+.++..+++.|+
T Consensus 135 ~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~ 209 (305)
T PRK13651 135 GVSKEEAKKRAAKYIELVGLDESYLQRSP-----FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFD 209 (305)
T ss_pred CCCHHHHHHHHHHHHHHcCCChhhhhCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 245566677899999999996 5666654 5899999999999999999999999999999999999999999999
Q ss_pred HHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 278 KVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 278 ~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+++++|+|||++||++. .+.+.||||++|++|++++.|+++++.
T Consensus 210 ~l~~~g~tiiivtHd~~-~~~~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 210 NLNKQGKTIILVTHDLD-NVLEWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred HHHHCCCEEEEEeeCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 99877999999999975 477899999999999999999999874
No 80
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=2.4e-44 Score=366.01 Aligned_cols=204 Identities=28% Similarity=0.436 Sum_probs=174.8
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC----CCCccEEEECCEeCCh------hccccEEEEccCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT----DDVKGNITYNDIPYNP------ALKRRIGFVTQDDVL 178 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~----~~~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l 178 (674)
+.+|+|+||++++||+++|+||||||||||+|+|+|..+ ++.+|+|.++|+++.. ..++.++|++|++.+
T Consensus 13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 92 (227)
T cd03260 13 KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNP 92 (227)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchh
Confidence 469999999999999999999999999999999999872 3469999999998642 346689999999988
Q ss_pred CCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEe
Q 044602 179 LPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLD 258 (674)
Q Consensus 179 ~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLD 258 (674)
+ .+||+||+.++..... .....+..++++++++.+||.+..++.+. +.+||||||||++|||||+.+|++|+||
T Consensus 93 ~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~~qrv~la~al~~~p~llllD 166 (227)
T cd03260 93 F-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---ALGLSGGQQQRLCLARALANEPEVLLLD 166 (227)
T ss_pred c-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---cccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 8 7899999998754321 11222345678899999999876665430 3589999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhH
Q 044602 259 EPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARE 320 (674)
Q Consensus 259 EPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 320 (674)
|||+|||+.++..+.+.|++++++ +|||++||++. .+.++||++++|++|++++.|++++
T Consensus 167 EPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 167 EPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred CCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEeCCEEEEecCccc
Confidence 999999999999999999999876 99999999975 4778999999999999999998765
No 81
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=3e-44 Score=363.86 Aligned_cols=202 Identities=30% Similarity=0.530 Sum_probs=175.0
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----h-ccccEEEEccCCCCCCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----A-LKRRIGFVTQDDVLLPQLT 183 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~-~~~~igyv~Q~~~l~~~lT 183 (674)
+++|+|+||++++||+++|+||||||||||+++|+|+.+ +.+|+|.++|+++.. . .++.++|++|++.+++.+|
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (222)
T cd03224 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP-PRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELT 91 (222)
T ss_pred eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCc
Confidence 458999999999999999999999999999999999874 569999999988742 1 3567999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 044602 184 VEETLVFAAFLRLPGNMNRQQKYARVQMILKEL-GLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTS 262 (674)
Q Consensus 184 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTs 262 (674)
++||+.+...... ..+..++++++++.+ ++.+..++.+ ++||||||||++|||||+.+|++|+|||||+
T Consensus 92 ~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~ 161 (222)
T cd03224 92 VEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQLA-----GTLSGGEQQMLAIARALMSRPKLLLLDEPSE 161 (222)
T ss_pred HHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCch-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCcc
Confidence 9999998754321 123345667788888 5776666654 4899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 263 GLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 263 gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|+++++.
T Consensus 162 ~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 162 GLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 99999999999999999877899999999975 478899999999999999999987753
No 82
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-44 Score=375.37 Aligned_cols=212 Identities=25% Similarity=0.413 Sum_probs=183.4
Q ss_pred ccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----h----ccccEEEE
Q 044602 101 QLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----A----LKRRIGFV 172 (674)
Q Consensus 101 ~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~----~~~~igyv 172 (674)
++...++.+.+|+|+|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.++.. . .++.++|+
T Consensus 29 ~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~-p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v 107 (269)
T cd03294 29 EILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE-PTSGKVLIDGQDIAAMSRKELRELRRKKISMV 107 (269)
T ss_pred hhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCeEEEECCEEccccChhhhhhhhcCcEEEE
Confidence 44444566789999999999999999999999999999999999874 569999999998742 1 13579999
Q ss_pred ccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCC
Q 044602 173 TQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDP 252 (674)
Q Consensus 173 ~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P 252 (674)
+|++.+++.+||+||+.+..... .....+..++++++++.+||.+..++.+ ++||||||||++|||||+.+|
T Consensus 108 ~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~lAral~~~p 179 (269)
T cd03294 108 FQSFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYP-----DELSGGMQQRVGLARALAVDP 179 (269)
T ss_pred ecCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCc-----ccCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999875432 1233445567889999999988777765 489999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 253 SLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 253 ~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|+++++.
T Consensus 180 ~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 180 DILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred CEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999764 899999999975 477899999999999999999988764
No 83
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=6.3e-45 Score=428.27 Aligned_cols=263 Identities=24% Similarity=0.384 Sum_probs=208.1
Q ss_pred CCcccceeeecCCCCcchhHHHHHHHHh---------------------hccccccccccCCCccc--c-------C---
Q 044602 17 PSTMGSMQIAAGSNGFGHSIEFMSQAYL---------------------RNRYSEIDIVDESSSIE--K-------D--- 63 (674)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~--~-------~--- 63 (674)
...+|++++.+|.+++|.++++...... .++.. ++.+.+++.. . .
T Consensus 394 il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~--~il~~~~e~~~~~~~~~~~~~~~~ 471 (710)
T TIGR03796 394 ILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLD--DVLRNPVDPLLEEEEAPAAGSEPS 471 (710)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHcCCCccccccccccccccccC
Confidence 4566888899999999999887655431 00100 2222111110 0 0
Q ss_pred CCCceeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHH
Q 044602 64 RPLPIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVG 143 (674)
Q Consensus 64 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~ 143 (674)
......++++||+|+|+. ..+++|+|+|+++++||.+||+||||||||||+|+|+
T Consensus 472 ~~~~~~I~~~~vsf~y~~-------------------------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~ 526 (710)
T TIGR03796 472 PRLSGYVELRNITFGYSP-------------------------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVA 526 (710)
T ss_pred CCCCCeEEEEEEEEecCC-------------------------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 111236899999998852 1256999999999999999999999999999999999
Q ss_pred cCCCCCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC--
Q 044602 144 GRLTDDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG-- 217 (674)
Q Consensus 144 G~~~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-- 217 (674)
|++ ++.+|+|.+||.++++ .+|+++|||+|++.+|++ |++|||.++.. ..+++ ++.++++..|
T Consensus 527 gl~-~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-Ti~eNi~l~~~-----~~~~~----~i~~al~~~~l~ 595 (710)
T TIGR03796 527 GLY-QPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEG-TVRDNLTLWDP-----TIPDA----DLVRACKDAAIH 595 (710)
T ss_pred cCC-CCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhc-cHHHHhhCCCC-----CCCHH----HHHHHHHHhCCH
Confidence 987 4569999999999853 588999999999999987 99999987521 12322 2334444433
Q ss_pred -----CCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecC
Q 044602 218 -----LERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQ 292 (674)
Q Consensus 218 -----L~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~ 292 (674)
+++..||.+|+.+ .+||||||||++|||||+++|+||+||||||+||+.++..+.+.|++ .++|+|++||+
T Consensus 596 ~~i~~lp~gl~t~i~e~G-~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHr 671 (710)
T TIGR03796 596 DVITSRPGGYDAELAEGG-ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHR 671 (710)
T ss_pred HHHHhCcCcccceeccCC-CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecC
Confidence 4667899998765 57999999999999999999999999999999999999999999976 48999999999
Q ss_pred CchHHHhhcCEEEEEeCCEEEEecChhHHHH
Q 044602 293 PSSRMFHMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 293 ~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
++. .+.||+|++|++|++++.|+++|+++
T Consensus 672 l~~--i~~~D~Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 672 LST--IRDCDEIIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred HHH--HHhCCEEEEEeCCEEEEecCHHHHHH
Confidence 864 57799999999999999999999864
No 84
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=7.9e-44 Score=371.57 Aligned_cols=218 Identities=23% Similarity=0.449 Sum_probs=188.6
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|. .+.+|+|+||++++||+++|+||||||||||+++|+|..+
T Consensus 7 ~l~~~~l~~~~~---------------------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~- 58 (269)
T PRK11831 7 LVDMRGVSFTRG---------------------------NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA- 58 (269)
T ss_pred eEEEeCeEEEEC---------------------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-
Confidence 589999998763 2458999999999999999999999999999999999874
Q ss_pred CCccEEEECCEeCCh-------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 044602 149 DVKGNITYNDIPYNP-------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC 221 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~-------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 221 (674)
+.+|+|.++|+++.. ..++.++|++|++.+++.+||.||+.+...... .....+..+++.++++.+||.+.
T Consensus 59 p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~ 136 (269)
T PRK11831 59 PDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGA 136 (269)
T ss_pred CCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhh
Confidence 569999999998742 235679999999999999999999988643211 12344445678889999999887
Q ss_pred ccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhh
Q 044602 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHM 300 (674)
Q Consensus 222 ~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~ 300 (674)
.++.+ ..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++
T Consensus 137 ~~~~~-----~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~ 210 (269)
T PRK11831 137 AKLMP-----SELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSI 210 (269)
T ss_pred hhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHh
Confidence 77765 489999999999999999999999999999999999999999999999765 899999999975 47889
Q ss_pred cCEEEEEeCCEEEEecChhHHH
Q 044602 301 FDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 301 ~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
||++++|++|++++.|+++++.
T Consensus 211 ~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 211 ADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred hCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999988763
No 85
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-45 Score=389.78 Aligned_cols=272 Identities=28% Similarity=0.399 Sum_probs=218.3
Q ss_pred CcccceeeecCCCCcchhHHHHHHHHh-------------------hccccccccccCCCcccc-C-----CCCceeEEE
Q 044602 18 STMGSMQIAAGSNGFGHSIEFMSQAYL-------------------RNRYSEIDIVDESSSIEK-D-----RPLPIFLKF 72 (674)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~-~-----~~~~~~l~~ 72 (674)
+-..+|.+..+..++|..+-+..+... -++.+.+|+.+++++..+ + ......++|
T Consensus 461 sll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~~~~G~i~f 540 (790)
T KOG0056|consen 461 SLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQGKIEF 540 (790)
T ss_pred hheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCCccccCCeEEE
Confidence 445678889999999987777655421 112223355555443221 1 123357999
Q ss_pred EeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCcc
Q 044602 73 EDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKG 152 (674)
Q Consensus 73 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G 152 (674)
+||+|.|.. ++++|+||||++.||+.+|++||||+||||++++|-... +..+|
T Consensus 541 snvtF~Y~p--------------------------~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRff-dv~sG 593 (790)
T KOG0056|consen 541 SNVTFAYDP--------------------------GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFF-DVNSG 593 (790)
T ss_pred EEeEEecCC--------------------------CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHh-hccCc
Confidence 999998852 378999999999999999999999999999999999544 66799
Q ss_pred EEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC
Q 044602 153 NITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGG 228 (674)
Q Consensus 153 ~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 228 (674)
.|.+||++++. .+|+.||.||||..+|++ |+..||.|+..-...+++..+.+.+.+++- .++.++.++|+||+
T Consensus 594 sI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNd-TI~yNIryak~~AsneevyaAAkAA~IHdr--Il~fPegY~t~VGE 670 (790)
T KOG0056|consen 594 SITIDGQDIRNVTQSSLRSSIGVVPQDTVLFND-TILYNIRYAKPSASNEEVYAAAKAAQIHDR--ILQFPEGYNTRVGE 670 (790)
T ss_pred eEEEcCchHHHHHHHHHHHhcCcccCcceeecc-eeeeheeecCCCCChHHHHHHHHHhhHHHH--HhcCchhhhhhhhh
Confidence 99999999864 689999999999999998 999999997432221112222222233332 26779999999999
Q ss_pred CccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEe
Q 044602 229 GFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLIS 308 (674)
Q Consensus 229 ~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 308 (674)
++.+ |||||||||+|||+++++|.|++|||+||+||..+++.|...|.++++ ++|.|++.|+.++ .-.+|.|++++
T Consensus 671 RGLk-LSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLST--ivnAD~ILvi~ 746 (790)
T KOG0056|consen 671 RGLK-LSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLST--IVNADLILVIS 746 (790)
T ss_pred cccc-cCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeehh--eecccEEEEEe
Confidence 8876 999999999999999999999999999999999999999999999986 8999999999987 45689999999
Q ss_pred CCEEEEecChhHHHH
Q 044602 309 EGYPVYYGKARESME 323 (674)
Q Consensus 309 ~G~iv~~G~~~~~~~ 323 (674)
+|+|++.|.|+|++.
T Consensus 747 ~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 747 NGRIVERGRHEELLK 761 (790)
T ss_pred CCeEeecCcHHHHHh
Confidence 999999999999864
No 86
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=7.6e-44 Score=362.24 Aligned_cols=219 Identities=45% Similarity=0.755 Sum_probs=185.4
Q ss_pred EEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC-
Q 044602 70 LKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD- 148 (674)
Q Consensus 70 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~- 148 (674)
+.|+||+++++.. +..+++|+|+|+++++||+++|+||||||||||+|+|+|.+++
T Consensus 4 ~~~~~~~~~~~~~-----------------------~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~ 60 (226)
T cd03234 4 LPWWDVGLKAKNW-----------------------NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGG 60 (226)
T ss_pred ceeecceeeeecC-----------------------ccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCC
Confidence 6799999988521 1136799999999999999999999999999999999998752
Q ss_pred -CCccEEEECCEeCCh-hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHH-HHHHcCCCcccccc
Q 044602 149 -DVKGNITYNDIPYNP-ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQM-ILKELGLERCRHTR 225 (674)
Q Consensus 149 -~~~G~I~~~g~~~~~-~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~-~l~~lgL~~~~~~~ 225 (674)
+.+|+|.++|+++.. ..++.++|++|++.+++.+||+||+.++.....+....+....+++++ .++.+++.+..++.
T Consensus 61 ~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 140 (226)
T cd03234 61 GTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNL 140 (226)
T ss_pred CCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhccc
Confidence 569999999998754 467789999999999999999999998765432222222233344555 89999988766665
Q ss_pred ccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEE
Q 044602 226 VGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLL 305 (674)
Q Consensus 226 vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 305 (674)
+ ++||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|+++|++..++.++||+++
T Consensus 141 ~-----~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~ 215 (226)
T cd03234 141 V-----KGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRIL 215 (226)
T ss_pred c-----cCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEE
Confidence 4 58999999999999999999999999999999999999999999999987799999999998556889999999
Q ss_pred EEeCCEEEEec
Q 044602 306 LISEGYPVYYG 316 (674)
Q Consensus 306 ~L~~G~iv~~G 316 (674)
+|++|++++.|
T Consensus 216 ~l~~G~i~~~g 226 (226)
T cd03234 216 LLSSGEIVYSG 226 (226)
T ss_pred EEeCCEEEecC
Confidence 99999999875
No 87
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=3.4e-44 Score=368.55 Aligned_cols=206 Identities=30% Similarity=0.472 Sum_probs=176.1
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-------hccccEEEEccCCCCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-------ALKRRIGFVTQDDVLLPQ 181 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-------~~~~~igyv~Q~~~l~~~ 181 (674)
+++|+|+|+++++||+++|+||||||||||+++|+|+. ++.+|+|.++|.++.. .+++.++|++|++.+++.
T Consensus 15 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (243)
T TIGR02315 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLV-EPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIER 93 (243)
T ss_pred cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-CCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccccc
Confidence 45999999999999999999999999999999999987 4569999999998642 246789999999999999
Q ss_pred CCHHHHHHHHHhhcC--C---CCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEE
Q 044602 182 LTVEETLVFAAFLRL--P---GNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLL 256 (674)
Q Consensus 182 lTV~e~l~~~~~~~~--~---~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~ill 256 (674)
+||+||+.++..... . ......+..++++++++.+||.+..++.+ .+||||||||++|||||+.+|++|+
T Consensus 94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lll 168 (243)
T TIGR02315 94 LTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRA-----DQLSGGQQQRVAIARALAQQPDLIL 168 (243)
T ss_pred ccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999987532100 0 00112334567889999999987777654 4899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHH
Q 044602 257 LDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 257 LDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
|||||+|||+.++..+.+.|++++++ |+|+|++||++. .+.++||++++|++|++++.|+++++
T Consensus 169 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 169 ADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEecCCHHHh
Confidence 99999999999999999999999764 899999999976 46789999999999999999998875
No 88
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-43 Score=362.52 Aligned_cols=216 Identities=27% Similarity=0.477 Sum_probs=183.3
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|+.. ...+++|+|+||++++||+++|+||||||||||+|+|+|++ +
T Consensus 5 ~l~~~~l~~~~~~~-----------------------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~ 60 (233)
T PRK11629 5 LLQCDNLCKRYQEG-----------------------SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLD-T 60 (233)
T ss_pred eEEEEeEEEEcCCC-----------------------CcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC-C
Confidence 48999999987421 01146999999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEeCCh-------hc-cccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc
Q 044602 149 DVKGNITYNDIPYNP-------AL-KRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER 220 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~-------~~-~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 220 (674)
+.+|+|.++|+++.. .. ++.++|++|++.+++.+||+||+.+..... ....++..++++++++.+||++
T Consensus 61 ~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~ 137 (233)
T PRK11629 61 PTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEH 137 (233)
T ss_pred CCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCch
Confidence 569999999998742 12 257999999999999999999999875432 1234445567899999999987
Q ss_pred cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecCCchHHHh
Q 044602 221 CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK-AGRTVITTIHQPSSRMFH 299 (674)
Q Consensus 221 ~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~ 299 (674)
..++.+ .+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++.. +..
T Consensus 138 ~~~~~~-----~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~-~~~ 211 (233)
T PRK11629 138 RANHRP-----SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL-AKR 211 (233)
T ss_pred hhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHh
Confidence 777654 48999999999999999999999999999999999999999999999976 58999999999864 444
Q ss_pred hcCEEEEEeCCEEEEecCh
Q 044602 300 MFDKLLLISEGYPVYYGKA 318 (674)
Q Consensus 300 ~~D~v~~L~~G~iv~~G~~ 318 (674)
+|++++|++|++++.|+.
T Consensus 212 -~~~~~~l~~G~i~~~~~~ 229 (233)
T PRK11629 212 -MSRQLEMRDGRLTAELSL 229 (233)
T ss_pred -hCEEEEEECCEEEEEecc
Confidence 689999999999988864
No 89
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-45 Score=398.13 Aligned_cols=217 Identities=31% Similarity=0.486 Sum_probs=188.3
Q ss_pred CCceeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHc
Q 044602 65 PLPIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 65 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G 144 (674)
..++.++.+|++|+|+. .+++++|+|+++++|+.+||+|+||||||||+++|+|
T Consensus 316 ~~~~ei~~~~l~~~y~~--------------------------g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G 369 (559)
T COG4988 316 EPPIEISLENLSFRYPD--------------------------GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLG 369 (559)
T ss_pred CCCceeeecceEEecCC--------------------------CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhC
Confidence 34667778899998863 2478999999999999999999999999999999999
Q ss_pred CCCCCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC--
Q 044602 145 RLTDDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL-- 218 (674)
Q Consensus 145 ~~~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-- 218 (674)
+.+ +++|+|.+||++..+ .++++++||+|+|.+|++ |++|||.++.. +.++ +.+.+++++.||
T Consensus 370 ~~~-~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~~-----~~s~----e~i~~al~~a~l~~ 438 (559)
T COG4988 370 FLA-PTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG-TIRENILLARP-----DASD----EEIIAALDQAGLLE 438 (559)
T ss_pred cCC-CCCceEEECCccccccCHHHHHhHeeeeCCCCccccc-cHHHHhhccCC-----cCCH----HHHHHHHHHhcHHH
Confidence 884 479999999998753 689999999999999999 99999998732 1233 344555555554
Q ss_pred ----CccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q 044602 219 ----ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPS 294 (674)
Q Consensus 219 ----~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 294 (674)
++..|+.+|+.+ ++|||||+|||++||||+.+++++++||||++||.++++.|++.|.++++ ++|+|++||++.
T Consensus 439 ~v~~p~GLdt~ige~G-~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~ 516 (559)
T COG4988 439 FVPKPDGLDTVIGEGG-AGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLE 516 (559)
T ss_pred hhcCCCcccchhccCC-CCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChH
Confidence 457789998655 57999999999999999999999999999999999999999999999987 699999999986
Q ss_pred hHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 295 SRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 295 ~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
. ..-+|+|++|++|++++.|+++++.
T Consensus 517 ~--~~~~D~I~vld~G~l~~~g~~~~L~ 542 (559)
T COG4988 517 D--AADADRIVVLDNGRLVEQGTHEELS 542 (559)
T ss_pred H--HhcCCEEEEecCCceeccCCHHHHh
Confidence 5 6679999999999999999999984
No 90
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=7.3e-45 Score=426.72 Aligned_cols=266 Identities=26% Similarity=0.438 Sum_probs=206.8
Q ss_pred CCcccceeeecCCCCcchhHHHHHHHHh--------hccc----------c-ccccccCCCccc-cC--C--CCceeEEE
Q 044602 17 PSTMGSMQIAAGSNGFGHSIEFMSQAYL--------RNRY----------S-EIDIVDESSSIE-KD--R--PLPIFLKF 72 (674)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~----------~-~~~~~~~~~~~~-~~--~--~~~~~l~~ 72 (674)
++.+|++.+.+|.++.|.++.+..+... .+.. . ..++.+.+++.. .. . .....++|
T Consensus 402 il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~I~~ 481 (711)
T TIGR00958 402 VLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTLAPLNLEGLIEF 481 (711)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCeEEE
Confidence 4567888899999999999887665321 0000 0 012222221111 00 1 12235999
Q ss_pred EeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCcc
Q 044602 73 EDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKG 152 (674)
Q Consensus 73 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G 152 (674)
+||+|+|+.. .++++|+|+|++++|||.+||+||||||||||+|+|+|.+ ++.+|
T Consensus 482 ~nVsf~Y~~~------------------------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~-~p~~G 536 (711)
T TIGR00958 482 QDVSFSYPNR------------------------PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLY-QPTGG 536 (711)
T ss_pred EEEEEECCCC------------------------CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhcc-CCCCC
Confidence 9999998621 1256999999999999999999999999999999999977 55699
Q ss_pred EEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-------CCcc
Q 044602 153 NITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG-------LERC 221 (674)
Q Consensus 153 ~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~ 221 (674)
+|.+||+++++ .++++++||+|++.+|++ |++|||.++.. ..++ +++.++++..+ +++.
T Consensus 537 ~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~g-TIreNI~~g~~-----~~~~----e~i~~al~~a~l~~~i~~lp~G 606 (711)
T TIGR00958 537 QVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSG-SVRENIAYGLT-----DTPD----EEIMAAAKAANAHDFIMEFPNG 606 (711)
T ss_pred EEEECCEEHHhcCHHHHHhhceEEecCcccccc-CHHHHHhcCCC-----CCCH----HHHHHHHHHcCCHHHHHhCCCc
Confidence 99999999863 578899999999999997 99999998732 1222 23444455444 3567
Q ss_pred ccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhc
Q 044602 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMF 301 (674)
Q Consensus 222 ~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~ 301 (674)
.||.+|+.+ ..||||||||++|||||+++|+||+||||||+||++++..+.+ .. ..+++|+|++||+++. .+.+
T Consensus 607 ldT~ige~G-~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~~--i~~a 680 (711)
T TIGR00958 607 YDTEVGEKG-SQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLST--VERA 680 (711)
T ss_pred cCCcccCCC-CcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHHH--HHhC
Confidence 899998764 5799999999999999999999999999999999999999998 22 2358999999999864 6779
Q ss_pred CEEEEEeCCEEEEecChhHHHH
Q 044602 302 DKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 302 D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
|+|++|++|++++.|+++|+++
T Consensus 681 D~IivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 681 DQILVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred CEEEEEECCEEEEeeCHHHHHh
Confidence 9999999999999999999864
No 91
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=4.6e-44 Score=361.61 Aligned_cols=193 Identities=33% Similarity=0.567 Sum_probs=168.5
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-------h-ccccEEEEccCCCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-------A-LKRRIGFVTQDDVLLP 180 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-------~-~~~~igyv~Q~~~l~~ 180 (674)
+.+|+|+||++++||+++|+||||||||||+++|+|.+ ++.+|+|.++|+++.. . .++.++|++|++.+++
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLD-RPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLP 95 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCc-CCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCC
Confidence 46999999999999999999999999999999999987 4569999999998742 1 2467999999999999
Q ss_pred CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 044602 181 QLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEP 260 (674)
Q Consensus 181 ~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEP 260 (674)
.+||+||+.++...+ .....+..++++++++.+||.+..++.+ +.||||||||++|||||+.+|++||||||
T Consensus 96 ~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~lllLDEP 167 (218)
T cd03255 96 DLTALENVELPLLLA---GVPKKERRERAEELLERVGLGDRLNHYP-----SELSGGQQQRVAIARALANDPKIILADEP 167 (218)
T ss_pred CCcHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhcCh-----hhcCHHHHHHHHHHHHHccCCCEEEEcCC
Confidence 999999999876433 1233344567889999999987777654 48999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecCCchHHHhhcCEEEEEeCCEE
Q 044602 261 TSGLDSTSANKLIQVLQKVAK-AGRTVITTIHQPSSRMFHMFDKLLLISEGYP 312 (674)
Q Consensus 261 TsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 312 (674)
|+|||+.++..+.+.|+++++ +|+|||++||++.. +. .||++++|++|++
T Consensus 168 ~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~~-~~d~v~~l~~G~i 218 (218)
T cd03255 168 TGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL-AE-YADRIIELRDGKI 218 (218)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH-Hh-hhcEEEEeeCCcC
Confidence 999999999999999999987 58999999999864 54 8999999999974
No 92
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-43 Score=371.70 Aligned_cols=221 Identities=29% Similarity=0.490 Sum_probs=189.2
Q ss_pred ceeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 67 PIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 67 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+..++++||+++|+. .+.+|+|+||++++||+++|+||||||||||+++|+|.+
T Consensus 3 ~~~l~~~~l~~~~~~--------------------------~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~ 56 (283)
T PRK13636 3 DYILKVEELNYNYSD--------------------------GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGIL 56 (283)
T ss_pred CceEEEEeEEEEeCC--------------------------CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 346899999998741 245999999999999999999999999999999999987
Q ss_pred CCCCccEEEECCEeCC------hhccccEEEEccCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 044602 147 TDDVKGNITYNDIPYN------PALKRRIGFVTQDDV-LLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE 219 (674)
Q Consensus 147 ~~~~~G~I~~~g~~~~------~~~~~~igyv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 219 (674)
++.+|+|.++|.++. ..+++.+||++|++. .+...||+||+.++.... ..+..+..++++++++.+||.
T Consensus 57 -~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~ 132 (283)
T PRK13636 57 -KPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIE 132 (283)
T ss_pred -CCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCCh
Confidence 456999999999873 135678999999973 233469999999865322 234555567789999999998
Q ss_pred ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHH
Q 044602 220 RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMF 298 (674)
Q Consensus 220 ~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~ 298 (674)
+..++.+ +.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++. +.
T Consensus 133 ~~~~~~~-----~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~-~~ 206 (283)
T PRK13636 133 HLKDKPT-----HCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDI-VP 206 (283)
T ss_pred hhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HH
Confidence 8777664 589999999999999999999999999999999999999999999999875 8999999999764 67
Q ss_pred hhcCEEEEEeCCEEEEecChhHHHH
Q 044602 299 HMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 299 ~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
++||++++|++|++++.|+++++.+
T Consensus 207 ~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 207 LYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HhCCEEEEEECCEEEEeCCHHHHhc
Confidence 7899999999999999999988753
No 93
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=5.4e-44 Score=358.64 Aligned_cols=194 Identities=33% Similarity=0.547 Sum_probs=171.4
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEE 186 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e 186 (674)
+++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.. ..++.++|++|++.+++.+||+|
T Consensus 13 ~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 91 (208)
T cd03268 13 KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK-PDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARE 91 (208)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-CCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHH
Confidence 469999999999999999999999999999999999874 569999999988753 34668999999999999999999
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 044602 187 TLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDS 266 (674)
Q Consensus 187 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~ 266 (674)
|+.+..... .. ..++++++++.++|.+..++.+ .+|||||||||+|||+|+.+|++|+|||||+|||+
T Consensus 92 ~l~~~~~~~---~~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~ 159 (208)
T cd03268 92 NLRLLARLL---GI----RKKRIDEVLDVVGLKDSAKKKV-----KGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDP 159 (208)
T ss_pred HHHHHHHhc---CC----cHHHHHHHHHHcCCHHHHhhhH-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCH
Confidence 998875432 11 1346788999999988777665 48999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEec
Q 044602 267 TSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYG 316 (674)
Q Consensus 267 ~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 316 (674)
.++..+.+.|++++++|+|+|++||++. .+.+++|++++|++|++++.|
T Consensus 160 ~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 160 DGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecC
Confidence 9999999999999877999999999975 467889999999999998765
No 94
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=1.4e-43 Score=379.24 Aligned_cols=233 Identities=24% Similarity=0.402 Sum_probs=192.8
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++||+++|....... + .....+...+|+||||+|++||+++|+|+||||||||+++|+|+++
T Consensus 7 ~~l~v~~l~~~~~~~~~~~-----------~---~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~ 72 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQ-----------W---FWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK 72 (331)
T ss_pred ceEEEeCeEEEECCCCccc-----------c---ccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC
Confidence 4599999999885321100 0 0000122569999999999999999999999999999999999884
Q ss_pred CCCccEEEECCEeCCh-------hccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC
Q 044602 148 DDVKGNITYNDIPYNP-------ALKRRIGFVTQDD--VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL 218 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~-------~~~~~igyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 218 (674)
+.+|+|.++|+++.. .+++.++||+|++ .++|.+||.||+.+...... ...++++..++++++++.+||
T Consensus 73 -p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~-~~~~~~~~~~~~~~~l~~vgl 150 (331)
T PRK15079 73 -ATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYH-PKLSRQEVKDRVKAMMLKVGL 150 (331)
T ss_pred -CCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHcCC
Confidence 569999999998742 2467899999997 58889999999998754321 123556667788999999999
Q ss_pred C-ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchH
Q 044602 219 E-RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSR 296 (674)
Q Consensus 219 ~-~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~ 296 (674)
. +..++ ++++|||||||||+|||||+.+|++||+||||+|||..++.++++.|+++.++ |.|+|++|||+. .
T Consensus 151 ~~~~~~~-----~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~ 224 (331)
T PRK15079 151 LPNLINR-----YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-V 224 (331)
T ss_pred ChHHhcC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-H
Confidence 5 34454 45699999999999999999999999999999999999999999999999875 999999999975 4
Q ss_pred HHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 297 MFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 297 i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+.++||+|++|++|++++.|+++++.
T Consensus 225 ~~~~~dri~vl~~G~ive~g~~~~i~ 250 (331)
T PRK15079 225 VKHISDRVLVMYLGHAVELGTYDEVY 250 (331)
T ss_pred HHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 77899999999999999999998874
No 95
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=7.6e-44 Score=359.00 Aligned_cols=193 Identities=36% Similarity=0.545 Sum_probs=169.6
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-------hccccEEEEccCCCCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-------ALKRRIGFVTQDDVLLPQ 181 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-------~~~~~igyv~Q~~~l~~~ 181 (674)
+.+|+|+||++++||+++|+||||||||||+++|+|.++ +.+|+|.++|+++.. .+++.++|++|++.+++.
T Consensus 15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 93 (214)
T TIGR02673 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT-PSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPD 93 (214)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccC
Confidence 459999999999999999999999999999999999874 569999999998742 245689999999999999
Q ss_pred CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 044602 182 LTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPT 261 (674)
Q Consensus 182 lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPT 261 (674)
+||.||+.++.... .....+..++++++++.++|.+..++.+ .+||||||||++|||||+.+|++|+|||||
T Consensus 94 ~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~lllLDEPt 165 (214)
T TIGR02673 94 RTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHKADAFP-----EQLSGGEQQRVAIARAIVNSPPLLLADEPT 165 (214)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhCCCCEEEEeCCc
Confidence 99999999875432 1233445567899999999987766654 489999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCE
Q 044602 262 SGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGY 311 (674)
Q Consensus 262 sgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 311 (674)
+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|+
T Consensus 166 ~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 166 GNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDDGR 214 (214)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecCCC
Confidence 999999999999999999877999999999975 5778899999999985
No 96
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-43 Score=373.09 Aligned_cols=221 Identities=25% Similarity=0.445 Sum_probs=188.0
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|+... ...+.+|+|||++|++||+++|+||||||||||+|+|+|.. +
T Consensus 2 ~l~~~~l~~~y~~~~----------------------~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~-~ 58 (286)
T PRK13646 2 TIRFDNVSYTYQKGT----------------------PYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALL-K 58 (286)
T ss_pred EEEEEEEEEEECCCC----------------------ccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C
Confidence 378999999885210 01246999999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEeCCh--------hccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC
Q 044602 149 DVKGNITYNDIPYNP--------ALKRRIGFVTQDD--VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL 218 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~--------~~~~~igyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 218 (674)
+.+|+|.++|+++.. .+++.+|||+|++ .+++. ||.||+.|+.... ..+.++..++++++++.+||
T Consensus 59 p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~-tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL 134 (286)
T PRK13646 59 PTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFED-TVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGF 134 (286)
T ss_pred CCCcEEEECCEECccccccchHHHHHhheEEEecChHhccchh-hHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCC
Confidence 569999999998732 3567899999986 46664 9999999875432 23455566788999999999
Q ss_pred C-ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecCCchH
Q 044602 219 E-RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK-AGRTVITTIHQPSSR 296 (674)
Q Consensus 219 ~-~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~ 296 (674)
. +..++. ++.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||++. +
T Consensus 135 ~~~~~~~~-----~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~ 208 (286)
T PRK13646 135 SRDVMSQS-----PFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-E 208 (286)
T ss_pred ChhhhhCC-----cccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-H
Confidence 6 556654 458999999999999999999999999999999999999999999999976 4899999999975 4
Q ss_pred HHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 297 MFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 297 i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+.++||++++|++|++++.|+++++.
T Consensus 209 ~~~~~dri~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 209 VARYADEVIVMKEGSIVSQTSPKELF 234 (286)
T ss_pred HHHhCCEEEEEECCEEEEECCHHHHH
Confidence 77899999999999999999998864
No 97
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=2e-43 Score=361.56 Aligned_cols=203 Identities=30% Similarity=0.495 Sum_probs=176.9
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh---hccccEEEEccCCCCCCCCCHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP---ALKRRIGFVTQDDVLLPQLTVE 185 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~---~~~~~igyv~Q~~~l~~~lTV~ 185 (674)
+.+|+|+|+++++||+++|+||||||||||+++|+|+. ++.+|+|.++|.++.. ..++.++|++|++.+++.+||+
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~ 92 (236)
T TIGR03864 14 RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLY-VAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVR 92 (236)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-CCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHH
Confidence 45999999999999999999999999999999999987 4569999999998742 2345799999999888889999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 044602 186 ETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD 265 (674)
Q Consensus 186 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD 265 (674)
||+.+....+ .....+..+.++++++.+||.+..++.++ +||||||||++|||||+.+|++++|||||+|||
T Consensus 93 ~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrl~laral~~~p~llllDEP~~~LD 164 (236)
T TIGR03864 93 QNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKVR-----ELNGGHRRRVEIARALLHRPALLLLDEPTVGLD 164 (236)
T ss_pred HHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCC
Confidence 9998865432 12344455678899999999887777654 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh-CCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 266 STSANKLIQVLQKVAK-AGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 266 ~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+.++..+.+.|+++++ +|+|+|++||++.. +. .||++++|++|++++.|+++++.
T Consensus 165 ~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~~-~~d~i~~l~~G~i~~~~~~~~~~ 220 (236)
T TIGR03864 165 PASRAAIVAHVRALCRDQGLSVLWATHLVDE-IE-ADDRLVVLHRGRVLADGAAAELR 220 (236)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEecChhh-Hh-hCCEEEEEeCCeEEEeCCHHHHH
Confidence 9999999999999985 58999999999864 44 59999999999999999988764
No 98
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=1.2e-44 Score=425.54 Aligned_cols=264 Identities=24% Similarity=0.345 Sum_probs=208.8
Q ss_pred CCcccceeeecCCCCcchhHHHHHHHHh---------------------hccccccccccCCCccc-c-----CCCCcee
Q 044602 17 PSTMGSMQIAAGSNGFGHSIEFMSQAYL---------------------RNRYSEIDIVDESSSIE-K-----DRPLPIF 69 (674)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~-~-----~~~~~~~ 69 (674)
.+.+|++++.+|.++.|.++++...... .++.. ++.+.+++.. . .......
T Consensus 396 il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~--~~l~~~~e~~~~~~~~~~~~~~~~ 473 (708)
T TIGR01193 396 ILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLN--EVYLVDSEFINKKKRTELNNLNGD 473 (708)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHcCCCcccccccccCCCCCCCc
Confidence 4567899999999999999888765431 00100 2222111110 0 0112236
Q ss_pred EEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 044602 70 LKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD 149 (674)
Q Consensus 70 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~ 149 (674)
++++||+|+|+. .+++|+|+|+++++||.+||+||||||||||+|+|+|++ ++
T Consensus 474 I~~~~vsf~y~~--------------------------~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~-~p 526 (708)
T TIGR01193 474 IVINDVSYSYGY--------------------------GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFF-QA 526 (708)
T ss_pred EEEEEEEEEcCC--------------------------CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccC-CC
Confidence 999999998841 246999999999999999999999999999999999977 45
Q ss_pred CccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-------C
Q 044602 150 VKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG-------L 218 (674)
Q Consensus 150 ~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L 218 (674)
.+|+|++||+++++ .+|+++|||+|++.+|++ |++|||.++.. + +.+++ ++.++++..+ +
T Consensus 527 ~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~---~-~~~~~----~i~~a~~~a~l~~~i~~l 597 (708)
T TIGR01193 527 RSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGAK---E-NVSQD----EIWAACEIAEIKDDIENM 597 (708)
T ss_pred CCcEEEECCEEHHHcCHHHHHHheEEEecCceehhH-HHHHHHhccCC---C-CCCHH----HHHHHHHHhCCHHHHHhc
Confidence 69999999998753 688999999999999998 99999998631 1 12222 2333333332 4
Q ss_pred CccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHH
Q 044602 219 ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMF 298 (674)
Q Consensus 219 ~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~ 298 (674)
++..||.+|+.+ .+||||||||++|||||+++|+||+||||||+||+.++..+.+.|+++ +|+|+|+++|+++. .
T Consensus 598 p~gldt~i~e~G-~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~~--~ 672 (708)
T TIGR01193 598 PLGYQTELSEEG-SSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLSV--A 672 (708)
T ss_pred ccccCcEecCCC-CCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchHH--H
Confidence 677899998755 579999999999999999999999999999999999999999999985 48999999999864 6
Q ss_pred hhcCEEEEEeCCEEEEecChhHHHH
Q 044602 299 HMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 299 ~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
+.||+|++|++|++++.|+++|+++
T Consensus 673 ~~~D~i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 673 KQSDKIIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred HcCCEEEEEECCEEEEECCHHHHHh
Confidence 7899999999999999999999864
No 99
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=9e-44 Score=358.32 Aligned_cols=194 Identities=33% Similarity=0.489 Sum_probs=170.4
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-------hccccEEEEccCCCCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-------ALKRRIGFVTQDDVLLPQ 181 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-------~~~~~igyv~Q~~~l~~~ 181 (674)
+.+|+|+|+++++||+++|+||||||||||+++|+|.+ ++.+|+|.++|+++.. ..++.++|++|++.+++.
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEE-LPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPD 92 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccC
Confidence 46999999999999999999999999999999999987 4569999999998642 246689999999999999
Q ss_pred CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 044602 182 LTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPT 261 (674)
Q Consensus 182 lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPT 261 (674)
+||+||+.+....+ ....++..++++++++.+||++..++.+ .+||||||||++|||||+.+|++++|||||
T Consensus 93 ~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt 164 (214)
T cd03292 93 RNVYENVAFALEVT---GVPPREIRKRVPAALELVGLSHKHRALP-----AELSGGEQQRVAIARAIVNSPTILIADEPT 164 (214)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhcCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 99999999875432 1234445567889999999988777654 489999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEE
Q 044602 262 SGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYP 312 (674)
Q Consensus 262 sgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 312 (674)
+|||+.++..+.+.|++++++|+|+|++||++. .+.++||++++|++|++
T Consensus 165 ~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 165 GNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALERGKL 214 (214)
T ss_pred CcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 999999999999999999777999999999975 46778999999999974
No 100
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=5.1e-41 Score=416.72 Aligned_cols=223 Identities=25% Similarity=0.392 Sum_probs=196.7
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++||++.|+. +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+
T Consensus 927 ~~L~I~nLsK~y~~-------------------------~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~ 981 (2272)
T TIGR01257 927 PGVCVKNLVKIFEP-------------------------SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP 981 (2272)
T ss_pred ceEEEEeEEEEecC-------------------------CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC
Confidence 46788888887731 23569999999999999999999999999999999999884
Q ss_pred CCCccEEEECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccc
Q 044602 148 DDVKGNITYNDIPYNP---ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHT 224 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~---~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 224 (674)
+++|+|.++|+++.. ..|+.+||++|++.+++.+||+||+.|.++.+ ....++.+++++++++.+||++..++
T Consensus 982 -PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lk---g~~~~~~~~~v~~lL~~vgL~~~~~~ 1057 (2272)
T TIGR01257 982 -PTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLK---GRSWEEAQLEMEAMLEDTGLHHKRNE 1057 (2272)
T ss_pred -CCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcC
Confidence 569999999998853 45778999999999999999999999987654 23344556788999999999988887
Q ss_pred cccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEE
Q 044602 225 RVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKL 304 (674)
Q Consensus 225 ~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v 304 (674)
.++ +|||||||||+||+||+.+|++|+|||||+|||+.+++.+++.|++++ +|+|||++||++. ++..+||||
T Consensus 1058 ~~~-----~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI 1130 (2272)
T TIGR01257 1058 EAQ-----DLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRI 1130 (2272)
T ss_pred Chh-----hCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEE
Confidence 654 899999999999999999999999999999999999999999999995 5999999999975 578899999
Q ss_pred EEEeCCEEEEecChhHHHHHHH
Q 044602 305 LLISEGYPVYYGKARESMEYFS 326 (674)
Q Consensus 305 ~~L~~G~iv~~G~~~~~~~~f~ 326 (674)
++|++|+++..|+++++.+.|.
T Consensus 1131 ~iL~~GkL~~~Gs~~~Lk~~~g 1152 (2272)
T TIGR01257 1131 AIISQGRLYCSGTPLFLKNCFG 1152 (2272)
T ss_pred EEEECCEEEEecCHHHHHHhcC
Confidence 9999999999999999987663
No 101
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=2e-43 Score=363.96 Aligned_cols=215 Identities=28% Similarity=0.463 Sum_probs=184.8
Q ss_pred EEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 044602 70 LKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD 149 (674)
Q Consensus 70 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~ 149 (674)
++++||+++|+ .+.+|+|+||++++||+++|+||||||||||+|+|+|..++
T Consensus 2 l~~~~l~~~~~---------------------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p- 53 (247)
T TIGR00972 2 IEIENLNLFYG---------------------------EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDL- 53 (247)
T ss_pred EEEEEEEEEEC---------------------------CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-
Confidence 67899998763 13589999999999999999999999999999999998743
Q ss_pred C-----ccEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC
Q 044602 150 V-----KGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL 218 (674)
Q Consensus 150 ~-----~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 218 (674)
. +|+|.++|+++.. ..++.++|++|++.+++ +||.||+.+....+ ......+..++++++++.+||
T Consensus 54 ~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~l 130 (247)
T TIGR00972 54 VPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLH--GIKDKKELDEIVEESLKKAAL 130 (247)
T ss_pred CcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCC
Confidence 4 8999999998742 34678999999999998 89999999875432 112344555678999999999
Q ss_pred C----ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q 044602 219 E----RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPS 294 (674)
Q Consensus 219 ~----~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 294 (674)
. +..++. +++||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++||++.
T Consensus 131 ~~~~~~~~~~~-----~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~ 204 (247)
T TIGR00972 131 WDEVKDRLHDS-----ALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ 204 (247)
T ss_pred CcchhhHhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH
Confidence 7 555554 458999999999999999999999999999999999999999999999977 599999999976
Q ss_pred hHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 295 SRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 295 ~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
++.++||++++|++|++++.|+++++.
T Consensus 205 -~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 205 -QAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred -HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 477899999999999999999988763
No 102
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-43 Score=363.87 Aligned_cols=218 Identities=25% Similarity=0.482 Sum_probs=188.3
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++++|+ .+.+|+|+||++++||+++|+||||||||||+++|+|.. +
T Consensus 3 ~l~~~~l~~~~~---------------------------~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~ 54 (241)
T PRK10895 3 TLTAKNLAKAYK---------------------------GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIV-P 54 (241)
T ss_pred eEEEeCcEEEeC---------------------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-C
Confidence 478899988763 245999999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEeCCh-----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 044602 149 DVKGNITYNDIPYNP-----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRH 223 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 223 (674)
+.+|+|.++|.++.. ..++.++|++|++.+++.+||.||+.+..... .....++...+++++++.+|+.+..+
T Consensus 55 ~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~ 132 (241)
T PRK10895 55 RDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIR--DDLSAEQREDRANELMEEFHIEHLRD 132 (241)
T ss_pred CCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhcc--cccCHHHHHHHHHHHHHHcCCHHHhh
Confidence 569999999998742 24568999999999999899999998764322 11233445567889999999987666
Q ss_pred ccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCE
Q 044602 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDK 303 (674)
Q Consensus 224 ~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 303 (674)
+.+ ++||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||++. ++.+.||+
T Consensus 133 ~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~ 206 (241)
T PRK10895 133 SMG-----QSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCER 206 (241)
T ss_pred cch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCE
Confidence 654 489999999999999999999999999999999999999999999999877999999999975 57889999
Q ss_pred EEEEeCCEEEEecChhHHH
Q 044602 304 LLLISEGYPVYYGKARESM 322 (674)
Q Consensus 304 v~~L~~G~iv~~G~~~~~~ 322 (674)
+++|++|++++.|+++++.
T Consensus 207 v~~l~~G~i~~~~~~~~~~ 225 (241)
T PRK10895 207 AYIVSQGHLIAHGTPTEIL 225 (241)
T ss_pred EEEEeCCeEEeeCCHHHHh
Confidence 9999999999999988764
No 103
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-43 Score=363.04 Aligned_cols=215 Identities=25% Similarity=0.456 Sum_probs=184.2
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++++|+ .+.+|+|+||++++||+++|+||||||||||+++|+|.. +
T Consensus 5 ~l~~~~l~~~~~---------------------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~ 56 (237)
T PRK11614 5 MLSFDKVSAHYG---------------------------KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDP-R 56 (237)
T ss_pred EEEEEeEEEeeC---------------------------CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCC-C
Confidence 589999998763 245999999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEeCCh-----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHc-CCCccc
Q 044602 149 DVKGNITYNDIPYNP-----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKEL-GLERCR 222 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~ 222 (674)
+.+|+|.++|+++.. ..++.++|++|++.+++.+||.||+.++.... ...+..+.++++++.+ ++.+..
T Consensus 57 p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~ 131 (237)
T PRK11614 57 ATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERR 131 (237)
T ss_pred CCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHH
Confidence 569999999998742 24568999999999999899999998864221 1222344567778877 476555
Q ss_pred cccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcC
Q 044602 223 HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFD 302 (674)
Q Consensus 223 ~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 302 (674)
++.+ +.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||
T Consensus 132 ~~~~-----~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d 205 (237)
T PRK11614 132 IQRA-----GTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLAD 205 (237)
T ss_pred hCch-----hhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCC
Confidence 5543 589999999999999999999999999999999999999999999999877999999999975 5789999
Q ss_pred EEEEEeCCEEEEecChhHHH
Q 044602 303 KLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 303 ~v~~L~~G~iv~~G~~~~~~ 322 (674)
++++|++|++++.|+++++.
T Consensus 206 ~i~~l~~G~i~~~~~~~~~~ 225 (237)
T PRK11614 206 RGYVLENGHVVLEDTGDALL 225 (237)
T ss_pred EEEEEeCCEEEeeCCHHHHh
Confidence 99999999999999998774
No 104
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=2.7e-43 Score=365.14 Aligned_cols=218 Identities=26% Similarity=0.422 Sum_probs=187.5
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||++.|+ .+.+|+|+||++++||+++|+||||||||||+++|+|..+
T Consensus 5 ~l~~~~l~~~~~---------------------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~- 56 (257)
T PRK10619 5 KLNVIDLHKRYG---------------------------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK- 56 (257)
T ss_pred cEEEeeeEEEEC---------------------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-
Confidence 388999998774 2459999999999999999999999999999999999874
Q ss_pred CCccEEEECCEeCCh-----------------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 044602 149 DVKGNITYNDIPYNP-----------------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQM 211 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~-----------------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~ 211 (674)
+.+|+|.++|.++.. .+++.++|++|++.+++.+||+||+.++..... ...+.+..+++.+
T Consensus 57 ~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~ 134 (257)
T PRK10619 57 PSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVK 134 (257)
T ss_pred CCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 569999999987631 346689999999999999999999987542111 1234455677889
Q ss_pred HHHHcCCCccc-cccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEe
Q 044602 212 ILKELGLERCR-HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTI 290 (674)
Q Consensus 212 ~l~~lgL~~~~-~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~ 290 (674)
+++.+|+.+.. ++. +.+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++|
T Consensus 135 ~l~~~gl~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivs 209 (257)
T PRK10619 135 YLAKVGIDERAQGKY-----PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVT 209 (257)
T ss_pred HHHHcCCChhhhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 99999997653 444 358999999999999999999999999999999999999999999999987799999999
Q ss_pred cCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 291 HQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 291 H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
|++. ++..+|||+++|++|++++.|+++++.
T Consensus 210 H~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 210 HEMG-FARHVSSHVIFLHQGKIEEEGAPEQLF 240 (257)
T ss_pred CCHH-HHHHhcCEEEEEECCEEEEeCCHHHhh
Confidence 9975 477789999999999999999988763
No 105
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-43 Score=368.81 Aligned_cols=218 Identities=25% Similarity=0.439 Sum_probs=188.7
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|+. ..+.+|+|+|+++++||+++|+||||||||||+++|+|.++
T Consensus 5 ~l~~~~l~~~~~~-------------------------~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~- 58 (279)
T PRK13635 5 IIRVEHISFRYPD-------------------------AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL- 58 (279)
T ss_pred eEEEEEEEEEeCC-------------------------CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-
Confidence 4899999998741 12459999999999999999999999999999999999884
Q ss_pred CCccEEEECCEeCCh----hccccEEEEccCC-CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 044602 149 DVKGNITYNDIPYNP----ALKRRIGFVTQDD-VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRH 223 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~----~~~~~igyv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 223 (674)
+.+|+|.++|+++.. ..++.+||++|++ .+++..||.||+.++.... ....++..++++++++.+||.+..+
T Consensus 59 p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~ 135 (279)
T PRK13635 59 PEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLN 135 (279)
T ss_pred CCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhh
Confidence 569999999998753 3567899999997 3666679999999875432 2344555677899999999988777
Q ss_pred ccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcC
Q 044602 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFD 302 (674)
Q Consensus 224 ~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D 302 (674)
+.+ ..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++.. +. .||
T Consensus 136 ~~~-----~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~-~~-~~d 208 (279)
T PRK13635 136 REP-----HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDE-AA-QAD 208 (279)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH-HH-cCC
Confidence 765 489999999999999999999999999999999999999999999999876 8999999999864 44 599
Q ss_pred EEEEEeCCEEEEecChhHHH
Q 044602 303 KLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 303 ~v~~L~~G~iv~~G~~~~~~ 322 (674)
++++|++|++++.|+++++.
T Consensus 209 ~i~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13635 209 RVIVMNKGEILEEGTPEEIF 228 (279)
T ss_pred EEEEEECCEEEEECCHHHHh
Confidence 99999999999999998875
No 106
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4.1e-45 Score=349.67 Aligned_cols=209 Identities=24% Similarity=0.493 Sum_probs=187.5
Q ss_pred ccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-----hccccEEEEccCCCCCCC
Q 044602 107 DYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-----ALKRRIGFVTQDDVLLPQ 181 (674)
Q Consensus 107 ~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~~l~~~ 181 (674)
+.+++++|||+++++||+++++|||||||||.+.++.|+.. +++|+|.+||.+++. ..|..+||+||++..|..
T Consensus 15 ~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~-~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~ 93 (243)
T COG1137 15 KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR-PDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRK 93 (243)
T ss_pred CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe-cCCceEEECCcccccCChHHHhhcCcccccccchHhhc
Confidence 34679999999999999999999999999999999999885 469999999999863 456689999999999999
Q ss_pred CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 044602 182 LTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPT 261 (674)
Q Consensus 182 lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPT 261 (674)
|||+|||......+.. ...+.+.+.+++++|++++|.|.++++- .+||||||+|+.|||||+.+|+.++||||+
T Consensus 94 LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a-----~sLSGGERRR~EIARaLa~~P~fiLLDEPF 167 (243)
T COG1137 94 LTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKA-----YSLSGGERRRVEIARALAANPKFILLDEPF 167 (243)
T ss_pred CcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCcc-----cccccchHHHHHHHHHHhcCCCEEEecCCc
Confidence 9999999987765532 2233455667889999999999998864 389999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHHH
Q 044602 262 SGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 262 sgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
+|.||.+..+|.++++.|+++|..|++|-|+.. +...+|||.+++++|++..+|+++|+.+
T Consensus 168 AGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~G~vla~G~p~ei~~ 228 (243)
T COG1137 168 AGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIISDGKVLAEGSPEEIVN 228 (243)
T ss_pred cCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEecCeEEecCCHHHHhc
Confidence 999999999999999999999999999999987 5789999999999999999999999853
No 107
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-43 Score=371.12 Aligned_cols=221 Identities=27% Similarity=0.406 Sum_probs=187.4
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|.... ...+.+|+|+|+++++||+++|+||||||||||+|+|+|.++
T Consensus 2 ~i~~~~l~~~~~~~~----------------------~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~- 58 (287)
T PRK13641 2 SIKFENVDYIYSPGT----------------------PMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK- 58 (287)
T ss_pred EEEEEEEEEEcCCCC----------------------CccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-
Confidence 478999999874210 012469999999999999999999999999999999999874
Q ss_pred CCccEEEECCEeCCh--------hccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC
Q 044602 149 DVKGNITYNDIPYNP--------ALKRRIGFVTQDD--VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL 218 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~--------~~~~~igyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 218 (674)
+.+|+|.++|+++.. ..++.+||++|++ .++ .+||.||+.++.... ....++..++++++++.+||
T Consensus 59 p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL 134 (287)
T PRK13641 59 PSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGL 134 (287)
T ss_pred CCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCC
Confidence 569999999998631 3456899999996 355 479999999875432 23445556678999999999
Q ss_pred C-ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHH
Q 044602 219 E-RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRM 297 (674)
Q Consensus 219 ~-~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i 297 (674)
. +..++.+ ++||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+
T Consensus 135 ~~~~~~~~~-----~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~ 208 (287)
T PRK13641 135 SEDLISKSP-----FELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DV 208 (287)
T ss_pred ChhHhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH
Confidence 7 5666655 489999999999999999999999999999999999999999999999877999999999975 47
Q ss_pred HhhcCEEEEEeCCEEEEecChhHHH
Q 044602 298 FHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 298 ~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.++||++++|++|++++.|+++++.
T Consensus 209 ~~~~d~v~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 209 AEYADDVLVLEHGKLIKHASPKEIF 233 (287)
T ss_pred HHhCCEEEEEECCEEEEeCCHHHHh
Confidence 8899999999999999999998764
No 108
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-43 Score=361.50 Aligned_cols=216 Identities=26% Similarity=0.427 Sum_probs=186.0
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|+++.|+ .+.+|+|+|+++++||+++|+||||||||||+|+|+|.. +
T Consensus 2 ~l~~~~l~~~~~---------------------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~ 53 (242)
T PRK11124 2 SIQLNGINCFYG---------------------------AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLE-M 53 (242)
T ss_pred EEEEEeeEEEEC---------------------------CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCC-C
Confidence 478999998773 245999999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEeCC----------hhccccEEEEccCCCCCCCCCHHHHHHHHH-hhcCCCCCCHHHHHHHHHHHHHHcC
Q 044602 149 DVKGNITYNDIPYN----------PALKRRIGFVTQDDVLLPQLTVEETLVFAA-FLRLPGNMNRQQKYARVQMILKELG 217 (674)
Q Consensus 149 ~~~G~I~~~g~~~~----------~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~lg 217 (674)
+.+|+|.++|.++. ...++.++|++|++.+++.+||.||+.+.. ... .....+..++++++++.+|
T Consensus 54 ~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~g 130 (242)
T PRK11124 54 PRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLR 130 (242)
T ss_pred CCceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcC
Confidence 56999999999762 134668999999999999999999997532 221 1233444567899999999
Q ss_pred CCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHH
Q 044602 218 LERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRM 297 (674)
Q Consensus 218 L~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i 297 (674)
|++..++.+ ++||||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|+|++||++. ++
T Consensus 131 l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~ 204 (242)
T PRK11124 131 LKPYADRFP-----LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VA 204 (242)
T ss_pred ChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HH
Confidence 987777654 489999999999999999999999999999999999999999999999877999999999976 46
Q ss_pred HhhcCEEEEEeCCEEEEecChhHH
Q 044602 298 FHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 298 ~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
.++||++++|++|++++.|++++.
T Consensus 205 ~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 205 RKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HHhcCEEEEEECCEEEEeCCHHHh
Confidence 788999999999999999988764
No 109
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=5.6e-44 Score=412.10 Aligned_cols=213 Identities=24% Similarity=0.377 Sum_probs=185.6
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++|++|+|+. ++++|+|+|+++++||.+||+|+||||||||+|+|+|++
T Consensus 339 ~~i~~~~v~f~y~~--------------------------~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~- 391 (592)
T PRK10790 339 GRIDIDNVSFAYRD--------------------------DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYY- 391 (592)
T ss_pred CeEEEEEEEEEeCC--------------------------CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhccc-
Confidence 35999999998851 145999999999999999999999999999999999987
Q ss_pred CCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC------
Q 044602 148 DDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG------ 217 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg------ 217 (674)
+|.+|+|.+||+++++ .++++|+||+|++.+|++ |++|||.++. ..++ ++++++++.+|
T Consensus 392 ~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~------~~~d----~~i~~a~~~~gl~~~i~ 460 (592)
T PRK10790 392 PLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGR------DISE----EQVWQALETVQLAELAR 460 (592)
T ss_pred CCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCC------CCCH----HHHHHHHHHcCcHHHHH
Confidence 4569999999999863 578999999999999998 9999999863 1122 34555556555
Q ss_pred -CCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchH
Q 044602 218 -LERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSR 296 (674)
Q Consensus 218 -L~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~ 296 (674)
|++..||.+|+.+ ..||||||||++|||||+++|+||+||||||+||+.+++.+.+.|+++.+ ++|+|++||+++.
T Consensus 461 ~lp~Gldt~i~e~g-~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~~- 537 (592)
T PRK10790 461 SLPDGLYTPLGEQG-NNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLST- 537 (592)
T ss_pred hccccccccccCCC-CCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchHH-
Confidence 4567899998754 56999999999999999999999999999999999999999999999865 7999999999854
Q ss_pred HHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 297 MFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 297 i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.+.||+|++|++|++++.|+++|++
T Consensus 538 -l~~~D~ii~l~~G~i~~~G~~~~L~ 562 (592)
T PRK10790 538 -IVEADTILVLHRGQAVEQGTHQQLL 562 (592)
T ss_pred -HHhCCEEEEEECCEEEEEcCHHHHH
Confidence 6779999999999999999999985
No 110
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-43 Score=356.39 Aligned_cols=196 Identities=31% Similarity=0.560 Sum_probs=171.8
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh---hccccEEEEccCCCCCCCCCHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP---ALKRRIGFVTQDDVLLPQLTVE 185 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~---~~~~~igyv~Q~~~l~~~lTV~ 185 (674)
+++|+|+||++++| +++|+||||||||||+++|+|+++ +.+|+|.++|.++.. ..++.++|++|++.+++.+||.
T Consensus 13 ~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 90 (211)
T cd03264 13 KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP-PSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVR 90 (211)
T ss_pred EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCCccccchHHHHhheEEecCCCcccccCCHH
Confidence 45999999999999 999999999999999999999874 569999999987643 3567899999999999999999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 044602 186 ETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD 265 (674)
Q Consensus 186 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD 265 (674)
||+.+....+ ...+.+..++++++++.+||.+..++.+ .+||||||||++|||||+.+|++|+|||||+|||
T Consensus 91 ~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD 162 (211)
T cd03264 91 EFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKKKI-----GSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLD 162 (211)
T ss_pred HHHHHHHHHh---CCCHHHHHHHHHHHHHHCCCHHHHhCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 9999865433 1233344567889999999987777665 4899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEec
Q 044602 266 STSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYG 316 (674)
Q Consensus 266 ~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 316 (674)
+.++..+.+.|+++++ ++|||++||++. .+.+++|++++|++|++++.|
T Consensus 163 ~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 163 PEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 9999999999999976 699999999975 467889999999999998765
No 111
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-43 Score=364.13 Aligned_cols=216 Identities=22% Similarity=0.379 Sum_probs=184.5
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++|++++|+ .+.+|+|+||++++||+++|+||||||||||+++|+|+.+
T Consensus 11 ~~l~~~~l~~~~~---------------------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 63 (258)
T PRK14268 11 PQIKVENLNLWYG---------------------------EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMND 63 (258)
T ss_pred eeEEEeeeEEEeC---------------------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3589999998763 2458999999999999999999999999999999999875
Q ss_pred C----CCccEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC
Q 044602 148 D----DVKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG 217 (674)
Q Consensus 148 ~----~~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 217 (674)
+ +.+|+|.++|+++.. ..++.++|++|++.+++ +||+||+.+..... ..+.++..++++++++.++
T Consensus 64 ~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~ 139 (258)
T PRK14268 64 LIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAA 139 (258)
T ss_pred cccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcC
Confidence 3 369999999988631 34678999999998888 79999999875432 1234444567888999998
Q ss_pred CC----ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCC
Q 044602 218 LE----RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQP 293 (674)
Q Consensus 218 L~----~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 293 (674)
+. +..++. +..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ |+|||++||++
T Consensus 140 l~~~~~~~~~~~-----~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~ 213 (258)
T PRK14268 140 LWDETSDRLKSP-----ALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNM 213 (258)
T ss_pred CCcchhhhhcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCH
Confidence 84 334444 458999999999999999999999999999999999999999999999965 89999999997
Q ss_pred chHHHhhcCEEEEEeCCEEEEecChhHH
Q 044602 294 SSRMFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 294 ~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
. ++.++||++++|++|++++.|+++++
T Consensus 214 ~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 240 (258)
T PRK14268 214 Q-QAARISDYTGFFLMGELIEFGQTRQI 240 (258)
T ss_pred H-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 5 46788999999999999999999876
No 112
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.3e-44 Score=354.69 Aligned_cols=209 Identities=26% Similarity=0.448 Sum_probs=187.3
Q ss_pred ccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-----hccccEEEEccCCCCCCC
Q 044602 107 DYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-----ALKRRIGFVTQDDVLLPQ 181 (674)
Q Consensus 107 ~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~~l~~~ 181 (674)
+.-.+++||||++++||+++|+||||||||||+|+|+|.++ |++|+|.++|+++.. ..|..++--||...+|++
T Consensus 15 GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~-P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~ 93 (250)
T COG0411 15 GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK-PSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPG 93 (250)
T ss_pred CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc-CCCceEEECCcccCCCCHHHHHhccceeecccccccCC
Confidence 44679999999999999999999999999999999999885 569999999999863 346678999999999999
Q ss_pred CCHHHHHHHHHhhcC--------CC-CCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCC
Q 044602 182 LTVEETLVFAAFLRL--------PG-NMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDP 252 (674)
Q Consensus 182 lTV~e~l~~~~~~~~--------~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P 252 (674)
|||.||+..++..+. +. ....++..+++.++|+.+||.+.+|++.| +||+|||||+.|||||+.+|
T Consensus 94 lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~-----~LsyG~qR~LEIArALa~~P 168 (250)
T COG0411 94 LTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG-----NLSYGQQRRLEIARALATQP 168 (250)
T ss_pred CcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-----cCChhHhHHHHHHHHHhcCC
Confidence 999999998865331 11 12356667889999999999999999876 79999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 253 SLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 253 ~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
++|+||||.+||.+....++.+.|++++++ |.||++|-||.. .+..+||||+||+.|+++.+|+|+|+.
T Consensus 169 ~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~-~Vm~l~dri~Vl~~G~~IAeG~P~eV~ 238 (250)
T COG0411 169 KLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK-LVMGLADRIVVLNYGEVIAEGTPEEVR 238 (250)
T ss_pred CEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH-HHhhhccEEEeccCCcCcccCCHHHHh
Confidence 999999999999999999999999999984 799999999975 589999999999999999999999985
No 113
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=4.4e-43 Score=375.42 Aligned_cols=227 Identities=26% Similarity=0.433 Sum_probs=191.8
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++||++.|... .+...+|+||||+|++||+++|+|+||||||||+++|+|+++
T Consensus 11 ~~L~i~~l~~~~~~~-----------------------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~ 67 (330)
T PRK09473 11 ALLDVKDLRVTFSTP-----------------------DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLA 67 (330)
T ss_pred ceEEEeCeEEEEecC-----------------------CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 358999999988531 122469999999999999999999999999999999999885
Q ss_pred CC--CccEEEECCEeCCh----h---cc-ccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHH
Q 044602 148 DD--VKGNITYNDIPYNP----A---LK-RRIGFVTQDD--VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKE 215 (674)
Q Consensus 148 ~~--~~G~I~~~g~~~~~----~---~~-~~igyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~ 215 (674)
+. .+|+|.++|+++.. . +| +.|+||+|++ .+.|.+|+.+++........ ...+++..+++.++++.
T Consensus 68 p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~ 145 (330)
T PRK09473 68 ANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDA 145 (330)
T ss_pred CCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH
Confidence 43 48999999998742 2 23 4799999997 68899999999987654321 23455666788999999
Q ss_pred cCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCc
Q 044602 216 LGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPS 294 (674)
Q Consensus 216 lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~ 294 (674)
+||++..+. + +.++++|||||||||+|||||+.+|++||+||||+|||+.++..+++.|++++++ |.|+|++|||+.
T Consensus 146 vgL~~~~~~-~-~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~ 223 (330)
T PRK09473 146 VKMPEARKR-M-KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG 223 (330)
T ss_pred cCCCChHHH-h-cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 999764322 2 3467899999999999999999999999999999999999999999999999875 899999999976
Q ss_pred hHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 295 SRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 295 ~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.+.++||+|++|++|++++.|+++++.
T Consensus 224 -~~~~~~Dri~vm~~G~ive~g~~~~i~ 250 (330)
T PRK09473 224 -VVAGICDKVLVMYAGRTMEYGNARDVF 250 (330)
T ss_pred -HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 467899999999999999999999875
No 114
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.5e-43 Score=366.30 Aligned_cols=216 Identities=24% Similarity=0.432 Sum_probs=184.8
Q ss_pred EEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 044602 70 LKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD 149 (674)
Q Consensus 70 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~ 149 (674)
++++||+++|+ .+.+|+|+|+++++||+++|+||||||||||+|+|+|.+ ++
T Consensus 2 l~~~~l~~~~~---------------------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p 53 (271)
T PRK13638 2 LATSDLWFRYQ---------------------------DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLL-RP 53 (271)
T ss_pred eEEEEEEEEcC---------------------------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CC
Confidence 68899998763 245999999999999999999999999999999999987 45
Q ss_pred CccEEEECCEeCC------hhccccEEEEccCCCC-CCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccc
Q 044602 150 VKGNITYNDIPYN------PALKRRIGFVTQDDVL-LPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCR 222 (674)
Q Consensus 150 ~~G~I~~~g~~~~------~~~~~~igyv~Q~~~l-~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 222 (674)
.+|+|.++|+++. ...++.++||+|++.+ +...|+.||+.+..... ....++..++++++++.+||.+..
T Consensus 54 ~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~ 130 (271)
T PRK13638 54 QKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFR 130 (271)
T ss_pred CccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHh
Confidence 6999999999873 1345689999999752 34458999998864332 223444556788999999998777
Q ss_pred cccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcC
Q 044602 223 HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFD 302 (674)
Q Consensus 223 ~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 302 (674)
++.+ ..||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||
T Consensus 131 ~~~~-----~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d 204 (271)
T PRK13638 131 HQPI-----QCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISD 204 (271)
T ss_pred cCCc-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCC
Confidence 7654 489999999999999999999999999999999999999999999999877999999999975 4678899
Q ss_pred EEEEEeCCEEEEecChhHHH
Q 044602 303 KLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 303 ~v~~L~~G~iv~~G~~~~~~ 322 (674)
++++|++|++++.|+++++.
T Consensus 205 ~i~~l~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 205 AVYVLRQGQILTHGAPGEVF 224 (271)
T ss_pred EEEEEECCEEEEeCCHHHHh
Confidence 99999999999999998764
No 115
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.3e-43 Score=355.21 Aligned_cols=191 Identities=31% Similarity=0.512 Sum_probs=166.0
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-hccccEEEEccCCC-CCCCCCHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-ALKRRIGFVTQDDV-LLPQLTVEE 186 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-~~~~~igyv~Q~~~-l~~~lTV~e 186 (674)
+.+|+|+||++++||+++|+|||||||||||++|+|.. ++.+|+|.++|.++.. ..++.++|++|++. .+..+||+|
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e 91 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLI-KESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVRE 91 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHH
Confidence 46999999999999999999999999999999999987 4569999999998753 45668999999974 334569999
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 044602 187 TLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDS 266 (674)
Q Consensus 187 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~ 266 (674)
|+.++.... . ...++++++++.+||.+..++.+ ++||||||||++|||||+.+|++|+|||||+|||+
T Consensus 92 ~l~~~~~~~-----~--~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~ 159 (205)
T cd03226 92 ELLLGLKEL-----D--AGNEQAETVLKDLDLYALKERHP-----LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDY 159 (205)
T ss_pred HHhhhhhhc-----C--ccHHHHHHHHHHcCCchhcCCCc-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCH
Confidence 998865322 1 11256789999999988777765 48999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEE
Q 044602 267 TSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPV 313 (674)
Q Consensus 267 ~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 313 (674)
.++..+.+.|++++++|+|+|++||++. ++.++||++++|++|+++
T Consensus 160 ~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 160 KNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEC
Confidence 9999999999999877999999999976 467889999999999975
No 116
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-43 Score=361.85 Aligned_cols=219 Identities=26% Similarity=0.398 Sum_probs=186.2
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|. .+.+|+|+||++++||+++|+||||||||||+++|+|..++
T Consensus 3 ~l~~~~l~~~~~---------------------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~ 55 (250)
T PRK14247 3 KIEIRDLKVSFG---------------------------QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIEL 55 (250)
T ss_pred eEEEEeeEEEEC---------------------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 378999998763 24589999999999999999999999999999999998753
Q ss_pred ----CCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc
Q 044602 149 ----DVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER 220 (674)
Q Consensus 149 ----~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 220 (674)
+.+|+|.++|.++.. .+++.+||++|++.+++.+||.||+.++...... ....++..+.++++++.+||.+
T Consensus 56 ~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~ 134 (250)
T PRK14247 56 YPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWD 134 (250)
T ss_pred CCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCc
Confidence 369999999998742 4567899999999888889999999987543211 1133445567889999999864
Q ss_pred ----cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchH
Q 044602 221 ----CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSR 296 (674)
Q Consensus 221 ----~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~ 296 (674)
..++. +.+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ |+|+|++||++. +
T Consensus 135 ~~~~~~~~~-----~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~ 207 (250)
T PRK14247 135 EVKDRLDAP-----AGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-Q 207 (250)
T ss_pred chhhhhcCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-H
Confidence 33443 458999999999999999999999999999999999999999999999865 899999999976 4
Q ss_pred HHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 297 MFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 297 i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+.+.||++++|++|++++.|+++++.
T Consensus 208 ~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 208 AARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred HHHhcCEEEEEECCeEEEECCHHHHH
Confidence 67899999999999999999998763
No 117
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-43 Score=367.98 Aligned_cols=203 Identities=28% Similarity=0.433 Sum_probs=177.3
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-----hccccEEEEccCCC-CCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-----ALKRRIGFVTQDDV-LLPQL 182 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~~-l~~~l 182 (674)
+.+|+|+||++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|.++.. ..++.+||++|++. .+...
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 93 (274)
T PRK13644 15 TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR-PQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGR 93 (274)
T ss_pred CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccc
Confidence 459999999999999999999999999999999999874 569999999998742 35678999999975 35567
Q ss_pred CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 044602 183 TVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTS 262 (674)
Q Consensus 183 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTs 262 (674)
||.||+.+..... ..+..+..++++++++.+||.+..++.+ +.||||||||++|||||+.+|++|||||||+
T Consensus 94 tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~laral~~~p~lllLDEPt~ 165 (274)
T PRK13644 94 TVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSP-----KTLSGGQGQCVALAGILTMEPECLIFDEVTS 165 (274)
T ss_pred hHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 9999999875332 2345555677899999999988777765 4899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 263 GLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 263 gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
|||+.++..+.+.|++++++|+|||++||++.. + ..||++++|++|++++.|+++++.
T Consensus 166 gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~-~-~~~d~v~~l~~G~i~~~g~~~~~~ 223 (274)
T PRK13644 166 MLDPDSGIAVLERIKKLHEKGKTIVYITHNLEE-L-HDADRIIVMDRGKIVLEGEPENVL 223 (274)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-H-hhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999998779999999999864 5 569999999999999999998864
No 118
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=3.1e-43 Score=356.27 Aligned_cols=210 Identities=30% Similarity=0.526 Sum_probs=177.5
Q ss_pred EEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 044602 70 LKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD 149 (674)
Q Consensus 70 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~ 149 (674)
++++||+++|+.. .+.+++|+|+||++++||+++|+||||||||||+++|+|.. ++
T Consensus 2 l~~~~v~~~~~~~-----------------------~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~-~~ 57 (221)
T TIGR02211 2 LKCENLGKRYQEG-----------------------KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLD-NP 57 (221)
T ss_pred EEEEeeeEEccCC-----------------------CcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CC
Confidence 6789999877421 01246999999999999999999999999999999999987 45
Q ss_pred CccEEEECCEeCCh----h---cc-ccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 044602 150 VKGNITYNDIPYNP----A---LK-RRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC 221 (674)
Q Consensus 150 ~~G~I~~~g~~~~~----~---~~-~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 221 (674)
.+|+|.++|+++.. . ++ +.++|++|++.+++.+||+||+.+....+ .....+..+++.++++.+||++.
T Consensus 58 ~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~ 134 (221)
T TIGR02211 58 TSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG---KKSVKEAKERAYEMLEKVGLEHR 134 (221)
T ss_pred CCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhh
Confidence 69999999998742 1 23 57999999999999999999999865432 12333445678899999999877
Q ss_pred ccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhh
Q 044602 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHM 300 (674)
Q Consensus 222 ~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~ 300 (674)
.++.+ +.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++.. + ..
T Consensus 135 ~~~~~-----~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~-~-~~ 207 (221)
T TIGR02211 135 INHRP-----SELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLEL-A-KK 207 (221)
T ss_pred hhCCh-----hhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-hh
Confidence 77654 489999999999999999999999999999999999999999999999864 8999999999863 4 45
Q ss_pred cCEEEEEeCCEEE
Q 044602 301 FDKLLLISEGYPV 313 (674)
Q Consensus 301 ~D~v~~L~~G~iv 313 (674)
+|++++|++|+++
T Consensus 208 ~d~v~~l~~G~i~ 220 (221)
T TIGR02211 208 LDRVLEMKDGQLF 220 (221)
T ss_pred cCEEEEEeCCEec
Confidence 8999999999975
No 119
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=3.8e-43 Score=356.08 Aligned_cols=195 Identities=29% Similarity=0.453 Sum_probs=170.8
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-------hccccEEEEccCCCCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-------ALKRRIGFVTQDDVLLPQ 181 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-------~~~~~igyv~Q~~~l~~~ 181 (674)
+.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. .+++.++|++|++.+++.
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~ 93 (222)
T PRK10908 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIE-RPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMD 93 (222)
T ss_pred CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEcccCChhHHHHHHhheEEEecCcccccc
Confidence 45899999999999999999999999999999999987 4569999999998642 146789999999988888
Q ss_pred CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 044602 182 LTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPT 261 (674)
Q Consensus 182 lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPT 261 (674)
+||+||+.+..... ....++..++++++++.+++.+..++.+ .+||||||||++|||||+.+|++|+|||||
T Consensus 94 ~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt 165 (222)
T PRK10908 94 RTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNFP-----IQLSGGEQQRVGIARAVVNKPAVLLADEPT 165 (222)
T ss_pred ccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 99999999875432 2234444567889999999987766654 489999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEE
Q 044602 262 SGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPV 313 (674)
Q Consensus 262 sgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 313 (674)
+|||+.++..+.+.|++++++|.|+|++||++. ++...||++++|++|+++
T Consensus 166 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 166 GNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLSDGHLH 216 (222)
T ss_pred CcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEc
Confidence 999999999999999999877899999999976 477889999999999975
No 120
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6e-43 Score=373.91 Aligned_cols=228 Identities=21% Similarity=0.367 Sum_probs=191.7
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||++.|+...... . ..+...+|+||||+|++||+++|+|+||||||||+++|+|+++
T Consensus 5 ~l~v~nl~~~~~~~~~~~----------------~-~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~- 66 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLF----------------K-PERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET- 66 (327)
T ss_pred eEEEeeeEEEEcCCCCcc----------------c-cCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC-
Confidence 489999999886321100 0 0112469999999999999999999999999999999999874
Q ss_pred CCccEEEECCEeCCh-------hccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 044602 149 DVKGNITYNDIPYNP-------ALKRRIGFVTQDD--VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE 219 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~-------~~~~~igyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 219 (674)
+.+|+|.++|+++.. .+++.++||+|++ .+.|.+||.+++........ ...+++..+++.++++.+||.
T Consensus 67 p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~ 144 (327)
T PRK11308 67 PTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT--SLSAAERREKALAMMAKVGLR 144 (327)
T ss_pred CCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHCCCC
Confidence 569999999998742 3567899999997 58899999999987654321 234556667899999999996
Q ss_pred c-cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHH
Q 044602 220 R-CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRM 297 (674)
Q Consensus 220 ~-~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i 297 (674)
+ ..++. +++|||||||||+|||||+.+|++||+||||++||..++.++++.|+++.++ |.|+|++|||.. .+
T Consensus 145 ~~~~~~~-----p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~ 218 (327)
T PRK11308 145 PEHYDRY-----PHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VV 218 (327)
T ss_pred hHHhcCC-----CccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HH
Confidence 3 45554 5699999999999999999999999999999999999999999999999874 999999999975 46
Q ss_pred HhhcCEEEEEeCCEEEEecChhHHH
Q 044602 298 FHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 298 ~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.++||+|++|++|++++.|+++++.
T Consensus 219 ~~~adrv~vm~~G~ive~g~~~~~~ 243 (327)
T PRK11308 219 EHIADEVMVMYLGRCVEKGTKEQIF 243 (327)
T ss_pred HHhCCEEEEEECCEEEEECCHHHHh
Confidence 7899999999999999999998875
No 121
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=4.4e-43 Score=362.50 Aligned_cols=204 Identities=28% Similarity=0.414 Sum_probs=177.6
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-----------------hccccEEE
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-----------------ALKRRIGF 171 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-----------------~~~~~igy 171 (674)
+.+|+|+||++++||+++|+||||||||||+|+|+|... +.+|+|.++|+++.. ..++.++|
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~ 91 (252)
T TIGR03005 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP-IDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGM 91 (252)
T ss_pred eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEccccccccccccccchhHHHHHhhCeEE
Confidence 458999999999999999999999999999999999874 569999999987631 34678999
Q ss_pred EccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhC
Q 044602 172 VTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVD 251 (674)
Q Consensus 172 v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~ 251 (674)
++|++.+++..||.||+.++.... ......+..+.++++++.+|+.+..++.+ ++||||||||++|||||+.+
T Consensus 92 v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~laral~~~ 164 (252)
T TIGR03005 92 VFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHMP-----AQLSGGQQQRVAIARALAMR 164 (252)
T ss_pred EecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcCh-----hhcCHHHHHHHHHHHHHHcC
Confidence 999999999899999998864211 11234445567889999999987766654 58999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHH
Q 044602 252 PSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 252 P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
|++|+|||||+|||+.++..+.+.|++++++ |+|+|++||++. ++.+++|++++|++|++++.|+++++
T Consensus 165 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T TIGR03005 165 PKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRVCFFDKGRIVEQGKPDEI 234 (252)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999875 899999999975 46789999999999999999998876
No 122
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=4.8e-43 Score=359.91 Aligned_cols=205 Identities=24% Similarity=0.387 Sum_probs=176.6
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-----hccccEEEEccCCCCCCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-----ALKRRIGFVTQDDVLLPQLT 183 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~~l~~~lT 183 (674)
+++|+|+||++++||+++|+||||||||||+++|+|.++ +.+|+|.++|.++.. ..++.++|++|++.+++.+|
T Consensus 15 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 93 (242)
T TIGR03411 15 FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR-PDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLT 93 (242)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCC
Confidence 458999999999999999999999999999999999874 569999999988742 13457999999999999999
Q ss_pred HHHHHHHHHhhcCC--C---CCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEe
Q 044602 184 VEETLVFAAFLRLP--G---NMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLD 258 (674)
Q Consensus 184 V~e~l~~~~~~~~~--~---~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLD 258 (674)
|+||+.++...... . ....++..++++++++.+|+.+..++.+ +.||||||||++|||||+.+|++|+||
T Consensus 94 v~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Ge~qrv~laral~~~p~~lllD 168 (242)
T TIGR03411 94 VFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLA-----GLLSHGQKQWLEIGMLLMQDPKLLLLD 168 (242)
T ss_pred HHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 99999986432100 0 0122344567899999999988777665 489999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHH
Q 044602 259 EPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 259 EPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
|||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||++++|++|++++.|+++++
T Consensus 169 EPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~g~~~~~~~~~~~ 229 (242)
T TIGR03411 169 EPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLHQGSVLAEGSLDQV 229 (242)
T ss_pred CCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEECCeEEeeCCHHHH
Confidence 99999999999999999999976 799999999975 47789999999999999999998876
No 123
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.9e-43 Score=362.59 Aligned_cols=219 Identities=21% Similarity=0.359 Sum_probs=186.2
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|+++.|+ .+++|+|+|+++++||+++|+||||||||||+++|+|.. +
T Consensus 5 ~l~~~~l~~~~~---------------------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~ 56 (255)
T PRK11300 5 LLSVSGLMMRFG---------------------------GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFY-K 56 (255)
T ss_pred eEEEeeEEEEEC---------------------------CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCc-C
Confidence 589999998763 246999999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEeCCh----h-ccccEEEEccCCCCCCCCCHHHHHHHHHhhcCC----------CCC--CHHHHHHHHHH
Q 044602 149 DVKGNITYNDIPYNP----A-LKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLP----------GNM--NRQQKYARVQM 211 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~----~-~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~----------~~~--~~~~~~~~v~~ 211 (674)
+.+|+|.++|.++.. . .+..++|++|++.+++.+||+||+.++...... ... ...+..+++++
T Consensus 57 ~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (255)
T PRK11300 57 PTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAAT 136 (255)
T ss_pred CCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHH
Confidence 569999999998742 2 244699999999999999999999986431110 000 11233456788
Q ss_pred HHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEe
Q 044602 212 ILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTI 290 (674)
Q Consensus 212 ~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~ 290 (674)
+++.+||.+..++.+ ++||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++|
T Consensus 137 ~l~~~gl~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~s 211 (255)
T PRK11300 137 WLERVGLLEHANRQA-----GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIE 211 (255)
T ss_pred HHHhCChhhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEe
Confidence 999999987777665 489999999999999999999999999999999999999999999999875 89999999
Q ss_pred cCCchHHHhhcCEEEEEeCCEEEEecChhHH
Q 044602 291 HQPSSRMFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 291 H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
|++. ++.++||++++|++|++++.|+++++
T Consensus 212 H~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 241 (255)
T PRK11300 212 HDMK-LVMGISDRIYVVNQGTPLANGTPEEI 241 (255)
T ss_pred CCHH-HHHHhCCEEEEEECCeEEecCCHHHH
Confidence 9975 57789999999999999999998876
No 124
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=3.9e-43 Score=360.53 Aligned_cols=209 Identities=27% Similarity=0.363 Sum_probs=175.2
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC-CCCccEEEECCEeCCh----h-ccccEEEEccCCCCCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT-DDVKGNITYNDIPYNP----A-LKRRIGFVTQDDVLLPQL 182 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~-~~~~G~I~~~g~~~~~----~-~~~~igyv~Q~~~l~~~l 182 (674)
+.+|+|+|+++++||+++|+||||||||||+|+|+|+.. ++.+|+|.++|+++.. . .+..++|++|++.+++.+
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (243)
T TIGR01978 13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGV 92 (243)
T ss_pred EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCc
Confidence 458999999999999999999999999999999999852 4679999999998642 2 234599999999999999
Q ss_pred CHHHHHHHHHhhcCC---C-CCCHHHHHHHHHHHHHHcCCCc-cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEE
Q 044602 183 TVEETLVFAAFLRLP---G-NMNRQQKYARVQMILKELGLER-CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLL 257 (674)
Q Consensus 183 TV~e~l~~~~~~~~~---~-~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illL 257 (674)
|++||+.+....... . .....+..++++++++.+||++ ..++.++ .+||||||||++|||+|+.+|++|+|
T Consensus 93 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LS~G~~qrl~la~al~~~p~llll 168 (243)
T TIGR01978 93 SNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----EGFSGGEKKRNEILQMALLEPKLAIL 168 (243)
T ss_pred CHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----cCcCHHHHHHHHHHHHHhcCCCEEEe
Confidence 999999886532210 0 1122334567889999999973 4555442 24999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhh-cCEEEEEeCCEEEEecChhHHH
Q 044602 258 DEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHM-FDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 258 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~-~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
||||+|||+.++..+.+.|++++++|+|||++||+++ .+... ||++++|++|++++.|++++..
T Consensus 169 DEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 169 DEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLLDGRIVKSGDVELAK 233 (243)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEeCCEEEEecCHHHhc
Confidence 9999999999999999999999877999999999976 46666 8999999999999999987543
No 125
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.1e-43 Score=366.07 Aligned_cols=220 Identities=23% Similarity=0.400 Sum_probs=185.2
Q ss_pred EEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 044602 70 LKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD 149 (674)
Q Consensus 70 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~ 149 (674)
++++||+++|+... ...+++|+|+|+++++||+++|+||||||||||+++|+|+++ +
T Consensus 3 l~~~~l~~~~~~~~----------------------~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-p 59 (280)
T PRK13649 3 INLQNVSYTYQAGT----------------------PFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV-P 59 (280)
T ss_pred EEEEEEEEEcCCCC----------------------ccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-C
Confidence 78999999875210 011459999999999999999999999999999999999874 5
Q ss_pred CccEEEECCEeCCh--------hccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 044602 150 VKGNITYNDIPYNP--------ALKRRIGFVTQDD--VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE 219 (674)
Q Consensus 150 ~~G~I~~~g~~~~~--------~~~~~igyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 219 (674)
.+|+|.++|+++.. ..++.++|++|++ .+++ .||+||+.+..... ....++..++++++++.+||.
T Consensus 60 ~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~ 135 (280)
T PRK13649 60 TQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGIS 135 (280)
T ss_pred CceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCC
Confidence 69999999998642 3466899999996 4565 59999999865332 123444556788999999997
Q ss_pred c-cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHH
Q 044602 220 R-CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMF 298 (674)
Q Consensus 220 ~-~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~ 298 (674)
+ ..++.+ ++||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.
T Consensus 136 ~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~ 209 (280)
T PRK13649 136 ESLFEKNP-----FELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVA 209 (280)
T ss_pred hhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHH
Confidence 3 456554 489999999999999999999999999999999999999999999999877999999999975 477
Q ss_pred hhcCEEEEEeCCEEEEecChhHHH
Q 044602 299 HMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 299 ~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
++||++++|++|++++.|+++++.
T Consensus 210 ~~~d~i~~l~~G~i~~~g~~~~~~ 233 (280)
T PRK13649 210 NYADFVYVLEKGKLVLSGKPKDIF 233 (280)
T ss_pred HhCCEEEEEECCEEEEeCCHHHHh
Confidence 889999999999999999998874
No 126
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-43 Score=347.87 Aligned_cols=204 Identities=28% Similarity=0.501 Sum_probs=176.9
Q ss_pred cccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-----hccccEEEEccCCCCCCCC
Q 044602 108 YKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-----ALKRRIGFVTQDDVLLPQL 182 (674)
Q Consensus 108 ~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~~l~~~l 182 (674)
..++|++||+++++||+++|+||||+|||||||+|+|..+ +.+|+|.++|+++.. ..|..++||||...+||.|
T Consensus 15 ~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~-~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~L 93 (237)
T COG0410 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR-PRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRL 93 (237)
T ss_pred ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhC
Confidence 4679999999999999999999999999999999999884 459999999999863 4678899999999999999
Q ss_pred CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 044602 183 TVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG-LERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPT 261 (674)
Q Consensus 183 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPT 261 (674)
||+|||..++..+.. ++......+++.+.|- |.+..+++-| .|||||||.++|||||+.+|++|+|||||
T Consensus 94 TVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG-----~LSGGEQQMLAiaRALm~~PklLLLDEPs 164 (237)
T COG0410 94 TVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAG-----TLSGGEQQMLAIARALMSRPKLLLLDEPS 164 (237)
T ss_pred cHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCccc-----CCChHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 999999998654321 1122222677887773 5566666655 79999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 262 SGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 262 sgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.||-|.-.++|.+.+++++++ |.||+++-++.. ...+++||.++|.+|++++.|+.+|+.
T Consensus 165 ~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle~Griv~~G~~~eL~ 225 (237)
T COG0410 165 EGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVLENGRIVLSGTAAELL 225 (237)
T ss_pred cCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEEeCCEEEEecCHHHHh
Confidence 999999999999999999976 779999887754 578899999999999999999999885
No 127
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-43 Score=362.35 Aligned_cols=200 Identities=32% Similarity=0.496 Sum_probs=174.4
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETL 188 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l 188 (674)
+.+|+|+||++++||+++|+||||||||||+++|+|+. ++.+|+|.++|+++.. .++.++|++|++.+++.+||.||+
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~-~~~~~~~v~q~~~~~~~~tv~e~l 91 (255)
T PRK11248 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFV-PYQHGSITLDGKPVEG-PGAERGVVFQNEGLLPWRNVQDNV 91 (255)
T ss_pred eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEECCC-CCCcEEEEeCCCccCCCCcHHHHH
Confidence 45899999999999999999999999999999999987 4569999999998753 335699999999999989999999
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTS 268 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~ 268 (674)
.+....+ .....+..++++++++.+||.+..++.+ .+||||||||++|||||+.+|++|||||||+|||+.+
T Consensus 92 ~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~ 163 (255)
T PRK11248 92 AFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRYI-----WQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFT 163 (255)
T ss_pred HhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence 8865432 2334445567899999999987777654 4899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-CCcEEEEEecCCchHHHhhcCEEEEEe--CCEEEEecChh
Q 044602 269 ANKLIQVLQKVAK-AGRTVITTIHQPSSRMFHMFDKLLLIS--EGYPVYYGKAR 319 (674)
Q Consensus 269 ~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~--~G~iv~~G~~~ 319 (674)
+..+.+.|+++++ +|+|||++||++. .+.++||++++|+ +|+++..++.+
T Consensus 164 ~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 164 REQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 9999999999865 5899999999976 5788999999998 59999988654
No 128
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.4e-43 Score=363.50 Aligned_cols=219 Identities=25% Similarity=0.387 Sum_probs=187.4
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++|++++|+. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.
T Consensus 6 ~~l~i~~l~~~~~~-------------------------~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~- 59 (269)
T PRK13648 6 SIIVFKNVSFQYQS-------------------------DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIE- 59 (269)
T ss_pred ceEEEEEEEEEcCC-------------------------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-
Confidence 35899999997741 1245899999999999999999999999999999999987
Q ss_pred CCCccEEEECCEeCCh----hccccEEEEccCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccc
Q 044602 148 DDVKGNITYNDIPYNP----ALKRRIGFVTQDDV-LLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCR 222 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 222 (674)
++.+|+|.++|+++.. ..++.++|++|++. +++..|+.+|+.+..... ....++..++++++++.+|+.+..
T Consensus 60 ~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~ 136 (269)
T PRK13648 60 KVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERA 136 (269)
T ss_pred CCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhh
Confidence 4569999999998742 45678999999974 677789999998875332 123444556788999999998777
Q ss_pred cccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhc
Q 044602 223 HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMF 301 (674)
Q Consensus 223 ~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~ 301 (674)
++.+ ++||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++.. +. .|
T Consensus 137 ~~~~-----~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~-~~-~~ 209 (269)
T PRK13648 137 DYEP-----NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSE-AM-EA 209 (269)
T ss_pred hCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchH-Hh-cC
Confidence 7654 589999999999999999999999999999999999999999999999765 8999999999864 54 49
Q ss_pred CEEEEEeCCEEEEecChhHHH
Q 044602 302 DKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 302 D~v~~L~~G~iv~~G~~~~~~ 322 (674)
|++++|++|++++.|+++++.
T Consensus 210 d~i~~l~~G~i~~~g~~~~~~ 230 (269)
T PRK13648 210 DHVIVMNKGTVYKEGTPTEIF 230 (269)
T ss_pred CEEEEEECCEEEEecCHHHHh
Confidence 999999999999999998864
No 129
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-43 Score=363.31 Aligned_cols=217 Identities=28% Similarity=0.469 Sum_probs=186.1
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|+++.|+ .+.+|+|+||++++||+++|+||||||||||+++|+|+. +
T Consensus 2 ~l~~~~l~~~~~---------------------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~ 53 (258)
T PRK13548 2 MLEARNLSVRLG---------------------------GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGEL-S 53 (258)
T ss_pred eEEEEeEEEEeC---------------------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-C
Confidence 378899998763 245899999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccc
Q 044602 149 DVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHT 224 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 224 (674)
+.+|+|.++|.++.. ..++.++|++|++.+++.+||+||+.+..... ....++..++++++++.+||.+..++
T Consensus 54 p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~ 130 (258)
T PRK13548 54 PDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGR 130 (258)
T ss_pred CCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcC
Confidence 569999999998642 34567999999998878889999999864321 11223344568899999999877777
Q ss_pred cccCCccCccCHHHHHHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEecCCchHH
Q 044602 225 RVGGGFIKGISGGERKRTSIGYEIL------VDPSLLLLDEPTSGLDSTSANKLIQVLQKVA-KAGRTVITTIHQPSSRM 297 (674)
Q Consensus 225 ~vg~~~~~~LSgGerqRv~iA~aL~------~~P~illLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~~~H~~~~~i 297 (674)
.+ .+||||||||++|||||+ .+|++|+|||||+|||+.++..+.+.|++++ ++|+|||++||++. ++
T Consensus 131 ~~-----~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~ 204 (258)
T PRK13548 131 DY-----PQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LA 204 (258)
T ss_pred Cc-----ccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HH
Confidence 65 489999999999999999 5999999999999999999999999999998 56899999999975 47
Q ss_pred HhhcCEEEEEeCCEEEEecChhHHH
Q 044602 298 FHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 298 ~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.++||++++|++|++++.|+++++.
T Consensus 205 ~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 205 ARYADRIVLLHQGRLVADGTPAEVL 229 (258)
T ss_pred HHhcCEEEEEECCEEEeeCCHHHHh
Confidence 7899999999999999999988764
No 130
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.3e-43 Score=361.71 Aligned_cols=217 Identities=24% Similarity=0.361 Sum_probs=184.1
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++++|+ .+.+|+|+||++++||+++|+||||||||||+|+|+|.+++
T Consensus 7 ~l~~~~l~~~~~---------------------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 59 (254)
T PRK14273 7 IIETENLNLFYT---------------------------DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDL 59 (254)
T ss_pred eEEEeeeEEEeC---------------------------CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccC
Confidence 589999999773 14589999999999999999999999999999999998754
Q ss_pred ----CCccEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC
Q 044602 149 ----DVKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL 218 (674)
Q Consensus 149 ----~~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 218 (674)
+.+|+|.++|+++.. ..++.++|++|++.+++ +||+||+.++..... .....+..++++++++.+++
T Consensus 60 ~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l 136 (254)
T PRK14273 60 VEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSAL 136 (254)
T ss_pred CcCCCCceEEEECCEecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCC
Confidence 258999999988631 35678999999988886 799999998754321 11233445678889999987
Q ss_pred C----ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q 044602 219 E----RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPS 294 (674)
Q Consensus 219 ~----~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 294 (674)
. +..++. +++||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|+|++||++.
T Consensus 137 ~~~l~~~~~~~-----~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~~ 210 (254)
T PRK14273 137 WNEVKDKLNTN-----ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNMQ 210 (254)
T ss_pred chhhHHHHhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH
Confidence 3 334544 458999999999999999999999999999999999999999999999964 799999999976
Q ss_pred hHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 295 SRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 295 ~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
++.++||++++|++|+++..|+++++.
T Consensus 211 -~~~~~~d~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 211 -QAGRISDRTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred -HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 477889999999999999999998863
No 131
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-43 Score=365.64 Aligned_cols=219 Identities=26% Similarity=0.463 Sum_probs=187.9
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++|++++|+. +.+.+|+|+|+++++||+++|+||||||||||+++|+|..
T Consensus 6 ~~l~~~nl~~~~~~-------------------------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~- 59 (271)
T PRK13632 6 VMIKVENVSFSYPN-------------------------SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLL- 59 (271)
T ss_pred eEEEEEeEEEEcCC-------------------------CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-
Confidence 46899999997741 1256999999999999999999999999999999999987
Q ss_pred CCCccEEEECCEeCCh----hccccEEEEccCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccc
Q 044602 148 DDVKGNITYNDIPYNP----ALKRRIGFVTQDDV-LLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCR 222 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 222 (674)
++.+|+|.++|.++.. .+++.++|++|++. .++.+||+||+.++.... ....++..++++++++.+||.+..
