Query 044602
Match_columns 674
No_of_seqs 563 out of 3658
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 08:14:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044602.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044602hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 2.9E-50 9.9E-55 432.1 29.4 222 68-322 23-252 (366)
2 3tif_A Uncharacterized ABC tra 100.0 8.7E-50 3E-54 406.9 28.1 221 70-321 2-232 (235)
3 3gfo_A Cobalt import ATP-bindi 100.0 1.5E-49 5.2E-54 413.6 29.5 219 69-323 7-233 (275)
4 2olj_A Amino acid ABC transpor 100.0 3.4E-49 1.2E-53 408.6 30.3 217 69-322 24-247 (263)
5 3rlf_A Maltose/maltodextrin im 100.0 3E-49 1E-53 426.6 31.0 218 69-323 3-223 (381)
6 1b0u_A Histidine permease; ABC 100.0 3.1E-49 1.1E-53 409.1 29.4 217 69-322 6-241 (262)
7 3fvq_A Fe(3+) IONS import ATP- 100.0 2.2E-49 7.5E-54 425.0 28.0 217 69-322 4-227 (359)
8 1vpl_A ABC transporter, ATP-bi 100.0 1.1E-48 3.6E-53 403.5 29.3 218 69-323 15-235 (256)
9 2pcj_A ABC transporter, lipopr 100.0 1.1E-48 3.8E-53 395.9 28.3 212 69-318 4-223 (224)
10 1z47_A CYSA, putative ABC-tran 100.0 1.4E-48 5E-53 418.7 29.5 219 68-322 13-234 (355)
11 1g6h_A High-affinity branched- 100.0 1.1E-48 3.7E-53 404.0 26.4 218 69-320 7-239 (257)
12 2yyz_A Sugar ABC transporter, 100.0 1.9E-48 6.5E-53 418.8 28.7 218 69-323 3-223 (359)
13 2it1_A 362AA long hypothetical 100.0 2.4E-48 8.2E-53 418.4 29.4 217 69-322 3-222 (362)
14 3nh6_A ATP-binding cassette SU 100.0 1E-48 3.5E-53 412.7 24.9 215 68-323 52-277 (306)
15 1g29_1 MALK, maltose transport 100.0 5.7E-48 2E-52 417.5 31.0 217 69-322 3-228 (372)
16 4g1u_C Hemin import ATP-bindin 100.0 2.1E-48 7.3E-53 403.5 26.4 216 68-322 10-236 (266)
17 1ji0_A ABC transporter; ATP bi 100.0 2.8E-48 9.7E-53 396.9 26.8 216 69-322 6-227 (240)
18 1oxx_K GLCV, glucose, ABC tran 100.0 2.8E-48 9.5E-53 417.4 27.8 217 69-322 3-229 (353)
19 1v43_A Sugar-binding transport 100.0 4E-48 1.4E-52 418.1 26.8 217 69-322 11-230 (372)
20 2onk_A Molybdate/tungstate ABC 100.0 1E-47 3.6E-52 392.5 25.1 199 111-322 14-215 (240)
21 3d31_A Sulfate/molybdate ABC t 100.0 1E-47 3.6E-52 411.7 25.5 199 111-322 15-216 (348)
22 2yz2_A Putative ABC transporte 100.0 2.5E-47 8.5E-52 395.8 26.1 222 69-323 2-227 (266)
23 2d2e_A SUFC protein; ABC-ATPas 100.0 3E-47 1E-51 391.7 24.0 219 69-320 3-230 (250)
24 2ihy_A ABC transporter, ATP-bi 100.0 3.1E-47 1.1E-51 397.3 22.8 220 68-321 20-250 (279)
25 2ff7_A Alpha-hemolysin translo 100.0 9.6E-47 3.3E-51 387.2 23.0 215 68-322 6-231 (247)
26 2zu0_C Probable ATP-dependent 100.0 4.3E-46 1.5E-50 386.6 28.0 229 69-330 20-260 (267)
27 2ixe_A Antigen peptide transpo 100.0 8.9E-47 3.1E-51 392.5 22.2 222 69-323 16-245 (271)
28 2nq2_C Hypothetical ABC transp 100.0 1.1E-45 3.8E-50 380.5 28.1 210 69-321 4-215 (253)
29 2qi9_C Vitamin B12 import ATP- 100.0 5.4E-46 1.8E-50 381.8 25.3 196 110-321 14-220 (249)
30 1mv5_A LMRA, multidrug resista 100.0 1.5E-46 5.1E-51 384.9 17.7 202 109-323 15-226 (243)
31 3qf4_A ABC transporter, ATP-bi 100.0 3.7E-46 1.3E-50 427.6 19.7 268 18-323 265-566 (587)
32 2ghi_A Transport protein; mult 100.0 2.8E-45 9.7E-50 379.0 24.0 215 69-323 17-242 (260)
33 4a82_A Cystic fibrosis transme 100.0 7E-46 2.4E-50 424.8 20.9 264 18-323 263-564 (578)
34 3b60_A Lipid A export ATP-bind 100.0 3E-45 1E-49 420.0 23.3 266 17-323 266-567 (582)
35 3b5x_A Lipid A export ATP-bind 100.0 3.7E-45 1.3E-49 419.3 23.3 268 17-323 266-567 (582)
36 2yl4_A ATP-binding cassette SU 100.0 7.7E-45 2.6E-49 417.7 24.6 269 18-322 264-569 (595)
37 4f4c_A Multidrug resistance pr 100.0 3.6E-45 1.2E-49 452.6 22.6 267 18-323 338-641 (1321)
38 2pjz_A Hypothetical protein ST 100.0 1.5E-44 5E-49 373.9 23.1 209 70-322 2-214 (263)
39 1sgw_A Putative ABC transporte 100.0 2.6E-45 8.9E-50 368.2 16.8 202 68-312 9-210 (214)
40 3qf4_B Uncharacterized ABC tra 100.0 1.9E-45 6.4E-50 422.8 16.6 263 18-323 279-578 (598)
41 4f4c_A Multidrug resistance pr 100.0 6.2E-45 2.1E-49 450.5 20.9 219 68-323 1075-1304(1321)
42 3gd7_A Fusion complex of cysti 100.0 1.1E-44 3.8E-49 393.5 18.8 215 68-323 18-242 (390)
43 2pze_A Cystic fibrosis transme 100.0 6.2E-44 2.1E-48 362.3 21.6 204 69-322 6-217 (229)
44 2cbz_A Multidrug resistance-as 100.0 8.1E-44 2.8E-48 363.2 21.9 211 69-323 3-217 (237)
45 3g5u_A MCG1178, multidrug resi 100.0 2.7E-42 9.1E-47 426.0 22.7 219 68-323 386-613 (1284)
46 3g5u_A MCG1178, multidrug resi 100.0 4.5E-41 1.5E-45 415.1 23.7 221 68-323 1029-1258(1284)
47 2bbs_A Cystic fibrosis transme 100.0 4.1E-41 1.4E-45 352.7 18.8 188 109-322 51-246 (290)
48 3bk7_A ABC transporter ATP-bin 100.0 4E-37 1.4E-41 352.5 22.2 190 111-323 371-563 (607)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 3.9E-37 1.3E-41 348.8 20.0 190 111-323 301-493 (538)
50 3ozx_A RNAse L inhibitor; ATP 100.0 3.5E-36 1.2E-40 340.4 21.4 191 111-322 283-476 (538)
51 3ux8_A Excinuclease ABC, A sub 100.0 1.2E-35 4.3E-40 345.7 17.3 206 109-322 31-297 (670)
52 3j16_B RLI1P; ribosome recycli 100.0 6.1E-35 2.1E-39 333.9 18.1 192 109-323 360-559 (608)
53 2iw3_A Elongation factor 3A; a 100.0 4.7E-34 1.6E-38 338.0 25.1 185 109-323 448-635 (986)
54 1yqt_A RNAse L inhibitor; ATP- 100.0 1.1E-34 3.9E-39 328.5 14.0 181 110-310 36-234 (538)
55 3bk7_A ABC transporter ATP-bin 100.0 1.3E-34 4.3E-39 331.8 14.3 180 110-310 106-304 (607)
56 2iw3_A Elongation factor 3A; a 100.0 2.4E-34 8.3E-39 340.4 14.4 208 68-317 670-981 (986)
57 3ux8_A Excinuclease ABC, A sub 100.0 1.6E-33 5.5E-38 327.9 18.5 196 109-322 335-639 (670)
58 3j16_B RLI1P; ribosome recycli 100.0 1.9E-32 6.6E-37 313.2 9.6 187 110-314 92-301 (608)
59 3ozx_A RNAse L inhibitor; ATP 100.0 3.5E-32 1.2E-36 307.7 9.9 173 119-312 22-215 (538)
60 3pih_A Uvrabc system protein A 100.0 1.2E-30 4.2E-35 308.6 22.9 198 109-322 597-901 (916)
61 2vf7_A UVRA2, excinuclease ABC 100.0 5.4E-31 1.8E-35 309.3 17.6 196 111-322 512-826 (842)
62 2r6f_A Excinuclease ABC subuni 100.0 8.3E-31 2.8E-35 308.1 17.0 197 110-322 638-941 (972)
63 2ygr_A Uvrabc system protein A 100.0 3.3E-30 1.1E-34 304.0 17.6 198 110-323 656-960 (993)
64 4aby_A DNA repair protein RECN 100.0 6.6E-29 2.2E-33 272.6 20.5 203 109-316 48-381 (415)
65 2npi_A Protein CLP1; CLP1-PCF1 100.0 1.1E-31 3.6E-36 298.1 -7.4 186 112-321 128-336 (460)
66 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 7.8E-26 2.7E-30 244.6 16.4 83 230-314 276-364 (365)
67 3b85_A Phosphate starvation-in 99.9 2.8E-29 9.7E-34 250.7 -13.0 141 107-294 11-159 (208)
68 1e69_A Chromosome segregation 99.9 1.5E-25 5.2E-30 238.3 14.0 199 113-321 16-311 (322)
69 4gp7_A Metallophosphoesterase; 99.9 1.2E-25 4.2E-30 217.2 3.5 143 114-295 1-161 (171)
70 2v9p_A Replication protein E1; 99.9 4.9E-28 1.7E-32 254.4 -16.0 157 109-327 113-270 (305)
71 1tq4_A IIGP1, interferon-induc 99.9 6.1E-27 2.1E-31 255.9 -10.2 170 109-304 36-247 (413)
72 1ye8_A Protein THEP1, hypothet 99.9 1.2E-24 4.1E-29 212.0 4.1 145 124-314 2-159 (178)
73 1znw_A Guanylate kinase, GMP k 99.9 3.2E-27 1.1E-31 235.1 -18.7 181 108-308 8-202 (207)
74 3b9q_A Chloroplast SRP recepto 99.9 5.2E-24 1.8E-28 224.3 1.2 173 112-312 90-284 (302)
75 2vf7_A UVRA2, excinuclease ABC 99.9 1.4E-21 4.7E-26 229.7 16.6 109 206-322 357-474 (842)
76 3sop_A Neuronal-specific septi 99.9 4.7E-24 1.6E-28 221.3 -7.1 146 124-293 4-150 (270)
77 2dpy_A FLII, flagellum-specifi 99.9 1.1E-23 3.6E-28 232.6 -4.9 177 108-321 144-342 (438)
78 2og2_A Putative signal recogni 99.9 5E-23 1.7E-27 221.2 0.4 172 113-312 148-341 (359)
79 1z6g_A Guanylate kinase; struc 99.8 1.9E-25 6.4E-30 224.6 -20.2 171 109-308 10-192 (218)
80 2o5v_A DNA replication and rep 99.8 6.3E-21 2.2E-25 205.1 13.0 86 228-321 259-354 (359)
81 2pt7_A CAG-ALFA; ATPase, prote 99.8 1.1E-22 3.9E-27 216.8 -0.7 131 110-311 159-291 (330)
82 3pih_A Uvrabc system protein A 99.8 5E-21 1.7E-25 226.7 11.9 160 140-322 386-559 (916)
83 3qkt_A DNA double-strand break 99.8 1.5E-20 5.2E-25 201.2 14.3 80 230-311 245-332 (339)
84 1cr0_A DNA primase/helicase; R 99.8 7.2E-22 2.5E-26 207.0 3.2 184 109-312 22-237 (296)
85 2jeo_A Uridine-cytidine kinase 99.8 4.2E-22 1.4E-26 203.3 -0.7 181 107-326 10-190 (245)
86 3aez_A Pantothenate kinase; tr 99.8 5.3E-24 1.8E-28 225.3 -15.6 128 114-266 81-209 (312)
87 4ad8_A DNA repair protein RECN 99.8 4E-20 1.4E-24 208.8 13.0 77 231-310 394-473 (517)
88 2r6f_A Excinuclease ABC subuni 99.8 6.3E-20 2.2E-24 216.0 13.3 136 179-322 449-599 (972)
89 1tf7_A KAIC; homohexamer, hexa 99.8 1.6E-22 5.4E-27 229.0 -11.7 169 108-311 24-211 (525)
90 1tf7_A KAIC; homohexamer, hexa 99.8 1.3E-19 4.3E-24 205.1 10.9 156 116-311 275-444 (525)
91 2o8b_B DNA mismatch repair pro 99.8 1.9E-20 6.7E-25 225.1 3.0 159 109-320 769-939 (1022)
92 2ygr_A Uvrabc system protein A 99.8 5.1E-19 1.8E-23 209.1 13.2 134 178-323 465-617 (993)
93 2obl_A ESCN; ATPase, hydrolase 99.8 1.2E-20 4.3E-25 202.2 -1.4 177 109-321 59-253 (347)
94 2ehv_A Hypothetical protein PH 99.8 2.5E-20 8.7E-25 189.0 0.7 162 117-308 25-206 (251)
95 3thx_A DNA mismatch repair pro 99.8 1.8E-19 6.3E-24 214.2 7.4 152 108-321 648-811 (934)
96 2eyu_A Twitching motility prot 99.8 6.7E-20 2.3E-24 189.1 2.9 133 110-309 15-147 (261)
97 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 2E-18 7E-23 162.7 10.7 82 229-312 53-142 (148)
98 4a74_A DNA repair and recombin 99.7 1.8E-19 6.1E-24 180.4 1.7 152 117-311 20-201 (231)
99 3asz_A Uridine kinase; cytidin 99.7 4.5E-21 1.5E-25 190.4 -12.0 146 119-294 3-162 (211)
100 3thx_B DNA mismatch repair pro 99.7 2.9E-18 9.8E-23 203.5 6.3 155 108-314 659-816 (918)
101 1ewq_A DNA mismatch repair pro 99.7 1.3E-18 4.5E-23 203.4 3.3 145 109-315 566-716 (765)
102 1rj9_A FTSY, signal recognitio 99.7 5.6E-19 1.9E-23 186.1 -0.2 148 121-294 101-259 (304)
103 3szr_A Interferon-induced GTP- 99.7 4E-20 1.4E-24 212.4 -9.9 166 125-325 48-239 (608)
104 2qnr_A Septin-2, protein NEDD5 99.7 8.2E-20 2.8E-24 192.3 -7.9 158 107-295 9-169 (301)
105 2i3b_A HCR-ntpase, human cance 99.7 8E-20 2.7E-24 179.5 -7.6 156 122-316 1-169 (189)
106 1pzn_A RAD51, DNA repair and r 99.7 8.7E-19 3E-23 188.2 -3.4 165 111-318 119-310 (349)
107 1wb9_A DNA mismatch repair pro 99.7 6.9E-18 2.4E-22 198.4 3.8 157 108-317 594-752 (800)
108 3jvv_A Twitching mobility prot 99.7 1.1E-17 3.9E-22 179.7 3.4 133 111-310 114-246 (356)
109 2w0m_A SSO2452; RECA, SSPF, un 99.7 1.1E-17 3.7E-22 167.2 2.0 168 109-311 9-193 (235)
110 1nlf_A Regulatory protein REPA 99.6 3.8E-16 1.3E-20 162.2 11.6 151 118-294 26-182 (279)
111 1pui_A ENGB, probable GTP-bind 99.6 2.4E-18 8.3E-23 169.7 -5.8 163 110-285 16-202 (210)
112 1s96_A Guanylate kinase, GMP k 99.6 1.7E-17 6E-22 166.6 -2.6 152 114-327 8-164 (219)
113 2qag_C Septin-7; cell cycle, c 99.6 1.2E-16 4.1E-21 175.0 -1.1 150 108-293 23-177 (418)
114 3kta_B Chromosome segregation 99.6 6.1E-15 2.1E-19 142.5 10.3 90 231-323 62-158 (173)
115 2bdt_A BH3686; alpha-beta prot 99.6 2.7E-19 9.1E-24 174.6 -21.2 170 122-322 2-183 (189)
116 2cvh_A DNA repair and recombin 99.5 6E-15 2.1E-19 146.4 8.6 154 110-310 7-185 (220)
117 1zp6_A Hypothetical protein AT 99.5 1.3E-17 4.3E-22 162.6 -12.0 152 118-290 5-158 (191)
118 2qag_B Septin-6, protein NEDD5 99.5 8.7E-16 3E-20 167.8 -0.0 174 108-292 27-218 (427)
119 1lw7_A Transcriptional regulat 99.5 3.3E-18 1.1E-22 184.8 -19.0 162 111-308 157-342 (365)
120 2ewv_A Twitching motility prot 99.5 1.3E-15 4.4E-20 164.9 1.2 132 110-308 126-257 (372)
121 2bbw_A Adenylate kinase 4, AK4 99.5 1.8E-17 6E-22 168.9 -13.2 153 121-283 26-200 (246)
122 1nij_A Hypothetical protein YJ 99.5 6.9E-18 2.3E-22 179.0 -18.9 162 122-302 4-197 (318)
123 2gza_A Type IV secretion syste 99.5 5.5E-15 1.9E-19 159.4 3.2 137 111-311 164-303 (361)
124 2rcn_A Probable GTPase ENGC; Y 99.5 1.4E-14 4.6E-19 155.3 5.5 123 111-248 205-328 (358)
125 2f1r_A Molybdopterin-guanine d 99.5 3.3E-16 1.1E-20 151.3 -8.6 137 123-284 3-164 (171)
126 2yhs_A FTSY, cell division pro 99.4 3.4E-15 1.1E-19 165.2 -3.0 153 112-292 283-448 (503)
127 1n0w_A DNA repair protein RAD5 99.4 1.4E-13 4.9E-18 138.5 8.9 146 117-310 19-209 (243)
128 3auy_A DNA double-strand break 99.4 4.2E-13 1.4E-17 145.1 12.3 76 230-308 277-359 (371)
129 1htw_A HI0065; nucleotide-bind 99.4 2.8E-15 9.5E-20 142.9 -4.5 79 107-190 18-97 (158)
130 2qm8_A GTPase/ATPase; G protei 99.4 4.6E-16 1.6E-20 166.2 -11.4 162 108-281 41-260 (337)
131 3e70_C DPA, signal recognition 99.4 3.1E-14 1E-18 151.3 1.6 143 119-293 126-279 (328)
132 1odf_A YGR205W, hypothetical 3 99.4 1.2E-14 4.1E-19 152.0 -2.3 130 120-268 29-169 (290)
133 1udx_A The GTP-binding protein 99.4 2.7E-14 9.3E-19 156.3 -2.6 169 112-303 147-318 (416)
134 2kjq_A DNAA-related protein; s 99.3 5E-13 1.7E-17 125.9 5.7 96 110-295 29-127 (149)
135 1w1w_A Structural maintenance 99.3 1.9E-12 6.4E-17 142.7 10.6 75 232-308 332-410 (430)
136 3ec2_A DNA replication protein 99.3 4.1E-13 1.4E-17 129.6 3.9 49 248-296 97-146 (180)
137 1sxj_E Activator 1 40 kDa subu 99.3 8.3E-13 2.8E-17 140.9 6.7 136 125-295 39-176 (354)
138 3lda_A DNA repair protein RAD5 99.3 7.1E-13 2.4E-17 144.4 5.9 146 117-311 173-364 (400)
139 2yv5_A YJEQ protein; hydrolase 99.3 6.9E-14 2.4E-18 147.1 -2.4 121 119-247 162-301 (302)
140 1p9r_A General secretion pathw 99.3 3.2E-15 1.1E-19 163.8 -13.2 142 99-256 146-314 (418)
141 3c8u_A Fructokinase; YP_612366 99.3 1.5E-14 5.1E-19 143.5 -9.3 165 119-326 19-184 (208)
142 2oap_1 GSPE-2, type II secreti 99.3 8.9E-15 3E-19 164.3 -14.4 177 109-301 247-457 (511)
143 1lvg_A Guanylate kinase, GMP k 99.3 7.1E-16 2.4E-20 152.2 -20.9 151 120-309 2-173 (198)
144 1ni3_A YCHF GTPase, YCHF GTP-b 99.2 1.5E-14 5.1E-19 157.0 -18.6 169 118-320 16-210 (392)
145 1in4_A RUVB, holliday junction 99.1 2.4E-13 8.2E-18 144.9 -9.8 179 107-325 29-223 (334)
146 1sq5_A Pantothenate kinase; P- 99.1 5.3E-13 1.8E-17 140.7 -7.6 86 109-195 48-156 (308)
147 1u0l_A Probable GTPase ENGC; p 99.1 3.2E-12 1.1E-16 134.3 -2.2 106 118-236 165-294 (301)
148 2x8a_A Nuclear valosin-contain 99.1 1.8E-14 6.3E-19 149.4 -20.0 129 107-262 31-164 (274)
149 1t9h_A YLOQ, probable GTPase E 99.1 6.7E-12 2.3E-16 131.9 -1.0 118 117-241 168-303 (307)
150 2dr3_A UPF0273 protein PH0284; 99.1 1.3E-11 4.3E-16 124.4 -1.0 60 250-309 127-196 (247)
151 1vma_A Cell division protein F 99.0 2.9E-10 1E-14 119.5 5.2 115 114-281 96-213 (306)
152 2r6a_A DNAB helicase, replicat 99.0 8.5E-10 2.9E-14 122.3 8.8 179 110-312 191-401 (454)
153 1ls1_A Signal recognition part 98.9 2.2E-09 7.4E-14 112.4 9.9 118 113-279 91-209 (295)
154 2zr9_A Protein RECA, recombina 98.9 1.5E-09 5.2E-14 116.2 8.8 148 117-317 56-237 (349)
155 2ius_A DNA translocase FTSK; n 98.9 1E-10 3.5E-15 130.7 -3.0 164 113-294 158-343 (512)
156 1oix_A RAS-related protein RAB 98.9 3.5E-10 1.2E-14 110.0 0.8 139 124-279 31-189 (191)
157 1iy2_A ATP-dependent metallopr 98.8 8E-13 2.7E-17 136.9 -19.5 124 108-254 61-190 (278)
158 2px0_A Flagellar biosynthesis 98.8 2.7E-09 9.2E-14 111.7 6.9 141 120-315 103-247 (296)
159 3k1j_A LON protease, ATP-depen 98.8 4E-11 1.4E-15 137.7 -7.7 161 107-278 45-227 (604)
160 3tr0_A Guanylate kinase, GMP k 98.8 1.7E-10 5.9E-15 113.0 -2.9 67 116-187 1-71 (205)
161 1ixz_A ATP-dependent metallopr 98.8 1.2E-12 4.2E-17 133.3 -19.2 127 109-260 38-170 (254)
162 3euj_A Chromosome partition pr 98.8 9.5E-10 3.2E-14 122.0 2.2 52 109-162 17-68 (483)
163 3lnc_A Guanylate kinase, GMP k 98.6 7.8E-10 2.7E-14 111.0 -5.6 38 109-146 14-52 (231)
164 3hr8_A Protein RECA; alpha and 98.5 4.6E-08 1.6E-12 104.7 5.5 69 117-186 56-126 (356)
165 2ce7_A Cell division protein F 98.5 1E-07 3.5E-12 105.9 7.8 113 110-294 39-165 (476)
166 1qhl_A Protein (cell division 98.5 3.1E-09 1.1E-13 106.9 -4.1 58 116-175 22-91 (227)
167 2f9l_A RAB11B, member RAS onco 98.5 2.1E-08 7.3E-13 97.7 1.5 37 242-280 130-166 (199)
168 1svm_A Large T antigen; AAA+ f 98.5 1.5E-10 5.3E-15 125.0 -15.4 144 109-262 156-312 (377)
169 4eun_A Thermoresistant glucoki 98.5 4.8E-09 1.6E-13 102.9 -3.6 64 111-179 18-84 (200)
170 2qtf_A Protein HFLX, GTP-bindi 98.5 1.2E-07 4.2E-12 102.0 6.6 151 120-281 176-353 (364)
171 3uie_A Adenylyl-sulfate kinase 98.3 8.8E-09 3E-13 101.0 -6.1 53 109-163 12-66 (200)
172 4a1f_A DNAB helicase, replicat 98.3 3.4E-07 1.2E-11 97.3 4.7 129 110-291 34-164 (338)
173 2xau_A PRE-mRNA-splicing facto 98.3 8.4E-07 2.9E-11 104.5 8.3 72 232-304 189-262 (773)
174 2j41_A Guanylate kinase; GMP, 98.2 3.4E-07 1.1E-11 89.4 2.7 32 117-148 1-32 (207)
175 4e22_A Cytidylate kinase; P-lo 98.2 9.8E-08 3.4E-12 97.3 -1.7 62 111-176 19-96 (252)
176 3nwj_A ATSK2; P loop, shikimat 98.2 1.2E-07 4.1E-12 96.7 -1.8 52 69-146 17-72 (250)
177 3kta_A Chromosome segregation 98.2 5.9E-07 2E-11 86.1 3.1 35 113-148 18-52 (182)
178 2dhr_A FTSH; AAA+ protein, hex 98.2 5.8E-09 2E-13 116.6 -12.7 129 109-262 53-187 (499)
179 3cr8_A Sulfate adenylyltranfer 98.2 5.2E-08 1.8E-12 110.1 -5.1 43 118-161 365-409 (552)
180 2e87_A Hypothetical protein PH 98.2 1.7E-06 5.8E-11 92.7 6.8 61 232-294 230-293 (357)
181 1zu4_A FTSY; GTPase, signal re 98.2 3.1E-07 1.1E-11 97.0 1.0 77 112-189 95-185 (320)
182 1kgd_A CASK, peripheral plasma 98.1 4.6E-07 1.6E-11 87.2 1.6 38 120-157 3-40 (180)
183 3t34_A Dynamin-related protein 98.1 7.1E-06 2.4E-10 87.8 10.8 158 109-291 24-212 (360)
184 3a00_A Guanylate kinase, GMP k 98.1 5.8E-07 2E-11 86.9 1.4 26 122-147 1-26 (186)
185 1jjv_A Dephospho-COA kinase; P 98.1 6E-07 2.1E-11 87.9 0.6 127 124-308 4-131 (206)
186 1fnn_A CDC6P, cell division co 98.0 1.5E-05 5E-10 85.2 11.0 44 250-294 124-170 (389)
187 3vaa_A Shikimate kinase, SK; s 98.0 1.9E-06 6.4E-11 84.2 3.5 38 109-146 12-49 (199)
188 2z4s_A Chromosomal replication 97.9 5.1E-06 1.8E-10 91.5 5.2 96 250-347 193-296 (440)
189 2dy1_A Elongation factor G; tr 97.9 3.3E-06 1.1E-10 97.8 3.7 130 116-294 3-137 (665)
190 3tau_A Guanylate kinase, GMP k 97.9 3.2E-06 1.1E-10 83.3 2.9 28 120-147 6-33 (208)
191 2vp4_A Deoxynucleoside kinase; 97.9 3.1E-06 1E-10 84.8 2.4 40 117-161 15-54 (230)
192 3bh0_A DNAB-like replicative h 97.9 8E-06 2.7E-10 85.9 5.6 132 110-292 56-190 (315)
193 1v5w_A DMC1, meiotic recombina 97.9 3.4E-05 1.2E-09 82.1 10.2 144 112-293 111-274 (343)
194 1ega_A Protein (GTP-binding pr 97.9 9.7E-06 3.3E-10 84.7 5.5 62 234-303 101-168 (301)
195 2z43_A DNA repair and recombin 97.8 7E-05 2.4E-09 79.0 11.7 143 112-292 96-257 (324)
196 3b9p_A CG5977-PA, isoform A; A 97.8 0.00011 3.6E-09 75.9 12.3 74 235-308 97-187 (297)
197 2qt1_A Nicotinamide riboside k 97.8 1.2E-05 4.3E-10 78.6 4.0 46 116-181 15-60 (207)
198 3ney_A 55 kDa erythrocyte memb 97.8 9.2E-06 3.1E-10 79.7 2.9 29 119-147 16-44 (197)
199 1knq_A Gluconate kinase; ALFA/ 97.7 7.8E-06 2.7E-10 77.7 2.0 37 120-161 6-42 (175)
200 3kl4_A SRP54, signal recogniti 97.7 7.3E-05 2.5E-09 81.8 9.2 125 121-292 96-223 (433)
201 2qby_A CDC6 homolog 1, cell di 97.7 6.8E-06 2.3E-10 87.4 0.5 27 120-146 43-69 (386)
202 1rz3_A Hypothetical protein rb 97.7 8.6E-06 2.9E-10 79.7 0.9 41 119-160 19-59 (201)
203 3tqc_A Pantothenate kinase; bi 97.6 2.7E-06 9.1E-11 89.8 -3.2 43 105-147 69-117 (321)
204 2pez_A Bifunctional 3'-phospho 97.5 7.3E-06 2.5E-10 78.3 -1.6 40 120-161 3-44 (179)
205 1cke_A CK, MSSA, protein (cyti 97.5 5.4E-06 1.8E-10 82.1 -2.8 55 122-176 5-74 (227)
206 2q6t_A DNAB replication FORK h 97.5 0.00043 1.5E-08 76.1 11.8 171 110-309 188-397 (444)
207 1lv7_A FTSH; alpha/beta domain 97.5 0.00033 1.1E-08 70.8 10.0 34 111-146 36-69 (257)
208 3llm_A ATP-dependent RNA helic 97.5 2.4E-05 8.3E-10 78.3 1.5 152 120-302 74-228 (235)
209 1kag_A SKI, shikimate kinase I 97.4 4.1E-05 1.4E-09 72.3 2.4 26 121-146 3-28 (173)
210 1f2t_A RAD50 ABC-ATPase; DNA d 97.4 6.8E-05 2.3E-09 69.9 3.9 30 113-143 15-44 (149)
211 2wjg_A FEOB, ferrous iron tran 97.4 4.6E-05 1.6E-09 72.5 2.0 22 124-145 9-30 (188)
212 3cf0_A Transitional endoplasmi 97.4 0.00019 6.4E-09 74.7 6.7 29 118-146 45-73 (301)
213 1ypw_A Transitional endoplasmi 97.4 9.8E-05 3.3E-09 87.3 4.8 30 117-146 233-262 (806)
214 3lxx_A GTPase IMAP family memb 97.4 0.0008 2.7E-08 67.1 10.8 43 250-292 111-155 (239)
215 2p67_A LAO/AO transport system 97.3 1.4E-05 4.7E-10 85.1 -3.1 52 108-160 42-93 (341)
216 1u94_A RECA protein, recombina 97.3 0.00068 2.3E-08 72.4 9.9 77 240-316 128-238 (356)
217 3bos_A Putative DNA replicatio 97.3 0.00015 5.1E-09 71.5 4.1 45 250-294 103-149 (242)
218 1w1w_A Structural maintenance 97.2 0.00012 4.1E-09 80.2 3.4 32 117-148 21-52 (430)
219 3m6a_A ATP-dependent protease 97.2 4.4E-05 1.5E-09 86.3 -0.6 50 109-160 96-145 (543)
220 1l8q_A Chromosomal replication 97.2 0.0006 2.1E-08 71.3 8.1 46 249-294 96-142 (324)
221 4eaq_A DTMP kinase, thymidylat 97.2 0.00011 3.7E-09 73.6 2.3 44 111-156 12-58 (229)
222 2b8t_A Thymidine kinase; deoxy 97.2 0.00059 2E-08 68.1 7.6 53 251-308 89-150 (223)
223 1mky_A Probable GTP-binding pr 97.1 0.00029 1E-08 77.4 5.3 67 123-189 181-262 (439)
224 3ice_A Transcription terminati 97.1 4.2E-05 1.4E-09 81.9 -1.6 33 114-146 166-198 (422)
225 2w58_A DNAI, primosome compone 97.1 0.0007 2.4E-08 65.5 7.2 24 123-146 55-78 (202)
226 2gj8_A MNME, tRNA modification 97.1 0.00046 1.6E-08 65.1 5.5 27 120-146 2-28 (172)
227 2www_A Methylmalonic aciduria 97.1 0.00012 4.2E-09 78.0 1.5 41 120-161 72-112 (349)
228 3qks_A DNA double-strand break 97.0 0.00031 1.1E-08 68.9 3.9 31 113-144 15-45 (203)
229 3bgw_A DNAB-like replicative h 97.0 0.00053 1.8E-08 75.5 5.9 34 111-144 186-219 (444)
230 2i1q_A DNA repair and recombin 97.0 0.0015 5.2E-08 68.3 9.2 33 112-144 87-120 (322)
231 3h4m_A Proteasome-activating n 97.0 0.0018 6.3E-08 66.0 9.5 28 119-146 48-75 (285)
232 1m2o_B GTP-binding protein SAR 96.9 0.00058 2E-08 65.5 4.7 36 109-145 11-46 (190)
233 1m7g_A Adenylylsulfate kinase; 96.9 0.00024 8.2E-09 69.7 1.3 41 119-160 22-64 (211)
234 2qor_A Guanylate kinase; phosp 96.8 0.00048 1.6E-08 67.1 3.1 28 119-146 9-36 (204)
235 1sxj_D Activator 1 41 kDa subu 96.8 5.4E-06 1.9E-10 87.5 -11.9 42 251-294 133-174 (353)
236 4fcw_A Chaperone protein CLPB; 96.8 0.001 3.5E-08 68.7 5.6 25 122-146 47-71 (311)
237 1y63_A LMAJ004144AAA protein; 96.8 0.00053 1.8E-08 65.8 3.0 32 114-145 2-33 (184)
238 1f6b_A SAR1; gtpases, N-termin 96.8 0.00027 9.2E-09 68.4 0.9 36 109-145 13-48 (198)
239 3d8b_A Fidgetin-like protein 1 96.8 0.006 2.1E-07 64.9 11.5 27 120-146 115-141 (357)
240 2v1u_A Cell division control p 96.7 0.00069 2.4E-08 71.8 3.7 27 120-146 42-68 (387)
241 2qz4_A Paraplegin; AAA+, SPG7, 96.7 0.0051 1.8E-07 61.6 9.8 27 120-146 37-63 (262)
242 2ffh_A Protein (FFH); SRP54, s 96.6 0.00048 1.7E-08 75.2 1.5 47 113-162 91-137 (425)
243 3lxw_A GTPase IMAP family memb 96.6 0.0055 1.9E-07 61.7 9.0 23 124-146 23-45 (247)
244 2if2_A Dephospho-COA kinase; a 96.6 0.00087 3E-08 64.9 3.0 21 124-144 3-23 (204)
245 1q57_A DNA primase/helicase; d 96.6 0.011 3.9E-07 65.7 12.3 34 111-144 231-264 (503)
246 2qag_A Septin-2, protein NEDD5 96.6 0.00016 5.5E-09 77.5 -2.7 45 108-159 29-73 (361)
247 3auy_A DNA double-strand break 96.5 0.0013 4.4E-08 70.6 4.1 31 112-143 16-46 (371)
248 1xp8_A RECA protein, recombina 96.5 0.028 9.5E-07 60.1 14.1 27 118-144 70-96 (366)
249 2ga8_A Hypothetical 39.9 kDa p 96.4 0.0003 1E-08 74.8 -1.5 38 109-146 9-48 (359)
250 3cmw_A Protein RECA, recombina 96.4 0.009 3.1E-07 75.1 11.1 28 118-145 728-755 (1706)
251 3cm0_A Adenylate kinase; ATP-b 96.4 0.0016 5.5E-08 61.9 3.4 26 120-145 2-27 (186)
252 2yvu_A Probable adenylyl-sulfa 96.4 0.0016 5.6E-08 62.1 3.5 27 120-146 11-37 (186)
253 1xwi_A SKD1 protein; VPS4B, AA 96.4 0.033 1.1E-06 58.3 13.7 28 119-146 42-69 (322)
254 2wji_A Ferrous iron transport 96.4 0.0018 6.1E-08 60.4 3.5 23 124-146 5-27 (165)
255 3t61_A Gluconokinase; PSI-biol 96.3 0.0015 5.3E-08 63.2 2.8 25 122-146 18-42 (202)
256 1j8m_F SRP54, signal recogniti 96.3 0.0004 1.4E-08 72.3 -1.5 47 113-161 89-136 (297)
257 2p5t_B PEZT; postsegregational 96.3 0.00086 3E-08 67.8 1.0 47 111-161 22-68 (253)
258 1np6_A Molybdopterin-guanine d 96.3 0.0018 6.2E-08 61.9 3.0 37 123-159 7-45 (174)
259 1sxj_C Activator 1 40 kDa subu 96.2 0.00051 1.8E-08 72.5 -1.1 40 108-147 30-71 (340)
260 1qhx_A CPT, protein (chloramph 96.2 0.0024 8.3E-08 60.2 3.7 25 122-146 3-27 (178)
261 2ohf_A Protein OLA1, GTP-bindi 96.2 0.0017 5.9E-08 70.1 2.8 44 116-159 16-69 (396)
262 3kb2_A SPBC2 prophage-derived 96.2 0.0023 8E-08 59.6 3.4 23 124-146 3-25 (173)
263 2r8r_A Sensor protein; KDPD, P 96.1 0.0027 9.4E-08 63.2 3.3 74 247-327 80-175 (228)
264 1q3t_A Cytidylate kinase; nucl 96.1 0.0028 9.6E-08 63.1 3.4 29 118-146 12-40 (236)
265 1kht_A Adenylate kinase; phosp 96.0 0.0034 1.2E-07 59.6 3.6 25 122-146 3-27 (192)
266 2zej_A Dardarin, leucine-rich 96.0 0.0032 1.1E-07 59.7 3.3 22 124-145 4-25 (184)
267 2vhj_A Ntpase P4, P4; non- hyd 96.0 0.009 3.1E-07 62.6 6.8 33 112-144 113-145 (331)
268 3n70_A Transport activator; si 96.0 0.016 5.5E-07 53.0 7.8 43 251-295 76-118 (145)
269 3r20_A Cytidylate kinase; stru 96.0 0.0035 1.2E-07 62.9 3.5 25 122-146 9-33 (233)
270 1xx6_A Thymidine kinase; NESG, 96.0 0.0056 1.9E-07 59.4 4.8 53 251-308 81-142 (191)
271 2rhm_A Putative kinase; P-loop 95.9 0.0039 1.3E-07 59.4 3.4 27 120-146 3-29 (193)
272 2ze6_A Isopentenyl transferase 95.9 0.0039 1.3E-07 63.1 3.3 24 123-146 2-25 (253)
273 3lw7_A Adenylate kinase relate 95.8 0.0045 1.5E-07 57.5 3.3 19 124-142 3-21 (179)
274 3trf_A Shikimate kinase, SK; a 95.8 0.0049 1.7E-07 58.5 3.6 26 121-146 4-29 (185)
275 3ihw_A Centg3; RAS, centaurin, 95.8 0.008 2.7E-07 57.1 5.1 22 124-145 22-43 (184)
276 3co5_A Putative two-component 95.7 0.014 4.7E-07 53.4 6.3 42 251-293 75-116 (143)
277 2v54_A DTMP kinase, thymidylat 95.7 0.0054 1.9E-07 59.0 3.7 26 121-146 3-28 (204)
278 1ex7_A Guanylate kinase; subst 95.7 0.0049 1.7E-07 59.6 3.2 23 124-146 3-25 (186)
279 2j9r_A Thymidine kinase; TK1, 95.7 0.02 7E-07 56.4 7.7 53 251-308 101-162 (214)
280 2jaq_A Deoxyguanosine kinase; 95.7 0.0054 1.8E-07 58.9 3.4 23 124-146 2-24 (205)
281 2plr_A DTMP kinase, probable t 95.7 0.006 2E-07 58.9 3.8 26 121-146 3-28 (213)
282 3iij_A Coilin-interacting nucl 95.7 0.005 1.7E-07 58.3 3.1 25 121-145 10-34 (180)
283 1vht_A Dephospho-COA kinase; s 95.7 0.0062 2.1E-07 59.6 3.8 24 121-144 3-26 (218)
284 3io5_A Recombination and repai 95.7 0.037 1.3E-06 57.9 9.7 26 117-143 24-49 (333)
285 1ly1_A Polynucleotide kinase; 95.6 0.0065 2.2E-07 57.0 3.6 22 123-144 3-24 (181)
286 3vfd_A Spastin; ATPase, microt 95.6 0.054 1.8E-06 58.0 11.1 27 120-146 146-172 (389)
287 2wwf_A Thymidilate kinase, put 95.6 0.0066 2.2E-07 58.8 3.5 27 120-146 8-34 (212)
288 2c95_A Adenylate kinase 1; tra 95.5 0.0064 2.2E-07 58.0 3.3 27 120-146 7-33 (196)
289 1via_A Shikimate kinase; struc 95.5 0.0065 2.2E-07 57.3 3.2 23 124-146 6-28 (175)
290 3cmu_A Protein RECA, recombina 95.5 0.033 1.1E-06 71.0 10.3 153 111-316 370-558 (2050)
291 1gtv_A TMK, thymidylate kinase 95.5 0.0034 1.2E-07 60.9 1.2 23 124-146 2-24 (214)
292 1gvn_B Zeta; postsegregational 95.4 0.0066 2.2E-07 62.7 3.2 36 120-158 31-66 (287)
293 1nn5_A Similar to deoxythymidy 95.4 0.0074 2.5E-07 58.5 3.4 27 120-146 7-33 (215)
294 1uf9_A TT1252 protein; P-loop, 95.4 0.008 2.7E-07 57.7 3.6 23 123-145 9-31 (203)
295 1tev_A UMP-CMP kinase; ploop, 95.4 0.0089 3.1E-07 56.7 3.7 24 122-145 3-26 (196)
296 3cmw_A Protein RECA, recombina 95.4 0.13 4.4E-06 64.8 14.9 153 111-316 370-558 (1706)
297 3hu3_A Transitional endoplasmi 95.4 0.015 5.1E-07 64.6 6.0 28 119-146 235-262 (489)
298 1nks_A Adenylate kinase; therm 95.4 0.0079 2.7E-07 57.0 3.2 23 124-146 3-25 (194)
299 3dm5_A SRP54, signal recogniti 95.3 0.13 4.4E-06 56.2 13.1 26 121-146 99-124 (443)
300 3k53_A Ferrous iron transport 95.3 0.0081 2.8E-07 61.1 3.3 23 124-146 5-27 (271)
301 2bwj_A Adenylate kinase 5; pho 95.2 0.008 2.7E-07 57.5 2.8 27 120-146 10-36 (199)
302 1aky_A Adenylate kinase; ATP:A 95.2 0.011 3.7E-07 58.0 3.7 27 120-146 2-28 (220)
303 1xjc_A MOBB protein homolog; s 95.1 0.01 3.5E-07 56.4 3.2 24 123-146 5-28 (169)
304 1ko7_A HPR kinase/phosphatase; 95.1 0.016 5.4E-07 60.6 4.8 36 109-145 132-167 (314)
305 2ged_A SR-beta, signal recogni 95.0 0.011 3.8E-07 56.0 3.2 24 123-146 49-72 (193)
306 1z2a_A RAS-related protein RAB 95.0 0.011 3.6E-07 54.3 2.9 23 124-146 7-29 (168)
307 2nzj_A GTP-binding protein REM 95.0 0.012 4.2E-07 54.4 3.3 23 124-146 6-28 (175)
308 2orv_A Thymidine kinase; TP4A 95.0 0.057 1.9E-06 53.8 8.2 54 249-308 88-150 (234)
309 2erx_A GTP-binding protein DI- 95.0 0.012 4.2E-07 54.0 3.3 22 124-145 5-26 (172)
310 2vli_A Antibiotic resistance p 95.0 0.0089 3E-07 56.4 2.3 26 121-146 4-29 (183)
311 3q72_A GTP-binding protein RAD 95.0 0.01 3.5E-07 54.5 2.6 23 124-146 4-26 (166)
312 2z0h_A DTMP kinase, thymidylat 95.0 0.013 4.4E-07 55.9 3.4 23 124-146 2-24 (197)
313 1zd8_A GTP:AMP phosphotransfer 94.9 0.013 4.3E-07 57.9 3.4 27 120-146 5-31 (227)
314 1kao_A RAP2A; GTP-binding prot 94.9 0.012 4.2E-07 53.6 3.0 22 124-145 5-26 (167)
315 2dyk_A GTP-binding protein; GT 94.9 0.013 4.3E-07 53.5 3.0 23 124-146 3-25 (161)
316 2cdn_A Adenylate kinase; phosp 94.9 0.015 5.3E-07 55.9 3.7 25 122-146 20-44 (201)
317 3q85_A GTP-binding protein REM 94.9 0.014 4.7E-07 53.8 3.3 23 124-146 4-26 (169)
318 3ake_A Cytidylate kinase; CMP 94.9 0.013 4.4E-07 56.4 3.2 23 124-146 4-26 (208)
319 1u8z_A RAS-related protein RAL 94.9 0.013 4.3E-07 53.6 2.9 23 124-146 6-28 (168)
320 2ce2_X GTPase HRAS; signaling 94.8 0.012 4E-07 53.6 2.7 23 124-146 5-27 (166)
321 3b1v_A Ferrous iron uptake tra 94.8 0.015 5E-07 59.6 3.5 23 124-146 5-27 (272)
322 1z0j_A RAB-22, RAS-related pro 94.8 0.013 4.6E-07 53.7 3.0 23 124-146 8-30 (170)
323 4b4t_K 26S protease regulatory 94.8 0.17 5.8E-06 55.1 12.1 26 121-146 205-230 (428)
324 3fb4_A Adenylate kinase; psych 94.8 0.015 5.1E-07 56.6 3.4 22 124-145 2-23 (216)
325 3tw8_B RAS-related protein RAB 94.8 0.013 4.5E-07 54.4 2.9 23 124-146 11-33 (181)
326 1z08_A RAS-related protein RAB 94.8 0.014 4.8E-07 53.7 3.0 22 124-145 8-29 (170)
327 1jal_A YCHF protein; nucleotid 94.7 0.022 7.4E-07 60.8 4.8 37 122-158 2-48 (363)
328 1ek0_A Protein (GTP-binding pr 94.7 0.014 4.8E-07 53.5 2.9 23 124-146 5-27 (170)
329 1g16_A RAS-related protein SEC 94.7 0.013 4.4E-07 53.8 2.7 23 124-146 5-27 (170)
330 2lkc_A Translation initiation 94.7 0.018 6.3E-07 53.4 3.8 24 122-145 8-31 (178)
331 1c1y_A RAS-related protein RAP 94.7 0.014 4.9E-07 53.3 2.9 22 124-145 5-26 (167)
332 1zuh_A Shikimate kinase; alpha 94.7 0.017 5.9E-07 53.8 3.5 25 122-146 7-31 (168)
333 2pbr_A DTMP kinase, thymidylat 94.7 0.016 5.6E-07 54.9 3.4 23 124-146 2-24 (195)
334 1zak_A Adenylate kinase; ATP:A 94.7 0.013 4.6E-07 57.4 2.9 26 121-146 4-29 (222)
335 1wms_A RAB-9, RAB9, RAS-relate 94.7 0.015 5E-07 54.1 3.0 23 124-146 9-31 (177)
336 1fzq_A ADP-ribosylation factor 94.7 0.013 4.4E-07 55.3 2.6 22 124-145 18-39 (181)
337 1ky3_A GTP-binding protein YPT 94.7 0.015 5E-07 54.1 3.0 23 124-146 10-32 (182)
338 1svi_A GTP-binding protein YSX 94.7 0.014 4.7E-07 55.3 2.8 22 124-145 25-46 (195)
339 1ukz_A Uridylate kinase; trans 94.7 0.017 6E-07 55.5 3.5 25 122-146 15-39 (203)
340 4ag6_A VIRB4 ATPase, type IV s 94.7 0.01 3.6E-07 63.7 2.1 45 251-295 262-309 (392)
341 1e6c_A Shikimate kinase; phosp 94.6 0.015 5.1E-07 54.3 2.9 24 123-146 3-26 (173)
342 3dl0_A Adenylate kinase; phosp 94.6 0.018 6E-07 56.2 3.4 23 124-146 2-24 (216)
343 2pt5_A Shikimate kinase, SK; a 94.6 0.019 6.4E-07 53.4 3.5 23 124-146 2-24 (168)
344 2fn4_A P23, RAS-related protei 94.6 0.015 5.1E-07 54.0 2.8 22 124-145 11-32 (181)
345 1qf9_A UMP/CMP kinase, protein 94.6 0.019 6.4E-07 54.4 3.4 24 122-145 6-29 (194)
346 3a8t_A Adenylate isopentenyltr 94.6 0.026 9E-07 59.5 4.8 26 121-146 39-64 (339)
347 3pqc_A Probable GTP-binding pr 94.6 0.017 5.7E-07 54.5 3.1 23 124-146 25-47 (195)
348 3a4m_A L-seryl-tRNA(SEC) kinas 94.6 0.02 6.8E-07 57.9 3.8 25 121-145 3-27 (260)
349 2iyv_A Shikimate kinase, SK; t 94.5 0.015 5.2E-07 55.0 2.7 24 123-146 3-26 (184)
350 1r2q_A RAS-related protein RAB 94.5 0.017 5.7E-07 53.0 2.9 22 124-145 8-29 (170)
351 2cxx_A Probable GTP-binding pr 94.5 0.016 5.6E-07 54.4 2.8 23 124-146 3-25 (190)
352 4dsu_A GTPase KRAS, isoform 2B 94.5 0.017 5.9E-07 54.1 3.0 23 124-146 6-28 (189)
353 3clv_A RAB5 protein, putative; 94.5 0.017 5.9E-07 54.5 3.0 23 124-146 9-31 (208)
354 2hxs_A RAB-26, RAS-related pro 94.5 0.02 6.7E-07 53.2 3.3 22 124-145 8-29 (178)
355 4b4t_L 26S protease subunit RP 94.5 0.19 6.5E-06 54.8 11.5 71 244-320 267-354 (437)
356 3tlx_A Adenylate kinase 2; str 94.4 0.022 7.4E-07 57.1 3.7 25 121-145 28-52 (243)
357 1upt_A ARL1, ADP-ribosylation 94.4 0.018 6.3E-07 52.9 2.9 22 124-145 9-30 (171)
358 2qmh_A HPR kinase/phosphorylas 94.4 0.032 1.1E-06 54.5 4.6 37 109-146 22-58 (205)
359 2oil_A CATX-8, RAS-related pro 94.4 0.018 6.3E-07 54.5 2.9 23 124-146 27-49 (193)
360 3bc1_A RAS-related protein RAB 94.4 0.018 6.3E-07 54.0 2.9 22 124-145 13-34 (195)
361 2ew1_A RAS-related protein RAB 94.4 0.034 1.1E-06 53.7 4.8 23 124-146 28-50 (201)
362 1r8s_A ADP-ribosylation factor 94.4 0.02 6.7E-07 52.4 2.9 21 125-145 3-23 (164)
363 3t1o_A Gliding protein MGLA; G 94.4 0.02 7E-07 53.9 3.2 24 124-147 16-39 (198)
364 1wf3_A GTP-binding protein; GT 94.3 0.022 7.4E-07 59.2 3.5 26 120-146 6-31 (301)
365 2y8e_A RAB-protein 6, GH09086P 94.3 0.019 6.4E-07 53.2 2.7 22 124-145 16-37 (179)
366 1moz_A ARL1, ADP-ribosylation 94.3 0.013 4.6E-07 54.7 1.6 23 122-144 18-40 (183)
367 3t5d_A Septin-7; GTP-binding p 94.3 0.018 6.1E-07 58.7 2.7 23 124-146 10-32 (274)
368 2g6b_A RAS-related protein RAB 94.3 0.021 7.1E-07 53.1 2.9 23 124-146 12-34 (180)
369 1z0f_A RAB14, member RAS oncog 94.2 0.021 7.2E-07 52.9 2.9 23 124-146 17-39 (179)
370 2a9k_A RAS-related protein RAL 94.2 0.021 7.2E-07 53.3 2.9 23 124-146 20-42 (187)
371 3iby_A Ferrous iron transport 94.2 0.023 7.8E-07 57.5 3.3 22 124-145 3-24 (256)
372 2efe_B Small GTP-binding prote 94.2 0.022 7.7E-07 53.0 3.0 23 124-146 14-36 (181)
373 3con_A GTPase NRAS; structural 94.2 0.022 7.5E-07 53.7 2.9 23 124-146 23-45 (190)
374 3iev_A GTP-binding protein ERA 94.2 0.024 8.3E-07 58.9 3.5 23 124-146 12-34 (308)
375 1uj2_A Uridine-cytidine kinase 94.2 0.025 8.4E-07 56.8 3.4 24 123-146 23-46 (252)
376 2grj_A Dephospho-COA kinase; T 94.1 0.026 8.9E-07 54.6 3.4 24 122-145 12-35 (192)
377 3be4_A Adenylate kinase; malar 94.1 0.025 8.7E-07 55.3 3.3 25 122-146 5-29 (217)
378 2dby_A GTP-binding protein; GD 94.1 0.022 7.5E-07 61.0 2.9 21 125-145 4-24 (368)
379 2bme_A RAB4A, RAS-related prot 94.1 0.022 7.6E-07 53.3 2.7 23 124-146 12-34 (186)
380 1nrj_B SR-beta, signal recogni 94.0 0.024 8E-07 55.0 2.9 23 124-146 14-36 (218)
381 1vg8_A RAS-related protein RAB 94.0 0.024 8.3E-07 54.2 3.0 23 124-146 10-32 (207)
382 1ksh_A ARF-like protein 2; sma 94.0 0.025 8.6E-07 53.1 3.0 26 121-146 17-42 (186)
383 2bov_A RAla, RAS-related prote 94.0 0.024 8.2E-07 54.1 2.9 23 124-146 16-38 (206)
384 2xtp_A GTPase IMAP family memb 94.0 0.024 8.3E-07 56.9 3.1 23 124-146 24-46 (260)
385 2xb4_A Adenylate kinase; ATP-b 94.0 0.028 9.6E-07 55.3 3.4 22 124-145 2-23 (223)
386 2gf9_A RAS-related protein RAB 94.0 0.025 8.5E-07 53.5 2.9 23 124-146 24-46 (189)
387 2gf0_A GTP-binding protein DI- 94.0 0.024 8.1E-07 53.8 2.8 22 124-145 10-31 (199)
388 1jbk_A CLPB protein; beta barr 94.0 0.033 1.1E-06 52.0 3.7 27 120-146 41-67 (195)
389 3cbq_A GTP-binding protein REM 93.9 0.023 7.8E-07 54.5 2.6 22 124-145 25-46 (195)
390 1qvr_A CLPB protein; coiled co 93.9 0.057 1.9E-06 64.1 6.5 24 123-146 589-612 (854)
391 3tkl_A RAS-related protein RAB 93.9 0.026 8.8E-07 53.4 2.9 23 124-146 18-40 (196)
392 2fg5_A RAB-22B, RAS-related pr 93.9 0.025 8.5E-07 53.7 2.8 23 124-146 25-47 (192)
393 3kkq_A RAS-related protein M-R 93.9 0.027 9.2E-07 52.7 2.9 23 124-146 20-42 (183)
394 1m7b_A RND3/RHOE small GTP-bin 93.9 0.025 8.5E-07 53.3 2.7 22 124-145 9-30 (184)
395 1zbd_A Rabphilin-3A; G protein 93.9 0.03 1E-06 53.5 3.2 23 124-146 10-32 (203)
396 3umf_A Adenylate kinase; rossm 93.9 0.033 1.1E-06 55.1 3.6 28 119-146 26-53 (217)
397 1mh1_A RAC1; GTP-binding, GTPa 93.8 0.028 9.6E-07 52.4 2.9 22 124-145 7-28 (186)
398 1jwy_B Dynamin A GTPase domain 93.8 0.03 1E-06 57.8 3.4 23 124-146 26-48 (315)
399 3a1s_A Iron(II) transport prot 93.8 0.032 1.1E-06 56.4 3.5 23 124-146 7-29 (258)
400 2il1_A RAB12; G-protein, GDP, 93.8 0.028 9.5E-07 53.5 2.9 22 124-145 28-49 (192)
401 2f6r_A COA synthase, bifunctio 93.8 0.029 1E-06 57.5 3.2 21 123-143 76-96 (281)
402 3i8s_A Ferrous iron transport 93.8 0.03 1E-06 57.1 3.3 23 124-146 5-27 (274)
403 1z06_A RAS-related protein RAB 93.8 0.029 1E-06 53.0 3.0 22 124-145 22-43 (189)
404 4edh_A DTMP kinase, thymidylat 93.8 0.037 1.3E-06 54.5 3.8 27 120-146 4-30 (213)
405 2wsm_A Hydrogenase expression/ 93.8 0.029 1E-06 54.5 3.0 23 123-145 31-53 (221)
406 1e4v_A Adenylate kinase; trans 93.7 0.031 1.1E-06 54.4 3.2 23 124-146 2-24 (214)
407 2cjw_A GTP-binding protein GEM 93.7 0.029 1E-06 53.6 2.9 21 124-144 8-28 (192)
408 3oes_A GTPase rhebl1; small GT 93.7 0.028 9.4E-07 53.9 2.7 23 124-146 26-48 (201)
409 4dhe_A Probable GTP-binding pr 93.7 0.018 6.2E-07 55.9 1.4 24 123-146 30-53 (223)
410 1zj6_A ADP-ribosylation factor 93.7 0.032 1.1E-06 52.6 3.0 23 123-145 17-39 (187)
411 3t5g_A GTP-binding protein RHE 93.7 0.029 1E-06 52.3 2.7 21 124-144 8-28 (181)
412 1ak2_A Adenylate kinase isoenz 93.6 0.039 1.3E-06 54.6 3.7 26 121-146 15-40 (233)
413 2o52_A RAS-related protein RAB 93.6 0.032 1.1E-06 53.5 3.0 22 124-145 27-48 (200)
414 1ltq_A Polynucleotide kinase; 93.6 0.036 1.2E-06 56.9 3.6 22 123-144 3-24 (301)
415 2a5j_A RAS-related protein RAB 93.6 0.032 1.1E-06 52.9 2.9 23 124-146 23-45 (191)
416 3dz8_A RAS-related protein RAB 93.6 0.03 1E-06 53.1 2.7 23 124-146 25-47 (191)
417 3bwd_D RAC-like GTP-binding pr 93.6 0.032 1.1E-06 51.9 2.9 22 124-145 10-31 (182)
418 1a7j_A Phosphoribulokinase; tr 93.6 0.018 6E-07 59.6 1.1 26 121-146 4-29 (290)
419 2h57_A ADP-ribosylation factor 93.6 0.025 8.7E-07 53.5 2.2 23 124-146 23-45 (190)
420 2qu8_A Putative nucleolar GTP- 93.6 0.032 1.1E-06 54.7 3.0 22 124-145 31-52 (228)
421 2bcg_Y Protein YP2, GTP-bindin 93.6 0.03 1E-06 53.7 2.7 23 124-146 10-32 (206)
422 3v9p_A DTMP kinase, thymidylat 93.6 0.028 9.7E-07 55.9 2.6 28 119-146 22-49 (227)
423 1x3s_A RAS-related protein RAB 93.6 0.033 1.1E-06 52.5 2.9 23 124-146 17-39 (195)
424 1zd9_A ADP-ribosylation factor 93.6 0.033 1.1E-06 52.7 2.9 22 124-145 24-45 (188)
425 2atv_A RERG, RAS-like estrogen 93.5 0.034 1.2E-06 52.9 3.0 22 124-145 30-51 (196)
426 3cph_A RAS-related protein SEC 93.5 0.033 1.1E-06 53.5 2.9 24 123-146 21-44 (213)
427 4bas_A ADP-ribosylation factor 93.5 0.033 1.1E-06 52.7 2.9 23 124-146 19-41 (199)
428 2h17_A ADP-ribosylation factor 93.5 0.03 1E-06 52.6 2.6 22 124-145 23-44 (181)
429 3reg_A RHO-like small GTPase; 93.5 0.034 1.2E-06 52.7 2.9 23 124-146 25-47 (194)
430 2f7s_A C25KG, RAS-related prot 93.5 0.038 1.3E-06 53.4 3.3 23 124-146 27-49 (217)
431 2p5s_A RAS and EF-hand domain 93.5 0.034 1.2E-06 53.1 2.9 24 123-146 29-52 (199)
432 2aka_B Dynamin-1; fusion prote 93.4 0.033 1.1E-06 56.9 2.8 23 124-146 28-50 (299)
433 3exa_A TRNA delta(2)-isopenten 93.4 0.045 1.6E-06 57.1 3.8 25 122-146 3-27 (322)
434 3lv8_A DTMP kinase, thymidylat 93.4 0.042 1.4E-06 55.1 3.4 26 121-146 26-51 (236)
435 2fv8_A H6, RHO-related GTP-bin 93.4 0.035 1.2E-06 53.5 2.8 23 124-146 27-49 (207)
436 3llu_A RAS-related GTP-binding 93.4 0.042 1.4E-06 52.4 3.3 23 124-146 22-44 (196)
437 3zvl_A Bifunctional polynucleo 93.3 0.04 1.4E-06 59.9 3.4 26 120-145 256-281 (416)
438 3d3q_A TRNA delta(2)-isopenten 93.3 0.041 1.4E-06 58.1 3.4 24 123-146 8-31 (340)
439 2q3h_A RAS homolog gene family 93.3 0.042 1.5E-06 52.3 3.3 22 124-145 22-43 (201)
440 2iwr_A Centaurin gamma 1; ANK 93.3 0.03 1E-06 52.1 2.1 22 124-145 9-30 (178)
441 3pxi_A Negative regulator of g 93.3 0.16 5.4E-06 59.4 8.7 23 124-146 523-545 (758)
442 2j1l_A RHO-related GTP-binding 93.3 0.041 1.4E-06 53.4 3.1 22 124-145 36-57 (214)
443 2p65_A Hypothetical protein PF 93.2 0.04 1.4E-06 51.4 2.8 27 120-146 41-67 (187)
444 3c5c_A RAS-like protein 12; GD 93.2 0.041 1.4E-06 52.1 3.0 22 124-145 23-44 (187)
445 3tmk_A Thymidylate kinase; pho 93.2 0.047 1.6E-06 53.9 3.4 28 120-147 3-30 (216)
446 1gwn_A RHO-related GTP-binding 93.2 0.038 1.3E-06 53.5 2.7 23 124-146 30-52 (205)
447 4tmk_A Protein (thymidylate ki 93.2 0.049 1.7E-06 53.6 3.5 26 121-146 2-27 (213)
448 2fu5_C RAS-related protein RAB 93.1 0.028 9.6E-07 52.6 1.6 22 124-145 10-31 (183)
449 3tqf_A HPR(Ser) kinase; transf 93.1 0.074 2.5E-06 50.7 4.5 35 109-144 4-38 (181)
450 3def_A T7I23.11 protein; chlor 93.1 0.043 1.5E-06 55.4 3.1 23 124-146 38-60 (262)
451 2fh5_B SR-beta, signal recogni 93.1 0.046 1.6E-06 52.7 3.2 23 124-146 9-31 (214)
452 2b6h_A ADP-ribosylation factor 93.1 0.04 1.4E-06 52.5 2.6 22 124-145 31-52 (192)
453 3sr0_A Adenylate kinase; phosp 93.1 0.05 1.7E-06 53.2 3.4 23 124-146 2-24 (206)
454 2gco_A H9, RHO-related GTP-bin 93.0 0.041 1.4E-06 52.7 2.7 23 124-146 27-49 (201)
455 3ld9_A DTMP kinase, thymidylat 93.0 0.057 1.9E-06 53.6 3.8 27 120-146 19-45 (223)
456 3cmu_A Protein RECA, recombina 93.0 0.19 6.5E-06 64.2 9.2 35 112-146 720-756 (2050)
457 2ocp_A DGK, deoxyguanosine kin 93.0 0.054 1.8E-06 53.8 3.6 26 121-146 1-26 (241)
458 2zts_A Putative uncharacterize 93.0 0.066 2.2E-06 52.8 4.1 60 249-308 133-206 (251)
459 1p5z_B DCK, deoxycytidine kina 92.9 0.035 1.2E-06 56.0 2.2 27 120-146 22-48 (263)
460 1h65_A Chloroplast outer envel 92.9 0.05 1.7E-06 55.1 3.3 23 124-146 41-63 (270)
461 3crm_A TRNA delta(2)-isopenten 92.9 0.053 1.8E-06 56.9 3.4 24 123-146 6-29 (323)
462 2h92_A Cytidylate kinase; ross 92.9 0.049 1.7E-06 52.9 3.0 25 122-146 3-27 (219)
463 1sky_E F1-ATPase, F1-ATP synth 92.9 0.058 2E-06 59.3 3.8 35 111-146 141-175 (473)
464 1njg_A DNA polymerase III subu 92.8 0.061 2.1E-06 51.9 3.6 43 250-294 125-167 (250)
465 2atx_A Small GTP binding prote 92.8 0.049 1.7E-06 51.6 2.8 22 124-145 20-41 (194)
466 2g3y_A GTP-binding protein GEM 92.8 0.062 2.1E-06 52.6 3.5 22 124-145 39-60 (211)
467 4djt_A GTP-binding nuclear pro 92.6 0.027 9.1E-07 54.6 0.7 22 124-145 13-34 (218)
468 3euj_A Chromosome partition pr 92.6 0.16 5.3E-06 56.2 6.9 71 231-308 377-464 (483)
469 2hf9_A Probable hydrogenase ni 92.6 0.055 1.9E-06 52.7 2.9 23 123-145 39-61 (226)
470 3foz_A TRNA delta(2)-isopenten 92.6 0.07 2.4E-06 55.6 3.8 25 122-146 10-34 (316)
471 2x77_A ADP-ribosylation factor 92.5 0.039 1.3E-06 52.0 1.6 21 124-144 24-44 (189)
472 3cnl_A YLQF, putative uncharac 92.5 0.065 2.2E-06 54.4 3.4 24 123-146 100-123 (262)
473 3cpj_B GTP-binding protein YPT 92.5 0.059 2E-06 52.5 3.0 23 124-146 15-37 (223)
474 2hup_A RAS-related protein RAB 92.5 0.056 1.9E-06 51.9 2.8 22 124-145 31-52 (201)
475 4dcu_A GTP-binding protein ENG 92.4 0.053 1.8E-06 59.5 2.8 52 238-293 89-141 (456)
476 2yc2_C IFT27, small RAB-relate 92.3 0.029 9.9E-07 53.5 0.5 22 124-145 22-43 (208)
477 4gzl_A RAS-related C3 botulinu 92.2 0.062 2.1E-06 51.7 2.7 23 123-145 31-53 (204)
478 3eph_A TRNA isopentenyltransfe 92.1 0.078 2.7E-06 57.2 3.5 25 122-146 2-26 (409)
479 3q3j_B RHO-related GTP-binding 92.0 0.073 2.5E-06 51.7 2.9 22 124-145 29-50 (214)
480 2j0v_A RAC-like GTP-binding pr 91.9 0.069 2.4E-06 51.3 2.7 22 124-145 11-32 (212)
481 2r62_A Cell division protease 91.9 0.021 7E-07 57.6 -1.2 33 112-146 36-68 (268)
482 2orw_A Thymidine kinase; TMTK, 91.7 0.098 3.3E-06 50.1 3.4 53 251-308 76-137 (184)
483 1ypw_A Transitional endoplasmi 91.5 0.03 1E-06 66.1 -0.5 32 115-146 504-535 (806)
484 3syl_A Protein CBBX; photosynt 91.3 0.11 3.6E-06 53.3 3.5 27 120-146 65-91 (309)
485 1puj_A YLQF, conserved hypothe 91.3 0.11 3.9E-06 53.2 3.6 25 122-146 120-144 (282)
486 2chg_A Replication factor C sm 91.3 0.1 3.6E-06 49.7 3.2 41 251-293 102-142 (226)
487 3r7w_A Gtpase1, GTP-binding pr 91.2 0.11 3.8E-06 53.8 3.5 24 122-145 3-26 (307)
488 3gmt_A Adenylate kinase; ssgci 91.2 0.11 3.7E-06 51.8 3.2 24 123-146 9-32 (230)
489 1wxq_A GTP-binding protein; st 91.0 0.1 3.5E-06 56.3 3.1 41 208-257 181-221 (397)
490 3p32_A Probable GTPase RV1496/ 91.0 0.12 4.2E-06 54.7 3.6 26 121-146 78-103 (355)
491 2hjg_A GTP-binding protein ENG 91.0 0.096 3.3E-06 57.1 2.9 22 124-145 5-26 (436)
492 2x2e_A Dynamin-1; nitration, h 90.9 0.074 2.5E-06 56.2 1.9 23 124-146 33-55 (353)
493 4a9a_A Ribosome-interacting GT 90.9 0.12 4.2E-06 55.2 3.5 37 124-160 74-120 (376)
494 3geh_A MNME, tRNA modification 90.8 0.094 3.2E-06 57.7 2.6 25 121-145 223-247 (462)
495 4hlc_A DTMP kinase, thymidylat 90.7 0.15 5.2E-06 49.7 3.7 25 122-146 2-26 (205)
496 3th5_A RAS-related C3 botulinu 90.1 0.047 1.6E-06 52.3 0.0 21 124-144 32-52 (204)
497 1d2n_A N-ethylmaleimide-sensit 90.7 0.13 4.6E-06 51.8 3.4 26 120-145 62-87 (272)
498 1lw7_A Transcriptional regulat 90.5 0.13 4.4E-06 54.6 3.3 29 233-261 296-329 (365)
499 1g5t_A COB(I)alamin adenosyltr 90.5 0.19 6.5E-06 48.7 4.1 72 239-311 106-181 (196)
500 1f5n_A Interferon-induced guan 90.4 0.11 3.8E-06 58.8 2.8 33 111-146 30-62 (592)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=2.9e-50 Score=432.07 Aligned_cols=222 Identities=23% Similarity=0.369 Sum_probs=198.0
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++||+++|..+ .+...+|+||||++++||+++|+||||||||||+|+|+|+.+
T Consensus 23 ~mi~v~~ls~~y~~~-----------------------~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 23 HMIKLSNITKVFHQG-----------------------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp CCEEEEEEEEEEECS-----------------------SSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred ceEEEEeEEEEeCCC-----------------------CCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC
Confidence 369999999998632 123569999999999999999999999999999999999874
Q ss_pred CCCccEEEECCEeCCh-------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc
Q 044602 148 DDVKGNITYNDIPYNP-------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER 220 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~-------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 220 (674)
+++|+|.++|+++.. ..|+.||||+|++.+++.+||+||+.++.... ..++++..++++++|+.+||.+
T Consensus 80 -p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~---~~~~~~~~~~v~~lL~~vgL~~ 155 (366)
T 3tui_C 80 -PTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGD 155 (366)
T ss_dssp -CSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTCGG
T ss_pred -CCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCch
Confidence 569999999999852 24678999999999999999999999987654 3466777889999999999998
Q ss_pred cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHh
Q 044602 221 CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFH 299 (674)
Q Consensus 221 ~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~ 299 (674)
..++++ .+|||||||||+|||||+.+|++|||||||||||+.++..+++.|++++++ |+|||++|||+. ++.+
T Consensus 156 ~~~~~~-----~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~ 229 (366)
T 3tui_C 156 KHDSYP-----SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKR 229 (366)
T ss_dssp GTTCCT-----TTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHH
T ss_pred HhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHH
Confidence 877764 589999999999999999999999999999999999999999999999764 999999999975 5788
Q ss_pred hcCEEEEEeCCEEEEecChhHHH
Q 044602 300 MFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 300 ~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+||||++|++|++++.|+++++.
