BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044604
(476 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q944I4|GLYK_ARATH D-glycerate 3-kinase, chloroplastic OS=Arabidopsis thaliana GN=GLYK
PE=1 SV=2
Length = 456
Score = 516 bits (1330), Expect = e-145, Method: Compositional matrix adjust.
Identities = 261/432 (60%), Positives = 320/432 (74%), Gaps = 22/432 (5%)
Query: 62 HSLPCSHSLPLLSSLFVQTKS-------------NPSHKFSHMPTHLSKSEALSAGTGCS 108
+ +PC S P+ +S + +S NPS + ++ + A GCS
Sbjct: 27 YPIPCHSSNPICNSFNFKRRSFSPSSPKFNDHVVNPSSSYLSSKLSPIRTHSSFAACGCS 86
Query: 109 WMQNNSMLQSGEGCPDLKQGLVCSAIPTER-AQVSSVQDLFAFICSGPLIDKMGFSKEKI 167
W+Q+NSM+ + CSA+PT VSSV DLF FICSGPL++K+G + +++
Sbjct: 87 WIQDNSMVHDYATTTN-GTSKRCSALPTTNTVDVSSVSDLFEFICSGPLVNKIGITPQRV 145
Query: 168 GDSIDKWIAYNSYLCRLFQLNELYLTFPQKV---GFFTTTYLFSCGVKIKFLSMCPSLRM 224
G SIDKW+ Y S LCRLFQLNEL LT PQK ++ +++ C +I ++ S
Sbjct: 146 GQSIDKWLLYGSQLCRLFQLNELKLTIPQKARLYHYYIPVFIW-CEDQI---ALHNSKFK 201
Query: 225 EKIYLPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREAN 284
+ +P IGFSAPQGCGKTTL FALDYLF+ T +KSATIS+DDFYLTAEGQA+LR+ N
Sbjct: 202 DGDDVPPLVIGFSAPQGCGKTTLVFALDYLFKTTKKKSATISVDDFYLTAEGQAELRKKN 261
Query: 285 RGNALLEFRGNAGSHDLQLSVETLTAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWP 344
GNALLE+RGNAGSHDL+LSVETL A+SKLTKEG KMK+PRY+KSAY+GRGDRAD STWP
Sbjct: 262 PGNALLEYRGNAGSHDLKLSVETLEALSKLTKEGLKMKVPRYNKSAYSGRGDRADSSTWP 321
Query: 345 EIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNKNLEAYFDAWDKFIKAWIVIKIK 404
E+EGPL+V+L+EGWMLGFKPLP +VVKAVDPQLE VNKNLEAY+DAWDK+I AW+VIKI+
Sbjct: 322 EVEGPLSVILFEGWMLGFKPLPADVVKAVDPQLEVVNKNLEAYYDAWDKYIDAWVVIKIQ 381
Query: 405 DPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPTLYSEGPNGSDPEHT 464
DPS VY WRLQAEIAMR+ G GMSDEEV DFVSRYLPAY AYLPTLY+EGP+GSDP+
Sbjct: 382 DPSYVYRWRLQAEIAMRQDGQAGMSDEEVNDFVSRYLPAYKAYLPTLYAEGPSGSDPDRV 441
Query: 465 LIIEIDDGRNPI 476
L I+ID+ RNPI
Sbjct: 442 LAIDIDEERNPI 453
>sp|Q9UUH3|MUG58_SCHPO Uncharacterized kinase mug58 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=mug58 PE=1 SV=1
Length = 277
Score = 151 bits (381), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 97/253 (38%), Positives = 141/253 (55%), Gaps = 16/253 (6%)
Query: 234 IGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNALLEFR 293
+G S PQG GK+TLA ALD S+DDFYLT Q +L + N N L++ R
Sbjct: 28 LGISGPQGSGKSTLASALDTELTRKNESVVKFSLDDFYLTHAEQVELAKNNPNNPLVQHR 87
Query: 294 GNAGSHDLQLSVETLTAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLTV- 352
G AG+HD+ L A K + E ++ +P YDKS + G GDR D S W + T
Sbjct: 88 GLAGTHDVTFLNNVLNAFVKGSDE--EVSIPFYDKSKFGGYGDRGDESQWKKANPKTTTY 145
Query: 353 VLYEGWMLGFKPLP--VEVVKA-------VDPQLETVNKNLEAYFDAWDKFIKAWIVIKI 403
V++EGWM+GF+PL + V+A ++ L VN+ L Y + K I + + ++