T Consensus 60 ~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~ 136 (271)
T PRK13632 60 KPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYL 136 (271)
T ss_pred CCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHh
Confidence 4569999999998752 45778999999974 667789999999875322 223444556789999999998877
Q ss_pred cccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhc
Q 044602 223 HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMF 301 (674)
Q Consensus 223 ~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~ 301 (674)
++.+ +.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ ++|||++||++.. + ..|
T Consensus 137 ~~~~-----~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~ 209 (271)
T PRK13632 137 DKEP-----QNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE-A-ILA 209 (271)
T ss_pred hCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH-H-hhC
Confidence 7765 489999999999999999999999999999999999999999999999876 5999999999864 4 479
Q ss_pred CEEEEEeCCEEEEecChhHHH
Q 044602 302 DKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 302 D~v~~L~~G~iv~~G~~~~~~ 322 (674)
|++++|++|+++..|+++++.
T Consensus 210 d~v~~l~~G~i~~~g~~~~~~ 230 (271)
T PRK13632 210 DKVIVFSEGKLIAQGKPKEIL 230 (271)
T ss_pred CEEEEEECCEEEEecCHHHHh
Confidence 999999999999999988764
No 132
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-42 Score=364.03 Aligned_cols=216 Identities=31% Similarity=0.508 Sum_probs=186.1
Q ss_pred EEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 044602 70 LKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD 149 (674)
Q Consensus 70 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~ 149 (674)
++++||+++|.. .+.+|+|+|+++++||+++|+||||||||||+++|+|.+ ++
T Consensus 2 l~~~~l~~~~~~--------------------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~-~~ 54 (275)
T PRK13639 2 LETRDLKYSYPD--------------------------GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGIL-KP 54 (275)
T ss_pred EEEEEEEEEeCC--------------------------CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CC
Confidence 688999987731 245899999999999999999999999999999999987 45
Q ss_pred CccEEEECCEeCCh------hccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 044602 150 VKGNITYNDIPYNP------ALKRRIGFVTQDD--VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC 221 (674)
Q Consensus 150 ~~G~I~~~g~~~~~------~~~~~igyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 221 (674)
.+|+|.++|+++.. ..++.++|++|++ .+++ .||.||+.++.... ...+++..+++.++++.+||.+.
T Consensus 55 ~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~ 130 (275)
T PRK13639 55 TSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFA-PTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGF 130 (275)
T ss_pred CccEEEECCEECccccchHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchh
Confidence 69999999998731 2467899999996 3454 69999998864321 23444555678899999999887
Q ss_pred ccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhc
Q 044602 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMF 301 (674)
Q Consensus 222 ~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~ 301 (674)
.++.+ ++||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+.++|
T Consensus 131 ~~~~~-----~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~ 204 (275)
T PRK13639 131 ENKPP-----HHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYA 204 (275)
T ss_pred hcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhC
Confidence 77765 489999999999999999999999999999999999999999999999877999999999975 467889
Q ss_pred CEEEEEeCCEEEEecChhHHH
Q 044602 302 DKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 302 D~v~~L~~G~iv~~G~~~~~~ 322 (674)
|++++|++|++++.|+++++.
T Consensus 205 d~i~~l~~G~i~~~g~~~~~~ 225 (275)
T PRK13639 205 DKVYVMSDGKIIKEGTPKEVF 225 (275)
T ss_pred CEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999874
No 133
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.7e-43 Score=360.81 Aligned_cols=219 Identities=26% Similarity=0.390 Sum_probs=185.4
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|. .+++|+|+||++++||+++|+||||||||||+++|+|.+++
T Consensus 4 ~l~~~~l~~~~~---------------------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~ 56 (253)
T PRK14267 4 AIETVNLRVYYG---------------------------SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLEL 56 (253)
T ss_pred eEEEEeEEEEeC---------------------------CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCc
Confidence 488999998773 14589999999999999999999999999999999998754
Q ss_pred ----CCccEEEECCEeCC--h----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC
Q 044602 149 ----DVKGNITYNDIPYN--P----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL 218 (674)
Q Consensus 149 ----~~~G~I~~~g~~~~--~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 218 (674)
+.+|+|.++|+++. . .+++.++|++|++.+++.+||.||+.++...+. .....++..++++++++.+||
T Consensus 57 ~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l 135 (253)
T PRK14267 57 NEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNG-LVKSKKELDERVEWALKKAAL 135 (253)
T ss_pred ccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcC-ccCCHHHHHHHHHHHHHHcCC
Confidence 25899999999874 1 356789999999999999999999998754321 011234445678889999998
Q ss_pred Cc----cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q 044602 219 ER----CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPS 294 (674)
Q Consensus 219 ~~----~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 294 (674)
.+ ..++. +.+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++.
T Consensus 136 ~~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~ 209 (253)
T PRK14267 136 WDEVKDRLNDY-----PSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA 209 (253)
T ss_pred ccchhhhhccC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH
Confidence 53 23333 458999999999999999999999999999999999999999999999975 799999999975
Q ss_pred hHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 295 SRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 295 ~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.+.++||++++|++|++++.|+++++.
T Consensus 210 -~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 210 -QAARVSDYVAFLYLGKLIEVGPTRKVF 236 (253)
T ss_pred -HHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 477899999999999999999988763
No 134
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.3e-43 Score=405.03 Aligned_cols=268 Identities=27% Similarity=0.394 Sum_probs=209.0
Q ss_pred CCcccceeeecCCCCcchhHHHHHHHHh---------------------hccccccccccCCCcccc---CCCCceeEEE
Q 044602 17 PSTMGSMQIAAGSNGFGHSIEFMSQAYL---------------------RNRYSEIDIVDESSSIEK---DRPLPIFLKF 72 (674)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~---~~~~~~~l~~ 72 (674)
...+|++++.+|..+.|.++++..+... .++.. ++.+.+++... .......+++
T Consensus 242 ~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~--~~l~~~~~~~~~~~~~~~~~~i~~ 319 (544)
T TIGR01842 242 VLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLN--ELLANYPSRDPAMPLPEPEGHLSV 319 (544)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCCccccCCCCCCCCCCeEEE
Confidence 4467888899999999999887655421 00100 22222111111 1111235999
Q ss_pred EeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCcc
Q 044602 73 EDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKG 152 (674)
Q Consensus 73 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G 152 (674)
+|++|+|+. +.+++|+|+|++++|||.++|+||||||||||+|+|+|.+ ++.+|
T Consensus 320 ~~v~~~y~~-------------------------~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~-~~~~G 373 (544)
T TIGR01842 320 ENVTIVPPG-------------------------GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIW-PPTSG 373 (544)
T ss_pred EEEEEEcCC-------------------------CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCc
Confidence 999998852 1256899999999999999999999999999999999987 45699
Q ss_pred EEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHH-----HHHHHHHHHcCCCcccc
Q 044602 153 NITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKY-----ARVQMILKELGLERCRH 223 (674)
Q Consensus 153 ~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~ 223 (674)
+|.+||+++.+ .+++.++||+|++.+|++ |++||+.++.. ..++++.. ...++.++.+ ++..|
T Consensus 374 ~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~-----~~~~~~~~~~~~~~~~~~~i~~l--~~gl~ 445 (544)
T TIGR01842 374 SVRLDGADLKQWDRETFGKHIGYLPQDVELFPG-TVAENIARFGE-----NADPEKIIEAAKLAGVHELILRL--PDGYD 445 (544)
T ss_pred eEEECCEehhhCCHHHHhhheEEecCCcccccc-cHHHHHhccCC-----CCCHHHHHHHHHHhChHHHHHhC--ccccc
Confidence 99999998753 578899999999999997 99999986421 12222211 1234455544 56678
Q ss_pred ccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCE
Q 044602 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDK 303 (674)
Q Consensus 224 ~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 303 (674)
|.+|+. ...||||||||++|||||+++|++|+|||||||||+.++..+.+.|+++.++|+|+|+++|+++. .+.||+
T Consensus 446 t~~~~~-g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~--~~~~d~ 522 (544)
T TIGR01842 446 TVIGPG-GATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSL--LGCVDK 522 (544)
T ss_pred cccCCC-cCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHH--HHhCCE
Confidence 888764 45799999999999999999999999999999999999999999999987668999999999863 578999
Q ss_pred EEEEeCCEEEEecChhHHHH
Q 044602 304 LLLISEGYPVYYGKARESME 323 (674)
Q Consensus 304 v~~L~~G~iv~~G~~~~~~~ 323 (674)
|++|++|++++.|+++++.+
T Consensus 523 i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 523 ILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred EEEEECCEEEeeCCHHHHhh
Confidence 99999999999999998753
No 135
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.9e-43 Score=365.56 Aligned_cols=218 Identities=30% Similarity=0.471 Sum_probs=187.6
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|+. .+.+|+|+||++++||+++|+||||||||||+|+|+|.+ +
T Consensus 3 ~l~~~~l~~~~~~--------------------------~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~-~ 55 (277)
T PRK13652 3 LIETRDLCYSYSG--------------------------SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGIL-K 55 (277)
T ss_pred eEEEEEEEEEeCC--------------------------CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C
Confidence 3789999997731 135899999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEeCCh----hccccEEEEccCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 044602 149 DVKGNITYNDIPYNP----ALKRRIGFVTQDDV-LLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRH 223 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 223 (674)
+.+|+|.++|+++.. ..++.+|||+|++. .+...||.||+.+..... ....++..++++++++.+||.+..+
T Consensus 56 p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~ 132 (277)
T PRK13652 56 PTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRD 132 (277)
T ss_pred CCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhc
Confidence 569999999998742 45678999999963 233569999998865322 2344555667899999999988777
Q ss_pred ccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcC
Q 044602 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFD 302 (674)
Q Consensus 224 ~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D 302 (674)
+.+ +.||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||
T Consensus 133 ~~~-----~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~d 206 (277)
T PRK13652 133 RVP-----HHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMAD 206 (277)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCC
Confidence 765 489999999999999999999999999999999999999999999999875 899999999976 4778999
Q ss_pred EEEEEeCCEEEEecChhHHH
Q 044602 303 KLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 303 ~v~~L~~G~iv~~G~~~~~~ 322 (674)
++++|++|++++.|+++++.
T Consensus 207 rv~~l~~G~i~~~g~~~~~~ 226 (277)
T PRK13652 207 YIYVMDKGRIVAYGTVEEIF 226 (277)
T ss_pred EEEEEECCeEEEECCHHHHh
Confidence 99999999999999999875
No 136
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=4.8e-43 Score=356.33 Aligned_cols=198 Identities=28% Similarity=0.454 Sum_probs=167.2
Q ss_pred cceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-------hccccEEEEccCC--CCCC
Q 044602 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-------ALKRRIGFVTQDD--VLLP 180 (674)
Q Consensus 110 ~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-------~~~~~igyv~Q~~--~l~~ 180 (674)
++|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. ..++.++|++|++ .+++
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLL-KPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNP 97 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCC
Confidence 5999999999999999999999999999999999987 4569999999998742 3467899999998 5677
Q ss_pred CCCHHHHHHHHHhhcCCCCCCHHHHHHH-HHHHHHHcCCC-ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEe
Q 044602 181 QLTVEETLVFAAFLRLPGNMNRQQKYAR-VQMILKELGLE-RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLD 258 (674)
Q Consensus 181 ~lTV~e~l~~~~~~~~~~~~~~~~~~~~-v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLD 258 (674)
.+||+||+.+....... ....+..+. ++++++.+++. +..++.+ .+||||||||++|||+|+.+|++|+||
T Consensus 98 ~~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~lllLD 170 (228)
T cd03257 98 RMTIGEQIAEPLRIHGK--LSKKEARKEAVLLLLVGVGLPEEVLNRYP-----HELSGGQRQRVAIARALALNPKLLIAD 170 (228)
T ss_pred cCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHHHHCCCChhHhhCCc-----hhcCHHHHHHHHHHHHHhcCCCEEEec
Confidence 89999999886543211 112222222 36889999995 4556554 489999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEec
Q 044602 259 EPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYG 316 (674)
Q Consensus 259 EPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 316 (674)
|||+|||+.++..+.+.|++++++ |+|||++||++. .+.+.||++++|++|+++..|
T Consensus 171 EPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 171 EPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999876 899999999975 467789999999999998765
No 137
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.4e-43 Score=373.28 Aligned_cols=226 Identities=22% Similarity=0.311 Sum_probs=188.7
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||++.|..+ .+...+|+||||++++||+++|+|+||||||||+++|+|++++
T Consensus 3 ~L~v~~l~~~~~~~-----------------------~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~ 59 (326)
T PRK11022 3 LLNVDKLSVHFGDE-----------------------SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDY 59 (326)
T ss_pred eEEEeCeEEEECCC-----------------------CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC
Confidence 47999999988521 1124699999999999999999999999999999999998853
Q ss_pred ---CCccEEEECCEeCCh----hc----cccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHH
Q 044602 149 ---DVKGNITYNDIPYNP----AL----KRRIGFVTQDD--VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKE 215 (674)
Q Consensus 149 ---~~~G~I~~~g~~~~~----~~----~~~igyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~ 215 (674)
+++|+|.++|+++.. .+ ++.++||+|++ .+.|.+||.+++........ ...+++..+++.++++.
T Consensus 60 ~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~ 137 (326)
T PRK11022 60 PGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQ 137 (326)
T ss_pred CCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH
Confidence 368999999998742 11 24699999997 47899999998876654321 23455667789999999
Q ss_pred cCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecCCc
Q 044602 216 LGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK-AGRTVITTIHQPS 294 (674)
Q Consensus 216 lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~ 294 (674)
+||.+..+ .-+.++++|||||||||+|||||+.+|++||+||||+|||+.++.++++.|+++++ .|.|+|++|||+.
T Consensus 138 ~gL~~~~~--~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~ 215 (326)
T PRK11022 138 VGIPDPAS--RLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA 215 (326)
T ss_pred CCCCChHH--HHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 99975211 11234669999999999999999999999999999999999999999999999987 4899999999976
Q ss_pred hHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 295 SRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 295 ~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.+.+++|+|++|++|++++.|+++++.
T Consensus 216 -~~~~~adri~vm~~G~ive~g~~~~~~ 242 (326)
T PRK11022 216 -LVAEAAHKIIVMYAGQVVETGKAHDIF 242 (326)
T ss_pred -HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 467899999999999999999998875
No 138
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=3.5e-43 Score=353.75 Aligned_cols=195 Identities=29% Similarity=0.520 Sum_probs=170.1
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh------hccccEEEEccCCCCCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQL 182 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~l 182 (674)
+.+|+|+||++++||+++|+||||||||||+++|+|.+ ++.+|+|.++|+++.. ..++.++|++|++.+++.+
T Consensus 13 ~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (213)
T cd03262 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLE-EPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHL 91 (213)
T ss_pred eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCC
Confidence 45899999999999999999999999999999999987 4569999999998731 3467899999999999989
Q ss_pred CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 044602 183 TVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTS 262 (674)
Q Consensus 183 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTs 262 (674)
|+.||+.++.... .....++..++++++++.+|+++..++.+ ++||||||||++|||||+.+|++|+|||||+
T Consensus 92 t~~e~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEP~~ 164 (213)
T cd03262 92 TVLENITLAPIKV--KGMSKAEAEERALELLEKVGLADKADAYP-----AQLSGGQQQRVAIARALAMNPKVMLFDEPTS 164 (213)
T ss_pred cHHHHHHhHHHHh--cCCCHHHHHHHHHHHHHHcCCHhHhhhCc-----cccCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 9999998864311 12234445567889999999987777664 4899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEE
Q 044602 263 GLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYP 312 (674)
Q Consensus 263 gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 312 (674)
|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++
T Consensus 165 ~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 165 ALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDDGRI 213 (213)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 99999999999999999877899999999975 47789999999999974
No 139
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=6.6e-44 Score=441.94 Aligned_cols=221 Identities=27% Similarity=0.377 Sum_probs=187.0
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++|+||+|+|+.. .+++||+|+||+++|||.+||+||||||||||+++|.|++.
T Consensus 1164 g~I~f~nVsF~Y~~~------------------------~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~yd 1219 (1466)
T PTZ00265 1164 GKIEIMDVNFRYISR------------------------PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYD 1219 (1466)
T ss_pred ceEEEEEEEEECCCC------------------------CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCC
Confidence 359999999999631 12469999999999999999999999999999999999775
Q ss_pred CC-----------------------------------------------------CccEEEECCEeCCh----hccccEE
Q 044602 148 DD-----------------------------------------------------VKGNITYNDIPYNP----ALKRRIG 170 (674)
Q Consensus 148 ~~-----------------------------------------------------~~G~I~~~g~~~~~----~~~~~ig 170 (674)
+. .+|+|++||+++.+ .+|+.||
T Consensus 1220 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~ 1299 (1466)
T PTZ00265 1220 LKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFS 1299 (1466)
T ss_pred CccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhcc
Confidence 41 59999999999863 6899999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHH-----HHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHH
Q 044602 171 FVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKY-----ARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIG 245 (674)
Q Consensus 171 yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA 245 (674)
||+|++.||++ |++|||.|+.. +.+.++.. ..+++.++ .|++.+||.||+.+ ..||||||||++||
T Consensus 1300 ~V~Qep~LF~g-TIreNI~~g~~-----~at~eeI~~A~k~A~l~~fI~--~LP~GydT~VGe~G-~~LSGGQkQRIaIA 1370 (1466)
T PTZ00265 1300 IVSQEPMLFNM-SIYENIKFGKE-----DATREDVKRACKFAAIDEFIE--SLPNKYDTNVGPYG-KSLSGGQKQRIAIA 1370 (1466)
T ss_pred EeCCCCccccc-cHHHHHhcCCC-----CCCHHHHHHHHHHcCCHHHHH--hCccccCCccCCCC-CcCCHHHHHHHHHH
Confidence 99999999987 99999999732 22332221 12233443 35889999999765 46999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEecCCchHHHhhcCEEEEEeC----CEEE-EecChh
Q 044602 246 YEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVA-KAGRTVITTIHQPSSRMFHMFDKLLLISE----GYPV-YYGKAR 319 (674)
Q Consensus 246 ~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~~~H~~~~~i~~~~D~v~~L~~----G~iv-~~G~~~ 319 (674)
|||+++|+|||||||||+||+++++.|++.|+++. .+++|+|+++|+++. .+.||+|++|++ |+++ +.|+++
T Consensus 1371 RALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlst--i~~aD~Ivvl~~~~~~G~iv~e~Gth~ 1448 (1466)
T PTZ00265 1371 RALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIAS--IKRSDKIVVFNNPDRTGSFVQAHGTHE 1448 (1466)
T ss_pred HHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHH--HHhCCEEEEEeCCCCCCCEEEEecCHH
Confidence 99999999999999999999999999999999986 358999999999864 678999999999 9955 899999
Q ss_pred HHHH
Q 044602 320 ESME 323 (674)
Q Consensus 320 ~~~~ 323 (674)
|+++
T Consensus 1449 eLl~ 1452 (1466)
T PTZ00265 1449 ELLS 1452 (1466)
T ss_pred HHHh
Confidence 9863
No 140
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-43 Score=362.47 Aligned_cols=220 Identities=28% Similarity=0.446 Sum_probs=186.8
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++++|+ .+.+|+|+||++++||+++|+||||||||||+++|+|++ +
T Consensus 2 ~l~~~~l~~~~~---------------------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~ 53 (255)
T PRK11231 2 TLRTENLTVGYG---------------------------TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLL-T 53 (255)
T ss_pred EEEEEeEEEEEC---------------------------CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCc-C
Confidence 478899998763 246999999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCcccc
Q 044602 149 DVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLP-GNMNRQQKYARVQMILKELGLERCRH 223 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~ 223 (674)
+.+|+|.++|+++.. ..++.++|++|++.+++.+||.||+.++...... ....+.+..++++++++.+||.+..+
T Consensus 54 ~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 133 (255)
T PRK11231 54 PQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLAD 133 (255)
T ss_pred CCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHc
Confidence 569999999998642 3456799999999888889999999886321000 01112334557889999999987777
Q ss_pred ccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCE
Q 044602 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDK 303 (674)
Q Consensus 224 ~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 303 (674)
+.+ ..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||+
T Consensus 134 ~~~-----~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~ 207 (255)
T PRK11231 134 RRL-----TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDH 207 (255)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCE
Confidence 664 489999999999999999999999999999999999999999999999877999999999976 57889999
Q ss_pred EEEEeCCEEEEecChhHHH
Q 044602 304 LLLISEGYPVYYGKARESM 322 (674)
Q Consensus 304 v~~L~~G~iv~~G~~~~~~ 322 (674)
+++|++|+++..|+++++.
T Consensus 208 i~~l~~G~i~~~~~~~~~~ 226 (255)
T PRK11231 208 LVVLANGHVMAQGTPEEVM 226 (255)
T ss_pred EEEEECCeEEEEcCHHHhc
Confidence 9999999999999988763
No 141
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=1.7e-43 Score=407.62 Aligned_cols=266 Identities=25% Similarity=0.414 Sum_probs=207.7
Q ss_pred CCCcccceeeecCCCCcchhHHHHHHHHh------------------hcccccc-ccccCCCcc---cc---CCCCceeE
Q 044602 16 TPSTMGSMQIAAGSNGFGHSIEFMSQAYL------------------RNRYSEI-DIVDESSSI---EK---DRPLPIFL 70 (674)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~-~~~~~~~~~---~~---~~~~~~~l 70 (674)
.++.+|++.+.+|..++|.++++..+... ......+ ++.+...+. .. ....+..+
T Consensus 256 ~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~I 335 (588)
T PRK13657 256 AILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGAIDLGRVKGAV 335 (588)
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCCcCCCCCeE
Confidence 45567888999999999999887654321 0000000 222211110 01 01112359
Q ss_pred EEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCC
Q 044602 71 KFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDV 150 (674)
Q Consensus 71 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~ 150 (674)
+++||+|+|+. .+++|+|+|++++|||.++|+|+||||||||+|+|+|++ ++.
T Consensus 336 ~~~~vsf~y~~--------------------------~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~-~p~ 388 (588)
T PRK13657 336 EFDDVSFSYDN--------------------------SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVF-DPQ 388 (588)
T ss_pred EEEEEEEEeCC--------------------------CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCc-CCC
Confidence 99999998852 135899999999999999999999999999999999987 456
Q ss_pred ccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-------CC
Q 044602 151 KGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG-------LE 219 (674)
Q Consensus 151 ~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~ 219 (674)
+|+|.+||+++++ .+++.|+||+|++.+|++ |++|||.++. + +.+++ ++.++++..+ ++
T Consensus 389 ~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~~Ni~~~~----~-~~~d~----~i~~al~~~~l~~~i~~lp 458 (588)
T PRK13657 389 SGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNR-SIEDNIRVGR----P-DATDE----EMRAAAERAQAHDFIERKP 458 (588)
T ss_pred CCEEEECCEEhhhCCHHHHHhheEEEecCcccccc-cHHHHHhcCC----C-CCCHH----HHHHHHHHhCHHHHHHhCc
Confidence 9999999998863 578899999999999997 9999999862 1 12222 2333334333 46
Q ss_pred ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHh
Q 044602 220 RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFH 299 (674)
Q Consensus 220 ~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~ 299 (674)
+..||.+|+.+ +.||||||||++|||||+++|+|++||||||+||+.++..+.+.|+++. +++|+|++||+++ ..+
T Consensus 459 ~gldt~i~~~g-~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~--~~~ 534 (588)
T PRK13657 459 DGYDTVVGERG-RQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLS--TVR 534 (588)
T ss_pred ccccchhcCCC-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHH--HHH
Confidence 67889888653 5699999999999999999999999999999999999999999999885 4899999999985 467
Q ss_pred hcCEEEEEeCCEEEEecChhHHH
Q 044602 300 MFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 300 ~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.+|+|++|++|++++.|++++++
T Consensus 535 ~~D~ii~l~~G~i~~~g~~~~l~ 557 (588)
T PRK13657 535 NADRILVFDNGRVVESGSFDELV 557 (588)
T ss_pred hCCEEEEEECCEEEEeCCHHHHH
Confidence 89999999999999999999885
No 142
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=3.4e-43 Score=353.48 Aligned_cols=193 Identities=31% Similarity=0.546 Sum_probs=167.0
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----hccccEEEEccCCC-CCCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----ALKRRIGFVTQDDV-LLPQLT 183 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~-l~~~lT 183 (674)
+.+|+|+||++++||+++|+||||||||||+|+|+|.++ +.+|+|.++|+++.. ..++.++|++|++. .++.+|
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t 92 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG-PTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPT 92 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCc
Confidence 469999999999999999999999999999999999874 569999999998742 35678999999974 356789
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 044602 184 VEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSG 263 (674)
Q Consensus 184 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsg 263 (674)
|+||+.+..... .....+..++++++++.+||.+..++.+ ..||||||||++|||||+.+|++|+|||||+|
T Consensus 93 ~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~~ 164 (211)
T cd03225 93 VEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAG 164 (211)
T ss_pred HHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 999998865432 1233444567889999999987777654 48999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCE
Q 044602 264 LDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGY 311 (674)
Q Consensus 264 LD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 311 (674)
||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|+
T Consensus 165 LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 165 LDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDGK 211 (211)
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCC
Confidence 9999999999999999877999999999975 5778899999999985
No 143
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=6.3e-43 Score=362.05 Aligned_cols=207 Identities=26% Similarity=0.370 Sum_probs=181.1
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|. .+.+|+|+||++++||+++|+||||||||||+|+|+|++ +
T Consensus 12 ~l~i~~l~~~~~---------------------------~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~-~ 63 (257)
T PRK11247 12 PLLLNAVSKRYG---------------------------ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLE-T 63 (257)
T ss_pred cEEEEEEEEEEC---------------------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C
Confidence 489999999773 245999999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC
Q 044602 149 DVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGG 228 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 228 (674)
+.+|+|.++|.++. ..++.++|++|++.+++.+||+||+.++.. . ...++++++++.+||.+..++.+
T Consensus 64 p~~G~i~~~g~~~~-~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-------~--~~~~~~~~~l~~~gl~~~~~~~~-- 131 (257)
T PRK11247 64 PSAGELLAGTAPLA-EAREDTRLMFQDARLLPWKKVIDNVGLGLK-------G--QWRDAALQALAAVGLADRANEWP-- 131 (257)
T ss_pred CCCeEEEECCEEHH-HhhCceEEEecCccCCCCCcHHHHHHhccc-------c--hHHHHHHHHHHHcCChhHhcCCh--
Confidence 56999999998764 356789999999999998999999987521 1 12356788999999987777654
Q ss_pred CccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecCCchHHHhhcCEEEEE
Q 044602 229 GFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK-AGRTVITTIHQPSSRMFHMFDKLLLI 307 (674)
Q Consensus 229 ~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L 307 (674)
.+||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++. .+.++||++++|
T Consensus 132 ---~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l 207 (257)
T PRK11247 132 ---AALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLI 207 (257)
T ss_pred ---hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 48999999999999999999999999999999999999999999999865 4899999999976 467889999999
Q ss_pred eCCEEEEecChh
Q 044602 308 SEGYPVYYGKAR 319 (674)
Q Consensus 308 ~~G~iv~~G~~~ 319 (674)
++|++++.|+.+
T Consensus 208 ~~G~i~~~~~~~ 219 (257)
T PRK11247 208 EEGKIGLDLTVD 219 (257)
T ss_pred ECCEEEeecccc
Confidence 999999888654
No 144
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-42 Score=359.88 Aligned_cols=222 Identities=23% Similarity=0.354 Sum_probs=184.2
Q ss_pred ceeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 67 PIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 67 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
|..++++||+++|. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+.
T Consensus 4 ~~~l~~~~l~~~~~---------------------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14242 4 PPKMEARGLSFFYG---------------------------DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMN 56 (253)
T ss_pred CcEEEEeeeEEEEC---------------------------CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34589999999773 145899999999999999999999999999999999975
Q ss_pred C--C--CCccEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHc
Q 044602 147 T--D--DVKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKEL 216 (674)
Q Consensus 147 ~--~--~~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l 216 (674)
. + +.+|+|.++|+++.. .+++.++|++|++.+++. ||+||+.++...+. ....++..++++++++.+
T Consensus 57 ~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~ 133 (253)
T PRK14242 57 DLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPK-SIFENVAYGLRVNG--VKDKAYLAERVERSLRHA 133 (253)
T ss_pred ccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCcC-cHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHc
Confidence 3 2 468999999998742 346789999999988885 99999998754321 112334456788899999
Q ss_pred CCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchH
Q 044602 217 GLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSR 296 (674)
Q Consensus 217 gL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~ 296 (674)
|+.+...+.. +..+++|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. +
T Consensus 134 ~l~~~~~~~~-~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~-~ 210 (253)
T PRK14242 134 ALWDEVKDRL-HESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQ-Q 210 (253)
T ss_pred CCchhhhHHh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHH-H
Confidence 9854221111 123458999999999999999999999999999999999999999999999964 899999999975 4
Q ss_pred HHhhcCEEEEEeCCEEEEecChhHH
Q 044602 297 MFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 297 i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
+.++||++++|++|++++.|+++++
T Consensus 211 ~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 211 AARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred HHHhCCEEEEEECCEEEEeCCHHHH
Confidence 7789999999999999999998876
No 145
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=9.2e-43 Score=362.79 Aligned_cols=227 Identities=24% Similarity=0.381 Sum_probs=187.6
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|+..... . ..+.+.+|+|+|+++++||+++|+||||||||||+++|+|.+ +
T Consensus 2 ~l~~~~l~~~~~~~~~~-----------------~-~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~ 62 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLF-----------------G-AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLE-K 62 (265)
T ss_pred eEEEEeEEEEeccCccc-----------------c-ccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC-C
Confidence 37899999988521000 0 011356999999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEeCCh-------hccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 044602 149 DVKGNITYNDIPYNP-------ALKRRIGFVTQDD--VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE 219 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~-------~~~~~igyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 219 (674)
+.+|+|.++|+++.. ..++.++|++|++ .+++.+||+||+.+..... ......+..++++++++.+||.
T Consensus 63 p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~ 140 (265)
T TIGR02769 63 PAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL--TSLDESEQKARIAELLDMVGLR 140 (265)
T ss_pred CCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCC
Confidence 569999999998742 1456799999996 4677889999998764321 1123344556789999999996
Q ss_pred -ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHH
Q 044602 220 -RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRM 297 (674)
Q Consensus 220 -~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i 297 (674)
+..++.+ .+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+
T Consensus 141 ~~~~~~~~-----~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~ 214 (265)
T TIGR02769 141 SEDADKLP-----RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LV 214 (265)
T ss_pred hhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HH
Confidence 5566654 489999999999999999999999999999999999999999999999875 899999999975 46
Q ss_pred HhhcCEEEEEeCCEEEEecChhHHH
Q 044602 298 FHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 298 ~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.++||++++|++|++++.|+++++.
T Consensus 215 ~~~~d~i~~l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 215 QSFCQRVAVMDKGQIVEECDVAQLL 239 (265)
T ss_pred HHHhcEEEEEeCCEEEEECCHHHHc
Confidence 7789999999999999999998874
No 146
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-42 Score=364.22 Aligned_cols=218 Identities=27% Similarity=0.437 Sum_probs=188.0
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++++|+. ..+++|+|+|+++++||+++|+||||||||||+++|+|.+++
T Consensus 5 ~l~i~~l~~~~~~-------------------------~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p 59 (282)
T PRK13640 5 IVEFKHVSFTYPD-------------------------SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLP 59 (282)
T ss_pred eEEEEEEEEEcCC-------------------------CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCC
Confidence 5899999997741 124589999999999999999999999999999999998854
Q ss_pred CCc---cEEEECCEeCCh----hccccEEEEccCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc
Q 044602 149 DVK---GNITYNDIPYNP----ALKRRIGFVTQDDV-LLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER 220 (674)
Q Consensus 149 ~~~---G~I~~~g~~~~~----~~~~~igyv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 220 (674)
.+ |+|.++|+++.. ..++.+||++|++. +++..||.||+.|..... ..+.++..++++++++.+||.+
T Consensus 60 -~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~ 135 (282)
T PRK13640 60 -DDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLD 135 (282)
T ss_pred -CCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChh
Confidence 34 999999998753 35678999999974 566789999998864332 2345566678899999999987
Q ss_pred cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHh
Q 044602 221 CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFH 299 (674)
Q Consensus 221 ~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~ 299 (674)
..++.+ +.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++.. + .
T Consensus 136 ~~~~~~-----~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~ 208 (282)
T PRK13640 136 YIDSEP-----ANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-N 208 (282)
T ss_pred HhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-H
Confidence 777654 589999999999999999999999999999999999999999999999875 8999999999864 4 5
Q ss_pred hcCEEEEEeCCEEEEecChhHHH
Q 044602 300 MFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 300 ~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.||++++|++|++++.|+++++.
T Consensus 209 ~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 209 MADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred hCCEEEEEECCEEEEeCCHHHHh
Confidence 79999999999999999998874
No 147
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.8e-43 Score=379.67 Aligned_cols=206 Identities=25% Similarity=0.442 Sum_probs=181.2
Q ss_pred ccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----h----ccccEEEEccCCCC
Q 044602 107 DYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----A----LKRRIGFVTQDDVL 178 (674)
Q Consensus 107 ~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~----~~~~igyv~Q~~~l 178 (674)
+...+|+|+||++++||+++|+||||||||||+|+|+|+++ +.+|+|.++|+++.. . .++.+|||+|++.+
T Consensus 39 ~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~-p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l 117 (400)
T PRK10070 39 GLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE-PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFAL 117 (400)
T ss_pred CCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC-CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcC
Confidence 33458999999999999999999999999999999999874 569999999998742 1 13579999999999
Q ss_pred CCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEe
Q 044602 179 LPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLD 258 (674)
Q Consensus 179 ~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLD 258 (674)
++++||+||+.++...+ ....++..++++++++.+||.+..++.+ ++|||||||||+|||||+.+|++||||
T Consensus 118 ~~~~Tv~enl~~~~~~~---~~~~~~~~~~~~e~L~~~gL~~~~~~~~-----~~LSgGq~QRv~LArAL~~~P~iLLLD 189 (400)
T PRK10070 118 MPHMTVLDNTAFGMELA---GINAEERREKALDALRQVGLENYAHSYP-----DELSGGMRQRVGLARALAINPDILLMD 189 (400)
T ss_pred CCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCChhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 99999999999986543 2344555678899999999988777654 589999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 259 EPTSGLDSTSANKLIQVLQKVAK-AGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 259 EPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
|||+|||+.++..+.+.|+++++ .|+|||++||++. ++.++||++++|++|+++..|+++++.
T Consensus 190 EPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 190 EAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQNGEVVQVGTPDEIL 253 (400)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEECCEEEecCCHHHHH
Confidence 99999999999999999999976 4899999999975 578899999999999999999998874
No 148
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-42 Score=361.75 Aligned_cols=223 Identities=24% Similarity=0.355 Sum_probs=185.2
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++||+++|+ .+.+|+|+|+++++||+++|+||||||||||+++|+|..+
T Consensus 18 ~~l~~~nl~~~~~---------------------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 70 (267)
T PRK14235 18 IKMRARDVSVFYG---------------------------EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMND 70 (267)
T ss_pred ceEEEEeEEEEEC---------------------------CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 3689999999773 2459999999999999999999999999999999999875
Q ss_pred C----CCccEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC
Q 044602 148 D----DVKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG 217 (674)
Q Consensus 148 ~----~~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 217 (674)
+ +.+|+|.++|+++.. .+++.++|++|++.+++. ||.||+.++...+.. ...+.+..++++++++.+|
T Consensus 71 ~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~ 148 (267)
T PRK14235 71 TIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAG 148 (267)
T ss_pred cccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcC
Confidence 4 469999999998742 346789999999988886 999999987543210 1123344567889999999
Q ss_pred CCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHH
Q 044602 218 LERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRM 297 (674)
Q Consensus 218 L~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i 297 (674)
|.+...... +..+++||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. .+
T Consensus 149 l~~~~~~~~-~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~ 225 (267)
T PRK14235 149 LWEEVKDRL-HEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QA 225 (267)
T ss_pred CchhhhHHh-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HH
Confidence 964211111 123458999999999999999999999999999999999999999999999975 789999999976 47
Q ss_pred HhhcCEEEEEeCCEEEEecChhHHH
Q 044602 298 FHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 298 ~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.+.||++++|++|++++.|+++++.
T Consensus 226 ~~~~d~v~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14235 226 ARVSQRTAFFHLGNLVEVGDTEKMF 250 (267)
T ss_pred HhhCCEEEEEECCEEEEeCCHHHHH
Confidence 7899999999999999999988763
No 149
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-42 Score=364.02 Aligned_cols=221 Identities=24% Similarity=0.426 Sum_probs=188.1
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++++|+...+ ...+.+|+|+|+++++||+++|+||||||||||+++|+|.+.
T Consensus 4 ~l~~~~l~~~~~~~~~---------------------~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~- 61 (280)
T PRK13633 4 MIKCKNVSYKYESNEE---------------------STEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI- 61 (280)
T ss_pred eEEEeeeEEEcCCCCC---------------------CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-
Confidence 4899999998852110 012569999999999999999999999999999999999874
Q ss_pred CCccEEEECCEeCCh-----hccccEEEEccCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 044602 149 DVKGNITYNDIPYNP-----ALKRRIGFVTQDDV--LLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC 221 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 221 (674)
+.+|+|.++|.++.. ..++.+||++|++. +++ .||.||+.|+.... ...+.+..++++++++.+||.+.
T Consensus 62 ~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~-~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~ 137 (280)
T PRK13633 62 PSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVA-TIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEY 137 (280)
T ss_pred CCCceEEECCEeccccccHHHHhhheEEEecChhhhhcc-ccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhH
Confidence 569999999998742 35678999999974 444 59999999875432 23445556778999999999888
Q ss_pred ccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhh
Q 044602 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHM 300 (674)
Q Consensus 222 ~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~ 300 (674)
.++.+ ++||||||||++|||+|+.+|+++||||||+|||+.++..+.+.|++++++ |+|||++||++.. +..
T Consensus 138 ~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~-~~~- 210 (280)
T PRK13633 138 RRHAP-----HLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEE-AVE- 210 (280)
T ss_pred hhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHH-Hhc-
Confidence 77765 489999999999999999999999999999999999999999999999764 9999999999875 444
Q ss_pred cCEEEEEeCCEEEEecChhHHH
Q 044602 301 FDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 301 ~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
||++++|++|++++.|+++++.
T Consensus 211 ~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 211 ADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred CCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999875
No 150
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.6e-43 Score=362.66 Aligned_cols=221 Identities=26% Similarity=0.415 Sum_probs=187.3
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++|++++|+ .+.+|+|+||++++||+++|+||||||||||+++|+|..
T Consensus 10 ~~l~i~~l~~~~~---------------------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~- 61 (265)
T PRK10575 10 TTFALRNVSFRVP---------------------------GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQ- 61 (265)
T ss_pred ceEEEeeEEEEEC---------------------------CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCC-
Confidence 3589999998773 246999999999999999999999999999999999987
Q ss_pred CCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCccc
Q 044602 148 DDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLP-GNMNRQQKYARVQMILKELGLERCR 222 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~ 222 (674)
++.+|+|.++|+++.. ..++.++|++|++.+++.+||.||+.++...... ....+....++++++++.++|.+..
T Consensus 62 ~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 141 (265)
T PRK10575 62 PPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLA 141 (265)
T ss_pred CCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHh
Confidence 4569999999988642 3567899999998888889999999876321100 0011223346788999999998777
Q ss_pred cccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhc
Q 044602 223 HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMF 301 (674)
Q Consensus 223 ~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~ 301 (674)
++.+ ++||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.|
T Consensus 142 ~~~~-----~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~ 215 (265)
T PRK10575 142 HRLV-----DSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYC 215 (265)
T ss_pred cCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhC
Confidence 7665 489999999999999999999999999999999999999999999999765 899999999975 577899
Q ss_pred CEEEEEeCCEEEEecChhHHH
Q 044602 302 DKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 302 D~v~~L~~G~iv~~G~~~~~~ 322 (674)
|++++|++|++++.|+++++.
T Consensus 216 d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 216 DYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred CEEEEEECCeEEEecCHHHhc
Confidence 999999999999999987763
No 151
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=2.8e-43 Score=354.68 Aligned_cols=199 Identities=28% Similarity=0.524 Sum_probs=167.2
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCC--CCCCHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLL--PQLTVEE 186 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~--~~lTV~e 186 (674)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++. ..++.++|++|++.+. ..+||+|
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~-~~~~~i~~v~q~~~~~~~~~~tv~e 89 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK-PTSGSIRVFGKPLE-KERKRIGYVPQRRSIDRDFPISVRD 89 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCCCEEEECCccHH-HHHhheEEeccccccccCCCCcHHH
Confidence 459999999999999999999999999999999999874 56999999998764 3567899999998763 3379999
Q ss_pred HHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 044602 187 TLVFAAFLRLP-GNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD 265 (674)
Q Consensus 187 ~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD 265 (674)
|+.+....... .....++..++++++++.+|+++..++.+ .+||||||||++|||||+.+|++|+|||||+|||
T Consensus 90 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD 164 (213)
T cd03235 90 VVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI-----GELSGGQQQRVLLARALVQDPDLLLLDEPFAGVD 164 (213)
T ss_pred HHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 99886432110 00112334567889999999987777655 4899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEec
Q 044602 266 STSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYG 316 (674)
Q Consensus 266 ~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 316 (674)
+.++..+.+.|++++++|+|+|++||++. ++.++||++++|++| +++.|
T Consensus 165 ~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 165 PKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999877999999999975 477899999999886 66554
No 152
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-42 Score=371.41 Aligned_cols=228 Identities=20% Similarity=0.323 Sum_probs=186.6
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|+.+ .+...+|+||||+|++||+++|+|+||||||||+++|+|++++
T Consensus 3 ~L~v~~l~~~y~~~-----------------------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~ 59 (330)
T PRK15093 3 LLDIRNLTIEFKTS-----------------------DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKD 59 (330)
T ss_pred eEEEeeeEEEEeCC-----------------------CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCC
Confidence 48999999988532 1224699999999999999999999999999999999998752
Q ss_pred ---CCccEEEECCEeCCh----h---c-cccEEEEccCCC--CCCCCCHHHHHHHHHhhcCCCC---CCHHHHHHHHHHH
Q 044602 149 ---DVKGNITYNDIPYNP----A---L-KRRIGFVTQDDV--LLPQLTVEETLVFAAFLRLPGN---MNRQQKYARVQMI 212 (674)
Q Consensus 149 ---~~~G~I~~~g~~~~~----~---~-~~~igyv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~---~~~~~~~~~v~~~ 212 (674)
+.+|+|.++|+++.. . . ++.++||+|++. +.|.+||.+++.+......... ....+..+++.++
T Consensus 60 ~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (330)
T PRK15093 60 NWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIEL 139 (330)
T ss_pred CCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHH
Confidence 468999999998742 1 1 347999999975 6788999999986432110000 1123445678999
Q ss_pred HHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEec
Q 044602 213 LKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIH 291 (674)
Q Consensus 213 l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H 291 (674)
++.+||.+..+ ..+.++.+|||||||||+|||||+.+|++||+||||+|||+.++.++++.|+++.++ |.|+|++||
T Consensus 140 L~~~gL~~~~~--~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itH 217 (330)
T PRK15093 140 LHRVGIKDHKD--AMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISH 217 (330)
T ss_pred HHHCCCCChHH--HHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 99999975321 112345699999999999999999999999999999999999999999999999875 999999999
Q ss_pred CCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 292 QPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 292 ~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
|+. .+.++||+|++|++|++++.|+++++.
T Consensus 218 dl~-~v~~~~dri~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 218 DLQ-MLSQWADKINVLYCGQTVETAPSKELV 247 (330)
T ss_pred CHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 975 477899999999999999999998774
No 153
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.7e-43 Score=347.82 Aligned_cols=211 Identities=30% Similarity=0.560 Sum_probs=198.3
Q ss_pred ccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHH
Q 044602 107 DYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEE 186 (674)
Q Consensus 107 ~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e 186 (674)
+++.+++|+||+++||++++++|||||||||.+++|.|++. +++|+|.++|.+++...+.+|||.|.+..|++.+||.|
T Consensus 13 g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle-~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~d 91 (300)
T COG4152 13 GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE-PTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVED 91 (300)
T ss_pred CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCC-ccCceEEEcCcchhhhhhhhcccChhhhccCccCcHHH
Confidence 45789999999999999999999999999999999999984 56999999999999888899999999999999999999
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 044602 187 TLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDS 266 (674)
Q Consensus 187 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~ 266 (674)
.|.|.+.++ ++++++.+++++.+|+++++......+| ++||-|++|++.+-.+++++|++++||||+|||||
T Consensus 92 ql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~kI-----k~LSKGnqQKIQfisaviHePeLlILDEPFSGLDP 163 (300)
T COG4152 92 QLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKI-----KELSKGNQQKIQFISAVIHEPELLILDEPFSGLDP 163 (300)
T ss_pred HHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccchH-----HHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCCh
Confidence 999999887 6788999999999999999998887766 58999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHHHHHHh
Q 044602 267 TSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFSS 327 (674)
Q Consensus 267 ~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~ 327 (674)
.+.+.+.+.+.+++++|.|||+++|++. .+.++||++++|++|+.|.+|+.+++.+-|..
T Consensus 164 VN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL~kG~~V~~G~v~~ir~~~Gk 223 (300)
T COG4152 164 VNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLKKGQTVLYGTVEDIRRSFGK 223 (300)
T ss_pred hhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhheecCCceEEeccHHHHHHhcCC
Confidence 9999999999999999999999999976 58999999999999999999999999876643
No 154
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-42 Score=362.49 Aligned_cols=221 Identities=24% Similarity=0.389 Sum_probs=187.6
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++||+++|+ .+.+|+|+||++++||+++|+||||||||||+++|+|.+
T Consensus 6 ~~l~i~~l~~~~~---------------------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~- 57 (265)
T PRK10253 6 ARLRGEQLTLGYG---------------------------KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLM- 57 (265)
T ss_pred cEEEEEEEEEEEC---------------------------CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCC-
Confidence 3589999999774 245899999999999999999999999999999999987
Q ss_pred CCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCccc
Q 044602 148 DDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLP-GNMNRQQKYARVQMILKELGLERCR 222 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~ 222 (674)
++.+|+|.++|+++.. ..++.++|++|++.+++.+||+||+.++.....+ .....+...++++++++.+||.+..
T Consensus 58 ~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 137 (265)
T PRK10253 58 TPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLA 137 (265)
T ss_pred CCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHh
Confidence 4569999999998642 3456799999999999889999999875311100 0001123445788999999998777
Q ss_pred cccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhc
Q 044602 223 HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMF 301 (674)
Q Consensus 223 ~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~ 301 (674)
++.+ +.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++|
T Consensus 138 ~~~~-----~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~ 211 (265)
T PRK10253 138 DQSV-----DTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYA 211 (265)
T ss_pred cCCc-----ccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhC
Confidence 7654 589999999999999999999999999999999999999999999999874 899999999975 478999
Q ss_pred CEEEEEeCCEEEEecChhHHH
Q 044602 302 DKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 302 D~v~~L~~G~iv~~G~~~~~~ 322 (674)
|++++|++|++++.|+++++.
T Consensus 212 d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 212 SHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred CEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999988764
No 155
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=1.2e-42 Score=361.27 Aligned_cols=220 Identities=26% Similarity=0.459 Sum_probs=186.1
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|+ .+.+|+|+||++++||+++|+||||||||||+++|+|...+
T Consensus 4 ~l~~~nl~~~~~---------------------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p 56 (262)
T PRK09984 4 IIRVEKLAKTFN---------------------------QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITG 56 (262)
T ss_pred EEEEeeEEEEeC---------------------------CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 589999998763 24689999999999999999999999999999999998754
Q ss_pred C--CccEEEECCEeCCh---------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCC-----CCCHHHHHHHHHHH
Q 044602 149 D--VKGNITYNDIPYNP---------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPG-----NMNRQQKYARVQMI 212 (674)
Q Consensus 149 ~--~~G~I~~~g~~~~~---------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~-----~~~~~~~~~~v~~~ 212 (674)
. .+|+|.++|.++.. ..++.++|++|++.+++.+||.||+.+......+. ....++..++++++
T Consensus 57 ~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (262)
T PRK09984 57 DKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQA 136 (262)
T ss_pred CCCCceEEEECCEecccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHH
Confidence 3 36999999987631 23567999999999999999999998764211000 01123345678999
Q ss_pred HHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEec
Q 044602 213 LKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIH 291 (674)
Q Consensus 213 l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H 291 (674)
++.+||.+..++.+ .+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||
T Consensus 137 l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH 211 (262)
T PRK09984 137 LTRVGMVHFAHQRV-----STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLH 211 (262)
T ss_pred HHHcCCHHHHhCCc-----cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 99999987777765 489999999999999999999999999999999999999999999999864 899999999
Q ss_pred CCchHHHhhcCEEEEEeCCEEEEecChhHH
Q 044602 292 QPSSRMFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 292 ~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
++. .+.+.||++++|++|++++.|++++.
T Consensus 212 ~~~-~~~~~~d~i~~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 212 QVD-YALRYCERIVALRQGHVFYDGSSQQF 240 (262)
T ss_pred CHH-HHHHhCCEEEEEECCEEEEeCCHHHh
Confidence 975 47789999999999999999998764
No 156
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=1.7e-42 Score=352.58 Aligned_cols=214 Identities=29% Similarity=0.443 Sum_probs=180.8
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++||+++|+.. ...+.+|+|+|+++++||+++|+||||||||||+++|+|++
T Consensus 5 ~~l~~~~l~~~~~~~-----------------------~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~- 60 (228)
T PRK10584 5 NIVEVHHLKKSVGQG-----------------------EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLD- 60 (228)
T ss_pred ceEEEeeeEEEccCC-----------------------CcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC-
Confidence 358999999987421 01135899999999999999999999999999999999987
Q ss_pred CCCccEEEECCEeCCh----h---c-cccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 044602 148 DDVKGNITYNDIPYNP----A---L-KRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE 219 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~----~---~-~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 219 (674)
++.+|+|.++|+++.. . . ++.++|++|++.+++.+||.||+.+....+ .....+..++++++++.++|.
T Consensus 61 ~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~ 137 (228)
T PRK10584 61 DGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLG 137 (228)
T ss_pred CCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCH
Confidence 4569999999998742 1 2 357999999999999999999998865332 123445567789999999998
Q ss_pred ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHH
Q 044602 220 RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMF 298 (674)
Q Consensus 220 ~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~ 298 (674)
+..++.+ ..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++.. +
T Consensus 138 ~~~~~~~-----~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~- 210 (228)
T PRK10584 138 KRLDHLP-----AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQL-A- 210 (228)
T ss_pred hHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-
Confidence 7777655 489999999999999999999999999999999999999999999999764 8999999999863 4
Q ss_pred hhcCEEEEEeCCEEEEe
Q 044602 299 HMFDKLLLISEGYPVYY 315 (674)
Q Consensus 299 ~~~D~v~~L~~G~iv~~ 315 (674)
..+|++++|++|++++.
T Consensus 211 ~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 211 ARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HhCCEEEEEECCEEEec
Confidence 55999999999998753
No 157
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=1.2e-42 Score=360.00 Aligned_cols=206 Identities=28% Similarity=0.457 Sum_probs=176.3
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTV 184 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV 184 (674)
+.+|+|+|+++++||+++|+||||||||||+++|+|.++ +.+|+|.++|+++.. ..++.++|++|++.+++.+||
T Consensus 14 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 92 (256)
T TIGR03873 14 RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR-PDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTV 92 (256)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-CCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCH
Confidence 469999999999999999999999999999999999874 569999999998743 345679999999877788899
Q ss_pred HHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 044602 185 EETLVFAAFLRLP-GNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSG 263 (674)
Q Consensus 185 ~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsg 263 (674)
.||+.++...... ......+..++++++++.+++.+..++.+ ..||||||||++|||||+.+|++++|||||+|
T Consensus 93 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt~~ 167 (256)
T TIGR03873 93 RDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM-----STLSGGERQRVHVARALAQEPKLLLLDEPTNH 167 (256)
T ss_pred HHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCcccc
Confidence 9999885321000 00112233457889999999987777765 48999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHH
Q 044602 264 LDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 264 LD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
||+.++..+.+.|++++++|+|||++||++. .+.++||++++|++|++++.|++++.
T Consensus 168 LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 224 (256)
T TIGR03873 168 LDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDGGRVVAAGPPREV 224 (256)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCEEEecCHHHh
Confidence 9999999999999999877899999999986 47789999999999999999998876
No 158
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=1.8e-43 Score=406.16 Aligned_cols=267 Identities=26% Similarity=0.381 Sum_probs=210.2
Q ss_pred CCcccceeeecCCCCcchhHHHHHHHHh--------hcc----------cccc-ccccCCCccc----cCCCCceeEEEE
Q 044602 17 PSTMGSMQIAAGSNGFGHSIEFMSQAYL--------RNR----------YSEI-DIVDESSSIE----KDRPLPIFLKFE 73 (674)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~----------~~~~-~~~~~~~~~~----~~~~~~~~l~~~ 73 (674)
+..+|++.+.+|..++|.++++...... .+. ...+ ++.+.+++.. ........++++
T Consensus 255 ~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~ 334 (571)
T TIGR02203 255 VLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTRAIERARGDVEFR 334 (571)
T ss_pred HHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCeEEEE
Confidence 4567888899999999999888755421 000 0000 2222111111 011112359999
Q ss_pred eEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccE
Q 044602 74 DVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGN 153 (674)
Q Consensus 74 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~ 153 (674)
||+|+|+. ..+++|+|+|+++++||.++|+|+||||||||+|+|+|+. ++.+|+
T Consensus 335 ~v~f~y~~-------------------------~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~-~~~~G~ 388 (571)
T TIGR02203 335 NVTFRYPG-------------------------RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFY-EPDSGQ 388 (571)
T ss_pred EEEEEcCC-------------------------CCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhcc-CCCCCe
Confidence 99998852 1246999999999999999999999999999999999987 456999
Q ss_pred EEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-------CCccc
Q 044602 154 ITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG-------LERCR 222 (674)
Q Consensus 154 I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~ 222 (674)
|.+||+++++ +++++++||+|++.+|++ |++|||.++.. .+.++ ++++++++.+| |++..
T Consensus 389 I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~----~~~~~----~~i~~~l~~~~l~~~i~~lp~gl 459 (571)
T TIGR02203 389 ILLDGHDLADYTLASLRRQVALVSQDVVLFND-TIANNIAYGRT----EQADR----AEIERALAAAYAQDFVDKLPLGL 459 (571)
T ss_pred EEECCEeHHhcCHHHHHhhceEEccCcccccc-cHHHHHhcCCC----CCCCH----HHHHHHHHHcChHHHHHhCcCcc
Confidence 9999998753 578899999999999998 99999997631 12232 34445555544 35678
Q ss_pred cccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcC
Q 044602 223 HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFD 302 (674)
Q Consensus 223 ~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 302 (674)
||.+|+.+ +.||||||||++||||++++|+|++||||||+||+.+++.+.+.|+++. +++|+|++||+++ ..+.||
T Consensus 460 dt~i~~~g-~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~~--~~~~~D 535 (571)
T TIGR02203 460 DTPIGENG-VLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLS--TIEKAD 535 (571)
T ss_pred cceecCCC-CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhhH--HHHhCC
Confidence 99998764 5799999999999999999999999999999999999999999999885 4799999999985 478899
Q ss_pred EEEEEeCCEEEEecChhHHH
Q 044602 303 KLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 303 ~v~~L~~G~iv~~G~~~~~~ 322 (674)
+|++|++|+++..|++++++
T Consensus 536 ~ii~l~~g~i~~~g~~~~l~ 555 (571)
T TIGR02203 536 RIVVMDDGRIVERGTHNELL 555 (571)
T ss_pred EEEEEeCCEEEeeCCHHHHH
Confidence 99999999999999999885
No 159
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=2.3e-43 Score=413.77 Aligned_cols=268 Identities=25% Similarity=0.411 Sum_probs=209.8
Q ss_pred CCCcccceeeecCCCCcchhHHHHHHHHh--------hccc----------cc-cccccCCCccc--c---CCCCceeEE
Q 044602 16 TPSTMGSMQIAAGSNGFGHSIEFMSQAYL--------RNRY----------SE-IDIVDESSSIE--K---DRPLPIFLK 71 (674)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~----------~~-~~~~~~~~~~~--~---~~~~~~~l~ 71 (674)
-...+|++++.+|.++.|.++++...... .+.. .. .++.+.+++.. . .......++
T Consensus 378 ~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~i~ 457 (694)
T TIGR01846 378 ILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSAGLAALPELRGAIT 457 (694)
T ss_pred HhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCCeEE
Confidence 34567899999999999999887655321 0000 00 02222211111 1 111234699
Q ss_pred EEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 044602 72 FEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVK 151 (674)
Q Consensus 72 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~ 151 (674)
++||+|+|+. +.+.+|+|+|+++++||.+||+|+||||||||+|+|+|++ ++.+
T Consensus 458 ~~~vsf~y~~-------------------------~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~-~p~~ 511 (694)
T TIGR01846 458 FENIRFRYAP-------------------------DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLY-TPQH 511 (694)
T ss_pred EEEEEEEcCC-------------------------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCC
Confidence 9999998852 2246999999999999999999999999999999999987 4569
Q ss_pred cEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-------CCc
Q 044602 152 GNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG-------LER 220 (674)
Q Consensus 152 G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~ 220 (674)
|+|++||+++++ .+|+.++||+|++.+|++ |++|||.++.. +.+.+ .+.++++..+ +++
T Consensus 512 G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~-ti~eNi~~~~~-----~~~~~----~i~~a~~~~~l~~~i~~lp~ 581 (694)
T TIGR01846 512 GQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSR-SIRDNIALCNP-----GAPFE----HVIHAAKLAGAHDFISELPQ 581 (694)
T ss_pred ceEEECCEehhhCCHHHHHHhCeEEccCCeehhh-hHHHHHhcCCC-----CCCHH----HHHHHHHHcChHHHHHhCcC
Confidence 999999999863 578899999999999997 99999987531 12222 2233333332 366
Q ss_pred cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhh
Q 044602 221 CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHM 300 (674)
Q Consensus 221 ~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~ 300 (674)
..||.+|+.+ .+||||||||++|||||+++|+||+||||||+||+.++..+.+.|+++. +++|+|++||+++. .+.
T Consensus 582 gl~t~i~~~g-~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~--~~~ 657 (694)
T TIGR01846 582 GYNTEVGEKG-ANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLST--VRA 657 (694)
T ss_pred ccCcEecCCC-CCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChHH--HHh
Confidence 7899998754 5799999999999999999999999999999999999999999999985 58999999999864 567
Q ss_pred cCEEEEEeCCEEEEecChhHHHH
Q 044602 301 FDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 301 ~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
||+|++|++|++++.|+++++++
T Consensus 658 ~d~ii~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 658 CDRIIVLEKGQIAESGRHEELLA 680 (694)
T ss_pred CCEEEEEeCCEEEEeCCHHHHHH
Confidence 99999999999999999998864
No 160
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=3.8e-43 Score=403.23 Aligned_cols=216 Identities=31% Similarity=0.534 Sum_probs=187.2
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++|+||+|+|+. +.+++|+|+|++++|||.+||+||||||||||+|+|+|..
T Consensus 337 ~~i~~~~v~f~y~~-------------------------~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~- 390 (574)
T PRK11160 337 VSLTLNNVSFTYPD-------------------------QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAW- 390 (574)
T ss_pred CeEEEEEEEEECCC-------------------------CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCC-
Confidence 46999999998852 1246999999999999999999999999999999999977
Q ss_pred CCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC-----
Q 044602 148 DDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL----- 218 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL----- 218 (674)
++.+|+|.+||+++++ .+|+.++||+|++.+|++ |++||+.++.. +.+ ++++.++++..++
T Consensus 391 ~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~~-----~~~----~~~i~~al~~~~l~~~i~ 460 (574)
T PRK11160 391 DPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSA-TLRDNLLLAAP-----NAS----DEALIEVLQQVGLEKLLE 460 (574)
T ss_pred CCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcc-cHHHHhhcCCC-----ccC----HHHHHHHHHHcCCHHHHc
Confidence 5569999999999763 578899999999999997 99999998631 112 2345666777666
Q ss_pred -CccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHH
Q 044602 219 -ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRM 297 (674)
Q Consensus 219 -~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i 297 (674)
++..||.+|+.+ ..||||||||++|||||+++|++|+||||||+||+.++..+.+.|+++. +++|+|+++|+++.
T Consensus 461 ~p~GldT~vge~g-~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~~-- 536 (574)
T PRK11160 461 DDKGLNAWLGEGG-RQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLTG-- 536 (574)
T ss_pred CccccCchhcCCC-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChhH--
Confidence 456789998754 5699999999999999999999999999999999999999999999986 48999999999865
Q ss_pred HhhcCEEEEEeCCEEEEecChhHHHH
Q 044602 298 FHMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 298 ~~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
.+.||+|++|++|++++.|+++|+++
T Consensus 537 ~~~~d~i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 537 LEQFDRICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred HHhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 56799999999999999999999864
No 161
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1e-42 Score=354.69 Aligned_cols=200 Identities=27% Similarity=0.403 Sum_probs=171.8
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-----hccccEEEEccCCCCCCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-----ALKRRIGFVTQDDVLLPQLT 183 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~~l~~~lT 183 (674)
+++|+|+||++++||+++|+||||||||||+++|+|.++ +.+|+|.++|.++.. ..++.++|++|++.+++.+|
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (230)
T TIGR03410 13 SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP-VKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLT 91 (230)
T ss_pred eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCc
Confidence 469999999999999999999999999999999999874 569999999998742 23567999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 044602 184 VEETLVFAAFLRLPGNMNRQQKYARVQMILKELG-LERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTS 262 (674)
Q Consensus 184 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTs 262 (674)
+.||+.++..... .. ..+..+++++.++ +.+..++.+ ++||||||||++|||+|+.+|++++|||||+
T Consensus 92 v~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~illlDEPt~ 160 (230)
T TIGR03410 92 VEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGRRG-----GDLSGGQQQQLAIARALVTRPKLLLLDEPTE 160 (230)
T ss_pred HHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCcc
Confidence 9999998754321 11 1234567777776 455556554 4899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHH
Q 044602 263 GLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 263 gLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
|||+.++..+.+.|++++++ |+|+|++||++. ++.++||++++|++|++++.|+++++
T Consensus 161 ~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 161 GIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999874 899999999975 57778999999999999999998876
No 162
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=1.6e-42 Score=351.79 Aligned_cols=198 Identities=30% Similarity=0.479 Sum_probs=174.2
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETL 188 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l 188 (674)
+.+|+|+||++++||+++|+||||||||||+++|+|.+ ++.+|+|.++|.++...-++.++|++|++.+++.+|++||+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~ 91 (223)
T TIGR03740 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGIL-RPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENL 91 (223)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHH
Confidence 45899999999999999999999999999999999987 45699999999987543235799999999999989999999
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTS 268 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~ 268 (674)
.+...... .. .+++.++++.+||.+..++.+ ..||||||||++||||++.+|++|+|||||+|||+.+
T Consensus 92 ~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~ 159 (223)
T TIGR03740 92 KVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKKA-----KQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIG 159 (223)
T ss_pred HHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhhH-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHH
Confidence 88754321 11 246788999999988777654 4899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhH
Q 044602 269 ANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARE 320 (674)
Q Consensus 269 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 320 (674)
+..+.+.|++++++|+|||++||++. .+.+.||++++|++|++++.|++.+
T Consensus 160 ~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 160 IQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999877999999999976 4778999999999999999998753
No 163
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-42 Score=358.15 Aligned_cols=218 Identities=23% Similarity=0.353 Sum_probs=184.9
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++++|+ .+++|+|+|+++++||+++|+||||||||||+|+|+|+.++
T Consensus 4 ~l~i~~v~~~~~---------------------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~ 56 (258)
T PRK14241 4 RIDVKDLNIYYG---------------------------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEV 56 (258)
T ss_pred cEEEeeEEEEEC---------------------------CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCc
Confidence 478999998773 14589999999999999999999999999999999998753
Q ss_pred ----CCccEEEECCEeCC------hhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC
Q 044602 149 ----DVKGNITYNDIPYN------PALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL 218 (674)
Q Consensus 149 ----~~~G~I~~~g~~~~------~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 218 (674)
+.+|+|.++|+++. ...++.++|++|++.+++.+||+||+.++...+. ...+++..++++++++.+||
T Consensus 57 ~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l 134 (258)
T PRK14241 57 IPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANL 134 (258)
T ss_pred ccCCCcceEEEECCEeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCC
Confidence 26999999998863 1356789999999999999999999998754321 11334455678899999998
Q ss_pred C----ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q 044602 219 E----RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPS 294 (674)
Q Consensus 219 ~----~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 294 (674)
. +..++. +.+|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++.
T Consensus 135 ~~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~ 208 (258)
T PRK14241 135 WNEVKDRLDKP-----GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ 208 (258)
T ss_pred chhhhhHhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH
Confidence 4 233443 458999999999999999999999999999999999999999999999964 799999999975
Q ss_pred hHHHhhcCEEEEEe------CCEEEEecChhHHH
Q 044602 295 SRMFHMFDKLLLIS------EGYPVYYGKARESM 322 (674)
Q Consensus 295 ~~i~~~~D~v~~L~------~G~iv~~G~~~~~~ 322 (674)
++.+.||++++|+ +|++++.|+++++.
T Consensus 209 -~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 209 -QAARVSDQTAFFNLEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred -HHHHhCCEEEEEecccCCCCceEEecCCHHHHH
Confidence 4778999999997 79999999998764
No 164
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-42 Score=358.59 Aligned_cols=218 Identities=24% Similarity=0.390 Sum_probs=184.7
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++|++++|+ .+.+|+|+|+++++||+++|+||||||||||+++|+|+..
T Consensus 12 ~~l~~~~l~~~~~---------------------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 64 (260)
T PRK10744 12 SKIQVRNLNFYYG---------------------------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYE 64 (260)
T ss_pred ceEEEEEEEEEeC---------------------------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 4589999999773 1358999999999999999999999999999999999874
Q ss_pred --C--CCccEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC
Q 044602 148 --D--DVKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG 217 (674)
Q Consensus 148 --~--~~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 217 (674)
+ +.+|+|.++|+++.. .+++.++|++|++.+++ .||+||+.+...... ..+.++..++++++++.++
T Consensus 65 ~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~ 141 (260)
T PRK10744 65 LYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAA 141 (260)
T ss_pred cCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcC
Confidence 2 468999999988731 35678999999998888 799999998753221 1334445567889999999
Q ss_pred CCc----cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCC
Q 044602 218 LER----CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQP 293 (674)
Q Consensus 218 L~~----~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 293 (674)
+.+ ..++. +.+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++
T Consensus 142 l~~~~~~~~~~~-----~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~ 215 (260)
T PRK10744 142 LWNEVKDKLHQS-----GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNM 215 (260)
T ss_pred CChhhHHHHhcC-----CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence 853 23433 458999999999999999999999999999999999999999999999964 78999999997
Q ss_pred chHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 294 SSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 294 ~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
. .+.+++|++++|++|++++.|+++++.
T Consensus 216 ~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 216 Q-QAARCSDYTAFMYLGELIEFGNTDTIF 243 (260)
T ss_pred H-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 5 477899999999999999999988763
No 165
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-42 Score=355.73 Aligned_cols=222 Identities=25% Similarity=0.366 Sum_probs=183.3
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC-
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL- 146 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~- 146 (674)
+.++++|+++.|+ .+++|+|+||++++||+++|+||||||||||+|+|+|..
T Consensus 2 ~~l~~~~~~~~~~---------------------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 54 (250)
T PRK14245 2 VKIDARDVNFWYG---------------------------DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMND 54 (250)
T ss_pred cEEEEEEEEEEEC---------------------------CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhc
Confidence 3588999998763 245899999999999999999999999999999999962
Q ss_pred -CCC--CccEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC
Q 044602 147 -TDD--VKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG 217 (674)
Q Consensus 147 -~~~--~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 217 (674)
.++ .+|+|.++|+++.. ..++.++|++|++.+++ .||.||+.++...+. ....+...+.++++++.+|
T Consensus 55 ~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~ 131 (250)
T PRK14245 55 LIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAA 131 (250)
T ss_pred ccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcC
Confidence 232 48999999998742 34668999999998887 599999998754321 1122334567889999999
Q ss_pred CCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHH
Q 044602 218 LERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRM 297 (674)
Q Consensus 218 L~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i 297 (674)
|.+...+.. +..+.+||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++ +++|||++||++. .+
T Consensus 132 l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~ 208 (250)
T PRK14245 132 LWDEVKDKL-KESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QA 208 (250)
T ss_pred CCcchhhhh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HH
Confidence 864321111 12345899999999999999999999999999999999999999999999995 4899999999976 47
Q ss_pred HhhcCEEEEEeCCEEEEecChhHHH
Q 044602 298 FHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 298 ~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.++||++++|++|++++.|+++++.
T Consensus 209 ~~~~d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 209 ARVSDKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred HhhCCEEEEEECCEEEEECCHHHHh
Confidence 7899999999999999999998874
No 166
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-42 Score=349.40 Aligned_cols=193 Identities=26% Similarity=0.439 Sum_probs=167.7
Q ss_pred eeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHH
Q 044602 114 GITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEETLVFA 191 (674)
Q Consensus 114 ~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e~l~~~ 191 (674)
|+|+++++||+++|+||||||||||+++|+|+. ++.+|+|.++|.++.. ..++.++|++|++.+++.+||+||+.++
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~-~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~ 94 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFE-TPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLG 94 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhcc
Confidence 999999999999999999999999999999987 4569999999998753 2356799999999999999999999876
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 044602 192 AFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANK 271 (674)
Q Consensus 192 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~ 271 (674)
..... . ..++..++++++++.+||.+..++.+ .+||||||||++|||||+.+|++|+|||||+|||+.++..
T Consensus 95 ~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~ 166 (211)
T cd03298 95 LSPGL--K-LTAEDRQAIEVALARVGLAGLEKRLP-----GELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAE 166 (211)
T ss_pred ccccc--C-ccHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 43211 1 12234567889999999987777654 4899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEec
Q 044602 272 LIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYG 316 (674)
Q Consensus 272 i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 316 (674)
+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|
T Consensus 167 l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 167 MLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEECCEEeecC
Confidence 99999999764 899999999975 467889999999999998764
No 167
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-42 Score=355.77 Aligned_cols=209 Identities=26% Similarity=0.367 Sum_probs=174.3
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC--CCCccEEEECCEeCCh----hccccEEEEccCCCCCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT--DDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQL 182 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~--~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~l 182 (674)
+.+|+|+|+++++||+++|+||||||||||+|+|+|... ++.+|+|.++|+++.. ..++.++|++|++.+++ .
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~ 93 (246)
T PRK14269 15 KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-K 93 (246)
T ss_pred EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccc-c
Confidence 458999999999999999999999999999999999864 2579999999998753 35678999999998888 5
Q ss_pred CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 044602 183 TVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTS 262 (674)
Q Consensus 183 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTs 262 (674)
||+||+.++...+... .......++++++++.++|.+...... +..+++||||||||++|||||+.+|++++|||||+
T Consensus 94 tv~eni~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~ 171 (246)
T PRK14269 94 SIYENISYAPKLHGMI-KNKDEEEALVVDCLQKVGLFEEVKDKL-KQNALALSGGQQQRLCIARALAIKPKLLLLDEPTS 171 (246)
T ss_pred cHHHHhhhHHhhcCcc-cChHHHHHHHHHHHHHcCCChhhhHHh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999999875332100 012344556789999999953221111 12345899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 263 GLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 263 gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
|||+.++..+.+.|+++.+ |+|+|++||++. ++.+.+|++++|++|++++.|+++++.
T Consensus 172 ~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 229 (246)
T PRK14269 172 ALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFHLGELIEFGESKEFF 229 (246)
T ss_pred cCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999865 899999999975 477899999999999999999988763
No 168
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-42 Score=363.91 Aligned_cols=221 Identities=24% Similarity=0.406 Sum_probs=184.5
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++++|+.+. ...+.+|+|+||++++||+++|+||||||||||+|+|+|.+ +
T Consensus 6 ~l~i~nl~~~~~~~~----------------------~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~ 62 (289)
T PRK13645 6 DIILDNVSYTYAKKT----------------------PFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLI-I 62 (289)
T ss_pred eEEEEEEEEEeCCCC----------------------ccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC-C
Confidence 489999999884210 00135999999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEeCC---------hhccccEEEEccCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC
Q 044602 149 DVKGNITYNDIPYN---------PALKRRIGFVTQDDV--LLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG 217 (674)
Q Consensus 149 ~~~G~I~~~g~~~~---------~~~~~~igyv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 217 (674)
+.+|+|.++|.++. ..+++.++|++|++. +++ .||+||+.++.... ....++..++++++++.++
T Consensus 63 p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~ 138 (289)
T PRK13645 63 SETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQ 138 (289)
T ss_pred CCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcC
Confidence 56999999998763 134668999999973 455 59999999875322 1234444567888999999
Q ss_pred CC-ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCch
Q 044602 218 LE-RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSS 295 (674)
Q Consensus 218 L~-~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~ 295 (674)
|+ +..++.+ +.||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++.
T Consensus 139 L~~~~~~~~~-----~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~- 212 (289)
T PRK13645 139 LPEDYVKRSP-----FELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD- 212 (289)
T ss_pred CChhHhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-
Confidence 95 5566554 489999999999999999999999999999999999999999999999764 899999999975
Q ss_pred HHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 296 RMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 296 ~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
++.++||++++|++|++++.|+++++.
T Consensus 213 ~~~~~~d~i~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 213 QVLRIADEVIVMHEGKVISIGSPFEIF 239 (289)
T ss_pred HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 478899999999999999999988764
No 169
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-42 Score=360.15 Aligned_cols=219 Identities=24% Similarity=0.428 Sum_probs=187.7
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|+.. ..+.+|+|+|+++++||+++|+|+||||||||+++|+|.. +
T Consensus 4 ~l~~~~l~~~~~~~------------------------~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~-~ 58 (277)
T PRK13642 4 ILEVENLVFKYEKE------------------------SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLF-E 58 (277)
T ss_pred eEEEEEEEEEcCCC------------------------CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-C
Confidence 48999999987421 1235899999999999999999999999999999999988 4
Q ss_pred CCccEEEECCEeCCh----hccccEEEEccCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 044602 149 DVKGNITYNDIPYNP----ALKRRIGFVTQDDV-LLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRH 223 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 223 (674)
+.+|+|.++|+++.. ..++.+||++|++. .++..||.||+.++.... ...+++..++++++++.+||.+..+
T Consensus 59 ~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~ 135 (277)
T PRK13642 59 EFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKT 135 (277)
T ss_pred CCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhh
Confidence 569999999998752 35678999999974 566679999998865422 2234455567899999999987777
Q ss_pred ccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcC
Q 044602 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFD 302 (674)
Q Consensus 224 ~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D 302 (674)
+.+ ..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++.. + ..||
T Consensus 136 ~~~-----~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~-~~~d 208 (277)
T PRK13642 136 REP-----ARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-A-ASSD 208 (277)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-HhCC
Confidence 654 589999999999999999999999999999999999999999999999875 9999999999865 4 4699
Q ss_pred EEEEEeCCEEEEecChhHHH
Q 044602 303 KLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 303 ~v~~L~~G~iv~~G~~~~~~ 322 (674)
++++|++|++++.|+++++.
T Consensus 209 ~i~~l~~G~i~~~g~~~~~~ 228 (277)
T PRK13642 209 RILVMKAGEIIKEAAPSELF 228 (277)
T ss_pred EEEEEECCEEEEeCCHHHHh
Confidence 99999999999999998874
No 170
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-42 Score=355.66 Aligned_cols=212 Identities=32% Similarity=0.512 Sum_probs=181.9
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++++|. .+.+|+|+||++++||+++|+||||||||||+++|+|.. +
T Consensus 3 ~l~~~~l~~~~~---------------------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~ 54 (241)
T PRK14250 3 EIEFKEVSYSSF---------------------------GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLI-D 54 (241)
T ss_pred eEEEEeEEEEeC---------------------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-C
Confidence 478999998763 245899999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccc
Q 044602 149 DVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE-RCRH 223 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~ 223 (674)
+.+|+|.++|.++.. ..++.++|++|++.+++ .||+||+.+....+ . ...++++++++.+||+ +..+
T Consensus 55 p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~ 126 (241)
T PRK14250 55 PTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G----EKNVDVEYYLSIVGLNKEYAT 126 (241)
T ss_pred CCCcEEEECCEEhhhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C----cHHHHHHHHHHHcCCCHHHhh
Confidence 569999999998742 35678999999998887 59999998754321 1 1234678899999996 4455
Q ss_pred ccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcC
Q 044602 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFD 302 (674)
Q Consensus 224 ~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D 302 (674)
+. +..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.++||
T Consensus 127 ~~-----~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d 200 (241)
T PRK14250 127 RD-----VKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGD 200 (241)
T ss_pred CC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCC
Confidence 54 4589999999999999999999999999999999999999999999999874 999999999976 4778999
Q ss_pred EEEEEeCCEEEEecChhHHH
Q 044602 303 KLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 303 ~v~~L~~G~iv~~G~~~~~~ 322 (674)
++++|++|++++.|+++++.
T Consensus 201 ~i~~l~~G~i~~~~~~~~~~ 220 (241)
T PRK14250 201 YTAFLNKGILVEYAKTYDFF 220 (241)
T ss_pred EEEEEeCCEEEEeCCHHHHh
Confidence 99999999999999998763
No 171
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=2.7e-42 Score=353.52 Aligned_cols=204 Identities=31% Similarity=0.480 Sum_probs=179.3
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEE 186 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e 186 (674)
+++|+|+|+++++||+++|+||||||||||+++|+|.+ ++.+|+|.++|.++.. ..++.++|++|++.+++.+|+.|
T Consensus 13 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e 91 (237)
T TIGR00968 13 FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLE-QPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRD 91 (237)
T ss_pred eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHH
Confidence 45999999999999999999999999999999999987 4569999999998753 34568999999999999999999
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 044602 187 TLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDS 266 (674)
Q Consensus 187 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~ 266 (674)
|+.+....+ ........+.++++++.+++.+..++.+ +.|||||+||++|||+|+.+|++++|||||+|||+
T Consensus 92 nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~ 163 (237)
T TIGR00968 92 NIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDRYP-----NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDA 163 (237)
T ss_pred HHHhHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 999875432 1233444567789999999987777654 48999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 267 TSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 267 ~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|+++++.
T Consensus 164 ~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 164 KVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 9999999999998875 899999999975 478899999999999999999988774
No 172
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.6e-42 Score=351.35 Aligned_cols=204 Identities=30% Similarity=0.468 Sum_probs=179.2
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEE 186 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e 186 (674)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.. ..++.++|++|++.+++.+|+.|
T Consensus 13 ~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~-~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~ 91 (232)
T cd03300 13 FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET-PTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFE 91 (232)
T ss_pred eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHH
Confidence 469999999999999999999999999999999999874 468999999998753 23568999999999999999999
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 044602 187 TLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDS 266 (674)
Q Consensus 187 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~ 266 (674)
|+.+....+ ........++++++++.+||.+..++.+ ..||||||||++|||||+.+|++++|||||+|||+
T Consensus 92 nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~ 163 (232)
T cd03300 92 NIAFGLRLK---KLPKAEIKERVAEALDLVQLEGYANRKP-----SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDL 163 (232)
T ss_pred HHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 999875433 1233444567889999999988777654 58999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 267 TSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 267 ~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|++|++++.|+++++.
T Consensus 164 ~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~G~~~~~~~~~~~~ 219 (232)
T cd03300 164 KLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNKGKIQQIGTPEEIY 219 (232)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEecCCHHHHH
Confidence 9999999999999875 899999999975 477899999999999999999887664
No 173
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=2e-42 Score=374.75 Aligned_cols=207 Identities=28% Similarity=0.411 Sum_probs=182.4
Q ss_pred cccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCE----eCC---h-h---cc-ccEEEEc
Q 044602 106 KDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDI----PYN---P-A---LK-RRIGFVT 173 (674)
Q Consensus 106 ~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~----~~~---~-~---~~-~~igyv~ 173 (674)
.+...+|+|+||++++||+++|+||||||||||+++|+|++ ++++|+|+++|+ ++. . . .| ++++||+
T Consensus 34 ~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~-~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 34 TGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLN-PVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred hCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 34567999999999999999999999999999999999987 456999999996 332 1 1 22 5799999
Q ss_pred cCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCC
Q 044602 174 QDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPS 253 (674)
Q Consensus 174 Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~ 253 (674)
|++.++|.+||+||+.++...+ ..++.+..++++++++.+||.+..++.+ .+||||||||++|||||+.+|+
T Consensus 113 Q~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~-----~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 113 QKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKP-----GELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred CCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999986443 2345666678899999999988877765 4899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 254 LLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 254 illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
||||||||+|||+.++..+.+.|+++.++ |+|+|++|||+. ++.+++|+|++|++|+++..|+++++.
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999999875 999999999975 578999999999999999999998874
No 174
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-42 Score=357.74 Aligned_cols=225 Identities=24% Similarity=0.401 Sum_probs=192.3
Q ss_pred EEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC-C
Q 044602 70 LKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT-D 148 (674)
Q Consensus 70 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~-~ 148 (674)
++++||+..+... .+..++++||||++++||++||+|.|||||||+.++|.|+++ +
T Consensus 2 L~v~nL~v~f~~~-----------------------~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~ 58 (316)
T COG0444 2 LEVKNLSVSFPTD-----------------------AGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKP 58 (316)
T ss_pred ceEeeeEEEEecC-----------------------CccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCC
Confidence 6789999888642 123569999999999999999999999999999999999986 3
Q ss_pred ---CCccEEEECCEeCC---h-h---cc-ccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHHH
Q 044602 149 ---DVKGNITYNDIPYN---P-A---LK-RRIGFVTQDD--VLLPQLTVEETLVFAAFLRLPGNM-NRQQKYARVQMILK 214 (674)
Q Consensus 149 ---~~~G~I~~~g~~~~---~-~---~~-~~igyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~-~~~~~~~~v~~~l~ 214 (674)
..+|+|.++|+++. + + +| +.|++||||+ .|-|.+||.+.+.-...... .. .+++..+++.++|+
T Consensus 59 ~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~--~~~~~~ea~~~a~~~L~ 136 (316)
T COG0444 59 NARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHG--KGLSKKEAKERAIELLE 136 (316)
T ss_pred CCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhh--cchhhHHHHHHHHHHHH
Confidence 25799999999763 2 2 22 4799999996 68999999998887665431 22 45667889999999
Q ss_pred HcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecCC
Q 044602 215 ELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK-AGRTVITTIHQP 293 (674)
Q Consensus 215 ~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~ 293 (674)
.+||++-.. +-+.++++|||||||||.||.||+.+|++||.||||++||...+.+|+++|+++++ .|.++|+||||+
T Consensus 137 ~Vgi~~~~~--~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl 214 (316)
T COG0444 137 LVGIPDPER--RLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDL 214 (316)
T ss_pred HcCCCCHHH--HHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 999986421 33467899999999999999999999999999999999999999999999999997 599999999998
Q ss_pred chHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 294 SSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 294 ~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
. .+.++||||+||..|++|+.|+.+++.
T Consensus 215 ~-vva~~aDri~VMYaG~iVE~g~~~~i~ 242 (316)
T COG0444 215 G-VVAEIADRVAVMYAGRIVEEGPVEEIF 242 (316)
T ss_pred H-HHHHhcceEEEEECcEEEEeCCHHHHh
Confidence 6 588999999999999999999999874
No 175
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-42 Score=351.81 Aligned_cols=199 Identities=24% Similarity=0.430 Sum_probs=173.1
Q ss_pred eeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHH
Q 044602 114 GITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEETLVFA 191 (674)
Q Consensus 114 ~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e~l~~~ 191 (674)
|+||++++||+++|+||||||||||+++|+|+. ++.+|+|.++|+++.. ..++.++|++|++.+++.+|+.||+.+.
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 95 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFL-TPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLG 95 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcc
Confidence 899999999999999999999999999999987 4569999999998753 2346799999999999999999999876
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 044602 192 AFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANK 271 (674)
Q Consensus 192 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~ 271 (674)
..... . ..+...++++++++.+||++..++.+ +.||||||||++||||++.+|++++|||||+|||+.++..
T Consensus 96 ~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~ 167 (232)
T PRK10771 96 LNPGL--K-LNAAQREKLHAIARQMGIEDLLARLP-----GQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQE 167 (232)
T ss_pred ccccc--C-CCHHHHHHHHHHHHHcCcHHHHhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 32111 1 12234567899999999988777765 4899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 272 LIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 272 i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+.+.|++++++ |+|+|++||++. ++.+.||++++|++|++++.|+++++.
T Consensus 168 ~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~g~~~~~~ 218 (232)
T PRK10771 168 MLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVADGRIAWDGPTDELL 218 (232)
T ss_pred HHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999998764 899999999975 477889999999999999999988764
No 176
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=3.5e-42 Score=358.85 Aligned_cols=227 Identities=22% Similarity=0.397 Sum_probs=187.6
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|...... -..+.+++|+|+|+++++||+++|+|||||||||||++|+|++ +
T Consensus 4 ~l~~~~l~~~~~~~~~~------------------~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~-~ 64 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGW------------------FRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMI-E 64 (267)
T ss_pred eEEEeceEEEecCCCCc------------------ccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCC-C
Confidence 48999999988521100 0011246999999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEeCCh----hccccEEEEccCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-cc
Q 044602 149 DVKGNITYNDIPYNP----ALKRRIGFVTQDDV--LLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE-RC 221 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~ 221 (674)
+.+|+|.++|.++.. ..++.++|++|++. +++.+||.|++.+...... .....+..++++++++.+||. +.
T Consensus 65 p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~ 142 (267)
T PRK15112 65 PTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDH 142 (267)
T ss_pred CCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHH
Confidence 569999999998752 23457999999974 6788899999988654331 123444556788999999994 55
Q ss_pred ccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhh
Q 044602 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHM 300 (674)
Q Consensus 222 ~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~ 300 (674)
.++.+ .+||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++..+
T Consensus 143 ~~~~~-----~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~ 216 (267)
T PRK15112 143 ASYYP-----HMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHI 216 (267)
T ss_pred HhcCc-----hhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHh
Confidence 55544 489999999999999999999999999999999999999999999999874 899999999975 57788
Q ss_pred cCEEEEEeCCEEEEecChhHHH
Q 044602 301 FDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 301 ~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
||++++|++|++++.|+++++.
T Consensus 217 ~d~i~~l~~G~i~~~~~~~~~~ 238 (267)
T PRK15112 217 SDQVLVMHQGEVVERGSTADVL 238 (267)
T ss_pred cCEEEEEECCEEEecCCHHHHh
Confidence 9999999999999999988764
No 177
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=3.2e-42 Score=347.15 Aligned_cols=197 Identities=24% Similarity=0.427 Sum_probs=170.8
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHH
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEETL 188 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e~l 188 (674)
+++|+|+++++||+++|+||||||||||+|+|+|.. ++.+|+|.++|+++.. ..++.++||+|++.+++.+|+.||+
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~ 91 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFI-EPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNI 91 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHH
Confidence 467999999999999999999999999999999987 4569999999998753 3567899999999999999999999
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTS 268 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~ 268 (674)
.+...... . ...+..++++++++.+||.+..++.+ ++||||||||++|||+|+.+|++++|||||+|||+.+
T Consensus 92 ~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~ 163 (213)
T TIGR01277 92 GLGLHPGL--K-LNAEQQEKVVDAAQQVGIADYLDRLP-----EQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLL 163 (213)
T ss_pred HhHhhccC--C-ccHHHHHHHHHHHHHcCcHHHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHH
Confidence 87643211 1 12233556788999999987777654 5899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecC
Q 044602 269 ANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGK 317 (674)
Q Consensus 269 ~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 317 (674)
+..+.+.|+++.++ |+|||++||++. ++.+.||++++|++|++++.|.
T Consensus 164 ~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 164 REEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEECCeEEEecC
Confidence 99999999999764 899999999975 4678899999999999999875
No 178
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-42 Score=356.01 Aligned_cols=222 Identities=25% Similarity=0.393 Sum_probs=184.4
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++|+++.|+ .+.+|+|+|+++++||+++|+||||||||||+++|+|...
T Consensus 11 ~~l~i~~l~~~~~---------------------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 63 (259)
T PRK14274 11 EVYQINGMNLWYG---------------------------QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQ 63 (259)
T ss_pred ceEEEeeEEEEEC---------------------------CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 3589999999773 2458999999999999999999999999999999999875
Q ss_pred C-C---CccEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC
Q 044602 148 D-D---VKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG 217 (674)
Q Consensus 148 ~-~---~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 217 (674)
+ + ++|+|.++|+++.. ..++.+||++|++.+++. ||+||+.+..... ....+++..++++++++.++
T Consensus 64 ~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~ 140 (259)
T PRK14274 64 MVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIH--GTKNKKKLQEIVEKSLKDVA 140 (259)
T ss_pred CCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcC
Confidence 2 2 58999999998741 346789999999988886 9999998875332 11133444567888999999
Q ss_pred CCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHH
Q 044602 218 LERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRM 297 (674)
Q Consensus 218 L~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i 297 (674)
+.+...... +..+.+||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++||++. .+
T Consensus 141 l~~~~~~~l-~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~ 217 (259)
T PRK14274 141 LWDEVKDRL-HTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QA 217 (259)
T ss_pred Cchhhhhhh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HH
Confidence 854211111 123458999999999999999999999999999999999999999999999965 799999999975 47
Q ss_pred HhhcCEEEEEeCCEEEEecChhHHH
Q 044602 298 FHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 298 ~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.+.||++++|++|+++..|+++++.
T Consensus 218 ~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 218 ARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred HHhCCEEEEEECCEEEEECCHHHHh
Confidence 7899999999999999999998763
No 179
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-42 Score=354.39 Aligned_cols=221 Identities=25% Similarity=0.405 Sum_probs=184.5
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC-
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT- 147 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~- 147 (674)
.++++|++++|+ .+.+|+|+|+++++||+++|+||||||||||+++|+|+++
T Consensus 4 ~l~~~nl~~~~~---------------------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 56 (252)
T PRK14256 4 KVKLEQLNVHFG---------------------------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDL 56 (252)
T ss_pred EEEEEEEEEEeC---------------------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccC
Confidence 378999998774 2458999999999999999999999999999999999874
Q ss_pred -C--CCccEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC
Q 044602 148 -D--DVKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL 218 (674)
Q Consensus 148 -~--~~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 218 (674)
+ +++|+|.++|+++.. .+++.++|++|++.+++.+||+||+.++.... ......+..++++++++.+++
T Consensus 57 ~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l 134 (252)
T PRK14256 57 VPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLN--GRVNRSEADEIVESSLKRVAL 134 (252)
T ss_pred CCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCC
Confidence 2 258999999998731 35678999999999999899999998764332 112333445678899999998
Q ss_pred CccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHH
Q 044602 219 ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMF 298 (674)
Q Consensus 219 ~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~ 298 (674)
.+...... +..+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.
T Consensus 135 ~~~~~~~~-~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~ 211 (252)
T PRK14256 135 WDEVKDRL-KSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAA 211 (252)
T ss_pred chhhhHHh-hCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHH
Confidence 64221111 123458999999999999999999999999999999999999999999999976 689999999975 477
Q ss_pred hhcCEEEEEeCCEEEEecChhHH
Q 044602 299 HMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 299 ~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
++||++++|++|++++.|+++++
T Consensus 212 ~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14256 212 RVSDYTAFFYMGDLVECGETKKI 234 (252)
T ss_pred hhCCEEEEEECCEEEEeCCHHHH
Confidence 89999999999999999998876
No 180
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-42 Score=359.06 Aligned_cols=220 Identities=24% Similarity=0.403 Sum_probs=184.3
Q ss_pred CCceeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHc
Q 044602 65 PLPIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 65 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G 144 (674)
..+..++++||+++|+ .+.+|+|+||++++||+++|+||||||||||+++|+|
T Consensus 9 ~~~~~l~i~nl~~~~~---------------------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 61 (269)
T PRK14259 9 SKNIIISLQNVTISYG---------------------------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNR 61 (269)
T ss_pred CCCceEEEEeEEEEEC---------------------------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3445799999999774 1458999999999999999999999999999999999
Q ss_pred CCCC----CCccEEEECCEeCC------hhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 044602 145 RLTD----DVKGNITYNDIPYN------PALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILK 214 (674)
Q Consensus 145 ~~~~----~~~G~I~~~g~~~~------~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~ 214 (674)
+.++ +++|+|.++|+++. ...++.++|++|++.+++. ||+||+.+.+..+ .... +..++++++++
T Consensus 62 l~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~---~~~~-~~~~~~~~~l~ 136 (269)
T PRK14259 62 MNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARIN---GYTG-DMDELVERSLR 136 (269)
T ss_pred cccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccchh-hHHHHHhhhhhhc---CCcH-HHHHHHHHHHH
Confidence 8753 47999999999863 1356789999999998885 9999999876432 1122 23456778888
Q ss_pred HcCCCc----cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEe
Q 044602 215 ELGLER----CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTI 290 (674)
Q Consensus 215 ~lgL~~----~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~ 290 (674)
.+++.. ..++. +.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++|
T Consensus 137 ~~~l~~~l~~~~~~~-----~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivt 210 (269)
T PRK14259 137 KAAVWDECKDKLNES-----GYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVT 210 (269)
T ss_pred HhCCcchhhhhhCCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEe
Confidence 888743 33433 458999999999999999999999999999999999999999999999965 79999999
Q ss_pred cCCchHHHhhcCEEEEEeC-----------CEEEEecChhHHHH
Q 044602 291 HQPSSRMFHMFDKLLLISE-----------GYPVYYGKARESME 323 (674)
Q Consensus 291 H~~~~~i~~~~D~v~~L~~-----------G~iv~~G~~~~~~~ 323 (674)
|++. ++.++||++++|++ |++++.|+++++.+
T Consensus 211 H~~~-~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 211 HNMQ-QAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKKIFN 253 (269)
T ss_pred CCHH-HHHHhcCEEEEEeccccccccccccceEEEeCCHHHHHh
Confidence 9975 57899999999996 67899999988743
No 181
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5e-42 Score=351.06 Aligned_cols=202 Identities=30% Similarity=0.522 Sum_probs=178.0
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHH
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEETL 188 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e~l 188 (674)
+|+|+|+++++||+++|+||||||||||+++|+|++ ++.+|+|.++|.++.. ..++.++|++|++.+++.+|+.||+
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~-~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l 92 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFI-KPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNI 92 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc-CCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHH
Confidence 799999999999999999999999999999999987 4569999999998753 2356899999999999999999999
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTS 268 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~ 268 (674)
.+..... .....+..+++.++++.+||.+..++.+ +.||||||||++|||||+.+|++++|||||+|||+.+
T Consensus 93 ~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~ 164 (235)
T cd03299 93 AYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRT 164 (235)
T ss_pred HHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCc-----ccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHH
Confidence 8875332 2234455567889999999988777765 4899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 269 ANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 269 ~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+..+.+.|++++++ |+|+|++||++. ++.+.||++++|++|++++.|++++..
T Consensus 165 ~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 218 (235)
T cd03299 165 KEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLNGKLIQVGKPEEVF 218 (235)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 99999999998765 999999999975 477889999999999999999987764
No 182
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.7e-42 Score=356.68 Aligned_cols=222 Identities=29% Similarity=0.374 Sum_probs=186.2
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++||+++|+ .+++|+|+|+++++||+++|+||||||||||+++|+|+++
T Consensus 19 ~~l~~~nl~~~~~---------------------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 71 (267)
T PRK14237 19 IALSTKDLHVYYG---------------------------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMND 71 (267)
T ss_pred eEEEEeeEEEEEC---------------------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 4689999999773 2469999999999999999999999999999999999875
Q ss_pred C----CCccEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC
Q 044602 148 D----DVKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG 217 (674)
Q Consensus 148 ~----~~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 217 (674)
+ +.+|+|.++|+++.. ..++.++|++|++.+++ .||+||+.++.... ....+.+..+++.++++.++
T Consensus 72 ~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~ 148 (267)
T PRK14237 72 TIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAA 148 (267)
T ss_pred ccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcC
Confidence 3 469999999998742 34678999999998888 49999999875332 11234445567888999999
Q ss_pred CCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHH
Q 044602 218 LERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRM 297 (674)
Q Consensus 218 L~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i 297 (674)
|.+..+... +..+++||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++
T Consensus 149 l~~~i~~~~-~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~ 225 (267)
T PRK14237 149 LWDQVKDDL-HKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK-NYTIIIVTHNMQ-QA 225 (267)
T ss_pred CCchhhhhh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HH
Confidence 864322211 234568999999999999999999999999999999999999999999999964 799999999976 47
Q ss_pred HhhcCEEEEEeCCEEEEecChhHHH
Q 044602 298 FHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 298 ~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.++||++++|++|++++.|+++++.
T Consensus 226 ~~~~d~i~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 226 ARASDYTAFFYLGDLIEYDKTRNIF 250 (267)
T ss_pred HHhcCEEEEEECCEEEEeCCHHHHh
Confidence 7899999999999999999998763
No 183
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-42 Score=366.72 Aligned_cols=224 Identities=22% Similarity=0.355 Sum_probs=188.3
Q ss_pred ceeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 67 PIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 67 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+..++++|++++|.. +.+.+|+|+||+|++||++||+||||||||||+++|+|..
T Consensus 78 ~~~i~~~nls~~y~~-------------------------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~ 132 (329)
T PRK14257 78 ANVFEIRNFNFWYMN-------------------------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLN 132 (329)
T ss_pred CceEEEEeeEEEecC-------------------------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 346899999998842 1245899999999999999999999999999999999987
Q ss_pred CC----CCccEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCC-HHHHHHHHHHHHHH
Q 044602 147 TD----DVKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMN-RQQKYARVQMILKE 215 (674)
Q Consensus 147 ~~----~~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~-~~~~~~~v~~~l~~ 215 (674)
.. +.+|+|.+||+++.. .+++.++||+|++.+|+ .|++||+.|+.... ... ++...+.++++++.
T Consensus 133 ~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~ 208 (329)
T PRK14257 133 DLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKS 208 (329)
T ss_pred cccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHH
Confidence 42 458999999999852 45778999999999887 59999999875321 122 22234457888999
Q ss_pred cCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCch
Q 044602 216 LGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSS 295 (674)
Q Consensus 216 lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 295 (674)
++|.+..++.++ +.+..||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++++ ++|+|++||++.