T Consensus 230 ~aDrv~vl~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 230 ICDCVAVISNGELIEQDTVSEVF 252 (366)
T ss_dssp HCSEEEEEETTEEEECCBHHHHH
T ss_pred hCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999874
No 2
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=8.7e-50 Score=406.86 Aligned_cols=221 Identities=29% Similarity=0.485 Sum_probs=189.9
Q ss_pred EEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 044602 70 LKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD 149 (674)
Q Consensus 70 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~ 149 (674)
++++||+++|+.. ...+++|+||||++++||+++|+||||||||||+|+|+|+++ +
T Consensus 2 l~~~~l~~~y~~~-----------------------~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~-p 57 (235)
T 3tif_A 2 VKLKNVTKTYKMG-----------------------EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK-P 57 (235)
T ss_dssp EEEEEEEEEEEET-----------------------TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-C
T ss_pred EEEEEEEEEeCCC-----------------------CcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-C
Confidence 7899999988631 112469999999999999999999999999999999999884 5
Q ss_pred CccEEEECCEeCCh----h---c-cccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 044602 150 VKGNITYNDIPYNP----A---L-KRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC 221 (674)
Q Consensus 150 ~~G~I~~~g~~~~~----~---~-~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 221 (674)
.+|+|.++|+++.. . . ++.+|||+|++.+++.+||+||+.++...+......+++..+++.++++.+||.+.
T Consensus 58 ~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 137 (235)
T 3tif_A 58 TEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEER 137 (235)
T ss_dssp SEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGG
T ss_pred CceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChh
Confidence 69999999998752 1 1 34699999999999999999999998754422234566777889999999999875
Q ss_pred c-cccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHh
Q 044602 222 R-HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFH 299 (674)
Q Consensus 222 ~-~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~ 299 (674)
. ++.+ .+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++|||+. +.+
T Consensus 138 ~~~~~~-----~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~ 210 (235)
T 3tif_A 138 FANHKP-----NQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VAR 210 (235)
T ss_dssp GTTCCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHT
T ss_pred hhhCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHH
Confidence 3 6554 589999999999999999999999999999999999999999999999765 999999999985 358
Q ss_pred hcCEEEEEeCCEEEEecChhHH
Q 044602 300 MFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 300 ~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
+||+|++|++|+++..++++++
T Consensus 211 ~~d~i~~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 211 FGERIIYLKDGEVEREEKLRGF 232 (235)
T ss_dssp TSSEEEEEETTEEEEEEECC--
T ss_pred hCCEEEEEECCEEEEEcChhhh
Confidence 9999999999999999988765
No 3
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.5e-49 Score=413.63 Aligned_cols=219 Identities=30% Similarity=0.492 Sum_probs=192.5
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|+. .+.+|+||||++++||+++|+||||||||||+|+|+|+++
T Consensus 7 ~l~i~~ls~~y~~--------------------------~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~- 59 (275)
T 3gfo_A 7 ILKVEELNYNYSD--------------------------GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK- 59 (275)
T ss_dssp EEEEEEEEEECTT--------------------------SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC-
T ss_pred EEEEEEEEEEECC--------------------------CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-
Confidence 5899999997741 2359999999999999999999999999999999999884
Q ss_pred CCccEEEECCEeCC--h----hccccEEEEccCC-CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 044602 149 DVKGNITYNDIPYN--P----ALKRRIGFVTQDD-VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC 221 (674)
Q Consensus 149 ~~~G~I~~~g~~~~--~----~~~~~igyv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 221 (674)
+.+|+|.++|+++. . .+++.+|||+|++ ..+..+||+||+.|+.... ..++++..++++++++.+||.+.
T Consensus 60 p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~ 136 (275)
T 3gfo_A 60 PSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHL 136 (275)
T ss_dssp CSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGG
T ss_pred CCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchh
Confidence 56999999999983 2 3567899999996 2344689999999987543 34566777889999999999988
Q ss_pred ccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEecCCchHHHhh
Q 044602 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVA-KAGRTVITTIHQPSSRMFHM 300 (674)
Q Consensus 222 ~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~~~H~~~~~i~~~ 300 (674)
.++.++ +|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++ ++|+|||++||++.. +.++
T Consensus 137 ~~~~~~-----~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~-~~~~ 210 (275)
T 3gfo_A 137 KDKPTH-----CLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDI-VPLY 210 (275)
T ss_dssp TTSBGG-----GSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSS-GGGG
T ss_pred hcCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHH-HHHh
Confidence 887654 899999999999999999999999999999999999999999999997 569999999999874 6789
Q ss_pred cCEEEEEeCCEEEEecChhHHHH
Q 044602 301 FDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 301 ~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
||||++|++|++++.|+++++.+
T Consensus 211 ~drv~~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 211 CDNVFVMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp CSEEEEEETTEEEEEECHHHHTH
T ss_pred CCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999998753
No 4
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=3.4e-49 Score=408.58 Aligned_cols=217 Identities=27% Similarity=0.485 Sum_probs=191.9
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|. .+++|+||||++++||+++|+||||||||||+|+|+|+++
T Consensus 24 ~l~i~~l~~~y~---------------------------~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~- 75 (263)
T 2olj_A 24 MIDVHQLKKSFG---------------------------SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED- 75 (263)
T ss_dssp SEEEEEEEEEET---------------------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-
T ss_pred eEEEEeEEEEEC---------------------------CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC-
Confidence 599999999873 2459999999999999999999999999999999999884
Q ss_pred CCccEEEECCEeCC--h----hccccEEEEccCCCCCCCCCHHHHHHHHH-hhcCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 044602 149 DVKGNITYNDIPYN--P----ALKRRIGFVTQDDVLLPQLTVEETLVFAA-FLRLPGNMNRQQKYARVQMILKELGLERC 221 (674)
Q Consensus 149 ~~~G~I~~~g~~~~--~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 221 (674)
+.+|+|.++|+++. . .+++.+|||+|++.+++.+||+||+.++. ... ...+++..++++++++.+||.+.
T Consensus 76 p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~ 152 (263)
T 2olj_A 76 FDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDK 152 (263)
T ss_dssp CSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGG
T ss_pred CCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchH
Confidence 56999999999873 1 34667999999999999999999999964 322 23445556788999999999888
Q ss_pred ccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhc
Q 044602 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMF 301 (674)
Q Consensus 222 ~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~ 301 (674)
.++++ .+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++|||+. ++.++|
T Consensus 153 ~~~~~-----~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~ 226 (263)
T 2olj_A 153 AHAYP-----DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG-FAREVG 226 (263)
T ss_dssp TTSCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHC
T ss_pred hcCCh-----hhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHhC
Confidence 77765 489999999999999999999999999999999999999999999999878999999999975 477899
Q ss_pred CEEEEEeCCEEEEecChhHHH
Q 044602 302 DKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 302 D~v~~L~~G~iv~~G~~~~~~ 322 (674)
|++++|++|++++.|+++++.
T Consensus 227 d~v~~l~~G~i~~~g~~~~~~ 247 (263)
T 2olj_A 227 DRVLFMDGGYIIEEGKPEDLF 247 (263)
T ss_dssp SEEEEEETTEEEEEECHHHHH
T ss_pred CEEEEEECCEEEEECCHHHHH
Confidence 999999999999999998874
No 5
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=3e-49 Score=426.65 Aligned_cols=218 Identities=29% Similarity=0.470 Sum_probs=197.0
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|. .+.+|+||||++++||+++|+||||||||||||+|+|+.+
T Consensus 3 ~l~~~~l~~~yg---------------------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~- 54 (381)
T 3rlf_A 3 SVQLQNVTKAWG---------------------------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET- 54 (381)
T ss_dssp CEEEEEEEEEET---------------------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-
T ss_pred EEEEEeEEEEEC---------------------------CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC-
Confidence 389999999873 2569999999999999999999999999999999999884
Q ss_pred CCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 044602 149 DVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRV 226 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 226 (674)
+++|+|.++|+++.. ..++.+|||+|++.+||++||+||+.|+...+ ..++++.+++++++++.+||.+..++++
T Consensus 55 p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~p 131 (381)
T 3rlf_A 55 ITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRKP 131 (381)
T ss_dssp CSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTCCG
T ss_pred CCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCh
Confidence 569999999999863 34578999999999999999999999997654 3567777889999999999998887765
Q ss_pred cCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEE
Q 044602 227 GGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLL 305 (674)
Q Consensus 227 g~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~ 305 (674)
.+|||||||||+|||||+.+|++|||||||||||+..+.++.+.|+++.++ |+|+|++|||+. ++..+||||+
T Consensus 132 -----~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~ 205 (381)
T 3rlf_A 132 -----KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIV 205 (381)
T ss_dssp -----GGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEE
T ss_pred -----hHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEE
Confidence 589999999999999999999999999999999999999999999999765 999999999975 5889999999
Q ss_pred EEeCCEEEEecChhHHHH
Q 044602 306 LISEGYPVYYGKARESME 323 (674)
Q Consensus 306 ~L~~G~iv~~G~~~~~~~ 323 (674)
+|++|+++..|+++++.+
T Consensus 206 vl~~G~i~~~g~~~~l~~ 223 (381)
T 3rlf_A 206 VLDAGRVAQVGKPLELYH 223 (381)
T ss_dssp EEETTEEEEEECHHHHHH
T ss_pred EEECCEEEEEeCHHHHHh
Confidence 999999999999999853
No 6
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=3.1e-49 Score=409.13 Aligned_cols=217 Identities=25% Similarity=0.416 Sum_probs=191.6
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|. .+++|+||||++++||+++|+||||||||||+|+|+|+++
T Consensus 6 ~l~i~~l~~~y~---------------------------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~- 57 (262)
T 1b0u_A 6 KLHVIDLHKRYG---------------------------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK- 57 (262)
T ss_dssp CEEEEEEEEEET---------------------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-
T ss_pred eEEEeeEEEEEC---------------------------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-
Confidence 489999999773 2469999999999999999999999999999999999884
Q ss_pred CCccEEEECCEeCC-----------------hhccccEEEEccCCCCCCCCCHHHHHHHHH-hhcCCCCCCHHHHHHHHH
Q 044602 149 DVKGNITYNDIPYN-----------------PALKRRIGFVTQDDVLLPQLTVEETLVFAA-FLRLPGNMNRQQKYARVQ 210 (674)
Q Consensus 149 ~~~G~I~~~g~~~~-----------------~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~-~~~~~~~~~~~~~~~~v~ 210 (674)
+.+|+|.++|+++. ...++.+|||+|++.+++.+||+||+.++. ... ...+++..++++
T Consensus 58 p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~ 134 (262)
T 1b0u_A 58 PSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERAL 134 (262)
T ss_dssp CSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHH
T ss_pred CCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHH
Confidence 56999999999875 124567999999999999999999999964 322 234455567889
Q ss_pred HHHHHcCCCcc-ccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEE
Q 044602 211 MILKELGLERC-RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITT 289 (674)
Q Consensus 211 ~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~ 289 (674)
++++.+||.+. .++.+ .+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++
T Consensus 135 ~~l~~~~L~~~~~~~~~-----~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~v 209 (262)
T 1b0u_A 135 KYLAKVGIDERAQGKYP-----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVV 209 (262)
T ss_dssp HHHHHTTCCHHHHTSCG-----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHcCCCchhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 99999999887 77765 4899999999999999999999999999999999999999999999998789999999
Q ss_pred ecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 290 IHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 290 ~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
||++. ++.++||++++|++|++++.|+++++.
T Consensus 210 tHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 210 THEMG-FARHVSSHVIFLHQGKIEEEGDPEQVF 241 (262)
T ss_dssp CSCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred eCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99975 477899999999999999999998874
No 7
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=2.2e-49 Score=424.97 Aligned_cols=217 Identities=25% Similarity=0.425 Sum_probs=192.7
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|. .+.+|+||||++++||+++|+||||||||||||+|+|+.+
T Consensus 4 ~l~i~~ls~~y~---------------------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~- 55 (359)
T 3fvq_A 4 ALHIGHLSKSFQ---------------------------NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ- 55 (359)
T ss_dssp CEEEEEEEEEET---------------------------TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC-
T ss_pred EEEEEeEEEEEC---------------------------CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC-
Confidence 489999999773 2569999999999999999999999999999999999884
Q ss_pred CCccEEEECCEeC----Ch--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccc
Q 044602 149 DVKGNITYNDIPY----NP--ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCR 222 (674)
Q Consensus 149 ~~~G~I~~~g~~~----~~--~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 222 (674)
+++|+|.++|+++ .. ..++.+|||+|++.+||++||+||+.|+...+ ...+++.+++++++++.+||.+..
T Consensus 56 p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~ 132 (359)
T 3fvq_A 56 PDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLELTGISELA 132 (359)
T ss_dssp CSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS---SCCSHHHHHHHHHHHHHHTCGGGT
T ss_pred CCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCCchHh
Confidence 5699999999987 21 34678999999999999999999999986443 234556678899999999999888
Q ss_pred cccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEecCCchHHHhhc
Q 044602 223 HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVA-KAGRTVITTIHQPSSRMFHMF 301 (674)
Q Consensus 223 ~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~~~H~~~~~i~~~~ 301 (674)
++++ .+|||||||||+|||||+.+|++|||||||||||+..+..+.+.|+++. +.|+|+|++|||.. ++..+|
T Consensus 133 ~r~~-----~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~a 206 (359)
T 3fvq_A 133 GRYP-----HELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYA 206 (359)
T ss_dssp TSCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHC
T ss_pred cCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHC
Confidence 8765 4899999999999999999999999999999999999999999888765 46999999999975 578999
Q ss_pred CEEEEEeCCEEEEecChhHHH
Q 044602 302 DKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 302 D~v~~L~~G~iv~~G~~~~~~ 322 (674)
|||++|++|+++..|+++++.
T Consensus 207 Dri~vl~~G~i~~~g~~~el~ 227 (359)
T 3fvq_A 207 DRIAVMKQGRILQTASPHELY 227 (359)
T ss_dssp SEEEEEETTEEEEEECHHHHH
T ss_pred CEEEEEECCEEEEEeCHHHHH
Confidence 999999999999999999875
No 8
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.1e-48 Score=403.49 Aligned_cols=218 Identities=28% Similarity=0.396 Sum_probs=193.0
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|. .+++|+|+||++++||+++|+||||||||||+|+|+|+++
T Consensus 15 ~l~i~~l~~~y~---------------------------~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~- 66 (256)
T 1vpl_A 15 AVVVKDLRKRIG---------------------------KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK- 66 (256)
T ss_dssp CEEEEEEEEEET---------------------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-
T ss_pred eEEEEEEEEEEC---------------------------CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-
Confidence 489999999773 2469999999999999999999999999999999999874
Q ss_pred CCccEEEECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccc
Q 044602 149 DVKGNITYNDIPYNP---ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTR 225 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~---~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 225 (674)
+.+|+|.++|+++.. ..++.+|||+|++.+++.+||+||+.+..... ....++..++++++++.+||.+..+++
T Consensus 67 p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~ 143 (256)
T 1vpl_A 67 PSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDR 143 (256)
T ss_dssp CSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSB
T ss_pred CCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHCCCchHhcCC
Confidence 569999999998753 35678999999999999999999999976432 123444556789999999999888876
Q ss_pred ccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEE
Q 044602 226 VGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLL 305 (674)
Q Consensus 226 vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 305 (674)
+ .+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++. ++..+||+++
T Consensus 144 ~-----~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~~d~v~ 217 (256)
T 1vpl_A 144 V-----STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIA 217 (256)
T ss_dssp G-----GGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEE
T ss_pred h-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHHCCEEE
Confidence 5 489999999999999999999999999999999999999999999999878999999999975 4677899999
Q ss_pred EEeCCEEEEecChhHHHH
Q 044602 306 LISEGYPVYYGKARESME 323 (674)
Q Consensus 306 ~L~~G~iv~~G~~~~~~~ 323 (674)
+|++|++++.|+++++.+
T Consensus 218 ~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 218 LIHNGTIVETGTVEELKE 235 (256)
T ss_dssp EEETTEEEEEEEHHHHHH
T ss_pred EEECCEEEEecCHHHHHH
Confidence 999999999999998754
No 9
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1.1e-48 Score=395.92 Aligned_cols=212 Identities=29% Similarity=0.469 Sum_probs=186.7
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|. .+++|+|+||++++||+++|+||||||||||+|+|+|+++
T Consensus 4 ~l~~~~l~~~y~---------------------------~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~- 55 (224)
T 2pcj_A 4 ILRAENIKKVIR---------------------------GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA- 55 (224)
T ss_dssp EEEEEEEEEEET---------------------------TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC-
T ss_pred EEEEEeEEEEEC---------------------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-
Confidence 489999999773 2469999999999999999999999999999999999884
Q ss_pred CCccEEEECCEeCCh-------hcc-ccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc
Q 044602 149 DVKGNITYNDIPYNP-------ALK-RRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER 220 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~-------~~~-~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 220 (674)
+.+|+|.++|+++.. .++ +.+|||+|++.+++.+||+||+.++.... ...+++..++++++++.+||.+
T Consensus 56 p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~ 132 (224)
T 2pcj_A 56 PTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM---GKPKKEAKERGEYLLSELGLGD 132 (224)
T ss_dssp CSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTT
T ss_pred CCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCch
Confidence 569999999998742 123 67999999999999999999999976543 2344555678899999999998
Q ss_pred cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhh
Q 044602 221 CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHM 300 (674)
Q Consensus 221 ~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~ 300 (674)
..++++ .+|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++|||+.. + +.
T Consensus 133 ~~~~~~-----~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~-~-~~ 205 (224)
T 2pcj_A 133 KLSRKP-----YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHEREL-A-EL 205 (224)
T ss_dssp CTTCCG-----GGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH-H-TT
T ss_pred hhhCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH-H-Hh
Confidence 887765 4899999999999999999999999999999999999999999999998779999999999753 4 88
Q ss_pred cCEEEEEeCCEEEEecCh
Q 044602 301 FDKLLLISEGYPVYYGKA 318 (674)
Q Consensus 301 ~D~v~~L~~G~iv~~G~~ 318 (674)
||++++|++|++++.|+.
T Consensus 206 ~d~v~~l~~G~i~~~g~~ 223 (224)
T 2pcj_A 206 THRTLEMKDGKVVGEITR 223 (224)
T ss_dssp SSEEEEEETTEEEEEEEC
T ss_pred CCEEEEEECCEEEEEeee
Confidence 999999999999999863
No 10
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1.4e-48 Score=418.74 Aligned_cols=219 Identities=26% Similarity=0.456 Sum_probs=195.4
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++||+++|+ +.+++|+|+||++++||+++|+||||||||||||+|+|+.+
T Consensus 13 ~~l~~~~l~~~y~--------------------------g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 13 MTIEFVGVEKIYP--------------------------GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp EEEEEEEEEECCT--------------------------TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred ceEEEEEEEEEEc--------------------------CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4689999998652 22569999999999999999999999999999999999884
Q ss_pred CCCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccc
Q 044602 148 DDVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTR 225 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 225 (674)
+++|+|.++|+++.. ..++.+|||+|++.+||++||+||+.|+...+ ..++++.+++++++++.+||.+..+++
T Consensus 67 -p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~ 142 (355)
T 1z47_A 67 -PTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANRF 142 (355)
T ss_dssp -CSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTSC
T ss_pred -CCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCC
Confidence 569999999999853 35678999999999999999999999987653 235566678899999999999888876
Q ss_pred ccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEE
Q 044602 226 VGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKL 304 (674)
Q Consensus 226 vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v 304 (674)
+ .+|||||||||+|||||+.+|++|||||||||||+.++..+.+.|+++.++ |+|+|++|||+. ++..+||+|
T Consensus 143 ~-----~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri 216 (355)
T 1z47_A 143 P-----HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRV 216 (355)
T ss_dssp G-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEE
T ss_pred c-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEE
Confidence 5 489999999999999999999999999999999999999999999999765 999999999975 578899999
Q ss_pred EEEeCCEEEEecChhHHH
Q 044602 305 LLISEGYPVYYGKARESM 322 (674)
Q Consensus 305 ~~L~~G~iv~~G~~~~~~ 322 (674)
++|++|+++..|+++++.
T Consensus 217 ~vl~~G~i~~~g~~~~l~ 234 (355)
T 1z47_A 217 LVLHEGNVEQFGTPEEVY 234 (355)
T ss_dssp EEEETTEEEEEECHHHHH
T ss_pred EEEECCEEEEEcCHHHHH
Confidence 999999999999999874
No 11
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1.1e-48 Score=404.04 Aligned_cols=218 Identities=22% Similarity=0.376 Sum_probs=189.9
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|. .+++|+||||++++||+++|+||||||||||+|+|+|+++
T Consensus 7 ~l~i~~l~~~y~---------------------------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~- 58 (257)
T 1g6h_A 7 ILRTENIVKYFG---------------------------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK- 58 (257)
T ss_dssp EEEEEEEEEEET---------------------------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC-
T ss_pred EEEEeeeEEEEC---------------------------CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC-
Confidence 589999999873 2469999999999999999999999999999999999884
Q ss_pred CCccEEEECCEeCCh-----hccccEEEEccCCCCCCCCCHHHHHHHHHhh-cCCC---------CCCHHHHHHHHHHHH
Q 044602 149 DVKGNITYNDIPYNP-----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFL-RLPG---------NMNRQQKYARVQMIL 213 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~-~~~~---------~~~~~~~~~~v~~~l 213 (674)
+.+|+|.++|+++.. ..++.+|||+|++.+++.+||+||+.++... .... ...+++..+++++++
T Consensus 59 p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 138 (257)
T 1g6h_A 59 ADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKIL 138 (257)
T ss_dssp CSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHH
T ss_pred CCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHH
Confidence 569999999998743 2356799999999999999999999987532 1110 012234456789999
Q ss_pred HHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCC
Q 044602 214 KELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQP 293 (674)
Q Consensus 214 ~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 293 (674)
+.+||.+..++.++ +|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++
T Consensus 139 ~~~~l~~~~~~~~~-----~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~ 213 (257)
T 1g6h_A 139 EFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRL 213 (257)
T ss_dssp HHTTCGGGTTSBGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCC
T ss_pred HHcCCchhhCCCch-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH
Confidence 99999988887654 8999999999999999999999999999999999999999999999987899999999998
Q ss_pred chHHHhhcCEEEEEeCCEEEEecChhH
Q 044602 294 SSRMFHMFDKLLLISEGYPVYYGKARE 320 (674)
Q Consensus 294 ~~~i~~~~D~v~~L~~G~iv~~G~~~~ 320 (674)
.. +.++||++++|++|++++.|++++
T Consensus 214 ~~-~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 214 DI-VLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp ST-TGGGCSEEEEEETTEEEEEEESHH
T ss_pred HH-HHHhCCEEEEEECCEEEEEeCHHH
Confidence 64 678999999999999999999988
No 12
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.9e-48 Score=418.76 Aligned_cols=218 Identities=26% Similarity=0.451 Sum_probs=193.2
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|. .+++|+|+||++++||+++|+||||||||||||+|+|+.+
T Consensus 3 ~l~~~~l~~~y~---------------------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~- 54 (359)
T 2yyz_A 3 SIRVVNLKKYFG---------------------------KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK- 54 (359)
T ss_dssp CEEEEEEEEEET---------------------------TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC-
T ss_pred EEEEEEEEEEEC---------------------------CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC-
Confidence 378999998773 2469999999999999999999999999999999999884
Q ss_pred CCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 044602 149 DVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRV 226 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 226 (674)
+++|+|.++|+++.. ..++.+|||+|++.+||++||+||+.|+...+ ..++++.+++++++++.+||.+..++++
T Consensus 55 p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~ 131 (359)
T 2yyz_A 55 PTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRKP 131 (359)
T ss_dssp CSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSCG
T ss_pred CCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCCh
Confidence 569999999999853 34678999999999999999999999986432 2344455678999999999998888765
Q ss_pred cCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEE
Q 044602 227 GGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLL 305 (674)
Q Consensus 227 g~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~ 305 (674)
.+|||||||||+|||||+.+|++|||||||||||+.++..+.+.|+++.++ |+|+|++|||.. ++..+||+|+
T Consensus 132 -----~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~ 205 (359)
T 2yyz_A 132 -----TQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIA 205 (359)
T ss_dssp -----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEE
T ss_pred -----hhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEE
Confidence 489999999999999999999999999999999999999999999999764 999999999975 5788999999
Q ss_pred EEeCCEEEEecChhHHHH
Q 044602 306 LISEGYPVYYGKARESME 323 (674)
Q Consensus 306 ~L~~G~iv~~G~~~~~~~ 323 (674)
+|++|+++..|+++++.+
T Consensus 206 vl~~G~i~~~g~~~~l~~ 223 (359)
T 2yyz_A 206 VFNQGKLVQYGTPDEVYD 223 (359)
T ss_dssp EEETTEEEEEECHHHHHH
T ss_pred EEECCEEEEeCCHHHHHh
Confidence 999999999999998853
No 13
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.4e-48 Score=418.39 Aligned_cols=217 Identities=30% Similarity=0.460 Sum_probs=193.9
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|. .+++|+|+||++++||+++|+||||||||||||+|+|+.+
T Consensus 3 ~l~~~~l~~~y~---------------------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~- 54 (362)
T 2it1_A 3 EIKLENIVKKFG---------------------------NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK- 54 (362)
T ss_dssp CEEEEEEEEESS---------------------------SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-
T ss_pred EEEEEeEEEEEC---------------------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC-
Confidence 378999998662 2569999999999999999999999999999999999884
Q ss_pred CCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 044602 149 DVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRV 226 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 226 (674)
+++|+|.++|+++.. ..++.+|||+|++.+||++||+||+.|+...+ ..++++.+++++++++.+||.+..++++
T Consensus 55 p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~ 131 (362)
T 2it1_A 55 PTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLNRYP 131 (362)
T ss_dssp CSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCG
T ss_pred CCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhhCCh
Confidence 569999999999853 34578999999999999999999999987553 2355666788999999999998888765
Q ss_pred cCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEE
Q 044602 227 GGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLL 305 (674)
Q Consensus 227 g~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~ 305 (674)
.+|||||||||+|||||+.+|++|||||||||||+.++..+.+.|+++.++ |+|+|++|||+. ++..+||+|+
T Consensus 132 -----~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~ 205 (362)
T 2it1_A 132 -----WQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIA 205 (362)
T ss_dssp -----GGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEE
T ss_pred -----hhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEE
Confidence 489999999999999999999999999999999999999999999999764 999999999975 5788999999
Q ss_pred EEeCCEEEEecChhHHH
Q 044602 306 LISEGYPVYYGKARESM 322 (674)
Q Consensus 306 ~L~~G~iv~~G~~~~~~ 322 (674)
+|++|+++..|+++++.
T Consensus 206 vl~~G~i~~~g~~~~~~ 222 (362)
T 2it1_A 206 VIREGEILQVGTPDEVY 222 (362)
T ss_dssp EEETTEEEEEECHHHHH
T ss_pred EEECCEEEEEcCHHHHH
Confidence 99999999999999885
No 14
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=1e-48 Score=412.72 Aligned_cols=215 Identities=30% Similarity=0.482 Sum_probs=181.7
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++||+|+|+. .+.+|+||||++++||++||+||||||||||+|+|+|++
T Consensus 52 ~~i~~~~vs~~y~~--------------------------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~- 104 (306)
T 3nh6_A 52 GRIEFENVHFSYAD--------------------------GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFY- 104 (306)
T ss_dssp CCEEEEEEEEESST--------------------------TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSS-
T ss_pred CeEEEEEEEEEcCC--------------------------CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCC-
Confidence 46999999998741 246999999999999999999999999999999999987
Q ss_pred CCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC-----
Q 044602 148 DDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL----- 218 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL----- 218 (674)
++.+|+|.+||+++.. .+|+.||||+|++.+|+. ||+|||.++... ... ++++++++..++
T Consensus 105 ~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~-Tv~eNi~~~~~~-----~~~----~~~~~~~~~~~l~~~i~ 174 (306)
T 3nh6_A 105 DISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFND-TIADNIRYGRVT-----AGN----DEVEAAAQAAGIHDAIM 174 (306)
T ss_dssp CCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSE-EHHHHHHTTSTT-----CCH----HHHHHHHHHHTCHHHHH
T ss_pred CCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcc-cHHHHHHhhccc-----CCH----HHHHHHHHHhCcHHHHH
Confidence 4569999999999863 467899999999999975 999999987421 122 223334444333
Q ss_pred --CccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchH
Q 044602 219 --ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSR 296 (674)
Q Consensus 219 --~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~ 296 (674)
++..++.+|+. ..+|||||||||+|||||+.+|+|||||||||+||+.++..|++.|+++.+ ++|+|++||+++.
T Consensus 175 ~lp~gl~t~~~~~-g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~- 251 (306)
T 3nh6_A 175 AFPEGYRTQVGER-GLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLST- 251 (306)
T ss_dssp HSTTGGGCEESTT-SBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHHH-
T ss_pred hccchhhhHhcCC-cCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChHH-
Confidence 44667777754 457999999999999999999999999999999999999999999999865 7999999999865
Q ss_pred HHhhcCEEEEEeCCEEEEecChhHHHH
Q 044602 297 MFHMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 297 i~~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
+ ..||+|++|++|++++.|+++++++
T Consensus 252 ~-~~aD~i~vl~~G~iv~~G~~~el~~ 277 (306)
T 3nh6_A 252 V-VNADQILVIKDGCIVERGRHEALLS 277 (306)
T ss_dssp H-HTCSEEEEEETTEEEEEECHHHHHH
T ss_pred H-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 4 4599999999999999999999864
No 15
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=5.7e-48 Score=417.48 Aligned_cols=217 Identities=29% Similarity=0.441 Sum_probs=193.7
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|. .+++|+|+||++++||+++|+||||||||||||+|+|+.+
T Consensus 3 ~l~~~~l~~~y~---------------------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~- 54 (372)
T 1g29_1 3 GVRLVDVWKVFG---------------------------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE- 54 (372)
T ss_dssp EEEEEEEEEEET---------------------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC-
T ss_pred EEEEEeEEEEEC---------------------------CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC-
Confidence 488999998773 2469999999999999999999999999999999999884
Q ss_pred CCccEEEECCEeCCh--------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc
Q 044602 149 DVKGNITYNDIPYNP--------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER 220 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~--------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 220 (674)
+++|+|.++|+++.. ..++.+|||+|+..+||++||+||+.|+...+ ..++++.+++++++++.+||.+
T Consensus 55 p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~ 131 (372)
T 1g29_1 55 PSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTE 131 (372)
T ss_dssp CSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGG
T ss_pred CCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCch
Confidence 569999999988632 23578999999999999999999999987653 2355666788999999999998
Q ss_pred cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHh
Q 044602 221 CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFH 299 (674)
Q Consensus 221 ~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~ 299 (674)
..++++ .+|||||||||+|||||+.+|++|||||||||||+.++..+.+.|+++.++ |+|+|++|||+. ++..
T Consensus 132 ~~~r~~-----~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~ 205 (372)
T 1g29_1 132 LLNRKP-----RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMT 205 (372)
T ss_dssp GTTCCG-----GGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHH
T ss_pred HhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHH
Confidence 888765 489999999999999999999999999999999999999999999999765 999999999975 5788
Q ss_pred hcCEEEEEeCCEEEEecChhHHH
Q 044602 300 MFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 300 ~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+||+|++|++|+++..|+++++.
T Consensus 206 ~adri~vl~~G~i~~~g~~~~l~ 228 (372)
T 1g29_1 206 MGDRIAVMNRGVLQQVGSPDEVY 228 (372)
T ss_dssp HCSEEEEEETTEEEEEECHHHHH
T ss_pred hCCEEEEEeCCEEEEeCCHHHHH
Confidence 99999999999999999999885
No 16
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=2.1e-48 Score=403.51 Aligned_cols=216 Identities=24% Similarity=0.400 Sum_probs=190.3
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++||+++|. .+++|+||||++++||+++|+||||||||||+|+|+|+++
T Consensus 10 ~~l~~~~l~~~~~---------------------------~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 10 ALLEASHLHYHVQ---------------------------QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp CEEEEEEEEEEET---------------------------TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred ceEEEEeEEEEeC---------------------------CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3589999999773 2569999999999999999999999999999999999874
Q ss_pred CCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 044602 148 DDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRH 223 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 223 (674)
+.+|+|.++|+++.. ..++.++|++|++.+++.+||+||+.++.... ...+..++++++++.+||.+..+
T Consensus 63 -p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~ 136 (266)
T 4g1u_C 63 -PSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY-----GGSQDRQALQQVMAQTDCLALAQ 136 (266)
T ss_dssp -CSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS-----CSTTHHHHHHHHHHHTTCSTTTT
T ss_pred -CCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc-----CcHHHHHHHHHHHHHcCChhHhc
Confidence 569999999999853 35667999999998888899999999976432 12234567899999999998888
Q ss_pred ccccCCccCccCHHHHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchH
Q 044602 224 TRVGGGFIKGISGGERKRTSIGYEILV------DPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSR 296 (674)
Q Consensus 224 ~~vg~~~~~~LSgGerqRv~iA~aL~~------~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~ 296 (674)
+.+ .+|||||||||+|||||+. +|++|||||||+|||+.++..+++.|++++++ |+|||++|||+. +
T Consensus 137 ~~~-----~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~ 210 (266)
T 4g1u_C 137 RDY-----RVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-L 210 (266)
T ss_dssp SBG-----GGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-H
T ss_pred CCc-----ccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-H
Confidence 765 4899999999999999999 99999999999999999999999999999765 579999999975 5
Q ss_pred HHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 297 MFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 297 i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+.++||||++|++|++++.|+++++.
T Consensus 211 ~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 211 AALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp HHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred HHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 77899999999999999999999874
No 17
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2.8e-48 Score=396.95 Aligned_cols=216 Identities=26% Similarity=0.431 Sum_probs=187.6
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|. .+++|+|+||++++||+++|+||||||||||+|+|+|+++
T Consensus 6 ~l~~~~l~~~y~---------------------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~- 57 (240)
T 1ji0_A 6 VLEVQSLHVYYG---------------------------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR- 57 (240)
T ss_dssp EEEEEEEEEEET---------------------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC-
T ss_pred eEEEEeEEEEEC---------------------------CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-
Confidence 589999999773 2469999999999999999999999999999999999874
Q ss_pred CCccEEEECCEeCCh----h-ccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-CCccc
Q 044602 149 DVKGNITYNDIPYNP----A-LKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG-LERCR 222 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~----~-~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~ 222 (674)
+.+|+|.++|+++.. . .++.+|||+|++.+++.+||+||+.++.... ..+++..++++++++.++ |.+..
T Consensus 58 p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~ 133 (240)
T 1ji0_A 58 AQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERL 133 (240)
T ss_dssp CSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTT
T ss_pred CCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC----CCHHHHHHHHHHHHHHcccHhhHh
Confidence 569999999998753 1 2456999999999999999999999874211 122234567788999994 88777
Q ss_pred cccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcC
Q 044602 223 HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFD 302 (674)
Q Consensus 223 ~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 302 (674)
++.+ .+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++. ++.++||
T Consensus 134 ~~~~-----~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~-~~~~~~d 207 (240)
T 1ji0_A 134 KQLG-----GTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAH 207 (240)
T ss_dssp TSBS-----SSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCS
T ss_pred cCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCC
Confidence 7654 489999999999999999999999999999999999999999999999878999999999975 4778999
Q ss_pred EEEEEeCCEEEEecChhHHH
Q 044602 303 KLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 303 ~v~~L~~G~iv~~G~~~~~~ 322 (674)
++++|++|++++.|+++++.
T Consensus 208 ~v~~l~~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 208 YGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp EEEEEETTEEEEEEEHHHHH
T ss_pred EEEEEECCEEEEEcCHHHHh
Confidence 99999999999999998764
No 18
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=2.8e-48 Score=417.39 Aligned_cols=217 Identities=28% Similarity=0.453 Sum_probs=193.3
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhccccccccccc--ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKH--ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++++||+++|. .++ +|+|+||++++||+++|+||||||||||||+|+|+.
T Consensus 3 ~l~i~~l~~~y~---------------------------~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 3 RIIVKNVSKVFK---------------------------KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CEEEEEEEEEEG---------------------------GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEEeEEEEEC---------------------------CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 388999999773 245 999999999999999999999999999999999987
Q ss_pred CCCCccEEEECCEeCCh-------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 044602 147 TDDVKGNITYNDIPYNP-------ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE 219 (674)
Q Consensus 147 ~~~~~G~I~~~g~~~~~-------~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 219 (674)
+ +++|+|.++|+++.. ..++.+|||+|++.+||++||+||+.|+...+ ..++++..++++++++.+||.
T Consensus 56 ~-p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~ 131 (353)
T 1oxx_K 56 V-PSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIH 131 (353)
T ss_dssp C-CSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCG
T ss_pred C-CCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCc
Confidence 4 569999999988632 34678999999999999999999999986443 245566678899999999999
Q ss_pred ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHH
Q 044602 220 RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMF 298 (674)
Q Consensus 220 ~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~ 298 (674)
+..++++ .+|||||||||+|||||+.+|++|||||||||||+.++..+.+.|+++.++ |+|+|++|||+. ++.
T Consensus 132 ~~~~~~~-----~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~ 205 (353)
T 1oxx_K 132 HVLNHFP-----RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIF 205 (353)
T ss_dssp GGTTSCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHH
T ss_pred hHhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHH
Confidence 8888765 489999999999999999999999999999999999999999999999764 999999999975 578
Q ss_pred hhcCEEEEEeCCEEEEecChhHHH
Q 044602 299 HMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 299 ~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
.+||+|++|++|+++..|+++++.
T Consensus 206 ~~adri~vl~~G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 206 AIADRVGVLVKGKLVQVGKPEDLY 229 (353)
T ss_dssp HHCSEEEEEETTEEEEEECHHHHH
T ss_pred HhCCEEEEEECCEEEEEcCHHHHH
Confidence 899999999999999999999874
No 19
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=4e-48 Score=418.06 Aligned_cols=217 Identities=27% Similarity=0.421 Sum_probs=187.5
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|. .+.+|+|+||++++||+++|+||||||||||||+|+|+.+
T Consensus 11 ~l~~~~l~~~y~---------------------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~- 62 (372)
T 1v43_A 11 EVKLENLTKRFG---------------------------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE- 62 (372)
T ss_dssp CEEEEEEEEEET---------------------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-
T ss_pred eEEEEEEEEEEC---------------------------CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC-
Confidence 389999999773 2468999999999999999999999999999999999874
Q ss_pred CCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 044602 149 DVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRV 226 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 226 (674)
+++|+|.++|+++.. ..++.+|||+|++.+||++||+||+.|+...+ ..++++.+++++++++.+||.+..++++
T Consensus 63 p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~ 139 (372)
T 1v43_A 63 PTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYP 139 (372)
T ss_dssp CSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCT
T ss_pred CCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcCCh
Confidence 569999999999853 34578999999999999999999999975432 2456666788999999999998887765
Q ss_pred cCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEE
Q 044602 227 GGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLL 305 (674)
Q Consensus 227 g~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~ 305 (674)
.+|||||||||+|||||+.+|++|||||||||||+.++..+.+.|+++.++ |+|+|++|||.. ++..+||+|+
T Consensus 140 -----~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~ 213 (372)
T 1v43_A 140 -----AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIA 213 (372)
T ss_dssp -----TTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEE
T ss_pred -----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEE
Confidence 589999999999999999999999999999999999999999999999765 999999999975 5788999999
Q ss_pred EEeCCEEEEecChhHHH
Q 044602 306 LISEGYPVYYGKARESM 322 (674)
Q Consensus 306 ~L~~G~iv~~G~~~~~~ 322 (674)
+|++|+++..|+++++.
T Consensus 214 vl~~G~i~~~g~~~~l~ 230 (372)
T 1v43_A 214 VMNRGQLLQIGSPTEVY 230 (372)
T ss_dssp EEETTEEEEEECHHHHH
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999999885
No 20
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=1e-47 Score=392.50 Aligned_cols=199 Identities=27% Similarity=0.478 Sum_probs=176.6
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHH
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEETL 188 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e~l 188 (674)
+|+|+|+++++ |+++|+||||||||||+|+|+|+++ +.+|+|.++|+++.. ..++.+|||+|++.+++.+||+||+
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl 91 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK-PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNI 91 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC-CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHH
Confidence 49999999999 9999999999999999999999884 569999999998753 3467899999999999999999999
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTS 268 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~ 268 (674)
.++...+ ......++++++++.+||.+..+++++ +|||||||||+|||||+.+|++|+|||||+|||+.+
T Consensus 92 ~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~ 161 (240)
T 2onk_A 92 AYGLRNV-----ERVERDRRVREMAEKLGIAHLLDRKPA-----RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKT 161 (240)
T ss_dssp HTTCTTS-----CHHHHHHHHHHHHHTTTCTTTTTCCGG-----GSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHH
T ss_pred HHHHHHc-----CCchHHHHHHHHHHHcCCHHHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 9864321 122235678999999999988777654 899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 269 ANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 269 ~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+..+++.|++++++ |+|||++||++. ++.++||++++|++|++++.|+++++.
T Consensus 162 ~~~~~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 215 (240)
T 2onk_A 162 KGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLNGRIVEKGKLKELF 215 (240)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999764 999999999975 477899999999999999999998874
No 21
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=1e-47 Score=411.66 Aligned_cols=199 Identities=27% Similarity=0.455 Sum_probs=179.3
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHH
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEETL 188 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e~l 188 (674)
+|+|+||++++||+++|+||||||||||||+|+|+.+ +++|+|.++|+++.. ..++.+|||+|++.+||++||+||+
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl 93 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV-PDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNL 93 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC-CSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC-CCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHH
Confidence 9999999999999999999999999999999999884 569999999999853 3467899999999999999999999
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTS 268 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~ 268 (674)
.|+...+. ..+. ++++++++.+||.+..++++ .+|||||||||+|||||+.+|++|||||||||||+.+
T Consensus 94 ~~~~~~~~---~~~~---~~v~~~l~~~~L~~~~~~~~-----~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~ 162 (348)
T 3d31_A 94 EFGMRMKK---IKDP---KRVLDTARDLKIEHLLDRNP-----LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRT 162 (348)
T ss_dssp HHHHHHHC---CCCH---HHHHHHHHHTTCTTTTTSCG-----GGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHH
T ss_pred HHHHHHcC---CCHH---HHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHH
Confidence 99875431 1112 67899999999998888765 4899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-CCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 269 ANKLIQVLQKVAK-AGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 269 ~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+..+.+.|+++.+ .|+|+|++|||+. ++..+||+|++|++|+++..|+++++.
T Consensus 163 ~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 163 QENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMDGKLIQVGKPEEIF 216 (348)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999976 4999999999975 578899999999999999999999874
No 22
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=2.5e-47 Score=395.76 Aligned_cols=222 Identities=27% Similarity=0.409 Sum_probs=188.7
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|..+. ...+++|+|+||++++||+++|+||||||||||+|+|+|++ +
T Consensus 2 ~l~~~~l~~~y~~~~----------------------~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~-~ 58 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGT----------------------PLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLI-E 58 (266)
T ss_dssp CEEEEEEEEEESTTS----------------------TTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS-C
T ss_pred EEEEEEEEEEecCCC----------------------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-C
Confidence 478999999884100 00146999999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEeCCh-hccccEEEEccCC-CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC--ccccc
Q 044602 149 DVKGNITYNDIPYNP-ALKRRIGFVTQDD-VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE--RCRHT 224 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~-~~~~~igyv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~ 224 (674)
+.+|+|.++|+++.. .+++.+|||+|++ .+++.+||+||+.++.... .++++..++++++++.+||. +..++
T Consensus 59 p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~----~~~~~~~~~~~~~l~~~gl~~~~~~~~ 134 (266)
T 2yz2_A 59 PTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF----YPDRDPVPLVKKAMEFVGLDFDSFKDR 134 (266)
T ss_dssp CSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT----CTTSCSHHHHHHHHHHTTCCHHHHTTC
T ss_pred CCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhc----CCHHHHHHHHHHHHHHcCcCCcccccC
Confidence 569999999998864 4567899999995 4666789999999875321 11122345788999999998 87777
Q ss_pred cccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEE
Q 044602 225 RVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKL 304 (674)
Q Consensus 225 ~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v 304 (674)
++ .+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++.. +..+||++
T Consensus 135 ~~-----~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~-~~~~~d~v 208 (266)
T 2yz2_A 135 VP-----FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIET-VINHVDRV 208 (266)
T ss_dssp CG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTT-TGGGCSEE
T ss_pred Ch-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEE
Confidence 65 4899999999999999999999999999999999999999999999998779999999999864 66789999
Q ss_pred EEEeCCEEEEecChhHHHH
Q 044602 305 LLISEGYPVYYGKARESME 323 (674)
Q Consensus 305 ~~L~~G~iv~~G~~~~~~~ 323 (674)
++|++|++++.|+++++.+
T Consensus 209 ~~l~~G~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 209 VVLEKGKKVFDGTRMEFLE 227 (266)
T ss_dssp EEEETTEEEEEEEHHHHHH
T ss_pred EEEECCEEEEeCCHHHHhc
Confidence 9999999999999988754
No 23
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=3e-47 Score=391.68 Aligned_cols=219 Identities=25% Similarity=0.330 Sum_probs=180.5
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC-C
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL-T 147 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~-~ 147 (674)
.++++||+++|. .+++|+|+||++++||+++|+||||||||||+|+|+|+. .
T Consensus 3 ~l~~~~l~~~y~---------------------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~ 55 (250)
T 2d2e_A 3 QLEIRDLWASID---------------------------GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEY 55 (250)
T ss_dssp EEEEEEEEEEET---------------------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTC
T ss_pred eEEEEeEEEEEC---------------------------CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 489999999773 246999999999999999999999999999999999972 2
Q ss_pred CCCccEEEECCEeCCh----h-ccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC-Ccc
Q 044602 148 DDVKGNITYNDIPYNP----A-LKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL-ERC 221 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~----~-~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-~~~ 221 (674)
++.+|+|.++|+++.. . .++.++||+|++.+++.+||+||+.++............+..++++++++.+|| .+.
T Consensus 56 ~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~ 135 (250)
T 2d2e_A 56 TVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESY 135 (250)
T ss_dssp EEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGG
T ss_pred CCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhH
Confidence 4569999999998753 1 244699999999999999999999987532111112334445678999999999 477
Q ss_pred ccccccCCccCc-cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhh
Q 044602 222 RHTRVGGGFIKG-ISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHM 300 (674)
Q Consensus 222 ~~~~vg~~~~~~-LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~ 300 (674)
.++.++ + |||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++|||+.. +...
T Consensus 136 ~~~~~~-----~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~-~~~~ 209 (250)
T 2d2e_A 136 LSRYLN-----EGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRI-LNYI 209 (250)
T ss_dssp GGSBTT-----CC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGG-GGTS
T ss_pred hcCCcc-----cCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHh
Confidence 777654 6 99999999999999999999999999999999999999999999997679999999999764 5566
Q ss_pred -cCEEEEEeCCEEEEecChhH
Q 044602 301 -FDKLLLISEGYPVYYGKARE 320 (674)
Q Consensus 301 -~D~v~~L~~G~iv~~G~~~~ 320 (674)
||++++|++|++++.|+++.
T Consensus 210 ~~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 210 QPDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp CCSEEEEEETTEEEEEESHHH
T ss_pred cCCEEEEEECCEEEEEeCHHH
Confidence 59999999999999999873
No 24
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=3.1e-47 Score=397.34 Aligned_cols=220 Identities=25% Similarity=0.390 Sum_probs=185.4
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++||+++|. .+++|+||||++++||+++|+||||||||||+|+|+|+++
T Consensus 20 ~~l~~~~l~~~y~---------------------------~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 20 MLIQLDQIGRMKQ---------------------------GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp EEEEEEEEEEEET---------------------------TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred ceEEEEeEEEEEC---------------------------CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4699999999873 2469999999999999999999999999999999999884
Q ss_pred CCCccEEEECCEeCC--h----hccccEEEEccCCCC--CCCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCC
Q 044602 148 DDVKGNITYNDIPYN--P----ALKRRIGFVTQDDVL--LPQLTVEETLVFAAFLRLP-GNMNRQQKYARVQMILKELGL 218 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~--~----~~~~~igyv~Q~~~l--~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL 218 (674)
+.+|+|.++|+++. . .+++.+|||+|++.+ .+.+||+||+.++...... .....++..++++++++.+||
T Consensus 73 -p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl 151 (279)
T 2ihy_A 73 -ATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGM 151 (279)
T ss_dssp -CSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTC
T ss_pred -CCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCC
Confidence 56999999998875 2 356789999999753 3457999999886321100 001123445678999999999
Q ss_pred CccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEE--EEEecCCchH
Q 044602 219 ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTV--ITTIHQPSSR 296 (674)
Q Consensus 219 ~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tv--i~~~H~~~~~ 296 (674)
.+..++.++ +|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|| |++|||+. +
T Consensus 152 ~~~~~~~~~-----~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~-~ 225 (279)
T 2ihy_A 152 SAKAQQYIG-----YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-E 225 (279)
T ss_dssp GGGTTSBGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG-G
T ss_pred hhHhcCChh-----hCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH-H
Confidence 888887654 899999999999999999999999999999999999999999999997669999 99999976 4
Q ss_pred HHhhcCEEEEEeCCEEEEecChhHH
Q 044602 297 MFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 297 i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
+.++||++++|++|++++.|+++++
T Consensus 226 ~~~~~d~v~~l~~G~i~~~g~~~~~ 250 (279)
T 2ihy_A 226 ITANFSKILLLKDGQSIQQGAVEDI 250 (279)
T ss_dssp CCTTCCEEEEEETTEEEEEEEHHHH
T ss_pred HHHhCCEEEEEECCEEEEECCHHHH
Confidence 6789999999999999999998876
No 25
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=9.6e-47 Score=387.16 Aligned_cols=215 Identities=31% Similarity=0.479 Sum_probs=180.0
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++||+++|+. +.+.+|+|+||++++||+++|+||||||||||+|+|+|+++
T Consensus 6 ~~~~~~~l~~~y~~-------------------------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 6 HDITFRNIRFRYKP-------------------------DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp EEEEEEEEEEESST-------------------------TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CceeEEEEEEEeCC-------------------------CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46899999997631 12569999999999999999999999999999999999874
Q ss_pred CCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 044602 148 DDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRH 223 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 223 (674)
+.+|+|.++|+++.. .+++.+|||+|++.+++ .||+||+.++.. ... .++++++++.+++.+..+
T Consensus 61 -p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~ 129 (247)
T 2ff7_A 61 -PENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANP-----GMS----VEKVIYAAKLAGAHDFIS 129 (247)
T ss_dssp -CSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTCT-----TCC----HHHHHHHHHHHTCHHHHH
T ss_pred -CCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccCC-----CCC----HHHHHHHHHHhChHHHHH
Confidence 569999999999753 35678999999999887 499999988521 112 234566777777765433
Q ss_pred -------ccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchH
Q 044602 224 -------TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSR 296 (674)
Q Consensus 224 -------~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~ 296 (674)
+.++ +.+.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++ +|+|||++||++..
T Consensus 130 ~~~~gl~~~~~-~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~- 206 (247)
T 2ff7_A 130 ELREGYNTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLST- 206 (247)
T ss_dssp TSTTGGGCBCS-TTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGG-
T ss_pred hCcchhhhhhh-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH-
Confidence 2232 3356899999999999999999999999999999999999999999999995 59999999999864
Q ss_pred HHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 297 MFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 297 i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+ ..||++++|++|++++.|+++++.
T Consensus 207 ~-~~~d~v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 207 V-KNADRIIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp G-TTSSEEEEEETTEEEEEECHHHHH
T ss_pred H-HhCCEEEEEECCEEEEECCHHHHH
Confidence 3 469999999999999999998874
No 26
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=4.3e-46 Score=386.57 Aligned_cols=229 Identities=25% Similarity=0.343 Sum_probs=189.9
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC-C
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL-T 147 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~-~ 147 (674)
.++++||+++|. .+++|+||||++++||+++|+||||||||||+|+|+|+. .
T Consensus 20 ~l~~~~l~~~y~---------------------------~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~ 72 (267)
T 2zu0_C 20 MLSIKDLHVSVE---------------------------DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDY 72 (267)
T ss_dssp CEEEEEEEEEET---------------------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTC
T ss_pred eEEEEeEEEEEC---------------------------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 599999999773 246999999999999999999999999999999999984 2
Q ss_pred CCCccEEEECCEeCCh----hc-cccEEEEccCCCCCCCCCHHHHHHHHHh-hc---CCCCCCHHHHHHHHHHHHHHcCC
Q 044602 148 DDVKGNITYNDIPYNP----AL-KRRIGFVTQDDVLLPQLTVEETLVFAAF-LR---LPGNMNRQQKYARVQMILKELGL 218 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~----~~-~~~igyv~Q~~~l~~~lTV~e~l~~~~~-~~---~~~~~~~~~~~~~v~~~l~~lgL 218 (674)
++.+|+|.++|+++.. .. ++.++||+|++.+++.+||.||+.+... .+ .....++++..++++++++.+||
T Consensus 73 ~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl 152 (267)
T 2zu0_C 73 EVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKM 152 (267)
T ss_dssp EEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTC
T ss_pred CCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCC
Confidence 4569999999998742 12 3469999999999999999999987542 11 11122344556788999999999
Q ss_pred C-ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHH
Q 044602 219 E-RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRM 297 (674)
Q Consensus 219 ~-~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i 297 (674)
. +..++.++ .+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++.. +
T Consensus 153 ~~~~~~~~~~----~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~-~ 227 (267)
T 2zu0_C 153 PEDLLTRSVN----VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRI-L 227 (267)
T ss_dssp CTTTTTSBTT----TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGG-G
T ss_pred ChhHhcCCcc----cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHH-H
Confidence 6 45666542 1499999999999999999999999999999999999999999999987679999999999754 4
Q ss_pred Hhh-cCEEEEEeCCEEEEecChhHHHHHHHhCCC
Q 044602 298 FHM-FDKLLLISEGYPVYYGKARESMEYFSSLGF 330 (674)
Q Consensus 298 ~~~-~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~ 330 (674)
... ||++++|++|++++.|+++++.. .+..++
T Consensus 228 ~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~ 260 (267)
T 2zu0_C 228 DYIKPDYVHVLYQGRIVKSGDFTLVKQ-LEEQGY 260 (267)
T ss_dssp GTSCCSEEEEEETTEEEEEECTTHHHH-HHTTTC
T ss_pred HhhcCCEEEEEECCEEEEEcCHHHHhh-hhhcch
Confidence 555 89999999999999999988753 344444
No 27
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=8.9e-47 Score=392.47 Aligned_cols=222 Identities=23% Similarity=0.394 Sum_probs=181.0
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|+.. +.+++|+||||++++||+++|+||||||||||+|+|+|+++
T Consensus 16 ~l~~~~l~~~y~~~------------------------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~- 70 (271)
T 2ixe_A 16 LVKFQDVSFAYPNH------------------------PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ- 70 (271)
T ss_dssp CEEEEEEEECCTTC------------------------TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-
T ss_pred eEEEEEEEEEeCCC------------------------CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-
Confidence 59999999976310 12569999999999999999999999999999999999874
Q ss_pred CCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHc--CCCcc
Q 044602 149 DVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLP-GNMNRQQKYARVQMILKEL--GLERC 221 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~l--gL~~~ 221 (674)
+.+|+|.++|+++.. .+++.+|||+|++.+++. ||+||+.++...... ....+......++++++.+ ||.+.
T Consensus 71 p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~ 149 (271)
T 2ixe_A 71 PTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGR-SFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTE 149 (271)
T ss_dssp CSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSS-BHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSB
T ss_pred CCCCEEEECCEEcccCCHHHHhccEEEEecCCccccc-cHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhh
Confidence 569999999998743 356789999999998885 999999986421100 0000111223456778887 67665
Q ss_pred ccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecCCchHHHhh
Q 044602 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK-AGRTVITTIHQPSSRMFHM 300 (674)
Q Consensus 222 ~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~ 300 (674)
.++. +.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++++ +|+|||++||++.. + ..
T Consensus 150 ~~~~-----~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~-~-~~ 222 (271)
T 2ixe_A 150 VGET-----GNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSL-A-ER 222 (271)
T ss_dssp CCGG-----GTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHH-H-TT
T ss_pred hcCC-----cCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHH-H-Hh
Confidence 5554 358999999999999999999999999999999999999999999999865 48999999999753 4 45
Q ss_pred cCEEEEEeCCEEEEecChhHHHH
Q 044602 301 FDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 301 ~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
||+|++|++|++++.|+++++.+
T Consensus 223 ~d~v~~l~~G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 223 AHHILFLKEGSVCEQGTHLQLME 245 (271)
T ss_dssp CSEEEEEETTEEEEEECHHHHHH
T ss_pred CCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999998753
No 28
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.1e-45 Score=380.45 Aligned_cols=210 Identities=26% Similarity=0.410 Sum_probs=181.2
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|.. .+++|+|+||++++||+++|+||||||||||+|+|+|+++
T Consensus 4 ~l~i~~l~~~y~~--------------------------~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~- 56 (253)
T 2nq2_C 4 ALSVENLGFYYQA--------------------------ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR- 56 (253)
T ss_dssp EEEEEEEEEEETT--------------------------TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC-
T ss_pred eEEEeeEEEEeCC--------------------------CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-
Confidence 4899999997730 2469999999999999999999999999999999999884
Q ss_pred CCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccc
Q 044602 149 DVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLP-GNMNRQQKYARVQMILKELGLERCRHTRVG 227 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 227 (674)
+.+|+|. .++.+|||+|++.+++.+||+||+.++...... ......+..++++++++.+||.+..++.+
T Consensus 57 p~~G~I~---------~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~- 126 (253)
T 2nq2_C 57 PIQGKIE---------VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREF- 126 (253)
T ss_dssp CSEEEEE---------ECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBG-
T ss_pred CCCcEEE---------EeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCCh-
Confidence 5699998 356799999999999899999999987532110 00112344567899999999998887765
Q ss_pred CCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEE
Q 044602 228 GGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLL 306 (674)
Q Consensus 228 ~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~ 306 (674)
.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++|||+. .+.++||++++
T Consensus 127 ----~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~v~~ 201 (253)
T 2nq2_C 127 ----TSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLL 201 (253)
T ss_dssp ----GGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSEEEE
T ss_pred ----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEE
Confidence 489999999999999999999999999999999999999999999999877 999999999975 46789999999
Q ss_pred EeCCEEEEecChhHH
Q 044602 307 ISEGYPVYYGKARES 321 (674)
Q Consensus 307 L~~G~iv~~G~~~~~ 321 (674)
|++|+ ++.|+++++
T Consensus 202 l~~G~-~~~g~~~~~ 215 (253)
T 2nq2_C 202 LNKQN-FKFGETRNI 215 (253)
T ss_dssp EETTE-EEEEEHHHH
T ss_pred EeCCe-EecCCHHHH
Confidence 99999 999998876
No 29
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=5.4e-46 Score=381.76 Aligned_cols=196 Identities=24% Similarity=0.376 Sum_probs=174.9
Q ss_pred cceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHH
Q 044602 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVE 185 (674)
Q Consensus 110 ~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~ 185 (674)
++|+|+||++++||+++|+||||||||||+|+|+|+++ +. |+|.++|+++.. .+++.+|||+|++.+++.+||+
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~-p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 91 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 91 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-CE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHH
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-CC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHH
Confidence 48999999999999999999999999999999999884 56 999999998742 3567899999999999999999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCC-------EEEEe
Q 044602 186 ETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPS-------LLLLD 258 (674)
Q Consensus 186 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~-------illLD 258 (674)
||+.++... . .. .++++++++.+||.+..++.+ .+|||||||||+|||||+.+|+ +||||
T Consensus 92 e~l~~~~~~---~-~~----~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLD 158 (249)
T 2qi9_C 92 HYLTLHQHD---K-TR----TELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLD 158 (249)
T ss_dssp HHHHTTCSS---T-TC----HHHHHHHHHHTTCGGGTTSBG-----GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEES
T ss_pred HHHHHhhcc---C-Cc----HHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEE
Confidence 999986211 1 11 456889999999988877765 4899999999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHH
Q 044602 259 EPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 259 EPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
|||+|||+.++..+.+.|++++++|+|||++|||+. .+.++||++++|++|++++.|+++++
T Consensus 159 EPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 220 (249)
T 2qi9_C 159 EPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLN-HTLRHAHRAWLLKGGKMLASGRREEV 220 (249)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEEEHHHH
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999877999999999975 46789999999999999999998876
No 30
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=1.5e-46 Score=384.90 Aligned_cols=202 Identities=29% Similarity=0.438 Sum_probs=172.3
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTV 184 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV 184 (674)
+++|+|+|+++++||+++|+||||||||||+|+|+|+++ +.+|+|.++|+++.. .+++.+|||+|++.+++. ||
T Consensus 15 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~-tv 92 (243)
T 1mv5_A 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ-PTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAG-TI 92 (243)
T ss_dssp SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC-CSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCE-EH
T ss_pred CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccc-cH
Confidence 569999999999999999999999999999999999874 569999999998753 356789999999998885 99
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc------CCccCccCHHHHHHHHHHHHHhhCCCEEEEe
Q 044602 185 EETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVG------GGFIKGISGGERKRTSIGYEILVDPSLLLLD 258 (674)
Q Consensus 185 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg------~~~~~~LSgGerqRv~iA~aL~~~P~illLD 258 (674)
+||+.++... ... .++++++++.+++.+..++... ++.+.+|||||||||+|||||+.+|++|+||
T Consensus 93 ~enl~~~~~~----~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLD 164 (243)
T 1mv5_A 93 RENLTYGLEG----DYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLD 164 (243)
T ss_dssp HHHTTSCTTS----CSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred HHHHhhhccC----CCC----HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 9999875211 112 2356788888998776554321 2345689999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHHH
Q 044602 259 EPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 259 EPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
|||+|||+.++..+++.|++++ +|+|||++||++.. + ..||++++|++|++++.|+++++.+
T Consensus 165 EPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~-~-~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 165 EATASLDSESESMVQKALDSLM-KGRTTLVIAHRLST-I-VDADKIYFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp CCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHHH-H-HHCSEEEEEETTEECCCSCHHHHHH
T ss_pred CCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChHH-H-HhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999997 69999999999753 4 5699999999999999999988753
No 31
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.7e-46 Score=427.56 Aligned_cols=268 Identities=23% Similarity=0.419 Sum_probs=205.7
Q ss_pred CcccceeeecCCCCcchhHHHHHHHHh--------hcc-----------ccccccccCCCccc---c---CCCCceeEEE
Q 044602 18 STMGSMQIAAGSNGFGHSIEFMSQAYL--------RNR-----------YSEIDIVDESSSIE---K---DRPLPIFLKF 72 (674)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-----------~~~~~~~~~~~~~~---~---~~~~~~~l~~ 72 (674)
+.+|++.+.+|..++|.++.+..+... ... ....++.+.+++.. . ....+..+++
T Consensus 265 l~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~ 344 (587)
T 3qf4_A 265 LWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEADNALALPNVEGSVSF 344 (587)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCCTTCBCCSCCCCCEEE
T ss_pred HHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCccccCCCCCcEEE
Confidence 456778888999999988877654321 000 00012222211110 0 1122346999
Q ss_pred EeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCcc
Q 044602 73 EDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKG 152 (674)
Q Consensus 73 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G 152 (674)
+||+|+|+. +.+++|+|+|+++++||++||+||||||||||+|+|+|++ ++.+|
T Consensus 345 ~~v~~~y~~-------------------------~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~-~~~~G 398 (587)
T 3qf4_A 345 ENVEFRYFE-------------------------NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLI-DPERG 398 (587)
T ss_dssp EEEEECSSS-------------------------SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSS-CCSEE
T ss_pred EEEEEEcCC-------------------------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-cCCCc
Confidence 999997742 2356999999999999999999999999999999999987 45699
Q ss_pred EEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHH-----HHHHHHHcCCCcccc
Q 044602 153 NITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYAR-----VQMILKELGLERCRH 223 (674)
Q Consensus 153 ~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~ 223 (674)
+|.+||+++.+ .+|+++|||+|++.+|+. ||+||+.++.. ..++++..+. +++.++ .+++..+
T Consensus 399 ~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~-----~~~~~~~~~~~~~~~~~~~i~--~l~~g~~ 470 (587)
T 3qf4_A 399 RVEVDELDVRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGRE-----DATDDEIVEAAKIAQIHDFII--SLPEGYD 470 (587)
T ss_dssp EEEESSSBGGGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTCS-----SCCHHHHHHHHHHTTCHHHHH--TSSSGGG
T ss_pred EEEECCEEcccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccCC-----CCCHHHHHHHHHHhCcHHHHH--hcccchh
Confidence 99999999853 467889999999999987 99999987632 1222221111 122232 3466788
Q ss_pred ccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCE
Q 044602 224 TRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDK 303 (674)
Q Consensus 224 ~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 303 (674)
+.+|+. +.+||||||||++|||||+++|+||+||||||+||+.++..+.+.|+++. +|+|+|+++|+++. ...|||
T Consensus 471 ~~~~~~-~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~--~~~~d~ 546 (587)
T 3qf4_A 471 SRVERG-GRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIPT--ALLADK 546 (587)
T ss_dssp CEECSS-SCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHHH--HTTSSE
T ss_pred hHhcCC-CCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChHH--HHhCCE
Confidence 888754 45799999999999999999999999999999999999999999999985 59999999999864 468999
Q ss_pred EEEEeCCEEEEecChhHHHH
Q 044602 304 LLLISEGYPVYYGKARESME 323 (674)
Q Consensus 304 v~~L~~G~iv~~G~~~~~~~ 323 (674)
|++|++|++++.|+++|+.+
T Consensus 547 i~vl~~G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 547 ILVLHEGKVAGFGTHKELLE 566 (587)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999999864
No 32
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=2.8e-45 Score=379.00 Aligned_cols=215 Identities=28% Similarity=0.426 Sum_probs=178.6
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|+.. ..+++|+|+|+++++||+++|+||||||||||+|+|+|+++
T Consensus 17 ~l~i~~l~~~y~~~------------------------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~- 71 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQ------------------------TNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD- 71 (260)
T ss_dssp CEEEEEEEECCTTC------------------------CSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-
T ss_pred eEEEEEEEEEeCCC------------------------CcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC-
Confidence 48999999977310 11469999999999999999999999999999999999874
Q ss_pred CCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC------
Q 044602 149 DVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL------ 218 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL------ 218 (674)
+ +|+|.++|+++.. .+++.+|||+|++.+++ .||+||+.++.. ...+ +++.+.++.+++
T Consensus 72 ~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~~----~~~~~~l~~~~l~~~~~~ 140 (260)
T 2ghi_A 72 A-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGKL-----DATD----EEVIKATKSAQLYDFIEA 140 (260)
T ss_dssp C-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCT-----TCCH----HHHHHHHHHTTCHHHHHT
T ss_pred C-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccCC-----CCCH----HHHHHHHHHhCCHHHHHh
Confidence 5 8999999998742 35678999999999887 499999988521 1122 234556666654
Q ss_pred -CccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHH
Q 044602 219 -ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRM 297 (674)
Q Consensus 219 -~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i 297 (674)
++..++.++ +.+.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++++ |+|||++||++.. +
T Consensus 141 l~~~~~~~~~-~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~-~ 217 (260)
T 2ghi_A 141 LPKKWDTIVG-NKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLST-I 217 (260)
T ss_dssp STTGGGCEES-SSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG-S
T ss_pred cccccccccc-CCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H
Confidence 344455454 34568999999999999999999999999999999999999999999999965 8999999999864 3
Q ss_pred HhhcCEEEEEeCCEEEEecChhHHHH
Q 044602 298 FHMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 298 ~~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
..||++++|++|++++.|+++++.+
T Consensus 218 -~~~d~i~~l~~G~i~~~g~~~~l~~ 242 (260)
T 2ghi_A 218 -SSAESIILLNKGKIVEKGTHKDLLK 242 (260)
T ss_dssp -TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred -HhCCEEEEEECCEEEEECCHHHHHh
Confidence 5699999999999999999998753
No 33
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=7e-46 Score=424.84 Aligned_cols=264 Identities=29% Similarity=0.400 Sum_probs=207.2
Q ss_pred CcccceeeecCCCCcchhHHHHHHHHh---------------------hccccccccccCCCccc---cC---CCCceeE
Q 044602 18 STMGSMQIAAGSNGFGHSIEFMSQAYL---------------------RNRYSEIDIVDESSSIE---KD---RPLPIFL 70 (674)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~---~~---~~~~~~l 70 (674)
+.+|++.+.+|..++|.++.++.+... .++ ..++.+.+++.. .. ...+..+
T Consensus 263 ~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~r--i~~~l~~~~~~~~~~~~~~~~~~~~~i 340 (578)
T 4a82_A 263 IGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDR--VFQLIDEDYDIKNGVGAQPIEIKQGRI 340 (578)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHH--HHHHHTCCCSSCCCTTCCCCCCCSCCE
T ss_pred HHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHcCCCcccCCCCccccCCCCCeE
Confidence 456788888999999988887654321 000 012222221111 00 1223469
Q ss_pred EEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCC
Q 044602 71 KFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDV 150 (674)
Q Consensus 71 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~ 150 (674)
+++||+|+|+. +.+++|+|+|+++++||++||+||||||||||+|+|+|.+ ++.