Sbjct: 146 VIFEGWMVGFEPLDSCMLSVRARSTRWQNIEGSLLWVNRKLADYQPIFQK-IDSLVELEA 204
Query: 404 KDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYLPTLYSEGPNGSDPEH 463
++ + VY WRLQ E A++ + GMSDEEV +FV+ Y+P Y YL TL ++ +P H
Sbjct: 205 QEINYVYRWRLQQEHALKARIHKGMSDEEVIEFVNHYMPQYVFYLGTLSNKV--HLNP-H 261
Query: 464 TLIIEIDDGRNPI 476
L I +D+ R P+
Sbjct: 262 CLEIILDENRYPV 274
>sp|P42938|TDA10_YEAST Probable ATP-dependent kinase TDA10 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TDA10 PE=1 SV=1
Length = 290
Score = 135 bits (340), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 99/266 (37%), Positives = 134/266 (50%), Gaps = 23/266 (8%)
Query: 228 YLPWWY---------IGFSAPQGCGK--TTLAFALDYLFRVTGRKS-ATISIDDFYLTAE 275
Y+P W+ I FS PQG GK T++ + + G KS SIDDFYLT E
Sbjct: 19 YIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHE 78
Query: 276 GQAKLREANRGNALLEFRGNAGSHDLQLSVETLTAISKLTK--EGTKMKLPRYDKSAYNG 333
Q KL E + N LL+ RG G+HD++L E L I + + + LP+YDKS + G
Sbjct: 79 DQLKLNEQFKNNKLLQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKG 138
Query: 334 RGDRADPSTWPEIEGPLTVVLYEGWMLGFKPL--PVEVVKAVDPQLETVNKNLEAYFD-A 390
GDR T +I+ P+ + + EGW LGF P+ +E + + VN L Y D
Sbjct: 139 EGDRC--PTGQKIKLPVDIFILEGWFLGFNPILQGIENNDLLTGDMVDVNAKLFFYSDLL 196
Query: 391 W-DKFIKAW-IVIKIKDPSCVYEWRLQAEIAMREAGNPGMSDEEVKDFVSRYLPAYHAYL 448
W + IK+ IV + + VY WRLQ E + GM+DE+V FV RY+P+Y YL
Sbjct: 197 WRNPEIKSLGIVFTTDNINNVYGWRLQQEHELISKVGKGMTDEQVHAFVDRYMPSYKLYL 256
Query: 449 PTLYSEGPNGSDPEHTLIIEIDDGRN 474
GS TL + ID RN
Sbjct: 257 NDFVRSESLGSIA--TLTLGIDSNRN 280
>sp|P60552|KGUA_LACJO Guanylate kinase OS=Lactobacillus johnsonii (strain CNCM I-12250 /
La1 / NCC 533) GN=gmk PE=3 SV=1
Length = 204
Score = 38.5 bits (88), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 12/74 (16%)
Query: 236 FSAPQGCGKTTL--------AFALDYLFRVTGRKS--ATISIDDFYLTAEGQAKLREANR 285
S P G GK T+ AF+ +Y +T RK ++ D+Y +E + +EA +
Sbjct: 10 LSGPSGVGKGTVKSAMVKQKAFSFEYSVSMTTRKPRPGEVNGKDYYFVSED--RFQEAIK 67
Query: 286 GNALLEFRGNAGSH 299
GN LLE+ G+H
Sbjct: 68 GNELLEYNEYVGNH 81
>sp|Q5SKR5|URK_THET8 Uridine kinase OS=Thermus thermophilus (strain HB8 / ATCC 27634 /
DSM 579) GN=udk PE=1 SV=1
Length = 211
Score = 37.7 bits (86), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 56/129 (43%), Gaps = 20/129 (15%)
Query: 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNALLE 291
+ IG + GKTTLA AL R G + A + +D +Y G L E R N
Sbjct: 7 FVIGIAGGTASGKTTLAQALA---RTLGERVALLPMDHYY-KDLGHLPLEERLRVNY--- 59
Query: 292 FRGNAGSHDLQLSVETLTAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLT 351
+ + DL L +E A+ + G +++P YD AY R R P P
Sbjct: 60 --DHPDAFDLALYLEHAQALLR----GLPVEMPVYDFRAYT-RSPRRTPVR------PAP 106
Query: 352 VVLYEGWML 360
VV+ EG ++
Sbjct: 107 VVILEGILV 115