T Consensus 209 ~~L~~~l~~~~~-~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~- 285 (329)
T PRK14257 209 AALWDEVKDDLD-KAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA- 285 (329)
T ss_pred cCCcchhhhhhh-CCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-
Confidence 988655555554 34568999999999999999999999999999999999999999999999876 799999999975
Q ss_pred HHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 296 RMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 296 ~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.+.+.||||++|++|++++.|+++++.
T Consensus 286 ~i~~~~Driivl~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 286 QAQRISDETVFFYQGWIEEAGETKTIF 312 (329)
T ss_pred HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 467789999999999999999999884
No 184
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=2.3e-42 Score=353.82 Aligned_cols=201 Identities=32% Similarity=0.458 Sum_probs=174.1
Q ss_pred cccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh---hccccEEEEc-cCCCCCCC
Q 044602 106 KDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP---ALKRRIGFVT-QDDVLLPQ 181 (674)
Q Consensus 106 ~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~---~~~~~igyv~-Q~~~l~~~ 181 (674)
++.+++|+|+||++++||+++|+||||||||||+++|+|.++ +.+|+|.++|++... ..++.++|++ |++.+++.
T Consensus 31 ~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 31 YREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ-PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred cCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-CCceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 455679999999999999999999999999999999999874 569999999987532 3567899998 55778888
Q ss_pred CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 044602 182 LTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPT 261 (674)
Q Consensus 182 lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPT 261 (674)
+||+||+.+..... ....++..++++++++.+||.+..++.++ .||||||||++||++|+.+|++|+|||||
T Consensus 110 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 110 LPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTPVR-----QLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 99999998875432 12344455677889999999888887654 89999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEec
Q 044602 262 SGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYG 316 (674)
Q Consensus 262 sgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 316 (674)
+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999765 899999999975 577899999999999998765
No 185
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-42 Score=372.38 Aligned_cols=193 Identities=29% Similarity=0.484 Sum_probs=173.3
Q ss_pred eeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--------hccccEEEEccCCCCCCCCCHH
Q 044602 114 GITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--------ALKRRIGFVTQDDVLLPQLTVE 185 (674)
Q Consensus 114 ~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--------~~~~~igyv~Q~~~l~~~lTV~ 185 (674)
|+||++++||+++|+|||||||||||++|+|+++ +.+|+|.++|+++.. ..++.++||+|++.+|+++||+
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~-p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~ 94 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR-PQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVR 94 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHH
Confidence 8999999999999999999999999999999874 569999999988642 2467899999999999999999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 044602 186 ETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD 265 (674)
Q Consensus 186 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD 265 (674)
||+.|+.. ....++++++++.+||.+..++.+ ++|||||||||+|||||+.+|++|+|||||+|||
T Consensus 95 enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD 160 (352)
T PRK11144 95 GNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRYP-----GSLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160 (352)
T ss_pred HHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCC
Confidence 99998642 122456889999999988777765 4899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 266 STSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 266 ~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+.++..+.+.|++++++ |+|+|++||++. ++.++||++++|++|+++..|+++++.
T Consensus 161 ~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~i~ 217 (352)
T PRK11144 161 LPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQGKVKAFGPLEEVW 217 (352)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeCCEEEEecCHHHHH
Confidence 99999999999999875 899999999975 578999999999999999999999874
No 186
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-43 Score=380.41 Aligned_cols=215 Identities=30% Similarity=0.496 Sum_probs=188.3
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+|+|+.+ ..++|+|+||++++||.+||+|+||||||||+++|+|-+ +
T Consensus 336 ~l~~~~vsF~y~~~-------------------------~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~-~ 389 (573)
T COG4987 336 ALELRNVSFTYPGQ-------------------------QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAW-D 389 (573)
T ss_pred eeeeccceeecCCC-------------------------ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhcc-C
Confidence 68999999998742 246999999999999999999999999999999999877 5
Q ss_pred CCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-----
Q 044602 149 DVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE----- 219 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----- 219 (674)
+.+|+|.+||.++.. .+++.+++++|...+|.+ |+++||.++... .+ ++.+.++++++||+
T Consensus 390 ~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~-Tlr~NL~lA~~~-----As----DEel~~aL~qvgL~~l~~~ 459 (573)
T COG4987 390 PQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSG-TLRDNLRLANPD-----AS----DEELWAALQQVGLEKLLES 459 (573)
T ss_pred CCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHH-HHHHHHhhcCCC-----CC----HHHHHHHHHHcCHHHHHHh
Confidence 569999999998752 478899999999999998 999999987421 22 34556667776653
Q ss_pred --ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHH
Q 044602 220 --RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRM 297 (674)
Q Consensus 220 --~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i 297 (674)
+..||.+|+.+ +.||||||||++|||+|++|.++++|||||.|||+.+++++++.|.+.++ |+|+|++||+...
T Consensus 460 ~p~gl~t~lge~G-~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~~-- 535 (573)
T COG4987 460 APDGLNTWLGEGG-RRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLRG-- 535 (573)
T ss_pred ChhhhhchhccCC-CcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEeccccc--
Confidence 46788898765 56999999999999999999999999999999999999999999988765 9999999999875
Q ss_pred HhhcCEEEEEeCCEEEEecChhHHHH
Q 044602 298 FHMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 298 ~~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
.+.||||++|++|+++++|++++++.
T Consensus 536 le~~drIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 536 LERMDRIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred HhhcCEEEEEECCeeeecCCHHhhhc
Confidence 67899999999999999999999875
No 187
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-42 Score=353.77 Aligned_cols=218 Identities=23% Similarity=0.352 Sum_probs=184.0
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++|+++.|+ .+.+|+|+|+++++||+++|+||||||||||+++|+|..+
T Consensus 3 ~~l~~~~l~~~~~---------------------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 55 (251)
T PRK14270 3 IKMESKNLNLWYG---------------------------EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMND 55 (251)
T ss_pred cEEEEEEeEEEEC---------------------------CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 3578999998763 2458999999999999999999999999999999999875
Q ss_pred C----CCccEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC
Q 044602 148 D----DVKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG 217 (674)
Q Consensus 148 ~----~~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 217 (674)
+ +.+|+|.++|.++.. ..++.++|++|++.+++ +|++||+.+...... .....+..++++++++.++
T Consensus 56 ~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~ 132 (251)
T PRK14270 56 LISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAA 132 (251)
T ss_pred cccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcC
Confidence 3 268999999998742 34678999999999888 799999998754321 1123344567788999998
Q ss_pred CCc----cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCC
Q 044602 218 LER----CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQP 293 (674)
Q Consensus 218 L~~----~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 293 (674)
|.+ ..++ .+.+||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||++
T Consensus 133 l~~~~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~ 206 (251)
T PRK14270 133 LWDEVKDDLKK-----SALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNM 206 (251)
T ss_pred CchhhhhHhhC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCH
Confidence 853 2333 3458999999999999999999999999999999999999999999999976 69999999997
Q ss_pred chHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 294 SSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 294 ~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
. ++.++||++++|++|++++.|+++++.
T Consensus 207 ~-~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 207 Q-QASRVSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred H-HHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence 5 578899999999999999999998863
No 188
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-42 Score=391.48 Aligned_cols=220 Identities=23% Similarity=0.384 Sum_probs=189.9
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++++|. ++.+|+|+||++++||+++|+||||||||||+|+|+|+.++
T Consensus 5 ~l~~~nl~~~~~---------------------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~ 57 (506)
T PRK13549 5 LLEMKNITKTFG---------------------------GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPH 57 (506)
T ss_pred eEEEeeeEEEeC---------------------------CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 489999998773 24599999999999999999999999999999999998854
Q ss_pred -CCccEEEECCEeCCh-----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccc
Q 044602 149 -DVKGNITYNDIPYNP-----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCR 222 (674)
Q Consensus 149 -~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 222 (674)
+++|+|.++|.++.. ..++.+|||+|++.+++.+||+||+.++...+.......++..++++++++.+||.+..
T Consensus 58 ~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 137 (506)
T PRK13549 58 GTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINP 137 (506)
T ss_pred CCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCc
Confidence 479999999998742 13567999999999999999999999875322111123344456789999999998877
Q ss_pred cccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcC
Q 044602 223 HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFD 302 (674)
Q Consensus 223 ~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 302 (674)
++.++ +||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||
T Consensus 138 ~~~~~-----~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d 211 (506)
T PRK13549 138 ATPVG-----NLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISD 211 (506)
T ss_pred ccchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcC
Confidence 77654 89999999999999999999999999999999999999999999999878999999999975 4778899
Q ss_pred EEEEEeCCEEEEecChhHH
Q 044602 303 KLLLISEGYPVYYGKARES 321 (674)
Q Consensus 303 ~v~~L~~G~iv~~G~~~~~ 321 (674)
++++|++|++++.|+++++
T Consensus 212 ~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 212 TICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred EEEEEECCEEeeecccccC
Confidence 9999999999999988765
No 189
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.9e-42 Score=343.90 Aligned_cols=194 Identities=37% Similarity=0.651 Sum_probs=166.9
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.+.|+||+|.|+.++ +++.+|+|+||++++||+++|+||||||||||+++|+|+.++
T Consensus 3 ~~~~~~~~~~~~~~~-----------------------~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 59 (202)
T cd03233 3 TLSWRNISFTTGKGR-----------------------SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEG 59 (202)
T ss_pred eEEEEccEEEeccCC-----------------------CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCC
Confidence 478999999997431 235799999999999999999999999999999999998752
Q ss_pred --CCccEEEECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 044602 149 --DVKGNITYNDIPYNP---ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRH 223 (674)
Q Consensus 149 --~~~G~I~~~g~~~~~---~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 223 (674)
+.+|+|.++|+++.. ..++.++|++|++.+++.+||+||+.++.... .+
T Consensus 60 ~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~ 113 (202)
T cd03233 60 NVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GN 113 (202)
T ss_pred CCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cc
Confidence 679999999998753 45678999999999999999999998763210 22
Q ss_pred ccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcC
Q 044602 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFD 302 (674)
Q Consensus 224 ~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D 302 (674)
+. +..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ +.|+|+++|+..+++.+.||
T Consensus 114 ~~-----~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d 188 (202)
T cd03233 114 EF-----VRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFD 188 (202)
T ss_pred cc-----hhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCC
Confidence 22 3589999999999999999999999999999999999999999999999875 67877777765556888999
Q ss_pred EEEEEeCCEEEEec
Q 044602 303 KLLLISEGYPVYYG 316 (674)
Q Consensus 303 ~v~~L~~G~iv~~G 316 (674)
++++|++|++++.|
T Consensus 189 ~i~~l~~G~i~~~g 202 (202)
T cd03233 189 KVLVLYEGRQIYYG 202 (202)
T ss_pred eEEEEECCEEEecC
Confidence 99999999998765
No 190
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7.7e-43 Score=354.24 Aligned_cols=203 Identities=25% Similarity=0.412 Sum_probs=187.0
Q ss_pred cceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-------hc-cccEEEEccCCCCCCC
Q 044602 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-------AL-KRRIGFVTQDDVLLPQ 181 (674)
Q Consensus 110 ~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-------~~-~~~igyv~Q~~~l~~~ 181 (674)
.-++|+|++++.||+..|||-||||||||+++|.++. ++++|+|+++|.++.. ++ |+++++|||...|+|+
T Consensus 42 vGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLi-ept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPh 120 (386)
T COG4175 42 VGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLI-EPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPH 120 (386)
T ss_pred EeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccC-CCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccc
Confidence 3589999999999999999999999999999999766 5679999999998742 23 4579999999999999
Q ss_pred CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 044602 182 LTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPT 261 (674)
Q Consensus 182 lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPT 261 (674)
.||.||..|+...+ +++++++++++.+.|+.+||....+++ +++|||||||||.+||||+.+|+||++|||+
T Consensus 121 rtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~~~~y-----p~eLSGGMqQRVGLARAla~~~~IlLMDEaF 192 (386)
T COG4175 121 RTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYADKY-----PNELSGGMQQRVGLARALANDPDILLMDEAF 192 (386)
T ss_pred hhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhhhhcC-----cccccchHHHHHHHHHHHccCCCEEEecCch
Confidence 99999999998775 578999999999999999999988875 5699999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 262 SGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 262 sgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
|+|||--+.++.+.|.+|.++ ++|||++|||.. |..++.|||.+|++|++|..|+|+|++
T Consensus 193 SALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~rIaimkdG~ivQ~Gtp~eIl 253 (386)
T COG4175 193 SALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGDRIAIMKDGEIVQVGTPEEIL 253 (386)
T ss_pred hhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccceEEEecCCeEEEeCCHHHHH
Confidence 999999999999999998765 899999999975 689999999999999999999999986
No 191
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.3e-42 Score=352.41 Aligned_cols=219 Identities=28% Similarity=0.402 Sum_probs=183.4
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
+.++++||+++|+ .+++|+|+||++++||+++|+||||||||||+|+|+|.++
T Consensus 3 ~~l~~~~l~~~~~---------------------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 55 (252)
T PRK14272 3 LLLSAQDVNIYYG---------------------------DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHD 55 (252)
T ss_pred EEEEEeeeEEEEC---------------------------CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 3578999998773 2458999999999999999999999999999999999875
Q ss_pred CC----CccEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC
Q 044602 148 DD----VKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG 217 (674)
Q Consensus 148 ~~----~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 217 (674)
+. .+|+|.++|+++.. ..++.++|++|++.+++.+|+.||+.++.... ....+++..+.+++.++.++
T Consensus 56 ~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~ 133 (252)
T PRK14272 56 LTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLA--GIRDRDHLMEVAERSLRGAA 133 (252)
T ss_pred CCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcC
Confidence 42 38999999998742 34668999999999999999999998765322 11123334456777788777
Q ss_pred CC----ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCC
Q 044602 218 LE----RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQP 293 (674)
Q Consensus 218 L~----~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 293 (674)
+. +..++. ++.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||++
T Consensus 134 l~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~ 207 (252)
T PRK14272 134 LWDEVKDRLKTP-----ATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNM 207 (252)
T ss_pred cchhhhhhhcCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence 64 233443 458999999999999999999999999999999999999999999999965 79999999997
Q ss_pred chHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 294 SSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 294 ~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
. .+.+.||++++|++|++++.|+++++.
T Consensus 208 ~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 208 H-QAARVSDTTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred H-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 6 477889999999999999999998874
No 192
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.4e-42 Score=353.11 Aligned_cols=208 Identities=28% Similarity=0.419 Sum_probs=173.3
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC--C--CCccEEEECCEeCCh------hccccEEEEccCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT--D--DVKGNITYNDIPYNP------ALKRRIGFVTQDDVL 178 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~--~--~~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l 178 (674)
+++|+|+||++++||+++|+||||||||||+++|+|+.. + +.+|+|.++|+++.. ..++.++|++|++.+
T Consensus 18 ~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 97 (251)
T PRK14244 18 KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNP 97 (251)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCccc
Confidence 468999999999999999999999999999999999864 2 358999999988642 346789999999988
Q ss_pred CCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEe
Q 044602 179 LPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLD 258 (674)
Q Consensus 179 ~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLD 258 (674)
++. ||.||+.+....+. ......+..+.++++++.+||.+...+.+ +..+.+||||||||++|||+|+.+|++|+||
T Consensus 98 ~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~qrv~laral~~~p~llllD 174 (251)
T PRK14244 98 FPK-SIYDNVAYGPKLHG-LAKNKKKLDEIVEKSLTSVGLWEELGDRL-KDSAFELSGGQQQRLCIARAIAVKPTMLLMD 174 (251)
T ss_pred ccC-CHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCCchhhhHh-hcChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 886 99999998743321 11123344456788999999965321111 1234589999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHH
Q 044602 259 EPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 259 EPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
|||+|||+.++..+.+.|+++++ |+|||++||++. .+.+.||++++|++|++++.|+++++
T Consensus 175 EPt~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 175 EPCSALDPVATNVIENLIQELKK-NFTIIVVTHSMK-QAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred CCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999864 899999999976 47788999999999999999998876
No 193
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=3.2e-42 Score=372.64 Aligned_cols=197 Identities=26% Similarity=0.451 Sum_probs=175.3
Q ss_pred eeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--------hccccEEEEccCCCCCCCCCHH
Q 044602 114 GITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--------ALKRRIGFVTQDDVLLPQLTVE 185 (674)
Q Consensus 114 ~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--------~~~~~igyv~Q~~~l~~~lTV~ 185 (674)
|+||++++||+++|+|||||||||||++|+|+.+ +.+|+|.++|+++.. ..++.++||+|++.+|+++||+
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~-p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~ 93 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR-PDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVR 93 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHH
Confidence 9999999999999999999999999999999874 569999999998742 2467899999999999999999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 044602 186 ETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD 265 (674)
Q Consensus 186 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD 265 (674)
||+.|+.... ...+..++++++++.+||.+..++.+ ++|||||||||+|||||+.+|++|+|||||+|||
T Consensus 94 enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD 163 (354)
T TIGR02142 94 GNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLP-----GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALD 163 (354)
T ss_pred HHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCC
Confidence 9999875421 22334567899999999988777765 4899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 266 STSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 266 ~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+.++..+.+.|++++++ |+|+|++||++. ++..+||++++|++|+++..|+++++.
T Consensus 164 ~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 220 (354)
T TIGR02142 164 DPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLEDGRVAAAGPIAEVW 220 (354)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEEECCHHHHh
Confidence 99999999999999875 899999999975 578899999999999999999998874
No 194
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-41 Score=351.74 Aligned_cols=221 Identities=24% Similarity=0.408 Sum_probs=183.9
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|+++.|+ .+.+|+|+||++++||+++|+||||||||||+++|+|+..+
T Consensus 3 ~l~~~~l~~~~~---------------------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~ 55 (250)
T PRK14262 3 IIEIENFSAYYG---------------------------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDH 55 (250)
T ss_pred eEEEEeeEEEeC---------------------------CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccC
Confidence 478999998763 24589999999999999999999999999999999998753
Q ss_pred ----CCccEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC
Q 044602 149 ----DVKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL 218 (674)
Q Consensus 149 ----~~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 218 (674)
+.+|+|.++|.++.. ..++.++|++|++.+++ .||+||+.++..... ...+...++.+++.++.+|+
T Consensus 56 ~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l 132 (250)
T PRK14262 56 IPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAAL 132 (250)
T ss_pred CCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCC
Confidence 368999999988642 34678999999999888 799999998754321 11233445567889999998
Q ss_pred CccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHH
Q 044602 219 ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMF 298 (674)
Q Consensus 219 ~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~ 298 (674)
.+..+.. .+..+.+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||++. .+.
T Consensus 133 ~~~~~~~-~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~ 209 (250)
T PRK14262 133 WDEVKSE-LNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAI 209 (250)
T ss_pred CchhHHH-HhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHH
Confidence 6421111 1233468999999999999999999999999999999999999999999999875 799999999976 477
Q ss_pred hhcCEEEEEeCCEEEEecChhHHH
Q 044602 299 HMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 299 ~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
++||++++|++|+++..|+++++.
T Consensus 210 ~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 210 RIADYIAFMYRGELIEYGPTREIV 233 (250)
T ss_pred HhCCEEEEEECCEEEEecCHHHHH
Confidence 899999999999999999998774
No 195
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-41 Score=351.87 Aligned_cols=221 Identities=28% Similarity=0.419 Sum_probs=182.3
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC-
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT- 147 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~- 147 (674)
.++++||+++|. .+.+|+|+|+++++||+++|+||||||||||+++|+|...
T Consensus 5 ~l~~~~l~~~~~---------------------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 57 (252)
T PRK14239 5 ILQVSDLSVYYN---------------------------KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDL 57 (252)
T ss_pred eEEEEeeEEEEC---------------------------CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccccc
Confidence 489999998773 2458999999999999999999999999999999999753
Q ss_pred CC---CccEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC
Q 044602 148 DD---VKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL 218 (674)
Q Consensus 148 ~~---~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 218 (674)
.+ .+|+|.++|+++.. .+++.++||+|++.+++ +||+||+.++..... ........++++++++.+++
T Consensus 58 ~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l 134 (252)
T PRK14239 58 NPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKG--IKDKQVLDEAVEKSLKGASI 134 (252)
T ss_pred CCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCC
Confidence 23 48999999998731 34678999999998888 799999998754321 11223345667889999987
Q ss_pred CccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHH
Q 044602 219 ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMF 298 (674)
Q Consensus 219 ~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~ 298 (674)
.+...+.. +..+++||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.
T Consensus 135 ~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~ 211 (252)
T PRK14239 135 WDEVKDRL-HDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QAS 211 (252)
T ss_pred chhHHHHH-hcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHH
Confidence 53211111 123458999999999999999999999999999999999999999999999965 699999999975 477
Q ss_pred hhcCEEEEEeCCEEEEecChhHHH
Q 044602 299 HMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 299 ~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+.||++++|++|++++.|+++++.
T Consensus 212 ~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 212 RISDRTGFFLDGDLIEYNDTKQMF 235 (252)
T ss_pred HhCCEEEEEECCEEEEeCCHHHHH
Confidence 899999999999999999998763
No 196
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=1.5e-42 Score=355.08 Aligned_cols=199 Identities=29% Similarity=0.482 Sum_probs=163.5
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTV 184 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV 184 (674)
+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ +.+|+|.++|.++.. .+++.++|++|++.+++ .||
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv 92 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV-PENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFN-RSI 92 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-CCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhcc-chH
Confidence 469999999999999999999999999999999999874 569999999998642 35678999999998876 599
Q ss_pred HHHHHHHHhhcCCCCCCHHHHH-----HHHHHHHHHc--CCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEE
Q 044602 185 EETLVFAAFLRLPGNMNRQQKY-----ARVQMILKEL--GLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLL 257 (674)
Q Consensus 185 ~e~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illL 257 (674)
.||+.+.... ....... ..+.+.++.+ ++.+..+. .+.+|||||||||+|||||+.+|++|+|
T Consensus 93 ~~nl~~~~~~-----~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-----~~~~LSgG~~qrv~laral~~~p~llll 162 (237)
T cd03252 93 RDNIALADPG-----MSMERVIEAAKLAGAHDFISELPEGYDTIVGE-----QGAGLSGGQRQRIAIARALIHNPRILIF 162 (237)
T ss_pred HHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhCcccccchhhc-----CCCcCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 9999875311 1111111 1223445544 34433333 3468999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 258 DEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 258 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
||||+|||+.++..+.+.|+++++ |+|||++||++.. + ..||++++|++|++++.|+++++.
T Consensus 163 DEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~-~-~~~d~v~~l~~G~i~~~~~~~~~~ 224 (237)
T cd03252 163 DEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLST-V-KNADRIIVMEKGRIVEQGSHDELL 224 (237)
T ss_pred eCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHH-H-HhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999974 8999999999864 4 569999999999999999988764
No 197
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=8.9e-43 Score=399.96 Aligned_cols=266 Identities=24% Similarity=0.393 Sum_probs=206.8
Q ss_pred CcccceeeecCCCCcchhHHHHHHHHh--------hcc----------ccc-cccccCCCccc-c---CCCCceeEEEEe
Q 044602 18 STMGSMQIAAGSNGFGHSIEFMSQAYL--------RNR----------YSE-IDIVDESSSIE-K---DRPLPIFLKFED 74 (674)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~----------~~~-~~~~~~~~~~~-~---~~~~~~~l~~~~ 74 (674)
..+|++.+.+|.++.|.++++..+... .+. ... .++.+.+++.. . ....+..++++|
T Consensus 239 l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~I~~~~ 318 (569)
T PRK10789 239 IGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSEPVPEGRGELDVNI 318 (569)
T ss_pred HHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCCCCCCCCcEEEEE
Confidence 456788889999999998887655321 000 000 02222211110 0 111123589999
Q ss_pred EEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEE
Q 044602 75 VEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNI 154 (674)
Q Consensus 75 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I 154 (674)
++|+|+. +++.+|+|+|+++++||.++|+||||||||||+++|+|.+ ++.+|+|
T Consensus 319 v~~~y~~-------------------------~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~-~p~~G~i 372 (569)
T PRK10789 319 RQFTYPQ-------------------------TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHF-DVSEGDI 372 (569)
T ss_pred EEEECCC-------------------------CCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhccc-CCCCCEE
Confidence 9998852 1246899999999999999999999999999999999987 5569999
Q ss_pred EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHc-------CCCcccc
Q 044602 155 TYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKEL-------GLERCRH 223 (674)
Q Consensus 155 ~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~ 223 (674)
.+||+++.+ .+++.++||+|++.+|++ |++||+.++.. ..+++ ++++.++.. .+++..|
T Consensus 373 ~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~-----~~~~~----~~~~~~~~~~l~~~i~~lp~gl~ 442 (569)
T PRK10789 373 RFHDIPLTKLQLDSWRSRLAVVSQTPFLFSD-TVANNIALGRP-----DATQQ----EIEHVARLASVHDDILRLPQGYD 442 (569)
T ss_pred EECCEEHhhCCHHHHHhheEEEccCCeeccc-cHHHHHhcCCC-----CCCHH----HHHHHHHHcCCHHHHHhCcCccc
Confidence 999998753 578899999999999987 99999987631 12222 233334333 3467788
Q ss_pred ccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCE
Q 044602 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDK 303 (674)
Q Consensus 224 ~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 303 (674)
|.+|+.+ ..||||||||++|||||+++|+|++|||||++||+.++..+.+.|+++. +|+|+|++||+++. .+.||+
T Consensus 443 t~~~~~g-~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~~--~~~~d~ 518 (569)
T PRK10789 443 TEVGERG-VMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLSA--LTEASE 518 (569)
T ss_pred ceecCCC-CcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchhH--HHcCCE
Confidence 9988654 5799999999999999999999999999999999999999999999985 58999999999864 567999
Q ss_pred EEEEeCCEEEEecChhHHHH
Q 044602 304 LLLISEGYPVYYGKARESME 323 (674)
Q Consensus 304 v~~L~~G~iv~~G~~~~~~~ 323 (674)
|++|++|++++.|+++++.+
T Consensus 519 i~~l~~G~i~~~g~~~~l~~ 538 (569)
T PRK10789 519 ILVMQHGHIAQRGNHDQLAQ 538 (569)
T ss_pred EEEEeCCEEEEecCHHHHHH
Confidence 99999999999999998853
No 198
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-41 Score=350.91 Aligned_cols=217 Identities=25% Similarity=0.380 Sum_probs=182.7
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||++.|+ .+++|+|+||++++||+++|+||||||||||+++|+|...+
T Consensus 3 ~l~~~~l~~~~~---------------------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~ 55 (250)
T PRK14240 3 KISVKDLDLFYG---------------------------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDL 55 (250)
T ss_pred eEEEEEEEEEEC---------------------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccc
Confidence 478999998773 24589999999999999999999999999999999997642
Q ss_pred -C---CccEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC
Q 044602 149 -D---VKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL 218 (674)
Q Consensus 149 -~---~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 218 (674)
+ .+|+|.++|+++.. ..++.++|++|++.+++ +||+||+.++..... ....++..++++++++.+++
T Consensus 56 ~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l 132 (250)
T PRK14240 56 IPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAAL 132 (250)
T ss_pred cCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCC
Confidence 2 58999999998742 35678999999998888 799999998754321 11233455678888999887
Q ss_pred Cc----cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q 044602 219 ER----CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPS 294 (674)
Q Consensus 219 ~~----~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 294 (674)
.+ ..++. +.+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++.
T Consensus 133 ~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~ 206 (250)
T PRK14240 133 WDEVKDRLKKS-----ALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQ 206 (250)
T ss_pred chhhHHHHhcC-----CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHH
Confidence 53 23433 458999999999999999999999999999999999999999999999964 899999999975
Q ss_pred hHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 295 SRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 295 ~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.+.+.||++++|++|++++.|+++++.
T Consensus 207 -~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 207 -QASRISDKTAFFLNGEIVEFGDTVDLF 233 (250)
T ss_pred -HHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 578899999999999999999988763
No 199
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=6.3e-42 Score=357.43 Aligned_cols=208 Identities=26% Similarity=0.414 Sum_probs=174.7
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC-------CccEEEECCEeCCh----hccccEEEEccCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD-------VKGNITYNDIPYNP----ALKRRIGFVTQDDV 177 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~-------~~G~I~~~g~~~~~----~~~~~igyv~Q~~~ 177 (674)
+.+|+|+||++++||+++|+||||||||||+|+|+|.+++. .+|+|.++|.++.. ..++.++|++|++.
T Consensus 14 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~ 93 (272)
T PRK13547 14 RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQ 93 (272)
T ss_pred EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCC
Confidence 46999999999999999999999999999999999987543 28999999998742 34567999999987
Q ss_pred CCCCCCHHHHHHHHHhhcC-CCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHh-------
Q 044602 178 LLPQLTVEETLVFAAFLRL-PGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEIL------- 249 (674)
Q Consensus 178 l~~~lTV~e~l~~~~~~~~-~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~------- 249 (674)
+++.+||+||+.++..... .......+..++++++++.+||.+..++.+ ..|||||||||+|||+|+
T Consensus 94 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~~~~~~ 168 (272)
T PRK13547 94 PAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDV-----TTLSGGELARVQFARVLAQLWPPHD 168 (272)
T ss_pred CCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhccccccc
Confidence 6666899999988632110 001111234456889999999987766654 489999999999999999
Q ss_pred --hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 250 --VDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 250 --~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.++||++++|++|++++.|+++++.
T Consensus 169 ~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (272)
T PRK13547 169 AAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHADRIAMLADGAIVAHGAPADVL 243 (272)
T ss_pred cCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCeEEEecCHHHHc
Confidence 599999999999999999999999999999876 899999999975 477899999999999999999988763
No 200
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-41 Score=354.26 Aligned_cols=217 Identities=24% Similarity=0.376 Sum_probs=182.0
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC-
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT- 147 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~- 147 (674)
.++++|++++|+ .+.+|+|+|+++++||+++|+||||||||||+|+|+|+..
T Consensus 21 ~l~~~~l~~~~~---------------------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 73 (268)
T PRK14248 21 ILEVKDLSIYYG---------------------------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDL 73 (268)
T ss_pred eEEEEEEEEEeC---------------------------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 589999999773 2459999999999999999999999999999999999753
Q ss_pred -C--CCccEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC
Q 044602 148 -D--DVKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL 218 (674)
Q Consensus 148 -~--~~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 218 (674)
+ +.+|+|.++|+++.. ..++.++|++|++.+++. ||.||+.++..... ........+.+.+.++.+++
T Consensus 74 ~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l 150 (268)
T PRK14248 74 IPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAAL 150 (268)
T ss_pred cCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCC
Confidence 2 469999999998742 346789999999998886 99999998643221 11222334567788888888
Q ss_pred Cc----cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q 044602 219 ER----CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPS 294 (674)
Q Consensus 219 ~~----~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 294 (674)
.+ ..++. +.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++.
T Consensus 151 ~~~~~~~~~~~-----~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~ 224 (268)
T PRK14248 151 WDEVKDRLHSS-----ALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ 224 (268)
T ss_pred CcchHHHHhcC-----cccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH
Confidence 52 23333 458999999999999999999999999999999999999999999999965 789999999975
Q ss_pred hHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 295 SRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 295 ~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
++.++||++++|++|++++.|+++++.
T Consensus 225 -~~~~~~d~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 225 -QALRVSDRTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred -HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 477899999999999999999988763
No 201
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-41 Score=350.68 Aligned_cols=217 Identities=25% Similarity=0.411 Sum_probs=182.2
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++++|+ .+++|+|+|+++++||+++|+||||||||||+|+|+|..++
T Consensus 4 ~l~~~~l~~~~~---------------------------~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 56 (251)
T PRK14251 4 IISAKDVHLSYG---------------------------NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDD 56 (251)
T ss_pred eEEEEeeEEEEC---------------------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccc
Confidence 489999999773 14589999999999999999999999999999999998752
Q ss_pred ----CCccEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC
Q 044602 149 ----DVKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL 218 (674)
Q Consensus 149 ----~~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 218 (674)
+.+|+|.++|+++.. ..++.++|++|++.+++ .||+||+.++.... ....++...++++++++.+++
T Consensus 57 ~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l 133 (251)
T PRK14251 57 IENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIA--GVKDKELIDQRVEESLKQAAI 133 (251)
T ss_pred ccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHcCC
Confidence 369999999998631 34678999999998887 69999998865322 111223344567889999998
Q ss_pred Cc----cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q 044602 219 ER----CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPS 294 (674)
Q Consensus 219 ~~----~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 294 (674)
.. ..++. +.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|+++++ ++|||++||++.
T Consensus 134 ~~~~~~~~~~~-----~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~ 207 (251)
T PRK14251 134 WKETKDNLDRN-----AQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ 207 (251)
T ss_pred CcchHHHhccC-----hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH
Confidence 52 23433 458999999999999999999999999999999999999999999999864 799999999976
Q ss_pred hHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 295 SRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 295 ~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.+.+.||++++|++|+++..|+++++.
T Consensus 208 -~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 208 -QAGRISDQTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred -HHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence 477889999999999999999988763
No 202
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=2.8e-42 Score=396.77 Aligned_cols=216 Identities=29% Similarity=0.448 Sum_probs=183.8
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++||+|+|+.. +++.+|+|+|++++|||.++|+||||||||||+|+|+|.+
T Consensus 336 ~~i~~~~v~f~y~~~------------------------~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~- 390 (576)
T TIGR02204 336 GEIEFEQVNFAYPAR------------------------PDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFY- 390 (576)
T ss_pred ceEEEEEEEEECCCC------------------------CCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhcc-
Confidence 358999999988521 1256999999999999999999999999999999999987
Q ss_pred CCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC-----
Q 044602 148 DDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL----- 218 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL----- 218 (674)
++.+|+|.+||.++++ .+++.++|++|++.+|++ |++|||.++.. ..++ +++.+.++..|+
T Consensus 391 ~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~-Ti~~Ni~~~~~-----~~~~----~~~~~~l~~~~l~~~i~ 460 (576)
T TIGR02204 391 DPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAA-SVMENIRYGRP-----DATD----EEVEAAARAAHAHEFIS 460 (576)
T ss_pred CCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccc-cHHHHHhcCCC-----CCCH----HHHHHHHHHcCcHHHHH
Confidence 4569999999998753 577899999999999998 99999988631 1222 334455555443
Q ss_pred --CccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchH
Q 044602 219 --ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSR 296 (674)
Q Consensus 219 --~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~ 296 (674)
++..|+.+|+.+ ..||||||||++||||++++|++|+||||||+||+.+++.+.+.|+++. +++|+|++||+++
T Consensus 461 ~l~~gl~t~i~~~g-~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~-- 536 (576)
T TIGR02204 461 ALPEGYDTYLGERG-VTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLA-- 536 (576)
T ss_pred hCCCCCCceeCCCC-CcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchH--
Confidence 456788888654 5799999999999999999999999999999999999999999999985 4899999999985
Q ss_pred HHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 297 MFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 297 i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
..+.+|+|++|++|++++.|+++++.
T Consensus 537 ~~~~~d~vi~l~~g~~~~~g~~~~l~ 562 (576)
T TIGR02204 537 TVLKADRIVVMDQGRIVAQGTHAELI 562 (576)
T ss_pred HHHhCCEEEEEECCEEEeeecHHHHH
Confidence 36789999999999999999999874
No 203
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=1.6e-41 Score=351.98 Aligned_cols=218 Identities=24% Similarity=0.357 Sum_probs=182.6
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++++|+ .+.+|+|+||++++||+++|+||||||||||+|+|+|.+ +
T Consensus 6 ~l~~~~l~~~~~---------------------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~ 57 (258)
T PRK11701 6 LLSVRGLTKLYG---------------------------PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARL-A 57 (258)
T ss_pred eEEEeeeEEEcC---------------------------CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCC-C
Confidence 489999998763 145899999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEe-----CCh----h----ccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 044602 149 DVKGNITYNDIP-----YNP----A----LKRRIGFVTQDD--VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMIL 213 (674)
Q Consensus 149 ~~~G~I~~~g~~-----~~~----~----~~~~igyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l 213 (674)
+.+|+|.++|++ +.. . .++.++|++|++ .+++.+|+.||+.+...... .....+..+++++++
T Consensus 58 p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l 135 (258)
T PRK11701 58 PDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWL 135 (258)
T ss_pred CCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHH
Confidence 569999999987 532 1 245799999997 46777899999976532211 112233456788999
Q ss_pred HHcCCCc-cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEec
Q 044602 214 KELGLER-CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIH 291 (674)
Q Consensus 214 ~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H 291 (674)
+.+++.+ ..++.+ ..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||
T Consensus 136 ~~~~l~~~~~~~~~-----~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH 210 (258)
T PRK11701 136 ERVEIDAARIDDLP-----TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTH 210 (258)
T ss_pred HHcCCChhHHhCCC-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Confidence 9999964 555544 589999999999999999999999999999999999999999999998765 899999999
Q ss_pred CCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 292 QPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 292 ~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
++. .+.+.||++++|++|++++.|+++++.
T Consensus 211 ~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 211 DLA-VARLLAHRLLVMKQGRVVESGLTDQVL 240 (258)
T ss_pred CHH-HHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 975 466789999999999999999988763
No 204
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=5.4e-42 Score=349.73 Aligned_cols=201 Identities=28% Similarity=0.454 Sum_probs=172.7
Q ss_pred eeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHH
Q 044602 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFA 191 (674)
Q Consensus 112 L~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~ 191 (674)
|+|+|+++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|+++... ....+|++|++.+++.+||.||+.+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~-~~~~~~v~q~~~l~~~~tv~e~l~~~ 78 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ-PTSGGVILEGKQITEP-GPDRMVVFQNYSLLPWLTVRENIALA 78 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEECCCC-ChhheEEecCcccCCCCCHHHHHHHH
Confidence 579999999999999999999999999999999874 5699999999987531 22358999999999999999999886
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 044602 192 AFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANK 271 (674)
Q Consensus 192 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~ 271 (674)
.....+ ...+.+..++++++++.+||.+..++.+ .+||||||||++|||+|+.+|++|||||||+|||+.++..
T Consensus 79 ~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~ 152 (230)
T TIGR01184 79 VDRVLP-DLSKSERRAIVEEHIALVGLTEAADKRP-----GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGN 152 (230)
T ss_pred HHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHH
Confidence 421111 2334455567889999999988777765 4899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHH
Q 044602 272 LIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 272 i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|+..++
T Consensus 153 l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 153 LQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCcEecccCceec
Confidence 99999999775 899999999975 47889999999999999998866543
No 205
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-41 Score=352.97 Aligned_cols=222 Identities=27% Similarity=0.384 Sum_probs=184.6
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++|++++|. .+.+|+|+||++++||+++|+||||||||||+++|+|++.
T Consensus 24 ~~l~~~nl~~~~~---------------------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~ 76 (272)
T PRK14236 24 TALEVRNLNLFYG---------------------------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMND 76 (272)
T ss_pred cEEEEEEEEEEEC---------------------------CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3589999999773 1458999999999999999999999999999999999875
Q ss_pred C----CCccEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC
Q 044602 148 D----DVKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG 217 (674)
Q Consensus 148 ~----~~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 217 (674)
+ +.+|+|.++|.++.. .+++.++|++|++.+++. ||+||+.+..... ....+....++++++++.++
T Consensus 77 ~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~ 153 (272)
T PRK14236 77 LVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQ--GINNRRVLDEAVERSLRGAA 153 (272)
T ss_pred CccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcC
Confidence 3 469999999998742 356789999999999986 9999998875432 11123334466888999998
Q ss_pred CCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHH
Q 044602 218 LERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRM 297 (674)
Q Consensus 218 L~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i 297 (674)
+.+...+.. +..+.+||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++||++. ++
T Consensus 154 l~~~~~~~~-~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~ 230 (272)
T PRK14236 154 LWDEVKDRL-HENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QA 230 (272)
T ss_pred CChhHHHHh-hCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HH
Confidence 864211111 123458999999999999999999999999999999999999999999999976 799999999975 47
Q ss_pred HhhcCEEEEEeCCEEEEecChhHHH
Q 044602 298 FHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 298 ~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.+.||++++|++|++++.|+++++.
T Consensus 231 ~~~~d~i~~l~~G~i~~~g~~~~~~ 255 (272)
T PRK14236 231 ARVSDYTAFMYMGKLVEYGDTDTLF 255 (272)
T ss_pred HhhCCEEEEEECCEEEecCCHHHHh
Confidence 7899999999999999999988763
No 206
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=1.8e-41 Score=351.01 Aligned_cols=217 Identities=22% Similarity=0.360 Sum_probs=181.5
Q ss_pred ceeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 67 PIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 67 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
|..++++||+++|+ +.+|+|+|+++++||+++|+||||||||||+++|+|+.
T Consensus 2 ~~~l~~~~l~~~~~----------------------------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 53 (254)
T PRK10418 2 PQQIELRNIALQAA----------------------------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGIL 53 (254)
T ss_pred CcEEEEeCeEEEec----------------------------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999998661 35899999999999999999999999999999999987
Q ss_pred CC---CCccEEEECCEeCCh-h-ccccEEEEccCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 044602 147 TD---DVKGNITYNDIPYNP-A-LKRRIGFVTQDDV--LLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE 219 (674)
Q Consensus 147 ~~---~~~G~I~~~g~~~~~-~-~~~~igyv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 219 (674)
++ +++|+|.++|+++.. . .++.++||+|++. +.+.+|+.+++.+.+... .... ..++++++++.++|.
T Consensus 54 ~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~l~~~~l~ 128 (254)
T PRK10418 54 PAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLAL---GKPA--DDATLTAALEAVGLE 128 (254)
T ss_pred CCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccccHHHHHHHHHHHc---CCCh--HHHHHHHHHHHcCCC
Confidence 54 169999999998753 2 2357999999974 456679999987654321 1112 235788999999997
Q ss_pred c---cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCch
Q 044602 220 R---CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSS 295 (674)
Q Consensus 220 ~---~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~ 295 (674)
+ ..++. +.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++.
T Consensus 129 ~~~~~~~~~-----~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~- 202 (254)
T PRK10418 129 NAARVLKLY-----PFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG- 202 (254)
T ss_pred ChhhhhhcC-----CcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-
Confidence 6 34444 4589999999999999999999999999999999999999999999999764 899999999976
Q ss_pred HHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 296 RMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 296 ~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
++.++||++++|++|++++.|+++++.
T Consensus 203 ~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 203 VVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 467889999999999999999988763
No 207
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-41 Score=349.47 Aligned_cols=220 Identities=24% Similarity=0.366 Sum_probs=182.0
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|+++.|+ .+.+|+|+||++++||+++|+||||||||||+++|+|..++
T Consensus 3 ~l~~~~l~~~~~---------------------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 55 (249)
T PRK14253 3 KFNIENLDLFYG---------------------------ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDL 55 (249)
T ss_pred eEEEeccEEEEC---------------------------CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhccc
Confidence 478899998763 24589999999999999999999999999999999998754
Q ss_pred ----CCccEEEECCEeCCh-----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 044602 149 ----DVKGNITYNDIPYNP-----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE 219 (674)
Q Consensus 149 ----~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 219 (674)
+.+|+|.++|.++.. ..++.++|++|++.+++ .||.||+.++.... ....+....+++.+.++.+++.
T Consensus 56 ~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~ 132 (249)
T PRK14253 56 IEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQ--GIKDKKVLDEVVERSLRGAALW 132 (249)
T ss_pred ccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhc--CCCchHHHHHHHHHHHHHcCCc
Confidence 358999999988731 35678999999999888 79999998875322 1112334456678888888875
Q ss_pred ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHh
Q 044602 220 RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFH 299 (674)
Q Consensus 220 ~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~ 299 (674)
+...... +..+.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+
T Consensus 133 ~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~ 209 (249)
T PRK14253 133 DEVKDRL-KSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARR 209 (249)
T ss_pred hhhhHHh-hcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHH
Confidence 4221111 123458999999999999999999999999999999999999999999999976 699999999975 5788
Q ss_pred hcCEEEEEeCCEEEEecChhHH
Q 044602 300 MFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 300 ~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
.||++++|++|++++.|+++++
T Consensus 210 ~~d~i~~l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 210 ISDRTAFFLMGELVEHDDTQVI 231 (249)
T ss_pred hCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999998775
No 208
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=4e-42 Score=395.50 Aligned_cols=269 Identities=23% Similarity=0.352 Sum_probs=205.1
Q ss_pred CCCcccceeeecCCCCcchhHHHHHHHHh--------hcc----------ccc-cccccCCCcc---cc---CCCCceeE
Q 044602 16 TPSTMGSMQIAAGSNGFGHSIEFMSQAYL--------RNR----------YSE-IDIVDESSSI---EK---DRPLPIFL 70 (674)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~----------~~~-~~~~~~~~~~---~~---~~~~~~~l 70 (674)
-+..+|++.+.+|+.+.|.++++..+... .+. ... .++.+.+++. .. .......+
T Consensus 256 ~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~i 335 (585)
T TIGR01192 256 CILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADAPELPNVKGAV 335 (585)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCccCCCCCCCCCeE
Confidence 34557888899999999998887644321 000 000 0222221110 00 01112359
Q ss_pred EEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCC
Q 044602 71 KFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDV 150 (674)
Q Consensus 71 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~ 150 (674)
+++||+|+|+. .+++|+|+|+++++||.++|+||||||||||+++|+|.. ++.
T Consensus 336 ~~~~v~~~y~~--------------------------~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~-~~~ 388 (585)
T TIGR01192 336 EFRHITFEFAN--------------------------SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVY-DPT 388 (585)
T ss_pred EEEEEEEECCC--------------------------CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCC-CCC
Confidence 99999998742 135899999999999999999999999999999999987 556
Q ss_pred ccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHH-----HHHHHHcCCCcc
Q 044602 151 KGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARV-----QMILKELGLERC 221 (674)
Q Consensus 151 ~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v-----~~~l~~lgL~~~ 221 (674)
+|+|.+||.++.+ .+++.++||+|++.+|+. |++||+.++.. ..++++..+.. ++.+. .+++.
T Consensus 389 ~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~-----~~~~~~~~~a~~~~~~~~~i~--~l~~g 460 (585)
T TIGR01192 389 VGQILIDGIDINTVTRESLRKSIATVFQDAGLFNR-SIRENIRLGRE-----GATDEEVYEAAKAAAAHDFIL--KRSNG 460 (585)
T ss_pred CCEEEECCEEhhhCCHHHHHhheEEEccCCccCcc-cHHHHHhcCCC-----CCCHHHHHHHHHHhCcHHHHH--hcccc
Confidence 9999999998753 578899999999999986 99999988631 12332222211 12222 24566
Q ss_pred ccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhc
Q 044602 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMF 301 (674)
Q Consensus 222 ~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~ 301 (674)
.|+.+|+. ...||||||||++|||||+++|++|+||||||+||+.+++.+.+.|+++. +++|+|++||+++. .+.|
T Consensus 461 ~~t~~~~~-~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~~--~~~~ 536 (585)
T TIGR01192 461 YDTLVGER-GNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLST--VRNA 536 (585)
T ss_pred ccchhcCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChHH--HHcC
Confidence 78888764 45799999999999999999999999999999999999999999999885 48999999999854 4679
Q ss_pred CEEEEEeCCEEEEecChhHHHH
Q 044602 302 DKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 302 D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
|+|++|++|++++.|+++++.+
T Consensus 537 d~i~~l~~G~i~~~g~~~~l~~ 558 (585)
T TIGR01192 537 DLVLFLDQGRLIEKGSFQELIQ 558 (585)
T ss_pred CEEEEEECCEEEEECCHHHHHH
Confidence 9999999999999999998854
No 209
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=9e-42 Score=386.07 Aligned_cols=219 Identities=24% Similarity=0.445 Sum_probs=188.6
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++++|. ++++|+|+||++++||+++|+||||||||||+|+|+|.++
T Consensus 4 ~i~~~~l~~~~~---------------------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~- 55 (501)
T PRK10762 4 LLQLKGIDKAFP---------------------------GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT- 55 (501)
T ss_pred eEEEeeeEEEeC---------------------------CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC-
Confidence 489999998773 2469999999999999999999999999999999999874
Q ss_pred CCccEEEECCEeCCh----h-ccccEEEEccCCCCCCCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCccc
Q 044602 149 DVKGNITYNDIPYNP----A-LKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLP-GNMNRQQKYARVQMILKELGLERCR 222 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~----~-~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~ 222 (674)
+.+|+|.++|.++.. . .++.++||+|++.+++.+||+||+.++...... .....++..++++++++.+||.+..
T Consensus 56 p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 135 (501)
T PRK10762 56 RDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSS 135 (501)
T ss_pred CCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCc
Confidence 469999999998742 1 356799999999999999999999986432110 1123344456788999999998887
Q ss_pred cccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcC
Q 044602 223 HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFD 302 (674)
Q Consensus 223 ~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 302 (674)
++.++ +|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++|||+. ++.++||
T Consensus 136 ~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d 209 (501)
T PRK10762 136 DKLVG-----ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICD 209 (501)
T ss_pred cCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCC
Confidence 77654 89999999999999999999999999999999999999999999999877999999999975 5778999
Q ss_pred EEEEEeCCEEEEecChhHH
Q 044602 303 KLLLISEGYPVYYGKARES 321 (674)
Q Consensus 303 ~v~~L~~G~iv~~G~~~~~ 321 (674)
++++|++|+++..|+++++
T Consensus 210 ~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 210 DVTVFRDGQFIAEREVADL 228 (501)
T ss_pred EEEEEeCCEEEEecCcCcC
Confidence 9999999999999987654
No 210
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-41 Score=351.13 Aligned_cols=217 Identities=24% Similarity=0.380 Sum_probs=183.2
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++++|+ .+.+|+|+|+++++||+++|+|+||||||||+|+|+|.+++
T Consensus 7 ~l~~~~l~~~~~---------------------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~ 59 (259)
T PRK14260 7 AIKVKDLSFYYN---------------------------TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISEL 59 (259)
T ss_pred eEEEEEEEEEEC---------------------------CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 488999998773 14589999999999999999999999999999999998753
Q ss_pred --C--CccEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC
Q 044602 149 --D--VKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL 218 (674)
Q Consensus 149 --~--~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 218 (674)
+ ++|+|.++|+++.. .+++.++|++|++.+++ +||+||+.++...+. ...+.+..++++++++.+|+
T Consensus 60 ~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l 136 (259)
T PRK14260 60 EGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAAL 136 (259)
T ss_pred ccCCccceEEEECCEeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCC
Confidence 2 48999999998631 34668999999999888 799999988754321 12333445667888999988
Q ss_pred Cc----cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q 044602 219 ER----CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPS 294 (674)
Q Consensus 219 ~~----~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 294 (674)
.+ ..++ .+.+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++.
T Consensus 137 ~~~l~~~~~~-----~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~ 210 (259)
T PRK14260 137 WQEVKDKLNK-----SALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ 210 (259)
T ss_pred cchhhhHhcC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH
Confidence 43 3333 3468999999999999999999999999999999999999999999999875 699999999976
Q ss_pred hHHHhhcCEEEEEe-----CCEEEEecChhHHH
Q 044602 295 SRMFHMFDKLLLIS-----EGYPVYYGKARESM 322 (674)
Q Consensus 295 ~~i~~~~D~v~~L~-----~G~iv~~G~~~~~~ 322 (674)
++.++||++++|+ +|++++.|+++++.
T Consensus 211 -~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~ 242 (259)
T PRK14260 211 -QATRVSDFTAFFSTDESRIGQMVEFGVTTQIF 242 (259)
T ss_pred -HHHHhcCeEEEEeccCCCCceEEEeCCHHHHh
Confidence 5788999999998 59999999999873
No 211
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.7e-42 Score=331.42 Aligned_cols=205 Identities=27% Similarity=0.497 Sum_probs=176.8
Q ss_pred cccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCC
Q 044602 108 YKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLT 183 (674)
Q Consensus 108 ~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lT 183 (674)
.+++|++||++++|||++||+||||||||||||.|+|.+.+ .+|++.+||.+.+. ++.+.-+.++|+..+-...|
T Consensus 13 Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p-~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFt 91 (259)
T COG4559 13 GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSP-DSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFT 91 (259)
T ss_pred cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCC-CCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceE
Confidence 47799999999999999999999999999999999998844 59999999999863 46677899999976633359
Q ss_pred HHHHHHHHHhhcCCCCCCH--HHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhh------CCCEE
Q 044602 184 VEETLVFAAFLRLPGNMNR--QQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILV------DPSLL 255 (674)
Q Consensus 184 V~e~l~~~~~~~~~~~~~~--~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~------~P~il 255 (674)
|.|-+.++.. |....+ .+..+.+++.|+..++.+.+.+.. ..|||||||||.+||.|+. ++++|
T Consensus 92 v~eVV~mGr~---p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y-----~~LSGGEqQRVqlARvLaQl~~~v~~~r~L 163 (259)
T COG4559 92 VQEVVQMGRI---PHRSGREPEEDERIAAQALAATDLSGLAGRDY-----RTLSGGEQQRVQLARVLAQLWPPVPSGRWL 163 (259)
T ss_pred HHHHHHhccc---ccccCCCchhhHHHHHHHHHHcChhhhhccch-----hhcCchHHHHHHHHHHHHHccCCCCCCceE
Confidence 9999999853 332212 244556789999999988776643 4899999999999999986 34699
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 256 LLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 256 lLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+||||||+||...+..++++.++++++|..|+++.||.+- ...+||||++|++||++..|+|++++
T Consensus 164 ~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~~Grv~a~g~p~~vl 229 (259)
T COG4559 164 FLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLHQGRVIASGSPQDVL 229 (259)
T ss_pred EecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeeeCCeEeecCCHHHhc
Confidence 9999999999999999999999999999999999999874 67899999999999999999999875
No 212
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-41 Score=353.32 Aligned_cols=221 Identities=24% Similarity=0.359 Sum_probs=185.7
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|+ .+.+|+|+||++++||+++|+||||||||||+++|+|+.++
T Consensus 21 ~l~i~nl~~~~~---------------------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p 73 (276)
T PRK14271 21 AMAAVNLTLGFA---------------------------GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDK 73 (276)
T ss_pred EEEEeeEEEEEC---------------------------CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCc
Confidence 589999999874 24689999999999999999999999999999999998754
Q ss_pred ----CCccEEEECCEeCCh-----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 044602 149 ----DVKGNITYNDIPYNP-----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE 219 (674)
Q Consensus 149 ----~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 219 (674)
+.+|+|.++|.++.. .+++.++|++|++.+++ .||+||+.++.... ...+..+..+.+.++++.++|.
T Consensus 74 ~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~ 150 (276)
T PRK14271 74 VSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH--KLVPRKEFRGVAQARLTEVGLW 150 (276)
T ss_pred CCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCCC
Confidence 369999999988742 35678999999998888 69999998864322 1123444445678889999987
Q ss_pred ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHh
Q 044602 220 RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFH 299 (674)
Q Consensus 220 ~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~ 299 (674)
+..++.. +..+.+||||||||++|||+|+.+|++|+|||||+|||+.+++.+.+.|+++++ ++|||++||++. ++.+
T Consensus 151 ~~~~~~l-~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~ 227 (276)
T PRK14271 151 DAVKDRL-SDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAAR 227 (276)
T ss_pred chhhhHh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHH
Confidence 5332211 123458999999999999999999999999999999999999999999999976 589999999975 5788
Q ss_pred hcCEEEEEeCCEEEEecChhHHH
Q 044602 300 MFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 300 ~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+||++++|++|++++.|+++++.
T Consensus 228 ~~dri~~l~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 228 ISDRAALFFDGRLVEEGPTEQLF 250 (276)
T ss_pred hCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999998874
No 213
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-41 Score=352.67 Aligned_cols=218 Identities=25% Similarity=0.415 Sum_probs=181.5
Q ss_pred ceeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 67 PIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 67 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+..++++|++++|+ .+.+|+|+|+++++||+++|+|+||||||||+++|+|.+
T Consensus 22 ~~~l~~~~l~~~~~---------------------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 74 (271)
T PRK14238 22 KVVFDTQNLNLWYG---------------------------EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMV 74 (271)
T ss_pred ceEEEEeeeEEEEC---------------------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34689999999774 145899999999999999999999999999999999987
Q ss_pred C--C--CCccEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHc
Q 044602 147 T--D--DVKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKEL 216 (674)
Q Consensus 147 ~--~--~~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l 216 (674)
+ + +.+|+|.++|+++.. .+++.++|++|++.+++. ||+||+.++.... ....+...++.+.+.++.+
T Consensus 75 ~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~ 151 (271)
T PRK14238 75 ELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIH--GIKDKKTLDEIVEKSLRGA 151 (271)
T ss_pred cCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCccccc-cHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHc
Confidence 5 2 479999999998731 346789999999988885 9999999875432 1112223345567778777
Q ss_pred CCC----ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecC
Q 044602 217 GLE----RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQ 292 (674)
Q Consensus 217 gL~----~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~ 292 (674)
++. +..++ .+.+||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|+
T Consensus 152 ~~~~~l~~~~~~-----~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~ 225 (271)
T PRK14238 152 AIWDELKDRLHD-----NAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHN 225 (271)
T ss_pred CCcchHHHHHhc-----CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcC
Confidence 543 23333 3458999999999999999999999999999999999999999999999976 7999999999
Q ss_pred CchHHHhhcCEEEEEeCCEEEEecChhHH
Q 044602 293 PSSRMFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 293 ~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
+. .+.++||++++|++|++++.|+++++
T Consensus 226 ~~-~i~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 226 MQ-QAARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred HH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 75 47789999999999999999998876
No 214
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-41 Score=349.98 Aligned_cols=222 Identities=23% Similarity=0.371 Sum_probs=184.5
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++++|. .+.+|+|+||++++||+++|+||||||||||+++|+|..++
T Consensus 7 ~l~~~nl~~~~~---------------------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~ 59 (261)
T PRK14258 7 AIKVNNLSFYYD---------------------------TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNEL 59 (261)
T ss_pred eEEEeeEEEEeC---------------------------CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCC
Confidence 489999999773 13589999999999999999999999999999999998754
Q ss_pred C----CccEEEECCEeCC------hhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC
Q 044602 149 D----VKGNITYNDIPYN------PALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL 218 (674)
Q Consensus 149 ~----~~G~I~~~g~~~~------~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 218 (674)
. .+|+|.++|+++. ...++.++|++|++.+++ +|+.||+.+...... .....+..+++.++++.+++
T Consensus 60 ~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l 136 (261)
T PRK14258 60 ESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADL 136 (261)
T ss_pred CCCccccceEEECCEEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCC
Confidence 2 3799999998863 134678999999988888 799999988753321 11233445678899999988
Q ss_pred CccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecCCchHH
Q 044602 219 ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK-AGRTVITTIHQPSSRM 297 (674)
Q Consensus 219 ~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i 297 (674)
.+..+... +..+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||++. ++
T Consensus 137 ~~~~~~~~-~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i 214 (261)
T PRK14258 137 WDEIKHKI-HKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QV 214 (261)
T ss_pred cchhhhHh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HH
Confidence 54322111 123458999999999999999999999999999999999999999999999875 4899999999975 57
Q ss_pred HhhcCEEEEEeC-----CEEEEecChhHHH
Q 044602 298 FHMFDKLLLISE-----GYPVYYGKARESM 322 (674)
Q Consensus 298 ~~~~D~v~~L~~-----G~iv~~G~~~~~~ 322 (674)
.++||++++|++ |++++.|+++++.
T Consensus 215 ~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~ 244 (261)
T PRK14258 215 SRLSDFTAFFKGNENRIGQLVEFGLTKKIF 244 (261)
T ss_pred HHhcCEEEEEccCCCcCceEEEeCCHHHHH
Confidence 889999999999 9999999999874
No 215
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-41 Score=385.40 Aligned_cols=219 Identities=26% Similarity=0.467 Sum_probs=188.2
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++++|. .+.+|+|+||++++||+++|+||||||||||+|+|+|..+
T Consensus 5 ~l~~~~l~~~~~---------------------------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~- 56 (510)
T PRK09700 5 YISMAGIGKSFG---------------------------PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE- 56 (510)
T ss_pred eEEEeeeEEEcC---------------------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC-
Confidence 489999998763 2459999999999999999999999999999999999874
Q ss_pred CCccEEEECCEeCCh-----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcC-CCC---CCHHHHHHHHHHHHHHcCCC
Q 044602 149 DVKGNITYNDIPYNP-----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRL-PGN---MNRQQKYARVQMILKELGLE 219 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~-~~~---~~~~~~~~~v~~~l~~lgL~ 219 (674)
+.+|+|.++|+++.. ..++.++||+|++.+++.+||+||+.++..... ... ...++..++++++++.+||.
T Consensus 57 p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 136 (510)
T PRK09700 57 PTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLK 136 (510)
T ss_pred CCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCC
Confidence 569999999998742 134579999999999999999999987642110 001 12334456789999999998
Q ss_pred ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHh
Q 044602 220 RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFH 299 (674)
Q Consensus 220 ~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~ 299 (674)
+..+++++ +|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+..
T Consensus 137 ~~~~~~~~-----~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~ 210 (510)
T PRK09700 137 VDLDEKVA-----NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRR 210 (510)
T ss_pred CCcccchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHH
Confidence 87777664 89999999999999999999999999999999999999999999999888999999999975 4778
Q ss_pred hcCEEEEEeCCEEEEecChhHH
Q 044602 300 MFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 300 ~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
+||++++|++|++++.|+++++
T Consensus 211 ~~d~v~~l~~G~i~~~g~~~~~ 232 (510)
T PRK09700 211 ICDRYTVMKDGSSVCSGMVSDV 232 (510)
T ss_pred hCCEEEEEECCEEeeecchhhC
Confidence 9999999999999999998765
No 216
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-41 Score=347.86 Aligned_cols=220 Identities=23% Similarity=0.337 Sum_probs=181.4
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.++
T Consensus 4 ~l~~~~l~~~~~---------------------------~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~ 56 (251)
T PRK14249 4 KIKIRGVNFFYH---------------------------KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDI 56 (251)
T ss_pred eEEEEEEEEEEC---------------------------CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCc
Confidence 378999998763 24589999999999999999999999999999999998754
Q ss_pred C----CccEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC
Q 044602 149 D----VKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL 218 (674)
Q Consensus 149 ~----~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 218 (674)
. .+|+|.++|.++.. .+++.++|++|++.+++. ||+||+.+....+. ...+++..+.++++++.++|
T Consensus 57 ~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l 133 (251)
T PRK14249 57 VSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLG--TTAQSRLDEVVEKSLRQAAL 133 (251)
T ss_pred cccCCcccEEEECCEEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcC--CChhhHHHHHHHHHHHHhCC
Confidence 3 26999999988641 356789999999998886 99999998754321 11122334567778888887
Q ss_pred CccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHH
Q 044602 219 ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMF 298 (674)
Q Consensus 219 ~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~ 298 (674)
.+..... .+..+.+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++. +++|||++||++. .+.
T Consensus 134 ~~~l~~~-~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~ 210 (251)
T PRK14249 134 WDEVKDN-LHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAA 210 (251)
T ss_pred chhhhhH-hhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHH
Confidence 5422111 123356899999999999999999999999999999999999999999999985 5899999999975 477
Q ss_pred hhcCEEEEEeCCEEEEecChhHH
Q 044602 299 HMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 299 ~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
+.||++++|++|++++.|+++++
T Consensus 211 ~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 211 RASDWTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred hhCCEEEEEeCCeEEEeCCHHHH
Confidence 88999999999999999998876
No 217
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.6e-42 Score=322.55 Aligned_cols=196 Identities=32% Similarity=0.496 Sum_probs=174.0
Q ss_pred cccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-------hcc-ccEEEEccCCCCC
Q 044602 108 YKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-------ALK-RRIGFVTQDDVLL 179 (674)
Q Consensus 108 ~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-------~~~-~~igyv~Q~~~l~ 179 (674)
...||++|++.|++||.+||+|||||||||||-+++|+. .+++|+|.+.|+++.. .+| +++|+|||...+.
T Consensus 22 ~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd-~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Li 100 (228)
T COG4181 22 ELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLD-DPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLI 100 (228)
T ss_pred ceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCC-CCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeecc
Confidence 457999999999999999999999999999999999976 4569999999998752 233 5899999999999
Q ss_pred CCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeC
Q 044602 180 PQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDE 259 (674)
Q Consensus 180 ~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDE 259 (674)
|+||..||+...+.++-. +..+....+.+.|+.+||.+..+.. |.+|||||+|||+||||++..|+|||.||
T Consensus 101 p~ltAlENV~lPleL~ge---~~~~~~~~A~~lL~~vGLg~Rl~Hy-----P~qLSGGEQQRVAiARAfa~~P~vLfADE 172 (228)
T COG4181 101 PNLTALENVALPLELRGE---SSADSRAGAKALLEAVGLGKRLTHY-----PAQLSGGEQQRVALARAFAGRPDVLFADE 172 (228)
T ss_pred ccchhhhhccchhhhcCC---ccccHHHHHHHHHHHhCcccccccC-----ccccCchHHHHHHHHHHhcCCCCEEeccC
Confidence 999999999998877631 3445566788999999999877764 56999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecCCchHHHhhcCEEEEEeCCEEEE
Q 044602 260 PTSGLDSTSANKLIQVLQKVAK-AGRTVITTIHQPSSRMFHMFDKLLLISEGYPVY 314 (674)
Q Consensus 260 PTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 314 (674)
||.+||..+..+|.++|-.+.+ .|.|.|++||||. +..-|||.+-|.+|+++.
T Consensus 173 PTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 173 PTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRSGRLVE 226 (228)
T ss_pred CCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeeecceecc
Confidence 9999999999999999998876 4999999999985 567799999999999975
No 218
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-41 Score=336.07 Aligned_cols=188 Identities=45% Similarity=0.803 Sum_probs=165.1
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC-
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT- 147 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~- 147 (674)
.++++|+++.|+.. .+.+++|+|+|+++++||+++|+||||||||||+++|+|+..
T Consensus 3 ~l~~~~l~~~~~~~-----------------------~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~ 59 (192)
T cd03232 3 VLTWKNLNYTVPVK-----------------------GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTA 59 (192)
T ss_pred EEEEeeeEEEecCC-----------------------CCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 47899999988521 012468999999999999999999999999999999999753
Q ss_pred CCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc
Q 044602 148 DDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVG 227 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 227 (674)
++.+|+|.++|+++....++.++|++|++.+++.+||+||+.++... +
T Consensus 60 ~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-------------------~------------- 107 (192)
T cd03232 60 GVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALL-------------------R------------- 107 (192)
T ss_pred CCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHHH-------------------h-------------
Confidence 45799999999987655667899999999999999999999875310 0
Q ss_pred CCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEE
Q 044602 228 GGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLI 307 (674)
Q Consensus 228 ~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L 307 (674)
+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||++..++.+.||++++|
T Consensus 108 -----~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l 182 (192)
T cd03232 108 -----GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLL 182 (192)
T ss_pred -----cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEE
Confidence 599999999999999999999999999999999999999999999998779999999999864467889999999
Q ss_pred eC-CEEEEec
Q 044602 308 SE-GYPVYYG 316 (674)
Q Consensus 308 ~~-G~iv~~G 316 (674)
++ |++++.|
T Consensus 183 ~~~g~i~~~g 192 (192)
T cd03232 183 KRGGKTVYFG 192 (192)
T ss_pred cCCCeEEeCC
Confidence 98 9999876
No 219
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-41 Score=353.02 Aligned_cols=216 Identities=24% Similarity=0.389 Sum_probs=182.4
Q ss_pred ceeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 67 PIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 67 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+..++++||+++|. .+.+|+|+||++++||+++|+||||||||||+++|+|++
T Consensus 37 ~~~l~i~~l~~~~~---------------------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 89 (285)
T PRK14254 37 ETVIEARDLNVFYG---------------------------DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMN 89 (285)
T ss_pred CceEEEEEEEEEEC---------------------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34689999999773 145999999999999999999999999999999999987
Q ss_pred CC----CCccEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHc
Q 044602 147 TD----DVKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKEL 216 (674)
Q Consensus 147 ~~----~~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l 216 (674)
.+ +.+|+|.++|+++.. ..++.++|++|++.+++. ||.||+.+....+. ... +..++++++++.+
T Consensus 90 ~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~ 164 (285)
T PRK14254 90 DLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRA 164 (285)
T ss_pred CcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHc
Confidence 53 569999999988631 356789999999988886 99999998754321 122 3345788999999
Q ss_pred CCCc----cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecC
Q 044602 217 GLER----CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQ 292 (674)
Q Consensus 217 gL~~----~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~ 292 (674)
||.+ ..++. +.+||||||||++|||||+.+|+||||||||+|||+.++..+.+.|+++++ ++|||++||+
T Consensus 165 ~l~~~i~~~~~~~-----~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~ 238 (285)
T PRK14254 165 ALWDEVKDQLDSS-----GLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHN 238 (285)
T ss_pred CCCchhHHHHhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCC
Confidence 9853 33443 458999999999999999999999999999999999999999999999976 4899999999
Q ss_pred CchHHHhhcCEEE-EEeCCEEEEecChhHH
Q 044602 293 PSSRMFHMFDKLL-LISEGYPVYYGKARES 321 (674)
Q Consensus 293 ~~~~i~~~~D~v~-~L~~G~iv~~G~~~~~ 321 (674)
+. .+.++|||++ +|++|++++.|+++++
T Consensus 239 ~~-~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 239 MQ-QAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred HH-HHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 75 5778899975 6799999999998876
No 220
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-41 Score=353.07 Aligned_cols=218 Identities=22% Similarity=0.347 Sum_probs=182.6
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++||+++|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+..
T Consensus 38 ~~l~~~~l~~~~~---------------------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~ 90 (286)
T PRK14275 38 PHVVAKNFSIYYG---------------------------EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMND 90 (286)
T ss_pred eEEEEeeeEEEEC---------------------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 3589999998773 1358999999999999999999999999999999999753
Q ss_pred --C--CCccEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC
Q 044602 148 --D--DVKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG 217 (674)
Q Consensus 148 --~--~~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 217 (674)
+ +.+|+|.++|+++.. ..++.++|++|++.+++. ||.||+.++..... ..+.....+++.++++.+|
T Consensus 91 ~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~ 167 (286)
T PRK14275 91 LIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHG--INDKKQLEEIVEKSLRKAA 167 (286)
T ss_pred cCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHhC
Confidence 3 379999999988632 246789999999988886 99999998754321 1122334456788899888
Q ss_pred CC----ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCC
Q 044602 218 LE----RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQP 293 (674)
Q Consensus 218 L~----~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 293 (674)
+. +..++. +..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++
T Consensus 168 l~~~l~~~~~~~-----~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~ 241 (286)
T PRK14275 168 LWDEVSDRLDKN-----ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNM 241 (286)
T ss_pred CccchhhHhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence 74 333443 458999999999999999999999999999999999999999999999875 68999999997
Q ss_pred chHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 294 SSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 294 ~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
. ++.++||++++|++|+++..|+++++.
T Consensus 242 ~-~~~~~~d~i~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 242 Q-QASRVSDYTMFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred H-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 5 467899999999999999999988763
No 221
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.5e-42 Score=349.17 Aligned_cols=200 Identities=32% Similarity=0.477 Sum_probs=165.7
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTV 184 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV 184 (674)
+.+|+|+||++++||+++|+||||||||||+++|+|+.+ +.+|+|.++|+++.. ..++.++|++|++.+++ .||
T Consensus 15 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv 92 (234)
T cd03251 15 PPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD-VDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-DTV 92 (234)
T ss_pred ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc-CCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-ccH
Confidence 368999999999999999999999999999999999874 569999999988642 35678999999998887 599
Q ss_pred HHHHHHHHhhcCCCCCCHHHHH-----HHHHHHHHHc--CCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEE
Q 044602 185 EETLVFAAFLRLPGNMNRQQKY-----ARVQMILKEL--GLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLL 257 (674)
Q Consensus 185 ~e~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illL 257 (674)
+||+.+.... ....+.. ..+++.++.+ ++.+..+.. +..||||||||++|||||+.+|++++|
T Consensus 93 ~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~lllL 162 (234)
T cd03251 93 AENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGER-----GVKLSGGQRQRIAIARALLKDPPILIL 162 (234)
T ss_pred HHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeeccC-----CCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999875321 1111111 1235556655 455444443 458999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHHH
Q 044602 258 DEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 258 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
||||+|||+.++..+.+.|+++++ |+|||++||++.. +. .||++++|++|++++.|+++++.+
T Consensus 163 DEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~~-~~d~v~~l~~G~i~~~~~~~~~~~ 225 (234)
T cd03251 163 DEATSALDTESERLVQAALERLMK-NRTTFVIAHRLST-IE-NADRIVVLEDGKIVERGTHEELLA 225 (234)
T ss_pred eCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHH-Hh-hCCEEEEecCCeEeeeCCHHHHHH
Confidence 999999999999999999999964 8999999999864 54 499999999999999999887644
No 222
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-41 Score=346.68 Aligned_cols=218 Identities=25% Similarity=0.374 Sum_probs=180.9
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++||+++|+ .+.+|+|+|+++++||+++|+||||||||||+++|+|+..
T Consensus 4 ~~l~~~~l~~~~~---------------------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (252)
T PRK14255 4 KIITSSDVHLFYG---------------------------KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMND 56 (252)
T ss_pred ceEEEEeEEEEEC---------------------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 4589999999773 2458999999999999999999999999999999999763
Q ss_pred -CC---CccEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC
Q 044602 148 -DD---VKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG 217 (674)
Q Consensus 148 -~~---~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 217 (674)
.+ .+|+|.++|+++.. ..++.++|++|++.+++ .||.||+.+....+. ...++...+++.+.++.++
T Consensus 57 ~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~ 133 (252)
T PRK14255 57 LIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAG--VKDKAVLDEAVETSLKQAA 133 (252)
T ss_pred cCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcC
Confidence 12 48999999998731 34678999999998888 599999998754321 1122223445677888887
Q ss_pred CCc----cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCC
Q 044602 218 LER----CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQP 293 (674)
Q Consensus 218 L~~----~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 293 (674)
+.. ..++ .+.+||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|++||++
T Consensus 134 l~~~i~~~~~~-----~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~ 207 (252)
T PRK14255 134 IWDEVKDHLHE-----SALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSM 207 (252)
T ss_pred CccchhhHHhc-----CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCH
Confidence 642 2333 3458999999999999999999999999999999999999999999999976 58999999997
Q ss_pred chHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 294 SSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 294 ~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
. .+.+.||++++|++|+++..|++.+..
T Consensus 208 ~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 208 H-QASRISDKTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred H-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 5 477899999999999999999988763
No 223
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=4.6e-42 Score=367.12 Aligned_cols=280 Identities=27% Similarity=0.391 Sum_probs=216.9
Q ss_pred CCCcccceeeecCCCCcchhHHHHHHHHh------------------hcccccc-ccccCCCcccc--C-CCCceeEEEE
Q 044602 16 TPSTMGSMQIAAGSNGFGHSIEFMSQAYL------------------RNRYSEI-DIVDESSSIEK--D-RPLPIFLKFE 73 (674)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~-~~~~~~~~~~~--~-~~~~~~l~~~ 73 (674)
-.+..|++++.+|+.|.|.+++-=....+ +.-+..+ ++....+.... . ..+...+.++
T Consensus 259 ~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~m~LP~P~g~L~Ve 338 (580)
T COG4618 259 AVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAERMPLPAPQGALSVE 338 (580)
T ss_pred HHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCCCCCCCceeeEe
Confidence 46788999999999999987763211100 0000000 11111111111 1 1223468999
Q ss_pred eEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccE
Q 044602 74 DVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGN 153 (674)
Q Consensus 74 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~ 153 (674)
++++.-+ ...+++|+|+||++.+||.++|+||||||||||.|+|.|.. ++.+|.
T Consensus 339 ~l~~~PP-------------------------g~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w-~p~~G~ 392 (580)
T COG4618 339 RLTAAPP-------------------------GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIW-PPTSGS 392 (580)
T ss_pred eeeecCC-------------------------CCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHccc-ccCCCc
Confidence 9998221 23478999999999999999999999999999999999977 557999
Q ss_pred EEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 044602 154 ITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGG 229 (674)
Q Consensus 154 I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 229 (674)
|++||.+++. .+-++|||.|||-.||++ ||.|||.=......+..+-++.+.+.++|++- .|++.+||.||+.
T Consensus 393 VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~G-TIaeNIaRf~~~~d~~kIieAA~lAgvHelIl--~lP~GYdT~iG~~ 469 (580)
T COG4618 393 VRLDGADLRQWDREQLGRHIGYLPQDVELFDG-TIAENIARFGEEADPEKVIEAARLAGVHELIL--RLPQGYDTRIGEG 469 (580)
T ss_pred EEecchhhhcCCHHHhccccCcCcccceecCC-cHHHHHHhccccCCHHHHHHHHHHcChHHHHH--hCcCCccCccCCC
Confidence 9999998864 467899999999999999 99999963211111111122333445677764 4599999999976
Q ss_pred ccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeC
Q 044602 230 FIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISE 309 (674)
Q Consensus 230 ~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 309 (674)
+ ..||||||||+++||||..||.+++||||-|+||.+.+..+.+.|.+++++|.|+|+++|+|+ +...+|+|++|++
T Consensus 470 G-~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~~Dkilvl~~ 546 (580)
T COG4618 470 G-ATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASVDKILVLQD 546 (580)
T ss_pred C-CCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhhcceeeeecC
Confidence 6 479999999999999999999999999999999999999999999999999999999999996 5788999999999
Q ss_pred CEEEEecChhHHHHHHHh
Q 044602 310 GYPVYYGKARESMEYFSS 327 (674)
Q Consensus 310 G~iv~~G~~~~~~~~f~~ 327 (674)
|++-.+|+.+|++.....
T Consensus 547 G~~~~FG~r~eVLa~~~~ 564 (580)
T COG4618 547 GRIAAFGPREEVLAKVLR 564 (580)
T ss_pred ChHHhcCCHHHHHHHhcC
Confidence 999999999999877643
No 224
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-41 Score=341.91 Aligned_cols=190 Identities=31% Similarity=0.475 Sum_probs=166.7
Q ss_pred eeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--------hccccEEEEccCCCCCCCCCHH
Q 044602 114 GITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--------ALKRRIGFVTQDDVLLPQLTVE 185 (674)
Q Consensus 114 ~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--------~~~~~igyv~Q~~~l~~~lTV~ 185 (674)
|+|+++++ |+++|+||||||||||+++|+|.++ +.+|+|.++|.++.. ..++.++|++|++.+++.+|+.
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 93 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK-PDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVR 93 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHH
Confidence 99999999 9999999999999999999999874 569999999988631 2456899999999999999999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 044602 186 ETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD 265 (674)
Q Consensus 186 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD 265 (674)
||+.+..... ......++++++++.+|+.+..++.+ .+||||||||++|||+|+.+|++++|||||+|||
T Consensus 94 ~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD 163 (214)
T cd03297 94 ENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRYP-----AQLSGGEKQRVALARALAAQPELLLLDEPFSALD 163 (214)
T ss_pred HHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 9998865321 23334567889999999987666654 4899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEec
Q 044602 266 STSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYG 316 (674)
Q Consensus 266 ~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 316 (674)
+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|
T Consensus 164 ~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 164 RALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 99999999999999875 899999999975 467899999999999998765
No 225
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-41 Score=347.35 Aligned_cols=221 Identities=28% Similarity=0.380 Sum_probs=182.6
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++++|+ .+.+|+|+||++++||+++|+||||||||||+|+|+|...+
T Consensus 6 ~i~~~~l~~~~~---------------------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 58 (253)
T PRK14261 6 ILSTKNLNLWYG---------------------------EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDL 58 (253)
T ss_pred eEEEeeeEEEEC---------------------------CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccC
Confidence 589999998773 24589999999999999999999999999999999997642
Q ss_pred -C---CccEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC
Q 044602 149 -D---VKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL 218 (674)
Q Consensus 149 -~---~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 218 (674)
+ .+|+|.++|+++.. ..++.++|++|++.+++. ||+||+.++...+. .....+.++.+.++++.+++
T Consensus 59 ~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l 135 (253)
T PRK14261 59 IPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHG--EKNKKTLDTIVEKSLKGAAL 135 (253)
T ss_pred CCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcC--CCCHHHHHHHHHHHHHHhcC
Confidence 2 48999999998642 345679999999998885 99999998754331 11233445667888998887
Q ss_pred CccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHH
Q 044602 219 ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMF 298 (674)
Q Consensus 219 ~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~ 298 (674)
.+...+.. +..+.+||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.
T Consensus 136 ~~~l~~~~-~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~ 212 (253)
T PRK14261 136 WDEVKDRL-HDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAA 212 (253)
T ss_pred chhhHHHh-hcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHH
Confidence 53221111 123458999999999999999999999999999999999999999999999976 699999999975 467
Q ss_pred hhcCEEEEEeCCEEEEecChhHHH
Q 044602 299 HMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 299 ~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+.||++++|++|+++..|+++++.
T Consensus 213 ~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 213 RVSDYTGFMYLGKLIEFDKTTQIF 236 (253)
T ss_pred hhCCEEEEEECCEEEEcCCHHHHH
Confidence 899999999999999999988763
No 226
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=3.5e-41 Score=341.35 Aligned_cols=210 Identities=30% Similarity=0.495 Sum_probs=180.0
Q ss_pred EEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 044602 70 LKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD 149 (674)
Q Consensus 70 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~ 149 (674)
++++|+++.|+.. .+.+.+|+|+||++++||+++|+||||||||||+++|+|.+ ++
T Consensus 2 l~~~~l~~~~~~~-----------------------~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~-~~ 57 (220)
T TIGR02982 2 ISIRNLNHYYGHG-----------------------SLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLR-SV 57 (220)
T ss_pred EEEEEEEEEccCC-----------------------CcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CC
Confidence 6789999877421 11256999999999999999999999999999999999987 45
Q ss_pred CccEEEECCEeCCh-------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccc
Q 044602 150 VKGNITYNDIPYNP-------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCR 222 (674)
Q Consensus 150 ~~G~I~~~g~~~~~-------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 222 (674)
.+|+|.++|+++.. ..++.++|++|++.+++.+|+.||+.++..... ....++..++++++++.+||.+..
T Consensus 58 ~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~ 135 (220)
T TIGR02982 58 QEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHL 135 (220)
T ss_pred CCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhh
Confidence 69999999998742 246789999999999998999999998754321 133455566789999999998777
Q ss_pred cccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecCCchHHHhhc
Q 044602 223 HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK-AGRTVITTIHQPSSRMFHMF 301 (674)
Q Consensus 223 ~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~ 301 (674)
++.+ ++||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|+|++||++. ..+.|
T Consensus 136 ~~~~-----~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~ 208 (220)
T TIGR02982 136 DYYP-----HNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVA 208 (220)
T ss_pred hcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhC
Confidence 7654 58999999999999999999999999999999999999999999999986 4899999999975 45899
Q ss_pred CEEEEEeCCEE
Q 044602 302 DKLLLISEGYP 312 (674)
Q Consensus 302 D~v~~L~~G~i 312 (674)
|++++|++|++
T Consensus 209 d~v~~l~~g~~ 219 (220)
T TIGR02982 209 DRIVHMEDGKL 219 (220)
T ss_pred CEEEEEECCEE
Confidence 99999999986
No 227
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=2.4e-41 Score=344.92 Aligned_cols=203 Identities=25% Similarity=0.395 Sum_probs=173.1
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC---CCccEEEECCEeCCh-hc-cccEEEEccCCC--CCCCCC
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD---DVKGNITYNDIPYNP-AL-KRRIGFVTQDDV--LLPQLT 183 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~---~~~G~I~~~g~~~~~-~~-~~~igyv~Q~~~--l~~~lT 183 (674)
+|+|+|+++++||+++|+||||||||||+|+|+|..++ +.+|+|.++|+++.. .. ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 58999999999999999999999999999999998854 169999999998754 23 357999999974 567789
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc---cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 044602 184 VEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER---CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEP 260 (674)
Q Consensus 184 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEP 260 (674)
+.||+.+..... .....+..++++++++.++|++ ..++.+ ..|||||||||+|||||+.+|++|+||||
T Consensus 81 ~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSL---GKLSKQARALILEALEAVGLPDPEEVLKKYP-----FQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHc---CccHHHHHHHHHHHHHHcCCCchHHHHhCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 999998765322 1122344567899999999973 345443 58999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 261 TSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 261 TsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
|+|||+.++..+.+.|++++++ |+|||+++|++. ++..++|++++|++|+++..|+++++.
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999874 899999999976 577899999999999999999988764
No 228
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=2.3e-41 Score=371.93 Aligned_cols=226 Identities=25% Similarity=0.416 Sum_probs=196.6
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+.+|... .+...+++||||++++||++||+|.|||||||+.++|.|+++.
T Consensus 5 lL~V~nL~v~~~~~-----------------------~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~ 61 (539)
T COG1123 5 LLEVENLTVEFATD-----------------------GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPE 61 (539)
T ss_pred eEEEeceEEEEecC-----------------------CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCC
Confidence 58999999988642 1124699999999999999999999999999999999999864
Q ss_pred C---CccEEEECCEeCCh-------h-ccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHH
Q 044602 149 D---VKGNITYNDIPYNP-------A-LKRRIGFVTQDD--VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKE 215 (674)
Q Consensus 149 ~---~~G~I~~~g~~~~~-------~-~~~~igyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~ 215 (674)
. .+|+|.++|+++.. . ..+.|+||||++ .+-|-+||.+.+.-....+. ..++++.++++.++|+.
T Consensus 62 ~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~--~~~~~ea~~~a~elL~~ 139 (539)
T COG1123 62 GGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHG--KGSRAEARKRAVELLEQ 139 (539)
T ss_pred CCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence 3 48999999997631 1 235799999996 46676899998887665543 23478888999999999
Q ss_pred cCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecCCc
Q 044602 216 LGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK-AGRTVITTIHQPS 294 (674)
Q Consensus 216 lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~ 294 (674)
+||++.... +.++++|||||||||.||+||+.+|++||+||||++||+.++.+|+++|+++.+ .|.++|+||||+.
T Consensus 140 Vgl~~~~~~---~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~ 216 (539)
T COG1123 140 VGLPDPERR---DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLG 216 (539)
T ss_pred cCCCChhhh---ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH
Confidence 999986654 568999999999999999999999999999999999999999999999999986 4999999999985
Q ss_pred hHHHhhcCEEEEEeCCEEEEecChhHHHH
Q 044602 295 SRMFHMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 295 ~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
.+.++||||+||++|++|+.|+++++++
T Consensus 217 -Vva~~aDrv~Vm~~G~iVE~G~~~~i~~ 244 (539)
T COG1123 217 -VVAELADRVVVMYKGEIVETGPTEEILS 244 (539)
T ss_pred -HHHHhcCeEEEEECCEEEEecCHHHHHh
Confidence 5889999999999999999999999975
No 229
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=3.1e-41 Score=382.32 Aligned_cols=212 Identities=25% Similarity=0.427 Sum_probs=186.7
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|. .+.+|+|+||++++||+++|+||||||||||||+|+|+++
T Consensus 11 ~l~~~~l~~~~~---------------------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~- 62 (510)
T PRK15439 11 LLCARSISKQYS---------------------------GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP- 62 (510)
T ss_pred eEEEEeEEEEeC---------------------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-
Confidence 589999999773 2459999999999999999999999999999999999874
Q ss_pred CCccEEEECCEeCCh----h-ccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 044602 149 DVKGNITYNDIPYNP----A-LKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRH 223 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~----~-~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 223 (674)
+.+|+|.++|+++.. . .++.+|||+|++.+++.+||.||+.++... ..+..++++++++.+||.+..+
T Consensus 63 p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~ 135 (510)
T PRK15439 63 PDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLD 135 (510)
T ss_pred CCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCcccc
Confidence 569999999998742 1 235699999999999999999999886311 1234467889999999988777
Q ss_pred ccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCE
Q 044602 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDK 303 (674)
Q Consensus 224 ~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 303 (674)
+.++ +|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||+
T Consensus 136 ~~~~-----~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~ 209 (510)
T PRK15439 136 SSAG-----SLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADR 209 (510)
T ss_pred CChh-----hCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCE
Confidence 7654 89999999999999999999999999999999999999999999999888999999999975 47789999
Q ss_pred EEEEeCCEEEEecChhHH
Q 044602 304 LLLISEGYPVYYGKARES 321 (674)
Q Consensus 304 v~~L~~G~iv~~G~~~~~ 321 (674)
+++|++|++++.|++++.
T Consensus 210 i~~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 210 ISVMRDGTIALSGKTADL 227 (510)
T ss_pred EEEEECCEEEEecChHHc
Confidence 999999999999998775
No 230
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=4.1e-41 Score=350.96 Aligned_cols=227 Identities=24% Similarity=0.402 Sum_probs=186.8
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||++.|+..... + ...++.+|+|+||++++||+++|+||||||||||+++|+|.. +
T Consensus 3 ~l~~~nl~~~~~~~~~~-----------------~-~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~ 63 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLS-----------------G-KHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLE-S 63 (268)
T ss_pred eEEEeceEEEecCCccc-----------------c-ccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-C
Confidence 47899999988521000 0 011356999999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEeCCh-------hccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 044602 149 DVKGNITYNDIPYNP-------ALKRRIGFVTQDD--VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE 219 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~-------~~~~~igyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 219 (674)
+.+|+|.++|+++.. ..++.++|++|++ .+++..|+.||+.+..... ......+..++++++++.+|+.
T Consensus 64 p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~ 141 (268)
T PRK10419 64 PSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLD 141 (268)
T ss_pred CCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCC
Confidence 569999999998642 2467899999997 4667789999997754211 1223445556789999999996
Q ss_pred -ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHH
Q 044602 220 -RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRM 297 (674)
Q Consensus 220 -~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i 297 (674)
+..++.+ +.||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|+|++||++. .+
T Consensus 142 ~~~~~~~~-----~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i 215 (268)
T PRK10419 142 DSVLDKRP-----PQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LV 215 (268)
T ss_pred hhHhhCCC-----ccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HH
Confidence 4556544 589999999999999999999999999999999999999999999999875 899999999975 47
Q ss_pred HhhcCEEEEEeCCEEEEecChhHHH
Q 044602 298 FHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 298 ~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.++||++++|++|++++.|+++++.
T Consensus 216 ~~~~d~i~~l~~G~i~~~g~~~~~~ 240 (268)
T PRK10419 216 ERFCQRVMVMDNGQIVETQPVGDKL 240 (268)
T ss_pred HHhCCEEEEEECCEEeeeCChhhcc
Confidence 7899999999999999999998864
No 231
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-42 Score=324.59 Aligned_cols=208 Identities=25% Similarity=0.435 Sum_probs=184.3
Q ss_pred cccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCC-----------------hhcccc
Q 044602 106 KDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN-----------------PALKRR 168 (674)
Q Consensus 106 ~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~-----------------~~~~~~ 168 (674)
++...+||+||++.++|+++.|+|.|||||||+|+||. .+..|..|.|.+||+++. +.+|.+
T Consensus 16 ~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN-~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~ 94 (256)
T COG4598 16 YGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCIN-FLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTR 94 (256)
T ss_pred cccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHH-hhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHH
Confidence 35577999999999999999999999999999999999 455667999999998752 135668
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHH
Q 044602 169 IGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEI 248 (674)
Q Consensus 169 igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL 248 (674)
.|+|+|+..|++++||.||+.-+-.-- -..++.+..++++.+|.++||.+..|.. +..|||||+||++|||||
T Consensus 95 L~mVFQ~FNLWsHmtvLeNViEaPvhV--Lg~~k~ea~e~Ae~~L~kVGi~ek~~~Y-----P~~LSGGQQQR~aIARaL 167 (256)
T COG4598 95 LGMVFQHFNLWSHMTVLENVIEAPVHV--LGVSKAEAIERAEKYLAKVGIAEKADAY-----PAHLSGGQQQRVAIARAL 167 (256)
T ss_pred hhHhhhhcchhHHHHHHHHHHhcchHh--hcCCHHHHHHHHHHHHHHhCchhhhhcC-----ccccCchHHHHHHHHHHH
Confidence 999999999999999999987542211 1357888889999999999999888754 558999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 249 LVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 249 ~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+.+|+++++|||||+|||+-.-++++.+++|+++|+|.+++||.... ..+...+|++|++|.|-+.|+|+++.
T Consensus 168 ameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~F-AR~Vss~v~fLh~G~iEE~G~P~qvf 240 (256)
T COG4598 168 AMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGF-ARDVSSHVIFLHQGKIEEEGPPEQVF 240 (256)
T ss_pred hcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhH-HHhhhhheEEeecceecccCChHHHh
Confidence 99999999999999999999999999999999999999999999764 67789999999999999999999873
No 232
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-41 Score=347.77 Aligned_cols=206 Identities=23% Similarity=0.344 Sum_probs=174.2
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC----CCccEEEECCEeCCh------hccccEEEEccCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD----DVKGNITYNDIPYNP------ALKRRIGFVTQDDVL 178 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~----~~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l 178 (674)
+.+|+|+||++++||+++|+|+||||||||+|+|+|++.+ +.+|+|.++|+++.. .+++.++|++|++.+
T Consensus 21 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 100 (261)
T PRK14263 21 FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNP 100 (261)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCcc
Confidence 5699999999999999999999999999999999998854 368999999998742 346789999999988
Q ss_pred CCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEe
Q 044602 179 LPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLD 258 (674)
Q Consensus 179 ~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLD 258 (674)
++ +|+.||+.++..... . ..+..++++++++.++|.+..+.... ..++.||||||||++|||||+.+|++|+||
T Consensus 101 ~~-~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllD 174 (261)
T PRK14263 101 FS-MSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKLK-VSGLSLSGGQQQRLCIARAIATEPEVLLLD 174 (261)
T ss_pred cc-ccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhhh-CCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 84 899999998764321 1 22334678899999998653322221 245689999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEe--------CCEEEEecChhHHH
Q 044602 259 EPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLIS--------EGYPVYYGKARESM 322 (674)
Q Consensus 259 EPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~--------~G~iv~~G~~~~~~ 322 (674)
|||+|||+.++..+.+.|+++++ ++|+|++||++. ++.++||++++|+ +|++++.|+++++.
T Consensus 175 EPtsgLD~~~~~~l~~~l~~~~~-~~tii~isH~~~-~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 175 EPCSALDPIATRRVEELMVELKK-DYTIALVTHNMQ-QAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIF 244 (261)
T ss_pred CCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEecccccccCCceEEEeCCHHHHH
Confidence 99999999999999999999964 799999999976 4778999999996 89999999998764
No 233
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=3.7e-42 Score=391.92 Aligned_cols=235 Identities=28% Similarity=0.428 Sum_probs=182.4
Q ss_pred CcccceeeecCCCCcchhHHHHHHHHh---------------------hccccccccccCCCcc---c---c--CCCCce
Q 044602 18 STMGSMQIAAGSNGFGHSIEFMSQAYL---------------------RNRYSEIDIVDESSSI---E---K--DRPLPI 68 (674)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~---~---~--~~~~~~ 68 (674)
..+|++.+.+|..+.|.++.++.+... .++. .++.+.+++. . . ....+.
T Consensus 256 ~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri--~~~l~~~~~~~~~~~~~~~~~~~~~~ 333 (529)
T TIGR02868 256 LWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERI--EEVTGAKGPRPEGVVPAAGALGLGKP 333 (529)
T ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcCCCCcCCCCCCCCcccCCCCc
Confidence 356778888999999988887654321 0000 0222211110 0 0 011234
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++|+||+|+|+. .+++|+|+|+++++||.+||+||||||||||+|+|+|.+ +
T Consensus 334 ~I~~~~vsf~Y~~--------------------------~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~-~ 386 (529)
T TIGR02868 334 TLELRDLSFGYPG--------------------------SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLL-D 386 (529)
T ss_pred eEEEEEEEEecCC--------------------------CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C
Confidence 6999999998852 135999999999999999999999999999999999977 5
Q ss_pred CCccEEEECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-------C
Q 044602 149 DVKGNITYNDIPYNP---ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG-------L 218 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~---~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L 218 (674)
+.+|+|.+||+++++ ++|++++||+|++.+|++ |++|||.++.. +.++ ++++++++..+ |
T Consensus 387 p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~-TI~eNI~~g~~-----~~~~----e~i~~al~~a~l~~~i~~l 456 (529)
T TIGR02868 387 PLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDT-TVRDNLRLGRP-----DATD----EELWAALERVGLADWLRSL 456 (529)
T ss_pred CCCcEEEECCEEhhhHHHHHHhheEEEccCcccccc-cHHHHHhccCC-----CCCH----HHHHHHHHHcCCHHHHHhC
Confidence 569999999998763 578899999999999998 99999998631 1222 23444444433 4
Q ss_pred CccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCC
Q 044602 219 ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQP 293 (674)
Q Consensus 219 ~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 293 (674)
++..||.+|+.+ ..||||||||++|||||+++|+||+||||||+||++++..+.+.|+++. +++|+|+++|++
T Consensus 457 p~GldT~ige~G-~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 457 PDGLDTVLGEGG-ARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred cccccchhcccc-CcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 678899999766 4699999999999999999999999999999999999999999999874 489999999984
No 234
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=9.1e-41 Score=345.03 Aligned_cols=221 Identities=27% Similarity=0.372 Sum_probs=182.1
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC-C
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL-T 147 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~-~ 147 (674)
.++++||++.|+ .+.+|+|+||++++||+++|+||||||||||+++|+|+. .