T Consensus 341 ~~~~v~~~y~~-------------------------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~-~p~ 394 (578)
T 4a82_A 341 DIDHVSFQYND-------------------------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY-DVT 394 (578)
T ss_dssp EEEEEEECSCS-------------------------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSS-CCS
T ss_pred EEEEEEEEcCC-------------------------CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCC-CCC
Confidence 99999997742 2356999999999999999999999999999999999987 456
Q ss_pred ccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-------CC
Q 044602 151 KGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG-------LE 219 (674)
Q Consensus 151 ~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~ 219 (674)
+|+|.+||+++.+ .+|+++|||+|++.+|+. ||+||+.++.. ..++ +++.+.++..+ ++
T Consensus 395 ~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~lp 464 (578)
T 4a82_A 395 SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGRP-----TATD----EEVVEAAKMANAHDFIMNLP 464 (578)
T ss_dssp EEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGCS-----SCCH----HHHHHHHHHTTCHHHHHTST
T ss_pred CcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCCC-----CCCH----HHHHHHHHHhCcHHHHHhCc
Confidence 9999999999853 467899999999999987 99999998631 1122 22334444433 45
Q ss_pred ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHh
Q 044602 220 RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFH 299 (674)
Q Consensus 220 ~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~ 299 (674)
+..++.+|+. ..+||||||||++|||||+++|++|+|||||||||+.++..+.+.++++. +|+|+|+++|+++. .+
T Consensus 465 ~g~~t~~~~~-g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~--~~ 540 (578)
T 4a82_A 465 QGYDTEVGER-GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST--IT 540 (578)
T ss_dssp TGGGCBCCGG-GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG--TT
T ss_pred chhhhhhccC-CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HH
Confidence 6788888854 45799999999999999999999999999999999999999999999985 48999999999875 45
Q ss_pred hcCEEEEEeCCEEEEecChhHHHH
Q 044602 300 MFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 300 ~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
.||+|++|++|++++.|+++|+.+
T Consensus 541 ~~d~i~~l~~G~i~~~g~~~el~~ 564 (578)
T 4a82_A 541 HADKIVVIENGHIVETGTHRELIA 564 (578)
T ss_dssp TCSEEEEEETTEEEEEECHHHHHH
T ss_pred cCCEEEEEECCEEEEECCHHHHHh
Confidence 699999999999999999999864
No 34
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=3e-45 Score=420.04 Aligned_cols=266 Identities=24% Similarity=0.309 Sum_probs=209.8
Q ss_pred CCcccceeeecCCCCcchhHHHHHHHHh---------------------hccccccccccCCCccc-c--C-CCCceeEE
Q 044602 17 PSTMGSMQIAAGSNGFGHSIEFMSQAYL---------------------RNRYSEIDIVDESSSIE-K--D-RPLPIFLK 71 (674)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~-~--~-~~~~~~l~ 71 (674)
.+.+|++.+.+|..++|.++.++.+... .++. .++.+.+++.. . . ......++
T Consensus 266 ~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri--~~~l~~~~~~~~~~~~~~~~~~~i~ 343 (582)
T 3b60_A 266 VLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTL--FAILDSEQEKDEGKRVIDRATGDLE 343 (582)
T ss_dssp HHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHSCCSCCCCCBCCSCCCCCEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHcCCCCccCCCCCCCCCCCcEE
Confidence 3456888899999999998887655421 0000 02222211110 1 1 11124599
Q ss_pred EEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 044602 72 FEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVK 151 (674)
Q Consensus 72 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~ 151 (674)
++||+|+|+. +.+++|+|+|+++++||++||+||||||||||+|+|+|++ ++.+
T Consensus 344 ~~~v~~~y~~-------------------------~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~-~p~~ 397 (582)
T 3b60_A 344 FRNVTFTYPG-------------------------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFY-DIDE 397 (582)
T ss_dssp EEEEEECSSS-------------------------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTT-CCSE
T ss_pred EEEEEEEcCC-------------------------CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc-CCCC
Confidence 9999997631 1256999999999999999999999999999999999987 4569
Q ss_pred cEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-------c
Q 044602 152 GNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE-------R 220 (674)
Q Consensus 152 G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~ 220 (674)
|+|.+||+++.+ .+|+++|||+|++.+|+. ||+||+.++.. + ..++ ++++++++.+++. +
T Consensus 398 G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~~~~----~~~~~~l~~~~l~~~~~~~p~ 468 (582)
T 3b60_A 398 GHILMDGHDLREYTLASLRNQVALVSQNVHLFND-TVANNIAYART---E-EYSR----EQIEEAARMAYAMDFINKMDN 468 (582)
T ss_dssp EEEEETTEETTTBCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTTT---S-CCCH----HHHHHHHHTTTCHHHHHHSTT
T ss_pred CeEEECCEEccccCHHHHHhhCeEEccCCcCCCC-CHHHHHhccCC---C-CCCH----HHHHHHHHHcCCHHHHHhccc
Confidence 999999999853 467789999999999986 99999998631 1 1222 3456667766653 4
Q ss_pred cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhh
Q 044602 221 CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHM 300 (674)
Q Consensus 221 ~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~ 300 (674)
..|+.+|+. ..+||||||||++|||||+++|++|+||||||+||+.++..+.+.|+++.+ |+|+|+++|+++. .+.
T Consensus 469 g~~~~~~~~-~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~--~~~ 544 (582)
T 3b60_A 469 GLDTIIGEN-GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST--IEQ 544 (582)
T ss_dssp GGGSBCCTT-SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGG--TTT
T ss_pred cccccccCC-CCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHH--HHh
Confidence 677888754 467999999999999999999999999999999999999999999999975 9999999999875 457
Q ss_pred cCEEEEEeCCEEEEecChhHHHH
Q 044602 301 FDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 301 ~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
||+|++|++|++++.|+++|+.+
T Consensus 545 ~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 545 ADEIVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp CSEEEEEETTEEEEEECHHHHHH
T ss_pred CCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999999864
No 35
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=3.7e-45 Score=419.29 Aligned_cols=268 Identities=23% Similarity=0.325 Sum_probs=209.4
Q ss_pred CCcccceeeecCCCCcchhHHHHHHHHh--------hcc-----------ccccccccCCCcccc---C-CCCceeEEEE
Q 044602 17 PSTMGSMQIAAGSNGFGHSIEFMSQAYL--------RNR-----------YSEIDIVDESSSIEK---D-RPLPIFLKFE 73 (674)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-----------~~~~~~~~~~~~~~~---~-~~~~~~l~~~ 73 (674)
.+.+|++.+.+|..++|.++.+..+... ... ....++.+.+++... . ......++++
T Consensus 266 i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~ 345 (582)
T 3b5x_A 266 VLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNGKYEAERVNGEVDVK 345 (582)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCCCeEEEE
Confidence 3456788889999999998887655421 000 000022222211111 1 1113469999
Q ss_pred eEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccE
Q 044602 74 DVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGN 153 (674)
Q Consensus 74 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~ 153 (674)
||+|+|+. +.+++|+|+|+++++||++||+||||||||||+|+|+|.+ ++.+|+
T Consensus 346 ~v~~~y~~-------------------------~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~-~p~~G~ 399 (582)
T 3b5x_A 346 DVTFTYQG-------------------------KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFY-DVDSGS 399 (582)
T ss_pred EEEEEcCC-------------------------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCCE
Confidence 99998842 1246999999999999999999999999999999999987 456999
Q ss_pred EEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccc
Q 044602 154 ITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE-------RCR 222 (674)
Q Consensus 154 I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~ 222 (674)
|.+||+++.+ .+|+++|||+|++.+|+. ||+||+.++.. + ..+ +++++++++.+++. +..
T Consensus 400 i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~~~----~~~~~~~~~~~~l~~~~~~~p~g~ 470 (582)
T 3b5x_A 400 ICLDGHDVRDYKLTNLRRHFALVSQNVHLFND-TIANNIAYAAE---G-EYT----REQIEQAARQAHAMEFIENMPQGL 470 (582)
T ss_pred EEECCEEhhhCCHHHHhcCeEEEcCCCccccc-cHHHHHhccCC---C-CCC----HHHHHHHHHHCCCHHHHHhCcccc
Confidence 9999998753 467899999999999986 99999998631 1 122 23456666666654 456
Q ss_pred cccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcC
Q 044602 223 HTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFD 302 (674)
Q Consensus 223 ~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 302 (674)
|+.+|+. ..+||||||||++|||||+++|++|+||||||+||+.++..+.+.|+++.+ |+|+|+++|+++. .+.||
T Consensus 471 ~t~~~~~-~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~--~~~~d 546 (582)
T 3b5x_A 471 DTVIGEN-GTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLST--IEQAD 546 (582)
T ss_pred cchhcCC-CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHH--HHhCC
Confidence 7778754 467999999999999999999999999999999999999999999999865 9999999999864 45799
Q ss_pred EEEEEeCCEEEEecChhHHHH
Q 044602 303 KLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 303 ~v~~L~~G~iv~~G~~~~~~~ 323 (674)
+|++|++|++++.|+++|+.+
T Consensus 547 ~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 547 EILVVDEGEIIERGRHADLLA 567 (582)
T ss_pred EEEEEECCEEEEECCHHHHHh
Confidence 999999999999999998853
No 36
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=7.7e-45 Score=417.67 Aligned_cols=269 Identities=25% Similarity=0.373 Sum_probs=208.1
Q ss_pred CcccceeeecCCCCcchhHHHHHHHHh--------hc-----------cccccccccCCCcc---ccC---CCCcee-EE
Q 044602 18 STMGSMQIAAGSNGFGHSIEFMSQAYL--------RN-----------RYSEIDIVDESSSI---EKD---RPLPIF-LK 71 (674)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~-----------~~~~~~~~~~~~~~---~~~---~~~~~~-l~ 71 (674)
+.+|++.+.+|..++|.++.+..+... .. .....++.+.+++. ... ...... ++
T Consensus 264 ~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~ 343 (595)
T 2yl4_A 264 LYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFNEGVILNEKSFQGALE 343 (595)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCSSCSBCCCTTTCCCCEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCCCCCcCCCCCeEE
Confidence 456788888999999998887655321 00 00001222221111 011 111235 99
Q ss_pred EEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 044602 72 FEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVK 151 (674)
Q Consensus 72 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~ 151 (674)
++||+|+|+.+ .++++|+|+|+++++||++||+||||||||||+|+|+|++ ++.+
T Consensus 344 ~~~v~~~y~~~------------------------~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~-~p~~ 398 (595)
T 2yl4_A 344 FKNVHFAYPAR------------------------PEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLY-DPAS 398 (595)
T ss_dssp EEEEEEECSSC------------------------TTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSS-CCSE
T ss_pred EEEEEEEeCCC------------------------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-CCCC
Confidence 99999988421 1246999999999999999999999999999999999987 4569
Q ss_pred cEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC-------Cc
Q 044602 152 GNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGL-------ER 220 (674)
Q Consensus 152 G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~ 220 (674)
|+|.+||+++.+ .+|+++|||+|++.+|+. ||+||+.++.... ...+ +++++++++.+++ ++
T Consensus 399 G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~--~~~~----~~~~~~~~~~~~l~~~~~~l~~ 471 (595)
T 2yl4_A 399 GTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSC-SIAENIAYGADDP--SSVT----AEEIQRVAEVANAVAFIRNFPQ 471 (595)
T ss_dssp EEEEETTEETTTBCHHHHHHSEEEECSSCCCCSS-BHHHHHHTTSSST--TTSC----HHHHHHHHHHTTCHHHHHTSSS
T ss_pred cEEEECCEEhhhCCHHHHHhceEEEccCCcccCC-CHHHHHhhcCCCc--cccC----HHHHHHHHHHcCCHHHHHhCcc
Confidence 999999999853 467789999999999986 9999999864210 0122 2456677777765 45
Q ss_pred cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhh
Q 044602 221 CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHM 300 (674)
Q Consensus 221 ~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~ 300 (674)
..|+.+|+. ..+||||||||++|||||+++|++|+||||||+||+.++..+.+.|+++.+ |+|+|++||+++. + +.
T Consensus 472 g~~~~~~~~-~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~-~-~~ 547 (595)
T 2yl4_A 472 GFNTVVGEK-GVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLST-I-KN 547 (595)
T ss_dssp GGGCBCSSS-SCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHHH-H-HH
T ss_pred cccccccCC-CCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHH-H-Hc
Confidence 678888754 467999999999999999999999999999999999999999999999976 8999999999864 4 56
Q ss_pred cCEEEEEeCCEEEEecChhHHH
Q 044602 301 FDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 301 ~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
||+|++|++|++++.|+++|+.
T Consensus 548 ~d~i~~l~~G~i~~~g~~~~l~ 569 (595)
T 2yl4_A 548 ANMVAVLDQGKITEYGKHEELL 569 (595)
T ss_dssp SSEEEEEETTEEEEEECSCC--
T ss_pred CCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999875
No 37
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=3.6e-45 Score=452.59 Aligned_cols=267 Identities=28% Similarity=0.408 Sum_probs=213.5
Q ss_pred CcccceeeecCCCCcchhHHHHHHHHh--------hc-----------cccccccccCCCccc-------cCCCCceeEE
Q 044602 18 STMGSMQIAAGSNGFGHSIEFMSQAYL--------RN-----------RYSEIDIVDESSSIE-------KDRPLPIFLK 71 (674)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~-----------~~~~~~~~~~~~~~~-------~~~~~~~~l~ 71 (674)
..+|++.+.+|..++|.++.++.+... .. .....++.+.++..+ .....+..++
T Consensus 338 ~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~ 417 (1321)
T 4f4c_A 338 FYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDIT 417 (1321)
T ss_dssp HHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEE
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccccCCCCCCcEE
Confidence 345788889999999988887655421 00 000013333222111 1112234699
Q ss_pred EEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 044602 72 FEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVK 151 (674)
Q Consensus 72 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~ 151 (674)
|+||+|+|+.. .++++|+|+|+++++||.+||+||||||||||+++|.|.+ ++.+
T Consensus 418 ~~nvsF~Y~~~------------------------~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~-~~~~ 472 (1321)
T 4f4c_A 418 VENVHFTYPSR------------------------PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYY-DVLK 472 (1321)
T ss_dssp EEEEEECCSSS------------------------TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSS-CCSE
T ss_pred EEEeeeeCCCC------------------------CCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcccc-cccc
Confidence 99999988631 2367999999999999999999999999999999999876 5679
Q ss_pred cEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-------CCc
Q 044602 152 GNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG-------LER 220 (674)
Q Consensus 152 G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~ 220 (674)
|+|.+||+++++ .+|++||||+|++.+|++ ||+|||.|+.. ..+++ ++.++++..+ |++
T Consensus 473 G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~-TI~eNI~~g~~-----~~~~~----~v~~a~~~a~l~~~i~~lp~ 542 (1321)
T 4f4c_A 473 GKITIDGVDVRDINLEFLRKNVAVVSQEPALFNC-TIEENISLGKE-----GITRE----EMVAACKMANAEKFIKTLPN 542 (1321)
T ss_dssp EEEEETTEETTTSCHHHHHHHEEEECSSCCCCSE-EHHHHHHTTCT-----TCCHH----HHHHHHHHTTCHHHHHHSTT
T ss_pred CcccCCCccchhccHHHHhhcccccCCcceeeCC-chhHHHhhhcc-----cchHH----HHHHHHHHccchhHHHcCCC
Confidence 999999999864 578899999999999998 99999999742 22332 2333333322 488
Q ss_pred cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhh
Q 044602 221 CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHM 300 (674)
Q Consensus 221 ~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~ 300 (674)
..||.||+++. .||||||||++||||+++||+||+||||||+||++++..+.+.|+++.+ |+|+|+++|+++. .+.
T Consensus 543 G~~T~vGe~G~-~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~-~~T~iiiaHrls~--i~~ 618 (1321)
T 4f4c_A 543 GYNTLVGDRGT-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK-GRTTIIIAHRLST--IRN 618 (1321)
T ss_dssp TTSSEESSSSC-CCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT-TSEEEEECSCTTT--TTT
T ss_pred CCccEecCCCC-CCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhC-CCEEEEEcccHHH--HHh
Confidence 99999998775 5999999999999999999999999999999999999999999999865 9999999999986 688
Q ss_pred cCEEEEEeCCEEEEecChhHHHH
Q 044602 301 FDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 301 ~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
||+|++|++|+|++.|+++|+++
T Consensus 619 aD~Iivl~~G~ive~Gth~eL~~ 641 (1321)
T 4f4c_A 619 ADLIISCKNGQVVEVGDHRALMA 641 (1321)
T ss_dssp CSEEEEEETTEEEEEECHHHHHT
T ss_pred CCEEEEeeCCeeeccCCHHHHHH
Confidence 99999999999999999999974
No 38
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.5e-44 Score=373.86 Aligned_cols=209 Identities=20% Similarity=0.264 Sum_probs=180.0
Q ss_pred EEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 044602 70 LKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDD 149 (674)
Q Consensus 70 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~ 149 (674)
++++||+++|+.. ...+++|+|+|++++ ||+++|+||||||||||+|+|+|++ +
T Consensus 2 l~~~~l~~~y~~~-----------------------~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p- 55 (263)
T 2pjz_A 2 IQLKNVGITLSGK-----------------------GYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-P- 55 (263)
T ss_dssp EEEEEEEEEEEEE-----------------------TTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-C-
T ss_pred EEEEEEEEEeCCC-----------------------CccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-C-
Confidence 7899999988521 011469999999999 9999999999999999999999987 5
Q ss_pred CccEEEECCEeCCh-hccccEE-EEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccc
Q 044602 150 VKGNITYNDIPYNP-ALKRRIG-FVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE-RCRHTRV 226 (674)
Q Consensus 150 ~~G~I~~~g~~~~~-~~~~~ig-yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v 226 (674)
.+|+|.++|+++.. ..++.+| ||+|++.+ .+||+||+.++.... .. ..++++++++.+||. +..++++
T Consensus 56 ~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~---~~----~~~~~~~~l~~~gl~~~~~~~~~ 126 (263)
T 2pjz_A 56 YSGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTVNDIVYLYEELK---GL----DRDLFLEMLKALKLGEEILRRKL 126 (263)
T ss_dssp CEEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBHHHHHHHHHHHT---CC----CHHHHHHHHHHTTCCGGGGGSBG
T ss_pred CCcEEEECCEECcchHHhhheEEEeCCCCcc--CCcHHHHHHHhhhhc---ch----HHHHHHHHHHHcCCChhHhcCCh
Confidence 59999999998742 1256899 99999887 789999999876432 11 135688999999998 8777765
Q ss_pred cCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcC-EEE
Q 044602 227 GGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFD-KLL 305 (674)
Q Consensus 227 g~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D-~v~ 305 (674)
.+|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ |||++|||+. .+.++|| +++
T Consensus 127 -----~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~-~~~~~~d~~i~ 197 (263)
T 2pjz_A 127 -----YKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELD-MLNLYKEYKAY 197 (263)
T ss_dssp -----GGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGG-GGGGCTTSEEE
T ss_pred -----hhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHH-HHHHhcCceEE
Confidence 48999999999999999999999999999999999999999999998753 9999999975 4678999 999
Q ss_pred EEeCCEEEEecChhHHH
Q 044602 306 LISEGYPVYYGKARESM 322 (674)
Q Consensus 306 ~L~~G~iv~~G~~~~~~ 322 (674)
+|++|++++.|+++++.
T Consensus 198 ~l~~G~i~~~g~~~~l~ 214 (263)
T 2pjz_A 198 FLVGNRLQGPISVSELL 214 (263)
T ss_dssp EEETTEEEEEEEHHHHH
T ss_pred EEECCEEEEecCHHHHH
Confidence 99999999999999875
No 39
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=2.6e-45 Score=368.24 Aligned_cols=202 Identities=24% Similarity=0.369 Sum_probs=172.4
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++||+++|+ . ++|+|+||++++||+++|+||||||||||||+|+|+++
T Consensus 9 ~~l~~~~ls~~y~---------------------------~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 9 SKLEIRDLSVGYD---------------------------K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp CEEEEEEEEEESS---------------------------S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred ceEEEEEEEEEeC---------------------------C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4589999998652 2 68999999999999999999999999999999999874
Q ss_pred CCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc
Q 044602 148 DDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVG 227 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 227 (674)
+.+|+|.++|+++. ..++.++||+|++.+++.+||+||+.++...... . .+ .++++++++.+||++. ++++
T Consensus 61 -p~~G~I~~~g~~~~-~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~---~~-~~~~~~~l~~~gl~~~-~~~~- 131 (214)
T 1sgw_A 61 -PLKGEIIYNGVPIT-KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-K---VN-KNEIMDALESVEVLDL-KKKL- 131 (214)
T ss_dssp -CSEEEEEETTEEGG-GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-C---CC-HHHHHHHHHHTTCCCT-TSBG-
T ss_pred -CCCeEEEECCEEhh-hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-c---hH-HHHHHHHHHHcCCCcC-CCCh-
Confidence 56999999999876 4677899999999999999999999997644211 1 11 3568899999999876 6554
Q ss_pred CCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEE
Q 044602 228 GGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLI 307 (674)
Q Consensus 228 ~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L 307 (674)
.+||||||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||++.. +..++|+++++
T Consensus 132 ----~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~-~~~~~d~v~~~ 206 (214)
T 1sgw_A 132 ----GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELS-YCDVNENLHKY 206 (214)
T ss_dssp ----GGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCT-TSSEEEEGGGG
T ss_pred ----hhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEe
Confidence 5899999999999999999999999999999999999999999999998668999999999864 67778887754
Q ss_pred eCCEE
Q 044602 308 SEGYP 312 (674)
Q Consensus 308 ~~G~i 312 (674)
+|+|
T Consensus 207 -~~~~ 210 (214)
T 1sgw_A 207 -STKI 210 (214)
T ss_dssp -BC--
T ss_pred -CCcc
Confidence 4554
No 40
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.9e-45 Score=422.80 Aligned_cols=263 Identities=27% Similarity=0.383 Sum_probs=203.7
Q ss_pred CcccceeeecCCCCcchhHHHHHHHHh---------------------hccccccccccCCCcccc-----CCCCceeEE
Q 044602 18 STMGSMQIAAGSNGFGHSIEFMSQAYL---------------------RNRYSEIDIVDESSSIEK-----DRPLPIFLK 71 (674)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~-----~~~~~~~l~ 71 (674)
+.+|++.+.+|..++|.++.++.+... .++ ..++.+.+++... ....+..++
T Consensus 279 ~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~r--i~~~l~~~~~~~~~~~~~~~~~~~~i~ 356 (598)
T 3qf4_B 279 SGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAER--IFEILDLEEEKDDPDAVELREVRGEIE 356 (598)
T ss_dssp HHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHH--HHHHTTSCCCCCCSSCCCCCSCCCCEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHcCCCCCCCCCCCCCCCCCCeEE
Confidence 346788888999999888776533210 001 0022222211110 111234699
Q ss_pred EEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 044602 72 FEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVK 151 (674)
Q Consensus 72 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~ 151 (674)
++||+|+|+ +.+++|+|+|+++++||++||+||||||||||+|+|+|++ ++.+
T Consensus 357 ~~~v~~~y~--------------------------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~-~p~~ 409 (598)
T 3qf4_B 357 FKNVWFSYD--------------------------KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFY-DVDR 409 (598)
T ss_dssp EEEEECCSS--------------------------SSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSS-CCSE
T ss_pred EEEEEEECC--------------------------CCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCc-CCCC
Confidence 999999763 1246999999999999999999999999999999999987 4569
Q ss_pred cEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-------CCc
Q 044602 152 GNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG-------LER 220 (674)
Q Consensus 152 G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~ 220 (674)
|+|.+||+++.+ .+|+++|||+|++.+|+. ||+||+.++... .+++ ++.+.++..+ +++
T Consensus 410 G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~ 479 (598)
T 3qf4_B 410 GQILVDGIDIRKIKRSSLRSSIGIVLQDTILFST-TVKENLKYGNPG-----ATDE----EIKEAAKLTHSDHFIKHLPE 479 (598)
T ss_dssp EEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSS-BHHHHHHSSSTT-----CCTT----HHHHHTTTTTCHHHHHTSTT
T ss_pred eEEEECCEEhhhCCHHHHHhceEEEeCCCccccc-cHHHHHhcCCCC-----CCHH----HHHHHHHHhCCHHHHHhccc
Confidence 999999999853 567899999999999986 999999986321 1111 2233333332 356
Q ss_pred cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhh
Q 044602 221 CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHM 300 (674)
Q Consensus 221 ~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~ 300 (674)
..++.+|+. ..+||||||||++|||||+++|+||+||||||+||+.++..+.+.|+++. +|+|+|+++|+++. + +.
T Consensus 480 g~~t~~~~~-g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~ 555 (598)
T 3qf4_B 480 GYETVLTDN-GEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNT-I-KN 555 (598)
T ss_dssp GGGCBCHHH-HTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTH-H-HH
T ss_pred cccchhcCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-Hc
Confidence 778888754 35799999999999999999999999999999999999999999999986 59999999999875 4 55
Q ss_pred cCEEEEEeCCEEEEecChhHHHH
Q 044602 301 FDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 301 ~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
||+|++|++|++++.|+++|+.+
T Consensus 556 ~d~i~~l~~G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 556 ADLIIVLRDGEIVEMGKHDELIQ 578 (598)
T ss_dssp CSEEEEECSSSEEECSCHHHHHH
T ss_pred CCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999864
No 41
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=6.2e-45 Score=450.50 Aligned_cols=219 Identities=28% Similarity=0.441 Sum_probs=190.3
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++|+||+|+|+.+ .+.+||+|+||+|+|||.+||+||||||||||+++|.|++
T Consensus 1075 g~I~f~nVsf~Y~~~------------------------~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~- 1129 (1321)
T 4f4c_A 1075 GKVIFKNVRFAYPER------------------------PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFY- 1129 (1321)
T ss_dssp CCEEEEEEEECCTTS------------------------CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSS-
T ss_pred CeEEEEEEEEeCCCC------------------------CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCc-
Confidence 469999999988632 2356999999999999999999999999999999999876
Q ss_pred CCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC------
Q 044602 148 DDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELG------ 217 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg------ 217 (674)
++.+|+|.+||+|+++ .+|++++|||||+.+|++ ||+|||.|+.. |.+.+++ ++.++++..+
T Consensus 1130 ~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~g-TIreNI~~gld---~~~~sd~----ei~~Al~~a~l~~~I~ 1201 (1321)
T 4f4c_A 1130 DTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDC-SIAENIIYGLD---PSSVTMA----QVEEAARLANIHNFIA 1201 (1321)
T ss_dssp CCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSE-EHHHHHSSSSC---TTTSCHH----HHHHHHHHTTCHHHHH
T ss_pred cCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCc-cHHHHHhccCC---CCCCCHH----HHHHHHHHhCChHHHH
Confidence 5679999999999874 689999999999999998 99999988732 2233333 3444554443
Q ss_pred -CCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchH
Q 044602 218 -LERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSR 296 (674)
Q Consensus 218 -L~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~ 296 (674)
|++..||.||+++. +||||||||++|||||+++|+||+||||||+||++++..|.+.|+++. +|+|+|+|+|++++
T Consensus 1202 ~Lp~GldT~vge~G~-~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsT- 1278 (1321)
T 4f4c_A 1202 ELPEGFETRVGDRGT-QLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNT- 1278 (1321)
T ss_dssp TSTTTTCSEETTTSC-SSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSST-
T ss_pred cCcCCCCCEecCCCc-ccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHH-
Confidence 47889999997664 699999999999999999999999999999999999999999998875 48999999999986
Q ss_pred HHhhcCEEEEEeCCEEEEecChhHHHH
Q 044602 297 MFHMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 297 i~~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
...||||+||++|+|++.|+|+|+++
T Consensus 1279 -i~~aD~I~Vld~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1279 -VMNADCIAVVSNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp -TTTCSEEEEESSSSEEEEECHHHHHH
T ss_pred -HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 67799999999999999999999975
No 42
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-44 Score=393.54 Aligned_cols=215 Identities=24% Similarity=0.313 Sum_probs=182.3
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++||+++|+. +.+.+|+||||++++||+++|+||||||||||||+|+|++
T Consensus 18 ~~i~~~~l~~~y~~-------------------------~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~- 71 (390)
T 3gd7_A 18 GQMTVKDLTAKYTE-------------------------GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL- 71 (390)
T ss_dssp CCEEEEEEEEESSS-------------------------SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCS-
T ss_pred CeEEEEEEEEEecC-------------------------CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCC-
Confidence 46999999997741 2356999999999999999999999999999999999987
Q ss_pred CCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 044602 148 DDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRH 223 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 223 (674)
+ .+|+|.++|+++.. .+++.+|||+|++.+|+ +||+||+.+.. ... .++++++++.++|.+..+
T Consensus 72 ~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~~----~~~v~~~l~~~~L~~~~~ 139 (390)
T 3gd7_A 72 N-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AHS----DQEIWKVADEVGLRSVIE 139 (390)
T ss_dssp E-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC------CSC----HHHHHHHHHHTTCHHHHT
T ss_pred C-CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc------ccC----HHHHHHHHHHhCCHHHHh
Confidence 4 68999999998753 35788999999999998 59999996421 112 246788999999987666
Q ss_pred ccccC------CccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHH
Q 044602 224 TRVGG------GFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRM 297 (674)
Q Consensus 224 ~~vg~------~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i 297 (674)
+.... +...+|||||||||+|||||+.+|++|||||||||||+.++..+.+.|+++. +++|+|++|||.. .
T Consensus 140 ~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e--~ 216 (390)
T 3gd7_A 140 QFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE--A 216 (390)
T ss_dssp TSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG--G
T ss_pred hcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH--H
Confidence 55431 1123499999999999999999999999999999999999999999999864 4899999999974 3
Q ss_pred HhhcCEEEEEeCCEEEEecChhHHHH
Q 044602 298 FHMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 298 ~~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
...||||++|++|+++..|+++++.+
T Consensus 217 ~~~aDri~vl~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 217 MLECDQFLVIEENKVRQYDSILELYH 242 (390)
T ss_dssp GTTCSEEEEEETTEEEEESSHHHHHH
T ss_pred HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 56799999999999999999999853
No 43
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=6.2e-44 Score=362.27 Aligned_cols=204 Identities=29% Similarity=0.439 Sum_probs=166.3
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|+ .+.+++|+|+|+++++||+++|+||||||||||+|+|+|+++
T Consensus 6 ~l~~~~l~~~y~-------------------------~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~- 59 (229)
T 2pze_A 6 EVVMENVTAFWE-------------------------EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE- 59 (229)
T ss_dssp EEEEEEEEECSS-------------------------TTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-
T ss_pred eEEEEEEEEEeC-------------------------CCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc-
Confidence 589999998663 123569999999999999999999999999999999999884
Q ss_pred CCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-------c
Q 044602 149 DVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER-------C 221 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~ 221 (674)
+.+|+|.++| +++||+|++.+++. ||+||+.++.. .... +.++.++.+++.+ .
T Consensus 60 p~~G~i~~~g---------~i~~v~q~~~~~~~-tv~enl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~ 119 (229)
T 2pze_A 60 PSEGKIKHSG---------RISFCSQFSWIMPG-TIKENIIFGVS------YDEY----RYRSVIKACQLEEDISKFAEK 119 (229)
T ss_dssp CSEEEEEECS---------CEEEECSSCCCCSB-CHHHHHHTTSC------CCHH----HHHHHHHHTTCHHHHTTSTTG
T ss_pred CCccEEEECC---------EEEEEecCCcccCC-CHHHHhhccCC------cChH----HHHHHHHHhCcHHHHHhCccc
Confidence 5699999998 49999999999886 99999988531 1111 2233444444432 2
Q ss_pred ccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEecCCchHHHhh
Q 044602 222 RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQV-LQKVAKAGRTVITTIHQPSSRMFHM 300 (674)
Q Consensus 222 ~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~-L~~l~~~g~tvi~~~H~~~~~i~~~ 300 (674)
.++.++ +.+.+|||||||||+|||||+.+|++|+|||||+|||+.++..+++. ++++. +|+|||++||++.. + ..
T Consensus 120 ~~~~~~-~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~-~-~~ 195 (229)
T 2pze_A 120 DNIVLG-EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEH-L-KK 195 (229)
T ss_dssp GGSCBC-TTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHH-H-HH
T ss_pred cccccc-CCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChHH-H-Hh
Confidence 233333 23568999999999999999999999999999999999999999997 45654 48999999999753 4 46
Q ss_pred cCEEEEEeCCEEEEecChhHHH
Q 044602 301 FDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 301 ~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
||++++|++|++++.|+++++.
T Consensus 196 ~d~v~~l~~G~i~~~g~~~~~~ 217 (229)
T 2pze_A 196 ADKILILHEGSSYFYGTFSELQ 217 (229)
T ss_dssp CSEEEEEETTEEEEEECHHHHH
T ss_pred CCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999998874
No 44
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=8.1e-44 Score=363.24 Aligned_cols=211 Identities=21% Similarity=0.362 Sum_probs=165.6
Q ss_pred eEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 69 FLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 69 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
.++++||+++|.. +.+++|+|+|+++++||+++|+||||||||||+|+|+|++ +
T Consensus 3 ~l~~~~l~~~y~~-------------------------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~ 56 (237)
T 2cbz_A 3 SITVRNATFTWAR-------------------------SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEM-D 56 (237)
T ss_dssp CEEEEEEEEESCT-------------------------TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCS-E
T ss_pred eEEEEEEEEEeCC-------------------------CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC-C
Confidence 3889999997731 1256999999999999999999999999999999999987 4
Q ss_pred CCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccc
Q 044602 149 DVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER-CRHTRVG 227 (674)
Q Consensus 149 ~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg 227 (674)
+.+|+|.++| .+|||+|++.+ +.+||+||+.++... . ....+......++.+.+++.+ ..++.++
T Consensus 57 p~~G~I~~~g---------~i~~v~Q~~~~-~~~tv~enl~~~~~~--~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 122 (237)
T 2cbz_A 57 KVEGHVAIKG---------SVAYVPQQAWI-QNDSLRENILFGCQL--E--EPYYRSVIQACALLPDLEILPSGDRTEIG 122 (237)
T ss_dssp EEEEEEEECS---------CEEEECSSCCC-CSEEHHHHHHTTSCC--C--TTHHHHHHHHTTCHHHHTTSTTGGGSEES
T ss_pred CCCceEEECC---------EEEEEcCCCcC-CCcCHHHHhhCcccc--C--HHHHHHHHHHHhhHHHHHhcccccccccc
Confidence 5699999998 39999999875 467999999986321 1 111111111111233333321 2223332
Q ss_pred CCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH---HHHhCCcEEEEEecCCchHHHhhcCEE
Q 044602 228 GGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQ---KVAKAGRTVITTIHQPSSRMFHMFDKL 304 (674)
Q Consensus 228 ~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~---~l~~~g~tvi~~~H~~~~~i~~~~D~v 304 (674)
+.+.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+ ++. +|+|||++||++.. + ..||++
T Consensus 123 -~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~-~-~~~d~v 198 (237)
T 2cbz_A 123 -EKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY-L-PQVDVI 198 (237)
T ss_dssp -TTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT-G-GGSSEE
T ss_pred -CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH-H-HhCCEE
Confidence 3456899999999999999999999999999999999999999999995 443 48999999999865 3 579999
Q ss_pred EEEeCCEEEEecChhHHHH
Q 044602 305 LLISEGYPVYYGKARESME 323 (674)
Q Consensus 305 ~~L~~G~iv~~G~~~~~~~ 323 (674)
++|++|++++.|+++++.+
T Consensus 199 ~~l~~G~i~~~g~~~~~~~ 217 (237)
T 2cbz_A 199 IVMSGGKISEMGSYQELLA 217 (237)
T ss_dssp EEEETTEEEEEECHHHHHH
T ss_pred EEEeCCEEEEeCCHHHHhh
Confidence 9999999999999998753
No 45
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=2.7e-42 Score=426.03 Aligned_cols=219 Identities=27% Similarity=0.401 Sum_probs=184.8
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++||+|+|+.+ ..+++|+|+|+++++||++||+||||||||||+++|+|.+
T Consensus 386 g~i~~~~v~~~y~~~------------------------~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~- 440 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPSR------------------------KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLY- 440 (1284)
T ss_dssp CCEEEEEEEECCSST------------------------TSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSS-
T ss_pred CeEEEEEEEEEcCCC------------------------CCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-
Confidence 469999999988521 1256999999999999999999999999999999999977
Q ss_pred CCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHH-----HHHHHHHcCC
Q 044602 148 DDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYAR-----VQMILKELGL 218 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL 218 (674)
++.+|+|.+||+++.. .+|+++|||+|++.+|+. ||+||+.++.. ..+.++..+. +++.++. +
T Consensus 441 ~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~-----~~~~~~~~~~~~~~~~~~~i~~--l 512 (1284)
T 3g5u_A 441 DPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFAT-TIAENIRYGRE-----DVTMDEIEKAVKEANAYDFIMK--L 512 (1284)
T ss_dssp CCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSS-CHHHHHHHHCS-----SCCHHHHHHHHHHTTCHHHHHH--S
T ss_pred CCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCc-cHHHHHhcCCC-----CCCHHHHHHHHHHhCcHHHHHh--c
Confidence 5569999999999753 577889999999999987 99999999842 1223222221 2333443 4
Q ss_pred CccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHH
Q 044602 219 ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMF 298 (674)
Q Consensus 219 ~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~ 298 (674)
++..||.+|+.+ .+||||||||++|||||+++|+||+||||||+||+.++..+.+.++++. +|+|+|+++|+++. +
T Consensus 513 ~~g~~t~~~~~g-~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-i- 588 (1284)
T 3g5u_A 513 PHQFDTLVGERG-AQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLST-V- 588 (1284)
T ss_dssp TTGGGCCCSSSS-CSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHHH-H-
T ss_pred cccccccccCCC-CccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-
Confidence 677899998654 5799999999999999999999999999999999999999999998875 49999999999864 4
Q ss_pred hhcCEEEEEeCCEEEEecChhHHHH
Q 044602 299 HMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 299 ~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
..||+|++|++|++++.|+++|+++
T Consensus 589 ~~~d~i~vl~~G~i~~~g~~~~l~~ 613 (1284)
T 3g5u_A 589 RNADVIAGFDGGVIVEQGNHDELMR 613 (1284)
T ss_dssp TTCSEEEECSSSCCCCEECHHHHHH
T ss_pred HcCCEEEEEECCEEEEECCHHHHHh
Confidence 5699999999999999999999864
No 46
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=4.5e-41 Score=415.07 Aligned_cols=221 Identities=25% Similarity=0.424 Sum_probs=184.2
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++||+|+|+.. ..+++|+|+||++++||++||+||||||||||+++|+|+.
T Consensus 1029 g~i~~~~v~~~y~~~------------------------~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~- 1083 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTR------------------------PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFY- 1083 (1284)
T ss_dssp CCEEEEEEEBCCSCG------------------------GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSS-
T ss_pred CcEEEEEEEEECCCC------------------------CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-
Confidence 469999999988521 1246999999999999999999999999999999999977
Q ss_pred CCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHH-----HHHHHHcCC
Q 044602 148 DDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARV-----QMILKELGL 218 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v-----~~~l~~lgL 218 (674)
++.+|+|.+||++++. .+|+++|||+||+.+|+. ||+||+.++...+ ..+.++..+.. ++.++ .+
T Consensus 1084 ~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~~~~~~---~~~~~~i~~~~~~~~~~~~i~--~l 1157 (1284)
T 3g5u_A 1084 DPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDC-SIAENIAYGDNSR---VVSYEEIVRAAKEANIHQFID--SL 1157 (1284)
T ss_dssp CCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSS-BHHHHHTCCCSSC---CCCHHHHHHHHHHHTCHHHHS--ST
T ss_pred CCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccc-cHHHHHhccCCCC---CCCHHHHHHHHHHhCcHHHHH--hC
Confidence 5569999999999863 578899999999998875 9999998864211 12332222211 22222 35
Q ss_pred CccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHH
Q 044602 219 ERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMF 298 (674)
Q Consensus 219 ~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~ 298 (674)
++..||.+|+.+ .+|||||||||+|||||+++|+||+|||||+|||+.++..+.+.|+++. +|+|+|+++||++. +
T Consensus 1158 ~~gldt~vge~G-~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~-~~~tvi~isH~l~~-i- 1233 (1284)
T 3g5u_A 1158 PDKYNTRVGDKG-TQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR-EGRTCIVIAHRLST-I- 1233 (1284)
T ss_dssp TTGGGCBCSTTS-CSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS-SSSCEEEECSCTTG-G-
T ss_pred ccccccccCCCC-CccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecCHHH-H-
Confidence 778899998654 5799999999999999999999999999999999999999999998864 59999999999875 4
Q ss_pred hhcCEEEEEeCCEEEEecChhHHHH
Q 044602 299 HMFDKLLLISEGYPVYYGKARESME 323 (674)
Q Consensus 299 ~~~D~v~~L~~G~iv~~G~~~~~~~ 323 (674)
..||||++|++|++++.|+++|+++
T Consensus 1234 ~~~dri~vl~~G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1234 QNADLIVVIQNGKVKEHGTHQQLLA 1258 (1284)
T ss_dssp GSCSEEEEEETBEEEEEECHHHHHH
T ss_pred HcCCEEEEEECCEEEEECCHHHHHh
Confidence 6699999999999999999999864
No 47
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=4.1e-41 Score=352.72 Aligned_cols=188 Identities=30% Similarity=0.484 Sum_probs=153.2
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETL 188 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l 188 (674)
+++|+|+||++++||+++|+||||||||||+|+|+|++ ++.+|+|.++| +++||+|++.+++. ||+||+
T Consensus 51 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~-~p~~G~I~~~g---------~i~~v~Q~~~l~~~-tv~enl 119 (290)
T 2bbs_A 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL-EPSEGKIKHSG---------RISFCSQNSWIMPG-TIKENI 119 (290)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSS-CEEEEEEECCS---------CEEEECSSCCCCSS-BHHHHH
T ss_pred ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCCcEEEECC---------EEEEEeCCCccCcc-cHHHHh
Confidence 45899999999999999999999999999999999987 45699999998 49999999998886 999999
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLER-------CRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPT 261 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPT 261 (674)
. +. . ... .++++.++.+++.+ ..++.++ ..+.+||||||||++|||||+.+|++|||||||
T Consensus 120 ~-~~--~----~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPt 187 (290)
T 2bbs_A 120 I-GV--S----YDE----YRYRSVIKACQLEEDISKFAEKDNIVLG-EGGITLSGGQRARISLARAVYKDADLYLLDSPF 187 (290)
T ss_dssp H-TT--C----CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBC-----CCCCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred h-Cc--c----cch----HHHHHHHHHhChHHHHHhccccccchhc-CccCcCCHHHHHHHHHHHHHHCCCCEEEEECCc
Confidence 8 42 1 111 12233444444432 2233333 234689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHH-HHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 262 SGLDSTSANKLIQVL-QKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 262 sgLD~~~~~~i~~~L-~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
+|||+.++..+++.+ +++. +|+|||++||++.. + ..||++++|++|++++.|+++++.
T Consensus 188 s~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~~-~-~~~d~i~~l~~G~i~~~g~~~~l~ 246 (290)
T 2bbs_A 188 GYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEH-L-KKADKILILHEGSSYFYGTFSELQ 246 (290)
T ss_dssp TTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHH-H-HHSSEEEEEETTEEEEEECHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHHH-H-HcCCEEEEEECCeEEEeCCHHHHh
Confidence 999999999999974 5554 48999999999753 4 569999999999999999999874
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=4e-37 Score=352.45 Aligned_cols=190 Identities=24% Similarity=0.308 Sum_probs=165.0
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHH
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVF 190 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~ 190 (674)
.|+++|+++++||+++|+||||||||||+|+|+|+++ +.+|+|.+ ++.+||++|+..+.+.+||.|++..
T Consensus 371 ~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~-p~~G~I~~---------~~~i~~v~Q~~~~~~~~tv~e~~~~ 440 (607)
T 3bk7_A 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE-PTEGKVEW---------DLTVAYKPQYIKAEYEGTVYELLSK 440 (607)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC-CSBSCCCC---------CCCEEEECSSCCCCCSSBHHHHHHH
T ss_pred EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEE---------eeEEEEEecCccCCCCCcHHHHHHh
Confidence 5899999999999999999999999999999999874 56899976 2469999999877788899998876
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 044602 191 AAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSAN 270 (674)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~ 270 (674)
..... ....++++++++.+||.+..++.++ +|||||||||+|||||+.+|++|||||||+|||+.++.
T Consensus 441 ~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~ 508 (607)
T 3bk7_A 441 IDSSK-------LNSNFYKTELLKPLGIIDLYDRNVE-----DLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRL 508 (607)
T ss_dssp HHHHH-------HHCHHHHHHTHHHHTCTTTTTSBGG-----GCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHH
T ss_pred hhccC-------CCHHHHHHHHHHHcCCchHhcCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHH
Confidence 41110 0123567889999999888887664 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-CCcEEEEEecCCchHHHhhcCEEEEEeC--CEEEEecChhHHHH
Q 044602 271 KLIQVLQKVAK-AGRTVITTIHQPSSRMFHMFDKLLLISE--GYPVYYGKARESME 323 (674)
Q Consensus 271 ~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~--G~iv~~G~~~~~~~ 323 (674)
.+.+.|+++++ .|+|||++|||+. .+..+|||+++|++ |+++..|+++++.+
T Consensus 509 ~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 509 AVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 99999999974 6999999999975 57889999999986 88889999988764
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=3.9e-37 Score=348.78 Aligned_cols=190 Identities=25% Similarity=0.313 Sum_probs=163.9
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHH
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVF 190 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~ 190 (674)
.|+++|+++++||+++|+||||||||||+|+|+|..+ +.+|+|.+ ...+|||+|+....+.+||.|++..
T Consensus 301 ~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~-p~~G~i~~---------~~~i~~v~Q~~~~~~~~tv~~~~~~ 370 (538)
T 1yqt_A 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE-PTEGKIEW---------DLTVAYKPQYIKADYEGTVYELLSK 370 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC-CSBCCCCC---------CCCEEEECSSCCCCCSSBHHHHHHH
T ss_pred EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEE---------CceEEEEecCCcCCCCCcHHHHHHh
Confidence 5899999999999999999999999999999999874 56899975 2469999999877788899998875
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 044602 191 AAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSAN 270 (674)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~ 270 (674)
...... ...++++++++.+|+.+..+++++ +|||||||||+|||+|+.+|++|||||||+|||+.++.
T Consensus 371 ~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~ 438 (538)
T 1yqt_A 371 IDASKL-------NSNFYKTELLKPLGIIDLYDREVN-----ELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRL 438 (538)
T ss_dssp HHHHHH-------TCHHHHHHTTTTTTCGGGTTSBGG-----GCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHH
T ss_pred hhccCC-------CHHHHHHHHHHHcCChhhhcCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHH
Confidence 411110 112467889999999877777654 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-CCcEEEEEecCCchHHHhhcCEEEEEeC--CEEEEecChhHHHH
Q 044602 271 KLIQVLQKVAK-AGRTVITTIHQPSSRMFHMFDKLLLISE--GYPVYYGKARESME 323 (674)
Q Consensus 271 ~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~--G~iv~~G~~~~~~~ 323 (674)
.+.+.|+++++ .|+|||++|||+. ++..+||||++|++ |+++..|+++++..
T Consensus 439 ~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 439 AVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp HHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 99999999974 5999999999975 57889999999986 78899999988765
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=3.5e-36 Score=340.39 Aligned_cols=191 Identities=23% Similarity=0.271 Sum_probs=161.8
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHH
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVF 190 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~ 190 (674)
.|+++|+++++||+++|+||||||||||+|+|+|+++ +.+|+|.+++ +.++|++|+......+||.||+.+
T Consensus 283 ~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~~--------~~i~~~~q~~~~~~~~tv~~~l~~ 353 (538)
T 3ozx_A 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT-ADEGSVTPEK--------QILSYKPQRIFPNYDGTVQQYLEN 353 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-CSBCCEESSC--------CCEEEECSSCCCCCSSBHHHHHHH
T ss_pred EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECC--------eeeEeechhcccccCCCHHHHHHH
Confidence 5788899999999999999999999999999999884 5699998764 358999999776667899999987
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 044602 191 AAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSAN 270 (674)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~ 270 (674)
...... .. ....++++++.++|.+..++.++ +|||||||||+|||||+.+|++|||||||+|||+.++.
T Consensus 354 ~~~~~~----~~--~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~ 422 (538)
T 3ozx_A 354 ASKDAL----ST--SSWFFEEVTKRLNLHRLLESNVN-----DLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERY 422 (538)
T ss_dssp HCSSTT----CT--TSHHHHHTTTTTTGGGCTTSBGG-----GCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHH
T ss_pred hhhhcc----ch--hHHHHHHHHHHcCCHHHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHH
Confidence 421110 01 12357889999999888877654 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-CCcEEEEEecCCchHHHhhcCEEEEEeC--CEEEEecChhHHH
Q 044602 271 KLIQVLQKVAK-AGRTVITTIHQPSSRMFHMFDKLLLISE--GYPVYYGKARESM 322 (674)
Q Consensus 271 ~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~--G~iv~~G~~~~~~ 322 (674)
.+++.|+++++ .|+|||++|||+. ++..+||||++|++ |.....+++.++.
T Consensus 423 ~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 423 IVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 99999999976 5899999999975 57889999999986 5677777766543
No 51
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=1.2e-35 Score=345.68 Aligned_cols=206 Identities=29% Similarity=0.381 Sum_probs=140.8
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHH---------------------HHHHcCCCCC------CccEEEECCEeC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLL---------------------KIVGGRLTDD------VKGNITYNDIPY 161 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl---------------------~~L~G~~~~~------~~G~I~~~g~~~ 161 (674)
+.+|+||||+|++||+++|+||||||||||+ ++++|...+. ..|.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 5689999999999999999999999999998 7777765432 146677777665
Q ss_pred ChhccccEEEEccCCC-------------------CCCCCCHHHHHHHHHhhcCCCCCCHHHHH------HHHHHHHHHc
Q 044602 162 NPALKRRIGFVTQDDV-------------------LLPQLTVEETLVFAAFLRLPGNMNRQQKY------ARVQMILKEL 216 (674)
Q Consensus 162 ~~~~~~~igyv~Q~~~-------------------l~~~lTV~e~l~~~~~~~~~~~~~~~~~~------~~v~~~l~~l 216 (674)
....++.+|+|+|... .++.+||.||+.+......... ...... ....++++.+
T Consensus 111 ~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~ 189 (670)
T 3ux8_A 111 SRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK-EAQIARLILREIRDRLGFLQNV 189 (670)
T ss_dssp ----CCBHHHHTTCC-------------------------CC---------------------------CHHHHHHHHHT
T ss_pred hccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchh-hhHHHHHHHHHHHHHHHHHHHc
Confidence 4333445666655432 2467899999987532221110 000000 1122458889
Q ss_pred CCCcc-ccccccCCccCccCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCC
Q 044602 217 GLERC-RHTRVGGGFIKGISGGERKRTSIGYEILVDPS--LLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQP 293 (674)
Q Consensus 217 gL~~~-~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~--illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 293 (674)
||.+. .+++++ +|||||||||+|||||+.+|+ +|||||||+|||+.++..+++.|++++++|.|||++|||+
T Consensus 190 gL~~~~~~~~~~-----~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~ 264 (670)
T 3ux8_A 190 GLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE 264 (670)
T ss_dssp TCTTCCTTCBGG-----GSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred CCchhhhcCCcc-----cCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 99764 466554 899999999999999999998 9999999999999999999999999988899999999997
Q ss_pred chHHHhhcCEEEEE------eCCEEEEecChhHHH
Q 044602 294 SSRMFHMFDKLLLI------SEGYPVYYGKARESM 322 (674)
Q Consensus 294 ~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 322 (674)
. . ...||++++| ++|++++.|+++++.
T Consensus 265 ~-~-~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 265 D-T-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp H-H-HHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred H-H-HhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 5 3 4569999999 899999999999875
No 52
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.1e-35 Score=333.88 Aligned_cols=192 Identities=23% Similarity=0.276 Sum_probs=161.8
Q ss_pred ccceeeeEEEEeCC-----eEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCC
Q 044602 109 KHILKGITGSICPG-----EILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLT 183 (674)
Q Consensus 109 ~~iL~~vs~~i~~G-----e~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lT 183 (674)
+.+++|+|+++++| |+++|+||||||||||+|+|+|+++ +.+|+. + .+..++|++|+.......|
T Consensus 360 ~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~-p~~G~~------~---~~~~i~~~~q~~~~~~~~t 429 (608)
T 3j16_B 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK-PDEGQD------I---PKLNVSMKPQKIAPKFPGT 429 (608)
T ss_dssp EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC-CSBCCC------C---CSCCEEEECSSCCCCCCSB
T ss_pred ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC-CCCCcC------c---cCCcEEEecccccccCCcc
Confidence 35789999999999 7899999999999999999999885 457862 2 1346999999976655679
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 044602 184 VEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSG 263 (674)
Q Consensus 184 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsg 263 (674)
|+|++.... + .... ..+.++++++.++|.+..++.+ .+|||||||||+|||||+.+|+||||||||+|
T Consensus 430 v~e~~~~~~--~--~~~~---~~~~~~~~l~~l~l~~~~~~~~-----~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~g 497 (608)
T 3j16_B 430 VRQLFFKKI--R--GQFL---NPQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPSAY 497 (608)
T ss_dssp HHHHHHHHC--S--STTT---SHHHHHHTHHHHTSTTTSSSBS-----SSCCHHHHHHHHHHHHTTSCCSEEEECCTTTT
T ss_pred HHHHHHHHh--h--cccc---cHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCCCC
Confidence 999876432 1 1111 1235678999999998888765 48999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHh-CCcEEEEEecCCchHHHhhcCEEEEEeC--CEEEEecChhHHHH
Q 044602 264 LDSTSANKLIQVLQKVAK-AGRTVITTIHQPSSRMFHMFDKLLLISE--GYPVYYGKARESME 323 (674)
Q Consensus 264 LD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~--G~iv~~G~~~~~~~ 323 (674)
||+.++..+.+.|+++++ .|+|||++|||+. ++..+||||++|++ |+++..|+|++++.
T Consensus 498 LD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 498 LDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLLT 559 (608)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCCCeEEecCChHHHhh
Confidence 999999999999999864 5999999999975 57889999999996 89999999998864
No 53
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=4.7e-34 Score=338.04 Aligned_cols=185 Identities=22% Similarity=0.314 Sum_probs=156.7
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCC-CCCCCCCHHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDD-VLLPQLTVEET 187 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~-~l~~~lTV~e~ 187 (674)
+.+|+|+||++++||+++|+||||||||||+|+|+| |+| +|.+.... .+++|++|+. .+++.+||.||
T Consensus 448 ~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag-------G~i--~g~~~~~~--~~~~~v~q~~~~~~~~ltv~e~ 516 (986)
T 2iw3_A 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN-------GQV--DGFPTQEE--CRTVYVEHDIDGTHSDTSVLDF 516 (986)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH-------TCS--TTCCCTTT--SCEEETTCCCCCCCTTSBHHHH
T ss_pred EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC-------CCc--CCCccccc--eeEEEEcccccccccCCcHHHH
Confidence 569999999999999999999999999999999995 332 44443222 2478999984 67888999999
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 044602 188 LVFAAFLRLPGNMNRQQKYARVQMILKELGLE-RCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDS 266 (674)
Q Consensus 188 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~ 266 (674)
+.+ ... .. .++++++++.+||. +..+++++ +||||||||++|||+|+.+|++|||||||+|||+
T Consensus 517 l~~--~~~---~~-----~~~v~~~L~~lgL~~~~~~~~~~-----~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~ 581 (986)
T 2iw3_A 517 VFE--SGV---GT-----KEAIKDKLIEFGFTDEMIAMPIS-----ALSGGWKMKLALARAVLRNADILLLDEPTNHLDT 581 (986)
T ss_dssp HHT--TCS---SC-----HHHHHHHHHHTTCCHHHHHSBGG-----GCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCH
T ss_pred HHH--hhc---CH-----HHHHHHHHHHcCCChhhhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCH
Confidence 975 111 11 45788999999995 56676654 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEE-EecChhHHHH
Q 044602 267 TSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPV-YYGKARESME 323 (674)
Q Consensus 267 ~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~~ 323 (674)
.++..+.+.|++ .|+|||++|||.. .+.++||++++|++|+++ +.|+++++.+
T Consensus 582 ~~~~~l~~~L~~---~g~tvIivSHdl~-~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 582 VNVAWLVNYLNT---CGITSITISHDSV-FLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp HHHHHHHHHHHH---SCSEEEEECSCHH-HHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred HHHHHHHHHHHh---CCCEEEEEECCHH-HHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 999999999988 5899999999965 577899999999999997 7899988764
No 54
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1.1e-34 Score=328.54 Aligned_cols=181 Identities=23% Similarity=0.347 Sum_probs=151.1
Q ss_pred cceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEE---------EECCEeCCh------hccccEEEEcc
Q 044602 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNI---------TYNDIPYNP------ALKRRIGFVTQ 174 (674)
Q Consensus 110 ~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I---------~~~g~~~~~------~~~~~igyv~Q 174 (674)
.+|+|+| ++++||+++|+||||||||||+|+|+|.+. +.+|++ .++|.++.. ..+..+++++|
T Consensus 36 ~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~-p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q 113 (538)
T 1yqt_A 36 FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLI-PNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQ 113 (538)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC-CCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECS
T ss_pred ccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhh
Confidence 4899999 999999999999999999999999999874 458885 456665431 11346899999
Q ss_pred CCCCCCC---CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhC
Q 044602 175 DDVLLPQ---LTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVD 251 (674)
Q Consensus 175 ~~~l~~~---lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~ 251 (674)
+..+++. .||.|++.... ..++++++++.+||.+..++.++ +|||||||||+||+||+.+
T Consensus 114 ~~~~~~~~~~~~v~e~~~~~~------------~~~~~~~~l~~lgl~~~~~~~~~-----~LSgGekQRv~iAraL~~~ 176 (538)
T 1yqt_A 114 YVDLIPKAVKGKVIELLKKAD------------ETGKLEEVVKALELENVLEREIQ-----HLSGGELQRVAIAAALLRN 176 (538)
T ss_dssp CGGGSGGGCCSBHHHHHHHHC------------SSSCHHHHHHHTTCTTTTTSBGG-----GCCHHHHHHHHHHHHHHSC
T ss_pred hhhhcchhhhccHHHHHhhhh------------HHHHHHHHHHHcCCChhhhCChh-----hCCHHHHHHHHHHHHHhcC
Confidence 7543332 38999885321 11357889999999888777654 8999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCC
Q 044602 252 PSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEG 310 (674)
Q Consensus 252 P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 310 (674)
|++|||||||++||+.++..+.+.|++++++|+|||++|||.. .+.++||+|++|++|
T Consensus 177 P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~-~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 177 ATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLA-VLDYLSDIIHVVYGE 234 (538)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEE
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEcCc
Confidence 9999999999999999999999999999888999999999965 578899999999865
No 55
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=1.3e-34 Score=331.76 Aligned_cols=180 Identities=24% Similarity=0.356 Sum_probs=151.2
Q ss_pred cceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEE---------EECCEeCCh------hccccEEEEcc
Q 044602 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNI---------TYNDIPYNP------ALKRRIGFVTQ 174 (674)
Q Consensus 110 ~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I---------~~~g~~~~~------~~~~~igyv~Q 174 (674)
.+|+|+| ++++||+++|+||||||||||||+|+|.+.+ .+|++ .++|.++.. ..+..+++++|
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p-~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q 183 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIP-NLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQ 183 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCC-CTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECS
T ss_pred eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCC-CCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeec
Confidence 4899999 9999999999999999999999999998854 58986 456765432 12346889998
Q ss_pred CCCC----CCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhh
Q 044602 175 DDVL----LPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILV 250 (674)
Q Consensus 175 ~~~l----~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~ 250 (674)
+..+ +.. ||.||+... . ..++++++++.+||.+..++.++ +|||||||||+|||||+.
T Consensus 184 ~~~~~~~~~~~-tv~e~l~~~-------~-----~~~~~~~~L~~lgL~~~~~~~~~-----~LSGGekQRvaIAraL~~ 245 (607)
T 3bk7_A 184 YVDLLPKAVKG-KVRELLKKV-------D-----EVGKFEEVVKELELENVLDRELH-----QLSGGELQRVAIAAALLR 245 (607)
T ss_dssp CGGGGGGTCCS-BHHHHHHHT-------C-----CSSCHHHHHHHTTCTTGGGSBGG-----GCCHHHHHHHHHHHHHHS
T ss_pred hhhhchhhccc-cHHHHhhhh-------H-----HHHHHHHHHHHcCCCchhCCChh-----hCCHHHHHHHHHHHHHhc
Confidence 7433 333 999998641 0 01357889999999988887764 899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCC
Q 044602 251 DPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEG 310 (674)
Q Consensus 251 ~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 310 (674)
+|++|||||||++||+.++..+.+.|++++++|+|||++|||+. .+..+||+|++|+++
T Consensus 246 ~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~-~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 246 KAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLA-VLDYLSDVIHVVYGE 304 (607)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEESC
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHHhhCCEEEEECCC
Confidence 99999999999999999999999999999888999999999975 577899999999865
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=2.4e-34 Score=340.43 Aligned_cols=208 Identities=23% Similarity=0.361 Sum_probs=161.5
Q ss_pred eeEEEEeEEEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 68 IFLKFEDVEYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 68 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..++++|++|+|+. +.+++|+|+||++++||+++|+||||||||||+|+|+|.+.
T Consensus 670 ~mL~v~nLs~~Y~g-------------------------~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~ 724 (986)
T 2iw3_A 670 AIVKVTNMEFQYPG-------------------------TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL 724 (986)
T ss_dssp EEEEEEEEEECCTT-------------------------CSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC
T ss_pred ceEEEEeeEEEeCC-------------------------CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46899999987631 12568999999999999999999999999999999999874
Q ss_pred CCCccEEEECCEeCChhccccEEEEccCCCC----CCCCCHHHHHHHHHhhc------------C-C-------------
Q 044602 148 DDVKGNITYNDIPYNPALKRRIGFVTQDDVL----LPQLTVEETLVFAAFLR------------L-P------------- 197 (674)
Q Consensus 148 ~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l----~~~lTV~e~l~~~~~~~------------~-~------------- 197 (674)
+.+|+|.++|. ..+||++|++.. ....|+.|++.+..... . +
T Consensus 725 -P~sG~I~~~~~-------~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~ 796 (986)
T 2iw3_A 725 -PTSGEVYTHEN-------CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIE 796 (986)
T ss_dssp -CSEEEEEECTT-------CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEET
T ss_pred -CCceEEEEcCc-------cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccc
Confidence 56999999862 258999997521 22358888876532100 0 0
Q ss_pred --------------------------------------CCC--------C--------------------------HHHH
Q 044602 198 --------------------------------------GNM--------N--------------------------RQQK 205 (674)
Q Consensus 198 --------------------------------------~~~--------~--------------------------~~~~ 205 (674)
... . +...
T Consensus 797 g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~ 876 (986)
T 2iw3_A 797 GTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLT 876 (986)
T ss_dssp TEEEEEEEEEEEEEETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred cchhhhhhhhhhhhhcccchhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhH
Confidence 000 0 0001
Q ss_pred HHHHHHHHHHcCCCcc--ccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 044602 206 YARVQMILKELGLERC--RHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAG 283 (674)
Q Consensus 206 ~~~v~~~l~~lgL~~~--~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g 283 (674)
.++++++++.+||.+. .++++ ++|||||||||+|||+|+.+|++|||||||+|||+.+...+.+.|+++ |
T Consensus 877 ~~~i~~~Le~lGL~~~~~~~~~~-----~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g 948 (986)
T 2iw3_A 877 RKEIEEHCSMLGLDPEIVSHSRI-----RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---E 948 (986)
T ss_dssp HHHHHHHHHHTTCCHHHHHHSCG-----GGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---S
T ss_pred HHHHHHHHHHcCCCchhhcCCCc-----cccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---C
Confidence 3467889999999753 45554 489999999999999999999999999999999999999999888754 6
Q ss_pred cEEEEEecCCchHHHhhcCEEEEEeCCEEEEecC
Q 044602 284 RTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGK 317 (674)
Q Consensus 284 ~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 317 (674)
.|||++|||+. .+.++||++++|++|+++..|+
T Consensus 949 ~tVIiISHD~e-~v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 949 GGVIIITHSAE-FTKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp SEEEEECSCHH-HHTTTCCEEECCBTTBCCC---
T ss_pred CEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 79999999965 4678999999999999988774
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=1.6e-33 Score=327.90 Aligned_cols=196 Identities=30% Similarity=0.410 Sum_probs=150.3
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHH----------------------cCCCCCCccEEEECCEeCChhc-
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVG----------------------GRLTDDVKGNITYNDIPYNPAL- 165 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~----------------------G~~~~~~~G~I~~~g~~~~~~~- 165 (674)
+.+|+|||++|++||++||+||||||||||+++|. |.. ...|.|.++|.++....