>sp|Q72L53|URK_THET2 Uridine kinase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163
/ DSM 7039) GN=udk PE=3 SV=1
Length = 211
Score = 37.7 bits (86), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 56/129 (43%), Gaps = 20/129 (15%)
Query: 232 WYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTAEGQAKLREANRGNALLE 291
+ IG + GKTTLA AL R G + A + +D +Y G L E R N
Sbjct: 7 FVIGIAGGTASGKTTLAQALA---RTLGERVALLPMDHYY-KDLGHLPLEERLRVNY--- 59
Query: 292 FRGNAGSHDLQLSVETLTAISKLTKEGTKMKLPRYDKSAYNGRGDRADPSTWPEIEGPLT 351
+ + DL L +E A+ + G +++P YD AY R R P P
Sbjct: 60 --DHPDAFDLALYLEHAQALLR----GLPVEMPVYDFRAYT-RSPRRTPVR------PAP 106
Query: 352 VVLYEGWML 360
VV+ EG ++
Sbjct: 107 VVILEGILV 115
>sp|Q88Y75|COAA_LACPL Pantothenate kinase OS=Lactobacillus plantarum (strain ATCC BAA-793
/ NCIMB 8826 / WCFS1) GN=coaA PE=3 SV=1
Length = 309
Score = 36.2 bits (82), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 14/116 (12%)
Query: 234 IGFSAPQGCGKTTLAFALDYLFRVT--GRKSATISIDDFYLTAEGQAKLREANRGNALLE 291
IG S GKTT A L+ LF+ R++ I+ D F K++ L+E
Sbjct: 88 IGVSGSVAVGKTTTARLLEILFKYLYPDRRTQLITTDGFLYPNAELKKMQ-------LME 140
Query: 292 FRGNAGSHDLQLSVETLTAISKLTKEGTKM-KLPRYDKSAYNGRGDRADPSTWPEI 346
+G S+D+ ++ L + K G + K P Y Y+ +R D T P+I
Sbjct: 141 RKGFPESYDMTRLIQFLNDV----KSGKPLAKAPVYSHQTYDIVPNRFDVITHPDI 192
>sp|Q9CFM3|COAA_LACLA Pantothenate kinase OS=Lactococcus lactis subsp. lactis (strain
IL1403) GN=coaA PE=3 SV=1
Length = 306
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 77/186 (41%), Gaps = 27/186 (14%)
Query: 216 LSMCPSLRMEKIY-LPWWYIGFSAPQGCGKTTLAFALDYLFRVTGRKSATISIDDFYLTA 274
+S L ++KI P IG S GK+T A L L R +++D +T
Sbjct: 67 MSYSKGLFLQKIVKTPPLIIGISGSVAVGKSTTARLLQLLL---SRAFPKLTVD--LVTT 121
Query: 275 EGQAKLREANRGNALLEFRGNAGSHDLQLSVETLTAISKLTKEGTKMKLPRYDKSAYNGR 334
+G + +L+ +G S+D+ E LT+ K G K ++P Y Y+
Sbjct: 122 DGFLYTTNDLKNMGILDRKGFPESYDM----EKLTSFLYHVKNGEKFEVPIYSHETYDIL 177
Query: 335 GDRADPSTWPEIEGPLTVVLYEGWMLGFKPLPVEVVKAVDPQLETVNK--NLEAYFDAWD 392
+++ P+I ++ EG + V++ QL ++ + Y DA +
Sbjct: 178 PNQSQIIDSPDI------LIVEG---------INVLQNPQNQLLYISDFYDFSIYVDADE 222
Query: 393 KFIKAW 398
K I+ W
Sbjct: 223 KLIEKW 228
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 185,599,451
Number of Sequences: 539616
Number of extensions: 7980898
Number of successful extensions: 65026
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 124
Number of HSP's that attempted gapping in prelim test: 50183
Number of HSP's gapped (non-prelim): 12806
length of query: 476
length of database: 191,569,459
effective HSP length: 121
effective length of query: 355
effective length of database: 126,275,923
effective search space: 44827952665
effective search space used: 44827952665
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)