T Consensus 7 ~l~~~~l~~~~~---------------------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~ 59 (252)
T CHL00131 7 ILEIKNLHASVN---------------------------ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAY 59 (252)
T ss_pred eEEEEeEEEEeC---------------------------CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcC
Confidence 589999998763 145899999999999999999999999999999999973 2
Q ss_pred CCCccEEEECCEeCCh----hccc-cEEEEccCCCCCCCCCHHHHHHHHHhhcCC----CCCCHHHHHHHHHHHHHHcCC
Q 044602 148 DDVKGNITYNDIPYNP----ALKR-RIGFVTQDDVLLPQLTVEETLVFAAFLRLP----GNMNRQQKYARVQMILKELGL 218 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~----~~~~-~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~----~~~~~~~~~~~v~~~l~~lgL 218 (674)
++.+|+|.++|.++.. ..++ .++|++|++.+++.+|+.+++.+....... ......+..+++.++++.+|+
T Consensus 60 ~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 139 (252)
T CHL00131 60 KILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGM 139 (252)
T ss_pred cCCCceEEECCEEcccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCC
Confidence 4579999999998743 2222 488999999999999999999876432110 011222334577889999999
Q ss_pred C-ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHH
Q 044602 219 E-RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRM 297 (674)
Q Consensus 219 ~-~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i 297 (674)
. +..++.++ .+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++.. +
T Consensus 140 ~~~~~~~~~~----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~-~ 214 (252)
T CHL00131 140 DPSFLSRNVN----EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRL-L 214 (252)
T ss_pred chhhhccccc----cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-H
Confidence 7 35555442 2599999999999999999999999999999999999999999999998779999999999754 4
Q ss_pred Hhh-cCEEEEEeCCEEEEecChhHH
Q 044602 298 FHM-FDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 298 ~~~-~D~v~~L~~G~iv~~G~~~~~ 321 (674)
... +|++++|++|++++.|+++.+
T Consensus 215 ~~~~~d~i~~l~~G~i~~~~~~~~~ 239 (252)
T CHL00131 215 DYIKPDYVHVMQNGKIIKTGDAELA 239 (252)
T ss_pred HhhhCCEEEEEeCCEEEEecChhhh
Confidence 555 899999999999999999844
No 235
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-42 Score=362.80 Aligned_cols=223 Identities=30% Similarity=0.449 Sum_probs=191.9
Q ss_pred ceeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 67 PIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 67 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+..+.|.||+|.|. ..+++|+|+||++++|+.+|++||||+||||++++|-..+
T Consensus 260 ~g~v~F~~V~F~y~--------------------------~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFy 313 (497)
T COG5265 260 LGAVAFINVSFAYD--------------------------PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFY 313 (497)
T ss_pred cceEEEEEEEeecc--------------------------ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHh
Confidence 34589999999885 2477999999999999999999999999999999999554
Q ss_pred CCCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccc
Q 044602 147 TDDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCR 222 (674)
Q Consensus 147 ~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 222 (674)
...+|.|.+||+++.. .+|+-||.||||..||++ |+..|+.|+.......++....+.....+.++.+ ++.+
T Consensus 314 -D~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFND-ti~yni~ygr~~at~eev~aaa~~aqi~~fi~~l--P~gy 389 (497)
T COG5265 314 -DVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFND-TIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSL--PEGY 389 (497)
T ss_pred -CCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhh-hHHHHHhccCccccHHHHHHHHHHhhhhHHHHhC--chhh
Confidence 6679999999999863 689999999999999998 9999999984322211122222334455666655 9999
Q ss_pred cccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcC
Q 044602 223 HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFD 302 (674)
Q Consensus 223 ~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 302 (674)
++.||+++.+ |||||||||+|||+++.+|+||+|||.||+||..++++|+..|++.+ .|+|.+++.|++++ .--+|
T Consensus 390 ~t~Vgerglk-lSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlst--i~~ad 465 (497)
T COG5265 390 DTGVGERGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLST--IIDAD 465 (497)
T ss_pred hcccchheee-ccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhh--ccCCc
Confidence 9999998875 99999999999999999999999999999999999999999999987 59999999999987 44589
Q ss_pred EEEEEeCCEEEEecChhHHHH
Q 044602 303 KLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 303 ~v~~L~~G~iv~~G~~~~~~~ 323 (674)
.|++|++|+|++.|+|+++++
T Consensus 466 eiivl~~g~i~erg~h~~ll~ 486 (497)
T COG5265 466 EIIVLDNGRIVERGTHEELLA 486 (497)
T ss_pred eEEEeeCCEEEecCcHHHHHH
Confidence 999999999999999999975
No 236
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=1.1e-41 Score=348.88 Aligned_cols=201 Identities=29% Similarity=0.455 Sum_probs=162.9
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTV 184 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV 184 (674)
+++|+|+||++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++.. ..++.++|++|++.+++ .||
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv 93 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFY-DPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-GTI 93 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccC-CCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-hhH
Confidence 46999999999999999999999999999999999987 4569999999988642 34567999999998887 599
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHH-----HHHHHHHHc--CCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEE
Q 044602 185 EETLVFAAFLRLPGNMNRQQKYA-----RVQMILKEL--GLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLL 257 (674)
Q Consensus 185 ~e~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illL 257 (674)
+||+.+....+ ..++..+ .+.+.++.+ ++....++ .+++||||||||++|||+|+.+|++|+|
T Consensus 94 ~e~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~LS~G~~qrv~la~al~~~p~llll 163 (238)
T cd03249 94 AENIRYGKPDA-----TDEEVEEAAKKANIHDFIMSLPDGYDTLVGE-----RGSQLSGGQKQRIAIARALLRNPKILLL 163 (238)
T ss_pred HHHhhccCCCC-----CHHHHHHHHHHcChHHHHHhhccccceeecc-----CCccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99998753211 1111111 122233333 33333333 3468999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHHHH
Q 044602 258 DEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEY 324 (674)
Q Consensus 258 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 324 (674)
||||+|||+.++..+.+.|++++ +|+|||++||++.. + ..||++++|++|++++.|+.+++.+.
T Consensus 164 DEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~-~-~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (238)
T cd03249 164 DEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLST-I-RNADLIAVLQNGQVVEQGTHDELMAQ 227 (238)
T ss_pred eCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-H-hhCCEEEEEECCEEEEeCCHHHHhhc
Confidence 99999999999999999999987 79999999999764 4 48999999999999999998877554
No 237
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=2.4e-41 Score=338.63 Aligned_cols=188 Identities=29% Similarity=0.502 Sum_probs=164.1
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCC---h-----hccccEEEEccCCCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN---P-----ALKRRIGFVTQDDVLLP 180 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~---~-----~~~~~igyv~Q~~~l~~ 180 (674)
+++|+|+||++++||+++|+||||||||||+++|+|++ ++.+|+|.++|+++. . ..++.++|++|++.+++
T Consensus 11 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (206)
T TIGR03608 11 KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLE-KFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIE 89 (206)
T ss_pred EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCC-CCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhcc
Confidence 46999999999999999999999999999999999987 456999999999853 1 24568999999999999
Q ss_pred CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 044602 181 QLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEP 260 (674)
Q Consensus 181 ~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEP 260 (674)
.+|++||+.+..... ...+.+..++++++++.+||.+..++.+ .+||||||||++|||||+.+|++|+||||
T Consensus 90 ~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr~~laral~~~p~llllDEP 161 (206)
T TIGR03608 90 NETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKI-----YELSGGEQQRVALARAILKDPPLILADEP 161 (206)
T ss_pred CCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 899999999875432 2234455667899999999988777765 48999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEE
Q 044602 261 TSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLI 307 (674)
Q Consensus 261 TsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L 307 (674)
|+|||+.++..+.+.|+++.++|+|+|++||++. ..+.||++++|
T Consensus 162 t~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 162 TGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred cCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 9999999999999999999877999999999985 34689999875
No 238
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=2.8e-41 Score=371.36 Aligned_cols=231 Identities=26% Similarity=0.413 Sum_probs=194.8
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++||+..|..++.. + .-..+...+++||||++++||++||+|+||||||||.|+|+|+.+
T Consensus 279 ~ll~V~~l~k~y~~~~~~------------~----~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~ 342 (539)
T COG1123 279 PLLSVRNLSKRYGSRKGL------------F----VRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLP 342 (539)
T ss_pred ceeEeeeeeeeecccccc------------c----cccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 458899999999753210 0 000233568999999999999999999999999999999999885
Q ss_pred CCCccEEEECCEeCC------hhccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 044602 148 DDVKGNITYNDIPYN------PALKRRIGFVTQDD--VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE 219 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~------~~~~~~igyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 219 (674)
| .+|+|.++|.+.+ ...++++-+||||+ .|.|.+||+++|.-....... ...++.++++.++++.+||+
T Consensus 343 P-~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~--~~~~~~~~rv~~ll~~VgL~ 419 (539)
T COG1123 343 P-SSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGG--GSGAERRARVAELLELVGLP 419 (539)
T ss_pred C-CCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcc--cchHHHHHHHHHHHHHcCCC
Confidence 5 7999999998732 13567899999986 589999999999987654432 23566777899999999998
Q ss_pred ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHH
Q 044602 220 RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMF 298 (674)
Q Consensus 220 ~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~ 298 (674)
.. ..++++++||||||||++|||||+.+|++|++|||||.||+..+..++++|+++.++ |.|.|+||||.. .+.
T Consensus 420 ~~----~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~-vV~ 494 (539)
T COG1123 420 PE----FLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA-VVR 494 (539)
T ss_pred HH----HHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHH
Confidence 42 334567899999999999999999999999999999999999999999999999876 999999999975 588
Q ss_pred hhcCEEEEEeCCEEEEecChhHHH
Q 044602 299 HMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 299 ~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
++||||++|++|++|+.|+.+++.
T Consensus 495 ~i~drv~vm~~G~iVE~G~~~~v~ 518 (539)
T COG1123 495 YIADRVAVMYDGRIVEEGPTEKVF 518 (539)
T ss_pred hhCceEEEEECCeEEEeCCHHHHh
Confidence 999999999999999999888774
No 239
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-40 Score=348.86 Aligned_cols=219 Identities=24% Similarity=0.322 Sum_probs=182.5
Q ss_pred CCceeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHc
Q 044602 65 PLPIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 65 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G 144 (674)
+.+..++++||+++|. .+.+|+|+|+++++||+++|+||||||||||+++|+|
T Consensus 16 ~~~~~l~~~nl~~~~~---------------------------~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~G 68 (274)
T PRK14265 16 PDHSVFEVEGVKVFYG---------------------------GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNR 68 (274)
T ss_pred CCCceEEEeeEEEEeC---------------------------CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4455799999999763 2458999999999999999999999999999999999
Q ss_pred CCCC----CCccEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 044602 145 RLTD----DVKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILK 214 (674)
Q Consensus 145 ~~~~----~~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~ 214 (674)
+..+ +.+|+|.++|+++.. .+++.++|++|++.+++. ||.||+.++...+. .. ....+.+++.++
T Consensus 69 l~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~-~~~~~~~~~~l~ 143 (274)
T PRK14265 69 MNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YK-GNLDELVEDSLR 143 (274)
T ss_pred ccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---ch-HHHHHHHHHHHH
Confidence 8742 258999999998731 346789999999988875 99999988753321 11 122345677788
Q ss_pred HcCCCc----cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEe
Q 044602 215 ELGLER----CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTI 290 (674)
Q Consensus 215 ~lgL~~----~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~ 290 (674)
.+++.+ ..++ .+..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++
T Consensus 144 ~~~l~~~l~~~~~~-----~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~s 217 (274)
T PRK14265 144 RAAIWEEVKDKLKE-----KGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVT 217 (274)
T ss_pred HcccchhhHHHhcC-----CcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEe
Confidence 888742 2333 3458999999999999999999999999999999999999999999999975 79999999
Q ss_pred cCCchHHHhhcCEEEEEe---------CCEEEEecChhHHH
Q 044602 291 HQPSSRMFHMFDKLLLIS---------EGYPVYYGKARESM 322 (674)
Q Consensus 291 H~~~~~i~~~~D~v~~L~---------~G~iv~~G~~~~~~ 322 (674)
|++. .+.++||++++|+ +|++++.|+++++.
T Consensus 218 H~~~-~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 218 HNMQ-QASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMF 257 (274)
T ss_pred CCHH-HHHHhCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence 9975 4788999999998 89999999998874
No 240
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=8.3e-41 Score=345.63 Aligned_cols=218 Identities=24% Similarity=0.375 Sum_probs=180.3
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|+ .+.+|+|+|+++++||+++|+||||||||||+++|+|.. +
T Consensus 3 ~l~~~~l~~~~~---------------------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~ 54 (253)
T TIGR02323 3 LLQVSGLSKSYG---------------------------GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRL-A 54 (253)
T ss_pred eEEEeeeEEEeC---------------------------CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCC-C
Confidence 488999998774 135899999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEe-----CCh----h----ccccEEEEccCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 044602 149 DVKGNITYNDIP-----YNP----A----LKRRIGFVTQDDV--LLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMIL 213 (674)
Q Consensus 149 ~~~G~I~~~g~~-----~~~----~----~~~~igyv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l 213 (674)
+.+|+|.++|++ +.. . .++.++|++|++. +++.+|+.||+.+..... . .....+..+++++++
T Consensus 55 ~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~l 132 (253)
T TIGR02323 55 PDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAI-G-ARHYGNIRAAAHDWL 132 (253)
T ss_pred CCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHh-c-ccchHHHHHHHHHHH
Confidence 569999999976 431 1 2357999999974 456679999997643211 1 011223446788999
Q ss_pred HHcCCC-ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEec
Q 044602 214 KELGLE-RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIH 291 (674)
Q Consensus 214 ~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H 291 (674)
+.+|+. +..++.+ +.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|+|+++|
T Consensus 133 ~~l~l~~~~~~~~~-----~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH 207 (253)
T TIGR02323 133 EEVEIDPTRIDDLP-----RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTH 207 (253)
T ss_pred HHcCCChhhhhcCc-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 999996 3556554 589999999999999999999999999999999999999999999998764 899999999
Q ss_pred CCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 292 QPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 292 ~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
++. .+...||++++|++|++++.|+++++.
T Consensus 208 ~~~-~~~~~~d~~~~l~~G~i~~~~~~~~~~ 237 (253)
T TIGR02323 208 DLG-VARLLAQRLLVMQQGRVVESGLTDQVL 237 (253)
T ss_pred CHH-HHHHhcCEEEEEECCEEEEECCHHHHh
Confidence 975 467789999999999999999988663
No 241
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-41 Score=345.34 Aligned_cols=214 Identities=33% Similarity=0.469 Sum_probs=171.6
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++++|+. .+.+|+|+||++++||+++|+|||||||||||++|+|+. +
T Consensus 2 ~l~~~~l~~~~~~--------------------------~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~-~ 54 (229)
T cd03254 2 EIEFENVNFSYDE--------------------------KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFY-D 54 (229)
T ss_pred eEEEEEEEEecCC--------------------------CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-C
Confidence 3789999987631 135899999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccc--
Q 044602 149 DVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCR-- 222 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-- 222 (674)
+.+|+|.++|.++.. .+++.++|++|++.+++. ||.||+.+.... ... .++++.++.+++.+..
T Consensus 55 ~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~-----~~~----~~~~~~~~~~~l~~~~~~ 124 (229)
T cd03254 55 PQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRPN-----ATD----EEVIEAAKEAGAHDFIMK 124 (229)
T ss_pred CCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCCC-----CCH----HHHHHHHHHhChHHHHHh
Confidence 569999999988642 456789999999988886 999999875321 111 1233333333332211
Q ss_pred -----cccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHH
Q 044602 223 -----HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRM 297 (674)
Q Consensus 223 -----~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i 297 (674)
++.. +..+++|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|++++ +|+|||++||++.. +
T Consensus 125 ~~~~~~~~~-~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~ 201 (229)
T cd03254 125 LPNGYDTVL-GENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLST-I 201 (229)
T ss_pred CcccccCHh-hcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH-H
Confidence 1111 12346899999999999999999999999999999999999999999999986 48999999999864 4
Q ss_pred HhhcCEEEEEeCCEEEEecChhHHHH
Q 044602 298 FHMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 298 ~~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
..||++++|++|++++.|+.++..+
T Consensus 202 -~~~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 202 -KNADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred -hhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 4699999999999999998876643
No 242
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-40 Score=344.13 Aligned_cols=221 Identities=23% Similarity=0.378 Sum_probs=183.5
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC-
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT- 147 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~- 147 (674)
.++++||++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+..
T Consensus 3 ~l~~~~v~~~~~---------------------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 55 (250)
T PRK14266 3 RIEVENLNTYFD---------------------------DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDL 55 (250)
T ss_pred EEEEEeEEEEeC---------------------------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 478899988763 2458999999999999999999999999999999999753
Q ss_pred -C--CCccEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC
Q 044602 148 -D--DVKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL 218 (674)
Q Consensus 148 -~--~~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 218 (674)
+ +.+|+|.+||+++.. ..++.++|++|++.+++. |+.||+.++.... ....++...+++.++++.+||
T Consensus 56 ~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l 132 (250)
T PRK14266 56 IPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIH--GEDDEDFIEERVEESLKAAAL 132 (250)
T ss_pred CCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhc--CCCCHHHHHHHHHHHHHHcCC
Confidence 2 368999999998642 356789999999998986 9999998864322 111233445678899999998
Q ss_pred CccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHH
Q 044602 219 ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMF 298 (674)
Q Consensus 219 ~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~ 298 (674)
.+...... +..+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.
T Consensus 133 ~~~l~~~~-~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~ 209 (250)
T PRK14266 133 WDEVKDKL-DKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QAT 209 (250)
T ss_pred chhHHHHH-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHH
Confidence 54321111 233458999999999999999999999999999999999999999999999965 899999999975 578
Q ss_pred hhcCEEEEEeCCEEEEecChhHHH
Q 044602 299 HMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 299 ~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+.+|++++|++|++++.|+++++.
T Consensus 210 ~~~~~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 210 RVSKYTSFFLNGEIIESGLTDQIF 233 (250)
T ss_pred hhcCEEEEEECCeEEEeCCHHHHH
Confidence 899999999999999999998763
No 243
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=9.2e-41 Score=331.92 Aligned_cols=191 Identities=51% Similarity=0.876 Sum_probs=165.9
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
+.++++||+++|+.... ...+++|+|+|+++++||+++|+||||||||||+++|+|..+
T Consensus 2 ~~l~~~~ls~~~~~~~~---------------------~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~ 60 (194)
T cd03213 2 VTLSFRNLTVTVKSSPS---------------------KSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRT 60 (194)
T ss_pred cEEEEEeeEEEEecCCC---------------------cccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35899999998852100 012569999999999999999999999999999999999871
Q ss_pred -CCCccEEEECCEeCCh-hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccc
Q 044602 148 -DDVKGNITYNDIPYNP-ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTR 225 (674)
Q Consensus 148 -~~~~G~I~~~g~~~~~-~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 225 (674)
++.+|+|.++|+++.. ..++.++|++|++.+++.+|++||+.+.....
T Consensus 61 ~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~------------------------------ 110 (194)
T cd03213 61 GLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR------------------------------ 110 (194)
T ss_pred CCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc------------------------------
Confidence 4469999999998864 45678999999999999999999998652100
Q ss_pred ccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEE
Q 044602 226 VGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLL 305 (674)
Q Consensus 226 vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 305 (674)
.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++..++.+.||+++
T Consensus 111 -------~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~ 183 (194)
T cd03213 111 -------GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLL 183 (194)
T ss_pred -------cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEE
Confidence 5999999999999999999999999999999999999999999999987799999999998656778999999
Q ss_pred EEeCCEEEEec
Q 044602 306 LISEGYPVYYG 316 (674)
Q Consensus 306 ~L~~G~iv~~G 316 (674)
+|++|++++.|
T Consensus 184 ~l~~G~i~~~~ 194 (194)
T cd03213 184 LLSQGRVIYFG 194 (194)
T ss_pred EEeCCEEEecC
Confidence 99999998764
No 244
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=3e-41 Score=352.35 Aligned_cols=213 Identities=23% Similarity=0.343 Sum_probs=178.9
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++++|+. +.+.+|+|+||+|++||+++|+||||||||||+++|+|+++
T Consensus 2 ~i~~~nls~~~~~-------------------------~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~- 55 (275)
T cd03289 2 QMTVKDLTAKYTE-------------------------GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN- 55 (275)
T ss_pred eEEEEEEEEEeCC-------------------------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-
Confidence 3789999998852 12458999999999999999999999999999999999874
Q ss_pred CCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccc--
Q 044602 149 DVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCR-- 222 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-- 222 (674)
.+|+|+++|.++.. .+++.++||+|++.+|+. ||+||+.... .... +++.+.++.+||.+..
T Consensus 56 -~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~-tv~~nl~~~~------~~~~----~~~~~~l~~~gL~~~~~~ 123 (275)
T cd03289 56 -TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSG-TFRKNLDPYG------KWSD----EEIWKVAEEVGLKSVIEQ 123 (275)
T ss_pred -CCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchh-hHHHHhhhcc------CCCH----HHHHHHHHHcCCHHHHHh
Confidence 58999999998742 467889999999999986 9999996421 1122 3456777888876543
Q ss_pred -----cccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHH
Q 044602 223 -----HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRM 297 (674)
Q Consensus 223 -----~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i 297 (674)
++.+++ ....||||||||++|||||+.+|+||+|||||++||+.+...+.+.|+++. +++|||+++|++. .+
T Consensus 124 ~p~~l~~~~~~-~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i 200 (275)
T cd03289 124 FPGQLDFVLVD-GGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE-AM 200 (275)
T ss_pred CcccccceecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH-HH
Confidence 444443 335699999999999999999999999999999999999999999999875 4899999999985 34
Q ss_pred HhhcCEEEEEeCCEEEEecChhHHHH
Q 044602 298 FHMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 298 ~~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
..||||++|++|++++.|+++++++
T Consensus 201 -~~~dri~vl~~G~i~~~g~~~~l~~ 225 (275)
T cd03289 201 -LECQRFLVIEENKVRQYDSIQKLLN 225 (275)
T ss_pred -HhCCEEEEecCCeEeecCCHHHHhh
Confidence 4599999999999999999999864
No 245
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=5.5e-41 Score=379.67 Aligned_cols=207 Identities=27% Similarity=0.458 Sum_probs=177.0
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC-CCccEEEECCEeCCh-----hccccEEEEccCCCCCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD-DVKGNITYNDIPYNP-----ALKRRIGFVTQDDVLLPQL 182 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~-~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~~l~~~l 182 (674)
+++|+|+||++++||+++|+||||||||||+|+|+|..++ +.+|+|.++|+++.. ..++.+|||+|++.+++.+
T Consensus 14 ~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 93 (500)
T TIGR02633 14 VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPEL 93 (500)
T ss_pred eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCC
Confidence 4599999999999999999999999999999999998754 369999999998753 1346799999999999999
Q ss_pred CHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHHHcCCCccc-cccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 044602 183 TVEETLVFAAFLRLPG-NMNRQQKYARVQMILKELGLERCR-HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEP 260 (674)
Q Consensus 183 TV~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~-~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEP 260 (674)
||.||+.++....... ....++..++++++++.+||.+.. ++.+ ++|||||||||+|||||+.+|++||||||
T Consensus 94 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~iA~al~~~p~lllLDEP 168 (500)
T TIGR02633 94 SVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPV-----GDYGGGQQQLVEIAKALNKQARLLILDEP 168 (500)
T ss_pred cHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCch-----hhCCHHHHHHHHHHHHHhhCCCEEEEeCC
Confidence 9999998875322111 123344456788999999998654 3444 48999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHH
Q 044602 261 TSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 261 TsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
|+|||+.++..+.+.|++++++|+|||++||++. .+.+.||++++|++|++++.|++++.
T Consensus 169 t~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 169 SSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeCCeEeeecCcccC
Confidence 9999999999999999999888999999999975 57789999999999999999987643
No 246
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-41 Score=349.86 Aligned_cols=219 Identities=24% Similarity=0.395 Sum_probs=180.7
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|+. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+++
T Consensus 6 ~l~~~~l~~~~~~--------------------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~- 58 (272)
T PRK15056 6 GIVVNDVTVTWRN--------------------------GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR- 58 (272)
T ss_pred eEEEEeEEEEecC--------------------------CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-
Confidence 5899999987741 2458999999999999999999999999999999999874
Q ss_pred CCccEEEECCEeCChhcc-ccEEEEccCCCCC--CCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccc
Q 044602 149 DVKGNITYNDIPYNPALK-RRIGFVTQDDVLL--PQLTVEETLVFAAFLRLP-GNMNRQQKYARVQMILKELGLERCRHT 224 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~~~~-~~igyv~Q~~~l~--~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~ 224 (674)
+.+|+|.++|+++....+ +.++|++|++.+. ...+++||+.++...... .........++++++++.+||.+..++
T Consensus 59 p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 138 (272)
T PRK15056 59 LASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHR 138 (272)
T ss_pred CCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcC
Confidence 569999999998754333 4699999997642 234789998764211000 001122334567889999999887777
Q ss_pred cccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEE
Q 044602 225 RVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKL 304 (674)
Q Consensus 225 ~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v 304 (674)
.++ +||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++
T Consensus 139 ~~~-----~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v 212 (272)
T PRK15056 139 QIG-----ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYT 212 (272)
T ss_pred Ccc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEE
Confidence 654 89999999999999999999999999999999999999999999999877999999999975 477899999
Q ss_pred EEEeCCEEEEecChhHH
Q 044602 305 LLISEGYPVYYGKARES 321 (674)
Q Consensus 305 ~~L~~G~iv~~G~~~~~ 321 (674)
+++ +|++++.|+++++
T Consensus 213 ~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 213 VMV-KGTVLASGPTETT 228 (272)
T ss_pred EEE-CCEEEeecCHHhc
Confidence 877 8999999998876
No 247
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=3.7e-41 Score=342.42 Aligned_cols=210 Identities=25% Similarity=0.400 Sum_probs=176.2
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||++.|+ .+++|+|+||++++||+++|+||||||||||+++|+|.. +
T Consensus 7 ~i~~~~l~~~~~---------------------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~ 58 (225)
T PRK10247 7 LLQLQNVGYLAG---------------------------DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLI-S 58 (225)
T ss_pred eEEEeccEEeeC---------------------------CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhccc-C
Confidence 589999998763 245999999999999999999999999999999999977 4
Q ss_pred CCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccc
Q 044602 149 DVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE-RCRH 223 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~ 223 (674)
+.+|+|.++|.++.. ..++.++|++|++.+++. ||+||+.+....+. .. ...++++++++.+|+. ...+
T Consensus 59 ~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~-tv~enl~~~~~~~~---~~--~~~~~~~~~l~~~~l~~~~~~ 132 (225)
T PRK10247 59 PTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRN---QQ--PDPAIFLDDLERFALPDTILT 132 (225)
T ss_pred CCCCeEEECCEEcCcCCHHHHHhccEEEecccccccc-cHHHHHHhHHhhcC---CC--hHHHHHHHHHHHcCCChHHhc
Confidence 569999999988642 356789999999988875 99999988643321 11 1234678899999996 3556
Q ss_pred ccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcC
Q 044602 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFD 302 (674)
Q Consensus 224 ~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D 302 (674)
+.+ +.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++.. + ..||
T Consensus 133 ~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~-~-~~~d 205 (225)
T PRK10247 133 KNI-----AELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDE-I-NHAD 205 (225)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHH-H-HhCC
Confidence 554 589999999999999999999999999999999999999999999998764 8999999999764 4 5699
Q ss_pred EEEEEe-CCEEEEecChh
Q 044602 303 KLLLIS-EGYPVYYGKAR 319 (674)
Q Consensus 303 ~v~~L~-~G~iv~~G~~~ 319 (674)
++++|+ ++..+.+|+++
T Consensus 206 ~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 206 KVITLQPHAGEMQEARYE 223 (225)
T ss_pred EEEEEecccchHhhhhhc
Confidence 999995 66667777664
No 248
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.5e-41 Score=347.48 Aligned_cols=219 Identities=23% Similarity=0.365 Sum_probs=180.8
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|. .+++|+|+|+++++||+++|+||||||||||+|+|+|+..+
T Consensus 10 ~l~i~~v~~~~~---------------------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 62 (264)
T PRK14243 10 VLRTENLNVYYG---------------------------SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDL 62 (264)
T ss_pred EEEEeeeEEEEC---------------------------CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 589999998773 14589999999999999999999999999999999997642
Q ss_pred ----CCccEEEECCEeCC------hhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC
Q 044602 149 ----DVKGNITYNDIPYN------PALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL 218 (674)
Q Consensus 149 ----~~~G~I~~~g~~~~------~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 218 (674)
+.+|+|.++|+++. ...++.++|++|++.+++. ||.||+.++.... ... .+..++++++++.+++
T Consensus 63 ~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~---~~~-~~~~~~~~~~l~~~~l 137 (264)
T PRK14243 63 IPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARIN---GYK-GDMDELVERSLRQAAL 137 (264)
T ss_pred cCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCccccc-cHHHHHHhhhhhc---Ccc-hHHHHHHHHHHHHhCc
Confidence 36899999998863 1346789999999988885 9999999875332 111 2234556777888887
Q ss_pred CccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHH
Q 044602 219 ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMF 298 (674)
Q Consensus 219 ~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~ 298 (674)
.+..+... +..+.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.
T Consensus 138 ~~~l~~~~-~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~ 214 (264)
T PRK14243 138 WDEVKDKL-KQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAA 214 (264)
T ss_pred hhhHHHHh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHH
Confidence 43211111 123458999999999999999999999999999999999999999999999976 689999999975 588
Q ss_pred hhcCEEEEEe---------CCEEEEecChhHHH
Q 044602 299 HMFDKLLLIS---------EGYPVYYGKARESM 322 (674)
Q Consensus 299 ~~~D~v~~L~---------~G~iv~~G~~~~~~ 322 (674)
++||++++|+ +|++++.|+++++.
T Consensus 215 ~~~d~v~~l~~~~~~~~~~~g~i~~~~~~~~~~ 247 (264)
T PRK14243 215 RVSDMTAFFNVELTEGGGRYGYLVEFDRTEKIF 247 (264)
T ss_pred HhCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence 9999999998 89999999998874
No 249
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.9e-41 Score=377.93 Aligned_cols=216 Identities=26% Similarity=0.400 Sum_probs=185.0
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++++|+ .+++|+|+||++++||+++|+||||||||||+|+|+|+. +
T Consensus 4 ~l~~~~l~~~~~---------------------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~ 55 (501)
T PRK11288 4 YLSFDGIGKTFP---------------------------GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNY-Q 55 (501)
T ss_pred eEEEeeeEEEEC---------------------------CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCC-C
Confidence 488999998773 245999999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEeCCh-----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 044602 149 DVKGNITYNDIPYNP-----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRH 223 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 223 (674)
+.+|+|.++|+++.. .+++.+|||+|++.+++.+||.||+.++............+..++++++++.+||.+..+
T Consensus 56 p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 135 (501)
T PRK11288 56 PDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPD 135 (501)
T ss_pred CCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcC
Confidence 569999999998742 246789999999999999999999998642111111234445567889999999987666
Q ss_pred ccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCE
Q 044602 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDK 303 (674)
Q Consensus 224 ~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 303 (674)
+.+ .+||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||+
T Consensus 136 ~~~-----~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~ 209 (501)
T PRK11288 136 TPL-----KYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDA 209 (501)
T ss_pred Cch-----hhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 655 489999999999999999999999999999999999999999999999878999999999975 57789999
Q ss_pred EEEEeCCEEEEecCh
Q 044602 304 LLLISEGYPVYYGKA 318 (674)
Q Consensus 304 v~~L~~G~iv~~G~~ 318 (674)
+++|++|+++..++.
T Consensus 210 i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 210 ITVFKDGRYVATFDD 224 (501)
T ss_pred EEEEECCEEEeecCc
Confidence 999999999877653
No 250
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=1.9e-40 Score=341.73 Aligned_cols=216 Identities=25% Similarity=0.338 Sum_probs=172.6
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC-CCCccEEEECCEeCCh----h-ccccEEEEccCCCCCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT-DDVKGNITYNDIPYNP----A-LKRRIGFVTQDDVLLPQL 182 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~-~~~~G~I~~~g~~~~~----~-~~~~igyv~Q~~~l~~~l 182 (674)
+++|+|+|+++++||+++|+||||||||||+++|+|+.. ++.+|+|.++|+++.. . .++.++|++|++.+++.+
T Consensus 14 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 93 (248)
T PRK09580 14 KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGV 93 (248)
T ss_pred eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccch
Confidence 458999999999999999999999999999999999852 4679999999987642 2 235699999999888888
Q ss_pred CHHHHHHHHHh-hcC--CC-CCCHHHHHHHHHHHHHHcCCCc-cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEE
Q 044602 183 TVEETLVFAAF-LRL--PG-NMNRQQKYARVQMILKELGLER-CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLL 257 (674)
Q Consensus 183 TV~e~l~~~~~-~~~--~~-~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illL 257 (674)
|+.+++.+... .+. .. .....+..+.+++.++.+++++ ..++.+. ++||||||||++|||||+.+|++|+|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LS~G~~qrv~laral~~~p~illL 169 (248)
T PRK09580 94 SNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVN----VGFSGGEKKRNDILQMAVLEPELCIL 169 (248)
T ss_pred hHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCC----CCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 88777654321 110 00 0112233456788999999963 3444331 36999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhh-cCEEEEEeCCEEEEecChhHHHHHHHhCCC
Q 044602 258 DEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHM-FDKLLLISEGYPVYYGKARESMEYFSSLGF 330 (674)
Q Consensus 258 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~-~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~ 330 (674)
||||+|||+.++..+.+.|+++++.|+|||++||++.. +... +|++++|++|++++.|+++.+ +.++..++
T Consensus 170 DEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~-~~~~~~d~i~~l~~g~i~~~g~~~~~-~~~~~~~~ 241 (248)
T PRK09580 170 DESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRI-LDYIKPDYVHVLYQGRIVKSGDFTLV-KQLEEQGY 241 (248)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHhhhCCEEEEEECCeEEEeCCHHHH-HHHHhcCC
Confidence 99999999999999999999998778999999999764 5555 899999999999999998855 34444333
No 251
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.8e-41 Score=423.95 Aligned_cols=215 Identities=22% Similarity=0.320 Sum_probs=185.5
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++|+||+|+|+. +.+++|+|+||+|+|||.+||+|+||||||||+++|.|++
T Consensus 1236 g~I~f~nVsf~Y~~-------------------------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~- 1289 (1622)
T PLN03130 1236 GSIKFEDVVLRYRP-------------------------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIV- 1289 (1622)
T ss_pred CcEEEEEEEEEeCC-------------------------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcC-
Confidence 46999999999952 1246999999999999999999999999999999999876
Q ss_pred CCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC------
Q 044602 148 DDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG------ 217 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg------ 217 (674)
++.+|+|.+||+++++ .+|+++++||||+.+|++ ||+|||.++. ..++ +++.++++..+
T Consensus 1290 ~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~~td----eei~~Al~~a~l~~~I~ 1358 (1622)
T PLN03130 1290 ELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------EHND----ADLWESLERAHLKDVIR 1358 (1622)
T ss_pred CCCCceEEECCEecccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC------CCCH----HHHHHHHHHcCcHHHHH
Confidence 5569999999999863 689999999999999998 9999998642 1222 23444444433
Q ss_pred -CCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchH
Q 044602 218 -LERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSR 296 (674)
Q Consensus 218 -L~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~ 296 (674)
+++..||.||+.+ ..||||||||++|||||+++|+||+||||||+||+++...|.+.|++.. +++|+|+++|+++.
T Consensus 1359 ~lp~GLdt~Vge~G-~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~t- 1435 (1622)
T PLN03130 1359 RNSLGLDAEVSEAG-ENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNT- 1435 (1622)
T ss_pred hCccccCccccCCC-CCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChHH-
Confidence 3678899999755 4699999999999999999999999999999999999999999999875 48999999999875
Q ss_pred HHhhcCEEEEEeCCEEEEecChhHHHH
Q 044602 297 MFHMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 297 i~~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
...||||++|++|++++.|+|+|+++
T Consensus 1436 -I~~~DrIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1436 -IIDCDRILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred -HHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 55699999999999999999999974
No 252
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=1.4e-40 Score=338.06 Aligned_cols=224 Identities=23% Similarity=0.307 Sum_probs=178.7
Q ss_pred EEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 044602 70 LKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD 149 (674)
Q Consensus 70 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~ 149 (674)
++.+|+++.|+...... ..+......++++.++.+++|+|+||++++||+++|+||||||||||+++|+|.. ++
T Consensus 1 ~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~p 74 (224)
T cd03220 1 IELENVSKSYPTYKGGS-----SSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIY-PP 74 (224)
T ss_pred CceeecceeccccccCc-----chhhhhhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CC
Confidence 35678888876432110 0011123445555566678999999999999999999999999999999999987 45
Q ss_pred CccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 044602 150 VKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGG 229 (674)
Q Consensus 150 ~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 229 (674)
.+|+|.++|++... ..+...+.+.+||+||+.+..... .....+..++++++++.++|++..++.++
T Consensus 75 ~~G~i~~~g~~~~~--------~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-- 141 (224)
T cd03220 75 DSGTVTVRGRVSSL--------LGLGGGFNPELTGRENIYLNGRLL---GLSRKEIDEKIDEIIEFSELGDFIDLPVK-- 141 (224)
T ss_pred CceEEEECCEEchh--------hcccccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCChh--
Confidence 69999999987531 111234556789999999875432 12334445678889999999888887654
Q ss_pred ccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeC
Q 044602 230 FIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISE 309 (674)
Q Consensus 230 ~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 309 (674)
+||||||||++|||+|+.+|+++||||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.+|++++|++
T Consensus 142 ---~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~ 217 (224)
T cd03220 142 ---TYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLEK 217 (224)
T ss_pred ---hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC
Confidence 89999999999999999999999999999999999999999999999877899999999975 46788999999999
Q ss_pred CEEEEec
Q 044602 310 GYPVYYG 316 (674)
Q Consensus 310 G~iv~~G 316 (674)
|++++.|
T Consensus 218 G~i~~~g 224 (224)
T cd03220 218 GKIRFDG 224 (224)
T ss_pred CEEEecC
Confidence 9998765
No 253
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-40 Score=384.51 Aligned_cols=229 Identities=24% Similarity=0.378 Sum_probs=189.9
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||++.|+...... . . ..+.+.+|+||||+|++||+++|+||||||||||+|+|+|+++
T Consensus 313 ~L~~~~l~~~y~~~~~~~--~-------------~-~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~- 375 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLL--N-------------R-VTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE- 375 (623)
T ss_pred eEEEeeeEEEEcCCCccc--c-------------c-cCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-
Confidence 589999999885210000 0 0 0012469999999999999999999999999999999999884
Q ss_pred CCccEEEECCEeCCh-------hccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 044602 149 DVKGNITYNDIPYNP-------ALKRRIGFVTQDD--VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE 219 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~-------~~~~~igyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 219 (674)
+.+|+|.++|+++.. .++++++||+|++ .+++.+||.||+.+..... ....+++..+++.++++.+||+
T Consensus 376 p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~L~~~gL~ 453 (623)
T PRK10261 376 SQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVH--GLLPGKAAAARVAWLLERVGLL 453 (623)
T ss_pred CCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHcCCC
Confidence 569999999998742 2466899999997 5899999999999865432 1112344557889999999996
Q ss_pred -ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHH
Q 044602 220 -RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRM 297 (674)
Q Consensus 220 -~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i 297 (674)
+..++.+ ++|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |.|||++|||+. .+
T Consensus 454 ~~~~~~~~-----~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v 527 (623)
T PRK10261 454 PEHAWRYP-----HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VV 527 (623)
T ss_pred HHHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH
Confidence 4566654 589999999999999999999999999999999999999999999999875 899999999975 57
Q ss_pred HhhcCEEEEEeCCEEEEecChhHHH
Q 044602 298 FHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 298 ~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.++||+|++|++|++++.|+++++.
T Consensus 528 ~~~~dri~vl~~G~iv~~g~~~~i~ 552 (623)
T PRK10261 528 ERISHRVAVMYLGQIVEIGPRRAVF 552 (623)
T ss_pred HHhCCEEEEEECCEEEEecCHHHHh
Confidence 8899999999999999999999874
No 254
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.7e-41 Score=377.65 Aligned_cols=206 Identities=22% Similarity=0.353 Sum_probs=178.2
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-----hccccEEEEccCCCCCCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-----ALKRRIGFVTQDDVLLPQLT 183 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~~l~~~lT 183 (674)
+++|+|+||++++||+++|+||||||||||+|+|+|+++ +.+|+|.++|+++.. ..++.++||+|++.+++.+|
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 89 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ-KDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRS 89 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-CCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCC
Confidence 569999999999999999999999999999999999874 569999999998742 24568999999998999999
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 044602 184 VEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSG 263 (674)
Q Consensus 184 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsg 263 (674)
|+||+.++...........++..++++++++.+|+.+..++.+ .+|||||||||+|||||+.+|++|||||||+|
T Consensus 90 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~ 164 (491)
T PRK10982 90 VMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV-----ATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSS 164 (491)
T ss_pred HHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCC
Confidence 9999987642110101133444567899999999987777765 48999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHH
Q 044602 264 LDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 264 LD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|+++..|++++.
T Consensus 165 LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 165 LTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEeecChhhC
Confidence 9999999999999999888999999999975 57789999999999999999987664
No 255
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=1.1e-40 Score=343.79 Aligned_cols=199 Identities=27% Similarity=0.427 Sum_probs=174.3
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHH
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEE 186 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e 186 (674)
+|+|+||++++||+++|+||||||||||+++|+|.. ++ +|+|.++|+++.. ..++.++|++|++.+++.+||+|
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~-~~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 88 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-PG-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQ 88 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CC-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHH
Confidence 799999999999999999999999999999999987 44 8999999998742 34567999999988888899999
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhh-------CCCEEEEeC
Q 044602 187 TLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILV-------DPSLLLLDE 259 (674)
Q Consensus 187 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~-------~P~illLDE 259 (674)
|+.+.... ....++..++++++++.+||.+..++.+ +.||||||||++|||||+. +|++|+|||
T Consensus 89 nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDE 159 (248)
T PRK03695 89 YLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRSV-----NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDE 159 (248)
T ss_pred HHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcC
Confidence 99886321 1223344567899999999987777654 4899999999999999998 679999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHH
Q 044602 260 PTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 260 PTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|+++++
T Consensus 160 Pt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 160 PMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQGKLLASGRRDEV 220 (248)
T ss_pred CcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999877999999999975 47889999999999999999998776
No 256
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.7e-41 Score=343.12 Aligned_cols=201 Identities=31% Similarity=0.465 Sum_probs=161.6
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTV 184 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV 184 (674)
+.+|+|+|+++++||+++|+||||||||||+++|+|+. ++.+|+|.++|+++.. .+++.++|++|++.+++ .||
T Consensus 14 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~-~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv 91 (236)
T cd03253 14 RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFY-DVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFN-DTI 91 (236)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccc-CCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhc-chH
Confidence 45899999999999999999999999999999999987 4569999999998742 35678999999998887 599
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHH-----HHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeC
Q 044602 185 EETLVFAAFLRLPGNMNRQQKYA-----RVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDE 259 (674)
Q Consensus 185 ~e~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDE 259 (674)
+||+.+.... ....+..+ .+.+.++.+ +...++.+. ..++.||||||||++|||||+.+|++|+|||
T Consensus 92 ~~nl~~~~~~-----~~~~~~~~~~~~~~l~~~~~~l--~~~~~~~~~-~~~~~LS~G~~~rl~la~aL~~~p~llllDE 163 (236)
T cd03253 92 GYNIRYGRPD-----ATDEEVIEAAKAAQIHDKIMRF--PDGYDTIVG-ERGLKLSGGEKQRVAIARAILKNPPILLLDE 163 (236)
T ss_pred HHHHhhcCCC-----CCHHHHHHHHHHcCcHHHHHhc--cccccchhh-cCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 9999876321 11111111 122333333 112222222 2346899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 260 PTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 260 PTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
||+|||+.+...+.+.|+++++ |+|||++||++.. + ..||++++|++|++++.|+.+++.
T Consensus 164 P~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~-~-~~~d~~~~l~~g~i~~~~~~~~~~ 223 (236)
T cd03253 164 ATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLST-I-VNADKIIVLKDGRIVERGTHEELL 223 (236)
T ss_pred CcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEEEECCEEEeeCCHHHHh
Confidence 9999999999999999999977 9999999999864 4 459999999999999999887764
No 257
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=4.6e-41 Score=340.15 Aligned_cols=194 Identities=30% Similarity=0.514 Sum_probs=162.4
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTV 184 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV 184 (674)
+.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++.. ..++.++|++|++.+++ .||
T Consensus 17 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv 94 (220)
T cd03245 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLY-KPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFY-GTL 94 (220)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-CCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCcccc-chH
Confidence 45999999999999999999999999999999999987 4569999999998642 34668999999998887 599
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc------CCccCccCHHHHHHHHHHHHHhhCCCEEEEe
Q 044602 185 EETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVG------GGFIKGISGGERKRTSIGYEILVDPSLLLLD 258 (674)
Q Consensus 185 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg------~~~~~~LSgGerqRv~iA~aL~~~P~illLD 258 (674)
.||+.+.... .. .+.++++++.+++.+..++.+. ...+.+||||||||++|||||+.+|++|+||
T Consensus 95 ~e~l~~~~~~-----~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllD 165 (220)
T cd03245 95 RDNITLGAPL-----AD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLD 165 (220)
T ss_pred HHHhhcCCCC-----CC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999875211 11 2345677888888765554321 1224589999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEec
Q 044602 259 EPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYG 316 (674)
Q Consensus 259 EPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 316 (674)
|||+|||+.++..+.+.|+++++ ++|||++||++.. + ++||++++|++|++++.|
T Consensus 166 EPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~-~-~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 166 EPTSAMDMNSEERLKERLRQLLG-DKTLIIITHRPSL-L-DLVDRIIVMDSGRIVADG 220 (220)
T ss_pred CccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHH-H-HhCCEEEEEeCCeEeecC
Confidence 99999999999999999999876 4899999999863 4 799999999999998764
No 258
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=1.5e-41 Score=386.87 Aligned_cols=199 Identities=31% Similarity=0.513 Sum_probs=169.2
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+|+|+. +.+++|+|+|++++|||.++|+||||||||||+|+|+|.. +
T Consensus 320 ~i~~~~v~f~y~~-------------------------~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~-~ 373 (529)
T TIGR02857 320 SLEFSGLSVAYPG-------------------------RRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFV-D 373 (529)
T ss_pred eEEEEEEEEECCC-------------------------CCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCC-C
Confidence 6999999998852 1246899999999999999999999999999999999977 5
Q ss_pred CCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC------
Q 044602 149 DVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL------ 218 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL------ 218 (674)
+.+|+|.+||+++++ ++|++++||+|++.+|++ |++||+.++.. ..++ +++++.++..++
T Consensus 374 ~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~-ti~~Ni~~~~~-----~~~~----~~i~~a~~~~~l~~~i~~ 443 (529)
T TIGR02857 374 PTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAG-TIAENIRLARP-----DASD----AEIRRALERAGLDEFVAA 443 (529)
T ss_pred CCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCc-CHHHHHhccCC-----CCCH----HHHHHHHHHcCcHHHHHh
Confidence 569999999998753 578899999999999987 99999998631 1222 234444444443
Q ss_pred -CccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHH
Q 044602 219 -ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRM 297 (674)
Q Consensus 219 -~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i 297 (674)
++..||.+|+.+ ..||||||||++|||||+++|++++||||||+||+.+++.+.+.|+++. +|+|+|+++|+++.
T Consensus 444 lp~Gldt~v~e~g-~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~-- 519 (529)
T TIGR02857 444 LPQGLDTLIGEGG-AGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLAL-- 519 (529)
T ss_pred Ccccccchhcccc-ccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH--
Confidence 567899998754 4699999999999999999999999999999999999999999999885 58999999999854
Q ss_pred HhhcCEEEEE
Q 044602 298 FHMFDKLLLI 307 (674)
Q Consensus 298 ~~~~D~v~~L 307 (674)
.+.||+|++|
T Consensus 520 ~~~~d~i~~l 529 (529)
T TIGR02857 520 AERADRIVVL 529 (529)
T ss_pred HHhCCEEEeC
Confidence 5789999875
No 259
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.9e-41 Score=423.16 Aligned_cols=215 Identities=24% Similarity=0.336 Sum_probs=184.9
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++|+||+|+|+. +.+++|+|+|++|+|||.+||+||||||||||+++|.|++
T Consensus 1233 g~I~f~nVsf~Y~~-------------------------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~- 1286 (1495)
T PLN03232 1233 GSIKFEDVHLRYRP-------------------------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIV- 1286 (1495)
T ss_pred CcEEEEEEEEEECC-------------------------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-
Confidence 46999999999952 2256999999999999999999999999999999999876
Q ss_pred CCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC------
Q 044602 148 DDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG------ 217 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg------ 217 (674)
++.+|+|.+||+++++ .+|++++|||||+.+|++ |++|||.++. ..++ +++.++++..+
T Consensus 1287 ~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~------~~sd----eei~~al~~a~l~~~I~ 1355 (1495)
T PLN03232 1287 ELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS------EHND----ADLWEALERAHIKDVID 1355 (1495)
T ss_pred cCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCC------CCCH----HHHHHHHHHcCCHHHHH
Confidence 5569999999999863 689999999999999998 9999997642 1222 23444455444
Q ss_pred -CCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchH
Q 044602 218 -LERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSR 296 (674)
Q Consensus 218 -L~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~ 296 (674)
+++..||.+|+.+ .+||||||||++|||||+++|+||+||||||+||++++..|.+.|++.. +++|+|+++|+++.
T Consensus 1356 ~lp~GLdt~v~e~G-~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~t- 1432 (1495)
T PLN03232 1356 RNPFGLDAEVSEGG-ENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLNT- 1432 (1495)
T ss_pred hCcCCCCceecCCC-CCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH-
Confidence 3567899998755 4699999999999999999999999999999999999999999999875 48999999999865
Q ss_pred HHhhcCEEEEEeCCEEEEecChhHHHH
Q 044602 297 MFHMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 297 i~~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
...||||++|++|++++.|+|+|+++
T Consensus 1433 -i~~~DrIlVL~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1433 -IIDCDKILVLSSGQVLEYDSPQELLS 1458 (1495)
T ss_pred -HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 55699999999999999999999863
No 260
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-40 Score=350.07 Aligned_cols=225 Identities=24% Similarity=0.407 Sum_probs=183.8
Q ss_pred ceeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 67 PIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 67 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+..++++||+++|. .+.+|+|+||++++||+++|+||||||||||+++|+|++
T Consensus 43 ~~~l~i~nl~~~~~---------------------------~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~ 95 (305)
T PRK14264 43 DAKLSVEDLDVYYG---------------------------DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMN 95 (305)
T ss_pred CceEEEEEEEEEeC---------------------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34689999998773 245899999999999999999999999999999999987
Q ss_pred CC----CCccEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCC---------CCC-HHHHH
Q 044602 147 TD----DVKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPG---------NMN-RQQKY 206 (674)
Q Consensus 147 ~~----~~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~---------~~~-~~~~~ 206 (674)
.+ +.+|+|.++|.++.. ..++.++|++|++.+++. ||+||+.++....... ... .....
T Consensus 96 ~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (305)
T PRK14264 96 DRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAED 174 (305)
T ss_pred cccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCccccc-cHHHHHHhHHhhcccccccccccccccCchHHHH
Confidence 42 469999999988642 346789999999988885 9999999875321000 011 22335
Q ss_pred HHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEE
Q 044602 207 ARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTV 286 (674)
Q Consensus 207 ~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tv 286 (674)
++++++++.+++.+...... +..+++||||||||++|||||+.+|+||||||||+|||+.++..+.+.|+++++ ++||
T Consensus 175 ~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~ti 252 (305)
T PRK14264 175 ELVERSLRQAALWDEVNDRL-DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTV 252 (305)
T ss_pred HHHHHHHHHcCCchhhhHHh-cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEE
Confidence 67888999998854332222 234568999999999999999999999999999999999999999999999976 5899
Q ss_pred EEEecCCchHHHhhcCEE-EEEeCCEEEEecChhHHH
Q 044602 287 ITTIHQPSSRMFHMFDKL-LLISEGYPVYYGKARESM 322 (674)
Q Consensus 287 i~~~H~~~~~i~~~~D~v-~~L~~G~iv~~G~~~~~~ 322 (674)
|++||++. .+.++||++ ++|++|++++.|+++++.
T Consensus 253 iivtH~~~-~i~~~~d~i~~~l~~G~i~~~g~~~~~~ 288 (305)
T PRK14264 253 VVVTHNMQ-QAARISDQTAVFLTGGELVEYDDTDKIF 288 (305)
T ss_pred EEEEcCHH-HHHHhcCEEEEEecCCEEEEeCCHHHHH
Confidence 99999975 477899997 578999999999988763
No 261
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.9e-41 Score=318.71 Aligned_cols=202 Identities=30% Similarity=0.505 Sum_probs=181.2
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETL 188 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l 188 (674)
..+|+|+|++|.+||.++++||||||||||||+++|..+ |..|+|.+||+++... -..-|.|+|++.++|.+||.||+
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~-P~~G~i~l~~r~i~gP-gaergvVFQ~~~LlPWl~~~dNv 95 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT-PSRGSIQLNGRRIEGP-GAERGVVFQNEALLPWLNVIDNV 95 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC-cccceEEECCEeccCC-CccceeEeccCccchhhHHHHHH
Confidence 459999999999999999999999999999999999885 4699999999998631 12358999999999999999999
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTS 268 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~ 268 (674)
.|+.+++ .+.+.++.+++.+.+..+||.+..++.+ -+||||||||+.|||||+.+|++|+||||+++||.-+
T Consensus 96 afgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~i-----~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~t 167 (259)
T COG4525 96 AFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYI-----WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALT 167 (259)
T ss_pred HHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccce-----EeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHH
Confidence 9999886 5788999999999999999998877655 4899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-CCcEEEEEecCCchHHHhhcCEEEEEe--CCEEEEecChhHH
Q 044602 269 ANKLIQVLQKVAK-AGRTVITTIHQPSSRMFHMFDKLLLIS--EGYPVYYGKARES 321 (674)
Q Consensus 269 ~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~--~G~iv~~G~~~~~ 321 (674)
++++.++|-++.+ .|+.++++||+..+ ..-+++++++|+ .|+++..-+++=.
T Consensus 168 Re~mQelLldlw~~tgk~~lliTH~ieE-AlflatrLvvlsp~pgRvv~~~~~df~ 222 (259)
T COG4525 168 REQMQELLLDLWQETGKQVLLITHDIEE-ALFLATRLVVLSPGPGRVVERLPLDFA 222 (259)
T ss_pred HHHHHHHHHHHHHHhCCeEEEEeccHHH-HHhhhheeEEecCCCceeeEecCCCHH
Confidence 9999999988876 59999999999764 566899999998 6899988777633
No 262
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.9e-40 Score=334.70 Aligned_cols=202 Identities=22% Similarity=0.290 Sum_probs=174.8
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++|++++++ .+.+|+|+||++++||+++|+||||||||||+|+|+|..
T Consensus 10 ~~l~~~~l~~~~~---------------------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~- 61 (214)
T PRK13543 10 PLLAAHALAFSRN---------------------------EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLL- 61 (214)
T ss_pred ceEEEeeEEEecC---------------------------CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCC-
Confidence 4689999998663 245899999999999999999999999999999999987
Q ss_pred CCCccEEEECCEeCCh-hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 044602 148 DDVKGNITYNDIPYNP-ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRV 226 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~-~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 226 (674)
++.+|+|.++|+++.. ..++.++|++|++.+++.+|+.||+.+....+. . ...+.++++++.++|.+..++.+
T Consensus 62 ~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~---~~~~~~~~~l~~~~l~~~~~~~~ 135 (214)
T PRK13543 62 HVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG---R---RAKQMPGSALAIVGLAGYEDTLV 135 (214)
T ss_pred CCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhcC---C---cHHHHHHHHHHHcCChhhccCCh
Confidence 4569999999998753 334579999999999999999999988754321 1 12345678899999988777765
Q ss_pred cCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEE
Q 044602 227 GGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLL 306 (674)
Q Consensus 227 g~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~ 306 (674)
..||||||||++|||+++.+|++++|||||+|||+.+++.+.+.|++++++|+|+|++||++. ++.++||++++
T Consensus 136 -----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~ 209 (214)
T PRK13543 136 -----RQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLT 209 (214)
T ss_pred -----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEE
Confidence 489999999999999999999999999999999999999999999999888999999999976 57899999999
Q ss_pred EeC
Q 044602 307 ISE 309 (674)
Q Consensus 307 L~~ 309 (674)
++.
T Consensus 210 l~~ 212 (214)
T PRK13543 210 LEA 212 (214)
T ss_pred Eee
Confidence 864
No 263
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-40 Score=341.90 Aligned_cols=217 Identities=24% Similarity=0.417 Sum_probs=181.0
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|+++++. .+.+|+|+||++++||+++|+||||||||||+++|+|...
T Consensus 10 ~i~~~~~~~~~~---------------------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~- 61 (257)
T PRK14246 10 VFNISRLYLYIN---------------------------DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE- 61 (257)
T ss_pred heeeeeEEEecC---------------------------CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-
Confidence 388999998763 2568999999999999999999999999999999999874
Q ss_pred CCccEEEECC------EeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC
Q 044602 149 DVKGNITYND------IPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL 218 (674)
Q Consensus 149 ~~~G~I~~~g------~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 218 (674)
+.+|+|.++| +++.. ..++.++|++|++.+++++||+||+.++.... ....+++..++++++++.+++
T Consensus 62 ~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~~~~~~l 139 (257)
T PRK14246 62 IYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSH--GIKEKREIKKIVEECLRKVGL 139 (257)
T ss_pred CCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCC
Confidence 4466555554 54421 35678999999999999999999999875432 112234455678899999999
Q ss_pred Cc----cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q 044602 219 ER----CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPS 294 (674)
Q Consensus 219 ~~----~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 294 (674)
.+ ..++ .+..||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++.
T Consensus 140 ~~~~~~~~~~-----~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~ 213 (257)
T PRK14246 140 WKEVYDRLNS-----PASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ 213 (257)
T ss_pred CccchhhhcC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH
Confidence 64 3333 3458999999999999999999999999999999999999999999999965 799999999975
Q ss_pred hHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 295 SRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 295 ~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.+.++||++++|++|+++..|+++++.
T Consensus 214 -~~~~~~d~v~~l~~g~i~~~g~~~~~~ 240 (257)
T PRK14246 214 -QVARVADYVAFLYNGELVEWGSSNEIF 240 (257)
T ss_pred -HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 467899999999999999999998764
No 264
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.9e-40 Score=376.91 Aligned_cols=208 Identities=26% Similarity=0.402 Sum_probs=177.5
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC-CCCccEEEEC-----------------------CEeC---
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT-DDVKGNITYN-----------------------DIPY--- 161 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~-~~~~G~I~~~-----------------------g~~~--- 161 (674)
+.+|+|+||++++||+++|+||||||||||+|+|+|..+ ++.+|+|.++ |.++
T Consensus 13 ~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~ 92 (520)
T TIGR03269 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPE 92 (520)
T ss_pred eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccccccccccccccccc
Confidence 469999999999999999999999999999999999863 4569999997 2221
Q ss_pred -------Ch----hccccEEEEccC-CCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 044602 162 -------NP----ALKRRIGFVTQD-DVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGG 229 (674)
Q Consensus 162 -------~~----~~~~~igyv~Q~-~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 229 (674)
.. ..++.++||+|+ +.+++.+||+||+.++.... ..+.++..++++++++.+||++..++.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~--- 166 (520)
T TIGR03269 93 EVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEGKEAVGRAVDLIEMVQLSHRITHIA--- 166 (520)
T ss_pred chhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcCc---
Confidence 01 235679999997 67888899999999875432 2334455678899999999987777655
Q ss_pred ccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecCCchHHHhhcCEEEEEe
Q 044602 230 FIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK-AGRTVITTIHQPSSRMFHMFDKLLLIS 308 (674)
Q Consensus 230 ~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~ 308 (674)
++|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++++ .|+|||++|||+. .+.++||++++|+
T Consensus 167 --~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~-~~~~~~d~i~~l~ 243 (520)
T TIGR03269 167 --RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE-VIEDLSDKAIWLE 243 (520)
T ss_pred --ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEe
Confidence 48999999999999999999999999999999999999999999999976 4899999999976 4678999999999
Q ss_pred CCEEEEecChhHHHHHH
Q 044602 309 EGYPVYYGKARESMEYF 325 (674)
Q Consensus 309 ~G~iv~~G~~~~~~~~f 325 (674)
+|++++.|+++++.+.+
T Consensus 244 ~G~i~~~g~~~~~~~~~ 260 (520)
T TIGR03269 244 NGEIKEEGTPDEVVAVF 260 (520)
T ss_pred CCEEeeecCHHHHHHHH
Confidence 99999999998876544
No 265
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-40 Score=384.25 Aligned_cols=222 Identities=22% Similarity=0.349 Sum_probs=187.7
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++++|... .+..++|+||||++++||++||+||||||||||+|+|+|+++
T Consensus 12 ~l~v~~l~~~y~~~-----------------------~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~- 67 (623)
T PRK10261 12 VLAVENLNIAFMQE-----------------------QQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE- 67 (623)
T ss_pred eEEEeceEEEecCC-----------------------CCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC-
Confidence 59999999988521 112469999999999999999999999999999999999884
Q ss_pred CCccEEEECCEeC-------------Ch----hcc-ccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHH
Q 044602 149 DVKGNITYNDIPY-------------NP----ALK-RRIGFVTQDD--VLLPQLTVEETLVFAAFLRLPGNMNRQQKYAR 208 (674)
Q Consensus 149 ~~~G~I~~~g~~~-------------~~----~~~-~~igyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~ 208 (674)
+.+|+|.++|.++ .. .++ +.||||+|++ .+++.+||.||+.++..... ..++.+..++
T Consensus 68 p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~ 145 (623)
T PRK10261 68 QAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVE 145 (623)
T ss_pred CCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHH
Confidence 4599999998643 11 122 4799999997 68888999999999865421 2345556678
Q ss_pred HHHHHHHcCCCc---cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-Cc
Q 044602 209 VQMILKELGLER---CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GR 284 (674)
Q Consensus 209 v~~~l~~lgL~~---~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~ 284 (674)
++++++.+||++ ..++. +.+|||||||||+||+||+.+|++|||||||++||+.++.++.+.|++++++ |+
T Consensus 146 ~~~~l~~~gL~~~~~~~~~~-----~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~ 220 (623)
T PRK10261 146 AKRMLDQVRIPEAQTILSRY-----PHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSM 220 (623)
T ss_pred HHHHHHHCCCCChhhHHhCC-----CccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCC
Confidence 899999999964 34444 4589999999999999999999999999999999999999999999999865 89
Q ss_pred EEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 285 TVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 285 tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
|||++|||+. .+.++||||++|++|++++.|+++++.
T Consensus 221 tvi~itHdl~-~~~~~adri~vl~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 221 GVIFITHDMG-VVAEIADRVLVMYQGEAVETGSVEQIF 257 (623)
T ss_pred EEEEEcCCHH-HHHHhCCEEEEeeCCeecccCCHHHhh
Confidence 9999999975 477899999999999999999988764
No 266
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.1e-40 Score=331.79 Aligned_cols=186 Identities=24% Similarity=0.385 Sum_probs=161.4
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh---hccccEEEEccCCCCCCCCCHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP---ALKRRIGFVTQDDVLLPQLTVE 185 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~---~~~~~igyv~Q~~~l~~~lTV~ 185 (674)
+++|+|+|+++++||+++|+||||||||||+++|+|.++ +.+|+|.++|.++.. ..++.++|++|++.+++.+||.
T Consensus 14 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~ 92 (204)
T PRK13538 14 RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR-PDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTAL 92 (204)
T ss_pred EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHH
Confidence 458999999999999999999999999999999999874 569999999998742 4567899999999999999999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 044602 186 ETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD 265 (674)
Q Consensus 186 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD 265 (674)
||+.+...... . +..++++++++.+||.+..++.+ ..||||||||++|||||+++|++++|||||+|||
T Consensus 93 e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 161 (204)
T PRK13538 93 ENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVPV-----RQLSAGQQRRVALARLWLTRAPLWILDEPFTAID 161 (204)
T ss_pred HHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 99998754321 1 23457889999999987777654 4899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEE
Q 044602 266 STSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLI 307 (674)
Q Consensus 266 ~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L 307 (674)
+.++..+.+.|++++++|+|+|++||++.. +.+..+|++.+
T Consensus 162 ~~~~~~l~~~l~~~~~~~~tiii~sh~~~~-i~~~~~~~~~~ 202 (204)
T PRK13538 162 KQGVARLEALLAQHAEQGGMVILTTHQDLP-VASDKVRKLRL 202 (204)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEecChhh-hccCCceEEec
Confidence 999999999999998778999999999764 55666677766
No 267
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=2e-40 Score=411.45 Aligned_cols=224 Identities=24% Similarity=0.365 Sum_probs=199.1
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++||+++|+. +.+.+|+|+|+.|++||+++|+||||||||||+|+|+|...
T Consensus 1936 ~~L~v~nLsK~Y~~-------------------------~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ 1990 (2272)
T TIGR01257 1936 DILRLNELTKVYSG-------------------------TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT 1990 (2272)
T ss_pred ceEEEEEEEEEECC-------------------------CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC
Confidence 45899999987741 12569999999999999999999999999999999999884
Q ss_pred CCCccEEEECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccc
Q 044602 148 DDVKGNITYNDIPYNP---ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHT 224 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~---~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 224 (674)
+++|+|.++|+++.. ..++.+||++|++.+++.+||+||+.+.+..+ +.++++.+++++++++.+||.+..|+
T Consensus 1991 -ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~---g~~~~~~~~~v~~lLe~lgL~~~~dk 2066 (2272)
T TIGR01257 1991 -VTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLR---GVPAEEIEKVANWSIQSLGLSLYADR 2066 (2272)
T ss_pred -CCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHhcC
Confidence 569999999998852 35678999999999999999999999877654 23444556678899999999988888
Q ss_pred cccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEE
Q 044602 225 RVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKL 304 (674)
Q Consensus 225 ~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v 304 (674)
+++ +|||||||||+||+||+.+|+||||||||+|||+.+++.+++.|++++++|+|||++||++. ++.++|||+
T Consensus 2067 ~~~-----~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV 2140 (2272)
T TIGR01257 2067 LAG-----TYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRL 2140 (2272)
T ss_pred Chh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEE
Confidence 765 89999999999999999999999999999999999999999999999888999999999975 688999999
Q ss_pred EEEeCCEEEEecChhHHHHHHH
Q 044602 305 LLISEGYPVYYGKARESMEYFS 326 (674)
Q Consensus 305 ~~L~~G~iv~~G~~~~~~~~f~ 326 (674)
++|++|+++..|+++++.+.|.
T Consensus 2141 ~IL~~G~i~~~Gs~q~Lk~~~g 2162 (2272)
T TIGR01257 2141 AIMVKGAFQCLGTIQHLKSKFG 2162 (2272)
T ss_pred EEEECCEEEEECCHHHHHHHhC
Confidence 9999999999999999987775
No 268
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-40 Score=377.80 Aligned_cols=207 Identities=21% Similarity=0.405 Sum_probs=176.5
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-----hccccEEEEccCC---CCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-----ALKRRIGFVTQDD---VLLP 180 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~---~l~~ 180 (674)
+++|+|+||++++||+++|+||||||||||+|+|+|.++++.+|+|.++|+++.. ..++.++||+|++ .+++
T Consensus 275 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 354 (506)
T PRK13549 275 IKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVP 354 (506)
T ss_pred cccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcC
Confidence 4699999999999999999999999999999999998754469999999988642 2356799999995 4788
Q ss_pred CCCHHHHHHHHHhhcCCC--CCCHHHHHHHHHHHHHHcCCC-ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEE
Q 044602 181 QLTVEETLVFAAFLRLPG--NMNRQQKYARVQMILKELGLE-RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLL 257 (674)
Q Consensus 181 ~lTV~e~l~~~~~~~~~~--~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illL 257 (674)
.+||.||+.++....... ...+++..++++++++.++|. +..+++++ +|||||||||+|||||+.+|++|||
T Consensus 355 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~kqrv~lA~al~~~p~lllL 429 (506)
T PRK13549 355 VMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIA-----RLSGGNQQKAVLAKCLLLNPKILIL 429 (506)
T ss_pred CCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccc-----cCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 899999998764211110 012334456789999999996 46676654 8999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHH
Q 044602 258 DEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 258 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
||||+|||+.++..+.+.|++++++|+|||++|||+. ++.++||++++|++|+++..|+++++
T Consensus 430 DEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 492 (506)
T PRK13549 430 DEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELP-EVLGLSDRVLVMHEGKLKGDLINHNL 492 (506)
T ss_pred cCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEeccccC
Confidence 9999999999999999999999888999999999975 57889999999999999999987764
No 269
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=3.6e-40 Score=375.36 Aligned_cols=223 Identities=25% Similarity=0.394 Sum_probs=186.9
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++++|+.. .+.+.+|+|+||++++||++||+||||||||||+|+|+|.+++
T Consensus 5 ~l~~~~l~~~~~~~-----------------------~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~ 61 (529)
T PRK15134 5 LLAIENLSVAFRQQ-----------------------QTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPS 61 (529)
T ss_pred eEEEeceEEEecCC-----------------------CCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 48999999988421 0124699999999999999999999999999999999998854
Q ss_pred ----CCccEEEECCEeCCh-------hcc-ccEEEEccCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 044602 149 ----DVKGNITYNDIPYNP-------ALK-RRIGFVTQDDV--LLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILK 214 (674)
Q Consensus 149 ----~~~G~I~~~g~~~~~-------~~~-~~igyv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~ 214 (674)
+.+|+|.++|+++.. ..+ +.+|||+|++. +++.+||.||+.+..... ...++.+..++++++++
T Consensus 62 ~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~ 139 (529)
T PRK15134 62 PPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLH--RGMRREAARGEILNCLD 139 (529)
T ss_pred CcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHh--cCCCHHHHHHHHHHHHH
Confidence 268999999998742 122 57999999974 677789999988654321 12344556678899999
Q ss_pred HcCCCcc---ccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEe
Q 044602 215 ELGLERC---RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTI 290 (674)
Q Consensus 215 ~lgL~~~---~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~ 290 (674)
.+||.+. .++++ .+|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++|
T Consensus 140 ~~gl~~~~~~~~~~~-----~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vt 214 (529)
T PRK15134 140 RVGIRQAAKRLTDYP-----HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFIT 214 (529)
T ss_pred HCCCCChHHHHhhCC-----cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEc
Confidence 9999752 35544 589999999999999999999999999999999999999999999999875 89999999
Q ss_pred cCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 291 HQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 291 H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
|++. .+.++||||++|++|++++.|+++++.
T Consensus 215 Hd~~-~~~~~~dri~~l~~G~i~~~g~~~~~~ 245 (529)
T PRK15134 215 HNLS-IVRKLADRVAVMQNGRCVEQNRAATLF 245 (529)
T ss_pred CcHH-HHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 9976 467899999999999999999988764
No 270
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.6e-40 Score=341.32 Aligned_cols=222 Identities=23% Similarity=0.344 Sum_probs=182.3
Q ss_pred CceeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcC
Q 044602 66 LPIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 66 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~ 145 (674)
....++++|++++|+ .+++|+|+|+++++||+++|+|+||||||||+++|+|.
T Consensus 13 ~~~~l~~~~l~~~~~---------------------------~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 65 (265)
T PRK14252 13 TQQKSEVNKLNFYYG---------------------------GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRM 65 (265)
T ss_pred CCceEEEEEEEEEEC---------------------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 345689999999774 24599999999999999999999999999999999998
Q ss_pred CCC-C---CccEEEECCEeCC--------hhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCC-HHHHHHHHHHH
Q 044602 146 LTD-D---VKGNITYNDIPYN--------PALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMN-RQQKYARVQMI 212 (674)
Q Consensus 146 ~~~-~---~~G~I~~~g~~~~--------~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~-~~~~~~~v~~~ 212 (674)
..+ + .+|+|.++|.++. ..+++.++|++|++.+++. ||+||+.++.... ... +...+++++++
T Consensus 66 ~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~---~~~~~~~~~~~~~~~ 141 (265)
T PRK14252 66 HDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIR---GVKRRSILEERVENA 141 (265)
T ss_pred cCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHc---CCChHHHHHHHHHHH
Confidence 753 1 6899999997653 1356789999999999986 9999998875322 111 22334567888
Q ss_pred HHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecC
Q 044602 213 LKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQ 292 (674)
Q Consensus 213 l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~ 292 (674)
++.+++.+...... +..+..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+
T Consensus 142 l~~~~l~~~l~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~ 219 (265)
T PRK14252 142 LRNAALWDEVKDRL-GDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHN 219 (265)
T ss_pred HHHcCCchhhhHHH-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecC
Confidence 88888743211111 123458999999999999999999999999999999999999999999999976 7999999999
Q ss_pred CchHHHhhcCEEEEEeCCEEEEecChhHH
Q 044602 293 PSSRMFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 293 ~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
+. ++.++||++++|++|++++.|+.+++
T Consensus 220 ~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 247 (265)
T PRK14252 220 MQ-QAARVSDYTAYMYMGELIEFGATDTI 247 (265)
T ss_pred HH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 75 47789999999999999999998876
No 271
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2.1e-40 Score=377.23 Aligned_cols=205 Identities=27% Similarity=0.455 Sum_probs=176.8
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-------hccccEEEEccCC--CCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-------ALKRRIGFVTQDD--VLL 179 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-------~~~~~igyv~Q~~--~l~ 179 (674)
+.+|+|+||++++||+++|+||||||||||+|+|+|++ + .+|+|.++|+++.. .+++.+|||+|++ .++
T Consensus 299 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~ 376 (529)
T PRK15134 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-N-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLN 376 (529)
T ss_pred ceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-C-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcC
Confidence 56999999999999999999999999999999999987 4 59999999988642 1356799999996 488
Q ss_pred CCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEe
Q 044602 180 PQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE-RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLD 258 (674)
Q Consensus 180 ~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLD 258 (674)
+.+||.||+.++...+. ......+..++++++++.+||. +..++.+ .+|||||||||+|||||+.+|++||||
T Consensus 377 ~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllD 450 (529)
T PRK15134 377 PRLNVLQIIEEGLRVHQ-PTLSAAQREQQVIAVMEEVGLDPETRHRYP-----AEFSGGQRQRIAIARALILKPSLIILD 450 (529)
T ss_pred CcccHHHHHHHHHHhcc-ccCChHHHHHHHHHHHHHcCCCHHHHhcCC-----ccCCHHHHHHHHHHHHHhCCCCEEEee
Confidence 88999999998753321 1123344556788999999997 4566654 489999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 259 EPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 259 EPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
|||+|||+.++..+.+.|++++++ |+|||++||++. .+.++||++++|++|++++.|+++++.
T Consensus 451 EPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 514 (529)
T PRK15134 451 EPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQGEVVEQGDCERVF 514 (529)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEEEcCHHHHh
Confidence 999999999999999999999875 899999999975 477899999999999999999988774
No 272
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=9.4e-41 Score=309.04 Aligned_cols=204 Identities=29% Similarity=0.489 Sum_probs=181.4
Q ss_pred ccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCC-------h---hccccEEEEccCC
Q 044602 107 DYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN-------P---ALKRRIGFVTQDD 176 (674)
Q Consensus 107 ~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~-------~---~~~~~igyv~Q~~ 176 (674)
+..++|.||+++.+.||.+.++||||+|||||++.|. ++.-+.+|+..+.|...+ + ++|+.+|+|+|..
T Consensus 13 g~~q~lfdi~l~~~~getlvllgpsgagkssllr~ln-lle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy 91 (242)
T COG4161 13 GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLN-LLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQY 91 (242)
T ss_pred ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHH-HHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhh
Confidence 3467899999999999999999999999999999998 555566999999876542 1 5788999999999
Q ss_pred CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEE
Q 044602 177 VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLL 256 (674)
Q Consensus 177 ~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~ill 256 (674)
.++|++||.|||.-+- ++. .++++++...++.++|+.+.|.+.+|+. +-.|||||+|||+|||||+.+|++|+
T Consensus 92 ~lwphltv~enlieap-~kv-~gl~~~qa~~~a~ellkrlrl~~~adr~-----plhlsggqqqrvaiaralmmkpqvll 164 (242)
T COG4161 92 NLWPHLTVQENLIEAP-CRV-LGLSKDQALARAEKLLKRLRLKPYADRY-----PLHLSGGQQQRVAIARALMMEPQVLL 164 (242)
T ss_pred ccCchhHHHHHHHhhh-HHH-hCCCHHHHHHHHHHHHHHhccccccccC-----ceecccchhhhHHHHHHHhcCCcEEe
Confidence 9999999999987642 222 2467888888999999999999998874 45899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChh
Q 044602 257 LDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKAR 319 (674)
Q Consensus 257 LDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 319 (674)
+||||++|||+-..++++++++++..|.|-+++||... ...+.+.+|+.|++|+||+.|+++
T Consensus 165 fdeptaaldpeitaqvv~iikel~~tgitqvivthev~-va~k~as~vvyme~g~ive~g~a~ 226 (242)
T COG4161 165 FDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVE-VARKTASRVVYMENGHIVEQGDAS 226 (242)
T ss_pred ecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehh-HHHhhhhheEeeecCeeEeecchh
Confidence 99999999999999999999999999999999999975 467889999999999999999876
No 273
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=3.3e-40 Score=329.49 Aligned_cols=180 Identities=32% Similarity=0.445 Sum_probs=154.8
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC-CCCCccEEEECCEeCCh----h-ccccEEEEccCCCCCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL-TDDVKGNITYNDIPYNP----A-LKRRIGFVTQDDVLLPQL 182 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~-~~~~~G~I~~~g~~~~~----~-~~~~igyv~Q~~~l~~~l 182 (674)
+.+|+|+|+++++||+++|+||||||||||+++|+|.. .++.+|+|.+||+++.. . .++.++|++|++.+++.+
T Consensus 13 ~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (200)
T cd03217 13 KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGV 92 (200)
T ss_pred EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCc
Confidence 45999999999999999999999999999999999984 24579999999998753 1 244699999999999988
Q ss_pred CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 044602 183 TVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTS 262 (674)
Q Consensus 183 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTs 262 (674)
|+++++. . ..+.||||||||++|||+|+.+|++++|||||+
T Consensus 93 ~~~~~l~----------------------------------~-----~~~~LS~G~~qrv~laral~~~p~illlDEPt~ 133 (200)
T cd03217 93 KNADFLR----------------------------------Y-----VNEGFSGGEKKRNEILQLLLLEPDLAILDEPDS 133 (200)
T ss_pred cHHHHHh----------------------------------h-----ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 8888660 0 013799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHh-hcCEEEEEeCCEEEEecChhHHHHHHHhCC
Q 044602 263 GLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFH-MFDKLLLISEGYPVYYGKARESMEYFSSLG 329 (674)
Q Consensus 263 gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~-~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g 329 (674)
|||+.++..+.+.|++++++|+|+|++||++. .+.+ .||++++|++|++++.|+. ++.+.|...|
T Consensus 134 ~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~~G~i~~~~~~-~~~~~~~~~~ 199 (200)
T cd03217 134 GLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVLYDGRIVKSGDK-ELALEIEKKG 199 (200)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEECCEEEEEccH-HHHhhhcccc
Confidence 99999999999999999877899999999986 4555 7999999999999999944 4655554433
No 274
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=4.4e-40 Score=373.99 Aligned_cols=204 Identities=26% Similarity=0.415 Sum_probs=174.1
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEEC-CEe---CCh-------hccccEEEEccCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN-DIP---YNP-------ALKRRIGFVTQDDV 177 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~-g~~---~~~-------~~~~~igyv~Q~~~ 177 (674)
+.+|+|+||++++||+++|+||||||||||+|+|+|.++ +.+|+|.++ |.+ +.. ..++.+|||+|++.
T Consensus 297 ~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~-p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~ 375 (520)
T TIGR03269 297 VKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE-PTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYD 375 (520)
T ss_pred ceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcc
Confidence 469999999999999999999999999999999999874 569999996 532 211 23567999999998
Q ss_pred CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-----cccccccCCccCccCHHHHHHHHHHHHHhhCC
Q 044602 178 LLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER-----CRHTRVGGGFIKGISGGERKRTSIGYEILVDP 252 (674)
Q Consensus 178 l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P 252 (674)
+++.+||.||+.+..... ...++.+++++++++.+||.+ ..++++ .+|||||||||+|||||+.+|
T Consensus 376 l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-----~~LSgGq~qrv~laral~~~p 446 (520)
T TIGR03269 376 LYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKYP-----DELSEGERHRVALAQVLIKEP 446 (520)
T ss_pred cCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCCh-----hhCCHHHHHHHHHHHHHhcCC
Confidence 999999999998764321 223334567889999999975 345544 589999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHHH
Q 044602 253 SLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 253 ~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
++|||||||+|||+.++..+++.|++++++ |+|||++|||+. .+.++||++++|++|++++.|+++++.+
T Consensus 447 ~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 447 RIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAALMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999765 899999999975 5788999999999999999999887643
No 275
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=3.1e-40 Score=329.90 Aligned_cols=183 Identities=26% Similarity=0.424 Sum_probs=161.4
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCC---hhccccEEEEccCCCCCCCCCHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN---PALKRRIGFVTQDDVLLPQLTVE 185 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~---~~~~~~igyv~Q~~~l~~~lTV~ 185 (674)
+.+|+|+|+++++||+++|+|+||||||||+++|+|.. ++.+|+|.++|.++. ..+++.++|++|++.+++.+||+
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 91 (201)
T cd03231 13 RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLS-PPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVL 91 (201)
T ss_pred ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHH
Confidence 46899999999999999999999999999999999987 456999999998864 24567899999999998889999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 044602 186 ETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD 265 (674)
Q Consensus 186 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD 265 (674)
||+.+.... . ..++++++++.+||.+..++.+ .+||||||||++|||||+.+|++++|||||+|||
T Consensus 92 e~l~~~~~~------~---~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~~LD 157 (201)
T cd03231 92 ENLRFWHAD------H---SDEQVEEALARVGLNGFEDRPV-----AQLSAGQQRRVALARLLLSGRPLWILDEPTTALD 157 (201)
T ss_pred HHHHhhccc------c---cHHHHHHHHHHcCChhhhcCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence 999875311 1 2356789999999987777654 4899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEE
Q 044602 266 STSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLI 307 (674)
Q Consensus 266 ~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L 307 (674)
+.++..+.+.|++++++|+|+|++||++.. ....+|+++++
T Consensus 158 ~~~~~~l~~~l~~~~~~g~tiii~sH~~~~-~~~~~~~~~~~ 198 (201)
T cd03231 158 KAGVARFAEAMAGHCARGGMVVLTTHQDLG-LSEAGARELDL 198 (201)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCchh-hhhccceeEec
Confidence 999999999999988779999999999764 67789999887
No 276
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.2e-40 Score=322.07 Aligned_cols=158 Identities=37% Similarity=0.618 Sum_probs=145.2
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh---hccccEEEEccCCCCCCCCCHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP---ALKRRIGFVTQDDVLLPQLTVE 185 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~---~~~~~igyv~Q~~~l~~~lTV~ 185 (674)
+++|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. ..++.++|++|++.+++.+||.
T Consensus 13 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 91 (173)
T cd03230 13 KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLL-KPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVR 91 (173)
T ss_pred eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHH
Confidence 35899999999999999999999999999999999987 4569999999998753 4567899999999999989999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 044602 186 ETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD 265 (674)
Q Consensus 186 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD 265 (674)
||+. ||||||||++|||||+.+|++++|||||+|||
T Consensus 92 ~~~~--------------------------------------------LS~G~~qrv~laral~~~p~illlDEPt~~LD 127 (173)
T cd03230 92 ENLK--------------------------------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLD 127 (173)
T ss_pred HHhh--------------------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCC
Confidence 9873 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEE
Q 044602 266 STSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYP 312 (674)
Q Consensus 266 ~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 312 (674)
+.++..+.+.|++++++|.|+|++||++. ++.+.||++++|++|++
T Consensus 128 ~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 128 PESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNNGRI 173 (173)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeCCCC
Confidence 99999999999999877899999999975 57779999999999974
No 277
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.2e-40 Score=359.84 Aligned_cols=216 Identities=27% Similarity=0.438 Sum_probs=194.4
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++|++++|+ ..++|+||||++++||++||+|.||||||||+|+|+|.+
T Consensus 7 ~ll~~~~i~K~Fg---------------------------gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~- 58 (500)
T COG1129 7 PLLELRGISKSFG---------------------------GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVY- 58 (500)
T ss_pred ceeeeecceEEcC---------------------------CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcc-
Confidence 3588999998774 356999999999999999999999999999999999987
Q ss_pred CCCccEEEECCEeCCh-----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcC-CCCCCHHHHHHHHHHHHHHcCCCcc
Q 044602 148 DDVKGNITYNDIPYNP-----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRL-PGNMNRQQKYARVQMILKELGLERC 221 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~-~~~~~~~~~~~~v~~~l~~lgL~~~ 221 (674)
++++|+|.+||++... .....|+.|+|+..|+|+|||.|||.++...+. ..-+++++..+++.++|+.+|+...
T Consensus 59 ~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~ 138 (500)
T COG1129 59 PPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDID 138 (500)
T ss_pred cCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCC
Confidence 4679999999998751 356689999999999999999999998865443 2346778888999999999999655
Q ss_pred ccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhc
Q 044602 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMF 301 (674)
Q Consensus 222 ~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~ 301 (674)
.+++|+ +||+||||.|.|||||..+++||+||||||+|+......+.+.+++|+++|.++|++||.+. +++++|
T Consensus 139 ~~~~v~-----~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~ 212 (500)
T COG1129 139 PDTLVG-----DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIA 212 (500)
T ss_pred hhhhhh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhc
Confidence 888876 89999999999999999999999999999999999999999999999999999999999975 799999
Q ss_pred CEEEEEeCCEEEEecC
Q 044602 302 DKLLLISEGYPVYYGK 317 (674)
Q Consensus 302 D~v~~L~~G~iv~~G~ 317 (674)
|||.||.||+.+..++
T Consensus 213 DritVlRDG~~v~~~~ 228 (500)
T COG1129 213 DRITVLRDGRVVGTRP 228 (500)
T ss_pred CEEEEEeCCEEeeecc
Confidence 9999999999998887
No 278
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1e-40 Score=417.13 Aligned_cols=215 Identities=20% Similarity=0.303 Sum_probs=184.9
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++|+||+|+|+. +.+++|+|+|++|+|||.+||+|+||||||||+++|.|++
T Consensus 1283 g~I~f~nVsf~Y~~-------------------------~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~- 1336 (1522)
T TIGR00957 1283 GRVEFRNYCLRYRE-------------------------DLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRIN- 1336 (1522)
T ss_pred CcEEEEEEEEEeCC-------------------------CCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-
Confidence 46999999999962 1246999999999999999999999999999999999876
Q ss_pred CCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC-----
Q 044602 148 DDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL----- 218 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL----- 218 (674)
++.+|+|.+||+++++ .+|++++|||||+.+|++ |++|||.... ..++ +.+.++++..++
T Consensus 1337 ~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~~sd----eei~~al~~a~l~~~I~ 1405 (1522)
T TIGR00957 1337 ESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS------QYSD----EEVWWALELAHLKTFVS 1405 (1522)
T ss_pred cCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc------CCCH----HHHHHHHHHcCcHHHHh
Confidence 5569999999999864 689999999999999998 9999997321 1233 234445555443
Q ss_pred --CccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchH
Q 044602 219 --ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSR 296 (674)
Q Consensus 219 --~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~ 296 (674)
++..|+.||+.+ ..||||||||++|||||+++|+||+||||||+||+++...|.+.|++.. +++|+|+++|+++.
T Consensus 1406 ~lp~GLdt~v~e~G-~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~t- 1482 (1522)
T TIGR00957 1406 ALPDKLDHECAEGG-ENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLNT- 1482 (1522)
T ss_pred hCccCCCceecCCC-CcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-
Confidence 567899998754 4699999999999999999999999999999999999999999999875 48999999999865
Q ss_pred HHhhcCEEEEEeCCEEEEecChhHHHH
Q 044602 297 MFHMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 297 i~~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
...||||++|++|++++.|+|+|+++
T Consensus 1483 -i~~~DrIlVld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1483 -IMDYTRVIVLDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred -HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 56799999999999999999999874
No 279
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=1.3e-40 Score=338.39 Aligned_cols=211 Identities=25% Similarity=0.447 Sum_probs=170.2
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++|++++|+.. +.+.+|+|+|+++++||+++|+||||||||||+++|+|..
T Consensus 10 ~~l~~~~l~~~~~~~------------------------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~- 64 (226)
T cd03248 10 GIVKFQNVTFAYPTR------------------------PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFY- 64 (226)
T ss_pred ceEEEEEEEEEeCCC------------------------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-
Confidence 348999999988521 1135899999999999999999999999999999999987
Q ss_pred CCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHc--CCCcc
Q 044602 148 DDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKEL--GLERC 221 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l--gL~~~ 221 (674)
++.+|+|.++|+++.. ..++.++|++|++.+++. ||+||+.++..........+......++++++.+ |+.+.
T Consensus 65 ~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~-tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~ 143 (226)
T cd03248 65 QPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFAR-SLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTE 143 (226)
T ss_pred CCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHhh-hHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccch
Confidence 4569999999987642 346689999999988874 9999998754211000000111122356788888 77665
Q ss_pred ccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhc
Q 044602 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMF 301 (674)
Q Consensus 222 ~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~ 301 (674)
.++. +++||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||++.. + ..|
T Consensus 144 ~~~~-----~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~-~~~ 215 (226)
T cd03248 144 VGEK-----GSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLST-V-ERA 215 (226)
T ss_pred hhcC-----CCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHHH-H-HhC
Confidence 5554 458999999999999999999999999999999999999999999999875 6999999999864 5 459
Q ss_pred CEEEEEeCCEE
Q 044602 302 DKLLLISEGYP 312 (674)
Q Consensus 302 D~v~~L~~G~i 312 (674)
|++++|++|++
T Consensus 216 d~i~~l~~g~i 226 (226)
T cd03248 216 DQILVLDGGRI 226 (226)
T ss_pred CEEEEecCCcC
Confidence 99999999974
No 280
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-39 Score=334.56 Aligned_cols=230 Identities=23% Similarity=0.314 Sum_probs=185.5
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
+.++++||+..|+..+.. ..+ . ........+ ...+.+|+|+|+++++||+++|+||||||||||+++|+|.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~--~~~---~-~~~~~~~~~-~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~- 74 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTN--KER---M-KDALIPKHK-NKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSL- 74 (264)
T ss_pred ceEEEeeeEEEEEecccc--hHH---H-HHHhhhhcc-CCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-
Confidence 568999999888653211 000 0 000111111 13357999999999999999999999999999999999987
Q ss_pred CCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc
Q 044602 148 DDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVG 227 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 227 (674)
++.+|+|.++|. +++++|+..+.+.+||.||+.+..... ....++..+.++++++.++|.+..++.+
T Consensus 75 ~p~~G~I~~~g~---------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~- 141 (264)
T PRK13546 75 SPTVGKVDRNGE---------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQPV- 141 (264)
T ss_pred CCCceEEEECCE---------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCc-
Confidence 456999999985 456778877788899999998765332 2234444556788899999988777654
Q ss_pred CCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEE
Q 044602 228 GGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLI 307 (674)
Q Consensus 228 ~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L 307 (674)
++||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||++. .+.+.||++++|
T Consensus 142 ----~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l 216 (264)
T PRK13546 142 ----KKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWI 216 (264)
T ss_pred ----ccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEE
Confidence 489999999999999999999999999999999999999999999999877999999999975 477889999999
Q ss_pred eCCEEEEecChhHHHH
Q 044602 308 SEGYPVYYGKARESME 323 (674)
Q Consensus 308 ~~G~iv~~G~~~~~~~ 323 (674)
++|++++.|+++++.+
T Consensus 217 ~~G~i~~~g~~~~~~~ 232 (264)
T PRK13546 217 EGGKLKDYGELDDVLP 232 (264)
T ss_pred ECCEEEEeCCHHHHHH
Confidence 9999999999988754
No 281
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=4.3e-40 Score=333.34 Aligned_cols=207 Identities=26% Similarity=0.391 Sum_probs=169.7
Q ss_pred EEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 044602 70 LKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD 149 (674)
Q Consensus 70 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~ 149 (674)
++++|++++++. +.+.+|+|+||++++||+++|+||||||||||+++|+|.. ++
T Consensus 3 l~~~~l~~~~~~-------------------------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~ 56 (221)
T cd03244 3 IEFKNVSLRYRP-------------------------NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLV-EL 56 (221)
T ss_pred EEEEEEEEecCC-------------------------CCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCC-CC
Confidence 789999987741 1246999999999999999999999999999999999987 45
Q ss_pred CccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc--
Q 044602 150 VKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRH-- 223 (674)
Q Consensus 150 ~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-- 223 (674)
.+|+|.++|.++.. .+++.++|++|++.+++. ||+||+.+... .. .+++.+.++.+++.+..+
T Consensus 57 ~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~-tv~enl~~~~~------~~----~~~~~~~~~~~~l~~~~~~l 125 (221)
T cd03244 57 SSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSG-TIRSNLDPFGE------YS----DEELWQALERVGLKEFVESL 125 (221)
T ss_pred CCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccc-hHHHHhCcCCC------CC----HHHHHHHHHHhCcHHHHHhc
Confidence 69999999998742 457789999999988875 99999975321 11 123455566666544322
Q ss_pred -----ccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHH
Q 044602 224 -----TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMF 298 (674)
Q Consensus 224 -----~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~ 298 (674)
+.. +..+..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ ++|||++||++.. +.
T Consensus 126 ~~~l~~~~-~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~~ 202 (221)
T cd03244 126 PGGLDTVV-EEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLDT-II 202 (221)
T ss_pred cccccccc-ccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHH-Hh
Confidence 222 124568999999999999999999999999999999999999999999999864 7899999999864 44
Q ss_pred hhcCEEEEEeCCEEEEecC
Q 044602 299 HMFDKLLLISEGYPVYYGK 317 (674)
Q Consensus 299 ~~~D~v~~L~~G~iv~~G~ 317 (674)
.||++++|++|++++.|+
T Consensus 203 -~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 203 -DSDRILVLDKGRVVEFDS 220 (221)
T ss_pred -hCCEEEEEECCeEEecCC
Confidence 599999999999998876
No 282
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=8.8e-40 Score=337.60 Aligned_cols=202 Identities=27% Similarity=0.436 Sum_probs=172.8
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|+ .+.+|+|+||++++||+++|+||||||||||+++|+|+++
T Consensus 4 ~l~~~~l~~~~~---------------------------~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~- 55 (251)
T PRK09544 4 LVSLENVSVSFG---------------------------QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA- 55 (251)
T ss_pred EEEEeceEEEEC---------------------------CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-
Confidence 488999998773 2459999999999999999999999999999999999874
Q ss_pred CCccEEEECCEeCChhccccEEEEccCCCCCCC--CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 044602 149 DVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQ--LTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRV 226 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~--lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 226 (674)
+.+|+|.++| +..++|++|++.+++. .|+.+++.+.. ... .+++.++++.+||.+..++.+
T Consensus 56 p~~G~i~~~~-------~~~i~~v~q~~~~~~~l~~~~~~~~~~~~------~~~----~~~~~~~l~~~gl~~~~~~~~ 118 (251)
T PRK09544 56 PDEGVIKRNG-------KLRIGYVPQKLYLDTTLPLTVNRFLRLRP------GTK----KEDILPALKRVQAGHLIDAPM 118 (251)
T ss_pred CCceEEEECC-------ccCEEEeccccccccccChhHHHHHhccc------ccc----HHHHHHHHHHcCChHHHhCCh
Confidence 5699999987 2469999999887775 37888765421 111 245778999999988777654
Q ss_pred cCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEE
Q 044602 227 GGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLL 305 (674)
Q Consensus 227 g~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~ 305 (674)
..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||+++
T Consensus 119 -----~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~ 192 (251)
T PRK09544 119 -----QKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVL 192 (251)
T ss_pred -----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEE
Confidence 489999999999999999999999999999999999999999999999875 899999999975 5778999999
Q ss_pred EEeCCEEEEecChhHHH
Q 044602 306 LISEGYPVYYGKARESM 322 (674)
Q Consensus 306 ~L~~G~iv~~G~~~~~~ 322 (674)
+|++ ++++.|+++++.
T Consensus 193 ~l~~-~i~~~g~~~~~~ 208 (251)
T PRK09544 193 CLNH-HICCSGTPEVVS 208 (251)
T ss_pred EECC-ceEeeCCHHHHh
Confidence 9965 799999988763
No 283
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=1.3e-39 Score=330.55 Aligned_cols=209 Identities=26% Similarity=0.419 Sum_probs=170.5
Q ss_pred EEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 044602 70 LKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD 149 (674)
Q Consensus 70 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~ 149 (674)
++++|++++|+..... ...+.+|+|+||++++||+++|+||||||||||+++|+|.++ +
T Consensus 2 l~~~~l~~~~~~~~~~--------------------~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-~ 60 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQG--------------------GVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL-P 60 (224)
T ss_pred EEEEeeEEEeecccCC--------------------CcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-C
Confidence 6889999988531100 012469999999999999999999999999999999999874 5
Q ss_pred CccEEEEC--CE--eCCh-------hc-cccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC
Q 044602 150 VKGNITYN--DI--PYNP-------AL-KRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG 217 (674)
Q Consensus 150 ~~G~I~~~--g~--~~~~-------~~-~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 217 (674)
.+|+|.++ |. ++.. .. ++.++|++|++.+++.+||.||+.+..... .....+..+++.++++.+|
T Consensus 61 ~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~ 137 (224)
T TIGR02324 61 DSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLN 137 (224)
T ss_pred CCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcC
Confidence 69999998 43 3321 12 357999999999999999999998865332 2233444567889999999
Q ss_pred CCcc-ccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchH
Q 044602 218 LERC-RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSR 296 (674)
Q Consensus 218 L~~~-~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~ 296 (674)
|.+. .+..+ .+||||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. .
T Consensus 138 l~~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~ 211 (224)
T TIGR02324 138 IPERLWHLPP-----ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-V 211 (224)
T ss_pred CchhhhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-H
Confidence 9763 35443 589999999999999999999999999999999999999999999999877999999999954 4
Q ss_pred HHhhcCEEEEEe
Q 044602 297 MFHMFDKLLLIS 308 (674)
Q Consensus 297 i~~~~D~v~~L~ 308 (674)
+.++||+++.+.
T Consensus 212 ~~~~~d~i~~~~ 223 (224)
T TIGR02324 212 RELVADRVMDVT 223 (224)
T ss_pred HHHhcceeEecC
Confidence 667899998764
No 284
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=9.3e-40 Score=325.59 Aligned_cols=182 Identities=27% Similarity=0.405 Sum_probs=157.4
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh---hccccEEEEccCCCCCCCCCHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP---ALKRRIGFVTQDDVLLPQLTVE 185 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~---~~~~~igyv~Q~~~l~~~lTV~ 185 (674)
+.+|+|+||++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. ..++.++|++|++.+++.+||.
T Consensus 13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 91 (198)
T TIGR01189 13 RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLL-RPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSAL 91 (198)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHH
Confidence 46999999999999999999999999999999999987 4569999999998642 3457899999999899989999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 044602 186 ETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD 265 (674)
Q Consensus 186 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD 265 (674)
||+.+...... . + .++++++++.+||.+..++.++ +||||||||++||||++.+|++++|||||+|||
T Consensus 92 ~~l~~~~~~~~----~--~-~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~llllDEPt~~LD 159 (198)
T TIGR01189 92 ENLHFWAAIHG----G--A-QRTIEDALAAVGLTGFEDLPAA-----QLSAGQQRRLALARLWLSRAPLWILDEPTTALD 159 (198)
T ss_pred HHHHHHHHHcC----C--c-HHHHHHHHHHcCCHHHhcCChh-----hcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence 99988654321 1 1 3467889999999887777654 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEE
Q 044602 266 STSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLL 306 (674)
Q Consensus 266 ~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~ 306 (674)
+.++..+.+.|++++++|+|+|++||++.. -.+++++.