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~--~~~~~i~~~~~~~~~~~~ 412 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLE--HLDKVIDIDQSPIGRTPR 412 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGG--GCSEEEECCSSCSCSSTT
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccc--ccCceeEeccccCCCCCC
Confidence 46899999999999999999999999999998754 211 12567888887653100
Q ss_pred --------------------------------------------cccEEEEccCCCCCC---------------------
Q 044602 166 --------------------------------------------KRRIGFVTQDDVLLP--------------------- 180 (674)
Q Consensus 166 --------------------------------------------~~~igyv~Q~~~l~~--------------------- 180 (674)
....|+++|+..+++
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (670)
T 3ux8_A 413 SNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEV 492 (670)
T ss_dssp CCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTC
T ss_pred cchhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhe
Confidence 012344555433332
Q ss_pred -----------CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCccCccCHHHHHHHHHHHHH
Q 044602 181 -----------QLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER-CRHTRVGGGFIKGISGGERKRTSIGYEI 248 (674)
Q Consensus 181 -----------~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~iA~aL 248 (674)
.+||.||+.+.... ...+++.+.++.+||.+ ..++. +.+|||||||||+|||||
T Consensus 493 ~~~~~~~~~~~~ltv~e~l~~~~~~---------~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~iAraL 558 (670)
T 3ux8_A 493 TYKGKNIAEVLDMTVEDALDFFASI---------PKIKRKLETLYDVGLGYMKLGQP-----ATTLSGGEAQRVKLAAEL 558 (670)
T ss_dssp CBTTBCHHHHHTSBHHHHHHHTTTC---------HHHHHHHHHHHHTTCTTSBTTCC-----GGGCCHHHHHHHHHHHHH
T ss_pred eecCCCHHHHhhCCHHHHHHHHHHh---------hhHHHHHHHHHHcCCchhhccCC-----chhCCHHHHHHHHHHHHH
Confidence 47999999875311 12245667888899864 33444 358999999999999999
Q ss_pred hhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEE------eCCEEEEecChh
Q 044602 249 LVDP---SLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLI------SEGYPVYYGKAR 319 (674)
Q Consensus 249 ~~~P---~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~ 319 (674)
+.+| ++|||||||+|||+.++..+++.|++++++|+|||++|||+.. .+.||+|++| ++|++++.|+++
T Consensus 559 ~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~--~~~~d~i~~l~~~~g~~~G~i~~~g~~~ 636 (670)
T 3ux8_A 559 HRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDV--IKTADYIIDLGPEGGDRGGQIVAVGTPE 636 (670)
T ss_dssp HSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHH--HTTCSEEEEEESSSGGGCCEEEEEECHH
T ss_pred hhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH--HHhCCEEEEecCCcCCCCCEEEEecCHH
Confidence 9987 5999999999999999999999999998889999999999853 4679999999 899999999999
Q ss_pred HHH
Q 044602 320 ESM 322 (674)
Q Consensus 320 ~~~ 322 (674)
++.
T Consensus 637 ~~~ 639 (670)
T 3ux8_A 637 EVA 639 (670)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.9e-32 Score=313.25 Aligned_cols=187 Identities=26% Similarity=0.327 Sum_probs=144.6
Q ss_pred cceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEE-----------EECCEeCCh----hcccc--EEEE
Q 044602 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNI-----------TYNDIPYNP----ALKRR--IGFV 172 (674)
Q Consensus 110 ~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I-----------~~~g~~~~~----~~~~~--igyv 172 (674)
..|++++ .+++||+++|+||||||||||||+|+|++. +.+|+| .+.|.++.. ...+. ..+.
T Consensus 92 ~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~-P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 169 (608)
T 3j16_B 92 FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQK-PNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIK 169 (608)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC-CCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEE
T ss_pred eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCC-CCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhc
Confidence 3677777 689999999999999999999999999885 458988 333433221 11122 2333
Q ss_pred ccCCCC------CCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHH
Q 044602 173 TQDDVL------LPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGY 246 (674)
Q Consensus 173 ~Q~~~l------~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~ 246 (674)
+|.... -+..++.+++.... . ...++++++++.+||.+..++.++ +|||||||||+||+
T Consensus 170 ~~~~~~~~~~~~~~~~~v~~~l~~~~------~----~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGe~Qrv~iAr 234 (608)
T 3j16_B 170 PQYVDNIPRAIKGPVQKVGELLKLRM------E----KSPEDVKRYIKILQLENVLKRDIE-----KLSGGELQRFAIGM 234 (608)
T ss_dssp CCCTTTHHHHCSSSSSHHHHHHHHHC------C----SCHHHHHHHHHHHTCTGGGGSCTT-----TCCHHHHHHHHHHH
T ss_pred hhhhhhhhhhhcchhhHHHHHHhhhh------h----hHHHHHHHHHHHcCCcchhCCChH-----HCCHHHHHHHHHHH
Confidence 443211 12235666654321 1 112568899999999988887764 89999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEE
Q 044602 247 EILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVY 314 (674)
Q Consensus 247 aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 314 (674)
||+.+|++|+|||||++||+.++..+.+.|++++++|+|||+++|++. ++..++|+|++|++|..++
T Consensus 235 aL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~-~~~~~~drv~vl~~~~~~~ 301 (608)
T 3j16_B 235 SCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLS-VLDYLSDFVCIIYGVPSVY 301 (608)
T ss_dssp HHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHH-HHHHHCSEEEEEESCTTTE
T ss_pred HHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcccc
Confidence 999999999999999999999999999999999888999999999975 5788999999999876444
No 59
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=3.5e-32 Score=307.69 Aligned_cols=173 Identities=21% Similarity=0.281 Sum_probs=139.6
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEE-----------EECCEeCChh----c--cccEEEEccC----CC
Q 044602 119 ICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNI-----------TYNDIPYNPA----L--KRRIGFVTQD----DV 177 (674)
Q Consensus 119 i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I-----------~~~g~~~~~~----~--~~~igyv~Q~----~~ 177 (674)
.++||++||+||||||||||+|+|+|.+.| .+|+| .++|.++... . ...+..+.|. +.
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p-~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIP-NFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASK 100 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCC-CTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGT
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCC-CCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhh
Confidence 469999999999999999999999998854 58998 6777765321 1 1234444444 33
Q ss_pred CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEE
Q 044602 178 LLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLL 257 (674)
Q Consensus 178 l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illL 257 (674)
++.. ||+|++... +..++++++++.+|+.+..++.++ +|||||||||+|||||+.+|+||+|
T Consensus 101 ~~~~-~v~~~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~~-----~LSgGe~Qrv~iA~aL~~~p~illl 162 (538)
T 3ozx_A 101 FLKG-TVNEILTKI------------DERGKKDEVKELLNMTNLWNKDAN-----ILSGGGLQRLLVAASLLREADVYIF 162 (538)
T ss_dssp TCCS-BHHHHHHHH------------CCSSCHHHHHHHTTCGGGTTSBGG-----GCCHHHHHHHHHHHHHHSCCSEEEE
T ss_pred hccC-cHHHHhhcc------------hhHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 3443 888876422 011356789999999988887764 8999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEE
Q 044602 258 DEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYP 312 (674)
Q Consensus 258 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 312 (674)
||||++||+.++..+.+.|+++++ |+|||+++|++. ++..+||+|++|++|..
T Consensus 163 DEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~-~~~~~~d~i~vl~~~~~ 215 (538)
T 3ozx_A 163 DQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLI-VLDYLTDLIHIIYGESS 215 (538)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHH-HHHHHCSEEEEEEEETT
T ss_pred ECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChH-HHHhhCCEEEEecCCcc
Confidence 999999999999999999999976 999999999975 68889999999987543
No 60
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.97 E-value=1.2e-30 Score=308.58 Aligned_cols=198 Identities=28% Similarity=0.430 Sum_probs=154.1
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHH---------HHHHcCCCC-----CCc------cEEEECCEeCChh----
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLL---------KIVGGRLTD-----DVK------GNITYNDIPYNPA---- 164 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl---------~~L~G~~~~-----~~~------G~I~~~g~~~~~~---- 164 (674)
...|+|||+++++||+++|+||||||||||+ +.+.+.... ..+ +.+.+++.++...
T Consensus 597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~ 676 (916)
T 3pih_A 597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSN 676 (916)
T ss_dssp STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCC
T ss_pred cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccc
Confidence 4579999999999999999999999999997 445443211 112 3355555443210
Q ss_pred -----------------------------------------ccccEEEEccCCCCCCC----------------------
Q 044602 165 -----------------------------------------LKRRIGFVTQDDVLLPQ---------------------- 181 (674)
Q Consensus 165 -----------------------------------------~~~~igyv~Q~~~l~~~---------------------- 181 (674)
..+..|++.|+..++|.
T Consensus 677 ~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~ 756 (916)
T 3pih_A 677 PATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITY 756 (916)
T ss_dssp HHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCB
T ss_pred ccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhh
Confidence 01235788888766653
Q ss_pred ----------CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCccCccCHHHHHHHHHHHHHhh
Q 044602 182 ----------LTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC-RHTRVGGGFIKGISGGERKRTSIGYEILV 250 (674)
Q Consensus 182 ----------lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~iA~aL~~ 250 (674)
+||.|++.|... . ....++.++|+.+||... .+. .+.+|||||||||+|||||+.
T Consensus 757 ~g~~i~~vl~~tv~eal~f~~~------~---~~~~~~~~~L~~vGL~~~~lgq-----~~~~LSGGErQRV~LAraL~~ 822 (916)
T 3pih_A 757 KGKNISDILDMTVDEALEFFKN------I---PSIKRTLQVLHDVGLGYVKLGQ-----PATTLSGGEAQRIKLASELRK 822 (916)
T ss_dssp TTBCHHHHHSSBHHHHHHHTTT------C---HHHHHHHHHHHHTTGGGSBTTC-----CSTTCCHHHHHHHHHHHHHTS
T ss_pred ccCCHHHHhhCCHHHHHHHHhc------c---hhHHHHHHHHHHcCCchhhccC-----CccCCCHHHHHHHHHHHHHhh
Confidence 678888887531 1 123567789999999642 233 345899999999999999998
Q ss_pred CC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEE------eCCEEEEecChhHH
Q 044602 251 DP---SLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLI------SEGYPVYYGKARES 321 (674)
Q Consensus 251 ~P---~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~ 321 (674)
+| +||||||||+|||+.+...+++.|++++++|.|||+|+|+++ . .+.||+|++| ++|++++.|+++++
T Consensus 823 ~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~-~-i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel 900 (916)
T 3pih_A 823 RDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD-V-IKNADHIIDLGPEGGKEGGYIVATGTPEEI 900 (916)
T ss_dssp CCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-H-HTTCSEEEEEESSSGGGCCEEEEEESHHHH
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-H-HHhCCEEEEecCCCCCCCCEEEEEcCHHHH
Confidence 75 799999999999999999999999999988999999999975 3 4669999999 89999999999998
Q ss_pred H
Q 044602 322 M 322 (674)
Q Consensus 322 ~ 322 (674)
.
T Consensus 901 ~ 901 (916)
T 3pih_A 901 A 901 (916)
T ss_dssp H
T ss_pred H
Confidence 5
No 61
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.97 E-value=5.4e-31 Score=309.29 Aligned_cols=196 Identities=29% Similarity=0.411 Sum_probs=149.7
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHH-HHcCCC-------C-----------------CCcc-------EEEECC
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKI-VGGRLT-------D-----------------DVKG-------NITYND 158 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~-L~G~~~-------~-----------------~~~G-------~I~~~g 158 (674)
+|+|||++|++||++||+|+||||||||++. |+|.+. + +.+| .|.++|
T Consensus 512 ~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~i~vdq 591 (842)
T 2vf7_A 512 NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSARLGGDLAQITRLVRVDQ 591 (842)
T ss_dssp TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCCEEEESGGGCCEEEEECS
T ss_pred ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccccCcccccceEEEECC
Confidence 6999999999999999999999999999996 665321 1 1356 788998
Q ss_pred EeCChh--------------cc---------cc----------------------EEEEccCCCCCC-------------
Q 044602 159 IPYNPA--------------LK---------RR----------------------IGFVTQDDVLLP------------- 180 (674)
Q Consensus 159 ~~~~~~--------------~~---------~~----------------------igyv~Q~~~l~~------------- 180 (674)
.++... +| +. .|++..+..+++
T Consensus 592 ~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~r 671 (842)
T 2vf7_A 592 KPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVELLFLPSVYAPCPVCHGTR 671 (842)
T ss_dssp SCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETTCSSSCEEEECTTTTTCC
T ss_pred eeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchhhhcCCccceecccccCcc
Confidence 876311 11 11 122222222222
Q ss_pred -----------C--------CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCccCccCHHHHH
Q 044602 181 -----------Q--------LTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERC-RHTRVGGGFIKGISGGERK 240 (674)
Q Consensus 181 -----------~--------lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerq 240 (674)
. +|+.|++.|.. . . ...+++.++|+.+||... .++.+ .+|||||||
T Consensus 672 ~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~------~-~--~~~~~~~~~L~~~gL~~~~l~~~~-----~~LSGGekQ 737 (842)
T 2vf7_A 672 YNAETLEVEYRGKNIADVLALTVDEAHDFFA------D-E--SAIFRALDTLREVGLGYLRLGQPA-----TELSGGEAQ 737 (842)
T ss_dssp BCTTGGGCCBTTBCHHHHHTCBHHHHHHHTT------T-S--HHHHHHHHHHHHTTCTTSBTTCCG-----GGCCHHHHH
T ss_pred cchhhHhhhhcCCCHHHHHhccHHHHHHHhh------c-c--hHHHHHHHHHHHcCCCcccccCCc-----ccCCHHHHH
Confidence 2 34555544421 1 1 123467899999999863 45544 489999999
Q ss_pred HHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEE------eCCE
Q 044602 241 RTSIGYEILVD---PSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLI------SEGY 311 (674)
Q Consensus 241 Rv~iA~aL~~~---P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~ 311 (674)
||+||++|+.+ |+||||||||+|||+.+...+++.|++++++|.|||+++|++. .+ +.||+|++| ++|+
T Consensus 738 Rv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~-~i-~~aDrii~L~p~~g~~~G~ 815 (842)
T 2vf7_A 738 RIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQ-VV-AASDWVLDIGPGAGEDGGR 815 (842)
T ss_dssp HHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCSEEEEECSSSGGGCCS
T ss_pred HHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HH-HhCCEEEEECCCCCCCCCE
Confidence 99999999996 7999999999999999999999999999988999999999975 45 789999999 7999
Q ss_pred EEEecChhHHH
Q 044602 312 PVYYGKARESM 322 (674)
Q Consensus 312 iv~~G~~~~~~ 322 (674)
+++.|+++++.
T Consensus 816 Iv~~g~~~el~ 826 (842)
T 2vf7_A 816 LVAQGTPAEVA 826 (842)
T ss_dssp EEEEECHHHHT
T ss_pred EEEEcCHHHHH
Confidence 99999999874
No 62
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.97 E-value=8.3e-31 Score=308.06 Aligned_cols=197 Identities=30% Similarity=0.431 Sum_probs=153.6
Q ss_pred cceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHH-cCC---------CC----CCcc------EEEECCEeCChh-----
Q 044602 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVG-GRL---------TD----DVKG------NITYNDIPYNPA----- 164 (674)
Q Consensus 110 ~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~-G~~---------~~----~~~G------~I~~~g~~~~~~----- 164 (674)
..|+|||++|++||+++|+|+||||||||++.|. |.+ .+ ...| .|.++|.++...
T Consensus 638 ~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~p 717 (972)
T 2r6f_A 638 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNP 717 (972)
T ss_dssp SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCH
T ss_pred cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccc
Confidence 4799999999999999999999999999999853 211 11 0123 488888776310
Q ss_pred ---------c---------cccEEEEccCCCCC----------------------C------------------------
Q 044602 165 ---------L---------KRRIGFVTQDDVLL----------------------P------------------------ 180 (674)
Q Consensus 165 ---------~---------~~~igyv~Q~~~l~----------------------~------------------------ 180 (674)
. .+.+||++|...+. +
T Consensus 718 aty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~ 797 (972)
T 2r6f_A 718 ATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYK 797 (972)
T ss_dssp HHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBT
T ss_pred hhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhcc
Confidence 0 13357777743211 1
Q ss_pred --------CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCccCccCHHHHHHHHHHHHHhhC
Q 044602 181 --------QLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER-CRHTRVGGGFIKGISGGERKRTSIGYEILVD 251 (674)
Q Consensus 181 --------~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~ 251 (674)
.+||.|++.|... . . ..+++.++++.+||.. ..++.+ .+|||||||||+||++|+.+
T Consensus 798 g~sI~dvl~ltv~e~l~~~~~------~-~--~~~~~~~~L~~~gL~~~~l~~~~-----~~LSGGekQRv~LAraL~~~ 863 (972)
T 2r6f_A 798 GKNIAEVLDMTVEDALDFFAS------I-P--KIKRKLETLYDVGLGYMKLGQPA-----TTLSGGEAQRVKLAAELHRR 863 (972)
T ss_dssp TBCHHHHHTSBHHHHHHHTCS------C-H--HHHHHHHHHHHTTCSSSBTTCCG-----GGCCHHHHHHHHHHHHHSSC
T ss_pred CCCHHHhhhcCHHHHHHHHhc------c-h--hHHHHHHHHHHcCCCcccccCch-----hhCCHHHHHHHHHHHHHhcC
Confidence 3578888876421 1 1 1234578999999986 556554 48999999999999999987
Q ss_pred C---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEE------eCCEEEEecChhHHH
Q 044602 252 P---SLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLI------SEGYPVYYGKARESM 322 (674)
Q Consensus 252 P---~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 322 (674)
| ++|||||||+|||+.+...+++.|++++++|.|||+++|++.. .+.||+|++| ++|++++.|+++++.
T Consensus 864 p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~--i~~aDrIivL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 864 SNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDV--IKTADYIIDLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp CCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHH--HTTCSEEEEECSSSTTSCCSEEEEESHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHH--HHhCCEEEEEcCCCCCCCCEEEEecCHHHHH
Confidence 5 9999999999999999999999999999889999999999753 4689999999 789999999999874
No 63
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.97 E-value=3.3e-30 Score=304.05 Aligned_cols=198 Identities=27% Similarity=0.394 Sum_probs=151.2
Q ss_pred cceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHH-c----CCCC--CCcc-------------EEEECCEeCChh-----
Q 044602 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVG-G----RLTD--DVKG-------------NITYNDIPYNPA----- 164 (674)
Q Consensus 110 ~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~-G----~~~~--~~~G-------------~I~~~g~~~~~~----- 164 (674)
.+|+|||++|++||+++|+|+||||||||+++|. | .+.+ +..| .|.+++.++...
T Consensus 656 ~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~i~idq~pig~~~rs~p 735 (993)
T 2ygr_A 656 HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDKLVRIDQSPIGRTPRSNP 735 (993)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSEEECCCCSCSCSSTTCCH
T ss_pred ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccceEEEecCcccccCcccch
Confidence 4799999999999999999999999999999853 2 2211 1123 355666554210
Q ss_pred ------------------ccccEEEEccCCCC----------------------CC------------------------
Q 044602 165 ------------------LKRRIGFVTQDDVL----------------------LP------------------------ 180 (674)
Q Consensus 165 ------------------~~~~igyv~Q~~~l----------------------~~------------------------ 180 (674)
..+..||++|...+ ++
T Consensus 736 aty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce~c~G~r~~~e~l~v~~~ 815 (993)
T 2ygr_A 736 ATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCEVCQGARYNRETLEVHYK 815 (993)
T ss_dssp HHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECTTTTTCSBCGGGGGCCBT
T ss_pred hhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeehhccccccchhhhhhhcc
Confidence 01345777764321 11
Q ss_pred --------CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCccCccCHHHHHHHHHHHHHhhC
Q 044602 181 --------QLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLER-CRHTRVGGGFIKGISGGERKRTSIGYEILVD 251 (674)
Q Consensus 181 --------~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~ 251 (674)
.+||.|++.|... . . ..+++.++++.+||.. ..++.+ .+|||||||||+||++|+.+
T Consensus 816 g~si~dvl~ltv~e~l~~~~~------~-~--~~~~~~~~L~~lgL~~~~l~~~~-----~~LSGGekQRv~LAraL~~~ 881 (993)
T 2ygr_A 816 GKTVSEVLDMSIEEAAEFFEP------I-A--GVHRYLRTLVDVGLGYVRLGQPA-----PTLSGGEAQRVKLASELQKR 881 (993)
T ss_dssp TBCHHHHHSSBHHHHHHHSTT------C-H--HHHHHHHHHHHTTGGGSBTTCCG-----GGSCHHHHHHHHHHHHHSSC
T ss_pred CCCHHHHhhccHHHHHHHhhc------c-h--HHHHHHHHHHHcCCCcccccCcc-----ccCCHHHHHHHHHHHHHHhC
Confidence 2577777776421 1 1 1234578999999976 455554 48999999999999999987
Q ss_pred C---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEE------eCCEEEEecChhHHH
Q 044602 252 P---SLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLI------SEGYPVYYGKARESM 322 (674)
Q Consensus 252 P---~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 322 (674)
| ++|||||||+|||+.+...+++.|++++++|.|||+++|++.. .+.||+|++| ++|++++.|+++++.
T Consensus 882 p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~--i~~aDrIivL~p~gg~~~G~Iv~~G~~~el~ 959 (993)
T 2ygr_A 882 STGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDV--IKTSDWIIDLGPEGGAGGGTVVAQGTPEDVA 959 (993)
T ss_dssp CCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHH--HTTCSEEEEEESSSTTSCSEEEEEECHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHH--HHhCCEEEEECCCcCCCCCEEEEecCHHHHH
Confidence 5 9999999999999999999999999998889999999999753 4789999999 689999999999875
Q ss_pred H
Q 044602 323 E 323 (674)
Q Consensus 323 ~ 323 (674)
+
T Consensus 960 ~ 960 (993)
T 2ygr_A 960 A 960 (993)
T ss_dssp H
T ss_pred h
Confidence 3
No 64
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.96 E-value=6.6e-29 Score=272.60 Aligned_cols=203 Identities=16% Similarity=0.232 Sum_probs=148.5
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC-------------------------------------CCc
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD-------------------------------------DVK 151 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~-------------------------------------~~~ 151 (674)
..+++++|+++++| +++|+|||||||||||++|+++... +.+
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~ 126 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR 126 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence 34799999999999 9999999999999999999776531 236
Q ss_pred cEEEECCEeCCh----hc-cccEEEEccCCCCCCCCCHHHHHHHHHhhcC-----------------------CCCCC--
Q 044602 152 GNITYNDIPYNP----AL-KRRIGFVTQDDVLLPQLTVEETLVFAAFLRL-----------------------PGNMN-- 201 (674)
Q Consensus 152 G~I~~~g~~~~~----~~-~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~-----------------------~~~~~-- 201 (674)
|++++||++++. .+ +..+++++|++.++.. +..+...|...... .....
T Consensus 127 ~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~ 205 (415)
T 4aby_A 127 GAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSK 205 (415)
T ss_dssp EEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred eEEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 889999999863 23 3348999999876654 56555544321100 00000
Q ss_pred --------------------------------HHHHHHHHHHHHHHcCCCccc----------------cc---cccC--
Q 044602 202 --------------------------------RQQKYARVQMILKELGLERCR----------------HT---RVGG-- 228 (674)
Q Consensus 202 --------------------------------~~~~~~~v~~~l~~lgL~~~~----------------~~---~vg~-- 228 (674)
.....+.+++.++.+++++.. +. .+..
T Consensus 206 ~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 285 (415)
T 4aby_A 206 HPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANP 285 (415)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSS
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCC
Confidence 000123345566667665310 00 1110
Q ss_pred ----CccCc-cCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhc
Q 044602 229 ----GFIKG-ISGGERKRTSIGYEILVDP--SLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMF 301 (674)
Q Consensus 229 ----~~~~~-LSgGerqRv~iA~aL~~~P--~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~ 301 (674)
..++. ||||||||++||++|+.+| ++|||||||+|||+.++..+.+.|++++ +|.|||+|||++. +...|
T Consensus 286 ~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~--~~~~~ 362 (415)
T 4aby_A 286 GEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQ--IAARA 362 (415)
T ss_dssp SCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHH--HHTTC
T ss_pred CCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHH--HHhhc
Confidence 11122 6999999999999999999 9999999999999999999999999998 5999999999973 56789
Q ss_pred CEEEEE----eCCEEEEec
Q 044602 302 DKLLLI----SEGYPVYYG 316 (674)
Q Consensus 302 D~v~~L----~~G~iv~~G 316 (674)
|++++| ++|+++...
T Consensus 363 d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 363 HHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp SEEEEEEEEEETTEEEEEE
T ss_pred CeEEEEEEeccCCceEEEE
Confidence 999999 999987653
No 65
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.1e-31 Score=298.12 Aligned_cols=186 Identities=17% Similarity=0.119 Sum_probs=149.5
Q ss_pred eeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCcc-E-EEECCEeCChhccccEEEEccCCC---CCCCCCHHH
Q 044602 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKG-N-ITYNDIPYNPALKRRIGFVTQDDV---LLPQLTVEE 186 (674)
Q Consensus 112 L~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G-~-I~~~g~~~~~~~~~~igyv~Q~~~---l~~~lTV~e 186 (674)
+.++|+++++||+++|+||||||||||+|+|+|+. .+.+| + |.+||. .++.++||+|+.. +.+.+||+|
T Consensus 128 y~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~-~p~~G~~pI~vdg~-----~~~~i~~vpq~~~l~~~~~~~tv~e 201 (460)
T 2npi_A 128 LEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYA-LKFNAYQPLYINLD-----PQQPIFTVPGCISATPISDILDAQL 201 (460)
T ss_dssp HHHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTT-HHHHCCCCEEEECC-----TTSCSSSCSSCCEEEECCSCCCTTC
T ss_pred hhcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcc-cccCCceeEEEcCC-----ccCCeeeeccchhhcccccccchhh
Confidence 34899999999999999999999999999999987 45689 9 999982 3678999999984 455679999
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHH--HhhCCCE----EEEeC-
Q 044602 187 TLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYE--ILVDPSL----LLLDE- 259 (674)
Q Consensus 187 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~a--L~~~P~i----llLDE- 259 (674)
|+ |+....... . ..+++.++++.+|+.+..+ +.+|||||||||+|||+ |+.+|++ |||||
T Consensus 202 ni-~~~~~~~~~--~---~~~~~~~ll~~~gl~~~~~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEp 268 (460)
T 2npi_A 202 PT-WGQSLTSGA--T---LLHNKQPMVKNFGLERINE-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTP 268 (460)
T ss_dssp TT-CSCBCBSSC--C---SSCCBCCEECCCCSSSGGG-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECC
T ss_pred hh-cccccccCc--c---hHHHHHHHHHHhCCCcccc-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCC
Confidence 98 654321110 0 1234556778888877654 24899999999999999 9999999 99999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCc--h---HHHhhcCE-----EEEEe-CCEEEEecChhHH
Q 044602 260 PTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPS--S---RMFHMFDK-----LLLIS-EGYPVYYGKARES 321 (674)
Q Consensus 260 PTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~--~---~i~~~~D~-----v~~L~-~G~iv~~G~~~~~ 321 (674)
||++||+. ...+.+.+++ .|+|+|+++|+.. . ++.+++|+ |++|+ +|+++ .|+++++
T Consensus 269 Pts~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 269 SISQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp CGGGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred cccccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence 99999999 5555555544 3789999999976 1 45688999 99999 99999 9998765
No 66
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.93 E-value=7.8e-26 Score=244.62 Aligned_cols=83 Identities=28% Similarity=0.434 Sum_probs=76.6
Q ss_pred ccCccCHHHHHHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCE
Q 044602 230 FIKGISGGERKRTSIGYEIL------VDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDK 303 (674)
Q Consensus 230 ~~~~LSgGerqRv~iA~aL~------~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 303 (674)
.+.+|||||||||+||+||+ .+|++|||||||+|||+.++..+++.|++++++|+|||++||++. ..+.||+
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~--~~~~~d~ 353 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE--FSEAFDR 353 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH--HHTTCSC
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH--HHHhCCE
Confidence 45689999999999999999 799999999999999999999999999999888999999999975 3678999
Q ss_pred EEEEeCCEEEE
Q 044602 304 LLLISEGYPVY 314 (674)
Q Consensus 304 v~~L~~G~iv~ 314 (674)
+++|++|+++.
T Consensus 354 ~~~l~~G~i~~ 364 (365)
T 3qf7_A 354 KLRITGGVVVN 364 (365)
T ss_dssp EEEEETTEEC-
T ss_pred EEEEECCEEEe
Confidence 99999999874
No 67
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.93 E-value=2.8e-29 Score=250.68 Aligned_cols=141 Identities=18% Similarity=0.265 Sum_probs=102.3
Q ss_pred ccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCC---hhccccEEEEccCCCCCCCCC
Q 044602 107 DYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN---PALKRRIGFVTQDDVLLPQLT 183 (674)
Q Consensus 107 ~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~---~~~~~~igyv~Q~~~l~~~lT 183 (674)
+.+.+|+|+ ++||+++|+||||||||||+|+|+|+ + +.+|+|.. .++. ...++.+|||+|++
T Consensus 11 g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~-p~~G~I~~--~~~~~~~~~~~~~ig~v~q~~------- 75 (208)
T 3b85_A 11 GQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-A-LQSKQVSR--IILTRPAVEAGEKLGFLPGTL------- 75 (208)
T ss_dssp HHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-H-HHTTSCSE--EEEEECSCCTTCCCCSSCC---------
T ss_pred hHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-C-CcCCeeee--EEecCCchhhhcceEEecCCH-------
Confidence 446799996 89999999999999999999999997 4 46899843 2221 13467899999986
Q ss_pred HHHHH-HHHH----hhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEe
Q 044602 184 VEETL-VFAA----FLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLD 258 (674)
Q Consensus 184 V~e~l-~~~~----~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLD 258 (674)
+||+ .+.. ... .... .++++++++. |+ |||||++|||||+.+|++||||
T Consensus 76 -~enl~~~~~~~~~~~~--~~~~----~~~~~~~l~~-gl------------------Gq~qrv~lAraL~~~p~lllLD 129 (208)
T 3b85_A 76 -NEKIDPYLRPLHDALR--DMVE----PEVIPKLMEA-GI------------------VEVAPLAYMRGRTLNDAFVILD 129 (208)
T ss_dssp -----CTTTHHHHHHHT--TTSC----TTHHHHHHHT-TS------------------EEEEEGGGGTTCCBCSEEEEEC
T ss_pred -HHHHHHHHHHHHHHHH--Hhcc----HHHHHHHHHh-CC------------------chHHHHHHHHHHhcCCCEEEEe
Confidence 4444 2211 011 0000 1234555543 32 9999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q 044602 259 EPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPS 294 (674)
Q Consensus 259 EPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 294 (674)
|||+| ++..+.+.|+++ ++|+||| +|||+.
T Consensus 130 EPts~----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 130 EAQNT----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp SGGGC----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred CCccc----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 99999 899999999988 6689999 999965
No 68
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.92 E-value=1.5e-25 Score=238.30 Aligned_cols=199 Identities=17% Similarity=0.210 Sum_probs=127.9
Q ss_pred eeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC---------------------------------------------
Q 044602 113 KGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT--------------------------------------------- 147 (674)
Q Consensus 113 ~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~--------------------------------------------- 147 (674)
+++++++.+| +++|+||||||||||+++|...+.
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~ 94 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA 94 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence 4678899999 999999999999999999984330
Q ss_pred ----CCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcC------CCCCCH----HHHHHHH
Q 044602 148 ----DDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRL------PGNMNR----QQKYARV 209 (674)
Q Consensus 148 ----~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~------~~~~~~----~~~~~~v 209 (674)
.+.+|++.+||.+... .....+|+.+|+..+++.-++.+++......+. +..... +...+..
T Consensus 95 r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~ 174 (322)
T 1e69_A 95 RELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESF 174 (322)
T ss_dssp EEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHH
T ss_pred EEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 1124688999988752 233456665655444432244444432111000 000000 0001111
Q ss_pred H---------------------HHHHHcCC------CccccccccCCccCccCHHHHHHHHHHHHHh----hCCCEEEEe
Q 044602 210 Q---------------------MILKELGL------ERCRHTRVGGGFIKGISGGERKRTSIGYEIL----VDPSLLLLD 258 (674)
Q Consensus 210 ~---------------------~~l~~lgL------~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~----~~P~illLD 258 (674)
+ +.++. |+ ++..+. .+..||||||||++||++|+ .+|++|+||
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-g~~~~~~~~~~~~~-----~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllD 248 (322)
T 1e69_A 175 NRFISLLFFGGEGRLNIVSEAKSILDA-GFEISIRKPGRRDQ-----KLSLLSGGEKALVGLALLFALMEIKPSPFYVLD 248 (322)
T ss_dssp HHHHHHHHTSCEEEC---------------CCEEECTTSCCC-----BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEE
T ss_pred HHHHHHhcCCceEEEEeeccccccccC-CeEEEEecCccccC-----chhhCCHHHHHHHHHHHHHHHhccCCCCEEEEe
Confidence 1 12221 11 111222 34589999999999999997 588999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEE--EEEeCCE-EEEecChhHH
Q 044602 259 EPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKL--LLISEGY-PVYYGKARES 321 (674)
Q Consensus 259 EPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v--~~L~~G~-iv~~G~~~~~ 321 (674)
|||++||+..+..+.+.|++++ +|+|+|++||++. +.+.||++ ++|.+|+ .+...+.++.
T Consensus 249 Ep~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~--~~~~~d~~~~v~~~~g~s~~~~~~~~~~ 311 (322)
T 1e69_A 249 EVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAADLLHGVTMVNGVSAIVPVEVEKI 311 (322)
T ss_dssp SCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCSEEEEEEESSSCEEEEECCC---
T ss_pred CCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHH--HHhhCceEEEEEEeCCEEEEEEEEcchh
Confidence 9999999999999999999985 4899999999964 57889987 7888775 4455555554
No 69
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.91 E-value=1.2e-25 Score=217.22 Aligned_cols=143 Identities=14% Similarity=0.168 Sum_probs=101.0
Q ss_pred eeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCC--CCCCCHHHHHHHH
Q 044602 114 GITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVL--LPQLTVEETLVFA 191 (674)
Q Consensus 114 ~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l--~~~lTV~e~l~~~ 191 (674)
||||++++||+++|+||||||||||+|++.+ |...+++ +.+ .|+++|++.- +.. ++.+++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~-------~~~~~~~----d~~---~g~~~~~~~~~~~~~-~~~~~~~-- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK-------PTEVISS----DFC---RGLMSDDENDQTVTG-AAFDVLH-- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC-------GGGEEEH----HHH---HHHHCSSTTCGGGHH-HHHHHHH--
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc-------CCeEEcc----HHH---HHHhcCcccchhhHH-HHHHHHH--
Confidence 6899999999999999999999999999653 1111111 112 2567776421 110 1222111
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH----
Q 044602 192 AFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDST---- 267 (674)
Q Consensus 192 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~---- 267 (674)
.... .....|.....+.. ...|||||||++||++++.+|++|+|||||++||+.
T Consensus 64 ---------------~~~~-~~~~~g~~~~~~~~------~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R 121 (171)
T 4gp7_A 64 ---------------YIVS-KRLQLGKLTVVDAT------NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNR 121 (171)
T ss_dssp ---------------HHHH-HHHHTTCCEEEESC------CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTC
T ss_pred ---------------HHHH-HHHhCCCeEEEECC------CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcc
Confidence 1111 12233444333322 247999999999999999999999999999999999
Q ss_pred ------------HHHHHHHHHHHHHhCCcEEEEEecCCch
Q 044602 268 ------------SANKLIQVLQKVAKAGRTVITTIHQPSS 295 (674)
Q Consensus 268 ------------~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 295 (674)
....+.+.|++++++|.|+|++||++..
T Consensus 122 ~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~ 161 (171)
T 4gp7_A 122 TDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEE 161 (171)
T ss_dssp SSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHH
T ss_pred cCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHH
Confidence 5588899999887779999999999753
No 70
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.91 E-value=4.9e-28 Score=254.42 Aligned_cols=157 Identities=16% Similarity=0.234 Sum_probs=126.0
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHH-H
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEE-T 187 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e-~ 187 (674)
+++|+|+|+++++||+++|+||||||||||+++|+|++ +|+| ++|++|++.+|+. |++| |
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~----~G~I--------------~~~v~q~~~lf~~-ti~~~n 173 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL----GGSV--------------LSFANHKSHFWLA-SLADTR 173 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH----TCEE--------------ECGGGTTSGGGGG-GGTTCS
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc----CceE--------------EEEecCccccccc-cHHHHh
Confidence 46899999999999999999999999999999999976 6888 4567888888876 8887 7
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 044602 188 LVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDST 267 (674)
Q Consensus 188 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~ 267 (674)
+.+.. ..+. .+.+.++.+ |++..+ | ..|||||||| ||||+.+|+||| ||+||+.
T Consensus 174 i~~~~------~~~~-----~~~~~i~~~-L~~gld---g----~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~ 227 (305)
T 2v9p_A 174 AALVD------DATH-----ACWRYFDTY-LRNALD---G----YPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQ 227 (305)
T ss_dssp CEEEE------EECH-----HHHHHHHHT-TTGGGG---T----CCEECCCSSC---CCCEECCCCEEE----EESSCST
T ss_pred hccCc------cccH-----HHHHHHHHH-hHccCC---c----cCcCHHHHHH---HHHHhCCCCEEE----ECCCCHH
Confidence 77641 1121 445666664 565555 2 4799999999 999999999999 9999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHHHHHHh
Q 044602 268 SANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFSS 327 (674)
Q Consensus 268 ~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~ 327 (674)
++..+.. .+|+++. .+.+|+| +|++|++++.|+++++..+|..
T Consensus 228 ~~~~i~~--------------ltH~~~~--~~~aD~i-vl~~G~iv~~g~~~el~~~y~~ 270 (305)
T 2v9p_A 228 AEDRYLY--------------LHSRVQT--FRFEQPC-TDESGEQPFNITDADWKSFFVR 270 (305)
T ss_dssp TCGGGGG--------------GTTTEEE--EECCCCC-CCC---CCCCCCHHHHHHHHHH
T ss_pred HHHHHHH--------------HhCCHHH--HHhCCEE-EEeCCEEEEeCCHHHHHHHHHH
Confidence 9988862 1898764 6789999 9999999999999999666654
No 71
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.90 E-value=6.1e-27 Score=255.86 Aligned_cols=170 Identities=14% Similarity=0.154 Sum_probs=135.8
Q ss_pred ccceeeeEEEEeCCe--------------------EEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhcccc
Q 044602 109 KHILKGITGSICPGE--------------------ILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRR 168 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge--------------------~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~ 168 (674)
+.+|+|||+++++|| ++||+||||||||||+|+|+|+.. +.+|+|.++|.+.. +
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~-p~~GsI~~~g~~~t---~-- 109 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN-EEEGAAKTGVVEVT---M-- 109 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT-TSTTSCCCCC-------C--
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC-ccCceEEECCeecc---e--
Confidence 468999999999999 999999999999999999999874 56999999997653 2
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHH--HHHHHHHHH
Q 044602 169 IGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGG--ERKRTSIGY 246 (674)
Q Consensus 169 igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG--erqRv~iA~ 246 (674)
.+|++|++ .++.+|+.||+.++.. ..+++++++.+++.+. +..+ .|||| ||||+.||+
T Consensus 110 ~~~v~q~~-~~~~ltv~D~~g~~~~------------~~~~~~~L~~~~L~~~-~~~~------~lS~G~~~kqrv~la~ 169 (413)
T 1tq4_A 110 ERHPYKHP-NIPNVVFWDLPGIGST------------NFPPDTYLEKMKFYEY-DFFI------IISATRFKKNDIDIAK 169 (413)
T ss_dssp CCEEEECS-SCTTEEEEECCCGGGS------------SCCHHHHHHHTTGGGC-SEEE------EEESSCCCHHHHHHHH
T ss_pred eEEecccc-ccCCeeehHhhcccch------------HHHHHHHHHHcCCCcc-CCeE------EeCCCCccHHHHHHHH
Confidence 27899985 5778899998765421 1246788999998764 2222 39999 999999999
Q ss_pred HHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----hC----CcEEEEEecCCch-HHHhhcCEE
Q 044602 247 EILV----------DPSLLLLDEPTSGLDSTSANKLIQVLQKVA-----KA----GRTVITTIHQPSS-RMFHMFDKL 304 (674)
Q Consensus 247 aL~~----------~P~illLDEPTsgLD~~~~~~i~~~L~~l~-----~~----g~tvi~~~H~~~~-~i~~~~D~v 304 (674)
+|+. +|++++|||||+|||+.++.++++.|+++. +. ..++++++|+... .+.+++|++
T Consensus 170 aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 170 AISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 9999 999999999999999999999999999984 33 2678899998653 245555544
No 72
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.89 E-value=1.2e-24 Score=211.97 Aligned_cols=145 Identities=17% Similarity=0.152 Sum_probs=102.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCC----hhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN----PALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGN 199 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~----~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~ 199 (674)
.++|+||||||||||+|+|+|.+. |.++|.+.. ...++.+||++|+. ++.+++ ++ ...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~~-~~~---- 63 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-FS-SKF---- 63 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-EE-ETT----
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-HH-hhc----
Confidence 589999999999999999999763 445554331 13457899999975 222332 10 000
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHH-----HhhCCCEEEEeC--CCCCCCHHHHHHH
Q 044602 200 MNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYE-----ILVDPSLLLLDE--PTSGLDSTSANKL 272 (674)
Q Consensus 200 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~a-----L~~~P~illLDE--PTsgLD~~~~~~i 272 (674)
.. -.+..+. .+..||||||||++||++ ++.+|++++||| ||++||+.....+
T Consensus 64 ~~----------------~~~~~~~-----~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l 122 (178)
T 1ye8_A 64 FT----------------SKKLVGS-----YGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLV 122 (178)
T ss_dssp CC----------------CSSEETT-----EEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHH
T ss_pred CC----------------ccccccc-----cccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHH
Confidence 00 0012232 345799999999999996 999999999999 9999999999999
Q ss_pred HHHHHHHHhCCcEEEEEec--CCchHHHhhcCEEEEEeCCEEEE
Q 044602 273 IQVLQKVAKAGRTVITTIH--QPSSRMFHMFDKLLLISEGYPVY 314 (674)
Q Consensus 273 ~~~L~~l~~~g~tvi~~~H--~~~~~i~~~~D~v~~L~~G~iv~ 314 (674)
.+.+++ .+.|+|+++| +....+..++|+ .+|++++
T Consensus 123 ~~~l~~---~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 123 RQIMHD---PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHHTC---TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred HHHHhc---CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 988865 4778999987 234567778887 5566665
No 73
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.88 E-value=3.2e-27 Score=235.11 Aligned_cols=181 Identities=17% Similarity=0.151 Sum_probs=120.6
Q ss_pred cccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHH
Q 044602 108 YKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEET 187 (674)
Q Consensus 108 ~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~ 187 (674)
.+.+++| .++++||+++|+||||||||||+|+|+|+++ ...+.+.+.+.+.....++.++|++|++.+|+.+|+.|+
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~-~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~ 84 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP-NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGE 84 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHST-TCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTC
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC-ceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCC
Confidence 3568888 7999999999999999999999999999873 333332222222222235679999999888888888877
Q ss_pred HHHHHhhcC---CCCCCHHHHHHHHHHH------HHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEe
Q 044602 188 LVFAAFLRL---PGNMNRQQKYARVQMI------LKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLD 258 (674)
Q Consensus 188 l~~~~~~~~---~~~~~~~~~~~~v~~~------l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLD 258 (674)
+........ ....++++.++++++. ++.+|+.+..+.. ++.|| +|+.+|++++||
T Consensus 85 l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~lS-----------~l~~~p~~~~LD 148 (207)
T 1znw_A 85 LLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTM-----PEAVT-----------VFLAPPSWQDLQ 148 (207)
T ss_dssp EEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHC-----TTSEE-----------EEEECSCHHHHH
T ss_pred ceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhc-----CCcEE-----------EEEECCCHHHHH
Confidence 642210000 0012344444555554 4455554444433 33566 899999999999
Q ss_pred CCCCCC----CHHHHHHHHHHHHHHHh-CCcEEEEEecCCchHHHhhcCEEEEEe
Q 044602 259 EPTSGL----DSTSANKLIQVLQKVAK-AGRTVITTIHQPSSRMFHMFDKLLLIS 308 (674)
Q Consensus 259 EPTsgL----D~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~ 308 (674)
|||+|+ |+..+.++.+.++++.+ .|.|+|+++||+. ++.++||+|++|.
T Consensus 149 ep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~ 202 (207)
T 1znw_A 149 ARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLVGT 202 (207)
T ss_dssp HHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC--
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHHhc
Confidence 999998 78899999999999975 4899999999975 5889999999985
No 74
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.87 E-value=5.2e-24 Score=224.33 Aligned_cols=173 Identities=14% Similarity=0.131 Sum_probs=134.4
Q ss_pred eeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--------hc--cccEEEEccCCC-CCC
Q 044602 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--------AL--KRRIGFVTQDDV-LLP 180 (674)
Q Consensus 112 L~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--------~~--~~~igyv~Q~~~-l~~ 180 (674)
++++|+++++|++++|+||||||||||++.|+|++.+ .+|+|.++|.+... .+ ++.++|++|++. ++|
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~-~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~ 168 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN-EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 168 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH-cCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCH
Confidence 4678999999999999999999999999999998754 58999999988642 12 347999999988 889
Q ss_pred CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCC--EEEEe
Q 044602 181 QLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPS--LLLLD 258 (674)
Q Consensus 181 ~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~--illLD 258 (674)
.+||+||+.++.... .. ..+++.+|+.+..+..+ .+|| |||++|||+|+.+|+ +|+||
T Consensus 169 ~~~v~e~l~~~~~~~----~d--------~~lldt~gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvLD 228 (302)
T 3b9q_A 169 ATVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVLD 228 (302)
T ss_dssp HHHHHHHHHHHHHTT----CS--------EEEECCCCCSSCCHHHH-----HHHH---HHHHHHHTTSTTCCSEEEEEEE
T ss_pred HHHHHHHHHHHHHcC----Cc--------chHHhcCCCCcchhHHH-----HHHH---HHHHHHHHhhccCCCeeEEEEe
Confidence 899999999864211 00 13456678877666554 4799 999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecCCc--------hHHHhhcCEEEEEeCCEE
Q 044602 259 EPTSGLDSTSANKLIQVLQKVAK-AGRTVITTIHQPS--------SRMFHMFDKLLLISEGYP 312 (674)
Q Consensus 259 EPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~--------~~i~~~~D~v~~L~~G~i 312 (674)
||+|||+.++ ++++.+ .|.|+|++||... +.+....+.|.++..|+.
T Consensus 229 -ptsglD~~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 229 -GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp -GGGGGGGHHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred -CCCCcCHHHH------HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 9999999865 244543 5899999999422 223455678888888864
No 75
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.86 E-value=1.4e-21 Score=229.68 Aligned_cols=109 Identities=22% Similarity=0.384 Sum_probs=96.1
Q ss_pred HHHHHHHHHHcCCCcc-ccccccCCccCccCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 044602 206 YARVQMILKELGLERC-RHTRVGGGFIKGISGGERKRTSIGYEILVDP--SLLLLDEPTSGLDSTSANKLIQVLQKVAKA 282 (674)
Q Consensus 206 ~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P--~illLDEPTsgLD~~~~~~i~~~L~~l~~~ 282 (674)
.++++ .++.+||.+. .++.+ .+|||||||||.||++|..+| ++|+|||||+|||+.....+.+.|++|++.
T Consensus 357 ~~rl~-~L~~vGL~~l~l~r~~-----~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~ 430 (842)
T 2vf7_A 357 VKRLD-VLLHLGLGYLGLDRST-----PTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRG 430 (842)
T ss_dssp HHHHH-HHHHTTCTTSBTTCBG-----GGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTT
T ss_pred HHHHH-HHHhCCCCcCCccCCc-----CcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHc
Confidence 34454 6788999864 56655 489999999999999999999 599999999999999999999999999888
Q ss_pred CcEEEEEecCCchHHHhhcCEEEEE------eCCEEEEecChhHHH
Q 044602 283 GRTVITTIHQPSSRMFHMFDKLLLI------SEGYPVYYGKARESM 322 (674)
Q Consensus 283 g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 322 (674)
|.|||+++|++. +.+.||+|++| ++|++++.|+++++.
T Consensus 431 G~TVIvVeHdl~--~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~ 474 (842)
T 2vf7_A 431 GNSLFVVEHDLD--VIRRADWLVDVGPEAGEKGGEILYSGPPEGLK 474 (842)
T ss_dssp TCEEEEECCCHH--HHTTCSEEEEECSSSGGGCCSEEEEECGGGGG
T ss_pred CCEEEEEcCCHH--HHHhCCEEEEeCCCcccCCCEEEEecCHHHHH
Confidence 999999999974 45789999999 799999999998764
No 76
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.85 E-value=4.7e-24 Score=221.29 Aligned_cols=146 Identities=16% Similarity=0.202 Sum_probs=96.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCH
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNR 202 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~ 202 (674)
.++|+||||||||||+|+|+|... +.+|+|.++|+++.. ..++.++|++|++.+++.+||.||+.|+..... ...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~-~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~--~~~- 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV-SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN--ENC- 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC--TTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC-CCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc--HHH-
Confidence 479999999999999999999874 458999999998754 345789999999999999999999998754321 111
Q ss_pred HHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 044602 203 QQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA 282 (674)
Q Consensus 203 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~ 282 (674)
.+.+.+.++ .+..+... .+||||||||+++||+++. ++++||||.|||+.. .+.++++.+.
T Consensus 80 ---~~~i~~~~~----~~~~~~~~-----~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~ 140 (270)
T 3sop_A 80 ---WEPIEKYIN----EQYEKFLK-----EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKV 140 (270)
T ss_dssp ---SHHHHHHHH----HHHHHHHH-----HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTT
T ss_pred ---HHHHHHHHH----HHHHhhhH-----HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHhc
Confidence 112333332 22233333 3799999999999999876 999999999999987 5566666665
Q ss_pred CcEEEEEecCC
Q 044602 283 GRTVITTIHQP 293 (674)
Q Consensus 283 g~tvi~~~H~~ 293 (674)
+++|+++|..
T Consensus 141 -~~vI~Vi~K~ 150 (270)
T 3sop_A 141 -VNIIPVIAKA 150 (270)
T ss_dssp -SEEEEEETTG
T ss_pred -CcEEEEEecc
Confidence 8999999884
No 77
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.85 E-value=1.1e-23 Score=232.62 Aligned_cols=177 Identities=14% Similarity=0.111 Sum_probs=142.2
Q ss_pred cccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCE---eCCh---------hccccEEEEccC
Q 044602 108 YKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDI---PYNP---------ALKRRIGFVTQD 175 (674)
Q Consensus 108 ~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~---~~~~---------~~~~~igyv~Q~ 175 (674)
...+|+++ +++.+||+++|+||||||||||+++|+|... +..|.|.++|+ ++.+ .+++.++||+|+
T Consensus 144 g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~-~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~ 221 (438)
T 2dpy_A 144 GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR-ADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPA 221 (438)
T ss_dssp SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC-CSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECT
T ss_pred CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC-CCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECC
Confidence 35699999 9999999999999999999999999999874 46899999998 4422 256789999995
Q ss_pred -CCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCE
Q 044602 176 -DVLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSL 254 (674)
Q Consensus 176 -~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~i 254 (674)
+.+++.+||.+|+.+.+..... ..++ .....|. ...+|+|| ||++|| +.+|++
T Consensus 222 ~~~~~~~~~v~~~~~~~ae~~~~-------~~~~---------v~~~ld~------l~~lS~g~-qrvslA---l~~p~~ 275 (438)
T 2dpy_A 222 DVSPLLRMQGAAYATRIAEDFRD-------RGQH---------VLLIMDS------LTRYAMAQ-REIALA---IGEPPA 275 (438)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHT-------TTCE---------EEEEEEC------HHHHHHHH-HHHHHH---TTCCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHh-------CCCC---------HHHHHHh------HHHHHHHH-HHHHHH---hCCCcc
Confidence 5567788999999876532100 0000 0111121 24699999 999999 899998
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHh---C-Cc-----EEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHH
Q 044602 255 LLLDEPTSGLDSTSANKLIQVLQKVAK---A-GR-----TVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 255 llLDEPTsgLD~~~~~~i~~~L~~l~~---~-g~-----tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
|+|||+.+...+.+.++++.+ + |+ ||++++||.+ ...||++++|.+|+++..|+++++
T Consensus 276 ------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 276 ------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp ------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHHSSEEEEECHHHHHT
T ss_pred ------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEEeCcEEEEeCCHHHc
Confidence 999999999999999999876 3 64 9999999987 467999999999999999988765
No 78
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.85 E-value=5e-23 Score=221.17 Aligned_cols=172 Identities=14% Similarity=0.138 Sum_probs=134.8
Q ss_pred eeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--------hc--cccEEEEccCCC-CCCC
Q 044602 113 KGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--------AL--KRRIGFVTQDDV-LLPQ 181 (674)
Q Consensus 113 ~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--------~~--~~~igyv~Q~~~-l~~~ 181 (674)
+.+|+++++|++++|+||||||||||++.|+|++.+ .+|+|.++|.+... .+ +..++|++|++. ++|.
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~-~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~ 226 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN-EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 226 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccc-cCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChh
Confidence 468899999999999999999999999999998754 58999999988742 12 357999999988 8898
Q ss_pred CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCC--EEEEeC
Q 044602 182 LTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPS--LLLLDE 259 (674)
Q Consensus 182 lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~--illLDE 259 (674)
+||+||+.++.... .. ..+++.+|+.+..+..+ .+|| |||++|||+|+.+|+ +|+||
T Consensus 227 ~tv~e~l~~~~~~~----~d--------~~lldt~Gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvLD- 285 (359)
T 2og2_A 227 TVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVLD- 285 (359)
T ss_dssp HHHHHHHHHHHHTT----CS--------EEEEECCCCSSCCHHHH-----HHHH---HHHHHHHHHSTTCCSEEEEEEE-
T ss_pred hhHHHHHHHHHhCC----CH--------HHHHHhcCCChhhhhHH-----HHHH---HHHHHHHHHHhcCCCceEEEEc-
Confidence 99999999864211 00 13456678776666554 4799 999999999999999 99999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecCCc--------hHHHhhcCEEEEEeCCEE
Q 044602 260 PTSGLDSTSANKLIQVLQKVAK-AGRTVITTIHQPS--------SRMFHMFDKLLLISEGYP 312 (674)
Q Consensus 260 PTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~--------~~i~~~~D~v~~L~~G~i 312 (674)
||+|||+.++. +++.+ .|.|+|++||... +......+.|..+..|+.
T Consensus 286 pttglD~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 286 GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp GGGGGGGHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CCCCCCHHHHH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 99999998653 34443 5899999999421 223455678888888863
No 79
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.84 E-value=1.9e-25 Score=224.55 Aligned_cols=171 Identities=14% Similarity=0.127 Sum_probs=110.4
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-----hccccEEEEccCCCCCCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-----ALKRRIGFVTQDDVLLPQLT 183 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-----~~~~~igyv~Q~~~l~~~lT 183 (674)
..-|+||||++++|++++|+||||||||||+|+|+|++ + |+|.+ |.+... ..++.++|++|++.+|+.++
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p---G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 84 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P---NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKL 84 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T---TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C---CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhh
Confidence 34699999999999999999999999999999999976 3 99999 766421 23567999999876665432
Q ss_pred H-HHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHH-----HHHHhhCCCEEE
Q 044602 184 V-EETLVFAAFLRLP-GNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSI-----GYEILVDPSLLL 256 (674)
Q Consensus 184 V-~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~i-----A~aL~~~P~ill 256 (674)
. .+++.+.. .... ...++ +.++++++...+. ..+ ..+|||||||++| +++++.+|++++
T Consensus 85 ~~~~~l~~~~-~~~~~~g~~~----~~i~~~l~~~~~~-il~--------~~lsggq~qR~~i~~~~~~~~ll~~~~~~~ 150 (218)
T 1z6g_A 85 KNEDFLEYDN-YANNFYGTLK----SEYDKAKEQNKIC-LFE--------MNINGVKQLKKSTHIKNALYIFIKPPSTDV 150 (218)
T ss_dssp HTTCEEEEEE-ETTEEEEEEH----HHHHHHHHTTCEE-EEE--------ECHHHHHHHTTCSSCCSCEEEEEECSCHHH
T ss_pred hccchhhhhh-cccccCCCcH----HHHHHHHhCCCcE-EEE--------ecHHHHHHHHHHhcCCCcEEEEEeCcCHHH
Confidence 1 11111100 0000 01111 2456666654321 111 3699999999999 899999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEe
Q 044602 257 LDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLIS 308 (674)
Q Consensus 257 LDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 308 (674)
|||||+++|..+...+.+.|+++.+ ++| ++| + ..||.|++++
T Consensus 151 Lde~~~~~d~~~~~~i~~~l~~~~~-~~~---~~h-~-----~~~d~iiv~~ 192 (218)
T 1z6g_A 151 LLSRLLTRNTENQEQIQKRMEQLNI-ELH---EAN-L-----LNFNLSIIND 192 (218)
T ss_dssp HHHHHHHTCCCCHHHHHHHHHHHHH-HHH---HHT-T-----SCCSEEEECS
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHH-HHH---hhc-c-----cCCCEEEECC
Confidence 9999999999999999999988754 333 344 1 3466666554
No 80
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.84 E-value=6.3e-21 Score=205.07 Aligned_cols=86 Identities=17% Similarity=0.138 Sum_probs=77.0
Q ss_pred CCccC-ccCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHH
Q 044602 228 GGFIK-GISGGERKRTSIGYEIL---------VDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRM 297 (674)
Q Consensus 228 ~~~~~-~LSgGerqRv~iA~aL~---------~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i 297 (674)
+..++ .||||||||++||++|+ .+|+||||||||++||+..+..+++.|+++. .|+|++||. ..
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~~-- 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-AP-- 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-CT--
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-cc--
Confidence 34455 69999999999999999 8999999999999999999999999998863 699999994 32
Q ss_pred HhhcCEEEEEeCCEEEEecChhHH
Q 044602 298 FHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 298 ~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
.+|++++|++|+++..|+++++
T Consensus 333 --~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 --GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp --TCSEEEEEETTEEEECCCTTTS
T ss_pred --cCCEEEEEECCEEEecCCHHHH
Confidence 7999999999999999998875
No 81
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.84 E-value=1.1e-22 Score=216.83 Aligned_cols=131 Identities=21% Similarity=0.250 Sum_probs=107.1
Q ss_pred cceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHH
Q 044602 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEET 187 (674)
Q Consensus 110 ~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e~ 187 (674)
++++++|+.+++|++++|+||||||||||+|+|+|.++ +.+|.|.++|.+... ..++.+++++
T Consensus 159 ~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~-~~~g~i~i~~~~e~~~~~~~~~i~~~~-------------- 223 (330)
T 2pt7_A 159 QAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP-KEERIISIEDTEEIVFKHHKNYTQLFF-------------- 223 (330)
T ss_dssp HHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSC-TTSCEEEEESSCCCCCSSCSSEEEEEC--------------
T ss_pred HHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCc-CCCcEEEECCeeccccccchhEEEEEe--------------
Confidence 37999999999999999999999999999999999874 469999999864211 1233344332
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 044602 188 LVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDST 267 (674)
Q Consensus 188 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~ 267 (674)
+ |||+||++||+||..+|++|++||||+
T Consensus 224 ---------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~----- 251 (330)
T 2pt7_A 224 ---------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS----- 251 (330)
T ss_dssp ---------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS-----
T ss_pred ---------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh-----
Confidence 1 799999999999999999999999998
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCE
Q 044602 268 SANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGY 311 (674)
Q Consensus 268 ~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 311 (674)
.++.+.|+.+...+.|+|+++|+++ ..+.+||+++|.+|+
T Consensus 252 --~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 252 --SEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSSN 291 (330)
T ss_dssp --THHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHTS
T ss_pred --HHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcCC
Confidence 2356777777653458999999986 578899999998875
No 82
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.83 E-value=5e-21 Score=226.73 Aligned_cols=160 Identities=26% Similarity=0.398 Sum_probs=123.5
Q ss_pred HHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCC-CC--H--HHHHHHHHHHHH
Q 044602 140 KIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGN-MN--R--QQKYARVQMILK 214 (674)
Q Consensus 140 ~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~-~~--~--~~~~~~v~~~l~ 214 (674)
.+..+++ .+..|+|.++|+++.+ +..+||.|++.|......... .. . .+..++..+.|+
T Consensus 386 ~C~g~rl-~~~~~~V~i~G~~i~~---------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~ 449 (916)
T 3pih_A 386 VCGGRRL-NREALSVKINGLNIHE---------------FTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLEFLV 449 (916)
T ss_dssp TTCSCCB-CTTGGGEEETTEEHHH---------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHHHHHH
T ss_pred hcccccC-ChHhcCcEECCccHHH---------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHHHHHH
Confidence 3344455 3458999999998743 234688888877544332211 00 0 111233456788
Q ss_pred HcCCCcc-ccccccCCccCccCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEec
Q 044602 215 ELGLERC-RHTRVGGGFIKGISGGERKRTSIGYEILVDPS--LLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIH 291 (674)
Q Consensus 215 ~lgL~~~-~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~--illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H 291 (674)
.+||.+. .++.+ .+|||||||||+|||+|+.+|+ +|+|||||+|||+.....+++.|++++++|.|||+++|
T Consensus 450 ~vgL~~l~l~r~~-----~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtH 524 (916)
T 3pih_A 450 DVGLEYLTLSRSA-----TTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEH 524 (916)
T ss_dssp TTTCTTCBTTSBG-----GGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECC
T ss_pred HcCCccccccCCc-----ccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 8999754 46554 4899999999999999999887 99999999999999999999999999888999999999
Q ss_pred CCchHHHhhcCEEEEE------eCCEEEEecChhHHH
Q 044602 292 QPSSRMFHMFDKLLLI------SEGYPVYYGKARESM 322 (674)
Q Consensus 292 ~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 322 (674)
|+. ....||+|++| ++|++++.|+++++.
T Consensus 525 d~~--~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~ 559 (916)
T 3pih_A 525 DEE--VIRNADHIIDIGPGGGTNGGRVVFQGTVDELL 559 (916)
T ss_dssp CHH--HHHTCSEEEEEESSSGGGCSEEEEEECHHHHH
T ss_pred CHH--HHHhCCEEEEEcCCcccCCCEEEEeechhhhh
Confidence 974 34569999999 899999999999875
No 83
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.83 E-value=1.5e-20 Score=201.18 Aligned_cols=80 Identities=34% Similarity=0.441 Sum_probs=71.1
Q ss_pred ccCccCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCE
Q 044602 230 FIKGISGGERK------RTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDK 303 (674)
Q Consensus 230 ~~~~LSgGerq------Rv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 303 (674)
.+..||||||| |+++|++|+.+|++|+|||||+|||+..+..+.+.|+++.++|.|||++||++ ++...||+
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~~d~ 322 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADH 322 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSE
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHhCCE
Confidence 35689999999 67788888889999999999999999999999999999877789999999995 36789999
Q ss_pred EEEEe--CCE
Q 044602 304 LLLIS--EGY 311 (674)
Q Consensus 304 v~~L~--~G~ 311 (674)
+++|+ +|.
T Consensus 323 ~~~l~~~~g~ 332 (339)
T 3qkt_A 323 VIRISLENGS 332 (339)
T ss_dssp EEEEEEETTE
T ss_pred EEEEEecCCc
Confidence 99986 454
No 84
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.83 E-value=7.2e-22 Score=206.97 Aligned_cols=184 Identities=11% Similarity=0.107 Sum_probs=123.6
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCcc-EEEECCEeCCh-hccccEEEEccCCCCCCCCCHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKG-NITYNDIPYNP-ALKRRIGFVTQDDVLLPQLTVEE 186 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G-~I~~~g~~~~~-~~~~~igyv~Q~~~l~~~lTV~e 186 (674)
..+|+++++.+++|++++|+||||||||||++.|+|...+ .+| .|.+.+.+... .+++++..+.|+.. +++.+
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~-~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~~~ 96 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGT-AMGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQSD 96 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHH-TSCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGGCH
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHH-HcCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhhcc
Confidence 4589999999999999999999999999999999997643 357 67655444432 33344444444322 13334
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHH-HHHHHHHHHHhhCCCEEEEeCCCC---
Q 044602 187 TLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGE-RKRTSIGYEILVDPSLLLLDEPTS--- 262 (674)
Q Consensus 187 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe-rqRv~iA~aL~~~P~illLDEPTs--- 262 (674)
++..+. .+.++..+.++++++..++. ..+ .+..+|.+| +||+. |+++..+|+++++||||+
T Consensus 97 ~l~~~~-------~~~~~~~~~~~~~l~~~~l~-i~~------~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~ 161 (296)
T 1cr0_A 97 SLKREI-------IENGKFDQWFDELFGNDTFH-LYD------SFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVS 161 (296)
T ss_dssp HHHHHH-------HHHTHHHHHHHHHHSSSCEE-EEC------CCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC----
T ss_pred ccccCC-------CCHHHHHHHHHHHhccCCEE-EEC------CCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCC
Confidence 444321 11222333445554433321 111 113588998 66776 999999999999999999
Q ss_pred C---CCH-HHHHHHHHHHHHHHhC-CcEEEEEecCCc-h--------------------HHHhhcCEEEEEeCCEE
Q 044602 263 G---LDS-TSANKLIQVLQKVAKA-GRTVITTIHQPS-S--------------------RMFHMFDKLLLISEGYP 312 (674)
Q Consensus 263 g---LD~-~~~~~i~~~L~~l~~~-g~tvi~~~H~~~-~--------------------~i~~~~D~v~~L~~G~i 312 (674)
+ +|. .....+.+.|++++++ |+|||+++|+.. . .+.+.||+|++|++|+.
T Consensus 162 ~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 162 ASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp -------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 5 555 6678899999999865 999999999951 2 57789999999998874
No 85
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.82 E-value=4.2e-22 Score=203.33 Aligned_cols=181 Identities=10% Similarity=0.066 Sum_probs=113.6
Q ss_pred ccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHH
Q 044602 107 DYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEE 186 (674)
Q Consensus 107 ~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e 186 (674)
+.+.+|+|+||++++|+++||+||||||||||+++|+|++ |.+.++ ..++.++|++|++ +++.+|+.|
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-----G~~~~~------~~~~~i~~v~~d~-~~~~l~~~~ 77 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-----GQNEVE------QRQRKVVILSQDR-FYKVLTAEQ 77 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH-----TGGGSC------GGGCSEEEEEGGG-GBCCCCHHH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-----chhccc------ccCCceEEEeCCc-CccccCHhH
Confidence 3467999999999999999999999999999999999865 334333 3567899999995 677899999
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 044602 187 TLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDS 266 (674)
Q Consensus 187 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~ 266 (674)
++.+........ .......+.+.+.++.+ .+..+..+ ..+|+||+||+++ ++++.+|+++++|||....|.
T Consensus 78 ~~~~~~~~~~~~-~~~~~~~~~~~~~L~~l--~~~~~~~~-----~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~ 148 (245)
T 2jeo_A 78 KAKALKGQYNFD-HPDAFDNDLMHRTLKNI--VEGKTVEV-----PTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQ 148 (245)
T ss_dssp HHHHHTTCCCTT-SGGGBCHHHHHHHHHHH--HTTCCEEE-----CCEETTTTEECSS-CEEECCCSEEEEECTTTTTSH
T ss_pred hhhhhccCCCCC-CcccccHHHHHHHHHHH--HCCCCeec-----ccccccccCccCc-eEEecCCCEEEEeCccccccH
Confidence 988754321110 01111123344555543 33444443 4799999999988 588889999999999888876
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHHHHHH
Q 044602 267 TSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFS 326 (674)
Q Consensus 267 ~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~ 326 (674)
. +.++ .+.+|++++|+.......+++++ ++|+ +.+++.+.+.
T Consensus 149 ~--------l~~~--~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~~~~ 190 (245)
T 2jeo_A 149 E--------IRDM--FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILTQYT 190 (245)
T ss_dssp H--------HHTT--CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHHHHH
T ss_pred H--------HHHh--cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHHHHH
Confidence 4 2222 37899999998433223344444 6664 5677765443
No 86
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.82 E-value=5.3e-24 Score=225.29 Aligned_cols=128 Identities=13% Similarity=0.095 Sum_probs=100.5
Q ss_pred eeEEE-EeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHH
Q 044602 114 GITGS-ICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAA 192 (674)
Q Consensus 114 ~vs~~-i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~ 192 (674)
|+|.. +++|+++||+||||||||||+++|+|++.+ ..|. +.+++|+|++.+++. |++||+.+..
T Consensus 81 ~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~-~~G~-------------~~v~~v~qd~~~~~~-t~~e~~~~~~ 145 (312)
T 3aez_A 81 PQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLAR-WDHH-------------PRVDLVTTDGFLYPN-AELQRRNLMH 145 (312)
T ss_dssp CCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHT-STTC-------------CCEEEEEGGGGBCCH-HHHHHTTCTT
T ss_pred cccccCCCCCEEEEEECCCCchHHHHHHHHHhhccc-cCCC-------------CeEEEEecCccCCcc-cHHHHHHHHH
Confidence 34443 799999999999999999999999998744 3342 569999999999998 9999986532
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 044602 193 FLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDS 266 (674)
Q Consensus 193 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~ 266 (674)
. .+.+.....+.+.+.++.++ .+..+..+ ..|||||+||+++|++++.+|+|||+|||++.+|+
T Consensus 146 ~----~g~~~~~d~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 146 R----KGFPESYNRRALMRFVTSVK-SGSDYACA-----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp C----TTSGGGBCHHHHHHHHHHHH-TTCSCEEE-----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred h----cCCChHHHHHHHHHHHHHhC-CCcccCCc-----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 1 11222233456778888887 44444444 37999999999999999999999999999999986
No 87
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.81 E-value=4e-20 Score=208.81 Aligned_cols=77 Identities=18% Similarity=0.336 Sum_probs=71.0
Q ss_pred cCcc-CHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEE
Q 044602 231 IKGI-SGGERKRTSIGYEILVDP--SLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLI 307 (674)
Q Consensus 231 ~~~L-SgGerqRv~iA~aL~~~P--~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L 307 (674)
+..| ||||||||+||++|+.+| ++|||||||+|||+.++..+.+.|+++++ |+|||++||++. +...||++++|
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~~ 470 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYKV 470 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEEE
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEE
Confidence 4567 999999999999999999 99999999999999999999999999987 999999999975 45679999999
Q ss_pred eCC
Q 044602 308 SEG 310 (674)
Q Consensus 308 ~~G 310 (674)
++|
T Consensus 471 ~~~ 473 (517)
T 4ad8_A 471 EKQ 473 (517)
T ss_dssp ECC
T ss_pred ecc
Confidence 665
No 88
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.81 E-value=6.3e-20 Score=216.05 Aligned_cols=136 Identities=29% Similarity=0.432 Sum_probs=111.2
Q ss_pred CCCCCHHHHHHHHHhhcCCCC---CCH---HHHHHHHHHHHHHcCCCcc-ccccccCCccCccCHHHHHHHHHHHHHhhC
Q 044602 179 LPQLTVEETLVFAAFLRLPGN---MNR---QQKYARVQMILKELGLERC-RHTRVGGGFIKGISGGERKRTSIGYEILVD 251 (674)
Q Consensus 179 ~~~lTV~e~l~~~~~~~~~~~---~~~---~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~iA~aL~~~ 251 (674)
+..+||.|++.|...+.++.. +.+ ++..+++ +.|+.+||... .++.++ +|||||||||.||++|..+
T Consensus 449 ~~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~-----tLSGGEkQRV~LA~aL~~~ 522 (972)
T 2r6f_A 449 VTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSR 522 (972)
T ss_dssp HHTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGG-----GCCHHHHHHHHHHHHHTTC
T ss_pred HhhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccc-----cCCHHHHHHHHHHHHHhhC
Confidence 345799999999766543220 000 2334455 45889999864 566654 8999999999999999998
Q ss_pred C--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEE------eCCEEEEecChhHHH
Q 044602 252 P--SLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLI------SEGYPVYYGKARESM 322 (674)
Q Consensus 252 P--~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 322 (674)
| ++|+|||||+|||+.....+++.|++|++.|.|||+++|++. . .+.||+|++| ++|++++.|+++++.
T Consensus 523 ~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~-~-i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 523 LTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED-T-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp CCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHH-H-HHSCSEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred CCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-H-HHhCCEEEEeCCCccCCCCEEEEecCHHHHH
Confidence 5 999999999999999999999999999888999999999974 3 5679999999 799999999998764
No 89
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.79 E-value=1.6e-22 Score=228.96 Aligned_cols=169 Identities=15% Similarity=0.114 Sum_probs=120.0
Q ss_pred cccceeeeEE-EEeCCeEEEEEcCCCCcHHHHHHH--HHcCCCCCCccEEEECCEeCCh---hccccEEEEccCCCCCCC
Q 044602 108 YKHILKGITG-SICPGEILALMGPSGSGKTTLLKI--VGGRLTDDVKGNITYNDIPYNP---ALKRRIGFVTQDDVLLPQ 181 (674)
Q Consensus 108 ~~~iL~~vs~-~i~~Ge~~ailG~sGsGKSTLl~~--L~G~~~~~~~G~I~~~g~~~~~---~~~~~igyv~Q~~~l~~~ 181 (674)
..++|+|+|+ .+++||+++|+||||||||||+++ ++|..+ +.+|.|+++|++... ..++.+||++|++...+
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~-~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~- 101 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE-FDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEG- 101 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTT-
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh-CCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccC-
Confidence 3679999999 999999999999999999999999 688764 348999999988532 23467899999754211
Q ss_pred CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 044602 182 LTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPT 261 (674)
Q Consensus 182 lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPT 261 (674)
|+.+ ..... . +...++++.++|.+..+..+ +.|||| +|+++++||||
T Consensus 102 -----~l~~---~~~~~--~-----~~~~~~l~~~~l~~~~~~~~-----~~LS~g-------------~~~~lilDe~t 148 (525)
T 1tf7_A 102 -----KLFI---LDASP--D-----PEGQEVVGGFDLSALIERIN-----YAIQKY-------------RARRVSIDSVT 148 (525)
T ss_dssp -----SEEE---EECCC--C-----SSCCSCCSSHHHHHHHHHHH-----HHHHHH-------------TCSEEEEECST
T ss_pred -----cEEE---EecCc--c-----cchhhhhcccCHHHHHHHHH-----HHHHHc-------------CCCEEEECCHH
Confidence 1110 00000 0 00111222233333222222 245655 58899999999
Q ss_pred C-----CCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchH--------HHhhcCEEEEEeCCE
Q 044602 262 S-----GLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSR--------MFHMFDKLLLISEGY 311 (674)
Q Consensus 262 s-----gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~--------i~~~~D~v~~L~~G~ 311 (674)
+ +||+..+..+.+.++++++.|+|||+++|++... ...+||+|++|++|+
T Consensus 149 ~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~ 211 (525)
T 1tf7_A 149 SVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVL 211 (525)
T ss_dssp TTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEEC
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEc
Confidence 8 4699999999999999988899999999998652 345699999999843
No 90
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.79 E-value=1.3e-19 Score=205.12 Aligned_cols=156 Identities=15% Similarity=0.117 Sum_probs=119.3
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhc
Q 044602 116 TGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLR 195 (674)
Q Consensus 116 s~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~ 195 (674)
++.+++|++++|+||||||||||++.++|...+ +|+ +.+.+++|++. .++.++.. +
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~--~G~-------------~vi~~~~ee~~----~~l~~~~~-----~ 330 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA--NKE-------------RAILFAYEESR----AQLLRNAY-----S 330 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT--TTC-------------CEEEEESSSCH----HHHHHHHH-----T
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh--CCC-------------CEEEEEEeCCH----HHHHHHHH-----H
Confidence 459999999999999999999999999997633 343 12456667641 12333321 1
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH-----HHH
Q 044602 196 LPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDST-----SAN 270 (674)
Q Consensus 196 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~-----~~~ 270 (674)
. +.+. ++ +...|+.+..+.. +..|||||+||+.+|+++..+|++|++| ||++||.. .+.
T Consensus 331 ~--g~~~-------~~-~~~~g~~~~~~~~-----p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~ 394 (525)
T 1tf7_A 331 W--GMDF-------EE-MERQNLLKIVCAY-----PESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQ 394 (525)
T ss_dssp T--SCCH-------HH-HHHTTSEEECCCC-----GGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHH
T ss_pred c--CCCH-------HH-HHhCCCEEEEEec-----cccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHH
Confidence 1 1121 12 2345555555443 4589999999999999999999999999 99999999 999
Q ss_pred HHHHHHHHHHhCCcEEEEEecCCc---------hHHHhhcCEEEEEeCCE
Q 044602 271 KLIQVLQKVAKAGRTVITTIHQPS---------SRMFHMFDKLLLISEGY 311 (674)
Q Consensus 271 ~i~~~L~~l~~~g~tvi~~~H~~~---------~~i~~~~D~v~~L~~G~ 311 (674)
.+.++++.+++.|.|+|+++|+.. ..+..+||+|++|++|+
T Consensus 395 ~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 395 FVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 999999999888999999999971 34667899999999886
No 91
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.78 E-value=1.9e-20 Score=225.08 Aligned_cols=159 Identities=18% Similarity=0.142 Sum_probs=115.2
Q ss_pred ccceeeeEEEEeC-------CeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEE-EEccCCCCCC
Q 044602 109 KHILKGITGSICP-------GEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIG-FVTQDDVLLP 180 (674)
Q Consensus 109 ~~iL~~vs~~i~~-------Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~ig-yv~Q~~~l~~ 180 (674)
+.|++|+++.+++ |++++|+||||||||||||++ |+... ..++| ||||+..
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~-----------------~aqiG~~Vpq~~~--- 827 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV-----------------MAQMGCYVPAEVC--- 827 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-----------------HHTTTCCEESSEE---
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-----------------HhheeEEeccCcC---
Confidence 5699999999987 999999999999999999999 87621 23456 9999863
Q ss_pred CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 044602 181 QLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEP 260 (674)
Q Consensus 181 ~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEP 260 (674)
.+||.|++.. .+|+.+.... +...+|+++++ +++|++++++|+++|||||
T Consensus 828 ~l~v~d~I~~------------------------rig~~d~~~~-----~~stf~~em~~-~a~al~la~~~sLlLLDEp 877 (1022)
T 2o8b_B 828 RLTPIDRVFT------------------------RLGASDRIMS-----GESTFFVELSE-TASILMHATAHSLVLVDEL 877 (1022)
T ss_dssp EECCCSBEEE------------------------ECC--------------CHHHHHHHH-HHHHHHHCCTTCEEEEECT
T ss_pred CCCHHHHHHH------------------------HcCCHHHHhh-----chhhhHHHHHH-HHHHHHhCCCCcEEEEECC
Confidence 4566555421 1222221111 12357777665 9999999999999999999
Q ss_pred CCCCCHHHH-HHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEE--EecChhH
Q 044602 261 TSGLDSTSA-NKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPV--YYGKARE 320 (674)
Q Consensus 261 TsgLD~~~~-~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv--~~G~~~~ 320 (674)
|+|+|+... ..+++.|+.++++ |.++|++||+.. .+...+|++.++ +|++. +.|++++
T Consensus 878 ~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e-l~~~~~d~~~v~-~g~~~~~~~~~~~~ 939 (1022)
T 2o8b_B 878 GRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS-LVEDYSQNVAVR-LGHMACMVENECED 939 (1022)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH-HHHHTSSCSSEE-EEEEEEC-------
T ss_pred CCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH-HHHHhCCcceee-cCeEEEEEecCccc
Confidence 999999985 5578899999876 999999999964 466779998887 48887 5565543
No 92
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.78 E-value=5.1e-19 Score=209.05 Aligned_cols=134 Identities=25% Similarity=0.363 Sum_probs=110.8
Q ss_pred CCCCCCHHHHHHHHHhhcCCCCCCH----------HHHHHHHHHHHHHcCCCcc-ccccccCCccCccCHHHHHHHHHHH
Q 044602 178 LLPQLTVEETLVFAAFLRLPGNMNR----------QQKYARVQMILKELGLERC-RHTRVGGGFIKGISGGERKRTSIGY 246 (674)
Q Consensus 178 l~~~lTV~e~l~~~~~~~~~~~~~~----------~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~iA~ 246 (674)
-+..+||.|++.|...+. ++. ++..+++ +.|+.+||... .++.++ +|||||||||.||+
T Consensus 465 q~~~ltV~e~l~f~enl~----l~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~~l~l~r~~~-----tLSGGEkQRV~LA~ 534 (993)
T 2ygr_A 465 EVCELSIADCADFLNALT----LGPREQAIAGQVLKEIRSRL-GFLLDVGLEYLSLSRAAA-----TLSGGEAQRIRLAT 534 (993)
T ss_dssp CSSHHHHHHHHHTTTTTT----SCHHHHHHHHHHHHHHHHHH-HHHHHHTGGGSCTTCBGG-----GCCHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHhcC----CCHHHhHHHHHHHHHHHHHH-HHHhhCCCCccccCCCcc-----cCCHHHHHHHHHHH
Confidence 355689999999854443 233 2333444 45788999754 566554 89999999999999
Q ss_pred HHhhC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEE------eCCEEEEecCh
Q 044602 247 EILVD--PSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLI------SEGYPVYYGKA 318 (674)
Q Consensus 247 aL~~~--P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~ 318 (674)
+|..+ |++|+|||||+|||+.....+.+.|++|++.|.|||+++|++. . .+.||+|++| ++|++++.|++
T Consensus 535 aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~-~-i~~ADrIi~Lgp~aG~~gG~iv~~G~~ 612 (993)
T 2ygr_A 535 QIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDED-T-IEHADWIVDIGPGAGEHGGRIVHSGPY 612 (993)
T ss_dssp HHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-H-HHTCSEEEEECSSSGGGCCSCCEEECH
T ss_pred HHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHH-H-HHhCCEEEEecCccccCCCEEEEeeCH
Confidence 99999 5899999999999999999999999999989999999999974 3 5689999999 79999999999
Q ss_pred hHHHH
Q 044602 319 RESME 323 (674)
Q Consensus 319 ~~~~~ 323 (674)
+++.+
T Consensus 613 ~e~~~ 617 (993)
T 2ygr_A 613 DELLR 617 (993)
T ss_dssp HHHHH
T ss_pred HHhhh
Confidence 98754
No 93
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.77 E-value=1.2e-20 Score=202.15 Aligned_cols=177 Identities=16% Similarity=0.188 Sum_probs=129.6
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-----------hccccEEEEccCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-----------ALKRRIGFVTQDDV 177 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-----------~~~~~igyv~Q~~~ 177 (674)
..+|+++ +.+.+||+++|+||||||||||+++|+|... +..|.|.+.|++..+ .+++.+.+++|.+.
T Consensus 59 ~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~-~~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~~ 136 (347)
T 2obl_A 59 VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS-ADIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSDR 136 (347)
T ss_dssp CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC-CSEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTTS
T ss_pred CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC-CCEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCCC
Confidence 5699999 9999999999999999999999999999874 458999999875211 13456888887542
Q ss_pred CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEE
Q 044602 178 LLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLL 257 (674)
Q Consensus 178 l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illL 257 (674)
+..+.+.-.. ....+.+.....+ .+... .+ ..+..+|+|| ||+++| +.+|++
T Consensus 137 -----~~~~r~~~~~------------~~~~~ae~~~~~~-~~vl~-~l--d~~~~lS~g~-r~v~la---l~~p~~--- 188 (347)
T 2obl_A 137 -----PALERMKAAF------------TATTIAEYFRDQG-KNVLL-MM--DSVTRYARAA-RDVGLA---SGEPDV--- 188 (347)
T ss_dssp -----CHHHHHHHHH------------HHHHHHHHHHTTT-CEEEE-EE--ETHHHHHHHH-HHHHHH---TTCCCC---
T ss_pred -----CHHHHHHHHH------------HHHHHHHHHHhcc-ccHHH-HH--hhHHHHHHHH-HHHHHH---cCCCCc---
Confidence 3333322110 0001111111111 11100 00 1234799999 899999 688887
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh--CCc-----EEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHH
Q 044602 258 DEPTSGLDSTSANKLIQVLQKVAK--AGR-----TVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 258 DEPTsgLD~~~~~~i~~~L~~l~~--~g~-----tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
|+|||+.....+.+.++++.+ .|. ||++++||.+ ..+||++++|.+|+++..|+.++.
T Consensus 189 ---t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 189 ---RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp ---BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred ---ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEeeCcEEEEeCCHHHc
Confidence 999999999999999999874 477 9999999987 467999999999999999988765
No 94
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.77 E-value=2.5e-20 Score=188.96 Aligned_cols=162 Identities=14% Similarity=0.084 Sum_probs=106.4
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHH--cCCCCCCccEEEECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHH
Q 044602 117 GSICPGEILALMGPSGSGKTTLLKIVG--GRLTDDVKGNITYNDIPYNP---ALKRRIGFVTQDDVLLPQLTVEETLVFA 191 (674)
Q Consensus 117 ~~i~~Ge~~ailG~sGsGKSTLl~~L~--G~~~~~~~G~I~~~g~~~~~---~~~~~igyv~Q~~~l~~~lTV~e~l~~~ 191 (674)
+.+++||+++|+||||||||||+++|+ |...+ .+|.+.+++..... ...+.+|+++|+....+.+++.++....
T Consensus 25 Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 103 (251)
T 2ehv_A 25 GGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEY-GEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSV 103 (251)
T ss_dssp TSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHH-CCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-----
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccc
Confidence 379999999999999999999999999 64223 36777777765432 2234577777765444545554433221
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC-----H
Q 044602 192 AFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLD-----S 266 (674)
Q Consensus 192 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD-----~ 266 (674)
... . ....... ....+.++.++...+..-..+|+++++||||++|| +
T Consensus 104 ~~~------~----~~~~~~~------------------~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~ 155 (251)
T 2ehv_A 104 VGL------P----SEEKFVL------------------EDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEER 155 (251)
T ss_dssp ------------------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGG
T ss_pred ccc------c----cccceec------------------cCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHH
Confidence 100 0 0000000 01233455554444444568999999999999997 6
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCchHH---------Hhhc-CEEEEEe
Q 044602 267 TSANKLIQVLQKVAKAGRTVITTIHQPSSRM---------FHMF-DKLLLIS 308 (674)
Q Consensus 267 ~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i---------~~~~-D~v~~L~ 308 (674)
..+..+.+.++.+++.|+|||+++|+... + ..+| |+|++|+
T Consensus 156 ~~~~~l~~l~~~l~~~g~tii~vtH~~~~-~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 156 KIREVLLKLNTILLEMGVTTILTTEAPDP-QHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp GHHHHHHHHHHHHHHHCCEEEEEECCC-----CCSSSSSCGGGGCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEECCCCC-CcccccccChhhEeeeEEEEEe
Confidence 77777999999998789999999999764 3 5788 9999996
No 95
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.77 E-value=1.8e-19 Score=214.23 Aligned_cols=152 Identities=16% Similarity=0.202 Sum_probs=112.3
Q ss_pred cccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHH--------cCCCCCCccEEEECCEeCChhccccEEEEccCCCCC
Q 044602 108 YKHILKGITGSICPGEILALMGPSGSGKTTLLKIVG--------GRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLL 179 (674)
Q Consensus 108 ~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~--------G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~ 179 (674)
.+.|++|+|+++++|++++|+||||||||||||+++ |...|. ++. .++.+ +
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa-~~~--------------~~~~~---d--- 706 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPC-ESA--------------EVSIV---D--- 706 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSE-EEE--------------EEECC---S---
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccc-ccc--------------cchHH---H---
Confidence 356899999999999999999999999999999993 422111 110 01110 0
Q ss_pred CCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHH--hhCCCEEEE
Q 044602 180 PQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEI--LVDPSLLLL 257 (674)
Q Consensus 180 ~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL--~~~P~illL 257 (674)
+++..+|+.+.. .+++|+|++++..+|+++ +.+|+++||
T Consensus 707 -------------------------------~i~~~ig~~d~l--------~~~lStf~~e~~~~a~il~~a~~~sLlLL 747 (934)
T 3thx_A 707 -------------------------------CILARVGAGDSQ--------LKGVSTFMAEMLETASILRSATKDSLIII 747 (934)
T ss_dssp -------------------------------EEEEECC-----------------CHHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred -------------------------------HHHHhcCchhhH--------HHhHhhhHHHHHHHHHHHHhccCCcEEEE
Confidence 011112222111 136888888888888888 999999999
Q ss_pred eCCCCCCCHHHHHHH-HHHHHHHHh-CCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHH
Q 044602 258 DEPTSGLDSTSANKL-IQVLQKVAK-AGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARES 321 (674)
Q Consensus 258 DEPTsgLD~~~~~~i-~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 321 (674)
||||+|||+.....+ ...++.+++ .|.|+|++||+. ++..++|++..+.+|++...++.+++
T Consensus 748 DEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 748 DELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp ESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTEEEEEEEEEEETTEE
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccceeEeeEEEEEecCCcE
Confidence 999999999999888 667788876 499999999995 36789999999999999998887765
No 96
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.77 E-value=6.7e-20 Score=189.08 Aligned_cols=133 Identities=19% Similarity=0.305 Sum_probs=100.0
Q ss_pred cceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHH
Q 044602 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLV 189 (674)
Q Consensus 110 ~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~ 189 (674)
++|+|+| +++|++++|+||||||||||+++|+|.+.+..+|+|.++|.++....+..+++++|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~-------------- 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQR-------------- 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEE--------------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHH--------------
Confidence 5899999 999999999999999999999999997743228999999877532111112222221
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 044602 190 FAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSA 269 (674)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~ 269 (674)
.+|+.. ..+ |++||++|..+|+++++|||| |+.+.
T Consensus 79 -------------------------~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~~~~ 113 (261)
T 2eyu_A 79 -------------------------EVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLETV 113 (261)
T ss_dssp -------------------------EBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SHHHH
T ss_pred -------------------------HhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHH
Confidence 123221 123 899999999999999999999 98886
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeC
Q 044602 270 NKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISE 309 (674)
Q Consensus 270 ~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 309 (674)
..++ +. ++.|.+|++++|+.+ ....+||++.|..
T Consensus 114 ~~~l---~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 114 ETAL---RA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHH---HH-HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHH---HH-HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 6544 33 356999999999975 4678999988864
No 97
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.75 E-value=2e-18 Score=162.75 Aligned_cols=82 Identities=30% Similarity=0.397 Sum_probs=73.2
Q ss_pred CccCccCHHHHHHHHHH------HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcC
Q 044602 229 GFIKGISGGERKRTSIG------YEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFD 302 (674)
Q Consensus 229 ~~~~~LSgGerqRv~iA------~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 302 (674)
..+.+||||||||++|| |+|+.+|++++|||||+|||+.++..+.+.|+++.++|+|||++||++ ++.+.||
T Consensus 53 ~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~d 130 (148)
T 1f2t_B 53 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAAD 130 (148)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCS
T ss_pred CChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhCC
Confidence 34668999999999876 899999999999999999999999999999999877799999999997 3578999
Q ss_pred EEEEE--eCCEE
Q 044602 303 KLLLI--SEGYP 312 (674)
Q Consensus 303 ~v~~L--~~G~i 312 (674)
++++| ++|..
T Consensus 131 ~ii~l~~~~g~s 142 (148)
T 1f2t_B 131 HVIRISLENGSS 142 (148)
T ss_dssp EEEEEEEETTEE
T ss_pred EEEEEEcCCCeE
Confidence 99999 46643
No 98
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.74 E-value=1.8e-19 Score=180.37 Aligned_cols=152 Identities=20% Similarity=0.182 Sum_probs=98.4
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC-C-----CccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHH
Q 044602 117 GSICPGEILALMGPSGSGKTTLLKIVGGRLTD-D-----VKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVF 190 (674)
Q Consensus 117 ~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~-~-----~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~ 190 (674)
+-+++||+++|+||||||||||+++|+|...+ + ..|.|++++.+... .+.+++++|+..+++. |+.||+.+
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~--~~~i~~~~~~~~~~~~-~~~~~~~~ 96 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR--PERIREIAQNRGLDPD-EVLKHIYV 96 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC--HHHHHHHHHHTTSCHH-HHHHTEEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC--HHHHHHHHHHcCCCHH-HHhhcEEE
Confidence 47999999999999999999999999995432 2 23467776654210 1234445554444433 44444322
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHH-HHHHHHHHHHhh-------CCCEEEEeCCCC
Q 044602 191 AAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGE-RKRTSIGYEILV-------DPSLLLLDEPTS 262 (674)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe-rqRv~iA~aL~~-------~P~illLDEPTs 262 (674)
. ...++++ ++++..+++++. +|+++++||||+
T Consensus 97 ~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 136 (231)
T 4a74_A 97 A----------------------------------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 136 (231)
T ss_dssp E----------------------------------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSH
T ss_pred E----------------------------------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHH
Confidence 1 1123332 333455555555 999999999999
Q ss_pred CCCHHH------------HHHHHHHHHHHHhC-CcEEEEEecCCch---HHHhhcCEEEEEeCCE
Q 044602 263 GLDSTS------------ANKLIQVLQKVAKA-GRTVITTIHQPSS---RMFHMFDKLLLISEGY 311 (674)
Q Consensus 263 gLD~~~------------~~~i~~~L~~l~~~-g~tvi~~~H~~~~---~i~~~~D~v~~L~~G~ 311 (674)
++|+.. ...+++.|++++++ |.|||+++|.... .+...+|++++|++|+
T Consensus 137 ~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 137 HFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred HhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 999842 23678888887654 9999999995331 3677899999998753
No 99
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.73 E-value=4.5e-21 Score=190.41 Aligned_cols=146 Identities=18% Similarity=0.198 Sum_probs=114.5
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCC--CCCCHHHHHHHHHhhcC
Q 044602 119 ICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLL--PQLTVEETLVFAAFLRL 196 (674)
Q Consensus 119 i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~--~~lTV~e~l~~~~~~~~ 196 (674)
.++|++++|+||||||||||+++|+|++.+ .++|++|++.++ +.+|+.+++.+.. ..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~-------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~--~~ 61 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE-------------------RVALLPMDHYYKDLGHLPLEERLRVNY--DH 61 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG-------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT--TS
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC-------------------CeEEEecCccccCcccccHHHhcCCCC--CC
Confidence 578999999999999999999999997621 589999998876 5679999876532 11
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHH----HHHHHHHHHHhhCCCEEEEeCCCCC-------CC
Q 044602 197 PGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGE----RKRTSIGYEILVDPSLLLLDEPTSG-------LD 265 (674)
Q Consensus 197 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe----rqRv~iA~aL~~~P~illLDEPTsg-------LD 265 (674)
+ .....+++.+.++.+++.+..+.++ ..+|+|| +||+++|++++.+|+++++||||++ ||
T Consensus 62 ~----~~~~~~~~~~~l~~~~~~~~~~~~~-----~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld 132 (211)
T 3asz_A 62 P----DAFDLALYLEHAQALLRGLPVEMPV-----YDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVD 132 (211)
T ss_dssp G----GGBCHHHHHHHHHHHHTTCCEEECC-----EETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEE
T ss_pred h----hhhhHHHHHHHHHHHHcCCCcCCCc-----ccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEe
Confidence 1 1112345667788888776655543 3789996 4788999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHH-HhCCcEEEEEecCCc
Q 044602 266 STSANKLIQVLQKV-AKAGRTVITTIHQPS 294 (674)
Q Consensus 266 ~~~~~~i~~~L~~l-~~~g~tvi~~~H~~~ 294 (674)
+.....+.+.+++. .++|+|++.++|+..
T Consensus 133 ~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 133 ADADERFIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp CCHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999875 456999999999843
No 100
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.71 E-value=2.9e-18 Score=203.47 Aligned_cols=155 Identities=14% Similarity=0.135 Sum_probs=104.4
Q ss_pred cccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHH
Q 044602 108 YKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEET 187 (674)
Q Consensus 108 ~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~ 187 (674)
.+.|++|+|+++++|++++|+||||||||||||++++.......|. .+.. -...++++ +.++..+.+.+
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~------~vpa-~~~~i~~~---d~i~~~ig~~d- 727 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGS------YVPA-EEATIGIV---DGIFTRMGAAD- 727 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTC------CBSS-SEEEEECC---SEEEEEC-----
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCc------cccc-hhhhhhHH---HHHHHhCChHH-
Confidence 4679999999999999999999999999999999986421111111 0000 00111211 11222222211
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 044602 188 LVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDST 267 (674)
Q Consensus 188 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~ 267 (674)
..... ...+|+|++|++.|+++ +.+|+++||||||+|||+.
T Consensus 728 ---------------------------------~l~~~-----~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~ 768 (918)
T 3thx_B 728 ---------------------------------NIYKG-----RSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTH 768 (918)
T ss_dssp --------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHH
T ss_pred ---------------------------------HHHHh-----HHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHH
Confidence 11111 23799999999999998 8999999999999999999
Q ss_pred HHHHHH-HHHHHHHh-CCcEEEEEecCCchHHHhhcCEEEE-EeCCEEEE
Q 044602 268 SANKLI-QVLQKVAK-AGRTVITTIHQPSSRMFHMFDKLLL-ISEGYPVY 314 (674)
Q Consensus 268 ~~~~i~-~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~-L~~G~iv~ 314 (674)
....+. ..++.+++ .|.|+|++||++. +.+++|+.-- +.++++.+
T Consensus 769 ~~~~i~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~~~~~v~n~~~~~ 816 (918)
T 3thx_B 769 DGIAIAYATLEYFIRDVKSLTLFVTHYPP--VCELEKNYSHQVGNYHMGF 816 (918)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHTTTTEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhhcccceEEEEEEE
Confidence 999997 77788865 5999999999964 4566765431 34444443
No 101
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.71 E-value=1.3e-18 Score=203.40 Aligned_cols=145 Identities=18% Similarity=0.212 Sum_probs=107.0
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETL 188 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l 188 (674)
+.+++|+|++ |++++|+||||||||||||+|+|....+..|.+. + ..+..+++++| +++.+++.||+
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v----p---a~~~~i~~v~~---i~~~~~~~d~l 632 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV----P---AEEAHLPLFDG---IYTRIGASDDL 632 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB----S---SSEEEECCCSE---EEEECCC----
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee----e---hhccceeeHHH---hhccCCHHHHH
Confidence 5689999999 9999999999999999999999965323356542 1 12345788776 55666666654
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHH--hhCCCEEEEeCC---CCC
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEI--LVDPSLLLLDEP---TSG 263 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL--~~~P~illLDEP---Tsg 263 (674)
. .++|+|+++++.+|+++ +.+|+++||||| |++
T Consensus 633 ~------------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~ 670 (765)
T 1ewq_A 633 A------------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSS 670 (765)
T ss_dssp --------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCH
T ss_pred H------------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCC
Confidence 2 14789999999999999 999999999999 999
Q ss_pred CCHHHH-HHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEe
Q 044602 264 LDSTSA-NKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYY 315 (674)
Q Consensus 264 LD~~~~-~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 315 (674)
||..+. ..+++.|++ .|.|+|++||+.. ...++ .-.+.++++...
T Consensus 671 lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~--l~~~~--~~~v~n~~~~~~ 716 (765)
T 1ewq_A 671 LDGVAIATAVAEALHE---RRAYTLFATHYFE--LTALG--LPRLKNLHVAAR 716 (765)
T ss_dssp HHHHHHHHHHHHHHHH---HTCEEEEECCCHH--HHTCC--CTTEEEEEEEEE
T ss_pred cCHHHHHHHHHHHHHh---CCCEEEEEeCCHH--HHHhh--hhcceEEEEEEE
Confidence 999875 578888766 4899999999953 34554 222344555444
No 102
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.71 E-value=5.6e-19 Score=186.05 Aligned_cols=148 Identities=14% Similarity=0.148 Sum_probs=108.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--------hc--cccEEEEccCCCCCCCCCHHHHHHH
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--------AL--KRRIGFVTQDDVLLPQLTVEETLVF 190 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--------~~--~~~igyv~Q~~~l~~~lTV~e~l~~ 190 (674)
+|++++|+||||||||||++.|+|++.+ .+|+|.++|.+... .+ ++.++||+|++.++|.+||+||+.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~-~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~ 179 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN-LGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA 179 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT-TTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh-cCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence 7999999999999999999999998754 58999999998632 11 3569999999999998999999987
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 044602 191 AAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSAN 270 (674)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~ 270 (674)
+..... -..+++..|+.+..+. -++..++||++|||+++.+|+.++| .||+.+..
T Consensus 180 ~~~~~~------------d~~llDt~G~~~~~~~--------~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~ 234 (304)
T 1rj9_A 180 MKARGY------------DLLFVDTAGRLHTKHN--------LMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQ 234 (304)
T ss_dssp HHHHTC------------SEEEECCCCCCTTCHH--------HHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCT
T ss_pred HHhCCC------------CEEEecCCCCCCchHH--------HHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHH
Confidence 532110 0012222333322221 2455669999999999999995444 45555556
Q ss_pred HHHHHHHHHHhC-CcEEEEEecCCc
Q 044602 271 KLIQVLQKVAKA-GRTVITTIHQPS 294 (674)
Q Consensus 271 ~i~~~L~~l~~~-g~tvi~~~H~~~ 294 (674)
.+++.++++.+. |.|+|++||+..
T Consensus 235 ~~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 235 NGLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred HHHHHHHHHHHHcCCcEEEEECCcc
Confidence 677777777654 899999999853
No 103
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.71 E-value=4e-20 Score=212.42 Aligned_cols=166 Identities=14% Similarity=0.196 Sum_probs=113.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCC-------hhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCC
Q 044602 125 LALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN-------PALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLP 197 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~-------~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~ 197 (674)
+||+|||||||||||++|+|+..|..+|.|.++|.++. ..+++.+||++|++.+++.+||+||+.++......
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~ 127 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAG 127 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHC
T ss_pred EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999875546999999998852 24677899999999999999999999876321100
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCC------CCCCCHHHHHH
Q 044602 198 GNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEP------TSGLDSTSANK 271 (674)
Q Consensus 198 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEP------TsgLD~~~~~~ 271 (674)
. .-++. + +++.++.+...+|+++++||| |+|||+..+..
T Consensus 128 ~----------------~~~~s---~----------------~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~ 172 (608)
T 3szr_A 128 E----------------GMGIS---H----------------ELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYK 172 (608)
T ss_dssp S----------------SSCCC---S----------------CCEEEEEEESSSCCEEEEECCC------CCSSCSHHHH
T ss_pred C----------------ccccc---h----------------HHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHH
Confidence 0 00111 0 111222223458999999999 99999999999
Q ss_pred HHHHHHHHHhC--CcEEEEEecCCch------HHHhhc-----CEEEEEeCCEEEEecChhHHHHHH
Q 044602 272 LIQVLQKVAKA--GRTVITTIHQPSS------RMFHMF-----DKLLLISEGYPVYYGKARESMEYF 325 (674)
Q Consensus 272 i~~~L~~l~~~--g~tvi~~~H~~~~------~i~~~~-----D~v~~L~~G~iv~~G~~~~~~~~f 325 (674)
+.+.++++.++ +.++++++|+... .+.+.. ..|.++.++.++..|+.+++.+..
T Consensus 173 i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~~l 239 (608)
T 3szr_A 173 IKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVDVV 239 (608)
T ss_dssp HHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTCCCCCC
T ss_pred HHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcCcccHHHHHHHH
Confidence 99999997543 6788899998651 222222 468999999998888876655443
No 104
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.70 E-value=8.2e-20 Score=192.35 Aligned_cols=158 Identities=15% Similarity=0.087 Sum_probs=87.2
Q ss_pred ccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChh-ccccEEEEccCCCCCCCCCHH
Q 044602 107 DYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPA-LKRRIGFVTQDDVLLPQLTVE 185 (674)
Q Consensus 107 ~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~-~~~~igyv~Q~~~l~~~lTV~ 185 (674)
+.+.++++++++| +|+||||+|||||++.|.|....+.+| |.++|.++... -.+.+++++|++.+...+||.
T Consensus 9 ~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~ 81 (301)
T 2qnr_A 9 HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLTVV 81 (301)
T ss_dssp ---------CEEE------EEEEETTSSHHHHHHHHHC-------------------------CEEEEC---CCEEEEEE
T ss_pred CCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCCCcccCcchh
Confidence 4467999999998 999999999999999999962244578 88888776432 235689999998888889999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CC
Q 044602 186 ETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTS-GL 264 (674)
Q Consensus 186 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTs-gL 264 (674)
|+..++.... ..+.....++.+. +..+.. .+++|||||||+.+||+++ ++++||||+ ||
T Consensus 82 Dt~g~~~~~~-----~~e~~~~l~~~l~------~~~~~~-----~~~~sgg~rqrv~~ara~~----ll~ldePt~~~L 141 (301)
T 2qnr_A 82 DTPGYGDAIN-----CRDCFKTIISYID------EQFERY-----LHDESGLNRRHIIDNRVHC----CFYFISPFGHGL 141 (301)
T ss_dssp EEC----------------CTTHHHHHH------HHHHHH-----HHHHTSSCCTTCCCCCCCE----EEEEECSSSSSC
T ss_pred hhhhhhhhcC-----cHHHHHHHHHHHH------HHHHHH-----HHHhCHHhhhhhhhhhhhh----eeeeecCcccCC
Confidence 9887764321 0000011112211 122333 3589999999999988875 999999998 59
Q ss_pred CHHHHHHHHHHHHHHHhC-CcEEEEEecCCch
Q 044602 265 DSTSANKLIQVLQKVAKA-GRTVITTIHQPSS 295 (674)
Q Consensus 265 D~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~ 295 (674)
|+... +.++++.++ +.++|++.||..+
T Consensus 142 d~~~~----~~l~~l~~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 142 KPLDV----AFMKAIHNKVNIVPVIAKADTLT 169 (301)
T ss_dssp CHHHH----HHHHHHTTTSCEEEEECCGGGSC
T ss_pred CHHHH----HHHHHHHhcCCEEEEEEeCCCCC
Confidence 99873 556666543 7899999999653
No 105
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.70 E-value=8e-20 Score=179.53 Aligned_cols=156 Identities=19% Similarity=0.181 Sum_probs=106.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCC
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGN 199 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~ 199 (674)
||+++|+||||||||||+++|+|.+. .+| |.++|.+..+ .+++++||++|+. ... ++++. .+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~--~~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~---~~~l~---~~~---- 65 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK--SSG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGT---RGPLS---RVG---- 65 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH--HTT-CCCEEEECCEEETTSSEEEEEEEET--TSC---EEEEE---ECC----
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc--cCC-EEEcCEecchhHhhhceEEEEEEec--ccc---eehhh---ccc----
Confidence 78999999999999999999999874 589 9999987753 4577899999975 111 11110 110
Q ss_pred CCHHHHHHHHHHHHHHcCCCc-cccccccCCccCccCHHHHHHH-HHHH---HHhhCCCEEEEeC--CCCCCCHHHHHHH
Q 044602 200 MNRQQKYARVQMILKELGLER-CRHTRVGGGFIKGISGGERKRT-SIGY---EILVDPSLLLLDE--PTSGLDSTSANKL 272 (674)
Q Consensus 200 ~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv-~iA~---aL~~~P~illLDE--PTsgLD~~~~~~i 272 (674)
++.++ ..+..+|. +...+|+|||+++ ++++ |+..+|++||+|| ||..+|......+
T Consensus 66 ----------------~~~~~~~~~~~v~~-~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l 128 (189)
T 2i3b_A 66 ----------------LEPPPGKRECRVGQ-YVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAV 128 (189)
T ss_dssp ----------------CCCCSSSCCEESSS-SEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHH
T ss_pred ----------------ccCCccccccccce-EEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHH
Confidence 01111 11123442 2346999999998 4454 5799999999999 8999998765555
Q ss_pred HHHHHHHHhCCcEEEE----EecCCchHHHhhcCEEEEEeCCEEEEec
Q 044602 273 IQVLQKVAKAGRTVIT----TIHQPSSRMFHMFDKLLLISEGYPVYYG 316 (674)
Q Consensus 273 ~~~L~~l~~~g~tvi~----~~H~~~~~i~~~~D~v~~L~~G~iv~~G 316 (674)
.+.+ +...++|+ ++|+.+ ..+.|+|..+.+|+++.-.
T Consensus 129 ~~~l----~~~~~~ilgti~vsh~~~---~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 129 RQTL----STPGTIILGTIPVPKGKP---LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp HHHH----HCSSCCEEEECCCCCSSC---CTTHHHHHTTCCSEEEECC
T ss_pred HHHH----hCCCcEEEEEeecCCCCc---hHHHHHHeecCCcEEEEeC
Confidence 4444 44555553 238853 3456777777888887654
No 106
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.68 E-value=8.7e-19 Score=188.23 Aligned_cols=165 Identities=21% Similarity=0.147 Sum_probs=106.8
Q ss_pred ceeee-EEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC-CCCc----cE-EEECCEeCChhccccEEEEccCCCCCCCCC
Q 044602 111 ILKGI-TGSICPGEILALMGPSGSGKTTLLKIVGGRLT-DDVK----GN-ITYNDIPYNPALKRRIGFVTQDDVLLPQLT 183 (674)
Q Consensus 111 iL~~v-s~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~-~~~~----G~-I~~~g~~~~~~~~~~igyv~Q~~~l~~~lT 183 (674)
.|+++ ++.+++|++++|+||||||||||++.+++... ++.+ |+ |++++.+.. .++++++++|+..+++. +
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~--~~~~i~~i~q~~~~~~~-~ 195 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--RPERIREIAQNRGLDPD-E 195 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC--CHHHHHHHHHTTTCCHH-H
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC--CHHHHHHHHHHcCCCHH-H
Confidence 46665 68999999999999999999999999999762 2234 67 888887642 13456677776655443 5
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHh-------hCCCEEE
Q 044602 184 VEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEIL-------VDPSLLL 256 (674)
Q Consensus 184 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~-------~~P~ill 256 (674)
+.||+.+... .-|.+|+|++.++++++ .+|++++
T Consensus 196 v~~ni~~~~~---------------------------------------~~~~~~~~~l~~~~~~~~~lS~G~~~~~llI 236 (349)
T 1pzn_A 196 VLKHIYVARA---------------------------------------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLI 236 (349)
T ss_dssp HGGGEEEEEC---------------------------------------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEE
T ss_pred HhhCEEEEec---------------------------------------CChHHHHHHHHHHHHHHHHhccccCCCCEEE
Confidence 5554433210 01345666666666666 6899999
Q ss_pred EeCCCCCCCHHH------------HHHHHHHHHHHHh-CCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecCh
Q 044602 257 LDEPTSGLDSTS------------ANKLIQVLQKVAK-AGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKA 318 (674)
Q Consensus 257 LDEPTsgLD~~~------------~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 318 (674)
+||||+++|+.. ..++++.|+++++ .|+|||+++|... .....++.......|+++.++..
T Consensus 237 lDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~~G~~l~~~~~ 310 (349)
T 1pzn_A 237 VDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPIGGHILAHSAT 310 (349)
T ss_dssp EETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----------------CCCCCTTCS
T ss_pred EeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccCCcceEeecCc
Confidence 999999999862 3566677777765 4899999999864 33334455566667776655543
No 107
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.68 E-value=6.9e-18 Score=198.41 Aligned_cols=157 Identities=15% Similarity=0.102 Sum_probs=110.7
Q ss_pred cccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHH
Q 044602 108 YKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEET 187 (674)
Q Consensus 108 ~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~ 187 (674)
.+.+++|+|++ ++|++++|+||||||||||||+|+|.......| ..+.. .+..++++.| +++.+++.|+
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G------~~vpa-~~~~i~~~~~---i~~~~~~~d~ 662 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIG------SYVPA-QKVEIGPIDR---IFTRVGAADD 662 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTT------CCBSS-SEEEECCCCE---EEEEEC----
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcC------cccch-hcccceeHHH---HHhhCCHHHH
Confidence 35689999999 999999999999999999999999864211122 11111 1234666655 5555666665
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 044602 188 LVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDST 267 (674)
Q Consensus 188 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~ 267 (674)
+..+ ...+|+++++ ++.+...+.+|+++||||||+|+|+.
T Consensus 663 l~~~---------------------------------------~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~ 702 (800)
T 1wb9_A 663 LASG---------------------------------------RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTY 702 (800)
T ss_dssp ----------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSS
T ss_pred HHhh---------------------------------------hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChh
Confidence 5321 0135666654 55555679999999999999999998
Q ss_pred HHHHH-HHHHHHHHh-CCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecC
Q 044602 268 SANKL-IQVLQKVAK-AGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGK 317 (674)
Q Consensus 268 ~~~~i-~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 317 (674)
....+ .+.++.+.+ .|.++|++||+.. +..++|++..+.+|++.....
T Consensus 703 d~~~i~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~~~~v~n~~~~~~~~ 752 (800)
T 1wb9_A 703 DGLSLAWACAENLANKIKALTLFATHYFE--LTQLPEKMEGVANVHLDALEH 752 (800)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHSTTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEeCCHH--HHHHhhhhhceEEEEEEEEEc
Confidence 87776 778888887 4999999999974 467899888888888776543
No 108
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.67 E-value=1.1e-17 Score=179.67 Aligned_cols=133 Identities=23% Similarity=0.325 Sum_probs=94.1
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHH
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVF 190 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~ 190 (674)
+|+++ ...+|++++|+|||||||||||++|+|.+.+..+|.|...+.++....+...+++.|.......
T Consensus 114 ~l~~l--~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~--------- 182 (356)
T 3jvv_A 114 VFKRV--SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDT--------- 182 (356)
T ss_dssp HHHHH--HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTB---------
T ss_pred HHHHH--HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeecccc---------
Confidence 55555 5789999999999999999999999998744335777655444432233334455554321111
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 044602 191 AAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSAN 270 (674)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~ 270 (674)
++-.+ +||++|..+|++|++|||| |.++..
T Consensus 183 -------------------------------------------~~~~~----~La~aL~~~PdvillDEp~---d~e~~~ 212 (356)
T 3jvv_A 183 -------------------------------------------LGFSE----ALRSALREDPDIILVGEMR---DLETIR 212 (356)
T ss_dssp -------------------------------------------SCHHH----HHHHHTTSCCSEEEESCCC---SHHHHH
T ss_pred -------------------------------------------CCHHH----HHHHHhhhCcCEEecCCCC---CHHHHH
Confidence 11111 9999999999999999999 665544
Q ss_pred HHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCC
Q 044602 271 KLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEG 310 (674)
Q Consensus 271 ~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 310 (674)
.+.++++.|.||++++|+.+. ...+||++.|..|
T Consensus 213 ----~~~~~~~~G~~vl~t~H~~~~--~~~~dRli~l~~~ 246 (356)
T 3jvv_A 213 ----LALTAAETGHLVFGTLHTTSA--AKTIDRVVDVFPA 246 (356)
T ss_dssp ----HHHHHHHTTCEEEEEESCSSH--HHHHHHHHHTSCH
T ss_pred ----HHHHHHhcCCEEEEEEccChH--HHHHHHHhhhcCc
Confidence 444456679999999999874 4789999998654
No 109
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.66 E-value=1.1e-17 Score=167.20 Aligned_cols=168 Identities=15% Similarity=0.129 Sum_probs=111.3
Q ss_pred ccceeeeEE-EEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh-hccc---cEEEEccCCCCCCCCC
Q 044602 109 KHILKGITG-SICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP-ALKR---RIGFVTQDDVLLPQLT 183 (674)
Q Consensus 109 ~~iL~~vs~-~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~-~~~~---~igyv~Q~~~l~~~lT 183 (674)
.+.|+++.+ .+++|++++|+||||||||||++.|++... +..|.|.+.+.+... .+++ .+++.+|+.... .++
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 86 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL-RDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-KLI 86 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH-HHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-TEE
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH-HCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-CEE
Confidence 446888885 899999999999999999999999998653 235667665543321 1111 122222210000 000
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCC--EEEEeCCC
Q 044602 184 VEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPS--LLLLDEPT 261 (674)
Q Consensus 184 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~--illLDEPT 261 (674)
+.+ ... +.++ . ..+ ....|.+|.++...+.....+|+ ++++||||
T Consensus 87 ~~~------------~~~------------~~~~-~----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 133 (235)
T 2w0m_A 87 IID------------ALM------------KEKE-D----QWS----LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVS 133 (235)
T ss_dssp EEE------------CCC-----------------C----TTB----CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGG
T ss_pred EEe------------ccc------------cccC-c----eee----ecCCCHHHHHHHHHHHHHhhCCCceEEEEECch
Confidence 000 000 0000 0 000 12459999999888888888999 99999999
Q ss_pred CCC--CHHHHHHHHHHHHHHHh-CCcEEEEEecCCc-------hHHHhhcCEEEEEeCCE
Q 044602 262 SGL--DSTSANKLIQVLQKVAK-AGRTVITTIHQPS-------SRMFHMFDKLLLISEGY 311 (674)
Q Consensus 262 sgL--D~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~-------~~i~~~~D~v~~L~~G~ 311 (674)
+++ |+.....+++.|+++++ .|.|||+++|+.. ..+.+.||+|++|++.+
T Consensus 134 ~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 134 ALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp GGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred HhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 888 99999999999999875 5999999999972 34788999999998653
No 110
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.65 E-value=3.8e-16 Score=162.17 Aligned_cols=151 Identities=15% Similarity=0.196 Sum_probs=105.9
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCC
Q 044602 118 SICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLP 197 (674)
Q Consensus 118 ~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~ 197 (674)
.+++|++++|+||||||||||++.+++... .|++. .|.+... ...+.|+..++.. ..+.+.+. ...
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~---~g~~~-~g~~~~~--~~~v~~~~~e~~~---~~~~~r~~---~~g-- 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA---GGPDL-LEVGELP--TGPVIYLPAEDPP---TAIHHRLH---ALG-- 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH---TCCCT-TCCCCCC--CCCEEEEESSSCH---HHHHHHHH---HHH--
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh---cCCCc-CCCccCC--CccEEEEECCCCH---HHHHHHHH---HHH--
Confidence 589999999999999999999999998542 46653 3544321 3468888766532 01222221 111
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC--CCCHHHH---HHH
Q 044602 198 GNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTS--GLDSTSA---NKL 272 (674)
Q Consensus 198 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTs--gLD~~~~---~~i 272 (674)
..... ...+++++.+++.+..+.. +..||+||+|++ ++++.+|+++++||||+ ++|.... ..+
T Consensus 92 ~~~~~----~~~~~~~~~l~l~~~~~~~-----~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~ 159 (279)
T 1nlf_A 92 AHLSA----EERQAVADGLLIQPLIGSL-----PNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQV 159 (279)
T ss_dssp TTSCH----HHHHHHHHHEEECCCTTSC-----CCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHH
T ss_pred hhcCh----hhhhhccCceEEeecCCCC-----cccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHH
Confidence 11122 2356677888877665544 357999998876 68889999999999999 9998554 788
Q ss_pred HHHHHHHHh-CCcEEEEEecCCc
Q 044602 273 IQVLQKVAK-AGRTVITTIHQPS 294 (674)
Q Consensus 273 ~~~L~~l~~-~g~tvi~~~H~~~ 294 (674)
++.|+++++ .|+|||+++|+..
T Consensus 160 ~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 160 IGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHHHHHHCCEEEEEEEC--
T ss_pred HHHHHHHHHHcCCEEEEEecCCC
Confidence 889998874 5999999999964
No 111
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.64 E-value=2.4e-18 Score=169.72 Aligned_cols=163 Identities=14% Similarity=0.072 Sum_probs=94.4
Q ss_pred cceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC----CCCccEEEECCEeCChhccccEEEEccCCCC----CCC
Q 044602 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT----DDVKGNITYNDIPYNPALKRRIGFVTQDDVL----LPQ 181 (674)
Q Consensus 110 ~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~----~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l----~~~ 181 (674)
.+|++ +.+++|+.++|+|+||||||||+|.|+|... .+..|.+.+.+.-. +...+-++ +.+.+ .+.
T Consensus 16 ~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~---~~~~~~l~-Dt~G~~~~~~~~ 89 (210)
T 1pui_A 16 PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFE---VADGKRLV-DLPGYGYAEVPE 89 (210)
T ss_dssp SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEE---EETTEEEE-ECCCCC------
T ss_pred CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEE---ecCCEEEE-ECcCCcccccCH
Confidence 36777 8899999999999999999999999998651 23456654422100 00011111 11110 000
Q ss_pred CC---HHHHHHHHHhh-c----------CCCCCCHHHHHHHHHHHHHHcCCCccc-cccccCCccCccCHHHHHH-HHHH
Q 044602 182 LT---VEETLVFAAFL-R----------LPGNMNRQQKYARVQMILKELGLERCR-HTRVGGGFIKGISGGERKR-TSIG 245 (674)
Q Consensus 182 lT---V~e~l~~~~~~-~----------~~~~~~~~~~~~~v~~~l~~lgL~~~~-~~~vg~~~~~~LSgGerqR-v~iA 245 (674)
-. .+..+...... + .....+. ..+.+.+.++..+++... .++ ...+|+||||| +..+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~v~nK-----~D~~s~~~~~~~~~~~ 162 (210)
T 1pui_A 90 EMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKD--LDQQMIEWAVDSNIAVLVLLTK-----ADKLASGARKAQLNMV 162 (210)
T ss_dssp CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCH--HHHHHHHHHHHTTCCEEEEEEC-----GGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCch--hHHHHHHHHHHcCCCeEEEEec-----ccCCCchhHHHHHHHH
Confidence 00 11112111110 0 0001111 223455666667765431 222 23699999999 8999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcE
Q 044602 246 YEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRT 285 (674)
Q Consensus 246 ~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~t 285 (674)
++++.+|+++++|||||++|.....++.+.|.++.++|.|
T Consensus 163 ~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 163 REAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp HHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred HHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999999998766644
No 112
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.61 E-value=1.7e-17 Score=166.60 Aligned_cols=152 Identities=15% Similarity=0.181 Sum_probs=104.0
Q ss_pred eeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC-CCccEEEECCEeCChhccccEEEEccCCCCCCCCCH----HHHH
Q 044602 114 GITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD-DVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTV----EETL 188 (674)
Q Consensus 114 ~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~-~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV----~e~l 188 (674)
.-.-..++|++++|+||||||||||+|+|+|..++ ..+|.|.+++.+.....++.++|++|++..|+.+++ .|++
T Consensus 8 ~~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~ 87 (219)
T 1s96_A 8 HHHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHA 87 (219)
T ss_dssp -------CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEE
T ss_pred cccccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHH
Confidence 33456799999999999999999999999998754 468999999877654445679999997655544333 1221
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTS 268 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~ 268 (674)
.+. |+ ..+.| +++ +.+++..++++||| ||+.+
T Consensus 88 ~~~-----------------------------------~~--~yg~~---~~~---v~~~l~~G~illLD-----LD~~~ 119 (219)
T 1s96_A 88 EVF-----------------------------------GN--YYGTS---REA---IEQVLATGVDVFLD-----IDWQG 119 (219)
T ss_dssp EET-----------------------------------TE--EEEEE---HHH---HHHHHTTTCEEEEE-----CCHHH
T ss_pred HHH-----------------------------------hc--cCCCC---HHH---HHHHHhcCCeEEEE-----ECHHH
Confidence 110 00 00122 222 34566678999999 99999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHHHHHHh
Q 044602 269 ANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFSS 327 (674)
Q Consensus 269 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~ 327 (674)
+..+.+.+. +++||++++|++.. +.+ |+ +.+| .++++++..-+..
T Consensus 120 ~~~i~~~l~----~~~tI~i~th~~~~-l~~---Rl--~~rG----~~~~e~i~~rl~~ 164 (219)
T 1s96_A 120 AQQIRQKMP----HARSIFILPPSKIE-LDR---RL--RGRG----QDSEEVIAKRMAQ 164 (219)
T ss_dssp HHHHHHHCT----TCEEEEEECSSHHH-HHH---HH--HTTS----CSCHHHHHHHHHH
T ss_pred HHHHHHHcc----CCEEEEEECCCHHH-HHH---HH--HHcC----CCCHHHHHHHHHH
Confidence 999999876 58999999999753 333 43 6778 6788888765543
No 113
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.57 E-value=1.2e-16 Score=174.97 Aligned_cols=150 Identities=14% Similarity=0.145 Sum_probs=91.0
Q ss_pred cccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC-CCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHH
Q 044602 108 YKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD-DVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEE 186 (674)
Q Consensus 108 ~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~-~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e 186 (674)
.+.+++|+||+| +|+||||||||||+|+|+|...+ +..|.+.+++.+ ....+.+++++|++.+++.+||.|
T Consensus 23 ~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~--t~~~~~i~~v~q~~~~~~~Ltv~D 94 (418)
T 2qag_C 23 RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKK--TVQVEQSKVLIKEGGVQLLLTIVD 94 (418)
T ss_dssp TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-------CCEEEEEECC------CEEEEEEE
T ss_pred CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcc--ceeeeeEEEEEecCCcccceeeee
Confidence 467999999998 99999999999999999997642 212222222111 112356899999988888899999
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCC---EEEEeCCC-C
Q 044602 187 TLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPS---LLLLDEPT-S 262 (674)
Q Consensus 187 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~---illLDEPT-s 262 (674)
|+.++.... .......+.+.++ ..++.+++||++|||+++.+|+ +|++|||| .
T Consensus 95 t~g~~~~~~------~~~~~~~i~~~i~-----------------~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~ 151 (418)
T 2qag_C 95 TPGFGDAVD------NSNCWQPVIDYID-----------------SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGH 151 (418)
T ss_dssp CC-----------------CHHHHHHHH-----------------HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CC
T ss_pred chhhhhhcc------chhhHHHHHHHHH-----------------HHHHHHHHHHHHHHHHhccCCCeeEEEEEecCccc
Confidence 988764321 1111111211121 1366678889999999999999 99999999 6
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEecCC
Q 044602 263 GLDSTSANKLIQVLQKVAKAGRTVITTIHQP 293 (674)
Q Consensus 263 gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 293 (674)
|||+... +.++++.. +.++|+++|..
T Consensus 152 ~L~~~d~----~~lk~L~~-~v~iIlVinK~ 177 (418)
T 2qag_C 152 GLKPLDI----EFMKRLHE-KVNIIPLIAKA 177 (418)
T ss_dssp SCCHHHH----HHHHHHTT-TSEEEEEEEST
T ss_pred CCCHHHH----HHHHHHhc-cCcEEEEEEcc
Confidence 9998873 44555544 78888888874
No 114
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.57 E-value=6.1e-15 Score=142.54 Aligned_cols=90 Identities=22% Similarity=0.394 Sum_probs=73.1
Q ss_pred cCccCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEE
Q 044602 231 IKGISGGERKRTSIGYEILV----DPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLL 306 (674)
Q Consensus 231 ~~~LSgGerqRv~iA~aL~~----~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~ 306 (674)
+..||||||||++||++|+. +|++++|||||+|||+.+...+.+.|+++.+ +.++|++||+. .+...||+++.
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~--~~~~~ad~i~~ 138 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRD--VMMANADKIIG 138 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH--HHHTTCSEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecH--HHHHhCCEEEE
Confidence 45799999999999999974 4699999999999999999999999999865 57899999995 35789999986
Q ss_pred Ee--CCEE-EEecChhHHHH
Q 044602 307 IS--EGYP-VYYGKARESME 323 (674)
Q Consensus 307 L~--~G~i-v~~G~~~~~~~ 323 (674)
+. +|.. +...+.++..+
T Consensus 139 v~~~~g~s~~~~~~~~~~~~ 158 (173)
T 3kta_B 139 VSMRDGVSKVVSLSLEKAMK 158 (173)
T ss_dssp EEEETTEEEEEECCHHHHHH
T ss_pred EEecCCEEEEEEEEcHHHHH
Confidence 64 6643 33444444443
No 115
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.56 E-value=2.7e-19 Score=174.64 Aligned_cols=170 Identities=12% Similarity=0.041 Sum_probs=112.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCC
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMN 201 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~ 201 (674)
|++++|+||||||||||+++|++. .+|.+.++|.++... ...++++|.....+.+|+++++.+.+...
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~----~~g~~~i~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------ 69 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ----LDNSAYIEGDIINHM--VVGGYRPPWESDELLALTWKNITDLTVNF------ 69 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH----SSSEEEEEHHHHHTT--CCTTCCCGGGCHHHHHHHHHHHHHHHHHH------
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc----cCCeEEEcccchhhh--hccccccCccchhHHHHHHHHHHHHHHHH------
Confidence 789999999999999999999972 368999998764321 23567777654445567888877653211
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccC---CccCcc--CHHHHHHHHHHH------HHhhCCCEEEEeCCCCCCCHHHHH
Q 044602 202 RQQKYARVQMILKELGLERCRHTRVGG---GFIKGI--SGGERKRTSIGY------EILVDPSLLLLDEPTSGLDSTSAN 270 (674)
Q Consensus 202 ~~~~~~~v~~~l~~lgL~~~~~~~vg~---~~~~~L--SgGerqRv~iA~------aL~~~P~illLDEPTsgLD~~~~~ 270 (674)
+. -+-....+...+. ...+.+ |+|++|++.++. +++.+|+...+|+ +||+....
T Consensus 70 -----------~~-~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~ 134 (189)
T 2bdt_A 70 -----------LL-AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLE 134 (189)
T ss_dssp -----------HH-TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGH
T ss_pred -----------Hh-cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHH
Confidence 00 0000011110000 001234 888888888888 9999999888884 89998888
Q ss_pred HHHHHHHHHHhCCcEEEEEecC-CchHHHhhcCEEEEEeCCEEEEecChhHHH
Q 044602 271 KLIQVLQKVAKAGRTVITTIHQ-PSSRMFHMFDKLLLISEGYPVYYGKARESM 322 (674)
Q Consensus 271 ~i~~~L~~l~~~g~tvi~~~H~-~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 322 (674)
. .+.++.+.+.+.++|.++|+ ++ ++.+.||+|+ ++|+++..|+++-+.
T Consensus 135 ~-~~~~~~~~~~~~~ii~tsh~~~~-~~e~~~~~i~--~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 135 L-VEEFESKGIDERYFYNTSHLQPT-NLNDIVKNLK--TNPRFIFCMAGDPLE 183 (189)
T ss_dssp H-HHHHHHTTCCTTSEEECSSSCGG-GHHHHHHHHH--HCGGGSCC-------
T ss_pred H-HHHHhhcCCCccEEEeCCCCChh-hHHHHHHHHh--hCCcEEEeecCCchh
Confidence 8 88888876567899999998 65 4788999998 999999999987654
No 116
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.55 E-value=6e-15 Score=146.36 Aligned_cols=154 Identities=21% Similarity=0.205 Sum_probs=99.6
Q ss_pred cceeeeE-EEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 044602 110 HILKGIT-GSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETL 188 (674)
Q Consensus 110 ~iL~~vs-~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l 188 (674)
+.|+++. +-+++|++++|+||||||||||++.+++ .. .+. +.|+..++.+ +.. .+
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~---~~-~~~---------------v~~i~~~~~~----~~~-~~ 62 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL---LS-GKK---------------VAYVDTEGGF----SPE-RL 62 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH---HH-CSE---------------EEEEESSCCC----CHH-HH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH---Hc-CCc---------------EEEEECCCCC----CHH-HH
Confidence 3566666 4799999999999999999999999998 11 222 2333322211 111 11
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHH--HHHHHHHHHHhhC-CCEEEEeCCCCCCC
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGE--RKRTSIGYEILVD-PSLLLLDEPTSGLD 265 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe--rqRv~iA~aL~~~-P~illLDEPTsgLD 265 (674)
.-... .. .... +++++.+. + ...|+++ +|+++.+++++.+ |+++++||||+.+|
T Consensus 63 ~~~~~-~~--~~~~-------~~~~~~~~--------~-----~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~ 119 (220)
T 2cvh_A 63 VQMAE-TR--GLNP-------EEALSRFI--------L-----FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYR 119 (220)
T ss_dssp HHHHH-TT--TCCH-------HHHHHHEE--------E-----ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTT
T ss_pred HHHHH-hc--CCCh-------HHHhhcEE--------E-----EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhh
Confidence 10000 00 1111 11222221 1 1344553 6788889999986 99999999999999
Q ss_pred HHH--------HHHHHHHHHHHHhC-CcEEEEEecCCch------------HHHhhcCEEEEEeCC
Q 044602 266 STS--------ANKLIQVLQKVAKA-GRTVITTIHQPSS------------RMFHMFDKLLLISEG 310 (674)
Q Consensus 266 ~~~--------~~~i~~~L~~l~~~-g~tvi~~~H~~~~------------~i~~~~D~v~~L~~G 310 (674)
+.. ...+++.|++++++ |.|||+++|.... .+...||++++|++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 120 AEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 743 24566668887764 8999999998642 467889999999854
No 117
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.53 E-value=1.3e-17 Score=162.55 Aligned_cols=152 Identities=13% Similarity=0.041 Sum_probs=95.1
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChh--ccccEEEEccCCCCCCCCCHHHHHHHHHhhc
Q 044602 118 SICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPA--LKRRIGFVTQDDVLLPQLTVEETLVFAAFLR 195 (674)
Q Consensus 118 ~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~--~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~ 195 (674)
.+++|++++|+||||||||||+++|+|.. ..|.|.++|.++... .++.++|++|+.. +.+||.||+.+.+...
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~---~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~~ 79 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLP---GVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGRY 79 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCS---SSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhcc---CCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHHH
Confidence 36799999999999999999999999962 479999998765321 1234677777643 3568999987654221
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 044602 196 LPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQV 275 (674)
Q Consensus 196 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~ 275 (674)
..... ...++.+++..++..... . +..+..+|+|++||++++|++.++|+++ +|+.....+.+.
T Consensus 80 ~~~~~-----~~~~~~~~~~~~l~~~~~--~-~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~ 143 (191)
T 1zp6_A 80 AKEGY-----FVILDGVVRPDWLPAFTA--L-ARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQ 143 (191)
T ss_dssp HHTSC-----EEEECSCCCTTTTHHHHT--T-CSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHH
T ss_pred hccCC-----eEEEeccCcHHHHHHHHh--c-CCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHH
Confidence 00000 000011111111111110 0 1112369999999999999999999876 688877777777
Q ss_pred HHHHHhCCcEEEEEe
Q 044602 276 LQKVAKAGRTVITTI 290 (674)
Q Consensus 276 L~~l~~~g~tvi~~~ 290 (674)
++.+.+.+..+|.++
T Consensus 144 ~~~l~~~~~~~i~t~ 158 (191)
T 1zp6_A 144 FADLGAFEHHVLPVS 158 (191)
T ss_dssp TTCCGGGGGGEEECT
T ss_pred HhccCcccccEEECC
Confidence 765543233344333
No 118
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.52 E-value=8.7e-16 Score=167.75 Aligned_cols=174 Identities=12% Similarity=0.105 Sum_probs=112.4
Q ss_pred cccceeeeEEEEeCCeE--EEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHH
Q 044602 108 YKHILKGITGSICPGEI--LALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVE 185 (674)
Q Consensus 108 ~~~iL~~vs~~i~~Ge~--~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~ 185 (674)
..+ |+++|+++++|++ ++|+||||||||||+|+|+|... .|.-.- ... ....++.++|++|++.+++.+||.