T Consensus 160 ~~~~~~l~~~l~~~~~~~~tii~~sH~~~~---~~~~~~~~ 197 (198)
T TIGR01189 160 KAGVALLAGLLRAHLARGGIVLLTTHQDLG---LVEARELR 197 (198)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEEccccc---ccceEEee
Confidence 999999999999998789999999999854 34577654
No 285
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=5.5e-40 Score=371.56 Aligned_cols=205 Identities=22% Similarity=0.415 Sum_probs=174.7
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-----hccccEEEEccCC---CCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-----ALKRRIGFVTQDD---VLLP 180 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~---~l~~ 180 (674)
+.+|+|+||++++||+++|+||||||||||+|+|+|..+++.+|+|.++|+++.. ..++++|||+|+. .+++
T Consensus 273 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~ 352 (500)
T TIGR02633 273 RKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVP 352 (500)
T ss_pred ccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCC
Confidence 4699999999999999999999999999999999998854469999999988742 3467899999995 5889
Q ss_pred CCCHHHHHHHHHhhcCC--CCCCHHHHHHHHHHHHHHcCCCc-cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEE
Q 044602 181 QLTVEETLVFAAFLRLP--GNMNRQQKYARVQMILKELGLER-CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLL 257 (674)
Q Consensus 181 ~lTV~e~l~~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illL 257 (674)
.+||+||+.++...... ......+.+++++++++.++|.+ ..+++++ .|||||||||+|||+|+.+|++|||
T Consensus 353 ~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGqkqrv~la~al~~~p~lllL 427 (500)
T TIGR02633 353 ILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIG-----RLSGGNQQKAVLAKMLLTNPRVLIL 427 (500)
T ss_pred CCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccc-----cCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 99999999886421110 01223344567889999999964 4676654 8999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChh
Q 044602 258 DEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKAR 319 (674)
Q Consensus 258 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 319 (674)
||||+|||+.++..+.+.|++++++|+|||++|||+. ++.++||++++|++|+++..++.+
T Consensus 428 DEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~v~~l~~G~i~~~~~~~ 488 (500)
T TIGR02633 428 DEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSDRVLVIGEGKLKGDFVNH 488 (500)
T ss_pred cCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEEccc
Confidence 9999999999999999999999888999999999975 578899999999999999877654
No 286
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=2.1e-40 Score=413.69 Aligned_cols=215 Identities=27% Similarity=0.378 Sum_probs=185.1
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..|+|+||+|+|+. +.+.+|+||||+|+|||.+||+|+||||||||+++|.|++
T Consensus 1307 G~I~f~nVsf~Y~~-------------------------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~- 1360 (1560)
T PTZ00243 1307 GSLVFEGVQMRYRE-------------------------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMV- 1360 (1560)
T ss_pred CeEEEEEEEEEeCC-------------------------CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-
Confidence 36999999999852 1245999999999999999999999999999999999877
Q ss_pred CCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC-----
Q 044602 148 DDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL----- 218 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL----- 218 (674)
++.+|+|++||+++++ ++|+.+||||||+.+|++ ||+|||.... ..++ +.+.++++..||
T Consensus 1361 ~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~~------~~sd----eeI~~Al~~a~l~~~I~ 1429 (1560)
T PTZ00243 1361 EVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPFL------EASS----AEVWAALELVGLRERVA 1429 (1560)
T ss_pred CCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccc-cHHHHhCccc------CCCH----HHHHHHHHHCCChHHHh
Confidence 4569999999999863 689999999999999998 9999996421 2232 345566665554
Q ss_pred --CccccccccCCccCccCHHHHHHHHHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCch
Q 044602 219 --ERCRHTRVGGGFIKGISGGERKRTSIGYEILVD-PSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSS 295 (674)
Q Consensus 219 --~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~-P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 295 (674)
++..||.||+.+ ..||||||||++|||||+++ |+||+||||||+||+++...|.+.|++.. +++|+|+|+|+++.
T Consensus 1430 ~lp~Gldt~vge~G-~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~t 1507 (1560)
T PTZ00243 1430 SESEGIDSRVLEGG-SNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLHT 1507 (1560)
T ss_pred hCcccccccccCCc-CcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHHH
Confidence 567899998755 46999999999999999996 89999999999999999999999999864 48999999999864
Q ss_pred HHHhhcCEEEEEeCCEEEEecChhHHHH
Q 044602 296 RMFHMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 296 ~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
...||+|++|++|++++.|+|+|+++
T Consensus 1508 --i~~~DrIlVLd~G~VvE~Gt~~eLl~ 1533 (1560)
T PTZ00243 1508 --VAQYDKIIVMDHGAVAEMGSPRELVM 1533 (1560)
T ss_pred --HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 67799999999999999999999863
No 287
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.1e-40 Score=371.97 Aligned_cols=202 Identities=21% Similarity=0.438 Sum_probs=172.5
Q ss_pred cceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-----hccccEEEEccC---CCCCCC
Q 044602 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-----ALKRRIGFVTQD---DVLLPQ 181 (674)
Q Consensus 110 ~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-----~~~~~igyv~Q~---~~l~~~ 181 (674)
.+|+|+||++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|+++.. ..++.+|||+|+ ..+++.
T Consensus 277 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 355 (510)
T PRK09700 277 KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK-RAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPN 355 (510)
T ss_pred CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc-CCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCC
Confidence 48999999999999999999999999999999999874 569999999988642 245679999998 468899
Q ss_pred CCHHHHHHHHHhhc---CCC--C-CCHHHHHHHHHHHHHHcCCC-ccccccccCCccCccCHHHHHHHHHHHHHhhCCCE
Q 044602 182 LTVEETLVFAAFLR---LPG--N-MNRQQKYARVQMILKELGLE-RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSL 254 (674)
Q Consensus 182 lTV~e~l~~~~~~~---~~~--~-~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~i 254 (674)
+||.||+.++...+ ... . ....+..++++++++.+||. +..++.++ +|||||||||+|||+|+.+|+|
T Consensus 356 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~qrv~lAral~~~p~l 430 (510)
T PRK09700 356 FSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNIT-----ELSGGNQQKVLISKWLCCCPEV 430 (510)
T ss_pred CcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccc-----cCChHHHHHHHHHHHHhcCCCE
Confidence 99999998763211 000 0 12233345678999999996 67777654 8999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecCh
Q 044602 255 LLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKA 318 (674)
Q Consensus 255 llLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 318 (674)
|||||||+|||+.++..+.+.|++++++|+|||++|||+. .+.++||++++|++|+++..++.
T Consensus 431 LlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 431 IIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP-EIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred EEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEECCEEEEEecC
Confidence 9999999999999999999999999888999999999975 57889999999999999988866
No 288
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=7.7e-40 Score=339.34 Aligned_cols=215 Identities=25% Similarity=0.361 Sum_probs=172.2
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++|++++|+. ..+.+|+|+||++++||+++|+|+||||||||+++|+|+.
T Consensus 18 ~~i~~~~l~~~~~~-------------------------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~- 71 (257)
T cd03288 18 GEIKIHDLCVRYEN-------------------------NLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMV- 71 (257)
T ss_pred ceEEEEEEEEEeCC-------------------------CCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHccc-
Confidence 35899999998742 1245899999999999999999999999999999999987
Q ss_pred CCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHH-----HHHHHHHHHHc--
Q 044602 148 DDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQK-----YARVQMILKEL-- 216 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~-----~~~v~~~l~~l-- 216 (674)
++.+|+|.++|+++.. ..++.++|++|++.+++. |++||+.... ....... ...+++.++.+
T Consensus 72 ~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~------~~~~~~~~~~l~~~~l~~~~~~~~~ 144 (257)
T cd03288 72 DIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSG-SIRFNLDPEC------KCTDDRLWEALEIAQLKNMVKSLPG 144 (257)
T ss_pred CCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCccccc-HHHHhcCcCC------CCCHHHHHHHHHHhCcHHHHhhccc
Confidence 4569999999998753 457789999999988875 9999985421 0111110 01123334443
Q ss_pred CCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchH
Q 044602 217 GLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSR 296 (674)
Q Consensus 217 gL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~ 296 (674)
|++ +.++ .....||||||||++|||||+.+|++|+|||||+|||+.++..+.+.++++. +++|+|++||++..
T Consensus 145 ~l~----~~~~-~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~- 217 (257)
T cd03288 145 GLD----AVVT-EGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVST- 217 (257)
T ss_pred ccC----cEec-cCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChHH-
Confidence 333 3232 2346899999999999999999999999999999999999999999999875 48999999999875
Q ss_pred HHhhcCEEEEEeCCEEEEecChhHHHH
Q 044602 297 MFHMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 297 i~~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
+. .||++++|++|++++.|+++++.+
T Consensus 218 ~~-~~dri~~l~~G~i~~~g~~~~~~~ 243 (257)
T cd03288 218 IL-DADLVLVLSRGILVECDTPENLLA 243 (257)
T ss_pred HH-hCCEEEEEECCEEEEeCCHHHHHh
Confidence 44 499999999999999999987753
No 289
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=1e-39 Score=323.11 Aligned_cols=176 Identities=31% Similarity=0.551 Sum_probs=152.4
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh------hccccEEEEccCC--CCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP------ALKRRIGFVTQDD--VLLP 180 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~------~~~~~igyv~Q~~--~l~~ 180 (674)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.. .+++.++|++|++ .+++
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 83 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR-PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFA 83 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceeEEECCEEccccccchHHHHhhEEEEecChhhcccc
Confidence 569999999999999999999999999999999999874 569999999998631 3466899999997 3454
Q ss_pred CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 044602 181 QLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEP 260 (674)
Q Consensus 181 ~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEP 260 (674)
.||+||+.+..... ....++..++++++++.+||.+..++.+ .+||||||||++|||||+.+|++++||||
T Consensus 84 -~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEP 154 (190)
T TIGR01166 84 -ADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLLDEP 154 (190)
T ss_pred -ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 69999999875422 1234445567889999999988777765 48999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q 044602 261 TSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPS 294 (674)
Q Consensus 261 TsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 294 (674)
|+|||+.++..+.+.|++++++|+|||++||++.
T Consensus 155 t~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 155 TAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 9999999999999999999878999999999974
No 290
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.2e-39 Score=325.30 Aligned_cols=181 Identities=26% Similarity=0.385 Sum_probs=156.7
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh---hccccEEEEccCCCCCCCCCHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP---ALKRRIGFVTQDDVLLPQLTVE 185 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~---~~~~~igyv~Q~~~l~~~lTV~ 185 (674)
+++|+|+|+++++||+++|+||||||||||+++|+|+. ++.+|+|.++|+++.. ..+++++|++|++.+++.+||+
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 92 (200)
T PRK13540 14 QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLL-NPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLR 92 (200)
T ss_pred eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHH
Confidence 45999999999999999999999999999999999987 4569999999988742 4567899999999888889999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 044602 186 ETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD 265 (674)
Q Consensus 186 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD 265 (674)
||+.+..... .. ..+++++++.+++.+..++.++ +||||||||++||||++.+|++|+|||||+|||
T Consensus 93 ~~~~~~~~~~------~~--~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~~rv~laral~~~p~~lilDEP~~~LD 159 (200)
T PRK13540 93 ENCLYDIHFS------PG--AVGITELCRLFSLEHLIDYPCG-----LLSSGQKRQVALLRLWMSKAKLWLLDEPLVALD 159 (200)
T ss_pred HHHHHHHhcC------cc--hHHHHHHHHHcCCchhhhCChh-----hcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccC
Confidence 9999864211 11 2467899999999876676554 799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEE
Q 044602 266 STSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLL 305 (674)
Q Consensus 266 ~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 305 (674)
+.++..+.+.|++++++|+|+|++||++.. ...+|...
T Consensus 160 ~~~~~~l~~~l~~~~~~~~tiii~sh~~~~--~~~~d~~~ 197 (200)
T PRK13540 160 ELSLLTIITKIQEHRAKGGAVLLTSHQDLP--LNKADYEE 197 (200)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEeCCchh--ccccchhh
Confidence 999999999999987779999999999754 45577543
No 291
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-39 Score=319.78 Aligned_cols=159 Identities=36% Similarity=0.631 Sum_probs=144.8
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh------hccccEEEEccCCCCCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP------ALKRRIGFVTQDDVLLPQL 182 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~------~~~~~igyv~Q~~~l~~~l 182 (674)
+++|+|+|+++++||+++|+||||||||||+++|+|.+ ++.+|+|.++|+++.. ..++.++|++|++.+++.+
T Consensus 13 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (178)
T cd03229 13 KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLE-EPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHL 91 (178)
T ss_pred eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCC
Confidence 45899999999999999999999999999999999987 4569999999988642 3467899999999999889
Q ss_pred CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 044602 183 TVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTS 262 (674)
Q Consensus 183 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTs 262 (674)
|++||+.+. ||||||||++|||||+.+|++++|||||+
T Consensus 92 t~~~~l~~~------------------------------------------lS~G~~qr~~la~al~~~p~llilDEP~~ 129 (178)
T cd03229 92 TVLENIALG------------------------------------------LSGGQQQRVALARALAMDPDVLLLDEPTS 129 (178)
T ss_pred CHHHheeec------------------------------------------CCHHHHHHHHHHHHHHCCCCEEEEeCCcc
Confidence 999987542 99999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCE
Q 044602 263 GLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGY 311 (674)
Q Consensus 263 gLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 311 (674)
|||+.++..+.+.|++++++ |+|+|+++|++. ++.+.||++++|++|+
T Consensus 130 ~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 130 ALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRDGK 178 (178)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCC
Confidence 99999999999999999887 899999999975 4677899999999885
No 292
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=1.1e-39 Score=318.28 Aligned_cols=155 Identities=34% Similarity=0.613 Sum_probs=141.9
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTV 184 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV 184 (674)
+.+++|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++.. ..++.++|++|++.+++. ||
T Consensus 15 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv 92 (173)
T cd03246 15 PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLL-RPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSG-SI 92 (173)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhcc-CCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccC-cH
Confidence 45899999999999999999999999999999999987 4569999999998742 456789999999988885 99
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 044602 185 EETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGL 264 (674)
Q Consensus 185 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgL 264 (674)
+||+ ||||||||++|||||+.+|++|+|||||+||
T Consensus 93 ~~~l---------------------------------------------LS~G~~qrv~la~al~~~p~~lllDEPt~~L 127 (173)
T cd03246 93 AENI---------------------------------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHL 127 (173)
T ss_pred HHHC---------------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCcccc
Confidence 9987 9999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEE
Q 044602 265 DSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYP 312 (674)
Q Consensus 265 D~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 312 (674)
|+.++..+.+.|++++++|+|+|++||++. .+ +.||++++|++|++
T Consensus 128 D~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 128 DVEGERALNQAIAALKAAGATRIVIAHRPE-TL-ASADRILVLEDGRV 173 (173)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEEECCCC
Confidence 999999999999999877999999999975 34 68999999999974
No 293
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=1.3e-39 Score=319.13 Aligned_cols=161 Identities=34% Similarity=0.587 Sum_probs=144.9
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh---hccccEEEEccCCCCCCCCCHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP---ALKRRIGFVTQDDVLLPQLTVE 185 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~---~~~~~igyv~Q~~~l~~~lTV~ 185 (674)
+++|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. ..++.++|++|++.+++ .|++
T Consensus 15 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~ 92 (178)
T cd03247 15 QQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDL-KPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFD-TTLR 92 (178)
T ss_pred ccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccC-CCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeec-ccHH
Confidence 35899999999999999999999999999999999987 4569999999997642 35678999999998887 5999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 044602 186 ETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD 265 (674)
Q Consensus 186 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD 265 (674)
||+ +..||||||||++|||||+.+|++|+|||||+|||
T Consensus 93 ~~i------------------------------------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD 130 (178)
T cd03247 93 NNL------------------------------------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLD 130 (178)
T ss_pred Hhh------------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCC
Confidence 987 13799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEec
Q 044602 266 STSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYG 316 (674)
Q Consensus 266 ~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 316 (674)
+.++..+.+.|+++. +++|+|++||++.. + ..||++++|++|++++.|
T Consensus 131 ~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~-~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 131 PITERQLLSLIFEVL-KDKTLIWITHHLTG-I-EHMDKILFLENGKIIMQG 178 (178)
T ss_pred HHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HhCCEEEEEECCEEEecC
Confidence 999999999999985 58999999999864 4 569999999999998764
No 294
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1e-39 Score=368.45 Aligned_cols=209 Identities=21% Similarity=0.307 Sum_probs=179.0
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++++|+ .+.+|+|+|+++++||+++|+||||||||||+|+|+|.++
T Consensus 3 ~l~~~~l~~~~~---------------------------~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~- 54 (490)
T PRK10938 3 SLQISQGTFRLS---------------------------DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELP- 54 (490)
T ss_pred eEEEEeEEEEcC---------------------------CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-
Confidence 488999999773 2359999999999999999999999999999999999874
Q ss_pred CCccEEEECCEeCCh----hccccEEEEccCCCC--C------CCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHc
Q 044602 149 DVKGNITYNDIPYNP----ALKRRIGFVTQDDVL--L------PQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKEL 216 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l--~------~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l 216 (674)
+.+|+|.++|.++.. ..++.++|++|++.. + ..+||+|++.+. .+..++++++++.+
T Consensus 55 p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~ 123 (490)
T PRK10938 55 LLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQF 123 (490)
T ss_pred CCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccc-----------hhHHHHHHHHHHHc
Confidence 569999999976532 345679999998642 1 146888887532 12245788999999
Q ss_pred CCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchH
Q 044602 217 GLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSR 296 (674)
Q Consensus 217 gL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~ 296 (674)
||++..++.++ +|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .
T Consensus 124 ~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~-~ 197 (490)
T PRK10938 124 GITALLDRRFK-----YLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFD-E 197 (490)
T ss_pred CCHhhhhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-H
Confidence 99887777654 89999999999999999999999999999999999999999999999888999999999975 4
Q ss_pred HHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 297 MFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 297 i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+.+.||++++|++|+++..|++++..
T Consensus 198 ~~~~~d~v~~l~~G~i~~~~~~~~~~ 223 (490)
T PRK10938 198 IPDFVQFAGVLADCTLAETGEREEIL 223 (490)
T ss_pred HHhhCCEEEEEECCEEEEeCCHHHHh
Confidence 78899999999999999999988753
No 295
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-39 Score=354.55 Aligned_cols=198 Identities=22% Similarity=0.337 Sum_probs=169.7
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETL 188 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l 188 (674)
+.+|+|+||++++||+++|+||||||||||+++|+|+. ++.+|+|.++|.+. ++.+...+.+.+||+||+
T Consensus 37 ~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl-~P~sGeI~I~G~~~---------~i~~~~~l~~~lTV~EnL 106 (549)
T PRK13545 37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVT-MPNKGTVDIKGSAA---------LIAISSGLNGQLTGIENI 106 (549)
T ss_pred ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCC-CCCceEEEECCEee---------eEEeccccCCCCcHHHHH
Confidence 46999999999999999999999999999999999987 45699999999752 122344567778999999
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTS 268 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~ 268 (674)
.+..... ..+.++..++++++++.++|.+..++.+ ++||||||||++|||||+.+|++|||||||+|||+.+
T Consensus 107 ~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~~-----~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~s 178 (549)
T PRK13545 107 ELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQPV-----KTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTF 178 (549)
T ss_pred Hhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCc-----ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHH
Confidence 8854322 2234445567788999999988777765 4899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHHHHH
Q 044602 269 ANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYF 325 (674)
Q Consensus 269 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f 325 (674)
+..+.+.|++++++|+|||++||++. .+.++||++++|++|++++.|+++++.+-|
T Consensus 179 r~~LlelL~el~~~G~TIIIVSHdl~-~i~~l~DrIivL~~GkIv~~G~~~el~~~~ 234 (549)
T PRK13545 179 TKKCLDKMNEFKEQGKTIFFISHSLS-QVKSFCTKALWLHYGQVKEYGDIKEVVDHY 234 (549)
T ss_pred HHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHHhhH
Confidence 99999999999877999999999975 577899999999999999999998876433
No 296
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.3e-39 Score=325.10 Aligned_cols=198 Identities=25% Similarity=0.414 Sum_probs=168.3
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|+++.|+ .+.+|+|+||++++||+++|+||||||||||+++|+|.. +
T Consensus 2 ~l~~~~l~~~~~---------------------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~ 53 (207)
T PRK13539 2 MLEGEDLACVRG---------------------------GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLL-P 53 (207)
T ss_pred EEEEEeEEEEEC---------------------------CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-C
Confidence 478999998763 245899999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEeCCh-hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc
Q 044602 149 DVKGNITYNDIPYNP-ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVG 227 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~-~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 227 (674)
+.+|+|.++|.++.. ..++.++|++|++.+++.+||.||+.+..... ... .++++++++.+||.+..++.+
T Consensus 54 ~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~- 125 (207)
T PRK13539 54 PAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFL---GGE----ELDIAAALEAVGLAPLAHLPF- 125 (207)
T ss_pred CCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhc---CCc----HHHHHHHHHHcCCHHHHcCCh-
Confidence 569999999987642 25678999999988888899999998765332 111 235789999999987666654
Q ss_pred CCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEE
Q 044602 228 GGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLI 307 (674)
Q Consensus 228 ~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L 307 (674)
+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||++.. +.. |+++.+
T Consensus 126 ----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~-~~~--~~~~~~ 198 (207)
T PRK13539 126 ----GYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLG-LPG--ARELDL 198 (207)
T ss_pred ----hhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchh-hcc--CcEEee
Confidence 4899999999999999999999999999999999999999999999988789999999999754 443 888877
Q ss_pred eC
Q 044602 308 SE 309 (674)
Q Consensus 308 ~~ 309 (674)
+.
T Consensus 199 ~~ 200 (207)
T PRK13539 199 GP 200 (207)
T ss_pred cC
Confidence 54
No 297
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=2.5e-39 Score=318.35 Aligned_cols=160 Identities=26% Similarity=0.519 Sum_probs=145.1
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-----hccccEEEEccCC---CCCCCC
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-----ALKRRIGFVTQDD---VLLPQL 182 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~---~l~~~l 182 (674)
+|+|+|+++++||+++|+||||||||||+++|+|.+ ++.+|+|.++|+++.. ..++.++|++|++ .+++.+
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 93 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLR-PPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDL 93 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCC
Confidence 799999999999999999999999999999999987 4569999999988742 2467899999984 578889
Q ss_pred CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 044602 183 TVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTS 262 (674)
Q Consensus 183 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTs 262 (674)
|++||+.+... ||||||||++|||||+.+|++|+|||||+
T Consensus 94 t~~e~l~~~~~----------------------------------------LS~G~~qrl~la~al~~~p~llllDEP~~ 133 (182)
T cd03215 94 SVAENIALSSL----------------------------------------LSGGNQQKVVLARWLARDPRVLILDEPTR 133 (182)
T ss_pred cHHHHHHHHhh----------------------------------------cCHHHHHHHHHHHHHccCCCEEEECCCCc
Confidence 99999987420 99999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEE
Q 044602 263 GLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYP 312 (674)
Q Consensus 263 gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 312 (674)
|||+.++..+.+.|++++++|+|+|+++|++. ++.++||++++|++|++
T Consensus 134 ~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 134 GVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDRILVMYEGRI 182 (182)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEecCCcC
Confidence 99999999999999999877899999999975 57889999999999974
No 298
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=2.5e-39 Score=328.57 Aligned_cols=197 Identities=28% Similarity=0.443 Sum_probs=165.5
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCC--CCCCHHHHHHHHHhh
Q 044602 117 GSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLL--PQLTVEETLVFAAFL 194 (674)
Q Consensus 117 ~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~--~~lTV~e~l~~~~~~ 194 (674)
|++++||+++|+||||||||||+++|+|..+ +.+|+|.+||+++.. .++.++|++|++.++ ..+|+.||+.++...
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~-~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~ 78 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP-PAKGTVKVAGASPGK-GWRHIGYVPQRHEFAWDFPISVAHTVMSGRTG 78 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCccchH-hhCcEEEecccccccCCCCccHHHHHHhcccc
Confidence 4689999999999999999999999999874 569999999988643 456899999998663 347999999876321
Q ss_pred cCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 044602 195 RLP-GNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLI 273 (674)
Q Consensus 195 ~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~ 273 (674)
... ......+..++++++++.+|+.+..++.+ .+||||||||++|||+|+.+|++++|||||+|||+.++..+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~ 153 (223)
T TIGR03771 79 HIGWLRRPCVADFAAVRDALRRVGLTELADRPV-----GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLT 153 (223)
T ss_pred ccccccCCcHHHHHHHHHHHHHhCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 100 00112233456889999999987777665 489999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 274 QVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 274 ~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+.|++++++|+|+|++||++. ++.+.||+++++ +|++++.|+++++.
T Consensus 154 ~~l~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l-~G~i~~~~~~~~~~ 200 (223)
T TIGR03771 154 ELFIELAGAGTAILMTTHDLA-QAMATCDRVVLL-NGRVIADGTPQQLQ 200 (223)
T ss_pred HHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHHhc
Confidence 999999877999999999976 478899999999 89999999988763
No 299
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=4.3e-39 Score=322.93 Aligned_cols=198 Identities=21% Similarity=0.360 Sum_probs=164.1
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++++|+. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+. +
T Consensus 6 ~l~~~~l~~~~~~-------------------------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~-~ 59 (207)
T cd03369 6 EIEVENLSVRYAP-------------------------DLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFL-E 59 (207)
T ss_pred eEEEEEEEEEeCC-------------------------CCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhccc-C
Confidence 4889999997742 1135899999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccc
Q 044602 149 DVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHT 224 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 224 (674)
+.+|+|.++|+++.. ..++.++|++|++.+++. ||+||+.+.. .... +.+.+.++ + +.
T Consensus 60 ~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~~l~~~~------~~~~----~~~~~~l~---~----~~ 121 (207)
T cd03369 60 AEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSG-TIRSNLDPFD------EYSD----EEIYGALR---V----SE 121 (207)
T ss_pred CCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCc-cHHHHhcccC------CCCH----HHHHHHhh---c----cC
Confidence 569999999998642 356789999999988875 9999997531 1121 12333333 1 22
Q ss_pred cccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEE
Q 044602 225 RVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKL 304 (674)
Q Consensus 225 ~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v 304 (674)
.++.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++. +|+|+|++||++.. +. .+|++
T Consensus 122 -----~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~~-~~-~~d~v 193 (207)
T cd03369 122 -----GGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLRT-II-DYDKI 193 (207)
T ss_pred -----CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-Hh-hCCEE
Confidence 345899999999999999999999999999999999999999999999985 48999999999864 44 49999
Q ss_pred EEEeCCEEEEecCh
Q 044602 305 LLISEGYPVYYGKA 318 (674)
Q Consensus 305 ~~L~~G~iv~~G~~ 318 (674)
++|++|+++..|++
T Consensus 194 ~~l~~g~i~~~g~~ 207 (207)
T cd03369 194 LVMDAGEVKEYDHP 207 (207)
T ss_pred EEEECCEEEecCCC
Confidence 99999999988864
No 300
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-39 Score=366.83 Aligned_cols=205 Identities=21% Similarity=0.379 Sum_probs=175.3
Q ss_pred cceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-----hccccEEEEccCC---CCCCC
Q 044602 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-----ALKRRIGFVTQDD---VLLPQ 181 (674)
Q Consensus 110 ~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~---~l~~~ 181 (674)
.+++|+|+++++||+++|+||||||||||+|+|+|.. ++.+|+|.++|+++.. ..++.++|++|++ .+++.
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~-~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 345 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGAT-RRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPV 345 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCC-cCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCC
Confidence 5899999999999999999999999999999999987 4569999999988642 2456899999996 48888
Q ss_pred CCHHHHHHHHHhhcC-CCC--CCHHHHHHHHHHHHHHcCCC-ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEE
Q 044602 182 LTVEETLVFAAFLRL-PGN--MNRQQKYARVQMILKELGLE-RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLL 257 (674)
Q Consensus 182 lTV~e~l~~~~~~~~-~~~--~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illL 257 (674)
+||.||+.++..... ... ....+.++.++++++.+|+. +..+++++ .|||||||||+|||+|+.+|++|||
T Consensus 346 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~qrl~la~al~~~p~lllL 420 (501)
T PRK11288 346 HSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIM-----NLSGGNQQKAILGRWLSEDMKVILL 420 (501)
T ss_pred CCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccc-----cCCHHHHHHHHHHHHHccCCCEEEE
Confidence 999999987542110 001 12233345788999999994 66777665 8999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHH
Q 044602 258 DEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 258 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
||||+|||+.++..+++.|++++++|.|||++|||+. ++.++||++++|++|++++.|+++++
T Consensus 421 DEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 421 DEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP-EVLGVADRIVVMREGRIAGELAREQA 483 (501)
T ss_pred cCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHhhCCEEEEEECCEEEEEEccccC
Confidence 9999999999999999999999888999999999975 57899999999999999999988764
No 301
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=3.1e-39 Score=365.38 Aligned_cols=205 Identities=22% Similarity=0.415 Sum_probs=175.4
Q ss_pred cceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-----hccccEEEEccCC---CCCCC
Q 044602 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-----ALKRRIGFVTQDD---VLLPQ 181 (674)
Q Consensus 110 ~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~---~l~~~ 181 (674)
.+|+|+||++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|+++.. ..++.+|||+|++ .+++.
T Consensus 266 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~-p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 344 (501)
T PRK10762 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP-RTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLG 344 (501)
T ss_pred CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC-CCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCC
Confidence 47999999999999999999999999999999999874 469999999988742 2456799999996 57888
Q ss_pred CCHHHHHHHHHhhcCC---CCCCHHHHHHHHHHHHHHcCCC-ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEE
Q 044602 182 LTVEETLVFAAFLRLP---GNMNRQQKYARVQMILKELGLE-RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLL 257 (674)
Q Consensus 182 lTV~e~l~~~~~~~~~---~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illL 257 (674)
+||.||+.+....... .....++..++++++++.+||. +..+++++ +|||||||||+|||||+.+|++|||
T Consensus 345 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGekqrv~lA~al~~~p~lllL 419 (501)
T PRK10762 345 MSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIG-----LLSGGNQQKVAIARGLMTRPKVLIL 419 (501)
T ss_pred CcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchh-----hCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 9999999875321100 0122334456788999999995 56777654 8999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHH
Q 044602 258 DEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 258 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
||||+|||+.++..+.+.|++++++|+|||++|||+. ++.++||++++|++|+++..|+++++
T Consensus 420 DEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 420 DEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP-EVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred cCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEECCEEEEEeccccC
Confidence 9999999999999999999999888999999999975 57889999999999999999988765
No 302
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=7.2e-39 Score=333.64 Aligned_cols=234 Identities=26% Similarity=0.437 Sum_probs=201.7
Q ss_pred CCceeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHc
Q 044602 65 PLPIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 65 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G 144 (674)
..++.++.+||...|+.+..- . +-..+...++++||+++++||.++|+|.||||||||-.+|.+
T Consensus 272 ~~~~ll~~~~v~v~f~i~~g~-------------~---~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allr 335 (534)
T COG4172 272 DAPVLLEVEDLRVWFPIKGGF-------------L---RRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLR 335 (534)
T ss_pred CCCceEEecceEEEEecCCcc-------------c---cccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHh
Confidence 355779999999888765221 0 001233568999999999999999999999999999999997
Q ss_pred CCCCCCccEEEECCEeCCh-------hccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHH
Q 044602 145 RLTDDVKGNITYNDIPYNP-------ALKRRIGFVTQDD--VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKE 215 (674)
Q Consensus 145 ~~~~~~~G~I~~~g~~~~~-------~~~~~igyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~ 215 (674)
++ ++ +|+|.++|+++.. .+|+++-.||||| .|-|.+||.|-+.-+.....+ ..+++++.+++.+.|++
T Consensus 336 L~-~s-~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~E 412 (534)
T COG4172 336 LI-PS-QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEE 412 (534)
T ss_pred hc-Cc-CceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHH
Confidence 76 43 6999999999862 3688999999998 489999999999998776543 46889999999999999
Q ss_pred cCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCc
Q 044602 216 LGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPS 294 (674)
Q Consensus 216 lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~ 294 (674)
+||+... -+++++++|||||||++||||++.+|++++||||||+||..-+.+|+++|++|.++ |.+-++++||..
T Consensus 413 VGLDp~~----r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~ 488 (534)
T COG4172 413 VGLDPAT----RNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA 488 (534)
T ss_pred cCCChhH----hhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHH
Confidence 9997532 23578999999999999999999999999999999999999999999999999864 999999999975
Q ss_pred hHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 295 SRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 295 ~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.+..+||+|+||++|+||+.|+.+++.
T Consensus 489 -VvrAl~~~viVm~~GkiVE~G~~~~if 515 (534)
T COG4172 489 -VVRALCHRVIVMRDGKIVEQGPTEAVF 515 (534)
T ss_pred -HHHHhhceEEEEeCCEEeeeCCHHHHh
Confidence 588899999999999999999999874
No 303
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=3.1e-39 Score=402.89 Aligned_cols=214 Identities=21% Similarity=0.312 Sum_probs=185.9
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++|+||+|+|+. +.+.+|+|+||+|+|||.+||+|+||||||||+++|.|+.
T Consensus 1216 g~I~f~nVs~~Y~~-------------------------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~- 1269 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTE-------------------------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLL- 1269 (1490)
T ss_pred CeEEEEEEEEEeCC-------------------------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc-
Confidence 46999999999862 2356999999999999999999999999999999999976
Q ss_pred CCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC-----
Q 044602 148 DDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL----- 218 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL----- 218 (674)
+ .+|+|++||.+++. .+|++++|||||+.+|++ ||+|||.... ..+ ++++.++++..+|
T Consensus 1270 ~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~~t----deei~~aL~~~~L~~~i~ 1337 (1490)
T TIGR01271 1270 S-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE------QWS----DEEIWKVAEEVGLKSVIE 1337 (1490)
T ss_pred C-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCcc-CHHHHhCccc------CCC----HHHHHHHHHHCCCHHHHH
Confidence 4 58999999999863 588999999999999998 9999996421 122 3456667776665
Q ss_pred --CccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchH
Q 044602 219 --ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSR 296 (674)
Q Consensus 219 --~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~ 296 (674)
++..|+.||+.+ ..||||||||++|||||+++|+||+||||||+||..+...|.+.|++.. +++|||+++|+++.
T Consensus 1338 ~lp~GLdt~v~e~G-~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~t- 1414 (1490)
T TIGR01271 1338 QFPDKLDFVLVDGG-YVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVEA- 1414 (1490)
T ss_pred hCccccccccccCC-CcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-
Confidence 457899998754 4699999999999999999999999999999999999999999999875 48999999999864
Q ss_pred HHhhcCEEEEEeCCEEEEecChhHHHH
Q 044602 297 MFHMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 297 i~~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
...||||++|++|++++.|+|+++++
T Consensus 1415 -i~~~DrIlvL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1415 -LLECQQFLVIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred -HHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 56699999999999999999999863
No 304
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.5e-40 Score=315.94 Aligned_cols=208 Identities=25% Similarity=0.432 Sum_probs=185.1
Q ss_pred ccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----hccccEEEEccCCCCCCCC
Q 044602 107 DYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQL 182 (674)
Q Consensus 107 ~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~l 182 (674)
+.+.||+|+|+++++|.+++|+|||||||||||.+++.++ +..+|+|.++|.++.. ++.++++..-|+..+-..+
T Consensus 12 ~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~-~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rl 90 (252)
T COG4604 12 GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLL-KKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRL 90 (252)
T ss_pred CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhc-cccCceEEEeeeecccCChHHHHHHHHHHHhhchhhhee
Confidence 4578999999999999999999999999999999999655 5669999999999853 5778899999999888899
Q ss_pred CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 044602 183 TVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTS 262 (674)
Q Consensus 183 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTs 262 (674)
||+|-+.|+..-... +...++....+++.++.++|++..|+.+ .+||||||||.-||..++.+.+.++||||.+
T Consensus 91 TV~dLv~FGRfPYSq-GRlt~eD~~~I~~aieyl~L~~l~dryL-----d~LSGGQrQRAfIAMVlaQdTdyvlLDEPLN 164 (252)
T COG4604 91 TVRDLVGFGRFPYSQ-GRLTKEDRRIINEAIEYLHLEDLSDRYL-----DELSGGQRQRAFIAMVLAQDTDYVLLDEPLN 164 (252)
T ss_pred EHHHHhhcCCCcccC-CCCchHHHHHHHHHHHHhcccchHHHhH-----HhcccchhhhhhhheeeeccCcEEEecCccc
Confidence 999999998433222 2234566778999999999999888765 5899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 263 GLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 263 gLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+||-..+..+++.|++++++ |+||+++.||... ...++|+|+-|++|+++..|+++|++
T Consensus 165 NLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK~G~vv~~G~~~eii 224 (252)
T COG4604 165 NLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALKNGKVVKQGSPDEII 224 (252)
T ss_pred ccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeecCCEEEecCCHHHhc
Confidence 99999999999999999986 9999999999875 56789999999999999999999985
No 305
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-38 Score=310.17 Aligned_cols=231 Identities=29% Similarity=0.398 Sum_probs=200.9
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC-
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT- 147 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~- 147 (674)
.++++||.+++.. .++||++||++|++||+.+||||||||||||.++|+|.-.
T Consensus 3 ~L~I~dLhv~v~~--------------------------~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y 56 (251)
T COG0396 3 MLEIKDLHVEVEG--------------------------KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKY 56 (251)
T ss_pred eeEEeeeEEEecC--------------------------chhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCc
Confidence 5889999987641 1579999999999999999999999999999999999753
Q ss_pred CCCccEEEECCEeCCh-----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-c
Q 044602 148 DDVKGNITYNDIPYNP-----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER-C 221 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~ 221 (674)
..++|+|.++|+++.+ +.|..+..-+|.|.=+|+.|+.+-|..+...+....-...+..+++++.++.+++++ .
T Consensus 57 ~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~ 136 (251)
T COG0396 57 EVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEF 136 (251)
T ss_pred eEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHH
Confidence 4579999999999853 567789999999999999999999998776543221113456678899999999987 6
Q ss_pred ccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhc
Q 044602 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMF 301 (674)
Q Consensus 222 ~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~ 301 (674)
+++.|. .++|||||||..|+..++.+|++.+||||-||||..+-+.|-+.++++++.|.+++++||.. ++..+.
T Consensus 137 l~R~vN----~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~--rll~~i 210 (251)
T COG0396 137 LERYVN----EGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ--RLLDYI 210 (251)
T ss_pred hhcccC----CCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHhhc
Confidence 677765 38999999999999999999999999999999999999999999999999999999999985 456665
Q ss_pred --CEEEEEeCCEEEEecChhHHHHHHHhCCCCC
Q 044602 302 --DKLLLISEGYPVYYGKARESMEYFSSLGFIP 332 (674)
Q Consensus 302 --D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~ 332 (674)
|+|.+|.+|+|+..|.+ ++.++++..||.|
T Consensus 211 ~pD~vhvl~~GrIv~sG~~-el~~~le~~gy~~ 242 (251)
T COG0396 211 KPDKVHVLYDGRIVKSGDP-ELAEELEEKGYDW 242 (251)
T ss_pred CCCEEEEEECCEEEecCCH-HHHHHHHHhchHH
Confidence 99999999999999999 9999999999865
No 306
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.1e-40 Score=327.52 Aligned_cols=193 Identities=29% Similarity=0.475 Sum_probs=173.4
Q ss_pred eeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--------hccccEEEEccCCCCCCCCCHH
Q 044602 114 GITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--------ALKRRIGFVTQDDVLLPQLTVE 185 (674)
Q Consensus 114 ~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--------~~~~~igyv~Q~~~l~~~lTV~ 185 (674)
+++++.+.-.++||-|+||||||||+|+|+|+..| .+|.|.+||..+.+ .-+|+|||||||..|||++||+
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rP-deG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVr 94 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRP-DEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVR 94 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCc-cccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEe
Confidence 78888888679999999999999999999998854 59999999986532 2467899999999999999999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 044602 186 ETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD 265 (674)
Q Consensus 186 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD 265 (674)
.||.|+.... .....+++.+.+|++|..++. +..|||||||||+|+|||+++|++|+||||.++||
T Consensus 95 gNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R~-----P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD 160 (352)
T COG4148 95 GNLRYGMWKS---------MRAQFDQLVALLGIEHLLDRY-----PGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160 (352)
T ss_pred cchhhhhccc---------chHhHHHHHHHhCcHHHHhhC-----CCccCcchhhHHHHHHHHhcCCCeeeecCchhhcc
Confidence 9999985321 335678899999999999875 45899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 266 STSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 266 ~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
-..+.+++-.|++|+++ +..|+.+||.+. |+.+++|+|++|++|++...|+.+++.
T Consensus 161 ~~RK~EilpylERL~~e~~IPIlYVSHS~~-Ev~RLAd~vV~le~GkV~A~g~~e~v~ 217 (352)
T COG4148 161 LPRKREILPYLERLRDEINIPILYVSHSLD-EVLRLADRVVVLENGKVKASGPLEEVW 217 (352)
T ss_pred cchhhHHHHHHHHHHHhcCCCEEEEecCHH-HHHhhhheEEEecCCeEEecCcHHHHh
Confidence 99999999999999986 889999999964 799999999999999999999999874
No 307
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=7.8e-39 Score=342.43 Aligned_cols=186 Identities=30% Similarity=0.488 Sum_probs=164.4
Q ss_pred EEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHH
Q 044602 127 LMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQ 204 (674)
Q Consensus 127 ilG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~ 204 (674)
|+||||||||||||+|+|+. ++.+|+|.++|+++.. ..++.+||++|++.+++++||+||+.|+...+ ...+++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~-~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~ 76 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFE-QPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPRAE 76 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCC-CCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCHHH
Confidence 68999999999999999987 4569999999998753 34678999999999999999999999986432 234445
Q ss_pred HHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C
Q 044602 205 KYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-G 283 (674)
Q Consensus 205 ~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g 283 (674)
..++++++++.+||.+..++.+ ++|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |
T Consensus 77 ~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g 151 (325)
T TIGR01187 77 IKPRVLEALRLVQLEEFADRKP-----HQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLG 151 (325)
T ss_pred HHHHHHHHHHHcCCcchhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcC
Confidence 5667899999999988777654 589999999999999999999999999999999999999999999999765 8
Q ss_pred cEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 284 RTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 284 ~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+|+|++||++. ++.++||++++|++|+++..|+++++.
T Consensus 152 ~tiiivTHd~~-e~~~~~d~i~vl~~G~i~~~g~~~~~~ 189 (325)
T TIGR01187 152 ITFVFVTHDQE-EAMTMSDRIAIMRKGKIAQIGTPEEIY 189 (325)
T ss_pred CEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999975 578899999999999999999999874
No 308
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4.1e-40 Score=306.86 Aligned_cols=200 Identities=27% Similarity=0.439 Sum_probs=173.4
Q ss_pred cccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----hccccEEEEccC
Q 044602 100 SQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----ALKRRIGFVTQD 175 (674)
Q Consensus 100 ~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~ 175 (674)
+++.|..++.++|+|+||.+++||..+|.||||||||||+|+++.+. ++++|.+++.|++++. .+|.+|+|+.|.
T Consensus 7 kq~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Li-sp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~ 85 (223)
T COG4619 7 KQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLI-SPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQT 85 (223)
T ss_pred HHHHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhcc-CCCCceEEEcCccccccChHHHHHHHHHHHcC
Confidence 33444456678999999999999999999999999999999999766 5679999999999863 689999999999
Q ss_pred CCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccc-cccccCCccCccCHHHHHHHHHHHHHhhCCCE
Q 044602 176 DVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCR-HTRVGGGFIKGISGGERKRTSIGYEILVDPSL 254 (674)
Q Consensus 176 ~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~i 254 (674)
+.||++ ||++|+.|.-..+-.. -..+...++|+.++|++.. ++. +.+||||||||++|+|.|..-|+|
T Consensus 86 paLfg~-tVeDNlifP~~~r~rr-----~dr~aa~~llar~~l~~~~L~k~-----it~lSGGE~QriAliR~Lq~~P~I 154 (223)
T COG4619 86 PALFGD-TVEDNLIFPWQIRNRR-----PDRAAALDLLARFALPDSILTKN-----ITELSGGEKQRIALIRNLQFMPKI 154 (223)
T ss_pred cccccc-chhhccccchHHhccC-----CChHHHHHHHHHcCCchhhhcch-----hhhccchHHHHHHHHHHhhcCCce
Confidence 999998 9999999987765322 1335677899999998653 333 358999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEecCCchHHHhhcCEEEEEeCCEE
Q 044602 255 LLLDEPTSGLDSTSANKLIQVLQKVA-KAGRTVITTIHQPSSRMFHMFDKLLLISEGYP 312 (674)
Q Consensus 255 llLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 312 (674)
|+||||||+||+.+++.|.++|.++. ++++.++.+|||+. +..+.+||++-+..|++
T Consensus 155 LLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~d-qa~rha~k~itl~~G~~ 212 (223)
T COG4619 155 LLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKD-QAIRHADKVITLQPGHA 212 (223)
T ss_pred EEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChH-HHhhhhheEEEeccCcc
Confidence 99999999999999999999998887 56899999999976 46789999999999975
No 309
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=4e-39 Score=316.31 Aligned_cols=164 Identities=35% Similarity=0.610 Sum_probs=143.9
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTV 184 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV 184 (674)
+.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. .+++.++|++|
T Consensus 12 ~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~-~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q---------- 80 (180)
T cd03214 12 RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLL-KPSSGEILLDGKDLASLSPKELARKIAYVPQ---------- 80 (180)
T ss_pred eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEECCcCCHHHHHHHHhHHHH----------
Confidence 45999999999999999999999999999999999987 4569999999998742 34456888887
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 044602 185 EETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGL 264 (674)
Q Consensus 185 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgL 264 (674)
+++.+||.+..++.+ +.||||||||++|||+|+.+|++++|||||+||
T Consensus 81 ---------------------------~l~~~gl~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEP~~~L 128 (180)
T cd03214 81 ---------------------------ALELLGLAHLADRPF-----NELSGGERQRVLLARALAQEPPILLLDEPTSHL 128 (180)
T ss_pred ---------------------------HHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCC
Confidence 556677766555543 589999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEec
Q 044602 265 DSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYG 316 (674)
Q Consensus 265 D~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 316 (674)
|+.++..+.+.|++++++ |+|+|+++|++. .+.++||++++|++|++++.|
T Consensus 129 D~~~~~~~~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 129 DIAHQIELLELLRRLARERGKTVVMVLHDLN-LAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 999999999999999876 899999999976 467899999999999998754
No 310
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=9.5e-39 Score=342.49 Aligned_cols=215 Identities=28% Similarity=0.416 Sum_probs=193.2
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++++++.|+ ...+++|||+++++||+.||+|.||||||||+|+|.|.+.
T Consensus 4 ~l~~~~itK~f~---------------------------~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~- 55 (501)
T COG3845 4 ALEMRGITKRFP---------------------------GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQ- 55 (501)
T ss_pred eEEEeccEEEcC---------------------------CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCccc-
Confidence 478889988764 2568999999999999999999999999999999999874
Q ss_pred CCccEEEECCEeCC-----hhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 044602 149 DVKGNITYNDIPYN-----PALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRH 223 (674)
Q Consensus 149 ~~~G~I~~~g~~~~-----~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 223 (674)
|++|+|.+||+++. +..+..||+|+|+..|+|++||.||+.++.........+.++.+++++++.++.||+-..|
T Consensus 56 P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~ 135 (501)
T COG3845 56 PDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPD 135 (501)
T ss_pred CCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCcc
Confidence 56999999999874 2467789999999999999999999999865432234577788899999999999998888
Q ss_pred ccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCE
Q 044602 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDK 303 (674)
Q Consensus 224 ~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 303 (674)
.+|+ .||-||||||.|-++|.++|++|||||||+-|-|...+++++.|++++++|+|||++||... |+.++|||
T Consensus 136 ~~V~-----dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~-Ev~~iaDr 209 (501)
T COG3845 136 AKVA-----DLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK-EVMAIADR 209 (501)
T ss_pred ceee-----cCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhhCe
Confidence 8876 79999999999999999999999999999999999999999999999999999999999975 68999999
Q ss_pred EEEEeCCEEEEecC
Q 044602 304 LLLISEGYPVYYGK 317 (674)
Q Consensus 304 v~~L~~G~iv~~G~ 317 (674)
+.||.+|+++..-+
T Consensus 210 vTVLR~Gkvvgt~~ 223 (501)
T COG3845 210 VTVLRRGKVVGTVD 223 (501)
T ss_pred eEEEeCCeEEeeec
Confidence 99999999876655
No 311
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=6.3e-39 Score=397.66 Aligned_cols=213 Identities=24% Similarity=0.417 Sum_probs=174.1
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+|+|+.. ..+++|+|+||++++||++||+||||||||||+++|+|++ +
T Consensus 382 ~I~~~nVsf~Y~~~------------------------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~-~ 436 (1466)
T PTZ00265 382 KIQFKNVRFHYDTR------------------------KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLY-D 436 (1466)
T ss_pred cEEEEEEEEEcCCC------------------------CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhc-c
Confidence 69999999988521 1246999999999999999999999999999999999977 5
Q ss_pred CCccEEEE-CCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcC----------CC-----C---------
Q 044602 149 DVKGNITY-NDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRL----------PG-----N--------- 199 (674)
Q Consensus 149 ~~~G~I~~-~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~----------~~-----~--------- 199 (674)
+.+|+|++ +|+++.+ .+|++||||+|++.+|+. ||+|||.++..... +. .
T Consensus 437 p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~-TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (1466)
T PTZ00265 437 PTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSN-SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCR 515 (1466)
T ss_pred CCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhc-cHHHHHHhcCCCccccchhcccccccccccccccccccccc
Confidence 56999999 4677642 468899999999999986 99999999742100 00 0
Q ss_pred ---------------C---------CHHHHHHHHHHHHHHcC-------CCccccccccCCccCccCHHHHHHHHHHHHH
Q 044602 200 ---------------M---------NRQQKYARVQMILKELG-------LERCRHTRVGGGFIKGISGGERKRTSIGYEI 248 (674)
Q Consensus 200 ---------------~---------~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~iA~aL 248 (674)
. .....++++.++++.++ |++..||.+|+. ...||||||||++|||||
T Consensus 516 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~-g~~LSGGQkQRiaIARAl 594 (1466)
T PTZ00265 516 AKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSN-ASKLSGGQKQRISIARAI 594 (1466)
T ss_pred ccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCC-CCcCCHHHHHHHHHHHHH
Confidence 0 00012244566666654 466778888865 457999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecCCchHHHhhcCEEEEEeCC
Q 044602 249 LVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK-AGRTVITTIHQPSSRMFHMFDKLLLISEG 310 (674)
Q Consensus 249 ~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 310 (674)
+++|+|||||||||+||+.++..+.+.|+++++ +|+|+|+++|+++. .+.||+|++|++|
T Consensus 595 l~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~--i~~aD~Iivl~~g 655 (1466)
T PTZ00265 595 IRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLST--IRYANTIFVLSNR 655 (1466)
T ss_pred hcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHH--HHhCCEEEEEeCC
Confidence 999999999999999999999999999999975 58999999999864 4789999999986
No 312
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=9.4e-39 Score=365.16 Aligned_cols=203 Identities=24% Similarity=0.303 Sum_probs=171.8
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++||+|+|+. .+++|+|+|+++++||.+||+||||||||||+++|+|.+
T Consensus 321 ~~i~~~~v~f~y~~--------------------------~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~- 373 (547)
T PRK10522 321 QTLELRNVTFAYQD--------------------------NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLY- 373 (547)
T ss_pred ceEEEEEEEEEeCC--------------------------CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-
Confidence 36999999998851 135899999999999999999999999999999999977
Q ss_pred CCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 044602 148 DDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRH 223 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 223 (674)
++.+|+|.+||+++++ .++++++||+|++.+|++ |++|| + . ...++.+++.++.+++.+..+
T Consensus 374 ~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~n---~------~----~~~~~~~~~~~~~~~l~~~~~ 439 (547)
T PRK10522 374 QPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQ-LLGPE---G------K----PANPALVEKWLERLKMAHKLE 439 (547)
T ss_pred CCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHH-hhccc---c------C----chHHHHHHHHHHHcCCchhhh
Confidence 5569999999999863 578899999999999987 88887 1 0 122346778899998875433
Q ss_pred ccccCC--ccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecCCchHHHhh
Q 044602 224 TRVGGG--FIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK-AGRTVITTIHQPSSRMFHM 300 (674)
Q Consensus 224 ~~vg~~--~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~ 300 (674)
. ++. ....||||||||++||||++++|++|+||||||+||+.++..+.+.|.+..+ .|+|+|+++|+++ ..+.
T Consensus 440 ~--~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~--~~~~ 515 (547)
T PRK10522 440 L--EDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDH--YFIH 515 (547)
T ss_pred c--cccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechH--HHHh
Confidence 2 221 1247999999999999999999999999999999999999999999976644 5899999999985 4678
Q ss_pred cCEEEEEeCCEEEEe
Q 044602 301 FDKLLLISEGYPVYY 315 (674)
Q Consensus 301 ~D~v~~L~~G~iv~~ 315 (674)
||+|++|++|++++.
T Consensus 516 ~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 516 ADRLLEMRNGQLSEL 530 (547)
T ss_pred CCEEEEEECCEEEEe
Confidence 999999999999876
No 313
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=7.6e-38 Score=327.85 Aligned_cols=189 Identities=32% Similarity=0.486 Sum_probs=153.5
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETL 188 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l 188 (674)
+.+|+|+|+++++||+++|+||||||||||+++|+|++ ++.+|+|.++| .++|++|++.+++. ||+||+
T Consensus 50 ~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~-~p~~G~I~i~g---------~i~yv~q~~~l~~~-tv~enl 118 (282)
T cd03291 50 APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGEL-EPSEGKIKHSG---------RISFSSQFSWIMPG-TIKENI 118 (282)
T ss_pred ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECC---------EEEEEeCccccccc-CHHHHh
Confidence 45899999999999999999999999999999999987 45699999988 39999999988886 999999
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLER-------CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPT 261 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPT 261 (674)
.++... .. .++.+.++.+++.+ ..++.++ ..+..||||||||++|||+|+.+|++|||||||
T Consensus 119 ~~~~~~------~~----~~~~~~l~~~~l~~~l~~~~~~~~~~~~-~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt 187 (282)
T cd03291 119 IFGVSY------DE----YRYKSVVKACQLEEDITKFPEKDNTVLG-EGGITLSGGQRARISLARAVYKDADLYLLDSPF 187 (282)
T ss_pred hccccc------CH----HHHHHHHHHhCCHHHHHhccccccceec-CCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 875311 11 11223333333322 2233332 234689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHH-HHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 262 SGLDSTSANKLIQVL-QKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 262 sgLD~~~~~~i~~~L-~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+|||+.++..+.+.+ ++++ ++.|||++||++.. + ..||++++|++|++++.|+++++.
T Consensus 188 ~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~~~ 246 (282)
T cd03291 188 GYLDVFTEKEIFESCVCKLM-ANKTRILVTSKMEH-L-KKADKILILHEGSSYFYGTFSELQ 246 (282)
T ss_pred ccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChHH-H-HhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999865 5554 48999999999864 4 679999999999999999998764
No 314
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.6e-38 Score=360.10 Aligned_cols=204 Identities=22% Similarity=0.296 Sum_probs=172.2
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-----hccccEEEEccCC---CCCCCC
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-----ALKRRIGFVTQDD---VLLPQL 182 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~---~l~~~l 182 (674)
+|+|+|+++++||+++|+||||||||||+|+|+|.. ++.+|+|.++|+++.. ..++.++|++|++ .+++.+
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~-~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~ 356 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLR-PARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDA 356 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC-CCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCC
Confidence 699999999999999999999999999999999987 4569999999998742 2356799999984 488889
Q ss_pred CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 044602 183 TVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE-RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPT 261 (674)
Q Consensus 183 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPT 261 (674)
||.||+.................+++++++++.+||+ +..+++++ +|||||||||+|||||+.+|++|||||||
T Consensus 357 t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~kqrl~la~al~~~p~lLlLDEPt 431 (510)
T PRK15439 357 PLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAAR-----TLSGGNQQKVLIAKCLEASPQLLIVDEPT 431 (510)
T ss_pred cHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccc-----cCCcHHHHHHHHHHHHhhCCCEEEECCCC
Confidence 9999986431111110111223345688999999997 66777654 89999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHH
Q 044602 262 SGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 262 sgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
+|||+.++..+.+.|++++++|.|||++|||+. ++.++||++++|++|+++..|+++++
T Consensus 432 ~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~-~i~~~~d~i~~l~~G~i~~~~~~~~~ 490 (510)
T PRK15439 432 RGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE-EIEQMADRVLVMHQGEISGALTGAAI 490 (510)
T ss_pred cCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEEccccC
Confidence 999999999999999999888999999999975 57889999999999999999977654
No 315
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.7e-38 Score=317.83 Aligned_cols=179 Identities=27% Similarity=0.485 Sum_probs=144.2
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETL 188 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l 188 (674)
+.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++| +++|++|++.+++ .|++||+
T Consensus 18 ~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~-~~~~G~i~~~g---------~i~~~~q~~~l~~-~t~~enl 86 (204)
T cd03250 18 SFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGEL-EKLSGSVSVPG---------SIAYVSQEPWIQN-GTIRENI 86 (204)
T ss_pred cceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcC-CCCCCeEEEcC---------EEEEEecCchhcc-CcHHHHh
Confidence 35999999999999999999999999999999999987 45699999998 5999999999886 5999999
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLER-------CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPT 261 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPT 261 (674)
.+.... ..+ ...+.++.+++.+ ..++.+. ..+.+||||||||++|||+|+.+|++++|||||
T Consensus 87 ~~~~~~------~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~lS~G~~qrv~laral~~~p~llllDEP~ 155 (204)
T cd03250 87 LFGKPF------DEE----RYEKVIKACALEPDLEILPDGDLTEIG-EKGINLSGGQKQRISLARAVYSDADIYLLDDPL 155 (204)
T ss_pred ccCCCc------CHH----HHHHHHHHcCcHHHHHhccCcccceec-CCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 875321 111 1222233333221 1222222 235689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHH-HHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCE
Q 044602 262 SGLDSTSANKLIQ-VLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGY 311 (674)
Q Consensus 262 sgLD~~~~~~i~~-~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 311 (674)
+|||+.+++.+.+ .++++.++|+|||++||++.. +.. +|++++|++|+
T Consensus 156 ~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~-~~~-~d~i~~l~~G~ 204 (204)
T cd03250 156 SAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQL-LPH-ADQIVVLDNGR 204 (204)
T ss_pred ccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHH-Hhh-CCEEEEEeCCC
Confidence 9999999999998 567776668999999999754 455 99999999985
No 316
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=5.5e-38 Score=312.14 Aligned_cols=179 Identities=23% Similarity=0.324 Sum_probs=151.5
Q ss_pred cceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHH
Q 044602 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLV 189 (674)
Q Consensus 110 ~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~ 189 (674)
.++ ++|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++....++.++|++|++.+++.+||.||+.
T Consensus 15 ~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~ 92 (195)
T PRK13541 15 NLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIM-QPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLK 92 (195)
T ss_pred EEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHH
Confidence 345 599999999999999999999999999999987 456999999999875432456999999988878889999998
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 044602 190 FAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSA 269 (674)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~ 269 (674)
+..... . ..++++++++.+++.+..++.+ +.||||||||++||||++.+|++++|||||+|||+.++
T Consensus 93 ~~~~~~-----~---~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~ 159 (195)
T PRK13541 93 FWSEIY-----N---SAETLYAAIHYFKLHDLLDEKC-----YSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENR 159 (195)
T ss_pred HHHHhc-----c---cHHHHHHHHHHcCCHhhhccCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 864322 1 1346778899999987777654 48999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEE
Q 044602 270 NKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLL 305 (674)
Q Consensus 270 ~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 305 (674)
..+.+.|++..++|+|+|+++|++.. .+.+|-+.
T Consensus 160 ~~l~~~l~~~~~~~~tiii~sh~~~~--i~~~~~~~ 193 (195)
T PRK13541 160 DLLNNLIVMKANSGGIVLLSSHLESS--IKSAQILQ 193 (195)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCccc--cchhheec
Confidence 99999998777779999999999864 45566553
No 317
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=9.6e-38 Score=362.45 Aligned_cols=220 Identities=30% Similarity=0.481 Sum_probs=190.7
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++++|+.. .+.+.+|+|+||++++||+++|+||||||||||+|+|+|+. +
T Consensus 4 ~l~~~nl~~~y~~~-----------------------~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~-~ 59 (648)
T PRK10535 4 LLELKDIRRSYPSG-----------------------EEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLD-K 59 (648)
T ss_pred EEEEeeEEEEeCCC-----------------------CCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C
Confidence 58999999988521 11246999999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEeCCh----h----ccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc
Q 044602 149 DVKGNITYNDIPYNP----A----LKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER 220 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~----~----~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 220 (674)
+.+|+|.+||+++.. + .++.++|++|++.+++++|+.||+.+..... ....++.++++.++++.+||.+
T Consensus 60 ~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~lgl~~ 136 (648)
T PRK10535 60 PTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLED 136 (648)
T ss_pred CCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChh
Confidence 569999999998753 2 1468999999999999999999999865332 2244556678899999999988
Q ss_pred cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhh
Q 044602 221 CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHM 300 (674)
Q Consensus 221 ~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~ 300 (674)
..|+.+ ..||||||||++|||+|+.+|++|+|||||+|||+.+++.+.+.|++++++|+|+|++||++.. .+.
T Consensus 137 ~~~~~~-----~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~--~~~ 209 (648)
T PRK10535 137 RVEYQP-----SQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQV--AAQ 209 (648)
T ss_pred hhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHH--HHh
Confidence 777765 4899999999999999999999999999999999999999999999998779999999999753 457
Q ss_pred cCEEEEEeCCEEEEecChhHHH
Q 044602 301 FDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 301 ~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
||++++|++|++++.|++++..
T Consensus 210 ~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 210 AERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred CCEEEEEECCEEEeecCccccc
Confidence 9999999999999999998775
No 318
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=3.5e-38 Score=360.85 Aligned_cols=210 Identities=20% Similarity=0.273 Sum_probs=172.1
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++||+|+|+.+. ...+++|+|+|+++++||++||+||||||||||+++|+|.+
T Consensus 336 ~~i~~~~v~f~y~~~~----------------------~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~- 392 (555)
T TIGR01194 336 DSIELKDVHMNPKAPE----------------------GSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLY- 392 (555)
T ss_pred ceEEEEEEEEEeCCCC----------------------CCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-
Confidence 4699999999986310 01245999999999999999999999999999999999977
Q ss_pred CCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 044602 148 DDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRH 223 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 223 (674)
++.+|+|.+||.++++ .+++.++||+||+.+|++ |+++|+. +...+++++++++.+++.+..+
T Consensus 393 ~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~n~~------------~~~~~~~~~~~~~~~~l~~~~~ 459 (555)
T TIGR01194 393 IPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDD-LIGPDEG------------EHASLDNAQQYLQRLEIADKVK 459 (555)
T ss_pred CCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhh-hhhcccc------------cchhHHHHHHHHHHcCCchhhc
Confidence 5569999999999863 578899999999999987 8998841 1123445778889888765443
Q ss_pred ccc-cCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHhCCcEEEEEecCCchHHHhhc
Q 044602 224 TRV-GGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQ-KVAKAGRTVITTIHQPSSRMFHMF 301 (674)
Q Consensus 224 ~~v-g~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~-~l~~~g~tvi~~~H~~~~~i~~~~ 301 (674)
... |-.....||||||||++||||++.+|+||+|||||++||+.++..+.+.+. .+..+|+|+|+++|+++ ..+.|
T Consensus 460 ~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~ 537 (555)
T TIGR01194 460 IEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELA 537 (555)
T ss_pred ccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhC
Confidence 221 111125799999999999999999999999999999999999999998664 45556899999999985 36789
Q ss_pred CEEEEEeCCEEEEe
Q 044602 302 DKLLLISEGYPVYY 315 (674)
Q Consensus 302 D~v~~L~~G~iv~~ 315 (674)
|+|++|++|++++.
T Consensus 538 d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 538 DQIIKLAAGCIVKD 551 (555)
T ss_pred CEEEEEECCEEEEe
Confidence 99999999999864
No 319
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=5.2e-38 Score=317.61 Aligned_cols=188 Identities=23% Similarity=0.413 Sum_probs=151.3
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--------hccccEEEEccCCCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--------ALKRRIGFVTQDDVLLP 180 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--------~~~~~igyv~Q~~~l~~ 180 (674)
+++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.. ..++.++|++|++.+++
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 92 (218)
T cd03290 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ-TLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLN 92 (218)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-CCCCeEEECCcccccccccccchhhcceEEEEcCCCcccc
Confidence 569999999999999999999999999999999999874 569999999987632 23467999999998885
Q ss_pred CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccCCccCccCHHHHHHHHHHHHHhhCCC
Q 044602 181 QLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCR-------HTRVGGGFIKGISGGERKRTSIGYEILVDPS 253 (674)
Q Consensus 181 ~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~ 253 (674)
.|++||+.+... ... +..+++++.++|.+.. ++... ..+..||||||||++|||+|+.+|+
T Consensus 93 -~t~~~nl~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LS~G~~qrv~laral~~~p~ 160 (218)
T cd03290 93 -ATVEENITFGSP------FNK----QRYKAVTDACSLQPDIDLLPFGDQTEIG-ERGINLSGGQRQRICVARALYQNTN 160 (218)
T ss_pred -ccHHHHHhhcCc------CCH----HHHHHHHHHhCcHHHHHhCcCccccCcc-cCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 699999987531 111 1223445555554321 12222 2356899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHH--HHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCE
Q 044602 254 LLLLDEPTSGLDSTSANKLIQ--VLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGY 311 (674)
Q Consensus 254 illLDEPTsgLD~~~~~~i~~--~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 311 (674)
+|||||||+|||+.++..+++ .++.+.+.|+|+|++||++.. + ..||++++|++|+
T Consensus 161 illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~-~-~~~d~i~~l~~G~ 218 (218)
T cd03290 161 IVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQY-L-PHADWIIAMKDGS 218 (218)
T ss_pred EEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHH-H-hhCCEEEEecCCC
Confidence 999999999999999999998 677776668999999999864 4 5699999999884
No 320
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.3e-38 Score=306.46 Aligned_cols=152 Identities=37% Similarity=0.656 Sum_probs=138.3
Q ss_pred cceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHH
Q 044602 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVE 185 (674)
Q Consensus 110 ~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~ 185 (674)
.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.. ..++.++|++|++.+++ .|+.
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t~~ 93 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD-PTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GTIR 93 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-CCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc-chHH
Confidence 58999999999999999999999999999999999874 569999999998742 35678999999998887 4999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 044602 186 ETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD 265 (674)
Q Consensus 186 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD 265 (674)
||+ ||||||||++|||+|+.+|++|+|||||+|||
T Consensus 94 e~l---------------------------------------------LS~G~~~rl~la~al~~~p~llllDEP~~gLD 128 (171)
T cd03228 94 ENI---------------------------------------------LSGGQRQRIAIARALLRDPPILILDEATSALD 128 (171)
T ss_pred HHh---------------------------------------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCC
Confidence 886 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCE
Q 044602 266 STSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGY 311 (674)
Q Consensus 266 ~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 311 (674)
+.++..+.+.|+++.+ ++|+|++||++.. +.. ||++++|++|+
T Consensus 129 ~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~~~-~d~~~~l~~g~ 171 (171)
T cd03228 129 PETEALILEALRALAK-GKTVIVIAHRLST-IRD-ADRIIVLDDGR 171 (171)
T ss_pred HHHHHHHHHHHHHhcC-CCEEEEEecCHHH-HHh-CCEEEEEcCCC
Confidence 9999999999999864 7999999999864 555 99999999885
No 321
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1e-37 Score=301.64 Aligned_cols=145 Identities=31% Similarity=0.502 Sum_probs=132.9
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-----hccccEEEEccCCCCCCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-----ALKRRIGFVTQDDVLLPQLT 183 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~~l~~~lT 183 (674)
+++|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. ..++.++|++|
T Consensus 13 ~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q--------- 82 (163)
T cd03216 13 VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLY-KPDSGEILVDGKEVSFASPRDARRAGIAMVYQ--------- 82 (163)
T ss_pred eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEECCcCCHHHHHhcCeEEEEe---------
Confidence 45999999999999999999999999999999999987 4569999999998752 24567899888
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 044602 184 VEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSG 263 (674)
Q Consensus 184 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsg 263 (674)
||||||||++|||||+.+|++++|||||+|
T Consensus 83 --------------------------------------------------LS~G~~qrl~laral~~~p~illlDEP~~~ 112 (163)
T cd03216 83 --------------------------------------------------LSVGERQMVEIARALARNARLLILDEPTAA 112 (163)
T ss_pred --------------------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCCcC
Confidence 999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEE
Q 044602 264 LDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVY 314 (674)
Q Consensus 264 LD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 314 (674)
||+.++..+.+.|++++++|+|+|+++|++. ++.+.||++++|++|++++
T Consensus 113 LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 113 LTPAEVERLFKVIRRLRAQGVAVIFISHRLD-EVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEe
Confidence 9999999999999999877999999999975 4678899999999999875
No 322
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-37 Score=351.20 Aligned_cols=204 Identities=21% Similarity=0.389 Sum_probs=168.9
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-----hccccEEEEccCC---CCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-----ALKRRIGFVTQDD---VLLP 180 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~---~l~~ 180 (674)
+.+|+|+|+++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|+++.. ..++.++|++|++ .+++
T Consensus 261 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~ 339 (491)
T PRK10982 261 QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE-KSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYA 339 (491)
T ss_pred CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc-CCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCccc
Confidence 458999999999999999999999999999999999874 469999999988742 2356799999985 4788
Q ss_pred CCCHHHHHHHHHh--h-cCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEE
Q 044602 181 QLTVEETLVFAAF--L-RLPGNMNRQQKYARVQMILKELGLE-RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLL 256 (674)
Q Consensus 181 ~lTV~e~l~~~~~--~-~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~ill 256 (674)
.+|+.+|..+... . .......+....+.++++++.+++. +..++.+ .+|||||||||+|||+|+.+|+|||
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~la~al~~~p~ill 414 (491)
T PRK10982 340 YLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQI-----GSLSGGNQQKVIIGRWLLTQPEILM 414 (491)
T ss_pred CCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCccccc-----ccCCcHHHHHHHHHHHHhcCCCEEE
Confidence 8898887433210 0 0000012233456788899999995 4556655 4899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChh
Q 044602 257 LDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKAR 319 (674)
Q Consensus 257 LDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 319 (674)
|||||+|||+.++..+.+.|++++++|+|||++|||+. ++.++||++++|++|+++..++.+
T Consensus 415 LDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l~~g~i~~~~~~~ 476 (491)
T PRK10982 415 LDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP-ELLGITDRILVMSNGLVAGIVDTK 476 (491)
T ss_pred EcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH-HHHhhCCEEEEEECCEEEEEEccc
Confidence 99999999999999999999999888999999999975 578899999999999999877553
No 323
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=1.5e-37 Score=313.35 Aligned_cols=194 Identities=18% Similarity=0.228 Sum_probs=160.9
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEE-ECCEeCChhccccEEEEccCCCCCCCCCHHHHHH
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNIT-YNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLV 189 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~-~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~ 189 (674)
+|+||||++++||+++|+||||||||||+|+|+|.. ++.+|+|. ++|.... +.|++.+++.+|++||+.
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~-~~~sG~i~~~~~~~~~---------~~~~~~l~~~ltv~enl~ 71 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLD-APDEGDFIGLRGDALP---------LGANSFILPGLTGEENAR 71 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-cCCCCCEEEecCceec---------cccccccCCcCcHHHHHH
Confidence 799999999999999999999999999999999987 45699997 7775431 335667899999999999
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 044602 190 FAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSA 269 (674)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~ 269 (674)
+..... ....++. .+.+.+.++|++..++.++ +||||||||++|||||+.+|++++|||||++||+.++
T Consensus 72 ~~~~~~---~~~~~~~---~~~~~~~~~l~~~~~~~~~-----~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~ 140 (213)
T PRK15177 72 MMASLY---GLDGDEF---SHFCYQLTQLEQCYTDRVS-----EYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQ 140 (213)
T ss_pred HHHHHc---CCCHHHH---HHHHHHHhChhHHhhchHh-----hcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHH
Confidence 876543 1222222 2334456778777777664 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHHHHHHh
Q 044602 270 NKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFSS 327 (674)
Q Consensus 270 ~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~ 327 (674)
..+.+.+.+..+ ++|+|++||++. .+.++||++++|++|++++.|+.+++.++++.
T Consensus 141 ~~~~~~l~~~~~-~~~ii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 196 (213)
T PRK15177 141 LRMQAALACQLQ-QKGLIVLTHNPR-LIKEHCHAFGVLLHGKITMCEDLAQATALFEQ 196 (213)
T ss_pred HHHHHHHHHHhh-CCcEEEEECCHH-HHHHhcCeeEEEECCeEEEeCCHHHHHHHHHH
Confidence 999998865443 578999999986 46789999999999999999999999877654
No 324
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=1.8e-37 Score=300.66 Aligned_cols=150 Identities=33% Similarity=0.533 Sum_probs=134.2
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETL 188 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l 188 (674)
+++|+|+|+++++||+++|+||||||||||+++|+|.++ +.+|+|.++|. +.++|++|++.++ ..||+||+
T Consensus 14 ~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~~~-------~~i~~~~q~~~~~-~~tv~~nl 84 (166)
T cd03223 14 RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP-WGSGRIGMPEG-------EDLLFLPQRPYLP-LGTLREQL 84 (166)
T ss_pred CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCC-------ceEEEECCCCccc-cccHHHHh
Confidence 458999999999999999999999999999999999874 56999999873 6799999998766 46999998
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTS 268 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~ 268 (674)
.+. . +++||||||||++|||||+.+|++++|||||+|||+.+
T Consensus 85 ~~~---------------------------------~-----~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~ 126 (166)
T cd03223 85 IYP---------------------------------W-----DDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEES 126 (166)
T ss_pred hcc---------------------------------C-----CCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHH
Confidence 652 1 24799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCC
Q 044602 269 ANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEG 310 (674)
Q Consensus 269 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 310 (674)
+..+.+.|+++ ++|+|++||++. ....||++++|++|
T Consensus 127 ~~~l~~~l~~~---~~tiiivsh~~~--~~~~~d~i~~l~~~ 163 (166)
T cd03223 127 EDRLYQLLKEL---GITVISVGHRPS--LWKFHDRVLDLDGE 163 (166)
T ss_pred HHHHHHHHHHh---CCEEEEEeCChh--HHhhCCEEEEEcCC
Confidence 99999999876 689999999975 35789999999865
No 325
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-37 Score=351.33 Aligned_cols=210 Identities=27% Similarity=0.420 Sum_probs=173.8
Q ss_pred EEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 044602 70 LKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD 149 (674)
Q Consensus 70 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~ 149 (674)
++++|++++|. .+++|+|+||++++||+++|+||||||||||||+|+|.++ +
T Consensus 2 l~i~~ls~~~~---------------------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~-p 53 (530)
T PRK15064 2 LSTANITMQFG---------------------------AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLE-P 53 (530)
T ss_pred EEEEEEEEEeC---------------------------CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-C
Confidence 68899998763 2469999999999999999999999999999999999874 4
Q ss_pred CccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHh-h-----------cCCC---C--------------C
Q 044602 150 VKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAF-L-----------RLPG---N--------------M 200 (674)
Q Consensus 150 ~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~-~-----------~~~~---~--------------~ 200 (674)
.+|+|.++|. +.+||++|++.+++.+||+||+.++.. . ..+. . .
T Consensus 54 ~~G~i~~~~~-------~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (530)
T PRK15064 54 SAGNVSLDPN-------ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEM 126 (530)
T ss_pred CCceEEecCC-------CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhc
Confidence 6999999873 459999999989999999999987531 0 0000 0 0
Q ss_pred CHHHHHHHHHHHHHHcCCCccc-cccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 044602 201 NRQQKYARVQMILKELGLERCR-HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKV 279 (674)
Q Consensus 201 ~~~~~~~~v~~~l~~lgL~~~~-~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l 279 (674)
...+..++++++++.+||.+.. +..+ .+|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++
T Consensus 127 ~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~- 200 (530)
T PRK15064 127 DGYTAEARAGELLLGVGIPEEQHYGLM-----SEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE- 200 (530)
T ss_pred CchhHHHHHHHHHHhCCCChhHhcCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh-
Confidence 0012245788999999997643 3333 48999999999999999999999999999999999999999999863
Q ss_pred HhCCcEEEEEecCCchHHHhhcCEEEEEeCCEE-EEecChhHHHH
Q 044602 280 AKAGRTVITTIHQPSSRMFHMFDKLLLISEGYP-VYYGKARESME 323 (674)
Q Consensus 280 ~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i-v~~G~~~~~~~ 323 (674)
.|.|||++||++. .+.+.||++++|++|++ ++.|++++..+
T Consensus 201 --~~~tiiivsHd~~-~~~~~~d~i~~l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 201 --RNSTMIIISHDRH-FLNSVCTHMADLDYGELRVYPGNYDEYMT 242 (530)
T ss_pred --CCCeEEEEeCCHH-HHHhhcceEEEEeCCEEEEecCCHHHHHH
Confidence 5899999999975 47889999999999999 58999887653
No 326
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.1e-37 Score=389.41 Aligned_cols=257 Identities=20% Similarity=0.318 Sum_probs=196.6
Q ss_pred CCcccceeeecCCCCcchhHHHHHHHHh---------------------hccccccccccCCCccc---cC-CCCceeEE
Q 044602 17 PSTMGSMQIAAGSNGFGHSIEFMSQAYL---------------------RNRYSEIDIVDESSSIE---KD-RPLPIFLK 71 (674)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~---~~-~~~~~~l~ 71 (674)
..++|++.+.+|..+.|.++..+..... .++.. ++.+.++... .. ......++
T Consensus 539 ~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~--~~L~~~~~~~~~~~~~~~~~~~I~ 616 (1495)
T PLN03232 539 LVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIE--ELLLSEERILAQNPPLQPGAPAIS 616 (1495)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHcCccccccccCCcCCCCCcEE
Confidence 3577888888899999988887544321 00100 2222111100 00 11123589
Q ss_pred EEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 044602 72 FEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVK 151 (674)
Q Consensus 72 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~ 151 (674)
++|++|+|+.+ .++++|+|+|+++++||.++|+||||||||||+++|.|.++ +.+
T Consensus 617 ~~~vsF~y~~~------------------------~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~-~~~ 671 (1495)
T PLN03232 617 IKNGYFSWDSK------------------------TSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELS-HAE 671 (1495)
T ss_pred EEeeEEEcCCC------------------------CCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCc-ccC
Confidence 99999988521 12568999999999999999999999999999999999874 457
Q ss_pred cEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHc-------CCCccccc
Q 044602 152 GNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKEL-------GLERCRHT 224 (674)
Q Consensus 152 G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~~ 224 (674)
|.+. .+++.++||+|++.+|++ ||+|||.|+.. .++ ++.+++++.. .|++..+|
T Consensus 672 G~i~--------~~~~~Iayv~Q~p~Lf~g-TIreNI~fg~~------~~~----e~~~~vl~~~~L~~di~~Lp~Gd~T 732 (1495)
T PLN03232 672 TSSV--------VIRGSVAYVPQVSWIFNA-TVRENILFGSD------FES----ERYWRAIDVTALQHDLDLLPGRDLT 732 (1495)
T ss_pred CCEE--------EecCcEEEEcCccccccc-cHHHHhhcCCc------cCH----HHHHHHHHHhCCHHHHHhCCCCCCc
Confidence 7663 257789999999999998 99999999741 122 2233333333 35778899
Q ss_pred cccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEecCCchHHHhhcCE
Q 044602 225 RVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQV-LQKVAKAGRTVITTIHQPSSRMFHMFDK 303 (674)
Q Consensus 225 ~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~-L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 303 (674)
.||+++. +||||||||++||||++++|+|++||||||+||+.++..+.+. ++.+. +|+|+|++||+++. .+.||+
T Consensus 733 ~IGe~G~-~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l-~~kT~IlvTH~~~~--l~~aD~ 808 (1495)
T PLN03232 733 EIGERGV-NISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL-KGKTRVLVTNQLHF--LPLMDR 808 (1495)
T ss_pred eecCCCc-ccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh-cCCEEEEEECChhh--HHhCCE
Confidence 9998765 6999999999999999999999999999999999999988765 55443 58999999999864 678999
Q ss_pred EEEEeCCEEEEecChhHHHH
Q 044602 304 LLLISEGYPVYYGKARESME 323 (674)
Q Consensus 304 v~~L~~G~iv~~G~~~~~~~ 323 (674)
|++|++|++++.|+++|+.+
T Consensus 809 Ii~L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 809 IILVSEGMIKEEGTFAELSK 828 (1495)
T ss_pred EEEEeCCEEEEecCHHHHHh
Confidence 99999999999999999863
No 327
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=3.6e-37 Score=352.47 Aligned_cols=212 Identities=27% Similarity=0.403 Sum_probs=174.9
Q ss_pred ceeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 67 PIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 67 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+..++++||+++|.. .+.+|+|+||++++||+++|+||||||||||||+|+|.+
T Consensus 4 ~~~l~i~~l~~~y~~--------------------------~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~ 57 (556)
T PRK11819 4 QYIYTMNRVSKVVPP--------------------------KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVD 57 (556)
T ss_pred cEEEEEeeEEEEeCC--------------------------CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456999999997731 256999999999999999999999999999999999987
Q ss_pred CCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhh---------------cCCC-CCC---------
Q 044602 147 TDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFL---------------RLPG-NMN--------- 201 (674)
Q Consensus 147 ~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~---------------~~~~-~~~--------- 201 (674)
+ +.+|+|.+++ ...+|||+|++.+++.+||.||+.++... ..+. ...
T Consensus 58 ~-p~~G~i~~~~-------~~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (556)
T PRK11819 58 K-EFEGEARPAP-------GIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGEL 129 (556)
T ss_pred C-CCCceEEecC-------CCEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHH
Confidence 4 5699999975 24699999999999999999999875320 0000 000
Q ss_pred --------HHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 044602 202 --------RQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLI 273 (674)
Q Consensus 202 --------~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~ 273 (674)
..+..++++++++.+||.. .++++ .+|||||||||+|||+|+.+|++|||||||++||+.++..+.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~-----~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~ 203 (556)
T PRK11819 130 QEIIDAADAWDLDSQLEIAMDALRCPP-WDAKV-----TKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLE 203 (556)
T ss_pred HHHHHhcCccchHHHHHHHHHhCCCCc-ccCch-----hhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHH
Confidence 0012356788999999964 56655 489999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEE-EecChhHHH
Q 044602 274 QVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPV-YYGKARESM 322 (674)
Q Consensus 274 ~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~ 322 (674)
+.|+++. .|||++||++. .+.+.||+|++|++|+++ +.|+.++..
T Consensus 204 ~~L~~~~---~tviiisHd~~-~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 249 (556)
T PRK11819 204 QFLHDYP---GTVVAVTHDRY-FLDNVAGWILELDRGRGIPWEGNYSSWL 249 (556)
T ss_pred HHHHhCC---CeEEEEeCCHH-HHHhhcCeEEEEeCCEEEEecCCHHHHH
Confidence 9998862 59999999975 577899999999999986 889887653
No 328
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=2.4e-37 Score=349.18 Aligned_cols=202 Identities=22% Similarity=0.380 Sum_probs=163.2
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-----hccccEEEEccCCCCCC--C
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-----ALKRRIGFVTQDDVLLP--Q 181 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~~l~~--~ 181 (674)
+.+|+|+||++++||+++|+||||||||||+|+|+|..+++.+|+|.++|+++.. ..++.+||++|++.++. .
T Consensus 273 ~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 352 (490)
T PRK10938 273 RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVS 352 (490)
T ss_pred eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccC
Confidence 4589999999999999999999999999999999997633258999999986531 24568999999976543 3
Q ss_pred CCHHHHHHHHHhh--cCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEe
Q 044602 182 LTVEETLVFAAFL--RLPGNMNRQQKYARVQMILKELGLER-CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLD 258 (674)
Q Consensus 182 lTV~e~l~~~~~~--~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLD 258 (674)
.|+.+++.++... ....... .+.+++++++++.+||.+ ..++++ .+|||||||||+|||||+.+|++||||
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~la~al~~~p~lllLD 426 (490)
T PRK10938 353 TSVRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAPF-----HSLSWGQQRLALIVRALVKHPTLLILD 426 (490)
T ss_pred CcHHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 4777776544211 1111112 233457889999999987 677665 489999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCC-cEEEEEecCCchHHHh-hcCEEEEEeCCEEEEecC
Q 044602 259 EPTSGLDSTSANKLIQVLQKVAKAG-RTVITTIHQPSSRMFH-MFDKLLLISEGYPVYYGK 317 (674)
Q Consensus 259 EPTsgLD~~~~~~i~~~L~~l~~~g-~tvi~~~H~~~~~i~~-~~D~v~~L~~G~iv~~G~ 317 (674)
|||+|||+.++..+.+.|++++++| .|||++||++.. +.+ .||++++|++|++++.-.
T Consensus 427 EPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~-~~~~~~d~v~~l~~G~i~~~~~ 486 (490)
T PRK10938 427 EPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAED-APACITHRLEFVPDGDIYRYVQ 486 (490)
T ss_pred CccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhh-hhhhhheeEEEecCCceEEeec
Confidence 9999999999999999999998775 579999999764 555 589999999999887643
No 329
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=8.3e-37 Score=314.36 Aligned_cols=189 Identities=24% Similarity=0.269 Sum_probs=156.3
Q ss_pred ceeeeEEEEe-----CCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHH
Q 044602 111 ILKGITGSIC-----PGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVE 185 (674)
Q Consensus 111 iL~~vs~~i~-----~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~ 185 (674)
.++|++++++ +||+++|+||||||||||+++|+|.. ++.+|+|.++|. .++|++|+...++.+||+
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~-~p~~G~i~~~g~--------~i~~~~q~~~~~~~~tv~ 79 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVL-KPDEGDIEIELD--------TVSYKPQYIKADYEGTVR 79 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCC-cCCCCeEEECCc--------eEEEecccccCCCCCCHH
Confidence 5667777765 79999999999999999999999987 456999999985 599999998777778999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 044602 186 ETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD 265 (674)
Q Consensus 186 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD 265 (674)
|++.+...... . .....+++++.++|.+..++.+ .+|||||||||+||++|+.+|++++|||||++||
T Consensus 80 e~l~~~~~~~~----~---~~~~~~~~l~~l~l~~~~~~~~-----~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD 147 (246)
T cd03237 80 DLLSSITKDFY----T---HPYFKTEIAKPLQIEQILDREV-----PELSGGELQRVAIAACLSKDADIYLLDEPSAYLD 147 (246)
T ss_pred HHHHHHhhhcc----c---cHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 99976532110 1 1124578899999987777665 4899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEE--EecChhHH
Q 044602 266 STSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPV--YYGKARES 321 (674)
Q Consensus 266 ~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv--~~G~~~~~ 321 (674)
+.++..+.+.|++++++ |+|||++||++. .+..+||++++|+++..+ ..+++.++
T Consensus 148 ~~~~~~l~~~l~~~~~~~~~tiiivsHd~~-~~~~~~d~i~~l~~~~~~~~~~~~~~~~ 205 (246)
T cd03237 148 VEQRLMASKVIRRFAENNEKTAFVVEHDII-MIDYLADRLIVFEGEPSVNGVANPPQSL 205 (246)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEcCCCeeEEEeCCchHH
Confidence 99999999999999764 899999999975 477799999999765433 44555553
No 330
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-37 Score=307.21 Aligned_cols=217 Identities=29% Similarity=0.484 Sum_probs=183.9
Q ss_pred ceeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 67 PIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 67 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+..++++||+.+++ +|+||+|+|.+|+|||-.+|+|||||||||||++++|..
T Consensus 29 ~~li~l~~v~v~r~---------------------------gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~ 81 (257)
T COG1119 29 EPLIELKNVSVRRN---------------------------GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEH 81 (257)
T ss_pred cceEEecceEEEEC---------------------------CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhccc
Confidence 34589999998663 478999999999999999999999999999999999977
Q ss_pred CCCCccEEEECCEeCC-----hhccccEEEEccC--CCCCCCCCHHHHHHHHHh--hcCCCCCCHHHHHHHHHHHHHHcC
Q 044602 147 TDDVKGNITYNDIPYN-----PALKRRIGFVTQD--DVLLPQLTVEETLVFAAF--LRLPGNMNRQQKYARVQMILKELG 217 (674)
Q Consensus 147 ~~~~~G~I~~~g~~~~-----~~~~~~igyv~Q~--~~l~~~lTV~e~l~~~~~--~~~~~~~~~~~~~~~v~~~l~~lg 217 (674)
++ .+|.+.+.|+... .++|++||+|.-. ..+.+..+|+|-+.-+.. .-.......++..+++..+++.+|
T Consensus 82 ~p-ssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g 160 (257)
T COG1119 82 PP-SSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLG 160 (257)
T ss_pred CC-CCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcc
Confidence 54 5999999998864 3689999999754 344556688887653322 111221234566778999999999
Q ss_pred CCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CcEEEEEecCCch
Q 044602 218 LERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA--GRTVITTIHQPSS 295 (674)
Q Consensus 218 L~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~--g~tvi~~~H~~~~ 295 (674)
+.+.+|+..+ .||-||||||-|||||+.+|++||||||++|||...+..+.+.|.+++.. +.++|++||++.
T Consensus 161 ~~~la~r~~~-----~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e- 234 (257)
T COG1119 161 AKHLADRPFG-----SLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE- 234 (257)
T ss_pred hhhhccCchh-----hcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh-
Confidence 9999998876 89999999999999999999999999999999999999999999999875 799999999975
Q ss_pred HHHhhcCEEEEEeCCEEEEecC
Q 044602 296 RMFHMFDKLLLISEGYPVYYGK 317 (674)
Q Consensus 296 ~i~~~~D~v~~L~~G~iv~~G~ 317 (674)
++-..+++++++++|+++++|.
T Consensus 235 Ei~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 235 EIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred hcccccceEEEeeCCceeeccc
Confidence 6888999999999999999884
No 331
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.5e-37 Score=385.48 Aligned_cols=256 Identities=18% Similarity=0.325 Sum_probs=196.6
Q ss_pred CCcccceeeecCCCCcchhHHHHHHHHh---------------------hccccccccccCCCcc--ccC--CCCceeEE
Q 044602 17 PSTMGSMQIAAGSNGFGHSIEFMSQAYL---------------------RNRYSEIDIVDESSSI--EKD--RPLPIFLK 71 (674)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~--~~~--~~~~~~l~ 71 (674)
..++|++.+..|..+.|..+..+..... .++.. ++.+.++.. ... ......++
T Consensus 539 ~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~--~~L~~~e~~~~~~~~~~~~~~~I~ 616 (1622)
T PLN03130 539 VVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLE--ELLLAEERVLLPNPPLEPGLPAIS 616 (1622)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHcCcccccccCCcccCCCCceE
Confidence 5577888888999999887765533211 01100 222211110 000 11123599
Q ss_pred EEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 044602 72 FEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVK 151 (674)
Q Consensus 72 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~ 151 (674)
++|++|+|+.+ .++++|+|+|+++++||.++|+||||||||||+++|.|.++ +.+
T Consensus 617 ~~nvsf~y~~~------------------------~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~-~~~ 671 (1622)
T PLN03130 617 IKNGYFSWDSK------------------------AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELP-PRS 671 (1622)
T ss_pred EEeeEEEccCC------------------------CCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhc-cCC
Confidence 99999988521 12568999999999999999999999999999999999874 568
Q ss_pred -cEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-------CCcccc
Q 044602 152 -GNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG-------LERCRH 223 (674)
Q Consensus 152 -G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~ 223 (674)
|+|.+ ++.|+||+|++.+|++ ||+|||.|+.. .++ ++.+++++..+ |+++.+
T Consensus 672 GG~I~l---------~~~Iayv~Q~p~Lfng-TIreNI~fg~~------~d~----e~y~~vl~a~~L~~di~~LP~Gd~ 731 (1622)
T PLN03130 672 DASVVI---------RGTVAYVPQVSWIFNA-TVRDNILFGSP------FDP----ERYERAIDVTALQHDLDLLPGGDL 731 (1622)
T ss_pred CceEEE---------cCeEEEEcCccccCCC-CHHHHHhCCCc------ccH----HHHHHHHHHhCcHHHHHhCCCccc
Confidence 89974 5679999999999997 99999999742 122 23344444433 467789
Q ss_pred ccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCcEEEEEecCCchHHHhhcC
Q 044602 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQ-VLQKVAKAGRTVITTIHQPSSRMFHMFD 302 (674)
Q Consensus 224 ~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~-~L~~l~~~g~tvi~~~H~~~~~i~~~~D 302 (674)
|.||+++. .||||||||++||||+.++|+|++||||||+||+++++.+.+ .++.+. +|+|+|++||+++ ....+|
T Consensus 732 T~IGe~G~-~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~--~l~~aD 807 (1622)
T PLN03130 732 TEIGERGV-NISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLH--FLSQVD 807 (1622)
T ss_pred ccccCCCC-CCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCHh--HHHhCC
Confidence 99998765 699999999999999999999999999999999999998865 566554 5899999999985 467899
Q ss_pred EEEEEeCCEEEEecChhHHHH
Q 044602 303 KLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 303 ~v~~L~~G~iv~~G~~~~~~~ 323 (674)
+|++|++|++++.|+++|+.+
T Consensus 808 ~Ii~L~~G~i~e~Gt~~eL~~ 828 (1622)
T PLN03130 808 RIILVHEGMIKEEGTYEELSN 828 (1622)
T ss_pred EEEEEeCCEEEEeCCHHHHHh
Confidence 999999999999999999863
No 332
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=6.7e-37 Score=318.99 Aligned_cols=226 Identities=25% Similarity=0.401 Sum_probs=194.7
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++..+... .+...++++|||++++||.+||+|.||||||-..+.+.|+++.
T Consensus 6 lL~v~nLsV~f~~~-----------------------~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~ 62 (534)
T COG4172 6 LLSIRNLSVAFHQE-----------------------GGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPS 62 (534)
T ss_pred ceeeeccEEEEecC-----------------------CcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCC
Confidence 38899999887643 2346799999999999999999999999999999999998863
Q ss_pred ----CCccEEEECCEeCC---h-hc---c-ccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 044602 149 ----DVKGNITYNDIPYN---P-AL---K-RRIGFVTQDD--VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILK 214 (674)
Q Consensus 149 ----~~~G~I~~~g~~~~---~-~~---~-~~igyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~ 214 (674)
..+|+|.++|+++- + .+ | .+|+++||+| .|-|-.|+.+.+.-..++. .++++++.++++.++|+
T Consensus 63 ~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~H--rg~~~~~Ar~r~lelL~ 140 (534)
T COG4172 63 PAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLH--RGLSRAAARARALELLE 140 (534)
T ss_pred CcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHH--hcccHHHHHHHHHHHHH
Confidence 24799999999863 2 23 3 2799999997 4777778888877665543 45778888999999999
Q ss_pred HcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCC
Q 044602 215 ELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQP 293 (674)
Q Consensus 215 ~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~ 293 (674)
.+|+++-..+. +.++++|||||||||.||.||+.+|++||.||||++||...+.+|+++|++|.++ |+.++++|||+
T Consensus 141 ~VgI~~p~~rl--~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL 218 (534)
T COG4172 141 LVGIPEPEKRL--DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDL 218 (534)
T ss_pred HcCCCchhhhh--hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccH
Confidence 99998755432 3688999999999999999999999999999999999999999999999999875 99999999998
Q ss_pred chHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 294 SSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 294 ~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
. -+.+++|||.||.+|++++.|+.+++.
T Consensus 219 ~-iVr~~ADrV~VM~~G~ivE~~~t~~lF 246 (534)
T COG4172 219 G-IVRKFADRVYVMQHGEIVETGTTETLF 246 (534)
T ss_pred H-HHHHhhhhEEEEeccEEeecCcHHHHh
Confidence 6 478899999999999999999998875
No 333
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.5e-37 Score=348.75 Aligned_cols=203 Identities=26% Similarity=0.361 Sum_probs=171.8
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++||+++|. .+.+|+|+||++++||+++|+||||||||||+|+|+|.++
T Consensus 318 ~~l~~~~l~~~~~---------------------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~ 370 (530)
T PRK15064 318 NALEVENLTKGFD---------------------------NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE 370 (530)
T ss_pred ceEEEEeeEEeeC---------------------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3588999988763 2458999999999999999999999999999999999874
Q ss_pred CCCccEEEECCEeCChhccccEEEEccCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccc
Q 044602 148 DDVKGNITYNDIPYNPALKRRIGFVTQDDV--LLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE-RCRHT 224 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~ 224 (674)
+.+|+|.++|. +.+||++|++. +++.+||.||+.+.. . . . ...++++++++.+|+. +..++
T Consensus 371 -p~~G~i~~~~~-------~~i~~~~q~~~~~~~~~~t~~~~~~~~~--~-~---~--~~~~~~~~~l~~~~l~~~~~~~ 434 (530)
T PRK15064 371 -PDSGTVKWSEN-------ANIGYYAQDHAYDFENDLTLFDWMSQWR--Q-E---G--DDEQAVRGTLGRLLFSQDDIKK 434 (530)
T ss_pred -CCCeEEEECCc-------eEEEEEcccccccCCCCCcHHHHHHHhc--c-C---C--ccHHHHHHHHHHcCCChhHhcC
Confidence 56999999873 46999999863 566789999986421 0 0 1 1235678899999994 56666
Q ss_pred cccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEE
Q 044602 225 RVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKL 304 (674)
Q Consensus 225 ~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v 304 (674)
.+ .+||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++ +.|||++|||+. .+.++||++
T Consensus 435 ~~-----~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i 505 (530)
T PRK15064 435 SV-----KVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRI 505 (530)
T ss_pred cc-----cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEE
Confidence 65 489999999999999999999999999999999999999999999876 359999999975 577889999
Q ss_pred EEEeCCEEE-EecChhHHH
Q 044602 305 LLISEGYPV-YYGKARESM 322 (674)
Q Consensus 305 ~~L~~G~iv-~~G~~~~~~ 322 (674)
++|++|+++ +.|++++..