T Consensus 27 ~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l---~g~~~~-~~~-~~~~~~~i~~v~Q~~~l~~~ltv~ 100 (427)
T 2qag_B 27 SLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF---EGEPAT-HTQ-PGVQLQSNTYDLQESNVRLKLTIV 100 (427)
T ss_dssp --C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-----------CC-SSCEEEEEEEEEEC--CEEEEEEE
T ss_pred Cee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc---cCCcCC-CCC-ccceEeeEEEEeecCccccccchh
Confidence 345 9999999999999 99999999999999999999741 222110 000 112345799999999888889999
Q ss_pred HHHHHHHhhcCCCCC-CH---HHHHHHHHHHHHHc-CCCc----ccccc----cc--CCccCccCHHHHHHHHHHHHHhh
Q 044602 186 ETLVFAAFLRLPGNM-NR---QQKYARVQMILKEL-GLER----CRHTR----VG--GGFIKGISGGERKRTSIGYEILV 250 (674)
Q Consensus 186 e~l~~~~~~~~~~~~-~~---~~~~~~v~~~l~~l-gL~~----~~~~~----vg--~~~~~~LSgGerqRv~iA~aL~~ 250 (674)
||+.|+.... ... .+ +......++.++.. ++.. ..|++ +. ....++|+-.+ +.|+++|..
T Consensus 101 D~~~~g~~~~--~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~~ 175 (427)
T 2qag_B 101 STVGFGDQIN--KEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLDS 175 (427)
T ss_dssp EEECCCC-CC--HHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHTCS
T ss_pred hhhhhhhccc--cchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHHhh
Confidence 9987753210 000 00 11233455566654 4431 12322 11 00113577666 789999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCcEEEEEecC
Q 044602 251 DPSLLLLDEPTSGLDSTSANKLIQVLQK-VAKAGRTVITTIHQ 292 (674)
Q Consensus 251 ~P~illLDEPTsgLD~~~~~~i~~~L~~-l~~~g~tvi~~~H~ 292 (674)
+++|+++||||..|.+.....+.+.+++ +...|.+|+.++.+
T Consensus 176 ~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 176 KVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp CSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred CCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 9999999999999999999999998886 77779999888754
No 119
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.52 E-value=3.3e-18 Score=184.76 Aligned_cols=162 Identities=14% Similarity=0.076 Sum_probs=103.1
Q ss_pred ceeeeEEEEeC--CeEEEEEcCCCCcHHHHHHHHHcCCCCCCc----cEEEEC----CEeCC---hhccccEEEEccCCC
Q 044602 111 ILKGITGSICP--GEILALMGPSGSGKTTLLKIVGGRLTDDVK----GNITYN----DIPYN---PALKRRIGFVTQDDV 177 (674)
Q Consensus 111 iL~~vs~~i~~--Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~----G~I~~~----g~~~~---~~~~~~igyv~Q~~~ 177 (674)
+.+.|++.+++ |+.++|+||||||||||+|+|+|++. +.+ |+|.++ |.+.. .++ +.|++++|+..
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~-~~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN-TTSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT-CEEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC-CCcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHHH
Confidence 46789999999 99999999999999999999999874 457 777663 22211 011 12333333221
Q ss_pred CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHh-hCCCEEE
Q 044602 178 LLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEIL-VDPSLLL 256 (674)
Q Consensus 178 l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~-~~P~ill 256 (674)
+++ .|+.||+.+. + .+..++. ...+|+|++||..+++++. .+|++++
T Consensus 235 ~~~-~t~~~nl~~~-------------------------~-~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~lll 282 (365)
T 1lw7_A 235 DYA-VRHSHKIAFI-------------------------D-TDFITTQ-----AFCIQYEGKAHPFLDSMIKEYPFDVTI 282 (365)
T ss_dssp HHH-HHHCSSEEEE-------------------------S-SCHHHHH-----HHHHHHHSCCCHHHHHHHHHSCCSEEE
T ss_pred HHH-HhccCCEEEE-------------------------e-CCchHHH-----HHHHHHcCCCCHHHHHHHhhcCCCEEE
Confidence 111 1222222110 0 1111111 1246778888888888775 5999999
Q ss_pred EeC---CC------CCCCHHHHHHHHHHHHHHHh-CCcEEEEEecCCchHHHhhcCEEEEEe
Q 044602 257 LDE---PT------SGLDSTSANKLIQVLQKVAK-AGRTVITTIHQPSSRMFHMFDKLLLIS 308 (674)
Q Consensus 257 LDE---PT------sgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~ 308 (674)
||| |+ .++|...+..+.+.|+++.+ .|.++++++|. + +..+++|++.+++
T Consensus 283 LdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 283 LLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIE 342 (365)
T ss_dssp EEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHH
T ss_pred ECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHH
Confidence 999 65 58999999999999988765 48999999975 3 3456666665554
No 120
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.52 E-value=1.3e-15 Score=164.92 Aligned_cols=132 Identities=19% Similarity=0.313 Sum_probs=100.0
Q ss_pred cceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHH
Q 044602 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLV 189 (674)
Q Consensus 110 ~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~ 189 (674)
.+|++++ +++|++++|+||||||||||+++|+|.+.+..+|+|.+.|.++....++.++||+|..
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~------------- 190 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQRE------------- 190 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEE-------------
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeee-------------
Confidence 4788876 8999999999999999999999999976432279998877666434566788888841
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 044602 190 FAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSA 269 (674)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~ 269 (674)
+|+.. ..+ +.+|+++|..+|+++++|||| |.++.
T Consensus 191 --------------------------~g~~~-----------~~~------~~~l~~~L~~~pd~illdE~~---d~e~~ 224 (372)
T 2ewv_A 191 --------------------------VGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLETV 224 (372)
T ss_dssp --------------------------BTTTB-----------SCS------HHHHHHHTTSCCSEEEESCCC---SHHHH
T ss_pred --------------------------cCCCH-----------HHH------HHHHHHHhhhCcCEEEECCCC---CHHHH
Confidence 22210 134 469999999999999999999 77664
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEe
Q 044602 270 NKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLIS 308 (674)
Q Consensus 270 ~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 308 (674)
.. .++. +..|.+++.++|+.+ +.+.+||++.|.
T Consensus 225 ~~---~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l~ 257 (372)
T 2ewv_A 225 ET---ALRA-AETGHLVFGTLHTNT--AIDTIHRIVDIF 257 (372)
T ss_dssp HH---HHHH-HTTTCEEEECCCCCS--HHHHHHHHHHTS
T ss_pred HH---HHHH-HhcCCEEEEEECcch--HHHHHHHHHHhc
Confidence 43 3443 356899999999954 577888887664
No 121
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.51 E-value=1.8e-17 Score=168.95 Aligned_cols=153 Identities=18% Similarity=0.263 Sum_probs=102.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHH---cCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCC
Q 044602 121 PGEILALMGPSGSGKTTLLKIVG---GRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLP 197 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~---G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~ 197 (674)
++++++|+||||||||||+++|+ |.. .+..|+|.++|.+......+.+++++|+..+++..|+.+++.........
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~-~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~ 104 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQ-HLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRG 104 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCC-CEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCe-EecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Confidence 47999999999999999999999 976 44589998887654323334456677888888888999999875321000
Q ss_pred -----CCCCHHHHHHHHHHHHH--HcCCCccc-------cccccCCccCccCHHHHHHHHHHHHH-hhCCCEEEEe----
Q 044602 198 -----GNMNRQQKYARVQMILK--ELGLERCR-------HTRVGGGFIKGISGGERKRTSIGYEI-LVDPSLLLLD---- 258 (674)
Q Consensus 198 -----~~~~~~~~~~~v~~~l~--~lgL~~~~-------~~~vg~~~~~~LSgGerqRv~iA~aL-~~~P~illLD---- 258 (674)
....+.. ..++.+.+ .+++--.. -.++.++.+..||| |+ +++ +.+|++++||
T Consensus 105 ~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~ 175 (246)
T 2bbw_A 105 QHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTG 175 (246)
T ss_dssp SCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTTC
T ss_pred CeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccccccccc
Confidence 0111111 12222221 12200000 01111233457999 66 677 9999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCC
Q 044602 259 EPTSGLDSTSANKLIQVLQKVAKAG 283 (674)
Q Consensus 259 EPTsgLD~~~~~~i~~~L~~l~~~g 283 (674)
|||++||..+...+.+.++++.+++
T Consensus 176 EP~~~ld~~~~~~i~~~l~~~~~~~ 200 (246)
T 2bbw_A 176 EPLVQQEDDKPEAVAARLRQYKDVA 200 (246)
T ss_dssp CBCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred cccccCCCCcHHHHHHHHHHHHHhH
Confidence 9999999999999999999887643
No 122
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.49 E-value=6.9e-18 Score=179.00 Aligned_cols=162 Identities=15% Similarity=0.108 Sum_probs=106.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCCC-------CCCccEEEECCEeCCh-------------------hccccEEEE---
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGRLT-------DDVKGNITYNDIPYNP-------------------ALKRRIGFV--- 172 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~~~-------~~~~G~I~~~g~~~~~-------------------~~~~~igyv--- 172 (674)
=++++|+|+||||||||+|.|.|... .+..|+|.+||.++.. ++++.++++
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~ 83 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDN 83 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhH
Confidence 36899999999999999999998752 3468999999987642 233457777
Q ss_pred ccCCCCCCCCCHHHHHHHHHhhcCCCCC---CHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHh
Q 044602 173 TQDDVLLPQLTVEETLVFAAFLRLPGNM---NRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEIL 249 (674)
Q Consensus 173 ~Q~~~l~~~lTV~e~l~~~~~~~~~~~~---~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~ 249 (674)
+|+..+++..+|.||..++......... .......+++.++..+++.+..++.. ++|+||+||+..+++++
T Consensus 84 ~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~------~ls~g~~Q~~~ad~ill 157 (318)
T 1nij_A 84 LDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN------QFTIAQSQVGYADRILL 157 (318)
T ss_dssp HHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH------HCHHHHHHHHTCSEEEE
T ss_pred HhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh------hchHHHHHHHhCCEEEE
Confidence 6776666677888876543110000000 00000011122233344444444322 69999999999888888
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcC
Q 044602 250 VDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFD 302 (674)
Q Consensus 250 ~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 302 (674)
.+|+++ ||| ..+.+.|+++. .+.||++++|++.+ +..++|
T Consensus 158 ~k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~~-~~~l~~ 197 (318)
T 1nij_A 158 TKTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDID-LGLLFN 197 (318)
T ss_dssp ECTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCCC-GGGGSC
T ss_pred ECcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCCC-HHHHhC
Confidence 999887 888 77888888875 58999999998653 333443
No 123
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.49 E-value=5.5e-15 Score=159.37 Aligned_cols=137 Identities=19% Similarity=0.203 Sum_probs=100.3
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeC-Ch-hccccEEEEc-cCCCCCCCCCHHHH
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPY-NP-ALKRRIGFVT-QDDVLLPQLTVEET 187 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~-~~-~~~~~igyv~-Q~~~l~~~lTV~e~ 187 (674)
+++++|+.+++|++++|+||||||||||+|+|+|.++ +.+|.|.++|..- .. ..++.++|++ |++.+
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~-~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~--------- 233 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP-FDQRLITIEDVPELFLPDHPNHVHLFYPSEAKE--------- 233 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC-TTSCEEEEESSSCCCCTTCSSEEEEECC--------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC-CCceEEEECCccccCccccCCEEEEeecCcccc---------
Confidence 3499999999999999999999999999999999874 4699999998532 21 2567799998 65431
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 044602 188 LVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDST 267 (674)
Q Consensus 188 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~ 267 (674)
+++++..+|-.|+.++..+|+.+++||++.
T Consensus 234 ---------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~----- 263 (361)
T 2gza_A 234 ---------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG----- 263 (361)
T ss_dssp --------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS-----
T ss_pred ---------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH-----
Confidence 011222355666667777899999999986
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCE
Q 044602 268 SANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGY 311 (674)
Q Consensus 268 ~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 311 (674)
.++.+.|+.+.....|++.++|..+ ....+||+..+.+|.
T Consensus 264 --~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 264 --GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQN 303 (361)
T ss_dssp --THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTTS
T ss_pred --HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhcc
Confidence 2455667776543467899999965 467889998888764
No 124
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.48 E-value=1.4e-14 Score=155.26 Aligned_cols=123 Identities=18% Similarity=0.201 Sum_probs=88.9
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEEC-CEeCChhccccEEEEccCCCCCCCCCHHHHHH
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN-DIPYNPALKRRIGFVTQDDVLLPQLTVEETLV 189 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~-g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~ 189 (674)
-+++++.. .+|++++|+||||||||||+|+|+|....+.+|+|.++ |.+.....++.+++++|+..++++.||+|+
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~-- 281 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREF-- 281 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHTC--
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHh--
Confidence 35666664 47999999999999999999999998741568999987 766544456689999999989998899984
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHH
Q 044602 190 FAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEI 248 (674)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL 248 (674)
+ + ...+.++..+.+.++++.+|+.+..+... .++| ||+||++||+++
T Consensus 282 -~--l---~~l~~~e~~~~~~e~l~~~gl~~f~~~~~-----~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 282 -G--L---WHLEPEQITQGFVEFHDYLGHCKYRDCKH-----DADP-GCAIREAVENGA 328 (358)
T ss_dssp -C--C---CCCCHHHHHHTSGGGGGGTTCSSSTTCCS-----SSCT-TCHHHHHHHHTS
T ss_pred -h--h---cCCCHHHHHHHHHHHHHHcCCchhcCCCc-----ccCC-HHHHHHHHHhcC
Confidence 1 1 13455666677889999999987777654 4899 999999999764
No 125
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.46 E-value=3.3e-16 Score=151.25 Aligned_cols=137 Identities=16% Similarity=0.198 Sum_probs=90.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCC--CccEEEECCEeCC-------hhcc-ccEE----EEccCCCCCCCCCHHHHH
Q 044602 123 EILALMGPSGSGKTTLLKIVGGRLTDD--VKGNITYNDIPYN-------PALK-RRIG----FVTQDDVLLPQLTVEETL 188 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G~~~~~--~~G~I~~~g~~~~-------~~~~-~~ig----yv~Q~~~l~~~lTV~e~l 188 (674)
++++|+|+||||||||+++|+|.+.+. ..|.|.+||.++. +.+| +.+| +++|+..+| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 589999999999999999999977432 2799999998732 2345 3567 889987655 110
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHH-cCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEE-------EEeCC
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKE-LGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLL-------LLDEP 260 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~-lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~il-------lLDEP 260 (674)
. .. +....++++++. + + ..|+.+++ +||||||||++|||+++.+|++. .-|.|
T Consensus 77 --------~---~~-~~~a~l~~~i~~~l--~-g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~ 137 (171)
T 2f1r_A 77 --------V---SE-EEGNDLDWIYERYL--S-DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDER 137 (171)
T ss_dssp --------C---CH-HHHTCHHHHHHHHT--T-TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSC
T ss_pred --------C---Ch-hhhhCHHHHHHhhC--C-CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCC
Confidence 0 11 112245667766 5 4 57898885 59999999999999999999873 23554
Q ss_pred CCC---CCHHHHHHHHHHHHHHHhCCc
Q 044602 261 TSG---LDSTSANKLIQVLQKVAKAGR 284 (674)
Q Consensus 261 Tsg---LD~~~~~~i~~~L~~l~~~g~ 284 (674)
..+ +|......+.+.+.+...+|.
T Consensus 138 ~~~~~~f~~~~~~~~a~~i~~~~~~~~ 164 (171)
T 2f1r_A 138 VDGHKWFRRDEVERIAEFILSLLREGG 164 (171)
T ss_dssp CSSSCEECTTCHHHHHHHHHHHHTC--
T ss_pred cccCcccCcccHHHHHHHHHHHHhccC
Confidence 322 345566778888766665553
No 126
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.44 E-value=3.4e-15 Score=165.20 Aligned_cols=153 Identities=12% Similarity=0.103 Sum_probs=105.3
Q ss_pred eeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--------h--ccccEEEEccCCCCCCC
Q 044602 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--------A--LKRRIGFVTQDDVLLPQ 181 (674)
Q Consensus 112 L~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--------~--~~~~igyv~Q~~~l~~~ 181 (674)
-+++|+++++|++++|+|+||||||||+++|+|++. +.+|+|.++|.+... . .++.++|++|+..+++.
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~-~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~ 361 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE-QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 361 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh-hcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHH
Confidence 478999999999999999999999999999999874 458999998776531 1 25679999999888888
Q ss_pred CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHh-hCC-CEEEEeC
Q 044602 182 LTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEIL-VDP-SLLLLDE 259 (674)
Q Consensus 182 lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~-~~P-~illLDE 259 (674)
+||++|+.++.... .+ . -+++..|+.+... .+-.--+|++.+++++. ..| .+||..+
T Consensus 362 ~tV~e~l~~a~~~~----~D------v--VLIDTaGrl~~~~---------~lm~EL~kiv~iar~l~~~~P~evLLvLD 420 (503)
T 2yhs_A 362 SVIFDAIQAAKARN----ID------V--LIADTAGRLQNKS---------HLMEELKKIVRVMKKLDVEAPHEVMLTID 420 (503)
T ss_dssp HHHHHHHHHHHHTT----CS------E--EEECCCCSCCCHH---------HHHHHHHHHHHHHHTTCTTCSSEEEEEEE
T ss_pred HHHHHHHHHHHhcC----CC------E--EEEeCCCccchhh---------hHHHHHHHHHHHHHHhccCCCCeeEEEec
Confidence 89999999874311 00 0 0112222221111 12122357888888764 457 4666656
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecC
Q 044602 260 PTSGLDSTSANKLIQVLQKVAK-AGRTVITTIHQ 292 (674)
Q Consensus 260 PTsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~ 292 (674)
||+|.|.. +.++.+.+ .|.|.|++||-
T Consensus 421 attGq~al------~~ak~f~~~~~itgvIlTKL 448 (503)
T 2yhs_A 421 ASTGQNAV------SQAKLFHEAVGLTGITLTKL 448 (503)
T ss_dssp GGGTHHHH------HHHHHHHHHTCCSEEEEECG
T ss_pred CcccHHHH------HHHHHHHhhcCCCEEEEEcC
Confidence 88886544 33444443 48899999994
No 127
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.44 E-value=1.4e-13 Score=138.51 Aligned_cols=146 Identities=18% Similarity=0.285 Sum_probs=86.3
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHHc--CCCC----CCccEEEECCEeC-Ch-h---ccccEEEEccCCCCCCCCCHH
Q 044602 117 GSICPGEILALMGPSGSGKTTLLKIVGG--RLTD----DVKGNITYNDIPY-NP-A---LKRRIGFVTQDDVLLPQLTVE 185 (674)
Q Consensus 117 ~~i~~Ge~~ailG~sGsGKSTLl~~L~G--~~~~----~~~G~I~~~g~~~-~~-~---~~~~igyv~Q~~~l~~~lTV~ 185 (674)
+-+++|++++|+||||||||||++.|++ ...+ ...|.+++++.+. .. . ..+.+++.+|
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~----------- 87 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGS----------- 87 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-----------
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHH-----------
Confidence 5699999999999999999999999998 3322 1356677766542 11 0 0111111111
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHH-HHHHHHHh--hCCCEEEEeCCCC
Q 044602 186 ETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKR-TSIGYEIL--VDPSLLLLDEPTS 262 (674)
Q Consensus 186 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR-v~iA~aL~--~~P~illLDEPTs 262 (674)
++++.+.+ ....+..+... +.-+.+++ .+|+++++||||+
T Consensus 88 -------------------------~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 88 -------------------------DVLDNVAY------------ARAFNTDHQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp -------------------------HHHHTEEE------------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred -------------------------HHhhCeEE------------EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 11221100 11244444332 33333444 4899999999999
Q ss_pred CCCHH-------H-----HHHHHHHHHHHHhC-CcEEEEEecCCchH------------------HHhhcCEEEEEeCC
Q 044602 263 GLDST-------S-----ANKLIQVLQKVAKA-GRTVITTIHQPSSR------------------MFHMFDKLLLISEG 310 (674)
Q Consensus 263 gLD~~-------~-----~~~i~~~L~~l~~~-g~tvi~~~H~~~~~------------------i~~~~D~v~~L~~G 310 (674)
.+|+. . ...+++.|++++++ |.|||+++|..... +...||.+++|++|
T Consensus 131 ~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 131 LYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp GGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 99985 3 34566667766654 99999999964321 22279999999865
No 128
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.43 E-value=4.2e-13 Score=145.11 Aligned_cols=76 Identities=26% Similarity=0.416 Sum_probs=67.5
Q ss_pred ccCccCHHHHHHH------HHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcC
Q 044602 230 FIKGISGGERKRT------SIGYEILVD-PSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFD 302 (674)
Q Consensus 230 ~~~~LSgGerqRv------~iA~aL~~~-P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 302 (674)
.+..||||||||+ ++|++|+.+ |++|||||||+|||+..+..+.+.|+++. ++.+||++||++. +...||
T Consensus 277 ~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~--~~~~~d 353 (371)
T 3auy_A 277 TIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHRE--LEDVAD 353 (371)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGG--GGGGCS
T ss_pred chHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHH--HHhhCC
Confidence 3468999999988 567899999 99999999999999999999999999874 3579999999974 578999
Q ss_pred EEEEEe
Q 044602 303 KLLLIS 308 (674)
Q Consensus 303 ~v~~L~ 308 (674)
++++|+
T Consensus 354 ~~~~l~ 359 (371)
T 3auy_A 354 VIINVK 359 (371)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999997
No 129
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.43 E-value=2.8e-15 Score=142.88 Aligned_cols=79 Identities=20% Similarity=0.114 Sum_probs=67.0
Q ss_pred ccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhcc-ccEEEEccCCCCCCCCCHH
Q 044602 107 DYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALK-RRIGFVTQDDVLLPQLTVE 185 (674)
Q Consensus 107 ~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~-~~igyv~Q~~~l~~~lTV~ 185 (674)
+.+.+++++|+++++|++++|+||||||||||+|+|+|.+ + .+|+|.++|.++..... ++ +++|+..++ .+||.
T Consensus 18 g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~-~~G~V~~~g~~i~~~~~~~~--~~~q~~~l~-~ltv~ 92 (158)
T 1htw_A 18 GKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-G-HQGNVKSPTYTLVEEYNIAG--KMIYHFDLY-RLADP 92 (158)
T ss_dssp HHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-T-CCSCCCCCTTTCEEEEEETT--EEEEEEECT-TCSCT
T ss_pred HHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-C-CCCeEEECCEeeeeeccCCC--cceeccccc-cCCcH
Confidence 4467999999999999999999999999999999999988 4 58999999988743211 22 799998888 89999
Q ss_pred HHHHH
Q 044602 186 ETLVF 190 (674)
Q Consensus 186 e~l~~ 190 (674)
||+.+
T Consensus 93 e~l~~ 97 (158)
T 1htw_A 93 EELEF 97 (158)
T ss_dssp THHHH
T ss_pred HHHHH
Confidence 99965
No 130
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.42 E-value=4.6e-16 Score=166.25 Aligned_cols=162 Identities=15% Similarity=0.210 Sum_probs=109.2
Q ss_pred cccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--------hccccEEEEccCCCCC
Q 044602 108 YKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--------ALKRRIGFVTQDDVLL 179 (674)
Q Consensus 108 ~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--------~~~~~igyv~Q~~~l~ 179 (674)
.+.+|+++|+++++|++++|+||||||||||+|+|+|.+. +.+|+|.+.|.+... ..++++++++|++.++
T Consensus 41 ~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~-~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~ 119 (337)
T 2qm8_A 41 VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT-AAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAF 119 (337)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH-HTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEE
T ss_pred hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh-hCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccc
Confidence 3569999999999999999999999999999999999774 458999999987632 2456799999998877
Q ss_pred CCC------------CHHHHHHHHH-----------------------------hhcCCCCCCHHHHH---HHHHHHHHH
Q 044602 180 PQL------------TVEETLVFAA-----------------------------FLRLPGNMNRQQKY---ARVQMILKE 215 (674)
Q Consensus 180 ~~l------------TV~e~l~~~~-----------------------------~~~~~~~~~~~~~~---~~v~~~l~~ 215 (674)
+.. ++.|.+.... .+..+. ...+.+ +.+.+....
T Consensus 120 ~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~--~~~~~~~i~~~i~~~~~i 197 (337)
T 2qm8_A 120 IRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPG--AGDELQGIKKGIFELADM 197 (337)
T ss_dssp EECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSC--C------CCTTHHHHCSE
T ss_pred cccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCC--CcccHHHHHHHHhccccE
Confidence 532 1233321100 000000 000000 011111111
Q ss_pred cCCCccccccccCCccCccCHHHHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 044602 216 LGLERCRHTRVGGGFIKGISGGERKRTSIGYEILV------DPSLLLLDEPTSGLDSTSANKLIQVLQKVAK 281 (674)
Q Consensus 216 lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~------~P~illLDEPTsgLD~~~~~~i~~~L~~l~~ 281 (674)
+.+ +..|.. ....+|+|++|++..+++++. +|++++ ||++|......+.+.|.++.+
T Consensus 198 vvl-NK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 198 IAV-NKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp EEE-ECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred EEE-Echhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 222 222210 113589999999999999987 688887 999999999999999988653
No 131
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.41 E-value=3.1e-14 Score=151.32 Aligned_cols=143 Identities=10% Similarity=0.097 Sum_probs=99.5
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--------hccc--cEEEEccCCCCCCCCCHHHHH
Q 044602 119 ICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--------ALKR--RIGFVTQDDVLLPQLTVEETL 188 (674)
Q Consensus 119 i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--------~~~~--~igyv~Q~~~l~~~lTV~e~l 188 (674)
.++|++++|+||||||||||++.|+|.+. +.+|+|.++|.+... .+++ .+.+++|+..++|.+||+||+
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~-~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLK-NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 37899999999999999999999999874 458999999998742 1222 466999999999999999999
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTS 268 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~ 268 (674)
.++...... . .+++..|+.+..+.. ..+|| .+++++..++++++||.+|.
T Consensus 205 ~~~~~~~~d----------~--vliDtaG~~~~~~~l-----~~eL~-------~i~ral~~de~llvLDa~t~------ 254 (328)
T 3e70_C 205 QHAKARGID----------V--VLIDTAGRSETNRNL-----MDEMK-------KIARVTKPNLVIFVGDALAG------ 254 (328)
T ss_dssp HHHHHHTCS----------E--EEEEECCSCCTTTCH-----HHHHH-------HHHHHHCCSEEEEEEEGGGT------
T ss_pred HHHHhccch----------h--hHHhhccchhHHHHH-----HHHHH-------HHHHHhcCCCCEEEEecHHH------
Confidence 876321100 0 012222332222211 12343 48899998888888885554
Q ss_pred HHHHHHHHHHHHh-CCcEEEEEecCC
Q 044602 269 ANKLIQVLQKVAK-AGRTVITTIHQP 293 (674)
Q Consensus 269 ~~~i~~~L~~l~~-~g~tvi~~~H~~ 293 (674)
..+++.++.+.+ .+.|+|++||..
T Consensus 255 -~~~~~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 255 -NAIVEQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp -THHHHHHHHHHHHSCCCEEEEECGG
T ss_pred -HHHHHHHHHHHHhcCCCEEEEeCcC
Confidence 355566666654 489999999964
No 132
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.40 E-value=1.2e-14 Score=151.96 Aligned_cols=130 Identities=18% Similarity=0.186 Sum_probs=89.1
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHh---hcC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAF---LRL 196 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~---~~~ 196 (674)
+++.+++|.||||||||||.+.|++.+.+ .| . . ++.+.+|+||+.+++. ++++|+.++.. +..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~--~g------~----~-~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~~ 94 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME--KY------G----G-EKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLLQ 94 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH--HH------G----G-GSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGGS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh--cC------C----C-CceEEEeccccccCCh-HHHHHHhccccccchhh
Confidence 47899999999999999999999987732 22 0 1 4456677999999986 99999988631 000
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccccc------cccCCccCccCHHHHHHHHHH--HHHhhCCCEEEEeCCCCCCCHHH
Q 044602 197 PGNMNRQQKYARVQMILKELGLERCRHT------RVGGGFIKGISGGERKRTSIG--YEILVDPSLLLLDEPTSGLDSTS 268 (674)
Q Consensus 197 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~------~vg~~~~~~LSgGerqRv~iA--~aL~~~P~illLDEPTsgLD~~~ 268 (674)
..+.+.....+...+.++.+.- ..+| .+. .+.+.+||||+||+++| +++ +|+|||+||||+++|+..
T Consensus 95 ~~g~p~a~d~~~l~~~l~~l~~--g~~t~~~~~v~~p-~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 95 GRGLPGTHDMKLLQEVLNTIFN--NNEHPDQDTVVLP-KYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SSCSTTSBCHHHHHHHHHHHTC--------CCEEEEC-CEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hccCcchhHHHHHHHHHHHhhc--cCccccCcceeec-cCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 0011111123455666776632 2221 111 23468999999999997 555 999999999999999864
No 133
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.36 E-value=2.7e-14 Score=156.26 Aligned_cols=169 Identities=15% Similarity=0.199 Sum_probs=99.2
Q ss_pred eeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHH
Q 044602 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFA 191 (674)
Q Consensus 112 L~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~ 191 (674)
-++++++++.|+.++|+|+|||||||||++|+|.. + .+.+.+.. .+...+|+|.+++. ..+++.|+.-+.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~-~------~i~~~~ft-Tl~p~~G~V~~~~~--~~~~l~DtpGli 216 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH-P------KIAPYPFT-TLSPNLGVVEVSEE--ERFTLADIPGII 216 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC-C------EECCCTTC-SSCCEEEEEECSSS--CEEEEEECCCCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC-c------cccCcccc-eecceeeEEEecCc--ceEEEEeccccc
Confidence 48999999999999999999999999999999864 2 23333322 12334666665530 001111110000
Q ss_pred HhhcCCCCCCHHH--HHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 044602 192 AFLRLPGNMNRQQ--KYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSA 269 (674)
Q Consensus 192 ~~~~~~~~~~~~~--~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~ 269 (674)
........+.... ..++++.++..+++. +. ...++|+||+||+.+|++|+.+|.++++ +.+|...+
T Consensus 217 ~~a~~~~~L~~~fl~~~era~~lL~vvDls---~~-----~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~ 284 (416)
T 1udx_A 217 EGASEGKGLGLEFLRHIARTRVLLYVLDAA---DE-----PLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE 284 (416)
T ss_dssp CCGGGSCCSCHHHHHHHTSSSEEEEEEETT---SC-----HHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH
T ss_pred cchhhhhhhhHHHHHHHHHHHhhhEEeCCc---cC-----CHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH
Confidence 0000000111110 011122233333433 22 2347999999999999999999999999 99999877
Q ss_pred HHHHHHHHHH-HhCCcEEEEEecCCchHHHhhcCE
Q 044602 270 NKLIQVLQKV-AKAGRTVITTIHQPSSRMFHMFDK 303 (674)
Q Consensus 270 ~~i~~~L~~l-~~~g~tvi~~~H~~~~~i~~~~D~ 303 (674)
..++.+++. .+.|.+++.+|......+.++++.
T Consensus 285 -~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~ 318 (416)
T 1udx_A 285 -EAVKALADALAREGLAVLPVSALTGAGLPALKEA 318 (416)
T ss_dssp -HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHH
T ss_pred -HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHH
Confidence 444545444 345777776654433345555443
No 134
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.35 E-value=5e-13 Score=125.89 Aligned_cols=96 Identities=15% Similarity=0.290 Sum_probs=72.2
Q ss_pred cceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCcc--EEEECCEeCChhccccEEEEccCCCCCCCCCHHHH
Q 044602 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKG--NITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEET 187 (674)
Q Consensus 110 ~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G--~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~ 187 (674)
.+|+++ +|+.++|+||||+|||||++++++...+ +| .+++++.+... .
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~--~g~~~~~~~~~~~~~----------------~------- 78 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE--AGKNAAYIDAASMPL----------------T------- 78 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT--TTCCEEEEETTTSCC----------------C-------
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh--cCCcEEEEcHHHhhH----------------H-------
Confidence 467777 8999999999999999999999986633 45 34433322110 0
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 044602 188 LVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDST 267 (674)
Q Consensus 188 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~ 267 (674)
+++.+|++|++|||++ +|..
T Consensus 79 -----------------------------------------------------------~~~~~~~lLilDE~~~-~~~~ 98 (149)
T 2kjq_A 79 -----------------------------------------------------------DAAFEAEYLAVDQVEK-LGNE 98 (149)
T ss_dssp -----------------------------------------------------------GGGGGCSEEEEESTTC-CCSH
T ss_pred -----------------------------------------------------------HHHhCCCEEEEeCccc-cChH
Confidence 1246799999999998 6666
Q ss_pred HHHHHHHHHHHHHhCCcE-EEEEecCCch
Q 044602 268 SANKLIQVLQKVAKAGRT-VITTIHQPSS 295 (674)
Q Consensus 268 ~~~~i~~~L~~l~~~g~t-vi~~~H~~~~ 295 (674)
.+..+.+.++++.++|++ +|+++|.+..
T Consensus 99 ~~~~l~~li~~~~~~g~~~iiits~~~p~ 127 (149)
T 2kjq_A 99 EQALLFSIFNRFRNSGKGFLLLGSEYTPQ 127 (149)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEESSCTT
T ss_pred HHHHHHHHHHHHHHcCCcEEEEECCCCHH
Confidence 688999999998877888 8889886543
No 135
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.34 E-value=1.9e-12 Score=142.71 Aligned_cols=75 Identities=20% Similarity=0.316 Sum_probs=68.4
Q ss_pred CccCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEE
Q 044602 232 KGISGGERKRTSIGYEIL----VDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLI 307 (674)
Q Consensus 232 ~~LSgGerqRv~iA~aL~----~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L 307 (674)
..||||||||++||++|+ .+|++++|||||++||+..+..+.+.|+++.++|.++|++||++ .....||+++.|
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~ 409 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 409 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEE
Confidence 359999999999999999 58999999999999999999999999999876689999999995 357789999999
Q ss_pred e
Q 044602 308 S 308 (674)
Q Consensus 308 ~ 308 (674)
.
T Consensus 410 ~ 410 (430)
T 1w1w_A 410 Y 410 (430)
T ss_dssp E
T ss_pred E
Confidence 6
No 136
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.33 E-value=4.1e-13 Score=129.62 Aligned_cols=49 Identities=16% Similarity=0.205 Sum_probs=43.3
Q ss_pred HhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchH
Q 044602 248 ILVDPSLLLLDEPTS-GLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSR 296 (674)
Q Consensus 248 L~~~P~illLDEPTs-gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~ 296 (674)
.+.+|++|+||||++ ++|+..+..+.+.+++..++|+++|++||.+..+
T Consensus 97 ~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 97 TVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQR 146 (180)
T ss_dssp HHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC
T ss_pred HhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhH
Confidence 355999999999996 9999999999999998877899999999997653
No 137
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.33 E-value=8.3e-13 Score=140.88 Aligned_cols=136 Identities=18% Similarity=0.192 Sum_probs=76.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCH
Q 044602 125 LALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--ALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNR 202 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~ 202 (674)
+.|.||||+|||||+++|++.+..+..|++.++|.+... ..+..+++++|.+.+.-..+ + .+ ....
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~-------~~~~ 106 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D---MG-------NNDR 106 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC----------------CCH
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHh--h---cC-------Ccch
Confidence 899999999999999999994334568999999987642 23567889988765321111 0 00 0011
Q ss_pred HHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 044602 203 QQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKA 282 (674)
Q Consensus 203 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~ 282 (674)
. .+++.++.+......+..+ .+|| +..+|+++++|||++ ||+.++..+.+.|++.. .
T Consensus 107 ~----~~~~~i~~~~~~~~~~~~~------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~-~ 163 (354)
T 1sxj_E 107 I----VIQELLKEVAQMEQVDFQD------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS-K 163 (354)
T ss_dssp H----HHHHHHHHHTTTTC-----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST-T
T ss_pred H----HHHHHHHHHHHhccccccc------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc-C
Confidence 1 2333444332111111111 3566 788999999999999 99999999999998864 4
Q ss_pred CcEEEEEecCCch
Q 044602 283 GRTVITTIHQPSS 295 (674)
Q Consensus 283 g~tvi~~~H~~~~ 295 (674)
+.++|+++|++..
T Consensus 164 ~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 164 NIRLIMVCDSMSP 176 (354)
T ss_dssp TEEEEEEESCSCS
T ss_pred CCEEEEEeCCHHH
Confidence 7899999999764
No 138
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.32 E-value=7.1e-13 Score=144.41 Aligned_cols=146 Identities=17% Similarity=0.227 Sum_probs=88.2
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHH--HcCCCCCC-----ccEEEECCEeC-Ch-h---ccccEEEEccCCCCCCCCCH
Q 044602 117 GSICPGEILALMGPSGSGKTTLLKIV--GGRLTDDV-----KGNITYNDIPY-NP-A---LKRRIGFVTQDDVLLPQLTV 184 (674)
Q Consensus 117 ~~i~~Ge~~ailG~sGsGKSTLl~~L--~G~~~~~~-----~G~I~~~g~~~-~~-~---~~~~igyv~Q~~~l~~~lTV 184 (674)
+-+++|++++|+||||||||||++.| .+.. ++. .+.+++++.+. .. . +.+.+|+.+|
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~-p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~---------- 241 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQI-PLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD---------- 241 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTS-CGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH----------
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhcc-CcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH----------
Confidence 67999999999999999999999954 4544 322 23666666542 11 0 0111111111
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCH-HHHHHHHHHHHHh--hCCCEEEEeCCC
Q 044602 185 EETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISG-GERKRTSIGYEIL--VDPSLLLLDEPT 261 (674)
Q Consensus 185 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg-GerqRv~iA~aL~--~~P~illLDEPT 261 (674)
++++.+- +. +..++ .+.+.+.-+.+++ .+|+++++||||
T Consensus 242 --------------------------~vleni~--------~~----~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t 283 (400)
T 3lda_A 242 --------------------------DALNNVA--------YA----RAYNADHQLRLLDAAAQMMSESRFSLIVVDSVM 283 (400)
T ss_dssp --------------------------HHHHTEE--------EE----ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGG
T ss_pred --------------------------hHhhcEE--------Ee----ccCChHHHHHHHHHHHHHHHhcCCceEEecchh
Confidence 1111110 10 11222 2233333333433 469999999999
Q ss_pred CCCCHHHH------------HHHHHHHHHHHhC-CcEEEEEecCCc------------------hHHHhhcCEEEEEeCC
Q 044602 262 SGLDSTSA------------NKLIQVLQKVAKA-GRTVITTIHQPS------------------SRMFHMFDKLLLISEG 310 (674)
Q Consensus 262 sgLD~~~~------------~~i~~~L~~l~~~-g~tvi~~~H~~~------------------~~i~~~~D~v~~L~~G 310 (674)
+.+|+... ..+++.|++++++ |.|||+++|... ..+...+|.++.|+++
T Consensus 284 ~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 284 ALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp GGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred hhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 99997543 5678888888865 999999999821 2246678999999876
Q ss_pred E
Q 044602 311 Y 311 (674)
Q Consensus 311 ~ 311 (674)
+
T Consensus 364 ~ 364 (400)
T 3lda_A 364 K 364 (400)
T ss_dssp S
T ss_pred C
Confidence 3
No 139
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.32 E-value=6.9e-14 Score=147.13 Aligned_cols=121 Identities=16% Similarity=0.117 Sum_probs=82.3
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEE---CCEeCCh---hcc-ccEEEEccCCCCC-----CCCCHHH
Q 044602 119 ICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITY---NDIPYNP---ALK-RRIGFVTQDDVLL-----PQLTVEE 186 (674)
Q Consensus 119 i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~---~g~~~~~---~~~-~~igyv~Q~~~l~-----~~lTV~e 186 (674)
+.+|++++|+||||||||||+|+|+ .. .+.+|+|.+ +|++... ..+ +.+|||+|++.+. +.+|+ |
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~-~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e 238 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GE-ELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-R 238 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SC-CCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-G
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-Hh-hCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-H
Confidence 3469999999999999999999999 76 446899999 8987653 122 3689999998553 78899 8
Q ss_pred HH--HHHH----hhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCccCccCHHHHHHHHHHHH
Q 044602 187 TL--VFAA----FLRLPGNMNRQQKYARVQMILKELGLER-CRHTRVGGGFIKGISGGERKRTSIGYE 247 (674)
Q Consensus 187 ~l--~~~~----~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~iA~a 247 (674)
|+ .|+. .++........+...+++++++.++|.+ ..+... +.|||.++|++.|||+
T Consensus 239 ~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 239 EVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----KIIKVYLEEIKELCRE 301 (302)
T ss_dssp GGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----HHTTCCCTTHHHHSSC
T ss_pred HHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----HHHHHHHHHHHHHhcc
Confidence 88 4541 0111111112233457899999999986 555543 4799988999999873
No 140
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.32 E-value=3.2e-15 Score=163.82 Aligned_cols=142 Identities=18% Similarity=0.166 Sum_probs=99.2
Q ss_pred hcccccccccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--------hccccEE
Q 044602 99 ASQLSLDKDYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--------ALKRRIG 170 (674)
Q Consensus 99 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--------~~~~~ig 170 (674)
..++++.++...+|+++ + .++|++++|+|||||||||||++|+|.+.+ .+|+|.++|.++.. .+++.++
T Consensus 146 l~~Lg~~~~~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~-~~g~I~~~ed~ie~~~~~~~q~~v~~~~g 222 (418)
T 1p9r_A 146 LHSLGMTAHNHDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNS-SERNILTVEDPIEFDIDGIGQTQVNPRVD 222 (418)
T ss_dssp GGGSCCCHHHHHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCC-TTSCEEEEESSCCSCCSSSEEEECBGGGT
T ss_pred HHHcCCCHHHHHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCC-CCCEEEEecccchhccCCcceEEEccccC
Confidence 34445555555689998 5 389999999999999999999999998754 48999999887631 1334566
Q ss_pred EEc---------cCCCC--CCC----CCHHHHHHHHHhhcC----CCCCCHHHHHHHHHHHHHHcCCCccccccccCCcc
Q 044602 171 FVT---------QDDVL--LPQ----LTVEETLVFAAFLRL----PGNMNRQQKYARVQMILKELGLERCRHTRVGGGFI 231 (674)
Q Consensus 171 yv~---------Q~~~l--~~~----lTV~e~l~~~~~~~~----~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 231 (674)
+.+ |++.. ++. .|+.+++.++..-.. ....+. . .+.+.|..+|+++.. . +
T Consensus 223 ~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~---~-~~i~rL~~lgl~~~~--~-----~ 291 (418)
T 1p9r_A 223 MTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTA---V-GAVTRLRDMGIEPFL--I-----S 291 (418)
T ss_dssp BCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSS---H-HHHHHHHHHTCCHHH--H-----H
T ss_pred cCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhH---H-HHHHHHHHcCCcHHH--H-----H
Confidence 655 88754 343 589999987642110 000111 1 222346778887543 2 2
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEE
Q 044602 232 KGISGGERKRTSIGYEILVDPSLLL 256 (674)
Q Consensus 232 ~~LSgGerqRv~iA~aL~~~P~ill 256 (674)
..|||||+|| ||++|+.+|++..
T Consensus 292 ~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 292 SSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp HHEEEEEEEE--EEEEECTTTCEEE
T ss_pred HHHHHHHHHH--hhhhhcCCCCccC
Confidence 4799999999 9999999999876
No 141
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.29 E-value=1.5e-14 Score=143.53 Aligned_cols=165 Identities=15% Similarity=0.124 Sum_probs=95.0
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCC
Q 044602 119 ICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPG 198 (674)
Q Consensus 119 i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~ 198 (674)
.++|++++|+||||||||||+++|+|.+.+. | ..+|+|++++..++. +..+++........+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~--g--------------~~~g~v~~d~~~~~~-~~~~~~~~~~~~~~~~ 81 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ--G--------------LPAEVVPMDGFHLDN-RLLEPRGLLPRKGAPE 81 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT--T--------------CCEEEEESGGGBCCH-HHHGGGTCGGGTTSGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc--C--------------CceEEEecCCCcCCH-HHHHHhcccccCCCCc
Confidence 5799999999999999999999999987421 2 235666666554432 2222221000000111
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHH-HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 044602 199 NMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIG-YEILVDPSLLLLDEPTSGLDSTSANKLIQVLQ 277 (674)
Q Consensus 199 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA-~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~ 277 (674)
.... ....+.+..+...+..+.++.+... .+|+||+||+++| ++++.++.++++|||.- .
T Consensus 82 ~~~~----~~~~~~l~~l~~~~~i~~p~~d~~~-~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~--------------~ 142 (208)
T 3c8u_A 82 TFDF----EGFQRLCHALKHQERVIYPLFDRAR-DIAIAGAAEVGPECRVAIIEGNYLLFDAPGW--------------R 142 (208)
T ss_dssp GBCH----HHHHHHHHHHHHCSCEEEEEEETTT-TEEEEEEEEECTTCCEEEEEESSTTBCSTTG--------------G
T ss_pred hhhH----HHHHHHHHHHhcCCceecccCCccc-cCCCCCceEEcCCCcEEEECCceeccCCchh--------------H
Confidence 1111 1223333333222223334443333 5899999999998 78888888888888731 1
Q ss_pred HHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHHHHHH
Q 044602 278 KVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYFS 326 (674)
Q Consensus 278 ~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~ 326 (674)
++.+.--.+|++.++....+.+...|. +..|+ +.+++.+.+.
T Consensus 143 ~l~~~~d~~i~vd~~~~~~~~R~~~R~--~~~g~-----t~~~~~~~~~ 184 (208)
T 3c8u_A 143 DLTAIWDVSIRLEVPMADLEARLVQRW--LDHGL-----NHDAAVARAQ 184 (208)
T ss_dssp GGGGTCSEEEEECCCHHHHHHHHHHHH--HHTTC-----CHHHHHHHHH
T ss_pred HHHHhcCEEEEEeCCHHHHHHHHHHHH--HhcCC-----CHHHHHHHHH
Confidence 112222367777777655566666662 34554 6667765554
No 142
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.26 E-value=8.9e-15 Score=164.30 Aligned_cols=177 Identities=18% Similarity=0.123 Sum_probs=110.1
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEe-CChhccccEEEEccCCCCCCCCCHHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIP-YNPALKRRIGFVTQDDVLLPQLTVEET 187 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~-~~~~~~~~igyv~Q~~~l~~~lTV~e~ 187 (674)
..+++++++.+++|+.++|+|||||||||||++|+|.+ ++.+|.|.++|.+ +...-.+.++++.|........|..++
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i-~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~ 325 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFI-PPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDL 325 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGS-CTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhC-CCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHH
Confidence 45789999999999999999999999999999999988 4568999999865 321123456666665442223455555
Q ss_pred HHHHHhhcCC----CCCCHHHHH------------------HHHHHHHHHcCCC-----c----cccccccCCccCccCH
Q 044602 188 LVFAAFLRLP----GNMNRQQKY------------------ARVQMILKELGLE-----R----CRHTRVGGGFIKGISG 236 (674)
Q Consensus 188 l~~~~~~~~~----~~~~~~~~~------------------~~v~~~l~~lgL~-----~----~~~~~vg~~~~~~LSg 236 (674)
+.-..+.+.. .++...+.. ..+.++++.+... . ..+..+ .....+||
T Consensus 326 l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi--~~~~~~s~ 403 (511)
T 2oap_1 326 LRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIAL--VQTMWVRG 403 (511)
T ss_dssp HHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEE--EEEEEESS
T ss_pred HHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEE--EEEEEEeC
Confidence 4433221100 011111110 0123333433221 1 111100 11235799
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEE--EecCCchHHHhhc
Q 044602 237 GERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVIT--TIHQPSSRMFHMF 301 (674)
Q Consensus 237 GerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~--~~H~~~~~i~~~~ 301 (674)
|||||.+++. + | |+|||+.+...+++.+.++.++|+|+++ ++|+.. ++.+.|
T Consensus 404 G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~-ei~~~~ 457 (511)
T 2oap_1 404 NTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLE-KMADFL 457 (511)
T ss_dssp SCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHH-HHHHHH
T ss_pred CCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHH-HHHHHc
Confidence 9999987751 2 7 9999998887777777777666888875 889865 355555
No 143
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.25 E-value=7.1e-16 Score=152.19 Aligned_cols=151 Identities=19% Similarity=0.286 Sum_probs=87.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCC------------CCCccEEEECCEeCC---h-hccccEEEEccCCCCCCCCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRLT------------DDVKGNITYNDIPYN---P-ALKRRIGFVTQDDVLLPQLT 183 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~~------------~~~~G~I~~~g~~~~---~-~~~~~igyv~Q~~~l~~~lT 183 (674)
++|++++|+||||||||||+|+|+|.++ ++..|+ ++|.++. . .+++.+ .|+..++.. +
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~-~ 75 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHA-E 75 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEE-E
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeee-e
Confidence 5899999999999999999999998653 134565 3665432 1 233332 454444332 4
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHH----HHHHHH-HHhhCCCEEEEe
Q 044602 184 VEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERK----RTSIGY-EILVDPSLLLLD 258 (674)
Q Consensus 184 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq----Rv~iA~-aL~~~P~illLD 258 (674)
+.+|+ ++ .++ +.++++++.-. ....+. + + .|-++ ++ .++ +++.+|++++||
T Consensus 76 ~~~n~-~g--------~~~----~~i~~~~~~~~-~~~~~~--~------~-~g~~~~~~~~~-~~~~~~l~~p~~~ild 131 (198)
T 1lvg_A 76 FSGNL-YG--------TSK----EAVRAVQAMNR-ICVLDV--D------L-QGVRSIKKTDL-CPIYIFVQPPSLDVLE 131 (198)
T ss_dssp ETTEE-EE--------EEH----HHHHHHHHTTC-EEEEEC--C------H-HHHHHHTTSSC-CCEEEEEECSCHHHHH
T ss_pred ecCcc-CC--------CCH----HHHHHHHHcCC-cEEEEC--C------H-HHHHHHHhcCC-CcEEEEEeCCCHHHHH
Confidence 44444 22 122 22334443210 000010 0 0 01111 12 455 678888888999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeC
Q 044602 259 EPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISE 309 (674)
Q Consensus 259 EPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 309 (674)
|+|+++|..+...|.+.|++..++ +...|.+ ..+|+|+++++
T Consensus 132 e~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd~ 173 (198)
T 1lvg_A 132 QRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIINDD 173 (198)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECSS
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECCC
Confidence 999999999999999999887653 2334621 46899988764
No 144
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.15 E-value=1.5e-14 Score=156.97 Aligned_cols=169 Identities=17% Similarity=0.220 Sum_probs=118.2
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHHcCC-----------CCCCccEEEECCEeCCh-----hccccE---EEEccCCCC
Q 044602 118 SICPGEILALMGPSGSGKTTLLKIVGGRL-----------TDDVKGNITYNDIPYNP-----ALKRRI---GFVTQDDVL 178 (674)
Q Consensus 118 ~i~~Ge~~ailG~sGsGKSTLl~~L~G~~-----------~~~~~G~I~~~g~~~~~-----~~~~~i---gyv~Q~~~l 178 (674)
.+++|+.++|+|+||||||||+|+|+|.. ..+..|.|.++|..+.. .-++.+ .++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 55789999999999999999999999931 13568999998854321 112223 467788888
Q ss_pred CCCCCHHHHH--HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCC--CE
Q 044602 179 LPQLTVEETL--VFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDP--SL 254 (674)
Q Consensus 179 ~~~lTV~e~l--~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P--~i 254 (674)
.+..+..|++ .|...++. ++.++..++..+ +.. +..+||+. +| ++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~------------~d~il~Vvd~~~--d~~-----i~~v~~~~------------dP~~di 144 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRA------------VDAIYQVVRAFD--DAE-----IIHVEGDV------------DPIRDL 144 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTT------------CSEEEEEEECCC--TTC-----SSCCSSSS------------CHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHH------------HHHHHHHHhccc--cce-----eeeecccc------------Ccchhh
Confidence 8887776655 33332221 111111121111 121 22456543 89 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH-HhCCcEEEEEecCCchHHHhhcCEEE-EEeCC-EEEEecChhH
Q 044602 255 LLLDEPTSGLDSTSANKLIQVLQKV-AKAGRTVITTIHQPSSRMFHMFDKLL-LISEG-YPVYYGKARE 320 (674)
Q Consensus 255 llLDEPTsgLD~~~~~~i~~~L~~l-~~~g~tvi~~~H~~~~~i~~~~D~v~-~L~~G-~iv~~G~~~~ 320 (674)
+++|||+.++|+......++.++++ ++.|.|++ +|+.. ++.++||++. +|++| ++++.|+.++
T Consensus 145 ~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~-~~~~l~~~i~~~L~~G~~~~~~~~~~~ 210 (392)
T 1ni3_A 145 SIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKK-EEQAIIEKVYQYLTETKQPIRKGDWSN 210 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHH-HHHHHHHHHHHHHHTTCSCGGGSCCCH
T ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHH-HHHHHHHHHHHHhccCCceeecCCCCH
Confidence 9999999999999999999999988 66677764 99864 5789999999 99999 8888776543
No 145
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.14 E-value=2.4e-13 Score=144.87 Aligned_cols=179 Identities=19% Similarity=0.198 Sum_probs=112.8
Q ss_pred ccccceeeeEEEEeCC-------eEEEEEcCCCCcHHHHHHHHHcCCC---CCCccEEEECCEeCCh---hc-cccEEEE
Q 044602 107 DYKHILKGITGSICPG-------EILALMGPSGSGKTTLLKIVGGRLT---DDVKGNITYNDIPYNP---AL-KRRIGFV 172 (674)
Q Consensus 107 ~~~~iL~~vs~~i~~G-------e~~ailG~sGsGKSTLl~~L~G~~~---~~~~G~I~~~g~~~~~---~~-~~~igyv 172 (674)
+.+.+++++++.+++| +.++|.||||+|||||+++|+|.+. .+.+|.+..++.++.. .. ++.++++
T Consensus 29 g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~i 108 (334)
T 1in4_A 29 GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFI 108 (334)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEE
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEE
Confidence 3456889999999877 8999999999999999999999752 1246666666554422 12 4579999
Q ss_pred ccCCCCCCCCCHHHHHHHHHhhcCCCC-CCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhC
Q 044602 173 TQDDVLLPQLTVEETLVFAAFLRLPGN-MNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVD 251 (674)
Q Consensus 173 ~Q~~~l~~~lTV~e~l~~~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~ 251 (674)
.|.+.+.+ ++.|++..........- .......+.++..++.++|.. ..+.. ..||+|+|||+.++
T Consensus 109 DE~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~-----~~Ls~~l~sR~~l~------ 174 (334)
T 1in4_A 109 DEIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRS-----GLLSSPLRSRFGII------ 174 (334)
T ss_dssp ETGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESCG-----GGSCHHHHTTCSEE------
T ss_pred cchhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCCc-----ccCCHHHHHhcCce------
Confidence 99887765 78888854432211000 011122234555555566544 44444 37999999998655
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCchHHHhhcCEEEEEeCCEEEEecChhHHHHHH
Q 044602 252 PSLLLLDEPTSGLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSSRMFHMFDKLLLISEGYPVYYGKARESMEYF 325 (674)
Q Consensus 252 P~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f 325 (674)
.+||+.+..++.+.|++.++. + +.|++. .+..++++ ..|++..+....
T Consensus 175 ----------~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~~-~~~~ia~~----------~~G~~R~a~~ll 223 (334)
T 1in4_A 175 ----------LELDFYTVKELKEIIKRAASLMD-----VEIEDA-AAEMIAKR----------SRGTPRIAIRLT 223 (334)
T ss_dssp ----------EECCCCCHHHHHHHHHHHHHHTT-----CCBCHH-HHHHHHHT----------STTCHHHHHHHH
T ss_pred ----------eeCCCCCHHHHHHHHHHHHHHcC-----CCcCHH-HHHHHHHh----------cCCChHHHHHHH
Confidence 788999999999999988753 4 246643 34455543 246776665443
No 146
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.13 E-value=5.3e-13 Score=140.68 Aligned_cols=86 Identities=12% Similarity=0.164 Sum_probs=70.5
Q ss_pred ccceeeeEEEE-------------------eCCeEEEEEcCCCCcHHHHHHHHHcCCCC-CCccEEEE---CCEeCChhc
Q 044602 109 KHILKGITGSI-------------------CPGEILALMGPSGSGKTTLLKIVGGRLTD-DVKGNITY---NDIPYNPAL 165 (674)
Q Consensus 109 ~~iL~~vs~~i-------------------~~Ge~~ailG~sGsGKSTLl~~L~G~~~~-~~~G~I~~---~g~~~~~~~ 165 (674)
.++++++|+.+ ++|+++||+||||||||||+++|+|++.. +.+|+|.+ ||.......
T Consensus 48 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~~ 127 (308)
T 1sq5_A 48 LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQV 127 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHH
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcHHH
Confidence 35778888877 89999999999999999999999997641 46899999 888765444
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHHhhc
Q 044602 166 KRRIGFVTQDDVLLPQLTVEETLVFAAFLR 195 (674)
Q Consensus 166 ~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~ 195 (674)
++.+|++ |+..+++.+|+.+++.+...++
T Consensus 128 ~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~ 156 (308)
T 1sq5_A 128 LKERGLM-KKKGFPESYDMHRLVKFVSDLK 156 (308)
T ss_dssp HHHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred HHhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence 5668888 8777788899999998876543
No 147
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.12 E-value=3.2e-12 Score=134.33 Aligned_cols=106 Identities=15% Similarity=0.144 Sum_probs=69.9
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEE---CCEeCCh---hc-cccEEEEccCCC-------------
Q 044602 118 SICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITY---NDIPYNP---AL-KRRIGFVTQDDV------------- 177 (674)
Q Consensus 118 ~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~---~g~~~~~---~~-~~~igyv~Q~~~------------- 177 (674)
++.+|++++|+||||||||||+|+|+|+.. +.+|+|.+ +|+++.. .. .+.+|||+|++.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~-~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLK-LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCC-CC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhccccc-ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 455799999999999999999999999874 45899999 8987653 12 236899999974
Q ss_pred ---CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCccCccCH
Q 044602 178 ---LLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE-RCRHTRVGGGFIKGISG 236 (674)
Q Consensus 178 ---l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSg 236 (674)
+||++|+ ||+.|+. +. . ..+...+++++|+.+||+ +..+.. ++.||+
T Consensus 244 ~~~l~~~~~~-~n~~~~~-~~-~----~~e~~~~v~~~l~~~~L~~~~~~~~-----~~~lse 294 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSD-CN-H----VDEPECGVKEAVENGEIAESRYENY-----VKMFYE 294 (301)
T ss_dssp HGGGSTTSSS-CCCSSTT-CC-S----SSCSSCHHHHHHHHTSSCHHHHHHH-----HHHHHH
T ss_pred HHHHHHhccc-ccCcCCC-Cc-C----CCCCCcHHHHHHHcCCCCHHHHHHH-----HHHHHH
Confidence 5889999 9998753 11 1 122345788999999995 555544 335664
No 148
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.10 E-value=1.8e-14 Score=149.42 Aligned_cols=129 Identities=18% Similarity=0.149 Sum_probs=91.4
Q ss_pred ccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----hccccEEEEccCC-CCCCC
Q 044602 107 DYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----ALKRRIGFVTQDD-VLLPQ 181 (674)
Q Consensus 107 ~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~-~l~~~ 181 (674)
....+++++++.+++| ++|.||||||||||+++|+|... .|.|.++|.++.. ...+.+++++|+. ...|.
T Consensus 31 ~~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~---~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 31 RNPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG---LNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp HSHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT---CEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred hCHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC---CCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 3456899999999999 99999999999999999999763 2799999987642 2345678888874 45666
Q ss_pred CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 044602 182 LTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPT 261 (674)
Q Consensus 182 lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPT 261 (674)
+++.|++......+ .. .... .+.+..++. ...|||||+||+.|++++..+|++| |||+
T Consensus 106 i~~~Deid~~~~~r-------~~--~~~~------~~~~~~~~~-----l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al 163 (274)
T 2x8a_A 106 VIFFDEVDALCPRR-------SD--RETG------ASVRVVNQL-----LTEMDGLEARQQVFIMAATNRPDII--DPAI 163 (274)
T ss_dssp EEEEETCTTTCC------------------------CTTHHHHH-----HHHHHTCCSTTCEEEEEEESCGGGS--CHHH
T ss_pred eEeeehhhhhhccc-------CC--Ccch------HHHHHHHHH-----HHhhhcccccCCEEEEeecCChhhC--CHhh
Confidence 67777765432111 00 0000 012222332 3479999999999999999999985 9986
Q ss_pred C
Q 044602 262 S 262 (674)
Q Consensus 262 s 262 (674)
.
T Consensus 164 ~ 164 (274)
T 2x8a_A 164 L 164 (274)
T ss_dssp H
T ss_pred c
Confidence 4
No 149
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.09 E-value=6.7e-12 Score=131.87 Aligned_cols=118 Identities=17% Similarity=0.194 Sum_probs=68.7
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEE---CCEeCCh--hc-cccEEEEccCCCCCC----CCCHHH
Q 044602 117 GSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITY---NDIPYNP--AL-KRRIGFVTQDDVLLP----QLTVEE 186 (674)
Q Consensus 117 ~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~---~g~~~~~--~~-~~~igyv~Q~~~l~~----~lTV~e 186 (674)
+++.+|++++|+||||+|||||+|+|+|... +.+|+|.+ +|+.... .+ +..+||++|.+.+.+ .+|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~-~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG-LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC--------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc-ccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-H
Confidence 4567899999999999999999999999874 45899998 8876642 22 223799999987655 6899 8
Q ss_pred HHH--HHH------hhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHH
Q 044602 187 TLV--FAA------FLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKR 241 (674)
Q Consensus 187 ~l~--~~~------~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 241 (674)
++. |.. .++........+....++++++.++|.+...... ..++.|++||
T Consensus 246 ~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y-----~~lls~~~~~ 303 (307)
T 1t9h_A 246 ELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY-----VEFMTEIKDR 303 (307)
T ss_dssp HHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH-----HHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH-----HHHHHHHhhc
Confidence 883 331 1111111111223356889999999976433222 2577788773
No 150
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.05 E-value=1.3e-11 Score=124.36 Aligned_cols=60 Identities=18% Similarity=0.233 Sum_probs=45.3
Q ss_pred hCCCEEEEeCCCCCC--CHHHHHHHHHHHHHHH-hCCcEEEEEecCCchH-------HHhhcCEEEEEeC
Q 044602 250 VDPSLLLLDEPTSGL--DSTSANKLIQVLQKVA-KAGRTVITTIHQPSSR-------MFHMFDKLLLISE 309 (674)
Q Consensus 250 ~~P~illLDEPTsgL--D~~~~~~i~~~L~~l~-~~g~tvi~~~H~~~~~-------i~~~~D~v~~L~~ 309 (674)
.+|+++++|||++.+ |+....+.+..|.+++ +.|.|||+++|..... +.+.+|.|+.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999988 6655566666666655 4689999999986531 4577899999974
No 151
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.97 E-value=2.9e-10 Score=119.49 Aligned_cols=115 Identities=15% Similarity=0.239 Sum_probs=81.9
Q ss_pred eeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHh
Q 044602 114 GITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAF 193 (674)
Q Consensus 114 ~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~ 193 (674)
.+++..++|++++|+|||||||||+++.|++.+.+ ..|+|.+.+.+.... ...|
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~-~g~kV~lv~~D~~r~------------------~a~e------- 149 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVD-EGKSVVLAAADTFRA------------------AAIE------- 149 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEECTTCH------------------HHHH-------
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHh-cCCEEEEEccccccH------------------HHHH-------
Confidence 34556789999999999999999999999997743 367888776653210 0011
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHH---HHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 044602 194 LRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRT---SIGYEILVDPSLLLLDEPTSGLDSTSAN 270 (674)
Q Consensus 194 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv---~iA~aL~~~P~illLDEPTsgLD~~~~~ 270 (674)
....+.+.+|++. + ...|||+.+++ ++++++..+|+++++|||.. .....
T Consensus 150 --------------qL~~~~~~~gl~~-----~-----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~ 202 (306)
T 1vma_A 150 --------------QLKIWGERVGATV-----I-----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKK 202 (306)
T ss_dssp --------------HHHHHHHHHTCEE-----E-----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHH
T ss_pred --------------HHHHHHHHcCCcE-----E-----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHH
Confidence 2233445556542 1 25789999999 99999999999999999974 44556
Q ss_pred HHHHHHHHHHh
Q 044602 271 KLIQVLQKVAK 281 (674)
Q Consensus 271 ~i~~~L~~l~~ 281 (674)
.+++.|+++.+
T Consensus 203 ~l~~eL~~l~~ 213 (306)
T 1vma_A 203 NLMEELRKVHR 213 (306)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666543
No 152
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.96 E-value=8.5e-10 Score=122.33 Aligned_cols=179 Identities=12% Similarity=0.172 Sum_probs=111.3
Q ss_pred cceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCcc-EEEECCEeCCh-hcccc-EEEEccCCCCCCCCCHHH
Q 044602 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKG-NITYNDIPYNP-ALKRR-IGFVTQDDVLLPQLTVEE 186 (674)
Q Consensus 110 ~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G-~I~~~g~~~~~-~~~~~-igyv~Q~~~l~~~lTV~e 186 (674)
..|+++.+-+++|+++.|.|+||+|||||+..+++.... ..| .|.+.+.+.+. .+.++ .+...+ ... +
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~-~~g~~Vl~~s~E~s~~~l~~r~~~~~~~-------~~~-~ 261 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVAT-KTNENVAIFSLEMSAQQLVMRMLCAEGN-------INA-Q 261 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHH-HSSCCEEEEESSSCHHHHHHHHHHHHHT-------CCH-H
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH-hCCCcEEEEECCCCHHHHHHHHHHHHcC-------CCH-H
Confidence 468899888999999999999999999999999875422 123 44444333321 11110 000000 000 0
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCC
Q 044602 187 TLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEIL--VDPSLLLLDEPTSGL 264 (674)
Q Consensus 187 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~--~~P~illLDEPTsgL 264 (674)
.+ +. ..+...+ ..++.+.++.++..+..-.. ..++|.+|.+ +.++.++ .+|+++++|+++...
T Consensus 262 ~l------~~-g~l~~~~-~~~~~~a~~~l~~~~l~i~d-----~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~ 326 (454)
T 2r6a_A 262 NL------RT-GKLTPED-WGKLTMAMGSLSNAGIYIDD-----TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQ 326 (454)
T ss_dssp HH------HT-SCCCHHH-HHHHHHHHHHHHSSCEEEEC-----CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSC
T ss_pred HH------hc-CCCCHHH-HHHHHHHHHHHhcCCEEEEC-----CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhc
Confidence 11 10 1123222 33555566655433322111 1369999987 5667776 689999999999977
Q ss_pred CH--------HHHHHHHHHHHHHHhC-CcEEEEEec---------C--Cc-------hHHHhhcCEEEEEeCCEE
Q 044602 265 DS--------TSANKLIQVLQKVAKA-GRTVITTIH---------Q--PS-------SRMFHMFDKLLLISEGYP 312 (674)
Q Consensus 265 D~--------~~~~~i~~~L~~l~~~-g~tvi~~~H---------~--~~-------~~i~~~~D~v~~L~~G~i 312 (674)
++ .....+.+.|+.++++ |.+||+++| + |. ..+.+.+|.|++|++++.
T Consensus 327 ~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 327 GSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp CSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 43 2346777888888865 999999999 2 32 136778999999987653
No 153
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.92 E-value=2.2e-09 Score=112.36 Aligned_cols=118 Identities=17% Similarity=0.129 Sum_probs=83.2
Q ss_pred eeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHH
Q 044602 113 KGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAA 192 (674)
Q Consensus 113 ~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~ 192 (674)
++++++ +|++++++|+||+||||++..|+|.+.+ ..|+|.+.+.+..... ++ +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~-~~~~v~l~~~d~~~~~-----------------~~-~ql---- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG-KGRRPLLVAADTQRPA-----------------AR-EQL---- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHH-TTCCEEEEECCSSCHH-----------------HH-HHH----
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEecCCcccHh-----------------HH-HHH----
Confidence 678888 9999999999999999999999997743 4788888776643110 00 000
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCC-CCCCCHHHHHH
Q 044602 193 FLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEP-TSGLDSTSANK 271 (674)
Q Consensus 193 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEP-TsgLD~~~~~~ 271 (674)
..+.+..|++..... .+-.-.+.+|.+|+++...+++++|+||| ++++|......
T Consensus 146 -----------------~~~~~~~~l~~~~~~-------~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~ 201 (295)
T 1ls1_A 146 -----------------RLLGEKVGVPVLEVM-------DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGE 201 (295)
T ss_dssp -----------------HHHHHHHTCCEEECC-------TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHH
T ss_pred -----------------HHhcccCCeEEEEcC-------CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHH
Confidence 012233455432110 01234456789999988899999999999 99999888888
Q ss_pred HHHHHHHH
Q 044602 272 LIQVLQKV 279 (674)
Q Consensus 272 i~~~L~~l 279 (674)
+.+..+.+
T Consensus 202 l~~~~~~~ 209 (295)
T 1ls1_A 202 LARLKEVL 209 (295)
T ss_dssp HHHHHHHH
T ss_pred HHHHhhhc
Confidence 77776654
No 154
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.92 E-value=1.5e-09 Score=116.22 Aligned_cols=148 Identities=21% Similarity=0.277 Sum_probs=88.3
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcC
Q 044602 117 GSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRL 196 (674)
Q Consensus 117 ~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~ 196 (674)
+-+++|+++.|.||||||||||+..++...... .| .+.|+.-+...- +. ++
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~-g~---------------~vlyi~~E~~~~------~~--~a----- 106 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAA-GG---------------IAAFIDAEHALD------PE--YA----- 106 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT-TC---------------CEEEEESSCCCC------HH--HH-----
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhC-CC---------------eEEEEECCCCcC------HH--HH-----
Confidence 368999999999999999999988887533111 12 244444332110 00 01
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhC--CCEEEEeCCCCCC----------
Q 044602 197 PGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVD--PSLLLLDEPTSGL---------- 264 (674)
Q Consensus 197 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~--P~illLDEPTsgL---------- 264 (674)
+.+|+... +-.+- ...+. .|-+.++++++.+ |+++++||+++.+
T Consensus 107 -----------------~~lG~~~~-~l~i~----~~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~g 162 (349)
T 2zr9_A 107 -----------------KKLGVDTD-SLLVS----QPDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMG 162 (349)
T ss_dssp -----------------HHTTCCGG-GCEEE----CCSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC--
T ss_pred -----------------HHcCCCHH-HeEEe----cCCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccc
Confidence 11222110 00111 11233 3446678888765 9999999999998
Q ss_pred CH---HHHHHHHHHHHHH----HhCCcEEEEEecCCch---------------HHHhhcCEEEEEeCCEEEEecC
Q 044602 265 DS---TSANKLIQVLQKV----AKAGRTVITTIHQPSS---------------RMFHMFDKLLLISEGYPVYYGK 317 (674)
Q Consensus 265 D~---~~~~~i~~~L~~l----~~~g~tvi~~~H~~~~---------------~i~~~~D~v~~L~~G~iv~~G~ 317 (674)
|+ ..++.+.+.++++ .+.|.|||+++|.... .+...+|.++.+++++++..|+
T Consensus 163 d~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 163 DSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 33 2223445555555 3459999999996431 2567899999998887765554
No 155
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.86 E-value=1e-10 Score=130.67 Aligned_cols=164 Identities=16% Similarity=0.178 Sum_probs=101.9
Q ss_pred eeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHc-CCCCCCccEEEECCEeCCh-hccccEEEEccCCCCCCCC--CHHHHH
Q 044602 113 KGITGSICPGEILALMGPSGSGKTTLLKIVGG-RLTDDVKGNITYNDIPYNP-ALKRRIGFVTQDDVLLPQL--TVEETL 188 (674)
Q Consensus 113 ~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G-~~~~~~~G~I~~~g~~~~~-~~~~~igyv~Q~~~l~~~l--TV~e~l 188 (674)
+.+++++.++..++|.|++||||||+++.|.. ++.....|++.+.+.+.+. ++. ....+|++ +|.++.
T Consensus 158 ~pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~--------~~~~lPhl~~~Vvtd~ 229 (512)
T 2ius_A 158 EPVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELS--------VYEGIPHLLTEVVTDM 229 (512)
T ss_dssp CEEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGG--------GGTTCTTBSSSCBCSH
T ss_pred CEEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhh--------hhccCCcccceeecCH
Confidence 35788889999999999999999999998864 3333335778777766542 111 10111221 122222
Q ss_pred HHHHh-hcCCCCCCHHHHHHHHHHHHHHcCCCccccc--cccCCccCccCHHHHHHH----------HHHHHHhhCCC-E
Q 044602 189 VFAAF-LRLPGNMNRQQKYARVQMILKELGLERCRHT--RVGGGFIKGISGGERKRT----------SIGYEILVDPS-L 254 (674)
Q Consensus 189 ~~~~~-~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~--~vg~~~~~~LSgGerqRv----------~iA~aL~~~P~-i 254 (674)
..+.. ++ ...++.++| .++++..|+.+..+. .+. ..+|+||+||. .+++++...|. +
T Consensus 230 ~~a~~~L~----~~~~EmerR-~~ll~~~Gv~~i~~yn~~~~----~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~iv 300 (512)
T 2ius_A 230 KDAANALR----WCVNEMERR-YKLMSALGVRNLAGYNEKIA----EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIV 300 (512)
T ss_dssp HHHHHHHH----HHHHHHHHH-HHHHHHTTCSSHHHHHHHHH----HHHHTTCCCBCTTC---------CCBCCCCCEEE
T ss_pred HHHHHHHH----HHHHHHHHH-HHHHHHcCCccHHHHHHHHH----HHhhcCCcccccccccccchhccccccccCCcEE
Confidence 22111 11 112344444 377888888764332 121 25788888753 35566777898 7
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC----CcEEEEEecCCc
Q 044602 255 LLLDEPTSGLDSTSANKLIQVLQKVAKA----GRTVITTIHQPS 294 (674)
Q Consensus 255 llLDEPTsgLD~~~~~~i~~~L~~l~~~----g~tvi~~~H~~~ 294 (674)
+++||+++-+|.. ...+.+.+.++++. |.++|++||+|+
T Consensus 301 lvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 301 VLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 8999999988843 34566666666542 779999999997
No 156
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.86 E-value=3.5e-10 Score=110.03 Aligned_cols=139 Identities=20% Similarity=0.187 Sum_probs=75.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC----C------CccEEEECCEeCCh------hccccEEEEccCCC-CCCCCCHHH
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRLTD----D------VKGNITYNDIPYNP------ALKRRIGFVTQDDV-LLPQLTVEE 186 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~~~----~------~~G~I~~~g~~~~~------~~~~~igyv~Q~~~-l~~~lTV~e 186 (674)
.++|+|+||||||||++.++|...+ + .+|+|.++|+++.- ...+..++++|... ....++|.|
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 5899999999999999999997532 1 47899999976421 11122222222100 000011111
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHH---HcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 044602 187 TLVFAAFLRLPGNMNRQQKYARVQMILK---ELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSG 263 (674)
Q Consensus 187 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~---~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsg 263 (674)
.. .. ...+.+..+++ ...-.+..--.+++.. +|..-..+...+|++++.+|+++++| ||+
T Consensus 111 ~~------------~~-~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~--Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sa 173 (191)
T 1oix_A 111 IA------------KH-LTYENVERWLKELRDHADSNIVIMLVGNKS--DLRHLRAVPTDEARAFAEKNGLSFIE--TSA 173 (191)
T ss_dssp TT------------CH-HHHHTHHHHHHHHHHHSCTTCEEEEEEECG--GGGGGCCSCHHHHHHHHHHTTCEEEE--CCT
T ss_pred Cc------------CH-HHHHHHHHHHHHHHHhcCCCCcEEEEEECc--ccccccccCHHHHHHHHHHcCCEEEE--EeC
Confidence 10 00 00011111111 1100111111122211 23222234578899999999999999 999
Q ss_pred CCHHHHHHHHHHHHHH
Q 044602 264 LDSTSANKLIQVLQKV 279 (674)
Q Consensus 264 LD~~~~~~i~~~L~~l 279 (674)
+|..+..++.+.|.+.
T Consensus 174 ld~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 174 LDSTNVEAAFQTILTE 189 (191)
T ss_dssp TTCTTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999999988653
No 157
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.84 E-value=8e-13 Score=136.85 Aligned_cols=124 Identities=18% Similarity=0.217 Sum_probs=84.9
Q ss_pred cccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----hccccEEEEccCCC-CCCCC
Q 044602 108 YKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----ALKRRIGFVTQDDV-LLPQL 182 (674)
Q Consensus 108 ~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~-l~~~l 182 (674)
...+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.++.. ..++.+++++|+.. ..+.+
T Consensus 61 ~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~---~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 135 (278)
T 1iy2_A 61 NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 135 (278)
T ss_dssp CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT---CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC---CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcE
Confidence 346899999999999 89999999999999999999762 6899999876422 22345777888743 56677
Q ss_pred CHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCE
Q 044602 183 TVEETLVFAAFLRLPG-NMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSL 254 (674)
Q Consensus 183 TV~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~i 254 (674)
++.|++......+... .....+..+.+.+++ ..|||||+||+.+++++..+|++
T Consensus 136 ~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 136 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEEETHHHHHCC--------CHHHHHHHHHHH------------------HHHTTCCTTCCEEEEEEESCTTS
T ss_pred EehhhhHhhhcccccccCCcchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEecCCchh
Confidence 8888885432111000 000111122222222 25899999999999999999876
No 158
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.84 E-value=2.7e-09 Score=111.69 Aligned_cols=141 Identities=16% Similarity=0.218 Sum_probs=88.8
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGN 199 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~ 199 (674)
++|++++++||||+||||+++.|++.+.+ .+| +++.++.+|.. ..++.|.+...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~-~~G--------------~~V~lv~~D~~---r~~a~eqL~~~~------- 157 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISML-EKH--------------KKIAFITTDTY---RIAAVEQLKTYA------- 157 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHH-TTC--------------CCEEEEECCCS---STTHHHHHHHHH-------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHH-hcC--------------CEEEEEecCcc---cchHHHHHHHHH-------
Confidence 57999999999999999999999987632 245 35777777652 235666554322
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 044602 200 MNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKV 279 (674)
Q Consensus 200 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l 279 (674)
+..|++... ..+. +.-+.+++ .+.+|+++|+| |+|+|+.....+.++.+-+
T Consensus 158 --------------~~~gl~~~~----------~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~~l 208 (296)
T 2px0_A 158 --------------ELLQAPLEV----------CYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKETI 208 (296)
T ss_dssp --------------TTTTCCCCB----------CSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHHHS
T ss_pred --------------HhcCCCeEe----------cCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHHHH
Confidence 122332110 1122 33455555 45999999999 9999987765555544333
Q ss_pred H---hCCcEEEE-EecCCchHHHhhcCEEEEEeCCEEEEe
Q 044602 280 A---KAGRTVIT-TIHQPSSRMFHMFDKLLLISEGYPVYY 315 (674)
Q Consensus 280 ~---~~g~tvi~-~~H~~~~~i~~~~D~v~~L~~G~iv~~ 315 (674)
. ..+.++++ ++|+. .++.+.+|++..+..+.++..
T Consensus 209 ~~~~~~~~~lVl~at~~~-~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 209 PFESSIQSFLVLSATAKY-EDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp CCCTTEEEEEEEETTBCH-HHHHHHTTTTSSSCCCEEEEE
T ss_pred hhcCCCeEEEEEECCCCH-HHHHHHHHHHhcCCCCEEEEe
Confidence 2 11334444 37774 357777787666666777654
No 159
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.84 E-value=4e-11 Score=137.70 Aligned_cols=161 Identities=19% Similarity=0.184 Sum_probs=100.5
Q ss_pred ccccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCC----------
Q 044602 107 DYKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDD---------- 176 (674)
Q Consensus 107 ~~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~---------- 176 (674)
+...+++++++.+++|+.++|+||||+|||||+++|++.+.+...|.+.+++.+.+. ....+++++|..
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~-~~p~i~~~p~g~~~~~~e~~~~ 123 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDE-NMPRIKTVPACQGRRIVEKYRE 123 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCT-TSCEEEEEETTHHHHHHHHHHH
T ss_pred CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccc-cCCcEEEEecchHHHHHHHHHH
Confidence 345689999999999999999999999999999999998865544889998877643 345688888742
Q ss_pred ------------CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHH
Q 044602 177 ------------VLLPQLTVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSI 244 (674)
Q Consensus 177 ------------~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~i 244 (674)
..+..+++.+|+........+...-. +...... +.+|..+..... ..++|+|++|++..
T Consensus 124 ~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~-~~~~~~~---~L~G~~~~~~~~-----~g~~~~g~~~~i~~ 194 (604)
T 3k1j_A 124 KAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFID-ATGAHAG---ALLGDVRHDPFQ-----SGGLGTPAHERVEP 194 (604)
T ss_dssp HHHHHTCC-----------CCCEEEECCTTCSSCCEEE-CTTCCHH---HHHCEECCCCC---------CCCCGGGGEEC
T ss_pred hhccchhhhhhcccccccccccceeeccccCCCCCEEE-cCCCCHH---hcCceEEechhh-----cCCccccccccccC
Confidence 11112222222211000000000000 0000011 112211111111 13699999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 044602 245 GYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQK 278 (674)
Q Consensus 245 A~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~ 278 (674)
++....++.+|++||... |++.....+.+.|++
T Consensus 195 g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 195 GMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred ceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 999999999999999988 898888888777754
No 160
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.82 E-value=1.7e-10 Score=112.97 Aligned_cols=67 Identities=16% Similarity=0.296 Sum_probs=47.9
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHH
Q 044602 116 TGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEET 187 (674)
Q Consensus 116 s~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~ 187 (674)
|+++++|++++|+||||||||||+++|+|.. + .+.+++..... ..++.++|++|++..++.+++.++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL-A----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGA 71 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHS-S----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTC
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC-C----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCc
Confidence 5678899999999999999999999999975 3 46677655432 235578999998766655555444
No 161
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.81 E-value=1.2e-12 Score=133.35 Aligned_cols=127 Identities=19% Similarity=0.237 Sum_probs=85.4
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----hccccEEEEccCC-CCCCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----ALKRRIGFVTQDD-VLLPQLT 183 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~-~l~~~lT 183 (674)
..+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.++.. ..++.+++++|+. ...+.++
T Consensus 38 ~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~---~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 112 (254)
T 1ixz_A 38 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 112 (254)
T ss_dssp HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT---CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC---CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEE
Confidence 46899999999999 99999999999999999998762 6899998876422 2234567788874 3566677
Q ss_pred HHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 044602 184 VEETLVFAAFLRLPG-NMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEP 260 (674)
Q Consensus 184 V~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEP 260 (674)
+.|++......+... ....++..+.+.+++ ..|||||+||+.+++++..+|++ +|++
T Consensus 113 ~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~l~g~~~~~~~i~~a~t~~p~~--ld~~ 170 (254)
T 1ixz_A 113 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI--LDPA 170 (254)
T ss_dssp EEETHHHHHC---------CHHHHHHHHHHH------------------HHHHTCCTTCCEEEEEEESCGGG--SCGG
T ss_pred EehhhhhhhcccCccccccchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEccCCchh--CCHH
Confidence 888884332111000 001112222222222 25889999999999999999986 4543
No 162
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.80 E-value=9.5e-10 Score=122.02 Aligned_cols=52 Identities=15% Similarity=0.050 Sum_probs=47.4
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN 162 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~ 162 (674)
..+|+|+|+++++ |+++|+|||||||||||++|+|+++ +.+|+|.++|+++.
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~-p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI-PDLTLLNFRNTTEA 68 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC-CCTTTCCCCCTTSC
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC-CCCCEEEECCEEcc
Confidence 4589999999999 9999999999999999999999874 46999999998764
No 163
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.61 E-value=7.8e-10 Score=111.02 Aligned_cols=38 Identities=29% Similarity=0.226 Sum_probs=22.9
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHH-cCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVG-GRL 146 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~-G~~ 146 (674)
.+..+++|+++++|++++|+||||||||||+++|+ |+.
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 35789999999999999999999999999999999 976
No 164
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.54 E-value=4.6e-08 Score=104.70 Aligned_cols=69 Identities=20% Similarity=0.221 Sum_probs=43.0
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEE-EECCEeCC-hhccccEEEEccCCCCCCCCCHHH
Q 044602 117 GSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNI-TYNDIPYN-PALKRRIGFVTQDDVLLPQLTVEE 186 (674)
Q Consensus 117 ~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I-~~~g~~~~-~~~~~~igyv~Q~~~l~~~lTV~e 186 (674)
+-+++|+++.|.||||||||||+..+++.... ..|.+ ++++.... ....+++|+.+|+..+....++.+
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~~-~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~ 126 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQK-MGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQ 126 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHHH-TTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHH
Confidence 36899999999999999999999999975422 24544 55554432 222334555555433333334444
No 165
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.52 E-value=1e-07 Score=105.87 Aligned_cols=113 Identities=25% Similarity=0.370 Sum_probs=76.5
Q ss_pred cceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHH
Q 044602 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLV 189 (674)
Q Consensus 110 ~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~ 189 (674)
..++++++.+++| +.|.||+|+|||||++++++....+ -+.+++.+
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~~---f~~is~~~----------------------------- 84 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANVP---FFHISGSD----------------------------- 84 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTCC---EEEEEGGG-----------------------------
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCCC---eeeCCHHH-----------------------------
Confidence 3567778888888 8899999999999999999843111 01110000
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCC---------
Q 044602 190 FAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEP--------- 260 (674)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEP--------- 260 (674)
..+..+| .|++++|-.+++|....|.||++||+
T Consensus 85 -------------------------------~~~~~~g-------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~ 126 (476)
T 2ce7_A 85 -------------------------------FVELFVG-------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGA 126 (476)
T ss_dssp -------------------------------TTTCCTT-------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---
T ss_pred -------------------------------HHHHHhc-------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhccc
Confidence 0000111 26788888999999999999999999
Q ss_pred -CCCCCHHHHHHHHHHHHHHH----hCCcEEEEEecCCc
Q 044602 261 -TSGLDSTSANKLIQVLQKVA----KAGRTVITTIHQPS 294 (674)
Q Consensus 261 -TsgLD~~~~~~i~~~L~~l~----~~g~tvi~~~H~~~ 294 (674)
++|.|......+.++|..+- +.+..||.+||++.
T Consensus 127 ~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 127 GLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp ------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred ccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 44777777777777777664 24778999999974
No 166
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.52 E-value=3.1e-09 Score=106.85 Aligned_cols=58 Identities=19% Similarity=0.194 Sum_probs=40.8
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh------------hccccEEEEccC
Q 044602 116 TGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP------------ALKRRIGFVTQD 175 (674)
Q Consensus 116 s~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~------------~~~~~igyv~Q~ 175 (674)
++++.+ ++++|+|||||||||||++|+|.+.+ .+|+|.++|.++.. ..+..++||+|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIP-DLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSC-CTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhccccc-CCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 456666 89999999999999999999998854 58999999987621 135679999984
No 167
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.50 E-value=2.1e-08 Score=97.65 Aligned_cols=37 Identities=22% Similarity=0.238 Sum_probs=32.3
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 044602 242 TSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVA 280 (674)
Q Consensus 242 v~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~ 280 (674)
...|++++.+|+++++| ||++|.....++.+.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999998886643
No 168
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.49 E-value=1.5e-10 Score=124.95 Aligned_cols=144 Identities=17% Similarity=0.131 Sum_probs=84.0
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCC-CCCCCCHHHH
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDV-LLPQLTVEET 187 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~-l~~~lTV~e~ 187 (674)
..+|+++|+.+++|++++|.||||||||||+++|+|.. +|++..-+.+- ...+..+|+++|... ++...+...+
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~----~g~~~~~~~~~-~~~~~~lg~~~q~~~~l~dd~~~~~~ 230 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC----GGKALNVNLPL-DRLNFELGVAIDQFLVVFEDVKGTGG 230 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH----CCEEECCSSCT-TTHHHHHGGGTTCSCEEETTCCCSTT
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc----CCcEEEEeccc-hhHHHHHHHhcchhHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999843 67776522111 122224667777653 2333332221
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHH---cCCCc-cc---ccc--cc--CCccCccCHHHHHHHHHHHHHhhCCCEEE
Q 044602 188 LVFAAFLRLPGNMNRQQKYARVQMILKE---LGLER-CR---HTR--VG--GGFIKGISGGERKRTSIGYEILVDPSLLL 256 (674)
Q Consensus 188 l~~~~~~~~~~~~~~~~~~~~v~~~l~~---lgL~~-~~---~~~--vg--~~~~~~LSgGerqRv~iA~aL~~~P~ill 256 (674)
+. .+.... ........+.+.++- +.+.. .. +.. .| +.....+++|++||+..+.+++.+|++++
T Consensus 231 ~~----r~l~~~-~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLli 305 (377)
T 1svm_A 231 ES----RDLPSG-QGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKH 305 (377)
T ss_dssp TT----TTCCCC-SHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHH
T ss_pred HH----hhcccc-CcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeEE
Confidence 10 000000 010011223333331 10110 00 000 00 11234689999999998888889999887
Q ss_pred -EeCCCC
Q 044602 257 -LDEPTS 262 (674)
Q Consensus 257 -LDEPTs 262 (674)
||+|+.
T Consensus 306 yLd~~~~ 312 (377)
T 1svm_A 306 CLERSEF 312 (377)
T ss_dssp HHHTCTH
T ss_pred EEeCCHH
Confidence 999986
No 169
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.49 E-value=4.8e-09 Score=102.91 Aligned_cols=64 Identities=22% Similarity=0.172 Sum_probs=41.8
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh---hccccEEEEccCCCCC
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP---ALKRRIGFVTQDDVLL 179 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~---~~~~~igyv~Q~~~l~ 179 (674)
+..+-.+..++|++++|+||||||||||+++|++.+ |.+.++|.++.. ..+...|+++|+....
T Consensus 18 ~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~ 84 (200)
T 4eun_A 18 LYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET-----GLEFAEADAFHSPENIATMQRGIPLTDEDRW 84 (200)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHHH-----CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh-----CCeEEcccccccHHHHHHHhcCCCCCCcccc
Confidence 344444667899999999999999999999999854 889999877642 1122457777764333
No 170
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.47 E-value=1.2e-07 Score=101.96 Aligned_cols=151 Identities=21% Similarity=0.181 Sum_probs=88.7
Q ss_pred eCCeE-EEEEcCCCCcHHHHHHHHHcCCCC----------CCccEEEECCEeCChhccccEEEEccCCCCCCCCCHH---
Q 044602 120 CPGEI-LALMGPSGSGKTTLLKIVGGRLTD----------DVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVE--- 185 (674)
Q Consensus 120 ~~Ge~-~ailG~sGsGKSTLl~~L~G~~~~----------~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~--- 185 (674)
+.|-. ++|+|++|||||||+|.|+|.... +..|.|.++|.++. +....|++.|.+. ..|.
T Consensus 176 ~~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~--l~DT~G~i~~lp~----~lve~f~ 249 (364)
T 2qtf_A 176 RNNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM--LVDTVGFIRGIPP----QIVDAFF 249 (364)
T ss_dssp ---CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE--EEECCCBCSSCCG----GGHHHHH
T ss_pred hcCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE--EEeCCCchhcCCH----HHHHHHH
Confidence 34444 999999999999999999996531 35689999886542 2233455544221 1121
Q ss_pred HHHHHHHh--h--c-CC-CCCC--HHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHH----HHH-hhCC
Q 044602 186 ETLVFAAF--L--R-LP-GNMN--RQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIG----YEI-LVDP 252 (674)
Q Consensus 186 e~l~~~~~--~--~-~~-~~~~--~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA----~aL-~~~P 252 (674)
..+..... . . .. .... ..+..+.+.++++.+++.+..--.|++. +..+|+|++||+.++ +++ ..+|
T Consensus 250 ~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~~~~~~~~~~~~l~~~l~~~~~ 328 (364)
T 2qtf_A 250 VTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNK-IDKINGDLYKKLDLVEKLSKELYSPIF 328 (364)
T ss_dssp HHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEEC-GGGCCSCHHHHHHHHHHHHHHHCSCEE
T ss_pred HHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEEC-CCCCCchHHHHHHHHHHHHHHhcCCCC
Confidence 11111000 0 0 00 0111 1233345677888887755432223322 235788888988887 555 3344
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 044602 253 SLLLLDEPTSGLDSTSANKLIQVLQKVAK 281 (674)
Q Consensus 253 ~illLDEPTsgLD~~~~~~i~~~L~~l~~ 281 (674)
++ +|+|++|......+.+.|.++..
T Consensus 329 ~~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 329 DV----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp EE----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred cE----EEEECCCCcCHHHHHHHHHHHhc
Confidence 54 89999999999999999987654
No 171
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.33 E-value=8.8e-09 Score=101.02 Aligned_cols=53 Identities=23% Similarity=0.169 Sum_probs=43.6
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEE--EECCEeCCh
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNI--TYNDIPYNP 163 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I--~~~g~~~~~ 163 (674)
....+..++..++|++++|+||||||||||+++|++++. ..|.+ +++|.++..
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~--~~G~~~~~~d~d~~~~ 66 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY--QKGKLCYILDGDNVRH 66 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEHHHHTT
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCceEEEecCchhhh
Confidence 445667777778999999999999999999999999773 46887 888876543
No 172
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.30 E-value=3.4e-07 Score=97.26 Aligned_cols=129 Identities=13% Similarity=0.167 Sum_probs=84.2
Q ss_pred cceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHH
Q 044602 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLV 189 (674)
Q Consensus 110 ~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~ 189 (674)
.-|+.+.+-+.+|+++.|.|++|+|||||+.-++..... .| ..+.|+.= .++..+
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~--------~g--------~~Vl~fSl------Ems~~q--- 88 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN--------DD--------RGVAVFSL------EMSAEQ--- 88 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH--------TT--------CEEEEEES------SSCHHH---
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH--------cC--------CeEEEEeC------CCCHHH---
Confidence 357777778999999999999999999999888753211 11 22444432 123332
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 044602 190 FAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSA 269 (674)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~ 269 (674)
...++......+++.+..+ ..||.+|++|++.|...+.++++++.|+|... .
T Consensus 89 ---------------l~~Rlls~~~~v~~~~l~~--------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i 140 (338)
T 4a1f_A 89 ---------------LALRALSDLTSINMHDLES--------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----I 140 (338)
T ss_dssp ---------------HHHHHHHHHHCCCHHHHHH--------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----H
T ss_pred ---------------HHHHHHHHhhCCCHHHHhc--------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----H
Confidence 2222222222222222211 26999999999999999999999999998654 3
Q ss_pred HHHHHHHHHHHh-C-CcEEEEEec
Q 044602 270 NKLIQVLQKVAK-A-GRTVITTIH 291 (674)
Q Consensus 270 ~~i~~~L~~l~~-~-g~tvi~~~H 291 (674)
..+...++++.+ . |..+|++-|
T Consensus 141 ~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 141 EQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCEEEEec
Confidence 366666776665 3 677777743
No 173
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.29 E-value=8.4e-07 Score=104.50 Aligned_cols=72 Identities=18% Similarity=0.201 Sum_probs=57.7
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEE-ecCCchHHHhhcCEE
Q 044602 232 KGISGGERKRTSIGYEILVDPSLLLLDEPTS-GLDSTSANKLIQVLQKVAKAGRTVITT-IHQPSSRMFHMFDKL 304 (674)
Q Consensus 232 ~~LSgGerqRv~iA~aL~~~P~illLDEPTs-gLD~~~~~~i~~~L~~l~~~g~tvi~~-~H~~~~~i~~~~D~v 304 (674)
.-+|.|+.+|..++..++.+++++++|||.. +||......+++.+.+.....++++++ ||++ ..+.+++++.
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~-~~l~~~~~~~ 262 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDA-EKFQRYFNDA 262 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCC-HHHHHHTTSC
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccH-HHHHHHhcCC
Confidence 3589999999999999999999999999996 999887777777776654446777775 8875 4566777753
No 174
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.23 E-value=3.4e-07 Score=89.35 Aligned_cols=32 Identities=31% Similarity=0.338 Sum_probs=26.9
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 117 GSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 117 ~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
+++++|++++|+||||||||||+++|++.+.+
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 36789999999999999999999999998733
No 175
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.21 E-value=9.8e-08 Score=97.28 Aligned_cols=62 Identities=21% Similarity=0.234 Sum_probs=47.9
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHH---cCCCCCCccEEE--------ECCEeCCh-----hccccEEEEcc
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVG---GRLTDDVKGNIT--------YNDIPYNP-----ALKRRIGFVTQ 174 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~---G~~~~~~~G~I~--------~~g~~~~~-----~~~~~igyv~Q 174 (674)
++++.+ ++|++++|+|||||||||++++|+ |.. ..++|.|. .+|.++.. .+++.+++++|
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~-~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 94 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWR-LLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFV 94 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCE-EEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCC-cCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEe
Confidence 455544 789999999999999999999999 865 34589998 88887742 46678999997
Q ss_pred CC
Q 044602 175 DD 176 (674)
Q Consensus 175 ~~ 176 (674)
++
T Consensus 95 ~~ 96 (252)
T 4e22_A 95 SQ 96 (252)
T ss_dssp EE
T ss_pred cC
Confidence 54
No 176
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.18 E-value=1.2e-07 Score=96.70 Aligned_cols=52 Identities=33% Similarity=0.450 Sum_probs=35.7
Q ss_pred eEEEEeE-EEEEecccCcCCCCCcchhhhhhhcccccccccccceeeeEEEEeC---CeEEEEEcCCCCcHHHHHHHHHc
Q 044602 69 FLKFEDV-EYKVRINKAASDSNPVKSVVSKVASQLSLDKDYKHILKGITGSICP---GEILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 69 ~l~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~---Ge~~ailG~sGsGKSTLl~~L~G 144 (674)
.++++|+ +++|. +.+++|+|+|+++++ |+.++|+|++||||||+.++|++
T Consensus 17 ~l~~~~~~~~~~~--------------------------~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 17 LLETGSLLHSPFD--------------------------EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp -----------------------------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred ceEEcceeeEEec--------------------------CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 5899999 88662 125699999999999 99999999999999999999998
Q ss_pred CC
Q 044602 145 RL 146 (674)
Q Consensus 145 ~~ 146 (674)
.+
T Consensus 71 ~l 72 (250)
T 3nwj_A 71 SL 72 (250)
T ss_dssp HH
T ss_pred hc
Confidence 55
No 177
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.18 E-value=5.9e-07 Score=86.09 Aligned_cols=35 Identities=26% Similarity=0.341 Sum_probs=32.1
Q ss_pred eeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 113 KGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 113 ~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
+++++.+.+| +++|+||||||||||+++|.+.+.+
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 7899999999 9999999999999999999987643
No 178
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.18 E-value=5.8e-09 Score=116.58 Aligned_cols=129 Identities=18% Similarity=0.200 Sum_probs=85.8
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh----hccccEEEEccCCC-CCCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP----ALKRRIGFVTQDDV-LLPQLT 183 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~-l~~~lT 183 (674)
..+++++++.+++| ++|+||||+|||||+++|++... .+.|.++|.++.. ...+.+..++|... ..|.+.
T Consensus 53 ~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~---~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il 127 (499)
T 2dhr_A 53 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 127 (499)
T ss_dssp GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT---CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEE
T ss_pred hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC---CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEE
Confidence 45789999999999 89999999999999999998652 6889999877532 12234556677643 445555
Q ss_pred HHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 044602 184 VEETLVFAAFLRLP-GNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTS 262 (674)
Q Consensus 184 V~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTs 262 (674)
+.|++......+.. ......+..+.+.+++. .|||||+|+..|+++...+|++ |||+..
T Consensus 128 ~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~------------------~Ldg~~~~~~viviAatn~p~~--LD~aLl 187 (499)
T 2dhr_A 128 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPALL 187 (499)
T ss_dssp EEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH------------------HGGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred EEehHHHHHHhhccCcCCCcHHHHHHHHHHHH------------------HhcccccCccEEEEEecCChhh--cCcccc
Confidence 55655322111100 00112233333444432 4778888888888899999987 898875
No 179
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.17 E-value=5.2e-08 Score=110.13 Aligned_cols=43 Identities=28% Similarity=0.387 Sum_probs=36.3
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCcc-EEE-ECCEeC
Q 044602 118 SICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKG-NIT-YNDIPY 161 (674)
Q Consensus 118 ~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G-~I~-~~g~~~ 161 (674)
.+++|++++|+|+||||||||+++|+|++.+ .+| +|. ++|.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~-~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLME-MGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHT-TCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcc-cCCceEEEECCcHH
Confidence 5789999999999999999999999998754 355 784 888654
No 180
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.17 E-value=1.7e-06 Score=92.67 Aligned_cols=61 Identities=11% Similarity=0.111 Sum_probs=49.3
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEe--cCCc
Q 044602 232 KGISGGERKRTSIGYEILVDPSLLLLD-EPTSGLDSTSANKLIQVLQKVAKAGRTVITTI--HQPS 294 (674)
Q Consensus 232 ~~LSgGerqRv~iA~aL~~~P~illLD-EPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~--H~~~ 294 (674)
..+|+||+|++. +.+...++-++++| +|++++|......+++.+++... +..+|++. ||..
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 368999999887 55656778889999 99999999998888888777644 77888888 7754
No 181
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.17 E-value=3.1e-07 Score=97.04 Aligned_cols=77 Identities=17% Similarity=0.130 Sum_probs=58.2
Q ss_pred eeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCCh--------hc-----cccEEEE-ccCCC
Q 044602 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNP--------AL-----KRRIGFV-TQDDV 177 (674)
Q Consensus 112 L~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~--------~~-----~~~igyv-~Q~~~ 177 (674)
++++|+.+++|++++|+|+||+||||++..|++.+.+ ..|+|.+.+.+... .+ +..+.++ +|...
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~-~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~ 173 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAE-LGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLN 173 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTT
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCC
Confidence 4789999999999999999999999999999997743 47899998877632 12 5578999 77654
Q ss_pred CCCCCCHHHHHH
Q 044602 178 LLPQLTVEETLV 189 (674)
Q Consensus 178 l~~~lTV~e~l~ 189 (674)
..|..++.+++.
T Consensus 174 ~~p~~~~~~~l~ 185 (320)
T 1zu4_A 174 ADPASVVFDAIK 185 (320)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 444434445443
No 182
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.15 E-value=4.6e-07 Score=87.25 Aligned_cols=38 Identities=18% Similarity=0.243 Sum_probs=30.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEEC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYN 157 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~ 157 (674)
.+|++++|+||||||||||++.|++..++...|.|...
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~t 40 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHT 40 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeecc
Confidence 36899999999999999999999997643345666543
No 183
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.14 E-value=7.1e-06 Score=87.81 Aligned_cols=158 Identities=15% Similarity=0.139 Sum_probs=82.3
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC-CCCccEEEECCEeCC----hhccccEEEEccCCC-CCCCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLT-DDVKGNITYNDIPYN----PALKRRIGFVTQDDV-LLPQL 182 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~-~~~~G~I~~~g~~~~----~~~~~~igyv~Q~~~-l~~~l 182 (674)
..+|++++++++ .++|+|++|||||||++.|+|..- +..+|.+.-....+. ..-.+..+...+.+. .+.+.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDF 100 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCH
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCH
Confidence 458999999998 899999999999999999999432 333555433222211 001123333333221 11110
Q ss_pred -CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC--------------------ccccccccCCc---cCccCHHH
Q 044602 183 -TVEETLVFAAFLRLPGNMNRQQKYARVQMILKELGLE--------------------RCRHTRVGGGF---IKGISGGE 238 (674)
Q Consensus 183 -TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--------------------~~~~~~vg~~~---~~~LSgGe 238 (674)
.+.+.+. ++.....|-. ...|++ |-.. ..+-++.+
T Consensus 101 ~~v~~~i~--------------------~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtP-G~~~~~~~~q~~~~~ 159 (360)
T 3t34_A 101 AAVRKEIQ--------------------DETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLP-GLTKVAVDGQSDSIV 159 (360)
T ss_dssp HHHHHHHH--------------------HHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECC-CBCSSCCTTCCSSHH
T ss_pred HHHHHHHH--------------------HHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECC-CCCcCCcCCCchhHH
Confidence 1111111 1111111100 011221 1000 11356788
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-cEEEEEec
Q 044602 239 RKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAG-RTVITTIH 291 (674)
Q Consensus 239 rqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g-~tvi~~~H 291 (674)
+++..+++..+.+|+++++.-..+..|..+ ....+.++.+...| +++++.+.
T Consensus 160 ~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 160 KDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp HHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred HHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 999999999999999877774334445443 44566666665555 56666665
No 184
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.10 E-value=5.8e-07 Score=86.92 Aligned_cols=26 Identities=38% Similarity=0.609 Sum_probs=24.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
|++++|+||||||||||+++|+|+++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 67899999999999999999999873
No 185
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.07 E-value=6e-07 Score=87.92 Aligned_cols=127 Identities=17% Similarity=0.232 Sum_probs=71.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHH
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNMNRQ 203 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~ 203 (674)
+++|+|||||||||+.+.|++ + |...+++-++. +... + ++ .
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-l-----g~~~id~d~~~---~~~~----~-----~~-------------------~-- 44 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-L-----GVPLVDADVVA---REVV----A-----KD-------------------S-- 44 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-T-----TCCEEEHHHHH---HHTT----C-----SS-------------------C--
T ss_pred EEEEECCCCCCHHHHHHHHHH-C-----CCcccchHHHH---HHHc----c-----CC-------------------h--
Confidence 689999999999999999997 3 33333322110 0000 0 00 0
Q ss_pred HHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 044602 204 QKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAG 283 (674)
Q Consensus 204 ~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g 283 (674)
....++.+.+|... -.+.|+.+|..++.....+|+.+.++ ++.++|.....+.+.+++. .+
T Consensus 45 ---~~~~~i~~~~g~~~------------~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~ 105 (206)
T 1jjv_A 45 ---PLLSKIVEHFGAQI------------LTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TA 105 (206)
T ss_dssp ---HHHHHHHHHHCTTC------------C------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CS
T ss_pred ---HHHHHHHHHhCHHH------------hccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CC
Confidence 12334555555321 13678889999998888887644332 3345555555555444332 35
Q ss_pred cEEEEEecCCchH-HHhhcCEEEEEe
Q 044602 284 RTVITTIHQPSSR-MFHMFDKLLLIS 308 (674)
Q Consensus 284 ~tvi~~~H~~~~~-i~~~~D~v~~L~ 308 (674)
.++|+.+|...+. ....||.+++++
T Consensus 106 ~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 106 PYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp SEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred CEEEEEechhhhcCcHhhCCEEEEEE
Confidence 6888888875432 256788888874
No 186
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.04 E-value=1.5e-05 Score=85.17 Aligned_cols=44 Identities=16% Similarity=0.109 Sum_probs=35.8
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCcEEEEEecCCc
Q 044602 250 VDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK---AGRTVITTIHQPS 294 (674)
Q Consensus 250 ~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~---~g~tvi~~~H~~~ 294 (674)
.+|.+|++||+... |......+.+.+.++.. .+.++|+++|++.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45889999999876 88888888888876665 5789999999863
No 187
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.04 E-value=1.9e-06 Score=84.16 Aligned_cols=38 Identities=26% Similarity=0.142 Sum_probs=24.7
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
..+++|||+++++|++++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 56899999999999999999999999999999999755
No 188
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.94 E-value=5.1e-06 Score=91.53 Aligned_cols=96 Identities=10% Similarity=0.153 Sum_probs=61.0
Q ss_pred hCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEE-EeCCEEEEecChhH--HHHH-
Q 044602 250 VDPSLLLLDEPTSGLDS-TSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLL-ISEGYPVYYGKARE--SMEY- 324 (674)
Q Consensus 250 ~~P~illLDEPTsgLD~-~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~-L~~G~iv~~G~~~~--~~~~- 324 (674)
.+|++|++||+..-.+. .++..+...+..+.+.|+.+|+++|++..++..+.+++.- +..|.++..++++. ..+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 38999999999887765 6778888999888778999999999865432222233322 45577766665532 2232
Q ss_pred ---HHhCCCCCCCCCChhHHHHHhhc
Q 044602 325 ---FSSLGFIPEIAMNPAEFLLDLAT 347 (674)
Q Consensus 325 ---f~~~g~~~~~~~npad~~~~~~~ 347 (674)
.+..|...++ +..+++.....
T Consensus 273 ~~~~~~~~~~i~~--e~l~~la~~~~ 296 (440)
T 2z4s_A 273 RKMLEIEHGELPE--EVLNFVAENVD 296 (440)
T ss_dssp HHHHHHHTCCCCT--THHHHHHHHCC
T ss_pred HHHHHHcCCCCCH--HHHHHHHHhcC
Confidence 2334544332 44566655443
No 189
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.94 E-value=3.3e-06 Score=97.83 Aligned_cols=130 Identities=18% Similarity=0.154 Sum_probs=77.7
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC-CCccEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHH
Q 044602 116 TGSICPGEILALMGPSGSGKTTLLKIVGGRLTD-DVKGNITYNDIPYNP----ALKRRIGFVTQDDVLLPQLTVEETLVF 190 (674)
Q Consensus 116 s~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~-~~~G~I~~~g~~~~~----~~~~~igyv~Q~~~l~~~lTV~e~l~~ 190 (674)
|+.+++|+.++|+|++|+|||||++.|++.... ...|+| .+|..+.+ +.++.+++..|...++.. ++..
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~~---- 76 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHRV---- 76 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEEE----
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEEE----
Confidence 356788999999999999999999999965422 246887 56655432 234556666665433221 1111
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 044602 191 AAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSAN 270 (674)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~~ 270 (674)
...||. |. ..++ . ......-..++.++++| |+.|+|+.+..
T Consensus 77 -----------------------------nliDTp-G~---~~f~-~----~~~~~l~~ad~~ilVvD-~~~g~~~qt~~ 117 (665)
T 2dy1_A 77 -----------------------------FLLDAP-GY---GDFV-G----EIRGALEAADAALVAVS-AEAGVQVGTER 117 (665)
T ss_dssp -----------------------------EEEECC-CS---GGGH-H----HHHHHHHHCSEEEEEEE-TTTCSCHHHHH
T ss_pred -----------------------------EEEeCC-Cc---cchH-H----HHHHHHhhcCcEEEEEc-CCcccchhHHH
Confidence 112221 10 0111 1 12222335678899999 99999988763
Q ss_pred HHHHHHHHHHhCCcEEEEEecCCc
Q 044602 271 KLIQVLQKVAKAGRTVITTIHQPS 294 (674)
Q Consensus 271 ~i~~~L~~l~~~g~tvi~~~H~~~ 294 (674)
.++.+.+.+.++|++.|...
T Consensus 118 ----~~~~~~~~~ip~ilv~NKiD 137 (665)
T 2dy1_A 118 ----AWTVAERLGLPRMVVVTKLD 137 (665)
T ss_dssp ----HHHHHHHTTCCEEEEEECGG
T ss_pred ----HHHHHHHccCCEEEEecCCc
Confidence 33333345888888888864
No 190
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.93 E-value=3.2e-06 Score=83.27 Aligned_cols=28 Identities=36% Similarity=0.427 Sum_probs=26.1
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
++|++++|+||||||||||++.|++.++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999999999774
No 191
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.91 E-value=3.1e-06 Score=84.79 Aligned_cols=40 Identities=28% Similarity=0.230 Sum_probs=34.8
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeC
Q 044602 117 GSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPY 161 (674)
Q Consensus 117 ~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~ 161 (674)
.+.++|++++|.|+||||||||+++|+|. .|+|.+++.+.
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~-----~g~v~~~~~~~ 54 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY-----KNDICLLTEPV 54 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGGG-----TTTEEEECCTH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhc-----cCCeEEEecCH
Confidence 34478999999999999999999999985 58899888764
No 192
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.90 E-value=8e-06 Score=85.93 Aligned_cols=132 Identities=8% Similarity=0.154 Sum_probs=83.9
Q ss_pred cceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHH
Q 044602 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLV 189 (674)
Q Consensus 110 ~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~ 189 (674)
.-|+++.+-+++|+++.|.|++|+|||||+.-++..... .| ..+.|+.=+ ++..+..
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~--~g--------------~~vl~~slE------~s~~~l~- 112 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD--ND--------------DVVNLHSLE------MGKKENI- 112 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT--TT--------------CEEEEEESS------SCHHHHH-
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH--cC--------------CeEEEEECC------CCHHHHH-
Confidence 357777777999999999999999999999888742211 11 234554422 2333322
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 044602 190 FAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSA 269 (674)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~~ 269 (674)
.++......+.+.+..+ | ...||.+|++|+..|...+.++++++.|+|... .
T Consensus 113 -----------------~R~~~~~~~i~~~~l~~---~---~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~-----~ 164 (315)
T 3bh0_A 113 -----------------KRLIVTAGSINAQKIKA---A---RRDFASEDWGKLSMAIGEISNSNINIFDKAGQS-----V 164 (315)
T ss_dssp -----------------HHHHHHHTTCCHHHHHS---C---HHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----H
T ss_pred -----------------HHHHHHHcCCCHHHHhc---C---CCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----H
Confidence 22222211122222111 1 013999999999999999999999999998643 3
Q ss_pred HHHHHHHHHHHhC-CcE--EEEEecC
Q 044602 270 NKLIQVLQKVAKA-GRT--VITTIHQ 292 (674)
Q Consensus 270 ~~i~~~L~~l~~~-g~t--vi~~~H~ 292 (674)
..+.+.++++.++ |.. +|++-|=
T Consensus 165 ~~i~~~i~~l~~~~~~~~~lVVID~l 190 (315)
T 3bh0_A 165 NYIWSKTRQTKRKNPGKRVIVMIDYL 190 (315)
T ss_dssp HHHHHHHHHHHHTSSSCCEEEEEECG
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEeCc
Confidence 4566667776654 666 7777553
No 193
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.89 E-value=3.4e-05 Score=82.12 Aligned_cols=144 Identities=15% Similarity=0.157 Sum_probs=78.7
Q ss_pred eeeeE-EEEeCCeEEEEEcCCCCcHHHHHHHHHcCC-CCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHH
Q 044602 112 LKGIT-GSICPGEILALMGPSGSGKTTLLKIVGGRL-TDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLV 189 (674)
Q Consensus 112 L~~vs-~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~-~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~ 189 (674)
|+.+- +-+++|+++.|.||+|+|||||+..++... .+...| | ....+.|+.-+..+ ...+-..
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~g-----g------~~~~vlyi~~E~~~----~~~~l~~ 175 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGG-----Y------PGGKIIFIDTENTF----RPDRLRD 175 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTT-----B------CCCEEEEEESSSCC----CHHHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccC-----C------CCCeEEEEECCCCC----CHHHHHH
Confidence 44433 568999999999999999999999888642 121100 0 01235555444321 1222111
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHH-HHHHHHHHHHHh----hCCCEEEEeCCCCCC
Q 044602 190 FAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGG-ERKRTSIGYEIL----VDPSLLLLDEPTSGL 264 (674)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG-erqRv~iA~aL~----~~P~illLDEPTsgL 264 (674)
...... ... +++++.+-+. +..++. +.+.+..++.++ .+++++++|+.++-.
T Consensus 176 ~~~~~g----~~~-------~~~l~~l~~~------------~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~ 232 (343)
T 1v5w_A 176 IADRFN----VDH-------DAVLDNVLYA------------RAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALF 232 (343)
T ss_dssp HHHHTT----CCH-------HHHHHTEEEE------------ECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGH
T ss_pred HHHHcC----CCH-------HHHHhceeEe------------ecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHH
Confidence 111111 111 1223322111 112222 234555666666 568999999999866
Q ss_pred CHH------------HHHHHHHHHHHHHhC-CcEEEEEecCC
Q 044602 265 DST------------SANKLIQVLQKVAKA-GRTVITTIHQP 293 (674)
Q Consensus 265 D~~------------~~~~i~~~L~~l~~~-g~tvi~~~H~~ 293 (674)
+.. ...+++..|++++++ |.+||++.|-.
T Consensus 233 ~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~ 274 (343)
T 1v5w_A 233 RVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMT 274 (343)
T ss_dssp HHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-
T ss_pred HHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeece
Confidence 432 124555566666654 88999888853
No 194
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.87 E-value=9.7e-06 Score=84.71 Aligned_cols=62 Identities=13% Similarity=0.106 Sum_probs=42.2
Q ss_pred cCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHHhC-Cc--EEEEEecCCchHHHhhcCE
Q 044602 234 ISGGERKRTSIGYEIL--VDPSLLLLDEPTSGLDSTS-ANKLIQVLQKVAKA-GR--TVITTIHQPSSRMFHMFDK 303 (674)
Q Consensus 234 LSgGerqRv~iA~aL~--~~P~illLDEPTsgLD~~~-~~~i~~~L~~l~~~-g~--tvi~~~H~~~~~i~~~~D~ 303 (674)
+|+|++ .+++.+. ..|.++++ +.+|... ...+.+.++++++. |. .+.+++|+.. .+..++|.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~-~v~~l~~~ 168 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL-NVDTIAAI 168 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTT-THHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCC-CHHHHHHH
Confidence 898886 4566666 68999999 7899877 67778888888764 42 5555666533 24444443
No 195
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.85 E-value=7e-05 Score=78.96 Aligned_cols=143 Identities=21% Similarity=0.268 Sum_probs=78.9
Q ss_pred eeeeE-EEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC-CccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHH
Q 044602 112 LKGIT-GSICPGEILALMGPSGSGKTTLLKIVGGRLTDD-VKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLV 189 (674)
Q Consensus 112 L~~vs-~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~-~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~ 189 (674)
|+.+- +-+++|+++.|.||+|+|||||+..++.....+ ..| | ....+.|+.-+..+ ...+-..
T Consensus 96 LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~g-----g------~~~~vlyi~~e~~~----~~~~l~~ 160 (324)
T 2z43_A 96 LDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKG-----G------LSGKAVYIDTEGTF----RWERIEN 160 (324)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGT-----C------CSCEEEEEESSSCC----CHHHHHH
T ss_pred HHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccC-----C------CCCeEEEEECCCCC----CHHHHHH
Confidence 44443 579999999999999999999999888533111 111 0 01235555443321 1111111
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHH-HHHHHHHHHHHh---hCCCEEEEeCCCCCCC
Q 044602 190 FAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGG-ERKRTSIGYEIL---VDPSLLLLDEPTSGLD 265 (674)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG-erqRv~iA~aL~---~~P~illLDEPTsgLD 265 (674)
....+. ... +++++.+ .+. +..++. +.+.+..+++++ .+|+++++|+.++-.+
T Consensus 161 ~~~~~g----~~~-------~~~~~~l--------~~~----~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 161 MAKALG----LDI-------DNVMNNI--------YYI----RAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp HHHHTT----CCH-------HHHHHTE--------EEE----ECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred HHHHhC----CCH-------HHHhccE--------EEE----eCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 111111 111 1122211 010 123333 335677788888 5799999999998653
Q ss_pred H--------HH----HHHHHHHHHHHHhC-CcEEEEEecC
Q 044602 266 S--------TS----ANKLIQVLQKVAKA-GRTVITTIHQ 292 (674)
Q Consensus 266 ~--------~~----~~~i~~~L~~l~~~-g~tvi~~~H~ 292 (674)
. .. ..+++..|++++++ |.+||++.|-
T Consensus 218 ~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 218 AEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp HHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred hhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 2 11 24455566666654 8899988775
No 196
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.82 E-value=0.00011 Score=75.91 Aligned_cols=74 Identities=19% Similarity=0.319 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH----------HHHHHHHHHHHHh----CCcEEEEEecCCc---hHH
Q 044602 235 SGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTS----------ANKLIQVLQKVAK----AGRTVITTIHQPS---SRM 297 (674)
Q Consensus 235 SgGerqRv~iA~aL~~~P~illLDEPTsgLD~~~----------~~~i~~~L~~l~~----~g~tvi~~~H~~~---~~i 297 (674)
+++++.|..++.+...+|.+|++||+.+-++... ...++..+..... .+..+|.+|+++. ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 4577778888888888999999999987765422 2233333333221 2356777888753 344
Q ss_pred HhhcCEEEEEe
Q 044602 298 FHMFDKLLLIS 308 (674)
Q Consensus 298 ~~~~D~v~~L~ 308 (674)
.+-||+.+.+.
T Consensus 177 ~~R~~~~i~~~ 187 (297)
T 3b9p_A 177 LRRFTKRVYVS 187 (297)
T ss_dssp HHHCCEEEECC
T ss_pred HhhCCeEEEeC
Confidence 55567655443
No 197
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.77 E-value=1.2e-05 Score=78.57 Aligned_cols=46 Identities=30% Similarity=0.392 Sum_probs=36.8
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCC
Q 044602 116 TGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQ 181 (674)
Q Consensus 116 s~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~ 181 (674)
--++++|++++|+|+||||||||.+.|++.+. .+.+++||+.+++.
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~--------------------~~~~i~~D~~~~~~ 60 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP--------------------NCSVISQDDFFKPE 60 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHHHHHHTTST--------------------TEEEEEGGGGBCCG
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHhcC--------------------CcEEEeCCccccCH
Confidence 34567899999999999999999999998652 36777787766653
No 198
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.76 E-value=9.2e-06 Score=79.67 Aligned_cols=29 Identities=21% Similarity=0.340 Sum_probs=25.9
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 119 ICPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 119 i~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..+|++++|+||||||||||++.|.+..+
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34899999999999999999999998653
No 199
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.74 E-value=7.8e-06 Score=77.67 Aligned_cols=37 Identities=30% Similarity=0.300 Sum_probs=31.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPY 161 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~ 161 (674)
.+|++++|+|+|||||||+++.|++.+ |.+.+++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-----g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-----HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-----TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-----CcEEEeCccc
Confidence 468999999999999999999999853 7788877654
No 200
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.70 E-value=7.3e-05 Score=81.84 Aligned_cols=125 Identities=11% Similarity=0.111 Sum_probs=69.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCC
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGNM 200 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~ 200 (674)
++.+++++||+||||||++..|++.+.. ..++|.+-+.+.. .. ...|.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~-~G~kVllv~~D~~-----------------r~-~a~eqL------------ 144 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK-RGYKVGLVAADVY-----------------RP-AAYDQL------------ 144 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH-TTCCEEEEEECCS-----------------CH-HHHHHH------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEEecCcc-----------------ch-hHHHHH------------
Confidence 6899999999999999999999986633 2455555433311 00 112222
Q ss_pred CHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCC-CC--CCHHHHHHHHHHHH
Q 044602 201 NRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPT-SG--LDSTSANKLIQVLQ 277 (674)
Q Consensus 201 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPT-sg--LD~~~~~~i~~~L~ 277 (674)
...-+..|++-.... .+..--+--+-+++.+...+++++|+|+|- .+ .|+....++.+.++
T Consensus 145 ---------~~~~~~~gv~~~~~~-------~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~ 208 (433)
T 3kl4_A 145 ---------LQLGNQIGVQVYGEP-------NNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYD 208 (433)
T ss_dssp ---------HHHHHTTTCCEECCT-------TCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHH
T ss_pred ---------HHHHHhcCCceeecc-------ccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHH
Confidence 222233344321110 011111222334555555689999999997 34 78877777777655
Q ss_pred HHHhCCcEEEEEecC
Q 044602 278 KVAKAGRTVITTIHQ 292 (674)
Q Consensus 278 ~l~~~g~tvi~~~H~ 292 (674)
.+......+++.+|.
T Consensus 209 ~~~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 209 VLKPDDVILVIDASI 223 (433)
T ss_dssp HHCCSEEEEEEEGGG
T ss_pred hhCCcceEEEEeCcc
Confidence 553334444454544
No 201
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.67 E-value=6.8e-06 Score=87.38 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=24.2
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++..+.|.||+|+|||||++.+++..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999755
No 202
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.65 E-value=8.6e-06 Score=79.67 Aligned_cols=41 Identities=24% Similarity=0.229 Sum_probs=33.7
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEe
Q 044602 119 ICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIP 160 (674)
Q Consensus 119 i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~ 160 (674)
.++|++++|+|+||||||||++.|++.+.+ ..|.|.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~-~~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLRE-QGISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHH-TTCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhh-cCCeEEEeccC
Confidence 578999999999999999999999987632 36777766544
No 203
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.64 E-value=2.7e-06 Score=89.78 Aligned_cols=43 Identities=19% Similarity=0.241 Sum_probs=36.4
Q ss_pred ccccccceeeeEEEEeCCe------EEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 105 DKDYKHILKGITGSICPGE------ILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 105 ~~~~~~iL~~vs~~i~~Ge------~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
..+.++.|++++..+.+++ ++||.||||||||||+++|++++.
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3445667888888887777 999999999999999999998764
No 204
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.53 E-value=7.3e-06 Score=78.31 Aligned_cols=40 Identities=30% Similarity=0.273 Sum_probs=31.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCcc--EEEECCEeC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRLTDDVKG--NITYNDIPY 161 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G--~I~~~g~~~ 161 (674)
++|++++|+|++||||||+.+.|++.+.+ .| .|.++|..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~--~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC--HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh--CCCcEEEECChHH
Confidence 47999999999999999999999986532 45 666666544
No 205
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.52 E-value=5.4e-06 Score=82.10 Aligned_cols=55 Identities=24% Similarity=0.317 Sum_probs=42.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCCC--CCCccEEEE--------CCEeCCh-----hccccEEEEccCC
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGRLT--DDVKGNITY--------NDIPYNP-----ALKRRIGFVTQDD 176 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~~~--~~~~G~I~~--------~g~~~~~-----~~~~~igyv~Q~~ 176 (674)
+.+++|+|||||||||+.++|++.+. ...+|++.. +|.++.. .+++.+++++|++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence 56899999999999999999997542 234688876 6776642 3567789998864
No 206
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.50 E-value=0.00043 Score=76.13 Aligned_cols=171 Identities=13% Similarity=0.211 Sum_probs=94.5
Q ss_pred cceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHH
Q 044602 110 HILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLV 189 (674)
Q Consensus 110 ~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~ 189 (674)
.-|+.+.+-+++|+++.|.|++|+|||||+.-++...... .| ..+.|+.=+ ++..+-..
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g--------------~~vl~~slE------~~~~~l~~ 246 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALK-EG--------------VGVGIYSLE------MPAAQLTL 246 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT-TC--------------CCEEEEESS------SCHHHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CC--------------CeEEEEECC------CCHHHHHH
Confidence 3577777779999999999999999999998887533111 12 113332211 12221111
Q ss_pred H--HHhhcCC------CCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHh--hCCCEEEEeC
Q 044602 190 F--AAFLRLP------GNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEIL--VDPSLLLLDE 259 (674)
Q Consensus 190 ~--~~~~~~~------~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~--~~P~illLDE 259 (674)
- +.....+ ..++..+ ..++.+.++.+.-.+.. +-+ ..++|..+- .+.++.+. .+|+++++|.
T Consensus 247 R~~~~~~~i~~~~l~~g~l~~~~-~~~~~~a~~~l~~~~l~---i~d--~~~~s~~~l--~~~~~~l~~~~~~~lIvID~ 318 (444)
T 2q6t_A 247 RMMCSEARIDMNRVRLGQLTDRD-FSRLVDVASRLSEAPIY---IDD--TPDLTLMEV--RARARRLVSQNQVGLIIIDY 318 (444)
T ss_dssp HHHHHHTTCCTTTCCGGGCCHHH-HHHHHHHHHHHHTSCEE---EEC--CTTCBHHHH--HHHHHHHHHHSCCCEEEEEC
T ss_pred HHHHHHcCCCHHHHhCCCCCHHH-HHHHHHHHHHHhcCCEE---EEC--CCCCCHHHH--HHHHHHHHHHcCCCEEEEcC
Confidence 0 0000000 0122222 22333344433211111 111 125777665 34556665 4799999999
Q ss_pred CCCCCCH----------HHHHHHHHHHHHHHhC-CcEEEEEecCC-----------c-------hHHHhhcCEEEEEeC
Q 044602 260 PTSGLDS----------TSANKLIQVLQKVAKA-GRTVITTIHQP-----------S-------SRMFHMFDKLLLISE 309 (674)
Q Consensus 260 PTsgLD~----------~~~~~i~~~L~~l~~~-g~tvi~~~H~~-----------~-------~~i~~~~D~v~~L~~ 309 (674)
.+.-.+. .....+.+.|+.++++ |.+||+++|-. . ..+.+.+|.|+.|..
T Consensus 319 l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r 397 (444)
T 2q6t_A 319 LQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYR 397 (444)
T ss_dssp GGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEEE
T ss_pred hhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEec
Confidence 9764432 1224667778888775 89999998831 1 024567899998863
No 207
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.49 E-value=0.00033 Score=70.75 Aligned_cols=34 Identities=35% Similarity=0.673 Sum_probs=25.0
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++++++..++| +.|.||+|+|||||+++|++..
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHc
Confidence 566677666666 8899999999999999999855
No 208
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.49 E-value=2.4e-05 Score=78.34 Aligned_cols=152 Identities=14% Similarity=0.065 Sum_probs=76.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPGN 199 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~ 199 (674)
.+|+.+++.||+||||||++.++...... ..| ..+.++.+.+.+......++.+++.........
T Consensus 74 ~~g~~~~i~g~TGsGKTt~~~~~~~~~~~-~~~------------~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~-- 138 (235)
T 3llm_A 74 SQNSVVIIRGATGCGKTTQVPQFILDDFI-QND------------RAAECNIVVTQPRRISAVSVAERVAFERGEEPG-- 138 (235)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHHHHHHH-HTT------------CGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTT--
T ss_pred hcCCEEEEEeCCCCCcHHhHHHHHhcchh-hcC------------CCCceEEEEeccchHHHHHHHHHHHHHhccccC--
Confidence 57899999999999999998877531100 011 012345566655433333444444321100000
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccccccc--CCccCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHH
Q 044602 200 MNRQQKYARVQMILKELGLERCRHTRVG--GGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTS-GLDSTSANKLIQVL 276 (674)
Q Consensus 200 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg--~~~~~~LSgGerqRv~iA~aL~~~P~illLDEPTs-gLD~~~~~~i~~~L 276 (674)
...|.....+.... +..+--.+.|.-.+.. ...+.+-+++++||+-. ++|.......++.+
T Consensus 139 --------------~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i 202 (235)
T 3llm_A 139 --------------KSCGYSVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDV 202 (235)
T ss_dssp --------------SSEEEEETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHH
T ss_pred --------------ceEEEeechhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHH
Confidence 00000000000000 0001113456655553 33578999999999976 68877665555555
Q ss_pred HHHHhCCcEEEEEecCCchHHHhhcC
Q 044602 277 QKVAKAGRTVITTIHQPSSRMFHMFD 302 (674)
Q Consensus 277 ~~l~~~g~tvi~~~H~~~~~i~~~~D 302 (674)
.+...+-++++++.--+...+.++++
T Consensus 203 ~~~~~~~~~il~SAT~~~~~~~~~~~ 228 (235)
T 3llm_A 203 VQAYPEVRIVLMSATIDTSMFCEYFF 228 (235)
T ss_dssp HHHCTTSEEEEEECSSCCHHHHHHTT
T ss_pred HhhCCCCeEEEEecCCCHHHHHHHcC
Confidence 44333335666665444444445554
No 209
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.45 E-value=4.1e-05 Score=72.30 Aligned_cols=26 Identities=31% Similarity=0.544 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.|++++|+||||||||||+++|++.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46889999999999999999999866
No 210
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.44 E-value=6.8e-05 Score=69.94 Aligned_cols=30 Identities=30% Similarity=0.459 Sum_probs=25.1
Q ss_pred eeeEEEEeCCeEEEEEcCCCCcHHHHHHHHH
Q 044602 113 KGITGSICPGEILALMGPSGSGKTTLLKIVG 143 (674)
Q Consensus 113 ~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~ 143 (674)
++.++++.+| +++|+|||||||||++++|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 4455666665 99999999999999999987
No 211
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.39 E-value=4.6e-05 Score=72.49 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 212
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.38 E-value=0.00019 Score=74.73 Aligned_cols=29 Identities=31% Similarity=0.574 Sum_probs=26.0
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 118 SICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 118 ~i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++++..+.|.||+|+|||||+++|++..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 45788899999999999999999999854
No 213
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.37 E-value=9.8e-05 Score=87.33 Aligned_cols=30 Identities=30% Similarity=0.491 Sum_probs=27.6
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 117 GSICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 117 ~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+.+++|+.++|.||||+|||||+++|+|.+
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 357899999999999999999999999976
No 214
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.36 E-value=0.0008 Score=67.14 Aligned_cols=43 Identities=14% Similarity=0.191 Sum_probs=29.5
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCcEEEEEecC
Q 044602 250 VDPSLLLLDEPTSGLDSTSANKLIQVLQKVAK--AGRTVITTIHQ 292 (674)
Q Consensus 250 ~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~--~g~tvi~~~H~ 292 (674)
.+|+++++..+.+.++......+...++.+.. ...++|+.+|-
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~ 155 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRK 155 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECG
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCC
Confidence 47899999999888888666555555443322 13588888884
No 215
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.30 E-value=1.4e-05 Score=85.10 Aligned_cols=52 Identities=21% Similarity=0.238 Sum_probs=42.1
Q ss_pred cccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEe
Q 044602 108 YKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIP 160 (674)
Q Consensus 108 ~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~ 160 (674)
.+.+++++++.+++|.+++|+|++|+|||||++.|++.+.+ ..|+|.+-+.+
T Consensus 42 ~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~-~~~~v~v~~~d 93 (341)
T 2p67_A 42 STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIR-EGLKVAVIAVD 93 (341)
T ss_dssp HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHH-TTCCEEEEEEC
T ss_pred HHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHh-cCCeEEEEeec
Confidence 35688999999999999999999999999999999986632 35666554443
No 216
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.29 E-value=0.00068 Score=72.41 Aligned_cols=77 Identities=14% Similarity=0.054 Sum_probs=47.1
Q ss_pred HHHHHHHHHh--hCCCEEEEeCCCCCCCHH-------------HHHHHHHHHHHH---Hh-CCcEEEEEecCCch-----
Q 044602 240 KRTSIGYEIL--VDPSLLLLDEPTSGLDST-------------SANKLIQVLQKV---AK-AGRTVITTIHQPSS----- 295 (674)
Q Consensus 240 qRv~iA~aL~--~~P~illLDEPTsgLD~~-------------~~~~i~~~L~~l---~~-~g~tvi~~~H~~~~----- 295 (674)
+-+.+++.++ .+|+++++|+++.-.... .++.+.+.+++| ++ .|.+||++.|-...
T Consensus 128 ~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~f 207 (356)
T 1u94_A 128 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF 207 (356)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC---------
T ss_pred HHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 3455666665 579999999999866311 112344444444 33 48999988875321
Q ss_pred ----------HHHhhcCEEEEEeCCEEEEec
Q 044602 296 ----------RMFHMFDKLLLISEGYPVYYG 316 (674)
Q Consensus 296 ----------~i~~~~D~v~~L~~G~iv~~G 316 (674)
.+...+|-++.+.+.+....|
T Consensus 208 g~~~~~~gG~~l~~~advrl~l~r~~~~k~g 238 (356)
T 1u94_A 208 GNPETTTGGNALKFYASVRLDIRRIGAVKEG 238 (356)
T ss_dssp -----CTTCSHHHHHCSEEEEEEEEEEEESS
T ss_pred CCCcccCCCcceeeeccEEEEEEEeeeeccC
Confidence 345678888888776654443
No 217
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.26 E-value=0.00015 Score=71.53 Aligned_cols=45 Identities=13% Similarity=0.215 Sum_probs=31.1
Q ss_pred hCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCcE-EEEEecCCc
Q 044602 250 VDPSLLLLDEPTSGL-DSTSANKLIQVLQKVAKAGRT-VITTIHQPS 294 (674)
Q Consensus 250 ~~P~illLDEPTsgL-D~~~~~~i~~~L~~l~~~g~t-vi~~~H~~~ 294 (674)
.+|.++++||...-- +......+.+.++...+.+.. +|++++...
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~ 149 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASP 149 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCT
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCH
Confidence 568999999975432 233367788888877666655 777777543
No 218
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.24 E-value=0.00012 Score=80.21 Aligned_cols=32 Identities=22% Similarity=0.421 Sum_probs=28.1
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 044602 117 GSICPGEILALMGPSGSGKTTLLKIVGGRLTD 148 (674)
Q Consensus 117 ~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~ 148 (674)
+++.+|++++|+|||||||||||++|++...+
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 44678999999999999999999999987643
No 219
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.20 E-value=4.4e-05 Score=86.31 Aligned_cols=50 Identities=32% Similarity=0.449 Sum_probs=40.0
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEe
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIP 160 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~ 160 (674)
..+++++++.+ +|+.++|+||||+|||||+++|++.+.+ ..|+|.++|..