T Consensus 506 ~~l~~g~i~~~~g~~~~~~ 524 (530)
T PRK15064 506 IEITPDGVVDFSGTYEEYL 524 (530)
T ss_pred EEEECCeEEEcCCCHHHHH
Confidence 999999998 889887754
No 334
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1e-36 Score=348.49 Aligned_cols=211 Identities=27% Similarity=0.395 Sum_probs=172.1
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|.. .+++|+|+||++++||+++|+|||||||||||++|+|..+
T Consensus 4 ~i~~~nls~~~~~--------------------------~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~- 56 (552)
T TIGR03719 4 IYTMNRVSKVVPP--------------------------KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK- 56 (552)
T ss_pred EEEEeeEEEecCC--------------------------CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-
Confidence 5899999997731 2469999999999999999999999999999999999874
Q ss_pred CCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhh-c--------C---CCCCCHH-------------
Q 044602 149 DVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFL-R--------L---PGNMNRQ------------- 203 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~-~--------~---~~~~~~~------------- 203 (674)
+.+|+|.+++ +..+|||+|++.+++.+||.||+.++... + . ......+
T Consensus 57 p~~G~i~~~~-------~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (552)
T TIGR03719 57 EFNGEARPAP-------GIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQE 129 (552)
T ss_pred CCCceEEecC-------CCEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHH
Confidence 5699999975 24699999999999999999999875321 0 0 0000010
Q ss_pred --------HHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 044602 204 --------QKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQV 275 (674)
Q Consensus 204 --------~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~ 275 (674)
....+++++++.+|++. .++.+ ..|||||||||+|||+|+.+|++|||||||++||+.++..+.+.
T Consensus 130 ~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~-----~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~ 203 (552)
T TIGR03719 130 IIDAADAWDLDRKLEIAMDALRCPP-WDADV-----TKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQH 203 (552)
T ss_pred HHHhcCcchhHHHHHHHHhhCCCCc-ccCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHH
Confidence 01235667788888853 45554 48999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEE-EecChhHHHH
Q 044602 276 LQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPV-YYGKARESME 323 (674)
Q Consensus 276 L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~~ 323 (674)
|+++ +.|||++||++. .+...||++++|++|+++ +.|+.++..+
T Consensus 204 L~~~---~~tvIiisHd~~-~~~~~~d~v~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 204 LQEY---PGTVVAVTHDRY-FLDNVAGWILELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred HHhC---CCeEEEEeCCHH-HHHhhcCeEEEEECCEEEEecCCHHHHHH
Confidence 9876 359999999975 577889999999999976 7898887644
No 335
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-36 Score=307.83 Aligned_cols=193 Identities=26% Similarity=0.435 Sum_probs=165.7
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccc-cccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKD-YKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
.++.+||+..|+.... ..+. ...+++||||++++||+++|+|+||||||||-|+|.|+.
T Consensus 4 ll~v~~l~k~f~~~~~-------------------~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~- 63 (268)
T COG4608 4 LLEVKNLKKYFPVGKG-------------------FGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLE- 63 (268)
T ss_pred eEEEeccEEEEecccc-------------------cCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCc-
Confidence 4789999998875321 0011 246999999999999999999999999999999999877
Q ss_pred CCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc
Q 044602 148 DDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVG 227 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 227 (674)
++++|+|+++|+++... . +++..+++.++|+.+||.... -
T Consensus 64 ~pt~G~i~f~g~~i~~~-~-----------------------------------~~~~~~~v~elL~~Vgl~~~~----~ 103 (268)
T COG4608 64 EPTSGEILFEGKDITKL-S-----------------------------------KEERRERVLELLEKVGLPEEF----L 103 (268)
T ss_pred CCCCceEEEcCcchhhc-c-----------------------------------hhHHHHHHHHHHHHhCCCHHH----h
Confidence 55799999999986431 1 345567899999999986522 2
Q ss_pred CCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEE
Q 044602 228 GGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLL 306 (674)
Q Consensus 228 ~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~ 306 (674)
++++++||||||||++|||||+.+|+++++|||||+||...+.+++++|+++.++ |.|.++++||.+ .+..++|||.+
T Consensus 104 ~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~-vv~~isdri~V 182 (268)
T COG4608 104 YRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLS-VVRYISDRIAV 182 (268)
T ss_pred hcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHH-hhhhhcccEEE
Confidence 2467899999999999999999999999999999999999999999999999875 999999999976 57889999999
Q ss_pred EeCCEEEEecChhHHH
Q 044602 307 ISEGYPVYYGKARESM 322 (674)
Q Consensus 307 L~~G~iv~~G~~~~~~ 322 (674)
|..|++|+.|+.+++.
T Consensus 183 My~G~iVE~g~~~~~~ 198 (268)
T COG4608 183 MYLGKIVEIGPTEEVF 198 (268)
T ss_pred EecCceeEecCHHHHh
Confidence 9999999999999885
No 336
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=9.8e-37 Score=304.56 Aligned_cols=208 Identities=28% Similarity=0.403 Sum_probs=182.1
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh---hccccEEEEc-cCCCCCCCCCH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP---ALKRRIGFVT-QDDVLLPQLTV 184 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~---~~~~~igyv~-Q~~~l~~~lTV 184 (674)
..+.+|+||+|++|++++++|||||||||+||+|+|++.| .+|.|.++|.+.-. +.-+.+++|+ |...+.-.+.+
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p-~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~ 115 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLP-TSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPA 115 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCcccc-CCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechh
Confidence 3589999999999999999999999999999999998854 69999999987532 4456788876 55666667778
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 044602 185 EETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGL 264 (674)
Q Consensus 185 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgL 264 (674)
.|.+....... +++.++-+++.+.+.+.++|+...+.++ +.||-|||.|+.||.+|+++|+||||||||-||
T Consensus 116 ~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~v-----r~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgL 187 (325)
T COG4586 116 LDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWPV-----RKLSLGQRMRAELAAALLHPPKVLFLDEPTVGL 187 (325)
T ss_pred hhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhhh-----hhccchHHHHHHHHHHhcCCCcEEEecCCccCc
Confidence 88877654443 4677888899999999999998888775 589999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHh-CCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHHHHHH
Q 044602 265 DSTSANKLIQVLQKVAK-AGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFS 326 (674)
Q Consensus 265 D~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~ 326 (674)
|..++..|.+.|++..+ ++.||+.+||+.+ ++.++||||++|+.|+++|.|+.+++.+-|.
T Consensus 188 DV~aq~~ir~Flke~n~~~~aTVllTTH~~~-di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~ 249 (325)
T COG4586 188 DVNAQANIREFLKEYNEERQATVLLTTHIFD-DIATLCDRVLLIDQGQLVFDGTLAQLQEQFG 249 (325)
T ss_pred chhHHHHHHHHHHHHHHhhCceEEEEecchh-hHHHhhhheEEeeCCcEeecccHHHHHHHhC
Confidence 99999999999999876 4899999999986 5899999999999999999999999987664
No 337
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=7.3e-36 Score=341.66 Aligned_cols=205 Identities=22% Similarity=0.356 Sum_probs=168.8
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++||++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|..+
T Consensus 323 ~~l~~~~l~~~~~---------------------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~ 375 (556)
T PRK11819 323 KVIEAENLSKSFG---------------------------DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ 375 (556)
T ss_pred eEEEEEeEEEEEC---------------------------CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4689999988763 2469999999999999999999999999999999999874
Q ss_pred CCCccEEEECCEeCChhccccEEEEccCC-CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccc
Q 044602 148 DDVKGNITYNDIPYNPALKRRIGFVTQDD-VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER-CRHTR 225 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~~~~~~igyv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ 225 (674)
+.+|+|.+++. ..+||++|++ .+++.+||.||+.++..... .... ...++++++.+|+.+ ..++.
T Consensus 376 -p~~G~i~~~~~-------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~ 442 (556)
T PRK11819 376 -PDSGTIKIGET-------VKLAYVDQSRDALDPNKTVWEEISGGLDIIK---VGNR--EIPSRAYVGRFNFKGGDQQKK 442 (556)
T ss_pred -CCCeEEEECCc-------eEEEEEeCchhhcCCCCCHHHHHHhhccccc---cccc--HHHHHHHHHhCCCChhHhcCc
Confidence 56999999542 2599999996 78888999999998643211 1111 123457899999964 45665
Q ss_pred ccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEE
Q 044602 226 VGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLL 305 (674)
Q Consensus 226 vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 305 (674)
+ .+|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++. | |||++||++. .+.++||+++
T Consensus 443 ~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~ 513 (556)
T PRK11819 443 V-----GVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHIL 513 (556)
T ss_pred h-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEE
Confidence 5 4899999999999999999999999999999999999999999999872 4 8999999975 5788999999
Q ss_pred EEeC-CEEE-EecChhHH
Q 044602 306 LISE-GYPV-YYGKARES 321 (674)
Q Consensus 306 ~L~~-G~iv-~~G~~~~~ 321 (674)
+|++ |++. +.|+.++.
T Consensus 514 ~l~~~g~~~~~~g~~~~~ 531 (556)
T PRK11819 514 AFEGDSQVEWFEGNFQEY 531 (556)
T ss_pred EEECCCeEEEecCCHHHH
Confidence 9985 7876 56766543
No 338
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.6e-36 Score=287.95 Aligned_cols=207 Identities=27% Similarity=0.412 Sum_probs=180.9
Q ss_pred cccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECC-EeCCh-----hccccEEEEccCCCCCCC
Q 044602 108 YKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYND-IPYNP-----ALKRRIGFVTQDDVLLPQ 181 (674)
Q Consensus 108 ~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g-~~~~~-----~~~~~igyv~Q~~~l~~~ 181 (674)
.-.+|+|+||++.+||+-+|+|||||||||++++|+|.. ++.+|+++++| .++.. ..|..||-=||.|..|+.
T Consensus 17 GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKt-rp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ 95 (249)
T COG4674 17 GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKT-RPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFEN 95 (249)
T ss_pred ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccC-CCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhh
Confidence 356899999999999999999999999999999999976 55689999999 67652 246679999999999999
Q ss_pred CCHHHHHHHHHhhcCCC-----CCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEE
Q 044602 182 LTVEETLVFAAFLRLPG-----NMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLL 256 (674)
Q Consensus 182 lTV~e~l~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~ill 256 (674)
+||+|||..+.....+- .-.+.+.+++++++|+..||.+.++...+ .||-||||++.|+.-++.+|++|+
T Consensus 96 ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~-----~LSHGqKQwLEIGMll~Q~P~lLL 170 (249)
T COG4674 96 LTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAA-----LLSHGQKQWLEIGMLLAQDPKLLL 170 (249)
T ss_pred ccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhh-----hhccchhhhhhhheeeccCCcEEE
Confidence 99999999886432110 01224556789999999999999888765 799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 257 LDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 257 LDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
||||++|+--+...+.-++|+.++. +++|+++-||+. .+.+++|+|.+|++|.+...|+.+++.
T Consensus 171 lDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM~-Fvr~~A~~VTVlh~G~VL~EGsld~v~ 234 (249)
T COG4674 171 LDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDMG-FVREIADKVTVLHEGSVLAEGSLDEVQ 234 (249)
T ss_pred ecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccHH-HHHHhhheeEEEeccceeecccHHHhh
Confidence 9999999999999999999999985 799999999975 588999999999999999999998873
No 339
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1.4e-35 Score=339.31 Aligned_cols=204 Identities=23% Similarity=0.372 Sum_probs=168.0
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++|++++|. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+
T Consensus 321 ~~l~~~~l~~~~~---------------------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~ 373 (552)
T TIGR03719 321 KVIEAENLSKGFG---------------------------DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ 373 (552)
T ss_pred eEEEEeeEEEEEC---------------------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 3588999988763 2469999999999999999999999999999999999874
Q ss_pred CCCccEEEECCEeCChhccccEEEEccCC-CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccc
Q 044602 148 DDVKGNITYNDIPYNPALKRRIGFVTQDD-VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER-CRHTR 225 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~~~~~~igyv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ 225 (674)
+.+|+|.+++. ..+||++|++ .+++.+||.||+.++.... ..... ..+++++++.+|+.+ ..++.
T Consensus 374 -p~~G~i~~~~~-------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~--~~~~~~~l~~~~l~~~~~~~~ 440 (552)
T TIGR03719 374 -PDSGTIKIGET-------VKLAYVDQSRDALDPNKTVWEEISGGLDII---QLGKR--EVPSRAYVGRFNFKGSDQQKK 440 (552)
T ss_pred -CCCeEEEECCc-------eEEEEEeCCccccCCCCcHHHHHHhhcccc---ccCcc--hHHHHHHHHhCCCChhHhcCc
Confidence 56999999542 2599999996 4788899999999864321 11111 224567899999964 45665
Q ss_pred ccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEE
Q 044602 226 VGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLL 305 (674)
Q Consensus 226 vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 305 (674)
+ .+|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++. + |||++|||+. .+.++||+++
T Consensus 441 ~-----~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~~-~~~~~~d~i~ 511 (552)
T TIGR03719 441 V-----GQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--G-CAVVISHDRW-FLDRIATHIL 511 (552)
T ss_pred h-----hhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCHH-HHHHhCCEEE
Confidence 5 4899999999999999999999999999999999999999999999873 4 8999999975 5778999999
Q ss_pred EEeC-CEEE-EecChhH
Q 044602 306 LISE-GYPV-YYGKARE 320 (674)
Q Consensus 306 ~L~~-G~iv-~~G~~~~ 320 (674)
+|++ |+++ +.|+.++
T Consensus 512 ~l~~~~~~~~~~g~~~~ 528 (552)
T TIGR03719 512 AFEGDSHVEWFEGNYSE 528 (552)
T ss_pred EEECCCeEEEeCCCHHH
Confidence 9986 5876 5676654
No 340
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=1.1e-35 Score=340.41 Aligned_cols=182 Identities=29% Similarity=0.366 Sum_probs=158.8
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHH
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVF 190 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~ 190 (674)
.|+++|+++++||+++|+||||||||||+|+|+|.++ +.+|+|.++ ..++|++|+..+++.+||+||+.+
T Consensus 354 ~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~-p~~G~I~~~---------~~i~y~~Q~~~~~~~~tv~e~l~~ 423 (590)
T PRK13409 354 SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK-PDEGEVDPE---------LKISYKPQYIKPDYDGTVEDLLRS 423 (590)
T ss_pred EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEEe---------eeEEEecccccCCCCCcHHHHHHH
Confidence 4899999999999999999999999999999999884 569999986 159999999888888999999987
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 044602 191 AAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSAN 270 (674)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~ 270 (674)
.... ... ...++++++.++|.+..++.++ +|||||||||+||++|+.+|++|||||||+|||+.++.
T Consensus 424 ~~~~-----~~~---~~~~~~~L~~l~l~~~~~~~~~-----~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~ 490 (590)
T PRK13409 424 ITDD-----LGS---SYYKSEIIKPLQLERLLDKNVK-----DLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRL 490 (590)
T ss_pred Hhhh-----cCh---HHHHHHHHHHCCCHHHHhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHH
Confidence 5321 111 1256889999999887777654 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecC
Q 044602 271 KLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGK 317 (674)
Q Consensus 271 ~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 317 (674)
.+.+.|++++++ |+|+|++|||+. .+..+|||+++|+ |++...|.
T Consensus 491 ~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~-~~~~~~g~ 536 (590)
T PRK13409 491 AVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE-GEPGKHGH 536 (590)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc-Ccceeeee
Confidence 999999999874 899999999975 4778999999996 48777775
No 341
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=6.1e-36 Score=309.34 Aligned_cols=189 Identities=23% Similarity=0.378 Sum_probs=159.1
Q ss_pred cceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEE-----------ECCEeCCh---hcc---ccEEEE
Q 044602 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNIT-----------YNDIPYNP---ALK---RRIGFV 172 (674)
Q Consensus 110 ~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~-----------~~g~~~~~---~~~---~~igyv 172 (674)
.+|+|+| .+++||+++|+||||||||||||+|+|.++ +++|+|. ++|+++.. ..+ ..++|+
T Consensus 15 ~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~-p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~ 92 (255)
T cd03236 15 FKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLK-PNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVK 92 (255)
T ss_pred hhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcC-CCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeee
Confidence 5899999 599999999999999999999999999874 5699996 78887643 122 247999
Q ss_pred ccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCC
Q 044602 173 TQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDP 252 (674)
Q Consensus 173 ~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P 252 (674)
+|+..+++. ++.+++.+.. ......+.+.++++.+||.+..++.+ ..||||||||++|||+|+.+|
T Consensus 93 ~~~~~~~~~-~~~~~i~~~l--------~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~laral~~~p 158 (255)
T cd03236 93 PQYVDLIPK-AVKGKVGELL--------KKKDERGKLDELVDQLELRHVLDRNI-----DQLSGGELQRVAIAAALARDA 158 (255)
T ss_pred cchhccCch-HHHHHHHHHh--------chhHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHhCC
Confidence 999888885 8888887642 12233467789999999987776654 489999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEec
Q 044602 253 SLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYG 316 (674)
Q Consensus 253 ~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 316 (674)
++++|||||++||+.++..+.+.|++++++|+|||+++|++. .+.++||++++|+ |++++.|
T Consensus 159 ~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~-~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 159 DFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLA-VLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEC-CCCCcce
Confidence 999999999999999999999999999877999999999975 4677899999995 6666544
No 342
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=5.8e-35 Score=290.16 Aligned_cols=239 Identities=22% Similarity=0.300 Sum_probs=195.6
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+..++...... .........+..... ......+|+||||++++||.++|+|+||||||||||+|+|.+ +
T Consensus 3 ~I~~~~V~k~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~-~ 78 (249)
T COG1134 3 VIKVSNVSKKFRIYHEKS--YSLKKRLKGLAKGGR-KVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIY-K 78 (249)
T ss_pred EEEeeceeEEEecchhhh--hhHHHHHHHHhcCCC-CcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCcc-C
Confidence 578999998887643110 000111111111111 234467999999999999999999999999999999999987 5
Q ss_pred CCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC
Q 044602 149 DVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGG 228 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 228 (674)
|++|+|.++|+-... +-- ...+-|.+|.+||+.+-..+. ++++++.+++++++++.-+|.+..|.+|
T Consensus 79 Pt~G~v~v~G~v~~l-i~l-------g~Gf~pelTGreNi~l~~~~~---G~~~~ei~~~~~eIieFaELG~fi~~Pv-- 145 (249)
T COG1134 79 PTSGKVKVTGKVAPL-IEL-------GAGFDPELTGRENIYLRGLIL---GLTRKEIDEKVDEIIEFAELGDFIDQPV-- 145 (249)
T ss_pred CCCceEEEcceEehh-hhc-------ccCCCcccchHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHHhhCch--
Confidence 569999999974321 111 123456789999999876543 4678999999999999999999999987
Q ss_pred CccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEe
Q 044602 229 GFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLIS 308 (674)
Q Consensus 229 ~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 308 (674)
+.+|.||+-|+++|.|.-.+|+|||+||-.+--|+.-+++-.+.++++.++++|+|+++|++. .+.++|||+++|+
T Consensus 146 ---ktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~-~I~~~Cd~~i~l~ 221 (249)
T COG1134 146 ---KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLG-AIKQYCDRAIWLE 221 (249)
T ss_pred ---hhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhcCeeEEEe
Confidence 489999999999999999999999999999999999999999999999888899999999975 5899999999999
Q ss_pred CCEEEEecChhHHHHHHHhC
Q 044602 309 EGYPVYYGKARESMEYFSSL 328 (674)
Q Consensus 309 ~G~iv~~G~~~~~~~~f~~~ 328 (674)
+|++.+.|+++++.++|+..
T Consensus 222 ~G~i~~~G~~~~vi~~Y~~~ 241 (249)
T COG1134 222 HGQIRMEGSPEEVIPAYEED 241 (249)
T ss_pred CCEEEEcCCHHHHHHHHHHh
Confidence 99999999999999988764
No 343
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-35 Score=339.15 Aligned_cols=189 Identities=26% Similarity=0.431 Sum_probs=159.8
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCC--CCCCCCCHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDD--VLLPQLTVEE 186 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~--~l~~~lTV~e 186 (674)
+.+|+|+||+|++||+++|+||||||||||||+|+|.. ++++|+|.+++. ..+||++|+. .+.+..|+.+
T Consensus 325 ~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~-~p~~G~i~~~~~-------~~igy~~Q~~~~~l~~~~~~~~ 396 (638)
T PRK10636 325 RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGEL-APVSGEIGLAKG-------IKLGYFAQHQLEFLRADESPLQ 396 (638)
T ss_pred eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCeEEECCC-------EEEEEecCcchhhCCccchHHH
Confidence 56999999999999999999999999999999999987 456999999742 2599999974 4556678888
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 044602 187 TLVFAAFLRLPGNMNRQQKYARVQMILKELGLER-CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD 265 (674)
Q Consensus 187 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD 265 (674)
++.-. . .....++++++|+.+++.. ..+++++ .|||||||||+||++|+.+|++|||||||+|||
T Consensus 397 ~~~~~---~------~~~~~~~~~~~L~~~~l~~~~~~~~~~-----~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD 462 (638)
T PRK10636 397 HLARL---A------PQELEQKLRDYLGGFGFQGDKVTEETR-----RFSGGEKARLVLALIVWQRPNLLLLDEPTNHLD 462 (638)
T ss_pred HHHHh---C------chhhHHHHHHHHHHcCCChhHhcCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 76421 1 1123456889999999963 5666654 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEE-EecChhHHHH
Q 044602 266 STSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPV-YYGKARESME 323 (674)
Q Consensus 266 ~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~~ 323 (674)
+.+...+.+.|+++ .| |||++|||+. .+.++||++++|++|+++ +.|+.++..+
T Consensus 463 ~~~~~~l~~~L~~~--~g-tvi~vSHd~~-~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 463 LDMRQALTEALIDF--EG-ALVVVSHDRH-LLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred HHHHHHHHHHHHHc--CC-eEEEEeCCHH-HHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 99999999999987 34 9999999975 578899999999999997 8899887643
No 344
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=2.6e-35 Score=342.52 Aligned_cols=198 Identities=21% Similarity=0.342 Sum_probs=161.1
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||++.++. ++++|+|+|+++++||+++|+||||||||||+|+|+|+. +
T Consensus 451 ~i~~~nv~~~~~~--------------------------~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~-~ 503 (659)
T TIGR00954 451 GIKFENIPLVTPN--------------------------GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELW-P 503 (659)
T ss_pred eEEEEeeEEECCC--------------------------CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-C
Confidence 5899999986631 246999999999999999999999999999999999987 5
Q ss_pred CCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc-
Q 044602 149 DVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVG- 227 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg- 227 (674)
+.+|+|.+++ +++++||+|++.+++. |++||+.++....... .....+++++++++.+++.+..+++.|
T Consensus 504 ~~~G~i~~~~-------~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~i~~~l~~~~l~~~~~~~~g~ 573 (659)
T TIGR00954 504 VYGGRLTKPA-------KGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMK--RRGLSDKDLEQILDNVQLTHILEREGGW 573 (659)
T ss_pred CCCCeEeecC-------CCcEEEECCCCCCCCc-CHHHHHhcCCChhhhh--ccCCCHHHHHHHHHHcCCHHHHhhcCCc
Confidence 5689998864 5679999999999988 9999998864221000 001123457788999998765443221
Q ss_pred ---CCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEE
Q 044602 228 ---GGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKL 304 (674)
Q Consensus 228 ---~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v 304 (674)
......||||||||++|||||+++|++++|||||+|||+.++..+.+.+++ .|+|+|+++|+++. .+.||++
T Consensus 574 ~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~~--~~~~d~i 648 (659)
T TIGR00954 574 SAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKSL--WKYHEYL 648 (659)
T ss_pred ccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchHH--HHhCCEE
Confidence 012458999999999999999999999999999999999999999998876 38999999999864 5789999
Q ss_pred EEEe
Q 044602 305 LLIS 308 (674)
Q Consensus 305 ~~L~ 308 (674)
++|+
T Consensus 649 l~l~ 652 (659)
T TIGR00954 649 LYMD 652 (659)
T ss_pred EEEe
Confidence 9997
No 345
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.7e-35 Score=285.22 Aligned_cols=203 Identities=27% Similarity=0.415 Sum_probs=169.2
Q ss_pred ccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--h--ccccEEEEccCC--CCCC
Q 044602 107 DYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--A--LKRRIGFVTQDD--VLLP 180 (674)
Q Consensus 107 ~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--~--~~~~igyv~Q~~--~l~~ 180 (674)
..+++|+++|++|..|+++-|+|.||||||||+|+|+|.+. +++|+|.++|++++. . ....++-|+||| ..++
T Consensus 17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~-~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~ 95 (263)
T COG1101 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK-PTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAP 95 (263)
T ss_pred hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc-cCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcc
Confidence 35789999999999999999999999999999999999884 569999999999874 1 223578899997 4799
Q ss_pred CCCHHHHHHHHHhhcCCCCCCH---HHHHHHHHHHHHHc--CCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEE
Q 044602 181 QLTVEETLVFAAFLRLPGNMNR---QQKYARVQMILKEL--GLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLL 255 (674)
Q Consensus 181 ~lTV~e~l~~~~~~~~~~~~~~---~~~~~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~il 255 (674)
.|||.||+.++..--..+.... ....+...+-++.+ ||++..++++| -|||||||-++++.|-++.|+||
T Consensus 96 ~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~ig-----lLSGGQRQalsL~MAtl~~pkiL 170 (263)
T COG1101 96 ELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIG-----LLSGGQRQALSLLMATLHPPKIL 170 (263)
T ss_pred cccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhh-----hccchHHHHHHHHHHhcCCCcEE
Confidence 9999999998764321222222 22223334455554 67888888887 69999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEec
Q 044602 256 LLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYG 316 (674)
Q Consensus 256 lLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 316 (674)
+|||=|++|||.++..+++.-.++.++ +.|.+++||...+ ...+-+|.++|++|+||.+-
T Consensus 171 LLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~-Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 171 LLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMED-ALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred EecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHH-HHhhCCeEEEEeCCeEEEEc
Confidence 999999999999999999999988764 7899999999764 77899999999999999764
No 346
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=8.3e-35 Score=283.90 Aligned_cols=157 Identities=26% Similarity=0.381 Sum_probs=132.8
Q ss_pred cccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHH
Q 044602 108 YKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEET 187 (674)
Q Consensus 108 ~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~ 187 (674)
.+++|+|+||++++||+++|+||||||||||||++.+ .+|+|.++|... ...++.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~-----~~G~v~~~~~~~-~~~~~~~~~~~q------------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY-----ASGKARLISFLP-KFSRNKLIFIDQ------------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh-----cCCcEEECCccc-ccccccEEEEhH-------------
Confidence 4679999999999999999999999999999999863 389999988732 222345888877
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCccCccCHHHHHHHHHHHHHhhC--CCEEEEeCCCCCC
Q 044602 188 LVFAAFLRLPGNMNRQQKYARVQMILKELGLER-CRHTRVGGGFIKGISGGERKRTSIGYEILVD--PSLLLLDEPTSGL 264 (674)
Q Consensus 188 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~--P~illLDEPTsgL 264 (674)
.++++.++|.. ..+++ ++.||||||||++|||+|+.+ |++++|||||++|
T Consensus 68 ----------------------~~~l~~~~L~~~~~~~~-----~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~L 120 (176)
T cd03238 68 ----------------------LQFLIDVGLGYLTLGQK-----LSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGL 120 (176)
T ss_pred ----------------------HHHHHHcCCCccccCCC-----cCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccC
Confidence 24567788865 35554 358999999999999999999 9999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEE
Q 044602 265 DSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYP 312 (674)
Q Consensus 265 D~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 312 (674)
|+.++..+.+.|+++++.|+|||++||++.. .+.||++++|++|+.
T Consensus 121 D~~~~~~l~~~l~~~~~~g~tvIivSH~~~~--~~~~d~i~~l~~g~~ 166 (176)
T cd03238 121 HQQDINQLLEVIKGLIDLGNTVILIEHNLDV--LSSADWIIDFGPGSG 166 (176)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH--HHhCCEEEEECCCCC
Confidence 9999999999999998779999999999754 467999999976543
No 347
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.1e-34 Score=336.55 Aligned_cols=191 Identities=28% Similarity=0.404 Sum_probs=159.7
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCC-CCCCCCCHHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDD-VLLPQLTVEET 187 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~-~l~~~lTV~e~ 187 (674)
+++|+|+||+|++||+++|+||||||||||||+|+|.+ ++.+|+|.+ |.++ .+||++|+. .+++.+||.||
T Consensus 332 ~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~-~p~~G~i~~-~~~~------~i~y~~q~~~~l~~~~tv~e~ 403 (635)
T PRK11147 332 KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQL-QADSGRIHC-GTKL------EVAYFDQHRAELDPEKTVMDN 403 (635)
T ss_pred eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCCcEEEE-CCCc------EEEEEeCcccccCCCCCHHHH
Confidence 46999999999999999999999999999999999987 456999998 4332 599999985 68899999999
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 044602 188 LVFAAFLRLPGNMNRQQKYARVQMILKELGLE-RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDS 266 (674)
Q Consensus 188 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~ 266 (674)
+.++.... ... .....+.++++.+++. +..+++++ .|||||||||+||++|+.+|++|||||||+|||+
T Consensus 404 l~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~ 473 (635)
T PRK11147 404 LAEGKQEV---MVN--GRPRHVLGYLQDFLFHPKRAMTPVK-----ALSGGERNRLLLARLFLKPSNLLILDEPTNDLDV 473 (635)
T ss_pred HHhhcccc---ccc--chHHHHHHHHHhcCCCHHHHhChhh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence 98753211 011 1234678899999986 45666654 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEe-CCEEE-EecChhHH
Q 044602 267 TSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLIS-EGYPV-YYGKARES 321 (674)
Q Consensus 267 ~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~-~G~iv-~~G~~~~~ 321 (674)
.+...+.+.|+++ +.|||++|||.. .+..+||++++|+ +|++. |.|+.++-
T Consensus 474 ~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 474 ETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred HHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 9999999999876 459999999965 5778999999998 89986 46776654
No 348
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.4e-35 Score=351.37 Aligned_cols=222 Identities=23% Similarity=0.356 Sum_probs=183.6
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++|+|++.+|+. +...||||||++|+|||.+||+|+.|||||||.++|-.+.
T Consensus 1137 G~I~f~~~~~RYrp-------------------------~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~- 1190 (1381)
T KOG0054|consen 1137 GEIEFEDLSLRYRP-------------------------NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLV- 1190 (1381)
T ss_pred CeEEEEEeEEEeCC-------------------------CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhc-
Confidence 57999999999863 2356999999999999999999999999999999999655
Q ss_pred CCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 044602 148 DDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRH 223 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 223 (674)
++.+|+|.+||.++.+ ++|++++.+||||.+|.+ |||.||.=.... .+..+.++-.+...++.++ .++...|
T Consensus 1191 e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsG-TvR~NLDPf~e~-sD~~IW~ALe~~~Lk~~v~--~~p~~Ld 1266 (1381)
T KOG0054|consen 1191 EPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSG-TVRFNLDPFDEY-SDDEIWEALERCQLKDVVS--SLPGGLD 1266 (1381)
T ss_pred CccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecC-ccccccCccccc-CHHHHHHHHHHhChHHHHh--hCCcCCC
Confidence 5569999999999975 789999999999999999 999999632110 0001111111222333444 3456688
Q ss_pred ccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCE
Q 044602 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDK 303 (674)
Q Consensus 224 ~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 303 (674)
+.|.+.+ .++|-||||.+|+||||+++.+||+|||+|++.|+++-..|.+.|++-- +++|||.+.|+..+ +. -+||
T Consensus 1267 ~~v~egG-~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHRl~T-Vm-d~Dr 1342 (1381)
T KOG0054|consen 1267 SEVSEGG-ENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHRLNT-VM-DSDR 1342 (1381)
T ss_pred ceecCCC-ccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeeccch-hh-hcCe
Confidence 8887655 4699999999999999999999999999999999999999999999854 38999999999987 33 4899
Q ss_pred EEEEeCCEEEEecChhHHHH
Q 044602 304 LLLISEGYPVYYGKARESME 323 (674)
Q Consensus 304 v~~L~~G~iv~~G~~~~~~~ 323 (674)
|+||++|+++++|+|+++++
T Consensus 1343 VlVld~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1343 VLVLDAGRVVEFDSPAELLS 1362 (1381)
T ss_pred EEEeeCCeEeecCChHHHHh
Confidence 99999999999999999974
No 349
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=1.4e-34 Score=274.02 Aligned_cols=132 Identities=37% Similarity=0.612 Sum_probs=122.1
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETL 188 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l 188 (674)
+++|+|+||++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+ +.++|++|
T Consensus 13 ~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~-~~~~G~i~~~~~-------~~i~~~~~-------------- 70 (144)
T cd03221 13 KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGEL-EPDEGIVTWGST-------VKIGYFEQ-------------- 70 (144)
T ss_pred ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCC-CCCceEEEECCe-------EEEEEEcc--------------
Confidence 35899999999999999999999999999999999987 456999999984 46999998
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTS 268 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~ 268 (674)
||+||+||++|||||+.+|++++|||||+|||+.+
T Consensus 71 ---------------------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~ 105 (144)
T cd03221 71 ---------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLES 105 (144)
T ss_pred ---------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCE
Q 044602 269 ANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGY 311 (674)
Q Consensus 269 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 311 (674)
+..+.+.|+++ ++|+|+++|++. ++.++||++++|++|+
T Consensus 106 ~~~l~~~l~~~---~~til~~th~~~-~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 106 IEALEEALKEY---PGTVILVSHDRY-FLDQVATKIIELEDGK 144 (144)
T ss_pred HHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEEeCCC
Confidence 99999999886 479999999975 4678899999999985
No 350
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=7.6e-35 Score=364.55 Aligned_cols=209 Identities=23% Similarity=0.399 Sum_probs=171.9
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++|++|+|+. +.+++|+|+|+++++||+++|+||||||||||+++|+|.+ +
T Consensus 636 ~i~~~~~~~~~~~-------------------------~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~-~ 689 (1522)
T TIGR00957 636 SITVHNATFTWAR-------------------------DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEM-D 689 (1522)
T ss_pred cEEEEEeEEEcCC-------------------------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-c
Confidence 6999999998742 1246899999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHH---HHHHHcC-CCccccc
Q 044602 149 DVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQ---MILKELG-LERCRHT 224 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~---~~l~~lg-L~~~~~~ 224 (674)
+.+|+|.++| .++||+|++.+++. ||+||+.|+.. .++++. +++. ++.+.++ +++..+|
T Consensus 690 ~~~G~i~~~g---------~i~yv~Q~~~l~~~-Ti~eNI~~g~~------~~~~~~-~~~~~~~~l~~~l~~~~~g~~t 752 (1522)
T TIGR00957 690 KVEGHVHMKG---------SVAYVPQQAWIQND-SLRENILFGKA------LNEKYY-QQVLEACALLPDLEILPSGDRT 752 (1522)
T ss_pred cCCcEEEECC---------EEEEEcCCccccCC-cHHHHhhcCCc------cCHHHH-HHHHHHhCCHHHHHhcCCCCCc
Confidence 5699999987 49999999998875 99999998732 122211 1221 1223333 3556678
Q ss_pred cccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--hCCcEEEEEecCCchHHHhhcC
Q 044602 225 RVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVA--KAGRTVITTIHQPSSRMFHMFD 302 (674)
Q Consensus 225 ~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~--~~g~tvi~~~H~~~~~i~~~~D 302 (674)
.+|+.+ .+||||||||++||||++.+|+|++||||||+||+.++..+.+.+.+.. .+|+|+|++||++.. ...||
T Consensus 753 ~ig~~g-~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~--l~~~D 829 (1522)
T TIGR00957 753 EIGEKG-VNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISY--LPQVD 829 (1522)
T ss_pred eecCCC-CCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhh--hhhCC
Confidence 888654 5799999999999999999999999999999999999999999986532 348999999999864 45699
Q ss_pred EEEEEeCCEEEEecChhHHHH
Q 044602 303 KLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 303 ~v~~L~~G~iv~~G~~~~~~~ 323 (674)
+|++|++|++++.|+++++.+
T Consensus 830 ~ii~l~~G~i~~~g~~~~l~~ 850 (1522)
T TIGR00957 830 VIIVMSGGKISEMGSYQELLQ 850 (1522)
T ss_pred EEEEecCCeEEeeCCHHHHHh
Confidence 999999999999999998863
No 351
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=2.9e-34 Score=334.34 Aligned_cols=207 Identities=24% Similarity=0.390 Sum_probs=166.4
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++||++.|+ +.+.+|+|+||++++||+++|+||||||||||||+|+|.++
T Consensus 507 ~~L~~~~ls~~y~--------------------------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~ 560 (718)
T PLN03073 507 PIISFSDASFGYP--------------------------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ 560 (718)
T ss_pred ceEEEEeeEEEeC--------------------------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4588999998773 12458999999999999999999999999999999999874
Q ss_pred CCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccc
Q 044602 148 DDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER-CRHTRV 226 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v 226 (674)
+.+|+|.+++ +..+||++|++ .+.+++.++..+......+ ... .++++++++.+|+.+ ..++++
T Consensus 561 -p~~G~I~~~~-------~~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~-~~~----~~~i~~~L~~~gl~~~~~~~~~ 625 (718)
T PLN03073 561 -PSSGTVFRSA-------KVRMAVFSQHH--VDGLDLSSNPLLYMMRCFP-GVP----EQKLRAHLGSFGVTGNLALQPM 625 (718)
T ss_pred -CCCceEEECC-------ceeEEEEeccc--cccCCcchhHHHHHHHhcC-CCC----HHHHHHHHHHCCCChHHhcCCc
Confidence 5699999875 24699999985 3445676664432211111 111 346788999999974 455554
Q ss_pred cCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEE
Q 044602 227 GGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLL 306 (674)
Q Consensus 227 g~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~ 306 (674)
..|||||||||+|||+|+.+|++|||||||+|||+.+...+.+.|++. .| |||++|||+. .+..+||++++
T Consensus 626 -----~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~~-~i~~~~drv~~ 696 (718)
T PLN03073 626 -----YTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDEH-LISGSVDELWV 696 (718)
T ss_pred -----cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCHH-HHHHhCCEEEE
Confidence 589999999999999999999999999999999999999998888765 34 9999999975 47789999999
Q ss_pred EeCCEEE-EecChhHHHHH
Q 044602 307 ISEGYPV-YYGKARESMEY 324 (674)
Q Consensus 307 L~~G~iv-~~G~~~~~~~~ 324 (674)
|++|+++ +.|+.++..++
T Consensus 697 l~~G~i~~~~g~~~~~~~~ 715 (718)
T PLN03073 697 VSEGKVTPFHGTFHDYKKT 715 (718)
T ss_pred EECCEEEEeCCCHHHHHHH
Confidence 9999998 78888765443
No 352
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-34 Score=332.55 Aligned_cols=208 Identities=25% Similarity=0.354 Sum_probs=163.6
Q ss_pred EEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 044602 70 LKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD 149 (674)
Q Consensus 70 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~ 149 (674)
++++||+++|. .+.+|+||||+|++||++||+||||||||||||+|+|.. ++
T Consensus 2 i~i~nls~~~g---------------------------~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~-~p 53 (638)
T PRK10636 2 IVFSSLQIRRG---------------------------VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEI-SA 53 (638)
T ss_pred EEEEEEEEEeC---------------------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CC
Confidence 67899998763 356999999999999999999999999999999999977 45
Q ss_pred CccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHh-----------------------hcC-CCCCCHHHH
Q 044602 150 VKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAF-----------------------LRL-PGNMNRQQK 205 (674)
Q Consensus 150 ~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~-----------------------~~~-~~~~~~~~~ 205 (674)
++|+|.++|.. .++|++|++..+. .|+.+.+.-... +.. .......+.
T Consensus 54 d~G~I~~~~~~-------~i~~~~q~~~~~~-~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (638)
T PRK10636 54 DGGSYTFPGNW-------QLAWVNQETPALP-QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTI 125 (638)
T ss_pred CCceEEecCCC-------EEEEEecCCCCCC-CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcch
Confidence 69999998742 3889988654332 366554431100 000 000001123
Q ss_pred HHHHHHHHHHcCCC-ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCc
Q 044602 206 YARVQMILKELGLE-RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGR 284 (674)
Q Consensus 206 ~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~ 284 (674)
..+++++++.+|+. +..+++++ .|||||||||+||++|+.+|++|||||||++||+.+...+.+.|+++ +.
T Consensus 126 ~~~~~~~L~~lgl~~~~~~~~~~-----~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~ 197 (638)
T PRK10636 126 RSRAASLLHGLGFSNEQLERPVS-----DFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QG 197 (638)
T ss_pred HHHHHHHHHhCCCCchhhcCchh-----hcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CC
Confidence 45788999999997 46676664 89999999999999999999999999999999999999999998875 56
Q ss_pred EEEEEecCCchHHHhhcCEEEEEeCCEEE-EecChhHHH
Q 044602 285 TVITTIHQPSSRMFHMFDKLLLISEGYPV-YYGKARESM 322 (674)
Q Consensus 285 tvi~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~ 322 (674)
|||+||||.. .+.+.||++++|++|+++ |.|+.++..
T Consensus 198 tviivsHd~~-~l~~~~d~i~~L~~G~i~~~~g~~~~~~ 235 (638)
T PRK10636 198 TLILISHDRD-FLDPIVDKIIHIEQQSLFEYTGNYSSFE 235 (638)
T ss_pred eEEEEeCCHH-HHHHhcCEEEEEeCCEEEEecCCHHHHH
Confidence 9999999975 577899999999999996 678776543
No 353
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.3e-34 Score=271.63 Aligned_cols=205 Identities=24% Similarity=0.444 Sum_probs=179.7
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh---h-ccccEEEEccCC--CCCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP---A-LKRRIGFVTQDD--VLLPQL 182 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~---~-~~~~igyv~Q~~--~l~~~l 182 (674)
..+.+.|||+++.|+.+||+|.||||||||.|+|+|.. +|++|+|++||+++.- . ..+.|-+++||+ .+-|.+
T Consensus 26 ~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi-~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl 104 (267)
T COG4167 26 VEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMI-EPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRL 104 (267)
T ss_pred hhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhccc-CCCCceEEECCccccccchHhhhhheeeeecCCccccChhh
Confidence 45899999999999999999999999999999999988 5679999999998742 2 346799999997 477888
Q ss_pred CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 044602 183 TVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE-RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPT 261 (674)
Q Consensus 183 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPT 261 (674)
.+.+-|....++ ..++..+++.+++.+.|+.+||- +.++- +++.||-||||||++||||+.+|+|++.||+.
T Consensus 105 ~iGqiLd~PL~l--~T~~~~~~R~~~i~~TL~~VGL~Pdhan~-----~~~~la~~QKQRVaLARALIL~P~iIIaDeAl 177 (267)
T COG4167 105 RIGQILDFPLRL--NTDLEPEQRRKQIFETLRMVGLLPDHANY-----YPHMLAPGQKQRVALARALILRPKIIIADEAL 177 (267)
T ss_pred hhhhHhcchhhh--cccCChHHHHHHHHHHHHHhccCcccccc-----chhhcCchhHHHHHHHHHHhcCCcEEEehhhh
Confidence 888888776544 44567788889999999999984 44554 35689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 262 SGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 262 sgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.+||...+.++.++.-+|.++ |.+-|.++.+.. .+..++|+|+||++|++|+.|++.+++
T Consensus 178 ~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG-~iKHi~D~viVM~EG~vvE~G~t~~v~ 238 (267)
T COG4167 178 ASLDMSMRSQLINLMLELQEKQGISYIYVTQHIG-MIKHISDQVLVMHEGEVVERGSTADVL 238 (267)
T ss_pred hhccHHHHHHHHHHHHHHHHHhCceEEEEechhh-HhhhhcccEEEEecCceeecCChhhhh
Confidence 999999999999999999865 999999999875 588999999999999999999999874
No 354
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2.4e-34 Score=280.87 Aligned_cols=145 Identities=26% Similarity=0.438 Sum_probs=128.0
Q ss_pred cccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHH
Q 044602 108 YKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEET 187 (674)
Q Consensus 108 ~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~ 187 (674)
++.+++|+ +++++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|.+ ++|++|+..
T Consensus 12 ~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~--------i~~~~q~~~---------- 71 (177)
T cd03222 12 VFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLI-PNGDNDEWDGIT--------PVYKPQYID---------- 71 (177)
T ss_pred CEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCC-CCCcEEEECCEE--------EEEEcccCC----------
Confidence 35688884 8999999999999999999999999999874 569999999863 788888532
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 044602 188 LVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDST 267 (674)
Q Consensus 188 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~ 267 (674)
||||||||++|||+|+.+|++++|||||++||+.
T Consensus 72 ----------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~ 105 (177)
T cd03222 72 ----------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIE 105 (177)
T ss_pred ----------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHH
Confidence 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCC-cEEEEEecCCchHHHhhcCEEEEEeCCEEEEe--cChh
Q 044602 268 SANKLIQVLQKVAKAG-RTVITTIHQPSSRMFHMFDKLLLISEGYPVYY--GKAR 319 (674)
Q Consensus 268 ~~~~i~~~L~~l~~~g-~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~--G~~~ 319 (674)
++..+.+.++++++++ +|+|++||++. .+.++||++++|+++-.++. |.|.
T Consensus 106 ~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~~~~~~~~~~~~~ 159 (177)
T cd03222 106 QRLNAARAIRRLSEEGKKTALVVEHDLA-VLDYLSDRIHVFEGEPGVYGIASQPK 159 (177)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEECCHH-HHHHhCCEEEEEcCCCccceeccCCc
Confidence 9999999999997765 99999999975 46778999999998866655 5543
No 355
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.1e-34 Score=265.83 Aligned_cols=180 Identities=33% Similarity=0.518 Sum_probs=158.4
Q ss_pred ccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC--CCccEEEECCEeCCh--hccccEEEEccCCCCCCCC
Q 044602 107 DYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD--DVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQL 182 (674)
Q Consensus 107 ~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~--~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~l 182 (674)
++...|-|+|++|.+||++-||||||||||||+..+.|.+.+ ..+|++.+|++.++. .-+|++|+.+||+.+||++
T Consensus 13 ~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphl 92 (213)
T COG4136 13 PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHL 92 (213)
T ss_pred CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeeccccccccc
Confidence 346789999999999999999999999999999999998864 468999999999873 5688999999999999999
Q ss_pred CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 044602 183 TVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTS 262 (674)
Q Consensus 183 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTs 262 (674)
+|.+||.|+. |..+..+.+++.++..|++.||....++. +.+||||||-||++-|+|+..|+.++||||+|
T Consensus 93 sVg~Nl~fAl----p~~~KG~aRr~~a~aAL~~~gL~g~f~~d-----P~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS 163 (213)
T COG4136 93 SVGQNLLFAL----PATLKGNARRNAANAALERSGLDGAFHQD-----PATLSGGQRARVALLRALLAQPKALLLDEPFS 163 (213)
T ss_pred ccccceEEec----CcccccHHHHhhHHHHHHHhccchhhhcC-----hhhcCcchHHHHHHHHHHHhCcceeeeCCchh
Confidence 9999999874 44455557777889999999999877764 45899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHH-HHHhCCcEEEEEecCCch
Q 044602 263 GLDSTSANKLIQVLQ-KVAKAGRTVITTIHQPSS 295 (674)
Q Consensus 263 gLD~~~~~~i~~~L~-~l~~~g~tvi~~~H~~~~ 295 (674)
.||..-+.++.+..- ++...|..+|.+|||..+
T Consensus 164 ~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~D 197 (213)
T COG4136 164 RLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQD 197 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEEeccccc
Confidence 999999999999774 455569999999999654
No 356
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=3.2e-34 Score=342.06 Aligned_cols=207 Identities=28% Similarity=0.482 Sum_probs=191.9
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-----hccccEEEEccCCCCCCCCCHH
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-----ALKRRIGFVTQDDVLLPQLTVE 185 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~~l~~~lTV~ 185 (674)
+.+++|+.|++||+.+++|+|||||||++|+|.|.. ++++|++.++|.++.. ..++.+||+||+|.+++.+|.+
T Consensus 580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~-~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~r 658 (885)
T KOG0059|consen 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGET-KPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGR 658 (885)
T ss_pred hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCc-cCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHH
Confidence 899999999999999999999999999999999977 5569999999998853 3678899999999999999999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 044602 186 ETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD 265 (674)
Q Consensus 186 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD 265 (674)
|++.+.++++ ++.+.+..+.++.+++.+||.+.+|+.++ .+|||+|||+++|.||+.+|++++|||||+|+|
T Consensus 659 EhL~~~arlr---G~~~~di~~~v~~ll~~~~L~~~~~~~~~-----~ySgG~kRkLs~aialig~p~vi~LDEPstGmD 730 (885)
T KOG0059|consen 659 EHLEFYARLR---GLPRSDIGSAIEKLLRLVGLGPYANKQVR-----TYSGGNKRRLSFAIALIGDPSVILLDEPSTGLD 730 (885)
T ss_pred HHHHHHHHHc---CCChhHHHHHHHHHHHHcCChhhhccchh-----hCCCcchhhHHHHHHHhcCCCEEEecCCCCCCC
Confidence 9999999887 45666777789999999999999999876 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHHHHHHh
Q 044602 266 STSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFSS 327 (674)
Q Consensus 266 ~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~ 327 (674)
|.+++.+++.+++++++|+.+|.|||.. +|...+|||+.+|.+|++...|+++++...|..
T Consensus 731 P~arr~lW~ii~~~~k~g~aiiLTSHsM-eE~EaLCtR~aImv~G~l~ciGs~q~LKsrfG~ 791 (885)
T KOG0059|consen 731 PKARRHLWDIIARLRKNGKAIILTSHSM-EEAEALCTRTAIMVIGQLRCIGSPQELKSRYGS 791 (885)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHHhhhhheeecCeeEEecChHHHHhhcCC
Confidence 9999999999999998888999999996 568999999999999999999999999877753
No 357
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.6e-33 Score=326.76 Aligned_cols=207 Identities=26% Similarity=0.349 Sum_probs=161.7
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|. .+.+|+|+||++++||+++|+||||||||||||+|+|.. +
T Consensus 3 ~l~i~~ls~~~~---------------------------~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~-~ 54 (635)
T PRK11147 3 LISIHGAWLSFS---------------------------DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEV-L 54 (635)
T ss_pred EEEEeeEEEEeC---------------------------CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCC-C
Confidence 478999998773 256999999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHH------------------------------hhc--C
Q 044602 149 DVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAA------------------------------FLR--L 196 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~------------------------------~~~--~ 196 (674)
+++|+|.++|.. .++|++|++......+|.+++..+. ... .
T Consensus 55 p~~G~I~~~~~~-------~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 127 (635)
T PRK11147 55 LDDGRIIYEQDL-------IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQL 127 (635)
T ss_pred CCCeEEEeCCCC-------EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHH
Confidence 569999998631 2677777654333346666542110 000 0
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 044602 197 PGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVL 276 (674)
Q Consensus 197 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L 276 (674)
. .....+...+++++++.+|+.. ++.+ .+|||||||||+||++|+.+|+||||||||++||+.+...+.+.|
T Consensus 128 ~-~~~~~~~~~~~~~~l~~lgl~~--~~~~-----~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L 199 (635)
T PRK11147 128 D-HHNLWQLENRINEVLAQLGLDP--DAAL-----SSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFL 199 (635)
T ss_pred H-hcCcccHHHHHHHHHHhCCCCC--CCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHH
Confidence 0 0000123457889999999963 5544 489999999999999999999999999999999999999999999
Q ss_pred HHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEE-EecChhHHH
Q 044602 277 QKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPV-YYGKARESM 322 (674)
Q Consensus 277 ~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~ 322 (674)
+++ +.|||++|||+. .+.+.||+|++|++|+++ +.|+.++..
T Consensus 200 ~~~---~~tvlivsHd~~-~l~~~~d~i~~L~~G~i~~~~g~~~~~~ 242 (635)
T PRK11147 200 KTF---QGSIIFISHDRS-FIRNMATRIVDLDRGKLVSYPGNYDQYL 242 (635)
T ss_pred HhC---CCEEEEEeCCHH-HHHHhcCeEEEEECCEEEEecCCHHHHH
Confidence 887 359999999975 477899999999999997 568876543
No 358
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1.4e-33 Score=352.27 Aligned_cols=192 Identities=28% Similarity=0.471 Sum_probs=160.1
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETL 188 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l 188 (674)
+++|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++| .++||+|++.+++. ||+|||
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~-~~~G~i~~~g---------~iayv~Q~~~l~~~-Ti~eNI 507 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE-PSEGKIKHSG---------RISFSPQTSWIMPG-TIKDNI 507 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECC---------EEEEEeCCCccCCc-cHHHHH
Confidence 579999999999999999999999999999999999874 5699999998 49999999999987 999999
Q ss_pred HHHHhhcCCCCCCHHHHHH-----HHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 044602 189 VFAAFLRLPGNMNRQQKYA-----RVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSG 263 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsg 263 (674)
.|+... ......+ ..++.++.+ ++..+|.+|+. ...||||||||++||||++.+|+|+|||||||+
T Consensus 508 ~~g~~~------~~~~~~~~~~~~~L~~~l~~l--~~g~~t~vg~~-g~~LSgGqkqRi~lARAl~~~~~illLDep~sa 578 (1490)
T TIGR01271 508 IFGLSY------DEYRYTSVIKACQLEEDIALF--PEKDKTVLGEG-GITLSGGQRARISLARAVYKDADLYLLDSPFTH 578 (1490)
T ss_pred Hhcccc------chHHHHHHHHHHhHHHHHHhc--cccccccccCc-CCCcCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 997421 1111111 122233333 44556778865 457999999999999999999999999999999
Q ss_pred CCHHHHHHHHHH-HHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHHH
Q 044602 264 LDSTSANKLIQV-LQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 264 LD~~~~~~i~~~-L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
||+.++..+.+. ++++. +|+|+|++||++.. ...||+|++|++|++++.|+++++.+
T Consensus 579 LD~~~~~~i~~~~l~~~~-~~~tvilvtH~~~~--~~~ad~ii~l~~g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 579 LDVVTEKEIFESCLCKLM-SNKTRILVTSKLEH--LKKADKILLLHEGVCYFYGTFSELQA 636 (1490)
T ss_pred CCHHHHHHHHHHHHHHHh-cCCeEEEEeCChHH--HHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999985 66665 48999999999864 45699999999999999999998853
No 359
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.7e-33 Score=267.79 Aligned_cols=142 Identities=41% Similarity=0.743 Sum_probs=129.4
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTV 184 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV 184 (674)
+.+|+++|+++++||+++|+||||||||||+++|+|.++ +.+|+|.++|.++.. ..++.++|++|
T Consensus 12 ~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~-~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q---------- 80 (157)
T cd00267 12 RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK-PTSGEILIDGKDIAKLPLEELRRRIGYVPQ---------- 80 (157)
T ss_pred eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCEEcccCCHHHHHhceEEEee----------
Confidence 358999999999999999999999999999999999875 469999999987643 34567999988
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 044602 185 EETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGL 264 (674)
Q Consensus 185 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgL 264 (674)
|||||+||++||++++.+|++++|||||+||
T Consensus 81 -------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~l 111 (157)
T cd00267 81 -------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGL 111 (157)
T ss_pred -------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 9999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCE
Q 044602 265 DSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGY 311 (674)
Q Consensus 265 D~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 311 (674)
|..++..+.+.++++.+.++|+++++|++. .+...||+++++++|+
T Consensus 112 D~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 112 DPASRERLLELLRELAEEGRTVIIVTHDPE-LAELAADRVIVLKDGK 157 (157)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCcC
Confidence 999999999999998777899999999975 4677789999999875
No 360
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=2e-33 Score=321.66 Aligned_cols=180 Identities=24% Similarity=0.389 Sum_probs=153.0
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEE-----------ECCEeCCh---hc---cccEEE
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNIT-----------YNDIPYNP---AL---KRRIGF 171 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~-----------~~g~~~~~---~~---~~~igy 171 (674)
..+|++++ .+++||+++|+||||||||||+|+|+|.++ +.+|+|. ++|+++.. .+ +.++++
T Consensus 87 ~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~-p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~ 164 (590)
T PRK13409 87 GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELI-PNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVH 164 (590)
T ss_pred ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCcc-CCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceee
Confidence 35899999 999999999999999999999999999875 4599997 99988743 11 234566
Q ss_pred EccCC----CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHH
Q 044602 172 VTQDD----VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYE 247 (674)
Q Consensus 172 v~Q~~----~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~a 247 (674)
.+|.. .++.. ||+|++... +..++++++++.+||.+..++.++ +|||||||||+||++
T Consensus 165 ~~q~~~~~p~~~~~-tv~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~~-----~LSgGe~qrv~ia~a 226 (590)
T PRK13409 165 KPQYVDLIPKVFKG-KVRELLKKV------------DERGKLDEVVERLGLENILDRDIS-----ELSGGELQRVAIAAA 226 (590)
T ss_pred cccchhhhhhhhcc-hHHHHHHhh------------hHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHH
Confidence 66653 33443 999998631 123578899999999988887765 899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCC
Q 044602 248 ILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEG 310 (674)
Q Consensus 248 L~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 310 (674)
|+.+|++|+|||||++||+.++..+.+.|+++++ |+|||+++|++. .+..++|++++|+++
T Consensus 227 l~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~-~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 227 LLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLA-VLDYLADNVHIAYGE 287 (590)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999988 999999999975 578899999999864
No 361
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-33 Score=266.12 Aligned_cols=184 Identities=27% Similarity=0.427 Sum_probs=162.3
Q ss_pred cccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh---hccccEEEEccCC
Q 044602 100 SQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP---ALKRRIGFVTQDD 176 (674)
Q Consensus 100 ~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~---~~~~~igyv~Q~~ 176 (674)
+++++..+...++.++||++.+||.+-|.||||||||||||+|+|+..| .+|+|+++|.+++. ..++.+-|+-..+
T Consensus 6 ~~L~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p-~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~ 84 (209)
T COG4133 6 ENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRP-DAGEVYWQGEPIQNVRESYHQALLYLGHQP 84 (209)
T ss_pred hhhhhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCC-CCCeEEecCCCCccchhhHHHHHHHhhccc
Confidence 4455556778899999999999999999999999999999999999854 59999999998864 3556788888888
Q ss_pred CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEE
Q 044602 177 VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLL 256 (674)
Q Consensus 177 ~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~ill 256 (674)
.+=+.|||.|||.|-....-. .....+.+.++.+||....|.+++ .||-||||||+|||-++..+++.|
T Consensus 85 giK~eLTa~ENL~F~~~~~~~------~~~~~i~~Al~~vgL~g~~dlp~~-----~LSAGQqRRvAlArL~ls~~pLWi 153 (209)
T COG4133 85 GIKTELTALENLHFWQRFHGS------GNAATIWEALAQVGLAGLEDLPVG-----QLSAGQQRRVALARLWLSPAPLWI 153 (209)
T ss_pred cccchhhHHHHHHHHHHHhCC------CchhhHHHHHHHcCcccccccchh-----hcchhHHHHHHHHHHHcCCCCcee
Confidence 889999999999998654321 123567899999999999999886 899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCch
Q 044602 257 LDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSS 295 (674)
Q Consensus 257 LDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 295 (674)
|||||++||.+....+-..+..-+.+|-.||.+||||..
T Consensus 154 LDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 154 LDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred ecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence 999999999999999999999888889999999999865
No 362
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.8e-32 Score=328.07 Aligned_cols=208 Identities=25% Similarity=0.421 Sum_probs=174.9
Q ss_pred ceeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 67 PIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 67 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
...++++|.+++...+ +..+.|+|||+++++|+++||+||-|||||+||.+|.|-+
T Consensus 516 ~~~i~i~~~sfsW~~~------------------------~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm 571 (1381)
T KOG0054|consen 516 ENAIEIKNGSFSWDSE------------------------SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEM 571 (1381)
T ss_pred CceEEEeeeeEecCCC------------------------CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 3468999999975421 1234899999999999999999999999999999999988
Q ss_pred CCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-------CC
Q 044602 147 TDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG-------LE 219 (674)
Q Consensus 147 ~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~ 219 (674)
+..+|+|.++|. ++||+|.+.++++ ||+|||.|+... ++ ++-+++++... |+
T Consensus 572 -~~~sG~v~v~gs---------iaYv~Q~pWI~ng-TvreNILFG~~~------d~----~rY~~Vi~aC~L~~Dle~Lp 630 (1381)
T KOG0054|consen 572 -PKLSGSVAVNGS---------VAYVPQQPWIQNG-TVRENILFGSPY------DE----ERYDKVIKACALKKDLEILP 630 (1381)
T ss_pred -ccccceEEEcCe---------EEEeccccHhhCC-cHHHhhhcCccc------cH----HHHHHHHHHccCHhHHhhcC
Confidence 456999999886 9999999999998 999999998532 22 23344444433 35
Q ss_pred ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHh
Q 044602 220 RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFH 299 (674)
Q Consensus 220 ~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~ 299 (674)
.+-.|.||++++ +||||||||+++|||+-+|.+|++||.|.|++|++..+.+.+..-+-.-+++|+|++|||.. ..+
T Consensus 631 ~GD~TeIGErGi-nLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~--~L~ 707 (1381)
T KOG0054|consen 631 FGDLTEIGERGI-NLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQ--FLP 707 (1381)
T ss_pred CCCcceecCCcc-CCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchh--hhh
Confidence 677889998887 59999999999999999999999999999999999999998755433335899999999864 578
Q ss_pred hcCEEEEEeCCEEEEecChhHHH
Q 044602 300 MFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 300 ~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.+|+|++|++|+|++.|+.+|+.
T Consensus 708 ~ad~Iivl~~G~I~~~Gty~el~ 730 (1381)
T KOG0054|consen 708 HADQIIVLKDGKIVESGTYEELL 730 (1381)
T ss_pred hCCEEEEecCCeEecccCHHHHH
Confidence 89999999999999999999997
No 363
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.6e-32 Score=343.13 Aligned_cols=199 Identities=23% Similarity=0.376 Sum_probs=155.9
Q ss_pred ccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHH
Q 044602 107 DYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEE 186 (674)
Q Consensus 107 ~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e 186 (674)
+.+.+|+|+|+++++||+++|+|||||||||||++|+|.++ +.+|+|.++ +.+|||+|++.+++. ||+|
T Consensus 671 ~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~-~~~G~i~~~---------~~i~yv~Q~~~l~~~-Tv~e 739 (1560)
T PTZ00243 671 EPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE-ISEGRVWAE---------RSIAYVPQQAWIMNA-TVRG 739 (1560)
T ss_pred CCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC-CCCcEEEEC---------CeEEEEeCCCccCCC-cHHH
Confidence 34679999999999999999999999999999999999874 569999863 569999999998865 9999
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 044602 187 TLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDS 266 (674)
Q Consensus 187 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~ 266 (674)
|+.|+.... .....+..+...+++.++.+ ++..++.+|+. ..+||||||||++|||||+.+|+|++|||||++||+
T Consensus 740 nI~~~~~~~-~~~~~~~~~~~~l~~~l~~l--~~g~~t~i~~~-g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~ 815 (1560)
T PTZ00243 740 NILFFDEED-AARLADAVRVSQLEADLAQL--GGGLETEIGEK-GVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDA 815 (1560)
T ss_pred HHHcCChhh-HHHHHHHHHHhhhHHHHHHh--hccchHHhcCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCH
Confidence 999853110 00000000111233444444 33445566643 457999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 267 TSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 267 ~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.++..+++.+.....+|+|+|++||++.. ...||+|++|++|++++.|+++++.
T Consensus 816 ~~~~~i~~~~~~~~~~~~TvIlvTH~~~~--~~~ad~ii~l~~G~i~~~G~~~~l~ 869 (1560)
T PTZ00243 816 HVGERVVEECFLGALAGKTRVLATHQVHV--VPRADYVVALGDGRVEFSGSSADFM 869 (1560)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEEeCCHHH--HHhCCEEEEEECCEEEEecCHHHHH
Confidence 99999887543222358999999999854 4679999999999999999999875
No 364
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.98 E-value=8.9e-32 Score=301.38 Aligned_cols=197 Identities=31% Similarity=0.448 Sum_probs=161.4
Q ss_pred cccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHH
Q 044602 108 YKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEET 187 (674)
Q Consensus 108 ~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~ 187 (674)
.+.+|+|+|+++.+|+.+||+|+||||||||||+|+|... +.+|+|...+. -++||++|++.+.+..||.+.
T Consensus 15 ~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~-~~~G~i~~~~~-------~~v~~l~Q~~~~~~~~tv~~~ 86 (530)
T COG0488 15 DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE-PDSGEVTRPKG-------LRVGYLSQEPPLDPEKTVLDY 86 (530)
T ss_pred CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCc-CCCCeEeecCC-------ceEEEeCCCCCcCCCccHHHH
Confidence 4779999999999999999999999999999999999884 56999987532 259999999999999999998
Q ss_pred HHHHHhhc-------------CCCC--------------CCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHH
Q 044602 188 LVFAAFLR-------------LPGN--------------MNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERK 240 (674)
Q Consensus 188 l~~~~~~~-------------~~~~--------------~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 240 (674)
+.-+..-. .+.. ...-+.+.++..++..+|+++. +++++ +||||||.
T Consensus 87 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~-----~LSGG~r~ 160 (530)
T COG0488 87 VIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVS-----SLSGGWRR 160 (530)
T ss_pred HHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchh-----hcCHHHHH
Confidence 87653210 0000 0000113567788888998876 77765 89999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEE-EEecChh
Q 044602 241 RTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYP-VYYGKAR 319 (674)
Q Consensus 241 Rv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i-v~~G~~~ 319 (674)
||++|++|+.+|++|+|||||+.||..+...+.+.|++. .| |+|+|||| ..-+-+.|++|+-++.|++ .|.|..+
T Consensus 161 Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHD-R~FLd~V~t~I~~ld~g~l~~y~Gny~ 236 (530)
T COG0488 161 RVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHD-RYFLDNVATHILELDRGKLTPYKGNYS 236 (530)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCC-HHHHHHHhhheEEecCCceeEecCCHH
Confidence 999999999999999999999999999999999999864 47 99999999 5568889999999999976 4667766
Q ss_pred HHH
Q 044602 320 ESM 322 (674)
Q Consensus 320 ~~~ 322 (674)
...
T Consensus 237 ~~~ 239 (530)
T COG0488 237 SYL 239 (530)
T ss_pred HHH
Confidence 543
No 365
>PLN03073 ABC transporter F family; Provisional
Probab=99.98 E-value=6.2e-32 Score=314.84 Aligned_cols=219 Identities=23% Similarity=0.229 Sum_probs=158.5
Q ss_pred CceeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcC
Q 044602 66 LPIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 66 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~ 145 (674)
....|+++|++++|. .+.+|+|+||+|++||.+||+||||||||||||+|+|+
T Consensus 174 ~~~~I~i~nls~~y~---------------------------~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~ 226 (718)
T PLN03073 174 AIKDIHMENFSISVG---------------------------GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMH 226 (718)
T ss_pred CceeEEEceEEEEeC---------------------------CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 445689999998773 24599999999999999999999999999999999986
Q ss_pred CC--CCCccEEEECCEeC-----Ch-------------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCC-------
Q 044602 146 LT--DDVKGNITYNDIPY-----NP-------------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPG------- 198 (674)
Q Consensus 146 ~~--~~~~G~I~~~g~~~-----~~-------------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~------- 198 (674)
.. .+.+|+|.+.+++. +. .+++.++|++|++.+... ++.++.........+.
T Consensus 227 ~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~~~~~~~~~~~r~ 305 (718)
T PLN03073 227 AIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANKDGVDKDAVSQRL 305 (718)
T ss_pred CCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccccchHHHHHHH
Confidence 41 23578887654431 10 012346677775433221 2222211000000000
Q ss_pred --------CCCHHHHHHHHHHHHHHcCCC-ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 044602 199 --------NMNRQQKYARVQMILKELGLE-RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSA 269 (674)
Q Consensus 199 --------~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~ 269 (674)
........+++.++++.+|+. +..++.+ .+|||||||||+||++|+.+|++|||||||++||+.+.
T Consensus 306 ~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~~~-----~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~ 380 (718)
T PLN03073 306 EEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKAT-----KTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAV 380 (718)
T ss_pred HHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHH
Confidence 000012345667788888885 3445554 48999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEE-EecChhHH
Q 044602 270 NKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPV-YYGKARES 321 (674)
Q Consensus 270 ~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~~ 321 (674)
..+.+.|+++ +.|+|+++|+.. .+...||++++|++|+++ |.|+.++.
T Consensus 381 ~~l~~~L~~~---~~tviivsHd~~-~l~~~~d~i~~l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 381 LWLETYLLKW---PKTFIVVSHARE-FLNTVVTDILHLHGQKLVTYKGDYDTF 429 (718)
T ss_pred HHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 9999999886 689999999964 577889999999999996 77877654
No 366
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.4e-31 Score=250.96 Aligned_cols=200 Identities=31% Similarity=0.490 Sum_probs=158.2
Q ss_pred cceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECC---EeCC-----h-h----ccccEEEEccCC
Q 044602 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYND---IPYN-----P-A----LKRRIGFVTQDD 176 (674)
Q Consensus 110 ~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g---~~~~-----~-~----~~~~igyv~Q~~ 176 (674)
.--+||||++.|||+++|+|.|||||||||++|++++. +++|+|.+.- ++.+ + + +|..=|+|.|+|
T Consensus 20 ~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~-p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP 98 (258)
T COG4107 20 KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLT-PDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNP 98 (258)
T ss_pred cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccC-CCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCc
Confidence 35789999999999999999999999999999999995 4699999854 3322 1 1 344679999996
Q ss_pred C--CCC----CCCHHHHHH-HHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHh
Q 044602 177 V--LLP----QLTVEETLV-FAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEIL 249 (674)
Q Consensus 177 ~--l~~----~lTV~e~l~-~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~ 249 (674)
. +-. +-.|.|-+. .+++- --..++.+.++|+++.++... + +..++.+|||++||+.|||-|+
T Consensus 99 ~DGLRm~VSAG~NiGERlma~G~RH-------YG~iR~~a~~WL~~VEI~~~R---i-DD~PrtFSGGMqQRLQiARnLV 167 (258)
T COG4107 99 RDGLRMQVSAGGNIGERLMAIGARH-------YGNIRAEAQDWLEEVEIDLDR---I-DDLPRTFSGGMQQRLQIARNLV 167 (258)
T ss_pred cccceeeeccCCccchhHHhhhhhh-------hhhHHHHHHHHHHhcccCccc---c-cCcccccchHHHHHHHHHHHhc
Confidence 3 322 223444432 12111 123445678899999876432 1 2346799999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 250 VDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 250 ~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+.|+++|+||||.|||..-+..++++++.+..+ |.+++++|||.. .+.-++||.++|++|++++.|-.+.++
T Consensus 168 t~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~-VarLla~rlmvmk~g~vve~GLTDrvL 240 (258)
T COG4107 168 TRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLADRLMVMKQGQVVESGLTDRVL 240 (258)
T ss_pred cCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhH-HHHHhhhcceeecCCCEeccccccccc
Confidence 999999999999999999999999999999875 999999999975 356679999999999999999877664
No 367
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=5.1e-31 Score=268.21 Aligned_cols=190 Identities=25% Similarity=0.362 Sum_probs=135.8
Q ss_pred cccceeeeEEEEeCCeEEEEEcCCCCcHHHHH-HHHHcCCCCCCccEEEEC-----------C-EeCCh--hcc-ccEEE
Q 044602 108 YKHILKGITGSICPGEILALMGPSGSGKTTLL-KIVGGRLTDDVKGNITYN-----------D-IPYNP--ALK-RRIGF 171 (674)
Q Consensus 108 ~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl-~~L~G~~~~~~~G~I~~~-----------g-~~~~~--~~~-~~igy 171 (674)
...+|+||||++++||+++|+||||||||||+ ..+.. +|++.+. | ....+ ..+ ...++
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA------EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAI 80 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH------HHHHHHhhcccchhhhhhcccCccccccccCCCceE
Confidence 35699999999999999999999999999996 44431 2322111 0 00000 111 13444
Q ss_pred EccCC--CCCCCCCHH---HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCccCccCHHHHHHHHHH
Q 044602 172 VTQDD--VLLPQLTVE---ETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER-CRHTRVGGGFIKGISGGERKRTSIG 245 (674)
Q Consensus 172 v~Q~~--~l~~~lTV~---e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~iA 245 (674)
..|++ .+.|..+|. |...+...+. ......++ .+.++.++|.+ ..+.. +.+||||||||++||
T Consensus 81 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~-~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~la 149 (226)
T cd03270 81 AIDQKTTSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRER-LGFLVDVGLGYLTLSRS-----APTLSGGEAQRIRLA 149 (226)
T ss_pred EecCCCCCCCCCccHHHHHHHHHHHHHHh-----hhhhHHHH-HHHHHHCCCCcccccCc-----cCcCCHHHHHHHHHH
Confidence 44443 233444554 2222221111 11112223 56899999976 35554 458999999999999
Q ss_pred HHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEE------eCCEEEEec
Q 044602 246 YEILVDP--SLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLI------SEGYPVYYG 316 (674)
Q Consensus 246 ~aL~~~P--~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G 316 (674)
|+|+.+| ++|+|||||+|||+.++..+.+.|++++++|.|+|++||++.. + +.||++++| ++|+++++|
T Consensus 150 ral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~-~-~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 150 TQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDT-I-RAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred HHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHH-H-HhCCEEEEeCCCccccCCEEEecC
Confidence 9999998 5999999999999999999999999998789999999999853 4 689999999 999999886
No 368
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.6e-31 Score=248.44 Aligned_cols=192 Identities=27% Similarity=0.424 Sum_probs=161.0
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEe--CC-----h----hc-cccEEEEccCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIP--YN-----P----AL-KRRIGFVTQDD 176 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~--~~-----~----~~-~~~igyv~Q~~ 176 (674)
-++|+|+||+++.||++++=||||||||||||.|-|.+ .+++|+|++.... ++ + +. |+.||||.|.-
T Consensus 24 LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY-~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFL 102 (235)
T COG4778 24 LPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANY-LPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFL 102 (235)
T ss_pred eeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhcc-CCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHH
Confidence 46999999999999999999999999999999999976 4569999986432 21 1 23 45799999987
Q ss_pred CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEE
Q 044602 177 VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLL 256 (674)
Q Consensus 177 ~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~ill 256 (674)
...|..+..|-+.-.+.- .+++++..+.++.+++.++++++..-... +..+||||+|||.|||.++.|-+||+
T Consensus 103 RviPRV~aLdVvaePll~---~gv~~~~a~~~a~~Ll~rLnlperLW~La----PaTFSGGEqQRVNIaRgfivd~pILL 175 (235)
T COG4778 103 RVIPRVSALDVVAEPLLA---RGVPREVARAKAADLLTRLNLPERLWSLA----PATFSGGEQQRVNIARGFIVDYPILL 175 (235)
T ss_pred HhccCcchHHHHHhHHHH---cCCCHHHHHHHHHHHHHHcCCCHHHhcCC----CcccCCchheehhhhhhhhccCceEE
Confidence 778877766666554432 25677888889999999999998766542 56899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeC
Q 044602 257 LDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISE 309 (674)
Q Consensus 257 LDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 309 (674)
|||||++||..++..++++|++-+.+|..+|=+-||.. .-...+||++-+..
T Consensus 176 LDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDee-vre~vadR~~~~~~ 227 (235)
T COG4778 176 LDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEE-VREAVADRLLDVSA 227 (235)
T ss_pred ecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHH-HHHHHhhheeeccc
Confidence 99999999999999999999998888999999999943 34568999988763
No 369
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.97 E-value=4.3e-31 Score=246.95 Aligned_cols=133 Identities=45% Similarity=0.745 Sum_probs=119.0
Q ss_pred eeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHH
Q 044602 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEET 187 (674)
Q Consensus 112 L~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~ 187 (674)
|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|+++.. ..++.++|++|++.+++.+||+||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~-~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~ 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLP-PDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSH-ESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccc-ccccccccccccccccccccccccccccccccccccccccccc
Confidence 799999999999999999999999999999999874 469999999999864 467899999999999999999998
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 044602 188 LVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTS 262 (674)
Q Consensus 188 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTs 262 (674)
...++++++++.+++.+..++.++.. ...||||||||++||+||+.+|++++|||||+
T Consensus 80 ----------------~~~~~~~~~l~~l~~~~~~~~~~~~~-~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 ----------------ESDERIEEVLKKLGLEDLLDRKIGQR-ASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp ----------------HHHHHHHHHHHHTTHGGGTGSBGTSC-GGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ----------------cccccccccccccccccccccccccc-cchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 23356889999999988888877543 36899999999999999999999999999996
No 370
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=3.3e-30 Score=266.12 Aligned_cols=194 Identities=28% Similarity=0.390 Sum_probs=153.7
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHH-----cCCC-----C----------CCccEEEECCEeCCh-----
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVG-----GRLT-----D----------DVKGNITYNDIPYNP----- 163 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~-----G~~~-----~----------~~~G~I~~~g~~~~~----- 163 (674)
..-|+|||.+|+.|++++|.|+||||||||++.+. ..+. + ...--|.+|..|+..
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 44699999999999999999999999999998552 1110 0 111246777766531
Q ss_pred ---------hccc----------------cEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC
Q 044602 164 ---------ALKR----------------RIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL 218 (674)
Q Consensus 164 ---------~~~~----------------~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 218 (674)
.+|+ .+.|..++...+..+||.|++.|..... ..+++.++++.+||
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vgL 158 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVGL 158 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcCC
Confidence 1111 2556666666677899999999875431 12466789999999
Q ss_pred Cc-cccccccCCccCccCHHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q 044602 219 ER-CRHTRVGGGFIKGISGGERKRTSIGYEILVD---PSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPS 294 (674)
Q Consensus 219 ~~-~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~---P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 294 (674)
.+ ..+..+ +.||||||||++||++|+.+ |++++|||||+|||+.....+.+.|++++++|.|+|+++|++.
T Consensus 159 ~~l~l~~~~-----~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~ 233 (261)
T cd03271 159 GYIKLGQPA-----TTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLD 233 (261)
T ss_pred chhhhcCcc-----ccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 76 355543 58999999999999999996 7999999999999999999999999999888999999999985
Q ss_pred hHHHhhcCEEEEE------eCCEEEEecCh
Q 044602 295 SRMFHMFDKLLLI------SEGYPVYYGKA 318 (674)
Q Consensus 295 ~~i~~~~D~v~~L------~~G~iv~~G~~ 318 (674)
. .+.||+++.| ++|++++.|++
T Consensus 234 ~--i~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 234 V--IKCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred H--HHhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 3 4679999999 89999999974
No 371
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.96 E-value=1.1e-28 Score=270.38 Aligned_cols=201 Identities=23% Similarity=0.460 Sum_probs=173.8
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-----hccccEEEEccC---CCCCCCC
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-----ALKRRIGFVTQD---DVLLPQL 182 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-----~~~~~igyv~Q~---~~l~~~l 182 (674)
.++|+||++++||+++|-|-=|||+|-|+++|.|.. +..+|+|.+||+++.. ..+..++||+.| .-++..+
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~-~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~ 352 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGAR-PASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDM 352 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCC-cCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCC
Confidence 589999999999999999999999999999999955 5569999999998752 467789999987 5689999
Q ss_pred CHHHHHHHHHhhcCC-C-CCCHHHHHHHHHHHHHHcCCCc-cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeC
Q 044602 183 TVEETLVFAAFLRLP-G-NMNRQQKYARVQMILKELGLER-CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDE 259 (674)
Q Consensus 183 TV~e~l~~~~~~~~~-~-~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDE 259 (674)
+|.+|+.++...+.. . -++++..++.+++..+.+++.. ..+..++ .||||.+|+|.|||.|..+|++|||||
T Consensus 353 sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~-----~LSGGNQQKVvlarwL~~~p~vLilDE 427 (500)
T COG1129 353 SIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIG-----TLSGGNQQKVVLARWLATDPKVLILDE 427 (500)
T ss_pred cHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhh-----cCCchhhhhHHHHHHHhcCCCEEEECC
Confidence 999999988332221 1 3566677778899999998853 3345554 899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecCh
Q 044602 260 PTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKA 318 (674)
Q Consensus 260 PTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 318 (674)
||.|.|.-++.+|.++|++++++|++||++|-+. +|+..+||||+||++|+++..=+.
T Consensus 428 PTRGIDVGAK~eIy~li~~lA~~G~ail~iSSEl-pEll~~~DRIlVm~~Gri~~e~~~ 485 (500)
T COG1129 428 PTRGIDVGAKAEIYRLIRELAAEGKAILMISSEL-PELLGLSDRILVMREGRIVGELDR 485 (500)
T ss_pred CCcCcccchHHHHHHHHHHHHHCCCEEEEEeCCh-HHHHhhCCEEEEEECCEEEEEecc
Confidence 9999999999999999999999999999999996 579999999999999999875443
No 372
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.96 E-value=1.5e-28 Score=275.43 Aligned_cols=204 Identities=29% Similarity=0.420 Sum_probs=167.0
Q ss_pred ceeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 67 PIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 67 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+..++++|+++.|. +.+.+++++||.+.+|+.+||+||||+|||||||+|+|..
T Consensus 319 ~~vl~~~~~~~~y~--------------------------~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~ 372 (530)
T COG0488 319 KLVLEFENVSKGYD--------------------------GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGEL 372 (530)
T ss_pred CeeEEEeccccccC--------------------------CCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhc
Confidence 45688999988663 1267999999999999999999999999999999999987
Q ss_pred CCCCccEEEECCEeCChhccccEEEEccCC-CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccc
Q 044602 147 TDDVKGNITYNDIPYNPALKRRIGFVTQDD-VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER-CRHT 224 (674)
Q Consensus 147 ~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~ 224 (674)
.+ .+|+|.+.-. -++||..|+. .+.+..|+.|++.-... . ..+..+...|..++++. ...+
T Consensus 373 ~~-~~G~v~~g~~-------v~igyf~Q~~~~l~~~~t~~d~l~~~~~-----~----~~e~~~r~~L~~f~F~~~~~~~ 435 (530)
T COG0488 373 GP-LSGTVKVGET-------VKIGYFDQHRDELDPDKTVLEELSEGFP-----D----GDEQEVRAYLGRFGFTGEDQEK 435 (530)
T ss_pred cc-CCceEEeCCc-------eEEEEEEehhhhcCccCcHHHHHHhhCc-----c----ccHHHHHHHHHHcCCChHHHhC
Confidence 44 4899987522 3599999985 55578899998875321 1 11567889999999974 3345
Q ss_pred cccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEE
Q 044602 225 RVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKL 304 (674)
Q Consensus 225 ~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v 304 (674)
+| +.||||||.|+.+|+.++.+|.+|||||||+.||..+...+.+.|++. .-|||+||||.. -+.+.|+++
T Consensus 436 ~v-----~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHDr~-Fl~~va~~i 506 (530)
T COG0488 436 PV-----GVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHDRY-FLDRVATRI 506 (530)
T ss_pred ch-----hhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHhhcceE
Confidence 55 489999999999999999999999999999999999999999999876 459999999964 588999999
Q ss_pred EEEeCCEEEE-ecChhHHHH
Q 044602 305 LLISEGYPVY-YGKARESME 323 (674)
Q Consensus 305 ~~L~~G~iv~-~G~~~~~~~ 323 (674)
+.+++ ++.. .|..++..+
T Consensus 507 ~~~~~-~~~~~~g~y~~y~~ 525 (530)
T COG0488 507 WLVED-KVEEFEGGYEDYLE 525 (530)
T ss_pred EEEcC-ceeEcCCCHHHHHH
Confidence 99998 5544 487776544
No 373
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.96 E-value=2.4e-29 Score=250.47 Aligned_cols=164 Identities=19% Similarity=0.316 Sum_probs=131.3
Q ss_pred eeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC--------CCccEEEECCEeCCh-hccccEEEEccCCCCCCCCC
Q 044602 113 KGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD--------DVKGNITYNDIPYNP-ALKRRIGFVTQDDVLLPQLT 183 (674)
Q Consensus 113 ~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~--------~~~G~I~~~g~~~~~-~~~~~igyv~Q~~~l~~~lT 183 (674)
+++++++++| +++|+||||||||||+++|+|...+ ...|++.++|++... ..+++++||+|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 7899999999 9999999999999999999987632 123578888877543 3457899999998665
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHh----hCCCEEEEeC
Q 044602 184 VEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEIL----VDPSLLLLDE 259 (674)
Q Consensus 184 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~----~~P~illLDE 259 (674)
|+. . ..++++++++. .+..++.+ ..||||||||++||++|+ .+|++++|||
T Consensus 89 ------~~~--~---------~~~~~~~~l~~---~~~~~~~~-----~~LS~G~kqrl~la~~l~~~~~~~~~illlDE 143 (197)
T cd03278 89 ------YSI--I---------SQGDVSEIIEA---PGKKVQRL-----SLLSGGEKALTALALLFAIFRVRPSPFCVLDE 143 (197)
T ss_pred ------eeE--E---------ehhhHHHHHhC---CCccccch-----hhcCHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 110 0 12356667766 34445443 589999999999999997 4669999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeC
Q 044602 260 PTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISE 309 (674)
Q Consensus 260 PTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 309 (674)
||+|||+.+...+.+.|+++++ +.|||++||++.. .+.||+++.+..
T Consensus 144 P~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~~--~~~~d~v~~~~~ 190 (197)
T cd03278 144 VDAALDDANVERFARLLKEFSK-ETQFIVITHRKGT--MEAADRLYGVTM 190 (197)
T ss_pred CcccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHHH--HhhcceEEEEEe
Confidence 9999999999999999999865 7899999999753 478999999973
No 374
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.96 E-value=8.9e-30 Score=239.13 Aligned_cols=195 Identities=26% Similarity=0.437 Sum_probs=169.1
Q ss_pred eeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHH
Q 044602 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEET 187 (674)
Q Consensus 112 L~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~ 187 (674)
|-.+|+++..||+.-++|||||||||||-.++|+. + -+|+|.++|+++.. ++.++-+|..|+..-...|.|...
T Consensus 15 L~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~-~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~Y 92 (248)
T COG4138 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-S-GSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHY 92 (248)
T ss_pred ccccccccccceEEEEECCCCccHHHHHHHHhCCC-C-CCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhh
Confidence 67899999999999999999999999999999987 3 48999999999863 567778999887655555789988
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhh-----CC--CEEEEeCC
Q 044602 188 LVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILV-----DP--SLLLLDEP 260 (674)
Q Consensus 188 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~-----~P--~illLDEP 260 (674)
+.+.- +.++....++++...++|.+...+.+ +.|||||.|||-+|-..+. || ++|+||||
T Consensus 93 L~L~q--------P~~~~a~~i~~i~~~L~l~DKL~Rs~-----~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP 159 (248)
T COG4138 93 LTLHQ--------PDKTRTELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEP 159 (248)
T ss_pred hhhcC--------chHHHHHHHHHHHhhhcccchhhhhh-----hhcCcccceeeEEeEEEEEecCCCCccceeEEecCC
Confidence 87642 33556677889999999998877654 5899999999999977654 44 79999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 261 TSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 261 TsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.++||...+..+-+.|.+++.+|.+||++.||.+. ..+.+|++.+|++|++...|..+|++
T Consensus 160 ~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNh-TLrhA~~~wLL~rG~l~~~G~~~eVl 220 (248)
T COG4138 160 MNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNH-TLRHAHRAWLLKRGKLLASGRREEVL 220 (248)
T ss_pred CcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhh-HHHHHHHHHHHhcCeEEeecchhhhc
Confidence 99999999999999999999999999999999875 67889999999999999999999885
No 375
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=3.4e-27 Score=242.41 Aligned_cols=185 Identities=16% Similarity=0.317 Sum_probs=131.2
Q ss_pred cccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC---------------CCCcc--------EEEECCEe----
Q 044602 108 YKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT---------------DDVKG--------NITYNDIP---- 160 (674)
Q Consensus 108 ~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~---------------~~~~G--------~I~~~g~~---- 160 (674)
++.++++++ |++++|+||||||||||+++|++.+. .+.+| +|.+++.+
T Consensus 14 ~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~ 88 (243)
T cd03272 14 DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFP 88 (243)
T ss_pred cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccC
Confidence 456788887 78999999999999999999984321 11234 55665532
Q ss_pred CC-h--hccccEEEEccCCCCCC-CCCHHHHHHHHHhhcCCCCCCH-HHHHHHHHHHHHHcCCCccccccccCCccCccC
Q 044602 161 YN-P--ALKRRIGFVTQDDVLLP-QLTVEETLVFAAFLRLPGNMNR-QQKYARVQMILKELGLERCRHTRVGGGFIKGIS 235 (674)
Q Consensus 161 ~~-~--~~~~~igyv~Q~~~l~~-~lTV~e~l~~~~~~~~~~~~~~-~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 235 (674)
.. . ..++.+++++|+..+++ ..|..|...+............ ...+.+ +.+.+++.+..+.. +..||
T Consensus 89 ~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~---i~~l~~l~~~~~~~-----~~~lS 160 (243)
T cd03272 89 IDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGK---INSLTNMKQDEQQE-----MQQLS 160 (243)
T ss_pred CCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCc---hHHhhhcccccccc-----ccccC
Confidence 11 1 35677999999887776 3577776655543322111000 000112 22334444444443 35899
Q ss_pred HHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEe
Q 044602 236 GGERKRTSIGYEILV----DPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLIS 308 (674)
Q Consensus 236 gGerqRv~iA~aL~~----~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 308 (674)
||||||++||++|+. +|+++++||||+|||+.++..+.+.|+++++ ++|+|+++|++ ++.+.||++++|.
T Consensus 161 ~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~--~~~~~~d~i~~l~ 234 (243)
T cd03272 161 GGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP--ELLEVADKFYGVK 234 (243)
T ss_pred HHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHhhCCEEEEEE
Confidence 999999999999974 5899999999999999999999999999865 88899888885 4679999999996
No 376
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=8e-28 Score=248.57 Aligned_cols=185 Identities=19% Similarity=0.262 Sum_probs=138.5
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCE-eC-Ch-----hccccEEEEccCC---------CCCCCC
Q 044602 119 ICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDI-PY-NP-----ALKRRIGFVTQDD---------VLLPQL 182 (674)
Q Consensus 119 i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~-~~-~~-----~~~~~igyv~Q~~---------~l~~~l 182 (674)
+.+ .+++|+||||||||||+++|++.+.+...|+++..|. ++ .. ..+..+++++|++ .+.|.+
T Consensus 23 ~~~-~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~l 101 (251)
T cd03273 23 FDP-QFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEI 101 (251)
T ss_pred CCC-CeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceE
Confidence 344 4999999999999999999999885443578888776 32 11 1234799999985 346678
Q ss_pred CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccc---------------cccCCccCccCHHHHHHHHHHHH
Q 044602 183 TVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHT---------------RVGGGFIKGISGGERKRTSIGYE 247 (674)
Q Consensus 183 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~---------------~vg~~~~~~LSgGerqRv~iA~a 247 (674)
||.+++..+...+...+ .++...+++.++++.+|+...... ..-+..+.+||||||||++||++
T Consensus 102 tV~r~I~~~~~~~~~in-~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~a 180 (251)
T cd03273 102 TVTRQIVLGGTNKYLIN-GHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLI 180 (251)
T ss_pred EEEEEEEcCCceEEEEC-CEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHH
Confidence 99998876532211000 122344788899999998611000 01122356899999999999999
Q ss_pred Hh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEe
Q 044602 248 IL----VDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLIS 308 (674)
Q Consensus 248 L~----~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 308 (674)
|+ .+|+++++||||++||+.+...+.+.|++++ +|.|+|++||++ ++.+.||+++-+.
T Consensus 181 l~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 181 LALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred HHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 98 5789999999999999999999999999985 489999999994 5688899998876
No 377
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=1.5e-28 Score=247.41 Aligned_cols=179 Identities=15% Similarity=0.209 Sum_probs=135.8
Q ss_pred ccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHH
Q 044602 107 DYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEE 186 (674)
Q Consensus 107 ~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e 186 (674)
+.+.+++++++ ++++|+||||||||||+++|.- ++|.+.....++++++++|+..+++.+|+.|
T Consensus 15 ~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~-----------~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 78 (212)
T cd03274 15 AGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLF-----------VFGFRASKMRQKKLSDLIHNSAGHPNLDSCS 78 (212)
T ss_pred CCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHH-----------HhccCHHHhhhhhHHHHhcCCCCCCCCceEE
Confidence 34668998887 8999999999999999999972 1233322212357999999988899999999
Q ss_pred HHHHHHhhcCC-----CCCCHHHHHH--HHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhh----CCCEE
Q 044602 187 TLVFAAFLRLP-----GNMNRQQKYA--RVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILV----DPSLL 255 (674)
Q Consensus 187 ~l~~~~~~~~~-----~~~~~~~~~~--~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~----~P~il 255 (674)
++.+....... .+...+.... ..+++++.++|++..++.++ .+|+|||||++||++++. +|+++
T Consensus 79 ~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~-----~lS~G~~~r~~la~al~~~~~~~p~il 153 (212)
T cd03274 79 VEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNIS-----NLSGGEKTLSSLALVFALHHYKPTPLY 153 (212)
T ss_pred EEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchh-----hcCHHHHHHHHHHHHHHhcccCCCCEE
Confidence 87665432100 0111111010 12566677888877777654 899999999999999974 47999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeC
Q 044602 256 LLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISE 309 (674)
Q Consensus 256 lLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 309 (674)
++||||+|||+.+...+.+.|+++++ +.|+|++||++ ++.+.||++++|..
T Consensus 154 ilDEPt~gLD~~~~~~l~~~l~~~~~-~~~~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 154 VMDEIDAALDFRNVSIVANYIKERTK-NAQFIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred EEcCCCcCCCHHHHHHHHHHHHHHcC-CCEEEEEECcH--HHHHhCCEEEEEEe
Confidence 99999999999999999999999864 67889999995 57899999999974
No 378
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.94 E-value=1.4e-25 Score=275.79 Aligned_cols=207 Identities=27% Similarity=0.406 Sum_probs=152.5
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHH---------HHHcCCCCCC--c-c----EEEECCEeCCh---------
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLK---------IVGGRLTDDV--K-G----NITYNDIPYNP--------- 163 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~---------~L~G~~~~~~--~-G----~I~~~g~~~~~--------- 163 (674)
...|+|+|+++++||+++|.|+||||||||++ .|.|...+.. + + -|.+|-.++..
T Consensus 608 ~~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~idQspigr~~rS~~atY 687 (1809)
T PRK00635 608 KHNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHITRDLPGRSQRSIPLTY 687 (1809)
T ss_pred cCCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEecCCCCCCCCCCCceee
Confidence 34799999999999999999999999999999 5555321100 1 1 12232222110
Q ss_pred -----hcc---------c-----cEEEEccC--------------------------------------CCCCCCCCHHH
Q 044602 164 -----ALK---------R-----RIGFVTQD--------------------------------------DVLLPQLTVEE 186 (674)
Q Consensus 164 -----~~~---------~-----~igyv~Q~--------------------------------------~~l~~~lTV~e 186 (674)
.+| + ...|.++. ...+...||.|
T Consensus 688 ~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~~e~L~~~~~~~tI~e 767 (1809)
T PRK00635 688 IKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFLPQVLEVRYKGKNIAD 767 (1809)
T ss_pred hhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccCHHHHhhccCCCCHHH
Confidence 111 0 11122221 12566789999
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCccCccCHHHHHHHHHHHHHh---hCCCEEEEeCCCC
Q 044602 187 TLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC-RHTRVGGGFIKGISGGERKRTSIGYEIL---VDPSLLLLDEPTS 262 (674)
Q Consensus 187 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~iA~aL~---~~P~illLDEPTs 262 (674)
+|.++..-........++..+++ ++++.+||.+. .++.+ .+||||||||++||++|+ .+|+++||||||+
T Consensus 768 vL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~-----~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTs 841 (1809)
T PRK00635 768 ILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPL-----SSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTT 841 (1809)
T ss_pred HHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCC
Confidence 99987653211112234445566 58899999875 56654 489999999999999998 6999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEe------CCEEEEecChhHHHH
Q 044602 263 GLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLIS------EGYPVYYGKARESME 323 (674)
Q Consensus 263 gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~------~G~iv~~G~~~~~~~ 323 (674)
|||+.+...+++.|++++++|.|||+++|++.. + +.+|++++|. +|++++.|+++++..
T Consensus 842 GLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~-i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 842 GLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHV-V-KVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-HhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 999999999999999998889999999999863 4 8999999996 789999999998753
No 379
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.94 E-value=3.6e-26 Score=230.55 Aligned_cols=179 Identities=18% Similarity=0.184 Sum_probs=126.4
Q ss_pred eeeEEEEe-CCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECC--EeCC-hhccccEEEEccCCCCCCCCCHHHHH
Q 044602 113 KGITGSIC-PGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYND--IPYN-PALKRRIGFVTQDDVLLPQLTVEETL 188 (674)
Q Consensus 113 ~~vs~~i~-~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g--~~~~-~~~~~~igyv~Q~~~l~~~lTV~e~l 188 (674)
++++|... +|++++|+||||||||||+++|++.+.....+....+. ..+. ...+..+++++|++.... ++....
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~--~~~r~~ 95 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKY--RVERSR 95 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECCeEE--EEEEec
Confidence 56666543 58999999999999999999999755433344444321 0111 134557999999863211 111111
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhh----------CCCEEEEe
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILV----------DPSLLLLD 258 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~----------~P~illLD 258 (674)
..+.++..+.+ .++..++.+..++. +..||||||||++||++|+. +|++++||
T Consensus 96 ----------gl~~~~~~~~~--~l~~g~l~~~l~~~-----~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllD 158 (213)
T cd03279 96 ----------GLDYDQFTRIV--LLPQGEFDRFLARP-----VSTLSGGETFLASLSLALALSEVLQNRGGARLEALFID 158 (213)
T ss_pred ----------CCCHHHHHHhh--hhhhcchHHHhcCC-----ccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEe
Confidence 12222221111 23333344444444 35899999999999999985 57899999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCE
Q 044602 259 EPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGY 311 (674)
Q Consensus 259 EPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 311 (674)
|||++||+.+...+.+.|++++++|+|+|++||++. .+...+|+++++++|.
T Consensus 159 Ep~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~-~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 159 EGFGTLDPEALEAVATALELIRTENRMVGVISHVEE-LKERIPQRLEVIKTPG 210 (213)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchH-HHHhhCcEEEEEecCC
Confidence 999999999999999999999877999999999975 4678899999999874
No 380
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.94 E-value=3.2e-25 Score=238.56 Aligned_cols=206 Identities=22% Similarity=0.386 Sum_probs=177.3
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeC----Ch--hccccEEEEccCC---CCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPY----NP--ALKRRIGFVTQDD---VLL 179 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~----~~--~~~~~igyv~Q~~---~l~ 179 (674)
...+++|||++++||+++|.|-.|-|-+.|+.+|+|+.++. +|+|.++|+++ +. ..+..+||||.|. .+.