T Consensus 96 ~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~-~~~~i~~~~~~ 145 (543)
T 3m6a_A 96 YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGR-KFVRISLGGVR 145 (543)
T ss_dssp HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTC-EEEEECCCC--
T ss_pred HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCC-CeEEEEecccc
Confidence 34677777777 8999999999999999999999987743 47888777643
No 220
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.19 E-value=0.0006 Score=71.32 Aligned_cols=46 Identities=13% Similarity=0.195 Sum_probs=35.3
Q ss_pred hhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q 044602 249 LVDPSLLLLDEPTS-GLDSTSANKLIQVLQKVAKAGRTVITTIHQPS 294 (674)
Q Consensus 249 ~~~P~illLDEPTs-gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 294 (674)
..+|++|++||+.. .-|..++..+...+..+.+.|+.+|++++.+.
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~ 142 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHP 142 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCG
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCCh
Confidence 35799999999866 23447788888898888777878888877543
No 221
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.19 E-value=0.00011 Score=73.60 Aligned_cols=44 Identities=27% Similarity=0.300 Sum_probs=29.9
Q ss_pred ceeeeEEEEe---CCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEE
Q 044602 111 ILKGITGSIC---PGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITY 156 (674)
Q Consensus 111 iL~~vs~~i~---~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~ 156 (674)
-|.++|+++. +|.+++|.|++||||||+++.|+..+. . .+++..
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~-~-~~~~~~ 58 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV-K-DYDVIM 58 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT-T-TSCEEE
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh-c-CCCcee
Confidence 3678888777 999999999999999999999998763 2 455543
No 222
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.19 E-value=0.00059 Score=68.05 Aligned_cols=53 Identities=23% Similarity=0.387 Sum_probs=42.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEec---------CCchHHHhhcCEEEEEe
Q 044602 251 DPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIH---------QPSSRMFHMFDKLLLIS 308 (674)
Q Consensus 251 ~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H---------~~~~~i~~~~D~v~~L~ 308 (674)
+|+++++||.-. |+. .+++.++.+++.|.+||++-| .++.++..++|+|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 489999999964 654 355666777777999999999 56677888999999876
No 223
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.14 E-value=0.00029 Score=77.36 Aligned_cols=67 Identities=18% Similarity=0.272 Sum_probs=38.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC-----------CCCccEEEECCEeCC----hhccccEEEEccCCCCCCCCCHHHH
Q 044602 123 EILALMGPSGSGKTTLLKIVGGRLT-----------DDVKGNITYNDIPYN----PALKRRIGFVTQDDVLLPQLTVEET 187 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G~~~-----------~~~~G~I~~~g~~~~----~~~~~~igyv~Q~~~l~~~lTV~e~ 187 (674)
-.++|+|+||+|||||+|.|+|... .+.+|.+.++|+++. ...++..++.+|....+..++..++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~ 260 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence 3799999999999999999998642 135689999998642 1234444444454444444344444
Q ss_pred HH
Q 044602 188 LV 189 (674)
Q Consensus 188 l~ 189 (674)
+.
T Consensus 261 i~ 262 (439)
T 1mky_A 261 IE 262 (439)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 224
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.13 E-value=4.2e-05 Score=81.95 Aligned_cols=33 Identities=24% Similarity=0.427 Sum_probs=31.0
Q ss_pred eeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 114 GITGSICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 114 ~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
|+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 899999999999999999999999999998643
No 225
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.12 E-value=0.0007 Score=65.53 Aligned_cols=24 Identities=42% Similarity=0.509 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 123 EILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
..+.|.||+|+|||||++.++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 678999999999999999999754
No 226
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.10 E-value=0.00046 Score=65.15 Aligned_cols=27 Identities=30% Similarity=0.553 Sum_probs=23.3
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999854
No 227
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.09 E-value=0.00012 Score=77.99 Aligned_cols=41 Identities=24% Similarity=0.357 Sum_probs=32.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPY 161 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~ 161 (674)
+++.+++|+|++|||||||+|.|+|.+.+ ..|+|.+.+.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~-~~~~v~V~~~dp 112 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTE-RGHKLSVLAVDP 112 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEECCC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhh-cCCeEEEEeecC
Confidence 56889999999999999999999986633 367777766554
No 228
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.05 E-value=0.00031 Score=68.89 Aligned_cols=31 Identities=29% Similarity=0.409 Sum_probs=25.4
Q ss_pred eeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHc
Q 044602 113 KGITGSICPGEILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 113 ~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G 144 (674)
++.++.+.+| +++|+|||||||||++++|.-
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 3455666665 999999999999999999863
No 229
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.03 E-value=0.00053 Score=75.49 Aligned_cols=34 Identities=15% Similarity=0.079 Sum_probs=29.3
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHc
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G 144 (674)
-|+.+.+-+.+|+++.|.|++|+|||||+--++.
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 4666666789999999999999999999877764
No 230
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.02 E-value=0.0015 Score=68.33 Aligned_cols=33 Identities=24% Similarity=0.378 Sum_probs=27.6
Q ss_pred eeeeE-EEEeCCeEEEEEcCCCCcHHHHHHHHHc
Q 044602 112 LKGIT-GSICPGEILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 112 L~~vs-~~i~~Ge~~ailG~sGsGKSTLl~~L~G 144 (674)
|+.+- +-+++|+++.|.||+|+|||||..-++.
T Consensus 87 LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 87 LDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44433 5689999999999999999999988874
No 231
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.01 E-value=0.0018 Score=66.01 Aligned_cols=28 Identities=43% Similarity=0.595 Sum_probs=24.0
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 119 ICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 119 i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+.++.-+.|.||+|+|||||++.++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3456679999999999999999999754
No 232
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.94 E-value=0.00058 Score=65.47 Aligned_cols=36 Identities=28% Similarity=0.396 Sum_probs=20.9
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~ 145 (674)
..+++++|+..++. .++++|++|+|||||++.+.+.
T Consensus 11 ~~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 11 RDVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 34789999998887 6789999999999999999974
No 233
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.87 E-value=0.00024 Score=69.70 Aligned_cols=41 Identities=24% Similarity=0.174 Sum_probs=33.1
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCcc--EEEECCEe
Q 044602 119 ICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKG--NITYNDIP 160 (674)
Q Consensus 119 i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G--~I~~~g~~ 160 (674)
+++|.+++|.|++||||||+.+.|++.+. +..| .+.++|..
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~-~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLV-RDRRVHAYRLDGDN 64 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHH-HHHCCCEEEECHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhc-cccCCcEEEECChH
Confidence 56899999999999999999999998763 2356 77777543
No 234
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.83 E-value=0.00048 Score=67.12 Aligned_cols=28 Identities=39% Similarity=0.506 Sum_probs=25.4
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 119 ICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 119 i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
..+|.+++|+||||||||||.+.|+..+
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4689999999999999999999999765
No 235
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.82 E-value=5.4e-06 Score=87.53 Aligned_cols=42 Identities=10% Similarity=0.176 Sum_probs=31.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q 044602 251 DPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPS 294 (674)
Q Consensus 251 ~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 294 (674)
+++++++|| ...|++.....+.+.+.+... ...+|++++++.
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchh
Confidence 567999999 778999888888888876533 455667777654
No 236
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.81 E-value=0.001 Score=68.73 Aligned_cols=25 Identities=36% Similarity=0.587 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
...+.|.||+|+||||+.+.|++.+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHH
Confidence 3689999999999999999999865
No 237
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.80 E-value=0.00053 Score=65.77 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=26.2
Q ss_pred eeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcC
Q 044602 114 GITGSICPGEILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 114 ~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~ 145 (674)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 56778888999999999999999999999965
No 238
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.79 E-value=0.00027 Score=68.40 Aligned_cols=36 Identities=28% Similarity=0.402 Sum_probs=31.3
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~ 145 (674)
..+++++|+..++++ ++++|++|+|||||++.+.+.
T Consensus 13 ~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 13 SSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 458899998888875 689999999999999999863
No 239
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.78 E-value=0.006 Score=64.85 Aligned_cols=27 Identities=33% Similarity=0.562 Sum_probs=23.1
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.+..-+.|.||+|+|||||.++++...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 345678999999999999999999644
No 240
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.74 E-value=0.00069 Score=71.81 Aligned_cols=27 Identities=33% Similarity=0.411 Sum_probs=23.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
..+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999998644
No 241
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.71 E-value=0.0051 Score=61.60 Aligned_cols=27 Identities=37% Similarity=0.426 Sum_probs=22.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
++..-+.|.||+|+|||||.+.++...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 444568899999999999999999643
No 242
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.62 E-value=0.00048 Score=75.20 Aligned_cols=47 Identities=17% Similarity=0.022 Sum_probs=39.8
Q ss_pred eeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCC
Q 044602 113 KGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYN 162 (674)
Q Consensus 113 ~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~ 162 (674)
+++++. +|++++++|+|||||||++..|++.+.+ ..|+|.+.+.+..
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~-~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG-KGRRPLLVAADTQ 137 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHT-TTCCEEEEECCSS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEeecccc
Confidence 678887 8999999999999999999999997744 4788988777653
No 243
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.60 E-value=0.0055 Score=61.69 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||+|.|.|..
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47999999999999999999854
No 244
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.59 E-value=0.00087 Score=64.93 Aligned_cols=21 Identities=29% Similarity=0.502 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 044602 124 ILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G 144 (674)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
No 245
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.58 E-value=0.011 Score=65.74 Aligned_cols=34 Identities=18% Similarity=0.123 Sum_probs=28.5
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHc
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G 144 (674)
-|+.+.+-+.+|+++.|.|++|+|||||+--++-
T Consensus 231 ~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 231 GINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp THHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 4566655699999999999999999999877763
No 246
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.58 E-value=0.00016 Score=77.46 Aligned_cols=45 Identities=24% Similarity=0.180 Sum_probs=28.8
Q ss_pred cccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCE
Q 044602 108 YKHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDI 159 (674)
Q Consensus 108 ~~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~ 159 (674)
.+.+++++++.| +|+|++|+|||||++.|.|... ...|.+..++.
T Consensus 29 ~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~-~~~~~~~~~~~ 73 (361)
T 2qag_A 29 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDL-YPERVIPGAAE 73 (361)
T ss_dssp THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC------------
T ss_pred CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCC-CCCCcccCCCc
Confidence 356788998877 9999999999999999987542 22444444443
No 247
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.53 E-value=0.0013 Score=70.56 Aligned_cols=31 Identities=29% Similarity=0.430 Sum_probs=27.4
Q ss_pred eeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHH
Q 044602 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVG 143 (674)
Q Consensus 112 L~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~ 143 (674)
+++..+++.+| +++|.|||||||||+|.+|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 46778888886 99999999999999999986
No 248
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.48 E-value=0.028 Score=60.08 Aligned_cols=27 Identities=37% Similarity=0.530 Sum_probs=24.4
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHHc
Q 044602 118 SICPGEILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 118 ~i~~Ge~~ailG~sGsGKSTLl~~L~G 144 (674)
-+++|+++.|.||+|+|||||...++.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 579999999999999999999977763
No 249
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.45 E-value=0.0003 Score=74.80 Aligned_cols=38 Identities=24% Similarity=0.349 Sum_probs=34.1
Q ss_pred ccceeeeEEEEeCCeE--EEEEcCCCCcHHHHHHHHHcCC
Q 044602 109 KHILKGITGSICPGEI--LALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~--~ailG~sGsGKSTLl~~L~G~~ 146 (674)
..+++++++.+++|+. ++|+|++||||||+.++|++.+
T Consensus 9 ~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 9 DDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3478888888999998 9999999999999999999865
No 250
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.42 E-value=0.009 Score=75.10 Aligned_cols=28 Identities=39% Similarity=0.506 Sum_probs=25.9
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHHcC
Q 044602 118 SICPGEILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 118 ~i~~Ge~~ailG~sGsGKSTLl~~L~G~ 145 (674)
-+++|+++.|.||+|+|||||+..++..
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~ 755 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAA 755 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHH
Confidence 5999999999999999999999998864
No 251
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.40 E-value=0.0016 Score=61.91 Aligned_cols=26 Identities=27% Similarity=0.493 Sum_probs=22.8
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.+|.+++|.|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999853
No 252
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.40 E-value=0.0016 Score=62.13 Aligned_cols=27 Identities=37% Similarity=0.455 Sum_probs=24.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.+|.++.|+|++||||||+.+.|+..+
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999999866
No 253
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.37 E-value=0.033 Score=58.28 Aligned_cols=28 Identities=36% Similarity=0.514 Sum_probs=23.8
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 119 ICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 119 i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
..+..-+.|.||+|+|||||.+.++...
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 3456678999999999999999999754
No 254
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.37 E-value=0.0018 Score=60.38 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.++|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
No 255
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.31 E-value=0.0015 Score=63.19 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
..+++|.|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999754
No 256
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.30 E-value=0.0004 Score=72.31 Aligned_cols=47 Identities=15% Similarity=0.089 Sum_probs=37.2
Q ss_pred ee-eEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeC
Q 044602 113 KG-ITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPY 161 (674)
Q Consensus 113 ~~-vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~ 161 (674)
++ ++++.+ |++++++|++|+||||++..|++.+.. ..|+|.+.+.+.
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~-~g~~v~l~~~D~ 136 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKK-KGFKVGLVGADV 136 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHH-TTCCEEEEECCC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEecCC
Confidence 45 777766 999999999999999999999987643 356777665553
No 257
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.30 E-value=0.00086 Score=67.82 Aligned_cols=47 Identities=23% Similarity=0.305 Sum_probs=35.6
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeC
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPY 161 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~ 161 (674)
++++.+ ..+++.++.|+|+|||||||+.+.|+..+. .|.+.++|..+
T Consensus 22 ~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~---~~~~~~~~D~~ 68 (253)
T 2p5t_B 22 LTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ---GNIVIIDGDSF 68 (253)
T ss_dssp HHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTT---TCCEEECGGGG
T ss_pred HHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcC---CCcEEEecHHH
Confidence 444444 567789999999999999999999998652 25567776543
No 258
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.27 E-value=0.0018 Score=61.94 Aligned_cols=37 Identities=38% Similarity=0.324 Sum_probs=27.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCC--CCccEEEECCE
Q 044602 123 EILALMGPSGSGKTTLLKIVGGRLTD--DVKGNITYNDI 159 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G~~~~--~~~G~I~~~g~ 159 (674)
.+++|+|+||||||||++.|.+.+.. ..-|.|..++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 57899999999999999999976421 12366665543
No 259
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.25 E-value=0.00051 Score=72.47 Aligned_cols=40 Identities=20% Similarity=0.468 Sum_probs=35.4
Q ss_pred cccceeeeEEEEeCCeE--EEEEcCCCCcHHHHHHHHHcCCC
Q 044602 108 YKHILKGITGSICPGEI--LALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 108 ~~~iL~~vs~~i~~Ge~--~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
...+++.++..++.|++ +.+.||+|+||||+++++++.+.
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 35688888999999998 99999999999999999998653
No 260
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.24 E-value=0.0024 Score=60.16 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
|.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999999765
No 261
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.22 E-value=0.0017 Score=70.11 Aligned_cols=44 Identities=16% Similarity=0.301 Sum_probs=33.1
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC----------CCCCccEEEECCE
Q 044602 116 TGSICPGEILALMGPSGSGKTTLLKIVGGRL----------TDDVKGNITYNDI 159 (674)
Q Consensus 116 s~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~----------~~~~~G~I~~~g~ 159 (674)
-..+..|..++|+|+||+|||||+|.|+|.. ..+..|.+.++|.
T Consensus 16 ~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 16 IGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CCCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred HhhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 3456788899999999999999999999861 1234677777653
No 262
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.21 E-value=0.0023 Score=59.64 Aligned_cols=23 Identities=26% Similarity=0.366 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+++|.|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
No 263
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.09 E-value=0.0027 Score=63.21 Aligned_cols=74 Identities=27% Similarity=0.302 Sum_probs=44.6
Q ss_pred HHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEEecCC---------------------chHHHhhcCEE
Q 044602 247 EILVDPSLLLLDEPTS-GLDSTSANKLIQVLQKVAKAGRTVITTIHQP---------------------SSRMFHMFDKL 304 (674)
Q Consensus 247 aL~~~P~illLDEPTs-gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~---------------------~~~i~~~~D~v 304 (674)
++..+|+++++||+-. ..+........+.+..+...|..++.++|-- .+.+++.||.|
T Consensus 80 ~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~~~~a~~v 159 (228)
T 2r8r_A 80 LLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWVLQEAFDL 159 (228)
T ss_dssp HHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHHHHTCSEE
T ss_pred HHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEccccccccHHHHHHHHcCCCcCCcCccHHHhhCCeE
Confidence 3446899999999764 2333222333333344455688999998821 12344566776
Q ss_pred EEEeCCEEEEecChhHHHHHHHh
Q 044602 305 LLISEGYPVYYGKARESMEYFSS 327 (674)
Q Consensus 305 ~~L~~G~iv~~G~~~~~~~~f~~ 327 (674)
.+++ =+|+++.+-++.
T Consensus 160 ~lvD-------~~p~~l~~rl~~ 175 (228)
T 2r8r_A 160 VLID-------LPPRELLERLRD 175 (228)
T ss_dssp EEBC-------CCHHHHHHHHHT
T ss_pred EEec-------CCHHHHHHHHHC
Confidence 6654 467777766554
No 264
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.08 E-value=0.0028 Score=63.14 Aligned_cols=29 Identities=31% Similarity=0.460 Sum_probs=24.6
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 118 SICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 118 ~i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.-.+|.+++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35678899999999999999999999744
No 265
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.03 E-value=0.0034 Score=59.56 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
|.+++|.|++||||||+.+.|+-.+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998644
No 266
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.02 E-value=0.0032 Score=59.72 Aligned_cols=22 Identities=45% Similarity=0.622 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.++|.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999985
No 267
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.98 E-value=0.009 Score=62.64 Aligned_cols=33 Identities=24% Similarity=0.437 Sum_probs=27.5
Q ss_pred eeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHc
Q 044602 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 112 L~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G 144 (674)
|+.+-+-+.+|..+.|.||+|+|||||...++.
T Consensus 113 LD~lLGGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 113 VAEFGGHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EEEETTEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred HHHHhCCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 333336788999999999999999999999884
No 268
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.98 E-value=0.016 Score=53.00 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=29.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCch
Q 044602 251 DPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPSS 295 (674)
Q Consensus 251 ~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 295 (674)
+..+|++||.- .|++..+..+.+.|+.. ..+..+|++|..+..
T Consensus 76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~~-~~~~~~I~~t~~~~~ 118 (145)
T 3n70_A 76 QGGTLVLSHPE-HLTREQQYHLVQLQSQE-HRPFRLIGIGDTSLV 118 (145)
T ss_dssp TTSCEEEECGG-GSCHHHHHHHHHHHHSS-SCSSCEEEEESSCHH
T ss_pred CCcEEEEcChH-HCCHHHHHHHHHHHhhc-CCCEEEEEECCcCHH
Confidence 45689999984 68888888888877332 224567777776543
No 269
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.97 E-value=0.0035 Score=62.86 Aligned_cols=25 Identities=28% Similarity=0.567 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.-+++|.||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999999643
No 270
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.96 E-value=0.0056 Score=59.44 Aligned_cols=53 Identities=23% Similarity=0.423 Sum_probs=41.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEec---------CCchHHHhhcCEEEEEe
Q 044602 251 DPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIH---------QPSSRMFHMFDKLLLIS 308 (674)
Q Consensus 251 ~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H---------~~~~~i~~~~D~v~~L~ 308 (674)
+.+++++||.-- +|+. .++.++++++.|+.||++.+ .++.++..++|.|.-|+
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 479999999654 6643 35677777778999999999 55677888999998775
No 271
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.92 E-value=0.0039 Score=59.41 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=23.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 357889999999999999999998543
No 272
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.86 E-value=0.0039 Score=63.08 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 123 EILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.+++|+||||||||||.+.|++.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368999999999999999999754
No 273
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.81 E-value=0.0045 Score=57.47 Aligned_cols=19 Identities=32% Similarity=0.704 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 044602 124 ILALMGPSGSGKTTLLKIV 142 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L 142 (674)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 274
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.80 E-value=0.0049 Score=58.49 Aligned_cols=26 Identities=23% Similarity=0.215 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
++..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999998543
No 275
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.79 E-value=0.008 Score=57.11 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999766653
No 276
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.75 E-value=0.014 Score=53.39 Aligned_cols=42 Identities=10% Similarity=0.174 Sum_probs=30.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCC
Q 044602 251 DPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQP 293 (674)
Q Consensus 251 ~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 293 (674)
++.+|++||.- .|+...+..+.+.+.+..+.+..+|++++.+
T Consensus 75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCSYA 116 (143)
T ss_dssp TTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred CCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence 35689999975 6788888888888876543456677777664
No 277
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.75 E-value=0.0054 Score=59.01 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57889999999999999999999755
No 278
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.72 E-value=0.0049 Score=59.62 Aligned_cols=23 Identities=43% Similarity=0.676 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.+.|+||||||||||++.|....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 37899999999999999987544
No 279
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.71 E-value=0.02 Score=56.38 Aligned_cols=53 Identities=17% Similarity=0.318 Sum_probs=43.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEec---------CCchHHHhhcCEEEEEe
Q 044602 251 DPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIH---------QPSSRMFHMFDKLLLIS 308 (674)
Q Consensus 251 ~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H---------~~~~~i~~~~D~v~~L~ 308 (674)
+.+++++||.-- +|.. .++.+++++..|+.||++-+ .++.++..+||.|.-|+
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 579999999966 6543 33777777778999999999 67788889999998875
No 280
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.70 E-value=0.0054 Score=58.85 Aligned_cols=23 Identities=30% Similarity=0.601 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58999999999999999999754
No 281
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.70 E-value=0.006 Score=58.89 Aligned_cols=26 Identities=27% Similarity=0.518 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999755
No 282
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.67 E-value=0.005 Score=58.26 Aligned_cols=25 Identities=36% Similarity=0.375 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcC
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~ 145 (674)
++..+.|.|++||||||+.+.|+-.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999843
No 283
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.66 E-value=0.0062 Score=59.60 Aligned_cols=24 Identities=38% Similarity=0.455 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHc
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G 144 (674)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999996
No 284
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.65 E-value=0.037 Score=57.88 Aligned_cols=26 Identities=35% Similarity=0.438 Sum_probs=21.5
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHH
Q 044602 117 GSICPGEILALMGPSGSGKTTLLKIVG 143 (674)
Q Consensus 117 ~~i~~Ge~~ailG~sGsGKSTLl~~L~ 143 (674)
+=+++| ++.|.||+|+|||||+--++
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~ 49 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMV 49 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHH
Confidence 457889 99999999999999954443
No 285
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.61 E-value=0.0065 Score=56.99 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 044602 123 EILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G 144 (674)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999985
No 286
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.57 E-value=0.054 Score=58.03 Aligned_cols=27 Identities=44% Similarity=0.674 Sum_probs=23.2
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++.-+.|.||+|+|||+|.++++...
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 345679999999999999999998654
No 287
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.56 E-value=0.0066 Score=58.78 Aligned_cols=27 Identities=30% Similarity=0.375 Sum_probs=23.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
++|.+++|.|++||||||+.+.|+-.+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999998543
No 288
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.54 E-value=0.0064 Score=58.01 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=23.3
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 357789999999999999999998543
No 289
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.52 E-value=0.0065 Score=57.27 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48899999999999999999654
No 290
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.50 E-value=0.033 Score=71.02 Aligned_cols=153 Identities=21% Similarity=0.234 Sum_probs=86.2
Q ss_pred ceeeeE--EEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 044602 111 ILKGIT--GSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETL 188 (674)
Q Consensus 111 iL~~vs--~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l 188 (674)
-|+.+- +=+++|+++.|.||+|+|||||...++..... .| ..+.|+.-+...-+ ++
T Consensus 370 ~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~--~G--------------~~vlyis~E~s~~~---~~--- 427 (2050)
T 3cmu_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR--EG--------------KTCAFIDAEHALDP---IY--- 427 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT--TT--------------CCEEEECTTSCCCH---HH---
T ss_pred HHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHh--cC--------------CeEEEEEcCCCHHH---HH---
Confidence 355544 35999999999999999999998877743211 11 12444433221100 00
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCC-
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEIL--VDPSLLLLDEPTSGLD- 265 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~--~~P~illLDEPTsgLD- 265 (674)
+ +.+|++. .+-.+- ..-+. .|-+.+++.++ .+|++++.|.-++=..
T Consensus 428 --a----------------------~~lGvd~-~~L~I~----~~~~~--e~il~~~~~lv~~~~~~lIVIDSL~al~~~ 476 (2050)
T 3cmu_A 428 --A----------------------RKLGVDI-DNLLCS----QPDTG--EQALEICDALARSGAVDVIVVDSVAALTPK 476 (2050)
T ss_dssp --H----------------------HHTTCCT-TTCEEE----CCSSH--HHHHHHHHHHHHHTCCSEEEESCGGGCCCH
T ss_pred --H----------------------HHcCCCH-HHeEEe----CCCCH--HHHHHHHHHHHHhcCCcEEEECCHHHhhcc
Confidence 1 1122210 000111 11233 23456666665 4799999999886552
Q ss_pred H------------HHHHHHHHHHHHH---Hh-CCcEEEEEecCCch---------------HHHhhcCEEEEEeCCEEEE
Q 044602 266 S------------TSANKLIQVLQKV---AK-AGRTVITTIHQPSS---------------RMFHMFDKLLLISEGYPVY 314 (674)
Q Consensus 266 ~------------~~~~~i~~~L~~l---~~-~g~tvi~~~H~~~~---------------~i~~~~D~v~~L~~G~iv~ 314 (674)
+ ..++.+.+.|++| ++ .|.+||++.|-... .+...+|-++.|++.....
T Consensus 477 ~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~g~p~~psGg~ale~~ADv~l~L~R~~~~~ 556 (2050)
T 3cmu_A 477 AEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVK 556 (2050)
T ss_dssp HHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSSCCEECSSHHHHHHHEEEEEEEEEEEEEE
T ss_pred cccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecccccccccCCCcCCCCcchhhhhCCEEEEEEeccccc
Confidence 1 1233455666666 34 58999999874211 3567889999988665443
Q ss_pred ec
Q 044602 315 YG 316 (674)
Q Consensus 315 ~G 316 (674)
.|
T Consensus 557 ~g 558 (2050)
T 3cmu_A 557 EG 558 (2050)
T ss_dssp ET
T ss_pred CC
Confidence 33
No 291
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.49 E-value=0.0034 Score=60.94 Aligned_cols=23 Identities=35% Similarity=0.710 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+++|.|++||||||+++.|+..+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999765
No 292
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.45 E-value=0.0066 Score=62.67 Aligned_cols=36 Identities=25% Similarity=0.266 Sum_probs=28.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYND 158 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g 158 (674)
..|.++.|.|||||||||+.+.|+..+ + .|.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~-~--~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET-Q--GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT-T--TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh-C--CCeEEEec
Confidence 457899999999999999999998654 2 35566665
No 293
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.44 E-value=0.0074 Score=58.45 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=23.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
++|.+++|.|++||||||+.+.|+-.+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998543
No 294
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.43 E-value=0.008 Score=57.68 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 044602 123 EILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.+++|.|++||||||+.+.|+..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 57999999999999999999963
No 295
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.38 E-value=0.0089 Score=56.73 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcC
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~ 145 (674)
+.+++|.|++||||||+.+.|+-.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999853
No 296
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.37 E-value=0.13 Score=64.82 Aligned_cols=153 Identities=21% Similarity=0.242 Sum_probs=85.7
Q ss_pred ceeeeE--EEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCccEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 044602 111 ILKGIT--GSICPGEILALMGPSGSGKTTLLKIVGGRLTDDVKGNITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETL 188 (674)
Q Consensus 111 iL~~vs--~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~~~~~~G~I~~~g~~~~~~~~~~igyv~Q~~~l~~~lTV~e~l 188 (674)
-|+.+- +=+++|+++.|.||+|+|||||.--++..... .| ..+.|+.-+...-+ +
T Consensus 370 ~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~--~G--------------~~vlyis~E~s~~~---~---- 426 (1706)
T 3cmw_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR--EG--------------KTCAFIDAEHALDP---I---- 426 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH--TT--------------CCEEEECTTSCCCH---H----
T ss_pred HHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH--hC--------------CCeEEEEccCchHH---H----
Confidence 355554 35899999999999999999998777642211 11 23555544322110 0
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCH
Q 044602 189 VFAAFLRLPGNMNRQQKYARVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEIL--VDPSLLLLDEPTSGLDS 266 (674)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~--~~P~illLDEPTsgLD~ 266 (674)
.+ +.+|++.. +-.+- ..-++.| -+.+++.++ .+|+++++|..++=...
T Consensus 427 -~a----------------------~~lGvd~~-~L~i~----~~~~~e~--~l~~l~~lv~~~~~~lVVIDSL~al~~~ 476 (1706)
T 3cmw_A 427 -YA----------------------RKLGVDID-NLLCS----QPDTGEQ--ALEICDALARSGAVDVIVVDSVAALTPK 476 (1706)
T ss_dssp -HH----------------------HHTTCCGG-GCEEE----CCSSHHH--HHHHHHHHHHHTCCSEEEESCSTTCCCH
T ss_pred -HH----------------------HHcCCCHH-HeEEc----CCCCHHH--HHHHHHHHHHhcCCCEEEECCHHHhhcc
Confidence 01 11222110 00010 0112332 334555555 47999999999876641
Q ss_pred -------------HHHHHHHHHHHHH---Hh-CCcEEEEEecCCc---------------hHHHhhcCEEEEEeCCEEEE
Q 044602 267 -------------TSANKLIQVLQKV---AK-AGRTVITTIHQPS---------------SRMFHMFDKLLLISEGYPVY 314 (674)
Q Consensus 267 -------------~~~~~i~~~L~~l---~~-~g~tvi~~~H~~~---------------~~i~~~~D~v~~L~~G~iv~ 314 (674)
...+.+.+.+++| ++ .|.+||++.|-.. ..+...+|-++.+.+.+...
T Consensus 477 ~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~~~p~gg~ale~~ADv~L~L~R~~~~~ 556 (1706)
T 3cmw_A 477 AEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVK 556 (1706)
T ss_dssp HHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEEEEEEE
T ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCCCccCCCCcceeeeCCEEEEEEeccccc
Confidence 1223444555555 33 4999999988521 24667899988887654433
Q ss_pred ec
Q 044602 315 YG 316 (674)
Q Consensus 315 ~G 316 (674)
.|
T Consensus 557 ~g 558 (1706)
T 3cmw_A 557 EG 558 (1706)
T ss_dssp ET
T ss_pred cC
Confidence 33
No 297
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.36 E-value=0.015 Score=64.63 Aligned_cols=28 Identities=32% Similarity=0.574 Sum_probs=23.3
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 119 ICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 119 i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+++..-+.|.||+|+|||+|.++|+...
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 3455568999999999999999998644
No 298
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.36 E-value=0.0079 Score=57.01 Aligned_cols=23 Identities=39% Similarity=0.439 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+++|.|++||||||+.+.|+-.+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998654
No 299
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.33 E-value=0.13 Score=56.24 Aligned_cols=26 Identities=35% Similarity=0.465 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
++.+++++|++|+||||++..|+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 56899999999999999999999655
No 300
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.29 E-value=0.0081 Score=61.14 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|||||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 301
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.21 E-value=0.008 Score=57.46 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=23.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+++.+++|.|++||||||+.+.|+..+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998643
No 302
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.19 E-value=0.011 Score=57.98 Aligned_cols=27 Identities=30% Similarity=0.474 Sum_probs=22.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
++|-.+.|+|++||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999998643
No 303
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.14 E-value=0.01 Score=56.43 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 123 EILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.+++|+|++|||||||++.|...+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 378999999999999999998755
No 304
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.10 E-value=0.016 Score=60.58 Aligned_cols=36 Identities=25% Similarity=0.269 Sum_probs=31.9
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~ 145 (674)
...+|+....+ .|.-++|+|+||+|||||...|.++
T Consensus 132 ~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 132 TTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred ceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 45789988888 7899999999999999999999864
No 305
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.04 E-value=0.011 Score=55.95 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 123 EILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
-.++|+|++|+|||||++.+.+..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999999854
No 306
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.02 E-value=0.011 Score=54.31 Aligned_cols=23 Identities=13% Similarity=0.362 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998743
No 307
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.00 E-value=0.012 Score=54.38 Aligned_cols=23 Identities=35% Similarity=0.667 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 47999999999999999999753
No 308
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.99 E-value=0.057 Score=53.84 Aligned_cols=54 Identities=17% Similarity=0.276 Sum_probs=45.1
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecC---------CchHHHhhcCEEEEEe
Q 044602 249 LVDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQ---------PSSRMFHMFDKLLLIS 308 (674)
Q Consensus 249 ~~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~---------~~~~i~~~~D~v~~L~ 308 (674)
+.+.+++++||.---.| +.+.++.+++.|+.||++-++ ++.++..+||.|.-|+
T Consensus 88 ~~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 88 ALGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp HTTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred hccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 36789999999977654 666666666689999999999 8888999999999885
No 309
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.99 E-value=0.012 Score=53.99 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999974
No 310
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.99 E-value=0.0089 Score=56.40 Aligned_cols=26 Identities=35% Similarity=0.483 Sum_probs=18.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998644
No 311
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.97 E-value=0.01 Score=54.53 Aligned_cols=23 Identities=39% Similarity=0.697 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 37899999999999999998754
No 312
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.96 E-value=0.013 Score=55.92 Aligned_cols=23 Identities=30% Similarity=0.587 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+++|.|++||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998654
No 313
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.95 E-value=0.013 Score=57.88 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=22.2
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++..++|.|++||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345789999999999999999998543
No 314
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.90 E-value=0.012 Score=53.63 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
No 315
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.88 E-value=0.013 Score=53.49 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++++|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999754
No 316
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.87 E-value=0.015 Score=55.94 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+.+++|.|++||||||+.+.|+..+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998543
No 317
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.86 E-value=0.014 Score=53.76 Aligned_cols=23 Identities=43% Similarity=0.622 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 37899999999999999998643
No 318
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.86 E-value=0.013 Score=56.39 Aligned_cols=23 Identities=39% Similarity=0.678 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999999754
No 319
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.86 E-value=0.013 Score=53.62 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++++|++|+|||||++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998743
No 320
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.85 E-value=0.012 Score=53.60 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37999999999999999998753
No 321
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=94.81 E-value=0.015 Score=59.59 Aligned_cols=23 Identities=39% Similarity=0.686 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||+|.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999853
No 322
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.80 E-value=0.013 Score=53.73 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++++|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37999999999999999999754
No 323
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.79 E-value=0.17 Score=55.06 Aligned_cols=26 Identities=42% Similarity=0.663 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+-.=+.+.||+|+|||+|.+++|+..
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 33448899999999999999999754
No 324
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.79 E-value=0.015 Score=56.61 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|.||+||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999753
No 325
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.78 E-value=0.013 Score=54.39 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 326
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.76 E-value=0.014 Score=53.72 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++++|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4799999999999999999865
No 327
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=94.75 E-value=0.022 Score=60.83 Aligned_cols=37 Identities=22% Similarity=0.299 Sum_probs=28.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCCC----------CCCccEEEECC
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGRLT----------DDVKGNITYND 158 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~~~----------~~~~G~I~~~g 158 (674)
|-.++|+|.+|+|||||+|.|+|... .+..|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 34689999999999999999998321 23457777765
No 328
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.74 E-value=0.014 Score=53.52 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998754
No 329
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.74 E-value=0.013 Score=53.84 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37899999999999999998753
No 330
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.74 E-value=0.018 Score=53.43 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcC
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.-.++|+|++|+|||||++.+.+.
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 446899999999999999999874
No 331
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.71 E-value=0.014 Score=53.34 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++++|++|+|||||++.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 332
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.71 E-value=0.017 Score=53.83 Aligned_cols=25 Identities=40% Similarity=0.515 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
-+.++|.|+.||||||+.+.|+..+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998643
No 333
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.71 E-value=0.016 Score=54.90 Aligned_cols=23 Identities=43% Similarity=0.488 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998644
No 334
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.71 E-value=0.013 Score=57.37 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.+..+.|+|++||||||+.+.|+-.+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999998543
No 335
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.70 E-value=0.015 Score=54.06 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998643
No 336
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.69 E-value=0.013 Score=55.34 Aligned_cols=22 Identities=41% Similarity=0.599 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.+.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 337
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.69 E-value=0.015 Score=54.12 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998743
No 338
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.69 E-value=0.014 Score=55.34 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.|.+.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999975
No 339
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.68 E-value=0.017 Score=55.53 Aligned_cols=25 Identities=20% Similarity=0.302 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
..+++|.|++||||||+.+.|+..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578999999999999999998543
No 340
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.66 E-value=0.01 Score=63.71 Aligned_cols=45 Identities=16% Similarity=0.200 Sum_probs=37.5
Q ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCcEEEEEecCCch
Q 044602 251 DPSLLLLDEPTSGLD---STSANKLIQVLQKVAKAGRTVITTIHQPSS 295 (674)
Q Consensus 251 ~P~illLDEPTsgLD---~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 295 (674)
.|.++++||.=.=++ +.....+.+.+++.++.|..++++||.+++
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d 309 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVID 309 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHH
Confidence 478999999988774 667778888888888889999999999865
No 341
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.65 E-value=0.015 Score=54.28 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 123 EILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998643
No 342
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.61 E-value=0.018 Score=56.16 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|.||+||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998543
No 343
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.60 E-value=0.019 Score=53.37 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998643
No 344
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.59 E-value=0.015 Score=54.03 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999875
No 345
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.57 E-value=0.019 Score=54.37 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcC
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~ 145 (674)
..+++|.|++||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999853
No 346
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.57 E-value=0.026 Score=59.46 Aligned_cols=26 Identities=31% Similarity=0.565 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
++.+++|+||+|||||||...|+..+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 56799999999999999999999755
No 347
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.56 E-value=0.017 Score=54.48 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58999999999999999999754
No 348
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.56 E-value=0.02 Score=57.92 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcC
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~ 145 (674)
++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999864
No 349
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.55 E-value=0.015 Score=55.00 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 123 EILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998543
No 350
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.54 E-value=0.017 Score=52.97 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 351
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.51 E-value=0.016 Score=54.41 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 37899999999999999999753
No 352
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.50 E-value=0.017 Score=54.08 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998753
No 353
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.49 E-value=0.017 Score=54.53 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.|.+..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999999853
No 354
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.47 E-value=0.02 Score=53.21 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.+.+.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3799999999999999999874
No 355
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.47 E-value=0.19 Score=54.84 Aligned_cols=71 Identities=20% Similarity=0.365 Sum_probs=43.2
Q ss_pred HHHHHhhCCCEEEEeCCCCC----------CCHHHHHHHHHHHHHHHh----CCcEEEEEecCCchHHHhhcCEEEEEeC
Q 044602 244 IGYEILVDPSLLLLDEPTSG----------LDSTSANKLIQVLQKVAK----AGRTVITTIHQPSSRMFHMFDKLLLISE 309 (674)
Q Consensus 244 iA~aL~~~P~illLDEPTsg----------LD~~~~~~i~~~L~~l~~----~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 309 (674)
+..|--..|.|+|+||--+- -|......+..+|..+-. .+..||.+|++|.. .|. .++..
T Consensus 267 F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~-----LDp-AllRp 340 (437)
T 4b4t_L 267 FAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDT-----LDP-ALLRP 340 (437)
T ss_dssp HHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTS-----SCT-TTTST
T ss_pred HHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchh-----hCH-HHhCC
Confidence 34455568999999998542 244455556666766642 25688999998753 232 12455
Q ss_pred CE---EEEecChhH
Q 044602 310 GY---PVYYGKARE 320 (674)
Q Consensus 310 G~---iv~~G~~~~ 320 (674)
|| .++.+.|++
T Consensus 341 GRfD~~I~i~lPd~ 354 (437)
T 4b4t_L 341 GRLDRKVEIPLPNE 354 (437)
T ss_dssp TSEEEEECCCCCCH
T ss_pred CccceeeecCCcCH
Confidence 54 356666543
No 356
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.44 E-value=0.022 Score=57.07 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcC
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~ 145 (674)
++-.++|.||+||||||+.+.|+-.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5668999999999999999999853
No 357
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.43 E-value=0.018 Score=52.94 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++++|++|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999764
No 358
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.40 E-value=0.032 Score=54.46 Aligned_cols=37 Identities=24% Similarity=0.262 Sum_probs=29.7
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
...++..-..+ .|..++|+||+|+|||||...|+.+.
T Consensus 22 ~~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 22 RRSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CCCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred ceeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 34567765555 57899999999999999999998654
No 359
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.40 E-value=0.018 Score=54.52 Aligned_cols=23 Identities=39% Similarity=0.497 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998743
No 360
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.40 E-value=0.018 Score=54.00 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.+.+.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999874
No 361
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.37 E-value=0.034 Score=53.74 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999887643
No 362
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.36 E-value=0.02 Score=52.45 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 044602 125 LALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G~ 145 (674)
++++|++|+|||||++.+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999863
No 363
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.35 E-value=0.02 Score=53.92 Aligned_cols=24 Identities=38% Similarity=0.477 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
.++|+|++|+|||||++.+.|...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 478999999999999999998764
No 364
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.32 E-value=0.022 Score=59.20 Aligned_cols=26 Identities=35% Similarity=0.534 Sum_probs=22.3
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+.| .++|+|++|+|||||+|.|.|..
T Consensus 6 ~~g-~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 6 YSG-FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEE-EEEEECSTTSSHHHHHHHHHTSC
T ss_pred cCC-EEEEECCCCCCHHHHHHHHhCCc
Confidence 344 58999999999999999999853
No 365
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.30 E-value=0.019 Score=53.24 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.+.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 366
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.28 E-value=0.013 Score=54.75 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=20.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHc
Q 044602 122 GEILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G 144 (674)
.-.++|+|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999874
No 367
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.28 E-value=0.018 Score=58.70 Aligned_cols=23 Identities=35% Similarity=0.385 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||+|.|.|.-
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38999999999999999998743
No 368
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.26 E-value=0.021 Score=53.14 Aligned_cols=23 Identities=39% Similarity=0.449 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999998743
No 369
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.24 E-value=0.021 Score=52.87 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999999754
No 370
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.23 E-value=0.021 Score=53.27 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 48999999999999999998643
No 371
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.19 E-value=0.023 Score=57.53 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||+|.|+|.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999985
No 372
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.18 E-value=0.022 Score=52.97 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
No 373
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.17 E-value=0.022 Score=53.75 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++++|++|+|||||++.|.+..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
No 374
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.16 E-value=0.024 Score=58.89 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||+|.|.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999999853
No 375
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.16 E-value=0.025 Score=56.84 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 123 EILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998644
No 376
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.14 E-value=0.026 Score=54.64 Aligned_cols=24 Identities=25% Similarity=0.551 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcC
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.-+++|.|++||||||+.+.|+..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999853
No 377
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.08 E-value=0.025 Score=55.32 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
|-.+.|+|++||||||+.+.|+..+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998644
No 378
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=94.06 E-value=0.022 Score=60.97 Aligned_cols=21 Identities=24% Similarity=0.472 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 044602 125 LALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 125 ~ailG~sGsGKSTLl~~L~G~ 145 (674)
++|+|++|+|||||+|.|++.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999974
No 379
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.05 E-value=0.022 Score=53.33 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
No 380
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.05 E-value=0.024 Score=54.97 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999754
No 381
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.04 E-value=0.024 Score=54.16 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998754
No 382
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.04 E-value=0.025 Score=53.14 Aligned_cols=26 Identities=35% Similarity=0.437 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+.=.++++|++|+|||||++.+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468999999999999999998743
No 383
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.04 E-value=0.024 Score=54.06 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37999999999999999998643
No 384
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.03 E-value=0.024 Score=56.91 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999753
No 385
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.01 E-value=0.028 Score=55.33 Aligned_cols=22 Identities=36% Similarity=0.622 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|.|++||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999853
No 386
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.00 E-value=0.025 Score=53.46 Aligned_cols=23 Identities=35% Similarity=0.374 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
No 387
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.97 E-value=0.024 Score=53.76 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.+.+.
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 4899999999999999999874
No 388
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.96 E-value=0.033 Score=51.95 Aligned_cols=27 Identities=26% Similarity=0.425 Sum_probs=22.8
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
..+..+.|.||+|+|||||++.++..+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999998654
No 389
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.95 E-value=0.023 Score=54.50 Aligned_cols=22 Identities=45% Similarity=0.675 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999763
No 390
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.94 E-value=0.057 Score=64.12 Aligned_cols=24 Identities=38% Similarity=0.674 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 123 EILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
..+.|.||+|+|||+|.+.|+..+
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999755
No 391
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.94 E-value=0.026 Score=53.36 Aligned_cols=23 Identities=39% Similarity=0.498 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 38999999999999999998743
No 392
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.91 E-value=0.025 Score=53.75 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
No 393
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.90 E-value=0.027 Score=52.70 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999998653
No 394
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.89 E-value=0.025 Score=53.28 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.+.+.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 395
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.87 E-value=0.03 Score=53.49 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
No 396
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.86 E-value=0.033 Score=55.08 Aligned_cols=28 Identities=21% Similarity=0.432 Sum_probs=23.5
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 119 ICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 119 i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++..++.|+||+||||+|..+.|+-.+
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456789999999999999999998543
No 397
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.83 E-value=0.028 Score=52.45 Aligned_cols=22 Identities=27% Similarity=0.283 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++++|++|+|||||++.+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999863
No 398
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=93.82 E-value=0.03 Score=57.84 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.|.|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
No 399
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=93.82 E-value=0.032 Score=56.43 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999843
No 400
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=93.80 E-value=0.028 Score=53.50 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.+.+.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999874
No 401
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.80 E-value=0.029 Score=57.50 Aligned_cols=21 Identities=38% Similarity=0.580 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 044602 123 EILALMGPSGSGKTTLLKIVG 143 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~ 143 (674)
.+++|.|++||||||+.+.|+
T Consensus 76 ~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999998
No 402
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=93.79 E-value=0.03 Score=57.10 Aligned_cols=23 Identities=39% Similarity=0.616 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|.+|+|||||+|.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
No 403
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.78 E-value=0.029 Score=52.96 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.+.+.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
No 404
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.77 E-value=0.037 Score=54.48 Aligned_cols=27 Identities=37% Similarity=0.607 Sum_probs=23.7
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
-+|.+++|.|++||||||+.+.|+..+
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999998655
No 405
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.76 E-value=0.029 Score=54.49 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 044602 123 EILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G~ 145 (674)
-.++|+|++|+|||||++.|++.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47899999999999999999864
No 406
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.75 E-value=0.031 Score=54.43 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|.|++||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998533
No 407
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=93.74 E-value=0.029 Score=53.56 Aligned_cols=21 Identities=43% Similarity=0.738 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 044602 124 ILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G 144 (674)
.++|+|++|+|||||++.+.|
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999986
No 408
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.72 E-value=0.028 Score=53.86 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 58999999999999999999754
No 409
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=93.72 E-value=0.018 Score=55.91 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 123 EILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
-.++|+|++|+|||||++.|.|..
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999853
No 410
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.66 E-value=0.032 Score=52.57 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 044602 123 EILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G~ 145 (674)
=.++|+|++|+|||||++.+.+.
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999963
No 411
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.66 E-value=0.029 Score=52.33 Aligned_cols=21 Identities=24% Similarity=0.301 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 044602 124 ILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G 144 (674)
.++|+|++|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 478999999999999999984
No 412
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.65 E-value=0.039 Score=54.62 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.+..+.|+|++||||||+.+.|+-.+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999998643
No 413
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=93.65 E-value=0.032 Score=53.48 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.+.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 414
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.64 E-value=0.036 Score=56.85 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 044602 123 EILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G 144 (674)
.++.|+|++||||||+.+.|+-
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999985
No 415
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.64 E-value=0.032 Score=52.90 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998743
No 416
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.63 E-value=0.03 Score=53.11 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 47899999999999999998743
No 417
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.62 E-value=0.032 Score=51.91 Aligned_cols=22 Identities=27% Similarity=0.259 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 418
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.61 E-value=0.018 Score=59.58 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=19.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
++-+++|-||+||||||+.+.|+..+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998543
No 419
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=93.61 E-value=0.025 Score=53.46 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 420
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=93.61 E-value=0.032 Score=54.72 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.+.+.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
No 421
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.60 E-value=0.03 Score=53.72 Aligned_cols=23 Identities=39% Similarity=0.494 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998743
No 422
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.60 E-value=0.028 Score=55.94 Aligned_cols=28 Identities=36% Similarity=0.596 Sum_probs=21.6
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 119 ICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 119 i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
..+|.++.|.|++||||||+.+.|+..+
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999999998655
No 423
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.58 E-value=0.033 Score=52.50 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
No 424
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.57 E-value=0.033 Score=52.69 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.+.+.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 425
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.55 E-value=0.034 Score=52.92 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.+.+.
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 426
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.55 E-value=0.033 Score=53.46 Aligned_cols=24 Identities=33% Similarity=0.362 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 123 EILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
=.++|+|++|+|||||++.+.+..
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 358999999999999999998743
No 427
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.54 E-value=0.033 Score=52.70 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998743
No 428
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.54 E-value=0.03 Score=52.55 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.+.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999974
No 429
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.50 E-value=0.034 Score=52.71 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998753
No 430
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=93.49 E-value=0.038 Score=53.38 Aligned_cols=23 Identities=39% Similarity=0.413 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999743
No 431
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.49 E-value=0.034 Score=53.08 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 123 EILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
=.++|+|++|+|||||++.+.+..
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 358999999999999999998743
No 432
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=93.39 E-value=0.033 Score=56.88 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|.+|+|||||++.|.|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999864
No 433
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.39 E-value=0.045 Score=57.09 Aligned_cols=25 Identities=32% Similarity=0.623 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+.+++|+||+|||||||...|+-.+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4589999999999999999999654
No 434
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.39 E-value=0.042 Score=55.05 Aligned_cols=26 Identities=27% Similarity=0.524 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+|.+++|.|++||||||+.+.|+..+
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999998655
No 435
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.37 E-value=0.035 Score=53.49 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999743
No 436
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.37 E-value=0.042 Score=52.38 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 48999999999999999999865
No 437
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.34 E-value=0.04 Score=59.88 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=23.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.+.+++.|+|++||||||+.+.|+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999999999999999853
No 438
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.32 E-value=0.041 Score=58.07 Aligned_cols=24 Identities=33% Similarity=0.576 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 123 EILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.+++|.||+|||||||.+.|+..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 379999999999999999999755
No 439
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=93.31 E-value=0.042 Score=52.30 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.+.+.
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 440
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.31 E-value=0.03 Score=52.07 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++++|++|+|||||++.+.+.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999874
No 441
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.28 E-value=0.16 Score=59.44 Aligned_cols=23 Identities=30% Similarity=0.674 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.+.+.||+|+|||+|.++|+..+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999654
No 442
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=93.26 E-value=0.041 Score=53.41 Aligned_cols=22 Identities=36% Similarity=0.631 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.+.+.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 443
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.23 E-value=0.04 Score=51.36 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=22.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
..+..+.|.||+|+|||||++.++..+
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678899999999999999998654
No 444
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.23 E-value=0.041 Score=52.10 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.+.+.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4899999999999999988864
No 445
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.18 E-value=0.047 Score=53.88 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=25.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRLT 147 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~~ 147 (674)
++|.++.+.|++||||||+.+.|+..+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3689999999999999999999997663
No 446
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.18 E-value=0.038 Score=53.48 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999753
No 447
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.16 E-value=0.049 Score=53.61 Aligned_cols=26 Identities=31% Similarity=0.441 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+|.++.+.|++||||||+.+.|...+
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999999998755
No 448
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=93.13 E-value=0.028 Score=52.56 Aligned_cols=22 Identities=41% Similarity=0.489 Sum_probs=9.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999998864
No 449
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.12 E-value=0.074 Score=50.67 Aligned_cols=35 Identities=14% Similarity=0.008 Sum_probs=27.4
Q ss_pred ccceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHc
Q 044602 109 KHILKGITGSICPGEILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 109 ~~iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G 144 (674)
+..+|..-.. -.|.-++|.|+||+|||||...|..
T Consensus 4 ~~~lHas~v~-v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 4 KQTWHANFLV-IDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp CEEEESEEEE-ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred cEEEEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3456655555 4588999999999999999988874
No 450
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.10 E-value=0.043 Score=55.40 Aligned_cols=23 Identities=22% Similarity=0.459 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.|.|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999854
No 451
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.09 E-value=0.046 Score=52.68 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998643
No 452
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.08 E-value=0.04 Score=52.51 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.+.+.
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCSS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999753
No 453
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.07 E-value=0.05 Score=53.22 Aligned_cols=23 Identities=39% Similarity=0.637 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
++.|+||+||||+|..+.|+-.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999543
No 454
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=93.03 E-value=0.041 Score=52.67 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999999743
No 455
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.03 E-value=0.057 Score=53.58 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=24.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.+|.++++.|++||||||+.+.|+..+
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 358899999999999999999998654
No 456
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.01 E-value=0.19 Score=64.18 Aligned_cols=35 Identities=37% Similarity=0.436 Sum_probs=29.9
Q ss_pred eeeeEE--EEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 112 LKGITG--SICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 112 L~~vs~--~i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
|+.+.. -+++|+++.|-|++|+|||||+..++...
T Consensus 720 LD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~ 756 (2050)
T 3cmu_A 720 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 566654 69999999999999999999999888643
No 457
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.00 E-value=0.054 Score=53.80 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+|.+++|-|+.||||||+.+.|+..+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 36789999999999999999999765
No 458
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.95 E-value=0.066 Score=52.75 Aligned_cols=60 Identities=15% Similarity=0.214 Sum_probs=40.3
Q ss_pred hhCCCEEEEeCCCC----CCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCch---------HHHhhcCEEEEEe
Q 044602 249 LVDPSLLLLDEPTS----GLDSTSANKLIQVLQKVAKA-GRTVITTIHQPSS---------RMFHMFDKLLLIS 308 (674)
Q Consensus 249 ~~~P~illLDEPTs----gLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~---------~i~~~~D~v~~L~ 308 (674)
-.+|+++++|--+. .-|.....++...|++++++ |.++++++|.... .+...+|-|+.|.
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 34788999986542 12455566777788887764 9999999886422 1235688888775
No 459
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.95 E-value=0.035 Score=55.99 Aligned_cols=27 Identities=19% Similarity=0.271 Sum_probs=23.7
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+++.+++|.|+.||||||+.+.|+..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 567899999999999999999998655
No 460
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=92.92 E-value=0.05 Score=55.14 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++++|++|+|||||+|.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999854
No 461
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.90 E-value=0.053 Score=56.86 Aligned_cols=24 Identities=38% Similarity=0.605 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 123 EILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.+++|+||+|||||||.+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999755
No 462
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=92.87 E-value=0.049 Score=52.94 Aligned_cols=25 Identities=40% Similarity=0.574 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578999999999999999999754
No 463
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=92.86 E-value=0.058 Score=59.31 Aligned_cols=35 Identities=23% Similarity=0.415 Sum_probs=29.1
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+++.+ ..+-+|+..+|+|+||+|||||++.|++..
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 55555 566789999999999999999999998643
No 464
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.80 E-value=0.061 Score=51.93 Aligned_cols=43 Identities=21% Similarity=0.257 Sum_probs=30.3
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q 044602 250 VDPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPS 294 (674)
Q Consensus 250 ~~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 294 (674)
.+|.++++||.-. +|......+.+.+.+. ..+..+|++++++.
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQ 167 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChH
Confidence 3578999999865 7877777666666432 13677888888754
No 465
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.77 E-value=0.049 Score=51.55 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++++|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 466
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=92.76 E-value=0.062 Score=52.60 Aligned_cols=22 Identities=41% Similarity=0.674 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999974
No 467
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=92.64 E-value=0.027 Score=54.57 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.+.+.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998864
No 468
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=92.62 E-value=0.16 Score=56.23 Aligned_cols=71 Identities=18% Similarity=0.265 Sum_probs=53.7
Q ss_pred cCccCHHHHHHHHHH--HHHhh---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCC
Q 044602 231 IKGISGGERKRTSIG--YEILV---------------DPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQP 293 (674)
Q Consensus 231 ~~~LSgGerqRv~iA--~aL~~---------------~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 293 (674)
..+.||||+|-.-+| .+++. .=+++++||+ +-+|.......++.++++ |.-+|+++=.
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiatP~- 451 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAAPE- 451 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEESS-
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEECcc-
Confidence 457999999964333 33332 1157999999 999999999999999876 7788888755
Q ss_pred chHHHhhcCEEEEEe
Q 044602 294 SSRMFHMFDKLLLIS 308 (674)
Q Consensus 294 ~~~i~~~~D~v~~L~ 308 (674)
.+....|.++.+-
T Consensus 452 --~i~p~v~~~~~~~ 464 (483)
T 3euj_A 452 --NISPERGTTYKLV 464 (483)
T ss_dssp --SCCCSSSEEEECC
T ss_pred --hhhhccCceEEEE
Confidence 2556778888775
No 469
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.60 E-value=0.055 Score=52.69 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 044602 123 EILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G~ 145 (674)
-.++|+|++|+|||||++-+++.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999998864
No 470
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.58 E-value=0.07 Score=55.57 Aligned_cols=25 Identities=40% Similarity=0.510 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
..+++|+||+|||||||...|+..+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 3578999999999999999999654
No 471
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=92.49 E-value=0.039 Score=52.00 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 044602 124 ILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G 144 (674)
.++++|++|+|||||++.+.+
T Consensus 24 ~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999975
No 472
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=92.49 E-value=0.065 Score=54.43 Aligned_cols=24 Identities=21% Similarity=0.495 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 123 EILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
..++++|.+|+|||||+|.|.|..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~ 123 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKR 123 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTC
T ss_pred hheEEeCCCCCCHHHHHHHHhccc
Confidence 478999999999999999999865
No 473
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=92.47 E-value=0.059 Score=52.54 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|++|+|||||++.+.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998753
No 474
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=92.46 E-value=0.056 Score=51.85 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.+.+.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 4899999999999999999864
No 475
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=92.41 E-value=0.053 Score=59.53 Aligned_cols=52 Identities=6% Similarity=0.188 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCcEEEEEecCC
Q 044602 238 ERKRTSIGYEILVDPSLLLLDEPT-SGLDSTSANKLIQVLQKVAKAGRTVITTIHQP 293 (674)
Q Consensus 238 erqRv~iA~aL~~~P~illLDEPT-sgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 293 (674)
|++....+...+.+++++++.... .++.... ..+.+.++ +.++.+|++.+..
T Consensus 89 ~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~---~~~~pvilV~NK~ 141 (456)
T 4dcu_A 89 LAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILY---RTKKPVVLAVNKL 141 (456)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHT---TCCSCEEEEEECC
T ss_pred HHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHH---HcCCCEEEEEECc
Confidence 666667777788888876655443 4555543 44555543 3577888887763
No 476
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=92.35 E-value=0.029 Score=53.49 Aligned_cols=22 Identities=23% Similarity=0.516 Sum_probs=4.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 477
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.19 E-value=0.062 Score=51.66 Aligned_cols=23 Identities=26% Similarity=0.232 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 044602 123 EILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G~ 145 (674)
=.++++|++|+|||||++.+.+.
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999998853
No 478
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.08 E-value=0.078 Score=57.19 Aligned_cols=25 Identities=20% Similarity=0.497 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
-.+++|+||+|||||||.+.|+-.+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC
Confidence 3578999999999999999998654
No 479
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=91.97 E-value=0.073 Score=51.69 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.+.+.
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5889999999999999999864
No 480
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=91.92 E-value=0.069 Score=51.31 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||++.+.+.
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 481
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=91.92 E-value=0.021 Score=57.59 Aligned_cols=33 Identities=39% Similarity=0.647 Sum_probs=25.2
Q ss_pred eeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 112 LKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 112 L~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+.+.......| +.|.||+|+|||||.++++...
T Consensus 36 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 36 YANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp HHHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHHH
T ss_pred HHHCCCCCCce--EEEECCCCCcHHHHHHHHHHHh
Confidence 34444445555 7799999999999999999743
No 482
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=91.71 E-value=0.098 Score=50.06 Aligned_cols=53 Identities=15% Similarity=0.261 Sum_probs=37.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCc---------hHHHhhcCEEEEEe
Q 044602 251 DPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQPS---------SRMFHMFDKLLLIS 308 (674)
Q Consensus 251 ~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~---------~~i~~~~D~v~~L~ 308 (674)
+++++++||.-- +|+ .+++.|+++++.|..|+++.++.. ..+...+|.|.-|+
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 578999999754 543 366677777777999999988433 34555677775554
No 483
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=91.51 E-value=0.03 Score=66.07 Aligned_cols=32 Identities=28% Similarity=0.497 Sum_probs=28.4
Q ss_pred eEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 115 ITGSICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 115 vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++.+.+|+.++|.||||+|||||.++|++..
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 35667899999999999999999999999865
No 484
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=91.35 E-value=0.11 Score=53.34 Aligned_cols=27 Identities=33% Similarity=0.522 Sum_probs=22.8
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+++.-+.|.||+|+|||||.+.++..+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 445679999999999999999988654
No 485
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=91.28 E-value=0.11 Score=53.21 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+-.++++|.+|+|||||+|.|.|..
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CceEEEEecCCCchHHHHHHHhcCc
Confidence 3468999999999999999999864
No 486
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=91.28 E-value=0.1 Score=49.69 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=28.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCC
Q 044602 251 DPSLLLLDEPTSGLDSTSANKLIQVLQKVAKAGRTVITTIHQP 293 (674)
Q Consensus 251 ~P~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 293 (674)
++.++++||. ..++......+.+.+.+. ..+..+|++++++
T Consensus 102 ~~~vliiDe~-~~l~~~~~~~l~~~l~~~-~~~~~~i~~~~~~ 142 (226)
T 2chg_A 102 PFKIIFLDEA-DALTADAQAALRRTMEMY-SKSCRFILSCNYV 142 (226)
T ss_dssp SCEEEEEETG-GGSCHHHHHHHHHHHHHT-TTTEEEEEEESCG
T ss_pred CceEEEEeCh-hhcCHHHHHHHHHHHHhc-CCCCeEEEEeCCh
Confidence 6889999996 456777766776666553 2356677777664
No 487
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=91.23 E-value=0.11 Score=53.78 Aligned_cols=24 Identities=46% Similarity=0.675 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcC
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~ 145 (674)
+-.++|+|++|+|||||++.+.+.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 446899999999999999998875
No 488
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=91.18 E-value=0.11 Score=51.81 Aligned_cols=24 Identities=29% Similarity=0.511 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 123 EILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 123 e~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
-.++|+|++||||||+.+.|+-.+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 357999999999999999998543
No 489
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=91.02 E-value=0.1 Score=56.31 Aligned_cols=41 Identities=12% Similarity=0.034 Sum_probs=29.0
Q ss_pred HHHHHHHHcCCCccccccccCCccCccCHHHHHHHHHHHHHhhCCCEEEE
Q 044602 208 RVQMILKELGLERCRHTRVGGGFIKGISGGERKRTSIGYEILVDPSLLLL 257 (674)
Q Consensus 208 ~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~iA~aL~~~P~illL 257 (674)
.++++++.++.... . ..+|.+|.+++.-..-+...|-|+++
T Consensus 181 ~~~~~l~~l~~~~~----~-----~~~~~~e~~~l~~~~~~~~kP~i~v~ 221 (397)
T 1wxq_A 181 DVWEAMHKLNLPED----P-----TKWSQDDLLAFASEIRRVNKPMVIAA 221 (397)
T ss_dssp HHHHHHHHTTCCSC----G-----GGCCHHHHHHHHHHHHHHHSCEEEEE
T ss_pred HHHHHHHHhccCCc----c-----ccCCHHHHHHHHHhhhccCCCEEEEE
Confidence 45666777665432 1 26899998888777667779999887
No 490
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=90.97 E-value=0.12 Score=54.67 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
..-.++|+|++|+|||||++.|++.+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 44589999999999999999998654
No 491
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=90.97 E-value=0.096 Score=57.09 Aligned_cols=22 Identities=27% Similarity=0.679 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.++|+|++|+|||||+|.|+|.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999974
No 492
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=90.94 E-value=0.074 Score=56.24 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
.++|+|.+|+|||||++.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
No 493
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=90.89 E-value=0.12 Score=55.25 Aligned_cols=37 Identities=30% Similarity=0.481 Sum_probs=28.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC----------CCccEEEECCEe
Q 044602 124 ILALMGPSGSGKTTLLKIVGGRLTD----------DVKGNITYNDIP 160 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G~~~~----------~~~G~I~~~g~~ 160 (674)
-+||+|.+-+|||||+|.|+|.... +..|.+.++|..
T Consensus 74 ~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~ 120 (376)
T 4a9a_A 74 SVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAK 120 (376)
T ss_dssp EEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcE
Confidence 5899999999999999999985421 234777777654
No 494
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=90.80 E-value=0.094 Score=57.74 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcC
Q 044602 121 PGEILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 121 ~Ge~~ailG~sGsGKSTLl~~L~G~ 145 (674)
+|=.++|+|++|+|||||+|.|+|.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3445999999999999999999984
No 495
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=90.68 E-value=0.15 Score=49.68 Aligned_cols=25 Identities=44% Similarity=0.696 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 122 GEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 122 Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
|..++|=|+-||||||+.+.|+..+
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHH
Confidence 5688999999999999999999766
No 496
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=90.09 E-value=0.047 Score=52.28 Aligned_cols=21 Identities=29% Similarity=0.292 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 044602 124 ILALMGPSGSGKTTLLKIVGG 144 (674)
Q Consensus 124 ~~ailG~sGsGKSTLl~~L~G 144 (674)
.++|+|++|+|||||++.+.+
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 589999999999999998875
No 497
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=90.65 E-value=0.13 Score=51.80 Aligned_cols=26 Identities=35% Similarity=0.429 Sum_probs=22.1
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcC
Q 044602 120 CPGEILALMGPSGSGKTTLLKIVGGR 145 (674)
Q Consensus 120 ~~Ge~~ailG~sGsGKSTLl~~L~G~ 145 (674)
.+..-+.|.||+|+|||||.+.++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34457889999999999999999964
No 498
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=90.54 E-value=0.13 Score=54.64 Aligned_cols=29 Identities=14% Similarity=0.303 Sum_probs=22.8
Q ss_pred ccCHHHHHHHHHHHHH---hh--CCCEEEEeCCC
Q 044602 233 GISGGERKRTSIGYEI---LV--DPSLLLLDEPT 261 (674)
Q Consensus 233 ~LSgGerqRv~iA~aL---~~--~P~illLDEPT 261 (674)
.+|+||+||..++++| .. +++++++||||
T Consensus 296 ~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 296 RSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp -----CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred cCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 4899999999999999 77 89999999997
No 499
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=90.48 E-value=0.19 Score=48.73 Aligned_cols=72 Identities=19% Similarity=0.140 Sum_probs=54.6
Q ss_pred HHHHHHHHHHh--hCCCEEEEeCCCC--CCCHHHHHHHHHHHHHHHhCCcEEEEEecCCchHHHhhcCEEEEEeCCE
Q 044602 239 RKRTSIGYEIL--VDPSLLLLDEPTS--GLDSTSANKLIQVLQKVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGY 311 (674)
Q Consensus 239 rqRv~iA~aL~--~~P~illLDEPTs--gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 311 (674)
++.+.-++..+ .+.++++|||.+. .++-....++++.|.+- -++..||+|...+..++.+.+|.|.-|..-+
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~R-p~~~~vIlTGr~ap~~l~e~AD~VTem~~vk 181 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNAR-PGHQTVIITGRGCHRDILDLADTVSELRPVK 181 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTS-CTTCEEEEECSSCCHHHHHHCSEEEECCCSC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhC-cCCCEEEEECCCCcHHHHHhCcceeeeccee
Confidence 44556666777 4579999999977 34445555677777642 2478999999999999999999999987544
No 500
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=90.45 E-value=0.11 Score=58.84 Aligned_cols=33 Identities=33% Similarity=0.545 Sum_probs=25.7
Q ss_pred ceeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 044602 111 ILKGITGSICPGEILALMGPSGSGKTTLLKIVGGRL 146 (674)
Q Consensus 111 iL~~vs~~i~~Ge~~ailG~sGsGKSTLl~~L~G~~ 146 (674)
+|++++ .+--.++|+|++|+|||||+|.|.|..
T Consensus 30 ~L~~i~---~~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 30 ILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp HHHTCC---SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHhcc---CCCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 455542 233568999999999999999999864
Done!