T Consensus 271 ~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~-~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv 349 (501)
T COG3845 271 VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPA-SGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLV 349 (501)
T ss_pred CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccC-CceEEECCEeccccCCHHHHHhcCCccCChhhccCccc
Confidence 35799999999999999999999999999999999987444 69999999996 22 2345799999985 578
Q ss_pred CCCCHHHHHHHHHhhcC----CCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCccCccCHHHHHHHHHHHHHhhCCCE
Q 044602 180 PQLTVEETLVFAAFLRL----PGNMNRQQKYARVQMILKELGLER-CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSL 254 (674)
Q Consensus 180 ~~lTV~e~l~~~~~~~~----~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~i 254 (674)
+.+|+.||+.+....+. ...+...+..+.+++++++++... ..+.+ .+.||||++||+-+||+|.++|++
T Consensus 350 ~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~-----a~~LSGGNqQK~IlaREl~~~p~l 424 (501)
T COG3845 350 LDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAP-----ARSLSGGNQQKLILARELARRPDL 424 (501)
T ss_pred cCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcc-----hhhcCCcceehhhhhhhhccCCCE
Confidence 89999999998764321 113566778888999999998863 23333 358999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHH
Q 044602 255 LLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 255 llLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
|+..+||.|||..+...|.+.|.+++++|+.|++++-++. +++.+||||.+|.+|+++...++++.
T Consensus 425 LI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLD-Eil~lsDrIaVi~~Gri~~~~~~~~~ 490 (501)
T COG3845 425 LIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLD-EILELSDRIAVIYEGRIVGIVPPEEA 490 (501)
T ss_pred EEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHH-HHHHhhheeeeeeCCceecccccccC
Confidence 9999999999999999999999999999999999999974 79999999999999999998887763
No 381
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.93 E-value=2.3e-26 Score=230.31 Aligned_cols=165 Identities=17% Similarity=0.292 Sum_probs=125.4
Q ss_pred eeEEEEeCCeEEEEEcCCCCcHHHHHHHHH----cCCCCCCccEEEECCEeCC-hhccccEEEEccCC-----CCCCCCC
Q 044602 114 GITGSICPGEILALMGPSGSGKTTLLKIVG----GRLTDDVKGNITYNDIPYN-PALKRRIGFVTQDD-----VLLPQLT 183 (674)
Q Consensus 114 ~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~----G~~~~~~~G~I~~~g~~~~-~~~~~~igyv~Q~~-----~l~~~lT 183 (674)
..++++.+| +++|+||||||||||+++|. |... +..|.+..+...+. ...+..+++++|++ .....+|
T Consensus 15 ~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~-~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~ 92 (204)
T cd03240 15 RSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELP-PNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLA 92 (204)
T ss_pred ceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCC-cccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhh
Confidence 344567778 99999999999999999995 7663 33565552222222 23456799999987 4455568
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHH------HHHHHHHhhCCCEEEE
Q 044602 184 VEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKR------TSIGYEILVDPSLLLL 257 (674)
Q Consensus 184 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR------v~iA~aL~~~P~illL 257 (674)
|.||+.+. .. ..+++.+ +. .++.||+||||| ++||++++.+|+++++
T Consensus 93 ~~~~~~~~---------~~----~~~~~~~---------~~-----~~~~LS~G~~~~~~la~rlala~al~~~p~illl 145 (204)
T cd03240 93 ILENVIFC---------HQ----GESNWPL---------LD-----MRGRCSGGEKVLASLIIRLALAETFGSNCGILAL 145 (204)
T ss_pred Hhhceeee---------ch----HHHHHHH---------hc-----CccccCccHHHHHHHHHHHHHHHHhccCCCEEEE
Confidence 88888653 11 1222333 22 245899999996 7899999999999999
Q ss_pred eCCCCCCCHHHHH-HHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeC
Q 044602 258 DEPTSGLDSTSAN-KLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISE 309 (674)
Q Consensus 258 DEPTsgLD~~~~~-~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~ 309 (674)
||||++||+.++. .+.+.|++++++ |+|+|++||++. ....||+++.|.+
T Consensus 146 DEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~--~~~~~d~i~~l~~ 197 (204)
T cd03240 146 DEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE--LVDAADHIYRVEK 197 (204)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHH--HHhhCCEEEEEee
Confidence 9999999999999 999999999876 899999999965 3567999999963
No 382
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.93 E-value=1.4e-25 Score=250.29 Aligned_cols=197 Identities=26% Similarity=0.397 Sum_probs=157.6
Q ss_pred ceeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 67 PIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 67 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
...++++|++..-+ +.+..|++.|+.+++||-+.|.||||||||||+|+|+|+-
T Consensus 390 ~~~i~~~nl~l~~p--------------------------~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLW 443 (604)
T COG4178 390 DHGITLENLSLRTP--------------------------DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLW 443 (604)
T ss_pred cceeEEeeeeEECC--------------------------CCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 46789999987543 2247899999999999999999999999999999999977
Q ss_pred CCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 044602 147 TDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRV 226 (674)
Q Consensus 147 ~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 226 (674)
|--+|+|..- -...+-|+||.|.+..+ |.+|-|.|..... . -.++.+.++|.++||++..++.=
T Consensus 444 -P~g~G~I~~P-------~~~~~lflpQ~PY~p~G-tLre~l~YP~~~~---~----~~d~~l~~vL~~vgL~~L~~rl~ 507 (604)
T COG4178 444 -PWGSGRISMP-------ADSALLFLPQRPYLPQG-TLREALCYPNAAP---D----FSDAELVAVLHKVGLGDLAERLD 507 (604)
T ss_pred -ccCCCceecC-------CCCceEEecCCCCCCCc-cHHHHHhCCCCCC---C----CChHHHHHHHHHcCcHHHHHHHh
Confidence 4447877542 12458999999999888 9999998863211 1 23456788999999987665421
Q ss_pred cC-CccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEE
Q 044602 227 GG-GFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLL 305 (674)
Q Consensus 227 g~-~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 305 (674)
+. +--+.||+||||||++||.|+++|++++|||.||+||+.++..+.+.+++-. .+.|||-+.|++. +..+.++.+
T Consensus 508 ~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~t--l~~~h~~~l 584 (604)
T COG4178 508 EEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRPT--LWNFHSRQL 584 (604)
T ss_pred ccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC-CCCEEEEeccchh--hHHHHhhhe
Confidence 11 1234699999999999999999999999999999999999999999998743 3899999999975 466667765
Q ss_pred EEe
Q 044602 306 LIS 308 (674)
Q Consensus 306 ~L~ 308 (674)
-+.
T Consensus 585 ~l~ 587 (604)
T COG4178 585 ELL 587 (604)
T ss_pred eec
Confidence 554
No 383
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.93 E-value=2.9e-26 Score=238.80 Aligned_cols=205 Identities=24% Similarity=0.308 Sum_probs=163.9
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
-.++++|+.|.|... .-=+..||++|+.||++-|+|.||||||||+++|.|+..
T Consensus 321 ~~lelrnvrfay~~~--------------------------~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~ 374 (546)
T COG4615 321 KTLELRNVRFAYQDN--------------------------AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQ 374 (546)
T ss_pred cceeeeeeeeccCcc--------------------------cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccC
Confidence 368999999988631 123678999999999999999999999999999999874
Q ss_pred CCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 044602 148 DDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRH 223 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 223 (674)
|.+|+|++||+|++. +.|+-++-|+-|..+|+.+--.| . ....+.++..|+.+.|.+...
T Consensus 375 -PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e------------~---~as~q~i~~~LqrLel~~kts 438 (546)
T COG4615 375 -PQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPE------------G---KASPQLIEKWLQRLELAHKTS 438 (546)
T ss_pred -CCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCc------------c---CCChHHHHHHHHHHHHhhhhc
Confidence 569999999999974 57777888888888887631111 1 112345677777777665432
Q ss_pred ccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHhCCcEEEEEecCCchHHHhhcC
Q 044602 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQ-KVAKAGRTVITTIHQPSSRMFHMFD 302 (674)
Q Consensus 224 ~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~-~l~~~g~tvi~~~H~~~~~i~~~~D 302 (674)
-.=|+-..-.||-|||||+++-.||+-+-+|+++||=-+.-||.-++.+.+.+- .++++|+||+.+|||.. -+..+|
T Consensus 439 l~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~--YF~~AD 516 (546)
T COG4615 439 LNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDH--YFIHAD 516 (546)
T ss_pred ccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCch--hhhhHH
Confidence 221211234699999999999999999999999999999999999999987664 45567999999999954 589999
Q ss_pred EEEEEeCCEEEEec
Q 044602 303 KLLLISEGYPVYYG 316 (674)
Q Consensus 303 ~v~~L~~G~iv~~G 316 (674)
|++.+++|++++..
T Consensus 517 rll~~~~G~~~e~t 530 (546)
T COG4615 517 RLLEMRNGQLSELT 530 (546)
T ss_pred HHHHHhcCceeecc
Confidence 99999999999765
No 384
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.93 E-value=2e-24 Score=255.92 Aligned_cols=125 Identities=30% Similarity=0.430 Sum_probs=107.0
Q ss_pred CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCccCccCHHHHHHHHHHHHHhhCC---CEEEE
Q 044602 182 LTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER-CRHTRVGGGFIKGISGGERKRTSIGYEILVDP---SLLLL 257 (674)
Q Consensus 182 lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P---~illL 257 (674)
+||.|++.|...+. + ..+..+.++.+||.+ ..+..+ .+||||||||+.||++|+.+| ++++|
T Consensus 792 ltv~E~l~~f~~~~------~---i~~~l~~L~~vgL~~l~l~~~~-----~tLSgGEkQRl~LAraL~~~p~~~~llIL 857 (943)
T PRK00349 792 MTVEEALEFFEAIP------K---IARKLQTLVDVGLGYIKLGQPA-----TTLSGGEAQRVKLAKELSKRSTGKTLYIL 857 (943)
T ss_pred CcHHHHHHHHHhch------h---hhHHHHHHHHCCCCcccccCCc-----ccCCHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 78999988865331 1 123467899999975 355544 489999999999999999999 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEE------eCCEEEEecChhHHH
Q 044602 258 DEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLI------SEGYPVYYGKARESM 322 (674)
Q Consensus 258 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 322 (674)
||||+|||+.+...+++.|+++.++|.|||+++|++.. .+.+|+|+.| ++|++++.|+++++.
T Consensus 858 DEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~--i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~ 926 (943)
T PRK00349 858 DEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDV--IKTADWIIDLGPEGGDGGGEIVATGTPEEVA 926 (943)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH--HHhCCEEEEecCCcCCCCCEEEEeCCHHHHH
Confidence 99999999999999999999998889999999999853 4679999999 799999999999874
No 385
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.91 E-value=9.6e-24 Score=249.68 Aligned_cols=125 Identities=30% Similarity=0.415 Sum_probs=103.8
Q ss_pred CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCccCccCHHHHHHHHHHHHHhh---CCCEEE
Q 044602 181 QLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER-CRHTRVGGGFIKGISGGERKRTSIGYEILV---DPSLLL 256 (674)
Q Consensus 181 ~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~iA~aL~~---~P~ill 256 (674)
.+||.|.+.|...+. ...+..++++.+||.. ..++.+ ++|||||+||+.||++|+. +|++++
T Consensus 789 ~~tv~e~~~f~~~~~---------~i~~~l~~L~~~gL~~l~l~~~~-----~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---------SISRKLQTLCDVGLGYIKLGQPA-----TTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc---------chhHHHHHHHHcCCCchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 367777777764321 1123457889999975 345543 5899999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEE------eCCEEEEecChhHH
Q 044602 257 LDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLI------SEGYPVYYGKARES 321 (674)
Q Consensus 257 LDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~ 321 (674)
|||||+|||+.+...+++.|+++.++|.|||+++|++.. .+.||++++| ++|++++.|+++++
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~--i~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDV--IKTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH--HHhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 999999999999999999999998889999999999853 4679999999 79999999999875
No 386
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.91 E-value=1.2e-24 Score=209.86 Aligned_cols=214 Identities=20% Similarity=0.327 Sum_probs=167.4
Q ss_pred ccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC---CccEEEECCEeCC---h-hc----cccEEEEccC
Q 044602 107 DYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD---VKGNITYNDIPYN---P-AL----KRRIGFVTQD 175 (674)
Q Consensus 107 ~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~---~~G~I~~~g~~~~---~-~~----~~~igyv~Q~ 175 (674)
+...+++++|+++..||+-+++|.||||||-..|+|+|..+.. +.-+.++++.++- + +. -+.|++++|+
T Consensus 18 G~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQe 97 (330)
T COG4170 18 GWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQE 97 (330)
T ss_pred CceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcC
Confidence 3356899999999999999999999999999999999976531 2344556666542 2 22 2368899999
Q ss_pred CC--CCCCCCHHHHHHHHHhhcCCCCC---CHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhh
Q 044602 176 DV--LLPQLTVEETLVFAAFLRLPGNM---NRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILV 250 (674)
Q Consensus 176 ~~--l~~~lTV~e~l~~~~~~~~~~~~---~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~ 250 (674)
+. +-|.-+|...|.-........+. .-..+++++-++|.++|+.+..|- -..++.+|.-||-|+|.||.|++.
T Consensus 98 P~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDI--M~SYP~ElTeGE~QKVMIA~A~An 175 (330)
T COG4170 98 PQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDI--MRSYPYELTEGECQKVMIAIALAN 175 (330)
T ss_pred chhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHH--HHhCcchhccCcceeeeeehhhcc
Confidence 74 55555555444322211111110 012345678899999999887663 335788999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHHH
Q 044602 251 DPSLLLLDEPTSGLDSTSANKLIQVLQKVAK-AGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 251 ~P~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
+|++|+.||||+++|+.++.+|.++|.++.+ +|+||+.++||... +.+.||++-||.-|+-++.++.+++++
T Consensus 176 qPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~-is~W~d~i~VlYCGQ~~ESa~~e~l~~ 248 (330)
T COG4170 176 QPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQM-ISQWADKINVLYCGQTVESAPSEELVT 248 (330)
T ss_pred CCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHH-HHHHhhheEEEEecccccccchhHHhc
Confidence 9999999999999999999999999999976 48999999999764 889999999999999999999998864
No 387
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.91 E-value=2e-24 Score=233.39 Aligned_cols=204 Identities=23% Similarity=0.326 Sum_probs=158.5
Q ss_pred ceeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 67 PIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 67 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
|..+.++||+|.|+. +..++++++|-++.++.+|+|||||+|||||||++.|.+
T Consensus 387 ~pvi~~~nv~F~y~~--------------------------~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl 440 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSD--------------------------NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDL 440 (614)
T ss_pred CCeEEEeccccCCCC--------------------------cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcc
Confidence 344788888886642 126899999999999999999999999999999999988
Q ss_pred CCCCccEEEECCEeCChhccccEEEEccC--CCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccc
Q 044602 147 TDDVKGNITYNDIPYNPALKRRIGFVTQD--DVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHT 224 (674)
Q Consensus 147 ~~~~~G~I~~~g~~~~~~~~~~igyv~Q~--~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 224 (674)
.| ..|.|.-.-+ .++++-.|+ +.+--+.++-|++.=.. .+....+.+..+|.++||....+.
T Consensus 441 ~p-~~G~vs~~~H-------~~~~~y~Qh~~e~ldl~~s~le~~~~~~--------~~~~~~e~~r~ilgrfgLtgd~q~ 504 (614)
T KOG0927|consen 441 QP-TIGMVSRHSH-------NKLPRYNQHLAEQLDLDKSSLEFMMPKF--------PDEKELEEMRSILGRFGLTGDAQV 504 (614)
T ss_pred cc-cccccccccc-------ccchhhhhhhHhhcCcchhHHHHHHHhc--------cccchHHHHHHHHHHhCCCccccc
Confidence 54 5888854332 234555554 34444567878765321 112345678899999999854443
Q ss_pred cccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEE
Q 044602 225 RVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKL 304 (674)
Q Consensus 225 ~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v 304 (674)
. ..++||+|||+||.+|+.++..|.||+|||||+|||..+...+.+.|.+. .-+||.++||.. .+.+.+++|
T Consensus 505 ~----p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfr-lI~qVaeEi 576 (614)
T KOG0927|consen 505 V----PMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFR-LISQVAEEI 576 (614)
T ss_pred c----chhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhh-HHHHHHHHh
Confidence 2 24589999999999999999999999999999999999999999999876 358999999976 478899999
Q ss_pred EEEeCCEE-EEecChhH
Q 044602 305 LLISEGYP-VYYGKARE 320 (674)
Q Consensus 305 ~~L~~G~i-v~~G~~~~ 320 (674)
.+..+|.+ .+.|+...
T Consensus 577 ~~c~~~~~~~~~G~i~~ 593 (614)
T KOG0927|consen 577 WVCENGTVTKWDGDIEI 593 (614)
T ss_pred HhhccCceeecCccHHH
Confidence 99988765 46665543
No 388
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.90 E-value=2.2e-23 Score=207.80 Aligned_cols=167 Identities=18% Similarity=0.208 Sum_probs=122.5
Q ss_pred eeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEE--CCEeCCh-----hccccEEEEccCCCCCCCCCH
Q 044602 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITY--NDIPYNP-----ALKRRIGFVTQDDVLLPQLTV 184 (674)
Q Consensus 112 L~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~--~g~~~~~-----~~~~~igyv~Q~~~l~~~lTV 184 (674)
++++++++.+| +.+|+||||||||||+.+|...+. |+... .|....+ .....+.+++|+..++++
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~----~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~--- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLG----GKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN--- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhc----CCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCC---
Confidence 47788888887 889999999999999999974332 22111 1221111 123458888887665541
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHH----hhCCCEEEEeCC
Q 044602 185 EETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEI----LVDPSLLLLDEP 260 (674)
Q Consensus 185 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL----~~~P~illLDEP 260 (674)
... ...+++++++++. .+..++++ ++||+|||||++||+++ +.+|++++||||
T Consensus 84 --------------~~~-~~~~~~~~~~l~~---~~~~~~~~-----~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP 140 (198)
T cd03276 84 --------------PLC-VLSQDMARSFLTS---NKAAVRDV-----KTLSGGERSFSTVCLLLSLWEVMESPFRCLDEF 140 (198)
T ss_pred --------------cCC-HHHHHHHHHHhcc---ccccCCcc-----cccChhHHHHHHHHHHHHHhcccCCCEEEecCc
Confidence 011 1123567777776 44555554 58999999999999999 589999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC---CcEEEEEecCCchHHHhhcCEEEEEeCCE
Q 044602 261 TSGLDSTSANKLIQVLQKVAKA---GRTVITTIHQPSSRMFHMFDKLLLISEGY 311 (674)
Q Consensus 261 TsgLD~~~~~~i~~~L~~l~~~---g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 311 (674)
|+|||..+...+.+.|+++.++ +.|||+++|++.. +.+ +|+|.+|..++
T Consensus 141 ~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~-i~~-~d~v~~~~~~~ 192 (198)
T cd03276 141 DVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISG-LAS-SDDVKVFRMKD 192 (198)
T ss_pred ccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccc-ccc-ccceeEEEecC
Confidence 9999999999999999998653 3689999999864 544 59999998754
No 389
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.90 E-value=1.3e-23 Score=227.17 Aligned_cols=202 Identities=25% Similarity=0.343 Sum_probs=135.0
Q ss_pred cccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC-CccEEEECCEeCChhccccEEEEccCCCCCCCCCHHH
Q 044602 108 YKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD-VKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEE 186 (674)
Q Consensus 108 ~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~-~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e 186 (674)
...+++|+++++.+|+.++|+|+|||||||+|++|+|+..|. .+=.++.-.+++.+...+-+-+|.+. .-..+.
T Consensus 87 g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~~-----~~~e~~ 161 (614)
T KOG0927|consen 87 GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVME-----TDHERK 161 (614)
T ss_pred CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhhh-----hHHHHH
Confidence 467999999999999999999999999999999999987542 12222222222221111111111100 001111
Q ss_pred HHHHHHh-hcC----------------CCCCCHHHHHHHHHHHHHHcCC-CccccccccCCccCccCHHHHHHHHHHHHH
Q 044602 187 TLVFAAF-LRL----------------PGNMNRQQKYARVQMILKELGL-ERCRHTRVGGGFIKGISGGERKRTSIGYEI 248 (674)
Q Consensus 187 ~l~~~~~-~~~----------------~~~~~~~~~~~~v~~~l~~lgL-~~~~~~~vg~~~~~~LSgGerqRv~iA~aL 248 (674)
.+.+-+. +.. ...+..+..+.++-++|..+|. ++..++.+ .++|||+|.|+++||+|
T Consensus 162 rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~-----~~~SgGwrmR~aLAr~L 236 (614)
T KOG0927|consen 162 RLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKV-----KDLSGGWRMRAALARAL 236 (614)
T ss_pred HHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHh-----hccCchHHHHHHHHHHH
Confidence 1111000 000 0012223334455566666664 34455544 58999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCE-EEEecChhHHH
Q 044602 249 LVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGY-PVYYGKARESM 322 (674)
Q Consensus 249 ~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~-iv~~G~~~~~~ 322 (674)
..+|++|+|||||++||..+..-+-+.|.+..+ + ++++++|.- +-+-..|.+|+-|++++ +.|.|+.++..
T Consensus 237 f~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~-~-~lVi~sh~Q-Dfln~vCT~Ii~l~~kkl~~y~Gnydqy~ 308 (614)
T KOG0927|consen 237 FQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR-I-ILVIVSHSQ-DFLNGVCTNIIHLDNKKLIYYEGNYDQYV 308 (614)
T ss_pred hcCCCEEEecCCccCCCHHHHHHHHHHHHhccC-c-eEEEEecch-hhhhhHhhhhheecccceeeecCCHHHHh
Confidence 999999999999999999999999999877532 2 899999985 45788999999999999 56778776653
No 390
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.90 E-value=7.5e-23 Score=222.67 Aligned_cols=205 Identities=21% Similarity=0.333 Sum_probs=158.6
Q ss_pred ceeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 67 PIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 67 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
...++|++|+..-|. ++..+.+|+|++|+.|+-+.|.||||||||+|+|+|+|+-
T Consensus 431 Dn~i~~e~v~l~tPt-------------------------~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLW 485 (659)
T KOG0060|consen 431 DNAIEFEEVSLSTPT-------------------------NGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLW 485 (659)
T ss_pred cceEEeeeeeecCCC-------------------------CCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhccc
Confidence 356899999885432 1355889999999999999999999999999999999976
Q ss_pred CCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccc-
Q 044602 147 TDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTR- 225 (674)
Q Consensus 147 ~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~- 225 (674)
+..+|++.--...- -+.+-||||.|.+--+ |.||.+.|...-- ....+...++++.+.|+.++|.|..++.
T Consensus 486 -p~~~G~l~k~~~~~----~~~lfflPQrPYmt~G-TLRdQvIYP~~~~--~~~~~~~~d~~i~r~Le~v~L~hl~~r~g 557 (659)
T KOG0060|consen 486 -PSTGGKLTKPTDGG----PKDLFFLPQRPYMTLG-TLRDQVIYPLKAE--DMDSKSASDEDILRILENVQLGHLLEREG 557 (659)
T ss_pred -ccCCCeEEecccCC----CCceEEecCCCCcccc-chhheeeccCccc--cccccCCCHHHHHHHHHHhhhhhHHHHhC
Confidence 55689886533221 1558999999998877 9999999873211 1112223345677778877776654432
Q ss_pred -----ccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhh
Q 044602 226 -----VGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHM 300 (674)
Q Consensus 226 -----vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~ 300 (674)
+--+-...||+||+||++.||-+.++|++-+|||.||++|...+..+.+.++++ |.|.|-+.|+.+ +.+.
T Consensus 558 gld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~---giT~iSVgHRkS--L~kf 632 (659)
T KOG0060|consen 558 GLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM---GITFISVGHRKS--LWKF 632 (659)
T ss_pred CCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc---CCeEEEeccHHH--HHhh
Confidence 111112469999999999999999999999999999999999999999888764 999999999976 4676
Q ss_pred cCEEEEEeC
Q 044602 301 FDKLLLISE 309 (674)
Q Consensus 301 ~D~v~~L~~ 309 (674)
=|.++-|+.
T Consensus 633 Hd~~L~~~g 641 (659)
T KOG0060|consen 633 HDYVLRMDG 641 (659)
T ss_pred hhEEEEecC
Confidence 788888874
No 391
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.89 E-value=2.6e-23 Score=214.44 Aligned_cols=179 Identities=16% Similarity=0.245 Sum_probs=119.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEe--CCh---------hccccEEEEccCCCC-CCCCCHHHH
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIP--YNP---------ALKRRIGFVTQDDVL-LPQLTVEET 187 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~--~~~---------~~~~~igyv~Q~~~l-~~~lTV~e~ 187 (674)
.++ +++|+|||||||||||++|++.+.+. .|++..++.. +.. ...-.+.|..|++.. .-..++.+.
T Consensus 21 ~~~-~~~i~G~NGsGKStll~ai~~~l~~~-~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~ 98 (247)
T cd03275 21 FDR-FTCIIGPNGSGKSNLMDAISFVLGEK-SSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGG 98 (247)
T ss_pred CCC-eEEEECCCCCCHHHHHHHHHHHhCCC-cccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECC
Confidence 344 99999999999999999999877433 5666554321 000 111134444444321 111122221
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccc---------cccCC--------ccCccCHHHHHHHHHHHHHhh
Q 044602 188 LVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHT---------RVGGG--------FIKGISGGERKRTSIGYEILV 250 (674)
Q Consensus 188 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~---------~vg~~--------~~~~LSgGerqRv~iA~aL~~ 250 (674)
.. ..+... +....+.++++++.+|+...... .+.+. .+..||||||||++||++++.
T Consensus 99 ~~---~~~ing---k~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~ 172 (247)
T cd03275 99 SS---SYRING---KVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAI 172 (247)
T ss_pred ce---EEEECC---EEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHH
Confidence 10 001111 11123456788888988532111 11111 236899999999999999987
Q ss_pred C----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEe
Q 044602 251 D----PSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLIS 308 (674)
Q Consensus 251 ~----P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 308 (674)
+ |+++++||||+|||+.++..+.+.|++++++|.++|++||++ ++.+.||++++|.
T Consensus 173 ~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~--~~~~~~d~i~~~~ 232 (247)
T cd03275 173 HSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKE--EFFSKADALVGVY 232 (247)
T ss_pred hccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCH--HHHhhCCeEEEEE
Confidence 5 899999999999999999999999999987799999999995 3578899999997
No 392
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.88 E-value=2.8e-22 Score=212.63 Aligned_cols=174 Identities=26% Similarity=0.350 Sum_probs=138.9
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHH
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVF 190 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~ 190 (674)
-|+-=.+++..||+++++||||-||||+.++|+|.++| ++|+ .. .-+++|=||--.--...||++-|.-
T Consensus 356 ~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikP-deg~----~~------~~~vSyKPQyI~~~~~gtV~~~l~~ 424 (591)
T COG1245 356 KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKP-DEGS----EE------DLKVSYKPQYISPDYDGTVEDLLRS 424 (591)
T ss_pred EEEecCCeeecceEEEEECCCCcchHHHHHHHhccccC-CCCC----Cc------cceEeecceeecCCCCCcHHHHHHH
Confidence 35555677888999999999999999999999998855 4776 11 2348888886332234599998765
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 044602 191 AAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSAN 270 (674)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~ 270 (674)
....+... .---.++++-|+|++..++.|. +|||||.|||+||.+|.+++++++||||++-||++.+.
T Consensus 425 ~~~~~~~~-------s~~~~ei~~pl~l~~i~e~~v~-----~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~ 492 (591)
T COG1245 425 AIRSAFGS-------SYFKTEIVKPLNLEDLLERPVD-----ELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRI 492 (591)
T ss_pred hhhhhccc-------chhHHhhcCccchHHHHhcccc-----cCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHH
Confidence 43322111 1123578888999998888775 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEe
Q 044602 271 KLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLIS 308 (674)
Q Consensus 271 ~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~ 308 (674)
.+.+.|++..+. ++|.+++-||..- +-.++||+++.+
T Consensus 493 ~vakvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~ 530 (591)
T COG1245 493 IVAKVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe
Confidence 999999999874 7999999999753 566789988875
No 393
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=2.7e-21 Score=203.19 Aligned_cols=178 Identities=30% Similarity=0.408 Sum_probs=140.2
Q ss_pred ccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCC--CCCCCCCH
Q 044602 107 DYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDD--VLLPQLTV 184 (674)
Q Consensus 107 ~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~--~l~~~lTV 184 (674)
+.++.+++++|-|.-...+||+||||.||||||++|.|.+.| ..|+.+-| .|-+||+..|+. .|-..-|.
T Consensus 598 gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P-~~GE~RKn-------hrL~iG~FdQh~~E~L~~Eetp 669 (807)
T KOG0066|consen 598 GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDP-NDGELRKN-------HRLRIGWFDQHANEALNGEETP 669 (807)
T ss_pred CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCC-Ccchhhcc-------ceeeeechhhhhHHhhccccCH
Confidence 347799999999999999999999999999999999998854 47776544 234699998873 45555577
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 044602 185 EETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGL 264 (674)
Q Consensus 185 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgL 264 (674)
-|.|.-.. +++. +.+...|-.+||...++|. .++.||||||-||++|.--+..|+||||||||++|
T Consensus 670 ~EyLqr~F------Nlpy----q~ARK~LG~fGL~sHAHTi----kikdLSGGQKaRValaeLal~~PDvlILDEPTNNL 735 (807)
T KOG0066|consen 670 VEYLQRKF------NLPY----QEARKQLGTFGLASHAHTI----KIKDLSGGQKARVALAELALGGPDVLILDEPTNNL 735 (807)
T ss_pred HHHHHHhc------CCCh----HHHHHHhhhhhhhhccceE----eeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCc
Confidence 77665332 2222 3455678889999888884 35689999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCC
Q 044602 265 DSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEG 310 (674)
Q Consensus 265 D~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 310 (674)
|.++...+.+.|++. +..||+++||..- +.+.-..++|+++-
T Consensus 736 DIESIDALaEAIney---~GgVi~VsHDeRL-i~eT~C~LwVvE~Q 777 (807)
T KOG0066|consen 736 DIESIDALAEAINEY---NGGVIMVSHDERL-IVETDCNLWVVENQ 777 (807)
T ss_pred chhhHHHHHHHHHhc---cCcEEEEecccce-eeecCceEEEEccC
Confidence 999999999999876 3478999999653 44444456666643
No 394
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.85 E-value=1.1e-20 Score=182.19 Aligned_cols=210 Identities=22% Similarity=0.313 Sum_probs=159.7
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..+++.++.|+|+.. .+++-|+|++++.|....++|.||||||||||+|+|..-
T Consensus 12 ~aievsgl~f~y~~~--------------------------dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhm 65 (291)
T KOG2355|consen 12 FAIEVSGLQFKYKVS--------------------------DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHM 65 (291)
T ss_pred ceEEEeccEEecccC--------------------------CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccc
Confidence 358999999988642 368999999999999999999999999999999999643
Q ss_pred CCCccEEEECCEeCCh---------------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 044602 148 DDVKGNITYNDIPYNP---------------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMI 212 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~---------------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~ 212 (674)
- -.|.|.++|.+.-. ++.+.+++-- +..+-.++++.+ +.|+.. .... ++-+++
T Consensus 66 v-~~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~ag-evplq~D~sae~-mifgV~-----g~dp----~Rre~L 133 (291)
T KOG2355|consen 66 V-GGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAG-EVPLQGDISAEH-MIFGVG-----GDDP----ERREKL 133 (291)
T ss_pred c-cCCeEEEcCcCccccccccccCceeEecccccccccccc-cccccccccHHH-HHhhcc-----CCCh----hHhhhh
Confidence 2 25899999976411 2444444433 222233456655 444421 1111 344566
Q ss_pred HHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEec
Q 044602 213 LKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK-AGRTVITTIH 291 (674)
Q Consensus 213 l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H 291 (674)
++.++++-.. ..+.+|-|||+||.|+..|++.=++|+|||-|--||..++..+++.+++-.+ +|.||+..||
T Consensus 134 I~iLDIdl~W-------RmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATH 206 (291)
T KOG2355|consen 134 IDILDIDLRW-------RMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATH 206 (291)
T ss_pred hhheeccceE-------EEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEee
Confidence 6666654211 1246999999999999999999999999999999999999999999999876 4999999999
Q ss_pred CCchHHHhhcCEEEEEeCCEEEEecChhHHHH
Q 044602 292 QPSSRMFHMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 292 ~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
-..- +.....+++.+++|+++..-+.+++.+
T Consensus 207 IFDG-Le~Wpthl~yi~~Gkl~~~l~~~~i~e 237 (291)
T KOG2355|consen 207 IFDG-LETWPTHLVYIKSGKLVDNLKYQKIKE 237 (291)
T ss_pred eccc-hhhcchhEEEecCCeeeeccccchhhh
Confidence 9754 778899999999999998666665544
No 395
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.85 E-value=4.7e-21 Score=191.43 Aligned_cols=147 Identities=21% Similarity=0.211 Sum_probs=110.3
Q ss_pred ceeeeEEEEeCCe-EEEEEcCCCCcHHHHHHHHH--------cCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCC
Q 044602 111 ILKGITGSICPGE-ILALMGPSGSGKTTLLKIVG--------GRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQ 181 (674)
Q Consensus 111 iL~~vs~~i~~Ge-~~ailG~sGsGKSTLl~~L~--------G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~ 181 (674)
-.-++|+++.+|+ +++|.||||||||||||.|+ |..-+. .. ...++|..|....
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~-~~-------------~~~~~~~~~~~~~--- 78 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPA-AE-------------GSSLPVFENIFAD--- 78 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccc-cc-------------cccCcCccEEEEe---
Confidence 3568999999995 89999999999999999998 322111 00 0123333332111
Q ss_pred CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 044602 182 LTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPT 261 (674)
Q Consensus 182 lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPT 261 (674)
++..+..+.. ...+|+||||++.|+++ +.+|+++++||||
T Consensus 79 ----------------------------------lg~~~~l~~~-----~s~fs~g~~~~~~i~~~-~~~p~llllDEp~ 118 (200)
T cd03280 79 ----------------------------------IGDEQSIEQS-----LSTFSSHMKNIARILQH-ADPDSLVLLDELG 118 (200)
T ss_pred ----------------------------------cCchhhhhcC-----cchHHHHHHHHHHHHHh-CCCCcEEEEcCCC
Confidence 1111111211 23799999999999977 5899999999999
Q ss_pred CCCCHHHHHHHH-HHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEec
Q 044602 262 SGLDSTSANKLI-QVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYG 316 (674)
Q Consensus 262 sgLD~~~~~~i~-~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 316 (674)
+|||+.....+. ..++++.+.|.|+|++||+. ++.+.+|+++.|++|++++.+
T Consensus 119 ~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~--~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 119 SGTDPVEGAALAIAILEELLERGALVIATTHYG--ELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHH--HHHHHHhcCCCeEEEEEEEec
Confidence 999999999996 46888877799999999983 578999999999999998874
No 396
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.85 E-value=6.3e-21 Score=192.26 Aligned_cols=80 Identities=23% Similarity=0.327 Sum_probs=68.2
Q ss_pred cCccCHHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C-cEEEEEecCCchHHHhhcC--
Q 044602 231 IKGISGGERKRTSIGYEI----LVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-G-RTVITTIHQPSSRMFHMFD-- 302 (674)
Q Consensus 231 ~~~LSgGerqRv~iA~aL----~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g-~tvi~~~H~~~~~i~~~~D-- 302 (674)
+.+||||||||+.++++| +.+|+++++||||+|||+.++..+.+.|++++++ | .|+|++||+... ..+.+|
T Consensus 124 ~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~-~~~~~~~~ 202 (213)
T cd03277 124 PHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLP-GLNYHEKM 202 (213)
T ss_pred hhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhcc-CCcccCce
Confidence 458999999998877554 5899999999999999999999999999999876 5 589999999754 456666
Q ss_pred EEEEEeCCE
Q 044602 303 KLLLISEGY 311 (674)
Q Consensus 303 ~v~~L~~G~ 311 (674)
+|++|++|+
T Consensus 203 ~v~~l~~g~ 211 (213)
T cd03277 203 TVLCVYNGP 211 (213)
T ss_pred EEEEEecCc
Confidence 788888886
No 397
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=1.6e-21 Score=209.98 Aligned_cols=192 Identities=22% Similarity=0.285 Sum_probs=133.5
Q ss_pred cccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccC-CCCCCCCCH
Q 044602 106 KDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQD-DVLLPQLTV 184 (674)
Q Consensus 106 ~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~-~~l~~~lTV 184 (674)
.+.+.+|.+-++++..|..++|+|+||+|||||||+|+. |.|. +-++.++.+. -+++-. +.+-.+ |.
T Consensus 90 ~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~-------~~v~--~f~veqE~~g--~~t~~~~~~l~~D-~~ 157 (582)
T KOG0062|consen 90 YGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN-------GQVS--GFHVEQEVRG--DDTEALQSVLESD-TE 157 (582)
T ss_pred ecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh-------cCcC--ccCchhheec--cchHHHhhhhhcc-HH
Confidence 356789999999999999999999999999999999995 2221 2222222221 122211 122233 33
Q ss_pred HHHHHHHHhhcCCCCCCHH-HHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 044602 185 EETLVFAAFLRLPGNMNRQ-QKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSG 263 (674)
Q Consensus 185 ~e~l~~~~~~~~~~~~~~~-~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsg 263 (674)
++.+...- + .+... +..+...++|..+|..+..... ..++||||=|-|+++||||..+|+||+|||||+.
T Consensus 158 ~~dfl~~e--~---~l~~~~~l~ei~~~~L~glGFt~emq~~----pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNh 228 (582)
T KOG0062|consen 158 RLDFLAEE--K---ELLAGLTLEEIYDKILAGLGFTPEMQLQ----PTKSLSGGWRMRLALARALFAKPDLLLLDEPTNH 228 (582)
T ss_pred HHHHHHhh--h---hhhccchHHHHHHHHHHhCCCCHHHHhc----cccccCcchhhHHHHHHHHhcCCCEEeecCCccc
Confidence 33322210 0 01111 2233344588889987544322 2458999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEE-EEecChhHHH
Q 044602 264 LDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYP-VYYGKARESM 322 (674)
Q Consensus 264 LD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i-v~~G~~~~~~ 322 (674)
||..+...+.+.|+.+ +.|+|+++|| +.-+-..|..|+-+++-++ .|.|+.++..
T Consensus 229 LDv~av~WLe~yL~t~---~~T~liVSHD-r~FLn~V~tdIIH~~~~kL~~YkGN~~~Fv 284 (582)
T KOG0062|consen 229 LDVVAVAWLENYLQTW---KITSLIVSHD-RNFLNTVCTDIIHLENLKLDYYKGNYSQFV 284 (582)
T ss_pred chhHHHHHHHHHHhhC---CceEEEEecc-HHHHHHHHHHHHHHhhhhhhhhcCcHHHHH
Confidence 9999999999999875 4799999999 4456677888888877665 4667766554
No 398
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=2.1e-20 Score=201.32 Aligned_cols=204 Identities=25% Similarity=0.358 Sum_probs=157.4
Q ss_pred CceeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcC
Q 044602 66 LPIFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 66 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.|..+++.+|+|.|+.. .+ +++.+++..++.-+..+++|+||+||||++|++.|-
T Consensus 359 ~~p~l~i~~V~f~y~p~------------------------~y-~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~ 413 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTPS------------------------EY-QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGD 413 (582)
T ss_pred CCCeeEEEeeeccCCCc------------------------ch-hhhhccCCccchhhhhheeccCchhHHHHHHHHhcc
Confidence 34568888888876421 12 689999999999999999999999999999999997
Q ss_pred CCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccc
Q 044602 146 LTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC-RHT 224 (674)
Q Consensus 146 ~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~ 224 (674)
+.+ .+|.+.+.+ |.+++|-.|...=+-.+.|.+ +.+....+ | +.. ++..+.-+..+||+.. +..
T Consensus 414 l~~-~rgi~~~~~-------r~ri~~f~Qhhvd~l~~~v~~-vd~~~~~~-p-G~~----~ee~r~hl~~~Gl~g~la~~ 478 (582)
T KOG0062|consen 414 LTP-TRGIVGRHP-------RLRIKYFAQHHVDFLDKNVNA-VDFMEKSF-P-GKT----EEEIRRHLGSFGLSGELALQ 478 (582)
T ss_pred CCc-ccceeeecc-------cceecchhHhhhhHHHHHhHH-HHHHHHhC-C-CCC----HHHHHHHHHhcCCCchhhhc
Confidence 744 478776653 567999999754333344443 33333333 2 222 3456677899999743 222
Q ss_pred cccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEE
Q 044602 225 RVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKL 304 (674)
Q Consensus 225 ~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v 304 (674)
. +.+||||||-||++|.....+|.+|+|||||+.||..+-..+.+.|+.. +-.||++|||.+ .+...|+.+
T Consensus 479 s-----i~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~~-fi~~~c~E~ 549 (582)
T KOG0062|consen 479 S-----IASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDEE-FISSLCKEL 549 (582)
T ss_pred c-----ccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcHH-HHhhcCcee
Confidence 2 4589999999999999999999999999999999999999999999876 457999999954 588899999
Q ss_pred EEEeCCEEEE-ecCh
Q 044602 305 LLISEGYPVY-YGKA 318 (674)
Q Consensus 305 ~~L~~G~iv~-~G~~ 318 (674)
++.++|++.- .|..
T Consensus 550 Wvve~g~vt~ieg~~ 564 (582)
T KOG0062|consen 550 WVVEDGKVTPIEGGI 564 (582)
T ss_pred EEEcCCcEEeeeccH
Confidence 9999999863 4444
No 399
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.83 E-value=8.5e-21 Score=201.45 Aligned_cols=171 Identities=26% Similarity=0.431 Sum_probs=131.3
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEE-----------EECCEeCChhcc----------ccEEEEccCCC
Q 044602 119 ICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNI-----------TYNDIPYNPALK----------RRIGFVTQDDV 177 (674)
Q Consensus 119 i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I-----------~~~g~~~~~~~~----------~~igyv~Q~~~ 177 (674)
.++|++++|+||||-||||-+|+|+|.+.|. =|+- .+-|.++..-++ .++-||.--|.
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PN-LG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk 175 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPN-LGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPK 175 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccC-CCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHH
Confidence 5799999999999999999999999988653 2322 111222111111 12233333344
Q ss_pred CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEE
Q 044602 178 LLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLL 257 (674)
Q Consensus 178 l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illL 257 (674)
.+.+ ||.|-|.-. ...-..+++++.++|.+..|+.|. +|||||-||++||.+++++.+++++
T Consensus 176 ~~KG-~v~elLk~~------------de~g~~devve~l~L~nvl~r~v~-----~LSGGELQr~aIaa~l~rdADvY~F 237 (591)
T COG1245 176 VVKG-KVGELLKKV------------DERGKFDEVVERLGLENVLDRDVS-----ELSGGELQRVAIAAALLRDADVYFF 237 (591)
T ss_pred Hhcc-hHHHHHHhh------------hhcCcHHHHHHHhcchhhhhhhhh-----hcCchHHHHHHHHHHHhccCCEEEE
Confidence 4555 777765421 122357899999999999998775 8999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeC
Q 044602 258 DEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISE 309 (674)
Q Consensus 258 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 309 (674)
|||||-||...+....+.++++++.+++||++-||+. .+-.++|-|.++..
T Consensus 238 DEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLa-vLD~lsD~vhI~YG 288 (591)
T COG1245 238 DEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLA-VLDYLSDFVHILYG 288 (591)
T ss_pred cCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHH-HHHHhhheeEEEec
Confidence 9999999999999999999999988999999999975 35667899888873
No 400
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.82 E-value=1.4e-19 Score=177.48 Aligned_cols=74 Identities=24% Similarity=0.378 Sum_probs=68.6
Q ss_pred cCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeC
Q 044602 234 ISGGERKRTSIGYEIL----VDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISE 309 (674)
Q Consensus 234 LSgGerqRv~iA~aL~----~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 309 (674)
||||||||++||++++ .+|+++++||||++||+..+..+.+.|++++++|+|+|+++|++. ....+|+++.+.+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~--~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKE--MFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH--HHhhCCeEEEEEE
Confidence 9999999999999996 699999999999999999999999999999877899999999974 4678999999975
No 401
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.82 E-value=1.6e-21 Score=193.58 Aligned_cols=203 Identities=28% Similarity=0.497 Sum_probs=180.7
Q ss_pred HHHHHHHHHHHHHh-hcchhH-HHHHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 044602 416 DQFHIISRRTFRER-WRDYFD-KLRLVQALGVAVVLGLLWWKSQSTTEAQLRDQVGLIFYICIFWTSSSIFGAVYVFPFE 493 (674)
Q Consensus 416 ~Q~~~L~~R~~~~~-r~~~~~-~~r~~~~i~~all~G~lf~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~~i~~f~~e 493 (674)
+|++.+++|+++.. |++... ...++..+++++++|.+|.++++ +.++. ++.|++++.+...++....+....+..|
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGN-SQDGF-NRPGLIFGSIIFSFFSSISGSSISFERE 78 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhcccc-ccccc-ccceeeehhhHHhhhhhcccchhhhhhh
Confidence 59999999999985 555455 67999999999999999999884 33344 7788888877776655555555778899
Q ss_pred hhHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 044602 494 KIYLVKERKADMYRLSVYYVCSTLCDMVAHVFYPTIFMVIVYFMAGFKRTVPCFFLTLFAILLVAITSQGAGELFGAAVL 573 (674)
Q Consensus 494 r~v~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~m~gl~~~~~~F~~f~~~~~l~~~~~~s~~~~i~a~~~ 573 (674)
|..+.||+.++.|++.+|++|+.+.+++..++.++++.++.|++.|++.+ +|+.+++++++..+++.++|.+++++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~~ 156 (210)
T PF01061_consen 79 RGTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALFP 156 (210)
T ss_pred ccccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccchh
Confidence 99999999999999999999999999999999999999999999999887 7788888889999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhhcccC--CChhhhHhhHhhcHHHHHHHHhhc
Q 044602 574 SIKRAGMIASLILMLFLLTGGYYVQ--HIPKFMQWLKYLSFLYYGFRLLLK 622 (674)
Q Consensus 574 ~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Ya~eal~~ 622 (674)
+...+..+.+++..++++++|.+.| .+|+|++|+.|+||++|++|++..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~ 207 (210)
T PF01061_consen 157 SFRDASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRA 207 (210)
T ss_pred hhhhhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998 899999999999999999999864
No 402
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.80 E-value=9.5e-20 Score=181.76 Aligned_cols=147 Identities=18% Similarity=0.195 Sum_probs=108.8
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETL 188 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l 188 (674)
+.|++|+++.. |++++|+||||||||||+|.|+|... +...|.++.. -.+++|.+.+|+.+|+.||+
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~------l~~~G~~v~a-----~~~~~q~~~l~~~~~~~d~l 80 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI------LAQAGAPVCA-----SSFELPPVKIFTSIRVSDDL 80 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH------HHHcCCEEec-----CccCcccceEEEeccchhcc
Confidence 46888887775 79999999999999999999998542 1224444422 13677878899999999999
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTS 268 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~ 268 (674)
.++.. ....+ .+++.++++.+++ .+|+++++||||+|+|+..
T Consensus 81 ~~~~s------~~~~e-~~~~~~iL~~~~~-------------------------------~~p~llllDEp~~glD~~~ 122 (199)
T cd03283 81 RDGIS------YFYAE-LRRLKEIVEKAKK-------------------------------GEPVLFLLDEIFKGTNSRE 122 (199)
T ss_pred ccccC------hHHHH-HHHHHHHHHhccC-------------------------------CCCeEEEEecccCCCCHHH
Confidence 87531 11222 3567777777642 7999999999999999999
Q ss_pred HHHHHH-HHHHHHhCCcEEEEEecCCchHHHhh--cCEEEEE
Q 044602 269 ANKLIQ-VLQKVAKAGRTVITTIHQPSSRMFHM--FDKLLLI 307 (674)
Q Consensus 269 ~~~i~~-~L~~l~~~g~tvi~~~H~~~~~i~~~--~D~v~~L 307 (674)
...+.. .++++.+.|.|+|++||++.. +... .++|-.+
T Consensus 123 ~~~l~~~ll~~l~~~~~tiiivTH~~~~-~~~~~~~~~v~~~ 163 (199)
T cd03283 123 RQAASAAVLKFLKNKNTIGIISTHDLEL-ADLLDLDSAVRNY 163 (199)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCcHHH-HHhhhcCCCeEEE
Confidence 987754 688887779999999999753 3333 3445444
No 403
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.80 E-value=1.2e-19 Score=195.24 Aligned_cols=172 Identities=25% Similarity=0.378 Sum_probs=128.8
Q ss_pred cccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHH
Q 044602 108 YKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEET 187 (674)
Q Consensus 108 ~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~ 187 (674)
...+...+||++++|-.+.|.||||||||+|.++|+|+- |...|...+ + -+.++-|+||.|.+--+ |.+|.
T Consensus 494 ~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLW-Pvy~g~L~~------P-~~~~mFYIPQRPYms~g-tlRDQ 564 (728)
T KOG0064|consen 494 GDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLW-PVYNGLLSI------P-RPNNIFYIPQRPYMSGG-TLRDQ 564 (728)
T ss_pred cceeecceeEEecCCceEEEECCCCccHHHHHHHHhccC-cccCCeeec------C-CCcceEeccCCCccCcC-cccce
Confidence 355889999999999999999999999999999999976 543444322 1 13459999999987754 88888
Q ss_pred HHHHHhhc--CCCCCCHHHHHHHHHHHHHHcCCCccccccccCCc----cCccCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 044602 188 LVFAAFLR--LPGNMNRQQKYARVQMILKELGLERCRHTRVGGGF----IKGISGGERKRTSIGYEILVDPSLLLLDEPT 261 (674)
Q Consensus 188 l~~~~~~~--~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~----~~~LSgGerqRv~iA~aL~~~P~illLDEPT 261 (674)
+.|..... ...+.. ++..+.+|+.+.|++...+-.|=+- ...||||||||+++||.+-++|+.-+|||.|
T Consensus 565 IIYPdS~e~~~~kg~~----d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcT 640 (728)
T KOG0064|consen 565 IIYPDSSEQMKRKGYT----DQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECT 640 (728)
T ss_pred eecCCcHHHHHhcCCC----HHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhh
Confidence 77642110 001122 2345566676666655544332111 1359999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCch
Q 044602 262 SGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSS 295 (674)
Q Consensus 262 sgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 295 (674)
|+..+..+..+.+..+. .|.+.|-++|+|+-
T Consensus 641 sAvsidvE~~i~~~ak~---~gi~llsithrpsl 671 (728)
T KOG0064|consen 641 SAVSIDVEGKIFQAAKD---AGISLLSITHRPSL 671 (728)
T ss_pred cccccchHHHHHHHHHh---cCceEEEeecCccH
Confidence 99999998888887764 49999999999974
No 404
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.79 E-value=5e-19 Score=185.99 Aligned_cols=185 Identities=25% Similarity=0.384 Sum_probs=140.7
Q ss_pred ccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC-------CCCccEEEECCEeCChhccccEEEEccC-CCC
Q 044602 107 DYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT-------DDVKGNITYNDIPYNPALKRRIGFVTQD-DVL 178 (674)
Q Consensus 107 ~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~-------~~~~G~I~~~g~~~~~~~~~~igyv~Q~-~~l 178 (674)
....+|+|+|++++||++++|+|+|||||||+|++|.|... .|++|.|.+--.. ..+.+|-+ +.-
T Consensus 394 ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt-------~~a~iPge~Ep~ 466 (593)
T COG2401 394 IERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT-------VSALIPGEYEPE 466 (593)
T ss_pred eeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc-------hhhccCcccccc
Confidence 34579999999999999999999999999999999999642 2567777653211 23344543 223
Q ss_pred CCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEe
Q 044602 179 LPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLD 258 (674)
Q Consensus 179 ~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLD 258 (674)
|..-|+.|++.- .+.+ ...+.++|++.||.+..-.+ +..++||-|||.|+.||.++...|.+++.|
T Consensus 467 f~~~tilehl~s-----~tGD------~~~AveILnraGlsDAvlyR---r~f~ELStGQKeR~KLAkllaerpn~~~iD 532 (593)
T COG2401 467 FGEVTILEHLRS-----KTGD------LNAAVEILNRAGLSDAVLYR---RKFSELSTGQKERAKLAKLLAERPNVLLID 532 (593)
T ss_pred cCchhHHHHHhh-----ccCc------hhHHHHHHHhhccchhhhhh---ccHhhcCcchHHHHHHHHHHhcCCCcEEhh
Confidence 445577776641 1111 12356889999997643221 234689999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhh-cCEEEEEeCCEEE
Q 044602 259 EPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHM-FDKLLLISEGYPV 313 (674)
Q Consensus 259 EPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~-~D~v~~L~~G~iv 313 (674)
|--+.||+.++..+.+.|.+++++ |.|.+++||+|. .+-.+ -|+++++.=|++.
T Consensus 533 EF~AhLD~~TA~rVArkiselaRe~giTlivvThrpE-v~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 533 EFAAHLDELTAVRVARKISELAREAGITLIVVTHRPE-VGNALRPDTLILVGYGKVP 588 (593)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHhccCCceeEEeeccccc
Confidence 999999999999999999999974 999999999985 34455 6999888766543
No 405
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.79 E-value=2.8e-18 Score=211.89 Aligned_cols=199 Identities=24% Similarity=0.326 Sum_probs=144.2
Q ss_pred cceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHH-c----CCC---CCCccEEEECCEeCCh--------------hccc
Q 044602 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVG-G----RLT---DDVKGNITYNDIPYNP--------------ALKR 167 (674)
Q Consensus 110 ~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~-G----~~~---~~~~G~I~~~g~~~~~--------------~~~~ 167 (674)
.=|+||+.+|+-|.+++|.|.||||||||++-.. - .+. ...+--|.+|-.|+.. .+|+
T Consensus 1504 nNLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~ 1583 (1809)
T PRK00635 1504 HTIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPSVFSEIIFLDSHPQISSQRSDISTYFDIAPSLRN 1583 (1809)
T ss_pred ccCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCCCCCCchhhhhhhHHHHHH
Confidence 3589999999999999999999999999997433 1 110 1123346666555420 0110
Q ss_pred -------------------------------cEEEEccCCCCCC--------------------------------CCCH
Q 044602 168 -------------------------------RIGFVTQDDVLLP--------------------------------QLTV 184 (674)
Q Consensus 168 -------------------------------~igyv~Q~~~l~~--------------------------------~lTV 184 (674)
.-|++.=+..++| .|||
T Consensus 1584 lFA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mtv 1663 (1809)
T PRK00635 1584 FYASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTPI 1663 (1809)
T ss_pred HHhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCCH
Confidence 0122211111111 3577
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhC---CCEEEEeCCC
Q 044602 185 EETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVD---PSLLLLDEPT 261 (674)
Q Consensus 185 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~---P~illLDEPT 261 (674)
.|.+.|... ..+..+.-+.|+++||.... .| +...+|||||.||+-+|.+|..+ +.+++|||||
T Consensus 1664 ~ea~~~F~~---------~~~i~~~L~~L~~vGLgYl~---LG-q~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt 1730 (1809)
T PRK00635 1664 EEVAETFPF---------LKKIQKPLQALIDNGLGYLP---LG-QNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIA 1730 (1809)
T ss_pred HHHHHHhhc---------cHHHHHHHHHHHHcCCCeee---CC-CcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCC
Confidence 777666521 12234556788889986432 33 23457999999999999999876 7899999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEe------CCEEEEecChhHHHH
Q 044602 262 SGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLIS------EGYPVYYGKARESME 323 (674)
Q Consensus 262 sgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~------~G~iv~~G~~~~~~~ 323 (674)
+||++.....+++.|++|.+.|.|||++.|++. +.+.||.|+-|- .|+||+.|+|+++.+
T Consensus 1731 ~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~~--~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1731 TSLDNQQKSALLVQLRTLVSLGHSVIYIDHDPA--LLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH--HHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 999999999999999999999999999999974 677799999994 479999999999864
No 406
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.79 E-value=2e-19 Score=182.50 Aligned_cols=152 Identities=22% Similarity=0.279 Sum_probs=116.2
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEE-EEccCCCCCCCCCHHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIG-FVTQDDVLLPQLTVEET 187 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~ig-yv~Q~~~l~~~lTV~e~ 187 (674)
+.+.+|++++..+|++++|.||||+|||||++.++ .. .+..++| |||.+...++
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~-~~-----------------~~la~~g~~vpa~~~~~~------- 71 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIG-VI-----------------VLMAQIGCFVPCDSADIP------- 71 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHH-HH-----------------HHHHHhCCCcCcccEEEe-------
Confidence 56899999999999999999999999999999998 21 1122334 5555432211
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHH--hhCCCEEEEeCC---CC
Q 044602 188 LVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEI--LVDPSLLLLDEP---TS 262 (674)
Q Consensus 188 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL--~~~P~illLDEP---Ts 262 (674)
.++++++.+|+.+.. .+++|.|++|++.+++++ +.+|+++||||| |+
T Consensus 72 --------------------~~~~il~~~~l~d~~--------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~ 123 (222)
T cd03285 72 --------------------IVDCILARVGASDSQ--------LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTS 123 (222)
T ss_pred --------------------ccceeEeeeccccch--------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCC
Confidence 123345556665432 247999999999999999 899999999999 99
Q ss_pred CCCHHHHHHHHHHHHHHHh-CCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecC
Q 044602 263 GLDSTSANKLIQVLQKVAK-AGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGK 317 (674)
Q Consensus 263 gLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 317 (674)
+||+.+.... .++.+.+ .|.++|++||+ .++.++||++..+++|++...++
T Consensus 124 ~lD~~~~~~~--il~~l~~~~~~~vlisTH~--~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 124 TYDGFGLAWA--IAEYIATQIKCFCLFATHF--HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred hHHHHHHHHH--HHHHHHhcCCCeEEEEech--HHHHHHhhcCCCeEEEEEEEEEe
Confidence 9999888543 3344444 48999999996 46789999999999999987764
No 407
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=1.1e-18 Score=182.90 Aligned_cols=76 Identities=22% Similarity=0.381 Sum_probs=68.7
Q ss_pred ccCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEe
Q 044602 233 GISGGERKRTSIGYEILV----DPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLIS 308 (674)
Q Consensus 233 ~LSgGerqRv~iA~aL~~----~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 308 (674)
.||||||||+++|++++. +|+++++||||++||+.+...+.+.|+++.+ +.|+|+++|++. +...+|+++.|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l~ 246 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLVE 246 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEEE
Confidence 599999999999997654 9999999999999999999999999999865 799999999975 468999999998
Q ss_pred CCE
Q 044602 309 EGY 311 (674)
Q Consensus 309 ~G~ 311 (674)
+|.
T Consensus 247 ~~~ 249 (276)
T cd03241 247 KEV 249 (276)
T ss_pred Eec
Confidence 763
No 408
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.77 E-value=9.8e-18 Score=189.00 Aligned_cols=128 Identities=32% Similarity=0.469 Sum_probs=102.5
Q ss_pred CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCC---CEEEE
Q 044602 181 QLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDP---SLLLL 257 (674)
Q Consensus 181 ~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P---~illL 257 (674)
.|||.|...|.... ....+.-+.|..+||.-. ++| +...+|||||.|||-+|.+|.... .+++|
T Consensus 783 ~MTveEA~~FF~~~---------p~I~rkLqtL~dVGLgYi---~LG-QpatTLSGGEaQRvKLA~EL~k~~tg~TlYiL 849 (935)
T COG0178 783 DMTVEEALEFFEAI---------PKIARKLQTLVDVGLGYI---KLG-QPATTLSGGEAQRVKLAKELSKRSTGKTLYIL 849 (935)
T ss_pred hccHHHHHHHHhcc---------hHHHHHHHHHHHcCcceE---ecC-CccccccchHHHHHHHHHHHhhccCCCeEEEe
Confidence 35666666654311 112344466777887532 233 334589999999999999999887 89999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEe------CCEEEEecChhHHHH
Q 044602 258 DEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLIS------EGYPVYYGKARESME 323 (674)
Q Consensus 258 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~------~G~iv~~G~~~~~~~ 323 (674)
||||+||-.....++++.|.+|.++|-|||+|-|++. +.+.||.|+=|- .|+||+.|+|+|+.+
T Consensus 850 DEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLd--VIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 850 DEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccc--eEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 9999999999999999999999999999999999974 689999999983 579999999999965
No 409
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.77 E-value=3.2e-18 Score=203.42 Aligned_cols=136 Identities=27% Similarity=0.432 Sum_probs=109.7
Q ss_pred CCCCCHHHHHHHHHhhcCCCC---CC---HHHHHHHHHHHHHHcCCCcc-ccccccCCccCccCHHHHHHHHHHHHHhhC
Q 044602 179 LPQLTVEETLVFAAFLRLPGN---MN---RQQKYARVQMILKELGLERC-RHTRVGGGFIKGISGGERKRTSIGYEILVD 251 (674)
Q Consensus 179 ~~~lTV~e~l~~~~~~~~~~~---~~---~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~iA~aL~~~ 251 (674)
+..+||.|.+.|...+..+.. .. -++..++++ .|+.+||.+. .|+.+ .+|||||||||.||++|..+
T Consensus 434 ~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~-----~~LSgGE~QRv~LA~aL~~~ 507 (943)
T PRK00349 434 VSELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSG 507 (943)
T ss_pred HhcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCch-----hhCCHHHHHHHHHHHHHhhC
Confidence 345799999998544322110 00 012334443 6888899765 67665 48999999999999999999
Q ss_pred C--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEE------eCCEEEEecChhHHH
Q 044602 252 P--SLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLI------SEGYPVYYGKARESM 322 (674)
Q Consensus 252 P--~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 322 (674)
| ++++|||||+|||+.....+.+.|++++++|.|||+++|++.. + ..||+|++| ++|++++.|+++++.
T Consensus 508 ~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~-i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~ 584 (943)
T PRK00349 508 LTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDT-I-RAADYIVDIGPGAGVHGGEVVASGTPEEIM 584 (943)
T ss_pred CCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhCCEEEEeccccCCCCCEEeeccCHHHHh
Confidence 7 9999999999999999999999999998889999999999764 4 569999999 999999999999874
No 410
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.76 E-value=3e-18 Score=165.51 Aligned_cols=75 Identities=28% Similarity=0.476 Sum_probs=68.2
Q ss_pred ccCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEe
Q 044602 233 GISGGERKRTSIGYEILV----DPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLIS 308 (674)
Q Consensus 233 ~LSgGerqRv~iA~aL~~----~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 308 (674)
+||+||+||+++|++|.. +|+++++|||++|+|+.....+.+.+.++.++|.++|++||++. +.+.+|+++.|+
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~--~~~~~d~~~~l~ 154 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPE--LAELADKLIHIK 154 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhhhhEEEEE
Confidence 499999999999999987 78999999999999999999999999988666899999999975 467799999996
Q ss_pred C
Q 044602 309 E 309 (674)
Q Consensus 309 ~ 309 (674)
.
T Consensus 155 ~ 155 (162)
T cd03227 155 K 155 (162)
T ss_pred E
Confidence 4
No 411
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.76 E-value=5e-18 Score=201.40 Aligned_cols=135 Identities=27% Similarity=0.398 Sum_probs=106.8
Q ss_pred CCCCHHHHHHHHHhhcCCCCCCH------HHHHHHHHHHHHHcCCCcc-ccccccCCccCccCHHHHHHHHHHHHHhhCC
Q 044602 180 PQLTVEETLVFAAFLRLPGNMNR------QQKYARVQMILKELGLERC-RHTRVGGGFIKGISGGERKRTSIGYEILVDP 252 (674)
Q Consensus 180 ~~lTV~e~l~~~~~~~~~~~~~~------~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P 252 (674)
..|||.|.+.|...+.....-.. ++..+++ +.+..+||... .++.+ .+|||||+|||.||++|+.+|
T Consensus 433 ~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~r~~-----~tLSGGE~QRv~LA~aL~~~~ 506 (924)
T TIGR00630 433 SELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLSRAA-----GTLSGGEAQRIRLATQIGSGL 506 (924)
T ss_pred hcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccCCCc-----CcCCHHHHHHHHHHHHHhhCC
Confidence 45799999988765432210000 1111222 34667788654 45544 589999999999999999986
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEE------eCCEEEEecChhHHH
Q 044602 253 --SLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLI------SEGYPVYYGKARESM 322 (674)
Q Consensus 253 --~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 322 (674)
++++|||||+|||+.+...+.+.|++++++|.|||+++|++.. + ..||+|++| ++|++++.|+++++.
T Consensus 507 ~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~-i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 507 TGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEET-I-RAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred CCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHH-H-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 8999999999999999999999999998889999999999753 4 589999999 899999999998874
No 412
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.73 E-value=1e-17 Score=167.54 Aligned_cols=156 Identities=16% Similarity=0.155 Sum_probs=105.7
Q ss_pred eeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHh
Q 044602 114 GITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAF 193 (674)
Q Consensus 114 ~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~ 193 (674)
..++++.+|++++|+|||||||||||++|++.......|... ...+..+++..|. +..++..+
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~-------~~~~~~i~~~dqi---~~~~~~~d------- 83 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFV-------PAESASIPLVDRI---FTRIGAED------- 83 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCc-------cccccccCCcCEE---EEEecCcc-------
Confidence 345556689999999999999999999999533111122110 0012234443322 11111111
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 044602 194 LRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLI 273 (674)
Q Consensus 194 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~ 273 (674)
..+.. ...++++++| ++.+.+++.+|+++++||||+|||+.....+.
T Consensus 84 ---------------------------~i~~~-----~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~ 130 (202)
T cd03243 84 ---------------------------SISDG-----RSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIA 130 (202)
T ss_pred ---------------------------cccCC-----ceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHH
Confidence 11111 1256666665 66667889999999999999999999888876
Q ss_pred H-HHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHH
Q 044602 274 Q-VLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 274 ~-~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
. .++.+.+.+.++|++||++ ++.+.+|++..++.|++...++..++
T Consensus 131 ~~ll~~l~~~~~~vi~~tH~~--~~~~~~~~~~~l~~~~~~~~~~~~~~ 177 (202)
T cd03243 131 YAVLEHLLEKGCRTLFATHFH--ELADLPEQVPGVKNLHMEELITTGGL 177 (202)
T ss_pred HHHHHHHHhcCCeEEEECChH--HHHHHhhcCCCeEEEEEEEEecCCee
Confidence 5 5677776789999999985 46778999999999999988876444
No 413
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=7.1e-17 Score=168.75 Aligned_cols=77 Identities=14% Similarity=0.230 Sum_probs=62.8
Q ss_pred cCccCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhc
Q 044602 231 IKGISGGERKRTSIGYEIL---------VDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMF 301 (674)
Q Consensus 231 ~~~LSgGerqRv~iA~aL~---------~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~ 301 (674)
.+-+|+||||+++||++|+ .+|+++++||||++||+..+..+.+.++++. .+++++|+.. .+...|
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~----q~ii~~~~~~-~~~~~~ 255 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV----QTFVTTTDLA-DFDALW 255 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC----CEEEEeCCch-hccchh
Confidence 3458999999999999985 7999999999999999999999999997652 3555555533 355666
Q ss_pred ---CEEEEEeCCEE
Q 044602 302 ---DKLLLISEGYP 312 (674)
Q Consensus 302 ---D~v~~L~~G~i 312 (674)
++++.+++|++
T Consensus 256 ~~~~~i~~l~~g~i 269 (270)
T cd03242 256 LRRAQIFRVDAGTL 269 (270)
T ss_pred ccCccEEEEeCcEE
Confidence 68999999985
No 414
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.67 E-value=9.9e-17 Score=160.54 Aligned_cols=135 Identities=21% Similarity=0.251 Sum_probs=99.7
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEE-EEccCCCCCCCCCHHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIG-FVTQDDVLLPQLTVEET 187 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~ig-yv~Q~~~l~~~lTV~e~ 187 (674)
+.+.+|+++++++|++++|+||||+||||+++++++.. +..++| +| +...+.+++.|+
T Consensus 16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~------------------~la~~G~~v---pa~~~~l~~~d~ 74 (204)
T cd03282 16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA------------------IMAQIGCFV---PAEYATLPIFNR 74 (204)
T ss_pred cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH------------------HHHHcCCCc---chhhcCccChhh
Confidence 56899999999999999999999999999999999753 111222 23 334455667776
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 044602 188 LVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDST 267 (674)
Q Consensus 188 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~ 267 (674)
|... ++..+..+.. .+.+|+|++|+ +.+.+++.+|+++++|||++|+|+.
T Consensus 75 I~~~------------------------~~~~d~~~~~-----~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~ 124 (204)
T cd03282 75 LLSR------------------------LSNDDSMERN-----LSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSA 124 (204)
T ss_pred eeEe------------------------cCCccccchh-----hhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHH
Confidence 6422 2222222222 23799999975 5566789999999999999999998
Q ss_pred HHHHH-HHHHHHHHhCCcEEEEEecCCc
Q 044602 268 SANKL-IQVLQKVAKAGRTVITTIHQPS 294 (674)
Q Consensus 268 ~~~~i-~~~L~~l~~~g~tvi~~~H~~~ 294 (674)
....+ .+.++.+.+.|.++|++||+..
T Consensus 125 ~~~~l~~~il~~l~~~~~~~i~~TH~~~ 152 (204)
T cd03282 125 DGFAISLAILECLIKKESTVFFATHFRD 152 (204)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEECChHH
Confidence 76665 4567778778999999999954
No 415
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=1.3e-16 Score=168.14 Aligned_cols=212 Identities=25% Similarity=0.322 Sum_probs=147.6
Q ss_pred hcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC-CCCccEEEECCEeCC-------h-hc---c
Q 044602 99 ASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT-DDVKGNITYNDIPYN-------P-AL---K 166 (674)
Q Consensus 99 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~-~~~~G~I~~~g~~~~-------~-~~---~ 166 (674)
+.++..+...+..+.|-|++|-.|..++++||||-||||||+-|+.|-- -|..=+|++..+++- . -+ .
T Consensus 267 iEnF~ISA~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~ 346 (807)
T KOG0066|consen 267 IENFDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADK 346 (807)
T ss_pred eeeeeeecccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhH
Confidence 4556666666889999999999999999999999999999999997642 122344555544331 0 00 1
Q ss_pred ccEEEEccCCC-----CCCCCCHHHHHHHHH-hhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHH
Q 044602 167 RRIGFVTQDDV-----LLPQLTVEETLVFAA-FLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERK 240 (674)
Q Consensus 167 ~~igyv~Q~~~-----l~~~lTV~e~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 240 (674)
++...+..++. --...|+.|.+.-.+ .++- +.....+.++..+|.-+|.+.....+ ....+|||=|-
T Consensus 347 kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELra---iGA~sAEarARRILAGLGFskEMQ~r----Pt~kFSGGWRM 419 (807)
T KOG0066|consen 347 KRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRA---IGADSAEARARRILAGLGFSKEMQER----PTTKFSGGWRM 419 (807)
T ss_pred HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHH---hccccchhHHHHHHhhcCCChhHhcC----CccccCCceee
Confidence 11111111110 112346666554222 2221 11223345677888888887544332 23479999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEE-EecChh
Q 044602 241 RTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPV-YYGKAR 319 (674)
Q Consensus 241 Rv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~ 319 (674)
||++||||...|-+|.|||||+.||-.....+-+.|+.+. +|.++++||.. .+-..|..|+-|++-++- |.|...
T Consensus 420 RvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTLLIVSHDQg-FLD~VCtdIIHLD~qkLhyYrGNY~ 495 (807)
T KOG0066|consen 420 RVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQG-FLDSVCTDIIHLDNQKLHYYRGNYT 495 (807)
T ss_pred ehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh---heeEEEecccc-hHHHHHHHHhhhhhhhhhhhcchHH
Confidence 9999999999999999999999999999999888988875 59999999965 477889999999988765 456654
Q ss_pred HH
Q 044602 320 ES 321 (674)
Q Consensus 320 ~~ 321 (674)
-.
T Consensus 496 ~F 497 (807)
T KOG0066|consen 496 LF 497 (807)
T ss_pred HH
Confidence 33
No 416
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.63 E-value=1.1e-15 Score=154.45 Aligned_cols=157 Identities=20% Similarity=0.150 Sum_probs=109.9
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETL 188 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l 188 (674)
+.+.+|++++.++ ++++|.||||||||||||.+++....... |..+.. .+..++++.| +++.+++.|++
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~------g~~vp~-~~~~i~~~~~---i~~~~~~~~~l 86 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQI------GSFVPA-SKAEIGVVDR---IFTRIGASDDL 86 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhcc------CCeecc-ccceecceee---EeccCCchhhh
Confidence 4589999999988 99999999999999999999864321111 222221 2345777765 56777777766
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCH--HHHHHHHHHHHHhhCCCEEEEeCC---CCC
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISG--GERKRTSIGYEILVDPSLLLLDEP---TSG 263 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg--GerqRv~iA~aL~~~P~illLDEP---Tsg 263 (674)
..+ .|. .|+++++-+...+.+|++++|||| |++
T Consensus 87 s~g------------------------------------------~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~ 124 (216)
T cd03284 87 AGG------------------------------------------RSTFMVEMVETANILNNATERSLVLLDEIGRGTST 124 (216)
T ss_pred ccC------------------------------------------cchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCCh
Confidence 532 111 233344444444679999999999 888
Q ss_pred CCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 264 LDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 264 LD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+|.... ....++.+.+. +.++|++||+. ++.+++|++.-+.+|++...++.+++.
T Consensus 125 lD~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~~~~~~v~~~~~~~~~~~~~l~ 180 (216)
T cd03284 125 YDGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELEGKLPRVKNFHVAVKEKGGGVV 180 (216)
T ss_pred HHHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHhhcCCCeEEEEEEEEeeCCeEE
Confidence 887652 23345555555 89999999995 578889998888899988877766653
No 417
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.60 E-value=3.1e-15 Score=155.51 Aligned_cols=139 Identities=18% Similarity=0.240 Sum_probs=97.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCC-----hhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCC
Q 044602 123 EILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN-----PALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLP 197 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~-----~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~ 197 (674)
.-++|+||||||||||+++|+|.+. +.+|+|.++|+++. .++.+.+++++|++ +.+.++|.||..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~-~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~-------- 181 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS-TGISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCP-------- 181 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC-CCCceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccch--------
Confidence 5789999999999999999999884 45999999999874 13445678888865 334455555321
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 044602 198 GNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQ 277 (674)
Q Consensus 198 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~ 277 (674)
+.+ |. .......+|+++++|||++ ...+...++
T Consensus 182 ----k~~--------------------------------~~-----~~~i~~~~P~villDE~~~------~e~~~~l~~ 214 (270)
T TIGR02858 182 ----KAE--------------------------------GM-----MMLIRSMSPDVIVVDEIGR------EEDVEALLE 214 (270)
T ss_pred ----HHH--------------------------------HH-----HHHHHhCCCCEEEEeCCCc------HHHHHHHHH
Confidence 000 10 1223336999999999974 333445555
Q ss_pred HHHhCCcEEEEEecCCchHHH------------hhcCEEEEEeCCEEEEecChhHH
Q 044602 278 KVAKAGRTVITTIHQPSSRMF------------HMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 278 ~l~~~g~tvi~~~H~~~~~i~------------~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
.+ ++|.++|+++|+++.+-. ..|||+++|++|+ ..|+++++
T Consensus 215 ~~-~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i 267 (270)
T TIGR02858 215 AL-HAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAV 267 (270)
T ss_pred HH-hCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeec
Confidence 54 369999999998643212 6689999999887 66666554
No 418
>PRK00064 recF recombination protein F; Reviewed
Probab=99.54 E-value=2e-13 Score=148.47 Aligned_cols=77 Identities=22% Similarity=0.332 Sum_probs=65.3
Q ss_pred CccCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhc-
Q 044602 232 KGISGGERKRTSIGYEIL---------VDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMF- 301 (674)
Q Consensus 232 ~~LSgGerqRv~iA~aL~---------~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~- 301 (674)
..+|+||+|++++|+.|+ .+|+|++||||+++||+..+..+.+.+.++ +..+++++|++.. +...+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~~-~~~~~~ 347 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLED-LADLLE 347 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChhh-hhhhhc
Confidence 469999999999999886 799999999999999999999999988754 4588999998643 44443
Q ss_pred -CEEEEEeCCEE
Q 044602 302 -DKLLLISEGYP 312 (674)
Q Consensus 302 -D~v~~L~~G~i 312 (674)
++++.+++|++
T Consensus 348 ~~~i~~v~~G~i 359 (361)
T PRK00064 348 NAKIFHVEQGKI 359 (361)
T ss_pred cCcEEEEeCCEE
Confidence 57999999986
No 419
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.52 E-value=5.6e-14 Score=148.75 Aligned_cols=176 Identities=26% Similarity=0.374 Sum_probs=133.5
Q ss_pred ccceeeeEEEEeCC-----eEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCC-CCCCC
Q 044602 109 KHILKGITGSICPG-----EILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDV-LLPQL 182 (674)
Q Consensus 109 ~~iL~~vs~~i~~G-----e~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~-l~~~l 182 (674)
+.-+-+..+.|+.| |++..+|.||.|||||++.++|+++++..|+|-. -.++|=||.-. -+..
T Consensus 349 ~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~----------lnVSykpqkispK~~~- 417 (592)
T KOG0063|consen 349 KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPV----------LNVSYKPQKISPKREG- 417 (592)
T ss_pred eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccc----------cceeccccccCccccc-
Confidence 44567777888777 5789999999999999999999987665555532 24667777632 2333
Q ss_pred CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 044602 183 TVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTS 262 (674)
Q Consensus 183 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTs 262 (674)
||++.+.--. + +.-..-+-+.++++-|.+++..|..| .+|||||.|||++|..|=..+++++.|||.+
T Consensus 418 tvR~ll~~kI--r-----~ay~~pqF~~dvmkpL~ie~i~dqev-----q~lSggelQRval~KOGGKpAdvYliDEpsA 485 (592)
T KOG0063|consen 418 TVRQLLHTKI--R-----DAYMHPQFVNDVMKPLQIENIIDQEV-----QGLSGGELQRVALALCLGKPADVYLIDEPSA 485 (592)
T ss_pred hHHHHHHHHh--H-----hhhcCHHHHHhhhhhhhHHHHHhHHh-----hcCCchhhHHHHHHHhcCCCCceEEecCchh
Confidence 8988664211 1 01112245678888888888888765 4899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH-hCCcEEEEEecCCchHHHhhcCEEEEEe
Q 044602 263 GLDSTSANKLIQVLQKVA-KAGRTVITTIHQPSSRMFHMFDKLLLIS 308 (674)
Q Consensus 263 gLD~~~~~~i~~~L~~l~-~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 308 (674)
-||++.+..--+.+++.- +.++|-.++-||.-- .-.++|||++.+
T Consensus 486 ylDSeQRi~AskvikRfilhakktafvVEhdfIm-aTYladrvivf~ 531 (592)
T KOG0063|consen 486 YLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIM-ATYLADRVIVFE 531 (592)
T ss_pred hcChHHHHHHHHHHHHHHHhccchhhhhhhHHHH-HHhhcceeEEEe
Confidence 999999998888888854 458999999999643 235789987764
No 420
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.50 E-value=1.2e-14 Score=143.46 Aligned_cols=80 Identities=16% Similarity=0.115 Sum_probs=58.4
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeC
Q 044602 232 KGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLI-QVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISE 309 (674)
Q Consensus 232 ~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~-~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~ 309 (674)
..+|+|++|...+.+ .+.+|+++++|||++|+|+.....+. ..++.+.++ +.++|++||++ ++.+.+|+---+.+
T Consensus 60 s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~~~~~~~~v~~ 136 (185)
T smart00534 60 STFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTKLADEHPGVRN 136 (185)
T ss_pred cHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHHHhhcCccceE
Confidence 368888777433332 34599999999999999999887765 556777764 89999999996 46788876444444
Q ss_pred CEEEE
Q 044602 310 GYPVY 314 (674)
Q Consensus 310 G~iv~ 314 (674)
++...
T Consensus 137 ~~~~~ 141 (185)
T smart00534 137 LHMSA 141 (185)
T ss_pred EEEEE
Confidence 44443
No 421
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.46 E-value=7.1e-14 Score=124.50 Aligned_cols=73 Identities=18% Similarity=0.078 Sum_probs=62.2
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTV 184 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV 184 (674)
+.+|+++++++++||.++|+||||||||||++++. +|++.++|.++.. ..++.+++++|+ +|+. |+
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~-------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~-ti 71 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI-------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEI-RL 71 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh-------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchh-hH
Confidence 45899999999999999999999999999999986 6899999998742 345567788777 6665 99
Q ss_pred HHHHHHH
Q 044602 185 EETLVFA 191 (674)
Q Consensus 185 ~e~l~~~ 191 (674)
+|||.+.
T Consensus 72 ~~Ni~~~ 78 (107)
T cd00820 72 RLNIFLI 78 (107)
T ss_pred Hhhceee
Confidence 9999873
No 422
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.46 E-value=4.2e-13 Score=135.78 Aligned_cols=88 Identities=28% Similarity=0.491 Sum_probs=65.4
Q ss_pred HHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 044602 207 ARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEIL----VDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA 282 (674)
Q Consensus 207 ~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~----~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~ 282 (674)
+.+.+.++..++... .+|||||.+++||.-|+ .+.++++||||.++||...+..+.+.|+++.+
T Consensus 121 ~~~~~~l~~~~i~~~-----------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~- 188 (220)
T PF02463_consen 121 KDLEELLPEVGISPE-----------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK- 188 (220)
T ss_dssp HHHHHHHHCTTTTTT-----------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-
T ss_pred ccccccccccccccc-----------ccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 445566666555432 69999999999996654 46789999999999999999999999999865
Q ss_pred CcEEEEEecCCchHHHhhcCEEEEEe
Q 044602 283 GRTVITTIHQPSSRMFHMFDKLLLIS 308 (674)
Q Consensus 283 g~tvi~~~H~~~~~i~~~~D~v~~L~ 308 (674)
+.-+|++||++ .++..+|+.+.+.
T Consensus 189 ~~Q~ii~Th~~--~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 189 QSQFIITTHNP--EMFEDADKLIGVT 212 (220)
T ss_dssp TSEEEEE-S-H--HHHTT-SEEEEEE
T ss_pred ccccccccccc--ccccccccccccc
Confidence 58899999996 4688999987764
No 423
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.44 E-value=7.5e-13 Score=133.58 Aligned_cols=132 Identities=23% Similarity=0.243 Sum_probs=88.7
Q ss_pred cceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCC-CCCHHHHH
Q 044602 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLP-QLTVEETL 188 (674)
Q Consensus 110 ~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~-~lTV~e~l 188 (674)
.|-+|+++.=..+..++|.||||+|||||||.++....-...|...... .-.++|..|....+. ..++.+
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~-------~~~~~~~d~i~~~l~~~~si~~-- 87 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPAD-------SATIGLVDKIFTRMSSRESVSS-- 87 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcC-------CcEEeeeeeeeeeeCCccChhh--
Confidence 4556666543223799999999999999999998321101245443221 234677777532211 111111
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccC--HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGIS--GGERKRTSIGYEILVDPSLLLLDEPTSGLDS 266 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS--gGerqRv~iA~aL~~~P~illLDEPTsgLD~ 266 (674)
++| .-|-||++++++++.+|+++++|||++|+|+
T Consensus 88 --------------------------------------------~~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~ 123 (213)
T cd03281 88 --------------------------------------------GQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDT 123 (213)
T ss_pred --------------------------------------------ccchHHHHHHHHHHHHHhCCCCcEEEeccccCCCCH
Confidence 122 3567999999999999999999999999999
Q ss_pred HHHHHH-HHHHHHHHhC---CcEEEEEecCCc
Q 044602 267 TSANKL-IQVLQKVAKA---GRTVITTIHQPS 294 (674)
Q Consensus 267 ~~~~~i-~~~L~~l~~~---g~tvi~~~H~~~ 294 (674)
.....+ ...++++.+. +.++|++||++.
T Consensus 124 ~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~ 155 (213)
T cd03281 124 EDGAGLLIATIEHLLKRGPECPRVIVSTHFHE 155 (213)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcEEEEEcChHH
Confidence 765555 5688888764 358999999964
No 424
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.43 E-value=1.6e-13 Score=161.58 Aligned_cols=136 Identities=26% Similarity=0.332 Sum_probs=93.9
Q ss_pred ccceee-----eEEEEeCC-eEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCC-CCCC
Q 044602 109 KHILKG-----ITGSICPG-EILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDV-LLPQ 181 (674)
Q Consensus 109 ~~iL~~-----vs~~i~~G-e~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~-l~~~ 181 (674)
++++++ +|+.+.+| +.++|.||||+|||||||+++|.......| .+||.... .++
T Consensus 303 hPll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G-----------------~~Vpa~~~~~~~- 364 (771)
T TIGR01069 303 HPLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG-----------------IPIPANEHSEIP- 364 (771)
T ss_pred CceecCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhC-----------------CCccCCcccccc-
Confidence 445544 78888877 999999999999999999999862111122 13333321 111
Q ss_pred CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 044602 182 LTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPT 261 (674)
Q Consensus 182 lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPT 261 (674)
+.+.+. . .+... +.+.+ ....+|+|++++..|++.+ .+|+++|+|||+
T Consensus 365 --~~d~i~-~-------~i~~~------~si~~---------------~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g 412 (771)
T TIGR01069 365 --YFEEIF-A-------DIGDE------QSIEQ---------------NLSTFSGHMKNISAILSKT-TENSLVLFDELG 412 (771)
T ss_pred --chhhee-e-------ecChH------hHHhh---------------hhhHHHHHHHHHHHHHHhc-CCCcEEEecCCC
Confidence 111110 0 00000 00110 1247999999999998876 899999999999
Q ss_pred CCCCHHHHHHH-HHHHHHHHhCCcEEEEEecCCc
Q 044602 262 SGLDSTSANKL-IQVLQKVAKAGRTVITTIHQPS 294 (674)
Q Consensus 262 sgLD~~~~~~i-~~~L~~l~~~g~tvi~~~H~~~ 294 (674)
+|+|+.....+ ...++.+.+.|.++|++||+..
T Consensus 413 ~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~e 446 (771)
T TIGR01069 413 AGTDPDEGSALAISILEYLLKQNAQVLITTHYKE 446 (771)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHH
Confidence 99999999999 5678888878999999999964
No 425
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.40 E-value=5.5e-13 Score=141.34 Aligned_cols=185 Identities=25% Similarity=0.355 Sum_probs=129.2
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--------hccc--------------cEEEEccCCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--------ALKR--------------RIGFVTQDDV 177 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--------~~~~--------------~igyv~Q~~~ 177 (674)
+||++.+++|.||-||||-|++++|.++++. |.-. ++.+..+ ++.. +.-||.|-+.
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnl-g~~~-~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr 175 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNL-GRYD-NPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPR 175 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCC-CCCC-CCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHH
Confidence 5899999999999999999999999987642 2210 1111110 0000 0111111111
Q ss_pred CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEE
Q 044602 178 LLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLL 257 (674)
Q Consensus 178 l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illL 257 (674)
... .+|.++|. +...++..+++++.+.|.+..++.+. .|||||-||.+||.+-+.+.++.++
T Consensus 176 ~~k-~~v~~~l~------------~~~~r~~~~~~~~~~~L~~~~~re~~-----~lsggelqrfaia~~~vq~advyMF 237 (592)
T KOG0063|consen 176 AVK-GTVGSLLD------------RKDERDNKEEVCDQLDLNNLLDREVE-----QLSGGELQRFAIAMVCVQKADVYMF 237 (592)
T ss_pred HHH-HHHHHHHH------------HHhhcccHHHHHHHHHHhhHHHhhhh-----hcccchhhhhhhhhhhhhhcceeEe
Confidence 111 13333332 22223356778888888888887664 8999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeC-----CEEEEecChhHHHHHH
Q 044602 258 DEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISE-----GYPVYYGKARESMEYF 325 (674)
Q Consensus 258 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~-----G~iv~~G~~~~~~~~f 325 (674)
|||.+-||...+..-...++.+...++=||++-||.+ .+..+.|-+..|.. |-+.---+..+..+-|
T Consensus 238 DEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLs-VLDylSDFiCcLYGvp~aYGVVT~Pfsvr~giniF 309 (592)
T KOG0063|consen 238 DEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLS-VLDYLSDFICCLYGVPSAYGVVTMPFSVREGINIF 309 (592)
T ss_pred cCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeech-HHHhhhcceeEEecCCccceEEEeccchhhhhhhh
Confidence 9999999999999999999999888999999999986 35667888888863 3333333455555544
No 426
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.37 E-value=9.1e-11 Score=120.03 Aligned_cols=145 Identities=19% Similarity=0.191 Sum_probs=118.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044602 506 YRLSVYYVCSTLCDMVAHVFYPTIFMVIVYFMAGFKRTVPCFFLTLFAILLVAITSQGAGELFGAAVLSIKRAGMIASLI 585 (674)
Q Consensus 506 Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~m~gl~~~~~~F~~f~~~~~l~~~~~~s~~~~i~a~~~~~~~A~~~~~~~ 585 (674)
-++..|+++|.+..++..++..+++..+.|++.+++. ..++.+++..++..++..++|.++++..++.+.++.+.+++
T Consensus 87 ~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~~~~~i~~~~ 164 (236)
T TIGR01247 87 ASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARMDSMEGFQIIMSML 164 (236)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3678999999999999999999999999998877553 34555556666777888999999999999999999999999
Q ss_pred HHHHHHHhhcccC--CChhhhHhhHhhcHHHHHHHHhhcc-cCCCCCCCCCCccccCCCCchHHHHHHHHHHHHHHHHHH
Q 044602 586 LMLFLLTGGYYVQ--HIPKFMQWLKYLSFLYYGFRLLLKP-RGCRNLQSSPSFDTVNLSGGLQEVWVLLGMALAYRLCAY 662 (674)
Q Consensus 586 ~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Ya~eal~~n-~gc~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~ 662 (674)
..+++.+||.+.| .+|+|++|+.+++|.+|+.|++-.. .| . .+..+.+.++++++.+.+++.+++.
T Consensus 165 ~~~l~~lsG~~~P~~~~P~~~~~i~~~~P~~~~~~~~r~~~~~------~-----~~~~~~~~~~~~l~~~~~~~~~l~~ 233 (236)
T TIGR01247 165 MLPMFFLSGAFYPITTMPAWMQGLAKINPLTYAVDGARYYLAG------V-----SPTFPLEQDLLVLTLLAVIFVGIAA 233 (236)
T ss_pred HHHHHHHHHhhcCHHhCHHHHHHHHHHCcHHHHHHHHHHHHhC------C-----CcccchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998 8999999999999999999996643 11 0 0123456788888888887777664
Q ss_pred H
Q 044602 663 F 663 (674)
Q Consensus 663 ~ 663 (674)
.
T Consensus 234 ~ 234 (236)
T TIGR01247 234 V 234 (236)
T ss_pred H
Confidence 3
No 427
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.35 E-value=8.6e-13 Score=133.05 Aligned_cols=45 Identities=20% Similarity=0.257 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHh
Q 044602 237 GERKRTSIGYEILVDPSLLLLDEPT-----SGLDSTSANKLIQVLQKVAK 281 (674)
Q Consensus 237 GerqRv~iA~aL~~~P~illLDEPT-----sgLD~~~~~~i~~~L~~l~~ 281 (674)
-|++++.||++++.+|+++++|||| +|||+.++..+.+.++++++
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 3999999999999999999999999 99999999999999999875
No 428
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.35 E-value=5.7e-12 Score=127.74 Aligned_cols=134 Identities=19% Similarity=0.205 Sum_probs=88.8
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETL 188 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l 188 (674)
+.+.+|+++.+++|++++|.||||+||||+++++++.......|...... . -.++|..|- +..+...|++
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-~------~~~~~~~~i---~~~~~~~d~~ 87 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-S------ATLSIFDSV---LTRMGASDSI 87 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-c------eEEeccceE---EEEecCcccc
Confidence 56899999999999999999999999999999999843233456543221 1 123332221 1111111111
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccC--HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGIS--GGERKRTSIGYEILVDPSLLLLDEPTSGLDS 266 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS--gGerqRv~iA~aL~~~P~illLDEPTsgLD~ 266 (674)
. .++| ..|-+|++-...-+.+|+++|+|||.+|.|+
T Consensus 88 ~------------------------------------------~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~~ 125 (222)
T cd03287 88 Q------------------------------------------HGMSTFMVELSETSHILSNCTSRSLVILDELGRGTST 125 (222)
T ss_pred c------------------------------------------cccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCCh
Confidence 0 0122 2345555555556678999999999999987
Q ss_pred HHHHHH-HHHHHHHHhC-CcEEEEEecCCc
Q 044602 267 TSANKL-IQVLQKVAKA-GRTVITTIHQPS 294 (674)
Q Consensus 267 ~~~~~i-~~~L~~l~~~-g~tvi~~~H~~~ 294 (674)
.....+ ...++.+.+. +.++|++||++.
T Consensus 126 ~d~~~i~~~il~~l~~~~~~~~i~~TH~~~ 155 (222)
T cd03287 126 HDGIAIAYATLHYLLEEKKCLVLFVTHYPS 155 (222)
T ss_pred hhHHHHHHHHHHHHHhccCCeEEEEcccHH
Confidence 777765 5667777775 889999999964
No 429
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.34 E-value=3.3e-12 Score=131.47 Aligned_cols=174 Identities=19% Similarity=0.213 Sum_probs=106.9
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC-CccEEEE--CCEe-CCh-hccc---cEEEEccCCCCCCCCCHHHH
Q 044602 116 TGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD-VKGNITY--NDIP-YNP-ALKR---RIGFVTQDDVLLPQLTVEET 187 (674)
Q Consensus 116 s~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~-~~G~I~~--~g~~-~~~-~~~~---~igyv~Q~~~l~~~lTV~e~ 187 (674)
=+.+.+||.++|+||+|+|||||++.+++..... .+..+.+ -+.+ .+. ++.+ .+-.+.+-+. +..+.
T Consensus 10 ~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~-----~~~~~ 84 (249)
T cd01128 10 FAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE-----PPERH 84 (249)
T ss_pred ecccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCC-----CHHHH
Confidence 3578899999999999999999999999866432 1122222 1211 111 1222 1222223221 11111
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHH-----------cCCCccccccccCCccCccCHHH--------HHHHHHHHHH
Q 044602 188 LVFAAFLRLPGNMNRQQKYARVQMILKE-----------LGLERCRHTRVGGGFIKGISGGE--------RKRTSIGYEI 248 (674)
Q Consensus 188 l~~~~~~~~~~~~~~~~~~~~v~~~l~~-----------lgL~~~~~~~vg~~~~~~LSgGe--------rqRv~iA~aL 248 (674)
+.... ...+.++...+. -.+.+..++.++.. .+.+|||| +||+++||++
T Consensus 85 ~~~~~-----------~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~-G~~~sgG~~~~~~~~~~q~~~~Ar~~ 152 (249)
T cd01128 85 VQVAE-----------MVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPS-GKILSGGVDANALHKPKRFFGAARNI 152 (249)
T ss_pred HHHHH-----------HHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccC-CCCCCCCcChhhhhhhHHHHHHhcCC
Confidence 11100 000111111100 01123334444332 34589999 9999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHH-HHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEE
Q 044602 249 LVDPSLLLLDEPTSGLDSTSANK-LIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYP 312 (674)
Q Consensus 249 ~~~P~illLDEPTsgLD~~~~~~-i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 312 (674)
..+++|.+| ||+.+|+.+... ++ +.++...+.|.|+.+|+... ...+|.|.+|+.|++
T Consensus 153 ~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~--~~~~paI~vl~s~sr 211 (249)
T cd01128 153 EEGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAE--RRIFPAIDILKSGTR 211 (249)
T ss_pred CCCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhh--CCCCCeEEEcCCCCc
Confidence 999999999 999999766554 54 55555468899999999865 788999999999987
No 430
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=99.33 E-value=3.9e-11 Score=120.36 Aligned_cols=148 Identities=18% Similarity=0.116 Sum_probs=120.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044602 507 RLSVYYVCSTLCDMVAHVFYPTIFMVIVYFMAGFKRTVPCFFLTLFAILLVAITSQGAGELFGAAVLSIKRAGMIASLIL 586 (674)
Q Consensus 507 ~~~ay~la~~l~~lp~~~~~~~if~~i~Y~m~gl~~~~~~F~~f~~~~~l~~~~~~s~~~~i~a~~~~~~~A~~~~~~~~ 586 (674)
+...++++|.+..++..+++++++..+.|++.|++.. +++.+++.+++..++..+++.++++++++...+ ...+.+
T Consensus 58 ~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~--~~~~~~ 133 (208)
T TIGR03062 58 RSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGRF--LALVLL 133 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHH--HHHHHH
Confidence 4567799999999999999999999999999999864 567777888889999999999999999876543 344455
Q ss_pred HHHHHHhhcccC--CChhhhHhhHhhcHHHHHHHHhhcccCCCCCCCCCCccccCCCCchHHHHHHHHHHHHHHHHHHHH
Q 044602 587 MLFLLTGGYYVQ--HIPKFMQWLKYLSFLYYGFRLLLKPRGCRNLQSSPSFDTVNLSGGLQEVWVLLGMALAYRLCAYFC 664 (674)
Q Consensus 587 ~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Ya~eal~~n~gc~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~ 664 (674)
.+.++++|.+.| .+|+|++|+.|++|.+|+.+++-.+. .++ .....|.++++|+++.+++.++++..
T Consensus 134 ~~~~~~sG~~~P~~~~P~~~~~i~~~~P~t~~~~~~r~~~----~~~-------~~~~~~~~~~~L~~~~~v~~~la~~~ 202 (208)
T TIGR03062 134 VLQLGSSGGTFPIELLPAFFQAIHPFLPMTYSVNGLRQLI----SGG-------NDGTLWQAVAVLLLILVVFLALSLLS 202 (208)
T ss_pred HHHHccCCCccchhhCHHHHHHhhhhCcHHHHHHHHHHHH----hCC-------cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677888888 89999999999999999999986440 000 02346889999999999999999988
Q ss_pred HHHhh
Q 044602 665 LRKRI 669 (674)
Q Consensus 665 L~~~~ 669 (674)
+|+|.
T Consensus 203 ~~~~~ 207 (208)
T TIGR03062 203 ARRKR 207 (208)
T ss_pred Hhhhc
Confidence 87664
No 431
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.29 E-value=5.7e-12 Score=144.87 Aligned_cols=77 Identities=21% Similarity=0.357 Sum_probs=70.2
Q ss_pred CccCHHHHHHHHHHHHHhhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEE
Q 044602 232 KGISGGERKRTSIGYEILVD----PSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLI 307 (674)
Q Consensus 232 ~~LSgGerqRv~iA~aL~~~----P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L 307 (674)
+.+||||+||++||++++.. |+++|+||||+|||+.++..+.+.|+++++ +++||++||++. +...||++++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~--~~~~ad~~~~l 515 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQ--VAAHADAHFKV 515 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHH--HHHhcCeEEEE
Confidence 46899999999999999985 699999999999999999999999999975 899999999975 35689999999
Q ss_pred eCCE
Q 044602 308 SEGY 311 (674)
Q Consensus 308 ~~G~ 311 (674)
++|.
T Consensus 516 ~k~~ 519 (563)
T TIGR00634 516 EKEG 519 (563)
T ss_pred EEcc
Confidence 9864
No 432
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.28 E-value=3.4e-11 Score=133.10 Aligned_cols=171 Identities=20% Similarity=0.271 Sum_probs=114.1
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeC---Ch---------hccccEEEEccCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPY---NP---------ALKRRIGFVTQDD 176 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~---~~---------~~~~~igyv~Q~~ 176 (674)
..+++++ +.+.+|+.++|+|+||+|||||+++|+|... +..|.|.+.|+.- .+ .+++.+.+|.+.+
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~-~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~ 223 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTS-ADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSD 223 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccC-CCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCC
Confidence 5689999 9999999999999999999999999999764 4589999965443 21 2567789998654
Q ss_pred CCCCCCCHHHHH--HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccC-HHHHHHHHHHHHHhhCCC
Q 044602 177 VLLPQLTVEETL--VFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGIS-GGERKRTSIGYEILVDPS 253 (674)
Q Consensus 177 ~l~~~lTV~e~l--~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS-gGerqRv~iA~aL~~~P~ 253 (674)
. ++.+-. .+.+ -.+.|.+..-|- |-.+- ..+++ --|-+| ++.
T Consensus 224 ~-----~~~~r~~~~~~a--------------~~iAEyfr~~g~----~Vll~---~Dsltr~A~A~r-----Eis---- 268 (438)
T PRK07721 224 Q-----PALMRIKGAYTA--------------TAIAEYFRDQGL----NVMLM---MDSVTRVAMAQR-----EIG---- 268 (438)
T ss_pred C-----CHHHHHHHHHHH--------------HHHHHHHHHCCC----cEEEE---EeChHHHHHHHH-----HHH----
Confidence 2 222211 1111 112222222231 11110 01111 011111 110
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHh--CCc-----EEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhH
Q 044602 254 LLLLDEP--TSGLDSTSANKLIQVLQKVAK--AGR-----TVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARE 320 (674)
Q Consensus 254 illLDEP--TsgLD~~~~~~i~~~L~~l~~--~g~-----tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 320 (674)
+.+.|| |+|+|+.....+.+.++++.+ +|. ||++.+||.++ .+||++..+.+|+++..++..+
T Consensus 269 -l~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e---~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 269 -LAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE---PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred -HhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc---hhhhhEEEecCEEEEEeccHHH
Confidence 112453 789999999999999999874 575 99999999874 7799999999999999998764
No 433
>PRK10869 recombination and repair protein; Provisional
Probab=99.26 E-value=1.4e-11 Score=140.65 Aligned_cols=77 Identities=21% Similarity=0.382 Sum_probs=69.9
Q ss_pred CccCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEE
Q 044602 232 KGISGGERKRTSIGYEILV----DPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLI 307 (674)
Q Consensus 232 ~~LSgGerqRv~iA~aL~~----~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L 307 (674)
+.+||||+||++||++++. +|+++++|||++|||..++..+.+.|+++++ +.+||++||+|. +...||+.+++
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~--~~~~ad~~~~v 505 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLPQ--VAGCGHQHFFV 505 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHhCCEEEEE
Confidence 3589999999999999997 5899999999999999999999999999975 799999999985 46899999999
Q ss_pred eCCE
Q 044602 308 SEGY 311 (674)
Q Consensus 308 ~~G~ 311 (674)
.++.
T Consensus 506 ~k~~ 509 (553)
T PRK10869 506 SKET 509 (553)
T ss_pred eccc
Confidence 8753
No 434
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.26 E-value=5.2e-12 Score=149.25 Aligned_cols=80 Identities=23% Similarity=0.246 Sum_probs=63.6
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCC
Q 044602 232 KGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQ-VLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEG 310 (674)
Q Consensus 232 ~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~-~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 310 (674)
..+|+|++|++.|++++ .+|+++++|||++|+|+.....+.. .++.+.+.|.++|++||++.. ....+|+..++ ++
T Consensus 389 StfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el-~~~~~~~~~v~-~~ 465 (782)
T PRK00409 389 STFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKEL-KALMYNREGVE-NA 465 (782)
T ss_pred hHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHH-HHHHhcCCCeE-EE
Confidence 47999999999999988 8999999999999999999988865 677777779999999999542 33344544443 45
Q ss_pred EEEE
Q 044602 311 YPVY 314 (674)
Q Consensus 311 ~iv~ 314 (674)
.+.+
T Consensus 466 ~~~~ 469 (782)
T PRK00409 466 SVEF 469 (782)
T ss_pred EEEE
Confidence 5554
No 435
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.26 E-value=1.1e-11 Score=142.79 Aligned_cols=78 Identities=27% Similarity=0.415 Sum_probs=69.2
Q ss_pred cCccCHHHHHHHHHHHHHh----------hCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHh
Q 044602 231 IKGISGGERKRTSIGYEIL----------VDPSLLLLDEPT-SGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFH 299 (674)
Q Consensus 231 ~~~LSgGerqRv~iA~aL~----------~~P~illLDEPT-sgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~ 299 (674)
+..||||||||++||++|+ .+|+++|||||| ++||+.+...+.+.|+++ .|.|||++||++. ...
T Consensus 466 ~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~--~~~ 541 (562)
T PHA02562 466 YASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDH--DPQ 541 (562)
T ss_pred hhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchh--chh
Confidence 4689999999999999887 599999999998 789999999999999998 4899999999964 467
Q ss_pred hcCEEEEEeC-CEE
Q 044602 300 MFDKLLLISE-GYP 312 (674)
Q Consensus 300 ~~D~v~~L~~-G~i 312 (674)
.||++++|.+ |+.
T Consensus 542 ~~d~~~~l~~~~~~ 555 (562)
T PHA02562 542 KFDRHLKMEKVGRF 555 (562)
T ss_pred hhhcEEEEEEECCe
Confidence 7999999985 543
No 436
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=99.24 E-value=2e-09 Score=110.05 Aligned_cols=162 Identities=17% Similarity=0.190 Sum_probs=116.4
Q ss_pred hhhHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044602 493 EKIYLVKERKADMYRLSVYYVCSTLCDMVAHVFYPTIFMVIVYFMAGFKRTVPCFFLTLFAILLVAITSQGAGELFGAAV 572 (674)
Q Consensus 493 er~v~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~m~gl~~~~~~F~~f~~~~~l~~~~~~s~~~~i~a~~ 572 (674)
|+..+.|=+..- .++..|+++|.+..++..++..+++ .+++++.|++..... +..++...+....+.+++.++++++
T Consensus 64 ~~G~l~rl~~~P-~~~~~~l~g~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~ 140 (232)
T TIGR00025 64 RYGALKRLGATP-LPRLGILAGRSLAVVARVFLQTLIL-LVIGFVLGFRFAGGA-LTALTLGAVIIALGTALFAALGLVA 140 (232)
T ss_pred HhCHHHHHhcCC-CcHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccCcCCch-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555444 3788999999998888877665545 455677788865433 2333344455556667777777777
Q ss_pred C---CHHHHHHHHHHHHHHHHHHhhcccC--CChhhhHhhHhhcHHHHHHHHhhcc-cCCCCCCCCCCccccCCCCchHH
Q 044602 573 L---SIKRAGMIASLILMLFLLTGGYYVQ--HIPKFMQWLKYLSFLYYGFRLLLKP-RGCRNLQSSPSFDTVNLSGGLQE 646 (674)
Q Consensus 573 ~---~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Ya~eal~~n-~gc~~~~~~~~~~~~~~~~~~~~ 646 (674)
+ +.+.+..++.++..+++++||.+.| .+|.|++|+.+++|++|+.+++-.. .| ..+....|.+
T Consensus 141 ~~~~~~~~~~~i~~~~~~p~~~lSG~~~P~~~mP~~lq~i~~~~P~t~~~~~~r~~~~~-----------~~~~~~~~~~ 209 (232)
T TIGR00025 141 GGTLQAEIVLAVANLVWFIFALLSAGLVPLNLIPTWIKWFVRVQPSSYATEALRQAATV-----------SVDTFGAVRD 209 (232)
T ss_pred hccccHHHHHHHHHHHHHHHHHHhheeeecccccHHHHHHHHhCcHHHHHHHHHHHHcC-----------CCChhhHHHH
Confidence 4 4555578888888999999999999 9999999999999999999987643 11 0123456788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 044602 647 VWVLLGMALAYRLCAYFCLRKR 668 (674)
Q Consensus 647 ~~il~~~~~~~~~l~~~~L~~~ 668 (674)
+++++++.+++..++....||+
T Consensus 210 ~~~l~~~~~v~~~la~~~~~r~ 231 (232)
T TIGR00025 210 LVVVLAFWVALAALAAIRLRRR 231 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 8888888888887777766654
No 437
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.23 E-value=9e-11 Score=133.44 Aligned_cols=137 Identities=26% Similarity=0.390 Sum_probs=103.6
Q ss_pred CCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHH------HHHcCCCcc-ccccccCCccCccCHHHHHHHHHHHHHhhC
Q 044602 179 LPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMI------LKELGLERC-RHTRVGGGFIKGISGGERKRTSIGYEILVD 251 (674)
Q Consensus 179 ~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~------l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~iA~aL~~~ 251 (674)
+..|++.|.+.|...+.+.. ..+...+..++++ |..+||.-. ++ +...+|||||.||+-+|..+=++
T Consensus 426 ~~~msi~~~~~f~~~l~l~~-~~~~ia~~ilkei~~RL~fL~~VGL~YLtL~-----R~a~TLSGGEaQRIRLAtqiGS~ 499 (935)
T COG0178 426 ISEMSIADALEFFENLKLSE-KEKKIAEPILKEIKERLGFLVDVGLGYLTLS-----RSAGTLSGGEAQRIRLATQIGSG 499 (935)
T ss_pred HhhccHHHHHHHHHhCCCch-hhHHHHHHHHHHHHHHHHHHHHcCcCccccc-----ccCCCcChhHHHHHHHHHHhccc
Confidence 34578888888876655321 1111222223333 333566532 22 23458999999999999999876
Q ss_pred C--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEE------eCCEEEEecChhHHHH
Q 044602 252 P--SLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLI------SEGYPVYYGKARESME 323 (674)
Q Consensus 252 P--~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~~ 323 (674)
= =+++||||+-||-+..-.++++.|++|++.|-|+|++-||+. +.+.+|+|+=| +.|+|++.|+++++++
T Consensus 500 LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDed--ti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~ 577 (935)
T COG0178 500 LTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDED--TIRAADHIIDIGPGAGEHGGEIVAEGTPEELLA 577 (935)
T ss_pred ceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHH--HHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHh
Confidence 4 478999999999999999999999999999999999999964 58889999998 4689999999999974
No 438
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.22 E-value=3.1e-11 Score=148.21 Aligned_cols=80 Identities=20% Similarity=0.272 Sum_probs=73.3
Q ss_pred ccCccCHHHHHHHHHHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHh
Q 044602 230 FIKGISGGERKRTSIGYEILV----------DPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFH 299 (674)
Q Consensus 230 ~~~~LSgGerqRv~iA~aL~~----------~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~ 299 (674)
.++.|||||++||+||++|+. +|++||+||||+|||+.+...+++.|+++.+.|++|++|||++. ....
T Consensus 947 ~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~-~~~~ 1025 (1042)
T TIGR00618 947 PSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPE-FRER 1025 (1042)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHh
Confidence 456899999999999999986 79999999999999999999999999999888999999999975 4788
Q ss_pred hcCEEEEEeCC
Q 044602 300 MFDKLLLISEG 310 (674)
Q Consensus 300 ~~D~v~~L~~G 310 (674)
++|+|.|++.|
T Consensus 1026 ~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1026 IPHRILVKKTN 1036 (1042)
T ss_pred hCCEEEEEECC
Confidence 99999999754
No 439
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=99.22 E-value=6.1e-09 Score=107.96 Aligned_cols=233 Identities=14% Similarity=0.044 Sum_probs=147.8
Q ss_pred HHHHHHHHHHh-hc-chhHHHHHHHHHHHHHHHHHHhcCCCCCCh-HhHHHH--HHHHHHHHHHHHHHHHHHHHH-hhh-
Q 044602 419 HIISRRTFRER-WR-DYFDKLRLVQALGVAVVLGLLWWKSQSTTE-AQLRDQ--VGLIFYICIFWTSSSIFGAVY-VFP- 491 (674)
Q Consensus 419 ~~L~~R~~~~~-r~-~~~~~~r~~~~i~~all~G~lf~~~~~~~~-~~~~~~--~g~lff~~~~~~~~~~~~~i~-~f~- 491 (674)
..+.+|+++.. |+ +......+++-++.-+++|..|-....+.. .+..+. -|.+-+.+++.++ ++... .+.
T Consensus 8 ~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~~~g~~y~~f~~pg~l~~~~~~~~~---~~~~~~~~~~ 84 (253)
T TIGR01291 8 AAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVGSVDGVSYAAFLAAGMVATSAMTAST---FETIYATFAR 84 (253)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 45568998875 44 334445666777676777776533211000 011111 1333222222211 11111 111
Q ss_pred -hhhhHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044602 492 -FEKIYLVKERKADMYRLSVYYVCSTLCDMVAHVFYPTIFMVIVYFMAGFKRTVPCFFLTLFAILLVAITSQGAGELFGA 570 (674)
Q Consensus 492 -~er~v~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~m~gl~~~~~~F~~f~~~~~l~~~~~~s~~~~i~a 570 (674)
.|+..++|-+..-. ++..+.++|++.+.-..++..++...+.+++ |..+. ...+..+..+++..++..++|.++++
T Consensus 85 ~r~~g~~~~l~~~Pv-~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~~-g~~~~-~~~l~~~~~~ll~~l~~~~lg~~~a~ 161 (253)
T TIGR01291 85 MRVTRTWEAMLYTPI-TVGDIVLGEVAWAATKASLAGTIIGVVTATL-GYIEW-WSLIYILPVIALTGLAFASLSMLVAA 161 (253)
T ss_pred HHHcccHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchh-hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12333333333332 6788999999998877777766655555443 44433 33444445556677778899999999
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHhhcccC--CChhhhHhhHhhcHHHHHHHHhhcc-cCCCCCCCCCCccccCCCCchHHH
Q 044602 571 AVLSIKRAGMIASLILMLFLLTGGYYVQ--HIPKFMQWLKYLSFLYYGFRLLLKP-RGCRNLQSSPSFDTVNLSGGLQEV 647 (674)
Q Consensus 571 ~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Ya~eal~~n-~gc~~~~~~~~~~~~~~~~~~~~~ 647 (674)
+.++.+.+..+..++..+++.+||.+.| .+|+|++|+.+++|+.|+.|++-.. .| + +..+.|.++
T Consensus 162 ~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~lq~i~~~nPlt~~v~~~R~~~~g-----~-------~~~~~~~~~ 229 (253)
T TIGR01291 162 LAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLNDVIQGMTHFLPLAHSIDDIRPVMLG-----G-------PGTQVGLHL 229 (253)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChHHHHHHHHHCcHHHHHHHHHHHHhC-----C-------CcHHHHHHH
Confidence 9999999999999999999999999988 8999999999999999999996432 11 0 011345678
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 044602 648 WVLLGMALAYRLCAYFCLRKRI 669 (674)
Q Consensus 648 ~il~~~~~~~~~l~~~~L~~~~ 669 (674)
++++++.+++..++...+|+|.
T Consensus 230 ~~l~~~~vv~~~la~~~fr~~~ 251 (253)
T TIGR01291 230 GALCLYAVVPFFISAALLRRRL 251 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 8888888888888887777653
No 440
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.20 E-value=1.2e-10 Score=118.96 Aligned_cols=150 Identities=19% Similarity=0.302 Sum_probs=91.6
Q ss_pred EEeCCeEEEEEcCCCCcHHHH-HHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcC
Q 044602 118 SICPGEILALMGPSGSGKTTL-LKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRL 196 (674)
Q Consensus 118 ~i~~Ge~~ailG~sGsGKSTL-l~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~ 196 (674)
-+++|++++|.|+|||||||| ++.+++...+ | ..+.|+..+ .|..+.+.....+..
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~---g--------------~~~~yi~~e------~~~~~~~~~~~~~g~ 76 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQN---G--------------YSVSYVSTQ------LTTTEFIKQMMSLGY 76 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhC---C--------------CcEEEEeCC------CCHHHHHHHHHHhCC
Confidence 489999999999999999999 6888875421 1 123455422 255555544322211
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCC----CHHH
Q 044602 197 PGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEIL----VDPSLLLLDEPTSGL----DSTS 268 (674)
Q Consensus 197 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~----~~P~illLDEPTsgL----D~~~ 268 (674)
. .++.... +.-...+ + . ..+|+++.++-.+.+.+- .+|+++++||||+++ |+..
T Consensus 77 --~---------~~~~~~~-~~l~~~~--~---~-~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~ 138 (230)
T PRK08533 77 --D---------INKKLIS-GKLLYIP--V---Y-PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVA 138 (230)
T ss_pred --c---------hHHHhhc-CcEEEEE--e---c-ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHH
Confidence 0 0111111 1000001 0 1 136777665544444333 369999999999999 8888
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCch------HHHhhcCEEEEEe
Q 044602 269 ANKLIQVLQKVAKAGRTVITTIHQPSS------RMFHMFDKLLLIS 308 (674)
Q Consensus 269 ~~~i~~~L~~l~~~g~tvi~~~H~~~~------~i~~~~D~v~~L~ 308 (674)
...+.+.+++++++|.|+++++|+... .+..++|-|+.|+
T Consensus 139 ~~~l~~~l~~l~~~g~tvi~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 139 VNDLMAFFKRISSLNKVIILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecccccccccceeEEEeeeEEEEEE
Confidence 889999999998878887776664321 0234567777776
No 441
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.20 E-value=1.7e-11 Score=123.72 Aligned_cols=63 Identities=35% Similarity=0.518 Sum_probs=54.0
Q ss_pred CccCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q 044602 232 KGISGGERKRTSIGYEILVDP---SLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPS 294 (674)
Q Consensus 232 ~~LSgGerqRv~iA~aL~~~P---~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 294 (674)
..+|.|+||.+.++..+...+ .++++|||-++|+|..+..+++.|+++++.+.-+|++||.|.
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~ 300 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF 300 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence 457999999999998888877 899999999999999999999999888766889999999974
No 442
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=99.19 E-value=9.9e-09 Score=106.25 Aligned_cols=234 Identities=15% Similarity=0.132 Sum_probs=151.2
Q ss_pred HHHHHHHHHHHHHHh-hcchhHHHHHHHHHHHHHHHHHHhcCC-CC------CC--hHhHHHHHHHHHHHHHHHHHHHHH
Q 044602 415 WDQFHIISRRTFRER-WRDYFDKLRLVQALGVAVVLGLLWWKS-QS------TT--EAQLRDQVGLIFYICIFWTSSSIF 484 (674)
Q Consensus 415 ~~Q~~~L~~R~~~~~-r~~~~~~~r~~~~i~~all~G~lf~~~-~~------~~--~~~~~~~~g~lff~~~~~~~~~~~ 484 (674)
+++++.+++|+++.. |++......+++-++.-+++|.+|-.. +. ++ .-...--.|.+-+...+.++.
T Consensus 1 ~~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~--- 77 (253)
T TIGR03861 1 LICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQ--- 77 (253)
T ss_pred ChHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHH---
Confidence 467899999999975 544445556777777777788777332 10 00 001122233333333222221
Q ss_pred HHHH-hhhhhhhHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 044602 485 GAVY-VFPFEKIYLVKERKADMYRLSVYYVCSTLCDMVAHVFYPTIFMVIVYFMAGFKRTVPCFFLTLFAILLVAITSQG 563 (674)
Q Consensus 485 ~~i~-~f~~er~v~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~m~gl~~~~~~F~~f~~~~~l~~~~~~s 563 (674)
.+.. ....|+..+.+=+... .+...+.+++++...-..++..+++.++.+. .|.+.....++.....+++..++..+
T Consensus 78 ~~~~~~~~r~~g~~~~l~~~p-~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~ 155 (253)
T TIGR03861 78 SSLSMVYDREMGSMRVLLTSP-LPRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGA 155 (253)
T ss_pred hhhHhHHhHhcCHHHHHhhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHH
Confidence 1111 1123333444444444 3777899999999988777776655555443 36665544455445555667777889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcccC--CC---hhhhHhhHhhcHHHHHHHHhhcccCCCCCCCCCCcccc
Q 044602 564 AGELFGAAVLSIKRAGMIASLILMLFLLTGGYYVQ--HI---PKFMQWLKYLSFLYYGFRLLLKPRGCRNLQSSPSFDTV 638 (674)
Q Consensus 564 ~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~i---p~~~~Wl~yiSp~~Ya~eal~~n~gc~~~~~~~~~~~~ 638 (674)
+|.++|+++++.+.+..+.++++.+++.++|.+.| .+ |+|++|+.++||+.|..|++-.. - .
T Consensus 156 lgl~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R~~---~-~--------- 222 (253)
T TIGR03861 156 LGLALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELVRFA---L-Y--------- 222 (253)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHHHHH---H-h---------
Confidence 99999999999999998888999999999998876 44 89999999999999999987422 0 0
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 044602 639 NLSGGLQEVWVLLGMALAYRLCAYFCLRK 667 (674)
Q Consensus 639 ~~~~~~~~~~il~~~~~~~~~l~~~~L~~ 667 (674)
+ +..|..+++++++.+++..++....|+
T Consensus 223 g-~~~~~~~~~~~~~~~v~~~~~~~~fr~ 250 (253)
T TIGR03861 223 G-QLNLPALGWTLGATTLFTLLAFWGFDP 250 (253)
T ss_pred C-CcchhHHHHHHHHHHHHHHHHHHHhhc
Confidence 0 013566677777777777777666554
No 443
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.19 E-value=1.5e-10 Score=113.70 Aligned_cols=78 Identities=15% Similarity=0.106 Sum_probs=64.9
Q ss_pred cCccCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCcEEEEEecCCch------
Q 044602 231 IKGISGGERK------RTSIGYEILVDPSLLLLDEPTSGLD---STSANKLIQVLQKVAKAGRTVITTIHQPSS------ 295 (674)
Q Consensus 231 ~~~LSgGerq------Rv~iA~aL~~~P~illLDEPTsgLD---~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~------ 295 (674)
+..+|+||+| +.........+|+++++||||+.+| ......+.+.++.+++.|.|+|+++|+...
T Consensus 69 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~~~ 148 (187)
T cd01124 69 PDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTGFG 148 (187)
T ss_pred ccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCcccC
Confidence 3479999998 4555555667999999999999999 888888889999998889999999998653
Q ss_pred --HHHhhcCEEEEEe
Q 044602 296 --RMFHMFDKLLLIS 308 (674)
Q Consensus 296 --~i~~~~D~v~~L~ 308 (674)
.+..++|.++.|+
T Consensus 149 ~~~~~~~aD~ii~l~ 163 (187)
T cd01124 149 GGDVEYLVDGVIRLR 163 (187)
T ss_pred cCceeEeeeEEEEEE
Confidence 2567899999987
No 444
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.16 E-value=7.6e-11 Score=119.19 Aligned_cols=134 Identities=21% Similarity=0.243 Sum_probs=89.2
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETL 188 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l 188 (674)
+.+-+|+++..++|++++|.||||+||||+++.+++...-... |..+... +..++++ +.++..+...|++
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~------G~~vpa~-~~~i~~~---~~i~~~~~~~d~~ 86 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQM------GMDVPAK-SMRLSLV---DRIFTRIGARDDI 86 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHc------CCccCcc-ccEeccc---cEEEEecCccccc
Confidence 5689999999999999999999999999999999974311101 1111110 0112211 1222222222222
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccC--HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGIS--GGERKRTSIGYEILVDPSLLLLDEPTSGLDS 266 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS--gGerqRv~iA~aL~~~P~illLDEPTsgLD~ 266 (674)
.. ++| ..|-+|++-....+.+|+++++|||.+|+|+
T Consensus 87 ~~------------------------------------------~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~ 124 (218)
T cd03286 87 MK------------------------------------------GESTFMVELSETANILRHATPDSLVILDELGRGTST 124 (218)
T ss_pred cc------------------------------------------CcchHHHHHHHHHHHHHhCCCCeEEEEecccCCCCc
Confidence 11 111 1345555555555678999999999999999
Q ss_pred HHHHHHHHH-HHHHHhC-CcEEEEEecCCc
Q 044602 267 TSANKLIQV-LQKVAKA-GRTVITTIHQPS 294 (674)
Q Consensus 267 ~~~~~i~~~-L~~l~~~-g~tvi~~~H~~~ 294 (674)
.....+... ++.+.+. +.++|++||++.
T Consensus 125 ~dg~~la~ail~~L~~~~~~~~i~~TH~~e 154 (218)
T cd03286 125 HDGYAIAHAVLEYLVKKVKCLTLFSTHYHS 154 (218)
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 999998887 7778775 899999999964
No 445
>PRK13695 putative NTPase; Provisional
Probab=99.14 E-value=1.2e-10 Score=113.75 Aligned_cols=79 Identities=15% Similarity=0.204 Sum_probs=64.1
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEeCC--CCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeC
Q 044602 232 KGISGGERKRTSIGYEILVDPSLLLLDEP--TSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISE 309 (674)
Q Consensus 232 ~~LSgGerqRv~iA~aL~~~P~illLDEP--TsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 309 (674)
..+||+|+-+..+++..+.+|+++++||| +.++|. .+.+.+.++.+.|+++|+++|+. .+...+|+|..+.+
T Consensus 77 ~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~----~~~~~l~~~~~~~~~~i~v~h~~--~~~~~~~~i~~~~~ 150 (174)
T PRK13695 77 VNLEDLERIGIPALERALEEADVIIIDEIGKMELKSP----KFVKAVEEVLDSEKPVIATLHRR--SVHPFVQEIKSRPG 150 (174)
T ss_pred EehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhH----HHHHHHHHHHhCCCeEEEEECch--hhHHHHHHHhccCC
Confidence 36999999999999999999999999995 444443 35566666656799999999984 34677999999999
Q ss_pred CEEEEec
Q 044602 310 GYPVYYG 316 (674)
Q Consensus 310 G~iv~~G 316 (674)
|++.+.-
T Consensus 151 ~~i~~~~ 157 (174)
T PRK13695 151 GRVYELT 157 (174)
T ss_pred cEEEEEc
Confidence 9987763
No 446
>COG3910 Predicted ATPase [General function prediction only]
Probab=99.10 E-value=1.5e-09 Score=104.53 Aligned_cols=79 Identities=23% Similarity=0.357 Sum_probs=59.8
Q ss_pred ccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhh-cCEEEEEe
Q 044602 230 FIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHM-FDKLLLIS 308 (674)
Q Consensus 230 ~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~-~D~v~~L~ 308 (674)
.....|-||-=---+.+.+ ++.-|.+||||-++|.+.-+..++..|+++++.|.-+|+.||.|-- ..+ --.|+-++
T Consensus 126 sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiL--lAiP~A~I~~~~ 202 (233)
T COG3910 126 SLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPIL--LAIPGAEIYEIS 202 (233)
T ss_pred chhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhh--eeCCCcEEEEEe
Confidence 3456899997654444443 4668999999999999999999999999999999999999999842 222 13455555
Q ss_pred CCE
Q 044602 309 EGY 311 (674)
Q Consensus 309 ~G~ 311 (674)
.+-
T Consensus 203 ~~g 205 (233)
T COG3910 203 ESG 205 (233)
T ss_pred cCC
Confidence 443
No 447
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.09 E-value=3.1e-10 Score=120.97 Aligned_cols=144 Identities=18% Similarity=0.214 Sum_probs=95.6
Q ss_pred eeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEe-CChhccccEEEEccCCCCCCCCCHHHHHHHHH
Q 044602 114 GITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIP-YNPALKRRIGFVTQDDVLLPQLTVEETLVFAA 192 (674)
Q Consensus 114 ~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~-~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~ 192 (674)
=+++.+++|+.++|.||+|||||||+++|++.+ ++..|.+.+.... +....+..+.++.+...
T Consensus 136 ~l~~~v~~~~~ili~G~tGsGKTTll~al~~~~-~~~~~iv~ied~~El~~~~~~~~~l~~~~~~--------------- 199 (308)
T TIGR02788 136 FLRLAIASRKNIIISGGTGSGKTTFLKSLVDEI-PKDERIITIEDTREIFLPHPNYVHLFYSKGG--------------- 199 (308)
T ss_pred HHHHHhhCCCEEEEECCCCCCHHHHHHHHHccC-CccccEEEEcCccccCCCCCCEEEEEecCCC---------------
Confidence 367889999999999999999999999999987 4446766664211 00000112222211100
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 044602 193 FLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKL 272 (674)
Q Consensus 193 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i 272 (674)
+. ...++- .-.++.+|-.+|+++++|||.+ .++
T Consensus 200 ---------------------------~~---------~~~~~~----~~~l~~~Lr~~pd~ii~gE~r~-------~e~ 232 (308)
T TIGR02788 200 ---------------------------QG---------LAKVTP----KDLLQSCLRMRPDRIILGELRG-------DEA 232 (308)
T ss_pred ---------------------------CC---------cCccCH----HHHHHHHhcCCCCeEEEeccCC-------HHH
Confidence 00 001111 1134556778999999999996 345
Q ss_pred HHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 273 IQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 273 ~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.+.++.+.....+++.|+|..+. ....||+..|..|++...|.+.+.+
T Consensus 233 ~~~l~a~~~g~~~~i~T~Ha~~~--~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 233 FDFIRAVNTGHPGSITTLHAGSP--EEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHHHhcCCCeEEEEEeCCCH--HHHHHHHHHHhhccccccCCCHHHH
Confidence 66677665423467999999874 6668999999999998888887765
No 448
>PRK03918 chromosome segregation protein; Provisional
Probab=99.08 E-value=2.9e-10 Score=137.87 Aligned_cols=77 Identities=29% Similarity=0.405 Sum_probs=68.4
Q ss_pred ccCccCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCE
Q 044602 230 FIKGISGGERK------RTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDK 303 (674)
Q Consensus 230 ~~~~LSgGerq------Rv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 303 (674)
.+..|||||+| |+++|++++.+|+++++||||+|||+..+..+.+.|..+++.+.+||++||++. +...||+
T Consensus 785 ~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~--~~~~~d~ 862 (880)
T PRK03918 785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEE--LKDAADY 862 (880)
T ss_pred ChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHH--HHHhCCe
Confidence 45679999999 555666788999999999999999999999999999998777889999999963 5789999
Q ss_pred EEEEe
Q 044602 304 LLLIS 308 (674)
Q Consensus 304 v~~L~ 308 (674)
+++|.
T Consensus 863 ~~~l~ 867 (880)
T PRK03918 863 VIRVS 867 (880)
T ss_pred EEEEE
Confidence 99998
No 449
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.07 E-value=2.5e-10 Score=143.11 Aligned_cols=76 Identities=20% Similarity=0.273 Sum_probs=64.1
Q ss_pred cccccCCccCccCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCcEEEEEec
Q 044602 223 HTRVGGGFIKGISGGERK------RTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK-----AGRTVITTIH 291 (674)
Q Consensus 223 ~~~vg~~~~~~LSgGerq------Rv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~-----~g~tvi~~~H 291 (674)
|+.++. ...||||||| |++||++++.+|++|+|||||+|||+.+...+.+.|.++.. .|.|||++||
T Consensus 1191 ~~~~~~--~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitH 1268 (1311)
T TIGR00606 1191 DTALDM--RGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITH 1268 (1311)
T ss_pred CeecCC--CCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEec
Confidence 555542 2479999999 99999999999999999999999999999999999988742 3789999999
Q ss_pred CCchHHHhhc
Q 044602 292 QPSSRMFHMF 301 (674)
Q Consensus 292 ~~~~~i~~~~ 301 (674)
++. .+..+|
T Consensus 1269 d~~-~~~~~~ 1277 (1311)
T TIGR00606 1269 DED-FVELLG 1277 (1311)
T ss_pred CHH-HHHHHh
Confidence 975 355553
No 450
>PRK15066 inner membrane transport permease; Provisional
Probab=99.06 E-value=1.7e-07 Score=97.31 Aligned_cols=239 Identities=17% Similarity=0.134 Sum_probs=147.1
Q ss_pred HHHHHHHHHHHHHHHhhcch--hHHHHHHHHHHHHHHHHHHhcC-CCC-CChH-hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044602 414 WWDQFHIISRRTFRERWRDY--FDKLRLVQALGVAVVLGLLWWK-SQS-TTEA-QLRDQVGLIFYICIFWTSSSIFGAVY 488 (674)
Q Consensus 414 ~~~Q~~~L~~R~~~~~r~~~--~~~~r~~~~i~~all~G~lf~~-~~~-~~~~-~~~~~~g~lff~~~~~~~~~~~~~i~ 488 (674)
.|+-++.+.+|+.+..+|++ ....-+++.++..+++|.++-. .+. +..+ -..--.|.+-+.....+.. .+..
T Consensus 6 ~~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~~~~~~~~~~y~~fl~pGll~~~~~~~~~~---~~~~ 82 (257)
T PRK15066 6 YWIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGSRIGEMGGFSYMQFIVPGLIMMSVITNSYS---NVAS 82 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 46778899999998865543 2233455555666667766521 111 0110 1111224433332222211 1122
Q ss_pred hhhhhh--hHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 044602 489 VFPFEK--IYLVKERKADMYRLSVYYVCSTLCDMVAHVFYPTIFMVIVYFMAGFKRTVPCFFLTLFAILLVAITSQGAGE 566 (674)
Q Consensus 489 ~f~~er--~v~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~m~gl~~~~~~F~~f~~~~~l~~~~~~s~~~ 566 (674)
.+..+| ....|=+.. --++..+.+++++...-..++..++...+.+...|.+.. ....++...++...+....|.
T Consensus 83 ~i~~~~~~~~~~~l~vt-p~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~--~~~~~l~~~ll~~~~f~~~gl 159 (257)
T PRK15066 83 SFFSAKFQRNIEELLVS-PVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH--HWGIVLLTVLLTAILFSLGGL 159 (257)
T ss_pred HHHHHHHhhhHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh--HHHHHHHHHHHHHHHHHHHHH
Confidence 222332 111111122 347788999999988777666666555555544466543 233333333333443444588
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHhhcccC--CChhhhHhhHhhcHHHHHHHHhhcc-cCCCCCCCCCCccccCCCCc
Q 044602 567 LFGAAVLSIKRAGMIASLILMLFLLTGGYYVQ--HIPKFMQWLKYLSFLYYGFRLLLKP-RGCRNLQSSPSFDTVNLSGG 643 (674)
Q Consensus 567 ~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Ya~eal~~n-~gc~~~~~~~~~~~~~~~~~ 643 (674)
+++.+.++.+....+..+++.+++..+|.+.| ++|+|++|+.++||+.|..|++=.. .| .+....
T Consensus 160 ~~a~~~~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~~l~~i~~~nPlt~~v~~~R~~~~g------------~~~~~~ 227 (257)
T PRK15066 160 INAVFAKSFDDISIIPTFVLTPLTYLGGVFYSISLLPPFWQGVSKLNPIVYMVNAFRYGFLG------------ISDVPL 227 (257)
T ss_pred HHHHHHccHHHHHHHHHHHHHHHHHHcchhccHHhChHHHHHHHHHCcHHHHHHHHHHHHcC------------CCCccH
Confidence 88888999888888999999999999999888 8999999999999999999987532 00 011234
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 044602 644 LQEVWVLLGMALAYRLCAYFCLRKRIN 670 (674)
Q Consensus 644 ~~~~~il~~~~~~~~~l~~~~L~~~~~ 670 (674)
|.++++++++.+++..++....|++.+
T Consensus 228 ~~~l~~l~~~~~v~~~la~~~~~r~~~ 254 (257)
T PRK15066 228 WLAFAVLLVFIVVLYLLAWYLLERGRG 254 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 788899999999888888888877654
No 451
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.04 E-value=6.7e-10 Score=136.12 Aligned_cols=79 Identities=20% Similarity=0.235 Sum_probs=69.0
Q ss_pred ccCccCHHHHHHHHHHHHHhh--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhc
Q 044602 230 FIKGISGGERKRTSIGYEILV--------DPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMF 301 (674)
Q Consensus 230 ~~~~LSgGerqRv~iA~aL~~--------~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~ 301 (674)
.+++|||||+++++||++|+. +|++||+||||++||+.+...+++.|..+.+.|+||++|||... ...++.
T Consensus 946 ~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~-l~~~i~ 1024 (1047)
T PRK10246 946 DTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEA-MKERIP 1024 (1047)
T ss_pred CcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHH-HHHhcc
Confidence 456899999999999999996 89999999999999999999999999999888999999999743 345566
Q ss_pred CEEEEEeC
Q 044602 302 DKLLLISE 309 (674)
Q Consensus 302 D~v~~L~~ 309 (674)
.+|.|-..
T Consensus 1025 ~qi~V~k~ 1032 (1047)
T PRK10246 1025 VQIKVKKI 1032 (1047)
T ss_pred ceEEEEEC
Confidence 66777654
No 452
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.02 E-value=1.1e-09 Score=104.06 Aligned_cols=64 Identities=25% Similarity=0.297 Sum_probs=49.2
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchH
Q 044602 233 GISGGERKRTSIGYEILVDPSLLLLDEPTS----------GLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSR 296 (674)
Q Consensus 233 ~LSgGerqRv~iA~aL~~~P~illLDEPTs----------gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~ 296 (674)
..+.++.++...+++...+|+++++||+++ +.|......+.+++....+.+.|+|+++|.+...
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 67 DPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred CCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 345666778888999999999999999994 4555556666666666655699999999987653
No 453
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.01 E-value=5.7e-09 Score=124.79 Aligned_cols=78 Identities=23% Similarity=0.295 Sum_probs=64.8
Q ss_pred hhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCcEEEEEecCCchHH--------HhhcCEEEEEeCCEEEEecChh
Q 044602 249 LVDPSLLLLDEPTSGL-DSTSANKLIQVLQKVAKAGRTVITTIHQPSSRM--------FHMFDKLLLISEGYPVYYGKAR 319 (674)
Q Consensus 249 ~~~P~illLDEPTsgL-D~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i--------~~~~D~v~~L~~G~iv~~G~~~ 319 (674)
..+|+++++|||+.+| |+..+..+.+.++++++.|.++|++||++.+.. .+.||++++|.+|++...|+.
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~- 728 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTR- 728 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchH-
Confidence 5799999999999999 799999999999999888999999999986531 368999999999998776643
Q ss_pred HHHHHHHhCCC
Q 044602 320 ESMEYFSSLGF 330 (674)
Q Consensus 320 ~~~~~f~~~g~ 330 (674)
++++..|+
T Consensus 729 ---~~~~~~gl 736 (818)
T PRK13830 729 ---EFYERIGF 736 (818)
T ss_pred ---HHHHHcCC
Confidence 34454453
No 454
>PRK01156 chromosome segregation protein; Provisional
Probab=98.96 E-value=1.9e-09 Score=130.91 Aligned_cols=77 Identities=27% Similarity=0.384 Sum_probs=66.7
Q ss_pred ccCccCHHHHHHHHH------HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-C-C-cEEEEEecCCchHHHhh
Q 044602 230 FIKGISGGERKRTSI------GYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK-A-G-RTVITTIHQPSSRMFHM 300 (674)
Q Consensus 230 ~~~~LSgGerqRv~i------A~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~-~-g-~tvi~~~H~~~~~i~~~ 300 (674)
.+..||||||+|++| |++++.+|++++|||||++||+.....+.+.++...+ . | .|+|++||++. ....
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~--~~~~ 875 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRE--LLSV 875 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchH--HHHh
Confidence 456899999999975 5899999999999999999999999999999986443 3 3 48999999975 4678
Q ss_pred cCEEEEEe
Q 044602 301 FDKLLLIS 308 (674)
Q Consensus 301 ~D~v~~L~ 308 (674)
||+++.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99999997
No 455
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.95 E-value=3.5e-09 Score=105.73 Aligned_cols=57 Identities=21% Similarity=0.389 Sum_probs=43.1
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEe
Q 044602 243 SIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLIS 308 (674)
Q Consensus 243 ~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 308 (674)
+++++|..+|+++++|||. |.++...++ +.+..|..++.++|.++. ....||++.+.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l----~~a~~G~~v~~t~Ha~~~--~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLAL----TAAETGHLVMSTLHTNSA--AKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHHH----HHHHcCCEEEEEecCCcH--HHHHhHHHhhc
Confidence 4778999999999999996 665443333 344579999999999764 46789887664
No 456
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.91 E-value=4.2e-09 Score=115.84 Aligned_cols=156 Identities=15% Similarity=0.118 Sum_probs=108.6
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETL 188 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l 188 (674)
..+++++ +.+.+||.++|+|+||+|||||++.|+|... +..|.|.+.|+.. .+|.|.+
T Consensus 144 iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~-~~~gvI~~iGerg--------------------~ev~e~~ 201 (432)
T PRK06793 144 IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAK-ADINVISLVGERG--------------------REVKDFI 201 (432)
T ss_pred CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCC-CCeEEEEeCCCCc--------------------ccHHHHH
Confidence 3578875 9999999999999999999999999998764 4467666555431 3666655
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHh-------hCCCEEEEeCCC
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEIL-------VDPSLLLLDEPT 261 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~-------~~P~illLDEPT 261 (674)
.... ..-|+.+. ..+ ....+-|.|+|+|++.+.+.+ .++-++++||||
T Consensus 202 ~~~l---------------------~~~gl~~t--vvv--~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslT 256 (432)
T PRK06793 202 RKEL---------------------GEEGMRKS--VVV--VATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVT 256 (432)
T ss_pred HHHh---------------------hhccccee--EEE--EECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchH
Confidence 4211 11111110 011 123478999999999998887 789999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecCh
Q 044602 262 SGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKA 318 (674)
Q Consensus 262 sgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 318 (674)
+..|+. +++-..+.+....|.+..+.+|. + ++++|.-..++|.|...++.
T Consensus 257 r~a~A~--reisl~~~e~p~~G~~~~~~s~l-~----~L~ERag~~~~GSiT~~~tv 306 (432)
T PRK06793 257 RFADAR--RSVDIAVKELPIGGKTLLMESYM-K----KLLERSGKTQKGSITGIYTV 306 (432)
T ss_pred HHHHHH--HHHHHHhcCCCCCCeeeeeeccc-h----hHHHHhccCCCcceEEEEEE
Confidence 999996 55555555555458888888884 2 33455555678888766654
No 457
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.90 E-value=7.2e-10 Score=121.65 Aligned_cols=53 Identities=19% Similarity=0.215 Sum_probs=45.8
Q ss_pred cccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCC
Q 044602 108 YKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN 162 (674)
Q Consensus 108 ~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~ 162 (674)
-+++|++||+++++||+++|+|||||||||||+ +|+..++..|+|.++|+++.
T Consensus 18 l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~ 70 (504)
T TIGR03238 18 LERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSF 70 (504)
T ss_pred HHHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECC
Confidence 357999999999999999999999999999999 66665543348999999875
No 458
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.88 E-value=2e-08 Score=102.78 Aligned_cols=161 Identities=16% Similarity=0.178 Sum_probs=96.7
Q ss_pred ceeee-EEEEeCCeEEEEEcCCCCcHHHHHHHHHc-CCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 044602 111 ILKGI-TGSICPGEILALMGPSGSGKTTLLKIVGG-RLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETL 188 (674)
Q Consensus 111 iL~~v-s~~i~~Ge~~ailG~sGsGKSTLl~~L~G-~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l 188 (674)
-|+.+ .+-+++|.++.|.|++|+|||||...++- .... . +.+.|+..+. +..+-+
T Consensus 13 ~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~--g---------------~~~~y~~~e~------~~~~~~ 69 (234)
T PRK06067 13 ELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQ--G---------------KKVYVITTEN------TSKSYL 69 (234)
T ss_pred HHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhC--C---------------CEEEEEEcCC------CHHHHH
Confidence 35554 56799999999999999999999988752 1111 1 2344554421 333322
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhh--CCCEEEEeCCCCC---
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILV--DPSLLLLDEPTSG--- 263 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~--~P~illLDEPTsg--- 263 (674)
.-..... ..- ++.+. -|.....+..+. .....|.++++.+.....++. +|+++++||||+.
T Consensus 70 ~~~~~~g----~~~-------~~~~~-~g~l~i~~~~~~--~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~ 135 (234)
T PRK06067 70 KQMESVK----IDI-------SDFFL-WGYLRIFPLNTE--GFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATY 135 (234)
T ss_pred HHHHHCC----CCh-------hHHHh-CCCceEEecccc--ccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhc
Confidence 2111110 000 00100 010111111111 112357788999999999998 9999999999965
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEecCCch------HHHhhcCEEEEEe
Q 044602 264 LDSTSANKLIQVLQKVAKAGRTVITTIHQPSS------RMFHMFDKLLLIS 308 (674)
Q Consensus 264 LD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~------~i~~~~D~v~~L~ 308 (674)
.|......+++.++.++++|.|+++++|+... .+..++|-++.|+
T Consensus 136 ~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~ 186 (234)
T PRK06067 136 AEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLR 186 (234)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEE
Confidence 44555556666677777779999999998643 1456677777776
No 459
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.88 E-value=2.4e-09 Score=133.35 Aligned_cols=76 Identities=21% Similarity=0.373 Sum_probs=67.2
Q ss_pred ccCccCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEE
Q 044602 230 FIKGISGGERKRTSIGYEIL----VDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLL 305 (674)
Q Consensus 230 ~~~~LSgGerqRv~iA~aL~----~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 305 (674)
.+..||||||||++||++++ .+|+++||||||++||+.+...+.+.|+++++ +.++|++||++.. ...||+++
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~~--~~~~d~~~ 1162 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKGT--MEVADQLY 1162 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChhH--HHHhhhHe
Confidence 45689999999999999984 67799999999999999999999999999875 5899999999764 57899997
Q ss_pred EEe
Q 044602 306 LIS 308 (674)
Q Consensus 306 ~L~ 308 (674)
.+.
T Consensus 1163 ~~~ 1165 (1179)
T TIGR02168 1163 GVT 1165 (1179)
T ss_pred eee
Confidence 664
No 460
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.81 E-value=2.6e-08 Score=102.33 Aligned_cols=136 Identities=22% Similarity=0.407 Sum_probs=86.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECC-EeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCC
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYND-IPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNM 200 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g-~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~ 200 (674)
|++..|+||+|+|||||.--++--. .+|.=..++ .... -..++-|+.=++
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~v---a~G~~~~g~~~~~~--~~~~Vlyi~~Ed------------------------ 51 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAM---ALGKNLFGGGLKVT--EPGRVVYLSAED------------------------ 51 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHH---hcCccccCCccccC--CCceEEEEECCC------------------------
Confidence 6788999999999999998876221 122211111 1110 123455554221
Q ss_pred CHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHH----------------HHhhCCCEEEEeCCCC--
Q 044602 201 NRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGY----------------EILVDPSLLLLDEPTS-- 262 (674)
Q Consensus 201 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~----------------aL~~~P~illLDEPTs-- 262 (674)
+..+..++++.+.+.+++.+..+... ..+|+.|++.+++ ....+|+++++| |++
T Consensus 52 ~~~~i~~Rl~~i~~~~~~~~~~~rl~-------~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~ 123 (239)
T cd01125 52 PREEIHRRLEAILQHLEPDDAGDRLF-------IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSF 123 (239)
T ss_pred CHHHHHHHHHHHHhhcCCcCcccceE-------EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHh
Confidence 22334456666666666544333321 2245556555443 335799999999 765
Q ss_pred ----CCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCc
Q 044602 263 ----GLDSTSANKLIQVLQKVAKA-GRTVITTIHQPS 294 (674)
Q Consensus 263 ----gLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~ 294 (674)
.+|+.....+++.|++++++ |.|||+++|...
T Consensus 124 ~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 124 HGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 47999999999999998865 899999999863
No 461
>PRK02224 chromosome segregation protein; Provisional
Probab=98.77 E-value=1.3e-08 Score=123.54 Aligned_cols=78 Identities=28% Similarity=0.443 Sum_probs=67.4
Q ss_pred cCccCHHHHH------HHHHHHHHhhC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCc-EEEEEecCCchHH
Q 044602 231 IKGISGGERK------RTSIGYEILVD-----P-SLLLLDEPTSGLDSTSANKLIQVLQKVAKAGR-TVITTIHQPSSRM 297 (674)
Q Consensus 231 ~~~LSgGerq------Rv~iA~aL~~~-----P-~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~-tvi~~~H~~~~~i 297 (674)
+..||||||+ |+++|++++.+ | +++++||||++||+.....+.+.|+.+.+.|. +||++||++..
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~-- 856 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDEL-- 856 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHH--
Confidence 4689999999 89999998864 3 67999999999999999999999999976664 89999999753
Q ss_pred HhhcCEEEEEeCC
Q 044602 298 FHMFDKLLLISEG 310 (674)
Q Consensus 298 ~~~~D~v~~L~~G 310 (674)
...||+++.|.+.
T Consensus 857 ~~~ad~~~~~~~~ 869 (880)
T PRK02224 857 VGAADDLVRVEKD 869 (880)
T ss_pred HHhcCeeEEeecC
Confidence 5779999999743
No 462
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.77 E-value=9.7e-09 Score=127.99 Aligned_cols=76 Identities=17% Similarity=0.336 Sum_probs=68.1
Q ss_pred cCccCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEE
Q 044602 231 IKGISGGERKRTSIGYEILV----DPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLL 306 (674)
Q Consensus 231 ~~~LSgGerqRv~iA~aL~~----~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~ 306 (674)
+..||||||++++||++++. +|++++||||+++||+.....+.+.|+++++ +.++|++||++. +...||+++.
T Consensus 1072 ~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~~--~~~~~d~~~~ 1148 (1164)
T TIGR02169 1072 LEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRSP--MIEYADRAIG 1148 (1164)
T ss_pred chhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcHH--HHHhcceeEe
Confidence 56899999999999999985 6799999999999999999999999999865 578999999974 5789999988
Q ss_pred EeC
Q 044602 307 ISE 309 (674)
Q Consensus 307 L~~ 309 (674)
+..
T Consensus 1149 ~~~ 1151 (1164)
T TIGR02169 1149 VTM 1151 (1164)
T ss_pred EEE
Confidence 763
No 463
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.77 E-value=2.3e-07 Score=84.67 Aligned_cols=118 Identities=29% Similarity=0.304 Sum_probs=77.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCC
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNM 200 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~ 200 (674)
++..+.|.||+|+||||+++.|+..+.....+-+.++........ .....
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~------------- 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEV-----------------LDQLL------------- 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccC-----------------HHHHH-------------
Confidence 367899999999999999999998764321134555443321100 00000
Q ss_pred CHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH------
Q 044602 201 NRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQ------ 274 (674)
Q Consensus 201 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~------ 274 (674)
.. .... ......+++..+..++++--.+|.++++||+..-.+.........
T Consensus 51 -------------~~---~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~ 107 (148)
T smart00382 51 -------------LI---IVGG-------KKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRL 107 (148)
T ss_pred -------------hh---hhhc-------cCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHH
Confidence 00 0000 112577888888888888888899999999999999998887765
Q ss_pred HHHHHHhCCcEEEEEec
Q 044602 275 VLQKVAKAGRTVITTIH 291 (674)
Q Consensus 275 ~L~~l~~~g~tvi~~~H 291 (674)
........+..+|+++|
T Consensus 108 ~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 108 LLLLKSEKNLTVILTTN 124 (148)
T ss_pred HHHHHhcCCCEEEEEeC
Confidence 22222335788999988
No 464
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.77 E-value=2.1e-08 Score=111.91 Aligned_cols=151 Identities=22% Similarity=0.255 Sum_probs=92.7
Q ss_pred cceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHH
Q 044602 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLV 189 (674)
Q Consensus 110 ~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~ 189 (674)
.++++.+..+++|++++++||||+||||++..|++++... .|. +++++|.+|. ...++.|+|.
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~-~G~-------------~kV~LI~~Dt---~RigA~EQLr 306 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMR-HGA-------------SKVALLTTDS---YRIGGHEQLR 306 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHh-cCC-------------CeEEEEeCCc---cchhHHHHHH
Confidence 3567778788899999999999999999999999865221 221 3588898886 3468999999
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHH-HHHHHHHHhhCC-----CEEEEeCCCCC
Q 044602 190 FAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERK-RTSIGYEILVDP-----SLLLLDEPTSG 263 (674)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq-Rv~iA~aL~~~P-----~illLDEPTsg 263 (674)
+.+.... ++........+...+..+|.+.....|- +...+++. .+.-..+++.++ .+|+||.++.+
T Consensus 307 ~~AeilG---Vpv~~~~~~~Dl~~aL~~L~d~d~VLID-----TaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~ 378 (484)
T PRK06995 307 IYGKILG---VPVHAVKDAADLRLALSELRNKHIVLID-----TIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG 378 (484)
T ss_pred HHHHHhC---CCeeccCCchhHHHHHHhccCCCeEEeC-----CCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH
Confidence 8765431 1111111223334445566655444432 32222322 234444555554 68999999887
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEec
Q 044602 264 LDSTSANKLIQVLQKVAKAGRTVITTIH 291 (674)
Q Consensus 264 LD~~~~~~i~~~L~~l~~~g~tvi~~~H 291 (674)
..+.+.++.....+.+-++.|+
T Consensus 379 ------~~l~~i~~~f~~~~~~g~IlTK 400 (484)
T PRK06995 379 ------DTLNEVVQAYRGPGLAGCILTK 400 (484)
T ss_pred ------HHHHHHHHHhccCCCCEEEEeC
Confidence 3344555555444555444554
No 465
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=98.73 E-value=2.1e-06 Score=88.68 Aligned_cols=167 Identities=18% Similarity=0.261 Sum_probs=121.4
Q ss_pred hhhHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Q 044602 493 EKIYLVKERKADMYRLSVYYVCSTLCDMVAHVFYPTIFMVIVYFMAGFKRTVPCFFLTLFAILLVAITSQGAGELFG-AA 571 (674)
Q Consensus 493 er~v~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~m~gl~~~~~~F~~f~~~~~l~~~~~~s~~~~i~-a~ 571 (674)
++..+.|=..+...+ ..+++++.+.......+...+...++.+..|. .....+..+..+..+......++|.+++ ..
T Consensus 116 ~~g~~~~~~~sp~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~ 193 (286)
T COG0842 116 EFGTLERLLVSPVSR-LFILLGKIVPYLVVASLIAGLVLLVIAFLLGV-PFLGSLLLLLLLLLLLLLATVALGLLLSTFA 193 (286)
T ss_pred hhCcHHHHHhCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444433 45677777777666666666666666666663 3344566666666777777888888666 36
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhhcccC--CChhhhHhhHhhcHHHHHHHHhhcccCCCCCCCCCCccccCCCCchHHHHH
Q 044602 572 VLSIKRAGMIASLILMLFLLTGGYYVQ--HIPKFMQWLKYLSFLYYGFRLLLKPRGCRNLQSSPSFDTVNLSGGLQEVWV 649 (674)
Q Consensus 572 ~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Ya~eal~~n~gc~~~~~~~~~~~~~~~~~~~~~~i 649 (674)
.++.+.+..++.++..++..++|.+.| .+|.|++|+.+++|.+|+.+++-.... ... ..+..|.++++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~l~g~~~p~~~~p~~~~~i~~~~P~t~~~~~~~~~~~----~~~------~~~~~~~~~~~ 263 (286)
T COG0842 194 KSQLQCASAVGNLLILPLGFLSGVFFPLELLPAWLQGISYINPLTYAIDALRYVYL----GGW------RNDGIWISLLI 263 (286)
T ss_pred hhHHHHHHHHHHHHHHHHHHHccccCchhhhHHHHHHHHHHccHHHHHHHHHHHHh----CCC------chhhHHHHHHH
Confidence 677888888988999999999999999 899999999999999999999875410 000 11226889999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 044602 650 LLGMALAYRLCAYFCLRKRINK 671 (674)
Q Consensus 650 l~~~~~~~~~l~~~~L~~~~~~ 671 (674)
++++.+++.+++...+|++.+.
T Consensus 264 l~~~~~v~~~~~~~~~~~~~~~ 285 (286)
T COG0842 264 LLLFAVVFLLLGLLLLRRRRKL 285 (286)
T ss_pred HHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999887654
No 466
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.69 E-value=9.7e-08 Score=103.41 Aligned_cols=124 Identities=22% Similarity=0.376 Sum_probs=77.4
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCC
Q 044602 119 ICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPG 198 (674)
Q Consensus 119 i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~ 198 (674)
.+++.++.|.||+||||||+++.|.+.+..+..|.|...+.++........+.+.|
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q------------------------ 174 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQ------------------------ 174 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEc------------------------
Confidence 45788999999999999999999997654333566655433321100000000100
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 044602 199 NMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQK 278 (674)
Q Consensus 199 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~ 278 (674)
..+|. ...+ =.-+++++|-.+|+++++||+. |+++....++
T Consensus 175 -------------------------~evg~---~~~~----~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~---- 215 (343)
T TIGR01420 175 -------------------------REVGL---DTLS----FANALRAALREDPDVILIGEMR---DLETVELALT---- 215 (343)
T ss_pred -------------------------cccCC---CCcC----HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHH----
Confidence 00110 0011 1123567888999999999997 8888865444
Q ss_pred HHhCCcEEEEEecCCchHHHhhcCEEEEE
Q 044602 279 VAKAGRTVITTIHQPSSRMFHMFDKLLLI 307 (674)
Q Consensus 279 l~~~g~tvi~~~H~~~~~i~~~~D~v~~L 307 (674)
.+..|.+|+.++|-.+. ....+|++-|
T Consensus 216 aa~tGh~v~~T~Ha~~~--~~~~~Rl~~~ 242 (343)
T TIGR01420 216 AAETGHLVFGTLHTNSA--AQTIERIIDV 242 (343)
T ss_pred HHHcCCcEEEEEcCCCH--HHHHHHHHHh
Confidence 34569999999999764 4566777654
No 467
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.63 E-value=3.4e-07 Score=110.15 Aligned_cols=52 Identities=23% Similarity=0.249 Sum_probs=48.2
Q ss_pred HHHHHhhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCcEEEEEecCCch
Q 044602 244 IGYEILVDPSLLLLDEPTSGL-DSTSANKLIQVLQKVAKAGRTVITTIHQPSS 295 (674)
Q Consensus 244 iA~aL~~~P~illLDEPTsgL-D~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 295 (674)
|++++..+|+++++|||+.+| |+..+..+.+.++.+++.|.+++++||++.+
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d 732 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSD 732 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 677888999999999999999 7999999999999998889999999999865
No 468
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.62 E-value=2.6e-09 Score=120.84 Aligned_cols=166 Identities=17% Similarity=0.156 Sum_probs=101.4
Q ss_pred ceeee-EEEEeCCeEEEEEcCCCCcHHHHHHHH--HcCCCCCCccEEEECCEeCChhcc---ccEEEEccCCCCCCCCCH
Q 044602 111 ILKGI-TGSICPGEILALMGPSGSGKTTLLKIV--GGRLTDDVKGNITYNDIPYNPALK---RRIGFVTQDDVLLPQLTV 184 (674)
Q Consensus 111 iL~~v-s~~i~~Ge~~ailG~sGsGKSTLl~~L--~G~~~~~~~G~I~~~g~~~~~~~~---~~igyv~Q~~~l~~~lTV 184 (674)
-|+.+ .+=+.+|..+.|.||+|||||||..-. .|.... -+.-+++...+-.++++ +..|+-.|+..--.
T Consensus 9 gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~-ge~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~g---- 83 (484)
T TIGR02655 9 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHF-DEPGVFVTFEESPQDIIKNARSFGWDLQKLVDEG---- 83 (484)
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhC-CCCEEEEEEecCHHHHHHHHHHcCCCHHHHhhcC----
Confidence 35664 567999999999999999999998866 343211 14456665543322222 23454443211000
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHH--HHHhhCCCEEEEeCCCC
Q 044602 185 EETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIG--YEILVDPSLLLLDEPTS 262 (674)
Q Consensus 185 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA--~aL~~~P~illLDEPTs 262 (674)
++.+ .. .... ...+.+++.+++.+..+... ..+|+|++|||.|+ .+|..+|+..
T Consensus 84 --~l~~---~~---~~~~----~~~~~~~~~~~l~~~l~~i~-----~~ls~g~~qRVvIDSl~aL~~~~~~~------- 139 (484)
T TIGR02655 84 --KLFI---LD---ASPD----PEGQDVVGGFDLSALIERIN-----YAIRKYKAKRVSIDSVTAVFQQYDAV------- 139 (484)
T ss_pred --ceEE---Ee---cCch----hccccccccCCHHHHHHHHH-----HHHHHhCCcEEEEeehhHhhhhcCch-------
Confidence 0000 00 0000 00112334445544444433 47999999999999 6666665543
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchH--------HHhhcCEEEEEe
Q 044602 263 GLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSR--------MFHMFDKLLLIS 308 (674)
Q Consensus 263 gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~--------i~~~~D~v~~L~ 308 (674)
...+..+.+.++.+++.|.|+|+++|+.... ...++|.|+.|+
T Consensus 140 ---~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 140 ---SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred ---HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 4677888999999988899999999986421 145789999987
No 469
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=98.59 E-value=1.8e-06 Score=82.52 Aligned_cols=128 Identities=9% Similarity=-0.020 Sum_probs=92.9
Q ss_pred hhhhhhHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCHH--HHHHHHHHHHHHHHHHHHHHHH
Q 044602 490 FPFEKIYLVKERKADMYRLSVYYVCSTLCDMVAHVFYPTIFMVIVYFMAGFKRTVP--CFFLTLFAILLVAITSQGAGEL 567 (674)
Q Consensus 490 f~~er~v~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~m~gl~~~~~--~F~~f~~~~~l~~~~~~s~~~~ 567 (674)
.-.|+..+.|-+..-. +++.|+++|++...-..+++.++..++.+++ |.+.... ..+.++++..+.......++..
T Consensus 14 ~dr~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~~-g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~~ 91 (152)
T TIGR01248 14 IDREIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALAL-GFRFRNGVAAALLFLLIPSIFGIAFAALVMA 91 (152)
T ss_pred HHHHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888777766 7889999999999999999888777777544 8877632 2223333334444455556666
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHhhcccC--CChhhhHhhHhhcHHHHHHHHh
Q 044602 568 FGAAVLSIKRAGMIASLILMLFLLTGGYYVQ--HIPKFMQWLKYLSFLYYGFRLL 620 (674)
Q Consensus 568 i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Ya~eal 620 (674)
++...++.+..+ ...++..++.+.+|.+.| ++|+|++|+.+++|++|+.+++
T Consensus 92 ~a~~~~~~~~~~-~~~~v~~pl~flsg~~~P~~~mP~wlq~ia~~~Plt~~~~~~ 145 (152)
T TIGR01248 92 MALRKEGRFAME-ALELAQAAAAFLNPGATPIKLFPDWAQPLIAHQPISPAIEAC 145 (152)
T ss_pred HHHHcCCHHHHH-HHHHHHHHHHHHhhhhcCHHhCcHHHHHHHhhCCccHHHHHH
Confidence 655556655444 346667777788888888 9999999999999999999986
No 470
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.56 E-value=2.1e-08 Score=102.21 Aligned_cols=47 Identities=28% Similarity=0.285 Sum_probs=33.7
Q ss_pred ceeee-EEEEeCCeEEEEEcCCCCcHHHHHHHHH--cCCCCCCccEEEECCE
Q 044602 111 ILKGI-TGSICPGEILALMGPSGSGKTTLLKIVG--GRLTDDVKGNITYNDI 159 (674)
Q Consensus 111 iL~~v-s~~i~~Ge~~ailG~sGsGKSTLl~~L~--G~~~~~~~G~I~~~g~ 159 (674)
-|+++ .+-+++|++++|.||+|+|||||...++ +.. . -++.+++...
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~-~-g~~~~~is~e 57 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLR-D-GDPVIYVTTE 57 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHh-c-CCeEEEEEcc
Confidence 35553 5679999999999999999999988655 322 2 2445666553
No 471
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.55 E-value=1.1e-07 Score=103.71 Aligned_cols=59 Identities=25% Similarity=0.330 Sum_probs=54.8
Q ss_pred ccCHHHHHHHHHHHHHhh---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q 044602 233 GISGGERKRTSIGYEILV---------DPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPS 294 (674)
Q Consensus 233 ~LSgGerqRv~iA~aL~~---------~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 294 (674)
.+|.||+|++.||..|+. +|+||+||||+++||+..+..+++.|++. |.++++++|++.
T Consensus 275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~ 342 (365)
T TIGR00611 275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLD 342 (365)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChh
Confidence 589999999999999999 99999999999999999999999999753 779999999864
No 472
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.53 E-value=2e-07 Score=92.10 Aligned_cols=84 Identities=21% Similarity=0.133 Sum_probs=62.4
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCC-hhccccEEEEccCC--CCCCCCCHHHH
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN-PALKRRIGFVTQDD--VLLPQLTVEET 187 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~-~~~~~~igyv~Q~~--~l~~~lTV~e~ 187 (674)
..+=+.+.+++|+.++|+||||||||||+++|+|.++ +..|.|.+.+..-. ...+..++++.|.+ ...+..|+.+.
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~-~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIP-PDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADL 92 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC-CCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHH
Confidence 4455566789999999999999999999999999874 56899999774321 12234567766553 45677899999
Q ss_pred HHHHHhhc
Q 044602 188 LVFAAFLR 195 (674)
Q Consensus 188 l~~~~~~~ 195 (674)
+....+..
T Consensus 93 l~~~lR~~ 100 (186)
T cd01130 93 LRSALRMR 100 (186)
T ss_pred HHHHhccC
Confidence 88776543
No 473
>PRK14079 recF recombination protein F; Provisional
Probab=98.52 E-value=1.8e-07 Score=101.60 Aligned_cols=77 Identities=17% Similarity=0.197 Sum_probs=63.0
Q ss_pred ccCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCE
Q 044602 233 GISGGERKRTSIGYEIL---------VDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDK 303 (674)
Q Consensus 233 ~LSgGerqRv~iA~aL~---------~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 303 (674)
-+|+||+|++++|..|+ .+|++++||||+++||...+..+.+.|.+.. .++|.+++. ...+|+
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~---q~~it~t~~-----~~~~~~ 334 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP---QAIVAGTEA-----PPGAAL 334 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC---cEEEEcCCC-----CCCCce
Confidence 48999999999999999 8999999999999999999999998886532 344444443 346899
Q ss_pred EEEEeCCEEEEecC
Q 044602 304 LLLISEGYPVYYGK 317 (674)
Q Consensus 304 v~~L~~G~iv~~G~ 317 (674)
++.+++|++.-..|
T Consensus 335 ~~~~~~~~~~~~~~ 348 (349)
T PRK14079 335 TLRIEAGVFTPEAP 348 (349)
T ss_pred EEEEeccEecCCCC
Confidence 99999998754443
No 474
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.50 E-value=1.2e-07 Score=104.58 Aligned_cols=85 Identities=24% Similarity=0.242 Sum_probs=66.7
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCC--ccEEEECCEeCCh----------hccccEEEEccCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDV--KGNITYNDIPYNP----------ALKRRIGFVTQDD 176 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~--~G~I~~~g~~~~~----------~~~~~igyv~Q~~ 176 (674)
..+++++ +++.+||.++|+|+||+|||||+++|+|...+.. -|.|-.+|.++.+ ..|..+++++|+.
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~ 221 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADE 221 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCC
Confidence 5699999 9999999999999999999999999999764331 1444445544431 1244799999999
Q ss_pred CCCCCCCHHHHHHHHHhh
Q 044602 177 VLLPQLTVEETLVFAAFL 194 (674)
Q Consensus 177 ~l~~~lTV~e~l~~~~~~ 194 (674)
..+..+++.+++.+.+..
T Consensus 222 s~~~rl~a~e~a~~iAEy 239 (434)
T PRK07196 222 SPLMRIKATELCHAIATY 239 (434)
T ss_pred ChhhhHHHHHHHHHHHHH
Confidence 999999999998876643
No 475
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.49 E-value=6.6e-07 Score=99.40 Aligned_cols=174 Identities=20% Similarity=0.242 Sum_probs=108.0
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh------------hccccEEEEccCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP------------ALKRRIGFVTQDD 176 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~------------~~~~~igyv~Q~~ 176 (674)
..+++++ +.+.+||.++|+|+||+|||||+++|+|... +..|.+...|..-++ .+++.+-++.+.+
T Consensus 151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~-~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d 228 (440)
T TIGR01026 151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTE-ADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSD 228 (440)
T ss_pred eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCC-CCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCC
Confidence 5689999 9999999999999999999999999998764 446777666554321 1233344444433
Q ss_pred CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCH-HHHHHHHHHHHHhhCCCEE
Q 044602 177 VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISG-GERKRTSIGYEILVDPSLL 255 (674)
Q Consensus 177 ~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg-GerqRv~iA~aL~~~P~il 255 (674)
. ++.+-..-+ .... .+.|.+...|- |-.+= ..+++- -|-+| .|+ +
T Consensus 229 ~-----~p~~r~~~~-----------~~a~-t~AE~frd~G~----~Vll~---~DslTr~A~A~R-Eis---------l 274 (440)
T TIGR01026 229 Q-----SPLLRLKGA-----------YVAT-AIAEYFRDQGK----DVLLL---MDSVTRFAMAQR-EIG---------L 274 (440)
T ss_pred C-----CHHHHHHHH-----------HHHH-HHHHHHHHCCC----CEEEE---EeChHHHHHHHH-HHH---------H
Confidence 2 222211100 0001 11222222231 11110 012221 11222 111 3
Q ss_pred EEeCC--CCCCCHHHHHHHHHHHHHHHhCCc-------EEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHH
Q 044602 256 LLDEP--TSGLDSTSANKLIQVLQKVAKAGR-------TVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 256 lLDEP--TsgLD~~~~~~i~~~L~~l~~~g~-------tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
.+.|| +.|+|+.....+-+++.+....+. ||++.+||.. ..++|++.-+.+|+++..++..+.
T Consensus 275 ~~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~---dpi~d~~~~i~dG~ivLsr~la~~ 346 (440)
T TIGR01026 275 AAGEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMN---EPIADSVRGILDGHIVLSRALAQR 346 (440)
T ss_pred hcCCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCC---cchhhhhccccceEEEEecchhhC
Confidence 35675 459999999999999999876667 8888899975 356899999999999999877653
No 476
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.45 E-value=5.9e-07 Score=109.32 Aligned_cols=78 Identities=31% Similarity=0.433 Sum_probs=69.2
Q ss_pred ccCccCHHHHHHHHHHHHHh------hC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhc
Q 044602 230 FIKGISGGERKRTSIGYEIL------VD--PSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMF 301 (674)
Q Consensus 230 ~~~~LSgGerqRv~iA~aL~------~~--P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~ 301 (674)
.+..|||||+=.++||.+|+ .+ =+.+||||||..||+.+...+++.|..+...+++|++|||++ ++...+
T Consensus 812 ~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~e--el~e~~ 889 (908)
T COG0419 812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVE--ELKERA 889 (908)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChH--HHHHhC
Confidence 56789999999988887765 35 599999999999999999999999999988899999999995 467899
Q ss_pred CEEEEEeC
Q 044602 302 DKLLLISE 309 (674)
Q Consensus 302 D~v~~L~~ 309 (674)
|.++.++.
T Consensus 890 ~~~i~V~k 897 (908)
T COG0419 890 DVRIRVKK 897 (908)
T ss_pred CeEEEEEe
Confidence 99999874
No 477
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.44 E-value=4.1e-07 Score=109.21 Aligned_cols=137 Identities=20% Similarity=0.240 Sum_probs=82.7
Q ss_pred cceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHH
Q 044602 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLV 189 (674)
Q Consensus 110 ~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~ 189 (674)
.|-+|+++. +.+.++.|.|||++||||+||.++-..--..-| .|||-+..- +++.+.|
T Consensus 596 ~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G-----------------~~VPa~~a~---i~~~d~I- 653 (854)
T PRK05399 596 FVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLAQIG-----------------SFVPAESAR---IGIVDRI- 653 (854)
T ss_pred eEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcC-----------------CceeccceE---ecccCee-
Confidence 355667776 667899999999999999999987321000011 123222110 1111111
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhh--CCCEEEEeCC---CCCC
Q 044602 190 FAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILV--DPSLLLLDEP---TSGL 264 (674)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~--~P~illLDEP---TsgL 264 (674)
..++|-. |. ...++|-=+.....++..|-. +++++++||| |+.+
T Consensus 654 -----------------------~triga~---d~-----i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~ 702 (854)
T PRK05399 654 -----------------------FTRIGAS---DD-----LASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTY 702 (854)
T ss_pred -----------------------eeccCcc---cc-----cccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcc
Confidence 1111111 11 113577666666666666554 8999999999 9999
Q ss_pred CHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCE
Q 044602 265 DSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDK 303 (674)
Q Consensus 265 D~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~ 303 (674)
|..+ .....++.+.+. |.+++++||.. ++.+++++
T Consensus 703 dg~a--ia~aile~l~~~~~~~~l~aTH~~--el~~l~~~ 738 (854)
T PRK05399 703 DGLS--IAWAVAEYLHDKIGAKTLFATHYH--ELTELEEK 738 (854)
T ss_pred hhHH--HHHHHHHHHHhcCCceEEEEechH--HHHHHhhh
Confidence 9444 345566666665 58999999993 56777775
No 478
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.43 E-value=2.1e-07 Score=92.74 Aligned_cols=112 Identities=20% Similarity=0.248 Sum_probs=65.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhh-cCCCCCCH
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFL-RLPGNMNR 202 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~-~~~~~~~~ 202 (674)
+++|.||||||||||.+.|++.+ . .|. +.++.+|+... .++..+........ ..+...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l-~--~~~---------------~~v~~~D~~~~-~~~~~~~~~~~~~~~~~~~~~-- 59 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL-G--NPK---------------VVIISQDSYYK-DLSHEELEERKNNNYDHPDAF-- 59 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh-C--CCC---------------eEEEEeccccc-ccccccHHHhccCCCCCCCcc--
Confidence 47999999999999999999876 1 222 33444444322 22333322211100 011111
Q ss_pred HHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 044602 203 QQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDS 266 (674)
Q Consensus 203 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~ 266 (674)
..+...+.++.+...+..+.++ ...|.|++++..+ .+.+|+++++|+|..+.++
T Consensus 60 --~~~~~~~~l~~l~~~~~~~~p~-----~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 60 --DFDLLISHLQDLKNGKSVEIPV-----YDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred --cHHHHHHHHHHHHCCCCEeccc-----cccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 1223445666665443333332 3678888776555 5688999999999999886
No 479
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.38 E-value=1.4e-06 Score=108.52 Aligned_cols=162 Identities=15% Similarity=0.240 Sum_probs=91.5
Q ss_pred eEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhh
Q 044602 115 ITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFL 194 (674)
Q Consensus 115 vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~ 194 (674)
+++..+++++++|+|++|+|||||++.+.+.+....+|.+++++..+.... .. +-.++... .+...
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~-~~--~~~~~~~~-------~~~~~---- 265 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSM-EI--YSSANPDD-------YNMKL---- 265 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccch-hh--cccccccc-------cchhH----
Confidence 456778899999999999999999999987765556899988764322100 00 00010000 00000
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q 044602 195 RLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQ 274 (674)
Q Consensus 195 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~ 274 (674)
....+.+.++++..++. + ..+ ++.|+|+ ..++-+|+||+- |.. ..++
T Consensus 266 --------~l~~~~l~~il~~~~~~------~-----~~~-~~~~~~L------~~krvLLVLDdv----~~~---~~l~ 312 (1153)
T PLN03210 266 --------HLQRAFLSEILDKKDIK------I-----YHL-GAMEERL------KHRKVLIFIDDL----DDQ---DVLD 312 (1153)
T ss_pred --------HHHHHHHHHHhCCCCcc------c-----CCH-HHHHHHH------hCCeEEEEEeCC----CCH---HHHH
Confidence 01112233444433331 1 122 5666663 355567788984 433 3344
Q ss_pred HHHHHH---hCCcEEEEEecCCchHHHhh-cCEEEEEeCCEEEEecChhHHHHHHHhCCC
Q 044602 275 VLQKVA---KAGRTVITTIHQPSSRMFHM-FDKLLLISEGYPVYYGKARESMEYFSSLGF 330 (674)
Q Consensus 275 ~L~~l~---~~g~tvi~~~H~~~~~i~~~-~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~ 330 (674)
.|+... ..|.+||+|||+... +... +|+++-+.. =+.+++.+.|...-|
T Consensus 313 ~L~~~~~~~~~GsrIIiTTrd~~v-l~~~~~~~~~~v~~------l~~~ea~~LF~~~Af 365 (1153)
T PLN03210 313 ALAGQTQWFGSGSRIIVITKDKHF-LRAHGIDHIYEVCL------PSNELALEMFCRSAF 365 (1153)
T ss_pred HHHhhCccCCCCcEEEEEeCcHHH-HHhcCCCeEEEecC------CCHHHHHHHHHHHhc
Confidence 444432 248899999999643 2222 577665531 145678888876544
No 480
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.33 E-value=1.4e-06 Score=96.34 Aligned_cols=67 Identities=22% Similarity=0.331 Sum_probs=53.7
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECC---EeCCh--------hccccEEEEccCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYND---IPYNP--------ALKRRIGFVTQDDV 177 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g---~~~~~--------~~~~~igyv~Q~~~ 177 (674)
..+++.++ .+.+||.++|+||||+|||||+++|++... +..|.|.+.| .++.. ..++.+++|+|.+.
T Consensus 153 i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~-pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 153 VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADA-FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCC-CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCC
Confidence 56888886 999999999999999999999999998764 4579888864 44421 12457999999764
No 481
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.31 E-value=4e-07 Score=89.25 Aligned_cols=66 Identities=24% Similarity=0.325 Sum_probs=47.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--hcc-ccEEEEccCCCCCCCCCHHHHHHHH
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--ALK-RRIGFVTQDDVLLPQLTVEETLVFA 191 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--~~~-~~igyv~Q~~~l~~~lTV~e~l~~~ 191 (674)
+||+++|+|+||||||||+++|+|++.+ +.++|.++.. ..+ ...|+.+|+...++..++.+++.+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~-----~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 70 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA-----KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYS 70 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC-----EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHH
Confidence 6999999999999999999999997632 5788877643 122 2456777775555555666666543
No 482
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.26 E-value=1.3e-06 Score=109.75 Aligned_cols=60 Identities=27% Similarity=0.396 Sum_probs=53.1
Q ss_pred cCccCHHHHHHHH----HHHH--------HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCC
Q 044602 231 IKGISGGERKRTS----IGYE--------ILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQP 293 (674)
Q Consensus 231 ~~~LSgGerqRv~----iA~a--------L~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 293 (674)
..+||||||||++ +|++ +..+|++++|||||+|||+.+...+++.++++ |.++|+++|..
T Consensus 1245 ~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1245 FGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSERE 1316 (1353)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccch
Confidence 4689999999996 5645 55899999999999999999999999999887 78999999873
No 483
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.21 E-value=3.5e-05 Score=92.71 Aligned_cols=49 Identities=24% Similarity=0.260 Sum_probs=44.2
Q ss_pred HHhhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCcEEEEEecCCch
Q 044602 247 EILVDPSLLLLDEPTSGLD-STSANKLIQVLQKVAKAGRTVITTIHQPSS 295 (674)
Q Consensus 247 aL~~~P~illLDEPTsgLD-~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 295 (674)
.+..+|.++++|||...|| +..+..+.+.++.+++.|..++++||++.+
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d 687 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVED 687 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 3557899999999999999 888999999999998889999999999854
No 484
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=98.20 E-value=3.4e-05 Score=80.60 Aligned_cols=37 Identities=30% Similarity=0.424 Sum_probs=33.1
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~ 145 (674)
-+.|+++.+-+.+|+++.|.|++|+|||||+..++..
T Consensus 17 ~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~ 53 (271)
T cd01122 17 FPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALD 53 (271)
T ss_pred cceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999899999999999999999999999988743
No 485
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=98.20 E-value=4.7e-05 Score=91.66 Aligned_cols=48 Identities=29% Similarity=0.287 Sum_probs=42.9
Q ss_pred HhhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCcEEEEEecCCch
Q 044602 248 ILVDPSLLLLDEPTSGLD-STSANKLIQVLQKVAKAGRTVITTIHQPSS 295 (674)
Q Consensus 248 L~~~P~illLDEPTsgLD-~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 295 (674)
+-.+|+++++|||+.+|| +..+..+.+.++.+++.|.+++++||++.+
T Consensus 632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d 680 (811)
T PRK13873 632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLAD 680 (811)
T ss_pred hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHH
Confidence 345899999999999999 788999999999998889999999999753
No 486
>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.19 E-value=0.001 Score=68.61 Aligned_cols=152 Identities=14% Similarity=0.160 Sum_probs=96.1
Q ss_pred HHHHHhcCCCC--------chHHHHHHHHHHHHHHHHHHHH---HHhhhhhhccCC---CCCHHHHHHHHHHHHHHHHHH
Q 044602 496 YLVKERKADMY--------RLSVYYVCSTLCDMVAHVFYPT---IFMVIVYFMAGF---KRTVPCFFLTLFAILLVAITS 561 (674)
Q Consensus 496 v~~rE~~~g~Y--------~~~ay~la~~l~~lp~~~~~~~---if~~i~Y~m~gl---~~~~~~F~~f~~~~~l~~~~~ 561 (674)
.+.+||++|.. +...++++|.+.-.-..++..+ ++....++. |. ..+...++..++..++...+.
T Consensus 72 ~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~ 150 (240)
T TIGR03518 72 SFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQL-GNPVGNLDIGSTFGSYIGLLLLGSVY 150 (240)
T ss_pred HHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCccccccHHHHHHHHHHHHHHHHHH
Confidence 34566666654 4577899999988755443322 122222222 22 224556665556666777788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcc-cCCC--hhhhHhhHhhcHHHHHHHHhhcccCCCCCCCCCCcccc
Q 044602 562 QGAGELFGAAVLSIKRAGMIASLILMLFLLTGGYY-VQHI--PKFMQWLKYLSFLYYGFRLLLKPRGCRNLQSSPSFDTV 638 (674)
Q Consensus 562 ~s~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~-i~~i--p~~~~Wl~yiSp~~Ya~eal~~n~gc~~~~~~~~~~~~ 638 (674)
.++|.++|+++++...|..++..+... ++.|+- +.++ |++.+|+.|+||..|-.+.. . | .
T Consensus 151 ~aig~~iSsl~~~q~~a~~~~~~~~~~--l~~~~~~l~~~~~~~~~~~l~~~sp~~~~~~~~-~--g--------~---- 213 (240)
T TIGR03518 151 TAIGLFASSLTENQIVAFIIAVFLCFL--FYFGFDGLASLLWGGSAYTISELGLSYHYESIS-R--G--------V---- 213 (240)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHH--HHHHHHHHhhhcchhHHHHHHHcCHHHHHHHHH-c--C--------c----
Confidence 899999999999988886655433222 222321 2344 89999999999987754433 1 1 0
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHh
Q 044602 639 NLSGGLQEVWVLLGMALAYRLCAYFCLRKR 668 (674)
Q Consensus 639 ~~~~~~~~~~il~~~~~~~~~l~~~~L~~~ 668 (674)
-.+.|+...+.+.+.+..++...+++|
T Consensus 214 ---i~~~~~v~~~~~~~~~l~l~~~~~~~r 240 (240)
T TIGR03518 214 ---IDSRDVIYFLSITVLFLALTKLQLKSR 240 (240)
T ss_pred ---ccHhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 015778888888888888888877664
No 487
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.19 E-value=3.7e-06 Score=93.13 Aligned_cols=109 Identities=16% Similarity=0.184 Sum_probs=70.9
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECC---EeCCh----hcc---ccEEEE-----c
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYND---IPYNP----ALK---RRIGFV-----T 173 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g---~~~~~----~~~---~~igyv-----~ 173 (674)
..+++++ +.+.+||.++|+|+||+|||||+++|+|..+....|.|.+.| .++.+ .++ .+.+++ +
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~ 230 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSD 230 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCC
Confidence 4589988 999999999999999999999999999876333346777755 44421 122 235555 8
Q ss_pred cCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 044602 174 QDDV--LLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE 219 (674)
Q Consensus 174 Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 219 (674)
|++. +.+.+ +...+.-..+.+........+...++.+++++++|.
T Consensus 231 q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~ 277 (442)
T PRK06315 231 QSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLA 277 (442)
T ss_pred CCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcC
Confidence 8763 33333 444443332222111123356677888999999884
No 488
>PRK01889 GTPase RsgA; Reviewed
Probab=98.11 E-value=5.1e-06 Score=90.46 Aligned_cols=106 Identities=18% Similarity=0.310 Sum_probs=70.6
Q ss_pred eeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCC-hhccccEEEEccCCCCCCCCCHHHHHHH
Q 044602 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN-PALKRRIGFVTQDDVLLPQLTVEETLVF 190 (674)
Q Consensus 112 L~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~-~~~~~~igyv~Q~~~l~~~lTV~e~l~~ 190 (674)
++.+.-.+++|++++|+|+||+|||||+|.|+|... +..|+|.+++.... ...++.+++++|+..++.+ ....++.+
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~-~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~Dt-pG~~~~~l 262 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEV-QKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDT-PGMRELQL 262 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcc-cceeeEEECCCCCcchhhhccEEEecCCCeecCC-Cchhhhcc
Confidence 445555678999999999999999999999999774 46899999875432 2345679999999888765 55555544
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccc
Q 044602 191 AAFLRLPGNMNRQQKYARVQMILKELGLERCRHT 224 (674)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 224 (674)
... ...-........++.+.+...+|.+.
T Consensus 263 ~~~-----~~~l~~~f~~~~~~~~~c~f~~c~h~ 291 (356)
T PRK01889 263 WDA-----EDGVEETFSDIEELAAQCRFRDCAHE 291 (356)
T ss_pred cCc-----hhhHHHhHHHHHHHHccCCCCCCCCC
Confidence 310 00011122334555565666666554
No 489
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.07 E-value=1.7e-05 Score=72.99 Aligned_cols=55 Identities=24% Similarity=0.312 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCcEEEEEecCCc
Q 044602 239 RKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK-----AGRTVITTIHQPS 294 (674)
Q Consensus 239 rqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~-----~g~tvi~~~H~~~ 294 (674)
++..........++.++++||.-.. +......+.+.+..... .+.++|+++++..
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 4445555666778999999998765 56667778888877653 4778888888643
No 490
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.07 E-value=4.3e-06 Score=67.10 Aligned_cols=37 Identities=38% Similarity=0.622 Sum_probs=29.7
Q ss_pred eeeeEEEEeC-CeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 112 LKGITGSICP-GEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 112 L~~vs~~i~~-Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
+++-++++.+ |++++|.||||||||||++++.=.+.+
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~ 49 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYG 49 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4556777775 569999999999999999999755544
No 491
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.05 E-value=5.1e-05 Score=74.74 Aligned_cols=67 Identities=21% Similarity=0.217 Sum_probs=44.2
Q ss_pred HHHHHHHHcCCCccccccccCCccCccCHHHHHHHH--HHHHHhh-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 044602 208 RVQMILKELGLERCRHTRVGGGFIKGISGGERKRTS--IGYEILV-DPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA 282 (674)
Q Consensus 208 ~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~--iA~aL~~-~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~ 282 (674)
.+.+.++..+++-. .+++ ....+|+||+|++. +++.+-. +++++ |||++|.....++.+.|.++.++
T Consensus 126 ~i~~~l~~~~~~~i---iv~n-K~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 126 QMIEWLKEYGIPVL---IVLT-KADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHHcCCcEE---EEEE-CcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence 34455565554311 1221 22358999999987 5555433 34443 99999999999999999887764
No 492
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=98.05 E-value=1.2e-05 Score=90.06 Aligned_cols=62 Identities=18% Similarity=0.248 Sum_probs=42.9
Q ss_pred hCCCEEEEeCCCCCC----C-----HHHHHHHHHHHHHHHh-CCcEEEEEecCCch-------HHHhhcCEEEEEeCCE
Q 044602 250 VDPSLLLLDEPTSGL----D-----STSANKLIQVLQKVAK-AGRTVITTIHQPSS-------RMFHMFDKLLLISEGY 311 (674)
Q Consensus 250 ~~P~illLDEPTsgL----D-----~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~-------~i~~~~D~v~~L~~G~ 311 (674)
.+|+++++|.-++=. + ....++++..|.++++ .|.|+++++|...+ .+..++|.|+.|+.++
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 479999999876521 1 1224455666777765 59999999997432 1467899999998654
No 493
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.04 E-value=1.1e-05 Score=70.28 Aligned_cols=48 Identities=31% Similarity=0.537 Sum_probs=36.6
Q ss_pred cCccCHHHHH-HHHHHHHH------hh------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 044602 231 IKGISGGERK-RTSIGYEI------LV------DPSLLLLDEPTSGLDSTSANKLIQVLQK 278 (674)
Q Consensus 231 ~~~LSgGerq-Rv~iA~aL------~~------~P~illLDEPTsgLD~~~~~~i~~~L~~ 278 (674)
..++|||||| .+.++.++ -. .|++++||||+++||+.....+++.|++
T Consensus 30 ~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 30 FGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp GGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 3489999994 44444332 22 3799999999999999999999999874
No 494
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.03 E-value=2e-06 Score=86.38 Aligned_cols=28 Identities=39% Similarity=0.495 Sum_probs=25.8
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
++|++++|.||||||||||++.|++.+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999999998763
No 495
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.02 E-value=6.3e-06 Score=84.17 Aligned_cols=74 Identities=18% Similarity=0.244 Sum_probs=49.8
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccE----EEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhh
Q 044602 119 ICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGN----ITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFL 194 (674)
Q Consensus 119 i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~----I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~ 194 (674)
-.+..+++|.||||||||||.+.|++.+.+ ..|. |.+++.......++..|++++.+. ...+++.+.+.+...+
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~-~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~~-~~~~d~~~~~~~l~~l 107 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQ-DGELPAIQVPMDGFHLDNAVLDAHGLRPRKGA-PETFDVAGLAALLRRL 107 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhh-ccCCceEEEecccccCCHHHHHhcccccccCC-CCCCCHHHHHHHHHHH
Confidence 345789999999999999999999998854 4677 555554333333445677766432 3455676666554433
No 496
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.01 E-value=3.5e-06 Score=84.10 Aligned_cols=56 Identities=25% Similarity=0.288 Sum_probs=43.2
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQD 175 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~ 175 (674)
++|++++|+|+||||||||.+.|++++.+...|.+.++|.++...+...++|.+|+
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~~~~~~~~~ 77 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCSDLGFSDAD 77 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhhcCCcCccc
Confidence 67899999999999999999999987754445789999987654333345555554
No 497
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.99 E-value=1.6e-05 Score=92.45 Aligned_cols=110 Identities=24% Similarity=0.331 Sum_probs=70.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCCCCC-------CccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhh
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGRLTDD-------VKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFL 194 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~~~~~-------~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~ 194 (674)
.+.++|+||||+|||||++++.+..... ..+-|.+||..+....+. + ++-.++.
T Consensus 175 ~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~----------------i-~~~llg~-- 235 (615)
T TIGR02903 175 PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE----------------V-TNPLLGS-- 235 (615)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH----------------H-hHHhcCC--
Confidence 4579999999999999999998765221 123356665443110000 0 1111110
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q 044602 195 RLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQ 274 (674)
Q Consensus 195 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~ 274 (674)
. .+...+.+.+.++..|+.+..+..+ ..+||| +|+||| +..||+..+..+.+
T Consensus 236 -----~-~~~~~~~a~~~l~~~gl~~~~~g~v-----~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~ 287 (615)
T TIGR02903 236 -----V-HDPIYQGARRDLAETGVPEPKTGLV-----TDAHGG----------------VLFIDE-IGELDPLLQNKLLK 287 (615)
T ss_pred -----c-cHHHHHHHHHHHHHcCCCchhcCch-----hhcCCC----------------eEEEec-cccCCHHHHHHHHH
Confidence 1 1111234555678888876665544 478888 999999 79999999999999
Q ss_pred HHHH
Q 044602 275 VLQK 278 (674)
Q Consensus 275 ~L~~ 278 (674)
.|++
T Consensus 288 ~Le~ 291 (615)
T TIGR02903 288 VLED 291 (615)
T ss_pred HHhh
Confidence 8865
No 498
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.99 E-value=6.9e-06 Score=81.09 Aligned_cols=37 Identities=35% Similarity=0.529 Sum_probs=30.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCC
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN 162 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~ 162 (674)
|++++|+||||||||||++.|++...+ .+.+++..+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~----~~~~~~~~~~ 38 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT----QLLVAHRYIT 38 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC----eEEEcCEECC
Confidence 789999999999999999999986532 5777776554
No 499
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=97.95 E-value=0.00022 Score=73.18 Aligned_cols=46 Identities=24% Similarity=0.341 Sum_probs=34.6
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHh-CCcEEEEEecCCc
Q 044602 249 LVDPSLLLLDEPTSGLDSTSANKLIQ-VLQKVAK-AGRTVITTIHQPS 294 (674)
Q Consensus 249 ~~~P~illLDEPTsgLD~~~~~~i~~-~L~~l~~-~g~tvi~~~H~~~ 294 (674)
+.+..++|+||.-.|=++.....+.. .++.+.+ .+..+|++||...
T Consensus 120 ~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~ 167 (235)
T PF00488_consen 120 ATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHE 167 (235)
T ss_dssp --TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GG
T ss_pred cccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccch
Confidence 45678999999999999999887755 4566776 4888999999964
No 500
>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.94 E-value=0.0029 Score=66.05 Aligned_cols=233 Identities=17% Similarity=0.185 Sum_probs=145.4
Q ss_pred HHHHHHHHHHHHHHHh-hcchh--HH---HHHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 044602 414 WWDQFHIISRRTFRER-WRDYF--DK---LRLVQALGVAVVLGLLWWKSQSTTEAQLRDQVGLIFYICIFWTSSSIFGAV 487 (674)
Q Consensus 414 ~~~Q~~~L~~R~~~~~-r~~~~--~~---~r~~~~i~~all~G~lf~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~~i 487 (674)
.++....|.+|+.+.+ ||... .+ --+++.++++++.|.++-+-+. +. -..--.|.+.+..... +...+.
T Consensus 16 ~~~li~~L~~~eik~Ryr~s~LG~~W~~l~P~~~~~~~~~vf~~l~~~~~~-~~-~~~l~~G~~~w~f~~~---~i~~~~ 90 (263)
T COG1682 16 YRRLIGALVKREIKTRYRRSVLGYLWSLLNPLLMILVYTLVFGALLRSPGL-NF-LAYLLAGLILWFFFSE---AISEGA 90 (263)
T ss_pred HHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCc-ch-HHHHHHHHHHHHHHHH---HHHhHH
Confidence 4567788899999985 55432 22 2456666777777777643211 11 2233334433322211 122335
Q ss_pred HhhhhhhhHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 044602 488 YVFPFEKIYLVKERKADMYRLSVYYVCSTLCDMVAHVFYPTIFMVIVYFMAGFKRTVPCFFLTLFAILLVAITSQGAGEL 567 (674)
Q Consensus 488 ~~f~~er~v~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~m~gl~~~~~~F~~f~~~~~l~~~~~~s~~~~ 567 (674)
..+.++..+++|-+ .+++.+.+++++.++--..+..++....+-+.-+.+ ...+..+...+.+..+.+.+++.+
T Consensus 91 ~s~~~n~~li~k~~----~p~~~~~~~~~~~~~~~~~i~~iiil~~~i~~~~~~--s~~~l~~~~~l~~l~l~~~g~~l~ 164 (263)
T COG1682 91 GSVVANAALIKKIN----FPPLILPVARTLSRLFNFLIHLIIILIFLIILGVEP--SWHWLLLLPALLLLILFSVGLGLI 164 (263)
T ss_pred HHhhhhHHHHhCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666665432 388899999999998776666655555555544443 345555666667777788888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHhhcccC--CChhhhHhhHhhcHHHHHHHHhhcc--cCCCCCCCCCCccccCCCCc
Q 044602 568 FGAAVLSIKRAGMIASLILMLFLLTGGYYVQ--HIPKFMQWLKYLSFLYYGFRLLLKP--RGCRNLQSSPSFDTVNLSGG 643 (674)
Q Consensus 568 i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Ya~eal~~n--~gc~~~~~~~~~~~~~~~~~ 643 (674)
+|.++.-..--..+.+.++-+++..+|.+=+ ++|+-++|+.++||+.+-.|..=.. .|- ...
T Consensus 165 ~a~l~v~fRD~~~i~~~v~~~~f~~sPIi~~~~~~p~~~~~~~~~NP~~~iie~~R~~~~~~~--------------~~~ 230 (263)
T COG1682 165 LASLGVRFRDLGQILGVVLQLLFFLSPIIYPVSNLPEQLRELVLLNPLTHIIESFRAPLLGGD--------------VPD 230 (263)
T ss_pred HHhHhhhcccHHHHHHHHHHHHHHhCceeeehhhccHHHHHHHHHCcHHHHHHHHHHHHhCCC--------------ccc
Confidence 8888766544455556666677777776555 8999999999999999999886544 110 113
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 044602 644 LQEVWVLLGMALAYRLCAYFCLRKRINK 671 (674)
Q Consensus 644 ~~~~~il~~~~~~~~~l~~~~L~~~~~~ 671 (674)
+.+.+..++..++..+++++..++-.++
T Consensus 231 ~~~~~~~~~~~li~l~vg~~~~~~~~~~ 258 (263)
T COG1682 231 LHLLVYILLLTLILLFVGLLLFRKFRKR 258 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455555566666666777766654443
Done!